BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780940|ref|YP_003065353.1| ribonuclease III [Candidatus
Liberibacter asiaticus str. psy62]
         (227 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780940|ref|YP_003065353.1| ribonuclease III [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040617|gb|ACT57413.1| ribonuclease III [Candidatus Liberibacter asiaticus str. psy62]
          Length = 227

 Score =  466 bits (1198), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 227/227 (100%), Positives = 227/227 (100%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF
Sbjct: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE
Sbjct: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR
Sbjct: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT
Sbjct: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227


>gi|315122353|ref|YP_004062842.1| ribonuclease III [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313495755|gb|ADR52354.1| ribonuclease III [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 232

 Score =  362 bits (928), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 169/225 (75%), Positives = 200/225 (88%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           +L+ S LE+RIGY F+N+ LL+KALTHSSI HS QE+YERLEFLGDR+LG+LIS LLF++
Sbjct: 8   SLKLSALERRIGYTFSNKYLLKKALTHSSICHSPQENYERLEFLGDRVLGILISKLLFDY 67

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           FDSAKEGELS+RFNSLVSAETCSQVA+EL+L SFI VSSDLR +VC F+  IQADVVESL
Sbjct: 68  FDSAKEGELSIRFNSLVSAETCSQVAKELELDSFIYVSSDLRMEVCKFVKGIQADVVESL 127

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           IAALYLDGGIE A +FV KYWK+R LK+G+FRRDAKTELQEWAHAKF VTP YK+  RSG
Sbjct: 128 IAALYLDGGIESASSFVTKYWKKRVLKNGEFRRDAKTELQEWAHAKFRVTPTYKIMLRSG 187

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           PDHDPRFTV+V++ GL   +G+DCSKR+AEQ+AAAE+L+REGIW+
Sbjct: 188 PDHDPRFTVMVDVLGLYSGKGIDCSKRSAEQMAAAEILRREGIWS 232


>gi|222085390|ref|YP_002543920.1| ribonuclease III [Agrobacterium radiobacter K84]
 gi|254807233|sp|B9JC73|RNC_AGRRK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|221722838|gb|ACM25994.1| ribonuclease III [Agrobacterium radiobacter K84]
          Length = 239

 Score =  278 bits (711), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 137/219 (62%), Positives = 166/219 (75%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           TLE  IG+AF  +  L+ ALTH+S       +YERLEFLGDR+LGL I+ LLF  F +A 
Sbjct: 14  TLEAAIGHAFVEKERLDWALTHASARTHKAGNYERLEFLGDRVLGLCIAELLFRTFGTAT 73

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EGELSVR N LVSAETC+ VA E+ L  FIR  +D++K     M +++ADVVESLIAALY
Sbjct: 74  EGELSVRLNQLVSAETCAAVADEMQLHLFIRTGADVKKLTGKRMLNVRADVVESLIAALY 133

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           LDGG+EVA  F+ +YW+ RA++    RRDAKTELQEWAHAKFGVTP Y+V  RSGPDHDP
Sbjct: 134 LDGGLEVARKFILRYWEGRAVRPDGARRDAKTELQEWAHAKFGVTPVYRVDDRSGPDHDP 193

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           RFTV VE++G AP  G++ SKRAAEQVAA  +L+REGIW
Sbjct: 194 RFTVTVEVAGAAPETGIERSKRAAEQVAATRILEREGIW 232


>gi|209548601|ref|YP_002280518.1| ribonuclease III [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|226741375|sp|B5ZW73|RNC_RHILW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|209534357|gb|ACI54292.1| Ribonuclease III [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 239

 Score =  275 bits (703), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 133/226 (58%), Positives = 172/226 (76%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           +SA   + LE  IG+ FA +  L++ALTH+S       +YERLEFLGDR+LGL I+ LLF
Sbjct: 7   LSAADRAKLEGLIGHDFAEKERLDRALTHASARTEKGGNYERLEFLGDRVLGLCIAELLF 66

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F +A EGELSVR N LVSAETC+ VA EL+L  +IR  +D++K     M +++ADVVE
Sbjct: 67  RTFGTAGEGELSVRLNQLVSAETCAAVADELNLHLYIRTGADVKKLTGKRMMNVRADVVE 126

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           SLIAA+YLDGG+EVA  F+ +YW+ RA+++   +RDAKTELQEW+HAKFGVTP Y+V  R
Sbjct: 127 SLIAAIYLDGGLEVARRFILRYWQGRAVRADGAKRDAKTELQEWSHAKFGVTPNYRVDER 186

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           SGPDHDPRF V VE++G+ P  G++ SKRAAEQVAA ++L+REGIW
Sbjct: 187 SGPDHDPRFKVTVEVAGIKPETGVERSKRAAEQVAATKMLEREGIW 232


>gi|190891073|ref|YP_001977615.1| ribonuclease III protein [Rhizobium etli CIAT 652]
 gi|218515110|ref|ZP_03511950.1| ribonuclease III [Rhizobium etli 8C-3]
 gi|238692512|sp|B3PUN8|RNC_RHIE6 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|190696352|gb|ACE90437.1| ribonuclease III protein [Rhizobium etli CIAT 652]
 gi|327191322|gb|EGE58355.1| ribonuclease III protein [Rhizobium etli CNPAF512]
          Length = 239

 Score =  275 bits (702), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 133/226 (58%), Positives = 172/226 (76%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           +SA   + LE  IG+ FA +  L++ALTH+S       +YERLEFLGDR+LGL I+ LLF
Sbjct: 7   LSAADRAKLESLIGHDFAEKERLDRALTHASARTEKGSNYERLEFLGDRVLGLCIAELLF 66

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F +A EGELSVR N LVSAETC+ VA EL+L  +IR  +D++K     M +++ADVVE
Sbjct: 67  RTFGTAGEGELSVRLNQLVSAETCAAVADELNLHLYIRTGADVKKLTGKRMMNVRADVVE 126

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           SLIAA+YLDGG+EVA  F+ +YW+ RA+++   +RDAKTELQEW+HAKFGVTP Y+V  R
Sbjct: 127 SLIAAIYLDGGLEVARRFILRYWQGRAVRADGAKRDAKTELQEWSHAKFGVTPLYRVDER 186

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           SGPDHDPRF V VE++G+ P  G++ SKRAAEQVAA ++L+REGIW
Sbjct: 187 SGPDHDPRFKVTVEVAGIKPETGVERSKRAAEQVAATKMLEREGIW 232


>gi|86357028|ref|YP_468920.1| ribonuclease III [Rhizobium etli CFN 42]
 gi|123512466|sp|Q2KAE3|RNC_RHIEC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|86281130|gb|ABC90193.1| ribonuclease III protein [Rhizobium etli CFN 42]
          Length = 239

 Score =  274 bits (701), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 133/226 (58%), Positives = 172/226 (76%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           +SA   + LE  IG+ FA +  L++ALTH+S       +YERLEFLGDR+LGL I+ LLF
Sbjct: 7   LSAADRAKLEALIGHDFAEKERLDRALTHASARTEKGSNYERLEFLGDRVLGLCIAELLF 66

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F +A EGELSVR N LVSAETC+ VA EL+L  +IR  +D++K     M +++ADVVE
Sbjct: 67  RTFGTAGEGELSVRLNQLVSAETCAAVADELNLHLYIRTGADVKKLTGKRMMNVRADVVE 126

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           SLIAA+YLDGG+EVA  F+ +YW+ RA+++   +RDAKTELQEW+HAKFGVTP Y+V  R
Sbjct: 127 SLIAAIYLDGGLEVARRFILRYWQGRAVRADGAKRDAKTELQEWSHAKFGVTPIYRVDER 186

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           SGPDHDPRF V VE++G+ P  G++ SKRAAEQVAA ++L+REGIW
Sbjct: 187 SGPDHDPRFRVTVEVAGIKPESGVERSKRAAEQVAATKMLEREGIW 232


>gi|241203889|ref|YP_002974985.1| ribonuclease III [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240857779|gb|ACS55446.1| ribonuclease III [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 239

 Score =  274 bits (700), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 133/226 (58%), Positives = 172/226 (76%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           +SA   + LE  IG+ FA +  L++ALTH+S       +YERLEFLGDR+LGL I+ LLF
Sbjct: 7   LSAADRAKLEALIGHDFAEKERLDRALTHASARTEKGGNYERLEFLGDRVLGLCIAELLF 66

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F +A EGELSVR N LVSAETC+ VA EL+L  +IR  +D++K     M +++ADVVE
Sbjct: 67  RTFGTAGEGELSVRLNQLVSAETCAAVADELNLHLYIRTGADVKKLTGKRMMNVRADVVE 126

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           SLIAA+YLDGG+EVA  F+ +YW+ RA+++   +RDAKTELQEW+HAKFGVTP Y+V  R
Sbjct: 127 SLIAAIYLDGGLEVARRFILRYWQGRAVRADGAKRDAKTELQEWSHAKFGVTPIYRVDER 186

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           SGPDHDPRF V VE++G+ P  G++ SKRAAEQVAA ++L+REGIW
Sbjct: 187 SGPDHDPRFKVTVEVAGIKPETGVERSKRAAEQVAATKMLEREGIW 232


>gi|116251277|ref|YP_767115.1| ribonuclease III [Rhizobium leguminosarum bv. viciae 3841]
 gi|189043336|sp|Q1MJ54|RNC_RHIL3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|115255925|emb|CAK07006.1| putative ribonuclease III [Rhizobium leguminosarum bv. viciae 3841]
          Length = 239

 Score =  273 bits (699), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 133/226 (58%), Positives = 172/226 (76%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           +SA   + LE  IG+ FA +  L++ALTH+S       +YERLEFLGDR+LGL I+ LLF
Sbjct: 7   LSAADRAKLEGLIGHDFAEKERLDRALTHASARTEKGGNYERLEFLGDRVLGLCIAELLF 66

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F +A EGELSVR N LVSAETC+ VA EL+L  +IR  +D++K     M +++ADVVE
Sbjct: 67  RTFGTAGEGELSVRLNQLVSAETCAAVADELNLHLYIRTGADVKKLTGKRMMNVRADVVE 126

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           SLIAA+YLDGG+EVA  F+ +YW+ RA+++   +RDAKTELQEW+HAKFGVTP Y+V  R
Sbjct: 127 SLIAAIYLDGGLEVARRFILRYWQGRAVRADGAKRDAKTELQEWSHAKFGVTPIYRVDER 186

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           SGPDHDPRF V VE++G+ P  G++ SKRAAEQVAA ++L+REGIW
Sbjct: 187 SGPDHDPRFKVTVEVAGIKPETGVERSKRAAEQVAATKMLEREGIW 232


>gi|227821403|ref|YP_002825373.1| ribonuclease III [Sinorhizobium fredii NGR234]
 gi|259491961|sp|C3M8S4|RNC_RHISN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|227340402|gb|ACP24620.1| ribonuclease III [Sinorhizobium fredii NGR234]
          Length = 239

 Score =  273 bits (697), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 131/226 (57%), Positives = 164/226 (72%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           +SA   + LE  IGY FA +  L++ALTHSS  ++   +Y+RLEFLGDR+LGL ++ LLF
Sbjct: 7   LSAEDRARLETAIGYQFAEKERLDRALTHSSARNARASNYQRLEFLGDRVLGLCVAELLF 66

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELSVR N LVSAE+C++VA EL L  +IR  SD++K     M +++ADVVE
Sbjct: 67  QTFLDANEGELSVRLNQLVSAESCARVADELSLHEYIRTGSDVKKITGKHMMNVRADVVE 126

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           SLIAA+YLDGG+E A  FV ++W  RA  +   RRDAKTELQEWAHAKFG  P Y+   R
Sbjct: 127 SLIAAIYLDGGLEAARRFVLRHWTDRAASADGARRDAKTELQEWAHAKFGAAPRYRTDDR 186

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           SGPDHDPRFTV VE+ G+AP  G D SKR AEQ+AA  +L+REG+W
Sbjct: 187 SGPDHDPRFTVTVEVDGIAPETGTDRSKRGAEQIAAMRLLEREGVW 232


>gi|15964825|ref|NP_385178.1| ribonuclease III [Sinorhizobium meliloti 1021]
 gi|307300895|ref|ZP_07580664.1| ribonuclease III [Sinorhizobium meliloti BL225C]
 gi|307320712|ref|ZP_07600124.1| ribonuclease III [Sinorhizobium meliloti AK83]
 gi|22654067|sp|Q92R47|RNC_RHIME RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|15074004|emb|CAC45651.1| Probable ribonuclease III [Sinorhizobium meliloti 1021]
 gi|306893639|gb|EFN24413.1| ribonuclease III [Sinorhizobium meliloti AK83]
 gi|306903850|gb|EFN34436.1| ribonuclease III [Sinorhizobium meliloti BL225C]
          Length = 238

 Score =  273 bits (697), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 131/218 (60%), Positives = 162/218 (74%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE  IGY FA +  L++ALTHSS       +Y+RLEFLGDR+LGL ++ LLF  F  A E
Sbjct: 14  LEAAIGYRFAEKERLDRALTHSSARSGRAINYQRLEFLGDRVLGLCVAELLFQTFTDANE 73

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELSVR N LVSAE+C++VA EL L  FIR  SD++K     M +++ADVVESLIAA+YL
Sbjct: 74  GELSVRLNQLVSAESCAKVADELSLHEFIRTGSDVKKITGKHMMNVRADVVESLIAAIYL 133

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           DGG++ A  FV ++W  RA  +   RRDAKTELQEWAHAKFGV P+Y+   RSGPDHDPR
Sbjct: 134 DGGLDAARRFVLEHWTHRAASADGARRDAKTELQEWAHAKFGVAPKYRTDDRSGPDHDPR 193

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           FTV VE+ G+AP  G+D SKR AEQVAA ++L+REG+W
Sbjct: 194 FTVTVEVDGIAPETGVDRSKRGAEQVAAMKLLEREGVW 231


>gi|150395906|ref|YP_001326373.1| ribonuclease III [Sinorhizobium medicae WSM419]
 gi|189043356|sp|A6U7A8|RNC_SINMW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|150027421|gb|ABR59538.1| Ribonuclease III [Sinorhizobium medicae WSM419]
          Length = 238

 Score =  272 bits (695), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 132/226 (58%), Positives = 165/226 (73%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           ++A   + LE  IGY FA +  L++ALTHSS       +Y+RLEFLGDRILGL ++ LLF
Sbjct: 6   LNAEDRARLEAAIGYQFAEKERLDRALTHSSARSGRAINYQRLEFLGDRILGLCVAELLF 65

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELSVR N LVSAE+C++VA EL L  FIR  SD++K     M +++ADVVE
Sbjct: 66  QTFSDANEGELSVRLNQLVSAESCAKVADELSLHEFIRTGSDVKKITGKHMMNVRADVVE 125

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           SLIAA+YLDGG+E A  FV ++W  RA  +   RRDAKTELQEWAHA+FGV P+Y+   R
Sbjct: 126 SLIAAIYLDGGLEAARRFVLEHWTHRAASADGARRDAKTELQEWAHARFGVAPKYRTEDR 185

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           SGPDHDPRFTV VE+ G+ P  G+D SKR AEQVAA ++L+REG+W
Sbjct: 186 SGPDHDPRFTVTVEVDGIDPETGVDRSKRGAEQVAAMKLLEREGVW 231


>gi|325292414|ref|YP_004278278.1| ribonuclease III [Agrobacterium sp. H13-3]
 gi|325060267|gb|ADY63958.1| ribonuclease III [Agrobacterium sp. H13-3]
          Length = 237

 Score =  267 bits (682), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 129/226 (57%), Positives = 165/226 (73%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           +S    S LE  IGY F  ++ L++ALTH+S   +   +YERLEFLGDR+LGL ++ LLF
Sbjct: 7   LSIAEISRLEALIGYEFKEKARLDRALTHASARSAAAGNYERLEFLGDRVLGLCVAELLF 66

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F +A EGELSVR N LVSAE+C+ +  E+ L +FIR  SD++K     M +++ADVVE
Sbjct: 67  STFRNASEGELSVRLNQLVSAESCAAIGDEMGLHNFIRTGSDVKKLTGKAMLNVRADVVE 126

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           SLIA LYLDGG+E +  F+ KYW+ RA +    RRDAKTELQEWAHA+F VTP Y+V  R
Sbjct: 127 SLIATLYLDGGLEASRKFILKYWQGRATRVDAGRRDAKTELQEWAHARFAVTPAYRVDDR 186

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           SGPDHDP FTV VEI G+ P  G++ SKRAAEQVAA  +L+REG+W
Sbjct: 187 SGPDHDPSFTVTVEIPGVKPETGVERSKRAAEQVAATRLLEREGVW 232


>gi|159184588|ref|NP_354058.2| ribonuclease III [Agrobacterium tumefaciens str. C58]
 gi|22654057|sp|Q8UGK2|RNC_AGRT5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|159139890|gb|AAK86843.2| ribonuclease III [Agrobacterium tumefaciens str. C58]
          Length = 239

 Score =  265 bits (678), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 129/226 (57%), Positives = 164/226 (72%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           +SA   S LE  IGY F  ++ L++ALTH+S   +   +YERLEFLGDR+LGL ++ LLF
Sbjct: 7   LSADEISRLEALIGYEFKEKARLDRALTHASARSAAAGNYERLEFLGDRVLGLCVAELLF 66

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F +A EGELSVR N LVSAE+C+ +  E+ L +FIR  SD++K     M +++ADVVE
Sbjct: 67  STFRNASEGELSVRLNQLVSAESCAAIGDEMGLHNFIRTGSDVKKLTGKAMLNVRADVVE 126

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           SLIA LYLDGG+E +  F+ KYW+ RA      RRDAKTELQEWAHA+F  TP Y+V  R
Sbjct: 127 SLIATLYLDGGLEASRKFILKYWQGRATSVDAGRRDAKTELQEWAHARFAATPAYRVDDR 186

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           SGPDHDP FTV VEI G+ P  G++ SKRAAEQVAA  +L+REG+W
Sbjct: 187 SGPDHDPSFTVTVEIPGVKPETGVERSKRAAEQVAATRLLEREGVW 232


>gi|163760595|ref|ZP_02167676.1| putative ribonuclease III [Hoeflea phototrophica DFL-43]
 gi|162282210|gb|EDQ32500.1| putative ribonuclease III [Hoeflea phototrophica DFL-43]
          Length = 244

 Score =  263 bits (672), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 131/217 (60%), Positives = 165/217 (76%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           E+RIG+ F++   LE+ALTH+S   +   +YERLEFLGDR+LGL ++ LLF HF +A EG
Sbjct: 16  EERIGHQFSSPVRLERALTHASTRTNTNGNYERLEFLGDRVLGLCVAELLFGHFGNATEG 75

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           E+SVR N LVSA+TCS+VA +L L  FIR  +D++K     M +++ADVVESLIAA+YLD
Sbjct: 76  EMSVRLNQLVSAQTCSEVADDLGLHEFIRTGADVKKLTGKRMANVRADVVESLIAAIYLD 135

Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
            G+E A +F+ K+WK RAL     RRDAKTELQEWAHA+FGVTP Y+VT R+GPDH+P F
Sbjct: 136 AGLEAARSFIHKHWKARALAEDGARRDAKTELQEWAHARFGVTPVYRVTDRAGPDHEPVF 195

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           TV VEI+G  PA G   SKRAAEQ AA  VL+REG+W
Sbjct: 196 TVTVEINGAKPASGESSSKRAAEQAAATAVLEREGVW 232


>gi|222148081|ref|YP_002549038.1| ribonuclease III [Agrobacterium vitis S4]
 gi|259491897|sp|B9JUN7|RNC_AGRVS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|221735069|gb|ACM36032.1| ribonuclease III [Agrobacterium vitis S4]
          Length = 239

 Score =  261 bits (668), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 131/227 (57%), Positives = 160/227 (70%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           ++A     +E  IGY F  +  L+KALTHSS   +    YERLEFLGDR+LGL ++  LF
Sbjct: 7   LTAEEREKVEAVIGYHFIGKERLDKALTHSSARPAKGSDYERLEFLGDRVLGLCVAEHLF 66

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F +A EGELSVR N LVSAETC+ VA E+ L  +IR  +D++K     M +++ADVVE
Sbjct: 67  KVFRAATEGELSVRLNQLVSAETCAAVADEIQLHRYIRTGADVKKLTDKNMLNVRADVVE 126

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           SLIAA+YLD G+E A  FV K+W +RA +    RRDAKTELQEWAHAKF VTP Y+V  R
Sbjct: 127 SLIAAIYLDAGLEAARAFVLKFWAERASRQDAGRRDAKTELQEWAHAKFAVTPVYRVADR 186

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           SGPDHDP FTV VEI  L P  G+D SKRAAEQ AA  +L+REG+WT
Sbjct: 187 SGPDHDPSFTVTVEIGKLEPETGIDRSKRAAEQAAATRLLEREGVWT 233


>gi|17987570|ref|NP_540204.1| ribonuclease III [Brucella melitensis bv. 1 str. 16M]
 gi|23501548|ref|NP_697675.1| ribonuclease III [Brucella suis 1330]
 gi|62289621|ref|YP_221414.1| ribonuclease III [Brucella abortus bv. 1 str. 9-941]
 gi|82699549|ref|YP_414123.1| ribonuclease III [Brucella melitensis biovar Abortus 2308]
 gi|161618631|ref|YP_001592518.1| ribonuclease III [Brucella canis ATCC 23365]
 gi|163842933|ref|YP_001627337.1| ribonuclease III [Brucella suis ATCC 23445]
 gi|189023875|ref|YP_001934643.1| ribonuclease III [Brucella abortus S19]
 gi|225852182|ref|YP_002732415.1| ribonuclease III [Brucella melitensis ATCC 23457]
 gi|254688937|ref|ZP_05152191.1| ribonuclease III [Brucella abortus bv. 6 str. 870]
 gi|254693419|ref|ZP_05155247.1| ribonuclease III [Brucella abortus bv. 3 str. Tulya]
 gi|254697072|ref|ZP_05158900.1| ribonuclease III [Brucella abortus bv. 2 str. 86/8/59]
 gi|254701449|ref|ZP_05163277.1| ribonuclease III [Brucella suis bv. 5 str. 513]
 gi|254703995|ref|ZP_05165823.1| ribonuclease III [Brucella suis bv. 3 str. 686]
 gi|254707631|ref|ZP_05169459.1| ribonuclease III [Brucella pinnipedialis M163/99/10]
 gi|254709787|ref|ZP_05171598.1| ribonuclease III [Brucella pinnipedialis B2/94]
 gi|254713789|ref|ZP_05175600.1| ribonuclease III [Brucella ceti M644/93/1]
 gi|254717154|ref|ZP_05178965.1| ribonuclease III [Brucella ceti M13/05/1]
 gi|254718802|ref|ZP_05180613.1| ribonuclease III [Brucella sp. 83/13]
 gi|254729968|ref|ZP_05188546.1| ribonuclease III [Brucella abortus bv. 4 str. 292]
 gi|256031277|ref|ZP_05444891.1| ribonuclease III [Brucella pinnipedialis M292/94/1]
 gi|256044358|ref|ZP_05447262.1| ribonuclease III [Brucella melitensis bv. 1 str. Rev.1]
 gi|256060789|ref|ZP_05450951.1| ribonuclease III [Brucella neotomae 5K33]
 gi|256113201|ref|ZP_05454069.1| ribonuclease III [Brucella melitensis bv. 3 str. Ether]
 gi|256159387|ref|ZP_05457169.1| ribonuclease III [Brucella ceti M490/95/1]
 gi|256254685|ref|ZP_05460221.1| ribonuclease III [Brucella ceti B1/94]
 gi|256257185|ref|ZP_05462721.1| ribonuclease III [Brucella abortus bv. 9 str. C68]
 gi|256264307|ref|ZP_05466839.1| ribonuclease III family protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|256369099|ref|YP_003106607.1| ribonuclease III [Brucella microti CCM 4915]
 gi|260168415|ref|ZP_05755226.1| ribonuclease III [Brucella sp. F5/99]
 gi|260883452|ref|ZP_05895066.1| ribonuclease III [Brucella abortus bv. 9 str. C68]
 gi|261221863|ref|ZP_05936144.1| ribonuclease III [Brucella ceti B1/94]
 gi|261324780|ref|ZP_05963977.1| ribonuclease III [Brucella neotomae 5K33]
 gi|265988360|ref|ZP_06100917.1| ribonuclease III [Brucella pinnipedialis M292/94/1]
 gi|265990773|ref|ZP_06103330.1| ribonuclease III [Brucella melitensis bv. 1 str. Rev.1]
 gi|265994609|ref|ZP_06107166.1| ribonuclease III [Brucella melitensis bv. 3 str. Ether]
 gi|265997827|ref|ZP_06110384.1| ribonuclease III [Brucella ceti M490/95/1]
 gi|54039241|sp|P66665|RNC_BRUSU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|54041613|sp|P66664|RNC_BRUME RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|75497081|sp|Q57E81|RNC_BRUAB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|90101615|sp|Q2YN02|RNC_BRUA2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043295|sp|A9MA35|RNC_BRUC2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043296|sp|B0CKY7|RNC_BRUSI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|238691497|sp|B2SAD9|RNC_BRUA1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807239|sp|C0RI03|RNC_BRUMB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|17983275|gb|AAL52468.1| ribonuclease iii [Brucella melitensis bv. 1 str. 16M]
 gi|23347459|gb|AAN29590.1| ribonuclease III [Brucella suis 1330]
 gi|62195753|gb|AAX74053.1| ribonuclease III [Brucella abortus bv. 1 str. 9-941]
 gi|82615650|emb|CAJ10637.1| Ribonuclease III family:Double-stranded RNA binding (DsRBD) domain
           [Brucella melitensis biovar Abortus 2308]
 gi|161335442|gb|ABX61747.1| ribonuclease III [Brucella canis ATCC 23365]
 gi|163673656|gb|ABY37767.1| ribonuclease III [Brucella suis ATCC 23445]
 gi|189019447|gb|ACD72169.1| Ribonuclease III family [Brucella abortus S19]
 gi|225640547|gb|ACO00461.1| ribonuclease III [Brucella melitensis ATCC 23457]
 gi|255999259|gb|ACU47658.1| ribonuclease III [Brucella microti CCM 4915]
 gi|260872980|gb|EEX80049.1| ribonuclease III [Brucella abortus bv. 9 str. C68]
 gi|260920447|gb|EEX87100.1| ribonuclease III [Brucella ceti B1/94]
 gi|261300760|gb|EEY04257.1| ribonuclease III [Brucella neotomae 5K33]
 gi|262552295|gb|EEZ08285.1| ribonuclease III [Brucella ceti M490/95/1]
 gi|262765722|gb|EEZ11511.1| ribonuclease III [Brucella melitensis bv. 3 str. Ether]
 gi|263001557|gb|EEZ14132.1| ribonuclease III [Brucella melitensis bv. 1 str. Rev.1]
 gi|263094580|gb|EEZ18378.1| ribonuclease III family protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|264660557|gb|EEZ30818.1| ribonuclease III [Brucella pinnipedialis M292/94/1]
          Length = 245

 Score =  249 bits (635), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 119/220 (54%), Positives = 156/220 (70%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S LE+R G+ F N   LE+ALTHSS+    + +YERLEFLGDR+LGL ++ +LF  F  A
Sbjct: 20  SILEERTGHRFLNLKRLERALTHSSVQAPARANYERLEFLGDRVLGLTVAEMLFEAFPEA 79

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELSVR N+LV+AETC+ +A E+ LA  I   SD++      + +++ADVVE+LIA +
Sbjct: 80  SEGELSVRLNALVNAETCAAIADEIGLADLIHTGSDIKSLNDKRLLNVRADVVEALIATI 139

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           YLDGG+E A +F+ +YWK+R+L++G  RRDAKTELQEWAH +  V P Y +  RSGPDHD
Sbjct: 140 YLDGGLEAARSFIQRYWKKRSLETGAARRDAKTELQEWAHQQGNVHPVYAILSRSGPDHD 199

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           P F V V + G AP +G   SKR AEQ AA  +L REG+W
Sbjct: 200 PLFLVEVTVKGFAPEKGEGRSKRIAEQSAAEAMLYREGVW 239


>gi|237815116|ref|ZP_04594114.1| ribonuclease III [Brucella abortus str. 2308 A]
 gi|260545623|ref|ZP_05821364.1| ribonuclease III [Brucella abortus NCTC 8038]
 gi|260563710|ref|ZP_05834196.1| ribonuclease III [Brucella melitensis bv. 1 str. 16M]
 gi|260566758|ref|ZP_05837228.1| ribonuclease III family protein [Brucella suis bv. 4 str. 40]
 gi|260754424|ref|ZP_05866772.1| ribonuclease III [Brucella abortus bv. 6 str. 870]
 gi|260757643|ref|ZP_05869991.1| ribonuclease III [Brucella abortus bv. 4 str. 292]
 gi|260761470|ref|ZP_05873813.1| ribonuclease III [Brucella abortus bv. 2 str. 86/8/59]
 gi|261213670|ref|ZP_05927951.1| ribonuclease III [Brucella abortus bv. 3 str. Tulya]
 gi|261218969|ref|ZP_05933250.1| ribonuclease III [Brucella ceti M13/05/1]
 gi|261315123|ref|ZP_05954320.1| ribonuclease III [Brucella pinnipedialis M163/99/10]
 gi|261317321|ref|ZP_05956518.1| ribonuclease III [Brucella pinnipedialis B2/94]
 gi|261321532|ref|ZP_05960729.1| ribonuclease III [Brucella ceti M644/93/1]
 gi|261751989|ref|ZP_05995698.1| ribonuclease III [Brucella suis bv. 5 str. 513]
 gi|261754648|ref|ZP_05998357.1| ribonuclease III [Brucella suis bv. 3 str. 686]
 gi|261757876|ref|ZP_06001585.1| ribonuclease III family [Brucella sp. F5/99]
 gi|265983784|ref|ZP_06096519.1| ribonuclease III [Brucella sp. 83/13]
 gi|294852025|ref|ZP_06792698.1| ribonuclease III [Brucella sp. NVSL 07-0026]
 gi|297248033|ref|ZP_06931751.1| ribonuclease III [Brucella abortus bv. 5 str. B3196]
 gi|237789953|gb|EEP64163.1| ribonuclease III [Brucella abortus str. 2308 A]
 gi|260097030|gb|EEW80905.1| ribonuclease III [Brucella abortus NCTC 8038]
 gi|260153726|gb|EEW88818.1| ribonuclease III [Brucella melitensis bv. 1 str. 16M]
 gi|260156276|gb|EEW91356.1| ribonuclease III family protein [Brucella suis bv. 4 str. 40]
 gi|260667961|gb|EEX54901.1| ribonuclease III [Brucella abortus bv. 4 str. 292]
 gi|260671902|gb|EEX58723.1| ribonuclease III [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674532|gb|EEX61353.1| ribonuclease III [Brucella abortus bv. 6 str. 870]
 gi|260915277|gb|EEX82138.1| ribonuclease III [Brucella abortus bv. 3 str. Tulya]
 gi|260924058|gb|EEX90626.1| ribonuclease III [Brucella ceti M13/05/1]
 gi|261294222|gb|EEX97718.1| ribonuclease III [Brucella ceti M644/93/1]
 gi|261296544|gb|EEY00041.1| ribonuclease III [Brucella pinnipedialis B2/94]
 gi|261304149|gb|EEY07646.1| ribonuclease III [Brucella pinnipedialis M163/99/10]
 gi|261737860|gb|EEY25856.1| ribonuclease III family [Brucella sp. F5/99]
 gi|261741742|gb|EEY29668.1| ribonuclease III [Brucella suis bv. 5 str. 513]
 gi|261744401|gb|EEY32327.1| ribonuclease III [Brucella suis bv. 3 str. 686]
 gi|264662376|gb|EEZ32637.1| ribonuclease III [Brucella sp. 83/13]
 gi|294820614|gb|EFG37613.1| ribonuclease III [Brucella sp. NVSL 07-0026]
 gi|297175202|gb|EFH34549.1| ribonuclease III [Brucella abortus bv. 5 str. B3196]
 gi|326408683|gb|ADZ65748.1| Ribonuclease III family [Brucella melitensis M28]
 gi|326538408|gb|ADZ86623.1| ribonuclease III [Brucella melitensis M5-90]
          Length = 234

 Score =  248 bits (634), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 119/220 (54%), Positives = 156/220 (70%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S LE+R G+ F N   LE+ALTHSS+    + +YERLEFLGDR+LGL ++ +LF  F  A
Sbjct: 9   SILEERTGHRFLNLKRLERALTHSSVQAPARANYERLEFLGDRVLGLTVAEMLFEAFPEA 68

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELSVR N+LV+AETC+ +A E+ LA  I   SD++      + +++ADVVE+LIA +
Sbjct: 69  SEGELSVRLNALVNAETCAAIADEIGLADLIHTGSDIKSLNDKRLLNVRADVVEALIATI 128

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           YLDGG+E A +F+ +YWK+R+L++G  RRDAKTELQEWAH +  V P Y +  RSGPDHD
Sbjct: 129 YLDGGLEAARSFIQRYWKKRSLETGAARRDAKTELQEWAHQQGNVHPVYAILSRSGPDHD 188

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           P F V V + G AP +G   SKR AEQ AA  +L REG+W
Sbjct: 189 PLFLVEVTVKGFAPEKGEGRSKRIAEQSAAEAMLYREGVW 228


>gi|148560325|ref|YP_001258645.1| ribonuclease III [Brucella ovis ATCC 25840]
 gi|306837522|ref|ZP_07470397.1| ribonuclease III [Brucella sp. NF 2653]
 gi|306842074|ref|ZP_07474746.1| ribonuclease III [Brucella sp. BO2]
 gi|148371582|gb|ABQ61561.1| ribonuclease III [Brucella ovis ATCC 25840]
 gi|306287824|gb|EFM59247.1| ribonuclease III [Brucella sp. BO2]
 gi|306407414|gb|EFM63618.1| ribonuclease III [Brucella sp. NF 2653]
          Length = 257

 Score =  248 bits (633), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 119/220 (54%), Positives = 156/220 (70%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S LE+R G+ F N   LE+ALTHSS+    + +YERLEFLGDR+LGL ++ +LF  F  A
Sbjct: 32  SILEERTGHRFLNLKRLERALTHSSVQAPARANYERLEFLGDRVLGLTVAEMLFEAFPEA 91

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELSVR N+LV+AETC+ +A E+ LA  I   SD++      + +++ADVVE+LIA +
Sbjct: 92  SEGELSVRLNALVNAETCAAIADEIGLADLIHTGSDIKSLNDKRLLNVRADVVEALIATI 151

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           YLDGG+E A +F+ +YWK+R+L++G  RRDAKTELQEWAH +  V P Y +  RSGPDHD
Sbjct: 152 YLDGGLEAARSFIQRYWKKRSLETGAARRDAKTELQEWAHQQGNVHPVYAILSRSGPDHD 211

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           P F V V + G AP +G   SKR AEQ AA  +L REG+W
Sbjct: 212 PLFLVEVTVKGFAPEKGEGRSKRIAEQSAAEAMLYREGVW 251


>gi|306845262|ref|ZP_07477838.1| ribonuclease III [Brucella sp. BO1]
 gi|306274421|gb|EFM56228.1| ribonuclease III [Brucella sp. BO1]
          Length = 257

 Score =  248 bits (633), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 119/220 (54%), Positives = 156/220 (70%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S LE+R G+ F N   LE+ALTHSS+    + +YERLEFLGDR+LGL ++ +LF  F  A
Sbjct: 32  SILEERTGHRFLNLKRLERALTHSSVQAPARANYERLEFLGDRVLGLTVAEMLFEAFPEA 91

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELSVR N+LV+AETC+ +A E+ LA  I   SD++      + +++ADVVE+LIA +
Sbjct: 92  SEGELSVRLNALVNAETCAAIADEIGLADLIHTGSDIKSLNDKRLLNVRADVVEALIATI 151

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           YLDGG+E A +F+ +YWK+R+L++G  RRDAKTELQEWAH +  V P Y +  RSGPDHD
Sbjct: 152 YLDGGLEAARSFIQRYWKKRSLETGAARRDAKTELQEWAHQQGNVHPVYAILSRSGPDHD 211

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           P F V V + G AP +G   SKR AEQ AA  +L REG+W
Sbjct: 212 PLFLVEVTVKGFAPEKGEGRSKRIAEQSAAEAMLYREGVW 251


>gi|153009954|ref|YP_001371169.1| ribonuclease III [Ochrobactrum anthropi ATCC 49188]
 gi|151561842|gb|ABS15340.1| Ribonuclease III [Ochrobactrum anthropi ATCC 49188]
          Length = 234

 Score =  240 bits (613), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 114/220 (51%), Positives = 154/220 (70%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + LE+R G+ F N   L++ALTHSS+    + +YERLEFLGDR+LGL ++ +LF+ F  A
Sbjct: 9   AILEERTGHRFLNLKRLDRALTHSSVQAPSRANYERLEFLGDRVLGLTVAEMLFDEFPDA 68

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELSVR N+LV+AETC+ +A E+ LA+ I   SD++      + +++ADVVE+LIA +
Sbjct: 69  SEGELSVRLNALVNAETCAAIADEIGLANLIHTGSDIKSLNDKRLLNVRADVVEALIATI 128

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           YLDGG+E    FV +YW++R+L++G  RRDAKTELQEWAH +  V P Y +  R+GPDHD
Sbjct: 129 YLDGGLEAVRPFVKRYWEKRSLQTGAARRDAKTELQEWAHQQGNVHPSYAIISRTGPDHD 188

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           P F V V + G A   G   SKR AEQ AA  +L REG+W
Sbjct: 189 PLFAVEVTVKGFATETGEGRSKRIAEQNAAEAMLYREGVW 228


>gi|240850197|ref|YP_002971590.1| ribonuclease III [Bartonella grahamii as4aup]
 gi|240267320|gb|ACS50908.1| ribonuclease III [Bartonella grahamii as4aup]
          Length = 235

 Score =  239 bits (611), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 119/226 (52%), Positives = 151/226 (66%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M  L    L K  G+ F +   L+KALTHSS+  S Q +YERLEFLGDR+LGLLI+ +L+
Sbjct: 1   MKRLMIDQLFKLTGHRFKDEERLKKALTHSSVQDSEQGNYERLEFLGDRVLGLLIAEMLY 60

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELSVR N LV+A+TC+ +ARE+ L   IRV  +++      + ++ ADVVE
Sbjct: 61  QLFPQASEGELSVRLNHLVNAQTCADIAREMRLPDMIRVGFEMKNFEGRRLINMHADVVE 120

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +LIA +YLDGG+E    F+ KYW  RA K    RRDAKTELQEWAH +    P Y+V  R
Sbjct: 121 ALIAVIYLDGGLESVRPFIQKYWHSRAKKMDAGRRDAKTELQEWAHIQGNAQPHYQVIKR 180

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           SGPDHDP F V V ISG A   G   SKR AE++AA ++L+REG+W
Sbjct: 181 SGPDHDPVFMVEVSISGFASEIGQGSSKRYAERMAAEKILRREGVW 226


>gi|81647146|sp|Q6G082|RNC_BARQU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|49239570|emb|CAF25927.1| Ribonuclease III [Bartonella quintana str. Toulouse]
          Length = 235

 Score =  239 bits (609), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 117/226 (51%), Positives = 153/226 (67%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+      LE+   + F +   L+KALTHSS+  S Q +YERLEFLGDR+LGLLI+ +L+
Sbjct: 1   MNCPIIDQLERLTEHHFKDEERLKKALTHSSVQDSEQGNYERLEFLGDRVLGLLIAEMLY 60

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELSVR N LV+A+TC+ +A E+ L   I V  ++R      +T++ ADV+E
Sbjct: 61  KLFPQASEGELSVRLNGLVNAQTCADIALEMGLPDMIHVGFEMRNLKGRRLTNMHADVIE 120

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +LIA +YLDGG++    F+ +YW+ RA +    RRDAKTELQEWAH + GV P Y+V  R
Sbjct: 121 ALIAVMYLDGGLKSVRPFIRRYWQSRAKQMDAGRRDAKTELQEWAHVQGGVQPHYRVVKR 180

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           SGPDHDP F V V I G AP  G   SKR AE++AA +VL+REGIW
Sbjct: 181 SGPDHDPVFMVEVSILGFAPEIGQGNSKRCAERMAAEKVLRREGIW 226


>gi|161761284|ref|YP_032108.2| ribonuclease III [Bartonella quintana str. Toulouse]
          Length = 246

 Score =  238 bits (608), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 116/218 (53%), Positives = 151/218 (69%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE+   + F +   L+KALTHSS+  S Q +YERLEFLGDR+LGLLI+ +L+  F  A E
Sbjct: 20  LERLTEHHFKDEERLKKALTHSSVQDSEQGNYERLEFLGDRVLGLLIAEMLYKLFPQASE 79

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELSVR N LV+A+TC+ +A E+ L   I V  ++R      +T++ ADV+E+LIA +YL
Sbjct: 80  GELSVRLNGLVNAQTCADIALEMGLPDMIHVGFEMRNLKGRRLTNMHADVIEALIAVMYL 139

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           DGG++    F+ +YW+ RA +    RRDAKTELQEWAH + GV P Y+V  RSGPDHDP 
Sbjct: 140 DGGLKSVRPFIRRYWQSRAKQMDAGRRDAKTELQEWAHVQGGVQPHYRVVKRSGPDHDPV 199

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           F V V I G AP  G   SKR AE++AA +VL+REGIW
Sbjct: 200 FMVEVSILGFAPEIGQGNSKRCAERMAAEKVLRREGIW 237


>gi|163867992|ref|YP_001609196.1| ribonuclease III [Bartonella tribocorum CIP 105476]
 gi|189043294|sp|A9IRN0|RNC_BART1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|161017643|emb|CAK01201.1| ribonuclease III [Bartonella tribocorum CIP 105476]
          Length = 235

 Score =  237 bits (605), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 117/226 (51%), Positives = 152/226 (67%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M  L    L K  G+ F +   L++ALTH+S+  S Q +YERLEFLGDR+LGLLI+ +L+
Sbjct: 1   MRRLMIDQLFKLTGHRFKDEEKLKRALTHASVQDSEQGNYERLEFLGDRVLGLLIAEMLY 60

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELSVR N LV+A+TC+ +ARE+ L   I+V  ++R      + ++ ADVVE
Sbjct: 61  QLFPQASEGELSVRLNHLVNAQTCADIAREMRLPDMIQVGFEMRNFEGRRLINMHADVVE 120

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +LIA +YLDGG+E    F+ KYW+ RA K    RRDAKTELQEWAH +    P Y+V  R
Sbjct: 121 ALIAVMYLDGGLESVRPFIQKYWQSRAKKMDAGRRDAKTELQEWAHIQGDAQPHYQVIKR 180

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           SGPDHDP F V V ISG A   G   SKR AE++AA ++L+REG+W
Sbjct: 181 SGPDHDPVFMVEVSISGFASEIGQGSSKRNAERMAAEKILRREGVW 226


>gi|239831496|ref|ZP_04679825.1| ribonuclease III [Ochrobactrum intermedium LMG 3301]
 gi|239823763|gb|EEQ95331.1| ribonuclease III [Ochrobactrum intermedium LMG 3301]
          Length = 234

 Score =  236 bits (603), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 112/220 (50%), Positives = 153/220 (69%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + LE+R G+ F N   L++ALTHSS+    + +YERLEFLGDR+LGL ++ +L++ F  A
Sbjct: 9   AILEERTGHRFLNVKRLDRALTHSSVQAPSRANYERLEFLGDRVLGLTVAEMLYDEFPEA 68

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELSVR N+LV+AETC+ +A E+ LA  I   SD++      + +++ADVVE+LIA +
Sbjct: 69  SEGELSVRLNALVNAETCAAIADEIGLADLIHTGSDIKSLNDKRLLNVRADVVEALIATI 128

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           YLDGG++    FV ++WK+R+L++G  RRDAKTELQEWAH +  V P Y +  R+GPDHD
Sbjct: 129 YLDGGLDAVRPFVKRFWKKRSLQTGAARRDAKTELQEWAHQQGNVHPAYSIISRTGPDHD 188

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           P F V V + G A   G   SKR AEQ AA  +L REG+W
Sbjct: 189 PLFMVEVTVKGFAAETGEGRSKRIAEQHAAEAMLYREGVW 228


>gi|161761286|ref|YP_033345.2| ribonuclease III [Bartonella henselae str. Houston-1]
          Length = 246

 Score =  235 bits (599), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 116/218 (53%), Positives = 154/218 (70%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LEK  G+ F ++  L+KALTHSS+  S Q +YERLEFLGDR+LGLLI+ +L+  F  A E
Sbjct: 20  LEKLTGHYFKDKKKLKKALTHSSVQGSEQGNYERLEFLGDRVLGLLIAEMLYQLFPQASE 79

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELSVR NSLV+A+TC+ +A E++L   I V  +++      +T++ ADV+E+LIA +YL
Sbjct: 80  GELSVRLNSLVNAQTCADIALEMELPVMIHVGFEMKNLKGRRLTNMYADVIEALIAVIYL 139

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           DGG+E    F+ +YW+ RA +    RRDAKT+LQEWAH + GV P Y+V  RSGPDHDP 
Sbjct: 140 DGGLESVRPFIQRYWQSRAKQMDAGRRDAKTQLQEWAHVQGGVQPHYRVVKRSGPDHDPV 199

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           F V V I G A   G   SKR AE++AA ++L+REGIW
Sbjct: 200 FMVEVSIPGFASEIGQGNSKRCAERMAAEKILRREGIW 237


>gi|81648073|sp|Q6G459|RNC_BARHE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|49238110|emb|CAF27317.1| Ribonuclease III [Bartonella henselae str. Houston-1]
          Length = 235

 Score =  235 bits (599), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 116/218 (53%), Positives = 154/218 (70%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LEK  G+ F ++  L+KALTHSS+  S Q +YERLEFLGDR+LGLLI+ +L+  F  A E
Sbjct: 9   LEKLTGHYFKDKKKLKKALTHSSVQGSEQGNYERLEFLGDRVLGLLIAEMLYQLFPQASE 68

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELSVR NSLV+A+TC+ +A E++L   I V  +++      +T++ ADV+E+LIA +YL
Sbjct: 69  GELSVRLNSLVNAQTCADIALEMELPVMIHVGFEMKNLKGRRLTNMYADVIEALIAVIYL 128

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           DGG+E    F+ +YW+ RA +    RRDAKT+LQEWAH + GV P Y+V  RSGPDHDP 
Sbjct: 129 DGGLESVRPFIQRYWQSRAKQMDAGRRDAKTQLQEWAHVQGGVQPHYRVVKRSGPDHDPV 188

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           F V V I G A   G   SKR AE++AA ++L+REGIW
Sbjct: 189 FMVEVSIPGFASEIGQGNSKRCAERMAAEKILRREGIW 226


>gi|121602768|ref|YP_988789.1| ribonuclease III [Bartonella bacilliformis KC583]
 gi|189043293|sp|A1US36|RNC_BARBK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|120614945|gb|ABM45546.1| ribonuclease III [Bartonella bacilliformis KC583]
          Length = 235

 Score =  234 bits (598), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 111/218 (50%), Positives = 150/218 (68%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L+K  G++F N  LL+KALTHSS+  S Q +YERLEFLGDR+LGLL++ +L+  F  A E
Sbjct: 9   LKKLTGHSFKNEDLLKKALTHSSVQRSEQGNYERLEFLGDRVLGLLVAEMLYQFFPQASE 68

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELSVR N LV+A+TC+ +ARE+ L   + V  +++      + ++ ADVVE+LIA +YL
Sbjct: 69  GELSVRLNGLVNAQTCADIAREIGLPDMVHVGCEMKNLEGRRLANMHADVVEALIAVIYL 128

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           DGG++    F+ +YW+ RA K    RRDAKTELQEWAH + GV P+Y+V  R G DHDP 
Sbjct: 129 DGGLKSVRPFIQRYWQDRAKKIDASRRDAKTELQEWAHTQNGVQPQYRVIKRCGLDHDPV 188

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           F V V + G     G   SKR AE+ AA ++L+REG+W
Sbjct: 189 FVVEVSVPGFVSEVGEGGSKRHAERAAAEKILRREGMW 226


>gi|90420862|ref|ZP_01228767.1| ribonuclease III [Aurantimonas manganoxydans SI85-9A1]
 gi|90334837|gb|EAS48609.1| ribonuclease III [Aurantimonas manganoxydans SI85-9A1]
          Length = 252

 Score =  233 bits (594), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 122/224 (54%), Positives = 152/224 (67%), Gaps = 6/224 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSY------QESYERLEFLGDRILGLLISTLLFNH 62
           LE RIG  F  ++  E+ALTHSS+  S       + SYERLEFLGDR+LGL+++  LF+ 
Sbjct: 25  LESRIGITFHEKARFERALTHSSLRSSKGGKGEGERSYERLEFLGDRVLGLVVAEKLFDM 84

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F  A EGELS+R NSLVSA+TC+++A EL L  F+R   DL+K       SI+AD+VESL
Sbjct: 85  FPGADEGELSLRLNSLVSADTCAEIADELGLYEFVRHGGDLKKLKSDRTKSIRADLVESL 144

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           IAA+YL  G+E A  F+ +YW  R  KS   RRDAKT LQEWAH +  VTP+Y++  RSG
Sbjct: 145 IAAIYLGEGLETARDFIVRYWGGRLGKSVAARRDAKTALQEWAHTRGPVTPQYEIVERSG 204

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           PDHDP FTV V I  +APA G   S+R AEQ AA  VL RE +W
Sbjct: 205 PDHDPLFTVRVSIPDVAPADGQGRSRRIAEQEAATAVLIRESVW 248


>gi|319408283|emb|CBI81936.1| ribonuclease III [Bartonella schoenbuchensis R1]
          Length = 236

 Score =  233 bits (594), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 110/218 (50%), Positives = 151/218 (69%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LEK  G+ F N + L++ALTHSS+    + +YERLEFLGDR+LGLL++ +L+  F  A E
Sbjct: 10  LEKLTGHRFKNENRLKRALTHSSVQGLAEGNYERLEFLGDRVLGLLVAEMLYQFFPHASE 69

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELSVR N LV+ +TC+++A E+ L   I V  +++      + ++ ADV+E+LIA +YL
Sbjct: 70  GELSVRLNGLVNTQTCAEIALEMGLPDMIHVGFEMKNLENRRVANMYADVIEALIAVMYL 129

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           DG +E   +F+ KYW+ RA K    RRDAKTELQEWAH + G  P+Y+V  R GPDHDP 
Sbjct: 130 DGDLECVRSFIRKYWQDRARKMDAGRRDAKTELQEWAHTQDGAQPQYRVVKRYGPDHDPI 189

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           F V V++ G AP  G   SKR AE+VAA ++L+REG+W
Sbjct: 190 FMVEVKVFGFAPEIGQGSSKRHAERVAAEKILRREGVW 227


>gi|114706260|ref|ZP_01439162.1| ribonuclease III [Fulvimarina pelagi HTCC2506]
 gi|114538121|gb|EAU41243.1| ribonuclease III [Fulvimarina pelagi HTCC2506]
          Length = 234

 Score =  231 bits (588), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 116/220 (52%), Positives = 154/220 (70%), Gaps = 2/220 (0%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66
           LEKRIG  F++   L++ALTHSS   S  +  SYERLEFLGDR+LGL+++  LF  F +A
Sbjct: 11  LEKRIGVRFSDHDRLQRALTHSSFRSSKGDGRSYERLEFLGDRVLGLVVADKLFEMFPNA 70

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS+R NSLV+AETC+ VA E+ L  F+R   DLRK   S   SI+AD++ESLIAA+
Sbjct: 71  DEGELSLRLNSLVNAETCAAVADEIGLYEFVRQGGDLRKLAASRTKSIRADLMESLIAAI 130

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           YL+ G++ A  F++ +W +R  KS   RRD KT LQEWAH +    P+Y+V  RSGPDH+
Sbjct: 131 YLNSGLDDARAFIESHWGERLNKSVAARRDPKTALQEWAHQRGPEPPKYEVVDRSGPDHN 190

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           P+F + V I+G+ P++G   SKR AEQ AA  +L RE +W
Sbjct: 191 PKFRIKVSIAGVDPSEGEGSSKRLAEQSAATAMLIRENVW 230


>gi|319404018|emb|CBI77606.1| ribonuclease III [Bartonella rochalimae ATCC BAA-1498]
          Length = 227

 Score =  229 bits (584), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 112/218 (51%), Positives = 145/218 (66%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LEK  G++F +   L++ALTHSS+  S Q +YERLEFLGDR+LGLLI+ +L+  F  A E
Sbjct: 9   LEKLTGHSFKDADRLKRALTHSSVQSSEQGNYERLEFLGDRVLGLLIAEMLYQIFPQASE 68

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELSVR N LV+A+TC+ +A E+ L   + V  +++      + +I ADV+E+LIA +YL
Sbjct: 69  GELSVRLNGLVNAQTCADIALEMGLPDMVHVGCEMKNLEGRRLVNIYADVIEALIAVIYL 128

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           DGG+E     + +YW  RA K    RRDAKTELQEWAH +    P Y+V  R GPDHDP 
Sbjct: 129 DGGLESVRPVIQRYWHDRAQKMNAGRRDAKTELQEWAHTQDSAQPYYQVVQRYGPDHDPV 188

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           F V V I G AP  G   SKR AE+ AA  +L+REGIW
Sbjct: 189 FMVEVSICGYAPEIGRGSSKRQAERDAAERILRREGIW 226


>gi|319407031|emb|CBI80668.1| ribonuclease III [Bartonella sp. 1-1C]
          Length = 227

 Score =  229 bits (583), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 111/218 (50%), Positives = 145/218 (66%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LEK  G++F +   L++ALTHSS+  S Q +YERLEFLGDR+LGLLI+ +L+  F  A E
Sbjct: 9   LEKLTGHSFKDADRLKRALTHSSVQSSEQGNYERLEFLGDRVLGLLIAEMLYQIFPQASE 68

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELSVR N LV+A+TC+ +A E+ L   + V  +++      + +I ADV+E+LIA +YL
Sbjct: 69  GELSVRLNGLVNAQTCADIALEMGLPDMVHVGCEMKNLEGRRLVNIYADVIEALIAVIYL 128

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           DGG+E     + +YW  RA K    RRD+KTELQEWAH +    P Y+V  R GPDHDP 
Sbjct: 129 DGGLESVRPVIQRYWHDRAKKMNAGRRDSKTELQEWAHTQDSAQPHYQVVQRYGPDHDPV 188

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           F V V I G AP  G   SKR AE+ AA  +L+REGIW
Sbjct: 189 FMVEVSICGYAPEIGRGSSKRQAERDAAERILRREGIW 226


>gi|319898692|ref|YP_004158785.1| ribonuclease III [Bartonella clarridgeiae 73]
 gi|319402656|emb|CBI76202.1| ribonuclease III [Bartonella clarridgeiae 73]
          Length = 234

 Score =  229 bits (583), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 113/218 (51%), Positives = 147/218 (67%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE+   ++F +   L+KALTHSS+  S Q +YERLEFLGDR+LGLLI+ +L+  F  A E
Sbjct: 9   LERLTEHSFKDADKLKKALTHSSVQSSEQGNYERLEFLGDRVLGLLIAEMLYQIFPQASE 68

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELSVR N LV+A+TC+ +A E+ L + IRV  +++      + ++ ADV+E+LIA +YL
Sbjct: 69  GELSVRLNGLVNAQTCADIALEMGLPNMIRVGCEMKNLEGRRLANMYADVIEALIAVIYL 128

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           +GG+E    F+ KYW+ RA K    RRDAKTELQEWAH K    P Y+V  R GPDHDP 
Sbjct: 129 EGGLESVRPFIQKYWQNRAKKMNAGRRDAKTELQEWAHTKDRAHPHYQVLQRCGPDHDPI 188

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           F V V I G A   G   SKR AE+ AA  +L+REGIW
Sbjct: 189 FVVEVSICGFASEIGRGSSKRQAERDAAERILRREGIW 226


>gi|319405458|emb|CBI79077.1| ribonuclease III [Bartonella sp. AR 15-3]
          Length = 235

 Score =  227 bits (578), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 109/218 (50%), Positives = 146/218 (66%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LEK  G++F +   L++ALTH+S+  S   +YERLEFLGDR+LGLLI+ +L+  F  A E
Sbjct: 9   LEKLTGHSFKDVDRLKRALTHASVQSSENGNYERLEFLGDRVLGLLIAEMLYKIFPQASE 68

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELSVR N LV+A+TC+ +A E+ L+  + V  +++      + ++ ADV+E+LIA +YL
Sbjct: 69  GELSVRLNGLVNAQTCADIALEMGLSDMVHVGCEMKNLEGRRLANVYADVIEALIAVIYL 128

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           DGG+E     + +YW+ RA K    RRDAKTELQEWAH +    P Y+V  R GPDHDP 
Sbjct: 129 DGGLESVRPVIQRYWQDRAKKMNAGRRDAKTELQEWAHTQDNAQPHYQVVQRYGPDHDPI 188

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           F V V I G AP  G   SKR AE+ AA  +L+REGIW
Sbjct: 189 FIVEVSICGYAPEIGRGSSKRQAERDAAERILRREGIW 226


>gi|328543513|ref|YP_004303622.1| ribonuclease III [polymorphum gilvum SL003B-26A1]
 gi|326413257|gb|ADZ70320.1| Ribonuclease III [Polymorphum gilvum SL003B-26A1]
          Length = 234

 Score =  218 bits (555), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 111/223 (49%), Positives = 146/223 (65%), Gaps = 3/223 (1%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           TLE R+GY+F +++LL +ALTH+S      + + SY+RLEFLGDR+LGL ++T+L  HF 
Sbjct: 11  TLEGRLGYSFQDKALLMQALTHASALNAGGAARGSYQRLEFLGDRVLGLAVATMLHRHFP 70

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            A EGEL+ R N +V  ETC+ +A ELDL   +R+S    +      T++ AD+ E++IA
Sbjct: 71  LADEGELARRLNHMVKRETCADIALELDLGEAMRISQSEAQTGGRRKTALLADICEAVIA 130

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A+YLDGG   A  FV + W+ R L      RDAKT LQEWA +K    P Y+VT R GPD
Sbjct: 131 AIYLDGGFPAAEDFVRRLWEPRMLAWSGPLRDAKTTLQEWAQSKGLPAPGYQVTTREGPD 190

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           H P F V V +SG AP +G   SKR AEQ AA  VL+REG+WT
Sbjct: 191 HAPVFVVAVTVSGYAPGEGRGGSKRIAEQNAAEAVLRREGVWT 233


>gi|304392070|ref|ZP_07374012.1| ribonuclease III [Ahrensia sp. R2A130]
 gi|303296299|gb|EFL90657.1| ribonuclease III [Ahrensia sp. R2A130]
          Length = 244

 Score =  214 bits (545), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 114/227 (50%), Positives = 154/227 (67%), Gaps = 2/227 (0%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLL 59
           S  R + LE+ IGY FA+   L++ALTH+S +    ++  YERLEFLGDR+LG+ I+ +L
Sbjct: 6   STNRIAELEELIGYTFASHDRLKRALTHASATRKPGDNSHYERLEFLGDRVLGVCIAEML 65

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F  F +A EGELSVR N+LVS +TC+ +A E+ L +FI   +D++      M S++ADVV
Sbjct: 66  FETFPTAPEGELSVRLNALVSGKTCAAIADEIGLHAFITTGNDVKHVTGKRMRSVRADVV 125

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           ES+IAA+YLDGG+E A  F+ +YW  R  ++G   RD+KT LQEWAH   G TP Y +  
Sbjct: 126 ESVIAAIYLDGGLEPARDFITRYWAGRLHETGAGIRDSKTALQEWAHTHSGETPVYTLVE 185

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           ++GPDHDP F + V I G++   G   SKRAAEQ AA  VL REG+W
Sbjct: 186 KTGPDHDPLFKISVAIHGVSGGNGAGRSKRAAEQAAARAVLLREGVW 232


>gi|110633304|ref|YP_673512.1| ribonuclease III [Mesorhizobium sp. BNC1]
 gi|110284288|gb|ABG62347.1| RNAse III [Chelativorans sp. BNC1]
          Length = 238

 Score =  213 bits (541), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 106/219 (48%), Positives = 143/219 (65%), Gaps = 1/219 (0%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           + +RIG +F +  LLE+ALTHSS +      Y+RLEFLGDR+LGL ++ +L+  +  A E
Sbjct: 15  VNERIGLSFRDAELLERALTHSS-ARGKGGDYQRLEFLGDRVLGLAVAEMLYEAYPDASE 73

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELS+R NSLV+AET +++  EL L + IR  SDL+        +++ADV+E+LIA +YL
Sbjct: 74  GELSLRLNSLVNAETLAEITEELGLDTLIRTGSDLKALAMRKQVNLRADVLEALIAVIYL 133

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
             G++ A  F+  +W +R+   G  R DAKT LQEWAH     TP+Y +  R GPDHDP 
Sbjct: 134 QDGLDGARQFIRTHWTERSTAEGAARADAKTALQEWAHRVSSATPDYVIESREGPDHDPV 193

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           FT VV I+G    +G   SKR AEQ AA EVL RE +WT
Sbjct: 194 FTAVVRIAGFQEGRGRGRSKREAEQAAATEVLIREAVWT 232


>gi|118587961|ref|ZP_01545371.1| Ribonuclease III [Stappia aggregata IAM 12614]
 gi|118439583|gb|EAV46214.1| Ribonuclease III [Stappia aggregata IAM 12614]
          Length = 236

 Score =  210 bits (535), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 108/223 (48%), Positives = 143/223 (64%), Gaps = 3/223 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           S L+  + Y F +  LL  ALTH+S    S +   SY+RLEFLGDR+LGL+I+++L  HF
Sbjct: 12  SALKNALQYEFRDLELLRVALTHASALPPSETVAGSYQRLEFLGDRVLGLVIASMLHKHF 71

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EGEL+ RFN +V  ETC+++A+EL +   +R+     +      T++ AD+ ES+I
Sbjct: 72  PRADEGELARRFNHMVKRETCAEIAQELGVGDAMRIGLAEAQTGGRKKTALLADICESVI 131

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           AA+YLDGG E A +F+ + W+ R L      RDAKT LQEWA +K   TP Y VT R GP
Sbjct: 132 AAIYLDGGFEAAESFITRLWEPRMLSWSGPLRDAKTTLQEWAQSKSLPTPRYDVTSRDGP 191

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           DH P FTV V + GL P +G   SKR AEQ AA  VL+REG+W
Sbjct: 192 DHAPNFTVSVTVQGLPPGEGKGGSKRIAEQNAAEAVLRREGVW 234


>gi|218663008|ref|ZP_03518938.1| ribonuclease III [Rhizobium etli IE4771]
          Length = 206

 Score =  208 bits (529), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 98/159 (61%), Positives = 127/159 (79%)

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           + ELSVR N LVSAETC+ VA EL+L  +IR  +D++K     M +++ADVVESLIAA+Y
Sbjct: 41  KAELSVRLNQLVSAETCAAVADELNLHLYIRTGADVKKLTGKRMMNVRADVVESLIAAIY 100

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           LDGG+EVA  F+ +YW+ RA+++   +RDAKTELQEW+HAKFGVTP Y+V  RSGPDHDP
Sbjct: 101 LDGGLEVARRFILRYWQGRAVRADGAKRDAKTELQEWSHAKFGVTPIYRVDERSGPDHDP 160

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           RF V VE++G+ P  G++ SKRAAEQVAA ++L+REGIW
Sbjct: 161 RFKVTVEVAGIKPETGVERSKRAAEQVAATKMLEREGIW 199


>gi|307946585|ref|ZP_07661920.1| ribonuclease III [Roseibium sp. TrichSKD4]
 gi|307770249|gb|EFO29475.1| ribonuclease III [Roseibium sp. TrichSKD4]
          Length = 235

 Score =  207 bits (526), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 103/222 (46%), Positives = 143/222 (64%), Gaps = 3/222 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           L +R+ Y F +  L+ KALTH+S         +SY+RLEFLGDR+LGL+++T+L  +F  
Sbjct: 13  LSERLHYTFKDEKLIRKALTHASALEPGEGDDQSYQRLEFLGDRVLGLVVATMLHKNFPK 72

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A EGEL+ RFN +V  ETC+++A+EL+L   +R+     +      T++ AD+ E++IAA
Sbjct: 73  ADEGELARRFNHMVKRETCAEIAQELNLGDAMRIGHSEAQTGGRKKTALLADICEAVIAA 132

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           +YLDGG + A  F+ ++WK+R L      RDAKT LQEWA +K   TP Y+V  R GPDH
Sbjct: 133 IYLDGGFDAATAFIQRFWKKRMLSWTGPLRDAKTTLQEWAQSKSLPTPFYEVISRDGPDH 192

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
            P F V V + GL   +G   SKR AEQ AA  VL+REG+W 
Sbjct: 193 APIFVVAVAVKGLENGEGKGGSKRLAEQNAAEAVLRREGVWN 234


>gi|254469250|ref|ZP_05082655.1| ribonuclease III [Pseudovibrio sp. JE062]
 gi|211961085|gb|EEA96280.1| ribonuclease III [Pseudovibrio sp. JE062]
          Length = 235

 Score =  206 bits (525), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 103/224 (45%), Positives = 146/224 (65%), Gaps = 3/224 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSS---ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           + LE+RIGY F N+ LL +ALTH+S   ++ +  +SY+RLEFLGDR+LGL I+T+L  +F
Sbjct: 11  AALEERIGYKFTNKELLVRALTHASALPVAKASLQSYQRLEFLGDRVLGLAIATMLEENF 70

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EGEL+ R N LV  ETC++V++ + +   +RV            T+I AD+ ESLI
Sbjct: 71  PKADEGELARRLNQLVKRETCAEVSKVIGIGQHMRVGEAEAHTGGRTKTAILADMCESLI 130

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           AA+YLD G + A  F+ +Y+ +R +      RDAKT LQEWA +K   TP+Y+   RSGP
Sbjct: 131 AAIYLDSGFDEAENFIKRYFAERMVSYTGPLRDAKTTLQEWAQSKGRPTPQYETISRSGP 190

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           DH P F + V + G+ P + +  SKR AEQ AA  +L+REG+W+
Sbjct: 191 DHAPIFKIRVNVEGVDPGEAVGSSKRIAEQSAAENILRREGVWS 234


>gi|161621443|ref|NP_108012.2| ribonuclease III [Mesorhizobium loti MAFF303099]
          Length = 237

 Score =  206 bits (523), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 112/221 (50%), Positives = 145/221 (65%), Gaps = 1/221 (0%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQES-YERLEFLGDRILGLLISTLLFNHFDSA 66
            L +R G+AFA+R  L++ALTH+S   +   + YER EFLGDR+LGL+++ +L   F  A
Sbjct: 15  ALVERTGHAFADRQRLQRALTHASARGANAGTDYERFEFLGDRVLGLVVADMLLAAFPDA 74

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS+R N+LV+AE  S++A  + L   IR  SD+R        +++AD +ESLIA L
Sbjct: 75  AEGELSLRLNALVNAEALSEIAEHIGLPDLIRAGSDVRGLEGRKRVNLRADALESLIAVL 134

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           YLDGG+E A  F+ KYW+ R+  SG  RRDAKTELQEWAH      P Y++  R GPDHD
Sbjct: 135 YLDGGLEAARAFIHKYWQPRSQASGAARRDAKTELQEWAHQAASAVPAYQIDSREGPDHD 194

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           P FTV V +    PA G   SKR AEQ AAA +L REG+W 
Sbjct: 195 PLFTVSVRVGAFQPATGSGRSKREAEQAAAAALLLREGVWN 235


>gi|81776564|sp|Q985A6|RNC_RHILO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|14027203|dbj|BAB54157.1| ribonuclease III [Mesorhizobium loti MAFF303099]
          Length = 221

 Score =  205 bits (521), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 111/218 (50%), Positives = 144/218 (66%), Gaps = 1/218 (0%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQES-YERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           +R G+AFA+R  L++ALTH+S   +   + YER EFLGDR+LGL+++ +L   F  A EG
Sbjct: 2   ERTGHAFADRQRLQRALTHASARGANAGTDYERFEFLGDRVLGLVVADMLLAAFPDAAEG 61

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           ELS+R N+LV+AE  S++A  + L   IR  SD+R        +++AD +ESLIA LYLD
Sbjct: 62  ELSLRLNALVNAEALSEIAEHIGLPDLIRAGSDVRGLEGRKRVNLRADALESLIAVLYLD 121

Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
           GG+E A  F+ KYW+ R+  SG  RRDAKTELQEWAH      P Y++  R GPDHDP F
Sbjct: 122 GGLEAARAFIHKYWQPRSQASGAARRDAKTELQEWAHQAASAVPAYQIDSREGPDHDPLF 181

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           TV V +    PA G   SKR AEQ AAA +L REG+W 
Sbjct: 182 TVSVRVGAFQPATGSGRSKREAEQAAAAALLLREGVWN 219


>gi|39935763|ref|NP_948039.1| ribonuclease III [Rhodopseudomonas palustris CGA009]
 gi|192291350|ref|YP_001991955.1| ribonuclease III [Rhodopseudomonas palustris TIE-1]
 gi|81562548|sp|Q6N6C1|RNC_RHOPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|39649616|emb|CAE28138.1| putative ribonuclease III [Rhodopseudomonas palustris CGA009]
 gi|192285099|gb|ACF01480.1| Ribonuclease III [Rhodopseudomonas palustris TIE-1]
          Length = 272

 Score =  204 bits (519), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 105/221 (47%), Positives = 142/221 (64%), Gaps = 2/221 (0%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           +E+R+G++FA+ SLL  A TH S   S +  +SY+RLEFLGD +LGL++S +L+  F  A
Sbjct: 47  IEQRLGHSFADPSLLTTAFTHVSALKSARRTDSYQRLEFLGDHVLGLIVSDMLYRAFPDA 106

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS R   LV  ETC+ VAR LDL   I++ +           S+  D+ E++I A+
Sbjct: 107 DEGELSKRLADLVRKETCADVARSLDLVEGIKLGTVGAGAGAKLRKSVLGDICEAVIGAI 166

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           YLDGG E A  FV + W +R  K  +  RD KT LQEWA A+   TP Y+   R+GP HD
Sbjct: 167 YLDGGYEAASDFVRRNWTERMRKPARSLRDPKTVLQEWAQARGLPTPVYREVERTGPHHD 226

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           P+F V V + GL PA+G+  SKRAAE+VAA+ +L REG+ T
Sbjct: 227 PQFRVAVILPGLEPAEGLGGSKRAAEKVAASAMLAREGVGT 267


>gi|316934144|ref|YP_004109126.1| ribonuclease III [Rhodopseudomonas palustris DX-1]
 gi|315601858|gb|ADU44393.1| ribonuclease III [Rhodopseudomonas palustris DX-1]
          Length = 272

 Score =  203 bits (516), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 105/219 (47%), Positives = 142/219 (64%), Gaps = 2/219 (0%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           +E+RIG++FA+ SLL  ALTH S   S +  +SY+RLEFLGD +LGL++S +L+  F  A
Sbjct: 47  IEQRIGHSFADPSLLTTALTHVSALKSARRTDSYQRLEFLGDHVLGLIVSDMLYRAFPDA 106

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS R   LV  E+C+ VAR LDL+  I++ +           S+  D+ E++I A+
Sbjct: 107 DEGELSKRLADLVRKESCADVARHLDLSEGIKIGTVGAGAGAKLRKSVLGDICEAVIGAV 166

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           YLDGG E A  FV   W +R  K  +  RD KT LQEWA A+   TP Y+   R+GP HD
Sbjct: 167 YLDGGYEAASNFVRSNWTERMHKPVRSLRDPKTVLQEWAQARGLPTPVYREVERTGPHHD 226

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           P+F V V + GL PA+G+  SKRAAE+VAA+ +L REG+
Sbjct: 227 PQFRVAVVLPGLEPAEGVGGSKRAAEKVAASAMLAREGV 265


>gi|114570121|ref|YP_756801.1| ribonuclease III [Maricaulis maris MCS10]
 gi|114340583|gb|ABI65863.1| RNAse III [Maricaulis maris MCS10]
          Length = 228

 Score =  202 bits (515), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 109/220 (49%), Positives = 139/220 (63%), Gaps = 6/220 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE+RIGY F ++ L+E+ALTH S +   +   +YERLEFLGDR+LGL+ +  LF  FD A
Sbjct: 8   LEQRIGYVFTDKRLIERALTHGSFAEGRKTIPTYERLEFLGDRVLGLMTAEALFKSFDKA 67

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG L+ R NS+V  ETC+ VAR +DL + +R+     K      TSI  D  ESL+AA+
Sbjct: 68  DEGALAPRLNSMVRKETCADVARAVDLGAALRIGKSEEKGGGRNKTSILGDACESLMAAI 127

Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLDGG      F D +W  R  ALK+     DAK+ LQEWA       P Y++T RSGPD
Sbjct: 128 YLDGGRAAVQAFFDHHWGPRIEALKAKPL--DAKSALQEWAAKTGRGVPRYELTERSGPD 185

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           H P FTV V ++ LAPA G   SK+ AE+ AA E+LKREG
Sbjct: 186 HRPVFTVQVTVTPLAPAVGEGGSKQVAERAAAEELLKREG 225


>gi|91977122|ref|YP_569781.1| ribonuclease III [Rhodopseudomonas palustris BisB5]
 gi|91683578|gb|ABE39880.1| RNAse III [Rhodopseudomonas palustris BisB5]
          Length = 271

 Score =  202 bits (513), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 104/222 (46%), Positives = 141/222 (63%), Gaps = 3/222 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65
           +E+RIG+ FA+ SLL  ALTH S   S +   +SY+RLEFLGD +LGL++S +L+  F +
Sbjct: 45  IEQRIGHTFADPSLLNTALTHVSALKSARNRADSYQRLEFLGDHVLGLVVSDMLYRAFPN 104

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A EGELS R   LV  ETC+ +AR LDL   I++ +           S+  D+ E++I A
Sbjct: 105 ADEGELSKRLADLVRKETCADIARSLDLLDGIKLGTVGAGAGARLRKSVLGDICEAVIGA 164

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           ++LDGG   A  FV + W +R  K  +  RD KT LQEWA  K   TP Y+   R+GP H
Sbjct: 165 VFLDGGYPAAADFVQRNWTERMRKPARSLRDPKTVLQEWAQGKGLPTPVYREVERTGPHH 224

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           DP+F V V + GL PA+G+  SKRAAE+VAA+ +L REG+ T
Sbjct: 225 DPQFRVAVSLPGLEPAEGVGGSKRAAEKVAASVMLAREGVST 266


>gi|260462323|ref|ZP_05810531.1| ribonuclease III [Mesorhizobium opportunistum WSM2075]
 gi|259031817|gb|EEW33085.1| ribonuclease III [Mesorhizobium opportunistum WSM2075]
          Length = 237

 Score =  201 bits (512), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 112/221 (50%), Positives = 142/221 (64%), Gaps = 1/221 (0%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHFDSA 66
            L +R G+AFA+R  L++ALTH+S   +     YER EFLGDR+LGL+++ +L   F  A
Sbjct: 15  ALVERTGHAFADRQRLQRALTHASARGANAGIDYERFEFLGDRVLGLVVADMLLAAFPDA 74

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS+R N+LV+AE  S +A  + L   IR  SD+R        +++AD +ESLIA L
Sbjct: 75  AEGELSLRLNALVNAEALSDIAEHIGLPDLIRAGSDIRGLDGRKRVNLRADALESLIAVL 134

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           YLDGG+E A  F+ KYW  R+  SG  RRDAKTELQEWAH      P Y++  R GPDHD
Sbjct: 135 YLDGGLEAARAFIHKYWLPRSQASGAARRDAKTELQEWAHQAASAVPAYQIDSREGPDHD 194

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           P FTV V +    PA G   SKR AEQ AAA +L REG+W 
Sbjct: 195 PLFTVSVRVGTFQPAVGSGRSKREAEQAAAAALLLREGVWN 235


>gi|86749730|ref|YP_486226.1| ribonuclease III [Rhodopseudomonas palustris HaA2]
 gi|86572758|gb|ABD07315.1| RNAse III [Rhodopseudomonas palustris HaA2]
          Length = 271

 Score =  200 bits (509), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 103/220 (46%), Positives = 141/220 (64%), Gaps = 3/220 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65
           +E+RIG++FA+ SLL  ALTH S   S +   +SY+RLEFLGD +LGL++S +L+  F +
Sbjct: 45  IEQRIGHSFADPSLLNTALTHVSALKSARNRADSYQRLEFLGDHVLGLVVSDMLYRAFPN 104

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A EGELS R   LV  ETC+ VAR LDL   +++ +           S+  D+ E++I A
Sbjct: 105 ADEGELSKRLADLVRKETCADVARSLDLDEGVKLGTVGAGAGARLRKSVLGDICEAVIGA 164

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           ++LDGG   A  FV + W +R  K  +  RD KT LQEWA  K   TP Y+   R+GP H
Sbjct: 165 VFLDGGYPAAAEFVQRNWTERMRKPTRSLRDPKTVLQEWAQGKGLPTPVYREVERTGPHH 224

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           DP+F V V + GL PA+G+  SKRAAE+VAA+ +L REG+
Sbjct: 225 DPQFRVAVSLPGLDPAEGVGGSKRAAEKVAASVMLAREGV 264


>gi|254503847|ref|ZP_05115998.1| ribonuclease III [Labrenzia alexandrii DFL-11]
 gi|222439918|gb|EEE46597.1| ribonuclease III [Labrenzia alexandrii DFL-11]
          Length = 235

 Score =  198 bits (503), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 102/223 (45%), Positives = 141/223 (63%), Gaps = 3/223 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           + L+  + Y F +  LL  +LTH+S    + +   SY+RLEFLGDR+LGL+++++L +HF
Sbjct: 11  AALKAALAYEFKDLELLRVSLTHASALDPADTVAGSYQRLEFLGDRVLGLVVASMLHHHF 70

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EGEL+ RFN +V  ETC+++A EL +   +R+     +      T++ AD+ E++I
Sbjct: 71  PKADEGELARRFNHMVKRETCAEIASELGVGDAMRIGQAEAQTGGRKKTALLADICEAII 130

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           AA+YLDGG E A  FV + W+ R L      RDAKT LQEWA +K   TP Y+V  R GP
Sbjct: 131 AAIYLDGGFEAADEFVRRLWEPRMLSWTGPLRDAKTTLQEWAQSKSLPTPHYEVASREGP 190

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           DH P FTV V + GL   +G   SKR AEQ AA  VL+REG+W
Sbjct: 191 DHAPSFTVSVIVQGLKNGEGKGGSKRIAEQHAAEAVLRREGVW 233


>gi|90424139|ref|YP_532509.1| ribonuclease III [Rhodopseudomonas palustris BisB18]
 gi|90106153|gb|ABD88190.1| RNAse III [Rhodopseudomonas palustris BisB18]
          Length = 272

 Score =  197 bits (500), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 103/217 (47%), Positives = 140/217 (64%), Gaps = 3/217 (1%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           RIG+AFA+ +LL  A TH S   S +   +SY+RLEFLGD +LGL++S +L+  F +A E
Sbjct: 49  RIGHAFADPALLATAFTHVSALKSARNRADSYQRLEFLGDHVLGLVVSDMLYRAFPNADE 108

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELS R   LV  E C+ VAR LDL   I++ +           S+  D+ E++I A++L
Sbjct: 109 GELSKRLADLVRKEACADVARSLDLLDGIKLGTVGAGAGARLRKSVLGDICEAVIGAIFL 168

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           DGG   A +FV + W +R  K  +  RDAKT LQEWA  K   TP Y+   R+GP HDP+
Sbjct: 169 DGGYPAAESFVQRNWLERMRKPVRPLRDAKTILQEWAQGKGLPTPVYREVERTGPHHDPQ 228

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           F V V++ GLAPA+G+  SKRAAE+VAA+ +L REG+
Sbjct: 229 FRVAVDLPGLAPAEGIGGSKRAAEKVAASVMLAREGV 265


>gi|30179749|sp|O69161|RNC_BRAJA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
          Length = 250

 Score =  195 bits (495), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 100/222 (45%), Positives = 144/222 (64%), Gaps = 3/222 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHF 63
           + LE RIG++FA+ +LL + +TH S   S +   +SY+RLEFLGD +LGL++S +L++ F
Sbjct: 23  AALEARIGHSFADPNLLMQGITHVSALKSGRKRGDSYQRLEFLGDHVLGLVVSDMLYHAF 82

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            +A EGELS R   LV  E+C+ VA+ L L   I++ S           S+  D+ E++I
Sbjct: 83  PNADEGELSKRLAELVRKESCADVAKSLGLLDDIKLGSVGPSADARLRKSVLGDICEAVI 142

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            A++LDGG   A  FV + W +R  K  +  RD KT LQEWA  K   TP Y+   R+GP
Sbjct: 143 GAIFLDGGHAAAAEFVKRNWTERMHKPRRPLRDPKTVLQEWAQGKGLPTPVYREVERTGP 202

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            HDP+F V V++ GLAPA+G+  SKRAAE+VAA+ +++REG+
Sbjct: 203 HHDPQFRVAVDLPGLAPAEGIGGSKRAAEKVAASVMIEREGV 244


>gi|27380172|ref|NP_771701.1| RNase III [Bradyrhizobium japonicum USDA 110]
 gi|27353326|dbj|BAC50326.1| RNase III [Bradyrhizobium japonicum USDA 110]
          Length = 273

 Score =  195 bits (495), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 100/222 (45%), Positives = 144/222 (64%), Gaps = 3/222 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHF 63
           + LE RIG++FA+ +LL + +TH S   S +   +SY+RLEFLGD +LGL++S +L++ F
Sbjct: 46  AALEARIGHSFADPNLLMQGITHVSALKSGRKRGDSYQRLEFLGDHVLGLVVSDMLYHAF 105

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            +A EGELS R   LV  E+C+ VA+ L L   I++ S           S+  D+ E++I
Sbjct: 106 PNADEGELSKRLAELVRKESCADVAKSLGLLDDIKLGSVGPSADARLRKSVLGDICEAVI 165

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            A++LDGG   A  FV + W +R  K  +  RD KT LQEWA  K   TP Y+   R+GP
Sbjct: 166 GAIFLDGGHAAAAEFVKRNWTERMHKPRRPLRDPKTVLQEWAQGKGLPTPVYREVERTGP 225

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            HDP+F V V++ GLAPA+G+  SKRAAE+VAA+ +++REG+
Sbjct: 226 HHDPQFRVAVDLPGLAPAEGIGGSKRAAEKVAASVMIEREGV 267


>gi|146341377|ref|YP_001206425.1| ribonuclease III (modular protein) [Bradyrhizobium sp. ORS278]
 gi|146194183|emb|CAL78204.1| ribonuclease III (modular protein) [Bradyrhizobium sp. ORS278]
          Length = 357

 Score =  194 bits (493), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 100/217 (46%), Positives = 137/217 (63%), Gaps = 3/217 (1%)

Query: 12  RIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           RIG+ FA+ SLL  A TH S    S    +SY+RLEFLGD +LGL++S +L+  F SA E
Sbjct: 134 RIGHRFADPSLLSTAFTHVSALKSSKKRGDSYQRLEFLGDHVLGLIVSDMLYRAFPSADE 193

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELS R   LV  E+C+ VA+ L L   I++ +           S+  DV E++I A++L
Sbjct: 194 GELSKRLADLVRKESCADVAKSLGLLDDIKLGAVGAGAGARLRKSVLGDVCEAVIGAIFL 253

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           DGG   A  FV++ W +R  K  +  RD KT LQEWA  K   TP Y+   R+GP HDP+
Sbjct: 254 DGGYTAAAGFVERNWTERMRKPRRPLRDPKTVLQEWAQGKGLPTPVYREVERTGPHHDPQ 313

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           F V V++ GL PA+G+  SKRAAE+VAA+ +++REG+
Sbjct: 314 FRVAVDLPGLEPAEGVGGSKRAAEKVAASVMIEREGV 350


>gi|115525028|ref|YP_781939.1| ribonuclease III [Rhodopseudomonas palustris BisA53]
 gi|115518975|gb|ABJ06959.1| RNAse III [Rhodopseudomonas palustris BisA53]
          Length = 268

 Score =  193 bits (491), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 101/217 (46%), Positives = 133/217 (61%), Gaps = 3/217 (1%)

Query: 12  RIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           RIG+ F +  LL  A TH S    SHS  +SY+R+EFLGD +LGL++S +L+  F  A E
Sbjct: 49  RIGHDFKDAGLLATAFTHVSALKSSHSRADSYQRMEFLGDHVLGLVVSDMLYRAFPKADE 108

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELS R   LV  ETC+ VA  L L   I++ +           S+  D+ E++I A+YL
Sbjct: 109 GELSKRLADLVRKETCADVALALGLLDGIKLGTVGAGAGARLRKSVLGDICEAVIGAVYL 168

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           DGG   A  FV+  W +R  K  +  RD KT LQEWA  K   TP Y+   R+GPDHDP+
Sbjct: 169 DGGYPAAAKFVEANWTERMRKPTRSLRDPKTVLQEWAQGKGLPTPAYREVERTGPDHDPK 228

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           F V VE+ GL PA+G+  SKRAAE+ AA+ +L REG+
Sbjct: 229 FRVRVELPGLEPAEGIGGSKRAAEKEAASAMLAREGV 265


>gi|148256032|ref|YP_001240617.1| ribonuclease III [Bradyrhizobium sp. BTAi1]
 gi|146408205|gb|ABQ36711.1| RNAse III [Bradyrhizobium sp. BTAi1]
          Length = 368

 Score =  190 bits (483), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 99/217 (45%), Positives = 137/217 (63%), Gaps = 3/217 (1%)

Query: 12  RIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           RIG+ FA+ SLL  A+TH S    S    +SY+RLEFLGD +LGL++S +L+  F SA E
Sbjct: 145 RIGHHFADPSLLSTAVTHVSALKSSKKRGDSYQRLEFLGDHVLGLIVSDMLYRSFPSADE 204

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELS R   LV  E+C+ VA+ L L   I++ +           S+  DV E++I A++L
Sbjct: 205 GELSKRLADLVRKESCADVAKSLGLLDDIKLGAVGAGAGARLRKSVLGDVCEAVIGAIFL 264

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           DGG   A  FV++ W +R  K  +  RD KT LQEWA  K   TP Y+   R+GP HDP+
Sbjct: 265 DGGYAAAAGFVERNWTERMHKPRRPLRDPKTVLQEWAQGKGLPTPVYREVERTGPHHDPQ 324

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           F V V++ GL  A+G+  SKRAAE+VAA+ +++REG+
Sbjct: 325 FRVAVDLPGLESAEGVGGSKRAAEKVAASVMIEREGV 361


>gi|3176883|gb|AAD02939.1| RNase III [Bradyrhizobium japonicum]
          Length = 231

 Score =  189 bits (479), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 98/225 (43%), Positives = 142/225 (63%), Gaps = 3/225 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLF 60
           +R   L +  G+ FA+ +LL + +TH S   S +   +SY+RLEFLGD +LGL++S +L+
Sbjct: 1   MRTRRLRRASGHTFADPNLLMQGITHVSALKSGRKRGDSYQRLEFLGDHVLGLVVSDMLY 60

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F +A EGELS R   LV  E+C+ VA+ L L   I++ S           S+  D+ E
Sbjct: 61  HAFPNADEGELSKRLAELVRKESCADVAKSLGLLDDIKLGSVGPSADARLRKSVLGDICE 120

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           ++I A++LDGG   A  FV + W +R  K  +  RD KT LQEWA  K   TP Y+   R
Sbjct: 121 AVIGAIFLDGGHAAAAEFVKRNWTERMHKPRRPLRDPKTVLQEWAQGKGLPTPVYREVER 180

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           +GP HDP+F V V++ GLAPA+G+  SKRAAE+VAA+ +++REG+
Sbjct: 181 TGPHHDPQFRVAVDLPGLAPAEGIGGSKRAAEKVAASVMIEREGV 225


>gi|296444865|ref|ZP_06886827.1| ribonuclease III [Methylosinus trichosporium OB3b]
 gi|296257533|gb|EFH04598.1| ribonuclease III [Methylosinus trichosporium OB3b]
          Length = 233

 Score =  187 bits (475), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 102/217 (47%), Positives = 132/217 (60%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE  +G+ F NR LLE ALTH S S +  ESYERLEFLGDR+LG++++ LL+  F +  E
Sbjct: 12  LEASVGHGFVNRGLLEHALTHVSGSTARTESYERLEFLGDRVLGVVVAHLLYETFPAESE 71

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELS R   LV  E+C++VA    +  F+R+     +       +I  D+ E++I A+YL
Sbjct: 72  GELSRRLADLVRKESCAEVAERWGVGPFMRLGDGEAQTGGRKKRAILGDMCEAIIGAVYL 131

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           DGG   A   V + +  R    G+  RDAKT LQEWA A+   TP Y++T RSGPDH P 
Sbjct: 132 DGGAAAAEAVVREAFGARMQTQGRRLRDAKTSLQEWAQARRLPTPCYRMTSRSGPDHAPF 191

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           F V V + G  PA+G   SKR AEQ AA   L REGI
Sbjct: 192 FKVEVVVEGFVPAEGGGASKRVAEQSAAQAFLDREGI 228


>gi|154247804|ref|YP_001418762.1| ribonuclease III [Xanthobacter autotrophicus Py2]
 gi|154161889|gb|ABS69105.1| Ribonuclease III [Xanthobacter autotrophicus Py2]
          Length = 236

 Score =  182 bits (462), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 100/223 (44%), Positives = 140/223 (62%), Gaps = 3/223 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHF 63
           +++E+RIGY F +RS+LE AL+H S          SY+R+EFLGD +LG ++S +L+  F
Sbjct: 9   ASVEERIGYRFRDRSILELALSHISAVKGEAPRLRSYQRMEFLGDHVLGSVVSHMLYLAF 68

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
              +EGELS R   LV  E C++VA+++DL  FIR+     +       +I ADV E ++
Sbjct: 69  PEGEEGELSRRLAELVREEACAEVAQDMDLGPFIRLGPGESQSGAHKRRAILADVAEGVV 128

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           AA++LDGG E A   V+++W+ R     +  RDAKT LQEWA A+    P Y+   RSGP
Sbjct: 129 AAVFLDGGYEAAHQVVERFWRPRLETPRRPLRDAKTVLQEWAQARGLPPPSYREVTRSGP 188

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           DH PRFTV V++ GLA  Q    SK+ A++ AAA  L REG+W
Sbjct: 189 DHAPRFTVAVDLPGLASEQADGASKQNAQKAAAAAFLVREGVW 231


>gi|182679393|ref|YP_001833539.1| ribonuclease III [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182635276|gb|ACB96050.1| Ribonuclease III [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 235

 Score =  181 bits (458), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 100/218 (45%), Positives = 135/218 (61%), Gaps = 2/218 (0%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           LE RIG+ F    LL  ALTH S++  + +E+Y+RLEFLGDR+LGL+I+ +L+  F  A+
Sbjct: 11  LETRIGHRFVEADLLTTALTHVSVTVGARRETYQRLEFLGDRVLGLVIAEMLYATFPEAE 70

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EGELS R   LV  E+C++VA E  +  F+R+    R+ + +   +I  DV ES+I A++
Sbjct: 71  EGELSRRLADLVRKESCAEVALEWGVGPFVRLGESERQ-IGTTKKAILGDVCESIIGAVF 129

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           LD G  VA   + K +  R     +  RDAKT LQEWA ++   TP Y+   R GPDH P
Sbjct: 130 LDAGYTVAQQVIVKAFDARMRSPRRPLRDAKTVLQEWAQSRGHPTPLYREICRCGPDHAP 189

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            FT+ V I G A AQ    SKR AEQ AAA  ++REGI
Sbjct: 190 EFTISVCIPGYADAQAKGPSKRLAEQAAAAHFIEREGI 227


>gi|304321233|ref|YP_003854876.1| ribonuclease III [Parvularcula bermudensis HTCC2503]
 gi|303300135|gb|ADM09734.1| ribonuclease III [Parvularcula bermudensis HTCC2503]
          Length = 238

 Score =  180 bits (456), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 95/213 (44%), Positives = 126/213 (59%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           G+ F +RSLL +ALTH+S+S    +  ERLEFLGDR+LGLL + LL+  F    EGEL+ 
Sbjct: 22  GHRFDDRSLLARALTHASVSQDGLKDLERLEFLGDRVLGLLAADLLWRRFPDMAEGELAP 81

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           R N+LV  ETC+  AR   L   +R+S+   +       +I  D  ESL+ A+Y+DGG+ 
Sbjct: 82  RLNALVRRETCADAARHWKLGEAVRMSAGEERTGGRNKDAILGDACESLLGAIYIDGGLG 141

Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
            A T  + YW  R  +      DAKT LQEWA  K   TP Y+   R GPDH P FTV V
Sbjct: 142 AAKTAFETYWTPRVEELIDDHADAKTALQEWAQEKGLGTPSYRDIDRDGPDHAPIFTVAV 201

Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
            + GL  A+    +KR+A+  AA  +L REG+W
Sbjct: 202 VVQGLESAEARGPNKRSAQMQAARSILVREGVW 234


>gi|300023749|ref|YP_003756360.1| ribonuclease III [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525570|gb|ADJ24039.1| ribonuclease III [Hyphomicrobium denitrificans ATCC 51888]
          Length = 235

 Score =  180 bits (456), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 95/222 (42%), Positives = 134/222 (60%), Gaps = 2/222 (0%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLISTLLFNH 62
           ++  LE ++G+ F +  LLE+ALTH+S+       +  ERLEF+GDR+LGL I+ +L   
Sbjct: 6   KFKELETKLGHRFKDPGLLERALTHASVRGGKIARFDNERLEFIGDRVLGLAIAEILNQQ 65

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +  A EGEL+ R+N LV  E C++VAR + L + + +S           T+I AD  E+L
Sbjct: 66  YPEASEGELARRYNRLVRGEACAKVARNIGLGAHLILSESEADSGGRDKTTILADAAEAL 125

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           + A+++D G E A   V K W++++    +   DAK+ LQEWA  +    P+Y V  R G
Sbjct: 126 LGAVFIDVGFEKARAVVRKLWQEQSEPVPEVAVDAKSALQEWAQGQGLALPKYTVVSRKG 185

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           PDH PRFT  V I+G APAQG   SKR AEQ AA  +L REG
Sbjct: 186 PDHAPRFTAEVIIAGRAPAQGEGASKRIAEQAAATALLTREG 227


>gi|85716284|ref|ZP_01047258.1| ribonuclease III [Nitrobacter sp. Nb-311A]
 gi|85696956|gb|EAQ34840.1| ribonuclease III [Nitrobacter sp. Nb-311A]
          Length = 266

 Score =  179 bits (453), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 102/222 (45%), Positives = 138/222 (62%), Gaps = 3/222 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           + +E+R+G+ FA+ SLL  A TH S    S    +SY+RLEFLGD +LGL+IS +L+  F
Sbjct: 44  AAIEQRLGHKFADISLLTTAFTHVSALKSSRGRSDSYQRLEFLGDHVLGLVISDMLYRAF 103

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EGELS R   LV  ETC  VAR LDL   +++ +           S+  D+ E++I
Sbjct: 104 PQADEGELSKRLADLVRKETCIDVARSLDLQEGVKLGAVGAGAGARLRRSVLGDICEAVI 163

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            A+YLDGG  VA  FV++ W +R  K  +  RD KT LQEWA  K   TP Y+   R+GP
Sbjct: 164 GAVYLDGGYAVAAAFVERNWLERMRKPVRPLRDPKTVLQEWAQGKGLPTPVYREVERTGP 223

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            HDPRF V VE+ GL  ++G+  SKRAAE+ AA+ ++ REG+
Sbjct: 224 HHDPRFRVAVELPGLEVSEGIGGSKRAAEKAAASAMIAREGV 265


>gi|217977175|ref|YP_002361322.1| Ribonuclease III [Methylocella silvestris BL2]
 gi|254807894|sp|B8EK13|RNC_METSB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|217502551|gb|ACK49960.1| Ribonuclease III [Methylocella silvestris BL2]
          Length = 235

 Score =  178 bits (451), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 97/219 (44%), Positives = 135/219 (61%), Gaps = 1/219 (0%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S LE RIG+ F+   L+E ALTH S +   + SY+RLEFLGDR+LG++++ +L+  F  A
Sbjct: 8   SALEARIGHRFSAADLIEAALTHVSAAQGKRVSYQRLEFLGDRVLGVVVANMLYGAFPDA 67

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS R   LV  E+C++VA E  + +++RV    +++  S   +I  DV ES+I A+
Sbjct: 68  DEGELSRRLADLVRKESCAEVALEWGVEAYVRVGESEKQN-ASVNRAILGDVCESIIGAV 126

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           +LDGG   A   V + ++ R     +  RD KT LQEWA A+    P Y+ T R+GPDH 
Sbjct: 127 FLDGGFAPAQRVVTQAFEPRMRSPRRPLRDPKTTLQEWAQARGLPPPSYRETARTGPDHA 186

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           P FT+ VEI+G   A+    +KR AEQ AAA  L RE I
Sbjct: 187 PEFTISVEIAGFQQAEARGFAKRLAEQAAAAAFLTREKI 225


>gi|323137544|ref|ZP_08072621.1| ribonuclease III [Methylocystis sp. ATCC 49242]
 gi|322397170|gb|EFX99694.1| ribonuclease III [Methylocystis sp. ATCC 49242]
          Length = 234

 Score =  176 bits (445), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 98/219 (44%), Positives = 135/219 (61%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + LE+ +G+ FA++SLL  ALTH S S    ESYERLEFLGDR+LGL ++ +L+  F   
Sbjct: 9   AALEESVGHRFADQSLLRWALTHVSASSQRPESYERLEFLGDRVLGLAVAHMLYEAFPGE 68

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS R  +LV  ETC++VA    +  ++R+     +       +I  DV E++I A+
Sbjct: 69  SEGELSRRLAALVRKETCAEVAEIWGVGPYMRLGEGEAQTGGRKKRAILGDVCEAIIGAV 128

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           +LDGG + AG  V   +  + L++G+  RDAKT LQEWA A+    P Y++  RSGPDH 
Sbjct: 129 FLDGGADAAGRVVRAGFGPKMLEAGRDLRDAKTALQEWAQARRLPPPRYRLIARSGPDHA 188

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           P F + V+I G   A G   SKR AEQ AAA  + REG+
Sbjct: 189 PSFEMAVDIEGFESAGGAGASKRVAEQAAAAAFMAREGV 227


>gi|92117774|ref|YP_577503.1| ribonuclease III [Nitrobacter hamburgensis X14]
 gi|91800668|gb|ABE63043.1| RNAse III [Nitrobacter hamburgensis X14]
          Length = 266

 Score =  175 bits (444), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 99/222 (44%), Positives = 137/222 (61%), Gaps = 3/222 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           + +E+R+G+ FA+ SLL  A TH S    S    +SY+RLEFLGD +LGL++S +L+  F
Sbjct: 44  AAIEQRLGHKFADMSLLTTAFTHVSALKSSRGRSDSYQRLEFLGDHVLGLVVSDMLYRAF 103

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EGELS R   LV  ETC  VA+ LDL   I++ +           S+  D+ E++I
Sbjct: 104 PKADEGELSKRLAELVRKETCIDVAKSLDLQDGIKLGAVGAGAGARLRRSVLGDICEAVI 163

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            A+YLDGG   A  FV++ W +R  K  +  RD KT LQEWA  +   TP Y+   R+GP
Sbjct: 164 GAVYLDGGYAAAAAFVERNWLERMRKPVRPLRDPKTVLQEWAQGQGLPTPVYREVERTGP 223

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            HDPRF V VE+ GL  ++G+  SKRAAE+ AA+ ++ REG+
Sbjct: 224 HHDPRFRVAVELPGLEASEGIGGSKRAAEKAAASAMIAREGV 265


>gi|319784504|ref|YP_004143980.1| ribonuclease III [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317170392|gb|ADV13930.1| ribonuclease III [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 251

 Score =  175 bits (444), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 97/218 (44%), Positives = 136/218 (62%), Gaps = 1/218 (0%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           ++ + GY F +  LLE ALTHSS   +   + +RLEFLGDR+LGL+++ +LF  F  A E
Sbjct: 15  VKAKTGYVFKDIRLLETALTHSSAVKAATNN-QRLEFLGDRVLGLVVADMLFEKFPDAPE 73

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GE++ RFN+LV A TCS++  E+ L   +R  S L+        +  AD VE+LIAA+Y+
Sbjct: 74  GEIAPRFNALVDARTCSEIGIEMQLEDLVRADSALKMRSRGSGGNYLADAVEALIAAVYV 133

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           DGGIE A  FV +YW+ R+        + K++LQEW      + PEY +  R GPDH P 
Sbjct: 134 DGGIEAARRFVLRYWEPRSHTVIAKPLNPKSDLQEWIAKTSDIRPEYVIDKREGPDHQPV 193

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           FTV +++ G AP  G   S+RAAE+ AA+  L REG+W
Sbjct: 194 FTVSLQVRGFAPISGTGGSRRAAEEAAASAFLVREGVW 231


>gi|163744855|ref|ZP_02152215.1| ribonuclease III [Oceanibulbus indolifex HEL-45]
 gi|161381673|gb|EDQ06082.1| ribonuclease III [Oceanibulbus indolifex HEL-45]
          Length = 228

 Score =  175 bits (444), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 96/216 (44%), Positives = 133/216 (61%), Gaps = 6/216 (2%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           E RIG++FA   LL +A+TH+S+S + ++  +RLEFLGDR+LGL+++  L      A EG
Sbjct: 11  EARIGHSFAKPELLVRAVTHASMSSANRDDNQRLEFLGDRVLGLVMAEALLALDPGATEG 70

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA---DVVESLIAAL 126
           +L+ RFN+LV  ETC+ VARE+DL   +++    R ++ S     QA   D +E++IAA+
Sbjct: 71  QLAPRFNALVRKETCADVAREIDLGKVLKLG---RSEMISGGRRKQALLGDAIEAVIAAV 127

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           YLD G E A   V + W  R     +  RDAKT LQEWA A+  + P Y  T RSGPDH 
Sbjct: 128 YLDSGFEAAKGLVLRLWGDRLKTVKEDARDAKTALQEWAQARGLMPPRYVQTDRSGPDHA 187

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           P FT+   +   A A     SKRAAEQ AA  +L++
Sbjct: 188 PVFTITARLDNGAEAAATAPSKRAAEQAAATTLLRQ 223


>gi|83855027|ref|ZP_00948557.1| Ribonuclease III [Sulfitobacter sp. NAS-14.1]
 gi|83941550|ref|ZP_00954012.1| Ribonuclease III [Sulfitobacter sp. EE-36]
 gi|83842870|gb|EAP82037.1| Ribonuclease III [Sulfitobacter sp. NAS-14.1]
 gi|83847370|gb|EAP85245.1| Ribonuclease III [Sulfitobacter sp. EE-36]
          Length = 228

 Score =  175 bits (444), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 93/214 (43%), Positives = 132/214 (61%), Gaps = 6/214 (2%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           E RIGY FA   LL +A+TH+S+S + ++  +RLEFLGDR+LGL+++  L     +A EG
Sbjct: 11  EGRIGYHFAKPELLNRAVTHASMSSANRDDNQRLEFLGDRVLGLVMAEALLKLDPAATEG 70

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA---DVVESLIAAL 126
           +L+ RFN+LV  E C++VARE+D+ + +++    R ++ S     QA   D +E++IAA+
Sbjct: 71  QLAPRFNALVRKEACAEVAREIDMGAVLKLG---RSEMLSGGRRKQALLGDAIEAIIAAV 127

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           YLDGG + A   + + W  R ++  +  RDAKT LQEWA A+    P Y  T R GPDH 
Sbjct: 128 YLDGGFDEAKALILRLWGDRVMQVKQDARDAKTALQEWAQARGLPPPAYVQTDRQGPDHA 187

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           P FT+   I   A A     SKR AEQ AA  +L
Sbjct: 188 PVFTITARIENGASAVASAPSKRQAEQAAAKTLL 221


>gi|83858196|ref|ZP_00951718.1| ribonuclease III [Oceanicaulis alexandrii HTCC2633]
 gi|83853019|gb|EAP90871.1| ribonuclease III [Oceanicaulis alexandrii HTCC2633]
          Length = 228

 Score =  175 bits (443), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 95/221 (42%), Positives = 133/221 (60%), Gaps = 2/221 (0%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           R    E RI Y F +R LLE+ALTH+S     S   S ERLEFLGDR+LGL+ S  L+  
Sbjct: 4   RIKDFEARINYRFKDRELLERALTHASHGDGRSRAASNERLEFLGDRVLGLMASQRLYET 63

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F + +EG L+ R N++V+   C++ AR  DL   +R+S+   +       SI AD  E++
Sbjct: 64  FPNLEEGGLAQRLNAVVNKSACARAARRCDLGEGLRLSAAEERLGGREKESIIADACEAV 123

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           I ALYLDGG++ A  F   +W     +  +  +DAK++LQEWA  K    P Y+   R G
Sbjct: 124 IGALYLDGGLDAAWAFFTTFWADEIDQLTRRPKDAKSQLQEWAAQKGYGVPVYETVARKG 183

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           PDH P F + V + G+APA+G   SK+ A++ AA+E+LKRE
Sbjct: 184 PDHRPVFEIEVRLDGVAPARGEGGSKQDAQRAAASEMLKRE 224


>gi|154253314|ref|YP_001414138.1| ribonuclease III [Parvibaculum lavamentivorans DS-1]
 gi|154157264|gb|ABS64481.1| Ribonuclease III [Parvibaculum lavamentivorans DS-1]
          Length = 226

 Score =  175 bits (443), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 92/220 (41%), Positives = 129/220 (58%), Gaps = 3/220 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L+ R+ + F +  LL +ALTH S   +   +Y+R EFLGDR+LGL+I+  L   F  A
Sbjct: 6   AALQVRLAHDFKDLGLLSRALTHPSADGA---NYQRFEFLGDRVLGLVIADWLLRDFPQA 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGEL++R+N+LV  E C++VA  + L + I + +   K       +I AD  E++IAAL
Sbjct: 63  DEGELAIRYNALVRKEACAEVAERIGLGACITMGAGEEKAGGRRKPAILADACEAVIAAL 122

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           Y DGG++ A  F++  W     KS +  +DAKT LQEWA A+    P Y +  RSGPDH 
Sbjct: 123 YTDGGLQAARRFIETEWAYLVEKSSEIPQDAKTALQEWAQARGQGVPTYTLVGRSGPDHA 182

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           P FTV V      P +    SKR AEQ AA  +L+  G+W
Sbjct: 183 PEFTVEVSAGKAKPLRAQGNSKRQAEQTAARALLEALGVW 222


>gi|75676109|ref|YP_318530.1| ribonuclease III [Nitrobacter winogradskyi Nb-255]
 gi|90101631|sp|Q3SRB3|RNC_NITWN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|74420979|gb|ABA05178.1| RNAse III [Nitrobacter winogradskyi Nb-255]
          Length = 266

 Score =  174 bits (442), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 99/222 (44%), Positives = 138/222 (62%), Gaps = 3/222 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHF 63
           + +E+R+G+ FA+ SLL  A TH S   S +   +SY+RLEFLGD +LGL++S +L+  F
Sbjct: 44  AAIEQRLGHTFADISLLTTAFTHVSALKSSRGRCDSYQRLEFLGDHVLGLVVSDMLYRAF 103

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EGELS R   LV  ETC  VA+ LDL   +++ +           S+  D+ E++I
Sbjct: 104 PKADEGELSKRLADLVRKETCIDVAKSLDLQEGVKLGAVGAGAGARLRRSVLGDICEAVI 163

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            A+YLDGG   A  FV++ W +R  K  +  RD KT LQEWA  K   TP Y+   R+GP
Sbjct: 164 GAVYLDGGYAAAAAFVERNWLERMRKPVRPLRDPKTVLQEWAQGKGLPTPVYREVERTGP 223

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            HDPRF V VE+ GL  ++G+  SKRAAE+ AA+ ++ REG+
Sbjct: 224 HHDPRFRVAVELPGLESSEGIGGSKRAAEKAAASAMIVREGV 265


>gi|170749855|ref|YP_001756115.1| ribonuclease III [Methylobacterium radiotolerans JCM 2831]
 gi|170656377|gb|ACB25432.1| Ribonuclease III [Methylobacterium radiotolerans JCM 2831]
          Length = 259

 Score =  174 bits (441), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 90/219 (41%), Positives = 131/219 (59%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + LE+RIG++F ++ LL +ALTH+S +     SY+RLEFLGDR+LGL ++  L+  F  A
Sbjct: 29  TALEERIGHSFGDQDLLTRALTHTSKASGRGGSYQRLEFLGDRVLGLAVADRLYGAFPEA 88

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+LS R  +LV  ETC+ VA   ++   + +             +I ADV E+++ A+
Sbjct: 89  DEGDLSRRLAALVRRETCAAVAASWEVGPHLILGQGEVMGGGRRNQTILADVCEAILGAI 148

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           YLD G + A   V+ +++     +    RDAK+ LQEWA  +    P Y V  R+GPDH 
Sbjct: 149 YLDAGFDAARAVVETHFRPGEPTAAARGRDAKSALQEWAMGRSLPIPTYAVVERTGPDHA 208

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           PRF + V++ GL P  G   SKR AEQ AA  +++REGI
Sbjct: 209 PRFRIAVQVEGLEPGLGDGTSKRIAEQAAARALMEREGI 247


>gi|254463926|ref|ZP_05077337.1| ribonuclease III [Rhodobacterales bacterium Y4I]
 gi|206684834|gb|EDZ45316.1| ribonuclease III [Rhodobacterales bacterium Y4I]
          Length = 225

 Score =  174 bits (440), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 93/218 (42%), Positives = 134/218 (61%), Gaps = 6/218 (2%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           E+RIG+ FA   LL++A+TH+S+S S ++  +RLEFLGDR+LGL+++T L  H  +A EG
Sbjct: 11  EERIGHKFARPELLQRAVTHASVSSSNRKDNQRLEFLGDRVLGLVMATALLEHDKTATEG 70

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA---DVVESLIAAL 126
           +L+ RFN+LV  E C+ VA+E+DL + +++    R ++ S     QA   D +E++IAA+
Sbjct: 71  QLAPRFNALVRKEACADVAKEIDLGAVLKLG---RSEMMSGGRRKQALLGDAMEAVIAAV 127

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           Y D G + A   + + W  R  +     RDAKT LQEWA A+    P Y    RSGPDH 
Sbjct: 128 YKDAGFDAAAEMILRLWGTRIHQVETDARDAKTSLQEWAQARGQQVPIYVEVSRSGPDHA 187

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           P FT+   +     AQ    SKR AEQ AA  +L++ G
Sbjct: 188 PVFTIAARLQDGTEAQATAGSKRQAEQAAAKALLEQLG 225


>gi|299135102|ref|ZP_07028293.1| ribonuclease III [Afipia sp. 1NLS2]
 gi|298590079|gb|EFI50283.1| ribonuclease III [Afipia sp. 1NLS2]
          Length = 282

 Score =  174 bits (440), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 100/220 (45%), Positives = 136/220 (61%), Gaps = 3/220 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           +E+RIG+ F N +LL+ ALTH S    S S  +SY+RLEFLGD +LGL++S +L+  F  
Sbjct: 57  IEQRIGHTFKNPALLKTALTHVSALKSSQSRTDSYQRLEFLGDHVLGLIVSDMLYGAFPK 116

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A EGE+S R   LV  E C  VA+ L L   I++ +           SI  D+ E++I A
Sbjct: 117 ADEGEMSKRLADLVRKEACVDVAKSLGLHENIKLGTVGAGVGARLRNSIVGDICEAVIGA 176

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           ++LDGG   A  FV + W +R  +  +  RD KT LQEWA  K   TP Y+   R+GP H
Sbjct: 177 IFLDGGYGAAEQFVLRNWTERMRRPVRPLRDPKTVLQEWAQGKGLPTPVYREVERTGPHH 236

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           DPRF V V++ GLA A+G+  SKRAAE+ AA+ +L REG+
Sbjct: 237 DPRFRVAVDLPGLASAEGIGSSKRAAEKAAASALLSREGV 276


>gi|209884975|ref|YP_002288832.1| ribonuclease III [Oligotropha carboxidovorans OM5]
 gi|209873171|gb|ACI92967.1| ribonuclease III [Oligotropha carboxidovorans OM5]
          Length = 288

 Score =  173 bits (439), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 99/220 (45%), Positives = 136/220 (61%), Gaps = 3/220 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           +E+RIG+ F N +LL+ ALTH S    S +  +SY+RLEFLGD +LGL++S +L+  F  
Sbjct: 63  IEQRIGHTFKNPNLLKTALTHVSALKPSQNRTDSYQRLEFLGDHVLGLIVSDMLYGAFPK 122

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A EGE+S R   LV  E C  VA+ L L   I++ +           SI  D+ E++I A
Sbjct: 123 ADEGEMSKRLADLVRKEACVDVAKSLGLHENIKLGTVGAGVGARLRNSIVGDICEAVIGA 182

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           ++LDGG + A  FV   W +R  +  +  RD KT LQEWA  K   TP Y+   R+GP H
Sbjct: 183 IFLDGGYDAAEQFVLSNWTERMRRPVRPLRDPKTILQEWAQGKGLPTPVYREVERTGPHH 242

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           DPRF V V++ GLA A+G+  SKRAAE+ AA+ +L REG+
Sbjct: 243 DPRFRVAVDLPGLASAEGIGSSKRAAEKAAASALLNREGV 282


>gi|56698030|ref|YP_168401.1| ribonuclease III [Ruegeria pomeroyi DSS-3]
 gi|81349082|sp|Q5LNK5|RNC_SILPO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|56679767|gb|AAV96433.1| ribonuclease III [Ruegeria pomeroyi DSS-3]
          Length = 225

 Score =  173 bits (439), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 90/211 (42%), Positives = 129/211 (61%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           E R+GY+F    LL +ALTH SIS S ++  +RLEFLGDR+LGL+++T L      A EG
Sbjct: 11  EARLGYSFERPELLVRALTHGSISSSTRQDNQRLEFLGDRVLGLVMATALLEADKDATEG 70

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           +L+ RFN+LV  ETC++VARE DL + +++             ++  D +E++IAA+Y D
Sbjct: 71  QLAPRFNALVRKETCAEVAREADLGAVLKLGRSEMMSGGRRKLALLGDAMEAVIAAVYRD 130

Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
           GG   A   + + W  R  +     RDAKT LQEWA A+    P Y++  RSGPDH P F
Sbjct: 131 GGFAAAEAVILRLWGARVHQVEADARDAKTALQEWAQARGQTPPRYELVKRSGPDHAPVF 190

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           T++ E++    A+    +KR AEQ AA ++L
Sbjct: 191 TILAELADGRRAEATAGAKRQAEQAAARKLL 221


>gi|170744647|ref|YP_001773302.1| ribonuclease III [Methylobacterium sp. 4-46]
 gi|168198921|gb|ACA20868.1| Ribonuclease III [Methylobacterium sp. 4-46]
          Length = 244

 Score =  172 bits (437), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 91/220 (41%), Positives = 132/220 (60%), Gaps = 1/220 (0%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S LE RIG+AF ++ LL +ALTH S + + +ESY+RLEFLGDR+LGL ++  L      A
Sbjct: 17  SALEGRIGHAFDDKDLLARALTHVS-AGAGEESYQRLEFLGDRVLGLAVAEGLLRALPGA 75

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+LS R + LV  E+C+ VA+  ++   +R+ +           +I ADV E+++ A+
Sbjct: 76  DEGDLSRRLSGLVRRESCAAVAQAWEVGPHLRLGAGEVHGGGRRNPAILADVCEAILGAI 135

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           +LD G   A   +D+ +       G   RD K+ LQEWA      TP Y V  R+GPDH 
Sbjct: 136 FLDAGYAAAKAVIDRAFAAAEEAEGPRGRDPKSALQEWAQGLGLPTPTYAVVERAGPDHA 195

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           P F +   ++G+AP+ G+  SKR AEQ AA  +L+REG+W
Sbjct: 196 PIFRIEARVAGVAPSLGVGGSKRLAEQEAARLLLRREGVW 235


>gi|260425711|ref|ZP_05779691.1| ribonuclease III [Citreicella sp. SE45]
 gi|260423651|gb|EEX16901.1| ribonuclease III [Citreicella sp. SE45]
          Length = 227

 Score =  172 bits (436), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 90/216 (41%), Positives = 130/216 (60%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + LE+R+G+ FA+   L +ALTHSS+S   +E  +RLEFLGDR+LGL+++  L +    A
Sbjct: 8   AALEQRLGHRFADPERLRRALTHSSMSAPGREDNQRLEFLGDRVLGLVMAEALLSEDRGA 67

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+L+ RFN+LV  E C++VARE+DL + +++             ++  D +E++IAA+
Sbjct: 68  SEGQLAPRFNALVRKEACAEVAREIDLGAALKLGRSEMMSGGRRKMALLGDAMEAVIAAV 127

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           YLD G   A   V + W  R  +  +  RDAKT LQEWA A+  V P Y    R GPDH 
Sbjct: 128 YLDAGFGTAKALVLRLWGDRIARVEEDARDAKTSLQEWAQARGMVPPSYTEVAREGPDHA 187

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           P FT+   +   A A+    SKR AEQ AA+ +L +
Sbjct: 188 PVFTIEARLENGAAARATAGSKRKAEQQAASGLLDK 223


>gi|83951643|ref|ZP_00960375.1| ribonuclease III [Roseovarius nubinhibens ISM]
 gi|83836649|gb|EAP75946.1| ribonuclease III [Roseovarius nubinhibens ISM]
          Length = 227

 Score =  171 bits (433), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 95/212 (44%), Positives = 127/212 (59%), Gaps = 6/212 (2%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71
           R+G+ F   +LL +ALTHSS+S   ++  +RLEFLGDR+LGL++S  L  H   A EG L
Sbjct: 13  RLGHEFQTPALLVQALTHSSMSTPNRDDNQRLEFLGDRVLGLVMSEALLEHDRKAAEGTL 72

Query: 72  SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA---DVVESLIAALYL 128
           + RFN+LV  ETC+ VAR++DL + +++    R ++ S     QA   D +E++IAA+YL
Sbjct: 73  APRFNALVRKETCADVARQIDLGAVLKLG---RSEMLSGGRRKQALLGDAMEAVIAAVYL 129

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           D G E A T V   W  R  +     RDAKT LQEWA A+    P Y+   RSGPDH P 
Sbjct: 130 DAGFETARTVVLALWGDRITRVEADARDAKTALQEWAQARGLAPPRYEEVARSGPDHAPE 189

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           FT+V  +     A     SKR AEQ AA  +L
Sbjct: 190 FTIVARLETGEEAASKAGSKRQAEQAAAKALL 221


>gi|298291621|ref|YP_003693560.1| ribonuclease III [Starkeya novella DSM 506]
 gi|296928132|gb|ADH88941.1| ribonuclease III [Starkeya novella DSM 506]
          Length = 243

 Score =  170 bits (431), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 86/195 (44%), Positives = 121/195 (62%), Gaps = 6/195 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTH-SSI-----SHSYQESYERLEFLGDRILGLLISTLLFNH 62
           LE  +G+ FA+R+ L  ALTH SS+     S +   SY+RLEFLGD +LGL++S +L+  
Sbjct: 21  LEAALGHRFASRAHLRLALTHISSVTGAQGSQARVRSYQRLEFLGDHVLGLVVSDMLYRA 80

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           + +A+EGELS R   LV  E C++VAR +DL  +IR+     +       +I ADV E++
Sbjct: 81  YPNAEEGELSRRLADLVCEEACAEVARAMDLGPYIRLGPGEDRTGGRERPAILADVAEAV 140

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +AA+YLD G E A   V+K+W+ R    G   RD KT LQEWA  +    P Y++  RSG
Sbjct: 141 LAAVYLDAGFEAAEAMVEKFWRPRLSTPGSSARDPKTALQEWAQGRGLPPPHYRLVERSG 200

Query: 183 PDHDPRFTVVVEISG 197
           PDH+P F + VE+ G
Sbjct: 201 PDHNPEFRIAVELPG 215


>gi|329850746|ref|ZP_08265591.1| ribonuclease III [Asticcacaulis biprosthecum C19]
 gi|328841061|gb|EGF90632.1| ribonuclease III [Asticcacaulis biprosthecum C19]
          Length = 236

 Score =  169 bits (429), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 92/219 (42%), Positives = 133/219 (60%), Gaps = 3/219 (1%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDS 65
           T++ R+GY F ++ LLE ALTH+S++   +     ERLEFLGDR+LGL+I+  L ++F  
Sbjct: 15  TVQDRLGYRFRDKQLLEVALTHASVAEGARRIADNERLEFLGDRVLGLMIAEALMDNFPE 74

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A+EGELS RF++LVS E C+ +AR+L L   +R+++   K       +I  D  E+L+AA
Sbjct: 75  AEEGELSRRFHALVSREACADIARQLSLGEAVRLAAGETKSGGRSNPTILGDACEALMAA 134

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           +Y+DGG +         W+Q  L SG   R + K+ LQEWA A     P Y +  R GPD
Sbjct: 135 VYVDGGYDAVVKSFAPLWQQLLLDSGNASRSNPKSFLQEWAVANAKRPPAYNLIERRGPD 194

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           H P FT+ V I GL P      S++ AE+ AA  +++RE
Sbjct: 195 HAPVFTMEVVIDGLQPQSATGKSRQEAEKTAALALIERE 233


>gi|294011699|ref|YP_003545159.1| ribonuclease III [Sphingobium japonicum UT26S]
 gi|292675029|dbj|BAI96547.1| ribonuclease III [Sphingobium japonicum UT26S]
          Length = 237

 Score =  168 bits (426), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 92/214 (42%), Positives = 127/214 (59%), Gaps = 3/214 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L+  IG+A  +R+   +ALTH S   ++  +YERLEFLGDRILGLLI+  +++ F    E
Sbjct: 24  LKALIGHAPKDRTAFHQALTHGS---AHAVNYERLEFLGDRILGLLIAEWVYDRFSGEPE 80

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS RFN+LVS ETC++VAR   + + + +    R D  +   ++  DV+E+LI ALYL
Sbjct: 81  GKLSRRFNALVSGETCAEVARGAGVPAHLILGKQARDDGAADSDNVLGDVMEALIGALYL 140

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           +GG+E A T V + W  R        +  K+ LQEWA A     PEY +T RSGP H  +
Sbjct: 141 EGGLEEARTLVRRLWADRVDTQASAPKHPKSALQEWAAANKRKPPEYAMTDRSGPHHALK 200

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           FTV V I G   A     SK+ AE  AA  +L +
Sbjct: 201 FTVTVSIKGAGEASATGGSKQEAETAAAKALLDK 234


>gi|254418789|ref|ZP_05032513.1| ribonuclease III [Brevundimonas sp. BAL3]
 gi|196184966|gb|EDX79942.1| ribonuclease III [Brevundimonas sp. BAL3]
          Length = 236

 Score =  168 bits (425), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 93/236 (39%), Positives = 140/236 (59%), Gaps = 12/236 (5%)

Query: 1   MSALR---YSTLEKRIGYAFANRSLLEKALTHSSIS-------HSYQESYERLEFLGDRI 50
           M+ LR    + L+ RIG+AF + +LLE+ALTH+S+        H  +++ ERLEFLGDR+
Sbjct: 1   MANLRAEAVAALQTRIGHAFRDAALLERALTHASVGEGAPVGVHGPRDN-ERLEFLGDRV 59

Query: 51  LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110
           LGLL++  L   + +A EG+LS   ++LV    C++V   L + + +R+S    K     
Sbjct: 60  LGLLVAEKLSRDYPTANEGQLSSSLHALVDKTACARVGEALGVGAALRLSPGETKTGGRR 119

Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKF 169
              + AD VE+++AA+YLDGG+E A  F DK W +  +    +   + K+ LQEWA AK 
Sbjct: 120 KAGVIADAVEAILAAVYLDGGLEAARAFFDKAWAEEFSAPPSRTVTNPKSALQEWAQAKG 179

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
              P Y+V  R+G DH P FT+ V + G+ P      S++ AE+ AA  +LKREG+
Sbjct: 180 RPLPTYRVADRTGSDHAPTFTIEVSVEGVEPLTAQGRSRQEAEKAAATALLKREGV 235


>gi|163738238|ref|ZP_02145654.1| 4'-phosphopantetheinyl transferase [Phaeobacter gallaeciensis
           BS107]
 gi|161388854|gb|EDQ13207.1| 4'-phosphopantetheinyl transferase [Phaeobacter gallaeciensis
           BS107]
          Length = 228

 Score =  168 bits (425), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 86/213 (40%), Positives = 130/213 (61%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           E RIGY+F+  +LL +ALTH+S+S   ++  +RLEFLGDR+LGL+++T L +   +A EG
Sbjct: 11  ETRIGYSFSQPALLVRALTHASVSSPNRQDNQRLEFLGDRVLGLVMATALLDTDKAATEG 70

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           +L+ RFN+LV  ETC+ VAR++DL + +++             ++  D +E++IAA+Y D
Sbjct: 71  QLAPRFNALVRKETCADVARDIDLGAVLKLGRSETMSGGRRKLALLGDAMEAVIAAVYKD 130

Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
           GG + A   + + W  R  +     RD KT LQE+A A+    P Y +  R+GPDH P F
Sbjct: 131 GGFDAAQELILRLWGNRIGRVEADARDPKTTLQEFAQARGEQPPAYVLVERTGPDHQPEF 190

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           T+ V++      +    SKR AEQ AA  +L R
Sbjct: 191 TISVQLQDGTEGRATAGSKRQAEQAAAKFLLAR 223


>gi|94497606|ref|ZP_01304175.1| ribonuclease III [Sphingomonas sp. SKA58]
 gi|94423023|gb|EAT08055.1| ribonuclease III [Sphingomonas sp. SKA58]
          Length = 227

 Score =  167 bits (424), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 93/214 (43%), Positives = 124/214 (57%), Gaps = 3/214 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L+  IG A  NR+  E+ALTH S   +   +YERLEFLGDRILGLLI   +F+ F    E
Sbjct: 14  LKDLIGRAPHNRATFEQALTHGS---AKPVNYERLEFLGDRILGLLIGEWVFDRFADEPE 70

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS R+N+LVS ETC+ +AR   +   + +    R D  +   ++  DV+E+LI ALYL
Sbjct: 71  GKLSRRYNALVSGETCADIARTAGVPKHLILGKQARDDGAADSDNVLGDVMEALIGALYL 130

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           +GG++ A   V + W  R        R  K+ LQEWA A     PEY++T RSGP H  R
Sbjct: 131 EGGLDEARALVRRLWGNRVDTQTSAPRHPKSALQEWAAANRRKPPEYQMTDRSGPQHALR 190

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           FTV V I G   A     SK+ AE  AA  +L++
Sbjct: 191 FTVAVSIKGAGEASATGASKQEAETAAAKALLEK 224


>gi|163740176|ref|ZP_02147570.1| ribonuclease III [Phaeobacter gallaeciensis 2.10]
 gi|161386034|gb|EDQ10409.1| ribonuclease III [Phaeobacter gallaeciensis 2.10]
          Length = 228

 Score =  167 bits (423), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 86/213 (40%), Positives = 129/213 (60%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           E RIGY+F+  +LL +ALTH+S+S   ++  +RLEFLGDR+LGL+++T L +   +A EG
Sbjct: 11  ETRIGYSFSQPALLVRALTHASVSSPNRQDNQRLEFLGDRVLGLVMATALLDTDKAATEG 70

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           +L+ RFN+LV  ETC+ VAR++DL + +++             ++  D +E++IAA+Y D
Sbjct: 71  QLAPRFNALVRKETCADVARDIDLGAVLKLGRSETMSGGRRKLALLGDAMEAVIAAVYKD 130

Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
           GG + A   + + W  R  +     RD KT LQE+A A+    P Y +  R GPDH P F
Sbjct: 131 GGFDAAQELILRLWGNRIGRVEADARDPKTTLQEFAQARGEQPPAYVLVERKGPDHQPEF 190

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           T+ V++      +    SKR AEQ AA  +L R
Sbjct: 191 TISVQLQDGTEGRATAGSKRQAEQAAAKFLLAR 223


>gi|148553136|ref|YP_001260718.1| RNAse III [Sphingomonas wittichii RW1]
 gi|148498326|gb|ABQ66580.1| RNAse III [Sphingomonas wittichii RW1]
          Length = 234

 Score =  167 bits (422), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 89/210 (42%), Positives = 123/210 (58%), Gaps = 3/210 (1%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           +G+   + +L E+ALTH S   ++   YERLEFLGDR+LGL+    LF  F    EG+LS
Sbjct: 26  LGHEPRDLALFERALTHGSYGPNH---YERLEFLGDRVLGLVAGAWLFELFPDEPEGKLS 82

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
            R N++VS ETC+ V R + +A+ +++    R D      ++  DVVE+LI ALYL+GG+
Sbjct: 83  RRLNAIVSRETCADVGRAIGVATHMKLGKQARDDGAVQSDNVLGDVVEALIGALYLEGGL 142

Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
           + A  FV + W  RA    +  +  K+ LQEWA A     P Y +  RSGP H PRFTV 
Sbjct: 143 DAAQAFVRRAWDDRATGQAQAPKHPKSALQEWAAAHRCKPPVYTMGNRSGPHHAPRFTVT 202

Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           V I G A A     SK+ AE  AA  +L++
Sbjct: 203 VAIPGRAEASAEGSSKQEAETAAAKALLEK 232


>gi|254474637|ref|ZP_05088023.1| ribonuclease III [Ruegeria sp. R11]
 gi|214028880|gb|EEB69715.1| ribonuclease III [Ruegeria sp. R11]
          Length = 222

 Score =  166 bits (421), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 87/213 (40%), Positives = 126/213 (59%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           E RIGY F   +LL +ALTH+S+S   ++  +RLEFLGDR+LGL+++T L      A EG
Sbjct: 5   EARIGYQFTEPALLVRALTHASVSSPNRKDNQRLEFLGDRVLGLVMATALLETDKDASEG 64

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           +L+ RFN+LV  ETC+ VAR++D+ S +++             ++  D +E++IAA+Y D
Sbjct: 65  QLAPRFNALVRKETCADVARQIDVGSVLKLGRSETLSGGRRKMALLGDAMEAVIAAVYKD 124

Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
           GG + A   + + W  R  +     RDAKT LQE+A A+    P Y +  R GPDH P F
Sbjct: 125 GGFDAAQELILRLWGDRIGRVEADARDAKTTLQEFAQARGEQPPTYVLVERKGPDHQPEF 184

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           T+ V++      +    SKR AEQ AA  +L R
Sbjct: 185 TISVQLQDGTEGRATAGSKRQAEQAAAKSLLAR 217


>gi|126733741|ref|ZP_01749488.1| ribonuclease III [Roseobacter sp. CCS2]
 gi|126716607|gb|EBA13471.1| ribonuclease III [Roseobacter sp. CCS2]
          Length = 226

 Score =  166 bits (421), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 85/216 (39%), Positives = 129/216 (59%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           +   +R+G++F    +L +A+THSSI   +++  +RLEFLGDR+LGL+++  L     SA
Sbjct: 8   TAFSQRLGHSFDKPEILIRAVTHSSIVSPHRDDNQRLEFLGDRVLGLVMAEALLKADPSA 67

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG L+ R+N+LV  E C++VAR++DL + +++     K       ++ AD +E++IAA+
Sbjct: 68  PEGLLAPRYNALVRREACAEVARQIDLGAVLKLGRSEMKSGGRRKEALLADAMEAVIAAV 127

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           Y DGG + A   + + W  R        RDAKT LQEWA A+  V P+Y    R+GPDH 
Sbjct: 128 YQDGGFDAARAAILRLWGDRIHNVAADARDAKTALQEWAQARGEVPPQYVEVARTGPDHQ 187

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           P FT+   ++     Q    SKR AEQ AA  +LK+
Sbjct: 188 PVFTIEARLASGPSEQATAGSKRQAEQAAATALLKK 223


>gi|114765524|ref|ZP_01444632.1| Ribonuclease III [Pelagibaca bermudensis HTCC2601]
 gi|114542117|gb|EAU45149.1| Ribonuclease III [Roseovarius sp. HTCC2601]
          Length = 227

 Score =  166 bits (419), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 86/201 (42%), Positives = 121/201 (60%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE+R+G+ F    LL +ALTHSS+S   +E  +RLEFLGDR+LGL+++  L     +A E
Sbjct: 10  LEERLGHRFDRPELLRRALTHSSMSAPGREDNQRLEFLGDRVLGLVMAEALLADDRNASE 69

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+L+ R+N+LV  ETC+ VARE+DL + +++             ++  D +E++IAA+YL
Sbjct: 70  GQLAPRYNALVRKETCADVAREVDLGAALKLGRSEMMSGGRRKMALLGDAMEAVIAAVYL 129

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           D G E A   V + W  R  +  +  RDAKT LQEWA A+    P Y  T RSGPDH P 
Sbjct: 130 DAGFEAAKDLVRRLWGDRVTRVDEDARDAKTSLQEWAQARGMPPPAYVETARSGPDHAPV 189

Query: 189 FTVVVEISGLAPAQGMDCSKR 209
           FT+   +S    AQ    +KR
Sbjct: 190 FTIEARLSSGETAQATAGAKR 210


>gi|254486436|ref|ZP_05099641.1| ribonuclease III [Roseobacter sp. GAI101]
 gi|214043305|gb|EEB83943.1| ribonuclease III [Roseobacter sp. GAI101]
          Length = 228

 Score =  165 bits (417), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 87/208 (41%), Positives = 126/208 (60%), Gaps = 6/208 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            E RIGY F+   LL +A+TH+S+S + ++  +RLEFLGDR+LGL+++  L      A E
Sbjct: 10  FEGRIGYKFSKPELLIRAVTHASMSSANRDDNQRLEFLGDRVLGLVMAEALLMLDPKATE 69

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA---DVVESLIAA 125
           G+L+ RFN+LV  E C+ VARE+D+ + +++    R ++ S     QA   D +E++IAA
Sbjct: 70  GQLAPRFNALVRKEACADVAREIDMGAVLKLG---RSEMLSGGRRKQALLGDAIEAIIAA 126

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           +Y+DGG + A   + + W  R     +  RDAKT LQEWA A+    P Y  T R GPDH
Sbjct: 127 VYMDGGFDAARDLIIRLWGDRVQTVKQDARDAKTALQEWAQARGFPPPSYVQTDRQGPDH 186

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            P FT+  ++   A A  +  SKR AEQ
Sbjct: 187 APVFTITAKVQNGASAVAVAPSKRQAEQ 214


>gi|89053013|ref|YP_508464.1| ribonuclease III [Jannaschia sp. CCS1]
 gi|122499604|sp|Q28V23|RNC_JANSC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|88862562|gb|ABD53439.1| RNAse III [Jannaschia sp. CCS1]
          Length = 227

 Score =  165 bits (417), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 89/209 (42%), Positives = 124/209 (59%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71
           R+GY F + +LL +ALTHSS+S   +   +RLEFLGDR+LGL+++  +      AKEG L
Sbjct: 13  RLGYVFEDPALLARALTHSSLSSPTRGDNQRLEFLGDRVLGLVMAEAVLAADTDAKEGTL 72

Query: 72  SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131
           + RFN+LV  E C+ VAR++DL + +R+             ++  D +E++IAA+YLDGG
Sbjct: 73  APRFNALVRKEACADVARQIDLGAAMRLGKSEMSAGGRRRMALLGDAMEAVIAAVYLDGG 132

Query: 132 IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
              A   V + W +R     +  RDAKT LQEWA A+    P Y    RSGPDH P F V
Sbjct: 133 FASARDLVLRLWSERVQSVEEDARDAKTALQEWAQARGMAPPTYTEVARSGPDHAPVFRV 192

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            V +S    A+    +KR AEQ AA ++L
Sbjct: 193 RVTLSSGENAEAQAKAKRQAEQQAAKDLL 221


>gi|254439178|ref|ZP_05052672.1| ribonuclease III [Octadecabacter antarcticus 307]
 gi|198254624|gb|EDY78938.1| ribonuclease III [Octadecabacter antarcticus 307]
          Length = 229

 Score =  164 bits (416), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 91/213 (42%), Positives = 124/213 (58%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           + RIG+ FA    L +A+THSS+S   ++  +RLEFLGDR+LGL++S  L     +A EG
Sbjct: 11  QDRIGHTFAKPDQLIRAVTHSSMSSPNRDDNQRLEFLGDRVLGLVMSEALLQADVNAPEG 70

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
            L+ RFN+LV  ETC+ VARE+DL + +++             ++ AD +E++IAA+Y+D
Sbjct: 71  LLAPRFNALVRKETCADVAREIDLGAVLKLGRSEMLTGGRRKEALLADAMEAVIAAVYID 130

Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
            G +VA   V   W  R     K  RD KT LQEWA  +    P Y  T RSGPDH P F
Sbjct: 131 AGFDVARERVVALWGDRITNVEKDARDPKTALQEWAQGQGEPPPSYIETARSGPDHAPIF 190

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           T+ V +       G   SKR AEQ AA  +L+R
Sbjct: 191 TIEVRLQSGPTDIGQAPSKRQAEQAAAKSLLER 223


>gi|158423628|ref|YP_001524920.1| ribonuclease III [Azorhizobium caulinodans ORS 571]
 gi|226735365|sp|A8I3B5|RNC_AZOC5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|158330517|dbj|BAF88002.1| ribonuclease III [Azorhizobium caulinodans ORS 571]
          Length = 235

 Score =  164 bits (415), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 96/225 (42%), Positives = 138/225 (61%), Gaps = 3/225 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNH 62
           ++ LE R+G++FA+RS L  ALTH S          SY+RLEFLGD +LG ++S +L+  
Sbjct: 7   FAALEARLGHSFADRSHLVLALTHISSVKGQAVRVRSYQRLEFLGDHVLGSVVSHMLYAA 66

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F  A+EGELS R   LV  E C++VA+++ L  ++R+     +       +I ADV E++
Sbjct: 67  FPKAEEGELSRRLAELVREEACAEVAQDMGLGPYLRLGPGEAQSGARQRRAILADVAEAV 126

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +AA+YLDGG E A   V+++W+ R     +  RD KT LQEWA A+    P Y+   RSG
Sbjct: 127 VAAVYLDGGYEAASALVERFWRGRLEAPRRPLRDPKTVLQEWAQARGLPPPVYRDVERSG 186

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           PDH PRF V V++ GL  A+    SK+ A++ AA+  L REG+ T
Sbjct: 187 PDHAPRFRVAVDLPGLECAEAEGGSKQTAQKAAASAFLAREGVVT 231


>gi|218530503|ref|YP_002421319.1| ribonuclease III [Methylobacterium chloromethanicum CM4]
 gi|218522806|gb|ACK83391.1| Ribonuclease III [Methylobacterium chloromethanicum CM4]
          Length = 256

 Score =  162 bits (411), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 92/223 (41%), Positives = 126/223 (56%), Gaps = 6/223 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNH 62
           + LE RIG+ FA+ +LL  ALTH  +S + Q     SY+RLEFLGDR+LGL ++  L+  
Sbjct: 25  AVLEARIGHVFADPTLLPLALTH--VSKAGQSGRVGSYQRLEFLGDRVLGLAVAETLYKA 82

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
              A+EGELS R   LV  ETC+ VA   ++   + +     +       +I ADV E++
Sbjct: 83  LPGAEEGELSRRLAGLVRRETCAVVAEAWEVGPHLNLGPGEIRTGGRRNQTILADVCEAI 142

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           + A++LD G E     V + ++     +    RDAK+ LQEWA A+    P Y+V  RSG
Sbjct: 143 LGAVFLDAGYEATRAIVQRAFRPGEETAAPRGRDAKSALQEWAMARSLAIPVYEVVERSG 202

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           PDH P F +   + G+ P  G   SKR AEQ AA  VL REGI
Sbjct: 203 PDHAPVFRIAARVEGIEPGYGEGASKRVAEQEAARAVLAREGI 245


>gi|254293934|ref|YP_003059957.1| ribonuclease III [Hirschia baltica ATCC 49814]
 gi|254042465|gb|ACT59260.1| ribonuclease III [Hirschia baltica ATCC 49814]
          Length = 255

 Score =  162 bits (411), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 85/220 (38%), Positives = 132/220 (60%), Gaps = 2/220 (0%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +T+++  G  F + SLL++A TH+S     +   S ERLEFLGDR+LGL+ ++ L   F+
Sbjct: 33  ATIQEIAGIKFKDVSLLDRAFTHTSAVPGEAADWSNERLEFLGDRVLGLVAASQLITRFE 92

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             +EG L+ R N+LVS +TC+++A E++L  ++ + +       +   S+ A+V E+LI 
Sbjct: 93  KEREGGLAPRLNALVSRDTCAKIAAEINLGQYLILDASESSAGGTTKPSLLANVTEALIG 152

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A+YLD G+  +  F+ KYWK+         RD K+ LQEWA       P Y+   R+GPD
Sbjct: 153 AIYLDAGLAASERFIVKYWKEYFKTLTDVPRDPKSALQEWAQGDGRPAPNYENIDRTGPD 212

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           H P FTV V + G+ PA+G   SK+ A++ AA+ +L   G
Sbjct: 213 HAPVFTVEVRVEGVRPAKGEGSSKQEAQRAAASAMLNNVG 252


>gi|163851697|ref|YP_001639740.1| ribonuclease III [Methylobacterium extorquens PA1]
 gi|163663302|gb|ABY30669.1| Ribonuclease III [Methylobacterium extorquens PA1]
          Length = 256

 Score =  162 bits (411), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 92/223 (41%), Positives = 126/223 (56%), Gaps = 6/223 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNH 62
           + LE RIG+ FA+ +LL  ALTH  +S + Q     SY+RLEFLGDR+LGL ++  L+  
Sbjct: 25  AVLEARIGHVFADPTLLPLALTH--VSKAGQSGRVGSYQRLEFLGDRVLGLAVAETLYKA 82

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
              A+EGELS R   LV  ETC+ VA   ++   + +     +       +I ADV E++
Sbjct: 83  LPGAEEGELSRRLAGLVRRETCAVVAEAWEVGPHLNLGPGEIQTGGRRNQTILADVCEAI 142

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           + A++LD G E     V + ++     +    RDAK+ LQEWA A+    P Y+V  RSG
Sbjct: 143 LGAVFLDAGYEATRAIVQRAFRPGEETAAPRGRDAKSALQEWAMARSLAIPVYEVVERSG 202

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           PDH P F +   + G+ P  G   SKR AEQ AA  VL REGI
Sbjct: 203 PDHAPVFRIAARVEGIEPGYGEGASKRVAEQEAARAVLAREGI 245


>gi|240138862|ref|YP_002963337.1| ribonuclease III [Methylobacterium extorquens AM1]
 gi|240008834|gb|ACS40060.1| ribonuclease III [Methylobacterium extorquens AM1]
          Length = 256

 Score =  162 bits (410), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 92/223 (41%), Positives = 126/223 (56%), Gaps = 6/223 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNH 62
           + LE RIG+ FA+ +LL  ALTH  +S + Q     SY+RLEFLGDR+LGL ++  L+  
Sbjct: 25  AVLEARIGHVFADPTLLPLALTH--VSKAGQSGRVGSYQRLEFLGDRVLGLAVAETLYKA 82

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
              A+EGELS R   LV  ETC+ VA   ++   + +     +       +I ADV E++
Sbjct: 83  LPGAEEGELSRRLAGLVRRETCAVVAEAWEVGPHLNLGPGEIQTGGRRNQTILADVCEAI 142

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           + A++LD G E     V + ++     +    RDAK+ LQEWA A+    P Y+V  RSG
Sbjct: 143 LGAVFLDAGYEATRAIVQRAFRPGEETAAPRGRDAKSALQEWAMARSLAIPVYEVVERSG 202

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           PDH P F +   + G+ P  G   SKR AEQ AA  VL REGI
Sbjct: 203 PDHAPVFRIAARVEGIEPGYGEGASKRVAEQEAARAVLAREGI 245


>gi|254561469|ref|YP_003068564.1| ribonuclease III [Methylobacterium extorquens DM4]
 gi|254268747|emb|CAX24708.1| ribonuclease III [Methylobacterium extorquens DM4]
          Length = 256

 Score =  162 bits (410), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 92/223 (41%), Positives = 126/223 (56%), Gaps = 6/223 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNH 62
           + LE RIG+ FA+ +LL  ALTH  +S + Q     SY+RLEFLGDR+LGL ++  L+  
Sbjct: 25  AVLEARIGHVFADPTLLPLALTH--VSKAGQSGRVGSYQRLEFLGDRVLGLAVAETLYKA 82

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
              A+EGELS R   LV  ETC+ VA   ++   + +     +       +I ADV E++
Sbjct: 83  LPGAEEGELSRRLAGLVRRETCAVVAEAWEVGPHLNLGPGEIQTGGRRNQTILADVCEAI 142

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           + A++LD G E     V + ++     +    RDAK+ LQEWA A+    P Y+V  RSG
Sbjct: 143 LGAVFLDAGYEATRAIVQRAFRPGEETAAPRGRDAKSALQEWAMARSLAIPVYEVVERSG 202

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           PDH P F +   + G+ P  G   SKR AEQ AA  VL REGI
Sbjct: 203 PDHAPVFRIAARVEGIEPGYGEGASKRVAEQEAARAVLAREGI 245


>gi|332187768|ref|ZP_08389502.1| ribonuclease III [Sphingomonas sp. S17]
 gi|332012118|gb|EGI54189.1| ribonuclease III [Sphingomonas sp. S17]
          Length = 235

 Score =  162 bits (409), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 88/206 (42%), Positives = 119/206 (57%), Gaps = 3/206 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S L +  G A  + +   +ALTH S +    E+YERLEFLGDR+LGL+++  L+  F + 
Sbjct: 20  SWLTQIFGRAPQDSAPFHRALTHGSQA---AENYERLEFLGDRVLGLIMAEWLWEQFPNE 76

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+LS R NSLV+   C+ VAR+L +   +R+    R D  S   ++  DV+E+LI A 
Sbjct: 77  PEGQLSRRLNSLVTGPVCADVARDLGVRDHLRLGKQARDDGASDSDNVLGDVMEALIGAW 136

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           Y + G++ A  FV K W  R    GK  +  K+ LQEWA A     PEY+VT RSGP H 
Sbjct: 137 YREAGLDAARAFVRKAWGDRVHSQGKAPQHPKSALQEWAAAHNRKAPEYEVTDRSGPHHA 196

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAE 212
           PRFTV V I   A A     +K+ AE
Sbjct: 197 PRFTVTVRIGRTAEASASGANKQEAE 222


>gi|310815100|ref|YP_003963064.1| ribonuclease III [Ketogulonicigenium vulgare Y25]
 gi|308753835|gb|ADO41764.1| ribonuclease III [Ketogulonicigenium vulgare Y25]
          Length = 228

 Score =  162 bits (409), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 88/210 (41%), Positives = 121/210 (57%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71
           R+G+ F N  +L +ALTH S S   +   +RLEFLGDR+LGL+++  L      A EG++
Sbjct: 13  RLGHRFINTEVLMRALTHGSASSPDRSDNQRLEFLGDRVLGLVVAEALLAADKFATEGQI 72

Query: 72  SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131
           + RFN LV  ETC++VAR +DL + +R+     K       ++ AD +E++IAA+YLD G
Sbjct: 73  APRFNRLVRRETCAEVARAMDLGAALRIGRSEMKTGGRKKEAVLADAMEAVIAAVYLDAG 132

Query: 132 IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
            + A + V K+W           RDAKT LQEWA  +    P Y    RSGPDH P FTV
Sbjct: 133 FDAAKSVVLKHWAAHIANVDDDARDAKTALQEWAQGRGETPPAYIEEARSGPDHAPIFTV 192

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V +     A G   SKR AE  AA ++L+
Sbjct: 193 RVTLQSGPTATGEAGSKRLAEHAAATKLLQ 222


>gi|302383079|ref|YP_003818902.1| ribonuclease III [Brevundimonas subvibrioides ATCC 15264]
 gi|302193707|gb|ADL01279.1| ribonuclease III [Brevundimonas subvibrioides ATCC 15264]
          Length = 237

 Score =  162 bits (409), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 88/227 (38%), Positives = 131/227 (57%), Gaps = 8/227 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQES-------YERLEFLGDRILGLLISTLL 59
           + L +R+G+ F + +LLE+ALTHSS+     ++        ERLEFLGDR+LGLL++  L
Sbjct: 10  TALVQRLGHDFRDPALLERALTHSSVGEGADKAAGKPARHNERLEFLGDRVLGLLVAQRL 69

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
            + F +A EGELS R ++LV    C +V   L +   +R+S    K        + AD V
Sbjct: 70  HHDFPAADEGELSSRLHALVDKHACGRVGEALKIGDALRLSPGETKTGGRRKEGVVADAV 129

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           E+L+AA++LDGG+E A    D+ W    A  + +   + K+ LQEWA       P Y+V 
Sbjct: 130 EALLAAVFLDGGLEAARAVFDRAWAHELASPAPRALNNPKSALQEWAQGHGRPLPSYRVA 189

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            ++G DH P FTV V I G+ P   +  S++ AE+ AA  +L+REG+
Sbjct: 190 SQTGSDHAPTFTVEVSIEGVEPLTAVGRSRQDAEKAAATALLQREGV 236


>gi|85708367|ref|ZP_01039433.1| ribonuclease III [Erythrobacter sp. NAP1]
 gi|85689901|gb|EAQ29904.1| ribonuclease III [Erythrobacter sp. NAP1]
          Length = 232

 Score =  161 bits (408), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 91/232 (39%), Positives = 134/232 (57%), Gaps = 8/232 (3%)

Query: 1   MSALRYSTLE--KRIGYAFANRSLLEKALTHSSISHSY------QESYERLEFLGDRILG 52
           MSAL   T +    IG+   + S+  +ALTH S + ++      +  Y+RLEFLGDR+LG
Sbjct: 1   MSALPPETRDWLGTIGFEVKDGSMWLEALTHGSFNSTHTATGQPEADYQRLEFLGDRVLG 60

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
           L +++ LF   D +KEG+LS R N+LVS  TC+++AR + L+  IR+    R+D  S   
Sbjct: 61  LSVASWLFRSSDRSKEGQLSQRLNALVSGATCARIARTIGLSDHIRLGKQAREDGGSDSD 120

Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT 172
           +I  DV+E++I A +LD G +     + + W+          +  K+ LQEWA       
Sbjct: 121 NILGDVMEAIIGASFLDNGFDTTRAIILELWEPELAGDAGKAKHPKSALQEWAAGNRRAM 180

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           P+Y V  RSGPDH  RFTV V I  +  A+G+  SK  AE++AAAE L++ G
Sbjct: 181 PQYDVIDRSGPDHAARFTVRVSIHKVGEAEGVATSKHEAEKLAAAEFLEKYG 232


>gi|260432756|ref|ZP_05786727.1| ribonuclease III [Silicibacter lacuscaerulensis ITI-1157]
 gi|260416584|gb|EEX09843.1| ribonuclease III [Silicibacter lacuscaerulensis ITI-1157]
          Length = 226

 Score =  161 bits (407), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 87/202 (43%), Positives = 122/202 (60%), Gaps = 6/202 (2%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           +KR+G+ FAN  LL +ALTH S+S + +   +RLEFLGDR+LGL++++ L     +A EG
Sbjct: 11  QKRLGHQFANPELLVRALTHGSVSSATRPDNQRLEFLGDRVLGLVMASALLEADKTATEG 70

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA---DVVESLIAAL 126
           +L+ RFN+LV  ETC+ VAR++DL + +++    R ++ S     QA   D +E++IAA+
Sbjct: 71  QLAPRFNALVRKETCADVARQIDLGAVLKLG---RSEMMSGGRRKQALLGDAMEAVIAAV 127

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           Y D G E A   V K W  R  +     RDAKT LQEWA A+    P Y    R+GPDH 
Sbjct: 128 YRDAGFEAARDVVLKLWGDRLHQVKADARDAKTALQEWAQARGQKPPSYVELSRTGPDHA 187

Query: 187 PRFTVVVEISGLAPAQGMDCSK 208
           P FT+V  +     AQ    SK
Sbjct: 188 PVFTIVARLESGPEAQATAPSK 209


>gi|114770106|ref|ZP_01447644.1| Ribonuclease III [alpha proteobacterium HTCC2255]
 gi|114548943|gb|EAU51826.1| Ribonuclease III [alpha proteobacterium HTCC2255]
          Length = 226

 Score =  161 bits (407), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 90/214 (42%), Positives = 124/214 (57%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           +   KR+GY F    LL +A+THSS+S + +   +R EFLGDR+LGL IS  LF+    A
Sbjct: 8   TAFSKRLGYDFQKPELLIQAMTHSSLSSTTRGDNQRFEFLGDRVLGLSISDALFHKDSDA 67

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG L+ RFN+LV  ETC+++A E+ L   +++             ++  D +E++I A+
Sbjct: 68  SEGLLAPRFNALVRKETCAEIAIEIKLGEALKMGRSEMLSGGRRKIAVLGDAMEAVIGAV 127

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           YLD G E+A   V + W      +    RD+KT LQEWA AK   TP+Y    RSGPDH 
Sbjct: 128 YLDAGFEIARDMVIRLWSNHIDNAAHDARDSKTILQEWAQAKKLPTPKYIEVDRSGPDHA 187

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           P FT+ V I     A+    SKRAA Q AAA++L
Sbjct: 188 PIFTIEVSIETGQSAKAQAQSKRAASQDAAADLL 221


>gi|2500552|sp|Q52698|RNC_RHOCA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|1177610|emb|CAA92647.1| endoribonuclease III [Rhodobacter capsulatus]
          Length = 228

 Score =  160 bits (406), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 90/222 (40%), Positives = 127/222 (57%), Gaps = 12/222 (5%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S    R+G+ F     L +ALTHSS+  + +   +RLEFLGDR+LGL ++  LF+    A
Sbjct: 8   SAFMDRLGHRFTTPEHLVRALTHSSLGSATRPDNQRLEFLGDRVLGLSMAEALFHADGRA 67

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIR------VSSDLRKDVCSFMTSIQADVVE 120
            EG+L+ RFN+LV  ETC+ VAR++DL + ++      +S   RKD      ++  D +E
Sbjct: 68  SEGQLAPRFNALVRKETCAAVARDIDLGAVLKLGRSEMMSGGRRKD------ALLGDAME 121

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           ++IAA+YLD G EVA   V + W  R        RD KT LQEWA A+    P Y+   R
Sbjct: 122 AVIAAVYLDAGFEVARALVLRLWAARIQSVDNDARDPKTALQEWAQARGLPPPRYETLGR 181

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            GPDH P+F + V ++     +    SKR AEQ AA  +L+R
Sbjct: 182 DGPDHAPQFRIAVVLASGETEEAQAGSKRNAEQAAAKALLER 223


>gi|254459764|ref|ZP_05073180.1| ribonuclease III [Rhodobacterales bacterium HTCC2083]
 gi|206676353|gb|EDZ40840.1| ribonuclease III [Rhodobacteraceae bacterium HTCC2083]
          Length = 228

 Score =  160 bits (405), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 88/214 (41%), Positives = 120/214 (56%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L+KRI Y F    LL +A+THSS+S   +   +RLEFLGDR+LGL+++  L      A E
Sbjct: 10  LQKRIDYRFEQGELLTEAVTHSSMSSPSRGDNQRLEFLGDRVLGLVMAEALLGADVKASE 69

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+L+ R+N+LV  ETC+ VAR++ L   +R+     K       ++  D +E+LIAA+Y+
Sbjct: 70  GQLAPRYNALVRKETCADVARDIGLGDVLRLGRSEMKSGGRRKLALLGDGMEALIAAVYV 129

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           DGG   A   + + W  R        RD KT LQEWA ++    P Y  T RSGPDH P 
Sbjct: 130 DGGFNAAQALILRLWGSRITSVEADARDPKTSLQEWAQSRGLTPPAYVETARSGPDHAPH 189

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           FT+   +     A     SKR AEQ AA  +L R
Sbjct: 190 FTIEARLDTGETASAEAGSKRLAEQAAAKALLTR 223


>gi|294678827|ref|YP_003579442.1| ribonuclease III [Rhodobacter capsulatus SB 1003]
 gi|294477647|gb|ADE87035.1| ribonuclease III [Rhodobacter capsulatus SB 1003]
          Length = 228

 Score =  160 bits (405), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 90/222 (40%), Positives = 127/222 (57%), Gaps = 12/222 (5%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S    R+G+ F     L +ALTHSS+  + +   +RLEFLGDR+LGL ++  LF+    A
Sbjct: 8   SAFMDRLGHRFTTPEHLVRALTHSSLGSATRPDNQRLEFLGDRVLGLSMAEALFHADGRA 67

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIR------VSSDLRKDVCSFMTSIQADVVE 120
            EG+L+ RFN+LV  ETC+ VAR++DL + ++      +S   RKD      ++  D +E
Sbjct: 68  SEGQLAPRFNALVRKETCAAVARDIDLGAVLKLGRSEMMSGGRRKD------ALLGDAME 121

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           ++IAA+YLD G EVA   V + W  R        RD KT LQEWA A+    P Y+   R
Sbjct: 122 AVIAAVYLDAGFEVARALVLRLWAGRIQSVDNDARDPKTALQEWAQARGLPPPRYETLGR 181

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            GPDH P+F + V ++     +    SKR AEQ AA  +L+R
Sbjct: 182 EGPDHAPQFRIAVVLASGETEEAQAGSKRNAEQAAAKALLER 223


>gi|85068686|gb|ABC54695.1| ribonuclease III [Ehrlichia sp. P-Mtn]
          Length = 228

 Score =  160 bits (404), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 88/219 (40%), Positives = 130/219 (59%), Gaps = 3/219 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHF 63
           + + + IGY+F N  LL +ALTH S+S S      +YERLEFLGD +L L+IS +LFN F
Sbjct: 4   NNISEIIGYSFKNIQLLNEALTHPSVSSSKDNINFNYERLEFLGDAVLNLVISEMLFNIF 63

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG L+ +  +LV      +VA+ ++L +FI +S   R    +  +S   + +E+LI
Sbjct: 64  PKDTEGNLAKKKTALVCGTKLVEVAQFINLGTFIIMSDGERTCGGANNSSNLENALEALI 123

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            A+YLDGG++ A  F+  +WK  A       +DAKT LQEWA A+  + P Y +  +SGP
Sbjct: 124 GAIYLDGGLKAAKNFIFLFWKNSAKHMKVPPQDAKTILQEWAQAQGLLAPSYHIVNKSGP 183

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           DH+P FTV V ++     Q    +K+ AEQ AA+ +L +
Sbjct: 184 DHNPTFTVEVRMNSHETLQATGNNKKIAEQKAASLMLAK 222


>gi|85705112|ref|ZP_01036212.1| Ribonuclease III [Roseovarius sp. 217]
 gi|85670434|gb|EAQ25295.1| Ribonuclease III [Roseovarius sp. 217]
          Length = 238

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 86/213 (40%), Positives = 123/213 (57%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           + R+G+ F    LL +ALTHSS+    ++  +RLEFLGDR+LGL++S  L +    A EG
Sbjct: 22  QTRLGHEFTATELLIRALTHSSMVTPNRDDNQRLEFLGDRVLGLVMSEALLSQDKGATEG 81

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           +L+ RFN+LV  E C+ VARE+DL + +++             ++  D +E++IAA+YLD
Sbjct: 82  QLAPRFNALVRKEACADVAREIDLGAVLKLGRSEMLSGGRRKEALLGDAMEAVIAAIYLD 141

Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
            G + A   V + W  R  +     RDAKT LQEWA A+    P+Y    R GPDH P F
Sbjct: 142 AGFDAARAVVLRLWGARIGEVKDDARDAKTALQEWAQARGLPPPDYIELRRKGPDHAPVF 201

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           T+  ++     A+    SKR AEQ AA  +L R
Sbjct: 202 TISAQLKSGESAEATAGSKRQAEQTAAKALLAR 234


>gi|84515163|ref|ZP_01002526.1| ribonuclease III [Loktanella vestfoldensis SKA53]
 gi|84511322|gb|EAQ07776.1| ribonuclease III [Loktanella vestfoldensis SKA53]
          Length = 226

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 90/216 (41%), Positives = 128/216 (59%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           ++  +R+GY+F    LL +++THSS+   +++  +RLEFLGDR+LGL+++  L     SA
Sbjct: 8   ASFSQRLGYSFVRPDLLVRSVTHSSMVSIHRDDNQRLEFLGDRVLGLVMAEALLKADPSA 67

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG L+ R+N+LV  ETC+ VARE+DL + I++     K       ++ AD +E++IAA+
Sbjct: 68  PEGLLAPRYNALVRRETCADVAREVDLGAVIKLGRSEMKSGGRRKEALLADAMEAVIAAI 127

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           Y DGG + A   V   W  R        RDAKT LQEWA A+    P Y  T R+GPDH 
Sbjct: 128 YQDGGFDAARKVVLHLWGARITNVADDARDAKTALQEWAQARGEAPPSYTETARTGPDHQ 187

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           P FT+ V +           SKR AEQ AAA +LK+
Sbjct: 188 PAFTIAVTLESGQTETATAGSKRQAEQAAAAALLKK 223


>gi|307292852|ref|ZP_07572698.1| ribonuclease III [Sphingobium chlorophenolicum L-1]
 gi|306880918|gb|EFN12134.1| ribonuclease III [Sphingobium chlorophenolicum L-1]
          Length = 227

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 88/210 (41%), Positives = 122/210 (58%), Gaps = 3/210 (1%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           IG    + +   +ALTH S +     +YERLEFLGDRILGLLI+  +++ F +  EG+LS
Sbjct: 18  IGRKPKDPAAFTQALTHGSAN---AVNYERLEFLGDRILGLLIAEWVYDRFSTEPEGKLS 74

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
            RFN+LVS ETC++VAR   + + + +    R D  +   ++  DV+E+LI ALYL+GG+
Sbjct: 75  RRFNALVSGETCAEVARSAGVPTHLILGKQARDDGAADSDNVLGDVMEALIGALYLEGGL 134

Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
           + A T V + W  R        +  K+ LQEWA A     PEY +T RSGP H  +FTV 
Sbjct: 135 KEARTLVRRLWADRVDTQASAPKHPKSALQEWAAANKRKPPEYAMTDRSGPHHALKFTVT 194

Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           V I G   A     SK+ AE  AA  +L +
Sbjct: 195 VSIKGAGEASATGGSKQEAETAAAKALLDK 224


>gi|84684005|ref|ZP_01011907.1| Ribonuclease III [Maritimibacter alkaliphilus HTCC2654]
 gi|84667758|gb|EAQ14226.1| Ribonuclease III [Rhodobacterales bacterium HTCC2654]
          Length = 226

 Score =  159 bits (402), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 86/214 (40%), Positives = 123/214 (57%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
            RIG+ F    LL +ALTH SIS   +   +RLEFLGDR+LGL+++  +      A EG+
Sbjct: 12  NRIGHDFKRPELLIRALTHGSISSDTRPDNQRLEFLGDRVLGLVMAEAMLAADKEASEGQ 71

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           L+ RFN+LV  E C+ VAR+++L + +++    +        ++  D +E++IAA+YLD 
Sbjct: 72  LAPRFNALVRKEACADVARQVELGAVLKLGRSEQMSGGRRKQALLGDAMEAVIAAVYLDA 131

Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           G E A   + + W  R     +  RDAKT LQEWA A+    P Y    R GPDH P FT
Sbjct: 132 GFEAAREMIVRLWGDRIGAVEEDARDAKTALQEWAQARKMQPPTYVEIARDGPDHAPEFT 191

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +  ++     A+    SKRAAEQ AA  +L+R G
Sbjct: 192 IEAQLENGEAARAKANSKRAAEQDAARALLERLG 225


>gi|315499946|ref|YP_004088749.1| ribonuclease iii [Asticcacaulis excentricus CB 48]
 gi|315417958|gb|ADU14598.1| ribonuclease III [Asticcacaulis excentricus CB 48]
          Length = 242

 Score =  159 bits (401), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 89/223 (39%), Positives = 126/223 (56%), Gaps = 6/223 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS-----HSYQESYERLEFLGDRILGLLISTLLFNHF 63
           LE ++GY FA+R LL+ ALTH+S+S      +     ERLEFLGDR+LGLL++  L   F
Sbjct: 19  LEAKLGYRFADRQLLDSALTHASVSDGRPKKTVSSDNERLEFLGDRVLGLLVAEALMQAF 78

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EGE+S R + LVS ETC+ VA  L + + +R++    K       +I  D  E+LI
Sbjct: 79  PQAAEGEMSQRLHGLVSRETCAAVAMSLGVGAAMRLAPGETKSGGRSNLTILGDACEALI 138

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           AA+YLDGG E A       W+     S  +   + K+ LQEWA  K   +P+Y++  RSG
Sbjct: 139 AAVYLDGGFETARRIFGPLWQPHIRASHSRSHLNPKSHLQEWAAQKKLPSPKYEIVERSG 198

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           PDH P F V + + G  P      S++ AE+ AA   ++  G+
Sbjct: 199 PDHAPIFKVALTLEGYDPVVASGKSRQEAEKAAALSFIEHAGL 241


>gi|89070097|ref|ZP_01157427.1| Ribonuclease III [Oceanicola granulosus HTCC2516]
 gi|89044318|gb|EAR50461.1| Ribonuclease III [Oceanicola granulosus HTCC2516]
          Length = 226

 Score =  158 bits (400), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 87/211 (41%), Positives = 125/211 (59%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71
           R+G+ F N  LL +ALTH S S + +   +RLEFLGDR+LGL+++  LF     A+EG L
Sbjct: 13  RLGHRFENPELLLRALTHPSFSSTGRGDNQRLEFLGDRVLGLVMAEALFEADPEAREGLL 72

Query: 72  SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131
           + R+N+LV  ETC++VARE+D+ + +++     K       ++ AD +E++IAA+Y D G
Sbjct: 73  APRYNALVRKETCAEVAREIDIGAVLKLGRSEMKTGGRRKEALLADAMEAVIAAIYRDAG 132

Query: 132 IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
              A   V  +W +R     +  RDAKT LQE A A+    P Y+   R GPDH P FT+
Sbjct: 133 FARAREVVRAHWGKRIGAVAEDARDAKTALQELAQARGEPPPGYREISRHGPDHQPLFTI 192

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            V ++    A+    SKR AEQ AA  +L R
Sbjct: 193 EVRLATGESARAEAGSKRQAEQAAARTLLDR 223


>gi|16125807|ref|NP_420371.1| ribonuclease III [Caulobacter crescentus CB15]
 gi|221234567|ref|YP_002517003.1| ribonuclease III [Caulobacter crescentus NA1000]
 gi|22654073|sp|Q9A805|RNC_CAUCR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807242|sp|B8H627|RNC_CAUCN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|13422947|gb|AAK23539.1| ribonuclease III [Caulobacter crescentus CB15]
 gi|220963739|gb|ACL95095.1| ribonuclease III [Caulobacter crescentus NA1000]
          Length = 231

 Score =  158 bits (399), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 100/219 (45%), Positives = 137/219 (62%), Gaps = 3/219 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE+RIG+ F +R LLE+ALTH+S+    ++    E LEF+GDR+LGLL +  L   F  A
Sbjct: 11  LERRIGHRFEDRELLERALTHASVGDGAKKVRDNEVLEFIGDRVLGLLAAEALAQRFPKA 70

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           KEGEL+ R N+LVS ETC++VAR+ +L   +R+S+   K       SI A   E+L+AAL
Sbjct: 71  KEGELAPRLNALVSRETCARVARKAELGPALRLSASSSKIGGRETDSILAGATEALMAAL 130

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           Y DGG+E A       W     ++G+ R RD KT LQEWA  +    P Y+V  R+GPDH
Sbjct: 131 YQDGGLEAARKVFLDLWNDEFDRAGEGRPRDPKTALQEWAQGQGRPLPTYRVLDRTGPDH 190

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            P FTV V ++G+ PA     S++ AE+ AA  +L+REG
Sbjct: 191 APVFTVEVSVTGVDPAIAKGKSRQEAEKAAAKALLEREG 229


>gi|163733862|ref|ZP_02141304.1| ribonuclease III [Roseobacter litoralis Och 149]
 gi|161392973|gb|EDQ17300.1| ribonuclease III [Roseobacter litoralis Och 149]
          Length = 228

 Score =  158 bits (399), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 84/203 (41%), Positives = 124/203 (61%), Gaps = 6/203 (2%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           +KR+G+ F   SLL +A+TH+S+S + +   +R+EFLGDR+LGL+++  L    + A EG
Sbjct: 11  QKRLGHQFNQPSLLAQAVTHASMSTANRGDNQRMEFLGDRVLGLVMAEALLGLDNDATEG 70

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA---DVVESLIAAL 126
           +L+ RFN+LV  ETC+ VARE+DL + +R+    R ++ S     QA   D +E++IAA+
Sbjct: 71  QLAPRFNALVRKETCADVAREIDLGAVLRLG---RSEMLSGGRRKQALLGDAIEAVIAAV 127

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           Y D G + A   + + W  R  +  +  RDAKT LQEWA A+    P Y+   R GPDH 
Sbjct: 128 YQDAGFDAARALILRLWGDRVHEVEEDARDAKTALQEWAQARGLQPPHYEEVHRKGPDHA 187

Query: 187 PRFTVVVEISGLAPAQGMDCSKR 209
           P FT+ V++S     Q    SKR
Sbjct: 188 PIFTISVQLSTGETDQATAGSKR 210


>gi|220927101|ref|YP_002502403.1| ribonuclease III [Methylobacterium nodulans ORS 2060]
 gi|219951708|gb|ACL62100.1| ribonuclease III [Methylobacterium nodulans ORS 2060]
          Length = 244

 Score =  158 bits (399), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 94/220 (42%), Positives = 132/220 (60%), Gaps = 1/220 (0%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           STLE++IG+ FA++ LL +ALTH S + +  ESY+RLEFLGDR+LGL ++  LF     A
Sbjct: 17  STLEEKIGHRFADQELLVRALTHVSAA-TGPESYQRLEFLGDRVLGLAVADGLFAALPGA 75

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+LS R + LV  E+C+ VA   D+   +++ +           +I ADV E+++ A+
Sbjct: 76  DEGDLSRRLSGLVRRESCAAVATAWDVGPHLKLGAGEVYGGGRRNPAILADVCEAILGAI 135

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           +LD G E A T +D+ +       G   RD K+ LQEWA      TP Y V  R+GPDH 
Sbjct: 136 FLDAGYEAAKTVIDRAFAAGNEVEGTRTRDPKSALQEWAQGLGLPTPTYAVVERAGPDHA 195

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           P F +   + G+AP  G+  SKR AEQ AA  +L REG+W
Sbjct: 196 PIFRIEARVLGVAPGVGVGGSKRLAEQEAARLLLMREGVW 235


>gi|329890079|ref|ZP_08268422.1| ribonuclease III [Brevundimonas diminuta ATCC 11568]
 gi|328845380|gb|EGF94944.1| ribonuclease III [Brevundimonas diminuta ATCC 11568]
          Length = 238

 Score =  157 bits (396), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 86/224 (38%), Positives = 127/224 (56%), Gaps = 5/224 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTLLFNH 62
           + L +R+G+ F + SLLE+ALTHSS+            ERLEFLGDR+LGLL++  L   
Sbjct: 14  AALRQRLGHDFEDASLLERALTHSSVGEGAGPQVPADNERLEFLGDRVLGLLVADRLVRD 73

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           + SA EG+LS R ++LV    C++V   L +   +R+S    K        + AD VE++
Sbjct: 74  YPSADEGQLSARLHALVDKSACARVGERLGVGDALRLSPGETKTGGRRKAGVIADAVEAI 133

Query: 123 IAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +AA+Y DGG+  A T  ++ W +  A        + K+ LQEWA  +    P Y+V  R+
Sbjct: 134 LAAVYRDGGLIAAQTVFERAWAEELAAPPSAAVTNPKSALQEWAQGQGRPLPTYEVVQRT 193

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           G DH P FTV   ++G  PA+    S++ AE+ AA  +LKRE +
Sbjct: 194 GSDHAPTFTVEATVTGYEPARAQGRSRQEAEKAAAIALLKREDV 237


>gi|330814142|ref|YP_004358381.1| signal peptidase I [Candidatus Pelagibacter sp. IMCC9063]
 gi|327487237|gb|AEA81642.1| signal peptidase I [Candidatus Pelagibacter sp. IMCC9063]
          Length = 224

 Score =  157 bits (396), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 87/215 (40%), Positives = 125/215 (58%), Gaps = 1/215 (0%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + +EK +   F N + LEKALTH SI+     + ERLEF+GDR+LGL+I+T L   +   
Sbjct: 7   TKVEKILNIKFKNTNFLEKALTHKSITKISASNNERLEFIGDRVLGLVIATKLSILYPED 66

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG L  +  SLV+ +TCSQ+  +L+L  +I +SS  +K+       I  D+ ESLI A+
Sbjct: 67  VEGSLDKKLASLVNKDTCSQIIEKLNLGKYILLSSSQQKNKIGH-KKIYGDLCESLIGAV 125

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           YLD G   A  FV   W++   +S     D+KT+LQE++   F V P YK     GP H 
Sbjct: 126 YLDKGFSEANKFVLSLWRENLKRSTIVEVDSKTQLQEYSLKFFKVLPIYKNLSNKGPSHK 185

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           P F + V+I+      G   SK+ AEQ+AA+++LK
Sbjct: 186 PSFKISVKITNSKLCTGEGTSKKKAEQLAASKLLK 220


>gi|126739723|ref|ZP_01755415.1| ribonuclease III [Roseobacter sp. SK209-2-6]
 gi|126719369|gb|EBA16079.1| ribonuclease III [Roseobacter sp. SK209-2-6]
          Length = 228

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 81/201 (40%), Positives = 116/201 (57%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            E+RIGY F    LL +ALTH S+S   ++  +RLEFLGDR+LGL+++T +      A E
Sbjct: 10  FEERIGYRFKRVDLLVRALTHPSVSSPNRKDNQRLEFLGDRVLGLVMATAMLESDKEASE 69

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+L+ RFN+LV  ETC+ VARE+DL + +++             ++  D +E++IAA+Y 
Sbjct: 70  GQLAPRFNALVRKETCADVAREIDLGAVLKLGRSEMMSGGRRKLALLGDGMEAVIAAVYK 129

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           D G EVA   + + W QR  +  +  RD KT LQE+  A+    P Y    R GPDH+P 
Sbjct: 130 DAGFEVAQDMILRLWGQRIFQVEEDARDPKTALQEYVQARRQPPPAYVQVSRQGPDHEPI 189

Query: 189 FTVVVEISGLAPAQGMDCSKR 209
           FT+ V +      Q    SKR
Sbjct: 190 FTIAVRLQDGTEEQASAGSKR 210


>gi|197105333|ref|YP_002130710.1| ribonuclease III [Phenylobacterium zucineum HLK1]
 gi|238690159|sp|B4RCU4|RNC_PHEZH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|196478753|gb|ACG78281.1| ribonuclease III [Phenylobacterium zucineum HLK1]
          Length = 238

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 89/222 (40%), Positives = 129/222 (58%), Gaps = 4/222 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
           + LE+RIGY F +R LLE+ALTH+S+    +     ERLEFLGDR+L L  +  L     
Sbjct: 9   AELERRIGYVFTDRDLLERALTHASVGDGARAVRHNERLEFLGDRVLNLCAAERLMALDP 68

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            A+EGE+S    SLV+   C++ A+   L   +R+S+   K       ++  D  E+LIA
Sbjct: 69  DAREGEMSRLLASLVNYHACARAAKRAGLQEALRLSASATKVGARKSDAVLGDACEALIA 128

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           ALY+DGG+E A  F  K+W +   +  + R +D KT+LQEW        P Y++  + GP
Sbjct: 129 ALYIDGGLETARAFFLKFWDEEFARLDEPRAKDPKTQLQEWVQGMGLPLPTYEIVSQEGP 188

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA-AEVLKREG 224
            H P FTV V+++G    +G   S++AAE+ AA   +LKREG
Sbjct: 189 PHAPSFTVEVQVAGFGAERGEGRSRQAAEKAAAQCMLLKREG 230


>gi|188581484|ref|YP_001924929.1| ribonuclease III [Methylobacterium populi BJ001]
 gi|179344982|gb|ACB80394.1| Ribonuclease III [Methylobacterium populi BJ001]
          Length = 256

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 89/221 (40%), Positives = 121/221 (54%), Gaps = 2/221 (0%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64
           + LE RIG+ F + +LL  ALTH S +       SY+RLEFLGDR+LGL ++  L+    
Sbjct: 25  AVLEARIGHVFTDPTLLPLALTHVSKAGPSGRVGSYQRLEFLGDRVLGLAVAETLYRALP 84

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            A+EGELS R   LV  ETC+ VA   ++   + +     +       +I ADV E+++ 
Sbjct: 85  DAEEGELSRRLAGLVRRETCAAVAEAWEVGPHLNLGPGEIQTGGRRNQTILADVCEAILG 144

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A++LD G E     V + ++          RDAK+ LQEWA A+    P Y+V  RSGPD
Sbjct: 145 AVFLDAGYEATRAIVQRSFRPGEDTGAPRGRDAKSALQEWAMARSLAIPVYEVVERSGPD 204

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           H P F + V +  + P  G   SKR AEQ AA  VL RE I
Sbjct: 205 HAPVFRIAVRVESIEPGYGEGASKRVAEQEAARAVLDRENI 245


>gi|119383173|ref|YP_914229.1| ribonuclease III [Paracoccus denitrificans PD1222]
 gi|119372940|gb|ABL68533.1| RNAse III [Paracoccus denitrificans PD1222]
          Length = 241

 Score =  155 bits (393), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 84/213 (39%), Positives = 123/213 (57%), Gaps = 1/213 (0%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
           +R+G+ F+   LL +ALTH SI+ + +   +RLEFLGDR+LGL I+  LF+   +A EG+
Sbjct: 24  ERLGHEFSRPELLRRALTHGSIASTTRPDNQRLEFLGDRVLGLTIAEALFSADRAATEGQ 83

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           L+ R+N+LV  ETC+ +ARE+ L   +++             ++ AD +E++IAA+YLD 
Sbjct: 84  LAPRYNALVKGETCAAIAREIGLGEVLKLGRSEMMSGGRRKEALLADAMEAVIAAVYLDA 143

Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           G E A   V   W  R        RDAKT LQEWA A+    P Y    R+GPDH P F 
Sbjct: 144 GFETARGVVLGLWSDRLANVETDARDAKTALQEWAQAQGMSPPRYVQIARTGPDHAPEFQ 203

Query: 191 VVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           + V +  G   +     +KR+ EQ AA  +L++
Sbjct: 204 ITVRLDDGREASASGKGTKRSIEQAAATAMLEQ 236


>gi|110678686|ref|YP_681693.1| ribonuclease III [Roseobacter denitrificans OCh 114]
 gi|123362135|sp|Q16AI6|RNC_ROSDO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|109454802|gb|ABG31007.1| ribonuclease III [Roseobacter denitrificans OCh 114]
          Length = 228

 Score =  155 bits (392), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 83/205 (40%), Positives = 124/205 (60%), Gaps = 6/205 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           + +KR+G+ F   +LL +A+TH+S+S + +   +R+EFLGDR+LGL+++  L    ++A 
Sbjct: 9   SFQKRLGHQFNQPALLAQAVTHASMSTANRGDNQRMEFLGDRVLGLVMAEALLRLDNNAT 68

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA---DVVESLIA 124
           EG+L+ RFN+LV  ETC+ VARE+DL + +R+    R ++ S     QA   D +E++IA
Sbjct: 69  EGQLAPRFNALVRKETCADVAREIDLGAVLRLG---RSEMLSGGRRKQALLGDAIEAVIA 125

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A+Y D G + A   + + W  R  +  +  RD KT LQEWA A+    P Y+   R GPD
Sbjct: 126 AVYQDAGFDAARALILRLWGDRVHEVEEDARDPKTALQEWAQARGLQPPRYEEVSRKGPD 185

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKR 209
           H P FT+ V IS     Q    SKR
Sbjct: 186 HAPIFTISVRISTGETDQATAGSKR 210


>gi|241761668|ref|ZP_04759755.1| Ribonuclease III [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|260754033|ref|YP_003226926.1| ribonuclease III [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|283856457|ref|YP_163110.2| ribonuclease III [Zymomonas mobilis subsp. mobilis ZM4]
 gi|292495068|sp|Q9Z5U2|RNC_ZYMMO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|241373976|gb|EER63509.1| Ribonuclease III [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|258553396|gb|ACV76342.1| ribonuclease III [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|283775461|gb|AAV89999.2| Ribonuclease III [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 246

 Score =  155 bits (391), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 78/202 (38%), Positives = 119/202 (58%), Gaps = 3/202 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S +EK +G+   + +L  +A+TH S  +S    Y+RLEFLGDR+LGL+I+  L++ F   
Sbjct: 31  SWIEKNLGHRPKDPALFLRAMTHPSHGNS---DYQRLEFLGDRVLGLVIANWLYDLFPRE 87

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+LS R NSLVS  +C+ +AR + L  ++R+    R D  +   ++  DV+E++I A+
Sbjct: 88  PEGKLSRRLNSLVSGASCASIARIVGLPQWLRLGKQARDDGAAASDNVLGDVMEAMIGAI 147

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           +L+ GIE AG  + KYW           +  K+ LQEWA A     P Y++  R+GP H+
Sbjct: 148 FLESGIEAAGKLIHKYWAPLVTGQESAPKHPKSALQEWAAAHNRRPPVYEIVSRTGPQHN 207

Query: 187 PRFTVVVEISGLAPAQGMDCSK 208
           P FT+ V I+G+  A     SK
Sbjct: 208 PCFTIQVSIAGVGEASAEGSSK 229


>gi|146278605|ref|YP_001168764.1| ribonuclease III [Rhodobacter sphaeroides ATCC 17025]
 gi|189043338|sp|A4WVP5|RNC_RHOS5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|145556846|gb|ABP71459.1| RNAse III [Rhodobacter sphaeroides ATCC 17025]
          Length = 229

 Score =  154 bits (390), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 84/204 (41%), Positives = 119/204 (58%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           E RIG+AF     L +A+TH+S+S + +   +RLEFLGDR+LGL+++  L     +A EG
Sbjct: 11  ESRIGHAFREPDRLLRAVTHASLSSATRPDNQRLEFLGDRVLGLVMAEALLAADKAATEG 70

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           +L+ RFN+LV  ETC+ VARE+ L   +++             ++  D +E++IAA+YLD
Sbjct: 71  QLAPRFNALVRKETCAAVAREVGLGDVLKLGRSEMMSGGRRKEALLGDALEAVIAAVYLD 130

Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
            G E A   V + W +R  +     RDAKT LQEWA A+    P Y+   RSGPDH P F
Sbjct: 131 AGFEAARRLVLRLWGERIAQVEADARDAKTALQEWAQARGLPPPCYEAVDRSGPDHAPIF 190

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQ 213
           TV V +      +    +KR AEQ
Sbjct: 191 TVEVRLGNGETERSAAGTKRVAEQ 214


>gi|295690019|ref|YP_003593712.1| ribonuclease III [Caulobacter segnis ATCC 21756]
 gi|295431922|gb|ADG11094.1| ribonuclease III [Caulobacter segnis ATCC 21756]
          Length = 231

 Score =  154 bits (390), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 92/203 (45%), Positives = 124/203 (61%), Gaps = 3/203 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE+RIG+ F +R LLE+ALTH+S+    ++    E LEF+GDR+LGLL +  L   F  A
Sbjct: 11  LERRIGHQFEDRELLERALTHASVGDGAKKVRDNEVLEFIGDRVLGLLAAEALAQRFPKA 70

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           KEGEL+ R N+LVS ETC++VAR  +L   +R+S+   K       SI A   E+L+AAL
Sbjct: 71  KEGELAPRLNALVSRETCARVARVAELGPALRLSASSSKIGGRETESILAGATEALMAAL 130

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           Y DGG++ A       W     ++G+ R RD KT LQEWA  K    P Y+V  R+GPDH
Sbjct: 131 YQDGGLDAARRVFLSLWADEFDRAGEGRPRDPKTALQEWAQGKGRPLPTYRVLDRTGPDH 190

Query: 186 DPRFTVVVEISGLAPAQGMDCSK 208
            P FTV V ++G+ PA     S+
Sbjct: 191 APVFTVEVVVAGVDPAMAKGKSR 213


>gi|312115946|ref|YP_004013542.1| ribonuclease III [Rhodomicrobium vannielii ATCC 17100]
 gi|311221075|gb|ADP72443.1| ribonuclease III [Rhodomicrobium vannielii ATCC 17100]
          Length = 236

 Score =  154 bits (389), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 96/222 (43%), Positives = 128/222 (57%), Gaps = 1/222 (0%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           R   LE  +GY F  R LL +ALTHSS  S       ERLEFLGDR+LGL I+ LLF  F
Sbjct: 7   RVEELEASLGYKFQERGLLAEALTHSSARSEKGGRDNERLEFLGDRVLGLSIAALLFERF 66

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A+E EL+  FN+LV   TC++VA +L+L   + ++    +        I AD VE+L+
Sbjct: 67  PKAREVELARHFNALVCKTTCAEVALKLELGPHLVMAPSEARSGGRKKDVILADAVEALL 126

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            A+ +DGG   A T V ++W+     S     DAKT LQE+A ++    P+Y    RSG 
Sbjct: 127 GAISVDGGFAAAETVVHRHWEPFIASSEPPAPDAKTALQEFAQSQKRGLPDYHEVERSGA 186

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           DH P FTV V + GL P +G   S + A+Q AA  +LKREG+
Sbjct: 187 DHAPNFTVEVRVQGLKPERGTGSSLKKAQQAAAEALLKREGV 228


>gi|144899862|emb|CAM76726.1| ribonuclease III [Magnetospirillum gryphiswaldense MSR-1]
          Length = 229

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 85/217 (39%), Positives = 116/217 (53%), Gaps = 4/217 (1%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLIS 56
           M A     L +R+G+ FA   LL +ALTH S++          YERLEFLGDR+LGL+++
Sbjct: 1   MDAGPIHDLCQRLGHEFAQSQLLTQALTHPSVAQGRAPRRNTPYERLEFLGDRVLGLVVA 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
            +LF+ F +  EG L+ R  +LV  E+ + VA ++ L   + +S            ++ A
Sbjct: 61  DMLFHRFPTEAEGALARRHAALVRRESLAVVAGQIGLPPCLTLSKGEEDAGGRGNPALLA 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D  E++I ALY D G EVA  FV   W      + +  +DAKT LQEWA       P Y 
Sbjct: 121 DACEAVIGALYADAGFEVAARFVRSAWTALMDAAAQPPKDAKTALQEWAQGLGKPLPVYT 180

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
           V  + GP HDP F V V + G+ P  G   SKR AEQ
Sbjct: 181 VVGQDGPPHDPTFVVSVTVEGVDPVHGTGASKRVAEQ 217


>gi|163793042|ref|ZP_02187018.1| SsrA-binding protein [alpha proteobacterium BAL199]
 gi|159181688|gb|EDP66200.1| SsrA-binding protein [alpha proteobacterium BAL199]
          Length = 227

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 85/215 (39%), Positives = 123/215 (57%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S L + +G+ F +  +L +A+TH+S       +YERLEFLGDR+L L ++  L + F   
Sbjct: 9   SHLAEVLGHTFNHPDILRRAVTHASAEPRAWNAYERLEFLGDRVLALAVAEQLLDRFPHE 68

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +EG ++ R  SLV  ET + VA  +DL  ++ VS            +I +D +E++IAAL
Sbjct: 69  REGAIAKRHVSLVRRETLADVAHTIDLGRYLIVSRGEDDAGARASDTILSDSMEAVIAAL 128

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           YLDGG+  A  F+ K+W        +  +D KT LQEWA  +    P Y    ++GP H 
Sbjct: 129 YLDGGLAAAQKFILKHWNPLLEMDHRPPQDPKTGLQEWAQGRRLPLPVYTTVEQTGPAHA 188

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           P FTV V + GLAP +    SKR AEQ+AAA +L+
Sbjct: 189 PEFTVEVVVEGLAPQRASGKSKRLAEQLAAAAMLE 223


>gi|77462220|ref|YP_351724.1| RNAse III [Rhodobacter sphaeroides 2.4.1]
 gi|126461082|ref|YP_001042196.1| ribonuclease III [Rhodobacter sphaeroides ATCC 17029]
 gi|221641174|ref|YP_002527436.1| Ribonuclease 3 [Rhodobacter sphaeroides KD131]
 gi|332560101|ref|ZP_08414423.1| ribonuclease III [Rhodobacter sphaeroides WS8N]
 gi|90101641|sp|Q3J5W1|RNC_RHOS4 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043337|sp|A3PGF8|RNC_RHOS1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807895|sp|B9KSA7|RNC_RHOSK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|77386638|gb|ABA77823.1| RNAse III [Rhodobacter sphaeroides 2.4.1]
 gi|126102746|gb|ABN75424.1| RNAse III [Rhodobacter sphaeroides ATCC 17029]
 gi|221161955|gb|ACM02935.1| Ribonuclease 3 [Rhodobacter sphaeroides KD131]
 gi|332277813|gb|EGJ23128.1| ribonuclease III [Rhodobacter sphaeroides WS8N]
          Length = 229

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 84/204 (41%), Positives = 117/204 (57%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           E RIG+ F     L +A+THSS+S   +   +RLEFLGDR+LGL+++  L     +A EG
Sbjct: 11  EGRIGHQFREPERLLRAVTHSSLSSVTRSDNQRLEFLGDRVLGLVMAEALLAADRAASEG 70

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           +L+ RFN+LV  ETC+ VARE+ L   +++             ++  D +E++IAA+YLD
Sbjct: 71  QLAPRFNALVRKETCAAVAREVALGDVLKLGRSEMMSGGRRKEALLGDALEAVIAAVYLD 130

Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
            G E A   V + W  R  +  +  RDAKT LQEWA A+    P Y+   RSGPDH P F
Sbjct: 131 AGFEAARQLVLRLWGARIAQVERDARDAKTALQEWAQARGLPPPTYEAVDRSGPDHAPIF 190

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQ 213
           TV V +      +    +KR AEQ
Sbjct: 191 TVEVRLGNGETDRAAAGTKRVAEQ 214


>gi|149200806|ref|ZP_01877781.1| Ribonuclease III [Roseovarius sp. TM1035]
 gi|149145139|gb|EDM33165.1| Ribonuclease III [Roseovarius sp. TM1035]
          Length = 227

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 76/186 (40%), Positives = 112/186 (60%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           + R+G+ F N +LL +ALTHSS++   ++  +RLEFLGDR+LGL+++  L +    A EG
Sbjct: 11  QARLGHEFTNAALLVRALTHSSMATPNRDDNQRLEFLGDRVLGLVMAEALLSQDQGATEG 70

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           +L+ RFN+LV  E C+ VARE+DL   +++             ++  D +E++IAA+YLD
Sbjct: 71  QLAPRFNALVRKEACADVAREIDLGGVLKLGRSEMLSGGRRKEALLGDAMEAVIAAVYLD 130

Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
            G E A   V + W  R     +  RDAKT LQEWA A+    P+Y    R GPDH P F
Sbjct: 131 AGFETARGVVLRLWGARLGAVKEDARDAKTSLQEWAQARGLPPPDYVELARKGPDHAPIF 190

Query: 190 TVVVEI 195
           T+  ++
Sbjct: 191 TICAQL 196


>gi|126726095|ref|ZP_01741937.1| ribonuclease III [Rhodobacterales bacterium HTCC2150]
 gi|126705299|gb|EBA04390.1| ribonuclease III [Rhodobacterales bacterium HTCC2150]
          Length = 228

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 80/183 (43%), Positives = 115/183 (62%), Gaps = 6/183 (3%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71
           RIG+ F+   LL +A+TH+SIS + +   +RLEFLGDRILGL+++  L N   SA EG L
Sbjct: 13  RIGHEFSKPELLVEAVTHASISSANRSDNQRLEFLGDRILGLVMAEALLNADTSANEGTL 72

Query: 72  SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF---MTSIQADVVESLIAALYL 128
           + RFN+LV  ETC+ VARE+DL + +++    R ++ S      ++  D +E++IAA+YL
Sbjct: 73  APRFNALVRKETCADVAREIDLGAVLKLG---RSEMISGGRRKLALLGDAMEAVIAAVYL 129

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           D G E A  F+ + W +R     +  RD K+ LQEWA A+    P YK+  R G DH P 
Sbjct: 130 DAGFEAARDFILRSWGERINAVDEDARDPKSSLQEWAQARKMPPPVYKLLRREGADHAPM 189

Query: 189 FTV 191
           FT+
Sbjct: 190 FTI 192


>gi|58584360|ref|YP_197933.1| dsRNA-specific ribonuclease [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
 gi|75498100|sp|Q5GTI3|RNC_WOLTR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|58418676|gb|AAW70691.1| dsRNA-specific ribonuclease [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
          Length = 243

 Score =  152 bits (385), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 84/219 (38%), Positives = 123/219 (56%), Gaps = 4/219 (1%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           T+ K I Y F N ++LE+ALTH S+    S +  E+YERLEFLGD IL +++S +LF  F
Sbjct: 17  TISKIINYRFKNDAILEEALTHPSLNKRNSKNQIENYERLEFLGDSILNMIVSAILFRLF 76

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
              KEG L+ R   LV   T + VA+E+ L +FI +++  R +          + +E+LI
Sbjct: 77  PKEKEGALARRKTDLVCGNTIANVAKEIKLGNFIIMNNSERCNGGKRNLKNLENALEALI 136

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            A+Y+DGG      FV K+W++RA       +D KT LQEW        PEY++  ++GP
Sbjct: 137 GAIYIDGGFANVKKFVTKHWEERAKGMLSLPQDPKTSLQEWTQKNKLPLPEYELMKQTGP 196

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            H P FT+ + I           SK+ AEQ AA  +L++
Sbjct: 197 AHSPEFTISICIENYGKVFACASSKKVAEQKAAELMLEK 235


>gi|99082399|ref|YP_614553.1| RNAse III [Ruegeria sp. TM1040]
 gi|99038679|gb|ABF65291.1| RNAse III [Ruegeria sp. TM1040]
          Length = 242

 Score =  152 bits (384), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 80/203 (39%), Positives = 121/203 (59%), Gaps = 6/203 (2%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           + R+G+ F++  LL +ALTH S+S   ++  +RLEFLGDR+LGL+++T L  H   A EG
Sbjct: 25  QARLGHEFSSPELLIRALTHPSVSSPNRQDNQRLEFLGDRVLGLVMATALLEHDKDATEG 84

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA---DVVESLIAAL 126
           +L+ RFN+LV  ETC+ VAR++DL + +++    R ++ S     QA   D +E++IAA+
Sbjct: 85  QLAPRFNALVRKETCADVARQIDLGAVLKLG---RSEMLSGGRRKQALLGDAMEAVIAAV 141

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           Y D G E A + + + W +R     +  RD KT LQE+  A+    P Y +  R GPDH+
Sbjct: 142 YRDAGFEAAQSVILRLWGKRVGTVEEDARDPKTALQEFVQARRQPPPAYVLVARKGPDHE 201

Query: 187 PRFTVVVEISGLAPAQGMDCSKR 209
           P FT+   +      Q    SKR
Sbjct: 202 PIFTIAARLEDGTEEQATAGSKR 224


>gi|103486701|ref|YP_616262.1| ribonuclease III [Sphingopyxis alaskensis RB2256]
 gi|123253313|sp|Q1GTU3|RNC_SPHAL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|98976778|gb|ABF52929.1| RNAse III [Sphingopyxis alaskensis RB2256]
          Length = 226

 Score =  152 bits (383), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 86/208 (41%), Positives = 119/208 (57%), Gaps = 7/208 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           L    L   IG    + +L + ALTH S   +    Y+RLEFLGDR+LGL++++ L+  F
Sbjct: 5   LNTEALADIIGCIPDDLTLYDLALTHGSTGRA---DYQRLEFLGDRVLGLVLASELYTRF 61

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            +A EGE+S R + L S  TC+ +A+ LDL + IR  +  R D      +I AD +E+LI
Sbjct: 62  PAASEGEMSSRLHVLASGATCAAIAQRLDLPALIRFGAQARSDGGRHSDNIAADAIEALI 121

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            AL+L+ GIE A TF+   W   AL  G+    +  K  LQEWA A+    PEY++  R 
Sbjct: 122 GALFLERGIEAARTFILAQWG--ALIDGQQAAPKHPKAALQEWALARGRRPPEYEIVSRE 179

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           GPDH PRF + V I  LA A+    SK+
Sbjct: 180 GPDHAPRFRIAVSIGKLARAEAQGASKQ 207


>gi|87199824|ref|YP_497081.1| ribonuclease III [Novosphingobium aromaticivorans DSM 12444]
 gi|87135505|gb|ABD26247.1| RNAse III [Novosphingobium aromaticivorans DSM 12444]
          Length = 252

 Score =  151 bits (381), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 88/203 (43%), Positives = 114/203 (56%), Gaps = 3/203 (1%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           G A A   +  +ALTH S+       Y+RLEFLGDR+LGL I+  L    D+A EG+LS 
Sbjct: 45  GAAPARPEIWAEALTHGSMGEP--RDYQRLEFLGDRVLGLAIADWLHEKSDAA-EGKLSQ 101

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           R N+LVS ETC+ VAR + LA  IR+    R D  +   +I  DV+E+LI AL+++ G E
Sbjct: 102 RLNALVSRETCADVARTIGLAGHIRLGKQARDDGGAQSDNILGDVMEALIGALFVERGFE 161

Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
            A  FV K W++  L     R+  K  LQEWA       P Y +  R GPDH   FTV V
Sbjct: 162 AARKFVRKAWEKPMLSGTGQRKHPKAALQEWAAGNRRKPPVYTLVSREGPDHAATFTVSV 221

Query: 194 EISGLAPAQGMDCSKRAAEQVAA 216
           E+ G+  A     SK+ AE  AA
Sbjct: 222 EVKGVGEASARGSSKQEAETAAA 244


>gi|254511570|ref|ZP_05123637.1| ribonuclease III [Rhodobacteraceae bacterium KLH11]
 gi|221535281|gb|EEE38269.1| ribonuclease III [Rhodobacteraceae bacterium KLH11]
          Length = 225

 Score =  151 bits (381), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 82/202 (40%), Positives = 117/202 (57%), Gaps = 6/202 (2%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           ++R+GY F++  LL ++LTH S+S S +   +RLEFLGDR+LGL+++T L      A EG
Sbjct: 11  QQRLGYEFSDPELLVRSLTHGSVSSSTRPDNQRLEFLGDRVLGLVMATALLEADKKASEG 70

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA---DVVESLIAAL 126
           +L+ RFN+LV  E C+ VAR++DL + +++    R ++ S     QA   D +E++IAA+
Sbjct: 71  QLAPRFNALVRKEACADVARQIDLGAVLKLG---RSEMLSGGRRKQALLGDAMEAVIAAI 127

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           Y D G E A   +   W  R        RDAKT LQEWA A+    P Y    R+GPDH 
Sbjct: 128 YRDAGFEAARDVILALWGDRIHMVEADARDAKTSLQEWAQARGQKPPAYVEVKRTGPDHA 187

Query: 187 PRFTVVVEISGLAPAQGMDCSK 208
           P FT+   +     AQ    SK
Sbjct: 188 PVFTIAARLQDGTEAQATAGSK 209


>gi|149913470|ref|ZP_01902003.1| 4'-phosphopantetheinyl transferase [Roseobacter sp. AzwK-3b]
 gi|149812590|gb|EDM72419.1| 4'-phosphopantetheinyl transferase [Roseobacter sp. AzwK-3b]
          Length = 227

 Score =  150 bits (380), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 80/185 (43%), Positives = 116/185 (62%), Gaps = 6/185 (3%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           E+R+G+ F   +LL +A+THSS++   ++  +RLEFLGDR+LGL+++  L     SA+EG
Sbjct: 11  EERLGHRFEQSALLVRAVTHSSMASPTRDDNQRLEFLGDRVLGLVMAEALLERDRSAEEG 70

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA---DVVESLIAAL 126
            L+ RFN+LV  E C+ VARE+ L   +++    R ++ S     QA   D +E++IAA+
Sbjct: 71  LLAPRFNALVRKEACADVAREIALGDVLKLG---RSEMLSGGRRKQALLGDAMEAVIAAV 127

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           Y D G +VA   V + W +R     +  RDAKT LQEWA A+    P Y  T RSGPDH 
Sbjct: 128 YRDAGFDVAKAVVLRLWGKRIDSVKEDARDAKTALQEWAQARGQTPPAYVETARSGPDHA 187

Query: 187 PRFTV 191
           P+FT+
Sbjct: 188 PQFTI 192


>gi|126728500|ref|ZP_01744316.1| Ribonuclease III [Sagittula stellata E-37]
 gi|126711465|gb|EBA10515.1| Ribonuclease III [Sagittula stellata E-37]
          Length = 225

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 73/183 (39%), Positives = 113/183 (61%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE ++G+ F +++LL +A+TH+S+S   +E  +RLEFLGDR+LGL+++  L  H  +A E
Sbjct: 10  LEDKLGHTFRDKALLRRAVTHASMSGPGREDNQRLEFLGDRVLGLVMAEALLAHDRNASE 69

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G L+ RFN+LV  ETC++VAR + +   +++    +        ++  D +E++IAA+YL
Sbjct: 70  GLLAPRFNALVRKETCAEVARTIGVGDALKLGRSEQMSGGRRKQALLGDAMEAVIAAVYL 129

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           DGG +VA   + + W        +  +DAKT LQEWA  +    P Y    RSGPDH P 
Sbjct: 130 DGGFDVAQDMILRLWAPLIASVEEDAKDAKTTLQEWAQGRGMTPPSYTEVERSGPDHAPV 189

Query: 189 FTV 191
           FT+
Sbjct: 190 FTI 192


>gi|83311357|ref|YP_421621.1| dsRNA-specific ribonuclease [Magnetospirillum magneticum AMB-1]
 gi|82946198|dbj|BAE51062.1| dsRNA-specific ribonuclease [Magnetospirillum magneticum AMB-1]
          Length = 228

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 82/214 (38%), Positives = 121/214 (56%), Gaps = 4/214 (1%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +G+AFA   LL +ALTH S+    +    + YERLEFLGDR+LGL+++ +LF+ F +  E
Sbjct: 12  LGHAFARPELLAQALTHPSMHQGRKSRTSDPYERLEFLGDRVLGLVVAEMLFSRFPNEAE 71

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G L+ R  +LV  E  +++A E+ L   + ++             I AD  E++I ALY 
Sbjct: 72  GALARRHAALVRREAVARIATEIGLGRCLVLAKGEDDAGGRANPGILADACEAVIGALYA 131

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           D G  VA +FV   W+    ++    +DAKT LQEWA  +    P Y+V  + GP H+P 
Sbjct: 132 DAGFAVAASFVRSRWEPMMEEALAPPKDAKTGLQEWAQGRGKPLPHYQVLGQEGPPHEPI 191

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           F + V + G+  A G   SKR AEQ AA  +L++
Sbjct: 192 FLIEVSVEGVGSAVGRGASKRVAEQAAAGLLLEQ 225


>gi|86135727|ref|ZP_01054306.1| ribonuclease III [Roseobacter sp. MED193]
 gi|85826601|gb|EAQ46797.1| ribonuclease III [Roseobacter sp. MED193]
          Length = 222

 Score =  150 bits (379), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 78/200 (39%), Positives = 114/200 (57%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           E+RIG+ F    LL +ALTH S+S   ++  +RLEFLGDR+LGL+++T L +H   A EG
Sbjct: 5   EQRIGHQFVRPELLVRALTHPSVSSPNRKDNQRLEFLGDRVLGLVMATALLDHDKDASEG 64

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           +L+ RFN+LV  E C+ VARE++L   +++             ++  D +E++IAA+Y D
Sbjct: 65  QLAPRFNALVRKEACADVAREIELGEVLKLGRSEMMSGGRRKLALLGDGMEAVIAAVYKD 124

Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
            G EVA   + + W  R  +     RD KT LQE+  A+    P Y    R+GPDH P F
Sbjct: 125 AGFEVAQAMILRLWGARIHQVEADARDPKTALQEYVQARRQNPPAYVQVARTGPDHQPIF 184

Query: 190 TVVVEISGLAPAQGMDCSKR 209
           T+ V +      +    SKR
Sbjct: 185 TIAVRLEDGTEERATAGSKR 204


>gi|259417917|ref|ZP_05741836.1| ribonuclease III [Silicibacter sp. TrichCH4B]
 gi|259346823|gb|EEW58637.1| ribonuclease III [Silicibacter sp. TrichCH4B]
          Length = 228

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 79/203 (38%), Positives = 119/203 (58%), Gaps = 6/203 (2%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           + R+G+ F++  LL +ALTH S+S   ++  +RLEFLGDR+LGL+++T L  H   A EG
Sbjct: 11  QARLGHEFSSPELLIRALTHPSVSSPNRQDNQRLEFLGDRVLGLVMATALLEHDKHATEG 70

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA---DVVESLIAAL 126
           +L+ RFN+LV  E C+ VAR++DL + +++    R ++ S     QA   D +E++IAA+
Sbjct: 71  QLAPRFNALVRKEACADVARQIDLGAVLKLG---RSEMLSGGRRKQALLGDAMEAVIAAV 127

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           Y D G E A   + + W +R        RD KT LQE+  A+    P Y +  R+GPDH+
Sbjct: 128 YKDAGFEAAQNVILRLWGKRVGTVEDDARDPKTALQEFVQARRQPPPAYVLIARTGPDHE 187

Query: 187 PRFTVVVEISGLAPAQGMDCSKR 209
           P FT+   +      Q    SKR
Sbjct: 188 PVFTIAARLEDGTEEQATAGSKR 210


>gi|73667460|ref|YP_303476.1| ribonuclease III [Ehrlichia canis str. Jake]
 gi|90101626|sp|Q3YQX7|RNC_EHRCJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|72394601|gb|AAZ68878.1| RNAse III [Ehrlichia canis str. Jake]
          Length = 226

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 85/217 (39%), Positives = 122/217 (56%), Gaps = 2/217 (0%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           T+ K I Y F N  LL +ALTH SI    S + +YERLEFLGD +L ++IS +LFN F  
Sbjct: 4   TISKTIKYHFKNPQLLHEALTHPSIISKDSLKFNYERLEFLGDAVLNIVISEMLFNIFPK 63

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG L+ +  +LV      +VA+ ++L  FI +S   R    +   +   + +E+LI A
Sbjct: 64  DTEGNLAKKKTALVCGNQLVKVAQSINLGQFIIMSDGERTCGGANNHNNLENALEALIGA 123

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           +YLDGG+  A  F+  +WK  A+      +DAKT LQE+   K    P Y +  +SGPDH
Sbjct: 124 IYLDGGLTAAQNFIHSFWKHTAIHMDIPPQDAKTILQEFIQGKRLPAPTYHIIDKSGPDH 183

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +P FTV + I      Q    +K+ AEQ AA+ +L +
Sbjct: 184 NPIFTVELRIPLYKTIQATGNNKKLAEQKAASLMLNQ 220


>gi|149186754|ref|ZP_01865065.1| ribonuclease III [Erythrobacter sp. SD-21]
 gi|148829662|gb|EDL48102.1| ribonuclease III [Erythrobacter sp. SD-21]
          Length = 223

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/227 (40%), Positives = 132/227 (58%), Gaps = 7/227 (3%)

Query: 1   MSALRYSTLE--KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58
           MSAL   T E  ++ G+   N +L + ALTH S+    ++ YERLEFLGDR+LGL I+  
Sbjct: 1   MSALEPDTREWLEKTGFTVNNEALWQAALTHGSMGE--KDDYERLEFLGDRVLGLSIAHW 58

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L+   D A EG+L+ R N++VS E C+ VAR ++L+  +R+S   R D      +I  DV
Sbjct: 59  LYEQSD-APEGKLAQRLNAIVSREMCAIVARGIELSEHMRISKQARADGGKDSDNILGDV 117

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKV 177
           +E+L+ A +LD G + +   V   W+  AL+SG    +  K+ LQEWA       PEY+V
Sbjct: 118 MEALLGAQFLDNGFKKSRELVHVLWRP-ALESGAGESKHPKSALQEWAAGNRRKPPEYEV 176

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             RSGPDH  +FTV V +  +  A     SK  AE+ AA + +++ G
Sbjct: 177 VERSGPDHAAQFTVKVSVHKVGEATATAGSKGEAERAAAKKFMEKFG 223


>gi|91201952|emb|CAJ75012.1| similar to ribonuclease III [Candidatus Kuenenia stuttgartiensis]
          Length = 236

 Score =  149 bits (376), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 87/211 (41%), Positives = 124/211 (58%), Gaps = 3/211 (1%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           IGY+F    LLEKALTH+S       S ERLEFLGD +LG++IS  L+       EGEL+
Sbjct: 20  IGYSFKKMLLLEKALTHTSCRVENNFSNERLEFLGDAVLGMIISDYLYKTMPHYSEGELT 79

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
              + +VS  T ++V  E  L  F+ V   L  D   F  S+ A+V E+LIAA+Y+DGGI
Sbjct: 80  NVKSVVVSQSTLAKVGMEAGLKEFLLVGRGLN-DRDLFPKSLLANVFEALIAAIYIDGGI 138

Query: 133 EVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           E A  F  +Y K+    +   + +++ K+ LQ+++  ++G+TP Y++  + GPDH   F 
Sbjct: 139 EAASEFTLRYLKKEIDLVCKNQHKKNYKSILQQYSQKEYGITPTYRLLQQIGPDHGKSFE 198

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +VV I G    +G   SK+ AEQ AA E LK
Sbjct: 199 IVVSIKGSEYGRGWGKSKKEAEQSAAKEALK 229


>gi|99035124|ref|ZP_01314908.1| hypothetical protein Wendoof_01000254 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 234

 Score =  149 bits (375), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 83/220 (37%), Positives = 123/220 (55%), Gaps = 4/220 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           + K I Y F N ++LE+ALTH S++    +    SYERLEFLGD +L +++S  LF  F 
Sbjct: 10  ISKIIDYKFTNYAILEEALTHPSVNKRNSKNQIVSYERLEFLGDSVLNMVVSATLFKLFP 69

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             KEG L+ R   LV   T + VA+E+ L SFI +++  R +          + +E+LI 
Sbjct: 70  EEKEGALAKRKTDLVCGNTIANVAKEIKLGSFIIMNNSERCNGGRCNLKNLENSLEALIG 129

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A+Y+DGG+E    F+ +YW++ A       +D KT LQEW        PEY++  ++GP 
Sbjct: 130 AIYIDGGLENVEKFIIQYWEKLAKGMLDPPQDPKTSLQEWTQKNKLPLPEYELVKQTGPA 189

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           H+P FT+ V I           SK+ AEQ AA  +L++ G
Sbjct: 190 HNPEFTISVCIEDYGKVSACASSKKIAEQKAAELMLEKIG 229


>gi|42521037|ref|NP_966952.1| ribonuclease III, putative [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|225630900|ref|YP_002727691.1| ribonuclease III, putative [Wolbachia sp. wRi]
 gi|225677311|ref|ZP_03788288.1| ribonuclease III, putative [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|81652137|sp|Q73FT3|RNC_WOLPM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807910|sp|C0R4Q8|RNC_WOLWR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|42410778|gb|AAS14886.1| ribonuclease III, putative [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|225590638|gb|EEH11888.1| ribonuclease III, putative [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225592881|gb|ACN95900.1| ribonuclease III, putative [Wolbachia sp. wRi]
          Length = 232

 Score =  148 bits (374), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 83/220 (37%), Positives = 123/220 (55%), Gaps = 4/220 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           + K I Y F N ++LE+ALTH S++    +    SYERLEFLGD +L +++S  LF  F 
Sbjct: 8   ISKIIDYKFTNYAILEEALTHPSVNKRNSKNQIVSYERLEFLGDSVLNMVVSATLFKLFP 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             KEG L+ R   LV   T + VA+E+ L SFI +++  R +          + +E+LI 
Sbjct: 68  EEKEGALAKRKTDLVCGNTIANVAKEIKLGSFIIMNNSERCNGGRCNLKNLENSLEALIG 127

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A+Y+DGG+E    F+ +YW++ A       +D KT LQEW        PEY++  ++GP 
Sbjct: 128 AIYIDGGLENVEKFIIQYWEKLAKGMLDPPQDPKTSLQEWTQKNKLPLPEYELVKQTGPA 187

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           H+P FT+ V I           SK+ AEQ AA  +L++ G
Sbjct: 188 HNPEFTISVCIEDYGKVSACASSKKIAEQKAAELMLEKIG 227


>gi|57239534|ref|YP_180670.1| ribonuclease III [Ehrlichia ruminantium str. Welgevonden]
 gi|58579518|ref|YP_197730.1| ribonuclease III [Ehrlichia ruminantium str. Welgevonden]
 gi|81352757|sp|Q5HA74|RNC_EHRRW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|57161613|emb|CAH58541.1| ribonuclease III [Ehrlichia ruminantium str. Welgevonden]
 gi|58418144|emb|CAI27348.1| Ribonuclease III [Ehrlichia ruminantium str. Welgevonden]
          Length = 227

 Score =  148 bits (374), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 84/218 (38%), Positives = 124/218 (56%), Gaps = 2/218 (0%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           + + K I Y F N  LL +ALTH S+    +   +YERLEFLGD +L L+IS +LFN F 
Sbjct: 4   NAISKIIKYDFKNTQLLNEALTHPSVLSKDNNNFNYERLEFLGDAVLNLVISEMLFNIFP 63

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG L+ +  +LV      ++A+ ++L  FI +S   R    +  ++   + +E+LI 
Sbjct: 64  YDTEGNLAKKKTALVCGTKLVEIAQSINLGIFIIMSDGERSCGGANNSNNLENALEALIG 123

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A+YLDGG++ A  F+  +WK  A       +DAKT LQEWA +K    P Y +  +SGPD
Sbjct: 124 AIYLDGGLKAAKDFIFLFWKNSATHMKVPPQDAKTILQEWAQSKGFPAPSYHIINKSGPD 183

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           H+P FTV V I+          +K+ AEQ AA+ +L +
Sbjct: 184 HNPCFTVEVRINSHETLHATGHNKKLAEQKAASLMLAK 221


>gi|213018872|ref|ZP_03334680.1| ribonuclease III [Wolbachia endosymbiont of Culex quinquefasciatus
           JHB]
 gi|212995823|gb|EEB56463.1| ribonuclease III [Wolbachia endosymbiont of Culex quinquefasciatus
           JHB]
          Length = 233

 Score =  148 bits (374), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 80/219 (36%), Positives = 125/219 (57%), Gaps = 4/219 (1%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHF 63
           T+ K I Y F + ++LE+ALTH S++    E    SYERLEFLGD +L +++S +LF  F
Sbjct: 10  TISKVINYKFTDYAILEEALTHPSVNKRNSEDQVVSYERLEFLGDSVLNMVVSVMLFKMF 69

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
              KEG L+ R   LV   T + VA+E++L +FI +++  R +          + +E+LI
Sbjct: 70  PEEKEGALAKRKTDLVCGSTIANVAKEIELGNFIIMNNSERCNGGKCNLKNLENSLEALI 129

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            A+Y+DGG+E    F+ ++W++ A       +D KT LQEW        P+Y++  ++GP
Sbjct: 130 GAIYIDGGLESVEKFIIRHWEKLAKDILDPPQDPKTSLQEWTQRNKLPLPKYELVKQTGP 189

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            H+P FT+ V I           SK+ AEQ AA  +L++
Sbjct: 190 AHNPEFTISVCIESYDKVSACAPSKKIAEQKAAELILEK 228


>gi|190571469|ref|YP_001975827.1| ribonuclease III [Wolbachia endosymbiont of Culex quinquefasciatus
           Pel]
 gi|238056573|sp|B3CMS0|RNC_WOLPP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|190357741|emb|CAQ55192.1| ribonuclease III [Wolbachia endosymbiont of Culex quinquefasciatus
           Pel]
          Length = 230

 Score =  148 bits (374), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 80/219 (36%), Positives = 125/219 (57%), Gaps = 4/219 (1%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHF 63
           T+ K I Y F + ++LE+ALTH S++    E    SYERLEFLGD +L +++S +LF  F
Sbjct: 7   TISKVINYKFTDYAILEEALTHPSVNKRNSEDQVVSYERLEFLGDSVLNMVVSVMLFKMF 66

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
              KEG L+ R   LV   T + VA+E++L +FI +++  R +          + +E+LI
Sbjct: 67  PEEKEGALAKRKTDLVCGSTIANVAKEIELGNFIIMNNSERCNGGKCNLKNLENSLEALI 126

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            A+Y+DGG+E    F+ ++W++ A       +D KT LQEW        P+Y++  ++GP
Sbjct: 127 GAIYIDGGLESVEKFIIRHWEKLAKDILDPPQDPKTSLQEWTQRNKLPLPKYELVKQTGP 186

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            H+P FT+ V I           SK+ AEQ AA  +L++
Sbjct: 187 AHNPEFTISVCIESYDKVSACAPSKKIAEQKAAELILEK 225


>gi|4378851|gb|AAD19719.1| ribonuclease III [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 222

 Score =  148 bits (373), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 74/190 (38%), Positives = 112/190 (58%), Gaps = 3/190 (1%)

Query: 19  NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           + +L  +A+TH S  +S    Y+RLEFLGDR+LGL+I+  L++ F    EG+LS R NSL
Sbjct: 19  DPALFLRAMTHPSHGNS---DYQRLEFLGDRVLGLVIANWLYDLFPREPEGKLSRRLNSL 75

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138
           VS  +C+ +AR + L  ++R+    R D  +   ++  DV+E++I A++L+ GIE AG  
Sbjct: 76  VSGASCASIARIVGLPQWLRLGKQARDDGAAASDNVLGDVMEAMIGAIFLESGIEAAGKL 135

Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
           + KYW           +  K+ LQEWA A     P Y++  R+GP H+P FT+ V I+G+
Sbjct: 136 IHKYWAPLVTGQESAPKHPKSALQEWAAAHNRRPPVYEIVSRTGPQHNPCFTIQVSIAGV 195

Query: 199 APAQGMDCSK 208
             A     SK
Sbjct: 196 GEASAEGSSK 205


>gi|58698421|ref|ZP_00373332.1| ribonuclease III [Wolbachia endosymbiont of Drosophila ananassae]
 gi|58535076|gb|EAL59164.1| ribonuclease III [Wolbachia endosymbiont of Drosophila ananassae]
          Length = 232

 Score =  147 bits (372), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 82/218 (37%), Positives = 122/218 (55%), Gaps = 4/218 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           + K I Y F N ++LE+ALTH S++    +    SYERLEFLGD +L +++S  LF  F 
Sbjct: 8   ISKIIDYKFTNYAILEEALTHPSVNKRNSKNQIVSYERLEFLGDSVLNMVVSATLFKLFP 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             KEG L+ R   LV   T + VA+E+ L SFI +++  R +          + +E+LI 
Sbjct: 68  EEKEGALAKRKTDLVCGNTIANVAKEIKLGSFIIMNNSERCNGGRCNLKNLENSLEALIG 127

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A+Y+DGG+E    F+ +YW++ A       +D KT LQEW        PEY++  ++GP 
Sbjct: 128 AIYIDGGLENVEKFIIQYWEKLAKGMLDPPQDPKTSLQEWTQKNKLPLPEYELVKQTGPA 187

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           H+P FT+ V I           SK+ AEQ AA  +L++
Sbjct: 188 HNPEFTISVCIEDYGKVSACASSKKIAEQKAAELMLEK 225


>gi|58617572|ref|YP_196771.1| ribonuclease III [Ehrlichia ruminantium str. Gardel]
 gi|75432734|sp|Q5FGH0|RNC_EHRRG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|58417184|emb|CAI28297.1| Ribonuclease III [Ehrlichia ruminantium str. Gardel]
          Length = 227

 Score =  147 bits (372), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 83/218 (38%), Positives = 124/218 (56%), Gaps = 2/218 (0%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           + + K I Y F N  LL +ALTH S+    +   +YERLEFLGD +L L++S +LFN F 
Sbjct: 4   NAISKIIKYDFKNTQLLNEALTHPSVLSKDNNNFNYERLEFLGDAVLNLVVSEMLFNIFP 63

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG L+ +  +LV      ++A+ ++L  FI +S   R    +  ++   + +E+LI 
Sbjct: 64  YDTEGNLAKKKTALVCGTKLVEIAQSINLGIFIIMSDGERSCGGANNSNNLENALEALIG 123

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A+YLDGG++ A  F+  +WK  A       +DAKT LQEWA +K    P Y +  +SGPD
Sbjct: 124 AIYLDGGLKAAKDFIFLFWKNSATHMKVPPQDAKTILQEWAQSKGFPAPSYHIINKSGPD 183

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           H+P FTV V I+          +K+ AEQ AA+ +L +
Sbjct: 184 HNPCFTVEVRINSHETLHATGHNKKLAEQKAASLMLAK 221


>gi|326402425|ref|YP_004282506.1| ribonuclease III [Acidiphilium multivorum AIU301]
 gi|325049286|dbj|BAJ79624.1| ribonuclease III [Acidiphilium multivorum AIU301]
          Length = 221

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 85/215 (39%), Positives = 127/215 (59%), Gaps = 3/215 (1%)

Query: 10  EKRIGYAFANRSLLEKALTH-SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           E  +G+ FA   LL +ALTH S++      S ERLEF+GDR+LGLLI+  L   F   +E
Sbjct: 6   EALLGHRFARPDLLAQALTHRSAVGQGGLGSNERLEFIGDRVLGLLIAEWLIERFPHERE 65

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G L  R   LVS ++ +++A    +A  + VS    +       ++ AD +E+LI ALYL
Sbjct: 66  GGLGPRLAHLVSRQSLAEIAEHGGIAGLLSVSPGESRRGVRNRATVLADALEALIGALYL 125

Query: 129 DGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           DGG+E A  F+ + +  R   +     +D KT LQE+A A+  V P Y++  R+GP H P
Sbjct: 126 DGGLEPARLFIRRIFAPRIDGQPSAPPKDPKTALQEYALARGPVLPAYELVERTGPSHAP 185

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           RF + V ++G A A+G+  +KR AEQ AA ++L++
Sbjct: 186 RFRIRVTVAGRA-AEGLAGTKREAEQNAARDLLEQ 219


>gi|254455346|ref|ZP_05068775.1| ribonuclease III [Candidatus Pelagibacter sp. HTCC7211]
 gi|207082348|gb|EDZ59774.1| ribonuclease III [Candidatus Pelagibacter sp. HTCC7211]
          Length = 220

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 84/218 (38%), Positives = 122/218 (55%), Gaps = 3/218 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y +LEK+I   F N +LL ++LTH S  H+  ++ E++EFLGDR+LGL+I+  L   + 
Sbjct: 4   NYQSLEKKINIKFKNTNLLIQSLTHKS--HNSLKNNEKIEFLGDRVLGLVIAKKLLEIYP 61

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             KEG L  +F SLV+  TC ++A+ ++L  +I ++ +L          I +D  E+LI 
Sbjct: 62  DEKEGILDKKFASLVNKRTCLEIAKNINLEKYI-LTFNLNNKKIKIEDKIISDCCEALIG 120

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           ALYLD G+ +    +   WK    KS   + DAKT+LQE A   F   P YK+   +GP 
Sbjct: 121 ALYLDKGLNITEKIILDLWKNHIKKSVVTQIDAKTKLQELALKNFKKLPIYKLISNTGPR 180

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           H P F V V++        +  SK+ AEQ AA E LK 
Sbjct: 181 HKPLFKVGVKLPNTKYFIALGKSKKDAEQNAAIECLKN 218


>gi|330993372|ref|ZP_08317307.1| Ribonuclease 3 [Gluconacetobacter sp. SXCC-1]
 gi|329759402|gb|EGG75911.1| Ribonuclease 3 [Gluconacetobacter sp. SXCC-1]
          Length = 258

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 85/230 (36%), Positives = 123/230 (53%), Gaps = 15/230 (6%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE--------------SYERLEFLGDRILGLL 54
           LE  +GY F    LL +ALTH S +H                  S ERLEF+GDR+LGL+
Sbjct: 14  LEACLGYHFTRPELLLRALTHRSAAHERSGNRRTRQNVATRGAGSNERLEFIGDRVLGLV 73

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
           ++  L   F + +EG L  R   LVS    ++VA  + L S + V+    +     M ++
Sbjct: 74  MAEWLLERFPTEQEGALGPRHAHLVSRTVLAEVAHAMALQSALDVAEHEARAGVRQMANV 133

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174
            AD VE+++ A+YLDGG++ A  FV + W+   +   +  +D KT LQEW   +    P 
Sbjct: 134 LADAVEAILGAIYLDGGLDPARAFVRRMWQDAIVAQARPPKDPKTALQEWVLGRGLPLPR 193

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           Y+V    GP H PRF + V+  G    QG+  SKRAAE  AAA++L++ G
Sbjct: 194 YRVVSAEGPSHAPRFVIAVDAQGKT-GQGVAGSKRAAESDAAADLLRQLG 242


>gi|111073612|emb|CAL29457.1| Ribonuclease III [Wolbachia endosymbiont of Onchocerca volvulus]
          Length = 243

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 81/213 (38%), Positives = 118/213 (55%), Gaps = 4/213 (1%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           T+ + I Y F N S+L++ALTH S+    S +  E+YERLEFLGD IL +++ST+LF  F
Sbjct: 15  TISEIINYRFKNYSILKEALTHPSLNKRNSKNQIENYERLEFLGDSILNMVVSTILFKLF 74

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
              KEG L+ R   LV   T + VA+ + L  FI + +  R +   +      + +E+LI
Sbjct: 75  PKEKEGRLAKRKTDLVCGSTIANVAKVIKLGDFIIMDNSERCNGGKYNLKNLENALEALI 134

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            A+Y+DGG      FV +YW++ A       +D KT LQEW        P+Y++  ++GP
Sbjct: 135 GAIYIDGGFRNVERFVTQYWEKLAKYMLNPPQDPKTSLQEWTQKNKLPLPKYELKKQTGP 194

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            H+P FT+ V I           SK+ AEQ AA
Sbjct: 195 AHNPEFTISVYIKNYGRVSACASSKKVAEQKAA 227


>gi|288958023|ref|YP_003448364.1| ribonuclease III [Azospirillum sp. B510]
 gi|288910331|dbj|BAI71820.1| ribonuclease III [Azospirillum sp. B510]
          Length = 261

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 81/227 (35%), Positives = 128/227 (56%), Gaps = 10/227 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSI---------SHSYQE-SYERLEFLGDRILGLLISTL 58
           L + +G+ F+N +LL  A+TH S+          H     +YERLEFLGDR++GL+++  
Sbjct: 31  LARALGHEFSNPTLLCDAVTHPSLMGLERTGRKGHKGPGIAYERLEFLGDRVVGLVVAQW 90

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L   +   +EG L+ R  +LV  E+  +VA  + L +++R+S    +       +I  D 
Sbjct: 91  LLERYPDEREGALAKRHAALVRRESLGRVADAIGLGAYLRLSPAEAQSGGRENRTILGDA 150

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
            E+++ A+YLDGG+E    FV +       K+     D+KT LQEWA  +    P Y++T
Sbjct: 151 CEAVLGAMYLDGGLEPVTRFVRQALAGEIDKATPPPLDSKTTLQEWAQGRGKPLPRYELT 210

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            RSGP H+P F V V ++G+ P  G   SKR AE+ AA+ +L++ G+
Sbjct: 211 ERSGPAHEPLFVVAVHVAGMDPVSGSGSSKRIAEKKAASALLRQVGV 257


>gi|209964796|ref|YP_002297711.1| ribonuclease III [Rhodospirillum centenum SW]
 gi|209958262|gb|ACI98898.1| ribonuclease III [Rhodospirillum centenum SW]
          Length = 236

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/219 (40%), Positives = 119/219 (54%), Gaps = 3/219 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSS---ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           S LE  +GY F +R LL +ALTH S   +  +    YERLEFLGDR+LGL+I+  L   F
Sbjct: 12  SELETGLGYHFRHRDLLVQALTHPSLGGVERNAGRGYERLEFLGDRVLGLVIAEWLLERF 71

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            +  EG L+ R  +LV AE  + VA  + L  F+R++   R        +I AD  E++I
Sbjct: 72  PAEAEGALARRHTALVRAEALTVVAETIGLGPFLRLAPSERDSGGQAKPAILADACEAVI 131

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            A++ DGG+E A T +   W           +D KT LQEWA  +    P Y+   R GP
Sbjct: 132 GAIFQDGGLEPARTLIRTRWTPLIEADLSPPQDPKTALQEWALGRGRPLPAYETLSREGP 191

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           DH P F V V + G  PA     SKRAAE+ AA  +L++
Sbjct: 192 DHAPVFRVRVRVEGAEPATATGPSKRAAEKAAAEALLRQ 230


>gi|260576288|ref|ZP_05844280.1| ribonuclease III [Rhodobacter sp. SW2]
 gi|259021556|gb|EEW24860.1| ribonuclease III [Rhodobacter sp. SW2]
          Length = 231

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 81/190 (42%), Positives = 110/190 (57%), Gaps = 12/190 (6%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71
           RIG+ F    LL +A+THSSIS   +   +RLEFLGDR+LGL+++  L     +A EG+L
Sbjct: 13  RIGHVFRQPELLLRAVTHSSISSKTRPDNQRLEFLGDRVLGLVMAEALLTADTAASEGQL 72

Query: 72  SVRFNSLVSAETCSQVARELDLASFIR------VSSDLRKDVCSFMTSIQADVVESLIAA 125
           + RFN+LV  E C+ VAR+L L   ++      +S   RKD      ++  D +E++IAA
Sbjct: 73  APRFNALVRKEACADVARDLGLGEVMKLGRSEMMSGGRRKD------ALLGDALEAVIAA 126

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           +YLD G + A   V + W  R        RDAKT LQEWA A+    P Y    R GPDH
Sbjct: 127 VYLDSGFDAARGLVLRLWGGRIGAVQSDARDAKTSLQEWAQARGLPPPAYIELGRDGPDH 186

Query: 186 DPRFTVVVEI 195
            P+FTV V +
Sbjct: 187 QPQFTVEVRL 196


>gi|148259270|ref|YP_001233397.1| ribonuclease III [Acidiphilium cryptum JF-5]
 gi|146400951|gb|ABQ29478.1| RNAse III [Acidiphilium cryptum JF-5]
          Length = 221

 Score =  145 bits (366), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 84/215 (39%), Positives = 126/215 (58%), Gaps = 3/215 (1%)

Query: 10  EKRIGYAFANRSLLEKALTH-SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           E  +G+ FA   LL +ALTH S++      S ERLEF+GDR+LGLLI+  L   F   +E
Sbjct: 6   EALLGHRFARPDLLAQALTHRSAVGQGGLGSNERLEFIGDRVLGLLIAEWLIERFPHERE 65

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G L  R   LVS ++ +++A    +A  + VS    +       ++ AD +E+LI ALYL
Sbjct: 66  GGLGPRLAHLVSRQSLAEIAEHGGIAGLLSVSPGESRRGVRNRATVLADALEALIGALYL 125

Query: 129 DGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           DGG+E A  F+ + +  R   +     +D KT LQE+A A+  V P Y++  R+GP H P
Sbjct: 126 DGGLEPARLFIRRIFAPRIDGQPSAPPKDPKTALQEYALARGPVLPAYELVERTGPSHAP 185

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           RF + V ++G   A+G+  +KR AEQ AA ++L++
Sbjct: 186 RFRIRVTVAGRT-AEGLAGTKREAEQNAARDLLEQ 219


>gi|83593187|ref|YP_426939.1| RNAse III [Rhodospirillum rubrum ATCC 11170]
 gi|83576101|gb|ABC22652.1| RNAse III [Rhodospirillum rubrum ATCC 11170]
          Length = 221

 Score =  145 bits (366), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 83/216 (38%), Positives = 119/216 (55%), Gaps = 2/216 (0%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L+  + + F + +LL +ALTH S     + SYERLEFLGDR+LGL+++ +L+  F + 
Sbjct: 6   NALQIALDHRFTDPALLARALTHRS--REGRPSYERLEFLGDRVLGLVVAEMLYARFPTE 63

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG L+ R  SLV  +T ++VA+ + L   + +S    +    F  S+  DV E+++ AL
Sbjct: 64  DEGALARRHASLVRQDTVARVAQSVGLGELMELSRGEEELGGQFNPSLLCDVCEAVLGAL 123

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           +LDGG   A  FV+  W     +     +DAKT LQEWA  +    P Y V  R GP H 
Sbjct: 124 HLDGGYAKAQRFVEARWAPLMAEDLTPPKDAKTALQEWAQGRGLPLPTYAVEGRDGPPHK 183

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           P FTV V +        +  SKR AEQ AA  +L R
Sbjct: 184 PMFTVSVTVKDNGSESALGASKRLAEQAAAQRLLDR 219


>gi|159042756|ref|YP_001531550.1| ribonuclease III [Dinoroseobacter shibae DFL 12]
 gi|189043308|sp|A8LLD9|RNC_DINSH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|157910516|gb|ABV91949.1| ribonuclease III [Dinoroseobacter shibae DFL 12]
          Length = 229

 Score =  145 bits (366), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 82/204 (40%), Positives = 117/204 (57%), Gaps = 12/204 (5%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71
           RIG+ F    LL +ALTH+S S + +   +RLEFLGDR+LGL+++  L      A+EG+L
Sbjct: 13  RIGHRFDRPELLVRALTHASRSTAGRSDNQRLEFLGDRVLGLVMAEALLEADPQAREGQL 72

Query: 72  SVRFNSLVSAETCSQVARELDLASFIR------VSSDLRKDVCSFMTSIQADVVESLIAA 125
           + R+N+LV  ETC++VARE+ L   +R      ++   RKD      ++  D +E++IAA
Sbjct: 73  APRYNALVRKETCAEVAREIGLGDVLRLGRSEMLTGGRRKD------ALLGDGMEAVIAA 126

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           +Y D G E A   + + W +R        RD KT LQEWA A+    P Y  + RSGPDH
Sbjct: 127 VYRDAGFEAAKALILRLWGKRIGAVEADARDPKTALQEWAQARGLPPPAYIESARSGPDH 186

Query: 186 DPRFTVVVEISGLAPAQGMDCSKR 209
            P FT+   +   A A+    SKR
Sbjct: 187 APVFTISARLETGACAEAQAGSKR 210


>gi|68171854|ref|ZP_00545186.1| Ribonuclease III [Ehrlichia chaffeensis str. Sapulpa]
 gi|88658070|ref|YP_507839.1| ribonuclease III [Ehrlichia chaffeensis str. Arkansas]
 gi|123492713|sp|Q2GFE4|RNC_EHRCR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|67998723|gb|EAM85443.1| Ribonuclease III [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599527|gb|ABD44996.1| ribonuclease III [Ehrlichia chaffeensis str. Arkansas]
          Length = 226

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/219 (37%), Positives = 120/219 (54%), Gaps = 6/219 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ K I Y F N  LL +ALTH S+    + + +YERLEFLGD +L ++IS +LFN F  
Sbjct: 4   SISKIIKYNFKNPQLLNEALTHPSLVSKDTLKFNYERLEFLGDAVLNIVISEMLFNIFPK 63

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA--DVVESLI 123
             EG L+ +  +LV      +VA+ ++L  FI +S   R   C  + + +   + +E+LI
Sbjct: 64  DTEGNLAKKKTALVCGNKLVEVAQSINLGQFIMMSDGER--ACGGINNFRNLENALEALI 121

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            A+YLDGG   A  F+  +W+  A       +DAKT LQE    K    P Y    +SGP
Sbjct: 122 GAIYLDGGFTAAQDFIYLFWEHSATHMNVPPQDAKTILQELVQGKRLPAPAYHTIDKSGP 181

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           DH+P FTV V I      Q    +K+ AEQ AA+ +L +
Sbjct: 182 DHNPTFTVEVRIPSYQAIQATGHNKKLAEQKAASLMLNQ 220


>gi|84500562|ref|ZP_00998811.1| Ribonuclease III [Oceanicola batsensis HTCC2597]
 gi|84391515|gb|EAQ03847.1| Ribonuclease III [Oceanicola batsensis HTCC2597]
          Length = 226

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 76/198 (38%), Positives = 111/198 (56%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71
           RIG+ F    LL +++THSS+S   ++  +RLEFLGDR+LGL+++  L     +A EG+L
Sbjct: 13  RIGHDFRRPELLVQSVTHSSVSSPTRDDNQRLEFLGDRVLGLVMAEALLASDRAASEGQL 72

Query: 72  SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131
           + RFN+LV  E C+ VARE+ L + +++    +        ++  D +E++IAA+YLDGG
Sbjct: 73  APRFNALVRKEACADVAREVGLGAVLKLGRSEQLSGGRRKQALLGDAMEAVIAAVYLDGG 132

Query: 132 IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
              A   + + W  R  +     RDAKT LQEWA  +    P Y    R GPDH P F +
Sbjct: 133 FAAARDMILRLWGARVAQVDVDARDAKTALQEWAQGRGLPPPSYIEVAREGPDHAPEFRI 192

Query: 192 VVEISGLAPAQGMDCSKR 209
              +     AQ    SKR
Sbjct: 193 EARLVTGETAQASAGSKR 210


>gi|296283699|ref|ZP_06861697.1| ribonuclease III [Citromicrobium bathyomarinum JL354]
          Length = 223

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 80/211 (37%), Positives = 116/211 (54%), Gaps = 2/211 (0%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           G+A  + +L  +ALTH S+       Y+RLEFLGDR+LGL I+  LF + +SA EG L+ 
Sbjct: 15  GFAARDEALWNEALTHGSLGEG--RDYQRLEFLGDRVLGLAIAEWLFENQNSASEGTLAQ 72

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           R N+LVS   C++VAR + +   +R+    R+D  +  ++I  DV+ESL+ A   + G E
Sbjct: 73  RLNALVSKGACAKVARSIGVPDHLRLGRQAREDGGAQSSNILGDVMESLLGAQLREDGFE 132

Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
            A   V   W+          +  K+ LQEWA       PEY +  RSGPDH  RFTV V
Sbjct: 133 SARALVRALWRDAVEGDAGRAKHPKSALQEWAAGNRRRPPEYALIDRSGPDHAARFTVRV 192

Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            +  +  A+    SK+ AE  AA   +++ G
Sbjct: 193 SVKNVGDAEATANSKQEAETAAAKAFMEQYG 223


>gi|255264048|ref|ZP_05343390.1| ribonuclease III [Thalassiobium sp. R2A62]
 gi|255106383|gb|EET49057.1| ribonuclease III [Thalassiobium sp. R2A62]
          Length = 226

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 73/186 (39%), Positives = 108/186 (58%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           E R+G+ F   +LL +A+TH+S+S   ++  +RLEFLGDR+LGL+++  L      A EG
Sbjct: 11  EGRLGHRFETPALLVQAVTHASMSSPNRDDNQRLEFLGDRVLGLVMAEALLAADPMAPEG 70

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
            L+ R+N+LV  E C+ VARE+D+ + +++     K       ++  D +E++IAA+YLD
Sbjct: 71  ILAPRYNALVRKEACADVAREVDVGAVLKLGRSEMKSGGRRKLALLGDAMEAVIAAVYLD 130

Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
            G E A   V + W  R        RDAKT LQEWA  +    P Y    R+GPDH P F
Sbjct: 131 AGFEAAREMVLRLWGTRIHTVKADARDAKTALQEWAQGRGEGPPNYTEVSRTGPDHAPIF 190

Query: 190 TVVVEI 195
            + V +
Sbjct: 191 EIEVRL 196


>gi|296115041|ref|ZP_06833683.1| ribonuclease III [Gluconacetobacter hansenii ATCC 23769]
 gi|295978378|gb|EFG85114.1| ribonuclease III [Gluconacetobacter hansenii ATCC 23769]
          Length = 255

 Score =  142 bits (358), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 77/208 (37%), Positives = 108/208 (51%), Gaps = 16/208 (7%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----------------SYERLEFLGDR 49
           +  +E  +GY F N +LL +ALTH S +H                    S ERLEF+GDR
Sbjct: 22  FERIEAYVGYCFRNAALLHEALTHRSAAHQRSSAIGRRTRQSVARRGAGSNERLEFIGDR 81

Query: 50  ILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS 109
           +LGLL++  L   F   +EG L  R   LVS    + +A ++ L S + V+    +    
Sbjct: 82  VLGLLMAEWLLERFPDEQEGALGPRHAHLVSRAVLAHIAEDMALPSALDVAEHEARAGVR 141

Query: 110 FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKF 169
            M ++ AD VE+++ A+YLDGG+E A  FV + W    +   +  +D KT LQEW  A+ 
Sbjct: 142 QMANVLADAVEAILGAIYLDGGLEPARAFVRRAWNNAIVAQARPPKDPKTALQEWVLARG 201

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISG 197
              P YKV    GP H PRF + VE SG
Sbjct: 202 LPLPVYKVVSTDGPSHAPRFVISVEASG 229


>gi|317131320|ref|YP_004090634.1| ribonuclease III [Ethanoligenens harbinense YUAN-3]
 gi|315469299|gb|ADU25903.1| ribonuclease III [Ethanoligenens harbinense YUAN-3]
          Length = 226

 Score =  141 bits (356), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 88/219 (40%), Positives = 124/219 (56%), Gaps = 9/219 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           LEK +GY FA++SLLE ALTHSS ++  ++    S ERLEFLGD +LG++ +  L+ H  
Sbjct: 5   LEKNLGYTFADKSLLENALTHSSYANEMKKHSCGSNERLEFLGDAVLGIISAEYLYFHHT 64

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGEL+    S+V   +    AR ++L  ++R+            +SI AD  E++IA
Sbjct: 65  RVPEGELTRLRASMVCERSLQGFARTVELGRWLRLGRGEENTGGRERSSILADAFEAVIA 124

Query: 125 ALYLDGGIEVAGTFVDKY---WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           A+Y+DGG   A  FV ++   +    L++G  RRD KTELQE      G   EY +   S
Sbjct: 125 AIYIDGGFPAAKRFVTRFADSFFAAHLENG--RRDYKTELQEIVQKNHGEKLEYVLVGES 182

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           GPDHD +F V V ++      G   SK+ AEQ+AA E L
Sbjct: 183 GPDHDKQFLVEVHLNNNCIGAGRGGSKKEAEQMAAREAL 221


>gi|332653520|ref|ZP_08419265.1| ribonuclease III [Ruminococcaceae bacterium D16]
 gi|332518666|gb|EGJ48269.1| ribonuclease III [Ruminococcaceae bacterium D16]
          Length = 226

 Score =  141 bits (355), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 83/206 (40%), Positives = 119/206 (57%), Gaps = 3/206 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHF 63
           +TLE+++GY F NR LLE ALTHSS ++  +   +S ERLEFLGD ILG++++  L+   
Sbjct: 2   TTLEEKLGYQFQNRELLENALTHSSCANESRGKLQSNERLEFLGDSILGMVVADHLYRGH 61

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EGEL+    +LV  E+  +VA+ LDL S++ +             SIQAD VE+++
Sbjct: 62  PDLPEGELTRVRAALVCEESLVEVAQALDLGSYLLLGKGEEAGGGRTRPSIQADAVEAVL 121

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           AA+YLDGGI  A   + KY   R ++     RD KT LQE    + G   +Y++    GP
Sbjct: 122 AAVYLDGGIGSARKIIQKYILCREIEGITSPRDYKTALQELVQRESGQVLKYRLVGSQGP 181

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKR 209
           DH  RF V V+++G     G   SK+
Sbjct: 182 DHAKRFFVDVDLNGEPVGSGEGHSKK 207


>gi|224582877|ref|YP_002636675.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|224467404|gb|ACN45234.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
          Length = 245

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/225 (36%), Positives = 125/225 (55%), Gaps = 6/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 20  MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 76

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 77  HRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTVE 136

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  ++K R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 137 ALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 196

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222
              G  HD  FT+  ++SGL+ P  G   S+R AEQ AA +VLK+
Sbjct: 197 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQVLKK 241


>gi|327399771|ref|YP_004340640.1| Ribonuclease 3 [Hippea maritima DSM 10411]
 gi|327182400|gb|AEA34581.1| Ribonuclease 3 [Hippea maritima DSM 10411]
          Length = 234

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 81/216 (37%), Positives = 124/216 (57%), Gaps = 2/216 (0%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            E+R+GY F N+ LL++ALTH S      +S ERLEFLGD +L L+++  L N++ +  E
Sbjct: 13  FEERLGYTFKNKELLKRALTHRSYVKDKAKSNERLEFLGDAVLELVVTEFLINNYKNIDE 72

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    + V+ +T S++AR+L+L+  I V    +K+  +   SI  D  E+++ A+YL
Sbjct: 73  GKLSKIRAASVNTKTLSKLARKLELSDQILVGRSEKKEGITNNDSILEDAFEAIVGAIYL 132

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           DGG++ A  FV+   K    A+       D KT LQE    +FG  PEY +    G +H+
Sbjct: 133 DGGLDKARRFVEHMLKDTIIAIVENGIIFDYKTHLQEITQKQFGCLPEYVIVKEDGQEHN 192

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             F   V I G+    G+  SK+ AE+ AA E +K+
Sbjct: 193 KTFYCDVMIKGVKYGFGIGKSKKDAEKNAAKEAVKK 228


>gi|90101642|sp|Q57LD0|RNC_SALCH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
          Length = 226

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 81/225 (36%), Positives = 125/225 (55%), Gaps = 6/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD +E
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTME 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  ++K R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222
              G  HD  FT+  ++SGL+ P  G   S+R AEQ AA +VLK+
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQVLKK 222


>gi|62181146|ref|YP_217563.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|62128779|gb|AAX66482.1| RNase III, ds RNA [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322715636|gb|EFZ07207.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 245

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/225 (36%), Positives = 125/225 (55%), Gaps = 6/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 20  MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 76

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD +E
Sbjct: 77  HRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTME 136

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  ++K R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 137 ALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 196

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222
              G  HD  FT+  ++SGL+ P  G   S+R AEQ AA +VLK+
Sbjct: 197 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQVLKK 241


>gi|260771275|ref|ZP_05880202.1| ribonuclease III [Vibrio furnissii CIP 102972]
 gi|260613872|gb|EEX39064.1| ribonuclease III [Vibrio furnissii CIP 102972]
          Length = 225

 Score =  139 bits (350), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 85/219 (38%), Positives = 122/219 (55%), Gaps = 6/219 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S LE ++GY F N  L+  ALTH S +  + E   RLEFLGD IL  +I+  L++ F   
Sbjct: 6   SRLETKLGYQFNNAELISLALTHRSANGKHNE---RLEFLGDSILSFVIADDLYHRFPKV 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG++S    +LV   T +++ RE DL  ++++     K       SI AD VE++I A+
Sbjct: 63  NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 122

Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD  IEVA   V  +++ R  A+K G  ++D KT LQE+   +    P Y VT   G  
Sbjct: 123 YLDSDIEVARATVLSWYQSRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 182

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222
           H+  FTV  +I+G+ AP  G   S+R AEQ AA   L++
Sbjct: 183 HNQEFTVACDIAGIGAPVIGKGTSRRKAEQAAAETALEQ 221


>gi|326203626|ref|ZP_08193490.1| ribonuclease III [Clostridium papyrosolvens DSM 2782]
 gi|325986446|gb|EGD47278.1| ribonuclease III [Clostridium papyrosolvens DSM 2782]
          Length = 236

 Score =  138 bits (348), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 86/224 (38%), Positives = 119/224 (53%), Gaps = 6/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           R S LE  IG+ F N+ ++  A+THSS ++  +    +  ERLEFLGD +LGL+IS  LF
Sbjct: 9   RISELENIIGHNFNNKDIIFAAITHSSYANEKKAKKLKYNERLEFLGDSVLGLVISEYLF 68

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
               +  EGELSV    +V   + SQ A ++ L  ++ +             S+ +D  E
Sbjct: 69  QKKPNLPEGELSVTRAKIVCENSLSQCATDISLGKYLLLGKGEELSGGREKISLLSDAFE 128

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI ALY+DGG E A  FV KY  +  R+   GK   D KT+LQE           Y VT
Sbjct: 129 ALIGALYIDGGFETAKGFVHKYMDKIIRSCIEGKLFYDYKTQLQELVQQNGEQQISYSVT 188

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            + GPDH+  F   V+I+G+   QG   SK+ AEQ AA + L  
Sbjct: 189 DQFGPDHNKTFVTEVKINGVTQGQGKGHSKKEAEQNAAKDALNN 232


>gi|119774017|ref|YP_926757.1| ribonuclease III [Shewanella amazonensis SB2B]
 gi|189043345|sp|A1S3Y1|RNC_SHEAM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|119766517|gb|ABL99087.1| RNAse III [Shewanella amazonensis SB2B]
          Length = 226

 Score =  138 bits (348), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 87/216 (40%), Positives = 127/216 (58%), Gaps = 6/216 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L + +GY F++  LLE+ALTH S S+ + E   RLEFLGD IL ++IS  LF+ F  A E
Sbjct: 10  LCRTLGYEFSDIRLLEQALTHRSASNQHNE---RLEFLGDSILSIVISDALFHQFPKATE 66

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    +LV  +T + +A+E  L  ++ +     K       SI AD VE++I A+YL
Sbjct: 67  GDLSRMRATLVRGDTLAVIAKEFKLGDYLNLGPGELKSGGFRRESILADAVEAIIGAVYL 126

Query: 129 DGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D  +E   + +  +++ R   +K G  ++DAKT LQE+        PEY+VT   G  HD
Sbjct: 127 DADLETCRSLLLGWYETRLADIKPGVGQKDAKTLLQEYLQGMKKPLPEYQVTQVEGEAHD 186

Query: 187 PRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLK 221
             FTV   ++ LA A  G+  S+R AEQ+AAA+VL+
Sbjct: 187 QTFTVECRVTDLADAVVGVGSSRRKAEQMAAAQVLE 222


>gi|326794405|ref|YP_004312225.1| ribonuclease 3 [Marinomonas mediterranea MMB-1]
 gi|326545169|gb|ADZ90389.1| Ribonuclease 3 [Marinomonas mediterranea MMB-1]
          Length = 227

 Score =  138 bits (348), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 94/225 (41%), Positives = 126/225 (56%), Gaps = 7/225 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           MS+L Y  L +RIGY FA+  LLE ALTH S      ++ ERLEFLGD IL  +I+  LF
Sbjct: 1   MSSL-YQKLCRRIGYFFADLGLLELALTHRSYG---GKNNERLEFLGDSILNYVIAEDLF 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F  AKEGELS    SLV  +T +++ARE  L  F+++ +   K       SI AD VE
Sbjct: 57  HRFPKAKEGELSRLRASLVKGDTLAELAREFQLGDFLKLGAGELKSGGFRRDSILADTVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
            +I A+YLD G++     + +++K R  A       +DAKT LQE+  A+    P+Y+V 
Sbjct: 117 GIIGAMYLDAGMDTCKNQILEWYKTRLDATSLNVVTKDAKTRLQEYLQARKHGLPQYEVV 176

Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKR 222
              G  HD  F V   I     A +G   S+R AEQ AAAE L +
Sbjct: 177 NIDGEPHDQTFFVHCHIEIFDQAVEGKGNSRRIAEQNAAAEALSQ 221


>gi|254452330|ref|ZP_05065767.1| ribonuclease III [Octadecabacter antarcticus 238]
 gi|198266736|gb|EDY91006.1| ribonuclease III [Octadecabacter antarcticus 238]
          Length = 197

 Score =  138 bits (348), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 78/191 (40%), Positives = 108/191 (56%)

Query: 32  ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91
           +S   ++  +RLEFLGDR+LGL++S  L     +A EG L+ RFN+LV  ETC+ VAR++
Sbjct: 1   MSTPNRDDNQRLEFLGDRVLGLVMSEALLQADVNAPEGLLAPRFNALVRKETCADVARQI 60

Query: 92  DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151
           DL + +++             ++ AD +E++IAA+Y+D G +VA   V   W  R     
Sbjct: 61  DLGAVLKLGRSEMLTGGRRKEALLADAMEAVIAAVYIDAGFDVARERVVALWGDRISNVE 120

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
           +  RD KT LQEWA  +    P Y  T RSGPDH P FT+ V +   A       SKR A
Sbjct: 121 EDARDPKTALQEWAQGQGEPPPSYIETARSGPDHAPIFTIEVRLHSGATDTATAPSKRQA 180

Query: 212 EQVAAAEVLKR 222
           EQ AA  +L R
Sbjct: 181 EQAAAKSLLDR 191


>gi|78223520|ref|YP_385267.1| ribonuclease III:double-stranded RNA binding [Geobacter
           metallireducens GS-15]
 gi|90101627|sp|Q39T82|RNC_GEOMG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|78194775|gb|ABB32542.1| RNAse III [Geobacter metallireducens GS-15]
          Length = 246

 Score =  138 bits (347), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 85/223 (38%), Positives = 119/223 (53%), Gaps = 7/223 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSS-ISHSYQES----YERLEFLGDRILGLLISTLLFN 61
           + LE  IGY F NR  L +ALTH S ++    E      ERLEFLGD +LGLL+  +LF 
Sbjct: 17  TELEAGIGYRFVNRQFLAEALTHRSWVNERRGEEGIRDNERLEFLGDAVLGLLVGKMLFA 76

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F  ++EG L+    SLV  ET + +A    L   + +     +       S+ A+  E+
Sbjct: 77  RFPQSREGVLARMKASLVGEETLAALASARGLGRHLLLGRGEERSGGRERRSLLANTYEA 136

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           L+AA+YLDGG+      V++ +      + SG   RD KTE QE    +FG  P Y++  
Sbjct: 137 LLAAVYLDGGLGPVERIVEQDFSPLLAGIASGATGRDFKTEFQEMVQTRFGTAPTYELIA 196

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             GP HD RFTV+  ++G    +G   SK+ AEQ AA +VL R
Sbjct: 197 TDGPPHDRRFTVIAMVAGKRMGEGAGRSKKEAEQAAARQVLAR 239


>gi|89094542|ref|ZP_01167480.1| ribonuclease III [Oceanospirillum sp. MED92]
 gi|89081141|gb|EAR60375.1| ribonuclease III [Oceanospirillum sp. MED92]
          Length = 226

 Score =  138 bits (347), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 88/217 (40%), Positives = 126/217 (58%), Gaps = 6/217 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L +RIG+ F++ SL E ALTH S     +++ ERLEFLGD IL  +I+  L+  F  A
Sbjct: 6   NELARRIGHDFSDLSLFELALTHRSCG---KKNNERLEFLGDSILNFVIADDLYARFPKA 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           KEGELS     +V   T S+VAREL L  ++R+ S   K       SI AD VE++I A+
Sbjct: 63  KEGELSRLRARMVKGVTLSEVARELGLGDYLRLGSGELKSGGFRRDSILADAVEAIIGAI 122

Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD  ++ A  ++ K+++QR   L   +  +D+KT LQE+  ++    PEY++T   G  
Sbjct: 123 YLDSDMDTARAYILKWFEQRLSTLDLNESLKDSKTRLQEFLQSRRLALPEYELTNVEGEA 182

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVL 220
           H   F +   +SGL  PA+G   S+R AEQ AA   L
Sbjct: 183 HAQTFYIDCRVSGLNNPAKGTGSSRRQAEQEAAKNAL 219


>gi|291288904|ref|YP_003505720.1| ribonuclease III [Denitrovibrio acetiphilus DSM 12809]
 gi|290886064|gb|ADD69764.1| ribonuclease III [Denitrovibrio acetiphilus DSM 12809]
          Length = 235

 Score =  138 bits (347), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 81/229 (35%), Positives = 132/229 (57%), Gaps = 6/229 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTL 58
           +S++   +LE R+GY F+++S++ +ALTH S +H    +++YERLEFLGD +L L+++  
Sbjct: 5   VSSVDIDSLEGRLGYHFSDKSIVLEALTHRSYAHEKKNKQNYERLEFLGDAVLQLIVTEY 64

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L + +    EG LS      VS    S++A EL L   I +    +     +  S+  D+
Sbjct: 65  LLDRYKDYDEGLLSKLRGYFVSEGFLSRIAIELKLGEHILLGKGEKASGGKYKESLLCDI 124

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRA---LKSGKFRRDAKTELQEWAHAKFGVTPEY 175
            ES++AA+YLDGG   A   + +++  R    + +  F  DAK+ELQ+ +  KFG  P+Y
Sbjct: 125 FESVVAAIYLDGGYGFARDIIIRHFGSRIDEDISNSSF-VDAKSELQKISQRKFGTLPDY 183

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            V    GP+HD  F V V++  L   QG+  +K++AE+ AA   L++ G
Sbjct: 184 TVLDEKGPEHDKIFVVRVDVETLVSEQGIGKTKKSAEKDAAKNALRKLG 232


>gi|167645701|ref|YP_001683364.1| ribonuclease III [Caulobacter sp. K31]
 gi|189043302|sp|B0T3I0|RNC_CAUSK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|167348131|gb|ABZ70866.1| Ribonuclease III [Caulobacter sp. K31]
          Length = 232

 Score =  137 bits (346), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 91/197 (46%), Positives = 123/197 (62%), Gaps = 3/197 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLFNHFD 64
           + LE+RIG+ FA+R LLE ALTH+S+    +++   E LEF+GDR+LGLL +  L   F 
Sbjct: 9   ADLERRIGHTFADRKLLELALTHASVGDGAKKAGDNEVLEFIGDRVLGLLAAEALAERFP 68

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            AKEGEL+ R N+LVS ETC++VAR  ++   +R+S+   K       SI A   E+L+A
Sbjct: 69  KAKEGELAPRLNALVSRETCARVARGAEMGPALRLSASSSKIGGRETDSILAGAAEALMA 128

Query: 125 ALYLDGGIEVA-GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           ALY DGG+E+A   F+D +  +  L +    RD KT LQEWA ++    P Y V  R GP
Sbjct: 129 ALYRDGGLELARRVFLDLWAGEFDLANQGKPRDPKTALQEWAQSQGKPLPTYAVKDRKGP 188

Query: 184 DHDPRFTVVVEISGLAP 200
           DH P FTV V + GL P
Sbjct: 189 DHAPMFTVQVTVVGLDP 205


>gi|294084100|ref|YP_003550858.1| Ribonuclease III [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292663673|gb|ADE38774.1| Ribonuclease III [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 230

 Score =  137 bits (346), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 81/217 (37%), Positives = 119/217 (54%), Gaps = 4/217 (1%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M ++    L +R+ + F ++S+L +ALTH+S +   + S ERLEFLGDR+LGL+++   +
Sbjct: 1   MKSVDLKPLAERLAHKFNDQSVLVRALTHASFAGPTK-SNERLEFLGDRVLGLVLADFFY 59

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                  EG+LS+R ++        +V REL+LA FI V + +     +   S+ AD VE
Sbjct: 60  GQCPDEDEGKLSLRLHADARQSKLVEVGRELELARFISVQNGM---ALAENESVIADAVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           SLIAA YLDGG EVA  F+  YW           +DAK+ LQE    +    P Y++  +
Sbjct: 117 SLIAAHYLDGGFEVARRFILAYWALDTAAPAGTDKDAKSRLQELVMKQGLALPHYRLISK 176

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           SGPDH P     V + G         +++ AEQ AAA
Sbjct: 177 SGPDHAPEMIYEVSVEGYDSIVASASNRKLAEQQAAA 213


>gi|222475478|ref|YP_002563895.1| ribonuclease III (rnc) [Anaplasma marginale str. Florida]
 gi|254995287|ref|ZP_05277477.1| ribonuclease III [Anaplasma marginale str. Mississippi]
 gi|255003466|ref|ZP_05278430.1| ribonuclease III [Anaplasma marginale str. Puerto Rico]
 gi|254807234|sp|B9KGT5|RNC_ANAMF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|222419616|gb|ACM49639.1| ribonuclease III (rnc) [Anaplasma marginale str. Florida]
          Length = 232

 Score =  137 bits (346), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 80/210 (38%), Positives = 113/210 (53%), Gaps = 1/210 (0%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           GY F +  LL +ALTH S+S+    +YERLEFLGD +L + +S +L+  F    EG L+ 
Sbjct: 18  GYQFRDLDLLLEALTHPSLSYKSAANYERLEFLGDAVLSMTVSEMLYRLFPDDDEGCLTR 77

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           +  +LV      ++AR + L   I +S   R    S       + +E+LI A+Y+DGG E
Sbjct: 78  KRTALVRGSEVVEIARSIGLGELILMSGGERTCGGSDNPGTLENALEALIGAMYMDGGPE 137

Query: 134 VAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
              +F+ K+W  RA   S    +D KT LQEW   +    P YK+  +SGP+H P F V 
Sbjct: 138 AYRSFIHKHWLARAQHMSYTPPQDPKTALQEWVQGRGWAMPLYKLVSKSGPEHKPVFAVE 197

Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           V I       G   SK+ AEQ AA  +LK+
Sbjct: 198 VSIQEHGNVLGTGSSKKLAEQEAAKLMLKK 227


>gi|114327656|ref|YP_744813.1| ribonuclease III [Granulibacter bethesdensis CGDNIH1]
 gi|114315830|gb|ABI61890.1| ribonuclease III [Granulibacter bethesdensis CGDNIH1]
          Length = 258

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 84/224 (37%), Positives = 120/224 (53%), Gaps = 12/224 (5%)

Query: 10  EKRIGYAFANRSLLEKALTHSS---ISHSYQE--------SYERLEFLGDRILGLLISTL 58
           E  + + FA R LL +ALTH S   I H            S ERLEF+GDR+LGL+++  
Sbjct: 23  EALLSHRFARRDLLAEALTHRSAVKIMHGQTGQSLPRGAGSNERLEFVGDRVLGLVVAEW 82

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L   F   +EGEL  R   LVS    + +A +  L   + V+    K     + ++ +D 
Sbjct: 83  LVERFPLEQEGELGRRLAHLVSQPVLAGIAEQSGLPQILSVAPGEAKAGVRKLATVLSDA 142

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +E+LI ALYLD G++    F+ ++W+    +  +  +DAKT LQEWA       P Y++ 
Sbjct: 143 MEALIGALYLDAGLDPVRQFIRRHWEPVMQRQTEPPKDAKTALQEWAQGLGLHLPTYRLA 202

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            R GP H+P F V V + G    QG   SKRAAEQ+AA ++L R
Sbjct: 203 RREGPPHNPVFWVEV-LVGDHVGQGQAGSKRAAEQLAAQDLLGR 245


>gi|291542641|emb|CBL15751.1| RNAse III [Ruminococcus bromii L2-63]
          Length = 225

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/222 (38%), Positives = 127/222 (57%), Gaps = 7/222 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESY----ERLEFLGDRILGLLISTLLFNHFD 64
           L+KRIGY F N  LL +ALTHSS ++ ++  +    ERLEFLGD +L +++S  +F H  
Sbjct: 4   LQKRIGYTFKNTDLLTEALTHSSYANEHKAKHIKYNERLEFLGDAVLSIVVSDYIFKHCP 63

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGEL+    SLV  +T  + A++++L  ++ +S   R +  +   SI +D  E+LIA
Sbjct: 64  ELPEGELTKLRASLVCEKTLFEFAKQIELGKYLVLSKGERNNGGAERPSILSDAFEALIA 123

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+Y+DGGI+ A   +  +    A+K+ K ++  D KT LQE      G   EY +   SG
Sbjct: 124 AIYIDGGIDPASKHILNFVIP-AIKNSKKKKLNDYKTALQEIIQKNPGEQLEYVLVGESG 182

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           PDH+  F V V ++     +G   SK+ AEQ AA E L+  G
Sbjct: 183 PDHNKHFVVEVHLNSNVIGKGGGRSKKEAEQQAAREALELMG 224


>gi|262277162|ref|ZP_06054955.1| ribonuclease III [alpha proteobacterium HIMB114]
 gi|262224265|gb|EEY74724.1| ribonuclease III [alpha proteobacterium HIMB114]
          Length = 225

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 77/212 (36%), Positives = 119/212 (56%), Gaps = 1/212 (0%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +EK +   F N+SL+E+A TH S S +   + ERLEFLGDR+LGL+I++ L +++    E
Sbjct: 9   VEKILEIKFNNKSLIEQAFTHKSKSVNINNNNERLEFLGDRVLGLVIASYLNDNYPKDSE 68

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G L  +  SLV+ ETCS++   L++  F+ + S+ +K   +    I  D+ ES+I A+++
Sbjct: 69  GVLDKKLASLVNKETCSKIISSLEIDRFLSL-SEAQKQNKAGNKKILGDLCESIIGAVFM 127

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           D G E    F+ K WK+    + +   D KT+LQE++   +   P YK    SGP H P 
Sbjct: 128 DKGFEQTKKFILKIWKENLKNTTQVFIDPKTKLQEYSLKLYKKLPVYKYISNSGPSHKPN 187

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           F V V I           SK+ AE  AA +++
Sbjct: 188 FRVSVSIEQSKSFVATGTSKKNAETNAAKKLI 219


>gi|255004592|ref|ZP_05279393.1| ribonuclease III [Anaplasma marginale str. Virginia]
          Length = 232

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/210 (38%), Positives = 113/210 (53%), Gaps = 1/210 (0%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           GY F +  LL +ALTH S+S+    +YERLEFLGD +L + IS +L+  F    EG L+ 
Sbjct: 18  GYQFRDLDLLLEALTHPSLSYKSAANYERLEFLGDAVLSMTISEMLYRLFPDDDEGCLTR 77

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           +  +LV      ++AR + L   I +S   R    S       + +E+LI A+Y+DGG E
Sbjct: 78  KRTALVRGSEVVEIARSIGLGELILMSGGERTCGGSDNPGTLENALEALIGAMYMDGGPE 137

Query: 134 VAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
              +F+ K+W  RA   S    +D KT LQEW   +    P YK+  +SGP+H P F V 
Sbjct: 138 AYRSFIHKHWLARAQHMSYTPPQDPKTALQEWVQGRGWAMPLYKLVSKSGPEHKPVFAVE 197

Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           V I       G   SK+ AEQ AA  +L++
Sbjct: 198 VSIQEHGNVLGTGSSKKLAEQEAAKLMLQK 227


>gi|317050765|ref|YP_004111881.1| ribonuclease III [Desulfurispirillum indicum S5]
 gi|316945849|gb|ADU65325.1| ribonuclease III [Desulfurispirillum indicum S5]
          Length = 247

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/225 (37%), Positives = 125/225 (55%), Gaps = 8/225 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFN 61
           R + LE+R+GY F  + LL  ALTH S  HS +   E+ ERLEFLGD +LGL+IS  L  
Sbjct: 10  RIAPLEERLGYVFMRKELLHTALTHRSFFHSNRKSAENNERLEFLGDSVLGLIISHYLLE 69

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            F +  EG+LS   + +V+ +T S+VARE + L  ++ +             SI AD +E
Sbjct: 70  SFPAQSEGKLSKIRSFIVNEKTLSRVAREKIQLGRYLFIGKGEENTGGRNKASILADAME 129

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKV 177
           +++AA+YLDGG+  A   + +   +  ++S  F    RD KTELQE +     + PEY+V
Sbjct: 130 AVVAAIYLDGGLNAARNIILELMSEE-IESTVFSNRHRDYKTELQELSQGSLSLAPEYRV 188

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
               GPDH   F V + +       G   SK++AEQ AA   +++
Sbjct: 189 EREWGPDHQKHFAVSLYLHDQVYGHGEGTSKKSAEQKAARAAMEK 233


>gi|326387678|ref|ZP_08209284.1| ribonuclease III [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207724|gb|EGD58535.1| ribonuclease III [Novosphingobium nitrogenifigens DSM 19370]
          Length = 233

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 85/210 (40%), Positives = 113/210 (53%), Gaps = 5/210 (2%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS-AKEGEL 71
            G+    + L  +ALTH S+  +    Y+RLEFLGDR+LGL ++  L  H DS A EG+L
Sbjct: 25  FGHEPIRQDLWHEALTHGSLGEA--RDYQRLEFLGDRVLGLAVAEWL--HGDSSAAEGKL 80

Query: 72  SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131
           S R N+LVS ETC+ VAR L +A  +R+    R D  +   +I  DV+E+LI AL+L+ G
Sbjct: 81  SQRLNALVSRETCADVARTLGIAPHMRLGKQARDDGGADSDNILGDVMEALIGALFLERG 140

Query: 132 IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
              A  FV + W          R+  K  LQEWA       P Y +  R GPDH   FTV
Sbjct: 141 FPAARDFVRRAWAAPMAAGAGQRKHPKAALQEWAAGNKRKPPIYTLVAREGPDHAATFTV 200

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V + G+        SK+ AE  AA E +K
Sbjct: 201 SVTVKGVGEMTARGSSKQEAETSAAREFMK 230


>gi|56417113|ref|YP_154187.1| ribonuclease III [Anaplasma marginale str. St. Maries]
 gi|81358903|sp|Q5P9U8|RNC_ANAMM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|56388345|gb|AAV86932.1| ribonuclease III [Anaplasma marginale str. St. Maries]
          Length = 232

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 79/210 (37%), Positives = 112/210 (53%), Gaps = 1/210 (0%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           GY F +  LL +ALTH  +S+    +YERLEFLGD +L + +S +L+  F    EG L+ 
Sbjct: 18  GYQFRDLDLLLEALTHPRLSYKSAANYERLEFLGDAVLSMTVSEMLYRLFPDDDEGCLTR 77

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           +  +LV      ++AR + L   I +S   R    S       + +E+LI A+Y+DGG E
Sbjct: 78  KRTALVRGSEVVEIARSIGLGELILMSGGERTCGGSDNPGTLENALEALIGAMYMDGGPE 137

Query: 134 VAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
              +F+ K+W  RA   S    +D KT LQEW   +    P YK+  +SGP+H P F V 
Sbjct: 138 AYRSFIHKHWLARAQHMSYTPPQDPKTALQEWVQGRGWAMPLYKLVSKSGPEHKPVFAVE 197

Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           V I       G   SK+ AEQ AA  +LK+
Sbjct: 198 VSIQEHGNVLGTGSSKKLAEQEAAKLMLKK 227


>gi|114797101|ref|YP_759604.1| ribonuclease III [Hyphomonas neptunium ATCC 15444]
 gi|114737275|gb|ABI75400.1| ribonuclease III [Hyphomonas neptunium ATCC 15444]
          Length = 234

 Score =  135 bits (340), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 84/214 (39%), Positives = 119/214 (55%), Gaps = 7/214 (3%)

Query: 13  IGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           IG+ F + ++LE+ALTH S       + + S +RLEFLGDR+L L+I+  L     S  E
Sbjct: 17  IGFKFKDAAILERALTHPSAIPPSGDTVKLSNQRLEFLGDRVLNLIIAERLIERRQSDSE 76

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+L+ R N LV    C++  R L L  FI +S            S   D  E++IAA+Y 
Sbjct: 77  GDLAPRLNRLVKKGACAEAMRFLGLQRFILLSESEVAAGGHDRESTLGDACEAVIAAIYQ 136

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           +GG+  A  F+++ W  +        +D KT LQEWA  +    P+Y VT RSGPDH P+
Sbjct: 137 EGGLAAARKFIERAWAPQFENVPAETKDPKTLLQEWAQGQGHPLPDYVVTGRSGPDHAPQ 196

Query: 189 FTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLK 221
           + V V ++ G A A G   SKR AE+ AAA +L+
Sbjct: 197 YEVEVRLAVGKATATG--PSKREAERHAAALMLR 228


>gi|154500966|ref|ZP_02039004.1| hypothetical protein BACCAP_04652 [Bacteroides capillosus ATCC
           29799]
 gi|150269990|gb|EDM97509.1| hypothetical protein BACCAP_04652 [Bacteroides capillosus ATCC
           29799]
          Length = 223

 Score =  135 bits (340), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 82/211 (38%), Positives = 122/211 (57%), Gaps = 7/211 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           LE+++GY F NR+LLE ALTHSS +    H+  +S ERLEFLGD +LG++ +  L+    
Sbjct: 4   LEEKLGYTFQNRALLENALTHSSYANENKHTGAQSNERLEFLGDSVLGMVTADYLYRVHP 63

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+L+    +LV   +  +VA++L+L +++++             SI AD VE+++A
Sbjct: 64  DLPEGDLTRTRAALVCEGSLVEVAQQLELGTYLKLGKGEDAGGGRERPSIVADAVEAVLA 123

Query: 125 ALYLDGGIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           A+YLDGGI  A   + ++   R   KSG   RD KT LQE    + G    Y++   +GP
Sbjct: 124 AVYLDGGIGSARKIIQRFILDREEEKSGS--RDYKTALQELVQRESGQVLAYRLVGSTGP 181

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           DH  RF V VE++G     G   SK+ AEQ+
Sbjct: 182 DHAKRFQVEVELNGTPVGAGEGRSKKEAEQM 212


>gi|257784655|ref|YP_003179872.1| ribonuclease III [Atopobium parvulum DSM 20469]
 gi|257473162|gb|ACV51281.1| ribonuclease III [Atopobium parvulum DSM 20469]
          Length = 243

 Score =  135 bits (340), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 88/224 (39%), Positives = 115/224 (51%), Gaps = 3/224 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
           R +  E   G+ F N+ L+E ALTH S         SYERLEFLGD ILG +I+T LF  
Sbjct: 6   RVAAAEAICGHTFINKDLIEAALTHPSAVEGKPVSASYERLEFLGDSILGAIIATELFER 65

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +    EG+L+    SLVS  T S V+  L ++  I +    +      M S   +V ES+
Sbjct: 66  YPDMDEGQLTRLKISLVSGHTLSIVSDTLGVSPLIVMGISEKGTGKRGMKSALENVYESI 125

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFRS 181
           + ALYLD G E    FV +        +   R    K+ LQE   A+   TPEYK+   S
Sbjct: 126 VGALYLDAGFEPTRDFVIRTLGPHISPTLAVRSVSPKSRLQEAVQAQGKATPEYKLIGES 185

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           GP H P FT VV + GL   +G   SK+AAE  AA + L R G+
Sbjct: 186 GPAHTPTFTAVVFVDGLKVGRGQGPSKKAAESEAAQDALVRLGV 229


>gi|88608789|ref|YP_506782.1| ribonuclease III [Neorickettsia sennetsu str. Miyayama]
 gi|88600958|gb|ABD46426.1| ribonuclease III [Neorickettsia sennetsu str. Miyayama]
          Length = 222

 Score =  135 bits (339), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 78/213 (36%), Positives = 120/213 (56%), Gaps = 3/213 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L+  +G  F N+ LL +ALTH S+      SYERLEFLGD +L L+I+++L++ F    E
Sbjct: 6   LQSLLGVYFKNKDLLVEALTHPSVEKC--PSYERLEFLGDAVLNLVIASMLYDLFPGDPE 63

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G LS R ++L+   T + +AR+++L  +IR+SS          TS   +V+E+L+ A++L
Sbjct: 64  GRLSHRQSALICKNTLAMLARQMNLGDYIRLSSSEEAGGGRDKTSNLENVLEALVGAIFL 123

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           D G+E    F+ K W   A++S     + K+ LQE   AK    P Y V  RSGP H P 
Sbjct: 124 DAGLETVTCFIKKRWYGLAVQSDSIEPNPKSTLQELLQAKGMKPPIYNVINRSGPAHLPI 183

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           F + + + G    +    SK+  E+ AA  +L+
Sbjct: 184 FEIEIRVDG-KKRRATGKSKKLGEENAARMMLE 215


>gi|260437031|ref|ZP_05790847.1| ribonuclease III [Butyrivibrio crossotus DSM 2876]
 gi|292810340|gb|EFF69545.1| ribonuclease III [Butyrivibrio crossotus DSM 2876]
          Length = 227

 Score =  134 bits (338), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 86/217 (39%), Positives = 120/217 (55%), Gaps = 5/217 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHS-YQE---SYERLEFLGDRILGLLISTLL 59
           +     EK+IGYA+ N  LL+ ALTHSS  +  Y++   + ERLEFLGD +L L +S  L
Sbjct: 1   MNIKEFEKKIGYAYNNVDLLKLALTHSSYGNEVYKDKLHNNERLEFLGDAVLELTVSDYL 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           FN   +  EG LS +  S+V   T +  ARE++L   + +          F  SI +D +
Sbjct: 61  FNEECNMPEGSLSRKRASIVCEPTLAMCAREINLPEVLFMGKGEELTGGRFRDSIVSDAM 120

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E++I ++YLDGGIE A  F++K+     +K  +   D+KT LQE   A +   PEY +T 
Sbjct: 121 EAVIGSIYLDGGIECAREFINKFILAD-IKDKQLFVDSKTILQERIQAGYKEGPEYIITG 179

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            SGPDH   F   V I G     G   +K+AAEQ AA
Sbjct: 180 ESGPDHCKVFEAEVRIEGRLIGSGKGRTKKAAEQQAA 216


>gi|269958484|ref|YP_003328271.1| ribonuclease 3 [Anaplasma centrale str. Israel]
 gi|269848313|gb|ACZ48957.1| ribonuclease 3 [Anaplasma centrale str. Israel]
          Length = 249

 Score =  134 bits (338), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 79/210 (37%), Positives = 113/210 (53%), Gaps = 1/210 (0%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           GY F +  LL ++LTH S+S     +YERLEFLGD +L + +S +L+  F    EG L+ 
Sbjct: 22  GYRFRDLDLLLESLTHPSLSRESAANYERLEFLGDAVLSMAVSEMLYRLFPDDDEGCLTQ 81

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           +  +LV      ++AR + L   I +SS       S       + +E+LI A+Y+DG  E
Sbjct: 82  KRTALVRGSEVVEIARSIGLGGLILMSSGEMSCGGSDNPGTLENALEALIGAMYIDGSSE 141

Query: 134 VAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
               F+ ++W  RA + S    +D KT LQEW  ++    P YK+  +SGP+H P F V 
Sbjct: 142 DYKNFIREHWFSRAQRMSSAPPQDPKTALQEWVQSRGWTVPLYKLVSKSGPEHKPVFAVE 201

Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           V I G     G   SK+ AEQ AA  +LKR
Sbjct: 202 VSIQGHGSILGTGSSKKLAEQEAAKLMLKR 231


>gi|262375526|ref|ZP_06068759.1| ribonuclease III [Acinetobacter lwoffii SH145]
 gi|262309780|gb|EEY90910.1| ribonuclease III [Acinetobacter lwoffii SH145]
          Length = 232

 Score =  134 bits (338), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 85/223 (38%), Positives = 124/223 (55%), Gaps = 5/223 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           S L    L KRIGY F    LL+ ALTH S+SH +  +YERLEFLGD +LG++I+  LFN
Sbjct: 6   SKLNDERLAKRIGYQFKQADLLKLALTHRSVSHKH--NYERLEFLGDSLLGMIIANYLFN 63

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + S  EG L+    +LV  E   ++A +L L+  + +S+   K       SI AD VE+
Sbjct: 64  AYPSENEGRLTRMRATLVRQEALGKIANDLKLSQNLILSTGELKSGGHHRESILADTVEA 123

Query: 122 LIAALYLD-GGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +I A+Y+D G + V    V K+++     ++     +D K+ LQE+  A+    P Y+V 
Sbjct: 124 IIGAIYVDCGDLTVLEPIVLKWYEPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVV 183

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              G   +  F V  +I+GL   QG   S+R AEQ  AA++LK
Sbjct: 184 DIQGDAPNQHFKVECQIAGLPTMQGEGASRRFAEQAVAADILK 226


>gi|302342152|ref|YP_003806681.1| ribonuclease III [Desulfarculus baarsii DSM 2075]
 gi|301638765|gb|ADK84087.1| ribonuclease III [Desulfarculus baarsii DSM 2075]
          Length = 237

 Score =  134 bits (338), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 86/218 (39%), Positives = 122/218 (55%), Gaps = 15/218 (6%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDS 65
           L  ++G+ F++ + L++AL HSS  H   +   S ERLEFLGD +L L+++  LF  FD 
Sbjct: 12  LADQVGHGFSDWTALDEALRHSSFVHENPQRGPSNERLEFLGDAVLELVVTQELFLRFDQ 71

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A EG+LS   +S+V+    ++ AR++DL   I +    +       TSI AD +E+++AA
Sbjct: 72  ASEGQLSRARSSVVNEARLAEAARQIDLGPCILLGKGEQGQGGQEKTSILADALEAVLAA 131

Query: 126 LYLDGGIEVAGTFV-------DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +YLDGG+E A   V       D+    RA      RRD KT LQE       +TP Y+  
Sbjct: 132 VYLDGGLEAARDCVLALLGPLDERVIDRAP-----RRDYKTMLQERVQEDLRLTPRYRTI 186

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             SGPDHD  F+V +EI+    A G   SK+ AEQ AA
Sbjct: 187 DESGPDHDKTFSVSIEINDRQLAMGAGKSKKEAEQNAA 224


>gi|162147937|ref|YP_001602398.1| ribonuclease III [Gluconacetobacter diazotrophicus PAl 5]
 gi|209542555|ref|YP_002274784.1| Ribonuclease III [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786514|emb|CAP56096.1| putative ribonuclease III [Gluconacetobacter diazotrophicus PAl 5]
 gi|209530232|gb|ACI50169.1| Ribonuclease III [Gluconacetobacter diazotrophicus PAl 5]
          Length = 249

 Score =  134 bits (337), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 84/231 (36%), Positives = 125/231 (54%), Gaps = 17/231 (7%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISH---------SYQE-------SYERLEFLGDRI 50
           +++E R+GY F    LL +ALTH S +H         S Q        S ERLEF+GDR+
Sbjct: 14  ASVEARVGYRFRRPDLLREALTHRSAAHQRNGGGARRSRQPAARRGAGSNERLEFIGDRV 73

Query: 51  LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110
           LGL+++  L   F   +EG L  R   LVS    + +A  ++L   + V+    +     
Sbjct: 74  LGLVMAEWLLERFPDEQEGALGPRHAHLVSRPVLAAIAGTMNLQQALDVAEHEARAGVRQ 133

Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170
           + ++ AD VE+++ A+YLDGG+E A  FV   W +  +   +  +D KT LQEW  A+  
Sbjct: 134 VANVLADAVEAILGAIYLDGGLEPARRFVRAAWNEAIVAQAQPPKDPKTALQEWVLARGL 193

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             P Y+     GP H PRF + V  +G + A+G+  SKRAAE  AAA++L+
Sbjct: 194 PLPAYRTVQMDGPSHAPRFVIAVTAAGQS-AEGIAGSKRAAESAAAADLLR 243


>gi|319789592|ref|YP_004151225.1| ribonuclease III [Thermovibrio ammonificans HB-1]
 gi|317114094|gb|ADU96584.1| ribonuclease III [Thermovibrio ammonificans HB-1]
          Length = 236

 Score =  134 bits (337), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 85/224 (37%), Positives = 126/224 (56%), Gaps = 10/224 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE+ +GY+F ++ LL++AL H S +      E+YE LEFLGD ++GL++S  L   F   
Sbjct: 10  LERLLGYSFKDKELLKRALIHRSFAFEKDTGENYEVLEFLGDAVIGLIVSEELIKRFPEK 69

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS     LVS  + S++AR ++L  F+ +    ++       SI  DV ES+  AL
Sbjct: 70  SEGELSQIRAFLVSEPSLSKLARTINLGQFLYLGKGEKRTGGREKDSILCDVFESVFGAL 129

Query: 127 YLDGGIEVA-----GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           YLD G E A       F+ K W+   L++    +D K+ LQE    ++ V P+Y+V    
Sbjct: 130 YLDAGFEKAKEIFKNKFLKKLWE--ILENAVTYKDFKSYLQEITQREYKVLPKYRVVKAE 187

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           GP+HD  FTV  +++ +    G   SK+AAEQ AA E+LK  G+
Sbjct: 188 GPEHDKTFTVECQVNDIT-TYGKGKSKKAAEQDAAREMLKALGV 230


>gi|197119571|ref|YP_002139998.1| ribonuclease III [Geobacter bemidjiensis Bem]
 gi|197088931|gb|ACH40202.1| ribonuclease III [Geobacter bemidjiensis Bem]
          Length = 232

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/224 (39%), Positives = 127/224 (56%), Gaps = 11/224 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           +E R+GY F++R LL +ALTH + ++ +     +RLEF GD +L  L+S +L   F  ++
Sbjct: 12  IEGRLGYRFSDRGLLVEALTHRTYVNEAGGRDNQRLEFFGDAVLDFLLSDMLLVRFPDSR 71

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EGEL+    +LV   +  ++A ELDL   +R+     K       S+ AD  E+L+AALY
Sbjct: 72  EGELTRIRAALVDEASLGKIASELDLGQALRLGRGEEKGGGRQKRSLLADAFEALLAALY 131

Query: 128 LDGGIEVAGTFVDKYW----KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           LDGG++ A   V+  +      R L SG   RDAKTELQE A    G  P Y++   +GP
Sbjct: 132 LDGGLDPARRVVEALFAPLLSSRDLLSG---RDAKTELQETARLFKGELPRYQLKQVTGP 188

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE---VLKREG 224
           DHD RFTV V +      +G+  +K+ AEQ AA     +LK EG
Sbjct: 189 DHDKRFTVEVYLGEELMGEGVGRTKKEAEQDAARAAFLLLKGEG 232


>gi|308048449|ref|YP_003912015.1| RNAse III [Ferrimonas balearica DSM 9799]
 gi|307630639|gb|ADN74941.1| RNAse III [Ferrimonas balearica DSM 9799]
          Length = 224

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/225 (36%), Positives = 126/225 (56%), Gaps = 6/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+  + + L+  +GY F + +LL +ALTH S +  + E   RLE+LGD +L  +I+  L+
Sbjct: 1   MNNQKLTRLQDALGYQFKDIALLNQALTHRSAASQHNE---RLEYLGDAVLSFVIAEALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG+++    SLV   T +++ REL L   I++     K       SI AD VE
Sbjct: 58  LRFPKVAEGDMTRMRASLVKGVTLAELGRELALGDVIKLGPGELKSGGFRRESILADAVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +++ A+YLDGGIEV    + + ++ R   ++ G  ++D KT LQE   A+    PEY+V 
Sbjct: 118 AILGAVYLDGGIEVCKPLILRLYQARLDIIEPGIRQKDPKTRLQEHLQARKQPLPEYEVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222
              G  H+ RFTV   +S LA P  G   S+R AEQ AA+ VL++
Sbjct: 178 SVEGDAHNQRFTVRCSVSALAEPMIGNGSSRRKAEQDAASRVLEQ 222


>gi|319957798|ref|YP_004169061.1| rnase iii [Nitratifractor salsuginis DSM 16511]
 gi|319420202|gb|ADV47312.1| RNAse III [Nitratifractor salsuginis DSM 16511]
          Length = 226

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/221 (37%), Positives = 122/221 (55%), Gaps = 8/221 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y  LE+R+GY F N  L+ +ALTH S    Y    ERLEFLGD +L L++   LF+ F  
Sbjct: 4   YHELERRLGYEFKNPQLIVEALTHKSYKKPYNN--ERLEFLGDAVLDLIVGEFLFHKFPQ 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           + EG LS    SLV+    + +AR +DL  +I +S     +      S+ ++  E++I A
Sbjct: 62  SDEGVLSKIRASLVNESGFATLARAIDLGRYIYLSPAEENNQGRSKPSLLSNAFEAVIGA 121

Query: 126 LYLDGGIEVAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +YL+ G+E A + V    D+ + +  L +    +D KT LQE   A  GVTP+Y++   S
Sbjct: 122 IYLEAGLENARSIVVRLLDETYPRIDLDT--LCKDYKTALQELTQATHGVTPDYEMIGSS 179

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           GPDH   F V V++ G   A     SK+AA+Q AA   L++
Sbjct: 180 GPDHRKEFEVAVKLDGETIASAKGRSKKAAQQKAAEIALQK 220


>gi|237752001|ref|ZP_04582481.1| ribonuclease III [Helicobacter winghamensis ATCC BAA-430]
 gi|229376568|gb|EEO26659.1| ribonuclease III [Helicobacter winghamensis ATCC BAA-430]
          Length = 223

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/210 (35%), Positives = 120/210 (57%), Gaps = 4/210 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            EK +GY F  ++LL++ALTH S         ERLEFLGD +L L+I   L+N F +++E
Sbjct: 7   FEKTLGYHFKAQNLLKEALTHKSAKKGTHN--ERLEFLGDAVLDLIIGEFLYNKFPNSRE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELS    S+V+ +  +++AR L++  ++ +S+   ++      SI ++  E++I A+YL
Sbjct: 65  GELSKMRASMVNEKAFAKIARYLNIGEYLFISNSEEQNNGRKKDSILSNAFEAVIGAIYL 124

Query: 129 DGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           + G+++A   +         ++       D KT LQE   AKFG TPEY +   SGPDH+
Sbjct: 125 ESGLDIARNLMHNLLSAVYPSIDLNSLFYDHKTALQELTQAKFGETPEYVLLDSSGPDHN 184

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             F + V+I G   A+    SK+ A+Q+ A
Sbjct: 185 KNFLIGVKIQGKEFAKASGKSKKEAQQICA 214


>gi|197303071|ref|ZP_03168119.1| hypothetical protein RUMLAC_01798 [Ruminococcus lactaris ATCC
           29176]
 gi|197297926|gb|EDY32478.1| hypothetical protein RUMLAC_01798 [Ruminococcus lactaris ATCC
           29176]
          Length = 229

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/220 (38%), Positives = 116/220 (52%), Gaps = 5/220 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESY---ERLEFLGDRILGLLISTLLF 60
           R   LEK+IGY F N  LLE+A+ HSS ++  + E Y   ERLEFLGD +L L+ S  LF
Sbjct: 4   RLKELEKKIGYTFENHKLLERAMMHSSYTNEKHLEKYRCNERLEFLGDAVLELISSEYLF 63

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                  EGEL+    S+V   + +  AR++DL S++ +             SI +D +E
Sbjct: 64  GELPRVSEGELTKTRASMVCEPSLAMCARDIDLGSYLLLGKGEEATGGRMRDSITSDAME 123

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +LI A+YLDGG   A  F+ ++     L+  K   D+KT LQE   A       Y++   
Sbjct: 124 ALIGAIYLDGGFTSAKEFIHRFI-LTDLEDKKLFYDSKTILQEIVQANKAGNITYELVGE 182

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            GPDH+  F V V I G     G   SK+AAEQ AA + +
Sbjct: 183 EGPDHNKTFEVRVRIGGQPYGSGKGRSKKAAEQKAAYQAI 222


>gi|91227852|ref|ZP_01262025.1| ribonuclease III [Vibrio alginolyticus 12G01]
 gi|269965785|ref|ZP_06179882.1| Ribonuclease 3 [Vibrio alginolyticus 40B]
 gi|91188362|gb|EAS74658.1| ribonuclease III [Vibrio alginolyticus 12G01]
 gi|269829653|gb|EEZ83890.1| Ribonuclease 3 [Vibrio alginolyticus 40B]
          Length = 225

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/217 (36%), Positives = 120/217 (55%), Gaps = 6/217 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE+++GY F +  L+  ALTH S +  + E   RLEFLGD IL  +I+  L++ F    E
Sbjct: 8   LERKLGYQFQDAGLINLALTHRSANSKHNE---RLEFLGDSILSFVIADDLYHRFPKVNE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G++S    +LV   T +++ RE DL  ++++     K       SI AD VE++I A+YL
Sbjct: 65  GDMSRMRATLVRGHTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAIYL 124

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D  +EV    V  +++ R  A+K G  ++D KT LQE+   +    P Y VT   G  H+
Sbjct: 125 DSDLEVVRGIVLSWYQSRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEAHN 184

Query: 187 PRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222
             FTV  E++G+  P  G   S+R AEQ AA   L++
Sbjct: 185 QEFTVECEVAGVDKPVIGKGTSRRKAEQAAAETALEQ 221


>gi|42523419|ref|NP_968799.1| ribonuclease III [Bdellovibrio bacteriovorus HD100]
 gi|81617308|sp|Q6MLR5|RNC_BDEBA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|39575625|emb|CAE79792.1| ribonuclease III [Bdellovibrio bacteriovorus HD100]
          Length = 234

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/220 (36%), Positives = 120/220 (54%), Gaps = 6/220 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFD 64
           +LE+R+G+ F N +LLE+ALTH S ++  +   E  E+LEFLGD +L L++   L+  F 
Sbjct: 8   SLEERVGHQFKNPALLERALTHKSFANELRNTVEHNEKLEFLGDAVLDLVVGEFLYEKFP 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EG LS +  S+V+ E  S++A E+ L   +++         +    + A   E+++ 
Sbjct: 68  TDTEGGLSKKRASIVNEEVLSELALEMGLNKLMQLGKGEALTGGAQKPRLIASSFEAIVG 127

Query: 125 ALYLDGGIEVAGTFVDKYW---KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           ALYLDGG EVA +F+ + +     R      F RD KT LQE        TP Y+V    
Sbjct: 128 ALYLDGGFEVARSFIRQEFVPLADRVCGHEDFERDYKTRLQELVQKSSKETPRYEVLAEE 187

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           GP HD  F V V++     AQG   SK+ AEQ+AA   L+
Sbjct: 188 GPPHDREFLVCVKVKEDVWAQGRGRSKKNAEQMAAKNALE 227


>gi|258541744|ref|YP_003187177.1| ribonuclease III [Acetobacter pasteurianus IFO 3283-01]
 gi|256632822|dbj|BAH98797.1| ribonuclease III [Acetobacter pasteurianus IFO 3283-01]
 gi|256635879|dbj|BAI01848.1| ribonuclease III [Acetobacter pasteurianus IFO 3283-03]
 gi|256638934|dbj|BAI04896.1| ribonuclease III [Acetobacter pasteurianus IFO 3283-07]
 gi|256641988|dbj|BAI07943.1| ribonuclease III [Acetobacter pasteurianus IFO 3283-22]
 gi|256645043|dbj|BAI10991.1| ribonuclease III [Acetobacter pasteurianus IFO 3283-26]
 gi|256648098|dbj|BAI14039.1| ribonuclease III [Acetobacter pasteurianus IFO 3283-32]
 gi|256651151|dbj|BAI17085.1| ribonuclease III [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654142|dbj|BAI20069.1| ribonuclease III [Acetobacter pasteurianus IFO 3283-12]
          Length = 238

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 85/229 (37%), Positives = 121/229 (52%), Gaps = 12/229 (5%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-----------SYERLEFLGDRILGL 53
           R   LE R+GY F N  LL++ALTH S +H               S ERLEF+GDR+LGL
Sbjct: 8   RLEELEVRLGYRFVNPDLLQEALTHRSAAHQKAGGRKRQKAKGAGSNERLEFIGDRVLGL 67

Query: 54  LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
           L++  L   F + +EG L  R   LVS  + +++A  LDL   + V++   +       +
Sbjct: 68  LMAEWLLERFPNEQEGALGSRLAHLVSRVSLAEIADRLDLPQSLTVAAHEARAGVQTAAN 127

Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP 173
           + AD +E+++ A++LDGG+E A   V  +WK          +D KT LQEW   +    P
Sbjct: 128 VVADALEAVLGAVFLDGGLEPARQMVRDWWKSALDAQAHPPKDPKTALQEWVLGRGQSLP 187

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            Y+     GP H P F V V   GL   +G   SKRAAE  AAA++L++
Sbjct: 188 VYETIGADGPSHAPLFVVRVTAGGLF-GEGRAGSKRAAESAAAADLLEK 235


>gi|282892110|ref|ZP_06300585.1| hypothetical protein pah_c207o041 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498005|gb|EFB40349.1| hypothetical protein pah_c207o041 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 236

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 84/225 (37%), Positives = 120/225 (53%), Gaps = 8/225 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           S +E R+GY F +R LL  A  H S    +    E  ERLEFLGD +LGLLI+  L+ + 
Sbjct: 12  SNIELRLGYKFQDRDLLALAFVHRSFINENREIHEHNERLEFLGDSVLGLLIADYLYRYL 71

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            S  EGELS   + LV A +C     +LDL  F+ +    R +      SI AD++E++I
Sbjct: 72  PSTPEGELSYLKSRLVEASSCVTYIHKLDLEQFLLLGRGERMNDGRGRESILADLLEAII 131

Query: 124 AALYLDGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            A+YLDGG+E A  F+ K +    +  LK+    R+ K  LQ++   K+  TP Y V   
Sbjct: 132 GAVYLDGGLESAKAFLFKNFSTEIEAILKTPV--RNWKALLQDYCQKKYQTTPSYHVIDE 189

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            GPDH   F + V ++     +G   SK+ A+Q AA + L +  I
Sbjct: 190 KGPDHSKTFKISVFLNDEEVGKGEGGSKKEAQQKAAEDALSKMDI 234


>gi|254230524|ref|ZP_04923895.1| ribonuclease III [Vibrio sp. Ex25]
 gi|262393270|ref|YP_003285124.1| ribonuclease III [Vibrio sp. Ex25]
 gi|151936949|gb|EDN55836.1| ribonuclease III [Vibrio sp. Ex25]
 gi|262336864|gb|ACY50659.1| ribonuclease III [Vibrio sp. Ex25]
          Length = 225

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 80/217 (36%), Positives = 119/217 (54%), Gaps = 6/217 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE+++GY F +  L+  ALTH S +  + E   RLEFLGD IL  +I+  L++ F    E
Sbjct: 8   LERKLGYQFQDAGLINLALTHRSANSKHNE---RLEFLGDSILSFVIADDLYHRFPKVNE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G++S    +LV   T +++ RE DL  ++++     K       SI AD VE++I A+YL
Sbjct: 65  GDMSRMRATLVRGHTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAIYL 124

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D  +EV    V  ++  R  A+K G  ++D KT LQE+   +    P Y VT   G  H+
Sbjct: 125 DSDLEVVRGIVLSWYNSRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEAHN 184

Query: 187 PRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222
             FTV  E++G+  P  G   S+R AEQ AA   L++
Sbjct: 185 QEFTVECEVAGVDKPVIGKGTSRRKAEQAAAETALEQ 221


>gi|1228146|gb|AAA92440.1| RNase III [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 224

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/226 (36%), Positives = 122/226 (53%), Gaps = 7/226 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S  + E   RLEFLGD IL  +I+  L 
Sbjct: 1   MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKHNE---RLEFLGDSILSFVIANAL- 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S   + LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 57  SRFPRVDEGDMSRMRDPLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  ++K R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 117 ALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 176

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKRE 223
              G  HD  FT+  ++SGL+ P  G   S+R AEQ AA  V K E
Sbjct: 177 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAANSVKKLE 222


>gi|239993708|ref|ZP_04714232.1| ribonuclease III [Alteromonas macleodii ATCC 27126]
          Length = 228

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 120/221 (54%), Gaps = 6/221 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +Y  L K IGY F N +LLE+ALTH S +  + E   RLEFLGD ILG+++   LF  F 
Sbjct: 6   KYRRLYKAIGYTFTNEALLEQALTHRSAAKQHNE---RLEFLGDAILGMIVGETLFKRFP 62

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EG+L+   ++LV  +T +++A+E  +   + +     K      +SI AD VE+++ 
Sbjct: 63  TVPEGKLTRMRSTLVKGDTLAELAKEASVGELLNLGPGELKSGGHRRSSILADAVEAILG 122

Query: 125 ALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YLD G++     +D+ W+ R   L      +D+KT LQE+   +    P Y+V   SG
Sbjct: 123 AIYLDSGMDEVRGVIDRLWETRINKLDPNAHPKDSKTRLQEFLQGRKQALPTYEVLSISG 182

Query: 183 PDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKR 222
            DH   F V  ++  L  A      S+R AEQ AA   L++
Sbjct: 183 KDHAQTFEVSCQVESLPEAVVASGNSRRKAEQEAARLTLEK 223


>gi|28899346|ref|NP_798951.1| ribonuclease III [Vibrio parahaemolyticus RIMD 2210633]
 gi|153839958|ref|ZP_01992625.1| ribonuclease III [Vibrio parahaemolyticus AQ3810]
 gi|260365941|ref|ZP_05778431.1| ribonuclease III [Vibrio parahaemolyticus K5030]
 gi|260878963|ref|ZP_05891318.1| ribonuclease III [Vibrio parahaemolyticus AN-5034]
 gi|260898320|ref|ZP_05906816.1| ribonuclease III [Vibrio parahaemolyticus Peru-466]
 gi|31076860|sp|Q87LN9|RNC_VIBPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|28807582|dbj|BAC60835.1| ribonuclease III [Vibrio parahaemolyticus RIMD 2210633]
 gi|149746517|gb|EDM57506.1| ribonuclease III [Vibrio parahaemolyticus AQ3810]
 gi|308085245|gb|EFO34940.1| ribonuclease III [Vibrio parahaemolyticus Peru-466]
 gi|308090440|gb|EFO40135.1| ribonuclease III [Vibrio parahaemolyticus AN-5034]
 gi|308113210|gb|EFO50750.1| ribonuclease III [Vibrio parahaemolyticus K5030]
 gi|328474121|gb|EGF44926.1| ribonuclease III [Vibrio parahaemolyticus 10329]
          Length = 225

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 80/217 (36%), Positives = 119/217 (54%), Gaps = 6/217 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE+++GY F +  L+  ALTH S +  + E   RLEFLGD IL  +I+  L++ F    E
Sbjct: 8   LERKLGYQFKDAGLINLALTHRSANSKHNE---RLEFLGDSILSFVIADDLYHRFPKVNE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G++S    +LV   T +++ RE DL  ++++     K       SI AD VE++I A+YL
Sbjct: 65  GDMSRMRATLVRGHTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAIYL 124

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D  IE   + V  ++  R  A+K G  ++D KT LQE+   +    P Y VT   G  H+
Sbjct: 125 DSDIEKVRSIVLSWYNSRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEAHN 184

Query: 187 PRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222
             FTV  E++G+  P  G   S+R AEQ AA   L++
Sbjct: 185 QEFTVECEVAGVDKPVIGKGTSRRKAEQAAAETALEQ 221


>gi|220928138|ref|YP_002505047.1| ribonuclease III [Clostridium cellulolyticum H10]
 gi|219998466|gb|ACL75067.1| ribonuclease III [Clostridium cellulolyticum H10]
          Length = 236

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 85/232 (36%), Positives = 121/232 (52%), Gaps = 10/232 (4%)

Query: 1   MSALRY----STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILG 52
           M+ +RY    S LE  IGY F N+ ++  A+THSS ++  +    +  ERLEFLGD +LG
Sbjct: 1   MAEIRYDNRISELEDIIGYTFKNKDIIFAAVTHSSYANEKKSRKLKYNERLEFLGDSVLG 60

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
           L IS  LF    +  EGELSV    +V   + SQ A ++ L  ++ +             
Sbjct: 61  LTISEYLFQKKPNLPEGELSVTRAKIVCENSLSQCATDIGLGKYLLLGKGEELSGGREKI 120

Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFG 170
           S+ +D  E+LI ALY+DGG E A +F+ +Y  +  ++   GK   D KT+LQE       
Sbjct: 121 SLLSDAFEALIGALYIDGGFETAKSFIYRYMDKIIKSCIEGKLFYDYKTQLQELVQQNGE 180

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
               Y VT + GPDH+  F   V+I+G    +G   SK+ AEQ AA   L  
Sbjct: 181 QQITYSVTDQFGPDHNKTFITEVKINGAIQGRGKGHSKKEAEQNAAKNALNN 232


>gi|34558193|ref|NP_908008.1| ribonuclease III [Wolinella succinogenes DSM 1740]
 gi|81653364|sp|Q7M840|RNC_WOLSU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|34483912|emb|CAE10908.1| RIBONUCLEASE III [Wolinella succinogenes]
          Length = 238

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 84/212 (39%), Positives = 116/212 (54%), Gaps = 8/212 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            EKR+GY F N++LL +ALTH S    Y    ERLEFLGD +L L+I   LF  F  A E
Sbjct: 7   FEKRLGYRFQNKNLLIEALTHKSYKKPYNN--ERLEFLGDAVLDLVIGEFLFLKFPKADE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELS    SLV+ +  +++A  + L   I +S+    +      S+ ++  E+ + A+YL
Sbjct: 65  GELSKMRASLVNEKGFAKLAERVSLGRHIFISNAEENNKGREKPSLLSNAFEATMGAIYL 124

Query: 129 DGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           + G+    EV    +D+ + +  L  G   RD KT LQE   AKFG TPEY +   SGPD
Sbjct: 125 ETGLSVVREVVHRLLDEVYPKIDL--GSLFRDYKTALQELTQAKFGETPEYVILGSSGPD 182

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           H   F V V + G   A+    SK+ A+Q AA
Sbjct: 183 HKKEFEVAVCVLGSEYARACGSSKKEAQQEAA 214


>gi|332141899|ref|YP_004427637.1| ribonuclease III [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551921|gb|AEA98639.1| ribonuclease III [Alteromonas macleodii str. 'Deep ecotype']
          Length = 228

 Score =  132 bits (331), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 81/225 (36%), Positives = 121/225 (53%), Gaps = 14/225 (6%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +Y  L K IGY F N +LLE+ALTH S +  + E   RLEFLGD ILG++I   LF  F 
Sbjct: 6   KYLRLYKAIGYTFNNEALLEQALTHRSAAKQHNE---RLEFLGDAILGMIIGETLFKRFP 62

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EG+L+   ++LV  +T +++A+E  +   + +     K      +SI AD VE+++ 
Sbjct: 63  TVPEGKLTRMRSTLVKGDTLAELAKEASVGELLNLGPGELKSGGHRRSSILADAVEAILG 122

Query: 125 ALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YLD G++     +D+ W+ R   L      +D+KT LQE+   +    P Y+V   SG
Sbjct: 123 AIYLDSGMDEVRGVIDRLWESRINQLDPNAHPKDSKTRLQEFLQGRKQALPTYEVLSISG 182

Query: 183 PDHDPRFTVVVEISGL-----APAQGMDCSKRAAEQVAAAEVLKR 222
            DH   F V  ++  L     AP      S+R AEQ AA   L++
Sbjct: 183 KDHAQTFEVCCKVESLPDAVVAPGN----SRRKAEQEAARLTLEK 223


>gi|332140432|ref|YP_004426170.1| ribonuclease III [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550454|gb|AEA97172.1| ribonuclease III [Alteromonas macleodii str. 'Deep ecotype']
          Length = 228

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 120/221 (54%), Gaps = 6/221 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +Y  L K IGY F N +LLE+ALTH S +  + E   RLEFLGD ILG++I   LF  F 
Sbjct: 6   KYLRLYKAIGYTFNNEALLEQALTHRSAAKQHNE---RLEFLGDAILGMIIGETLFKRFP 62

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EG+L+   ++LV  +T +++A+E  +   + +     K      +SI AD VE+++ 
Sbjct: 63  TVPEGKLTRMRSTLVKGDTLAELAKEASVGELLNLGPGELKSGGHRRSSILADAVEAILG 122

Query: 125 ALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YLD G++     +D+ W+ R   L      +D+KT LQE+   +    P Y+V   SG
Sbjct: 123 AIYLDSGMDEVRGVIDRLWESRINQLDPNAHPKDSKTRLQEFLQGRKQALPTYEVLSISG 182

Query: 183 PDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKR 222
            DH   F V  ++  L  A      S+R AEQ AA   L++
Sbjct: 183 KDHAQTFEVCCKVESLPDAVVASGNSRRKAEQEAARLTLEK 223


>gi|83644632|ref|YP_433067.1| ribonuclease III [Hahella chejuensis KCTC 2396]
 gi|123534042|sp|Q2SL32|RNC_HAHCH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|83632675|gb|ABC28642.1| ribonuclease III [Hahella chejuensis KCTC 2396]
          Length = 226

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 85/220 (38%), Positives = 120/220 (54%), Gaps = 6/220 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L++ +GY F   +LL  ALTH S       + ERLEFLGD +L  +I+  LF  F+ A+E
Sbjct: 8   LQRALGYTFKEPALLTLALTHRSFGG---RNNERLEFLGDSVLNFIIADYLFGRFEEARE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS     +V   T +++ARE DL  ++R+ S   K       SI AD +ES+I A+YL
Sbjct: 65  GQLSRLRARMVKGVTLAEIAREFDLGEYLRLGSGEMKSGGFRRESILADALESIIGAIYL 124

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D G EV    V  +++ R   L     ++D+KT LQE+  A+    P Y+V    G  H 
Sbjct: 125 DAGFEVCADRVLNWFEARLQKLNLKDTQKDSKTRLQEYLQARQLNLPRYEVISVQGEAHA 184

Query: 187 PRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREGI 225
             F V  EI GL+ A +G   S+R AEQ AA + L   G+
Sbjct: 185 QTFHVRCEIDGLSDATEGTGSSRRVAEQKAAKQALLALGV 224


>gi|153005020|ref|YP_001379345.1| ribonuclease III [Anaeromyxobacter sp. Fw109-5]
 gi|152028593|gb|ABS26361.1| Ribonuclease III [Anaeromyxobacter sp. Fw109-5]
          Length = 377

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 81/218 (37%), Positives = 118/218 (54%), Gaps = 9/218 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE-----SYERLEFLGDRILGLLISTLLFN 61
           +TLE R+G    +RS    ALTH S  + +++       ERLEFLGD ++ L +S  L  
Sbjct: 18  ATLEARLGLCLGDRSTALAALTHKSYVNEHRDEPGLGDNERLEFLGDAVIDLAVSHRLME 77

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F +A+EG+LS    ++V  +  S++AR LDL S +R+             S+ AD +E+
Sbjct: 78  RFPAAREGDLSKMRAAVVDEQGLSEMARALDLGSLLRLGRGEELTGGRRKASLLADAMEA 137

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++AALYLD G+      +D++      RA  +G   RD KT+LQE A ++   TP Y+V 
Sbjct: 138 VVAALYLDAGLAPVLVLIDRFLGDAFARA-AAGTLDRDFKTQLQELAQSRVRATPRYRVV 196

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
              GPDH   F V  E+ G    +G   SK+ AEQ AA
Sbjct: 197 GEHGPDHSKTFEVETELRGEVVGRGTGRSKKDAEQAAA 234


>gi|329114470|ref|ZP_08243232.1| Ribonuclease 3 [Acetobacter pomorum DM001]
 gi|326696546|gb|EGE48225.1| Ribonuclease 3 [Acetobacter pomorum DM001]
          Length = 253

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 84/229 (36%), Positives = 121/229 (52%), Gaps = 12/229 (5%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-----------SYERLEFLGDRILGL 53
           R   LE R+GY F N  LL++ALTH S +H               S ERLEF+GDR+LGL
Sbjct: 23  RLEELEVRLGYRFVNPDLLQEALTHRSAAHQKAGGRKRQKAKGAGSNERLEFIGDRVLGL 82

Query: 54  LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
           L++  L   F + +EG L  R   LVS  + +++A  LDL   + V++   +       +
Sbjct: 83  LMAEWLLERFPNEQEGALGSRLAHLVSRVSLAEIADRLDLPQSLTVAAHEARAGVQTAAN 142

Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP 173
           + AD +E+++ A++LDGG+E A   V  +W+          +D KT LQEW   +    P
Sbjct: 143 VVADALEAVLGAVFLDGGLEPARQMVRDWWRSALDAQAHPPKDPKTALQEWVLGRGQSLP 202

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            Y+     GP H P F V V   GL   +G   SKRAAE  AAA++L++
Sbjct: 203 VYETIGADGPSHAPLFVVRVTAGGLF-GEGRAGSKRAAESAAAADLLEK 250


>gi|91794117|ref|YP_563768.1| ribonuclease III [Shewanella denitrificans OS217]
 gi|123165871|sp|Q12KI1|RNC_SHEDO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|91716119|gb|ABE56045.1| RNAse III [Shewanella denitrificans OS217]
          Length = 226

 Score =  131 bits (330), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 82/216 (37%), Positives = 121/216 (56%), Gaps = 6/216 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L + +GY F N+ LL +ALTH S ++ + E   RLEFLGD IL ++IS  L++ F  A E
Sbjct: 10  LSRTLGYEFTNQELLVQALTHRSAANKHNE---RLEFLGDSILSIVISDALYHQFPKATE 66

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    +LV  ET + +A+E  L  ++ +     K       SI AD VE++I A+YL
Sbjct: 67  GDLSRMRATLVKGETLTLIAKEFKLGDYLFLGPGELKSGGFRRESILADAVEAIIGAVYL 126

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D  ++   T +  ++K R   +K G  ++D KT LQE+        P+Y+V    G  HD
Sbjct: 127 DANMQACETLLLSWYKVRLDEIKPGINQKDPKTILQEYLQGYKKPLPDYQVVQVDGEAHD 186

Query: 187 PRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221
             FTV   I  L     G+  S+R AEQ+AAA++L+
Sbjct: 187 QTFTVECRIQDLDEVVTGVGSSRRKAEQLAAAQILE 222


>gi|332992353|gb|AEF02408.1| ribonuclease III [Alteromonas sp. SN2]
          Length = 229

 Score =  131 bits (330), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 80/215 (37%), Positives = 115/215 (53%), Gaps = 6/215 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +Y  L K +GY F N +LLE+ALTH S +  + E   RLEFLGD ILG++I   LF  F 
Sbjct: 6   KYIRLSKALGYTFNNVALLEQALTHRSAAKQHNE---RLEFLGDAILGMVIGETLFKRFP 62

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+L+   ++LV  +T +++ARE  +   + +     K      +SI AD VE+++ 
Sbjct: 63  DVPEGKLTRMRSTLVKGDTLAELAREASMGELLHLGPGELKSGGHRRSSILADAVEAVLG 122

Query: 125 ALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YLD G+E     +   W+ R  AL      +D+KT LQE+   +    P Y+V   SG
Sbjct: 123 AIYLDSGMEEVCNVIYHLWESRIEALNPNAHPKDSKTRLQEYLQGRKLPLPSYEVISISG 182

Query: 183 PDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAA 216
            DH   F V   ++ L  P      S+R AEQ AA
Sbjct: 183 KDHAQVFEVSCTVTTLDKPVSASGNSRRKAEQEAA 217


>gi|149910155|ref|ZP_01898801.1| ribonuclease III [Moritella sp. PE36]
 gi|149806741|gb|EDM66705.1| ribonuclease III [Moritella sp. PE36]
          Length = 223

 Score =  131 bits (330), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 83/217 (38%), Positives = 120/217 (55%), Gaps = 6/217 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L+  +GY + +  LL++ALTH S   +Y +  ERLEFLGD +LG +IS  LF  F    E
Sbjct: 8   LQTVLGYQYQDAGLLQQALTHRS---AYYKHNERLEFLGDSVLGFIISDALFRQFPEVPE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    +LV   T +++ARE +L+  + +     K       SI AD VE+LI A+YL
Sbjct: 65  GDLSRMRATLVKGLTLAEIAREFELSECLILGPGELKSGGFRRESILADTVEALIGAMYL 124

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D  IE     V  ++  R   ++ G  ++DAKT+LQEW   +    P Y+V    G  H+
Sbjct: 125 DSDIEKTRERVLAWYASRLATIEPGIGQKDAKTQLQEWLQGRKQPLPLYQVVEVRGEAHN 184

Query: 187 PRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222
             FT+   I GL  P +G   S+R AEQ AA + L++
Sbjct: 185 QEFTIHCVIEGLDHPVEGKGTSRRKAEQEAAQKALEQ 221


>gi|222055246|ref|YP_002537608.1| Ribonuclease III [Geobacter sp. FRC-32]
 gi|221564535|gb|ACM20507.1| Ribonuclease III [Geobacter sp. FRC-32]
          Length = 238

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 82/220 (37%), Positives = 126/220 (57%), Gaps = 10/220 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLLFNH 62
           + LEK I Y F ++SLL +ALTH S  +      ++  +RLEFLGD ++GL++S  LF+ 
Sbjct: 10  AALEKLINYDFTDKSLLVEALTHPSFVNESGGKVRQDNQRLEFLGDAVVGLVLSHDLFSR 69

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F  ++EGEL+    SLV   + + +AR +DL + +++     +       S+ AD  E+L
Sbjct: 70  FPDSREGELTKLRASLVDEASLAILARAIDLGAHLKLGRGEERSGGRTKPSLLADAYEAL 129

Query: 123 IAALYLDGGIEVAGTFVDKYW----KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +AA+YLDGGIE A   +  ++    ++R +++    RD KTE QE AH    + P Y + 
Sbjct: 130 LAAVYLDGGIEPAAAIIKSHFASFMEKRNIRTSG--RDFKTEFQELAHRLRSLAPRYLLQ 187

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
             SGPDH   F+V V I      +G+  SK+ AEQ AA +
Sbjct: 188 GVSGPDHQRIFSVAVFIGEEFMGEGLAKSKKEAEQAAAEQ 227


>gi|257093153|ref|YP_003166794.1| Ribonuclease III [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257045677|gb|ACV34865.1| Ribonuclease III [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 223

 Score =  131 bits (329), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 84/217 (38%), Positives = 117/217 (53%), Gaps = 6/217 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S LE+ +GY F +R+LL+ ALTH S S  + E   RLEFLGD IL  +I+  LF  F + 
Sbjct: 4   SRLERGLGYTFRDRALLQTALTHRSYSSPHNE---RLEFLGDAILNAVIARSLFERFPTL 60

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+LS     LV  +   Q A  L L  F+R+    +K       SI AD +E+L  AL
Sbjct: 61  PEGDLSRLRAQLVRQDGLHQQALALSLGDFLRLGEGEQKSGGQQRPSILADGLEALFGAL 120

Query: 127 YLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           +LD G E AG  +++ ++   + L  G+  +DAKT LQE+   +    P+Y +T   G  
Sbjct: 121 WLDAGFEAAGEVINRLYESMLKQLIPGQGTKDAKTRLQEYLQGRRLALPQYALTGAEGEA 180

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVL 220
           H   FTV   I  L    +G   ++RAAEQ+AA   L
Sbjct: 181 HAQHFTVTCVIDALRIRTEGSGSNRRAAEQIAAERAL 217


>gi|118474451|ref|YP_892860.1| ribonuclease III [Campylobacter fetus subsp. fetus 82-40]
 gi|261885507|ref|ZP_06009546.1| ribonuclease III [Campylobacter fetus subsp. venerealis str.
           Azul-94]
 gi|189043299|sp|A0RRM7|RNC_CAMFF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|118413677|gb|ABK82097.1| ribonuclease III [Campylobacter fetus subsp. fetus 82-40]
          Length = 223

 Score =  131 bits (329), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 127/223 (56%), Gaps = 4/223 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           + + LE+ +GY F N++LL++ALTH S+  S     ERLEFLGD +L L++   LF  F 
Sbjct: 3   KLNRLEEHLGYKFKNKTLLKEALTHKSMKSSVNN--ERLEFLGDAVLDLIVGEYLFFKFK 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG LS    +LV+ ++ + ++ ++ L  F+ +S+    +      S+ +D +E+L+ 
Sbjct: 61  DTDEGNLSKLRAALVNEKSFASISSQIRLGDFLYLSAAEDNNNGRNKPSLVSDALEALMG 120

Query: 125 ALYLDGGIE-VAGTFVDKYWKQ-RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YL+ G+E V   F++    Q   +      +D KT LQE   A+FGVTP Y++   SG
Sbjct: 121 AIYLESGLEAVKKIFINLLESQYNNIDLQSLGKDYKTTLQEITQARFGVTPRYELVSSSG 180

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           PDH   F + V ++    A+ +  SK+ AEQ AA +VL+   I
Sbjct: 181 PDHKKSFEMAVFLNDKELARAIGNSKKEAEQSAAWKVLQGMNI 223


>gi|268680594|ref|YP_003305025.1| ribonuclease III [Sulfurospirillum deleyianum DSM 6946]
 gi|268618625|gb|ACZ12990.1| ribonuclease III [Sulfurospirillum deleyianum DSM 6946]
          Length = 227

 Score =  131 bits (329), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 83/224 (37%), Positives = 121/224 (54%), Gaps = 7/224 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +   L+KR+GY F N++L+ +ALTH S    Y  + ERLEFLGD +L L++   L+  F 
Sbjct: 4   KLEALQKRLGYQFKNQNLIIEALTHKSSKQPY--NNERLEFLGDAVLDLIVGEYLYKEFL 61

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGELS    SLV+ ++  ++AR L L   I +S     +      S+ ++  E++I 
Sbjct: 62  GVAEGELSKLRASLVNEKSFEKLARLLHLGESIYISLAEENNNGREKPSLLSNAFEAIIG 121

Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           ALYL+ G+E A T      ++    +      RD KT LQE   A FGVTPEY++    G
Sbjct: 122 ALYLEAGLEKARTLAISLLEEAYPKIDMDAIFRDHKTTLQELTQAHFGVTPEYRLVRSFG 181

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA---AAEVLKRE 223
           PDH   F + V + G   +     SK+ A+Q A   A E+LK+E
Sbjct: 182 PDHQKEFEIAVSVRGSDLSLASGKSKKEAQQKAALLALEILKKE 225


>gi|160934422|ref|ZP_02081809.1| hypothetical protein CLOLEP_03295 [Clostridium leptum DSM 753]
 gi|156867095|gb|EDO60467.1| hypothetical protein CLOLEP_03295 [Clostridium leptum DSM 753]
          Length = 237

 Score =  131 bits (329), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 86/227 (37%), Positives = 127/227 (55%), Gaps = 12/227 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSIS---HSYQESYERLEFLGDRILGLLISTLLFNH 62
           +  LE+ +GYAF N  LL+ ALTHSS +   H+   S ERLEFLGD +L +++S  +F +
Sbjct: 14  FRRLEENLGYAFQNPKLLKTALTHSSYANEAHNGTRSNERLEFLGDAVLSIVVSDYIFRN 73

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
                EGEL+    SLV  ++  + +R L++ SF+R+S   +    +  +SI AD  E++
Sbjct: 74  CPHLPEGELTKMRASLVCEKSLQRFSRVLEIGSFLRLSRGEQNSGGAERSSILADAFEAV 133

Query: 123 IAALYLDGGIEVAGTFVDKYW-KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF-- 179
           +AA+YLDGG+E A  FV ++   +      K  +D KT LQE         PE K+ +  
Sbjct: 134 LAAIYLDGGMEKAREFVLRFTVPEMENPKPKAFKDYKTALQEIVQQ----NPEEKLNYVL 189

Query: 180 --RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              SGPDH+  F V V ++     +G   SK+ AEQ AA E L+  G
Sbjct: 190 VGESGPDHNKHFVVEVHLNSNVIGKGGGRSKKEAEQQAAREALELMG 236


>gi|71907657|ref|YP_285244.1| ribonuclease III [Dechloromonas aromatica RCB]
 gi|90101622|sp|Q47EF7|RNC_DECAR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|71847278|gb|AAZ46774.1| RNAse III [Dechloromonas aromatica RCB]
          Length = 222

 Score =  131 bits (329), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 80/219 (36%), Positives = 123/219 (56%), Gaps = 10/219 (4%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           ++ K++ + F++++L   ALTH S       + ERLEFLGD +L  +I+  L++ F    
Sbjct: 5   SVAKKLNHCFSDQALFRTALTHRSFG---TPNNERLEFLGDGVLDFVIAASLYHRFPDLP 61

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG+LS    +LV  ET  ++A EL++ +F+R+     K   +   SI AD +E+L  A+Y
Sbjct: 62  EGDLSRLRANLVRQETLHRLALELNIGAFLRLGEGELKSGGAQRPSILADALEALFGAIY 121

Query: 128 LDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           LD G E +   ++K +      LK G+F++DAKT LQEW   +    P Y +   +G  H
Sbjct: 122 LDAGFEASRAVIEKLFAPLLDDLKPGQFQKDAKTRLQEWLQGRKKALPRYHLLEATGAAH 181

Query: 186 DPRFTVVVEISGLAPAQ---GMDCSKRAAEQVAAAEVLK 221
           + RF +  EI   +PA    G   S+R AEQVAA + LK
Sbjct: 182 EQRFEIACEIE--SPALRTVGHGSSRRIAEQVAAEKALK 218


>gi|224368198|ref|YP_002602361.1| two domain fusion protein Includes: metal-dependent phosphoesterase
           / ribonuclease III [Desulfobacterium autotrophicum HRM2]
 gi|223690914|gb|ACN14197.1| two domain fusion protein Includes: metal-dependent phosphoesterase
           / ribonuclease III [Desulfobacterium autotrophicum HRM2]
          Length = 520

 Score =  131 bits (329), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 85/223 (38%), Positives = 118/223 (52%), Gaps = 7/223 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY----ERLEFLGDRILGLLISTLLF 60
           R   LEK +G+ FANR LLE AL HSS  +  Q +     +RLEF+GD +LGL I  +L 
Sbjct: 292 RLEILEKNLGHTFANRELLENALRHSSYVNELQANQVPDNQRLEFMGDAVLGLTIGQILM 351

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                  EG LS    +LVS    + +AR++DL  FIR+    R    S   SI AD  E
Sbjct: 352 EEHPGMNEGSLSKARAALVSEPALASMARQIDLGRFIRLGKGERLSRGSEKNSILADAFE 411

Query: 121 SLIAALYLDGGIEVAGTFV-DKYWKQ-RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +++AA+YLD G +     V +++  Q + + S     D K+ LQE+   K    P Y + 
Sbjct: 412 AVMAAIYLDCGFKQTCALVKEQFISQIKLINSAPEIEDFKSMLQEFVQEKGNTPPCYTIH 471

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              GPDHD  F++ V+   +  + G   SK+AAEQ AA   LK
Sbjct: 472 REFGPDHDKTFSICVKACDIE-SMGSGKSKKAAEQHAAQNALK 513


>gi|302391792|ref|YP_003827612.1| RNAse III [Acetohalobium arabaticum DSM 5501]
 gi|302203869|gb|ADL12547.1| RNAse III [Acetohalobium arabaticum DSM 5501]
          Length = 234

 Score =  131 bits (329), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 79/220 (35%), Positives = 122/220 (55%), Gaps = 6/220 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           L+ +I   FA+  LL++ALTH S ++  ++      ERLEFLGD +L +++S  +FN + 
Sbjct: 13  LQSKIDIYFADLDLLQRALTHKSYANENRDLNLKDNERLEFLGDSVLDIVVSEYMFNRYP 72

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+L+    S+VSA T +  ARELDL  ++ +            +SI AD  E+L+ 
Sbjct: 73  DYPEGKLAKMRASVVSAPTLAAKARELDLGRYLLLGHGEEMTGGRKRSSILADAFEALVG 132

Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           ++YLD  +++A  F+ K  K    + ++G+  RD KT LQE    +    PEY V    G
Sbjct: 133 SIYLDQDLDIAEDFIMKLMKVDIESAEAGEHIRDYKTTLQEMIQKRSNARPEYYVIEEKG 192

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           PDH   FTV V+ +  +  +G   SK+ A+Q AA   LK+
Sbjct: 193 PDHSKEFTVEVKFNDRSLGEGTGSSKKEAQQQAAKNALKK 232


>gi|88606764|ref|YP_505691.1| ribonuclease III [Anaplasma phagocytophilum HZ]
 gi|123494405|sp|Q2GIW0|RNC_ANAPZ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|88597827|gb|ABD43297.1| ribonuclease III [Anaplasma phagocytophilum HZ]
          Length = 236

 Score =  131 bits (329), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 77/211 (36%), Positives = 122/211 (57%), Gaps = 4/211 (1%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           GY F +  LL+ A+TH SI+     SYERLEFLGD +LGL++S +L+  F    EG L+ 
Sbjct: 21  GYRFQDHELLKTAVTHPSIAAERYASYERLEFLGDAVLGLVVSEMLYTLFPDDSEGLLTK 80

Query: 74  RFNSLVSAETCSQVARELDLASFIRVS-SDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
           +  +LV      ++A+ L+L + + +S  +L     S  ++++ + +E+LI A+Y+DGG+
Sbjct: 81  KRIALVRGSKVVEIAQSLNLGNILLMSKGELTSGGISNNSNLE-NALEALIGAIYVDGGL 139

Query: 133 EVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
           E    F+ ++WK  A   +    +DAKT LQEWA       P Y++  +SG +H P FTV
Sbjct: 140 ESVRHFILQHWKPLATNLADTPLQDAKTALQEWAQGHNFAIPSYRLINKSGLEHAPVFTV 199

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            V ++G        C K+ AE  AA  +L++
Sbjct: 200 EVTVNG-QRVHATGCKKKYAEIAAAKLMLEK 229


>gi|323144165|ref|ZP_08078801.1| ribonuclease III [Succinatimonas hippei YIT 12066]
 gi|322416073|gb|EFY06771.1| ribonuclease III [Succinatimonas hippei YIT 12066]
          Length = 233

 Score =  131 bits (329), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 89/217 (41%), Positives = 122/217 (56%), Gaps = 8/217 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE  IGYAF N SLLE+ALTH S    + E   RLEFLGD ILG++I+  L+  F    E
Sbjct: 13  LEITIGYAFQNLSLLEQALTHRSFGPVHNE---RLEFLGDSILGMVIAKKLYAMFPHNPE 69

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+L+   +SLV   T +++ARE  L + +R+     K   +   S+ AD VES+IAA+YL
Sbjct: 70  GDLTRMRSSLVRETTLAELAREFGLGNCLRLGPGELKTGGARRDSLLADAVESVIAAMYL 129

Query: 129 DGGIE--VAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           D G E       V  ++  R   +     ++D K+ LQE   ++    P+YKV   SG D
Sbjct: 130 DSGEEFDTVRQIVLSWFHSRLKTINPKVNQKDPKSSLQELLQSQHKPLPQYKVVNISGTD 189

Query: 185 HDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVL 220
           +D  FTV V + G++    G   SKR AEQVAA  +L
Sbjct: 190 NDQVFTVEVCVEGVSEKFSGKGSSKRRAEQVAAQHLL 226


>gi|260899641|ref|ZP_05908036.1| ribonuclease III [Vibrio parahaemolyticus AQ4037]
 gi|308110559|gb|EFO48099.1| ribonuclease III [Vibrio parahaemolyticus AQ4037]
          Length = 225

 Score =  131 bits (329), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 80/217 (36%), Positives = 119/217 (54%), Gaps = 6/217 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE+++GY F +  L+  ALTH S +  + E   RLEFLGD IL  +I+  L++ F    E
Sbjct: 8   LERKLGYQFKDAGLINLALTHRSANSKHNE---RLEFLGDSILSFVIADDLYHRFPKVNE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G++S    +LV   T +++ RE DL  ++++     K       SI AD VE++I A+YL
Sbjct: 65  GDMSRMRATLVRGHTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAIYL 124

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D  IE   + V  ++  R  A+K G  ++D KT LQE+   +    P Y VT   G  H+
Sbjct: 125 DSDIEKVRSIVLSWYYSRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEAHN 184

Query: 187 PRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222
             FTV  E++G+  P  G   S+R AEQ AA   L++
Sbjct: 185 QEFTVECEVAGVDKPVIGKGTSRRKAEQAAAETALEQ 221


>gi|85373795|ref|YP_457857.1| ribonuclease III [Erythrobacter litoralis HTCC2594]
 gi|84786878|gb|ABC63060.1| ribonuclease III [Erythrobacter litoralis HTCC2594]
          Length = 223

 Score =  131 bits (329), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 82/226 (36%), Positives = 118/226 (52%), Gaps = 5/226 (2%)

Query: 1   MSALRYSTLE--KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58
           M+ L   TL+     G+A  +  L  +ALTH S     +  Y+RLEFLGDR+LGL IS  
Sbjct: 1   MTILAPETLQWLADTGFAVEDDELWLEALTHGSTG--AERDYQRLEFLGDRVLGLAISDH 58

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF       EG L+ R N+LVS   C+++ R + L+  + +    R+D  +  T+I  DV
Sbjct: 59  LFRKV-GGSEGALAQRLNALVSKGACAKIGRRIGLSDHLVLGKQAREDGAAQSTNILGDV 117

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           VE+L+ A YLD G       V   W +         +  K+ LQEWA       P+Y++ 
Sbjct: 118 VEALLGANYLDAGFGPTCALVHLLWDEDLNGMAGRSKHPKSALQEWAAGNQRRPPQYELV 177

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            RSGPDH   FTV VE+  +  A+    SK+ AE  AA + +++ G
Sbjct: 178 DRSGPDHAAIFTVRVEVHKVGAAEATASSKQEAETEAAKKFMEQFG 223


>gi|253699690|ref|YP_003020879.1| ribonuclease III [Geobacter sp. M21]
 gi|251774540|gb|ACT17121.1| ribonuclease III [Geobacter sp. M21]
          Length = 232

 Score =  131 bits (329), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 90/224 (40%), Positives = 127/224 (56%), Gaps = 11/224 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           +E R+GY F +R LL +ALTH + ++ +     +RLEF GD +L  L+S +L   F  ++
Sbjct: 12  IEGRLGYRFRDRGLLAEALTHRTYVNEAGGRDNQRLEFFGDAVLDFLLSDMLLVRFPDSR 71

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EGEL+    +LV   + +++A ELDL   +R+     +       S+ AD  E+L+AALY
Sbjct: 72  EGELTRIRAALVDEASLAKIAIELDLGQALRLGRGEERGGGRQKRSLLADAFEALLAALY 131

Query: 128 LDGGIEVAGTFVDKYW----KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           LDGG++ A   V+  +      R L SG   RDAKTELQE A    G  P Y++   SGP
Sbjct: 132 LDGGLDPARRVVEALFAPLLSSRDLLSG---RDAKTELQEKARLVKGELPRYQLKEVSGP 188

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE---VLKREG 224
           DHD RFTV V +      +G+  SK+ AEQ AA     +LK EG
Sbjct: 189 DHDKRFTVEVYLGEELMGEGVGKSKKEAEQDAARAAFLLLKGEG 232


>gi|148265180|ref|YP_001231886.1| ribonuclease III [Geobacter uraniireducens Rf4]
 gi|146398680|gb|ABQ27313.1| RNAse III [Geobacter uraniireducens Rf4]
          Length = 240

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/222 (37%), Positives = 122/222 (54%), Gaps = 10/222 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLLFNHFD 64
           LE  I Y FA+RSLL +ALTH S  +     + +  +RLEF GD ++  L+S +L   F 
Sbjct: 12  LESAINYHFADRSLLTEALTHRSFVNESGGKWTKDNQRLEFFGDAVIDFLLSRMLLERFP 71

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            ++EG L+    SLV   + + +A E+ L +F+++     +       S+ AD  E+L+A
Sbjct: 72  DSREGALTKIRASLVDEGSLASLAEEIGLGAFLKLGRGEERSGGRRKRSLLADAYEALMA 131

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGK----FRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           A+YLDGGIE     V+ ++ +  L +G+      RD KTE QE AHA  G  P Y +   
Sbjct: 132 AVYLDGGIEPVQRLVEAHFAR--LMAGREVLSAGRDYKTEFQELAHALRGSMPRYVLRGI 189

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           SGPDH+  FTV + I      +G   SK+ AEQ AA E + R
Sbjct: 190 SGPDHERSFTVALFIGDERMGEGAGRSKKEAEQAAAREGIAR 231


>gi|224438391|ref|ZP_03659318.1| ribonuclease III [Helicobacter cinaedi CCUG 18818]
 gi|313144833|ref|ZP_07807026.1| ribonuclease 3 [Helicobacter cinaedi CCUG 18818]
 gi|313129864|gb|EFR47481.1| ribonuclease 3 [Helicobacter cinaedi CCUG 18818]
          Length = 242

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/210 (37%), Positives = 115/210 (54%), Gaps = 4/210 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LEK++GY F ++ LL +ALTH S  ++Y    ERLEFLGD +L LL+   LF  F SAKE
Sbjct: 13  LEKKLGYTFKDKKLLLEALTHKSCKNAYNN--ERLEFLGDAVLDLLVGEFLFRKFPSAKE 70

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELS     +V+ +   ++A+ LDL +F+ +S     +      SI ++  E+L+ A+YL
Sbjct: 71  GELSKLRACIVNEKGFMKLAKSLDLGAFLHISQSEEHNKGREKASILSNAFEALMGAIYL 130

Query: 129 DGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           +  +      V K  +Q   K        D KT LQE   A FG  P Y +   SGPDH 
Sbjct: 131 ESELTFLKDIVLKLLEQNYAKIDLRSLFTDYKTALQELTQAIFGEIPTYTLVSESGPDHQ 190

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             F + + ++G+  A+    SK+ A+Q +A
Sbjct: 191 KSFEIALSVNGVEYARAKGSSKKDAQQKSA 220


>gi|254797243|ref|YP_003082085.1| ribonuclease III [Neorickettsia risticii str. Illinois]
 gi|254590493|gb|ACT69855.1| ribonuclease III [Neorickettsia risticii str. Illinois]
          Length = 222

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 72/194 (37%), Positives = 108/194 (55%), Gaps = 2/194 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +    L+  +G  F N+ LL +ALTH S+      SYERLEFLGD +L L+++++L++ F
Sbjct: 1   MELEELQSLLGVHFKNKELLVEALTHPSVEKC--PSYERLEFLGDAVLNLVVASMLYDLF 58

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG LS R + LV     + +AR+++L   IR+SS          T+   +V+E+LI
Sbjct: 59  PGDPEGRLSQRQSVLVCKTALAMLARQMNLGDCIRLSSSEEASGGRDKTNNLENVLEALI 118

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            A++LD G E    F+ K+W + A++S     + K+ LQE   AK    P Y V  RSGP
Sbjct: 119 GAIFLDAGFETVTCFIQKHWYELAVQSDSIEPNPKSALQELLQAKGMKPPVYNVIDRSGP 178

Query: 184 DHDPRFTVVVEISG 197
            H P F V + + G
Sbjct: 179 AHLPIFEVEICVDG 192


>gi|152995275|ref|YP_001340110.1| ribonuclease III [Marinomonas sp. MWYL1]
 gi|189043327|sp|A6VUP6|RNC_MARMS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|150836199|gb|ABR70175.1| Ribonuclease III [Marinomonas sp. MWYL1]
          Length = 227

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/216 (40%), Positives = 120/216 (55%), Gaps = 7/216 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           MS+L Y  L +RIGY FA+  LLE ALTH S      ++ ERLEFLGD IL  +I+  LF
Sbjct: 1   MSSL-YQKLSRRIGYFFADLGLLELALTHRSFG---GKNNERLEFLGDSILNYVIAEDLF 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F  AKEGELS    SLV  +T +++ARE +L  ++++ +   K       SI AD VE
Sbjct: 57  HRFPKAKEGELSRLRASLVKGDTLAELAREFELGDYLKLGAGELKSGGFRRDSILADTVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
            +I A+YLD G++V    +  ++K+R  A       +DAKT LQE+  A+    P+Y V 
Sbjct: 117 GIIGAMYLDAGMDVCRQHILAWYKERLDATSLKIVTKDAKTRLQEFLQARKHALPQYDVV 176

Query: 179 FRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQ 213
              G  HD  F V   I       +G   S+R AEQ
Sbjct: 177 NIVGEPHDQTFYVHCHIELCEEFIEGKGNSRRIAEQ 212


>gi|15642457|ref|NP_232090.1| ribonuclease III [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121590982|ref|ZP_01678301.1| ribonuclease III [Vibrio cholerae 2740-80]
 gi|153820073|ref|ZP_01972740.1| ribonuclease III [Vibrio cholerae NCTC 8457]
 gi|153823692|ref|ZP_01976359.1| ribonuclease III [Vibrio cholerae B33]
 gi|227082582|ref|YP_002811133.1| ribonuclease III [Vibrio cholerae M66-2]
 gi|229507479|ref|ZP_04396984.1| ribonuclease III [Vibrio cholerae BX 330286]
 gi|229512326|ref|ZP_04401805.1| ribonuclease III [Vibrio cholerae B33]
 gi|229519462|ref|ZP_04408905.1| ribonuclease III [Vibrio cholerae RC9]
 gi|229606984|ref|YP_002877632.1| ribonuclease III [Vibrio cholerae MJ-1236]
 gi|254849586|ref|ZP_05238936.1| ribonuclease III [Vibrio cholerae MO10]
 gi|298500182|ref|ZP_07009987.1| ribonuclease III [Vibrio cholerae MAK 757]
 gi|18203192|sp|Q9KPB2|RNC_VIBCH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807908|sp|C3LR04|RNC_VIBCM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|9657039|gb|AAF95603.1| ribonuclease III [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121547159|gb|EAX57288.1| ribonuclease III [Vibrio cholerae 2740-80]
 gi|126509385|gb|EAZ71979.1| ribonuclease III [Vibrio cholerae NCTC 8457]
 gi|126518780|gb|EAZ76003.1| ribonuclease III [Vibrio cholerae B33]
 gi|227010470|gb|ACP06682.1| ribonuclease III [Vibrio cholerae M66-2]
 gi|229344151|gb|EEO09126.1| ribonuclease III [Vibrio cholerae RC9]
 gi|229352291|gb|EEO17232.1| ribonuclease III [Vibrio cholerae B33]
 gi|229354984|gb|EEO19905.1| ribonuclease III [Vibrio cholerae BX 330286]
 gi|229369639|gb|ACQ60062.1| ribonuclease III [Vibrio cholerae MJ-1236]
 gi|254845291|gb|EET23705.1| ribonuclease III [Vibrio cholerae MO10]
 gi|297540875|gb|EFH76929.1| ribonuclease III [Vibrio cholerae MAK 757]
          Length = 225

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/219 (36%), Positives = 117/219 (53%), Gaps = 6/219 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L  ++GY F    LL  ALTH S +  + E   RLEFLGD IL  +I+  L+  F   
Sbjct: 6   NKLTSKLGYTFKETELLNLALTHRSANGKHNE---RLEFLGDSILSFVIADELYRRFPKV 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG++S    +LV   T +++ RE DL  ++++     K       SI AD VE++I A+
Sbjct: 63  NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 122

Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD  +E A + V +++  R   +K G  ++D KT LQE+   +    P Y VT   G  
Sbjct: 123 YLDSDLETARSIVLEWYHGRLEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 182

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222
           H+  FTV  E++G+  P  G   S+R AEQ AA   L++
Sbjct: 183 HNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQ 221


>gi|189184858|ref|YP_001938643.1| ribonuclease III [Orientia tsutsugamushi str. Ikeda]
 gi|189181629|dbj|BAG41409.1| ribonuclease III [Orientia tsutsugamushi str. Ikeda]
          Length = 246

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/223 (36%), Positives = 132/223 (59%), Gaps = 12/223 (5%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  TL+  IGY F +  LL +ALTH SI+ + Y ++Y+RLEFLGD IL L+IS  LF +F
Sbjct: 18  KLDTLQSEIGYNFNSIDLLIEALTHPSINQYGYTKNYQRLEFLGDVILNLVISETLFKNF 77

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC---SFMTSIQADVVE 120
               EG+L+     LV  E+   +A++++L  +I ++++  K  C   S   +I+ + +E
Sbjct: 78  SHYNEGKLAKSRAFLVCNESICLIAQKINLHKYIIMTANEEK--CGGRSNKNNIE-NTME 134

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAK-FGVTPEYKV 177
           ++I A+YLDGGI V    V+  WK   +K  +     D K+ LQEW+ +K FG+ P Y +
Sbjct: 135 AVIGAVYLDGGIHVIKDIVNSLWK-VLIKDHELYLIADPKSALQEWSQSKNFGI-PTYTL 192

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           + ++G  H P F V+V++  L P  G   + + A++ AA  +L
Sbjct: 193 SSKTGQSHSPLFEVMVKVGRLEPQYGKGTTIKTAQKNAAQLML 235


>gi|156975792|ref|YP_001446699.1| ribonuclease III [Vibrio harveyi ATCC BAA-1116]
 gi|269960405|ref|ZP_06174778.1| Ribonuclease 3 [Vibrio harveyi 1DA3]
 gi|189043375|sp|A7MZA8|RNC_VIBHB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|156527386|gb|ABU72472.1| hypothetical protein VIBHAR_03536 [Vibrio harveyi ATCC BAA-1116]
 gi|269834832|gb|EEZ88918.1| Ribonuclease 3 [Vibrio harveyi 1DA3]
          Length = 225

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/217 (36%), Positives = 118/217 (54%), Gaps = 6/217 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE+++GY F +  L+  ALTH S +  + E   RLEFLGD IL  +I+  L++ F    E
Sbjct: 8   LERKLGYQFKDAGLINLALTHRSANSKHNE---RLEFLGDSILSFVIADDLYHRFPKVNE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G++S    +LV   T +++ RE DL  ++++     K       SI AD VE++I A+YL
Sbjct: 65  GDMSRMRATLVRGHTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAIYL 124

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D  IE     V  ++  R  A+K G  ++D KT LQE+   +    P Y VT   G  H+
Sbjct: 125 DSDIEAVRGIVLSWYNSRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEAHN 184

Query: 187 PRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222
             FTV  +++G+  P  G   S+R AEQ AA   L++
Sbjct: 185 QEFTVECDVAGVDKPVIGKGTSRRKAEQAAAETALEQ 221


>gi|255746868|ref|ZP_05420813.1| ribonuclease III [Vibrio cholera CIRS 101]
 gi|262162033|ref|ZP_06031049.1| ribonuclease III [Vibrio cholerae INDRE 91/1]
 gi|255735270|gb|EET90670.1| ribonuclease III [Vibrio cholera CIRS 101]
 gi|262028282|gb|EEY46939.1| ribonuclease III [Vibrio cholerae INDRE 91/1]
          Length = 221

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/219 (36%), Positives = 117/219 (53%), Gaps = 6/219 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L  ++GY F    LL  ALTH S +  + E   RLEFLGD IL  +I+  L+  F   
Sbjct: 2   NKLTSKLGYTFKETELLNLALTHRSANGKHNE---RLEFLGDSILSFVIADELYRRFPKV 58

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG++S    +LV   T +++ RE DL  ++++     K       SI AD VE++I A+
Sbjct: 59  NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 118

Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD  +E A + V +++  R   +K G  ++D KT LQE+   +    P Y VT   G  
Sbjct: 119 YLDSDLETARSIVLEWYHGRLEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 178

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222
           H+  FTV  E++G+  P  G   S+R AEQ AA   L++
Sbjct: 179 HNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQ 217


>gi|158320491|ref|YP_001512998.1| ribonuclease III [Alkaliphilus oremlandii OhILAs]
 gi|158140690|gb|ABW19002.1| Ribonuclease III [Alkaliphilus oremlandii OhILAs]
          Length = 241

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/219 (36%), Positives = 119/219 (54%), Gaps = 6/219 (2%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDS 65
           +K IGY F N S++ +ALTHSS ++ Y+    ++ ERLEFLGD +LG+++S  ++  +  
Sbjct: 15  QKIIGYQFKNLSIINEALTHSSYTNEYRKKQVQNNERLEFLGDSVLGIVVSEYIYLKYKD 74

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGEL+    ++V   +    A+E+ L  ++ +             SI AD  E++I A
Sbjct: 75  LPEGELTKIRANVVCEPSLGNQAKEIKLGQYLLLGKGEEATGGRDRVSILADAFEAVIGA 134

Query: 126 LYLDGGIEVAGTFV-DKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           LYLDGGI VAG F+ D   +   L   G   RD KT+LQE   +K+     YKV    GP
Sbjct: 135 LYLDGGIAVAGKFILDMLTRSIELAIEGNLFRDYKTDLQEILQSKYDEKISYKVVSEVGP 194

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           DH+  F V + +   +   G   SK+ AEQ AA   LK+
Sbjct: 195 DHNKTFEVEILLGEKSLGMGEGKSKKEAEQRAAKSALKK 233


>gi|315638039|ref|ZP_07893224.1| ribonuclease III [Campylobacter upsaliensis JV21]
 gi|315481887|gb|EFU72506.1| ribonuclease III [Campylobacter upsaliensis JV21]
          Length = 224

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 126/224 (56%), Gaps = 8/224 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +   LE ++ Y F ++ LL  ALTH S   +Y    ERLEFLGD +L L++   LF+ F 
Sbjct: 3   KLELLEAKLNYKFKDQKLLIYALTHKSAKKNYNN--ERLEFLGDAVLDLVVGEFLFHKFK 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EG+LS    +LV+ ++ +++A  L+L +FI +S   + +      SI +D  E+LI 
Sbjct: 61  NEAEGDLSKLRAALVNEKSFAKIATSLNLGAFIFMSIAEQNNGGKTKPSILSDAFEALIG 120

Query: 125 ALYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           AL+L+ G     E+A   +++ +     KS    +D KT+LQE   AK G+TPEY+    
Sbjct: 121 ALHLEAGFIKAKEIALRLIEENFPNIDAKS--LFKDYKTKLQEITQAKMGLTPEYETLRA 178

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            GPDH   F + + + G   A+ +  SK+ A+Q+AA   L++ G
Sbjct: 179 FGPDHQKSFEIALNLEGKEMARAIASSKKEAQQMAAKLTLEKLG 222


>gi|163802958|ref|ZP_02196845.1| ribonuclease III [Vibrio sp. AND4]
 gi|159173248|gb|EDP58076.1| ribonuclease III [Vibrio sp. AND4]
          Length = 226

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/217 (36%), Positives = 118/217 (54%), Gaps = 6/217 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE+++GY F +  L+  ALTH S +  + E   RLEFLGD IL  +I+  L++ F    E
Sbjct: 8   LERKLGYQFKDAGLINLALTHRSANSKHNE---RLEFLGDSILSFVIADELYHRFPKVNE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G++S    +LV   T +++ RE DL  ++++     K       SI AD VE++I A+YL
Sbjct: 65  GDMSRMRATLVRGHTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAIYL 124

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D  IE     V  ++  R  A+K G  ++D KT LQE+   +    P Y VT   G  H+
Sbjct: 125 DSDIEAVRGIVLSWYHSRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEAHN 184

Query: 187 PRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222
             FTV  +++G+  P  G   S+R AEQ AA   L++
Sbjct: 185 QEFTVECDVAGVDKPVIGKGTSRRKAEQAAAETALEQ 221


>gi|187933552|ref|YP_001885438.1| ribonuclease III [Clostridium botulinum B str. Eklund 17B]
 gi|238691613|sp|B2TJ22|RNC_CLOBB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|187721705|gb|ACD22926.1| ribonuclease III [Clostridium botulinum B str. Eklund 17B]
          Length = 232

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/226 (36%), Positives = 125/226 (55%), Gaps = 4/226 (1%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTL 58
           M+  +++ +E R+G  F N SL++ ALTHSS  + ++++   ERLEFLGD +L L I+  
Sbjct: 1   MNRYKFNDIENRLGVYFNNPSLIKTALTHSSFGNQFKDAKYNERLEFLGDSVLQLCITEY 60

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LFN F    EGEL+   + +V   +  ++A++L L  +IR+S            SIQAD 
Sbjct: 61  LFNKFKDKSEGELTKIRSLIVCENSLYEIAKKLSLGEYIRMSKGEELTGGRERMSIQADA 120

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYK 176
           VE++IAA+YLD GI     F+  ++++   K  + +   D KT+LQE       +  +Y+
Sbjct: 121 VEAVIAAVYLDKGIGFVNDFILLHFEEMINKAINNEIVLDFKTKLQELLQKDGEILIQYE 180

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +    GP H  +F   V I+      G   SK+ AEQ AA E LKR
Sbjct: 181 LVKYEGPPHRRKFFTNVIINEKVMGIGEGYSKKEAEQNAAKEALKR 226


>gi|171057289|ref|YP_001789638.1| ribonuclease III [Leptothrix cholodnii SP-6]
 gi|170774734|gb|ACB32873.1| Ribonuclease III [Leptothrix cholodnii SP-6]
          Length = 228

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/225 (36%), Positives = 127/225 (56%), Gaps = 6/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           MS     TL+ R+G+ F ++SLL +A++H S    + E   RLEFLGD +L + +S LLF
Sbjct: 1   MSTYPLDTLQARLGHVFRDQSLLLRAVSHRSHGADHNE---RLEFLGDAVLNMTVSDLLF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + FD + EG+L+     LV  +   ++A  L L + +R+S    +   +   SI AD +E
Sbjct: 58  DQFDDSPEGDLTRVRAHLVRQDMLHRLALSLQLPAVLRLSDGEARAGGAQRPSILADAME 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+Y D G E A   V + ++    +  +  + +DAKT+LQEW  A+    PEY++ 
Sbjct: 118 AVIGAVYRDAGYEAAQALVRRLFEPLVSETVTQAWAKDAKTQLQEWLQARRQSVPEYRIE 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222
              G  HD  F VV  ++G    A+G   S+RAAEQ AA  VL++
Sbjct: 178 TTRGRAHDQTFVVVCSVAGPGIEARGEGRSRRAAEQEAARLVLEQ 222


>gi|262404774|ref|ZP_06081329.1| ribonuclease III [Vibrio sp. RC586]
 gi|262349806|gb|EEY98944.1| ribonuclease III [Vibrio sp. RC586]
          Length = 225

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/219 (36%), Positives = 117/219 (53%), Gaps = 6/219 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L  ++GY F    LL  ALTH S +  + E   RLEFLGD IL  +I+  L+  F   
Sbjct: 6   NKLTSKLGYTFKEIELLNLALTHRSANGKHNE---RLEFLGDSILSFVIADELYRRFPKV 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG++S    +LV   T +++ RE DL  ++++     K       SI AD VE++I A+
Sbjct: 63  NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 122

Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD  +E A + V +++  R   +K G  ++D KT LQE+   +    P Y VT   G  
Sbjct: 123 YLDSDLETARSIVLEWYHGRLEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 182

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222
           H+  FTV  E++G+  P  G   S+R AEQ AA   L++
Sbjct: 183 HNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQ 221


>gi|121728984|ref|ZP_01681988.1| ribonuclease III [Vibrio cholerae V52]
 gi|147674970|ref|YP_001217963.1| ribonuclease III [Vibrio cholerae O395]
 gi|153214513|ref|ZP_01949422.1| ribonuclease III [Vibrio cholerae 1587]
 gi|153803086|ref|ZP_01957672.1| ribonuclease III [Vibrio cholerae MZO-3]
 gi|153826905|ref|ZP_01979572.1| ribonuclease III [Vibrio cholerae MZO-2]
 gi|153830879|ref|ZP_01983546.1| ribonuclease III [Vibrio cholerae 623-39]
 gi|229514087|ref|ZP_04403549.1| ribonuclease III [Vibrio cholerae TMA 21]
 gi|229521288|ref|ZP_04410708.1| ribonuclease III [Vibrio cholerae TM 11079-80]
 gi|229524448|ref|ZP_04413853.1| ribonuclease III [Vibrio cholerae bv. albensis VL426]
 gi|229527069|ref|ZP_04416464.1| ribonuclease III [Vibrio cholerae 12129(1)]
 gi|254226246|ref|ZP_04919839.1| ribonuclease III [Vibrio cholerae V51]
 gi|254291661|ref|ZP_04962449.1| ribonuclease III [Vibrio cholerae AM-19226]
 gi|297581085|ref|ZP_06943010.1| ribonuclease III [Vibrio cholerae RC385]
 gi|189043374|sp|A5F5H8|RNC_VIBC3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|121628750|gb|EAX61217.1| ribonuclease III [Vibrio cholerae V52]
 gi|124115315|gb|EAY34135.1| ribonuclease III [Vibrio cholerae 1587]
 gi|124121368|gb|EAY40111.1| ribonuclease III [Vibrio cholerae MZO-3]
 gi|125621219|gb|EAZ49560.1| ribonuclease III [Vibrio cholerae V51]
 gi|146316853|gb|ABQ21392.1| ribonuclease III [Vibrio cholerae O395]
 gi|148873648|gb|EDL71783.1| ribonuclease III [Vibrio cholerae 623-39]
 gi|149739268|gb|EDM53530.1| ribonuclease III [Vibrio cholerae MZO-2]
 gi|150422433|gb|EDN14392.1| ribonuclease III [Vibrio cholerae AM-19226]
 gi|227014353|gb|ACP10563.1| ribonuclease III [Vibrio cholerae O395]
 gi|229335466|gb|EEO00948.1| ribonuclease III [Vibrio cholerae 12129(1)]
 gi|229338029|gb|EEO03046.1| ribonuclease III [Vibrio cholerae bv. albensis VL426]
 gi|229341820|gb|EEO06822.1| ribonuclease III [Vibrio cholerae TM 11079-80]
 gi|229349268|gb|EEO14225.1| ribonuclease III [Vibrio cholerae TMA 21]
 gi|297534911|gb|EFH73747.1| ribonuclease III [Vibrio cholerae RC385]
          Length = 225

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/219 (36%), Positives = 117/219 (53%), Gaps = 6/219 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L  ++GY F    LL  ALTH S +  + E   RLEFLGD IL  +I+  L+  F   
Sbjct: 6   NKLTSKLGYTFKETELLNLALTHRSANGKHNE---RLEFLGDSILSFVIADELYRRFPKV 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG++S    +LV   T +++ RE DL  ++++     K       SI AD VE++I A+
Sbjct: 63  NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 122

Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD  +E A   V ++++ R   +K G  ++D KT LQE+   +    P Y VT   G  
Sbjct: 123 YLDSDLETARRIVLEWYQCRLEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 182

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222
           H+  FTV  E++G+  P  G   S+R AEQ AA   L++
Sbjct: 183 HNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQ 221


>gi|262167292|ref|ZP_06035002.1| ribonuclease III [Vibrio cholerae RC27]
 gi|262190709|ref|ZP_06048940.1| ribonuclease III [Vibrio cholerae CT 5369-93]
 gi|262024267|gb|EEY42958.1| ribonuclease III [Vibrio cholerae RC27]
 gi|262033421|gb|EEY51928.1| ribonuclease III [Vibrio cholerae CT 5369-93]
 gi|327484953|gb|AEA79360.1| Ribonuclease III [Vibrio cholerae LMA3894-4]
          Length = 221

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/219 (36%), Positives = 117/219 (53%), Gaps = 6/219 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L  ++GY F    LL  ALTH S +  + E   RLEFLGD IL  +I+  L+  F   
Sbjct: 2   NKLTSKLGYTFKETELLNLALTHRSANGKHNE---RLEFLGDSILSFVIADELYRRFPKV 58

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG++S    +LV   T +++ RE DL  ++++     K       SI AD VE++I A+
Sbjct: 59  NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 118

Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD  +E A   V ++++ R   +K G  ++D KT LQE+   +    P Y VT   G  
Sbjct: 119 YLDSDLETARRIVLEWYQCRLEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 178

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222
           H+  FTV  E++G+  P  G   S+R AEQ AA   L++
Sbjct: 179 HNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQ 217


>gi|24217145|ref|NP_714628.1| ribonuclease III [Leptospira interrogans serovar Lai str. 56601]
 gi|45655649|ref|YP_003458.1| dsRNase III [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|59798574|sp|Q75FW5|RNC_LEPIC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|59798588|sp|Q8EXX3|RNC_LEPIN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|24202183|gb|AAN51643.1| ribonuclease 3 [Leptospira interrogans serovar Lai str. 56601]
 gi|45602620|gb|AAS72095.1| dsRNase III [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 247

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/219 (35%), Positives = 116/219 (52%), Gaps = 5/219 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDS 65
           L K+IG  F+       A  HSS  +  QE     ERLEFLGD +LGL+ +  LF  +  
Sbjct: 24  LSKKIGIKFSKVEYYNTAFIHSSYKNENQEILEDNERLEFLGDSVLGLVAARSLFRKYPK 83

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A EGELS   + +VS    + ++ +L+L+ ++ +    +  +      + A++ ESL+ A
Sbjct: 84  ANEGELSRIKSRIVSTPILNSISEKLELSEYLLLGKGEKNSLGKGRRKLSANLFESLVGA 143

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YLD G E+A  F+ ++  +      K    RD KT+LQE++   F + P Y+    SGP
Sbjct: 144 IYLDQGFEIAEKFILRHLSEFVENPEKEESVRDYKTQLQEYSQKHFKILPIYRTKSESGP 203

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           DH   F VVV I     A G   SK++AEQ AA E+  R
Sbjct: 204 DHAKTFQVVVRIRDQWEASGSGVSKKSAEQNAAKELYNR 242


>gi|109947401|ref|YP_664629.1| ribonuclease III [Helicobacter acinonychis str. Sheeba]
 gi|122973320|sp|Q17XJ6|RNC_HELAH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|109714622|emb|CAJ99630.1| ribonuclease III (RNase III) [Helicobacter acinonychis str. Sheeba]
          Length = 234

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/225 (36%), Positives = 126/225 (56%), Gaps = 9/225 (4%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y TLEK +GY+F ++ LLE+ALTH S   +     ERLEFLGD +LGL+I  LL++ F  
Sbjct: 13  YITLEKALGYSFKDKHLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 70

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA+  +++AR + L  ++RVSS           SI +   E+L+A 
Sbjct: 71  YDEGKLSKLRASIVSAQGFTKLARAISLQDYLRVSSSEETSKGREKPSILSSAFEALMAG 130

Query: 126 LYLDGGIE----VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +YL+ G++    +    +++ +K+  L+      D KT LQE   A+F V P Y++    
Sbjct: 131 VYLEAGLDKVRKIMQNLLNRAYKRLDLEH--LSVDYKTALQELTQAQFCVIPTYQLLKEK 188

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR-EGI 225
           GP H   F +V+ I     A     SK+ AEQ  A + L++ +GI
Sbjct: 189 GPAHHKEFEMVLYIQNQMYATAKGKSKKEAEQQCAYQALQKLKGI 233


>gi|188589361|ref|YP_001920585.1| ribonuclease III [Clostridium botulinum E3 str. Alaska E43]
 gi|251778911|ref|ZP_04821831.1| ribonuclease III [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|238689672|sp|B2V4D6|RNC_CLOBA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|188499642|gb|ACD52778.1| ribonuclease III [Clostridium botulinum E3 str. Alaska E43]
 gi|243083226|gb|EES49116.1| ribonuclease III [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 232

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/226 (36%), Positives = 125/226 (55%), Gaps = 4/226 (1%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTL 58
           M+  +++ +E R+G  F N SL++ ALTHSS  + ++++   ERLEFLGD +L L I+  
Sbjct: 1   MNRYKFNDIENRLGVYFNNPSLIKTALTHSSFGNQFKDAKYNERLEFLGDSVLQLCITEY 60

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LFN F    EGEL+   + +V   +  ++A++L L  +IR+S            SIQAD 
Sbjct: 61  LFNKFKDKSEGELTKIRSLIVCENSLYEIAKKLSLGEYIRMSKGEELTGGRERMSIQADA 120

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYK 176
           VE++IAA+YLD GI     F+  ++++   K  + +   D KT+LQE       +  +Y+
Sbjct: 121 VEAVIAAVYLDKGIGFVNDFILLHFEEMINKAINNEIVLDFKTKLQELLQKDGEILIQYE 180

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +    GP H  +F   V I+      G   SK+ AEQ AA E LKR
Sbjct: 181 LLKYEGPPHRRKFFTNVIINEKVMGIGEGYSKKEAEQNAAKEALKR 226


>gi|304316939|ref|YP_003852084.1| ribonuclease III [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
 gi|302778441|gb|ADL69000.1| ribonuclease III [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
          Length = 232

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/226 (36%), Positives = 122/226 (53%), Gaps = 5/226 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFN 61
           +Y  LEK IGY F N+ LL+ AL HSS ++  +    S ERLEFLGD +L ++IS  L+ 
Sbjct: 6   KYENLEKNIGYVFNNKKLLKNALAHSSWANESKNIGISNERLEFLGDSVLSIIISEYLYK 65

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
                +EG LS   + +V   + ++ ARE++L  ++ +             SI AD +E+
Sbjct: 66  SRSDLEEGYLSKYRSEIVCEPSLARCAREIELGKYLLMGKGEEMTGGRNRESILADAMEA 125

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           LIAA+YLD  ++ A   V + + +  + + SG   RD KT+LQE           YK+T 
Sbjct: 126 LIAAIYLDSDLKTASDIVLRLFDEIIKEVLSGLIYRDYKTKLQEVTQKMGSEKIIYKLTD 185

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
             GPDH+  F + V +      +GM  SK+ AEQ AA E L + G+
Sbjct: 186 EYGPDHNKMFVIEVYVGENRLGRGMGRSKKEAEQYAAMEALSKMGL 231


>gi|254779351|ref|YP_003057456.1| ribonuclease III [Helicobacter pylori B38]
 gi|254001262|emb|CAX29239.1| Ribonuclease III (RNase III) [Helicobacter pylori B38]
          Length = 232

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 124/221 (56%), Gaps = 8/221 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y+TLEK +GY+F ++ LLE+ALTH S   +     ERLEFLGD +LGL+I  LL++ F  
Sbjct: 11  YTTLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 68

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA   +++A+ + L  ++RVSS           SI +   E+L+A 
Sbjct: 69  YDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRVSSSEEISNGREKPSILSSAFEALMAG 128

Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +YL+ G+    ++    +++ +K+  L+      D KT LQE   A+F V P Y++    
Sbjct: 129 VYLEAGLAKVRKIMQNLLNRAYKRLDLEH--LFMDYKTALQELTQAQFCVIPTYQLLQEK 186

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           GPDH   F + + I     A     SK+ AEQ  A +VL++
Sbjct: 187 GPDHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQVLQK 227


>gi|85712960|ref|ZP_01043999.1| Rnase III, dsRNA-specific ribonuclease [Idiomarina baltica OS145]
 gi|85693198|gb|EAQ31157.1| Rnase III, dsRNA-specific ribonuclease [Idiomarina baltica OS145]
          Length = 228

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/219 (35%), Positives = 122/219 (55%), Gaps = 6/219 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + LE+ IGY F  +SLL++ALTH S   ++    ERLEFLGD ILG++I+  LF+ F   
Sbjct: 9   TQLEQIIGYRFERQSLLKQALTHRS---AHANHNERLEFLGDSILGVVIAEALFSRFPKV 65

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+LS    ++V   + +++ ++  L  ++ +     K       SI AD +E++I A+
Sbjct: 66  AEGDLSRMRAAIVCGRSLARLGKKKGLGDYLSLGQGELKSGGYRRESILADAMEAIIGAI 125

Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           +LD  ++     V  +++++   +K G  ++D KT LQEW  A+    PEY V    G  
Sbjct: 126 FLDSDMDTVKQVVLGWFEEQLETIKPGASQKDPKTRLQEWLQARQRPLPEYDVVATQGQA 185

Query: 185 HDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222
           H+ +FTV   I GL  P  G   S+R AEQ AA   L++
Sbjct: 186 HNQQFTVTCTIEGLPEPLLGTGTSRRKAEQAAATSALEQ 224


>gi|291165574|gb|EFE27623.1| ribonuclease III [Filifactor alocis ATCC 35896]
          Length = 229

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/220 (39%), Positives = 123/220 (55%), Gaps = 8/220 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSS-ISHSYQESY---ERLEFLGDRILGLLISTLLFNHFD 64
            +K+IGY F +  LL +ALTH+S I+ +  ++    ERLEFLGD ILG+++ST LF    
Sbjct: 7   FQKKIGYTFQDEKLLREALTHTSYINENRNKNLRPNERLEFLGDSILGVVVSTYLFEKRK 66

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGELS    S+V  ++   VA+ LD  S+I +             SI AD+VE+LIA
Sbjct: 67  DLPEGELSKIRASIVCEDSLQLVAKRLDAGSYIYMGKGEEMTGGRTRHSILADMVEALIA 126

Query: 125 ALYLDGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           A+YLDGG++ A  F+  + +   +RA K G   +D KT LQE    K   + EY+V    
Sbjct: 127 AIYLDGGMKAASKFIFLFMEDVMKRATK-GDMDKDYKTRLQEIVQQKPDRSIEYRVIGEK 185

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           GPDH   F V + +     A G   SK+ AE+ AA + L+
Sbjct: 186 GPDHRKIFVVELLVDKKQVAVGEGYSKKEAEKQAAKKALQ 225


>gi|78778218|ref|YP_394533.1| ribonuclease III [Sulfurimonas denitrificans DSM 1251]
 gi|78498758|gb|ABB45298.1| RNAse III [Sulfurimonas denitrificans DSM 1251]
          Length = 226

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/217 (36%), Positives = 123/217 (56%), Gaps = 8/217 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE+ +GY F N+ L+ +ALTH S    Y    ERLEFLGD +L L++   LF  F S+ E
Sbjct: 8   LEEILGYKFKNQKLIIEALTHKSHKQPYDN--ERLEFLGDAVLDLIVGEYLFFKFASSDE 65

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G LS    +LV+ +   ++AR ++L  +I +S+    +      S+ ++  E++I A+YL
Sbjct: 66  GTLSKIRAALVNEDGFERLARSINLGEYIYLSNAEENNGGREKASLLSNAFEAMIGAIYL 125

Query: 129 DGGIE----VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           + G++    +A   +++ +++ +L S    RD KT LQE   A+FG TPEY V    GPD
Sbjct: 126 ESGLDIVKPIAIGIIERNYQEISLDS--LFRDYKTTLQELTQARFGETPEYIVVASRGPD 183

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           H   F V V I G   A+ +  SK+ A+Q AA   +K
Sbjct: 184 HKKEFEVAVIIEGKEYARAIGKSKKIAQQEAAEMAVK 220


>gi|57506125|ref|ZP_00372047.1| ribonuclease III (rnc) [Campylobacter upsaliensis RM3195]
 gi|57015609|gb|EAL52401.1| ribonuclease III (rnc) [Campylobacter upsaliensis RM3195]
          Length = 224

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 124/224 (55%), Gaps = 8/224 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +   LE ++ Y F  + LL  ALTH S   +Y    ERLEFLGD +L L++   LF+ F 
Sbjct: 3   KLELLEAKLNYKFKEQKLLIYALTHKSAKKNYNN--ERLEFLGDAVLDLVVGEFLFHKFK 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EG+LS    +LV+ ++ +++A  L+L  FI +S   + +      SI +D  E+LI 
Sbjct: 61  NEAEGDLSKLRAALVNEKSFAKIATSLNLGDFIFMSIAEQNNGGKTKPSILSDTFEALIG 120

Query: 125 ALYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           AL+L+ G     E+A   +++ +     KS    +D KT+LQE   AK G+TPEY+    
Sbjct: 121 ALHLEAGFIKAKEIALRLIEENFPNIDAKS--LFKDYKTKLQEITQAKMGLTPEYETQRA 178

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            GPDH   F + + + G   A+ +  SK+ A+Q+AA   L++ G
Sbjct: 179 FGPDHQKSFEIALNLEGKEMARAIASSKKEAQQMAAKLTLEKLG 222


>gi|307722018|ref|YP_003893158.1| RNAse III [Sulfurimonas autotrophica DSM 16294]
 gi|306980111|gb|ADN10146.1| RNAse III [Sulfurimonas autotrophica DSM 16294]
          Length = 227

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 83/223 (37%), Positives = 126/223 (56%), Gaps = 11/223 (4%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           TLE+++GY F ++ L+ +ALTH S    Y    ERLEFLGD +L L++   LF  F ++ 
Sbjct: 7   TLEEKLGYEFKDKKLIIEALTHKSYKQPYDN--ERLEFLGDAVLDLVVGEYLFRKFRTSD 64

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG+LS    SLV+     ++AR L L  +I +S+    +     +S+ ++  E+++ A+Y
Sbjct: 65  EGKLSKIRASLVNETGFDKLARALHLGDYILLSNAEDNNGGREKSSLLSNAFEAIMGAVY 124

Query: 128 LDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           L+ G+     +A   ++K  ++ +L S    RD KT LQE   A+FG+TPEYKV    GP
Sbjct: 125 LEAGLGEVQRIAIDLIEKNHEEISLDS--LFRDFKTTLQELTQARFGITPEYKVLASRGP 182

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA---AAEVLKRE 223
           DH   F V V I     A+    SK+ A+Q A   A E+L +E
Sbjct: 183 DHQKEFEVGVFIEDKEYARANGKSKKIAQQEAARVAVELLNKE 225


>gi|297620496|ref|YP_003708633.1| ribonuclease III [Waddlia chondrophila WSU 86-1044]
 gi|297375797|gb|ADI37627.1| ribonuclease III [Waddlia chondrophila WSU 86-1044]
          Length = 252

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 120/222 (54%), Gaps = 8/222 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           S +E +IG+ F ++ LL  A TH S    ++   E  ERLE+LGD ILG LI+  L+ + 
Sbjct: 21  SEIEAKIGHTFKDKQLLSLAFTHRSYINENNDAHEHNERLEYLGDSILGFLIAEYLYKYL 80

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            +  EGELS   + LV A +C    ++LDL  ++ +    + +      SI AD+ ESLI
Sbjct: 81  PNTPEGELSYLRSRLVEASSCVIYVQKLDLEQYLLLGKGEQMNDGRGRDSILADLFESLI 140

Query: 124 AALYLDGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            A+YLDGG++ A  F+ K +    +  LK+     + K +LQ++   K+   P YKV   
Sbjct: 141 GAIYLDGGMDAARLFLFKNFSKEIEEILKTPIC--NWKAQLQDYCQKKYRHPPLYKVVSE 198

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           SGPDH   FT+ V I+      G   SK+ A+Q AA +   R
Sbjct: 199 SGPDHQKIFTISVLINNQEVGHGEGPSKKEAQQAAAKDAFSR 240


>gi|254448879|ref|ZP_05062335.1| ribonuclease III [gamma proteobacterium HTCC5015]
 gi|198261569|gb|EDY85858.1| ribonuclease III [gamma proteobacterium HTCC5015]
          Length = 225

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/225 (38%), Positives = 121/225 (53%), Gaps = 10/225 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           STL+  + Y F+N  LLE A+TH S S +   + ERLEFLGD IL   ++  LF  F   
Sbjct: 3   STLQSTLNYTFSNGDLLEVAVTHRSASKT---NNERLEFLGDSILNFTVAAELFERFPER 59

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+LS    SLV   + +  A+++DL  F+++     K       SI AD VE++I A+
Sbjct: 60  PEGDLSRLRASLVDKSSLAAHAKKMDLGPFLKLGGGELKSGGWRRDSILADAVEAIIGAI 119

Query: 127 YLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLDGGIE A  F+   +     +L +    +DAKT LQEW   +    P+Y++   SG  
Sbjct: 120 YLDGGIESAQQFIRDLYDGDFESLPTANELKDAKTRLQEWLQGRHYALPQYEMVEVSGKP 179

Query: 185 HDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAA----AEVLKREG 224
           H+ +FTV   I S          S+R AEQ AA    A++L +EG
Sbjct: 180 HEQQFTVSCYIDSHDVQVNATGRSRRKAEQAAAETALAQLLDQEG 224


>gi|301058150|ref|ZP_07199202.1| ribonuclease III [delta proteobacterium NaphS2]
 gi|300447782|gb|EFK11495.1| ribonuclease III [delta proteobacterium NaphS2]
          Length = 236

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 85/233 (36%), Positives = 126/233 (54%), Gaps = 12/233 (5%)

Query: 1   MSALR----YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILG 52
           M AL+    + +L + +GY+F + +L+ +A  HSS  +       E  ERLEFLGD +L 
Sbjct: 1   MGALQADKEFKSLCETLGYSFNDIALVIQAFRHSSYVNEQMVPGLEDNERLEFLGDAVLD 60

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAET-CSQVARELDLASFIRVSSDLRKDVCSFM 111
           L +S LL      A EGELS RF S+V  E     VA  L+L  ++ +     + +    
Sbjct: 61  LAVSHLLMERNPHANEGELS-RFRSMVVDEAGLHDVATRLELGRYLLLGKGEDQSLGRQK 119

Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKF 169
            SI ADV E+L+ A+YLDGG ++    ++K +     K G     +D K+ LQE+    F
Sbjct: 120 PSILADVTEALLGAIYLDGGFDITKKVIEKLFAPLLEKVGTDDLVQDYKSLLQEFTQQAF 179

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              P+Y++T   GP HD  F +V+ ++G+  A+GM  SK+ AEQ AA E   R
Sbjct: 180 KCLPQYRLTEEKGPAHDKVFCIVLAVNGIVMAEGMGKSKKEAEQHAAKEAFLR 232


>gi|262170590|ref|ZP_06038268.1| ribonuclease III [Vibrio mimicus MB-451]
 gi|261891666|gb|EEY37652.1| ribonuclease III [Vibrio mimicus MB-451]
          Length = 221

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/219 (36%), Positives = 117/219 (53%), Gaps = 6/219 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L  ++GY F    LL  ALTH S +  + E   RLEFLGD IL  +I+  L++ F   
Sbjct: 2   NKLTSKLGYTFKEIELLNLALTHRSANGKHNE---RLEFLGDSILSFVIADELYHRFPKV 58

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG++S    +LV   T +++ RE DL  ++++     K       SI AD VE++I A+
Sbjct: 59  NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 118

Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD  +E A   V +++  R   +K G  ++D KT LQE+   +    P Y VT   G  
Sbjct: 119 YLDSDLETARRIVLEWYHCRLEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 178

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222
           H+  FTV  E++G+  P  G   S+R AEQ AA   L++
Sbjct: 179 HNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQ 217


>gi|261416404|ref|YP_003250087.1| ribonuclease III [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261372860|gb|ACX75605.1| ribonuclease III [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302326232|gb|ADL25433.1| ribonuclease III [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 270

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/214 (35%), Positives = 118/214 (55%), Gaps = 6/214 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           LE ++GY F +  LL  AL H S        Y  + ERLEFLGD +L +L +  L+  + 
Sbjct: 23  LEAKLGYRFRDPELLAHALVHRSFLVGKDVPYASNNERLEFLGDSVLNMLTTEFLYRTYP 82

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           S  EGELS R +++VS   C+Q ++E DL+ ++++     K       SI AD  E+++ 
Sbjct: 83  SDPEGELSKRKSAIVSGHACAQSSKEWDLSEYVKIGKSEAKMGGRGKESILADAYEAVLG 142

Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YLDGG+E     ++K+   R   + S     + K+EL E+   K   +PEY +    G
Sbjct: 143 AVYLDGGLEEVRAILNKFHFPRVQEIISATDFVNYKSELLEFCQGKLRCSPEYVIVGEEG 202

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           P+H   FTV V ++G + A+G   +K+ AEQ A+
Sbjct: 203 PEHQKVFTVEVVVNGKSYARGQGPNKKKAEQEAS 236


>gi|114564093|ref|YP_751607.1| ribonuclease III [Shewanella frigidimarina NCIMB 400]
 gi|122299035|sp|Q07YZ6|RNC_SHEFN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|114335386|gb|ABI72768.1| RNAse III [Shewanella frigidimarina NCIMB 400]
 gi|211926923|dbj|BAG82671.1| ribonuclease III [Shewanella sp. SIB1]
          Length = 226

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 84/216 (38%), Positives = 122/216 (56%), Gaps = 6/216 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L + +GY F N  LL +ALTH S ++ + E   RLEFLGD IL + IS  L++ F  A E
Sbjct: 10  LCRTLGYEFNNIELLIQALTHRSAANKHNE---RLEFLGDSILSIAISDALYHQFPKATE 66

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    +LV  +T + +A+E  L  ++ +     K       SI AD VE++I A+YL
Sbjct: 67  GDLSRMRATLVKGDTLTIIAKEFKLGDYLYLGPGELKSGGFRRESILADAVEAIIGAVYL 126

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D  IEV    +  ++++R   +K G  ++D KT LQE+        P+Y+V    G  HD
Sbjct: 127 DADIEVCRKLLLSWYQERLAEIKPGINQKDPKTILQEYLQGFKKPLPDYQVVAVEGEAHD 186

Query: 187 PRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221
             FTV  +IS L     G+  S+R AEQ+AAA+VL+
Sbjct: 187 QTFTVECKISELDKVVTGVASSRRKAEQLAAAQVLE 222


>gi|332532635|ref|ZP_08408511.1| ribonuclease III [Pseudoalteromonas haloplanktis ANT/505]
 gi|332037851|gb|EGI74300.1| ribonuclease III [Pseudoalteromonas haloplanktis ANT/505]
          Length = 225

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 81/217 (37%), Positives = 120/217 (55%), Gaps = 5/217 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L K+IGY FA++ LLE+A+TH S  H  Q + ERLEFLGD IL  +I+  L+  F  A
Sbjct: 6   TELYKKIGYEFADQGLLEQAMTHRS--HKGQHN-ERLEFLGDSILSFVIANALYAKFPKA 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +EG+LS   ++LV  +T ++   E  L  ++R+     K       S  AD VE++I A 
Sbjct: 63  REGDLSRMRSTLVRGQTLAEFGLEFGLGDYLRLGPGELKSGGFRRESTLADAVEAIIGAA 122

Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           +LD GI+  G  +  +++ R  A+  G  ++D KT LQE+  A+    P Y V    G  
Sbjct: 123 FLDSGIDSCGDLILSWYESRLDAISPGLNQKDPKTLLQEYLQARKLSLPGYTVVDTKGQA 182

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           H+  FTV   + G+     +  S+R AEQ AA + LK
Sbjct: 183 HNQTFTVECIVDGMDSIISVGSSRRKAEQKAAEKALK 219


>gi|315127397|ref|YP_004069400.1| RNase III, ds RNA [Pseudoalteromonas sp. SM9913]
 gi|315015911|gb|ADT69249.1| RNase III, ds RNA [Pseudoalteromonas sp. SM9913]
          Length = 225

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 81/217 (37%), Positives = 121/217 (55%), Gaps = 5/217 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L KRIGY FA++ LLE+A+TH S  H  Q + ERLEFLGD IL  +I+  L+  F  A
Sbjct: 6   TELYKRIGYTFADQGLLEQAMTHRS--HKGQHN-ERLEFLGDSILSFVIANALYAKFPKA 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +EG+LS   ++LV  +T ++   E +L  ++R+     K       S  AD VE++I A+
Sbjct: 63  REGDLSRMRSTLVRGQTLAEFGLEFELGDYLRLGPGELKSGGFRRESTLADAVEAIIGAV 122

Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           +LD  I+  G  +  +++ R  A+  G  ++D KT LQE+  A+    P Y V    G  
Sbjct: 123 FLDSDIDRCGELILAWYESRLDAISPGLNQKDPKTLLQEYLQARKLSLPGYTVVDTKGQA 182

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           H+  FTV   + G+     +  S+R AEQ AA + LK
Sbjct: 183 HNQTFTVECIVDGMDSIISVGSSRRKAEQKAAEKALK 219


>gi|304398620|ref|ZP_07380492.1| ribonuclease III [Pantoea sp. aB]
 gi|304353831|gb|EFM18206.1| ribonuclease III [Pantoea sp. aB]
          Length = 226

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 82/228 (35%), Positives = 126/228 (55%), Gaps = 6/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F +  LL++ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 1   MNPILINKLQRKLGYTFTHSELLQQALTHRSASSKHNE---RLEFLGDSILSYVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD GIE     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGIFLDSGIERVEQLILDWYQSRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKREGI 225
              G  HD  FT+  ++SG+A P  G+  S+R AEQ AA + L + G+
Sbjct: 178 QVRGEAHDQEFTIHCQVSGMAEPVVGVGSSRRKAEQAAAEQALIKLGL 225


>gi|148284924|ref|YP_001249014.1| ribonuclease III [Orientia tsutsugamushi str. Boryong]
 gi|146740363|emb|CAM80798.1| ribonuclease III [Orientia tsutsugamushi str. Boryong]
          Length = 251

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 81/219 (36%), Positives = 130/219 (59%), Gaps = 12/219 (5%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           L+  IGY F +  LL +ALTH SI+ + Y ++Y+RLEFLGD IL L+IS  LF +F    
Sbjct: 27  LQSEIGYNFNSIDLLIEALTHPSINQYGYTKNYQRLEFLGDVILNLVISETLFKNFSHYN 86

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC---SFMTSIQADVVESLIA 124
           EG+L+     LV  E+   +A++++L  +I ++++  K  C   S   +I+ + +E++I 
Sbjct: 87  EGKLAKSRAFLVCNESICLIAQKINLHKYIIMTANEEK--CGGRSNKNNIE-NTMEAVIG 143

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAK-FGVTPEYKVTFRS 181
           A+YLDGGI V    V+  WK   +K  +     D K+ LQEW+ +K FG+ P Y ++ ++
Sbjct: 144 AVYLDGGIHVIKDIVNSLWK-VLIKDHELYLIADPKSALQEWSQSKNFGI-PTYTLSSKT 201

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           G  H P F V+V++  L P  G   + + A++ AA  +L
Sbjct: 202 GQSHSPLFEVMVKVGRLEPQYGKGTTIKTAQKNAAQLML 240


>gi|258622345|ref|ZP_05717370.1| Ribonuclease 3 [Vibrio mimicus VM573]
 gi|258626729|ref|ZP_05721551.1| Ribonuclease 3 [Vibrio mimicus VM603]
 gi|258580985|gb|EEW05912.1| Ribonuclease 3 [Vibrio mimicus VM603]
 gi|258585361|gb|EEW10085.1| Ribonuclease 3 [Vibrio mimicus VM573]
          Length = 225

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 79/219 (36%), Positives = 117/219 (53%), Gaps = 6/219 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L  ++GY F    LL  ALTH S +  + E   RLEFLGD IL  +I+  L++ F   
Sbjct: 6   NKLTSKLGYTFKEIELLNLALTHRSANGKHNE---RLEFLGDSILSFVIADELYHRFPKV 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG++S    +LV   T +++ RE DL  ++++     K       SI AD VE++I A+
Sbjct: 63  NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 122

Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD  +E A   V +++  R   +K G  ++D KT LQE+   +    P Y VT   G  
Sbjct: 123 YLDSDLETARRIVLEWYHCRLEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 182

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222
           H+  FTV  E++G+  P  G   S+R AEQ AA   L++
Sbjct: 183 HNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQ 221


>gi|197285743|ref|YP_002151615.1| ribonuclease III [Proteus mirabilis HI4320]
 gi|238693201|sp|B4F047|RNC_PROMH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|194683230|emb|CAR43912.1| RNase III, ds RNA [Proteus mirabilis HI4320]
          Length = 226

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 77/212 (36%), Positives = 115/212 (54%), Gaps = 6/212 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ L  + L+K++GY F    LL +ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 1   MNTLLVNQLQKKLGYTFKQNELLLQALTHRSASSKHNE---RLEFLGDSILSYVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI A++LD  I+     + K+++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGAIFLDSDIQNIENIILKWYENRLAEISPGDKQKDPKTRLQEYLQGRHLPLPSYVVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKR 209
              G  HD  FT+  +ISG+  P +GM  S+R
Sbjct: 178 QVRGEAHDQEFTIHCQISGIDQPVKGMGTSRR 209


>gi|261211555|ref|ZP_05925843.1| ribonuclease III [Vibrio sp. RC341]
 gi|260839510|gb|EEX66136.1| ribonuclease III [Vibrio sp. RC341]
          Length = 221

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 79/219 (36%), Positives = 116/219 (52%), Gaps = 6/219 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L  ++GY F    LL  ALTH S +  + E   RLEFLGD IL  +I+  L+  F   
Sbjct: 2   NKLTSKLGYTFKETELLNLALTHRSANGKHNE---RLEFLGDSILSFVIADELYRRFPKV 58

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG++S    +LV   T +++ RE DL  ++++     K       SI AD VE++I A+
Sbjct: 59  NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 118

Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD  +E A   V +++  R   +K G  ++D KT LQE+   +    P Y VT   G  
Sbjct: 119 YLDSELETARRIVLEWYHCRLEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 178

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222
           H+  FTV  E++G+  P  G   S+R AEQ AA   L++
Sbjct: 179 HNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQ 217


>gi|313114998|ref|ZP_07800491.1| ribonuclease III [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310622689|gb|EFQ06151.1| ribonuclease III [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 224

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 88/221 (39%), Positives = 120/221 (54%), Gaps = 9/221 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65
           LE  IGY F N  LLE ALTH+S ++  +   +  ERLEFLGD +L ++ +  LF+ +  
Sbjct: 5   LETIIGYKFKNPELLEIALTHTSYANESRTPVKHNERLEFLGDSVLQIVSADYLFHAYAD 64

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+L+    SLVS     Q A+E+DL  ++R+     +       S+ +D  E+LIAA
Sbjct: 65  RPEGDLTRIRASLVSEGALFQFAQEIDLGEYLRLGRGEERCGGRTRPSVVSDAFEALIAA 124

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           LYLDGG++VA +F+  +     +  GK    D KT LQE           Y V   SGPD
Sbjct: 125 LYLDGGMDVARSFILPF-----ITEGKHAEADYKTRLQEIVQQNPEERLSYVVESESGPD 179

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           HD  F V V  +    A+G   SK+AAEQ AA E LK  G+
Sbjct: 180 HDKHFVVAVRFNSDRVARGEGRSKKAAEQCAAKEALKLLGV 220


>gi|283781424|ref|YP_003372179.1| ribonuclease III [Pirellula staleyi DSM 6068]
 gi|283439877|gb|ADB18319.1| ribonuclease III [Pirellula staleyi DSM 6068]
          Length = 273

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 77/213 (36%), Positives = 116/213 (54%), Gaps = 3/213 (1%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           E+R+GY F ++ LL  ALTH+S +     S ERLEFLGD ILG+ +  +L+  F    EG
Sbjct: 49  ERRLGYVFNSKPLLRSALTHASGAEHRLASNERLEFLGDAILGVYVCEMLYRQFPDYLEG 108

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           +L+   + +VS +TC++V+  L L  F+ +   +     +   S+ ADV ESLIAA+YLD
Sbjct: 109 DLTKVKSVVVSRQTCAKVSEALGLQEFLILGKGMSSSP-NVPPSLLADVFESLIAAIYLD 167

Query: 130 GGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           GG + A  F++ Y         +G+   + K+ LQ++A  + G TP Y +    GPDH  
Sbjct: 168 GGEQAARQFINNYIGPEVELAAAGELGGNYKSLLQQFAQRECGNTPTYHLLDEKGPDHSK 227

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            F +   + G         +K+ AEQ AA   L
Sbjct: 228 CFKISASVGGKKYQAAWGRNKKEAEQRAANNAL 260


>gi|88797948|ref|ZP_01113535.1| ribonuclease III [Reinekea sp. MED297]
 gi|88779145|gb|EAR10333.1| ribonuclease III [Reinekea sp. MED297]
          Length = 219

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 84/219 (38%), Positives = 124/219 (56%), Gaps = 6/219 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           + K IGY F + SLLE+ALTH S +   +++ ERLEFLGD IL   I+  L++ F +AKE
Sbjct: 1   MTKAIGYQFESESLLEQALTHRSYA---RKNNERLEFLGDAILNCTIAQALYHQFPNAKE 57

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G++S     LV  +T +++ RE +L  F+R+ S   K       SI AD VE++I A+ L
Sbjct: 58  GQMSRLRAHLVKGDTLAEIGREFELGEFLRLGSGELKSGGFRRDSILADAVEAIIGAISL 117

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D  +  A   +  ++++R   L   +  +D+KT LQE+  A+    PEY+V   +G  H 
Sbjct: 118 DADLGKAQQVLLSWYEERLSNLDLKENIKDSKTRLQEFLQARRLPLPEYQVKTITGEAHQ 177

Query: 187 PRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREG 224
             FTV  ++  L  P  G+  S+R AEQ AA   LK  G
Sbjct: 178 QEFTVHCQVESLETPMVGVGSSRRMAEQEAANAALKALG 216


>gi|160946001|ref|ZP_02093227.1| hypothetical protein FAEPRAM212_03534 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443732|gb|EDP20737.1| hypothetical protein FAEPRAM212_03534 [Faecalibacterium prausnitzii
           M21/2]
 gi|295103252|emb|CBL00796.1| RNAse III [Faecalibacterium prausnitzii SL3/3]
          Length = 224

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 88/221 (39%), Positives = 119/221 (53%), Gaps = 9/221 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65
           LE  IGY F N  LLE ALTH+S ++  +   +  ERLEFLGD +L ++ +  LF+ +  
Sbjct: 5   LETIIGYKFKNPELLEIALTHTSYANESRTPVKHNERLEFLGDSVLQIVSADYLFHAYAD 64

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+L+    SLVS     Q A+E+DL  ++R+     +       S+ +D  E++IAA
Sbjct: 65  RPEGDLTRIRASLVSESALFQFAQEIDLGEYLRLGRGEERCGGRTRPSVVSDAFEAVIAA 124

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           LYLDGG+EVA  F+  +     +  GK    D KT LQE           Y V   SGPD
Sbjct: 125 LYLDGGMEVARKFILPF-----ITEGKHAEADYKTRLQEIVQQNPEERLSYVVESESGPD 179

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           HD  F V V  +    A+G   SK+AAEQ AA E LK  G+
Sbjct: 180 HDKHFVVAVRFNSDRVARGEGRSKKAAEQCAAKEALKLLGV 220


>gi|320104374|ref|YP_004179965.1| RNAse III [Isosphaera pallida ATCC 43644]
 gi|319751656|gb|ADV63416.1| RNAse III [Isosphaera pallida ATCC 43644]
          Length = 238

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 78/218 (35%), Positives = 128/218 (58%), Gaps = 7/218 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           ++ E+ IG++F +R LL  ALTHSS +     S ERLEFLGD +LG+++   LF+ F  A
Sbjct: 11  ASCERVIGHSFQDRGLLRAALTHSSRAVHPLASNERLEFLGDSVLGMIVCDTLFHLFPEA 70

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           KEG+L+   + +VS +TC+++AR+L L +++ +   +     +  +++ A+V ES++ A+
Sbjct: 71  KEGDLTRIKSVVVSRQTCTKIARKLGLQNYLLLGKGMGPSSQAPASTL-ANVFESVVGAI 129

Query: 127 YLDGGIEVAGTFV--DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD G E A  FV  +   +  + K+ + + + K++LQ++A    G TP Y +    GPD
Sbjct: 130 YLDSGFEAARRFVLNNLLPEIESSKNEESQGNYKSQLQQYAQKNHGTTPTYHLLEEKGPD 189

Query: 185 HDPRFTVVVEISG--LAPAQGMDCSKRAAEQVAAAEVL 220
           H   F ++  I      PA G   +K+ AEQ AA   L
Sbjct: 190 HRKCFKILARIGSHQFPPAWGQ--TKKDAEQRAAQNAL 225


>gi|262166502|ref|ZP_06034239.1| ribonuclease III [Vibrio mimicus VM223]
 gi|262026218|gb|EEY44886.1| ribonuclease III [Vibrio mimicus VM223]
          Length = 225

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 79/219 (36%), Positives = 117/219 (53%), Gaps = 6/219 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L  ++GY F    LL  ALTH S +  + E   RLEFLGD IL  +I+  L++ F   
Sbjct: 6   NKLTSKLGYTFKEIELLNLALTHRSANGKHNE---RLEFLGDSILSFVIADELYHRFPKV 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG++S    +LV   T +++ RE DL  ++++     K       SI AD VE++I A+
Sbjct: 63  NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 122

Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD  +E A   V +++  R   +K G  ++D KT LQE+   +    P Y VT   G  
Sbjct: 123 YLDSELETARRIVLEWYHCRLEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 182

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222
           H+  FTV  E++G+  P  G   S+R AEQ AA   L++
Sbjct: 183 HNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQ 221


>gi|221135073|ref|ZP_03561376.1| ribonuclease III [Glaciecola sp. HTCC2999]
          Length = 241

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 79/220 (35%), Positives = 125/220 (56%), Gaps = 6/220 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           +  L++ I Y F + SLL++ALTH S   ++++  ERLEFLGD +LG+++   LF  F +
Sbjct: 21  FVKLQRLIDYQFNDVSLLKQALTHKS---AHRQHNERLEFLGDAVLGMIVGEHLFKAFPN 77

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           + EG+L+   +++V  +T +++A E  L  FI++ +   K       SI ADVVES+I A
Sbjct: 78  SPEGKLTRMRSAIVKGDTLAEIALEKGLGEFIQLGAGELKSGGKQRYSILADVVESIIGA 137

Query: 126 LYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YLD G+     F+  ++  R   L      +DAKT LQE+  ++    P Y+V    G 
Sbjct: 138 IYLDAGMNQCYDFIHAWFGARIAKLDPDVHPKDAKTRLQEYLQSRGIELPVYEVVDIKGK 197

Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222
           DH+  FTV      L+ P Q    S++ AEQ+AA   L++
Sbjct: 198 DHNQTFTVSCNTVTLSDPIQAQGASRKRAEQIAAQLTLEK 237


>gi|203284601|ref|YP_002222341.1| ribonuclease III [Borrelia duttonii Ly]
 gi|203288135|ref|YP_002223150.1| ribonuclease III [Borrelia recurrentis A1]
 gi|201084044|gb|ACH93635.1| ribonuclease III [Borrelia duttonii Ly]
 gi|201085355|gb|ACH94929.1| ribonuclease III [Borrelia recurrentis A1]
          Length = 243

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 75/212 (35%), Positives = 118/212 (55%), Gaps = 7/212 (3%)

Query: 17  FANRSLLEKALTHSSISHSYQESY---ERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           F +  LL  +L+HSS ++ + + Y   ERLEFLGD +L L+I+  L+  +    EGELS 
Sbjct: 27  FNDIYLLNMSLSHSSYANEFDQKYANNERLEFLGDSVLNLIITDYLYKFYPDKSEGELSK 86

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
             + +VS ++ S +AREL+L ++I +      +       I AD +E+ + ALYLDGG  
Sbjct: 87  ARSYIVSEDSLSSIARELNLGNYILLGRGEENNDGRNKKGILADAIEAFVGALYLDGGFS 146

Query: 134 VAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
            A TFV + ++   +     G F +D K+ LQE+   K+ ++P YK+    GPDH+  F 
Sbjct: 147 KASTFVVELFEVHIRLMFNRGDF-KDYKSLLQEYVQKKYKISPSYKLAKELGPDHNKIFC 205

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           V + ++    + G   SK+ AE +AA   LK 
Sbjct: 206 VELYVNDKFVSNGKGKSKKEAEMIAAEMALKN 237


>gi|213161855|ref|ZP_03347565.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi
           str. E00-7866]
          Length = 231

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 81/225 (36%), Positives = 124/225 (55%), Gaps = 6/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 6   MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 63  HRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTVE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  ++K R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 123 ALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 182

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222
              G  HD  FT+  ++SGL+ P  G   S+R AEQ AA + LK+
Sbjct: 183 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQALKK 227


>gi|152999778|ref|YP_001365459.1| ribonuclease III [Shewanella baltica OS185]
 gi|189043347|sp|A6WKQ7|RNC_SHEB8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|151364396|gb|ABS07396.1| Ribonuclease III [Shewanella baltica OS185]
          Length = 226

 Score =  128 bits (321), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 83/216 (38%), Positives = 123/216 (56%), Gaps = 6/216 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L + +GY F N  LL +ALTH S ++ + E   RLEFLGD IL ++IS  L++ F  A E
Sbjct: 10  LCRTLGYEFKNIELLTQALTHRSAANKHNE---RLEFLGDSILSIVISDALYHQFPKATE 66

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    +LV  +T + +A+E  L  ++ +     K       SI AD VE++I A+YL
Sbjct: 67  GDLSRMRATLVRGDTLTIIAQEFKLGDYLYLGPGELKSGGFRRESILADAVEAIIGAVYL 126

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D  +EV    + K++ +R   ++ G  ++DAKT LQE         P+Y+V    G  HD
Sbjct: 127 DSDLEVCRALLLKWYAERLAEIQPGISQKDAKTLLQEHLQGFKKPLPDYQVINIEGDAHD 186

Query: 187 PRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLK 221
             FTV   I  L+ +  G+  S+R AEQ+AAA+VL+
Sbjct: 187 QTFTVECRIEDLSQSVIGVASSRRKAEQIAAAQVLE 222


>gi|16765901|ref|NP_461516.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29140810|ref|NP_804152.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|56412543|ref|YP_149618.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197361478|ref|YP_002141114.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|205353677|ref|YP_002227478.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207857988|ref|YP_002244639.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|20141650|sp|Q56056|RNC_SALTY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|81360707|sp|Q5PIG5|RNC_SALPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226741376|sp|B5QTU8|RNC_SALEP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226741377|sp|B5RD49|RNC_SALG2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|238689916|sp|B5BAT0|RNC_SALPK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|16421128|gb|AAL21475.1| RNase III, ds RNA [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29136435|gb|AAO68001.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|56126800|gb|AAV76306.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197092954|emb|CAR58384.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|205273458|emb|CAR38435.1| Ribonuclease III [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|206709791|emb|CAR34143.1| Ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|261247776|emb|CBG25604.1| RNase III [Salmonella enterica subsp. enterica serovar Typhimurium
           str. D23580]
 gi|267994707|gb|ACY89592.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301159129|emb|CBW18643.1| Ribonuclease III [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|332989508|gb|AEF08491.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 226

 Score =  128 bits (321), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 81/225 (36%), Positives = 124/225 (55%), Gaps = 6/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  ++K R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222
              G  HD  FT+  ++SGL+ P  G   S+R AEQ AA + LK+
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQALKK 222


>gi|270156955|ref|ZP_06185612.1| ribonuclease III [Legionella longbeachae D-4968]
 gi|289164621|ref|YP_003454759.1| ribonuclease III [Legionella longbeachae NSW150]
 gi|269988980|gb|EEZ95234.1| ribonuclease III [Legionella longbeachae D-4968]
 gi|288857794|emb|CBJ11638.1| putative ribonuclease III [Legionella longbeachae NSW150]
          Length = 227

 Score =  128 bits (321), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 80/218 (36%), Positives = 126/218 (57%), Gaps = 8/218 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L +R+GY F N + L++ALTH S+     E+YER EFLGD IL  +I+  LF+ F    E
Sbjct: 8   LCRRLGYHFKNSAYLKQALTHCSVG---SENYERFEFLGDSILSFVIANELFHRFPLQSE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS   + LV  E   ++A+E++L  F+ +     K       SI +D +E++ AA++L
Sbjct: 65  GQLSRLRSFLVRGEMLVELAKEIELGDFLFLGQGELKSGGFRRASILSDALEAVFAAVFL 124

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           DGGI+ A   + K ++ R L+S       +DAKT+LQE+  A+    PEY +T   G +H
Sbjct: 125 DGGIDCAKEVILKLYRIR-LESPNLNDCLKDAKTQLQEYLQAEKIPLPEYILTKIEGDEH 183

Query: 186 DPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKR 222
           +  F +   ++G+     G   ++R AEQ+AA  +L+R
Sbjct: 184 NQIFYITCSVNGMKQQTFGQGSNRRKAEQLAAKAMLER 221


>gi|148981907|ref|ZP_01816565.1| ribonuclease III [Vibrionales bacterium SWAT-3]
 gi|145960708|gb|EDK26050.1| ribonuclease III [Vibrionales bacterium SWAT-3]
          Length = 225

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 77/217 (35%), Positives = 118/217 (54%), Gaps = 6/217 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE++IGY F +  L+  ALTH S +  + E   RLEFLGD IL  +I+  L++ F    E
Sbjct: 8   LERKIGYQFNDADLIHLALTHRSAAGKHNE---RLEFLGDSILSFVIADDLYHRFPKVNE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G++S    +LV   T +++ RE +L  ++++     K       SI AD VE++I A+YL
Sbjct: 65  GDMSRMRATLVRGHTLAELGREFELGDYLKLGPGELKSGGFRRDSILADAVEAIIGAIYL 124

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D   E     +  +++ R  A++ G  ++D KT LQE+   +    P Y VT   G  H+
Sbjct: 125 DSDTETVRGIILSWYQSRLEAIQPGVSQKDPKTRLQEFLQGRRNPLPVYTVTNIKGEAHN 184

Query: 187 PRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222
             FTV  E++G+  P  G   S+R AEQ AA   L++
Sbjct: 185 QEFTVECEVAGVDKPVIGKGTSRRKAEQAAAETALEQ 221


>gi|302335832|ref|YP_003801039.1| RNAse III [Olsenella uli DSM 7084]
 gi|301319672|gb|ADK68159.1| RNAse III [Olsenella uli DSM 7084]
          Length = 242

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 113/224 (50%), Gaps = 3/224 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
           R   +E+ +G+ F+++ L+  A+TH S         SYERLEFLGD ILG +++T +F  
Sbjct: 6   RVVAVEQIVGHHFSDQRLITSAITHPSAVEGKPVSASYERLEFLGDSILGAMVATDMFER 65

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EGEL+    SLVS +T S+VA  L +   I      R      M S   +V E++
Sbjct: 66  FPGMDEGELTRLKISLVSGKTLSEVAGSLGIGELIVFGESERGTGARGMHSALENVYEAI 125

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFRS 181
           + ALYLD G E    FV +      +     R    K+ LQE    +F   PEY++    
Sbjct: 126 VGALYLDAGFEATHDFVRRTLSPHMVPELAARPLSPKSRLQEVTQREFRCAPEYRLEGEE 185

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           GP H P FT VV + G    +G   SK+ +E  AA + L R G+
Sbjct: 186 GPAHSPTFTTVVLVDGRRVGRGSGPSKKESESQAALDALDRLGL 229


>gi|237807623|ref|YP_002892063.1| ribonuclease III [Tolumonas auensis DSM 9187]
 gi|237499884|gb|ACQ92477.1| ribonuclease III [Tolumonas auensis DSM 9187]
          Length = 223

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 125/221 (56%), Gaps = 6/221 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           + S LE+++GY F N+ LL +A+TH S    + E   RLEFLGD IL L+I+ +L++ F 
Sbjct: 4   KLSRLEQKLGYPFQNKDLLVRAITHRSAGSRHNE---RLEFLGDSILSLVIAEVLYHRFP 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EG++S    +LV  +T +++ARE  L  ++ +     K       SI AD VE+LI 
Sbjct: 61  NVSEGDMSRMRATLVREKTLAELAREFALGDYLILGPGELKSGGYRRESILADTVEALIG 120

Query: 125 ALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YLD  ++   T +  ++ +R  +++ G  ++D KT LQE+   +    P Y VT   G
Sbjct: 121 AIYLDSDLDGIRTLMLNWYNERLDSIRPGVEQKDPKTRLQEFLQGRRRPLPTYAVTDVKG 180

Query: 183 PDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKR 222
             H+ +FTV   I  +  A  G+  S+R AEQ AA   L++
Sbjct: 181 EAHNQQFTVECAIDDIEAAFVGVGSSRRKAEQAAAERALEQ 221


>gi|296535948|ref|ZP_06898097.1| ribonuclease III [Roseomonas cervicalis ATCC 49957]
 gi|296263721|gb|EFH10197.1| ribonuclease III [Roseomonas cervicalis ATCC 49957]
          Length = 234

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 74/201 (36%), Positives = 109/201 (54%), Gaps = 4/201 (1%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           R+G+ F ++ LLE+ALTH S ++  ++   S ERLEFLGDR+L L+++  L   F + +E
Sbjct: 17  RLGHEFRDKGLLEQALTHRSAANPRRDMLDSNERLEFLGDRVLALVMAEWLSERFPAERE 76

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G L  R + LV+AET ++V   + L + +RV     +       ++ AD  E+LI ALYL
Sbjct: 77  GALGKRLSVLVAAETLAKVGEAIGLPAMLRVPPAEGRTGLRGRATVIADATEALIGALYL 136

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           D G+EV   F+ + W +           AK+ LQE    +    PEY+    +GP H P 
Sbjct: 137 DAGLEVPRRFIRREWAEFVAADPTPPMSAKSRLQEHTLGRAEGLPEYRQVSVTGPSHQPV 196

Query: 189 FTVVVEISGLAPAQGMDCSKR 209
           F V V   G   A+G   SKR
Sbjct: 197 FVVAVRAGGRE-AEGQGDSKR 216


>gi|15645286|ref|NP_207456.1| ribonuclease III [Helicobacter pylori 26695]
 gi|2313785|gb|AAD07725.1| ribonuclease III (rnc) [Helicobacter pylori 26695]
          Length = 240

 Score =  127 bits (320), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 123/221 (55%), Gaps = 8/221 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y+TLEK +GY+F ++ LLE+ALTH S   +     ERLEFLGD +LGL+I  LL++ F  
Sbjct: 19  YTTLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 76

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA   +++A+ + L  ++RVSS           SI +   E+L+A 
Sbjct: 77  YDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRVSSSEEISNGREKPSILSSAFEALMAG 136

Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +YL+ G+    ++    +++ +K+  L+      D KT LQE   A+F V P Y++    
Sbjct: 137 VYLEAGLAKVQKIMQNLLNRAYKRLDLEH--LFMDYKTALQELTQAQFCVIPTYQLLKEK 194

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           GPDH   F + + I     A     SK+ AEQ  A + L++
Sbjct: 195 GPDHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQALQK 235


>gi|84390104|ref|ZP_00991366.1| ribonuclease III [Vibrio splendidus 12B01]
 gi|86146359|ref|ZP_01064683.1| ribonuclease III [Vibrio sp. MED222]
 gi|218710569|ref|YP_002418190.1| ribonuclease III [Vibrio splendidus LGP32]
 gi|254807909|sp|B7VK79|RNC_VIBSL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|84376758|gb|EAP93633.1| ribonuclease III [Vibrio splendidus 12B01]
 gi|85835838|gb|EAQ53972.1| ribonuclease III [Vibrio sp. MED222]
 gi|218323588|emb|CAV19828.1| Ribonuclease III [Vibrio splendidus LGP32]
          Length = 225

 Score =  127 bits (320), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 77/217 (35%), Positives = 119/217 (54%), Gaps = 6/217 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE++IGY F +  L+  ALTH S +  + E   RLEFLGD IL  +I+  L++ F    E
Sbjct: 8   LERKIGYQFNDADLIHLALTHRSAAGKHNE---RLEFLGDSILSFVIADDLYHRFPKVNE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G++S    +LV   T +++ RE +L  ++++     K       SI AD VE++I A+YL
Sbjct: 65  GDMSRMRATLVRGHTLAELGREFELGDYLKLGPGELKSGGFRRDSILADAVEAIIGAVYL 124

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D   EV    +  +++ R  +++ G  ++D KT LQE+   +    P Y VT   G  H+
Sbjct: 125 DSDTEVVRRIILSWYQSRLESIQPGVSQKDPKTRLQEFLQGRRNPLPVYTVTNIKGEAHN 184

Query: 187 PRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222
             FTV  E++G+  P  G   S+R AEQ AA   L++
Sbjct: 185 QEFTVECEVAGVDKPVIGKGTSRRKAEQAAAETALEQ 221


>gi|7531276|sp|P56118|RNC_HELPY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
          Length = 239

 Score =  127 bits (320), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 123/221 (55%), Gaps = 8/221 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y+TLEK +GY+F ++ LLE+ALTH S   +     ERLEFLGD +LGL+I  LL++ F  
Sbjct: 18  YTTLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 75

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA   +++A+ + L  ++RVSS           SI +   E+L+A 
Sbjct: 76  YDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRVSSSEEISNGREKPSILSSAFEALMAG 135

Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +YL+ G+    ++    +++ +K+  L+      D KT LQE   A+F V P Y++    
Sbjct: 136 VYLEAGLAKVQKIMQNLLNRAYKRLDLEH--LFMDYKTALQELTQAQFCVIPTYQLLKEK 193

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           GPDH   F + + I     A     SK+ AEQ  A + L++
Sbjct: 194 GPDHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQALQK 234


>gi|146296620|ref|YP_001180391.1| ribonuclease III [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410196|gb|ABP67200.1| RNAse III [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 224

 Score =  127 bits (320), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 127/223 (56%), Gaps = 7/223 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + +EK++GY F N +LL+ ALTH S +H  +  YERLEFLGD +L L++S  LF HF   
Sbjct: 2   TDIEKKLGYRFKNPNLLKLALTHKSATHDDKSCYERLEFLGDAVLELVVSKYLFEHFPQL 61

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGEL+    ++V +ET S+VA  L+L  +I    + +K+      SI +DV+E++   +
Sbjct: 62  SEGELTNLRATIVCSETLSKVAETLNLKRYIVFGKNEKKEGFEGNKSIWSDVLEAIFGGI 121

Query: 127 YLDGGIEVAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +L+ G ++A   V    + + K+ A   GK   D KT+LQE+   +  V  +Y + + + 
Sbjct: 122 FLESGFDMAEKIVINLLEPFIKKAA--EGKLFYDYKTKLQEFIQREKNVKIKY-IDYENF 178

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            D+  RF   + I     ++G   SK+ A+Q AA   LK+ G+
Sbjct: 179 EDNLSRFKSELYIGKNKISEGYGNSKKEAQQEAALNALKKLGV 221


>gi|283953747|ref|ZP_06371278.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 414]
 gi|283794788|gb|EFC33526.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 414]
          Length = 224

 Score =  127 bits (320), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 77/220 (35%), Positives = 125/220 (56%), Gaps = 8/220 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE+ + Y F +++LL  ALTH S   SY    ERLEFLGD +L L++   LF+ F    E
Sbjct: 7   LEQNLTYEFKDKNLLMHALTHKSFKKSYNN--ERLEFLGDAVLDLVVGEYLFHKFAKDAE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    +LV+ ++ +++A  L+L  FI +S     +     +SI +D +E++I A++L
Sbjct: 65  GDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGKEKSSILSDALEAIIGAIHL 124

Query: 129 DGGIEVAGT----FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           + G E A T     ++K + Q  + +    +D KT+LQE    K G TP+Y+     GPD
Sbjct: 125 EAGFEFAKTIALRLIEKNFPQ--IDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPD 182

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           H  +F + + + G   A+ +  SK+ A+Q+AA   L++ G
Sbjct: 183 HLKQFEIALMLDGKEIARAIAGSKKEAQQMAAKIALEKLG 222


>gi|46201860|ref|ZP_00208277.1| COG0571: dsRNA-specific ribonuclease [Magnetospirillum
           magnetotacticum MS-1]
          Length = 230

 Score =  127 bits (320), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 79/205 (38%), Positives = 111/205 (54%), Gaps = 4/205 (1%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +G+AFA   LL +ALTH S     +    + YERLEFLGDR+LGL+++ +LF  F    E
Sbjct: 12  LGHAFARPELLSQALTHPSTQQHRRSQGSDPYERLEFLGDRVLGLVVAEMLFLRFPDEAE 71

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G L+ R  +LV  E  +++A E+ L   + ++             I AD  E++I ALY 
Sbjct: 72  GALARRHAALVRREAVARIANEIGLGRHLVLAKGESDAGGRTNPGILADACEAVIGALYA 131

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           D G  VA  FV   W+    ++    +DAKT LQEWA  +    P YK+  + GP H+P 
Sbjct: 132 DAGFAVAAAFVRSRWEPMMEEALAPPKDAKTGLQEWAQGRGKPLPAYKMLGQEGPPHEPT 191

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQ 213
           F + V + G+  A G   SKR AEQ
Sbjct: 192 FLMEVSVEGVGSAVGRGASKRVAEQ 216


>gi|262196731|ref|YP_003267940.1| ribonuclease III [Haliangium ochraceum DSM 14365]
 gi|262080078|gb|ACY16047.1| ribonuclease III [Haliangium ochraceum DSM 14365]
          Length = 282

 Score =  127 bits (320), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 84/219 (38%), Positives = 120/219 (54%), Gaps = 10/219 (4%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLL 59
           A+  S LE  +G+ F  R+LLE A+TH S ++         ERLEFLGD +L L +  +L
Sbjct: 42  AIDLSGLEDILGHRFRKRALLEAAVTHRSFANEQAVPCTDNERLEFLGDAVLDLAVGHML 101

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
            +      EG LSV    +VS +  S++A  L L +++R+    R+       SI AD +
Sbjct: 102 MDVHPDLSEGRLSVTRAQIVSEKGLSEIAYGLGLGTYLRLGKGERRSGGQNKASILADSL 161

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALK----SGKFRRDAKTELQEWAHAKFGVTPEY 175
           E++IAA+YLDGG + A   V + +  R L+    SG +  D KT LQE A A+   TP Y
Sbjct: 162 EAVIAAVYLDGGFDAAWKLVARLFA-RTLEEVEISGFY--DHKTRLQELAQARLKSTPAY 218

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +V   +GPDH   F VV EI G    + +  SK+ AEQ+
Sbjct: 219 RVVDETGPDHAKLFEVVAEIDGREWGRAIGSSKKRAEQM 257


>gi|224418414|ref|ZP_03656420.1| ribonuclease III [Helicobacter canadensis MIT 98-5491]
 gi|253827732|ref|ZP_04870617.1| ribonuclease III [Helicobacter canadensis MIT 98-5491]
 gi|313141944|ref|ZP_07804137.1| ribonuclease III [Helicobacter canadensis MIT 98-5491]
 gi|253511138|gb|EES89797.1| ribonuclease III [Helicobacter canadensis MIT 98-5491]
 gi|313130975|gb|EFR48592.1| ribonuclease III [Helicobacter canadensis MIT 98-5491]
          Length = 224

 Score =  127 bits (320), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 78/217 (35%), Positives = 120/217 (55%), Gaps = 8/217 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            ++ +GY F+N++LL++ALTH S   S     ERLEFLGD +L L+I   L+  F  + E
Sbjct: 6   FQQYLGYHFSNQNLLQEALTHKSAKKSTHN--ERLEFLGDAVLDLIIGEFLYKKFPHSPE 63

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELS    S+V+ +  +++AR L++  ++ +S    ++      SI ++  E+++ A+YL
Sbjct: 64  GELSKMRASMVNEKAFAKIARYLNIGEYLYISHSEEQNNGREKDSILSNAFEAIVGAIYL 123

Query: 129 DGGIEVAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           + G+E   T V    D  + +  L++     D KT LQE   A FG+TPEY V    GPD
Sbjct: 124 ESGLEKVQTIVLKILDILYPKIDLEN--LFYDYKTSLQELTQALFGITPEYVVLDSKGPD 181

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           H+  F + V I     AQ    SK+ A+Q  A   LK
Sbjct: 182 HNKEFLMGVFIQNKEYAQAKGKSKKEAQQNCAKIALK 218


>gi|39997326|ref|NP_953277.1| ribonuclease III [Geobacter sulfurreducens PCA]
 gi|81701827|sp|Q74AX1|RNC_GEOSL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|39984217|gb|AAR35604.1| ribonuclease III [Geobacter sulfurreducens PCA]
 gi|298506263|gb|ADI84986.1| ribonuclease III [Geobacter sulfurreducens KN400]
          Length = 248

 Score =  127 bits (320), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 83/220 (37%), Positives = 121/220 (55%), Gaps = 6/220 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           LE  IGY F +R  L++ALTH S    +        ERLEF GD ILG  I  +L  H+ 
Sbjct: 19  LETSIGYRFTDRRFLDEALTHRSWLNEVRSPTVPDNERLEFFGDAILGFCIGKMLLRHYP 78

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            ++EG L+   ++LV  ET + +A  ++L S++R+     +       S+ A+ +E+L+A
Sbjct: 79  ESREGALARMKSALVGEETLADLAAAVELGSYLRLGRGEERSGGRHRRSLLANALEALLA 138

Query: 125 ALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YLDGG+      VD ++  R   + +G   RD KT+ QE A A++G  P Y +   SG
Sbjct: 139 AMYLDGGMAPVERLVDAWFGPRLAGVAAGIKGRDFKTDFQELAQAQYGGLPRYVLVDTSG 198

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           P HD RFTV   +      QG   SK+ AEQ AA + L+R
Sbjct: 199 PAHDLRFTVAAYVGERLLGQGTGRSKKEAEQAAARQCLER 238


>gi|167549387|ref|ZP_02343146.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|167992712|ref|ZP_02573808.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168232159|ref|ZP_02657217.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168238326|ref|ZP_02663384.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168245106|ref|ZP_02670038.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168261368|ref|ZP_02683341.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|168466658|ref|ZP_02700512.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|168821429|ref|ZP_02833429.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194443007|ref|YP_002041844.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194450415|ref|YP_002046643.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194472117|ref|ZP_03078101.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194733998|ref|YP_002115644.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197247832|ref|YP_002147539.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197262390|ref|ZP_03162464.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|198245284|ref|YP_002216648.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|200387478|ref|ZP_03214090.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204929592|ref|ZP_03220666.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|213425276|ref|ZP_03358026.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi
           str. E02-1180]
 gi|213585348|ref|ZP_03367174.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
 gi|213613049|ref|ZP_03370875.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
 gi|213646353|ref|ZP_03376406.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi
           str. J185]
 gi|213859103|ref|ZP_03385074.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi
           str. M223]
 gi|238912699|ref|ZP_04656536.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|289825501|ref|ZP_06544708.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-3139]
 gi|194401670|gb|ACF61892.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194408719|gb|ACF68938.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194458481|gb|EDX47320.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194709500|gb|ACF88721.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|195630694|gb|EDX49286.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|197211535|gb|ACH48932.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197240645|gb|EDY23265.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197288832|gb|EDY28205.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|197939800|gb|ACH77133.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|199604576|gb|EDZ03121.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204321311|gb|EDZ06511.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205325334|gb|EDZ13173.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205329152|gb|EDZ15916.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205333647|gb|EDZ20411.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|205336135|gb|EDZ22899.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205341915|gb|EDZ28679.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205349444|gb|EDZ36075.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|312913570|dbj|BAJ37544.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|320087082|emb|CBY96851.1| RNase III, ds RNA [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|321222714|gb|EFX47785.1| Ribonuclease III [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|322613351|gb|EFY10293.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322620445|gb|EFY17310.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322625087|gb|EFY21916.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322629469|gb|EFY26245.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322633856|gb|EFY30595.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322635462|gb|EFY32173.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322639862|gb|EFY36541.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322644252|gb|EFY40796.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322649944|gb|EFY46364.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322654873|gb|EFY51190.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322658199|gb|EFY54465.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322661729|gb|EFY57947.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322669710|gb|EFY65856.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322673283|gb|EFY69388.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322674928|gb|EFY71015.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322682951|gb|EFY78969.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322685612|gb|EFY81607.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323130912|gb|ADX18342.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|323191960|gb|EFZ77198.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323200407|gb|EFZ85488.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323201307|gb|EFZ86374.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323208377|gb|EFZ93317.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323211547|gb|EFZ96385.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323215979|gb|EGA00711.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323221760|gb|EGA06168.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323225632|gb|EGA09859.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323229350|gb|EGA13474.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323235335|gb|EGA19419.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323237479|gb|EGA21542.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323245234|gb|EGA29235.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323248808|gb|EGA32735.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323254012|gb|EGA37833.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323259060|gb|EGA42708.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323261983|gb|EGA45548.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323267766|gb|EGA51247.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323269675|gb|EGA53127.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
 gi|326624403|gb|EGE30748.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
 gi|326628781|gb|EGE35124.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 245

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/225 (36%), Positives = 124/225 (55%), Gaps = 6/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 20  MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 76

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 77  HRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTVE 136

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  ++K R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 137 ALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 196

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222
              G  HD  FT+  ++SGL+ P  G   S+R AEQ AA + LK+
Sbjct: 197 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQALKK 241


>gi|291550077|emb|CBL26339.1| RNAse III [Ruminococcus torques L2-14]
          Length = 228

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/220 (36%), Positives = 116/220 (52%), Gaps = 5/220 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           R   LE++IGY F ++SL+E+AL HSS ++       E  ERLEFLGD +L L+ S  LF
Sbjct: 3   RVKELEQKIGYVFKDKSLIERALMHSSYTNEKHLKKYECNERLEFLGDAVLELVSSAYLF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N F    EGEL+    S+V   + +  AR++ L  ++ +             SI +D +E
Sbjct: 63  NEFPKVSEGELTKTRASMVCEPSLAMCARDIGLGDYLLLGKGEEATGGRKRDSITSDAME 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +LI A+YLDGG   A  F+  ++    L+  K   D+KT LQE   A       Y++   
Sbjct: 123 ALIGAIYLDGGFTNAKEFI-HHFILTDLEDKKLFYDSKTILQEIVQANMTGNVSYELIDE 181

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            GPDH+  F V   I   A  +G   SK++AEQ AA E +
Sbjct: 182 QGPDHNKIFEVEARIGRKAWGRGKGSSKKSAEQQAAYEAI 221


>gi|225025907|ref|ZP_03715099.1| hypothetical protein EUBHAL_00143 [Eubacterium hallii DSM 3353]
 gi|224956693|gb|EEG37902.1| hypothetical protein EUBHAL_00143 [Eubacterium hallii DSM 3353]
          Length = 232

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/220 (36%), Positives = 120/220 (54%), Gaps = 5/220 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLF 60
           R+  LE++IGY F N+  L  A+THSS ++      + + ERLEFLGD +L + IS  +F
Sbjct: 6   RFKGLEEKIGYTFTNKRTLALAMTHSSYANEQRGRRKANNERLEFLGDAVLEVTISDYVF 65

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             +    EG L+   +SLV   T +  AR+++L  ++ +S            SI +D  E
Sbjct: 66  REYPGYNEGRLTKLRSSLVCEYTLAICARDVELGKYLLLSRGEDATGGRERDSILSDAFE 125

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +LI A+YLDGG++ A TF+  +  +       F  DAKT LQE   A      EY +T  
Sbjct: 126 ALIGAIYLDGGMDRARTFIHTHLLKDVEDKSLFY-DAKTILQEMVQAGPDPRLEYVLTRE 184

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +GPDH+  FTV  +I G   A G   +K+ AEQ+AA + +
Sbjct: 185 AGPDHNKEFTVEAKIGGKTYAIGKGKTKKGAEQIAAYQTI 224


>gi|310658889|ref|YP_003936610.1| ribonuclease 3 [Clostridium sticklandii DSM 519]
 gi|308825667|emb|CBH21705.1| Ribonuclease 3 (Ribonuclease III) (RNase III) [Clostridium
           sticklandii]
          Length = 229

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 121/222 (54%), Gaps = 8/222 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           L+K+I Y F +  LL++ALTHSS S+ Y++    + ERLEFLGD ILGL+IS  LF    
Sbjct: 8   LQKKINYEFQDLKLLKEALTHSSYSNEYKKIKNRNNERLEFLGDSILGLIISNYLFRLKK 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGEL+    ++V   +   +A+ + L  ++ +             SI AD  E+LIA
Sbjct: 68  ELPEGELTKIRAAIVCERSLKDIAKSIHLGEYLYLGKGEESTGGRTRDSILADATEALIA 127

Query: 125 ALYLDGGIEVAGTFVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           A+YLDGG   A  FV ++      +A++ GK  RD KT+LQE           YK+  + 
Sbjct: 128 AIYLDGGFRKATDFVLEHMGDIISQAIQ-GKIMRDYKTQLQELIQKDNKENIIYKLVDQL 186

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           GPDHD  F + V +       G+  SK+ AEQ AA + +++E
Sbjct: 187 GPDHDKTFKMNVFLGEKLIGTGIGKSKKEAEQEAAKDAMEKE 228


>gi|16761493|ref|NP_457110.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|22654063|sp|Q8Z4K4|RNC_SALTI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|25289227|pir||AC0829 ribonuclease III (EC 3.1.26.3) [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16503793|emb|CAD02783.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 226

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/225 (36%), Positives = 123/225 (54%), Gaps = 6/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  ++K R   +  G  ++D KT LQE+        P Y V 
Sbjct: 118 ALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGHHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222
              G  HD  FT+  ++SGL+ P  G   S+R AEQ AA + LK+
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQALKK 222


>gi|317180453|dbj|BAJ58239.1| ribonuclease III [Helicobacter pylori F32]
          Length = 238

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 123/221 (55%), Gaps = 8/221 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y+TLEK +GY+F ++ LLE+ALTH S   +     ERLEFLGD +LGL+I  LL++ F  
Sbjct: 17  YATLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 74

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA   +++A+ + L  ++RVSS           SI +   E+L+A 
Sbjct: 75  YDEGKLSKLRASIVSAHGFTKLAKVIALQDYLRVSSSEEISKGREKPSILSSAFEALMAG 134

Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +YL+ G+    ++    +++ +K+  L+      D KT LQE   A+F V P Y++    
Sbjct: 135 VYLEAGLAKVRKITQNLLNRAYKRLDLEH--LFMDYKTALQELTQAQFCVIPTYQLLKEK 192

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           GPDH   F + + I     A     SK+ AEQ  A + L++
Sbjct: 193 GPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQK 233


>gi|283786183|ref|YP_003366048.1| Ribonuclease III [Citrobacter rodentium ICC168]
 gi|282949637|emb|CBG89256.1| Ribonuclease III [Citrobacter rodentium ICC168]
          Length = 226

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 124/225 (55%), Gaps = 6/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFTHQELLQQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGYRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222
              G  HD  FT+  ++SGL+ P  G   S+R AEQ AA + LK+
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQALKK 222


>gi|317181975|dbj|BAJ59759.1| ribonuclease III [Helicobacter pylori F57]
          Length = 238

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 123/221 (55%), Gaps = 8/221 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y+TLEK +GY+F ++ LLE+ALTH S   +     ERLEFLGD +LGL+I  LL++ F  
Sbjct: 17  YATLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 74

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA   +++A+ + L  ++RVSS           SI +   E+L+A 
Sbjct: 75  YDEGKLSKLRASIVSAHGFTKLAKVIALQDYLRVSSSEEISNGREKPSILSSAFEALMAG 134

Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +YL+ G+    ++    +++ +K+  L+      D KT LQE   A+F V P Y++    
Sbjct: 135 VYLEAGLAKVRKITQNLLNRTYKRLDLEH--LFMDYKTALQELTQAQFCVIPTYQLLKEK 192

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           GPDH   F + + I     A     SK+ AEQ  A + L++
Sbjct: 193 GPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQK 233


>gi|71083743|ref|YP_266463.1| ribonuclease III [Candidatus Pelagibacter ubique HTCC1062]
 gi|91763221|ref|ZP_01265185.1| ribonuclease III [Candidatus Pelagibacter ubique HTCC1002]
 gi|90101634|sp|Q4FLS9|RNC_PELUB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|71062856|gb|AAZ21859.1| ribonuclease III [Candidatus Pelagibacter ubique HTCC1062]
 gi|91717634|gb|EAS84285.1| ribonuclease III [Candidatus Pelagibacter ubique HTCC1002]
          Length = 222

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/205 (35%), Positives = 114/205 (55%), Gaps = 3/205 (1%)

Query: 17  FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           F+++ +  K+LTH S       + E++EFLGDR+LGL+I+  L   +   KEG L  +F 
Sbjct: 16  FSDQKIFIKSLTHKSFDSI--NNNEKIEFLGDRVLGLIIAKKLLELYPDEKEGVLDKKFA 73

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           SLV+ + C ++A++++L  +I V +   K +      I AD +E+LI A+YLD G+    
Sbjct: 74  SLVNKKKCLEIAKKIELEKYILVLNPKNKKI-EIEDKIVADCLEALIGAIYLDKGLNFTE 132

Query: 137 TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
            F+   W +    S   + DAKT+LQE++   F V P YK+   +GP H P F V V++ 
Sbjct: 133 RFILNLWSEHITASVITQIDAKTKLQEYSLKIFKVLPIYKLISNTGPRHKPLFKVAVKLK 192

Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLK 221
                     SK+ AEQ AA+  L+
Sbjct: 193 NTKFFTAEGTSKKDAEQNAASLCLQ 217


>gi|86152331|ref|ZP_01070542.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 260.94]
 gi|315125039|ref|YP_004067043.1| ribonuclease III [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
 gi|85840820|gb|EAQ58071.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 260.94]
 gi|315018761|gb|ADT66854.1| ribonuclease III [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
          Length = 224

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/220 (35%), Positives = 125/220 (56%), Gaps = 8/220 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE+ + Y F +++LL  ALTH S   SY    ERLEFLGD +L L++   LF+ F    E
Sbjct: 7   LERSLTYEFKDKNLLIHALTHKSFKKSYNN--ERLEFLGDAVLDLVVGEYLFHKFAKDAE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    +LV+ ++ +++A  L+L  FI +S   + +      SI +D +E++I A++L
Sbjct: 65  GDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEKNNGGKEKPSILSDALEAIIGAIHL 124

Query: 129 DGGIEVAGT----FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           + G E A T     ++K + Q  + +    +D KT+LQE    K G TP+Y+     GPD
Sbjct: 125 EAGFEFAKTIALRLIEKNFPQ--IDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPD 182

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           H  +F + + + G   A+ +  SK+ A+Q+AA   L++ G
Sbjct: 183 HLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 222


>gi|207092393|ref|ZP_03240180.1| ribonuclease III [Helicobacter pylori HPKX_438_AG0C1]
          Length = 239

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 123/221 (55%), Gaps = 8/221 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y+TLEK +GY+F ++ LLE+ALTH S   +     ERLEFLGD +LGL+I  LL++ F  
Sbjct: 18  YTTLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 75

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA+  +++A+ + L  ++RVSS           SI +   E+L+A 
Sbjct: 76  YDEGKLSKLRASIVSAQGFTKLAKVISLQDYLRVSSSEEISKGREKPSILSSAFEALMAG 135

Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +YL+ G+    ++    +++ +K+  L+      D KT LQE   A+F V P Y++    
Sbjct: 136 VYLEAGLAKVRKIMQNLLNRAYKRLDLEH--LSVDYKTALQELTQAQFCVIPTYQLLKEK 193

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           GPDH   F + + I     A     SK+ AEQ  A   L++
Sbjct: 194 GPDHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYYALQK 234


>gi|297717874|gb|ADI50080.1| ribonuclease III [Candidatus Odyssella thessalonicensis L13]
          Length = 211

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 125/211 (59%), Gaps = 7/211 (3%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71
           ++ + F + SL +KA+TH S        +ERLEFLGDR+LG++++ +L+  F   KEG+L
Sbjct: 2   KLKFTFKDPSLFDKAITHPSFRRRKVNDFERLEFLGDRVLGIIVAEMLYKAFPLEKEGDL 61

Query: 72  SVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           + R   L+S + C ++A E++L   I+ V + L  +     +++ +D +E+LI A++LD 
Sbjct: 62  AKRQAVLISRDVCQEIAYEIELHEDIKVVGTGLDGN-----SAVLSDAMEALIGAMFLDQ 116

Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           G+EV    +   W++R   +    +D K+ LQEW  ++    P Y++  ++GP H P F 
Sbjct: 117 GLEVTRQHILPLWEKRLAITQAPPKDHKSLLQEWTQSRGLGIPAYELVNQTGPAHAPEFE 176

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +++++   +  +    S++ AEQ AA ++L+
Sbjct: 177 ILLKVDDHS-VKARGKSRKLAEQEAAKQMLQ 206


>gi|21672530|ref|NP_660597.1| ribonuclease III [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
 gi|25009123|sp|Q8K9R1|RNC_BUCAP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|21623153|gb|AAM67808.1| ribonuclease III [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
          Length = 226

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 127/228 (55%), Gaps = 6/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + +++ +GY F ++ LL++ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 1   MNHIVANKIQQILGYTFTHQELLKQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            HF    EG++S    +LV   T +++A E DL  ++++     K       SI A+ VE
Sbjct: 58  QHFPYIDEGDMSRMRATLVRGNTLAEIAYEFDLGEYLQLGQGELKSGGFRRESILANTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI ++YLD  I+     + K++++R   +  G  ++D KT LQE+  +K    P Y + 
Sbjct: 118 ALIGSIYLDSNIKTVEELILKWYEKRLEKISPGDTQKDPKTRLQEYLQSKHLSLPSYFIV 177

Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREGI 225
              G  H+  FT+  E+S L+ +  G   S+R AEQ AA + L + G+
Sbjct: 178 EVYGEAHNQLFTIHCEVSTLSTSFIGKGTSRRKAEQDAARKALIKLGV 225


>gi|262273710|ref|ZP_06051523.1| ribonuclease III [Grimontia hollisae CIP 101886]
 gi|262222125|gb|EEY73437.1| ribonuclease III [Grimontia hollisae CIP 101886]
          Length = 224

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/204 (36%), Positives = 114/204 (55%), Gaps = 6/204 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L++RIGY F + +LL  ALTH S S ++ E   RLEFLGD IL  +++  L++ F +  E
Sbjct: 8   LQRRIGYTFNDTTLLSLALTHRSASGNHNE---RLEFLGDSILSFVVADDLYHRFPNVDE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G++S    +LV   T +++ RE +L   +++     K       SI AD VE++I A+YL
Sbjct: 65  GDMSRMRATLVRGNTLAELGREFELGDVLQLGPGELKSGGFRRDSILADAVEAIIGAIYL 124

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D  +E     V  ++KQR   ++ G  ++D KT LQE+   +    P Y VT   G  H+
Sbjct: 125 DSSLETVRGIVLNWYKQRLETIQPGANQKDPKTRLQEFLQGRRKPLPAYNVTKVQGEAHN 184

Query: 187 PRFTVVVEISGL-APAQGMDCSKR 209
            +FTV  E++GL  P  G   S+R
Sbjct: 185 QQFTVECEVAGLDRPVVGKGSSRR 208


>gi|169342696|ref|ZP_02863737.1| ribonuclease III [Clostridium perfringens C str. JGS1495]
 gi|169299202|gb|EDS81272.1| ribonuclease III [Clostridium perfringens C str. JGS1495]
          Length = 237

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/229 (37%), Positives = 125/229 (54%), Gaps = 6/229 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTL 58
           M  +    +EK IG  F N+ +L  ALTHSS ++ +++    ERLEFLGD +L L ++  
Sbjct: 1   MKDINLIEVEKLIGIEFENKGVLITALTHSSYANQFKDVKYNERLEFLGDSVLQLCVTKY 60

Query: 59  LFNHFDSAKEGELSVRFNSLVSAE-TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
           LFN++    EGEL+ +  +LV  E +  +V++ L L  +IR+S           TSIQAD
Sbjct: 61  LFNNYKDKSEGELT-KIRALVVCENSLHKVSKNLSLGKYIRMSKGEELTGGRERTSIQAD 119

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEY 175
            +E++IAA+YLD GIEVA  F+ + +K    K  + +   D KT LQE       V   Y
Sbjct: 120 ALEAVIAAVYLDKGIEVANDFILRNFKDVIDKAINEEIILDFKTRLQEVLQKNGEVNIVY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            +    GP H  +F   + I+     QG+  SK+ +EQ AA   L+R G
Sbjct: 180 NLVKHEGPPHRRKFFTDLLINNEVMGQGVGFSKKESEQNAAKAALQRLG 228


>gi|94676727|ref|YP_588731.1| ribonuclease III [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
 gi|94219877|gb|ABF14036.1| ribonuclease III [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
          Length = 225

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/218 (38%), Positives = 124/218 (56%), Gaps = 6/218 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L+K+IGY F N++LL +ALTH S S+ + E   RLEFLGD IL  +I+  L+  F   
Sbjct: 6   NNLQKKIGYYFQNQNLLLQALTHRSASNKHNE---RLEFLGDSILSYVIAHALYQRFQYI 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG++S    +LV   T +++AREL+L++ +R+     K       SI AD VE+LI ++
Sbjct: 63  NEGDMSRMRATLVRGNTLAEIARELNLSTCLRLGIGELKSGGLSRDSILADAVEALIGSI 122

Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           +LD  I     F+   ++ R  K   G+ ++D KT LQE+   +    P Y +   SG  
Sbjct: 123 FLDSNIFTVEKFILNLYRSRLNKIIPGERQKDPKTRLQEYLQGQHMPLPIYIIVQISGET 182

Query: 185 HDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221
           HD RF +  +++ LA P  G   S+R AEQ AA + LK
Sbjct: 183 HDQRFIIHCQVNNLANPIIGHGSSRRQAEQAAAQQALK 220


>gi|289423974|ref|ZP_06425766.1| ribonuclease III [Peptostreptococcus anaerobius 653-L]
 gi|289155610|gb|EFD04283.1| ribonuclease III [Peptostreptococcus anaerobius 653-L]
          Length = 236

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 126/224 (56%), Gaps = 5/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLFNH 62
           + S+ EK+IGY F ++  ++ ALTHSS ++ ++E    ERLEFLGD +LGL++S  LF+ 
Sbjct: 11  KISSFEKKIGYIFNDKENIQVALTHSSFANEHKEYKYNERLEFLGDSVLGLVVSDYLFSV 70

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
                EG+L+    ++V  E+ S VAR+L+L  ++ + +  R+   S   SI AD  E++
Sbjct: 71  RTDLPEGQLTKFRANVVCEESLSVVARKLNLGEYLLLGNGERQSGGSDRDSILADATEAV 130

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           IAA+Y+DGG + A  F+    +    K+  G   RD KT LQE   +K G    Y++   
Sbjct: 131 IAAIYIDGGFDKAKEFIMYNLRDVIAKTIDGNIFRDYKTILQEVIQSKNGRIS-YRLVQE 189

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            GPDHD  F + V         G+  +K+ AE+ AA   L+  G
Sbjct: 190 KGPDHDKVFEMEVRSGNKVLGFGVGKNKKDAEKEAAKNALENMG 233


>gi|257440564|ref|ZP_05616319.1| ribonuclease III [Faecalibacterium prausnitzii A2-165]
 gi|257196887|gb|EEU95171.1| ribonuclease III [Faecalibacterium prausnitzii A2-165]
          Length = 224

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/221 (38%), Positives = 120/221 (54%), Gaps = 9/221 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65
           LE  IGY F N  LLE ALTH+S ++  +   +  ERLEFLGD +L ++ +  LF+ +  
Sbjct: 5   LETIIGYKFKNPKLLETALTHTSYANESRTPVQHNERLEFLGDSVLQIVSADYLFHAYAD 64

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+L+   +SLVS     Q A+E++L  ++R+     +       S+ +D  E++IAA
Sbjct: 65  RPEGDLTRIRSSLVSEGALFQFAQEINLGEYLRLGRGEERCGGRTRPSVVSDAFEAVIAA 124

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           LYLDGG+EVA +F+  +     +  GK    D KT LQE           Y V   SGPD
Sbjct: 125 LYLDGGMEVAKSFILPF-----ITEGKHAEADYKTRLQEIVQQNPEERLSYVVEQESGPD 179

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           HD  F V V  +    A+G   SK+ AEQ AA E LK  G+
Sbjct: 180 HDKHFVVAVRFNSDKVARGEGRSKKMAEQHAAREALKLLGV 220


>gi|308063545|gb|ADO05432.1| ribonuclease III [Helicobacter pylori Sat464]
          Length = 238

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 123/221 (55%), Gaps = 8/221 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y+TLEK +GY+F ++ LLE+ALTH S   +     ERLEFLGD +LGL+I  LL++ F  
Sbjct: 17  YATLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 74

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA   +++A+ + L  ++RVSS           SI +   E+L+A 
Sbjct: 75  YDEGKLSKLRASIVSAHGFTKLAKVIALQDYLRVSSSEEISNGREKPSILSSAFEALMAG 134

Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +YL+ G+    ++    +++ +K+  L+      D KT LQE   A+F V P Y++    
Sbjct: 135 VYLEAGLAKVQKIIQNLLNRAYKRLDLEH--LFMDYKTALQELTQAQFCVIPTYQLLKEK 192

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           GPDH   F + + I     A     SK+ AEQ  A + L++
Sbjct: 193 GPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQK 233


>gi|291278588|ref|YP_003495423.1| ribonuclease III [Deferribacter desulfuricans SSM1]
 gi|290753290|dbj|BAI79667.1| ribonuclease III [Deferribacter desulfuricans SSM1]
          Length = 231

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/225 (36%), Positives = 127/225 (56%), Gaps = 22/225 (9%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE+ IGY F N+SLL +ALTHSS ++    + +YERLEFLGD +L L+++  L   +   
Sbjct: 7   LEELIGYRFKNKSLLLEALTHSSYAYEKKLKRNYERLEFLGDSVLQLIVTEYLVIKYKEF 66

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS---FMTSIQADVVESLI 123
           KEG LS   +  VS +  S++A ++ L  F+ +    + ++ S      SI AD+ ESL+
Sbjct: 67  KEGVLSKYRSFFVSEDIISEIALKIRLNDFLMLG---KGEIVSGGYTKPSILADIFESLL 123

Query: 124 AALYLDGG--------IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
            A+YLDGG        + +    +D+Y ++  +       D KTELQ+    KFG  PEY
Sbjct: 124 GAVYLDGGYNEARRIVLMLMSELMDEYIEKGII------IDPKTELQKITQQKFGYIPEY 177

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           KV    GP+HD  FTV ++++      G+  +K+ AE  AA++ L
Sbjct: 178 KVLKEEGPEHDKVFTVELKLADGNKFIGVGRNKKKAEIDAASKAL 222


>gi|217033708|ref|ZP_03439135.1| hypothetical protein HP9810_5g50 [Helicobacter pylori 98-10]
 gi|216943897|gb|EEC23334.1| hypothetical protein HP9810_5g50 [Helicobacter pylori 98-10]
          Length = 238

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 123/221 (55%), Gaps = 8/221 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y+TLEK +GY+F ++ LLE+ALTH S   +     ERLEFLGD +LGL+I  LL++ F  
Sbjct: 17  YTTLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 74

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA   +++A+ + L  ++RVSS           SI +   E+L+A 
Sbjct: 75  YDEGKLSKLRASIVSAHGFTKLAKVIALQDYLRVSSSEEISNGREKPSILSSAFEALMAG 134

Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +YL+ G+    ++    +++ +K+  L+      D KT LQE   A+F V P Y++    
Sbjct: 135 VYLEAGLAKVRKIIQNLLNRAYKRLDLEH--LFMDYKTALQELTQAQFCVIPTYQLLKEK 192

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           GPDH   F + + I     A     SK+ AEQ  A + L++
Sbjct: 193 GPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQK 233


>gi|87118656|ref|ZP_01074555.1| ribonuclease III [Marinomonas sp. MED121]
 gi|86166290|gb|EAQ67556.1| ribonuclease III [Marinomonas sp. MED121]
          Length = 217

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/212 (39%), Positives = 118/212 (55%), Gaps = 8/212 (3%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           +GY FA+  LLE ALTH S      ++ ERLEFLGD IL  +I+  LF+ F  AKEGELS
Sbjct: 1   MGYFFADLGLLELALTHRSFG---GKNNERLEFLGDSILNYVIAEDLFHRFPKAKEGELS 57

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
               SLV  ET +++ARE  L  ++++ +   K       SI  D VE +I A++LD G+
Sbjct: 58  RLRASLVKGETLAEIAREFKLGDYLKLGAGELKSGGFRRDSILEDAVEGIIGAIFLDAGM 117

Query: 133 EVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
           +     +  +++ R L +   +   +DAKT LQE+  A+    P+Y+VT   G  HD  F
Sbjct: 118 DTCSERILSWYESR-LNATSLKIVTKDAKTRLQEFLQARKHALPQYEVTEVLGEPHDQTF 176

Query: 190 TVVVEISGLA-PAQGMDCSKRAAEQVAAAEVL 220
            V   I   A P +G   S+R AEQ AA + L
Sbjct: 177 YVHCVIELFADPIEGKGNSRRIAEQKAATQAL 208


>gi|261838098|gb|ACX97864.1| ribonuclease III [Helicobacter pylori 51]
          Length = 239

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 123/221 (55%), Gaps = 8/221 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y+TLEK +GY+F ++ LLE+ALTH S   +     ERLEFLGD +LGL+I  LL++ F  
Sbjct: 18  YATLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 75

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA   +++A+ + L  ++RVSS           SI +   E+L+A 
Sbjct: 76  YDEGKLSKLRASIVSAHGFTKLAKVIALQDYLRVSSSEEISKGREKPSILSSAFEALMAG 135

Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +YL+ G+    ++    +++ +K+  L+      D KT LQE   A+F V P Y++    
Sbjct: 136 VYLEAGLAKVRKIIQNLLNRAYKRLDLEH--LFMDYKTALQELTQAQFCVIPTYQLLKEK 193

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           GPDH   F + + I     A     SK+ AEQ  A + L++
Sbjct: 194 GPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQK 234


>gi|308061992|gb|ADO03880.1| ribonuclease III [Helicobacter pylori Cuz20]
          Length = 239

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 123/221 (55%), Gaps = 8/221 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y+TLEK +GY+F ++ LLE+ALTH S   +     ERLEFLGD +LGL+I  LL++ F  
Sbjct: 18  YATLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 75

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA   +++A+ + L  ++RVSS           SI +   E+L+A 
Sbjct: 76  YDEGKLSKLRASIVSAHGFTKLAKVIALQDYLRVSSSEEISNGREKPSILSSAFEALMAG 135

Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +YL+ G+    ++    +++ +K+  L+      D KT LQE   A+F V P Y++    
Sbjct: 136 VYLEAGLAKVRKIIQNLLNRAYKRLDLEH--LFMDYKTALQELTQAQFCVIPTYQLLKEK 193

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           GPDH   F + + I     A     SK+ AEQ  A + L++
Sbjct: 194 GPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQK 234


>gi|24372926|ref|NP_716968.1| ribonuclease III [Shewanella oneidensis MR-1]
 gi|81462673|sp|Q8EH81|RNC_SHEON RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|24347062|gb|AAN54413.1|AE015579_2 ribonuclease III [Shewanella oneidensis MR-1]
          Length = 226

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/216 (37%), Positives = 122/216 (56%), Gaps = 6/216 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L + +GY F N  LL +ALTH S ++ + E   RLEFLGD IL ++IS  L++ F  A E
Sbjct: 10  LCRTLGYEFKNLDLLTQALTHRSAANKHNE---RLEFLGDSILSIVISDALYHQFPKATE 66

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    +LV  +T + +A+   L  ++ +     K       SI AD VE++I A+YL
Sbjct: 67  GDLSRMRATLVRGDTLTLIAQAFKLGDYLFLGPGELKSGGFRRESILADAVEAIIGAIYL 126

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D  +EV    +  ++ +R   ++ G  ++DAKT LQE+        P+Y+V    G  HD
Sbjct: 127 DSDLEVCRQLLLNWYAERLAEIQPGINQKDAKTLLQEYLQGLKKPLPDYQVINIEGDAHD 186

Query: 187 PRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLK 221
             FTV   I  L+ +  G+  S+R AEQ+AAA+VL+
Sbjct: 187 QTFTVECRIDDLSQSVIGVASSRRKAEQIAAAQVLE 222


>gi|114048421|ref|YP_738971.1| ribonuclease III [Shewanella sp. MR-7]
 gi|122944480|sp|Q0HSJ1|RNC_SHESR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|113889863|gb|ABI43914.1| RNAse III [Shewanella sp. MR-7]
          Length = 226

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/216 (37%), Positives = 122/216 (56%), Gaps = 6/216 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L + +GY F N  LL +ALTH S ++ + E   RLEFLGD IL ++IS  L++ F  A E
Sbjct: 10  LCRTLGYEFKNLELLTQALTHRSAANKHNE---RLEFLGDSILSIVISDALYHQFPKATE 66

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    +LV  +T + +A+   L  ++ +     K       SI AD VE++I A+YL
Sbjct: 67  GDLSRMRATLVRGDTLTLIAKAFKLGDYLFLGPGELKSGGFRRESILADAVEAIIGAIYL 126

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D  +EV    +  ++ +R   ++ G  ++DAKT LQE+        P+Y+V    G  HD
Sbjct: 127 DSDLEVCRKLLLHWYAERLAEIQPGVNQKDAKTLLQEYLQGLKKPLPDYQVINIEGDAHD 186

Query: 187 PRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLK 221
             FTV   I  L+ +  G+  S+R AEQ+AAA+VL+
Sbjct: 187 QTFTVECRIDDLSESVIGVASSRRKAEQIAAAQVLE 222


>gi|117921465|ref|YP_870657.1| ribonuclease III [Shewanella sp. ANA-3]
 gi|189043353|sp|A0KZN2|RNC_SHESA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|117613797|gb|ABK49251.1| RNAse III [Shewanella sp. ANA-3]
          Length = 226

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/216 (37%), Positives = 122/216 (56%), Gaps = 6/216 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L + +GY F N  LL +ALTH S ++ + E   RLEFLGD IL ++IS  L++ F  A E
Sbjct: 10  LCRTLGYEFKNIDLLTQALTHRSAANKHNE---RLEFLGDSILSIVISDALYHQFPKATE 66

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    +LV  +T + +A+   L  ++ +     K       SI AD VE++I A+YL
Sbjct: 67  GDLSRMRATLVRGDTLTLIAKAFKLGDYLFLGPGELKSGGFRRESILADAVEAIIGAIYL 126

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D  +EV    +  ++ +R   ++ G  ++DAKT LQE+        P+Y+V    G  HD
Sbjct: 127 DSDLEVCRKLLLHWYAERLAEIQPGVNQKDAKTLLQEYLQGLKKPLPDYQVINIEGDAHD 186

Query: 187 PRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLK 221
             FTV   I  L+ +  G+  S+R AEQ+AAA+VL+
Sbjct: 187 QTFTVECRIDDLSESVIGVASSRRKAEQIAAAQVLE 222


>gi|329297705|ref|ZP_08255041.1| ribonuclease III [Plautia stali symbiont]
          Length = 226

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 126/228 (55%), Gaps = 6/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F +  LL++ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 1   MNPILINKLQRKLGYTFTHPELLQQALTHRSASSKHNE---RLEFLGDSILSYVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+ S   K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEMAREFELGECLRLGSGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGIFLDSNIQTVEKLILDWYQNRLEQISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKREGI 225
              G  HD  FT+  ++SG+A P  G+  S+R AEQ AA + L + G+
Sbjct: 178 QVRGEAHDQEFTIHCQVSGMAEPVVGVGSSRRKAEQAAAEQALIKLGL 225


>gi|182417248|ref|ZP_02948601.1| ribonuclease III [Clostridium butyricum 5521]
 gi|237669155|ref|ZP_04529139.1| ribonuclease III [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182378894|gb|EDT76407.1| ribonuclease III [Clostridium butyricum 5521]
 gi|237657503|gb|EEP55059.1| ribonuclease III [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 232

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 124/226 (54%), Gaps = 4/226 (1%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58
           M+      +E+ +G  F N +LL+ ALTHSS ++ ++  E  ERLEFLGD +L L I+  
Sbjct: 1   MNKYTLKEIEENLGVCFNNPTLLKTALTHSSFANQFKDAEYNERLEFLGDAVLQLCITEY 60

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LFN+F S  EGEL+   + +V   +  ++A++L L  +IR+S            SIQAD 
Sbjct: 61  LFNNFKSKSEGELTKTRSLIVCENSLYEIAKKLHLGEYIRMSKGEELTGGRERISIQADA 120

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYK 176
           VE++IAA+YLD GI     F+  ++++   K  + +   D KT+LQE+      V+  Y+
Sbjct: 121 VEAVIAAVYLDKGIGFVRDFILLHFEEIIKKAINNEIILDFKTKLQEFLQKDGEVSIHYE 180

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +    GP H  +F   V I      +G   SK+ AEQ AA + L +
Sbjct: 181 LIKHEGPPHRRKFFTNVVIENNIMGEGCGYSKKEAEQNAAKQALMK 226


>gi|149173983|ref|ZP_01852611.1| ribonuclease III [Planctomyces maris DSM 8797]
 gi|148846963|gb|EDL61298.1| ribonuclease III [Planctomyces maris DSM 8797]
          Length = 247

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/216 (37%), Positives = 122/216 (56%), Gaps = 7/216 (3%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           ++ +GY F +  LL+  LTH+S + +  +S ERLEFLGD ILG ++   LF+ F +A EG
Sbjct: 18  QQNLGYRFVDCELLKSCLTHTSAAKTRMDSNERLEFLGDAILGSIVCEKLFDQFPNAPEG 77

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           EL+   +++VS  TC+++ARE  L  FI V   L     +   S+ A + E+LIA +YLD
Sbjct: 78  ELTRIKSAVVSRNTCTRLAREKGLDRFIFVGKGLAM-TENLPESLLAGMFEALIAGIYLD 136

Query: 130 GGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           GGI     F+D   ++   K+ +     + K+ LQ+++  KF  TP Y+V    GPDH  
Sbjct: 137 GGIAPVHQFLDPLIERENSKASRSVHGYNYKSLLQQYSQKKFSQTPIYEVLDEKGPDHSK 196

Query: 188 RF--TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            F  T ++      PA G   +K+ AEQ AA   L+
Sbjct: 197 FFKVTAIIGEHKYEPAWG--STKKEAEQRAAYNALR 230


>gi|18310700|ref|NP_562634.1| ribonuclease III [Clostridium perfringens str. 13]
 gi|168210649|ref|ZP_02636274.1| ribonuclease III [Clostridium perfringens B str. ATCC 3626]
 gi|168214195|ref|ZP_02639820.1| ribonuclease III [Clostridium perfringens CPE str. F4969]
 gi|168217005|ref|ZP_02642630.1| ribonuclease III [Clostridium perfringens NCTC 8239]
 gi|182625857|ref|ZP_02953623.1| ribonuclease III [Clostridium perfringens D str. JGS1721]
 gi|22654058|sp|Q8XJN8|RNC_CLOPE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|18145381|dbj|BAB81424.1| ribonuclease III [Clostridium perfringens str. 13]
 gi|170711273|gb|EDT23455.1| ribonuclease III [Clostridium perfringens B str. ATCC 3626]
 gi|170714262|gb|EDT26444.1| ribonuclease III [Clostridium perfringens CPE str. F4969]
 gi|177908891|gb|EDT71383.1| ribonuclease III [Clostridium perfringens D str. JGS1721]
 gi|182380899|gb|EDT78378.1| ribonuclease III [Clostridium perfringens NCTC 8239]
          Length = 237

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/229 (37%), Positives = 125/229 (54%), Gaps = 6/229 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTL 58
           M  +    +EK IG  F N+ +L  ALTHSS ++ +++    ERLEFLGD +L L ++  
Sbjct: 1   MKDINLIEVEKLIGIEFENKGVLITALTHSSYANQFKDVKYNERLEFLGDSVLQLCVTKY 60

Query: 59  LFNHFDSAKEGELSVRFNSLVSAE-TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
           LFN++    EGEL+ +  +LV  E +  +V++ L L  +IR+S           TSIQAD
Sbjct: 61  LFNNYKDKSEGELT-KIRALVVCENSLHKVSKNLSLGKYIRMSKGEELTGGRERTSIQAD 119

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEY 175
            +E++IAA+YLD GIEVA  F+ + +K    K  + +   D KT LQE       V   Y
Sbjct: 120 ALEAVIAAVYLDKGIEVANDFILRNFKDVIDKAINEEIILDFKTRLQEVLQKNGEVNIVY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            +    GP H  +F   + I+     QG+  SK+ +EQ AA   L+R G
Sbjct: 180 NLVKHEGPPHRRKFFTDLLINNEIMGQGVGFSKKESEQNAAKAALQRLG 228


>gi|88858204|ref|ZP_01132846.1| RNase III, dsRNA [Pseudoalteromonas tunicata D2]
 gi|88819821|gb|EAR29634.1| RNase III, dsRNA [Pseudoalteromonas tunicata D2]
          Length = 225

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/217 (35%), Positives = 118/217 (54%), Gaps = 5/217 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L  +IGY F N +LLE+A+TH S  H  Q + ERLEFLGD IL  +I+  L+  F  +
Sbjct: 6   TDLYTKIGYTFNNVALLEQAMTHRS--HKGQHN-ERLEFLGDSILSFVIANELYKRFPKS 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +EG+LS   ++LV  +T ++   E +L  ++R+     K       S  AD VE++I A+
Sbjct: 63  REGDLSRMRSTLVRGQTLAEFGLEFNLGDYLRLGPGELKSGGYRRESTLADAVEAIIGAV 122

Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           +LD GI+     +  ++K R   +  G  ++D KT LQE+  A+    P Y V    G  
Sbjct: 123 FLDSGIDTCSNLILSWYKFRLDEISPGLNQKDPKTLLQEYLQARKLPLPNYTVIDTKGQA 182

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           H+  FTV   + G+     +  S+R AEQ AA + LK
Sbjct: 183 HNQSFTVECVVEGMNSIVSVGSSRRKAEQKAAEKALK 219


>gi|120599802|ref|YP_964376.1| ribonuclease III [Shewanella sp. W3-18-1]
 gi|146292262|ref|YP_001182686.1| ribonuclease III [Shewanella putrefaciens CN-32]
 gi|189043352|sp|A4Y4K4|RNC_SHEPC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043355|sp|A1RMC7|RNC_SHESW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|120559895|gb|ABM25822.1| RNAse III [Shewanella sp. W3-18-1]
 gi|145563952|gb|ABP74887.1| RNAse III [Shewanella putrefaciens CN-32]
 gi|319425561|gb|ADV53635.1| ribonuclease III [Shewanella putrefaciens 200]
          Length = 226

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/216 (37%), Positives = 122/216 (56%), Gaps = 6/216 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L + +GY F    LL +ALTH S ++ + E   RLEFLGD IL ++IS  L++ F  A E
Sbjct: 10  LCRTLGYEFTQIELLTQALTHRSAANKHNE---RLEFLGDSILSIVISDALYHQFPKATE 66

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    +LV  +T + +A+E  L  ++ +     K       SI AD VE++I A+YL
Sbjct: 67  GDLSRMRATLVRGDTLTIIAQEFKLGDYLYLGPGELKSGGFRRESILADAVEAIIGAIYL 126

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D  +EV    +  ++ +R   ++ G  ++DAKT LQE+        P+Y+V    G  HD
Sbjct: 127 DSDLEVCRKLLLTWYAERLAEIQPGVSQKDAKTLLQEYLQGLKKPLPDYQVINIEGDAHD 186

Query: 187 PRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLK 221
             FTV   I  L+ +  G+  S+R AEQ+AAA+VL+
Sbjct: 187 QTFTVECRIEDLSQSVIGVASSRRKAEQIAAAQVLE 222


>gi|113971183|ref|YP_734976.1| ribonuclease III [Shewanella sp. MR-4]
 gi|122943634|sp|Q0HG98|RNC_SHESM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|113885867|gb|ABI39919.1| RNAse III [Shewanella sp. MR-4]
          Length = 226

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/216 (37%), Positives = 122/216 (56%), Gaps = 6/216 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L + +GY F N  LL +ALTH S ++ + E   RLEFLGD IL ++IS  L++ F  A E
Sbjct: 10  LCRTLGYEFKNIELLTQALTHRSAANKHNE---RLEFLGDSILSIVISDALYHQFPKATE 66

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    +LV  +T + +A+   L  ++ +     K       SI AD VE++I A+YL
Sbjct: 67  GDLSRMRATLVRGDTLTLIAKAFKLGDYLFLGPGELKSGGFRRESILADAVEAIIGAIYL 126

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D  +EV    +  ++ +R   ++ G  ++DAKT LQE+        P+Y+V    G  HD
Sbjct: 127 DSDLEVCRKLLLHWYAERLAEIQPGVNQKDAKTLLQEYLQGLKKPLPDYQVINIEGDAHD 186

Query: 187 PRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLK 221
             FTV   I  L+ +  G+  S+R AEQ+AAA+VL+
Sbjct: 187 QTFTVECRIDDLSESVIGVASSRRKAEQIAAAQVLE 222


>gi|262368562|ref|ZP_06061891.1| dsRNA-specific ribonuclease [Acinetobacter johnsonii SH046]
 gi|262316240|gb|EEY97278.1| dsRNA-specific ribonuclease [Acinetobacter johnsonii SH046]
          Length = 230

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/223 (36%), Positives = 121/223 (54%), Gaps = 5/223 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           S L  + L  RIGY F    LL+ ALTH S+SH Y  +YERLEFLGD +LG++I+  L+ 
Sbjct: 6   SKLSEARLASRIGYQFKQPELLQLALTHRSVSHKY--NYERLEFLGDSLLGMIIANYLYK 63

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EG L+    +LV  E   ++A +L L+  + +S+   K       SI AD VES
Sbjct: 64  AYPTENEGRLTRMRATLVRQEALGKIANDLKLSQSLILSTGELKSGGHHRESILADTVES 123

Query: 122 LIAALYLD-GGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +I A+Y+D   + V    V K+++     ++     +D K+ LQE+  A+    P Y V 
Sbjct: 124 IIGAIYVDCSDLTVLEPIVLKWYEPYLDHIEPTDQLKDPKSRLQEYLQARKKALPVYDVV 183

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              G   +  F V  ++ GL+   G   S+R AEQ AAA++LK
Sbjct: 184 DIQGDAPNQHFKVECKVDGLSVVNGEGTSRRFAEQAAAADILK 226


>gi|238897755|ref|YP_002923434.1| RNase III, ds RNA [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|259491902|sp|C4K3Z3|RNC_HAMD5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|229465512|gb|ACQ67286.1| RNase III, ds RNA [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 226

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 127/225 (56%), Gaps = 6/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+++  ++LE ++ Y+F  RSLL +ALTH S+   + +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNSININSLELKLRYSFKERSLLLQALTHRSL---HTQHNERLEFLGDSILSFVIANQLY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG +S    +LV  +T +++ARE D+ +++++     K   +   SI AD +E
Sbjct: 58  HRFPEINEGNMSRMRATLVRGDTLTEIAREFDIGAYLQLGQGELKTGGAQRESILADSIE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A++LD  I+     + +++ +R   +     ++D KT LQE+  +     P Y + 
Sbjct: 118 AIIGAIFLDSDIQTVEKTILRWYHKRLEQINPTHHQKDPKTRLQEYMQSHQLPLPFYLLA 177

Query: 179 FRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKR 222
              G  HD  FT+  ++SGL     G   ++R AEQ AA + LK+
Sbjct: 178 QVCGEAHDQEFTIHCQVSGLEELVVGKGSNRRKAEQEAAEKTLKK 222


>gi|205355648|ref|ZP_03222418.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205346425|gb|EDZ33058.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 225

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/220 (35%), Positives = 125/220 (56%), Gaps = 8/220 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE+ + Y F +++LL  ALTH S   SY  + ERLEFLGD +L L++   LF+ F    E
Sbjct: 8   LEQSLTYEFKDKNLLIHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLFHKFAKDAE 65

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    +LV+ ++ +++A  L+L  FI +S     +      SI +D +E++I A++L
Sbjct: 66  GDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDTLEAIIGAIHL 125

Query: 129 DGGIEVAGT----FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           + G E A T     ++K + Q  + +    +D KT+LQE    K G TP+Y+     GPD
Sbjct: 126 EAGFEFAKTIALRLIEKNFPQ--IDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPD 183

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           H  +F + + + G   A+ +  SK+ A+Q+AA   L++ G
Sbjct: 184 HLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 223


>gi|87311240|ref|ZP_01093362.1| ribonuclease III [Blastopirellula marina DSM 3645]
 gi|87285980|gb|EAQ77892.1| ribonuclease III [Blastopirellula marina DSM 3645]
          Length = 243

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/216 (38%), Positives = 121/216 (56%), Gaps = 3/216 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S  E RIGY F  +SLL+ ALTH+S +    ES ERLEFLGD ILG ++   LF+ F   
Sbjct: 16  SRCEVRIGYEFQEKSLLKSALTHASGASHRLESNERLEFLGDAILGRVVCEALFHSFPHF 75

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+L+   + +VS  TC++++R L L  F+ V   +     S   S+ ADV E++IAA+
Sbjct: 76  LEGDLTRIKSVVVSRLTCAKLSRVLGLEEFLIVGKGMSSSP-SVPPSLLADVFEAIIAAI 134

Query: 127 YLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLDGG + A  FV +  +       SG+   + K+ LQ++A  + G TP Y +    GPD
Sbjct: 135 YLDGGPKPAEDFVLRNLEDEIELAVSGEAGANFKSALQQYAQREHGATPNYLLLDEKGPD 194

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           H   F V  +++G+        +K+ AEQ AA   L
Sbjct: 195 HSKCFQVAAQVAGIRYVAAWGRNKKEAEQRAAQNAL 230


>gi|108563072|ref|YP_627388.1| ribonuclease III [Helicobacter pylori HPAG1]
 gi|107836845|gb|ABF84714.1| ribonuclease III [Helicobacter pylori HPAG1]
          Length = 240

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 122/221 (55%), Gaps = 8/221 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y+TLEK +GY+F ++ LLE+ALTH S   +     ERLEFLGD +LGL+I  LL++ F  
Sbjct: 19  YTTLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 76

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA   +++A+ + L  ++RVSS           SI +   E+L+A 
Sbjct: 77  YDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRVSSSEEISNGREKPSILSSAFEALMAG 136

Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +YL+ G+    ++    +++ +K+  L+      D KT LQE   A+F V P Y++    
Sbjct: 137 VYLEAGLAKVRKIMQNLLNRAYKRLDLEH--LFMDYKTALQELTQAQFCVIPTYQLLQEK 194

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           GPDH   F + + I     A     SK+ AEQ  A   L++
Sbjct: 195 GPDHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYYALQK 235


>gi|127511987|ref|YP_001093184.1| ribonuclease III [Shewanella loihica PV-4]
 gi|189043350|sp|A3QBS7|RNC_SHELP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|126637282|gb|ABO22925.1| RNAse III [Shewanella loihica PV-4]
          Length = 225

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/216 (38%), Positives = 120/216 (55%), Gaps = 5/216 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L + +GY F   +LLE+ALTH S +  + E   RLEFLGD IL ++IS  L++ F  A E
Sbjct: 10  LGRILGYQFQQIALLEQALTHRSAASKHNE---RLEFLGDSILSIVISDALYHQFPKATE 66

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    +LV  +  +++A+E  L  ++++     K       SI AD +E++I A+YL
Sbjct: 67  GDLSRMRATLVCGKMLAEIAKEFKLGDYLKLGPGELKSGGFRRESILADAMEAIIGAIYL 126

Query: 129 DGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           D  IE   T V  ++K R A+     ++D KT LQE         P Y V   SG  H  
Sbjct: 127 DADIETCRTLVLNWYKSRLAVIEPVNQKDPKTLLQEHLQGFKQPLPVYTVVNISGEAHAQ 186

Query: 188 RFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKR 222
            FTV  ++  L  A  G+  S+R AEQ+AAAEVL+R
Sbjct: 187 TFTVECKVEQLKEAVIGVANSRRKAEQIAAAEVLER 222


>gi|331082011|ref|ZP_08331139.1| ribonuclease III [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330405606|gb|EGG85136.1| ribonuclease III [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 236

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 120/222 (54%), Gaps = 5/222 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLLF 60
           ++  LEK+IGY F N  LL  ALTHSS ++    +Y+E+ ERLEFLGD +L L  S  LF
Sbjct: 6   KFLELEKKIGYEFENFDLLVNALTHSSYANEHHIAYKENNERLEFLGDAVLELTSSEFLF 65

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             +    EG+L+ +  S+V   T +  A+E+ L  ++ +             SI +D +E
Sbjct: 66  YQYADLPEGKLTKKRASIVCEPTLALCAKEISLGDYLLLGKGEEATGGRNRNSIISDAME 125

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +LI A+YLDGG   A  FV KY     +++ +   D+KT LQE   A++    +Y +   
Sbjct: 126 ALIGAIYLDGGFANAKEFVHKYI-LNDIENKQLFYDSKTTLQEIVQAQYEDDVKYVLVKE 184

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            GPDH+  F V   +      +G   +K+AAEQ AA   +K+
Sbjct: 185 EGPDHNKSFYVEALLGDKKLGEGCGHTKKAAEQQAAYCAIKK 226


>gi|297343244|pdb|3N3W|A Chain A, 2.2 Angstrom Resolution Crystal Structure Of Nuclease
           Domain Ribonuclase Iii (Rnc) From Campylobacter Jejuni
 gi|297343245|pdb|3N3W|B Chain B, 2.2 Angstrom Resolution Crystal Structure Of Nuclease
           Domain Ribonuclase Iii (Rnc) From Campylobacter Jejuni
          Length = 248

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/220 (35%), Positives = 124/220 (56%), Gaps = 8/220 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE+ + Y F +++LL  ALTH S   SY    ERLEFLGD +L L++   LF+ F    E
Sbjct: 31  LEQSLTYEFKDKNLLIHALTHKSFKKSYNN--ERLEFLGDAVLDLVVGEYLFHKFAKDAE 88

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    +LV+ ++ +++A  L+L  FI +S     +      SI +D +E++I A++L
Sbjct: 89  GDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALEAIIGAIHL 148

Query: 129 DGGIEVAGT----FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           + G E A T     ++K + Q  + +    +D KT+LQE    K G TP+Y+     GPD
Sbjct: 149 EAGFEFAKTIALRLIEKNFPQ--IDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPD 206

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           H  +F + + + G   A+ +  SK+ A+Q+AA   L++ G
Sbjct: 207 HLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 246


>gi|317010882|gb|ADU84629.1| ribonuclease III [Helicobacter pylori SouthAfrica7]
          Length = 234

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/225 (36%), Positives = 125/225 (55%), Gaps = 9/225 (4%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y TLEK +GY+F ++ LLE+ALTH S   +     ERLEFLGD +LGL+I  LL++ F  
Sbjct: 13  YITLEKALGYSFKDKHLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 70

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA+  +++A+ + L  ++RVSS           SI +   E+L+A 
Sbjct: 71  YDEGKLSKLRASIVSAQGFTKLAKVISLQDYLRVSSSEETSKGREKPSILSSAFEALMAG 130

Query: 126 LYLDGGIE----VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +YL+ G++    +    +++ +K+  L+      D KT LQE   A+F V P Y++    
Sbjct: 131 VYLEAGLDKVRKIMQNLLNRAYKRLDLEH--LSVDYKTALQELTQAQFCVIPTYQLLKEK 188

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR-EGI 225
           GP H   F + + I     A     SK+ AEQ  A + L++ +GI
Sbjct: 189 GPAHHKEFEMALYIQNQMYATAKGKSKKEAEQQCAYQALQKLKGI 233


>gi|323705471|ref|ZP_08117046.1| ribonuclease III [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535373|gb|EGB25149.1| ribonuclease III [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 232

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 120/226 (53%), Gaps = 5/226 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSS---ISHSYQESYERLEFLGDRILGLLISTLLFN 61
           RY  LEK +GY F N+ LL+ ALTHSS    S ++  S ERLEFLGD +L ++IS  L+ 
Sbjct: 6   RYENLEKNMGYTFNNKKLLKNALTHSSWANESKNFLSSNERLEFLGDSVLSIVISEYLYK 65

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +    +EG LS     +V   + ++ ARE+D+  ++ +             SI AD +E+
Sbjct: 66  NRTDLEEGYLSKYRAEIVCEPSLARCAREIDIGKYLNIGRGEEMTGGRNRDSILADAMEA 125

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           LIAA+YLD  ++     V + +++    + SG   RD KT+LQE           YK+  
Sbjct: 126 LIAAVYLDSDLKTVSEVVLRLFEKIINEVLSGLIYRDYKTKLQEVTQKMGSERVIYKLID 185

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
             GPDH+  F + V +      +G   SK+ AEQ AA E L + G+
Sbjct: 186 EYGPDHNKMFVIEVFVGENRLGRGKGRSKKEAEQYAAMEALSKMGL 231


>gi|292490849|ref|YP_003526288.1| ribonuclease III [Nitrosococcus halophilus Nc4]
 gi|291579444|gb|ADE13901.1| ribonuclease III [Nitrosococcus halophilus Nc4]
          Length = 231

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 83/213 (38%), Positives = 119/213 (55%), Gaps = 6/213 (2%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71
           ++GY F   +LL  A+TH S +   +E+ ERLEFLGD IL  LI+  L+  F  A+EG+L
Sbjct: 11  KLGYRFTEPALLRCAITHRSAA---KENNERLEFLGDSILNFLIAEFLYIRFPKAQEGKL 67

Query: 72  SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131
           S    +LV  ET +++AREL++   + +     K      TSI AD  E++I A+YLDGG
Sbjct: 68  SRLRATLVKGETLAELARELEIGDHLILGPGELKSGGYRRTSILADAFEAVIGAVYLDGG 127

Query: 132 IEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
           +E     V   ++ R  AL S    +D KT LQE+  A+    P+Y+V+   G  HD  F
Sbjct: 128 LEACRKLVASLYEDRLEALTSEVLLKDPKTRLQEYLQARQLPLPDYRVSAVRGEAHDQVF 187

Query: 190 TVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLK 221
            V   I+   P+  G   S+R AEQ AA + L+
Sbjct: 188 QVECIINDTFPSVVGTGRSRRKAEQDAATQALE 220


>gi|331084978|ref|ZP_08334065.1| ribonuclease III [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330408678|gb|EGG88143.1| ribonuclease III [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 229

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/220 (38%), Positives = 114/220 (51%), Gaps = 5/220 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLLF 60
           R   LEK+IGY F  + LL+KA+ HSS ++      Q+  ERLEFLGD +L L  S  LF
Sbjct: 3   RLKELEKKIGYTFQKKELLQKAMMHSSYTNEKHMKKQDCNERLEFLGDAVLELTTSEALF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
               S  EGEL+    S+V     + VA+EL L S++ +             SI +D VE
Sbjct: 63  FDNPSMPEGELTKTRASIVCEPALAFVAKELMLGSYLLLGKGEEATGGRQRDSITSDAVE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +LI A+YLDGG   A  F+ K+     L++ K   D+KT LQE   AKF     Y +   
Sbjct: 123 ALIGAIYLDGGFASAKEFIQKFI-LSDLENKKLFYDSKTILQEMVQAKFTENVRYVLEKE 181

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            GPDH+  FT    I       G   +K+A+EQ AA + +
Sbjct: 182 EGPDHNKSFTTSAYIGEECYGTGSGRTKKASEQEAAYQTI 221


>gi|121613213|ref|YP_001001278.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 81-176]
 gi|121504230|gb|EAQ72743.2| ribonuclease III [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 225

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/220 (35%), Positives = 124/220 (56%), Gaps = 8/220 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE+ + Y F +++LL  ALTH S   SY    ERLEFLGD +L L++   LF+ F    E
Sbjct: 8   LERSLTYEFKDKNLLIHALTHKSFKKSYNN--ERLEFLGDAVLDLVVGEYLFHKFAKDAE 65

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    +LV+ ++ +++A  L+L  FI +S     +      SI +D +E++I A++L
Sbjct: 66  GDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGKEKPSILSDALEAIIGAIHL 125

Query: 129 DGGIEVAGT----FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           + G E A T     ++K + Q  + +    +D KT+LQE    K G TP+Y+     GPD
Sbjct: 126 EAGFEFAKTIALRLIEKNFPQ--IDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPD 183

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           H  +F + + + G   A+ +  SK+ A+Q+AA   L++ G
Sbjct: 184 HLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 223


>gi|148925776|ref|ZP_01809464.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CG8486]
 gi|145845786|gb|EDK22877.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CG8486]
          Length = 229

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/220 (35%), Positives = 125/220 (56%), Gaps = 8/220 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE+ + Y F +++LL  ALTH S   SY  + ERLEFLGD +L L++   LF+ F    E
Sbjct: 12  LEQSLTYEFKDKNLLIHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLFHKFAKDAE 69

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    +LV+ ++ +++A  L+L  FI +S     +      SI +D +E++I A++L
Sbjct: 70  GDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALEAIIGAIHL 129

Query: 129 DGGIEVAGT----FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           + G E A T     ++K + Q  + +    +D KT+LQE    K G TP+Y+     GPD
Sbjct: 130 EAGFEFAKTIALRLIEKNFPQ--IDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPD 187

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           H  +F + + + G   A+ +  SK+ A+Q+AA   L++ G
Sbjct: 188 HLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 227


>gi|187918561|ref|YP_001884124.1| ribonuclease III [Borrelia hermsii DAH]
 gi|119861409|gb|AAX17204.1| ribonuclease III [Borrelia hermsii DAH]
          Length = 243

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/211 (35%), Positives = 117/211 (55%), Gaps = 7/211 (3%)

Query: 17  FANRSLLEKALTHSSISHSYQESY---ERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           F +  LL  +L+HSS ++ + + Y   ERLEFLGD +L L+I+  L+  +    EGELS 
Sbjct: 27  FNDIDLLNMSLSHSSYANEFDQKYANNERLEFLGDSVLNLIITDYLYKFYPEKSEGELSK 86

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
             + +VS E+ S +AREL+L ++I +      +       I AD +E+ + ALYLDGG  
Sbjct: 87  ARSYIVSEESLSSIARELNLGNYILLGRGEENNDGRNKKGIIADAIEAFVGALYLDGGFL 146

Query: 134 VAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
            A  FV + ++   +     G F +D K+ LQE+   K+ ++P Y++    GPDH+  F 
Sbjct: 147 KASAFVVELFEVHIRLMFNRGDF-KDYKSLLQEYVQKKYKISPNYRLAKELGPDHNKIFC 205

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           V + ++    + G   SK+ AE +AA   LK
Sbjct: 206 VELYVNDKFISNGKGKSKKEAEMIAAEMALK 236


>gi|86149260|ref|ZP_01067491.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88596211|ref|ZP_01099448.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 84-25]
 gi|218563224|ref|YP_002345004.1| ribonuclease III [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|22654076|sp|Q9PM40|RNC_CAMJE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|85840042|gb|EAQ57300.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88191052|gb|EAQ95024.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112360931|emb|CAL35732.1| ribonuclease III [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|284926829|gb|ADC29181.1| ribonuclease III [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315927617|gb|EFV06948.1| ribonuclease III [Campylobacter jejuni subsp. jejuni DFVF1099]
 gi|315928870|gb|EFV08132.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 305]
          Length = 224

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/220 (35%), Positives = 124/220 (56%), Gaps = 8/220 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE+ + Y F +++LL  ALTH S   SY    ERLEFLGD +L L++   LF+ F    E
Sbjct: 7   LEQSLTYEFKDKNLLIHALTHKSFKKSYNN--ERLEFLGDAVLDLVVGEYLFHKFAKDAE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    +LV+ ++ +++A  L+L  FI +S     +      SI +D +E++I A++L
Sbjct: 65  GDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALEAIIGAIHL 124

Query: 129 DGGIEVAGT----FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           + G E A T     ++K + Q  + +    +D KT+LQE    K G TP+Y+     GPD
Sbjct: 125 EAGFEFAKTIALRLIEKNFPQ--IDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPD 182

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           H  +F + + + G   A+ +  SK+ A+Q+AA   L++ G
Sbjct: 183 HLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 222


>gi|50085655|ref|YP_047165.1| ribonuclease III [Acinetobacter sp. ADP1]
 gi|81392620|sp|Q6F9C2|RNC_ACIAD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|49531631|emb|CAG69343.1| ribonuclease III, ds RNA [Acinetobacter sp. ADP1]
          Length = 230

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/223 (36%), Positives = 119/223 (53%), Gaps = 5/223 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           S L    L+ RIGY F    LL+ ALTH S+SH Y  +YERLEFLGD +LG++I+  L+ 
Sbjct: 6   SKLSDPRLQSRIGYEFKQLELLQLALTHRSVSHKY--NYERLEFLGDSLLGMIIANYLYQ 63

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +    EG L+    +LV  E   ++A +L L+  + +S+   K       SI AD VE+
Sbjct: 64  AYPHENEGRLTRMRATLVRQEALGKIANDLKLSRCLILSTGELKSGGHHRESILADTVEA 123

Query: 122 LIAALYLDGG-IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +I A+Y+D   + +    V K++      ++     +D K+ LQE+  A+    P Y+V 
Sbjct: 124 IIGAIYVDSNDLNLLKNIVLKWYIPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVV 183

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              G   +  F VV  + GL    G   S+R AEQ AAAE+LK
Sbjct: 184 DIQGDAPNQHFKVVCLVEGLPRVMGEGSSRRFAEQTAAAEILK 226


>gi|86152963|ref|ZP_01071168.1| ribonuclease III [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|167006173|ref|ZP_02271931.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 81-176]
 gi|85843848|gb|EAQ61058.1| ribonuclease III [Campylobacter jejuni subsp. jejuni HB93-13]
          Length = 224

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/220 (35%), Positives = 124/220 (56%), Gaps = 8/220 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE+ + Y F +++LL  ALTH S   SY    ERLEFLGD +L L++   LF+ F    E
Sbjct: 7   LERSLTYEFKDKNLLIHALTHKSFKKSYNN--ERLEFLGDAVLDLVVGEYLFHKFAKDAE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    +LV+ ++ +++A  L+L  FI +S     +      SI +D +E++I A++L
Sbjct: 65  GDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGKEKPSILSDALEAIIGAIHL 124

Query: 129 DGGIEVAGT----FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           + G E A T     ++K + Q  + +    +D KT+LQE    K G TP+Y+     GPD
Sbjct: 125 EAGFEFAKTIALRLIEKNFPQ--IDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPD 182

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           H  +F + + + G   A+ +  SK+ A+Q+AA   L++ G
Sbjct: 183 HLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 222


>gi|149194957|ref|ZP_01872050.1| ribonuclease III [Caminibacter mediatlanticus TB-2]
 gi|149134878|gb|EDM23361.1| ribonuclease III [Caminibacter mediatlanticus TB-2]
          Length = 227

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/220 (36%), Positives = 120/220 (54%), Gaps = 7/220 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L+K +GY F +  L+ +ALTH S S  +    ERLE+LGD +L L++   L+N F  A+E
Sbjct: 6   LQKSLGYQFKDEKLITEALTHRSYSKEFNN--ERLEYLGDAVLDLIVGEYLYNLFPKAEE 63

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G LS    +LV+ E+  ++A+ L+L  ++ +S     +      SI +   E+LI ALYL
Sbjct: 64  GILSKLRAALVNEESFDKLAKRLNLGKYLFLSPAEENNKGREKPSILSSAFEALIGALYL 123

Query: 129 DGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           + G + A     K  K+   K    +  +D KT LQE   A FGV PEY++   +GPDH 
Sbjct: 124 EAGFDKAKEIALKLLKEEYPKITPEELLKDYKTTLQEITQAHFGVVPEYRLLSATGPDHK 183

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAA---AEVLKRE 223
             F + V I+    A+    SK+AA+Q  A    E LK+E
Sbjct: 184 KEFEIGVFINDREYARAKGRSKKAAQQEGARLTIEKLKKE 223


>gi|15611674|ref|NP_223325.1| ribonuclease III [Helicobacter pylori J99]
 gi|7531198|sp|Q9ZLH2|RNC_HELPJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|4155159|gb|AAD06188.1| RIBONUCLEASE III [Helicobacter pylori J99]
          Length = 239

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 122/221 (55%), Gaps = 8/221 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y TLEK +GY+F ++ LLE+ALTH S   +     ERLEFLGD +LGL+I  LL++ F  
Sbjct: 18  YLTLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 75

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA   +++A+ + L  ++RVSS           SI +   E+L+A 
Sbjct: 76  YDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRVSSSEEISKGREKPSILSSAFEALMAG 135

Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +YL+ G+    ++    +++ +K+  L+      D KT LQE   A+F V P Y++    
Sbjct: 136 VYLEAGLAKVRKIIQNLLNRAYKRLDLEH--LFMDYKTALQELTQAQFCVIPTYQLLQEK 193

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           GPDH   F + + I     A     SK+ AEQ  A + L++
Sbjct: 194 GPDHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQALQK 234


>gi|260588638|ref|ZP_05854551.1| ribonuclease III [Blautia hansenii DSM 20583]
 gi|260541113|gb|EEX21682.1| ribonuclease III [Blautia hansenii DSM 20583]
          Length = 263

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 120/222 (54%), Gaps = 5/222 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLLF 60
           ++  LEK+IGY F N  LL  ALTHSS ++    +Y+E+ ERLEFLGD +L L  S  LF
Sbjct: 33  KFLELEKKIGYEFENFDLLVNALTHSSYANEHHIAYKENNERLEFLGDAVLELTSSEFLF 92

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             +    EG+L+ +  S+V   T +  A+E+ L  ++ +             SI +D +E
Sbjct: 93  YQYADLPEGKLTKKRASIVCEPTLALCAKEISLGDYLLLGKGEEATGGRNRNSIISDAME 152

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +LI A+YLDGG   A  FV KY     +++ +   D+KT LQE   A++    +Y +   
Sbjct: 153 ALIGAIYLDGGFANAKEFVHKYI-LNDIENKQLFYDSKTTLQEIVQAQYEDDVKYVLVKE 211

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            GPDH+  F V   +      +G   +K+AAEQ AA   +K+
Sbjct: 212 EGPDHNKSFYVEALLGDKKLGEGCGHTKKAAEQQAAYCAIKK 253


>gi|308182848|ref|YP_003926975.1| ribonuclease III [Helicobacter pylori PeCan4]
 gi|308065033|gb|ADO06925.1| ribonuclease III [Helicobacter pylori PeCan4]
          Length = 239

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 123/221 (55%), Gaps = 8/221 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y TLEK +GY+F ++ LLE+ALTH S   +     ERLEFLGD +LGL+I  LL++ F  
Sbjct: 18  YLTLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 75

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA+  +++A+ + L  ++RVSS           SI +   E+L+A 
Sbjct: 76  YDEGKLSKLRASIVSAQGFTKLAKAIALQDYLRVSSSEEISNGREKPSILSSAFEALMAG 135

Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +YL+ G+    ++    +++ +K+  L+      D KT LQE   A+F V P Y++    
Sbjct: 136 VYLEAGLAKVRKIIQNLLNRAYKRLDLEH--LFMDYKTALQELTQAQFCVIPIYQLLKEK 193

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           GPDH   F + + I     A     SK+ AEQ  A + L++
Sbjct: 194 GPDHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQALQK 234


>gi|308187806|ref|YP_003931937.1| RNase III, ds RNA [Pantoea vagans C9-1]
 gi|308058316|gb|ADO10488.1| RNase III, ds RNA [Pantoea vagans C9-1]
          Length = 226

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/228 (35%), Positives = 125/228 (54%), Gaps = 6/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F +  LL++ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 1   MNPILINKLQRKLGYTFTHSELLQQALTHRSASSKHNE---RLEFLGDSILSYVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  IE     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGIFLDSSIERVEQLILDWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKREGI 225
              G  HD  FT+  ++SG+A P  G+  S+R AEQ AA + L + G+
Sbjct: 178 QVRGEAHDQEFTIHCQVSGMAEPVVGVGSSRRKAEQAAAEQALIKLGL 225


>gi|110801795|ref|YP_699005.1| ribonuclease III [Clostridium perfringens SM101]
 gi|110682296|gb|ABG85666.1| ribonuclease III [Clostridium perfringens SM101]
          Length = 241

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/221 (38%), Positives = 123/221 (55%), Gaps = 6/221 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLFNHFDSA 66
           +EK IG  F N+ +L  ALTHSS ++ +++    ERLEFLGD +L L ++  LFN++   
Sbjct: 13  VEKLIGIEFENKGVLITALTHSSYANQFKDVKYNERLEFLGDSVLQLCVTKYLFNNYKDK 72

Query: 67  KEGELSVRFNSLVSAE-TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
            EGEL+ +  +LV  E +  +V++ L L  +IR+S           TSIQAD +E++IAA
Sbjct: 73  SEGELT-KIRALVVCENSLHKVSKNLSLGKYIRMSKGEELTGGRERTSIQADALEAVIAA 131

Query: 126 LYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YLD GIEVA  F+ + +K    K  + +   D KT LQE       V   Y +    GP
Sbjct: 132 VYLDKGIEVANDFILRNFKDVIDKAINEEIILDFKTRLQEVLQKNGEVNIVYNLVKHEGP 191

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            H  +F   + I+     QG+  SK+ +EQ AA   L+R G
Sbjct: 192 PHRRKFFTDLLINNEVMGQGVGFSKKESEQNAAKAALQRLG 232


>gi|90407379|ref|ZP_01215564.1| ribonuclease III [Psychromonas sp. CNPT3]
 gi|90311530|gb|EAS39630.1| ribonuclease III [Psychromonas sp. CNPT3]
          Length = 231

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 118/222 (53%), Gaps = 5/222 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M       LE+RIGY F N +LL++ALTH S   ++ E   RLEFLGD IL  +IST L+
Sbjct: 5   MKETELKRLERRIGYKFNNFALLKQALTHRSALGAHNE---RLEFLGDSILSFVISTDLY 61

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG+LS    +LV  +  +++ RE +L   + +     K       SI AD VE
Sbjct: 62  LRFPKVNEGDLSRMRATLVCGKMLAEIGREFELGDSLILGPGELKSGGFRRDSIIADGVE 121

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           S+I A++LD  I      V  ++  R   ++ G  ++D KT LQE   ++    P Y+V 
Sbjct: 122 SIIGAVFLDSDINSVDRLVLAWFNSRLTTIEPGIGQKDPKTRLQEHLQSRKQGLPLYEVL 181

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
              G  H+ RFT+   I G+   QG   S+R AEQ+AA ++L
Sbjct: 182 EIRGEAHNQRFTMSCIIDGIEAVQGQGTSRRKAEQIAAEKML 223


>gi|210134869|ref|YP_002301308.1| ribonuclease III [Helicobacter pylori P12]
 gi|226741371|sp|B6JLQ0|RNC_HELP2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|210132837|gb|ACJ07828.1| ribonuclease III [Helicobacter pylori P12]
          Length = 239

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 122/221 (55%), Gaps = 8/221 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y TLEK +GY+F ++ LLE+ALTH S   +     ERLEFLGD +LGL+I  LL++ F  
Sbjct: 18  YLTLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 75

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA   +++A+ + L  ++RVSS           SI +   E+L+A 
Sbjct: 76  YDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRVSSSEEISNGREKPSILSSAFEALMAG 135

Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +YL+ G+    ++    +++ +K+  L+      D KT LQE   A+F V P Y++    
Sbjct: 136 VYLEAGLAKVRKIIQNLLNRAYKRLDLEH--LFMDYKTALQELTQAQFCVIPTYQLLQEK 193

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           GPDH   F + + I     A     SK+ AEQ  A + L++
Sbjct: 194 GPDHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQALQK 234


>gi|317012480|gb|ADU83088.1| ribonuclease III [Helicobacter pylori Lithuania75]
          Length = 239

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 122/221 (55%), Gaps = 8/221 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y TLEK +GY+F ++ LLE+ALTH S   +     ERLEFLGD +LGL+I  LL++ F  
Sbjct: 18  YLTLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 75

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA   +++A+ + L  ++R+SS           SI +   E+L+A 
Sbjct: 76  YDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRISSSEEISNGREKPSILSSAFEALMAG 135

Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +YL+ G+    ++    +++ +K+  L+      D KT LQE   A+F V P Y++    
Sbjct: 136 VYLEAGLAKVRKIMQNLLNRAYKRLDLEH--LFMDYKTALQELTQAQFCVIPTYQLLQEK 193

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           GPDH   F + + I     A     SK+ AEQ  A + L++
Sbjct: 194 GPDHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQALQK 234


>gi|226328142|ref|ZP_03803660.1| hypothetical protein PROPEN_02033 [Proteus penneri ATCC 35198]
 gi|225203846|gb|EEG86200.1| hypothetical protein PROPEN_02033 [Proteus penneri ATCC 35198]
          Length = 227

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 76/213 (35%), Positives = 115/213 (53%), Gaps = 7/213 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ L  + L+K++GY F    LL +ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 1   MNTLLVNQLQKKLGYTFTQNELLLQALTHRSASSKHNE---RLEFLGDSILSYVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIE-VAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           +LI A++LD  I+ +    +  +++ R   +  G  ++D KT LQE+   +    P Y V
Sbjct: 118 ALIGAIFLDSDIQNIEKKIILNWYENRLAEISPGDKQKDPKTRLQEYLQGRHLPLPSYNV 177

Query: 178 TFRSGPDHDPRFTVVVEISGL-APAQGMDCSKR 209
               G  HD  FT+  +ISG+  P +GM  S+R
Sbjct: 178 VQVRGEAHDQEFTIHCQISGIEQPVKGMGTSRR 210


>gi|251772101|gb|EES52671.1| Ribonuclease III [Leptospirillum ferrodiazotrophum]
          Length = 254

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 122/221 (55%), Gaps = 7/221 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES-----YERLEFLGDRILGLLISTLLFNHF 63
           LE+R+GY F++   LE+A  H S ++  ++       ERLEFLGD +LGL+++  L   +
Sbjct: 14  LEERLGYRFSSLERLEEATIHKSFTNETKKGGVRRDNERLEFLGDTVLGLVVAEYLMRLW 73

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             + EG LS     +VS  + +Q+AR + L  ++ +             SI +D +E++I
Sbjct: 74  PDSPEGVLSKLKGRIVSEPSLAQIARNIGLGRYLLIGRGEEMTQGREKNSILSDALEAVI 133

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+Y DGG++ A  F+ + +++   ++  G+   D KT+LQE+   +    P+Y +T +S
Sbjct: 134 AAIYQDGGLDAARQFILREFRELFESVSRGESVADYKTQLQEYCQRELETLPQYVITGQS 193

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           GPDH   F V V I      +G   SK+ AEQ AA   L+R
Sbjct: 194 GPDHQKVFEVAVRIRDKNWGEGQGHSKKEAEQKAAKSALER 234


>gi|27904735|ref|NP_777861.1| ribonuclease III [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|29427422|sp|P59476|RNC_BUCBP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|27904132|gb|AAO26966.1| ribonuclease III [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 226

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 78/220 (35%), Positives = 119/220 (54%), Gaps = 6/220 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L+K +GY F  + LL +ALTH S +  + E   RLEFLGD IL  +I+  L++ F    E
Sbjct: 9   LQKILGYTFIKKDLLIQALTHRSANSKHNE---RLEFLGDSILSFVIANALYHCFPHVNE 65

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G++S    +LV   T +++A E DL  ++++     K       SI A+ VE+LI +++L
Sbjct: 66  GDMSRMRATLVRGHTLAKIAYEFDLGDYLQLGQGELKSGGFRRESILANTVEALIGSIFL 125

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D  ++     + K++K R  A+     ++D KT LQE+  +K    P Y V    G  H+
Sbjct: 126 DSNLKTIEKLILKWYKNRLKAINPSDTQKDPKTRLQEYLQSKHLPLPSYLVEQVYGEAHN 185

Query: 187 PRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKREGI 225
             FT+  EISG+     G+  S+R AEQ AA   L + GI
Sbjct: 186 QLFTIYCEISGINEKTIGIGSSRRKAEQEAAQNALIKLGI 225


>gi|15616869|ref|NP_240082.1| ribonuclease III [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
 gi|219681624|ref|YP_002468010.1| ribonuclease III [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|219682181|ref|YP_002468565.1| ribonuclease III [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
 gi|257471312|ref|ZP_05635311.1| ribonuclease III [Buchnera aphidicola str. LSR1 (Acyrthosiphon
           pisum)]
 gi|11134313|sp|P57346|RNC_BUCAI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807240|sp|B8D951|RNC_BUCA5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807241|sp|B8D7F5|RNC_BUCAT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|25289216|pir||H84959 ribonuclease III (EC 3.1.26.3) [imported] - Buchnera sp.  (strain
           APS)
 gi|10038933|dbj|BAB12968.1| ribonuclease III [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
 gi|219621914|gb|ACL30070.1| ribonuclease III [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
 gi|219624467|gb|ACL30622.1| ribonuclease III [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|311085996|gb|ADP66078.1| ribonuclease III [Buchnera aphidicola str. LL01 (Acyrthosiphon
           pisum)]
 gi|311086571|gb|ADP66652.1| ribonuclease III [Buchnera aphidicola str. TLW03 (Acyrthosiphon
           pisum)]
 gi|311087152|gb|ADP67232.1| ribonuclease III [Buchnera aphidicola str. JF99 (Acyrthosiphon
           pisum)]
 gi|311087686|gb|ADP67765.1| ribonuclease III [Buchnera aphidicola str. JF98 (Acyrthosiphon
           pisum)]
          Length = 226

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 125/228 (54%), Gaps = 6/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +    ++K +GY F ++ LL++ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 1   MNHIVTKKIQKVLGYTFTHKDLLKQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            HF    EG++S    +LV   T +++A E DL  ++++     K       SI A+ VE
Sbjct: 58  QHFPYIDEGDMSRMRATLVRGNTLAEIAYEFDLGEYLKLGQGELKSGGFRRESILANTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI ++YLD  I+     + K++++R   +  G  ++D KT LQE+  +K    P Y + 
Sbjct: 118 ALIGSIYLDSNIKTVEELILKWYEKRLEKISPGDTQKDPKTRLQEYLQSKHLSLPLYFIV 177

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKREGI 225
              G  H+  FT+  +IS ++    G   S+R AEQ AA + L + G+
Sbjct: 178 EVYGEAHNQLFTIHCKISTISEYLIGTGSSRRKAEQDAAQKALIKLGV 225


>gi|317014083|gb|ADU81519.1| ribonuclease III [Helicobacter pylori Gambia94/24]
          Length = 239

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 81/220 (36%), Positives = 117/220 (53%), Gaps = 6/220 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y TLEK +GY+F ++ LLE+ALTH S   +     ERLEFLGD +LGL+I  LL++ F  
Sbjct: 18  YLTLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 75

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA   +++A+ + L  ++R+SS           SI +   E+L+A 
Sbjct: 76  YDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRISSSEEISKGREKPSILSSAFEALMAG 135

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +YL+ G+      + K    RA K         D KT LQE   A+F V P Y++    G
Sbjct: 136 VYLEAGLAKVRKIIQKLL-NRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLQEKG 194

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           PDH   F + + I     A     SK+ AEQ  A + L++
Sbjct: 195 PDHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQALQK 234


>gi|259907677|ref|YP_002648033.1| ribonuclease III [Erwinia pyrifoliae Ep1/96]
 gi|224963299|emb|CAX54784.1| Ribonuclease III [Erwinia pyrifoliae Ep1/96]
 gi|283477528|emb|CAY73444.1| RNase III, ds RNA [Erwinia pyrifoliae DSM 12163]
 gi|310764815|gb|ADP09765.1| ribonuclease III [Erwinia sp. Ejp617]
          Length = 226

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 81/228 (35%), Positives = 123/228 (53%), Gaps = 6/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINKLQRKLGYTFTHQELLQQALTHRSASSKHNE---RLEFLGDSILSYVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  QRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  ++  R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSDIQTVEQLILSWYASRLDQISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKREGI 225
              G  HD  FT+  ++SG+A P  G   S+R AEQ AA + L + GI
Sbjct: 178 QVRGEAHDQEFTIHCQVSGMADPVVGTGSSRRKAEQAAAEQALTKLGI 225


>gi|317177479|dbj|BAJ55268.1| ribonuclease III [Helicobacter pylori F16]
          Length = 239

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 122/221 (55%), Gaps = 8/221 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y TLEK +GY+F ++ LLE+ALTH S   +     ERLEFLGD +LGL+I  LL++ F  
Sbjct: 18  YITLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 75

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA   +++A+ + L  ++RVSS           SI +   E+L+A 
Sbjct: 76  YDEGKLSKLRASIVSAHGFTKLAKVIALQDYLRVSSSEEISKGREKPSILSSAFEALMAG 135

Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +YL+ G+    ++    +++ +K+  L+      D KT LQE   A+F V P Y++    
Sbjct: 136 VYLEAGLAKVRKITQNLLNRAYKRLDLEH--LFMDYKTALQELTQAQFCVIPTYQLLKEK 193

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           GPDH   F + + I     A     SK+ AEQ  A + L++
Sbjct: 194 GPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQK 234


>gi|260775208|ref|ZP_05884106.1| ribonuclease III [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608909|gb|EEX35071.1| ribonuclease III [Vibrio coralliilyticus ATCC BAA-450]
          Length = 225

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/206 (36%), Positives = 116/206 (56%), Gaps = 6/206 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + LEK++GY F +  L+  ALTH S   ++ +  ERLEFLGD IL  +I+  L++ F   
Sbjct: 6   AKLEKKLGYQFNDAELINLALTHRS---AHGKHNERLEFLGDSILSFVIADDLYHRFPKV 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG++S    +LV   T +++ RE +L   +++     K       SI AD VE++I A+
Sbjct: 63  NEGDMSRMRATLVRGNTLAELGREFELGDHLKLGPGELKSGGFRRDSILADAVEAIIGAI 122

Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD  IEV    +  ++KQR  A++ G  ++D KT LQE+   +    P Y VT   G  
Sbjct: 123 YLDSDIEVVRGIILSWYKQRLEAIQPGVSQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 182

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKR 209
           H+ +FTV  E++G+ +P  G   S+R
Sbjct: 183 HNQQFTVSCEVAGVGSPVIGKGTSRR 208


>gi|332673509|gb|AEE70326.1| ribonuclease III [Helicobacter pylori 83]
          Length = 239

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 122/221 (55%), Gaps = 8/221 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y TLEK +GY+F ++ LLE+ALTH S   +     ERLEFLGD +LGL+I  LL++ F  
Sbjct: 18  YITLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 75

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA   +++A+ + L  ++RVSS           SI +   E+L+A 
Sbjct: 76  YDEGKLSKLRASIVSAHGFTKLAKVIALQDYLRVSSSEEISKGREKPSILSSAFEALMAG 135

Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +YL+ G+    ++    +++ +K+  L+      D KT LQE   A+F V P Y++    
Sbjct: 136 VYLEAGLAKVRKITQNLLNRAYKRLDLEH--LFMDYKTALQELTQAQFCVIPTYQLLKEK 193

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           GPDH   F + + I     A     SK+ AEQ  A + L++
Sbjct: 194 GPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQK 234


>gi|126173439|ref|YP_001049588.1| ribonuclease III [Shewanella baltica OS155]
 gi|160874397|ref|YP_001553713.1| ribonuclease III [Shewanella baltica OS195]
 gi|217974269|ref|YP_002359020.1| ribonuclease III [Shewanella baltica OS223]
 gi|304409362|ref|ZP_07390982.1| ribonuclease III [Shewanella baltica OS183]
 gi|307303720|ref|ZP_07583473.1| ribonuclease III [Shewanella baltica BA175]
 gi|189043346|sp|A3D1V6|RNC_SHEB5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043348|sp|A9L5N6|RNC_SHEB9 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807898|sp|B8EBQ2|RNC_SHEB2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|125996644|gb|ABN60719.1| RNAse III [Shewanella baltica OS155]
 gi|160859919|gb|ABX48453.1| Ribonuclease III [Shewanella baltica OS195]
 gi|217499404|gb|ACK47597.1| Ribonuclease III [Shewanella baltica OS223]
 gi|304351880|gb|EFM16278.1| ribonuclease III [Shewanella baltica OS183]
 gi|306912618|gb|EFN43041.1| ribonuclease III [Shewanella baltica BA175]
 gi|315266632|gb|ADT93485.1| ribonuclease III [Shewanella baltica OS678]
          Length = 226

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 82/216 (37%), Positives = 122/216 (56%), Gaps = 6/216 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L + + Y F N  LL +ALTH S ++ + E   RLEFLGD IL ++IS  L++ F  A E
Sbjct: 10  LCRTLSYEFKNIELLTQALTHRSAANKHNE---RLEFLGDSILSIVISDALYHQFPKATE 66

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    +LV  +T + +A+E  L  ++ +     K       SI AD VE++I A+YL
Sbjct: 67  GDLSRMRATLVRGDTLTIIAQEFKLGDYLYLGPGELKSGGFRRESILADAVEAIIGAVYL 126

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D  +EV    + K++ +R   ++ G  ++DAKT LQE         P+Y+V    G  HD
Sbjct: 127 DSDLEVCRALLLKWYAERLAEIQPGISQKDAKTLLQEHLQGFKKPLPDYQVINIEGDAHD 186

Query: 187 PRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLK 221
             FTV   I  L+ +  G+  S+R AEQ+AAA+VL+
Sbjct: 187 QTFTVECRIEDLSQSVIGVASSRRKAEQIAAAQVLE 222


>gi|145635204|ref|ZP_01790908.1| ribonuclease III [Haemophilus influenzae PittAA]
 gi|229845360|ref|ZP_04465491.1| ribonuclease III [Haemophilus influenzae 6P18H1]
 gi|145267483|gb|EDK07483.1| ribonuclease III [Haemophilus influenzae PittAA]
 gi|229811668|gb|EEP47366.1| ribonuclease III [Haemophilus influenzae 6P18H1]
          Length = 227

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/223 (38%), Positives = 122/223 (54%), Gaps = 17/223 (7%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE++IGY F N +LL++ALTH S +  + E   RLEFLGD IL   I+  L++ F    E
Sbjct: 7   LERKIGYCFNNIALLKQALTHRSAATQHNE---RLEFLGDSILNFTIAEALYHQFPRCNE 63

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELS    +LV   T + +AR+ +L  ++ + S   K+      SI AD VE++I A+ L
Sbjct: 64  GELSRMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVEAIIGAMSL 123

Query: 129 DGGIEVAGTFVDKYWKQRAL---KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           D G+ V  T V + W Q+ L   K G  ++DAKT LQE+   K    P Y+V    G  H
Sbjct: 124 DQGLAVT-TQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPLPTYEVVNIQGEAH 182

Query: 186 DPRFTVVVEISGLAPAQGMD-------CSKRAAEQVAAAEVLK 221
              FTV  ++     A+ +D        S+R AEQ AA ++LK
Sbjct: 183 CQIFTVKCKVKS---AEKIDRTFVAKGSSRRKAEQAAAEQILK 222


>gi|157415855|ref|YP_001483111.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 81116]
 gi|283957021|ref|ZP_06374493.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1336]
 gi|189043300|sp|A8FNU7|RNC_CAMJ8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|157386819|gb|ABV53134.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 81116]
 gi|283791522|gb|EFC30319.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1336]
 gi|307748491|gb|ADN91761.1| Ribonuclease 3 [Campylobacter jejuni subsp. jejuni M1]
 gi|315931680|gb|EFV10641.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 327]
          Length = 224

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 77/220 (35%), Positives = 124/220 (56%), Gaps = 8/220 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE+ + Y F +++LL  ALTH S   SY    ERLEFLGD +L L++   LF+ F    E
Sbjct: 7   LEQSLTYEFKDKNLLIHALTHKSFKKSYNN--ERLEFLGDAVLDLVVGEYLFHKFAKDAE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    +LV+ ++ +++A  L+L  FI +S     +      SI +D +E++I A++L
Sbjct: 65  GDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGKEKPSILSDALEAIIGAIHL 124

Query: 129 DGGIEVAGT----FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           + G E A T     ++K + Q  + +    +D KT+LQE    K G TP+Y+     GPD
Sbjct: 125 EAGFEFAKTIALRLIEKNFPQ--IDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPD 182

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           H  +F + + + G   A+ +  SK+ A+Q+AA   L++ G
Sbjct: 183 HLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 222


>gi|288575033|ref|ZP_06393390.1| ribonuclease III [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570774|gb|EFC92331.1| ribonuclease III [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 244

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 82/223 (36%), Positives = 121/223 (54%), Gaps = 10/223 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFD 64
           S ++ R+GY+F +  LL +ALTHSS +H    +   ERLEFLGD +L L  ST LF    
Sbjct: 11  SLIQDRLGYSFTDIELLREALTHSSYAHESGLRSWNERLEFLGDAVLELATSTRLFRAMK 70

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK--DVCSFMTSIQADVVESL 122
              EG L+     LV  E     A  L L+  +RV+  LRK  + C  ++S+ AD +E++
Sbjct: 71  DMDEGGLTRLRARLVRKEALLTWAEALGLSGILRVNRGLRKKGEGCD-LSSMHADAIEAI 129

Query: 123 IAALYLDGGIEVAGTFVDKYW-----KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
             A+Y+DGG ++A + V++Y      K   ++ G    D K+ELQ+    K    PEY++
Sbjct: 130 FGAVYMDGGYDMAESVVNRYLDFLFEKGDYIQDGNSSIDPKSELQQILQIKGEPLPEYRI 189

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             R GP H P F V + +SG+  + G   S + AE  AA + L
Sbjct: 190 MSREGPPHSPSFEVELYVSGVLLSSGRGRSIKEAEVQAALDGL 232


>gi|302036171|ref|YP_003796493.1| ribonuclease III [Candidatus Nitrospira defluvii]
 gi|300604235|emb|CBK40567.1| Ribonuclease III [Candidatus Nitrospira defluvii]
          Length = 234

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 117/221 (52%), Gaps = 9/221 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           +++ +GY F    LLE+ALTH S S+  +       ERLEFLGD +L L++S  L   F 
Sbjct: 10  VQRLLGYRFHQPRLLEEALTHKSYSNERRSRDRTQNERLEFLGDAVLSLVMSEYLAAEFP 69

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            + EG LS     LVS  + ++ AR + L   +R+             S+ AD +E+LIA
Sbjct: 70  GSNEGGLSKLKAHLVSEASLAKAARRMKLGRLLRLGKGEELSKGREKHSLLADALEALIA 129

Query: 125 ALYLDGGIEVAGTFV-----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           A+YLDGG+E +  F      ++    RA ++     D KT+LQE    ++   P+Y+   
Sbjct: 130 AIYLDGGLEASRKFTLQVLEEELLATRAEQARPGMEDYKTQLQEVCQKRYESLPQYETVR 189

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            SGPDH+  F V + I G+    G   SK+ AEQ+AA E L
Sbjct: 190 ESGPDHEKVFEVELTIQGVMRGIGRGRSKKEAEQMAAKEAL 230


>gi|110798679|ref|YP_696405.1| ribonuclease III [Clostridium perfringens ATCC 13124]
 gi|110673326|gb|ABG82313.1| ribonuclease III [Clostridium perfringens ATCC 13124]
          Length = 241

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 84/221 (38%), Positives = 123/221 (55%), Gaps = 6/221 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLFNHFDSA 66
           +EK IG  F N+ +L  ALTHSS ++ +++    ERLEFLGD +L L ++  LFN++   
Sbjct: 13  VEKLIGIEFENKGVLITALTHSSYANQFKDVKYNERLEFLGDSVLQLCVTKYLFNNYKDK 72

Query: 67  KEGELSVRFNSLVSAE-TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
            EGEL+ +  +LV  E +  +V++ L L  +IR+S           TSIQAD +E++IAA
Sbjct: 73  SEGELT-KIRALVVCENSLHKVSKNLSLGKYIRMSKGEELTGGRERTSIQADALEAVIAA 131

Query: 126 LYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YLD GIEVA  F+ + +K    K  + +   D KT LQE       V   Y +    GP
Sbjct: 132 VYLDKGIEVANDFILRNFKDVIDKAINEEIILDFKTRLQEVLQKNGEVNIVYNLVKHEGP 191

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            H  +F   + I+     QG+  SK+ +EQ AA   L+R G
Sbjct: 192 PHRRKFFTDLLINNEIMGQGVGFSKKESEQNAAKAALQRLG 232


>gi|296273889|ref|YP_003656520.1| ribonuclease III [Arcobacter nitrofigilis DSM 7299]
 gi|296098063|gb|ADG94013.1| ribonuclease III [Arcobacter nitrofigilis DSM 7299]
          Length = 223

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 116/221 (52%), Gaps = 8/221 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y  LEK + Y F N+ L+ +ALTH S    Y    ERLEFLGD +L L++   L+  F  
Sbjct: 4   YVNLEKCLDYQFKNKDLIVEALTHKSFKKPYNN--ERLEFLGDAVLNLIVGEYLYKKFPQ 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           + EG+LS    SLV+    +++A E+ L  +I +S    ++      SI +D  ES++ A
Sbjct: 62  SNEGDLSKIRASLVNETGFTKLANEIKLGDYIYLSIAEERNKGRTKASILSDAFESIMGA 121

Query: 126 LYLDGGIE----VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +YL+ G+E    +  T ++K + +  L       D KT LQE   A+FG  P+YK+    
Sbjct: 122 IYLESGLETLKPIILTLLEKSYDKINLDV--LFSDYKTALQEITQAEFGSIPDYKIEGSY 179

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           GPDH   F V + I+     Q +  SK+ A+Q  A   L +
Sbjct: 180 GPDHKKEFEVSIWINNQCYGQAIGKSKKLAQQAVAKIALDK 220


>gi|167758292|ref|ZP_02430419.1| hypothetical protein CLOSCI_00630 [Clostridium scindens ATCC 35704]
 gi|167664189|gb|EDS08319.1| hypothetical protein CLOSCI_00630 [Clostridium scindens ATCC 35704]
          Length = 235

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 82/212 (38%), Positives = 112/212 (52%), Gaps = 5/212 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
           LEK+IGY F +  LL+KA+ HSS ++       E  ERLEFLGD +L L+ S  LF   +
Sbjct: 12  LEKKIGYTFKDLQLLKKAMLHSSYANEKHLPKYECNERLEFLGDAVLELVSSEFLFYEHE 71

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGEL+    S+V     +  AREL L  ++ +             SI +D +E+LI 
Sbjct: 72  KMPEGELTKTRASMVCEPALAFCARELSLGEYLLLGKGEEATGGRKRESITSDAMEALIG 131

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A+Y+DGG   A  F+ ++  Q  L+  K   D+KT LQE   A F  T  Y++    GPD
Sbjct: 132 AIYIDGGFASAKEFIHRFILQD-LEDKKLFFDSKTILQEIVQANFKETISYRLVREEGPD 190

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           HD  F V+V I       G   +K+AAEQ AA
Sbjct: 191 HDKSFHVMVYIGEEEYGLGKGRTKKAAEQEAA 222


>gi|325677853|ref|ZP_08157495.1| ribonuclease III [Ruminococcus albus 8]
 gi|324110407|gb|EGC04581.1| ribonuclease III [Ruminococcus albus 8]
          Length = 232

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 122/224 (54%), Gaps = 6/224 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHF 63
           +  +KRIGY+F N  LL +AL+HSS ++  ++   S ERLEFLGD +L +++S  +F HF
Sbjct: 8   AEFQKRIGYSFKNDRLLYEALSHSSFANENKKQRHSNERLEFLGDSVLSIVVSDYIFEHF 67

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EGEL+    SLV  +   + + + +L  +I +             SI +D +E++I
Sbjct: 68  KHLPEGELTKLRASLVCEKALFEFSHKFELGKYIFLGKGEELTGGRERASIVSDAMEAVI 127

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+YLDGG+E A   +  +  +      +  F  D KT LQE          EY +    
Sbjct: 128 AAIYLDGGLEAARKHIMGFLPKDINPAHTETF-HDYKTVLQEVIQRNPEEKIEYFLKGEE 186

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           GPDHD RFTV V+++     +G+  SK++AEQ AA E L   GI
Sbjct: 187 GPDHDKRFTVQVKLNSNVIGEGVGRSKKSAEQNAAKEALDLMGI 230


>gi|307244287|ref|ZP_07526402.1| ribonuclease III [Peptostreptococcus stomatis DSM 17678]
 gi|306492437|gb|EFM64475.1| ribonuclease III [Peptostreptococcus stomatis DSM 17678]
          Length = 235

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 81/220 (36%), Positives = 123/220 (55%), Gaps = 5/220 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE-SY-ERLEFLGDRILGLLISTLLFNHFDSA 66
            E++IGY F N++ ++ ALTHSS ++ ++E +Y ERLEFLGD +LGL++S  LF   +  
Sbjct: 15  FEEKIGYEFKNKTYIQTALTHSSFANEHKEFNYNERLEFLGDSVLGLVVSDYLFRARNDL 74

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+L+    ++V  E+ S VAR+++L   + +    +    S   SI AD  E++IAA+
Sbjct: 75  PEGKLTRLRANVVCEESLSAVARKINLGDHLFLGKGEKTSGGSDRDSILADATEAVIAAI 134

Query: 127 YLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLDGG + A  F+    +    K+  G   RD KT LQE      G    YK+   SGPD
Sbjct: 135 YLDGGFDQAKDFILSNLRDTIAKNIDGNIFRDYKTILQEIIQGNNGKIS-YKLVGESGPD 193

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           H+  F + V+        G   +K+ AE+ AA + L + G
Sbjct: 194 HNKEFEMQVKCGQDTIGIGKGKNKKEAEKEAARDALVKMG 233


>gi|315586658|gb|ADU41039.1| ribonuclease III [Helicobacter pylori 35A]
          Length = 238

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 122/221 (55%), Gaps = 8/221 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y TLEK +GY+F ++ LLE+ALTH S   +     ERLEFLGD +LGL+I  LL++ F  
Sbjct: 17  YITLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 74

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA   +++A+ + L  ++RVSS           SI +   E+L+A 
Sbjct: 75  YDEGKLSKLRASIVSAHGFTKLAKVIALQDYLRVSSSEEISKGREKPSILSSAFEALMAG 134

Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +YL+ G+    ++    +++ +K+  L+      D KT LQE   A+F V P Y++    
Sbjct: 135 VYLEAGLAKVCKIIQNLLNRAYKRLDLEH--LFMDYKTALQELTQAQFCVIPTYQLLKEK 192

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           GPDH   F + + I     A     SK+ AEQ  A + L++
Sbjct: 193 GPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQK 233


>gi|328952899|ref|YP_004370233.1| Ribonuclease 3 [Desulfobacca acetoxidans DSM 11109]
 gi|328453223|gb|AEB09052.1| Ribonuclease 3 [Desulfobacca acetoxidans DSM 11109]
          Length = 231

 Score =  125 bits (313), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 118/221 (53%), Gaps = 5/221 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLIST 57
           M+ +  + LE+++ Y+F NR  LE+AL HSS ++ +     S ERLEF GD +L L IS 
Sbjct: 1   MTDIHLTELERQLRYSFKNRRWLEQALVHSSYAYEFPLQGPSNERLEFFGDAVLSLFISD 60

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            L  ++  A EG LS    SLV+A   + +AR LDL   +R+     +       S+ AD
Sbjct: 61  FLMEYYPQAGEGLLSRWRASLVNARHLAGIARSLDLGGHLRLGRGEEQQSGRRKPSVLAD 120

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEY 175
            +E+++AA+YLDGG   A   V   ++     L+     +D KT LQE+A     VTP Y
Sbjct: 121 ALEAVLAAVYLDGGFAAARGVVKLLFQASLTRLEDKASMQDFKTLLQEYAQKNLKVTPTY 180

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           +V   +GP H   F V V ++     +G   SK+ A Q AA
Sbjct: 181 RVVTATGPAHARTFEVEVWLADQPWGRGQGKSKKQAAQEAA 221


>gi|254785337|ref|YP_003072766.1| ribonuclease III [Teredinibacter turnerae T7901]
 gi|237684548|gb|ACR11812.1| ribonuclease III [Teredinibacter turnerae T7901]
          Length = 229

 Score =  125 bits (313), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 85/231 (36%), Positives = 126/231 (54%), Gaps = 12/231 (5%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           +S  + + L K + Y F++ SLLEKAL+H S+  +   + ERLEFLGD +L  LI+  L+
Sbjct: 4   LSKTKLNQLSKALNYTFSDISLLEKALSHRSVGSN---NNERLEFLGDSLLNFLIAENLY 60

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A+EG+LS    SLV  ET +++A++ DL  F+ +     K       SI AD VE
Sbjct: 61  QRFPKAREGDLSRLRASLVKGETLAELAKDFDLGEFLYLGEGELKSGGFRRASILADAVE 120

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI A+YL+ G++     V  ++ +R  A+      +D KT LQE+        P Y V 
Sbjct: 121 ALIGAIYLESGMDRCRDTVLHWFGERLDAIDLNSSVKDPKTRLQEYLQELRQPLPVYTVE 180

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQG----MDCSKRAAEQVAAAEVLKREGI 225
            + G  H P F V  +I     +QG       SKR AE++AAA +LK+ G+
Sbjct: 181 SQLGQAHSPEFQVSCDI---GRSQGKTVATSSSKRNAEKLAAAAMLKQLGV 228


>gi|226951500|ref|ZP_03821964.1| ds RNA ribonuclease III [Acinetobacter sp. ATCC 27244]
 gi|294651022|ref|ZP_06728362.1| ribonuclease III [Acinetobacter haemolyticus ATCC 19194]
 gi|226837793|gb|EEH70176.1| ds RNA ribonuclease III [Acinetobacter sp. ATCC 27244]
 gi|292823123|gb|EFF81986.1| ribonuclease III [Acinetobacter haemolyticus ATCC 19194]
          Length = 231

 Score =  125 bits (313), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 123/223 (55%), Gaps = 5/223 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           + L  + L+ RIGY F    LL+ ALTH S+SH +  +YERLEFLGD +LG++I+  L++
Sbjct: 7   NKLNDTRLQARIGYQFQQIDLLKLALTHRSVSHKH--NYERLEFLGDSLLGMIIANYLYH 64

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EG L+    +LV  E   ++A +L L+  + +S+   K       SI AD VE+
Sbjct: 65  TYPTENEGRLTRMRATLVRQEALGKIANDLQLSRSLILSTGELKSGGHHRESILADTVEA 124

Query: 122 LIAALYLDGG-IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +I A+Y+D   + +    V K+++     ++     +D K+ LQE+  A+    P Y+V 
Sbjct: 125 IIGAIYIDSNDLNLLQGIVLKWYEPYFDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVV 184

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              G   +  F V   + GL   QG   S+R AEQ AAAE+LK
Sbjct: 185 DIQGDAPNQHFKVECLVDGLPKIQGEGSSRRFAEQTAAAEILK 227


>gi|327394842|dbj|BAK12264.1| ribonuclease III Rnc [Pantoea ananatis AJ13355]
          Length = 226

 Score =  125 bits (313), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 125/228 (54%), Gaps = 6/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F +  LL++ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 1   MNPILINKLQRKLGYTFTHSELLQQALTHRSASSKHNE---RLEFLGDSILSYVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSDIQTVEKLILDWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKREGI 225
              G  HD  FT+  ++SG+A P  G+  S+R AEQ AA + L + G+
Sbjct: 178 QVRGEAHDQEFTIHCQVSGMAEPVVGVGSSRRKAEQAAAEQALIKLGL 225


>gi|295094866|emb|CBK83957.1| RNAse III [Coprococcus sp. ART55/1]
          Length = 229

 Score =  125 bits (313), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 83/219 (37%), Positives = 120/219 (54%), Gaps = 6/219 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           Y  LEKRIGY F +  LL  ALTH+S ++  +    ESYERLEFLGD IL  ++S  LF 
Sbjct: 5   YGELEKRIGYEFKDIRLLITALTHTSFANELKVNKTESYERLEFLGDAILEYIVSDYLFR 64

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
                +EG+L+    SLV   T SQ++  L    F+ +S    +       SI  D+ ES
Sbjct: 65  KKREYEEGKLTKLRASLVCEFTLSQISESLGYGKFVLLSKGEAQTGGRTRKSILCDLFES 124

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           ++ A+YLDGG++VA  FV ++          F  DAK+ LQE+   K G   +Y++    
Sbjct: 125 VLGAMYLDGGMDVAKKFVHQFLLDDVETKSLF-YDAKSTLQEFCQ-KNGKELKYELIEEK 182

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           GP+H+  F     I G A A+G   +++ +EQ+AA + L
Sbjct: 183 GPEHNKIFVSDALIDGQATARGEGSNRKNSEQMAAYKTL 221


>gi|219870402|ref|YP_002474777.1| ribonuclease III [Haemophilus parasuis SH0165]
 gi|254807496|sp|B8F3C7|RNC_HAEPS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|219690606|gb|ACL31829.1| ribonuclease III/dsRNA-specific ribonuclease [Haemophilus parasuis
           SH0165]
          Length = 223

 Score =  125 bits (313), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 82/225 (36%), Positives = 125/225 (55%), Gaps = 6/225 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++   L+K++GY FAN   L +ALTH S +    ++ ERLEFLGD IL   I   L+  F
Sbjct: 1   MQLERLQKKLGYQFANLDYLTQALTHRSAAS---KNNERLEFLGDSILNFAIGKALYEKF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EGELS    +LV  +T + VAR+ +L  ++++ +   K       SI +D VE++I
Sbjct: 58  PKANEGELSRMRAALVKEQTLAVVARQFELGEYMKLGAGELKSGGYRRESILSDCVEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+YLD GI+ A   V  +++Q    ++ G+ ++D KT LQE+   +    P Y+V    
Sbjct: 118 AAVYLDAGIDRAMERVHCWYQQLLNDMQLGEAQKDPKTRLQEYLQGRKLPLPTYEVIDIK 177

Query: 182 GPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREGI 225
           G  H+  F V  ++  +     G   S+R AEQ AA +V+K  GI
Sbjct: 178 GEAHNQTFKVSCKVEKVDEIFIGNGTSRRKAEQDAALQVIKVLGI 222


>gi|153810622|ref|ZP_01963290.1| hypothetical protein RUMOBE_01006 [Ruminococcus obeum ATCC 29174]
 gi|149833018|gb|EDM88100.1| hypothetical protein RUMOBE_01006 [Ruminococcus obeum ATCC 29174]
          Length = 223

 Score =  125 bits (313), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 79/206 (38%), Positives = 114/206 (55%), Gaps = 7/206 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
           LE+ IGY F N+ LL++ALTHSS ++  +       ERLEFLGD +L L+ S  L+  F 
Sbjct: 4   LEQIIGYTFQNKKLLKQALTHSSYANEKKLGKLGCNERLEFLGDAVLELISSDFLYAKFT 63

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGEL+ +  SLV   + +  AR+  L  ++ +             SI +D  E+L+ 
Sbjct: 64  QVPEGELTKKRASLVCEPSLAYCARQFGLPQYLLLGKGENMTGGRNRDSIVSDATEALLG 123

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP-EYKVTFRSGP 183
           A+YLDGG E A  FV K+     ++  +   D+KT LQE    K G+ P EY +T  SGP
Sbjct: 124 AIYLDGGFEPAKDFVLKFI-LNDIEHKQLFYDSKTILQEIVQEK-GIQPVEYILTGESGP 181

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKR 209
           DHD +FTV V+++G     G   +K+
Sbjct: 182 DHDKQFTVSVQVNGQVVGNGTGHTKK 207


>gi|188533138|ref|YP_001906935.1| ribonuclease III [Erwinia tasmaniensis Et1/99]
 gi|238691985|sp|B2VI46|RNC_ERWT9 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|188028180|emb|CAO96038.1| Ribonuclease III [Erwinia tasmaniensis Et1/99]
          Length = 226

 Score =  125 bits (313), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 81/228 (35%), Positives = 123/228 (53%), Gaps = 6/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINKLQRKLGYTFTHQELLQQALTHRSASSKHNE---RLEFLGDSILSYVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  QRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGYRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  ++  R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSDIQAVEQLILSWYASRLDQISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKREGI 225
              G  HD  FT+  ++SG+A P  G   S+R AEQ AA + L + GI
Sbjct: 178 QVRGEAHDQEFTIHCQVSGMAEPVVGTGSSRRKAEQAAAEQALIKLGI 225


>gi|153951733|ref|YP_001398912.1| ribonuclease III [Campylobacter jejuni subsp. doylei 269.97]
 gi|189043301|sp|A7H5Y2|RNC_CAMJD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|152939179|gb|ABS43920.1| ribonuclease III [Campylobacter jejuni subsp. doylei 269.97]
          Length = 225

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 77/220 (35%), Positives = 125/220 (56%), Gaps = 8/220 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE+ + Y F +++LL  ALTH S   SY  + ERLEFLGD +L L++   LF+ F    E
Sbjct: 7   LEQSLTYEFKDKNLLIHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLFHKFTKDAE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    +LV+ ++ +++A  L+L  FI +S     +      SI +D +E++I A++L
Sbjct: 65  GDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGKEKPSILSDALEAIIGAIHL 124

Query: 129 DGGIEVAGT----FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           + G E A T     ++K + Q  + +    +D KT+LQE    K G TP+Y+     GPD
Sbjct: 125 EAGFEFAKTIALRLMEKNFPQ--IDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPD 182

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           H  +F + + + G   A+ +  SK+ A+Q+AA   L++ G
Sbjct: 183 HLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 222


>gi|124265843|ref|YP_001019847.1| ribonuclease III [Methylibium petroleiphilum PM1]
 gi|124258618|gb|ABM93612.1| Ribonuclease III [Methylibium petroleiphilum PM1]
          Length = 248

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 75/193 (38%), Positives = 106/193 (54%), Gaps = 5/193 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           + +L+ R+G+ FA   LL +ALTH S      ++ ERLEFLGD +L   IS LLF HF  
Sbjct: 23  FDSLQVRLGHRFAQVGLLGRALTHKSFG---ADNNERLEFLGDAVLSAAISGLLFEHFGQ 79

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           + EG+L+     LV  E   ++A +L L + +R+S    +   +   SI AD VE+LIAA
Sbjct: 80  SGEGDLTRVRAHLVREEMLHRLALDLGLPALLRLSEGEARSGGARRPSILADAVEALIAA 139

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YLDGG   A   V++ +      +    + RD KTELQEW  A+    P Y++    G 
Sbjct: 140 VYLDGGFASAQALVERLFTPLVASTAAEAWTRDPKTELQEWLQARRQPVPGYRIESTRGR 199

Query: 184 DHDPRFTVVVEIS 196
            H+  FTVV  I 
Sbjct: 200 QHEQMFTVVCSIP 212


>gi|20807916|ref|NP_623087.1| dsRNA-specific ribonuclease [Thermoanaerobacter tengcongensis MB4]
 gi|22654052|sp|Q8R9W3|RNC_THETN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|20516484|gb|AAM24691.1| dsRNA-specific ribonuclease [Thermoanaerobacter tengcongensis MB4]
          Length = 228

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 83/223 (37%), Positives = 122/223 (54%), Gaps = 7/223 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDS 65
           LE++I Y F +++LL +ALTHSS +H  +    S ERLEFLGD +L L+IS  L+ +   
Sbjct: 5   LEQKINYEFKDKTLLLEALTHSSWAHEGKNEKVSNERLEFLGDSVLSLVISEYLYKNRKD 64

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
            +EG LS     +V   + ++ AR+++L SF+R+             SI AD +E+L+AA
Sbjct: 65  LEEGSLSKYRAEIVCEPSLARCARKIELGSFLRMGKGEEISGGRDRDSILADAMEALLAA 124

Query: 126 LYLDGGIEVAGTFVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +YLDGG+E     +   +K+     LK G   RD KT LQE   +       Y++    G
Sbjct: 125 VYLDGGLEAVRRVILDLFKEIIDEVLK-GIIYRDYKTRLQEVVQSMEVGKITYELVEEIG 183

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           PDH+  F   V+I  +    G   SK+ +EQ AA E L + GI
Sbjct: 184 PDHNKTFVTQVKIGDVVLGIGQGKSKKESEQAAAMEALSKLGI 226


>gi|170719010|ref|YP_001784170.1| ribonuclease III [Haemophilus somnus 2336]
 gi|189043321|sp|B0USS1|RNC_HAES2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|168827139|gb|ACA32510.1| Ribonuclease III [Haemophilus somnus 2336]
          Length = 223

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 125/222 (56%), Gaps = 6/222 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++   L+K++G+ F N   L++ALTH S +     + ERLEFLGD IL   I   L+  F
Sbjct: 1   MQLEKLQKKLGHQFTNLDYLKQALTHRSAAAF---NNERLEFLGDSILNFAIGKALYEKF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             + EGELS    +LV  +T + VAR+++L  ++++ +   K       SI +D VE+LI
Sbjct: 58  PKSNEGELSRMRATLVKEQTLAVVARQVELGDYLKLGAGELKSGGFRRESILSDCVEALI 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+YLD GI+VA   V +++++    +K G+ ++D KT LQE+        PEY+V    
Sbjct: 118 AAIYLDAGIDVALARVYQWYQELLEQIKPGEAQKDPKTRLQEFLQGHRLKLPEYEVIEIK 177

Query: 182 GPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKR 222
           G  H+  F V  ++  L     G   S+R AEQ AA + +++
Sbjct: 178 GDAHNQSFRVSCKVETLTDVVFGQGTSRRKAEQHAAQQAIEK 219


>gi|86158075|ref|YP_464860.1| ribonuclease III [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774586|gb|ABC81423.1| RNAse III [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 385

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 77/214 (35%), Positives = 117/214 (54%), Gaps = 8/214 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNH 62
             LE R+G A A+R     ALTH S  + ++E      ERLEFLGD ++ L +S  L   
Sbjct: 26  GALEARLGLAVADREAALAALTHKSYVNEHREDGLQDNERLEFLGDAVIDLAVSHRLMER 85

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F SA+EG+LS    ++V  +  +++AR LDL + +R+            +S+ AD +E++
Sbjct: 86  FPSAREGDLSKMRAAVVDEQGLAEMARTLDLGALLRLGRGEELTGGRQKSSLLADAMEAV 145

Query: 123 IAALYLDGGIEVAGTFVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           IAA+Y   G+    +FVD++  +   RA  +G   RD KT+LQE + ++   TP Y+V  
Sbjct: 146 IAAIYRGQGLPAVLSFVDRFLGEAFARA-AAGTLDRDFKTQLQELSQSRLRATPRYRVVA 204

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
             GPDH   F V  ++ G    +G   SK+ AEQ
Sbjct: 205 EHGPDHSKTFEVETDLRGEVMGRGAGRSKKDAEQ 238


>gi|113461383|ref|YP_719452.1| ribonuclease III [Haemophilus somnus 129PT]
 gi|112823426|gb|ABI25515.1| RNAse III [Haemophilus somnus 129PT]
          Length = 227

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 125/222 (56%), Gaps = 6/222 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++   L+K++G+ F N   L++ALTH S +     + ERLEFLGD IL   I   L+  F
Sbjct: 5   MQLEKLQKKLGHQFTNLDYLKQALTHRSAAAF---NNERLEFLGDSILNFAIGKALYEKF 61

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             + EGELS    +LV  +T + VAR+++L  ++++ +   K       SI +D VE+LI
Sbjct: 62  PKSNEGELSRMRATLVKEQTLAVVARQVELGDYLKLGAGELKSGGFRRESILSDCVEALI 121

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+YLD GI+VA   V +++++    +K G+ ++D KT LQE+        PEY+V    
Sbjct: 122 AAIYLDAGIDVALARVYQWYQELLEQIKPGEAQKDPKTRLQEFLQGHRLKLPEYEVIEIK 181

Query: 182 GPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKR 222
           G  H+  F V  ++  L     G   S+R AEQ AA + +++
Sbjct: 182 GDAHNQSFRVSCKVETLTDVVFGQGTSRRKAEQHAAQQAIEK 223


>gi|320536816|ref|ZP_08036812.1| ribonuclease III [Treponema phagedenis F0421]
 gi|320146325|gb|EFW37945.1| ribonuclease III [Treponema phagedenis F0421]
          Length = 243

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 81/215 (37%), Positives = 112/215 (52%), Gaps = 8/215 (3%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESY---ERLEFLGDRILGLLISTLLFNHFD 64
             +K+ G+ F N  LL  A  H S SH ++ S+   ERLEFLGD +LGL+ ++ L+N   
Sbjct: 18  NFQKKAGFKFKNLKLLNLAFHHRSFSHIHEASFQNNERLEFLGDSVLGLVTASCLYNLLS 77

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGEL+     LVS ET S +A  LD+  +I +             +I AD +E++I 
Sbjct: 78  DCSEGELAKTKAVLVSEETLSDIALSLDVDKYIMLGRGEEMSGGRRKKAILADAMEAIIG 137

Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           ALYLD G +VA  FV +    +   +++     D K+ LQE +  KF + P Y V    G
Sbjct: 138 ALYLDSGFKVAEKFVLRIITPKIPLVRNENLHMDYKSALQELSQKKFQILPLYTVVKAQG 197

Query: 183 PDHDPRFTVVVEI--SGLAPAQGMDCSKRAAEQVA 215
           PDHD  F V V+I      PA G    K AA+ VA
Sbjct: 198 PDHDRTFWVEVQIHTKKYGPATG-KSKKEAAQAVA 231


>gi|297379862|gb|ADI34749.1| ribonuclease III [Helicobacter pylori v225d]
          Length = 238

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 122/221 (55%), Gaps = 8/221 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y+TLEK +GY+F ++ LLE+ALTH S   +     ERLEFLGD +LGL+I  LL++ F  
Sbjct: 17  YATLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 74

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VS    +++A+ + L  ++RVSS           SI +   E+L+A 
Sbjct: 75  YDEGKLSKLRASIVSTHGFTKLAKVIALQDYLRVSSSEEISNGREKPSILSSAFEALMAG 134

Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +YL+ G+    ++    +++ +K+  L+      D KT LQE   A+F V P Y++    
Sbjct: 135 VYLEAGLAKVRKIIQNLLNRAYKRLDLEH--LFMDYKTALQELTQAQFCVIPTYQLLKEK 192

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           GPDH   F + + I     A     SK+ AEQ  A + L++
Sbjct: 193 GPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQK 233


>gi|292489090|ref|YP_003531977.1| RNase III, ds RNA [Erwinia amylovora CFBP1430]
 gi|292900214|ref|YP_003539583.1| Ribonuclease III [Erwinia amylovora ATCC 49946]
 gi|291200062|emb|CBJ47188.1| Ribonuclease III [Erwinia amylovora ATCC 49946]
 gi|291554524|emb|CBA22094.1| RNase III, ds RNA [Erwinia amylovora CFBP1430]
 gi|312173248|emb|CBX81503.1| RNase III, ds RNA [Erwinia amylovora ATCC BAA-2158]
          Length = 226

 Score =  124 bits (312), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 81/228 (35%), Positives = 123/228 (53%), Gaps = 6/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINKLQRKLGYTFTHQELLQQALTHRSASSKHNE---RLEFLGDSILSYVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  QRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGYRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  ++  R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSDIQRVEQLILSWYASRLDQISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKREGI 225
              G  HD  FT+  ++SG+A P  G   S+R AEQ AA + L + GI
Sbjct: 178 QVRGEAHDQEFTIHCQVSGMADPVVGTGSSRRKAEQAAAEQALTKLGI 225


>gi|57168805|ref|ZP_00367936.1| ribonuclease III Cj1635c [Campylobacter coli RM2228]
 gi|57019852|gb|EAL56535.1| ribonuclease III Cj1635c [Campylobacter coli RM2228]
          Length = 224

 Score =  124 bits (312), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 126/220 (57%), Gaps = 8/220 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE+++ Y F ++ LL  ALTH S    Y    ERLEFLGD +L L++   LF+ F    E
Sbjct: 7   LEQKLAYKFKDKDLLIHALTHKSFKKPYNN--ERLEFLGDAVLDLVVGEYLFHKFAKDAE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    +LV+ ++ +++A  L+L  FI +S+    +      SI +D +E+++ A++L
Sbjct: 65  GDLSKLRAALVNEKSFAKIANSLNLGDFIFMSAAEENNGGKEKPSILSDALEAIMGAIHL 124

Query: 129 DGGIE----VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           + G +    +A   ++K + Q  + +    +D KT+LQE   AK G TP+Y+     GPD
Sbjct: 125 EAGFDFARNIALKLIEKNFPQ--IDAKNLIKDYKTKLQEITQAKLGQTPQYETVRAFGPD 182

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           H  +F + + ++G   A+ +  +K+ A+Q+AA   L++ G
Sbjct: 183 HLKQFEIALFLNGQELARAIAGNKKEAQQMAAKITLEKLG 222


>gi|33152642|ref|NP_873995.1| ribonuclease III [Haemophilus ducreyi 35000HP]
 gi|73917578|sp|Q7VL75|RNC_HAEDU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|33148866|gb|AAP96384.1| ribonuclease III [Haemophilus ducreyi 35000HP]
          Length = 222

 Score =  124 bits (312), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 81/215 (37%), Positives = 119/215 (55%), Gaps = 6/215 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L+K+IGY FAN   L +ALTH S +    ++ ERLEFLGD IL   I   LF  F  A E
Sbjct: 6   LQKKIGYQFANLDYLLQALTHRSAAA---KNNERLEFLGDSILNYAIGQALFERFPQANE 62

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELS    +LV  +T + +AR+ DL  ++++ +   K       SI +D VE++IAA+YL
Sbjct: 63  GELSRMRATLVREQTLAILARQFDLGEYMKLGAGELKSGGYRRESILSDCVEAIIAAIYL 122

Query: 129 DGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D G++ A   +  +++     +K G  ++D KT LQE+   +    PEY+V    G  H+
Sbjct: 123 DAGMDKASERIYAWYQTLLDEMKPGDAQKDPKTRLQEFLQGRRLKLPEYEVLDIKGEAHN 182

Query: 187 PRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVL 220
             F V  +I        G+  S+R AEQ AA ++L
Sbjct: 183 QIFKVSCKIETFTDIFIGIGTSRRKAEQNAAEQIL 217


>gi|208434584|ref|YP_002266250.1| ribonuclease III [Helicobacter pylori G27]
 gi|226741372|sp|B5Z735|RNC_HELPG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|208432513|gb|ACI27384.1| ribonuclease III [Helicobacter pylori G27]
          Length = 239

 Score =  124 bits (312), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 122/221 (55%), Gaps = 8/221 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y+TLEK +GY+F ++ LLE+ALTH S   +     ERLEFLGD +LGL+I  LL++ F  
Sbjct: 18  YTTLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 75

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    ++VSA   +++A+ + L  ++RVSS           SI +   E+L+A 
Sbjct: 76  YDEGKLSKLRAAIVSAHGFTKLAKAIALQDYLRVSSSEEISKGREKPSILSSAFEALMAG 135

Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +YL+ G+    ++    +++ +K+  L+      D KT LQE   A+F V P Y++    
Sbjct: 136 VYLEAGLAKVRKIIQNLLNRAYKRLDLEH--LFMDYKTALQELTQAQFCVIPTYQLLQEK 193

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           GPDH   F + + I     A     SK+ AEQ  A   L++
Sbjct: 194 GPDHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYYALQK 234


>gi|317049180|ref|YP_004116828.1| ribonuclease III [Pantoea sp. At-9b]
 gi|316950797|gb|ADU70272.1| ribonuclease III [Pantoea sp. At-9b]
          Length = 226

 Score =  124 bits (312), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 125/228 (54%), Gaps = 6/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F +  LL++ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 1   MNPILINKLQRKLGYTFTHPELLQQALTHRSASSKHNE---RLEFLGDSILSYVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGIFLDSNIQNVEKLILDWYQTRLEQISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKREGI 225
              G  HD  FT+  ++SG+A P  G+  S+R AEQ AA + L + G+
Sbjct: 178 QVRGEAHDQEFTIHCQVSGMAEPVVGVGSSRRKAEQAAAEQALIKLGL 225


>gi|305432452|ref|ZP_07401614.1| ribonuclease III [Campylobacter coli JV20]
 gi|304444491|gb|EFM37142.1| ribonuclease III [Campylobacter coli JV20]
          Length = 225

 Score =  124 bits (312), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 126/220 (57%), Gaps = 8/220 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE+++ Y F ++ LL  ALTH S    Y    ERLEFLGD +L L++   LF+ F    E
Sbjct: 8   LEQKLAYKFKDKDLLIHALTHKSFKKPYNN--ERLEFLGDAVLDLVVGEYLFHKFAKDAE 65

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    +LV+ ++ +++A  L+L  FI +S+    +      SI +D +E+++ A++L
Sbjct: 66  GDLSKLRAALVNEKSFAKIANSLNLGDFIFMSAAEENNGGKEKPSILSDALEAIMGAIHL 125

Query: 129 DGGIE----VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           + G +    +A   ++K + Q  + +    +D KT+LQE   AK G TP+Y+     GPD
Sbjct: 126 EAGFDFARNIALKLIEKNFPQ--IDAKNLIKDYKTKLQEITQAKLGQTPQYETVRAFGPD 183

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           H  +F + + ++G   A+ +  +K+ A+Q+AA   L++ G
Sbjct: 184 HLKQFEIALFLNGQELARAIAGNKKEAQQMAAKITLEKLG 223


>gi|254507535|ref|ZP_05119669.1| ribonuclease III [Vibrio parahaemolyticus 16]
 gi|219549605|gb|EED26596.1| ribonuclease III [Vibrio parahaemolyticus 16]
          Length = 225

 Score =  124 bits (312), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 113/206 (54%), Gaps = 6/206 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + LEK++GY F +  L+  ALTH S +  + E   RLEFLGD IL  +I+  L++ F   
Sbjct: 6   AKLEKKVGYQFNDAELINLALTHRSANGKHNE---RLEFLGDSILSFVIADDLYHRFPKV 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG++S    +LV   T +++ RE +L   +++     K       SI AD VE++I A+
Sbjct: 63  NEGDMSRMRATLVRGNTLAELGREFELGDHLKLGPGELKSGGFRRDSILADAVEAIIGAI 122

Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD  IEV  + +  +++ R  A+K G  ++D KT LQE+   +    P Y VT   G  
Sbjct: 123 YLDSDIEVVRSIILSWYQSRLDAIKPGVSQKDPKTRLQEFLQGRRKPLPAYTVTNIKGEA 182

Query: 185 HDPRFTVVVEISGLA-PAQGMDCSKR 209
           H+  FTV  E++G+  P  G   S+R
Sbjct: 183 HNQEFTVSCEVAGIGQPVIGKGTSRR 208


>gi|168184661|ref|ZP_02619325.1| ribonuclease III [Clostridium botulinum Bf]
 gi|237795890|ref|YP_002863442.1| ribonuclease III [Clostridium botulinum Ba4 str. 657]
 gi|182672267|gb|EDT84228.1| ribonuclease III [Clostridium botulinum Bf]
 gi|229262399|gb|ACQ53432.1| ribonuclease III [Clostridium botulinum Ba4 str. 657]
          Length = 234

 Score =  124 bits (312), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 83/221 (37%), Positives = 122/221 (55%), Gaps = 6/221 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           L+ ++   F N  LL+ ALTHSS ++  +  + YERLEFLGD +L L+IS  L+  ++  
Sbjct: 11  LQYKLKVYFKNEKLLDVALTHSSYANGKKNIKYYERLEFLGDSVLQLIISEHLYQKYEDK 70

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           KEGEL+ +   +V   +  ++A+  DL  ++++S            SI AD VES+IAA+
Sbjct: 71  KEGELTRKRAIIVCENSLYEIAKRWDLGLYLQMSKGEELTGGRERVSILADCVESIIAAI 130

Query: 127 YLDGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           YLD G++ A  FV K +K   ++A+K  +   D KT LQE       +T  Y++  + GP
Sbjct: 131 YLDKGLDHAREFVMKNFKEIIEKAMKD-EIILDYKTTLQEIVQQNNDLTINYELLKQEGP 189

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            H  RF   V I       G+  SK+ AEQ AA E LK  G
Sbjct: 190 PHRRRFFTNVTIDNEVRGTGIGYSKKEAEQNAAREALKNLG 230


>gi|260598950|ref|YP_003211521.1| ribonuclease III [Cronobacter turicensis z3032]
 gi|260218127|emb|CBA32925.1| Ribonuclease 3 [Cronobacter turicensis z3032]
          Length = 236

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 124/225 (55%), Gaps = 6/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 11  MNPIVINRLQRKLGYTFHHQDLLQQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 67

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 68  HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 127

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 128 ALIGGIFLDSDIQTVERLILTWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 187

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222
              G  HD  FT+  ++SGL+ P  G   S+R AEQ AA + LK+
Sbjct: 188 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQALKK 232


>gi|167854942|ref|ZP_02477717.1| GTP-binding protein LepA [Haemophilus parasuis 29755]
 gi|167853899|gb|EDS25138.1| GTP-binding protein LepA [Haemophilus parasuis 29755]
          Length = 223

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 82/225 (36%), Positives = 125/225 (55%), Gaps = 6/225 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++   L+K++GY FAN   L +ALTH S +    ++ ERLEFLGD IL   I   L+  F
Sbjct: 1   MQLERLQKKLGYQFANLDYLTQALTHRSAAS---KNNERLEFLGDSILNFAIGKALYEKF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EGELS    +LV  +T + VAR+ +L  ++++ +   K       SI +D VE++I
Sbjct: 58  PKADEGELSRMRAALVKEQTLAVVARQFELGEYMKLGAGELKSGGYRRESILSDCVEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+YLD GI+ A   V  +++Q    ++ G+ ++D KT LQE+   +    P Y+V    
Sbjct: 118 AAVYLDAGIDRAMERVHCWYQQLLNDMQLGEAQKDPKTRLQEYLQGRKLPLPTYEVIDIK 177

Query: 182 GPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREGI 225
           G  H+  F V  ++  +     G   S+R AEQ AA +V+K  GI
Sbjct: 178 GEAHNQTFKVSCKVEKVDEIFIGNGTSRRKAEQDAALQVIKVLGI 222


>gi|148380412|ref|YP_001254953.1| ribonuclease III [Clostridium botulinum A str. ATCC 3502]
 gi|148289896|emb|CAL84004.1| putative ribonuclease III [Clostridium botulinum A str. ATCC 3502]
          Length = 237

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 83/221 (37%), Positives = 122/221 (55%), Gaps = 6/221 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           L+ ++   F N  LL+ ALTHSS ++  +  + YERLEFLGD +L L+IS  L+  ++  
Sbjct: 14  LQYKLKVYFKNEKLLDVALTHSSYANGKKNIKYYERLEFLGDSVLQLIISEHLYQKYEDK 73

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           KEGEL+ +   +V   +  ++A+  DL  ++++S            SI AD VES+IAA+
Sbjct: 74  KEGELTRKRAIIVCENSLYEIAKRWDLGFYLQMSKGEELTGGRERVSILADCVESIIAAI 133

Query: 127 YLDGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           YLD G++ A  FV K +K   ++A+K  +   D KT LQE       +T  Y++  + GP
Sbjct: 134 YLDKGLDHAREFVMKNFKEIIEKAMKD-EIILDYKTTLQEIVQQNNDLTINYELLKQEGP 192

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            H  RF   V I       G+  SK+ AEQ AA E LK  G
Sbjct: 193 PHRRRFFTNVTIDNEVRGTGIGYSKKEAEQNAAREALKNLG 233


>gi|224372163|ref|YP_002606535.1| ribonuclease III [Nautilia profundicola AmH]
 gi|223589278|gb|ACM93014.1| ribonuclease III [Nautilia profundicola AmH]
          Length = 226

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 125/225 (55%), Gaps = 7/225 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++ S LEK +GY F N+ L+ +ALTH S  +  + + ERLEFLGD ++ L++   LF+ F
Sbjct: 1   MQISELEKSLGYQFKNKKLITEALTHRS--YKKEVNNERLEFLGDAVMDLIVGEYLFHLF 58

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A+EG LS    +LV+ ++ +++A+ L+L  ++ +S     +      SI +   E++I
Sbjct: 59  PKAEEGILSKLRAALVNEDSFTRLAKRLNLGKYLYLSPAEENNNGREKPSILSSAFEAVI 118

Query: 124 AALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+YL+ G E A     +  K+    +   +  +D KT LQE   A FGV PEY++   S
Sbjct: 119 GAIYLEAGFEKAKDVALRLLKEEFPIITPEELLKDYKTTLQEITQAHFGVVPEYRLISAS 178

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA---AEVLKRE 223
           GPDH   F + V I     A+    SK+ A+Q  A    ++LK+E
Sbjct: 179 GPDHKKEFEIGVFIQDKEYARAKGKSKKTAQQEGARLTIDMLKKE 223


>gi|295097900|emb|CBK86990.1| RNAse III [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 226

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 123/224 (54%), Gaps = 6/224 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFHHQELLQQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221
              G  HD  FT+  ++SGL+ P  G   S+R AEQ AA + LK
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQALK 221


>gi|77165916|ref|YP_344441.1| ribonuclease III [Nitrosococcus oceani ATCC 19707]
 gi|254434280|ref|ZP_05047788.1| ribonuclease III [Nitrosococcus oceani AFC27]
 gi|90101630|sp|Q3J8D5|RNC_NITOC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|76884230|gb|ABA58911.1| RNAse III [Nitrosococcus oceani ATCC 19707]
 gi|207090613|gb|EDZ67884.1| ribonuclease III [Nitrosococcus oceani AFC27]
          Length = 233

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 82/211 (38%), Positives = 119/211 (56%), Gaps = 14/211 (6%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
           +++GY FA  +LL  A+TH S +   +E+ ERLEFLGD IL  LI+  L++ F  A+EGE
Sbjct: 10  RKLGYRFAEPALLRHAITHRSAT---KENNERLEFLGDSILNFLIADFLYSGFPRAQEGE 66

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           LS    +LV  ET +++AREL++   + +     K      TSI AD  E++I A+YLDG
Sbjct: 67  LSRLRATLVKGETLAELARELEIGDHLILGLGELKSGGYRRTSILADAFEAVIGAVYLDG 126

Query: 131 GIEVAGTFVDKYWKQR-------ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           G+E     V   ++ R       AL + K   D KT LQE+  A+    P+Y+V+  SG 
Sbjct: 127 GLEACRKLVSSLYRDRLETLTNEALLNLK---DPKTRLQEYLQARQFPLPDYRVSAVSGE 183

Query: 184 DHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQ 213
            HD  F V   ++   P+  G+  S+R AEQ
Sbjct: 184 AHDQVFQVECTLNNTFPSVIGIGRSRRKAEQ 214


>gi|317057716|ref|YP_004106183.1| ribonuclease III [Ruminococcus albus 7]
 gi|315449985|gb|ADU23549.1| ribonuclease III [Ruminococcus albus 7]
          Length = 232

 Score =  124 bits (312), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 120/222 (54%), Gaps = 6/222 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDS 65
            +K+IGY F N  LL +AL+HSS ++  ++   S ERLEFLGD +L +++S  +F HF  
Sbjct: 10  FQKKIGYHFKNEKLLYEALSHSSFANENKKQRHSNERLEFLGDSVLSIVVSDHIFEHFKH 69

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGEL+    SLV  +   + + +++L  +I +             SI +D +E++IAA
Sbjct: 70  LPEGELTKLRASLVCEKALFEFSHKIELGKYIFLGKGEELTGGRERASIVSDAMEAVIAA 129

Query: 126 LYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YLDGG+E A   +  +  +      +  F  D KT LQE          EY +    GP
Sbjct: 130 IYLDGGLEAARKHIMNFLPKDLNPAHTDTF-HDYKTVLQEIIQRNPEEKVEYFLKGEDGP 188

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           DHD RFTV V+++     +G+  SK+ AEQ AA E L   G+
Sbjct: 189 DHDKRFTVQVKLNNNVIGEGIGRSKKNAEQNAAKEALALMGV 230


>gi|153930813|ref|YP_001384630.1| ribonuclease III [Clostridium botulinum A str. ATCC 19397]
 gi|153937224|ref|YP_001388147.1| ribonuclease III [Clostridium botulinum A str. Hall]
 gi|153940610|ref|YP_001391753.1| ribonuclease III [Clostridium botulinum F str. Langeland]
 gi|168180664|ref|ZP_02615328.1| ribonuclease III [Clostridium botulinum NCTC 2916]
 gi|226949808|ref|YP_002804899.1| ribonuclease III [Clostridium botulinum A2 str. Kyoto]
 gi|152926857|gb|ABS32357.1| ribonuclease III [Clostridium botulinum A str. ATCC 19397]
 gi|152933138|gb|ABS38637.1| ribonuclease III [Clostridium botulinum A str. Hall]
 gi|152936506|gb|ABS42004.1| ribonuclease III [Clostridium botulinum F str. Langeland]
 gi|182668630|gb|EDT80609.1| ribonuclease III [Clostridium botulinum NCTC 2916]
 gi|226841844|gb|ACO84510.1| ribonuclease III [Clostridium botulinum A2 str. Kyoto]
 gi|295319777|gb|ADG00155.1| ribonuclease III [Clostridium botulinum F str. 230613]
 gi|322806720|emb|CBZ04289.1| ribonuclease III [Clostridium botulinum H04402 065]
          Length = 234

 Score =  124 bits (311), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 83/221 (37%), Positives = 122/221 (55%), Gaps = 6/221 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           L+ ++   F N  LL+ ALTHSS ++  +  + YERLEFLGD +L L+IS  L+  ++  
Sbjct: 11  LQYKLKVYFKNEKLLDVALTHSSYANGKKNIKYYERLEFLGDSVLQLIISEHLYQKYEDK 70

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           KEGEL+ +   +V   +  ++A+  DL  ++++S            SI AD VES+IAA+
Sbjct: 71  KEGELTRKRAIIVCENSLYEIAKRWDLGFYLQMSKGEELTGGRERVSILADCVESIIAAI 130

Query: 127 YLDGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           YLD G++ A  FV K +K   ++A+K  +   D KT LQE       +T  Y++  + GP
Sbjct: 131 YLDKGLDHAREFVMKNFKEIIEKAMKD-EIILDYKTTLQEIVQQNNDLTINYELLKQEGP 189

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            H  RF   V I       G+  SK+ AEQ AA E LK  G
Sbjct: 190 PHRRRFFTNVTIDNEVRGTGIGYSKKEAEQNAAREALKNLG 230


>gi|116515099|ref|YP_802728.1| hypothetical protein BCc_163 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|122285505|sp|Q057R4|RNC_BUCCC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|116256953|gb|ABJ90635.1| ribonuclease III [Buchnera aphidicola str. Cc (Cinara cedri)]
          Length = 226

 Score =  124 bits (311), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 119/225 (52%), Gaps = 6/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +    L+K IGY F N +LL+ ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVMKKLQKFIGYTFTNITLLKHALTHRSASSQHNE---RLEFLGDSILSFIIAKALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           +HF    EG +S    +LV   T +++A E  L  ++++    +K       SI A+ +E
Sbjct: 58  HHFPKMNEGGMSRMRATLVRGNTLAEIATEFSLGKYLQLGQGEKKSGGFKRESILANAIE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++IA+++LD  I      +  ++K R   +     ++D KT LQE+  +K    P Y + 
Sbjct: 118 AIIASIFLDSNIYTVERIILYWYKNRFKKMNPTGTKKDPKTRLQEYLQSKHFSLPIYSIG 177

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKR 222
              G  H+  FT+  +I GL+    G+  S+R AEQ AA   L R
Sbjct: 178 QIYGEAHNQIFTIYCKIDGLSELLIGIGASRRKAEQDAAQNALIR 222


>gi|119944412|ref|YP_942092.1| ribonuclease III [Psychromonas ingrahamii 37]
 gi|189043334|sp|A1SSM8|RNC_PSYIN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|119863016|gb|ABM02493.1| RNAse III [Psychromonas ingrahamii 37]
          Length = 228

 Score =  124 bits (311), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 79/214 (36%), Positives = 116/214 (54%), Gaps = 5/214 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE+R+ Y F++ SLL++ALTH S   ++ E   RLEFLGD IL   IST L+  F    E
Sbjct: 11  LERRVDYTFSDFSLLQQALTHRSALGNHNE---RLEFLGDSILSYAISTDLYARFPKVDE 67

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    +LV  +  +++ RE  L   + +     K       SI AD VE++I A +L
Sbjct: 68  GDLSRMRATLVCGKMLAEIGREFQLGDCLILGPGELKSGGFRRDSIIADGVEAIIGAAFL 127

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D  I+     + K++  R   ++ G  ++D KT LQE   ++    P Y+V    G  H+
Sbjct: 128 DSDIDTVKKLILKWFDSRLNTIEPGISQKDPKTRLQEHLQSRKQPLPIYEVLEIKGEAHN 187

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            RFT+   I GL   QG   S+R AEQ+AA ++L
Sbjct: 188 QRFTMSCSIDGLKSVQGQGTSRRKAEQIAANKML 221


>gi|328955642|ref|YP_004372975.1| RNAse III [Coriobacterium glomerans PW2]
 gi|328455966|gb|AEB07160.1| RNAse III [Coriobacterium glomerans PW2]
          Length = 241

 Score =  124 bits (311), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 85/218 (38%), Positives = 113/218 (51%), Gaps = 3/218 (1%)

Query: 10  EKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           E+   + FA+R LL  ALTH S         SYERLEFLGD ILG +++  LFN + S  
Sbjct: 11  EQICHHRFADRQLLRCALTHPSAVEGQPVCASYERLEFLGDSILGAIVAVALFNSYPSID 70

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG L+    SLVS    S V  EL +   I   +         M S   +V ESL+AA+Y
Sbjct: 71  EGRLTRLKVSLVSGAMLSDVGLELGIDRCIIFGASETGTGARGMHSALENVYESLVAAMY 130

Query: 128 LDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           LDGG +VA  F+ +  +   A    +   + K+ LQE      G  P YK+   SGP H+
Sbjct: 131 LDGGWDVAEAFILRTLEPHLADDRPESVSNPKSILQERVQEDHGEPPCYKLVGMSGPAHE 190

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           P FT VV + G+   +G   SK+ AE  AA + L+R G
Sbjct: 191 PTFTAVVLVDGVRCGRGTGSSKKEAEASAARDALERMG 228


>gi|311278500|ref|YP_003940731.1| ribonuclease III [Enterobacter cloacae SCF1]
 gi|308747695|gb|ADO47447.1| ribonuclease III [Enterobacter cloacae SCF1]
          Length = 226

 Score =  124 bits (311), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 124/225 (55%), Gaps = 6/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFHHQELLQQALTHRSASSKHNE---RLEFLGDSILSYVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSDIQTVEQLILSWYQSRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222
              G  HD  FT+  ++SGL+ P  G   S+R AEQ AA + LK+
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQALKK 222


>gi|157825292|ref|YP_001493012.1| ribonuclease III [Rickettsia akari str. Hartford]
 gi|189043339|sp|A8GM79|RNC_RICAH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|157799250|gb|ABV74504.1| ribonuclease III [Rickettsia akari str. Hartford]
          Length = 227

 Score =  124 bits (311), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 117/221 (52%), Gaps = 5/221 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61
           + TLEK +GY+F N+ LL +AL+H S+     + Y + YERLEFLGD +L L+++ +LF 
Sbjct: 4   FETLEKLLGYSFKNQELLIEALSHPSLRQHHEYKYDKDYERLEFLGDAVLNLVVTEILFR 63

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +F S  EG L+   + LV  ET   V  +L L  +I ++            +   + +E+
Sbjct: 64  NFASYNEGNLAKIRSYLVCKETICVVGTKLTLKDYIIMTYGEEVAGGRDNPNNIENAMEA 123

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           LIAA+YLD  IE     + K W++          D KT LQEWA A     P Y++  R 
Sbjct: 124 LIAAIYLDSNIETTRNIIGKLWEEFIKIQNLTDYDPKTALQEWAQASSHHLPIYRLIKRE 183

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           G  H   FTV+V++       G   S + AE+ AA ++L R
Sbjct: 184 GAAHSSTFTVLVKVKDYEQT-GTGHSIKEAEKNAARDLLHR 223


>gi|217032489|ref|ZP_03437981.1| hypothetical protein HPB128_156g19 [Helicobacter pylori B128]
 gi|298736360|ref|YP_003728886.1| ribonuclease 3 [Helicobacter pylori B8]
 gi|216945835|gb|EEC24456.1| hypothetical protein HPB128_156g19 [Helicobacter pylori B128]
 gi|298355550|emb|CBI66422.1| ribonuclease 3 [Helicobacter pylori B8]
          Length = 239

 Score =  124 bits (311), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 121/221 (54%), Gaps = 8/221 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y TLEK +GY+F ++ LLE+ALTH S   +     ERLEFLGD +LGL+I  LL++ F  
Sbjct: 18  YLTLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 75

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA   +++A+ + L  ++RVSS           SI +   E+L+A 
Sbjct: 76  YDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRVSSSEEISNGREKPSILSSAFEALMAG 135

Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +YL+ G+    ++    +++ +K+  L+      D KT LQE   A+F V P Y++    
Sbjct: 136 VYLEAGLAKVRKIIQNLLNRAYKRLDLEH--LFMDYKTALQELTQAQFCVIPTYQLLQEK 193

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           GPDH   F + + I     A     SK+ AEQ  A   L++
Sbjct: 194 GPDHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYYALQK 234


>gi|299769157|ref|YP_003731183.1| ribonuclease III [Acinetobacter sp. DR1]
 gi|298699245|gb|ADI89810.1| ribonuclease III [Acinetobacter sp. DR1]
          Length = 230

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/213 (37%), Positives = 117/213 (54%), Gaps = 5/213 (2%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71
           RIGY F    LL+ ALTH S+SH Y  +YERLEFLGD +LG++I+  L++ + +  EG L
Sbjct: 16  RIGYQFKQLELLQLALTHRSVSHKY--NYERLEFLGDSLLGMIIANYLYHAYPNENEGRL 73

Query: 72  SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131
           +    +LV  E   ++A +L L+  + +S+   K       SI AD VE++I A+Y+D G
Sbjct: 74  TRMRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRESILADTVEAIIGAIYIDSG 133

Query: 132 -IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
            + +    V K++      ++     +D K+ LQE+  A+    P Y+V    G      
Sbjct: 134 DLNLLTDIVLKWYVPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQH 193

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           F V   I GL+   G   S+R AEQ AAAE+LK
Sbjct: 194 FKVECLIDGLSKIHGEGSSRRFAEQAAAAEILK 226


>gi|238920905|ref|YP_002934420.1| ribonuclease III [Edwardsiella ictaluri 93-146]
 gi|259491900|sp|C5B8Y2|RNC_EDWI9 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|238870474|gb|ACR70185.1| ribonuclease III, putative [Edwardsiella ictaluri 93-146]
          Length = 226

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/225 (36%), Positives = 122/225 (54%), Gaps = 6/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F    LL +ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFRQHDLLMQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGIFLDSDIQTIERLILDWYRSRLEEISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222
              G  HD  FT+  ++SGL AP  G+  S+R AEQ AA + LK+
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSAPVVGVGSSRRKAEQAAAEQALKQ 222


>gi|242309254|ref|ZP_04808409.1| ribonuclease 3 [Helicobacter pullorum MIT 98-5489]
 gi|239524295|gb|EEQ64161.1| ribonuclease 3 [Helicobacter pullorum MIT 98-5489]
          Length = 224

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 119/223 (53%), Gaps = 7/223 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           + ++  ++ +GY F N++LL++ALTH S   S     ERLEFLGD +L L+I   L+  F
Sbjct: 1   MDFNHFQQTLGYHFKNQNLLKEALTHKSAKKSTHN--ERLEFLGDAVLDLIIGEFLYKKF 58

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            S+ EGELS    S+V+ +  +++AR L +  ++ +S    ++      SI ++  E++I
Sbjct: 59  PSSPEGELSKMRASMVNEKAFAKIARYLGIGEYLFISHSEEQNHGRDKDSILSNAFEAII 118

Query: 124 AALYLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+YL+ G+E     V K  +     +       D KT LQE   A FGV PEY V    
Sbjct: 119 GAIYLESGLEKVQKIVLKILEILYPKIDIQHLFYDHKTSLQELTQALFGVIPEYVVLDSK 178

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA---EVLK 221
           GPDH+  F + V I G   A     SK+ A+Q  A    E+LK
Sbjct: 179 GPDHNKEFLIGVFIQGKEYAHASGKSKKEAQQNCAKIALEILK 221


>gi|261253900|ref|ZP_05946473.1| ribonuclease III [Vibrio orientalis CIP 102891]
 gi|260937291|gb|EEX93280.1| ribonuclease III [Vibrio orientalis CIP 102891]
          Length = 225

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/204 (36%), Positives = 111/204 (54%), Gaps = 6/204 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LEK++GY F +  L+  ALTH S +  + E   RLEFLGD IL  +I+  L++ F    E
Sbjct: 8   LEKKLGYQFNDAELISLALTHRSANGKHNE---RLEFLGDSILSFVIADDLYHRFPKVNE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G++S    +LV   T +++ RE +L   +++     K       SI AD VE++I A+YL
Sbjct: 65  GDMSRMRATLVRGNTLAELGREFELGDHLKLGPGELKSGGFRRDSILADAVEAIIGAIYL 124

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D  IEV    +  ++K R  A+K G  ++D KT LQE+   +    P Y VT   G  H+
Sbjct: 125 DSDIEVVRGIILSWYKTRLDAIKPGVSQKDPKTRLQEFLQGRRKPLPAYTVTNIKGEAHN 184

Query: 187 PRFTVVVEISGLA-PAQGMDCSKR 209
             FTV  E++G+  P  G   S+R
Sbjct: 185 QEFTVSCEVAGIGQPVIGKGTSRR 208


>gi|306819680|ref|ZP_07453341.1| ribonuclease III [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304552246|gb|EFM40176.1| ribonuclease III [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 233

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 120/219 (54%), Gaps = 6/219 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           +E  IGY F N++ L+ ALTHSS    H   +  ERLEFLGD +LGL++S  +F +  S 
Sbjct: 12  VENTIGYKFKNKNYLQIALTHSSYVNEHKLTKDNERLEFLGDSVLGLIVSNYIFAYKSSL 71

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           KEGEL+   +++V  ++   +A +L +  +I++    +    +   SI AD VE++IAA+
Sbjct: 72  KEGELTKIRSTIVCEKSLMHIAEKLKIGQYIKLGKGEKISGGAKRASILADAVEAMIAAI 131

Query: 127 YLDGGIEVAGTFVDKYWKQRALKS---GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           YLD   +    +V   W    +K+    K   D K++LQE      G T +Y++    GP
Sbjct: 132 YLDSDFDNVSKYVLD-WLGDTIKNALDNKKNDDYKSKLQEEVQKVRGRTLKYELIAMKGP 190

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           DH+  FT+ V         G   SK+ AEQ+AA + L++
Sbjct: 191 DHERTFTIGVYCDNKLIGTGKGHSKKEAEQLAAKDALEK 229


>gi|315179118|gb|ADT86032.1| ribonuclease III [Vibrio furnissii NCTC 11218]
          Length = 202

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/200 (38%), Positives = 111/200 (55%), Gaps = 6/200 (3%)

Query: 26  ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85
           ALTH S +  + E   RLEFLGD IL  +I+  L++ F    EG++S    +LV   T +
Sbjct: 2   ALTHRSANGKHNE---RLEFLGDSILSFVIADDLYHRFPKVNEGDMSRMRATLVRGNTLA 58

Query: 86  QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145
           ++ RE DL  ++++     K       SI AD VE++I A+YLD  IEVA   V  +++ 
Sbjct: 59  ELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAIYLDSDIEVARATVLSWYQS 118

Query: 146 R--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQ 202
           R  A+K G  ++D KT LQE+   +    P Y VT   G  H+  FTV  +I+G+ AP  
Sbjct: 119 RLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEAHNQEFTVACDIAGIGAPVI 178

Query: 203 GMDCSKRAAEQVAAAEVLKR 222
           G   S+R AEQ AA   L++
Sbjct: 179 GKGTSRRKAEQAAAETALEQ 198


>gi|242240203|ref|YP_002988384.1| ribonuclease III [Dickeya dadantii Ech703]
 gi|242132260|gb|ACS86562.1| ribonuclease III [Dickeya dadantii Ech703]
          Length = 226

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/225 (36%), Positives = 122/225 (54%), Gaps = 6/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L+K++GY F    LL +ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 1   MNPILINRLQKKLGYTFQQYDLLLQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     + K+++ R  A+  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSDIQAVERLILKWYQSRLDAISPGDKQKDPKTRLQEFLQGRHLPLPTYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222
              G  HD  FT+  ++SG + P  G   S+R AEQ AA + LK+
Sbjct: 178 QVRGEAHDQEFTIHCQVSGFSEPVVGTGSSRRKAEQAAAEQALKK 222


>gi|170754285|ref|YP_001781997.1| ribonuclease III [Clostridium botulinum B1 str. Okra]
 gi|169119497|gb|ACA43333.1| ribonuclease III [Clostridium botulinum B1 str. Okra]
          Length = 234

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/221 (37%), Positives = 122/221 (55%), Gaps = 6/221 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           L+ ++   F N  LL+ ALTHSS ++  +  + YERLEFLGD +L L+IS  L+  ++  
Sbjct: 11  LQYKLKVYFKNEKLLDVALTHSSYANGKRNIKYYERLEFLGDSVLQLIISEHLYQKYEDK 70

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           KEGEL+ +   +V   +  ++A+  DL  ++++S            SI AD VES+IAA+
Sbjct: 71  KEGELTRKRAIIVCENSLYEIAKRWDLGFYLQMSKGEELTGGRERVSILADCVESIIAAI 130

Query: 127 YLDGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           YLD G++ A  FV K +K   ++A+K  +   D KT LQE       +T  Y++  + GP
Sbjct: 131 YLDKGLDHAREFVMKNFKEIIEKAMKD-EIILDYKTTLQEIVQQNNDLTINYELLKQEGP 189

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            H  RF   V I       G+  SK+ AEQ AA E LK  G
Sbjct: 190 PHRRRFFTNVTIDNEVRGTGIGYSKKEAEQNAAREALKNLG 230


>gi|309789990|ref|ZP_07684566.1| ribonuclease III [Oscillochloris trichoides DG6]
 gi|308228010|gb|EFO81662.1| ribonuclease III [Oscillochloris trichoides DG6]
          Length = 235

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 120/222 (54%), Gaps = 8/222 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSY------QESYERLEFLGDRILGLLISTLLFNH 62
           L++++G  F +  L  +A  H S  H +      +ES ERLEFLGD +L  L +  L+ +
Sbjct: 4   LQRQLGIRFNDEELFTRAFVHRSFIHEHPERNRPRESNERLEFLGDAVLNFLSAAWLYAN 63

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EGEL+    +LV   T +  AR LDL   I++S      +     ++ ADV E+L
Sbjct: 64  FPDRTEGELTHLRAALVKTNTLAGFARSLDLGRHIKISRGEDTPIARNRPALLADVFEAL 123

Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           + A+YLD G++   TF+  +++ +   + SG    D +T LQE A ++F  TP Y++   
Sbjct: 124 LGAIYLDQGLDAVRTFITPFFEHQIVVVLSGSDEVDYRTRLQEQAQSRFNRTPTYRMVDV 183

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           SGPDH   FT+ V I  +    G+  SK+AA Q AA E L R
Sbjct: 184 SGPDHQREFTMEVVIDEVRYGVGVGTSKQAAAQAAAREALNR 225


>gi|188527489|ref|YP_001910176.1| ribonuclease III [Helicobacter pylori Shi470]
 gi|238691923|sp|B2UTG4|RNC_HELPS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|188143729|gb|ACD48146.1| ribonuclease III [Helicobacter pylori Shi470]
          Length = 238

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 122/221 (55%), Gaps = 8/221 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y+TLEK +GY+F ++ LLE+ALTH S   +     ERLEFLGD +LGL+I  LL++ F  
Sbjct: 17  YATLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 74

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA   +++A+ + L  ++ +SS           SI +   E+L+A 
Sbjct: 75  YDEGKLSKLRASIVSAHGFTKLAKVIALQDYLHISSSEEISNGREKPSILSSAFEALMAG 134

Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +YL+ G+    ++    +++ +K+  L+      D KT LQE   A+F V P Y++    
Sbjct: 135 VYLEAGLAKVQKIIQNLLNRAYKRLDLEH--LFMDYKTALQELTQAQFCVIPTYQLLKEK 192

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           GPDH   F + + I     A     SK+ AEQ  A + L++
Sbjct: 193 GPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQK 233


>gi|300717987|ref|YP_003742790.1| ribonuclease III [Erwinia billingiae Eb661]
 gi|299063823|emb|CAX60943.1| Ribonuclease III [Erwinia billingiae Eb661]
          Length = 226

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 124/228 (54%), Gaps = 6/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVITRLQRKLGYTFTHQELLQQALTHRSASSKHNE---RLEFLGDSILSYVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  QRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGYRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     + +++  R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSDIQNVEKLILEWYASRLEQISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKREGI 225
              G  HD  FT+  ++SG+A P  G   S+R AEQ AA + L + G+
Sbjct: 178 QVRGEAHDQEFTIHCQVSGMAEPVVGTGSSRRKAEQAAAEQALIKLGL 225


>gi|78485079|ref|YP_391004.1| ribonuclease III [Thiomicrospira crunogena XCL-2]
 gi|78363365|gb|ABB41330.1| RNAse III [Thiomicrospira crunogena XCL-2]
          Length = 233

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 118/219 (53%), Gaps = 6/219 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           + + L K +GY + N   L++ALTH S+     ++ ERLEFLGD ++  +I+  LF+ F 
Sbjct: 9   KLNRLSKSLGYQYKNIEFLQRALTHRSMG---AKNNERLEFLGDSLVNFMIADALFHQFH 65

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+LS     LV  ET +++ +E  L+ ++ +     K       SI AD VE++IA
Sbjct: 66  KISEGDLSRIRAFLVKGETLAKIGKEYQLSDYLMLGPGELKSGGYRRESIIADTVEAIIA 125

Query: 125 ALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           ++Y DGG++    FV + ++ R   L   K  +D KT LQE+  +     PEY V   +G
Sbjct: 126 SVYEDGGLDACRAFVMRLYENRLKELDPSKIGKDPKTRLQEFLQSNREQLPEYSVMTVNG 185

Query: 183 PDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVL 220
           P H   FTV   ++ L    +    ++R AEQVAA E L
Sbjct: 186 PAHAQEFTVSCYVAKLNRKFEATATNRRKAEQVAAQEAL 224


>gi|308184450|ref|YP_003928583.1| ribonuclease III [Helicobacter pylori SJM180]
 gi|308060370|gb|ADO02266.1| ribonuclease III [Helicobacter pylori SJM180]
          Length = 239

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/220 (36%), Positives = 116/220 (52%), Gaps = 6/220 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y TLEK +GY+F ++ LLE+ALTH S   +     ERLEFLGD +LGL+I  LL++ F  
Sbjct: 18  YLTLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 75

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA   +++A+ + L  ++ VSS           SI +   E+L+A 
Sbjct: 76  YDEGKLSKLRASIVSAHGFTKLAKAISLQDYLHVSSSEEISKGREKPSILSSAFEALMAG 135

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +YL+ G+      + K    RA K         D KT LQE   A+F V P Y++    G
Sbjct: 136 VYLEAGLAKVRKIIQKLL-NRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKEKG 194

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           PDH   F + + I     A     SK+ AEQ  A + L++
Sbjct: 195 PDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQK 234


>gi|296120504|ref|YP_003628282.1| ribonuclease III [Planctomyces limnophilus DSM 3776]
 gi|296012844|gb|ADG66083.1| ribonuclease III [Planctomyces limnophilus DSM 3776]
          Length = 263

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/216 (36%), Positives = 117/216 (54%), Gaps = 9/216 (4%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           E R+GY F +  LL +AL+H+S + +  ES ERLEFLGD ILG  +  LLF  +  + EG
Sbjct: 14  EARLGYHFRSPELLMQALSHASAAKTRLESNERLEFLGDAILGAAVCDLLFRKYPKSTEG 73

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC---SFMTSIQADVVESLIAAL 126
           EL+   + +VS   C  +A+EL L  F+ +     K +C   +   SI +   ES+IAA+
Sbjct: 74  ELTRIKSFVVSRHVCGLLAKELHLDQFVIIG----KGLCGTPNVPVSILSATFESVIAAV 129

Query: 127 YLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           +LDGG + A  F+ +  +     +   ++ R+ K+ LQ++A    G TP Y +    GPD
Sbjct: 130 FLDGGFDAAKEFIIRLIEPHVEQMVGAEYGRNYKSVLQQYAQKTLGETPRYDLLKEYGPD 189

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           H   F V   +  +  A     +K+ AEQ AAA  L
Sbjct: 190 HLKYFKVSAALGEVVYAAAWGINKKEAEQKAAANAL 225


>gi|224532223|ref|ZP_03672855.1| ribonuclease III [Borrelia valaisiana VS116]
 gi|224511688|gb|EEF82094.1| ribonuclease III [Borrelia valaisiana VS116]
          Length = 245

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/212 (37%), Positives = 114/212 (53%), Gaps = 9/212 (4%)

Query: 17  FANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           F N  LL  AL+HSS S+   +   + ERLEFLGD +L L+I+  L+  + +  EGELS 
Sbjct: 29  FNNFDLLNTALSHSSYSNELDQKSGNNERLEFLGDSVLNLIITDHLYKTYPNKSEGELSK 88

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
             + +VS ++ S +ARE+DL S+I +      +       I AD +E+ + A+YLD G  
Sbjct: 89  ARSYIVSEDSLSNIAREIDLGSYILLGRGEESNDGRNKKGILADAIEAFVGAIYLDSGFS 148

Query: 134 VAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
           VA  FV    D Y +      G F +D K+ LQE+   K+ ++P YK+    GPDHD  F
Sbjct: 149 VATEFVVGLFDMYIR-LMFNRGDF-KDYKSLLQEYIQKKYKISPSYKLDKEIGPDHDKVF 206

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V + +     + G   SK+ AE  AA   LK
Sbjct: 207 CVELYVGEKFISNGKGKSKKEAEMRAAEVALK 238


>gi|296104242|ref|YP_003614388.1| ribonuclease III [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295058701|gb|ADF63439.1| ribonuclease III [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 239

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 123/224 (54%), Gaps = 6/224 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 14  MNPIVINRLQRKLGYTFHHQELLQQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 70

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 71  HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 130

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 131 ALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 190

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221
              G  HD  FT+  ++SGL+ P  G   S+R AEQ AA + LK
Sbjct: 191 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQALK 234


>gi|170761820|ref|YP_001787766.1| ribonuclease III [Clostridium botulinum A3 str. Loch Maree]
 gi|169408809|gb|ACA57220.1| ribonuclease III [Clostridium botulinum A3 str. Loch Maree]
          Length = 234

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/221 (37%), Positives = 122/221 (55%), Gaps = 6/221 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           L+ ++   F N  LL+ ALTHSS ++  +  + YERLEFLGD +L L+IS  L+  ++  
Sbjct: 11  LQYKLKVYFKNEKLLDVALTHSSYANGKKNIKYYERLEFLGDSVLQLIISEHLYQKYEDK 70

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           KEGEL+ +   +V   +  ++A+  DL  ++++S            SI AD VES+IAA+
Sbjct: 71  KEGELTRKRAIIVCENSLYEIAKRWDLGFYLQMSKGEELTGGRERVSILADCVESIIAAI 130

Query: 127 YLDGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           YLD G++ A  FV K +K   ++A+K  +   D KT LQE       +T  Y++  + GP
Sbjct: 131 YLDKGLDHAREFVMKNFKEIIEKAMKD-EIILDYKTTLQEIVQQNNDLTINYELLKQEGP 189

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            H  RF   V I       G+  SK+ AEQ AA E LK  G
Sbjct: 190 PHRRRFFTNVTIDNEIRGTGIGYSKKEAEQNAAREALKNLG 230


>gi|92113755|ref|YP_573683.1| ribonuclease III [Chromohalobacter salexigens DSM 3043]
 gi|91796845|gb|ABE58984.1| RNAse III [Chromohalobacter salexigens DSM 3043]
          Length = 226

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/216 (38%), Positives = 117/216 (54%), Gaps = 6/216 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L +RIGY F + S LE ALTH S      ++ ERLEFLGD I+  +I   LF  F  A+E
Sbjct: 4   LSRRIGYQFRDTSRLELALTHRSYGG---KNNERLEFLGDSIVNFVIGEALFQRFPQARE 60

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS     LV  +T +++ARE +L   +R+ S   K       SI AD VE+LI A+YL
Sbjct: 61  GQLSRLRARLVKGQTLAELAREFELGECLRLGSGEMKSGGYRRDSILADGVEALIGAIYL 120

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D G++VA   V  ++  R  A+     ++D KT LQE+  ++    P Y+V    G  H 
Sbjct: 121 DAGMDVAKARVLSWYATRLEAIDLQDNQKDPKTRLQEFLQSRQAALPRYEVVSVEGEAHA 180

Query: 187 PRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLK 221
             FT+   +  L     G+  S+R AEQ AA + L+
Sbjct: 181 QVFTIECHVEMLEDHTLGVGSSRRHAEQQAAEKALE 216


>gi|57238646|ref|YP_179777.1| ribonuclease III [Campylobacter jejuni RM1221]
 gi|81353160|sp|Q5HSF8|RNC_CAMJR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|57167450|gb|AAW36229.1| ribonuclease III [Campylobacter jejuni RM1221]
 gi|315059085|gb|ADT73414.1| Ribonuclease III [Campylobacter jejuni subsp. jejuni S3]
          Length = 224

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/220 (34%), Positives = 123/220 (55%), Gaps = 8/220 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE+ + Y F +++LL  ALTH S   SY    ERLEFLGD +L L++   LF+ F    E
Sbjct: 7   LERSLTYEFKDKNLLIHALTHKSFKKSYNN--ERLEFLGDAVLDLVVGEYLFHKFAKDAE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    +LV+ ++ +++A  L+L  FI +S     +      SI +D +E++I A++L
Sbjct: 65  GDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGREKPSILSDALEAIIGAIHL 124

Query: 129 DGGIEVAGT----FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           + G E   T     ++K + Q  + +    +D KT+LQE    K G TP+Y+     GPD
Sbjct: 125 EAGFEFTKTIALRLIEKNFPQ--IDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPD 182

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           H  +F + + + G   A+ +  SK+ A+Q+AA   L++ G
Sbjct: 183 HLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 222


>gi|15803093|ref|NP_289124.1| ribonuclease III [Escherichia coli O157:H7 EDL933]
 gi|15832687|ref|NP_311460.1| ribonuclease III [Escherichia coli O157:H7 str. Sakai]
 gi|16130492|ref|NP_417062.1| RNase III [Escherichia coli str. K-12 substr. MG1655]
 gi|24113909|ref|NP_708419.1| ribonuclease III [Shigella flexneri 2a str. 301]
 gi|26248932|ref|NP_754972.1| ribonuclease III [Escherichia coli CFT073]
 gi|30063969|ref|NP_838140.1| ribonuclease III [Shigella flexneri 2a str. 2457T]
 gi|74313129|ref|YP_311548.1| ribonuclease III [Shigella sonnei Ss046]
 gi|82545019|ref|YP_408966.1| ribonuclease III [Shigella boydii Sb227]
 gi|82777993|ref|YP_404342.1| ribonuclease III [Shigella dysenteriae Sd197]
 gi|89109373|ref|AP_003153.1| RNase III [Escherichia coli str. K-12 substr. W3110]
 gi|91211893|ref|YP_541879.1| ribonuclease III [Escherichia coli UTI89]
 gi|110642729|ref|YP_670459.1| ribonuclease III [Escherichia coli 536]
 gi|110806512|ref|YP_690032.1| ribonuclease III [Shigella flexneri 5 str. 8401]
 gi|117624788|ref|YP_853701.1| ribonuclease III [Escherichia coli APEC O1]
 gi|157157389|ref|YP_001463890.1| ribonuclease III [Escherichia coli E24377A]
 gi|157162046|ref|YP_001459364.1| ribonuclease III [Escherichia coli HS]
 gi|168748363|ref|ZP_02773385.1| ribonuclease III [Escherichia coli O157:H7 str. EC4113]
 gi|168761188|ref|ZP_02786195.1| ribonuclease III [Escherichia coli O157:H7 str. EC4501]
 gi|168778544|ref|ZP_02803551.1| ribonuclease III [Escherichia coli O157:H7 str. EC4076]
 gi|168787927|ref|ZP_02812934.1| ribonuclease III [Escherichia coli O157:H7 str. EC869]
 gi|170019150|ref|YP_001724104.1| ribonuclease III [Escherichia coli ATCC 8739]
 gi|170082176|ref|YP_001731496.1| RNase III [Escherichia coli str. K-12 substr. DH10B]
 gi|170680897|ref|YP_001744756.1| ribonuclease III [Escherichia coli SMS-3-5]
 gi|170767161|ref|ZP_02901614.1| ribonuclease III [Escherichia albertii TW07627]
 gi|187732795|ref|YP_001881346.1| ribonuclease III [Shigella boydii CDC 3083-94]
 gi|187775820|ref|ZP_02992726.1| ribonuclease III [Escherichia coli O157:H7 str. EC4196]
 gi|188492722|ref|ZP_02999992.1| ribonuclease III [Escherichia coli 53638]
 gi|189402493|ref|ZP_03006738.1| ribonuclease III [Escherichia coli O157:H7 str. EC4401]
 gi|189403151|ref|ZP_03006973.1| ribonuclease III [Escherichia coli O157:H7 str. EC4486]
 gi|189405744|ref|ZP_02823956.2| ribonuclease III [Escherichia coli O157:H7 str. EC508]
 gi|191167987|ref|ZP_03029789.1| ribonuclease III [Escherichia coli B7A]
 gi|191174016|ref|ZP_03035533.1| ribonuclease III [Escherichia coli F11]
 gi|193064102|ref|ZP_03045187.1| ribonuclease III [Escherichia coli E22]
 gi|193068346|ref|ZP_03049309.1| ribonuclease III [Escherichia coli E110019]
 gi|194429263|ref|ZP_03061790.1| ribonuclease III [Escherichia coli B171]
 gi|194432095|ref|ZP_03064384.1| ribonuclease III [Shigella dysenteriae 1012]
 gi|194437570|ref|ZP_03069666.1| ribonuclease III [Escherichia coli 101-1]
 gi|195936714|ref|ZP_03082096.1| ribonuclease III [Escherichia coli O157:H7 str. EC4024]
 gi|208807620|ref|ZP_03249957.1| ribonuclease III [Escherichia coli O157:H7 str. EC4206]
 gi|208811958|ref|ZP_03253287.1| ribonuclease III [Escherichia coli O157:H7 str. EC4045]
 gi|208820348|ref|ZP_03260668.1| ribonuclease III [Escherichia coli O157:H7 str. EC4042]
 gi|209400787|ref|YP_002272042.1| ribonuclease III [Escherichia coli O157:H7 str. EC4115]
 gi|209920046|ref|YP_002294130.1| ribonuclease III [Escherichia coli SE11]
 gi|215487911|ref|YP_002330342.1| ribonuclease III [Escherichia coli O127:H6 str. E2348/69]
 gi|217327524|ref|ZP_03443607.1| ribonuclease III [Escherichia coli O157:H7 str. TW14588]
 gi|218547905|ref|YP_002381696.1| ribonuclease III [Escherichia fergusonii ATCC 35469]
 gi|218555148|ref|YP_002388061.1| ribonuclease III [Escherichia coli IAI1]
 gi|218559488|ref|YP_002392401.1| ribonuclease III [Escherichia coli S88]
 gi|218690683|ref|YP_002398895.1| ribonuclease III [Escherichia coli ED1a]
 gi|218696195|ref|YP_002403862.1| ribonuclease III [Escherichia coli 55989]
 gi|218701081|ref|YP_002408710.1| ribonuclease III [Escherichia coli IAI39]
 gi|218706071|ref|YP_002413590.1| ribonuclease III [Escherichia coli UMN026]
 gi|237705077|ref|ZP_04535558.1| ribonuclease III [Escherichia sp. 3_2_53FAA]
 gi|238901732|ref|YP_002927528.1| RNase III [Escherichia coli BW2952]
 gi|253772534|ref|YP_003035365.1| ribonuclease III [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254162542|ref|YP_003045650.1| ribonuclease III [Escherichia coli B str. REL606]
 gi|254794517|ref|YP_003079354.1| ribonuclease III [Escherichia coli O157:H7 str. TW14359]
 gi|256017284|ref|ZP_05431149.1| ribonuclease III [Shigella sp. D9]
 gi|256021747|ref|ZP_05435612.1| ribonuclease III [Escherichia sp. 4_1_40B]
 gi|260845252|ref|YP_003223030.1| RNase III [Escherichia coli O103:H2 str. 12009]
 gi|260856661|ref|YP_003230552.1| RNase III [Escherichia coli O26:H11 str. 11368]
 gi|260869254|ref|YP_003235656.1| RNase III [Escherichia coli O111:H- str. 11128]
 gi|261222997|ref|ZP_05937278.1| RNase III [Escherichia coli O157:H7 str. FRIK2000]
 gi|261259452|ref|ZP_05951985.1| RNase III [Escherichia coli O157:H7 str. FRIK966]
 gi|291283842|ref|YP_003500660.1| Ribonuclease 3 [Escherichia coli O55:H7 str. CB9615]
 gi|297516306|ref|ZP_06934692.1| ribonuclease III [Escherichia coli OP50]
 gi|307139203|ref|ZP_07498559.1| ribonuclease III [Escherichia coli H736]
 gi|307313862|ref|ZP_07593478.1| ribonuclease III [Escherichia coli W]
 gi|309784618|ref|ZP_07679253.1| ribonuclease III [Shigella dysenteriae 1617]
 gi|312965483|ref|ZP_07779715.1| ribonuclease III [Escherichia coli 2362-75]
 gi|312973187|ref|ZP_07787359.1| ribonuclease III [Escherichia coli 1827-70]
 gi|331643191|ref|ZP_08344326.1| ribonuclease III [Escherichia coli H736]
 gi|331648313|ref|ZP_08349402.1| ribonuclease III [Escherichia coli M605]
 gi|331654029|ref|ZP_08355030.1| ribonuclease III [Escherichia coli M718]
 gi|331658711|ref|ZP_08359655.1| ribonuclease III [Escherichia coli TA206]
 gi|331664135|ref|ZP_08365045.1| ribonuclease III [Escherichia coli TA143]
 gi|331669317|ref|ZP_08370165.1| ribonuclease III [Escherichia coli TA271]
 gi|331674016|ref|ZP_08374779.1| ribonuclease III [Escherichia coli TA280]
 gi|331678563|ref|ZP_08379238.1| ribonuclease III [Escherichia coli H591]
 gi|331684217|ref|ZP_08384813.1| ribonuclease III [Escherichia coli H299]
 gi|332278275|ref|ZP_08390688.1| ribonuclease III [Shigella sp. D9]
 gi|67472282|sp|P0A7Y0|RNC_ECOLI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|67472283|sp|P0A7Y1|RNC_ECOL6 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|67472284|sp|P0A7Y2|RNC_ECO57 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|67472285|sp|P0A7Y3|RNC_SHIFL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|90101643|sp|Q31XS0|RNC_SHIBS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|90101644|sp|Q32CV4|RNC_SHIDS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|90101645|sp|Q3YYU9|RNC_SHISS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|122422869|sp|Q1R8G6|RNC_ECOUT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|122958122|sp|Q0TES1|RNC_ECOL5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|123048003|sp|Q0T1T8|RNC_SHIF8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043309|sp|A7ZQ11|RNC_ECO24 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043310|sp|A8A377|RNC_ECOHS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043311|sp|A1AE97|RNC_ECOK1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043312|sp|B1IVR0|RNC_ECOLC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226735371|sp|B7MIQ2|RNC_ECO45 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226735372|sp|B7NRM0|RNC_ECO7I RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226735373|sp|B7M8I0|RNC_ECO8A RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226735374|sp|B7N6F5|RNC_ECOLU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226735375|sp|B1LP80|RNC_ECOSM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226735376|sp|B7LUZ7|RNC_ESCF3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226741369|sp|B5Z141|RNC_ECO5E RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226741370|sp|B6I5E1|RNC_ECOSE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|229564359|sp|B1XB41|RNC_ECODH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|238691723|sp|B2TXY0|RNC_SHIB3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807247|sp|B7UH07|RNC_ECO27 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807248|sp|B7LDG0|RNC_ECO55 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807249|sp|B7MYJ8|RNC_ECO81 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|259491899|sp|C4ZYJ0|RNC_ECOBW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|12516984|gb|AAG57682.1|AE005487_6 RNase III, ds RNA [Escherichia coli O157:H7 str. EDL933]
 gi|26109338|gb|AAN81540.1|AE016764_222 Ribonuclease III [Escherichia coli CFT073]
 gi|42769|emb|CAA26692.1| unnamed protein product [Escherichia coli]
 gi|987642|dbj|BAA10914.1| ribonuclease III [Escherichia coli K-12]
 gi|1033156|gb|AAA79829.1| RNase III [Escherichia coli str. K-12 substr. MG1655]
 gi|1788920|gb|AAC75620.1| RNase III [Escherichia coli str. K-12 substr. MG1655]
 gi|13362904|dbj|BAB36856.1| RNase III [Escherichia coli O157:H7 str. Sakai]
 gi|24053010|gb|AAN44126.1| RNase III [Shigella flexneri 2a str. 301]
 gi|30042225|gb|AAP17950.1| RNase III [Shigella flexneri 2a str. 2457T]
 gi|73856606|gb|AAZ89313.1| RNase III [Shigella sonnei Ss046]
 gi|81242141|gb|ABB62851.1| RNase III, ds RNA [Shigella dysenteriae Sd197]
 gi|81246430|gb|ABB67138.1| RNase III [Shigella boydii Sb227]
 gi|85675458|dbj|BAE76743.1| RNase III [Escherichia coli str. K12 substr. W3110]
 gi|91073467|gb|ABE08348.1| RNase III, ds RNA [Escherichia coli UTI89]
 gi|110344321|gb|ABG70558.1| ribonuclease III [Escherichia coli 536]
 gi|110616060|gb|ABF04727.1| RNase III, ds RNA [Shigella flexneri 5 str. 8401]
 gi|115513912|gb|ABJ01987.1| RNase III [Escherichia coli APEC O1]
 gi|157067726|gb|ABV06981.1| ribonuclease III [Escherichia coli HS]
 gi|157079419|gb|ABV19127.1| ribonuclease III [Escherichia coli E24377A]
 gi|169754078|gb|ACA76777.1| Ribonuclease III [Escherichia coli ATCC 8739]
 gi|169890011|gb|ACB03718.1| RNase III [Escherichia coli str. K-12 substr. DH10B]
 gi|170123495|gb|EDS92426.1| ribonuclease III [Escherichia albertii TW07627]
 gi|170518615|gb|ACB16793.1| ribonuclease III [Escherichia coli SMS-3-5]
 gi|187429787|gb|ACD09061.1| ribonuclease III [Shigella boydii CDC 3083-94]
 gi|187770609|gb|EDU34453.1| ribonuclease III [Escherichia coli O157:H7 str. EC4196]
 gi|188017132|gb|EDU55254.1| ribonuclease III [Escherichia coli O157:H7 str. EC4113]
 gi|188487921|gb|EDU63024.1| ribonuclease III [Escherichia coli 53638]
 gi|189003491|gb|EDU72477.1| ribonuclease III [Escherichia coli O157:H7 str. EC4076]
 gi|189355317|gb|EDU73736.1| ribonuclease III [Escherichia coli O157:H7 str. EC4401]
 gi|189362280|gb|EDU80699.1| ribonuclease III [Escherichia coli O157:H7 str. EC4486]
 gi|189368381|gb|EDU86797.1| ribonuclease III [Escherichia coli O157:H7 str. EC4501]
 gi|189372250|gb|EDU90666.1| ribonuclease III [Escherichia coli O157:H7 str. EC869]
 gi|189378654|gb|EDU97070.1| ribonuclease III [Escherichia coli O157:H7 str. EC508]
 gi|190901994|gb|EDV61741.1| ribonuclease III [Escherichia coli B7A]
 gi|190905707|gb|EDV65329.1| ribonuclease III [Escherichia coli F11]
 gi|192929337|gb|EDV82946.1| ribonuclease III [Escherichia coli E22]
 gi|192958298|gb|EDV88738.1| ribonuclease III [Escherichia coli E110019]
 gi|194412671|gb|EDX28966.1| ribonuclease III [Escherichia coli B171]
 gi|194419624|gb|EDX35704.1| ribonuclease III [Shigella dysenteriae 1012]
 gi|194423376|gb|EDX39367.1| ribonuclease III [Escherichia coli 101-1]
 gi|208727421|gb|EDZ77022.1| ribonuclease III [Escherichia coli O157:H7 str. EC4206]
 gi|208733235|gb|EDZ81922.1| ribonuclease III [Escherichia coli O157:H7 str. EC4045]
 gi|208740471|gb|EDZ88153.1| ribonuclease III [Escherichia coli O157:H7 str. EC4042]
 gi|209162187|gb|ACI39620.1| ribonuclease III [Escherichia coli O157:H7 str. EC4115]
 gi|209762878|gb|ACI79751.1| RNase III [Escherichia coli]
 gi|209762880|gb|ACI79752.1| RNase III [Escherichia coli]
 gi|209762882|gb|ACI79753.1| RNase III [Escherichia coli]
 gi|209762884|gb|ACI79754.1| RNase III [Escherichia coli]
 gi|209762886|gb|ACI79755.1| RNase III [Escherichia coli]
 gi|209913305|dbj|BAG78379.1| ribonuclease III [Escherichia coli SE11]
 gi|215265983|emb|CAS10392.1| RNase III [Escherichia coli O127:H6 str. E2348/69]
 gi|217319891|gb|EEC28316.1| ribonuclease III [Escherichia coli O157:H7 str. TW14588]
 gi|218352927|emb|CAU98726.1| RNase III [Escherichia coli 55989]
 gi|218355446|emb|CAQ88055.1| RNase III [Escherichia fergusonii ATCC 35469]
 gi|218361916|emb|CAQ99516.1| RNase III [Escherichia coli IAI1]
 gi|218366257|emb|CAR04004.1| RNase III [Escherichia coli S88]
 gi|218371067|emb|CAR18894.1| RNase III [Escherichia coli IAI39]
 gi|218428247|emb|CAR09164.2| RNase III [Escherichia coli ED1a]
 gi|218433168|emb|CAR14064.1| RNase III [Escherichia coli UMN026]
 gi|222034272|emb|CAP77013.1| ribonuclease 3 [Escherichia coli LF82]
 gi|226901443|gb|EEH87702.1| ribonuclease III [Escherichia sp. 3_2_53FAA]
 gi|238863504|gb|ACR65502.1| RNase III [Escherichia coli BW2952]
 gi|242378168|emb|CAQ32942.1| RNase III [Escherichia coli BL21(DE3)]
 gi|253323578|gb|ACT28180.1| ribonuclease III [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253974443|gb|ACT40114.1| ribonuclease III [Escherichia coli B str. REL606]
 gi|253978610|gb|ACT44280.1| ribonuclease III [Escherichia coli BL21(DE3)]
 gi|254593917|gb|ACT73278.1| RNase III [Escherichia coli O157:H7 str. TW14359]
 gi|257755310|dbj|BAI26812.1| RNase III [Escherichia coli O26:H11 str. 11368]
 gi|257760399|dbj|BAI31896.1| RNase III [Escherichia coli O103:H2 str. 12009]
 gi|257765610|dbj|BAI37105.1| RNase III [Escherichia coli O111:H- str. 11128]
 gi|260448353|gb|ACX38775.1| Ribonuclease III [Escherichia coli DH1]
 gi|281179616|dbj|BAI55946.1| ribonuclease III [Escherichia coli SE15]
 gi|281601980|gb|ADA74964.1| Ribonuclease 3 [Shigella flexneri 2002017]
 gi|284922517|emb|CBG35604.1| Ribonuclease III [Escherichia coli 042]
 gi|290763715|gb|ADD57676.1| Ribonuclease 3 [Escherichia coli O55:H7 str. CB9615]
 gi|294490667|gb|ADE89423.1| ribonuclease III [Escherichia coli IHE3034]
 gi|306906363|gb|EFN36878.1| ribonuclease III [Escherichia coli W]
 gi|307554586|gb|ADN47361.1| ribonuclease III [Escherichia coli ABU 83972]
 gi|307625885|gb|ADN70189.1| ribonuclease III [Escherichia coli UM146]
 gi|308927515|gb|EFP72987.1| ribonuclease III [Shigella dysenteriae 1617]
 gi|309702953|emb|CBJ02284.1| Ribonuclease III [Escherichia coli ETEC H10407]
 gi|310331782|gb|EFP99017.1| ribonuclease III [Escherichia coli 1827-70]
 gi|312289903|gb|EFR17791.1| ribonuclease III [Escherichia coli 2362-75]
 gi|312947138|gb|ADR27965.1| ribonuclease III [Escherichia coli O83:H1 str. NRG 857C]
 gi|315061886|gb|ADT76213.1| RNase III [Escherichia coli W]
 gi|315137191|dbj|BAJ44350.1| RNase III [Escherichia coli DH1]
 gi|315615829|gb|EFU96461.1| ribonuclease III [Escherichia coli 3431]
 gi|320182108|gb|EFW57012.1| Ribonuclease III [Shigella boydii ATCC 9905]
 gi|320186366|gb|EFW61100.1| Ribonuclease III [Shigella flexneri CDC 796-83]
 gi|320188908|gb|EFW63567.1| Ribonuclease III [Escherichia coli O157:H7 str. EC1212]
 gi|320196403|gb|EFW71027.1| Ribonuclease III [Escherichia coli WV_060327]
 gi|320200131|gb|EFW74720.1| Ribonuclease III [Escherichia coli EC4100B]
 gi|320640816|gb|EFX10310.1| ribonuclease III [Escherichia coli O157:H7 str. G5101]
 gi|320646162|gb|EFX15102.1| ribonuclease III [Escherichia coli O157:H- str. 493-89]
 gi|320651457|gb|EFX19853.1| ribonuclease III [Escherichia coli O157:H- str. H 2687]
 gi|320657058|gb|EFX24877.1| ribonuclease III [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320667543|gb|EFX34463.1| ribonuclease III [Escherichia coli O157:H7 str. LSU-61]
 gi|323159224|gb|EFZ45214.1| ribonuclease III [Escherichia coli E128010]
 gi|323167799|gb|EFZ53494.1| ribonuclease III [Shigella sonnei 53G]
 gi|323184553|gb|EFZ69927.1| ribonuclease III [Escherichia coli 1357]
 gi|323188318|gb|EFZ73610.1| ribonuclease III [Escherichia coli RN587/1]
 gi|323377533|gb|ADX49801.1| ribonuclease III [Escherichia coli KO11]
 gi|323936307|gb|EGB32598.1| ribonuclease III [Escherichia coli E1520]
 gi|323941170|gb|EGB37355.1| ribonuclease III [Escherichia coli E482]
 gi|323944624|gb|EGB40692.1| ribonuclease III [Escherichia coli H120]
 gi|323949221|gb|EGB45112.1| ribonuclease III [Escherichia coli H252]
 gi|323955803|gb|EGB51561.1| ribonuclease III [Escherichia coli H263]
 gi|323961182|gb|EGB56795.1| ribonuclease III [Escherichia coli H489]
 gi|323968015|gb|EGB63427.1| ribonuclease III [Escherichia coli M863]
 gi|323971107|gb|EGB66354.1| ribonuclease III [Escherichia coli TA007]
 gi|323978403|gb|EGB73488.1| ribonuclease III [Escherichia coli TW10509]
 gi|324113094|gb|EGC07070.1| ribonuclease III [Escherichia fergusonii B253]
 gi|324118223|gb|EGC12119.1| ribonuclease III [Escherichia coli E1167]
 gi|325496353|gb|EGC94212.1| ribonuclease III [Escherichia fergusonii ECD227]
 gi|326340373|gb|EGD64177.1| Ribonuclease III [Escherichia coli O157:H7 str. 1125]
 gi|327252277|gb|EGE63949.1| ribonuclease III [Escherichia coli STEC_7v]
 gi|330912336|gb|EGH40846.1| ribonuclease 3 [Escherichia coli AA86]
 gi|331039989|gb|EGI12209.1| ribonuclease III [Escherichia coli H736]
 gi|331042862|gb|EGI15003.1| ribonuclease III [Escherichia coli M605]
 gi|331048878|gb|EGI20954.1| ribonuclease III [Escherichia coli M718]
 gi|331054376|gb|EGI26403.1| ribonuclease III [Escherichia coli TA206]
 gi|331059934|gb|EGI31911.1| ribonuclease III [Escherichia coli TA143]
 gi|331064511|gb|EGI36422.1| ribonuclease III [Escherichia coli TA271]
 gi|331069289|gb|EGI40681.1| ribonuclease III [Escherichia coli TA280]
 gi|331075023|gb|EGI46343.1| ribonuclease III [Escherichia coli H591]
 gi|331079169|gb|EGI50371.1| ribonuclease III [Escherichia coli H299]
 gi|332088079|gb|EGI93204.1| ribonuclease III [Shigella boydii 5216-82]
 gi|332089189|gb|EGI94296.1| ribonuclease III [Shigella dysenteriae 155-74]
 gi|332100627|gb|EGJ03973.1| ribonuclease III [Shigella sp. D9]
 gi|332344442|gb|AEE57776.1| ribonuclease III [Escherichia coli UMNK88]
 gi|332753976|gb|EGJ84350.1| ribonuclease III [Shigella flexneri 4343-70]
 gi|332755808|gb|EGJ86166.1| ribonuclease III [Shigella flexneri 2747-71]
 gi|332761960|gb|EGJ92233.1| ribonuclease III [Shigella flexneri K-671]
 gi|332766568|gb|EGJ96773.1| ribonuclease III [Shigella flexneri 2930-71]
          Length = 226

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 124/225 (55%), Gaps = 6/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKHNE---RLEFLGDSILSYVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPTYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222
              G  HD  FT+  ++SGL+ P  G   S+R AEQ AA + LK+
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQALKK 222


>gi|152978261|ref|YP_001343890.1| ribonuclease III [Actinobacillus succinogenes 130Z]
 gi|189043288|sp|A6VLV8|RNC_ACTSZ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|150839984|gb|ABR73955.1| Ribonuclease III [Actinobacillus succinogenes 130Z]
          Length = 224

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/216 (37%), Positives = 119/216 (55%), Gaps = 6/216 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L+ +IGY F+N +LL++ALTH S +  + E   RLEFLGD IL L I   L+  F    E
Sbjct: 7   LQHKIGYEFSNLTLLKQALTHRSAAKVHNE---RLEFLGDAILNLTIGEALYLQFPHCNE 63

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELS    +LV  +T +++A + DL +++ + +   K       SI AD VE++I A+ L
Sbjct: 64  GELSRMRATLVREKTLAELAHQFDLGNYMALGAGELKSGGFRRASILADCVEAIIGAMSL 123

Query: 129 DGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D  +      V ++++   R ++ G+ ++D KT LQE+   K    P Y VT   G  H 
Sbjct: 124 DSNLPKTMEIVRRWYEVLLRDIQPGENQKDPKTRLQEYLQGKRLALPAYNVTDIQGEAHC 183

Query: 187 PRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLK 221
             FTV   +  L     G+  S+R AEQVAA ++LK
Sbjct: 184 QTFTVECHVENLDRTFVGVAGSRRKAEQVAAEQILK 219


>gi|261839511|gb|ACX99276.1| ribonuclease III [Helicobacter pylori 52]
          Length = 239

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 122/221 (55%), Gaps = 8/221 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y TLEK +GY+F ++ LLE+ALTH S   +     ERLEFLGD +LGL+I  LL++ F  
Sbjct: 18  YITLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 75

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    ++VSA   +++A+ + L  ++RVSS           SI +   E+L+A 
Sbjct: 76  YDEGKLSKLRAAIVSAHGFTKLAKIIALQDYLRVSSSEEISNGREKPSILSSAFEALMAG 135

Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +YL+ G+    ++    +++ +K+  L+      D KT LQE   A+F V P Y++    
Sbjct: 136 VYLEAGLAKVRKIIQNLLNRAYKRLDLEH--LFMDYKTALQELTQAQFCVIPTYQLLKEK 193

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           GPDH   F + + I     A     SK+ AEQ  A + L++
Sbjct: 194 GPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQK 234


>gi|119953483|ref|YP_945692.1| ribonuclease III [Borrelia turicatae 91E135]
 gi|119862254|gb|AAX18022.1| ribonuclease III [Borrelia turicatae 91E135]
          Length = 244

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/212 (34%), Positives = 116/212 (54%), Gaps = 7/212 (3%)

Query: 17  FANRSLLEKALTHSSISHSYQESY---ERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           F +  LL  +L+HSS ++ + + Y   ERLEFLGD +L L+I+  L+  +    EGELS 
Sbjct: 28  FNDIDLLNMSLSHSSYANEFDQKYANNERLEFLGDSVLNLIITDYLYRFYPEKSEGELSK 87

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
             + +VS E+ S +AREL+L ++I +      +       I AD +E+ + ALYLDGG  
Sbjct: 88  ARSYIVSEESLSSIARELNLGNYILLGRGEENNDGRNKKGILADAIEAFVGALYLDGGFL 147

Query: 134 VAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
               FV + ++   +     G F +D K+ LQE+   K+ ++P YK+    GPDH+  F 
Sbjct: 148 KTLDFVIELFEVHIRLMFNRGDF-KDYKSLLQEYVQKKYKISPTYKLAKELGPDHNKVFC 206

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           V + ++    + G   SK+ AE +AA   LK 
Sbjct: 207 VELYVNDKFISNGKGKSKKEAEMIAAEMALKN 238


>gi|15606266|ref|NP_213645.1| RNase III [Aquifex aeolicus VF5]
 gi|7531189|sp|O67082|RNC_AQUAE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|83753752|pdb|1YYK|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
           Complexed With Double-Stranded Rna At 2.5-Angstrom
           Resolution
 gi|83753753|pdb|1YYK|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
           Complexed With Double-Stranded Rna At 2.5-Angstrom
           Resolution
 gi|83753764|pdb|1YYW|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
           Complexed With Double Stranded Rna At 2.8-Angstrom
           Resolution
 gi|83753765|pdb|1YYW|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
           Complexed With Double Stranded Rna At 2.8-Angstrom
           Resolution
 gi|83753766|pdb|1YYW|C Chain C, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
           Complexed With Double Stranded Rna At 2.8-Angstrom
           Resolution
 gi|83753767|pdb|1YYW|D Chain D, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
           Complexed With Double Stranded Rna At 2.8-Angstrom
           Resolution
 gi|160877674|pdb|2NUE|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
           Complexed With Ds-Rna At 2.9-Angstrom Resolution
 gi|160877675|pdb|2NUE|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
           Complexed With Ds-Rna At 2.9-Angstrom Resolution
 gi|160877678|pdb|2NUF|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
           Complexed With Ds-Rna At 2.5-Angstrom Resolution
 gi|160877679|pdb|2NUF|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
           Complexed With Ds-Rna At 2.5-Angstrom Resolution
 gi|160877684|pdb|2NUG|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
           Complexed With Ds-Rna At 1.7-Angstrom Resolution
 gi|160877685|pdb|2NUG|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
           Complexed With Ds-Rna At 1.7-Angstrom Resolution
 gi|2983469|gb|AAC07049.1| RNase III [Aquifex aeolicus VF5]
          Length = 221

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/218 (38%), Positives = 122/218 (55%), Gaps = 14/218 (6%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LEK++GY F ++SLLEKALTH  +S+S +E YE LEFLGD ++   I  LL  +  + +E
Sbjct: 7   LEKKLGYTFKDKSLLEKALTH--VSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKRE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G LS     L+S E  + +A++L+L  FIR+             +I  DV E+L AA+Y+
Sbjct: 65  GFLSPLKAYLISEEFFNLLAQKLELHKFIRIKR------GKINETIIGDVFEALWAAVYI 118

Query: 129 DGGIEVAGT--FVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           D G +   T     K +K+    A+K G+ ++D KT LQE    ++   PEY++    GP
Sbjct: 119 DSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISVEGP 178

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            H  +F V  +I       G   SK+ AEQ AA E++K
Sbjct: 179 HHKKKFIVEAKIKEYRTL-GEGKSKKEAEQRAAEELIK 215


>gi|146312695|ref|YP_001177769.1| ribonuclease III [Enterobacter sp. 638]
 gi|189043313|sp|A4WDD8|RNC_ENT38 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|145319571|gb|ABP61718.1| RNAse III [Enterobacter sp. 638]
          Length = 226

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 122/224 (54%), Gaps = 6/224 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F +  LL++ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFQHHELLQQALTHRSASSKHNE---RLEFLGDSILSYVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSDIQTVEQLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221
              G  HD  FT+  ++SGL+ P  G   S+R AEQ AA + LK
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQALK 221


>gi|126698844|ref|YP_001087741.1| ribonuclease III [Clostridium difficile 630]
 gi|254974792|ref|ZP_05271264.1| ribonuclease III [Clostridium difficile QCD-66c26]
 gi|255092180|ref|ZP_05321658.1| ribonuclease III [Clostridium difficile CIP 107932]
 gi|255100264|ref|ZP_05329241.1| ribonuclease III [Clostridium difficile QCD-63q42]
 gi|255306204|ref|ZP_05350376.1| ribonuclease III [Clostridium difficile ATCC 43255]
 gi|255313919|ref|ZP_05355502.1| ribonuclease III [Clostridium difficile QCD-76w55]
 gi|255516598|ref|ZP_05384274.1| ribonuclease III [Clostridium difficile QCD-97b34]
 gi|255649698|ref|ZP_05396600.1| ribonuclease III [Clostridium difficile QCD-37x79]
 gi|260682854|ref|YP_003214139.1| ribonuclease III [Clostridium difficile CD196]
 gi|260686452|ref|YP_003217585.1| ribonuclease III [Clostridium difficile R20291]
 gi|306519814|ref|ZP_07406161.1| ribonuclease III [Clostridium difficile QCD-32g58]
 gi|115250281|emb|CAJ68103.1| ribonuclease III [Clostridium difficile]
 gi|260209017|emb|CBA62108.1| putative ribonuclease III [Clostridium difficile CD196]
 gi|260212468|emb|CBE03371.1| putative ribonuclease III [Clostridium difficile R20291]
          Length = 236

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 119/222 (53%), Gaps = 5/222 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLISTLLFNHFDSA 66
            E  I Y F N+  + +ALTHSS S+  ++    ERLEFLGD +LG++IS  LFN   + 
Sbjct: 14  FENVINYKFKNKEYILEALTHSSYSNENKKYNFNERLEFLGDSVLGIVISDYLFNEEANL 73

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGEL+    ++V  ++ S+VA +++L   + +            TSI AD  E++IAA+
Sbjct: 74  PEGELTKLRANIVCEDSLSEVANDINLGIHMLLGRGEEATGGRHRTSILADAFEAVIAAI 133

Query: 127 YLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLDGG E A  F+  + +     S  G   RD KT LQE           Y++    GPD
Sbjct: 134 YLDGGFESARQFILHHMENIIYDSRKGNIFRDYKTHLQEVLQGNGENNIWYRLIEEKGPD 193

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           H+ RF + V I+      G   SK+ AEQ+AA   LK++ +W
Sbjct: 194 HNKRFVMEVGINDDVLGIGEGKSKKEAEQLAAKIALKKK-LW 234


>gi|116327694|ref|YP_797414.1| ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|122284510|sp|Q053L4|RNC_LEPBL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|116120438|gb|ABJ78481.1| Ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
          Length = 247

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 113/222 (50%), Gaps = 5/222 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNH 62
           +  L K+IG  F+       A  HSS  +   E     ERLEFLGD +LGL+ +  LF  
Sbjct: 21  FKKLSKKIGIKFSKIEYYNTAFIHSSYKNENPEILEDNERLEFLGDSVLGLVAARSLFQK 80

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +  A EGELS   + +VS    + +A +L+L  ++ +    +         I A++ ESL
Sbjct: 81  YPKASEGELSRIKSKIVSTPILNSIAEKLNLGEYLLLGKGEKNSQGKGRRKIAANLFESL 140

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           + A+YLD G EVA  F+ ++  + A      +  RD KT+LQE++   F   P Y++   
Sbjct: 141 VGAIYLDRGFEVAEKFIVQHLLEFAENPDMEESVRDYKTQLQEYSQKHFKTLPVYRMKGE 200

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           SGPDH   F V V I     A G   SK+ AEQ AA E+  R
Sbjct: 201 SGPDHSKMFQVSVRIRDQWEASGYGASKKIAEQNAAKELYIR 242


>gi|311898536|dbj|BAJ30944.1| putative ribonuclease 3 [Kitasatospora setae KM-6054]
          Length = 269

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/215 (38%), Positives = 116/215 (53%), Gaps = 6/215 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
           Y  LE R+GY+   R+LL +ALTH S ++      + ERLEFLGD +LGL+++  L+   
Sbjct: 28  YDVLEGRLGYSL-ERALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRLH 86

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG L+    ++V++   ++V R LDL +FIR+            +SI AD VE++I
Sbjct: 87  PEVAEGTLAKLRAAVVNSRALAEVGRGLDLGAFIRLGKGEEGTGGRDKSSILADTVEAVI 146

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRS 181
            A YLD G++ A  FV + +     +S +     D KT LQE   A     PEY VT  S
Sbjct: 147 GATYLDQGLDAATEFVHRLFDPLIAESAQLGAGLDWKTSLQELTAAVGLGVPEYVVT-ES 205

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           GPDH+  FT    ++G     G   SK+ AEQ AA
Sbjct: 206 GPDHEKTFTAAARVAGQDHGSGSGRSKKEAEQKAA 240


>gi|216263528|ref|ZP_03435523.1| ribonuclease III [Borrelia afzelii ACA-1]
 gi|215980372|gb|EEC21193.1| ribonuclease III [Borrelia afzelii ACA-1]
          Length = 245

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/212 (36%), Positives = 114/212 (53%), Gaps = 9/212 (4%)

Query: 17  FANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           F N  LL  AL+HSS S+   +   + ERLEFLGD +L L+I+  L+  + +  EGELS 
Sbjct: 29  FNNFDLLNTALSHSSYSNELDQKSDNNERLEFLGDSVLNLIITDHLYKTYPNKSEGELSK 88

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
             + +VS ++ S +ARE+DL S+I +      +       I AD +E+ + A+YLD G  
Sbjct: 89  ARSYIVSEDSLSSIAREIDLGSYILLGRGEESNDGRNKKGILADAIEAFVGAIYLDSGFS 148

Query: 134 VAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
           +A  FV    D Y +      G F +D K+ LQE+   K+ ++P YK+    GPDHD  F
Sbjct: 149 IATEFVVGLFDMYIR-LMFNRGDF-KDYKSLLQEYVQKKYKISPNYKLDKEIGPDHDKVF 206

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V + +     + G   SK+ AE  AA   LK
Sbjct: 207 CVELYVGEKFISNGKGKSKKEAEMRAAEVALK 238


>gi|116331646|ref|YP_801364.1| ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|122280610|sp|Q04R64|RNC_LEPBJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|116125335|gb|ABJ76606.1| Ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 247

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 113/222 (50%), Gaps = 5/222 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNH 62
           +  L K+IG  F+       A  HSS  +   E     ERLEFLGD +LGL+ +  LF  
Sbjct: 21  FKKLSKKIGIKFSKIEYYNTAFIHSSYKNENPEILEDNERLEFLGDSVLGLVAARSLFQK 80

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +  A EGELS   + +VS    + +A +L+L  ++ +    +         I A++ ESL
Sbjct: 81  YPKASEGELSRIKSKIVSTPILNSIAEKLNLGEYLLLGKGEKNSQGKGRRKIAANLFESL 140

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           + A+YLD G EVA  F+ ++  + A      +  RD KT+LQE++   F   P Y++   
Sbjct: 141 VGAIYLDRGFEVAEKFIVQHLLEFAENPDMEESVRDYKTQLQEYSQKHFKTLPVYRMKGE 200

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           SGPDH   F V V I     A G   SK+ AEQ AA E+  R
Sbjct: 201 SGPDHSKTFQVSVRIRDQWEASGYGASKKIAEQNAAKELYIR 242


>gi|52842090|ref|YP_095889.1| ribonuclease III [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|81377263|sp|Q5ZUD5|RNC_LEGPH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|52629201|gb|AAU27942.1| ribonuclease III [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 224

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/217 (36%), Positives = 120/217 (55%), Gaps = 6/217 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L +R+ Y F N + L++ALTH S      ++YER EFLGD IL  +I+  LFN F    E
Sbjct: 8   LCRRLNYHFNNIAYLKQALTHCSAG---SDNYERFEFLGDSILSFVIANELFNRFPLHSE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS   + LV  E  +++ARE+DL  ++ +     +      TSI AD +E+++AA+YL
Sbjct: 65  GQLSRLRSFLVKGEMLAEIAREIDLGDYLFLGQGELRSGGFRRTSILADALEAILAAIYL 124

Query: 129 DGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           DGG+  A   +   +  R          +DAKT+LQE+  A     PEY +T   G +H 
Sbjct: 125 DGGMIAAKQIILMLYSSRLDDPDLNHCLKDAKTQLQEFLQASKFALPEYVLTKIEGDEHA 184

Query: 187 PRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKR 222
             F V   I G++  A G   ++R AEQ+AA  +L++
Sbjct: 185 QIFHVTCTIEGVSQVAYGTGPNRRKAEQLAAKAMLEQ 221


>gi|317178975|dbj|BAJ56763.1| ribonuclease III [Helicobacter pylori F30]
          Length = 232

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 121/221 (54%), Gaps = 8/221 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y TLEK +GY+F ++ LLE+ALTH S   +     ERLEFLGD +LGL+I  LL++ F  
Sbjct: 11  YITLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 68

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VS    +++A+ + L  ++RVSS           SI +   E+L+A 
Sbjct: 69  YDEGKLSKLRASIVSTHGFTKLAKVIALQDYLRVSSSEEISKGREKPSILSSAFEALMAG 128

Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +YL+ G+    ++    +++ +K+  L+      D KT LQE   A+F V P Y++    
Sbjct: 129 VYLEAGLAKVRKIIQNLLNRAYKRLDLEH--LFMDYKTALQELTQAQFCVIPTYQLLKEK 186

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           GPDH   F + + I     A     SK+ AEQ  A + L++
Sbjct: 187 GPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQK 227


>gi|313673188|ref|YP_004051299.1| rnase iii [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939944|gb|ADR19136.1| RNAse III [Calditerrivibrio nitroreducens DSM 19672]
          Length = 229

 Score =  123 bits (309), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/218 (37%), Positives = 115/218 (52%), Gaps = 16/218 (7%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           L + + Y F N+ LL +ALTHSS S+  +   +YERLEFLGD +L L++S  L   +   
Sbjct: 6   LNEILNYNFENKELLIEALTHSSYSYENKLCRNYERLEFLGDAVLQLIVSEYLIFKYKDF 65

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG LS      VS E  S++A+++DL +FIR+             SI  D+ ES++AA+
Sbjct: 66  DEGMLSRYRAYFVSEEFISELAKQIDLGNFIRLGKGELNSGGKDRPSILCDIFESIVAAM 125

Query: 127 YLDGG--------IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           YLDGG        I +A   +D+  +Q          D K+ELQ+     F   P+YKV 
Sbjct: 126 YLDGGYNEARRFIITIASDKIDEVIQQNIFT------DYKSELQKLTQKIFESLPDYKVK 179

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             +GP+HD  F V + I+      G   SK+ AEQ AA
Sbjct: 180 DETGPEHDKTFIVDLYINDRYYCSGSGKSKKKAEQDAA 217


>gi|307637352|gb|ADN79802.1| Ribonuclease III [Helicobacter pylori 908]
 gi|325995944|gb|ADZ51349.1| Ribonuclease III [Helicobacter pylori 2018]
 gi|325997538|gb|ADZ49746.1| Ribonuclease III [Helicobacter pylori 2017]
          Length = 239

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/220 (36%), Positives = 116/220 (52%), Gaps = 6/220 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y TLEK +GY+F ++ LLE+ALTH S   +     ERLEFLGD +LGL+I  LL++ F  
Sbjct: 18  YLTLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 75

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA   +++A+ + L  ++ VSS           SI +   E+L+A 
Sbjct: 76  YDEGKLSKLRASIVSAHGFTKLAKAIALQDYLHVSSSEEISKGREKPSILSSAFEALMAG 135

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +YL+ G+      + K    RA K         D KT LQE   A+F V P Y++    G
Sbjct: 136 VYLEAGLAKVRKIIQKLL-NRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLQEKG 194

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           PDH   F + + I     A     SK+ AEQ  A + L++
Sbjct: 195 PDHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQALQK 234


>gi|152971423|ref|YP_001336532.1| ribonuclease III [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|206580271|ref|YP_002237090.1| ribonuclease III [Klebsiella pneumoniae 342]
 gi|288934052|ref|YP_003438111.1| ribonuclease III [Klebsiella variicola At-22]
 gi|189043322|sp|A6TCI1|RNC_KLEP7 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226741374|sp|B5XNH0|RNC_KLEP3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|150956272|gb|ABR78302.1| ribonuclease III [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|206569329|gb|ACI11105.1| ribonuclease III [Klebsiella pneumoniae 342]
 gi|288888781|gb|ADC57099.1| ribonuclease III [Klebsiella variicola At-22]
          Length = 226

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 124/225 (55%), Gaps = 6/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFHHQELLQQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSDIQNVERLILSWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222
              G  HD  FT+  ++SGL+ P  G   S+R AEQ AA + LK+
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQALKK 222


>gi|312881718|ref|ZP_07741495.1| ribonuclease III [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370608|gb|EFP98083.1| ribonuclease III [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 225

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/205 (35%), Positives = 112/205 (54%), Gaps = 6/205 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           TLEK++GY F +  L+  ALTH S +  + E   RLEFLGD IL  +I+  L+  F    
Sbjct: 7   TLEKKLGYQFDDAELISLALTHRSANSKHNE---RLEFLGDSILSFVIADDLYQRFPQIN 63

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG++S    +LV  +T +++ RE  L  ++++     K       SI AD VE++I A+Y
Sbjct: 64  EGDMSRMRATLVRGKTLAELGREFQLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAIY 123

Query: 128 LDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           +D  IEV    +  +++ R  A++ G  ++D KT LQE+   +    P Y VT   G  H
Sbjct: 124 MDSNIEVVRGIILAWYQGRLEAIEPGASQKDPKTRLQEFLQGRRKPLPAYTVTNIKGEAH 183

Query: 186 DPRFTVVVEISGL-APAQGMDCSKR 209
           +  FTV  E++G+  P  G   S+R
Sbjct: 184 NQEFTVSCEVAGINQPVVGKGTSRR 208


>gi|269140067|ref|YP_003296768.1| ribonuclease III [Edwardsiella tarda EIB202]
 gi|267985728|gb|ACY85557.1| ribonuclease III [Edwardsiella tarda EIB202]
 gi|304559895|gb|ADM42559.1| Ribonuclease III [Edwardsiella tarda FL6-60]
          Length = 226

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/225 (36%), Positives = 122/225 (54%), Gaps = 6/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F  + LL +ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFRQQDLLMQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  ++  R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGIFLDSDIQTIERLILDWYHSRLEEISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222
              G  HD  FT+  ++SGL AP  G+  S+R AEQ AA + LK+
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSAPVVGVGSSRRKAEQAAAEQALKQ 222


>gi|160871765|ref|ZP_02061897.1| ribonuclease III [Rickettsiella grylli]
 gi|159120564|gb|EDP45902.1| ribonuclease III [Rickettsiella grylli]
          Length = 230

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/217 (35%), Positives = 122/217 (56%), Gaps = 5/217 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           +L +++ Y F N  LLE AL+H S   +  ++ ERLE+LGD +L  +I+  LF     A+
Sbjct: 7   SLCEKLNYQFKNPELLEDALSHRSFRGN--KNNERLEYLGDAVLNFVIAAALFRQNIKAR 64

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EGELS    +LV  ET + +A+  +L  ++R+ +   K   +   SI AD +E+++ A+Y
Sbjct: 65  EGELSRLRANLVRGETLTDLAQGFELGKYLRLGAGELKTGGAQRKSILADGMEAVVGAIY 124

Query: 128 LDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           LDGG +   T + +++  R   ++     +D KT+LQE+  AK    P Y +    GP H
Sbjct: 125 LDGGFQACETCILRWYANRLENIEMIPDLKDPKTQLQEYLQAKKLALPVYTILALEGPAH 184

Query: 186 DPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221
              F V  +I GL   A G+  S+R AEQ AA ++L+
Sbjct: 185 QQSFKVECQIQGLPHKAIGLGSSRRRAEQKAAEKILE 221


>gi|229828999|ref|ZP_04455068.1| hypothetical protein GCWU000342_01084 [Shuttleworthia satelles DSM
           14600]
 gi|229792162|gb|EEP28276.1| hypothetical protein GCWU000342_01084 [Shuttleworthia satelles DSM
           14600]
          Length = 230

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 119/221 (53%), Gaps = 5/221 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59
           +R  TLE +IGY F ++SLL +ALTHSS ++          ERLEFLGD +L ++ S  L
Sbjct: 1   MRNETLEAKIGYQFQDKSLLRQALTHSSFANERHMKAHSDNERLEFLGDAVLEVVSSEFL 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           + ++    EG L+    SLV   T +  ARE+ L + +R++    +       SI +D +
Sbjct: 61  YLNYPDLPEGRLTPLRASLVCEPTLAIAAREIGLGACLRLARGEDQSGGRERDSILSDAL 120

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E++I A++LDGGIE A   + +Y     ++  K   D+KT LQE   A    + +Y +  
Sbjct: 121 EAVIGAVFLDGGIEPAKALIIRYILT-DIEHKKLYHDSKTRLQEMVQAMEEASLDYVLVR 179

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             GPDH  RF     + G    +G   SK+A+EQ AA + L
Sbjct: 180 EEGPDHAKRFVTEARLDGRTIGRGEGGSKKASEQEAAYQGL 220


>gi|255655258|ref|ZP_05400667.1| ribonuclease III [Clostridium difficile QCD-23m63]
 gi|296451243|ref|ZP_06892983.1| ribonuclease III [Clostridium difficile NAP08]
 gi|296880405|ref|ZP_06904368.1| ribonuclease III [Clostridium difficile NAP07]
 gi|296259849|gb|EFH06704.1| ribonuclease III [Clostridium difficile NAP08]
 gi|296428646|gb|EFH14530.1| ribonuclease III [Clostridium difficile NAP07]
          Length = 236

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 119/222 (53%), Gaps = 5/222 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLISTLLFNHFDSA 66
            E  I Y F N+  + +ALTHSS S+  ++    ERLEFLGD +LG++IS  LFN   + 
Sbjct: 14  FENVINYKFKNKEYILEALTHSSYSNENKKYNFNERLEFLGDSVLGIVISDYLFNEEANL 73

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGEL+    ++V  ++ S+VA +++L   + +            TSI AD  E++IAA+
Sbjct: 74  PEGELTKLRANIVCEDSLSEVANDINLGVHMLLGRGEEATGGRHRTSILADAFEAVIAAI 133

Query: 127 YLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLDGG E A  F+  + +     S  G   RD KT LQE           Y++    GPD
Sbjct: 134 YLDGGFESARQFILHHMENIIYDSRKGNIFRDYKTHLQEVLQGNGENNIWYRLIEEKGPD 193

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           H+ RF + V I+      G   SK+ AEQ+AA   LK++ +W
Sbjct: 194 HNKRFVMEVGINEDVLGIGEGKSKKEAEQLAAKIALKKK-LW 234


>gi|289547872|ref|YP_003472860.1| ribonuclease III [Thermocrinis albus DSM 14484]
 gi|289181489|gb|ADC88733.1| ribonuclease III [Thermocrinis albus DSM 14484]
          Length = 237

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/217 (37%), Positives = 127/217 (58%), Gaps = 11/217 (5%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            +EK +GY+F + SLLE+ALTH S++   + SYE LEFLGD ++ L +  LL  +F  ++
Sbjct: 11  VIEKVLGYSFRDPSLLEEALTHRSVAVG-RRSYEVLEFLGDALINLFVVDLLLQNFPQSR 69

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG+L++     VS +  SQ+++EL L S I++    RK++ S   SI ADV E+L  A+Y
Sbjct: 70  EGQLAIMKAFFVSEDFLSQLSQELGLESLIKMERR-RKNISS---SILADVFEALWGAIY 125

Query: 128 LDGGIEVAGT---FVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +D G ++  T   F   Y ++  + +K G +R+D KT LQE     +   P Y++    G
Sbjct: 126 MDTGRDLNTTRDLFFKNYGERILQVVKEGSYRKDYKTLLQELTQHLWKTRPTYRLIGTEG 185

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           P H+  F V  ++ G   A G   SK+ AEQ +A ++
Sbjct: 186 PHHNRIFEVECQV-GSYRAVGKGKSKKEAEQESAKKL 221


>gi|224534577|ref|ZP_03675153.1| ribonuclease III [Borrelia spielmanii A14S]
 gi|224514254|gb|EEF84572.1| ribonuclease III [Borrelia spielmanii A14S]
          Length = 245

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/212 (36%), Positives = 114/212 (53%), Gaps = 9/212 (4%)

Query: 17  FANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           F N  LL  AL+HSS S+   +   + ERLEFLGD +L L+I+  L+  + +  EGELS 
Sbjct: 29  FNNFDLLNTALSHSSYSNELDQKSGNNERLEFLGDSVLNLIITDHLYKTYPNKSEGELSK 88

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
             + +VS ++ S +ARE+DL S+I +      +       I AD +E+ + A+YLD G  
Sbjct: 89  ARSYIVSEDSLSSIAREIDLGSYILLGRGEESNDGRNKKGILADAIEAFVGAIYLDSGFS 148

Query: 134 VAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
           +A  FV    D Y +      G F +D K+ LQE+   K+ ++P YK+    GPDHD  F
Sbjct: 149 IATEFVVGLFDMYIR-LMFNRGDF-KDYKSLLQEYVQKKYKISPSYKLDKEIGPDHDKVF 206

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V + +     + G   SK+ AE  AA   LK
Sbjct: 207 CVELYVGEKFISNGKGKSKKEAEMRAAEVALK 238


>gi|150016054|ref|YP_001308308.1| ribonuclease III [Clostridium beijerinckii NCIMB 8052]
 gi|189043303|sp|A6LSM2|RNC_CLOB8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|149902519|gb|ABR33352.1| Ribonuclease III [Clostridium beijerinckii NCIMB 8052]
          Length = 232

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 123/224 (54%), Gaps = 4/224 (1%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58
           M+      +E+ +G  F N +LL+ ALTHSS  + ++  E  ERLEFLGD +L L I+  
Sbjct: 1   MNRYTLKEIEENLGVFFNNHTLLKTALTHSSFGNQFKDAEYNERLEFLGDSVLQLCITEY 60

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LFN++    EGEL+   + +V   +  ++A++++L S+IR+S            SIQAD 
Sbjct: 61  LFNNYKHKTEGELTKIRSLIVCENSLYEIAKKINLGSYIRMSKGEEITGGRERISIQADA 120

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYK 176
           VE++IAA+YLD GI     F+  ++++   K  + +   D KT+LQE       V  +Y+
Sbjct: 121 VEAIIAAVYLDKGIGFVRDFILLHFEEIINKAINNEIVLDFKTKLQELLQKDGEVVIQYE 180

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +T   GP H  +F   V I      +G   SK+ AEQ AA + L
Sbjct: 181 LTKFEGPPHRRKFFTNVVIDKKLMGEGSGYSKKEAEQNAAKQAL 224


>gi|25010800|ref|NP_735195.1| ribonuclease III [Streptococcus agalactiae NEM316]
 gi|76788414|ref|YP_329471.1| ribonuclease III [Streptococcus agalactiae A909]
 gi|76798198|ref|ZP_00780449.1| ribonuclease III [Streptococcus agalactiae 18RS21]
 gi|77406421|ref|ZP_00783480.1| ribonuclease III [Streptococcus agalactiae H36B]
 gi|77408361|ref|ZP_00785102.1| ribonuclease III [Streptococcus agalactiae COH1]
 gi|77410795|ref|ZP_00787153.1| ribonuclease III [Streptococcus agalactiae CJB111]
 gi|77413080|ref|ZP_00789281.1| ribonuclease III [Streptococcus agalactiae 515]
 gi|81457210|sp|Q8E680|RNC_STRA3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|90101649|sp|Q3K1Y2|RNC_STRA1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|90101650|sp|Q8E0K7|RNC_STRA5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|23095154|emb|CAD46389.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76563471|gb|ABA46055.1| ribonuclease III [Streptococcus agalactiae A909]
 gi|76586461|gb|EAO62968.1| ribonuclease III [Streptococcus agalactiae 18RS21]
 gi|77160873|gb|EAO71983.1| ribonuclease III [Streptococcus agalactiae 515]
 gi|77163174|gb|EAO74127.1| ribonuclease III [Streptococcus agalactiae CJB111]
 gi|77173042|gb|EAO76170.1| ribonuclease III [Streptococcus agalactiae COH1]
 gi|77174985|gb|EAO77795.1| ribonuclease III [Streptococcus agalactiae H36B]
          Length = 228

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/226 (37%), Positives = 118/226 (52%), Gaps = 8/226 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  LR S LEK  G  FAN+ LL+ A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MKELR-SKLEKDYGIVFANQELLDTAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  +    EG+LS   + +V  E+ +  +R      +I++     K       +I  
Sbjct: 60  QYLFTKYPQKAEGDLSKLRSMIVREESLAGFSRLCGFDHYIKLGKGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D+ E+ + AL LD G+EV   FV+K       K G + R  D KT LQE   +   V  +
Sbjct: 120 DLFEAFLGALLLDKGVEVVHAFVNKVMIPHVEK-GTYERVKDYKTSLQELLQSHGDVKID 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           Y+VT  SGP H   F V V ++    +QG+  SK+AAEQ AA   L
Sbjct: 179 YQVTNESGPAHAKEFEVTVSVNQENLSQGIGRSKKAAEQDAAKNAL 224


>gi|293609826|ref|ZP_06692128.1| ribonuclease 3 [Acinetobacter sp. SH024]
 gi|292828278|gb|EFF86641.1| ribonuclease 3 [Acinetobacter sp. SH024]
          Length = 230

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/213 (37%), Positives = 116/213 (54%), Gaps = 5/213 (2%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71
           RIGY F    LL+ ALTH S+SH Y  +YERLEFLGD +LG++I+  L++ + +  EG L
Sbjct: 16  RIGYQFKQLELLQLALTHRSVSHKY--NYERLEFLGDSLLGMIIANYLYHAYPNENEGRL 73

Query: 72  SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131
           +    +LV  E   ++A +L L+  + +S+   K       SI AD VE++I A+YLD G
Sbjct: 74  TRMRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRESILADTVEAIIGAIYLDSG 133

Query: 132 -IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
            + +    V K++      ++     +D K+ LQE+  A+    P Y+V    G      
Sbjct: 134 DLNLLKDIVLKWYIPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQH 193

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           F V   + GL    G   S+R AEQ AAAE+LK
Sbjct: 194 FKVECVVDGLPKIYGEGSSRRFAEQAAAAEILK 226


>gi|301168615|emb|CBW28205.1| RNase III [Haemophilus influenzae 10810]
          Length = 227

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/222 (38%), Positives = 121/222 (54%), Gaps = 15/222 (6%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE++IGY F + +LL++ALTH S +  + E   RLEFLGD IL   I+  L++ F    E
Sbjct: 7   LERKIGYCFNDITLLKQALTHRSAATQHNE---RLEFLGDSILNFTIAEALYHQFPRCNE 63

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELS    +LV   T + +AR+ +L  ++ + S   K+      SI AD VE++I A+ L
Sbjct: 64  GELSRMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVEAIIGAMSL 123

Query: 129 DGGIEVAGTFVDKYWKQRAL---KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           D G+ V  T V + W Q+ L   K G  ++DAKT LQE+   K    P Y+V    G  H
Sbjct: 124 DQGLAVT-TQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPLPTYEVVNIQGEAH 182

Query: 186 DPRFTVVVEISGLAP------AQGMDCSKRAAEQVAAAEVLK 221
              FTV  ++           A+G   S+R AEQ AA ++LK
Sbjct: 183 CQIFTVECKVKSAGKIDRTFVAKG--SSRRKAEQAAAEQILK 222


>gi|22536887|ref|NP_687738.1| ribonuclease III [Streptococcus agalactiae 2603V/R]
 gi|22533737|gb|AAM99610.1|AE014224_13 ribonuclease III [Streptococcus agalactiae 2603V/R]
 gi|319744744|gb|EFV97086.1| ribonuclease III [Streptococcus agalactiae ATCC 13813]
          Length = 236

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/226 (37%), Positives = 118/226 (52%), Gaps = 8/226 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  LR S LEK  G  FAN+ LL+ A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 9   MKELR-SKLEKDYGIVFANQELLDTAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLIS 67

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  +    EG+LS   + +V  E+ +  +R      +I++     K       +I  
Sbjct: 68  QYLFTKYPQKAEGDLSKLRSMIVREESLAGFSRLCGFDHYIKLGKGEEKSGGRNRDTILG 127

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D+ E+ + AL LD G+EV   FV+K       K G + R  D KT LQE   +   V  +
Sbjct: 128 DLFEAFLGALLLDKGVEVVHAFVNKVMIPHVEK-GTYERVKDYKTSLQELLQSHGDVKID 186

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           Y+VT  SGP H   F V V ++    +QG+  SK+AAEQ AA   L
Sbjct: 187 YQVTNESGPAHAKEFEVTVSVNQENLSQGIGRSKKAAEQDAAKNAL 232


>gi|51473232|ref|YP_066989.1| ribonuclease III [Rickettsia typhi str. Wilmington]
 gi|81390308|sp|Q68XY5|RNC_RICTY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|51459544|gb|AAU03507.1| RNase D [Rickettsia typhi str. Wilmington]
          Length = 227

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/194 (37%), Positives = 106/194 (54%), Gaps = 4/194 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61
           +  LE  +GY+F N+ LL +AL+H S+     + Y + YERLEFLGD +L LLI+ +LF 
Sbjct: 4   FEKLETLLGYSFKNKELLIEALSHPSLRQYHEYKYDKDYERLEFLGDAVLNLLITEILFK 63

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +F++ KEG L+   + LV  ET   V  +L L  +I ++            +   +V E+
Sbjct: 64  NFENYKEGNLAKIRSYLVCKETICIVGTKLALKDYIIMTHGEEVAGGRDNPNNIENVTEA 123

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           LIAA+YLD  IE+    ++K W +          D KT LQEWA A     P Y++  R 
Sbjct: 124 LIAAIYLDSNIEITHNIIEKLWAEFMKVQNLTDYDPKTALQEWAQASSNHLPIYRLIKRE 183

Query: 182 GPDHDPRFTVVVEI 195
           G  H   FTV+V++
Sbjct: 184 GAAHSSIFTVLVKV 197


>gi|90416440|ref|ZP_01224371.1| ribonuclease III [marine gamma proteobacterium HTCC2207]
 gi|90331639|gb|EAS46867.1| ribonuclease III [marine gamma proteobacterium HTCC2207]
          Length = 225

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/218 (36%), Positives = 122/218 (55%), Gaps = 8/218 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L+ R+ Y F++  LL  AL+H S   +   + ERLEFLGD +LG+ IS+ LF  F  A+E
Sbjct: 8   LQDRLQYQFSDPQLLTLALSHRSCGSN---NNERLEFLGDAVLGMAISSFLFQRFPEARE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS   + +V AE+ +++AR+LDL   + +     K       SI  D VE+L+ A++L
Sbjct: 65  GDLSRIRSQVVRAESLAEIARKLDLGPELLLGPGEMKSGGHRRDSILGDTVEALLGAVFL 124

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           D G+ VA     + W   +L +       +DAKT LQEW  A+    PEY+V    G DH
Sbjct: 125 DQGL-VAVEACVQNWFGASLNTLTLDTPVKDAKTALQEWLQARGKPLPEYRVVKTEGEDH 183

Query: 186 DPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222
              FT+  +I  +   A+    S+R AEQ+ A +++K+
Sbjct: 184 SRLFTMSCKIDAVDETAEATASSRRKAEQLVAEKLVKK 221


>gi|297202624|ref|ZP_06920021.1| ribonuclease III [Streptomyces sviceus ATCC 29083]
 gi|197713199|gb|EDY57233.1| ribonuclease III [Streptomyces sviceus ATCC 29083]
          Length = 272

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/215 (36%), Positives = 117/215 (54%), Gaps = 6/215 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
           ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L+N  
Sbjct: 16  HTLLEGRLGYKLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYNTH 74

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+L+    ++V++   ++V R LDL SFIR+             SI AD +E++I
Sbjct: 75  PDLPEGQLAKLRAAVVNSRALAEVGRGLDLGSFIRLGRGEEGTGGRDKASILADTLEAVI 134

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+YLD G++ A   V + +     KS       D KT LQE    +    PEY VT  +
Sbjct: 135 GAVYLDQGLKAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLVT-ET 193

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           GPDH+  FT    + G++   G   SK+ AEQ AA
Sbjct: 194 GPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 228


>gi|323491198|ref|ZP_08096384.1| ribonuclease III [Vibrio brasiliensis LMG 20546]
 gi|323314566|gb|EGA67644.1| ribonuclease III [Vibrio brasiliensis LMG 20546]
          Length = 225

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 113/206 (54%), Gaps = 6/206 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + LEK++GY F +  L+  ALTH S   ++ +  ERLEFLGD IL  +I+  L++ F   
Sbjct: 6   AKLEKKLGYQFNDAELISLALTHRS---AHGKHNERLEFLGDSILSFVIADDLYHRFPKV 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG++S    +LV   T +++ RE +L   +++     K       SI AD VE++I A+
Sbjct: 63  NEGDMSRMRATLVRGNTLAELGREFELGDHLKLGPGELKSGGFRRDSILADAVEAIIGAI 122

Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD  IEV    +  ++K R  A+K G  ++D KT LQE+   +    P Y VT   G  
Sbjct: 123 YLDSDIEVVRGIILSWYKTRLDAIKPGVSQKDPKTRLQEFLQGRRKPLPAYTVTNIKGEA 182

Query: 185 HDPRFTVVVEISGLA-PAQGMDCSKR 209
           H+  FTV  +++G+  P  G   S+R
Sbjct: 183 HNQEFTVSCDVAGIGQPVIGKGTSRR 208


>gi|29829207|ref|NP_823841.1| ribonuclease III [Streptomyces avermitilis MA-4680]
 gi|81719920|sp|Q82JT9|RNC_STRAW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|29606313|dbj|BAC70376.1| putative ribonuclease III [Streptomyces avermitilis MA-4680]
          Length = 276

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/219 (36%), Positives = 119/219 (54%), Gaps = 6/219 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           +A  ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L
Sbjct: 17  TASSHTLLEGRLGYKLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 75

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +       EG+L+    ++V++   ++V R L+L SFIR+             SI AD +
Sbjct: 76  YRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTL 135

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD G+E AG  V + +     KS       D KT LQE    +    PEY V
Sbjct: 136 EAVIGAVYLDQGLEAAGELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLV 195

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           T  +GPDH+  FT    + G++   G   SK+ AEQ AA
Sbjct: 196 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 233


>gi|68248565|ref|YP_247677.1| ribonuclease III [Haemophilus influenzae 86-028NP]
 gi|145629132|ref|ZP_01784931.1| ribonuclease III [Haemophilus influenzae 22.1-21]
 gi|145633429|ref|ZP_01789159.1| ribonuclease III [Haemophilus influenzae 3655]
 gi|145636782|ref|ZP_01792448.1| ribonuclease III [Haemophilus influenzae PittHH]
 gi|145639697|ref|ZP_01795300.1| ribonuclease III [Haemophilus influenzae PittII]
 gi|148825705|ref|YP_001290458.1| ribonuclease III [Haemophilus influenzae PittEE]
 gi|229846933|ref|ZP_04467039.1| ribonuclease III [Haemophilus influenzae 7P49H1]
 gi|260582072|ref|ZP_05849867.1| ribonuclease III [Haemophilus influenzae NT127]
 gi|81337008|sp|Q4QPN0|RNC_HAEI8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043319|sp|A5UBC4|RNC_HAEIE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|68056764|gb|AAX87017.1| ribonuclease III [Haemophilus influenzae 86-028NP]
 gi|144978635|gb|EDJ88358.1| ribonuclease III [Haemophilus influenzae 22.1-21]
 gi|144985992|gb|EDJ92594.1| ribonuclease III [Haemophilus influenzae 3655]
 gi|145270080|gb|EDK10017.1| ribonuclease III [Haemophilus influenzae PittHH]
 gi|145271254|gb|EDK11168.1| ribonuclease III [Haemophilus influenzae PittII]
 gi|148715865|gb|ABQ98075.1| ribonuclease III [Haemophilus influenzae PittEE]
 gi|229810017|gb|EEP45737.1| ribonuclease III [Haemophilus influenzae 7P49H1]
 gi|260094962|gb|EEW78855.1| ribonuclease III [Haemophilus influenzae NT127]
 gi|309750667|gb|ADO80651.1| RNase III, dsRNA [Haemophilus influenzae R2866]
          Length = 227

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/222 (38%), Positives = 121/222 (54%), Gaps = 15/222 (6%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE++IGY F + +LL++ALTH S +  + E   RLEFLGD IL   I+  L++ F    E
Sbjct: 7   LERKIGYCFNDIALLKQALTHRSAATQHNE---RLEFLGDSILNFTIAEALYHQFPRCNE 63

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELS    +LV   T + +AR+ +L  ++ + S   K+      SI AD VE++I A+ L
Sbjct: 64  GELSRMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVEAIIGAMSL 123

Query: 129 DGGIEVAGTFVDKYWKQRAL---KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           D G+ V  T V + W Q+ L   K G  ++DAKT LQE+   K    P Y+V    G  H
Sbjct: 124 DQGLAVT-TQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPLPTYEVVNIQGEAH 182

Query: 186 DPRFTVVVEISGLAP------AQGMDCSKRAAEQVAAAEVLK 221
              FTV  ++           A+G   S+R AEQ AA ++LK
Sbjct: 183 CQIFTVECKVKSAGKIDRTFVAKG--SSRRKAEQAAAEQILK 222


>gi|116748321|ref|YP_845008.1| ribonuclease III [Syntrophobacter fumaroxidans MPOB]
 gi|189043370|sp|A0LGM1|RNC_SYNFM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|116697385|gb|ABK16573.1| RNAse III [Syntrophobacter fumaroxidans MPOB]
          Length = 242

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 119/225 (52%), Gaps = 14/225 (6%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLFNHFD 64
           L+  +GY F +  LL +AL H S  H      ++  E LEFLGD +LGL IS  L   F 
Sbjct: 10  LQNLLGYRFGDEGLLHRALVHRSYLHENPHLDEKDNETLEFLGDAVLGLAISHFLLEQFP 69

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGELS   +++V+    +++A EL+L  ++ +             S+ AD +E+L+A
Sbjct: 70  DYNEGELSRLRSAIVNERELTRIAVELNLGEYLLLGKGEEMTGGRRKASLLADSLEALLA 129

Query: 125 ALYLDGGIEVAGTFVDKYW--------KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           ++YLDGG++     + K +        ++  LK+    +D KT+LQE   A++ +TP Y 
Sbjct: 130 SIYLDGGLDAVLGVIKKLFDVYLRFEKREHVLKA--LDKDYKTQLQELTQARYKLTPVYV 187

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +    GPDHD  F + V + G   A G   SK+ A+Q AA + L+
Sbjct: 188 LDREEGPDHDKTFHMNVVLEGQVLAGGSGKSKKDAQQAAAEKALQ 232


>gi|295100361|emb|CBK97906.1| RNAse III [Faecalibacterium prausnitzii L2-6]
          Length = 224

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 87/227 (38%), Positives = 126/227 (55%), Gaps = 21/227 (9%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65
           LE  IGY F +  LLE ALTH+S ++  +   +  ERLEFLGD +L ++ +  LF+ +  
Sbjct: 5   LETIIGYKFKHPELLETALTHTSYANETRPPVKHNERLEFLGDSVLQIVSADYLFHAYAD 64

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT--SIQADVVESLI 123
             EG+L+   +SLVS     Q A+E++L  ++R+     ++ C   T  S+ +D  E+LI
Sbjct: 65  RPEGDLTRIRSSLVSEGALFQFAQEINLGDYLRLGRG--EEHCGGRTRPSVVSDAFEALI 122

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTF--- 179
           AALYLDGG+EVA  F+  +     +  GK    D KT LQE         PE K+++   
Sbjct: 123 AALYLDGGMEVAKNFILPF-----ITEGKHAEADYKTRLQEIVQQ----NPEEKLSYVVE 173

Query: 180 -RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
             +GPDH+  F V V  +    A+G   SK+ AEQ AA E LK  G+
Sbjct: 174 QETGPDHNKHFVVAVRFNSDCVARGEGRSKKMAEQHAAREALKLLGV 220


>gi|54294754|ref|YP_127169.1| hypothetical protein lpl1831 [Legionella pneumophila str. Lens]
 gi|81368418|sp|Q5WVI4|RNC_LEGPL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|53754586|emb|CAH16070.1| hypothetical protein lpl1831 [Legionella pneumophila str. Lens]
          Length = 224

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/217 (36%), Positives = 119/217 (54%), Gaps = 6/217 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L +R+ Y F N + L++ALTH S      ++YER EFLGD IL  +I+  LFN F    E
Sbjct: 8   LCRRLNYHFNNMAYLKQALTHCSAG---SDNYERFEFLGDSILSFVIANELFNRFPLHSE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS   + LV  E  +++ARE+ L  ++ +     +      TSI AD +E+++AA+YL
Sbjct: 65  GQLSRLRSFLVKGEMLAEIAREIGLGDYLFLGQGELRSGGFRRTSILADALEAILAAIYL 124

Query: 129 DGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           DGG+  A   +   +  R          +DAKT+LQE+  A     PEY +T   G +H 
Sbjct: 125 DGGMTAAKQIILMLYSSRLDDPDLNHCLKDAKTQLQEFLQASKFALPEYVLTKVEGDEHA 184

Query: 187 PRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKR 222
             F V   I G++  A G   ++R AEQ+AA  +L++
Sbjct: 185 QIFHVTCTIEGVSQVAYGTGPNRRKAEQLAAKAMLEQ 221


>gi|256821980|ref|YP_003145943.1| ribonuclease III [Kangiella koreensis DSM 16069]
 gi|256795519|gb|ACV26175.1| ribonuclease III [Kangiella koreensis DSM 16069]
          Length = 229

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/212 (36%), Positives = 118/212 (55%), Gaps = 6/212 (2%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71
           R+GY F++ SLL+ ALTH S ++ + E   RLEFLGD ILG++I+  LF H   A EG+L
Sbjct: 14  RLGYQFSDPSLLKLALTHRSGANKHNE---RLEFLGDAILGMVIAEYLFTHLKKADEGQL 70

Query: 72  SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131
           +    SLV  +T +++A+E++L   + +     K       SI AD +E++I A+Y D G
Sbjct: 71  TRLRASLVKGKTLAEIAKEIELGECLYLGEGELKSGGFRRASILADALEAIIGAVYQDSG 130

Query: 132 IEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
            EVA T +   +++R   +      +D KTELQEW  ++    P+Y++   +G  H   F
Sbjct: 131 FEVAKTIILTLYQKRLQNIDLKAVHKDPKTELQEWLQSRKLPLPDYELLKVTGDPHKQTF 190

Query: 190 TVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVL 220
            V   ++       G   S+R AEQ AA + L
Sbjct: 191 DVACILAEKKVRTHGSGSSRRNAEQQAAEKAL 222


>gi|315652049|ref|ZP_07905050.1| ribonuclease III [Eubacterium saburreum DSM 3986]
 gi|315485696|gb|EFU76077.1| ribonuclease III [Eubacterium saburreum DSM 3986]
          Length = 228

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 116/222 (52%), Gaps = 5/222 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62
           + L++ +GY + NR LL++ALTHSS ++ +Q     S ERLEFLGD +L L+ S   +  
Sbjct: 6   NELQELLGYEYKNRELLKQALTHSSYANEHQLGKNGSNERLEFLGDAVLELVSSEFFYEV 65

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +    EGEL+    S V        A  + L+ FIR+          F  SI +D  E++
Sbjct: 66  YPDKPEGELTKIRASFVCEPALVDCAGNIRLSEFIRLGKGEEHTGGRFRPSIISDTFEAV 125

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           I ++YLDGG   A   + K+      ++  F  D+KT LQE   ++     EY +    G
Sbjct: 126 IGSIYLDGGFANAKEVILKFI-LNGYENKVFFYDSKTILQEIIQSQDSRPVEYCLLSEEG 184

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           PDH  +F V V I+G     G   SK++AEQ AA E LK+ G
Sbjct: 185 PDHLKKFVVAVNINGQVAGVGEGVSKKSAEQAAAYEALKKLG 226


>gi|51598958|ref|YP_073146.1| ribonuclease III [Borrelia garinii PBi]
 gi|219684131|ref|ZP_03539075.1| ribonuclease III [Borrelia garinii PBr]
 gi|81609804|sp|Q660G7|RNC_BORGA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|51573529|gb|AAU07554.1| ribonuclease III [Borrelia garinii PBi]
 gi|219672120|gb|EED29173.1| ribonuclease III [Borrelia garinii PBr]
          Length = 245

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/212 (36%), Positives = 114/212 (53%), Gaps = 9/212 (4%)

Query: 17  FANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           F N  LL  AL+HSS S+   +   + ERLEFLGD +L L+I+  L+  + +  EGELS 
Sbjct: 29  FNNFDLLNTALSHSSYSNELDQKADNNERLEFLGDSVLNLIITDHLYKTYPNKSEGELSK 88

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
             + +VS ++ S +ARE+DL S+I +      +       I AD +E+ + A+YLD G  
Sbjct: 89  ARSYIVSEDSLSSIAREIDLGSYILLGRGEESNDGRNKKGILADAIEAFVGAIYLDSGFS 148

Query: 134 VAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
           +A  FV    D Y +      G F +D K+ LQE+   K+ ++P YK+    GPDHD  F
Sbjct: 149 MATEFVVGLFDMYIR-LMFNRGDF-KDYKSLLQEYVQKKYKISPSYKLDKEIGPDHDKVF 206

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V + +     + G   SK+ AE  AA   LK
Sbjct: 207 CVELYVGEKFISNGKGKSKKEAEMRAAEVALK 238


>gi|111115536|ref|YP_710154.1| ribonuclease III [Borrelia afzelii PKo]
 gi|123341290|sp|Q0SMF0|RNC_BORAP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|110890810|gb|ABH01978.1| ribonuclease III [Borrelia afzelii PKo]
          Length = 245

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/212 (36%), Positives = 114/212 (53%), Gaps = 9/212 (4%)

Query: 17  FANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           F N  LL  AL+HSS S+   +   + ERLEFLGD +L L+I+  L+  + +  EGELS 
Sbjct: 29  FNNFDLLNTALSHSSYSNELDQKSDNNERLEFLGDSVLNLIITDHLYKTYPNKSEGELSK 88

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
             + +VS ++ S +ARE+DL S+I +      +       I AD +E+ + A+YLD G  
Sbjct: 89  ARSYIVSEDSLSSIAREIDLGSYILLGRGEESNDGRNKKGILADAIEAFVGAIYLDSGFL 148

Query: 134 VAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
           +A  FV    D Y +      G F +D K+ LQE+   K+ ++P YK+    GPDHD  F
Sbjct: 149 IATEFVVGLFDMYIR-LMFNRGDF-KDYKSLLQEYVQKKYKISPNYKLDKEIGPDHDKVF 206

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V + +     + G   SK+ AE  AA   LK
Sbjct: 207 CVELYVGEKFISNGKGKSKKEAEMRAAEVALK 238


>gi|83753776|pdb|1YZ9|A Chain A, Crystal Structure Of Rnase Iii Mutant E110q From Aquifex
           Aeolicus Complexed With Double Stranded Rna At 2.1-
           Angstrom Resolution
 gi|83753777|pdb|1YZ9|B Chain B, Crystal Structure Of Rnase Iii Mutant E110q From Aquifex
           Aeolicus Complexed With Double Stranded Rna At 2.1-
           Angstrom Resolution
          Length = 221

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/218 (37%), Positives = 122/218 (55%), Gaps = 14/218 (6%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LEK++GY F ++SLLEKALTH  +S+S +E YE LEFLGD ++   I  LL  +  + +E
Sbjct: 7   LEKKLGYTFKDKSLLEKALTH--VSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKRE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G LS     L+S E  + +A++L+L  FIR+             +I  DV ++L AA+Y+
Sbjct: 65  GFLSPLKAYLISEEFFNLLAQKLELHKFIRIKR------GKINETIIGDVFQALWAAVYI 118

Query: 129 DGGIEVAGT--FVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           D G +   T     K +K+    A+K G+ ++D KT LQE    ++   PEY++    GP
Sbjct: 119 DSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISVEGP 178

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            H  +F V  +I       G   SK+ AEQ AA E++K
Sbjct: 179 HHKKKFIVEAKIKEYRTL-GEGKSKKEAEQRAAEELIK 215


>gi|91205996|ref|YP_538351.1| ribonuclease III [Rickettsia bellii RML369-C]
 gi|157826640|ref|YP_001495704.1| ribonuclease III [Rickettsia bellii OSU 85-389]
 gi|122425284|sp|Q1RHA2|RNC_RICBR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043340|sp|A8GYE2|RNC_RICB8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|91069540|gb|ABE05262.1| Ribonuclease III [Rickettsia bellii RML369-C]
 gi|157801944|gb|ABV78667.1| ribonuclease III [Rickettsia bellii OSU 85-389]
          Length = 227

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 118/221 (53%), Gaps = 5/221 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQ--ESYERLEFLGDRILGLLISTLLFN 61
           +  LEK + Y+F N++LL +AL+H S+   H Y+  + YERLEFLGD +L L+I+ +LFN
Sbjct: 4   FEELEKLLDYSFKNKALLTEALSHPSLRQHHEYKANKDYERLEFLGDAVLNLIITEILFN 63

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +F    EG L+   + LV  ET   V  +L L ++I ++            +   +V E+
Sbjct: 64  NFKEYNEGNLAKIRSYLVCKETICVVGAKLGLKNYIIMTHGEEIAGGRDNPNNIENVTEA 123

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           LIAA+YLD  I      + K W +          D KT LQEWA +K    P Y++  R 
Sbjct: 124 LIAAIYLDSDITTIHNIIGKLWAEFIKVKDLTDYDPKTALQEWAQSKDHHIPIYRLIKRE 183

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           G  H   FTV V+I+G     G   S + AE+ AA E+L +
Sbjct: 184 GVAHLSTFTVSVKINGYEQT-GKGHSIKEAEKNAARELLHK 223


>gi|307256562|ref|ZP_07538343.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|306864972|gb|EFM96874.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
          Length = 243

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/226 (37%), Positives = 120/226 (53%), Gaps = 8/226 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ ++   L+K++GY F N   L +ALTH S      ++ ERLEFLGD IL   I   LF
Sbjct: 18  MNNMQLERLQKKLGYQFTNLDYLLQALTHRSAGA---KNNERLEFLGDSILNFAIGKALF 74

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELS    +LV  +T + +AR+  L  ++++ +   K       SI +D VE
Sbjct: 75  EKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVE 134

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRAL---KSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           ++IAA+YLD G++ A   V   W Q  L   K G  ++D KT LQE+   +    P Y+V
Sbjct: 135 AIIAAIYLDAGMDKAIAQVH-LWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEV 193

Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKR 222
               G  H+  F V  +I  L     G+  S+R AEQ AA +VL +
Sbjct: 194 LDIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAK 239


>gi|85059765|ref|YP_455467.1| ribonuclease III [Sodalis glossinidius str. 'morsitans']
 gi|123519061|sp|Q2NS13|RNC_SODGM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|84780285|dbj|BAE75062.1| ribonuclease III [Sodalis glossinidius str. 'morsitans']
          Length = 226

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/224 (36%), Positives = 119/224 (53%), Gaps = 6/224 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L+K++GY F    LL +ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 1   MNPILTNRLQKKLGYTFQQHDLLLQALTHRSASSKHNE---RLEFLGDSILSYVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  QRFPRVDEGDMSRMRATLVRGNTLAEMAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I      +  +++ R   +  G  ++D KT LQE+   +    P Y+V 
Sbjct: 118 ALIGGVFLDSDIRTVEKLILDWYRSRLDEISPGDKQKDPKTRLQEYLQGRHLPLPTYQVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221
              G  HD  FT+  ++SGLA P  G   S+R AEQ AA + LK
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLAQPVVGNGSSRRKAEQAAAEQALK 221


>gi|167630237|ref|YP_001680736.1| ribonuclease iii [Heliobacterium modesticaldum Ice1]
 gi|226735377|sp|B0TGW4|RNC_HELMI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|167592977|gb|ABZ84725.1| ribonuclease iii [Heliobacterium modesticaldum Ice1]
          Length = 235

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/220 (35%), Positives = 110/220 (50%), Gaps = 5/220 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNH 62
           + L +RIG A  + + LE ALTH S       +  E  +RLEFLGD +LGL+I   LF  
Sbjct: 9   AELARRIGIASEDLATLEMALTHPSFVYENPQAPPEHNQRLEFLGDAVLGLVIGEQLFVR 68

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           + +  EGELS R  ++V     +  AR L L +++++             SI AD +E++
Sbjct: 69  YPTWTEGELSRRRAAVVCEANLADGARRLQLGAWLKLGRGEEASGGREKPSILADALEAV 128

Query: 123 IAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           I A++L GGIE A  F VD +    A        D KT  QEW          Y +   S
Sbjct: 129 IGAIFLSGGIEAARRFIVDLFGDALANAQNLVSGDNKTAFQEWVQRTGPADIRYCIVDES 188

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           GPDHD RF   V ++G   A G   +K+ AEQ AA   ++
Sbjct: 189 GPDHDKRFVAAVMVNGTVIADGQGRTKKEAEQQAAGRAMR 228


>gi|59712694|ref|YP_205470.1| ribonuclease III [Vibrio fischeri ES114]
 gi|197335272|ref|YP_002156886.1| ribonuclease III [Vibrio fischeri MJ11]
 gi|75431522|sp|Q5E314|RNC_VIBF1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|59480795|gb|AAW86582.1| RNase III [Vibrio fischeri ES114]
 gi|197316762|gb|ACH66209.1| ribonuclease III [Vibrio fischeri MJ11]
          Length = 223

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/211 (35%), Positives = 113/211 (53%), Gaps = 6/211 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LEK+IGY F + S L+ ALTH S + ++ E   RLEFLGD IL  +++  L++ F    E
Sbjct: 8   LEKKIGYQFKDESFLKLALTHRSANGTHNE---RLEFLGDSILSFVVADDLYHRFPKVDE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G++S    +LV   T +++ RE  L  ++ +     K       SI AD VE++I A+YL
Sbjct: 65  GDMSRMRATLVRGHTLAELGREFQLGDYLYLGPGELKSGGFRRDSILADAVEAIIGAIYL 124

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D   E     +  ++  R  +++ G  ++D KT LQE+   +    P Y VT   G  H+
Sbjct: 125 DSDTETVRGIILSWYNTRLESIEPGVSQKDPKTRLQEYLQGRRKPLPTYTVTKIKGEAHN 184

Query: 187 PRFTVVVEISGL-APAQGMDCSKRAAEQVAA 216
             FT+   ++GL  P  G   S+R AEQ AA
Sbjct: 185 QEFTIECIVAGLDKPVIGKGSSRRKAEQSAA 215


>gi|16271989|ref|NP_438187.1| ribonuclease III [Haemophilus influenzae Rd KW20]
 gi|260580682|ref|ZP_05848509.1| ribonuclease III [Haemophilus influenzae RdAW]
 gi|1173093|sp|P44441|RNC_HAEIN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|1572958|gb|AAC21692.1| ribonuclease III (rnc) [Haemophilus influenzae Rd KW20]
 gi|260092744|gb|EEW76680.1| ribonuclease III [Haemophilus influenzae RdAW]
          Length = 227

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/223 (38%), Positives = 122/223 (54%), Gaps = 17/223 (7%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE++IGY F + +LL++ALTH S +  + E   RLEFLGD IL   I+  L++ F    E
Sbjct: 7   LERKIGYRFNDIALLKQALTHRSAATQHNE---RLEFLGDSILNFTIAEALYHQFPRCNE 63

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELS    +LV   T + +AR+ +L  ++ + S   K+      SI AD VE++I A+ L
Sbjct: 64  GELSRMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVEAIIGAMSL 123

Query: 129 DGGIEVAGTFVDKYWKQRAL---KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           D G+ V  T V + W Q+ L   K G  ++DAKT LQE+   K    P Y+V    G  H
Sbjct: 124 DQGLAVT-TQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPLPTYEVVNIQGEAH 182

Query: 186 DPRFTVVVEISGLAPAQGMD-------CSKRAAEQVAAAEVLK 221
              FTV  ++     A+ +D        S+R AEQ AA ++LK
Sbjct: 183 CQIFTVKCKVKS---AEKIDRTFVAKGSSRRKAEQAAAEQILK 222


>gi|152993835|ref|YP_001359556.1| ribonuclease III [Sulfurovum sp. NBC37-1]
 gi|189043369|sp|A6QCJ0|RNC_SULNB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|151425696|dbj|BAF73199.1| ribonuclease III [Sulfurovum sp. NBC37-1]
          Length = 223

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 116/222 (52%), Gaps = 7/222 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           YS LEKR+ Y F ++ L+ +ALTH S    Y    ERLEFLGD +L L++   LF  F  
Sbjct: 4   YSQLEKRLNYTFKDKQLIIEALTHKSYKKPYNN--ERLEFLGDAVLDLIVGEYLFKKFPK 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           + EG LS    SLV+    + +AR++DL S+I +S     +      S+ ++  E++I A
Sbjct: 62  SDEGILSKIRASLVNESGFTLLARKIDLGSYIYLSLAEENNNGRDKPSLLSNAFEAIIGA 121

Query: 126 LYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YL+ G++ A     K  ++    +      +D KT LQE   A   VTP Y++   SGP
Sbjct: 122 VYLEAGLDTAKEISIKLLEECHPKIDLQSLSKDYKTALQELTQATHAVTPGYEMLGSSGP 181

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA---EVLKR 222
           DH   F + V +     A     SK+ A+Q AA    E LK+
Sbjct: 182 DHKKEFEIAVTLDNKTIATAKGKSKKDAQQKAAKIALEALKK 223


>gi|255320780|ref|ZP_05361955.1| ribonuclease III [Acinetobacter radioresistens SK82]
 gi|262379444|ref|ZP_06072600.1| ribonuclease III [Acinetobacter radioresistens SH164]
 gi|255302157|gb|EET81399.1| ribonuclease III [Acinetobacter radioresistens SK82]
 gi|262298901|gb|EEY86814.1| ribonuclease III [Acinetobacter radioresistens SH164]
          Length = 230

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/216 (36%), Positives = 117/216 (54%), Gaps = 5/216 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L  RIGY F    LL+ ALTH S+SH Y  +YERLEFLGD +LG++I+  L++ +    E
Sbjct: 13  LPSRIGYQFKQPELLQLALTHRSVSHKY--NYERLEFLGDSLLGMIIANYLYHAYPFENE 70

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G L+    +LV  E   ++A +L L+  + +S+   K       SI AD VE++I A+Y+
Sbjct: 71  GRLTRMRATLVRQEALGKIANDLKLSQCLILSTGELKSGGHHRESILADTVEAIIGAIYI 130

Query: 129 DGG-IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           D G +++    V K++      ++     +D K+ LQE+  A+    P Y+V    G   
Sbjct: 131 DCGELKILQDIVLKWYGPYLNNIEPTDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDAP 190

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +  F V   +  L    G   S+R AEQ AAAE+LK
Sbjct: 191 NQHFKVECSVDSLPKFIGEGSSRRFAEQAAAAEILK 226


>gi|150390513|ref|YP_001320562.1| ribonuclease III [Alkaliphilus metalliredigens QYMF]
 gi|149950375|gb|ABR48903.1| Ribonuclease III [Alkaliphilus metalliredigens QYMF]
          Length = 239

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 118/221 (53%), Gaps = 8/221 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
            E+ I Y F ++ LL++ALTHSS ++  +    +  ERLEFLGD +LG++IS  +F  + 
Sbjct: 14  FEEMIQYQFKDKQLLKEALTHSSYANESKVKKIKHNERLEFLGDSVLGIIISDYIFKKYT 73

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+L+    ++V        A +++L  F+R+             SI AD  E+LI 
Sbjct: 74  HLPEGDLTKVRANVVCEPALGSCATKINLGGFLRLGRGEEVSGGRQRESILADAFEALIG 133

Query: 125 ALYLDGGIEVAGTFVDKYW---KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           ALYLDGG+ +A TFV  +     ++A K   FR D KT LQE   +K      Y+V   S
Sbjct: 134 ALYLDGGMVIAQTFVLNHLIDSVEQATKGSLFR-DYKTYLQELLQSKHSERITYQVIKES 192

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           GPDH   F V V +       GM  SK+ AEQ AA E +++
Sbjct: 193 GPDHSKIFDVEVLLGEQLLGHGMGKSKKEAEQRAAKEAVEK 233


>gi|332289238|ref|YP_004420090.1| ribonuclease III [Gallibacterium anatis UMN179]
 gi|330432134|gb|AEC17193.1| ribonuclease III [Gallibacterium anatis UMN179]
          Length = 226

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 117/223 (52%), Gaps = 6/223 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+      L+ ++ Y F   +LL++ALTH S +    E  ERLEFLGD IL   I   L+
Sbjct: 1   MNNQHLDRLQNKLSYQFKKMALLQQALTHRSAA---SEHNERLEFLGDSILNFTIGEALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F  + EG+LS    +LV  +T +Q+A E DL  ++++     K      +SI +D VE
Sbjct: 58  HQFPKSAEGDLSRMRATLVREQTLAQIAIEFDLGEYLKLGPGELKSGGYRRSSILSDCVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD   E     +  +++QR   +K G  ++D KT LQE+        P Y V 
Sbjct: 118 AIIGAIYLDSNFEKVKETILNWYQQRLAEIKPGDNQKDPKTRLQEYLQGIRQPLPTYNVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVL 220
              G  H+  F V  +IS      +G+  S+R AEQ AA ++L
Sbjct: 178 EIKGEAHNQTFKVTCKISQSDTLFEGIGSSRRKAEQAAAEKIL 220


>gi|145630695|ref|ZP_01786474.1| ribonuclease III [Haemophilus influenzae R3021]
 gi|145641851|ref|ZP_01797426.1| ribonuclease III [Haemophilus influenzae R3021]
 gi|144983821|gb|EDJ91271.1| ribonuclease III [Haemophilus influenzae R3021]
 gi|145273473|gb|EDK13344.1| ribonuclease III [Haemophilus influenzae 22.4-21]
          Length = 227

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 121/222 (54%), Gaps = 15/222 (6%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE++IGY F + +LL++ALTH S +  + E   RLEFLGD IL   I+  L++ F    E
Sbjct: 7   LERKIGYRFNDIALLKQALTHRSAATQHNE---RLEFLGDSILNFTIAEALYHQFPRCNE 63

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELS    +LV   T + +AR+ +L  ++ + S   K+      SI AD VE++I A+ L
Sbjct: 64  GELSRMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVEAIIGAMSL 123

Query: 129 DGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D G+ V    +  +++Q    +K G  ++DAKT LQE+   K    P Y+V    G  H 
Sbjct: 124 DQGLAVTTQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPLPTYEVVNIQGEAHC 183

Query: 187 PRFTVVVEISGLAPAQGMD-------CSKRAAEQVAAAEVLK 221
             FTV  ++     A+ +D        S+R AEQ AA ++LK
Sbjct: 184 QIFTVECKVKS---AEKIDRTFVAKGSSRRKAEQAAAEQILK 222


>gi|332305561|ref|YP_004433412.1| ribonuclease III [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332172890|gb|AEE22144.1| ribonuclease III [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 227

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/219 (36%), Positives = 118/219 (53%), Gaps = 6/219 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y  L K++GY F + + L  ALTH S+  ++ E   RLEFLGD +LGL+I+  LF  F  
Sbjct: 7   YKPLYKKLGYEFQDPNNLTIALTHRSVGANHNE---RLEFLGDAVLGLVIAKALFERFPK 63

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG L+   +SLV  +T ++VARE  L   + +     K       SI AD VE++I A
Sbjct: 64  QPEGNLTRMRSSLVKGDTLAEVAREFALGDLLLLGPGELKSGGHRRDSILADAVEAIIGA 123

Query: 126 LYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +Y + G++     +  ++ +R  AL      +D KT LQE+   +    PEY+V   SG 
Sbjct: 124 IYQEVGMQGCEPLILAWFAKRIEALNPDATPKDDKTRLQEYLQGRQLPLPEYEVIDISGK 183

Query: 184 DHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLK 221
            HD  FTV   ++GL +P  G   S+R AEQ  A + L+
Sbjct: 184 SHDQTFTVKCTVAGLNSPIIGRGKSRRRAEQRTAKQALE 222


>gi|317009322|gb|ADU79902.1| ribonuclease III [Helicobacter pylori India7]
          Length = 239

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 120/221 (54%), Gaps = 8/221 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y  LEK +GY+F ++ LLE+ALTH S   +     ERLEFLGD +LGL+I  LL++ F  
Sbjct: 18  YIMLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 75

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VS    +++A+ + L  ++RVSS           SI +   E+L+A 
Sbjct: 76  YDEGKLSKLRASIVSVHGFTKLAKAIALQDYLRVSSSEEVSNGREKPSILSSAFEALMAG 135

Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +YL+ G+    ++    +++ +K+  L+      D KT LQE   A+F V P Y++    
Sbjct: 136 VYLEAGLAKVHKIMQNLLNRAYKRLDLEH--LFMDYKTALQELTQAQFCVIPTYQLLKEK 193

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           GPDH   F + + I     A     SK+ AEQ  A + L++
Sbjct: 194 GPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQK 234


>gi|307245400|ref|ZP_07527488.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|306853741|gb|EFM85958.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
          Length = 243

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 84/226 (37%), Positives = 120/226 (53%), Gaps = 8/226 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ ++   L+K++GY F N   L +ALTH S      ++ ERLEFLGD IL   I   LF
Sbjct: 18  MNNMQLERLQKKLGYQFTNLDYLLQALTHRSAGA---KNNERLEFLGDSILNFAIGKALF 74

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELS    +LV  +T + +AR+  L  ++++ +   K       SI +D VE
Sbjct: 75  EKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVE 134

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRAL---KSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           ++IAA+YLD G++ A   V   W Q  L   K G  ++D KT LQE+   +    P Y+V
Sbjct: 135 AIIAAIYLDAGMDKAIEQVH-LWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEV 193

Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKR 222
               G  H+  F V  +I  L     G+  S+R AEQ AA +VL +
Sbjct: 194 LDIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAK 239


>gi|291454392|ref|ZP_06593782.1| ribonuclease III [Streptomyces albus J1074]
 gi|291357341|gb|EFE84243.1| ribonuclease III [Streptomyces albus J1074]
          Length = 265

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 80/219 (36%), Positives = 120/219 (54%), Gaps = 6/219 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           +A  ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L
Sbjct: 18  TASSHTLLEGRLGYHLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 76

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +       EG+L+    ++V++   ++V+R L+L SFIR+             SI AD +
Sbjct: 77  YRTHPDLPEGQLAKLRAAVVNSRALAEVSRGLELGSFIRLGRGEEGTGGRDKASILADTL 136

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD G+E AG  V + +     KS       D KT LQE    +    PEY V
Sbjct: 137 EAVIGAVYLDQGLEAAGELVHRLFDPLIEKSSSLGAGLDWKTSLQELTATEGLGVPEYLV 196

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           T  +GPDH+  FT    + G++   G   SK+ AEQ AA
Sbjct: 197 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 234


>gi|32266198|ref|NP_860230.1| ribonuclease III [Helicobacter hepaticus ATCC 51449]
 gi|81666107|sp|Q7VIA9|RNC_HELHP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|32262248|gb|AAP77296.1| ribonuclease III [Helicobacter hepaticus ATCC 51449]
          Length = 240

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 75/216 (34%), Positives = 112/216 (51%), Gaps = 4/216 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LEK++GY F N+ LL +ALTH S    Y    ERLEFLGD +L LL+   LF  F  AKE
Sbjct: 13  LEKKLGYVFQNQQLLLEALTHKSCKKQYNN--ERLEFLGDAVLDLLVGEYLFKKFPLAKE 70

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELS     +V+ +   ++A+ LDL +++ +S     +      SI ++  E+LI A+YL
Sbjct: 71  GELSKLRACIVNEKGFMKLAQSLDLGAYLYISQSEENNNGRQKASILSNAFEALIGAIYL 130

Query: 129 DGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           +  +    + +    +   +K        D KT LQE   A +G  P Y +   SGPDH 
Sbjct: 131 ESSLTYVQSIIYDLLEYNYIKIDLDSLFMDYKTALQEITQAFYGEIPTYTLISESGPDHK 190

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             F + + + G   A+    SK+ A+Q +A    K+
Sbjct: 191 KSFEIALSVQGKEYARASGNSKKEAQQKSAQIAYKK 226


>gi|269468620|gb|EEZ80264.1| dsRNA-specific ribonuclease [uncultured SUP05 cluster bacterium]
          Length = 221

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 120/221 (54%), Gaps = 14/221 (6%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE++I Y F + SLL+ ALTH S+    + + ERLEFLGD ILGL+IS  L+  F    E
Sbjct: 4   LEQKIDYQFKDISLLKLALTHRSVG---KNNNERLEFLGDSILGLVISRELYKRFTHVDE 60

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS   + LV  +T +Q+A  LDL++ + + S   K       SIQADVVE++  A++L
Sbjct: 61  GKLSRLRSHLVRGQTLAQLASTLDLSNILILGSGELKSGGFRRESIQADVVEAIFGAVFL 120

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D   +   T + K +K+R   +      +D KT+LQE+   +    P+Y++    G DH+
Sbjct: 121 DSDFDTVNTVILKLYKERLDIINPNDSLKDFKTQLQEYLQKRGNALPKYELIKTVGKDHN 180

Query: 187 PRFTVVVEISGLAPAQGMDCSKRA-----AEQVAAAEVLKR 222
             FT+   +      Q M   ++A     AEQ  A  +L R
Sbjct: 181 AVFTINCSLQD----QNMKVKQKATSIKRAEQSCAQALLDR 217


>gi|47168737|pdb|1RC7|A Chain A, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex
           Aeolicus Complexed With Ds-Rna At 2.15 Angstrom
           Resolution
          Length = 220

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 82/218 (37%), Positives = 122/218 (55%), Gaps = 14/218 (6%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LEK++GY F ++SLLEKALTH  +S+S +E YE LEFLGD ++   I  LL  +  + +E
Sbjct: 7   LEKKLGYTFKDKSLLEKALTH--VSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKRE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G LS     L+S E  + +A++L+L  FIR+             +I  DV ++L AA+Y+
Sbjct: 65  GFLSPLKAYLISEEFFNLLAQKLELHKFIRIKR------GKINETIIGDVFKALWAAVYI 118

Query: 129 DGGIEVAGT--FVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           D G +   T     K +K+    A+K G+ ++D KT LQE    ++   PEY++    GP
Sbjct: 119 DSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISVEGP 178

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            H  +F V  +I       G   SK+ AEQ AA E++K
Sbjct: 179 HHKKKFIVEAKIKEYRTL-GEGKSKKEAEQRAAEELIK 215


>gi|148827174|ref|YP_001291927.1| ribonuclease III [Haemophilus influenzae PittGG]
 gi|189043320|sp|A5UFI8|RNC_HAEIG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|148718416|gb|ABQ99543.1| ribonuclease III [Haemophilus influenzae PittGG]
          Length = 227

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 85/222 (38%), Positives = 121/222 (54%), Gaps = 15/222 (6%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE++IGY F + +LL++ALTH S +  + E   RLEFLGD IL   I+  L++ F    E
Sbjct: 7   LERKIGYRFNDIALLKQALTHRSAATQHNE---RLEFLGDSILNFTIAEALYHQFPRCNE 63

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELS    +LV   T + +AR+ +L  ++ + S   K+      SI AD VE++I A+ L
Sbjct: 64  GELSRMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVEAIIGAMSL 123

Query: 129 DGGIEVAGTFVDKYWKQRAL---KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           D G+ V  T V + W Q+ L   K G  ++DAKT LQE+   K    P Y+V    G  H
Sbjct: 124 DQGLAVT-TQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPLPTYEVVNIQGEAH 182

Query: 186 DPRFTVVVEISGLAP------AQGMDCSKRAAEQVAAAEVLK 221
              FTV  ++           A+G   S+R AEQ AA ++LK
Sbjct: 183 CQIFTVECKVKSAGKIDRTFVAKG--SSRRKAEQAAAEQILK 222


>gi|90101637|sp|Q3IDL2|RNC_PSEHT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
          Length = 225

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 80/217 (36%), Positives = 118/217 (54%), Gaps = 5/217 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L K I Y FA++ LLE+A+TH S  H  Q + ERLEFLGD IL  +I+  L+  F  A
Sbjct: 6   TELYKTIDYIFADQGLLEQAMTHRS--HKGQHN-ERLEFLGDSILSFVIANALYAKFPKA 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +EG+LS   ++LV  +T ++   E  L  ++R+     K       S  AD VE++I A+
Sbjct: 63  REGDLSRMRSTLVRGQTLAEFGLEFGLGDYLRLGPGELKSGGFRRESTLADAVEAIIGAV 122

Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           +LD  IE  G  +  ++++R  A+  G  ++D KT LQE   A+    P Y V    G  
Sbjct: 123 FLDSDIERCGELILSWYEERLNAISPGLNQKDPKTLLQEHLQARKLSLPGYTVVDTKGQA 182

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           H+  FTV   + G+     +  S+R AEQ AA + LK
Sbjct: 183 HNQTFTVECIVDGMDSIISVGSSRRKAEQKAAEKALK 219


>gi|169632753|ref|YP_001706489.1| ribonuclease III [Acinetobacter baumannii SDF]
 gi|238688259|sp|B0VTM5|RNC_ACIBS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|169151545|emb|CAP00312.1| ribonuclease III, ds RNA [Acinetobacter baumannii]
          Length = 230

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/213 (36%), Positives = 115/213 (53%), Gaps = 5/213 (2%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71
           RIGY F    LL+ ALTH S+SH Y  +YERLEFLGD +LG++I+  L++ +    EG L
Sbjct: 16  RIGYQFKQPELLQLALTHRSVSHKY--NYERLEFLGDSLLGMIIANYLYHAYPHENEGRL 73

Query: 72  SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131
           +    +LV  E   ++A +L L+  + +S+   K       SI AD VE++I A+YLD  
Sbjct: 74  TRMRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRESILADTVEAIIGAIYLDSS 133

Query: 132 -IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
            + +    V K++      ++     +D K+ LQE+  A+    P Y+V    G      
Sbjct: 134 DLNLLKDIVLKWYTPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQH 193

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           F V   + GL+   G   S+R AEQ AAAE+LK
Sbjct: 194 FKVECLVDGLSKIHGEGASRRFAEQAAAAEILK 226


>gi|15603994|ref|NP_220509.1| ribonuclease III [Rickettsia prowazekii str. Madrid E]
 gi|6226018|sp|Q9ZE31|RNC_RICPR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|3860685|emb|CAA14586.1| RIBONUCLEASE III (rnc) [Rickettsia prowazekii]
          Length = 225

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 115/221 (52%), Gaps = 5/221 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61
           +  LE  +GY+F N+ LL +AL+H S+     + Y + YERLEFLGD +L LLI+ +LF 
Sbjct: 4   FEKLETLLGYSFKNKELLIEALSHPSLRQYHEYKYDKDYERLEFLGDAVLNLLITEILFK 63

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +F++ KEG L+   + LV  ET   V  +L L  +I ++            +   +  E+
Sbjct: 64  NFENYKEGNLAKIRSYLVCKETICIVGTKLALKDYIIMTHGEEVAGGRDNPNNIENATEA 123

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           LIAA+YLD  IE+    ++K W +          D KT LQEWA A     P Y++  R 
Sbjct: 124 LIAAIYLDSNIEITHNIIEKLWAEFMKVQNLTDYDPKTALQEWAQANSHHLPIYRLIKRE 183

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           G  H   FTV+V++           S + AE+ AA  +L R
Sbjct: 184 GAAHSSIFTVLVKVKDYEQT-CTGYSIKEAEKKAARSLLHR 223


>gi|90109239|pdb|2EZ6|A Chain A, Crystal Structure Of Aquifex Aeolicus Rnase Iii (D44n)
           Complexed With Product Of Double-Stranded Rna Processing
 gi|90109240|pdb|2EZ6|B Chain B, Crystal Structure Of Aquifex Aeolicus Rnase Iii (D44n)
           Complexed With Product Of Double-Stranded Rna Processing
          Length = 221

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 82/218 (37%), Positives = 122/218 (55%), Gaps = 14/218 (6%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LEK++GY F ++SLLEKALTH  +S+S +E YE LEFLG+ ++   I  LL  +  + +E
Sbjct: 7   LEKKLGYTFKDKSLLEKALTH--VSYSKKEHYETLEFLGNALVNFFIVDLLVQYSPNKRE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G LS     L+S E  + +A++L+L  FIR+             +I  DV E+L AA+Y+
Sbjct: 65  GFLSPLKAYLISEEFFNLLAQKLELHKFIRIKR------GKINETIIGDVFEALWAAVYI 118

Query: 129 DGGIEVAGT--FVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           D G +   T     K +K+    A+K G+ ++D KT LQE    ++   PEY++    GP
Sbjct: 119 DSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISVEGP 178

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            H  +F V  +I       G   SK+ AEQ AA E++K
Sbjct: 179 HHKKKFIVEAKIKEYRTL-GEGKSKKEAEQRAAEELIK 215


>gi|220931875|ref|YP_002508783.1| Ribonuclease III [Halothermothrix orenii H 168]
 gi|219993185|gb|ACL69788.1| Ribonuclease III [Halothermothrix orenii H 168]
          Length = 236

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 77/214 (35%), Positives = 111/214 (51%), Gaps = 6/214 (2%)

Query: 17  FANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           F + SLL+KA+TH S  H       E  ERLEFLGD +L ++IST L+ +F    EGEL+
Sbjct: 21  FNDISLLQKAVTHKSFVHEKSDPDLEDNERLEFLGDSVLSIVISTYLYKNFPEYNEGELA 80

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                +VS+   +  AREL L  +I +      +      SI AD +E++I A+YLD G 
Sbjct: 81  KMRAYIVSSSHLACKARELGLGKYILMGKGEELNGGRERESILADTLEAVIGAIYLDQGF 140

Query: 133 EVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
                 +  ++K   + L  G   RD KT LQE+         +Y +    GPDH+ +F 
Sbjct: 141 NTITDLLINFFKDDVKKLDQGNIIRDYKTYLQEFIQKDGSCEIKYNIINEYGPDHNKKFE 200

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           V V+++G    +G   SK+ AEQ AA + L   G
Sbjct: 201 VGVKVNGKELGRGTGFSKKEAEQKAAKDALSNLG 234


>gi|83753758|pdb|1YYO|A Chain A, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex
           Aeolicus Complexed With Double-Stranded Rna At 2.9-
           Angstrom Resolution
 gi|83753759|pdb|1YYO|B Chain B, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex
           Aeolicus Complexed With Double-Stranded Rna At 2.9-
           Angstrom Resolution
          Length = 221

 Score =  122 bits (305), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 82/218 (37%), Positives = 122/218 (55%), Gaps = 14/218 (6%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LEK++GY F ++SLLEKALTH  +S+S +E YE LEFLGD ++   I  LL  +  + +E
Sbjct: 7   LEKKLGYTFKDKSLLEKALTH--VSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKRE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G LS     L+S E  + +A++L+L  FIR+             +I  DV ++L AA+Y+
Sbjct: 65  GFLSPLKAYLISEEFFNLLAQKLELHKFIRIKR------GKINETIIGDVFKALWAAVYI 118

Query: 129 DGGIEVAGT--FVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           D G +   T     K +K+    A+K G+ ++D KT LQE    ++   PEY++    GP
Sbjct: 119 DSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISVEGP 178

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            H  +F V  +I       G   SK+ AEQ AA E++K
Sbjct: 179 HHKKKFIVEAKIKEYRTL-GEGKSKKEAEQRAAEELIK 215


>gi|239982550|ref|ZP_04705074.1| ribonuclease III [Streptomyces albus J1074]
          Length = 260

 Score =  122 bits (305), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 80/219 (36%), Positives = 120/219 (54%), Gaps = 6/219 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           +A  ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L
Sbjct: 13  TASSHTLLEGRLGYHLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 71

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +       EG+L+    ++V++   ++V+R L+L SFIR+             SI AD +
Sbjct: 72  YRTHPDLPEGQLAKLRAAVVNSRALAEVSRGLELGSFIRLGRGEEGTGGRDKASILADTL 131

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD G+E AG  V + +     KS       D KT LQE    +    PEY V
Sbjct: 132 EAVIGAVYLDQGLEAAGELVHRLFDPLIEKSSSLGAGLDWKTSLQELTATEGLGVPEYLV 191

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           T  +GPDH+  FT    + G++   G   SK+ AEQ AA
Sbjct: 192 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 229


>gi|169795096|ref|YP_001712889.1| ribonuclease III [Acinetobacter baumannii AYE]
 gi|239501066|ref|ZP_04660376.1| ribonuclease III [Acinetobacter baumannii AB900]
 gi|260556582|ref|ZP_05828800.1| ribonuclease III [Acinetobacter baumannii ATCC 19606]
 gi|301345824|ref|ZP_07226565.1| ribonuclease III [Acinetobacter baumannii AB056]
 gi|301512403|ref|ZP_07237640.1| ribonuclease III [Acinetobacter baumannii AB058]
 gi|301594764|ref|ZP_07239772.1| ribonuclease III [Acinetobacter baumannii AB059]
 gi|332851055|ref|ZP_08433164.1| ribonuclease III [Acinetobacter baumannii 6013150]
 gi|332869696|ref|ZP_08438884.1| ribonuclease III [Acinetobacter baumannii 6013113]
 gi|332875945|ref|ZP_08443731.1| ribonuclease III [Acinetobacter baumannii 6014059]
 gi|238685526|sp|A3M7P2|RNC_ACIBT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|238688097|sp|B0VCU0|RNC_ACIBY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|169148023|emb|CAM85886.1| ribonuclease III, ds RNA [Acinetobacter baumannii AYE]
 gi|193078016|gb|ABO12936.2| ribonuclease III [Acinetobacter baumannii ATCC 17978]
 gi|260409841|gb|EEX03141.1| ribonuclease III [Acinetobacter baumannii ATCC 19606]
 gi|332730219|gb|EGJ61544.1| ribonuclease III [Acinetobacter baumannii 6013150]
 gi|332732598|gb|EGJ63831.1| ribonuclease III [Acinetobacter baumannii 6013113]
 gi|332735811|gb|EGJ66852.1| ribonuclease III [Acinetobacter baumannii 6014059]
          Length = 230

 Score =  122 bits (305), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/213 (36%), Positives = 115/213 (53%), Gaps = 5/213 (2%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71
           RIGY F    LL+ ALTH S+SH Y  +YERLEFLGD +LG++I+  L++ +    EG L
Sbjct: 16  RIGYQFKQPELLQLALTHRSVSHKY--NYERLEFLGDSLLGMIIANYLYHAYPHENEGRL 73

Query: 72  SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131
           +    +LV  E   ++A +L L+  + +S+   K       SI AD VE++I A+YLD  
Sbjct: 74  TRMRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRESILADTVEAIIGAIYLDSS 133

Query: 132 -IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
            + +    V K++      ++     +D K+ LQE+  A+    P Y+V    G      
Sbjct: 134 DLNLLKDIVLKWYTPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQH 193

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           F V   + GL+   G   S+R AEQ AAAE+LK
Sbjct: 194 FKVECLVDGLSKIHGEGSSRRFAEQAAAAEILK 226


>gi|167751472|ref|ZP_02423599.1| hypothetical protein EUBSIR_02468 [Eubacterium siraeum DSM 15702]
 gi|167655280|gb|EDR99409.1| hypothetical protein EUBSIR_02468 [Eubacterium siraeum DSM 15702]
 gi|291557094|emb|CBL34211.1| RNAse III [Eubacterium siraeum V10Sc8a]
          Length = 226

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 87/228 (38%), Positives = 121/228 (53%), Gaps = 11/228 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFDS 65
           + LE+ IGY F N  LL++ALTHSS ++  +  S ERLEFLGD +L +++S  LF +  +
Sbjct: 2   TELEQIIGYTFKNPELLKEALTHSSYTNGKHLRSNERLEFLGDSVLSIVVSEHLFENLTN 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+L+    S+V        AR++DL  +I +             SI AD  E+LIAA
Sbjct: 62  LPEGQLTKIRASVVCENALYPFARKIDLGKYIFLGKGEEHTGGRDRHSILADAFEALIAA 121

Query: 126 LYLDGGIEVAGTFVDKYWKQ-RALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTF---- 179
           +YLDGG E A +F+  +      L +GKF   D KT LQE         PE +VT+    
Sbjct: 122 IYLDGGFEAARSFILPFIPPLDKLSTGKFLLGDYKTVLQEIIQQ----NPEERVTYEISD 177

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
            SG  H+ +FT  V ++G     G   SK+ AEQ AA E +   G  T
Sbjct: 178 ESGQAHNKQFTANVLLNGQIIGTGKGKSKKEAEQSAAKEAISLMGYET 225


>gi|300724126|ref|YP_003713443.1| RNase III, ds RNA [Xenorhabdus nematophila ATCC 19061]
 gi|297630660|emb|CBJ91325.1| RNase III, ds RNA [Xenorhabdus nematophila ATCC 19061]
          Length = 226

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 122/225 (54%), Gaps = 6/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+A+  + L+ ++GY F    LL +ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 1   MNAILTNRLQHKLGYTFTQHDLLLQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD +E
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGHRRESILADSIE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI A++LD  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGAIFLDSDIQTIEKIILNWYETRLNEISPGDKQKDPKTRLQEYLQGRHLPLPTYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222
              G  HD  FT+  ++SG   P +G+  S+R AEQ AA + LK+
Sbjct: 178 QVRGEAHDQEFTIHCQVSGFEQPVRGVGSSRRKAEQAAAEQALKQ 222


>gi|192359963|ref|YP_001983041.1| ribonuclease III [Cellvibrio japonicus Ueda107]
 gi|190686128|gb|ACE83806.1| ribonuclease III [Cellvibrio japonicus Ueda107]
          Length = 225

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/224 (36%), Positives = 120/224 (53%), Gaps = 6/224 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M  L+Y  LE+R+GY+F ++  L+ ALTH S   S   + ERLEFLGD IL  LI   LF
Sbjct: 1   MINLKYQRLEQRLGYSFNDQRQLQLALTHRSHGAS---NNERLEFLGDSILNFLIGEALF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
              D A+EG++S   + LV  +T +++ARE +L   + +     K       SI AD VE
Sbjct: 58  LRLDEAREGQMSRLRSQLVRGDTLAELAREFELGECLVLGEGELKSGGHRRDSILADAVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YL+ G++     V  ++  R  A+      +D K+ LQE+  A+    PEY+V 
Sbjct: 118 AIIGAIYLESGLDTCRERVLAWYGDRLDAISLDTSAKDPKSRLQEYLQAQRQPLPEYRVV 177

Query: 179 FRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLK 221
              G  H   FT+   ++      Q    S+R AE+ AAA +LK
Sbjct: 178 EVGGEGHAQVFTIECHVAIAKQSTQAQASSRREAEKQAAAAMLK 221


>gi|319774962|ref|YP_004137450.1| Ribonuclease III [Haemophilus influenzae F3047]
 gi|329123136|ref|ZP_08251706.1| ribonuclease III [Haemophilus aegyptius ATCC 11116]
 gi|317449553|emb|CBY85758.1| Ribonuclease III [Haemophilus influenzae F3047]
 gi|327471691|gb|EGF17133.1| ribonuclease III [Haemophilus aegyptius ATCC 11116]
          Length = 227

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 85/222 (38%), Positives = 120/222 (54%), Gaps = 15/222 (6%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE++IGY F +  LL++ALTH S +  + E   RLEFLGD IL   I+  L++ F    E
Sbjct: 7   LERKIGYCFNDIVLLKQALTHRSAATQHNE---RLEFLGDSILNFTIAEALYHQFPRCNE 63

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELS    +LV   T + +AR+ +L  ++ + S   K+      SI AD VE++I A+ L
Sbjct: 64  GELSRMRATLVRESTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVEAIIGAMSL 123

Query: 129 DGGIEVAGTFVDKYWKQRAL---KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           D G+ V  T V + W Q+ L   K G  ++DAKT LQE+   K    P Y+V    G  H
Sbjct: 124 DQGLAVT-TQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPLPTYEVINIQGEAH 182

Query: 186 DPRFTVVVEISGLAP------AQGMDCSKRAAEQVAAAEVLK 221
              FTV  ++           A+G   S+R AEQ AA ++LK
Sbjct: 183 CQIFTVKCKVKSAGKIDRTFVAKG--SSRRKAEQAAAEQILK 222


>gi|319896432|ref|YP_004134625.1| ribonuclease iii [Haemophilus influenzae F3031]
 gi|317431934|emb|CBY80282.1| Ribonuclease III [Haemophilus influenzae F3031]
          Length = 227

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 85/222 (38%), Positives = 120/222 (54%), Gaps = 15/222 (6%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE++IGY F +  LL++ALTH S +  + E   RLEFLGD IL   I+  L++ F    E
Sbjct: 7   LERKIGYCFNDIVLLKQALTHRSAATQHNE---RLEFLGDSILNFTIAEALYHQFPRCNE 63

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELS    +LV   T + +AR+ +L  ++ + S   K+      SI AD VE++I A+ L
Sbjct: 64  GELSRMRATLVRESTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVEAIIGAMSL 123

Query: 129 DGGIEVAGTFVDKYWKQRAL---KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           D G+ V  T V + W Q+ L   K G  ++DAKT LQE+   K    P Y+V    G  H
Sbjct: 124 DQGLAVT-TQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPLPTYEVVNIQGEAH 182

Query: 186 DPRFTVVVEISGLAP------AQGMDCSKRAAEQVAAAEVLK 221
              FTV  ++           A+G   S+R AEQ AA ++LK
Sbjct: 183 CQIFTVECKVKSAGKIDRTFVAKG--SSRRKAEQAAAEQILK 222


>gi|260220751|emb|CBA28629.1| Ribonuclease 3 [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 224

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 85/219 (38%), Positives = 121/219 (55%), Gaps = 8/219 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L++R+ + F+N SLL +ALTH S S  +   YERLEFLGD +LGL IS LL++   + 
Sbjct: 2   TALQQRLQHQFSNVSLLSRALTHRSFSADH---YERLEFLGDSVLGLAISDLLYSRLGNL 58

Query: 67  KEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
            EG+LS VR N LV  ET  Q+A +L L   +++     +       SI AD +E++I A
Sbjct: 59  PEGDLSRVRAN-LVRQETLHQLALKLGLPDVLKLGEGEMRSGGPKRASILADALEAIIGA 117

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YLD G   A   V + ++   +        +DAKTELQEW   +    P Y V    G 
Sbjct: 118 VYLDAGFAKAQALVHRLFEAVEINPQMQAIGKDAKTELQEWLQGRKMKLPLYTVVGTIGA 177

Query: 184 DHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLK 221
            H   F V  E+  L  ++ G+  S+RA EQ AAA +L+
Sbjct: 178 AHKQSFDVECEVPELRLSERGIGGSRRAGEQAAAAAMLQ 216


>gi|184159116|ref|YP_001847455.1| ribonuclease III [Acinetobacter baumannii ACICU]
 gi|183210710|gb|ACC58108.1| dsRNA-specific ribonuclease [Acinetobacter baumannii ACICU]
          Length = 234

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 78/213 (36%), Positives = 115/213 (53%), Gaps = 5/213 (2%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71
           RIGY F    LL+ ALTH S+SH Y  +YERLEFLGD +LG++I+  L++ +    EG L
Sbjct: 20  RIGYQFKQPELLQLALTHRSVSHKY--NYERLEFLGDSLLGMIIANYLYHAYPHENEGRL 77

Query: 72  SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131
           +    +LV  E   ++A +L L+  + +S+   K       SI AD VE++I A+YLD  
Sbjct: 78  TRMRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRESILADTVEAIIGAIYLDSS 137

Query: 132 -IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
            + +    V K++      ++     +D K+ LQE+  A+    P Y+V    G      
Sbjct: 138 DLNLLKDIVLKWYTPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQH 197

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           F V   + GL+   G   S+R AEQ AAAE+LK
Sbjct: 198 FKVECLVDGLSKIHGEGSSRRFAEQAAAAEILK 230


>gi|298381809|ref|ZP_06991408.1| LOW QUALITY PROTEIN: ribonuclease III [Escherichia coli FVEC1302]
 gi|298279251|gb|EFI20765.1| LOW QUALITY PROTEIN: ribonuclease III [Escherichia coli FVEC1302]
          Length = 215

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 78/217 (35%), Positives = 120/217 (55%), Gaps = 6/217 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L++++GY F ++ LL++ALTH S S  + E   RLEFLGD IL  +I+  L++ F    E
Sbjct: 1   LQRKLGYTFNHQELLQQALTHRSASSKHNE---RLEFLGDSILSYVIANALYHRFPRVDE 57

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G++S    +LV   T +++ARE +L   +R+     K       SI AD VE+LI  ++L
Sbjct: 58  GDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRRESILADTVEALIGGVFL 117

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V    G  HD
Sbjct: 118 DSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPTYLVVQVRGEAHD 177

Query: 187 PRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222
             FT+  ++SGL+ P  G   S+R AEQ AA + LK+
Sbjct: 178 QEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQALKK 214


>gi|332525373|ref|ZP_08401536.1| ribonuclease III [Rubrivivax benzoatilyticus JA2]
 gi|332108645|gb|EGJ09869.1| ribonuclease III [Rubrivivax benzoatilyticus JA2]
          Length = 241

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 79/220 (35%), Positives = 121/220 (55%), Gaps = 6/220 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           R+  L++R+G+ F   +L+ +ALTH S      E  ERLEFLGD +L   +S LL+  F 
Sbjct: 4   RHDALQQRLGHRFTRTALMTRALTHRSWG---AEHNERLEFLGDSVLNCAVSALLYERFS 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            + EG+L+     LV  ++  +VA  L L+  +R+S    +   +   SI AD VE+LI 
Sbjct: 61  GSDEGDLTRVRAHLVREDSLHRVALTLGLSEVLRMSEGEMRGGGAQRPSILADAVEALIG 120

Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A++LDGG + A   V + + +   A ++  + +DAKTELQEW  A+    P Y++    G
Sbjct: 121 AIFLDGGFDPALATVRRLFGEVIAATEADAWSKDAKTELQEWLQARRLPVPAYRIVATRG 180

Query: 183 PDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLK 221
             H   F V   ++ L  A+ G   S+R AEQ AA  +L+
Sbjct: 181 EKHAQTFEVECAVATLGLAERGEGRSRRTAEQEAARRLLE 220


>gi|54297783|ref|YP_124152.1| ribonuclease III [Legionella pneumophila str. Paris]
 gi|148359410|ref|YP_001250617.1| ribonuclease III [Legionella pneumophila str. Corby]
 gi|296107456|ref|YP_003619157.1| ribonuclease III [Legionella pneumophila 2300/99 Alcoy]
 gi|81370372|sp|Q5X446|RNC_LEGPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043325|sp|A5ID21|RNC_LEGPC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|53751568|emb|CAH12986.1| hypothetical protein lpp1834 [Legionella pneumophila str. Paris]
 gi|148281183|gb|ABQ55271.1| ribonuclease III [Legionella pneumophila str. Corby]
 gi|295649358|gb|ADG25205.1| ribonuclease III [Legionella pneumophila 2300/99 Alcoy]
          Length = 224

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 79/217 (36%), Positives = 119/217 (54%), Gaps = 6/217 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L +R+ Y F N + L++ALTH S      ++YER EFLGD IL  +I+  LFN F    E
Sbjct: 8   LCRRLNYHFNNIAYLKQALTHCSAG---SDNYERFEFLGDSILSFVIANELFNRFPLHSE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS   + LV  E  +++ARE+ L  ++ +     +      TSI AD +E+++AA+YL
Sbjct: 65  GQLSRLRSFLVKGEMLAEIAREIGLGDYLFLGQGELRSGGFRRTSILADALEAILAAIYL 124

Query: 129 DGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           DGG+  A   +   +  R          +DAKT+LQE+  A     PEY +T   G +H 
Sbjct: 125 DGGMTAAKQIILMLYSSRLDDPDLNHCLKDAKTQLQEFLQASKFALPEYVLTKIEGDEHA 184

Query: 187 PRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKR 222
             F V   I G++  A G   ++R AEQ+AA  +L++
Sbjct: 185 QIFHVTCTIEGVSQVAYGTGPNRRKAEQLAAKAMLEQ 221


>gi|292571710|gb|ADE29625.1| Ribonuclease III [Rickettsia prowazekii Rp22]
          Length = 225

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 115/221 (52%), Gaps = 5/221 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61
           +  LE  +GY+F N+ LL +AL+H S+     + Y + YERLEFLGD +L LLI+ +LF 
Sbjct: 4   FEKLETLLGYSFKNKELLIEALSHPSLRQYHEYKYDKDYERLEFLGDAVLNLLITEILFK 63

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +F++ KEG L+   + LV  ET   V  +L L  +I ++            +   +  E+
Sbjct: 64  NFENYKEGNLAKIRSYLVCKETICIVGTKLALKDYIIMTHGEEVAGGRDNPNNIENATEA 123

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           LIAA+YLD  IE+    ++K W +          D KT LQEWA A     P Y++  R 
Sbjct: 124 LIAAIYLDSNIEITHNIIEKLWAEFMKVQNFTDYDPKTALQEWAQANSHHLPIYRLIKRE 183

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           G  H   FTV+V++           S + AE+ AA  +L R
Sbjct: 184 GAAHSSIFTVLVKVKDYEQT-CTGYSIKEAEKKAARSLLHR 223


>gi|217970713|ref|YP_002355947.1| ribonuclease III [Thauera sp. MZ1T]
 gi|217508040|gb|ACK55051.1| ribonuclease III [Thauera sp. MZ1T]
          Length = 222

 Score =  121 bits (304), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 82/211 (38%), Positives = 112/211 (53%), Gaps = 6/211 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L+ R+G+AF++  LL++ALTH S     Q + ER EFLGD +L  ++S  LF  F   +E
Sbjct: 5   LQARLGHAFSDVRLLQEALTHRSFG---QPNNERFEFLGDAVLDCVVSIALFGRFGELRE 61

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELS    SLV  +T  ++A EL+L   +R+     K   S   SI AD +E+L AA+YL
Sbjct: 62  GELSRVRASLVRQDTLHRLALELELGDCLRLGEGELKSGGSRRPSILADALEALFAAVYL 121

Query: 129 DGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D G E A   +D+ +      +   K  +D KT LQEW  A+    P Y +    G  H 
Sbjct: 122 DAGFEAAKGVIDRLYAPLIAEVDPCKPSKDPKTALQEWLQARRIPVPSYTMVEIVGEAHA 181

Query: 187 PRFTVVVEISGLA-PAQGMDCSKRAAEQVAA 216
             F V  EI  LA    G   S+R AEQ +A
Sbjct: 182 QEFEVACEIPKLAVRTLGRGPSRRIAEQQSA 212


>gi|212710663|ref|ZP_03318791.1| hypothetical protein PROVALCAL_01729 [Providencia alcalifaciens DSM
           30120]
 gi|212686744|gb|EEB46272.1| hypothetical protein PROVALCAL_01729 [Providencia alcalifaciens DSM
           30120]
          Length = 226

 Score =  121 bits (304), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 118/224 (52%), Gaps = 6/224 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+      L++++GY F    LL +ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 1   MNPSLLEKLQRKLGYTFKQNDLLIQALTHRSASSKHNE---RLEFLGDSILSFVIANDLY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPKVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  ++K R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGIFLDSDIQTIEKIILAWYKARLDEISPGDKQKDPKTRLQEYLQGRHLPLPNYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLK 221
              G  HD  FT+  ++SG+  P  G+  S+R AEQ AA + LK
Sbjct: 178 LVKGEAHDQEFTIHCQVSGIEEPIHGIGSSRRKAEQAAAEQALK 221


>gi|291530279|emb|CBK95864.1| RNAse III [Eubacterium siraeum 70/3]
          Length = 226

 Score =  121 bits (304), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 87/228 (38%), Positives = 120/228 (52%), Gaps = 11/228 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFDS 65
           + LE+ IGY F N  LL++ALTHSS ++  +  S ERLEFLGD +L +++S  LF +  +
Sbjct: 2   TELEQIIGYTFKNPELLKEALTHSSYTNGKHLRSNERLEFLGDSVLSIVVSEHLFENLTN 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+L+    S+V        AR++DL  +I +             SI AD  E+LIAA
Sbjct: 62  LPEGQLTKIRASVVCENALYPFARKIDLGKYIFLGKGEEHTGGRDRHSILADAFEALIAA 121

Query: 126 LYLDGGIEVAGTFVDKYWKQ-RALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTF---- 179
           +YLDGG E A  F+  +      L +GKF   D KT LQE         PE +VT+    
Sbjct: 122 IYLDGGFEAARNFILPFIPPLDKLSTGKFLLGDYKTVLQEIIQQ----NPEERVTYEISD 177

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
            SG  H+ +FT  V ++G     G   SK+ AEQ AA E +   G  T
Sbjct: 178 ESGQAHNKQFTANVLLNGQIIGTGKGKSKKEAEQSAAKEAISLMGYET 225


>gi|160900693|ref|YP_001566275.1| ribonuclease III [Delftia acidovorans SPH-1]
 gi|238687167|sp|A9BNJ5|RNC_DELAS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|160366277|gb|ABX37890.1| Ribonuclease III [Delftia acidovorans SPH-1]
          Length = 227

 Score =  121 bits (304), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 87/220 (39%), Positives = 119/220 (54%), Gaps = 10/220 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L+ R+ + FA  +LL++A+TH S S    ++ ERLEFLGD +L L IS+LL+    S 
Sbjct: 6   NALQLRLQHQFAEPALLQRAVTHRSFS---ADNNERLEFLGDSVLNLAISSLLYQRLSSM 62

Query: 67  KEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
            EG+LS VR N LV   T  Q+A  L L   +R+     K       SI AD VE+LI A
Sbjct: 63  PEGDLSRVRAN-LVKEGTLHQIALRLQLPDLLRLGEGESKSGGKQRPSILADAVEALIGA 121

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +YLD G   AG  V  +  +    +   R   +DAKT LQEW   +    P+Y+V   +G
Sbjct: 122 VYLDAGY-AAGEKVVHHLFEGVDINPHMRAAEKDAKTALQEWLQGRRMKLPQYEVVATTG 180

Query: 183 PDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221
             H   F V   I+ L   A+G   S+RAAEQ AA  +L+
Sbjct: 181 AAHRQTFEVACAIAELQLQARGTGASRRAAEQTAATAMLE 220


>gi|254468787|ref|ZP_05082193.1| ribonuclease III [beta proteobacterium KB13]
 gi|207087597|gb|EDZ64880.1| ribonuclease III [beta proteobacterium KB13]
          Length = 228

 Score =  121 bits (304), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 83/220 (37%), Positives = 117/220 (53%), Gaps = 6/220 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M  L    LE  + Y F + +LL+K+LTH S      E+ ERLEFLGD IL   I+  LF
Sbjct: 1   MDDLIVKQLEDLLQYKFKDINLLQKSLTHRSFDG---ENNERLEFLGDSILNFTIAEALF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F +  EG+LS    SLV + T +++A ++ L  FI +     K       SI AD  E
Sbjct: 58  IKFPNIPEGDLSRLRASLVKSGTLAEIAVKIKLGDFIFLGEGELKSAGWRRPSILADTFE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I ALYLDGG+  A TF+ +Y++     +   K  +D KT LQE   +K  + P+Y+V 
Sbjct: 118 AIIGALYLDGGLRPAQTFIHQYFQDWLSEINPAKVDKDPKTSLQELLQSKKLMLPKYEVA 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAA 217
              G  H   F V   I+ L+   +    S+RAAEQ AA+
Sbjct: 178 DIKGEAHAQEFIVKCNIAQLSITTEASGSSRRAAEQEAAS 217


>gi|225570731|ref|ZP_03779754.1| hypothetical protein CLOHYLEM_06832 [Clostridium hylemonae DSM
           15053]
 gi|225160474|gb|EEG73093.1| hypothetical protein CLOHYLEM_06832 [Clostridium hylemonae DSM
           15053]
          Length = 231

 Score =  121 bits (304), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 83/213 (38%), Positives = 110/213 (51%), Gaps = 7/213 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS-----HSYQESYERLEFLGDRILGLLISTLLFNHF 63
           LEKRIGY F    LL+KA+ HSS +     H Y E  ERLEFLGD +L L+ S  LF   
Sbjct: 8   LEKRIGYTFKEFGLLKKAMMHSSYANEQHLHKY-ECNERLEFLGDAVLELVSSEFLFYEH 66

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EGEL+    S+V     +  AREL +  F+ +             SI +D +E+LI
Sbjct: 67  AKMPEGELTKTRASMVCEPALAFCARELQIGDFLLLGKGEDATGGRKRESITSDAMEALI 126

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            A+Y+DGG   A  F++++   + L++ K   D+KT LQE   A F     Y +    GP
Sbjct: 127 GAIYIDGGFANAKEFIERFI-LKDLENRKLFFDSKTILQEIVQANFKDAITYHLIGEEGP 185

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           DHD  F V V I       G   +K+AAEQ AA
Sbjct: 186 DHDKSFLVAVHIGEDEYGIGRGRTKKAAEQEAA 218


>gi|147678073|ref|YP_001212288.1| ribonuclease III [Pelotomaculum thermopropionicum SI]
 gi|189043329|sp|A5D1H6|RNC_PELTS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|146274170|dbj|BAF59919.1| dsRNA-specific ribonuclease [Pelotomaculum thermopropionicum SI]
          Length = 241

 Score =  121 bits (304), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 118/224 (52%), Gaps = 6/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           + + L+ R+G A+ +  LL +ALTHSS ++  +    E+ +RLEFLGD +L L +S  L+
Sbjct: 7   KLTLLKNRLGIAWRDEGLLTRALTHSSFTYENRQNGLENNQRLEFLGDAVLELAVSDYLY 66

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                  EG+L+    S+V   + ++VAREL+L + + +     +       SI AD  E
Sbjct: 67  RSKPEMDEGDLTKLRASVVCEPSLARVARELELGTCLYMGKGEERSGGRDRPSILADAFE 126

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +L+ A+YLD G+E A     KY       +  G+  RD KTELQE    + G   +Y + 
Sbjct: 127 ALLGAVYLDQGLEKAAGLAIKYLAPLIGDVLEGRLERDYKTELQELVQQRGGEQVQYVIL 186

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              GPDH   FT  V   G+   QG   SK+ AEQ AA + L +
Sbjct: 187 KEEGPDHHKSFTAGVLYRGVLVGQGTGRSKKEAEQQAAKKALMK 230


>gi|319779260|ref|YP_004130173.1| Ribonuclease III [Taylorella equigenitalis MCE9]
 gi|317109284|gb|ADU92030.1| Ribonuclease III [Taylorella equigenitalis MCE9]
          Length = 251

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 82/223 (36%), Positives = 123/223 (55%), Gaps = 10/223 (4%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++   L+K++ Y+F +  LL +ALTH S S ++ E   RLEFLGD IL   +++LLF   
Sbjct: 1   MKLDELQKKLNYSFKDIKLLNRALTHRSFSSTHNE---RLEFLGDSILNFSVASLLFKKL 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+L+    S V+ +T +++A  L L   I++     K       SI AD VE++ 
Sbjct: 58  KDQAEGDLTRIRASYVNQDTLAKIANNLKLQDLIKLGEGELKSGGFKRPSILADAVEAIF 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFR 180
            A+Y+D  IE A   V+  + +  +K+  F    RD+KT LQE+  AK    P YKV   
Sbjct: 118 GAIYIDSNIEQAQKVVESIY-EPLMKNVDFSTVGRDSKTLLQEFVQAKRVPLPSYKVLNI 176

Query: 181 SGPDHDPRFTV--VVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +G  HD  F V   VE+  ++ AQ +  S+R+AEQ AA  VL+
Sbjct: 177 TGAAHDQEFEVECTVELFDVS-AQAVGASRRSAEQAAATLVLE 218


>gi|157964181|ref|YP_001499005.1| ribonuclease III [Rickettsia massiliae MTU5]
 gi|189043342|sp|A8F0M2|RNC_RICM5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|157843957|gb|ABV84458.1| Ribonuclease III [Rickettsia massiliae MTU5]
          Length = 227

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 120/223 (53%), Gaps = 9/223 (4%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQES--YERLEFLGDRILGLLISTLLFN 61
           + TLEK + Y+F N+ LL +AL+H S+   H Y++   YERLEFLGD +L L+I+ +LF 
Sbjct: 4   FETLEKLLSYSFKNKELLIEALSHPSLRQHHEYKDDKDYERLEFLGDAVLNLVITEILFR 63

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA--DVV 119
           +F +  EG L+   + LV  ET   V  +L L ++I ++    ++V     ++    +  
Sbjct: 64  NFANYNEGHLAKIRSYLVCKETICMVGAKLTLKNYIIMTHG--EEVAGGRDNLNNIENAT 121

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E+LIAA+YLD  IE     ++K W +          D KT LQEWA A     P Y++  
Sbjct: 122 EALIAAIYLDSNIETTYDIIEKLWAEFIKVQNLTDYDPKTALQEWAQASDHHLPIYRLIK 181

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           R G  H   FTV+V++       G   + + AE+ AA  +L R
Sbjct: 182 REGASHSSTFTVLVKVKDYEQT-GTGHAIKEAEKNAARSLLHR 223


>gi|307132118|ref|YP_003884134.1| RNase III [Dickeya dadantii 3937]
 gi|306529647|gb|ADM99577.1| RNase III [Dickeya dadantii 3937]
          Length = 226

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 121/225 (53%), Gaps = 6/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L+K++GY F    LL +ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 1   MNPILINRLQKKLGYTFQQYDLLLQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     + ++++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSNIQTVERLILQWYQTRLDEISPGDKQKDPKTRLQEFLQGRHLPLPTYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222
              G  HD  FT+  ++SG + P  G   S+R AEQ AA + LK+
Sbjct: 178 QVRGEAHDQEFTIHCQVSGFSEPVVGTGSSRRKAEQAAAEQALKK 222


>gi|331005223|ref|ZP_08328616.1| Ribonuclease III [gamma proteobacterium IMCC1989]
 gi|330420966|gb|EGG95239.1| Ribonuclease III [gamma proteobacterium IMCC1989]
          Length = 217

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 85/211 (40%), Positives = 114/211 (54%), Gaps = 6/211 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L+KRI Y F++ SLLE ALTH S S +   + ERLEFLGD +LG+ IS  LF  F   KE
Sbjct: 10  LQKRIDYQFSDESLLETALTHRSFSST---NNERLEFLGDSLLGVTISQQLFEQFPDVKE 66

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G LS + + LV   T + +ARE  L+ ++ + S   K       SI AD VE++I A++L
Sbjct: 67  GILSRQRSRLVKGVTLAALAREFSLSDYLIMGSGELKSGGFRRDSILADTVEAIIGAIFL 126

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D  I+     + +++  R   L S    +D KT LQE   +K    P Y V    G  H+
Sbjct: 127 DSDIQQCQKVILQWFHDRLQGLSSHDQLKDPKTRLQELLQSKKKPLPTYTVANIEGASHE 186

Query: 187 PRFTVVVEISGLAPA-QGMDCSKRAAEQVAA 216
            RFTV   I+ L  A      S+R AEQ AA
Sbjct: 187 QRFTVDCGIALLDTAVTATAGSRRQAEQQAA 217


>gi|325661266|ref|ZP_08149893.1| ribonuclease III [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325472773|gb|EGC75984.1| ribonuclease III [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 259

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 81/216 (37%), Positives = 112/216 (51%), Gaps = 5/216 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLLFNHFD 64
           + K+IGY F  + LL+KA+ HSS ++      Q+  ERLEFLGD +L L  S  LF    
Sbjct: 37  IRKKIGYTFQKKELLQKAMMHSSYTNEKHMKKQDCNERLEFLGDAVLELTTSEALFFDNP 96

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           S  EGEL+    S+V     + VA+EL L S++ +             SI +D VE+LI 
Sbjct: 97  SMPEGELTKTRASIVCEPALAFVAKELMLGSYLLLGKGEEATGGRQRDSITSDAVEALIG 156

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A+YLDGG   A  F+ K+     L++ K   D+KT LQE   AKF     Y +    GPD
Sbjct: 157 AIYLDGGFASAKEFIQKFI-LSDLENKKLFYDSKTILQEMVQAKFTENVRYVLEKEEGPD 215

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           H+  FT    I       G   +K+A+EQ AA + +
Sbjct: 216 HNKSFTTSAYIGEECYGTGSGRTKKASEQEAAYQTI 251


>gi|209695943|ref|YP_002263873.1| ribonuclease III [Aliivibrio salmonicida LFI1238]
 gi|208009896|emb|CAQ80209.1| ribonuclease III (RNase III) [Aliivibrio salmonicida LFI1238]
          Length = 223

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 74/211 (35%), Positives = 114/211 (54%), Gaps = 6/211 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE++IGY F +   L+ ALTH S + ++ E   RLEFLGD IL  +++  L++ F    E
Sbjct: 8   LERKIGYKFNDEGFLKLALTHRSANGTHNE---RLEFLGDSILSFVVADELYHRFPKVDE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G++S    +LV   T +++ RE +L  ++ +     K       SI AD VE++I  +YL
Sbjct: 65  GDMSRMRATLVRGHTLAELGREFELGDYLFLGPGELKSGGFRRDSILADAVEAIIGGIYL 124

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D   EV    +  ++K R  +++ G  ++D KT LQE+   +    P Y VT   G  H+
Sbjct: 125 DSDTEVIRRIILAWYKTRLDSIEPGISQKDPKTRLQEYLQGRRKPLPTYTVTKIKGEAHN 184

Query: 187 PRFTVVVEISGL-APAQGMDCSKRAAEQVAA 216
             FT+   ++GL  P  G   S+R AEQ AA
Sbjct: 185 QEFTIECIVAGLDKPVIGKGSSRRKAEQSAA 215


>gi|152989964|ref|YP_001355686.1| ribonuclease III [Nitratiruptor sp. SB155-2]
 gi|189043328|sp|A6Q1H0|RNC_NITSB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|151421825|dbj|BAF69329.1| ribonuclease III [Nitratiruptor sp. SB155-2]
          Length = 226

 Score =  121 bits (303), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 69/189 (36%), Positives = 110/189 (58%), Gaps = 8/189 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            EK++GY+F ++ LL++ALTH S         ERLEFLGD +L L++   LF  F  A E
Sbjct: 7   FEKKLGYSFEDKKLLKEALTHKSYKSPVNN--ERLEFLGDAVLDLVVGEYLFKKFPKANE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELS    SLV+ E  +++A++LD+  +I +S     +      S+ ++  E+++ A+YL
Sbjct: 65  GELSKLRASLVNEEGFAKLAQKLDIGKYIFISQAEENNQGRTKPSLLSNAFEAVMGAIYL 124

Query: 129 DGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           + G+    E++   +++ + +  L S    +D KT LQE+  A +G+TP YK+   SGPD
Sbjct: 125 EKGLEKVRELSLKLLEEAYPKIDLDS--LFKDFKTALQEFTQAHYGITPTYKLLGSSGPD 182

Query: 185 HDPRFTVVV 193
           H   F V V
Sbjct: 183 HKKEFEVAV 191


>gi|302670933|ref|YP_003830893.1| ribonuclease III Rnc [Butyrivibrio proteoclasticus B316]
 gi|302395406|gb|ADL34311.1| ribonuclease III Rnc [Butyrivibrio proteoclasticus B316]
          Length = 230

 Score =  121 bits (303), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 81/217 (37%), Positives = 116/217 (53%), Gaps = 5/217 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLLFNHF 63
             ++ IGY F N  LL +ALTHSS  +    + +  YERLEFLGD IL ++ S  LF  +
Sbjct: 9   NFQQVIGYKFKNIDLLIQALTHSSFVNEQKINKKPDYERLEFLGDAILEMVSSEYLFKKY 68

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
              KEGE+S    SLV     +  A  ++L  +I++             SI ADV+E++I
Sbjct: 69  PDKKEGEMSKIRASLVCEPALAFCAEHIELKKYIQLGKGEELTGGRNKESIIADVMEAVI 128

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            AL+LDGG++ +  F+D Y    A     F  D+K+ LQE+  A      +Y++   SGP
Sbjct: 129 GALFLDGGLQESKRFIDTYVLTNADSMAMF-NDSKSLLQEFVQAGGLGQIKYEICGESGP 187

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +HD  F V V I      +G   +K+AAEQ AA + L
Sbjct: 188 EHDKIFDVRVWIGDKNMGEGTGKTKKAAEQKAAYQAL 224


>gi|262373078|ref|ZP_06066357.1| ribonuclease III [Acinetobacter junii SH205]
 gi|262313103|gb|EEY94188.1| ribonuclease III [Acinetobacter junii SH205]
          Length = 232

 Score =  121 bits (303), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 122/223 (54%), Gaps = 5/223 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           + L  + L+ RIG+ F    LL+ ALTH S+SH +  +YERLEFLGD +LG++I+  L++
Sbjct: 8   NKLNDARLQNRIGHQFQQFDLLKLALTHRSVSHKH--NYERLEFLGDSLLGMIIANYLYH 65

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +    EG L+    +LV  E   ++A +L L+  + +S+   K       SI AD VE+
Sbjct: 66  TYPKENEGRLTRMRATLVRQEALGKIANDLQLSRSLILSTGELKSGGHHRESILADTVEA 125

Query: 122 LIAALYLDGG-IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +I A+YLD   + +  + V K+++     ++     +D K+ LQE+  A+    P Y+V 
Sbjct: 126 IIGAIYLDSNDLNLLQSIVLKWYEPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVV 185

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              G   +  F V   + G+    G   S+R AEQ AAAE+LK
Sbjct: 186 DIQGDAPNQHFKVECNVEGMPKFIGEGSSRRFAEQTAAAEILK 228


>gi|109899454|ref|YP_662709.1| ribonuclease III [Pseudoalteromonas atlantica T6c]
 gi|109701735|gb|ABG41655.1| RNAse III [Pseudoalteromonas atlantica T6c]
          Length = 227

 Score =  121 bits (303), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 81/219 (36%), Positives = 116/219 (52%), Gaps = 6/219 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y  L  ++GY F +   L  ALTH S+  ++ E   RLEFLGD +LGL+I+  LF  F  
Sbjct: 7   YKPLYTKLGYEFQDPKNLTVALTHRSVGANHNE---RLEFLGDAVLGLVIAKALFERFPK 63

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG L+   +SLV  +T ++VARE  L   + +     K       SI AD VE++I A
Sbjct: 64  QPEGNLTRMRSSLVKGDTLAEVAREFSLGDLLLLGPGELKSGGHRRDSILADAVEAIIGA 123

Query: 126 LYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +Y + G++     +  ++ +R  AL      +D KT LQE+   +    PEY+V   SG 
Sbjct: 124 IYQEVGMQGCEPLILAWFAKRIDALNPDATPKDDKTRLQEYLQGRQLPLPEYEVIDISGK 183

Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221
            HD  FTV   +SGL+ P  G   S+R AEQ  A + L+
Sbjct: 184 SHDQTFTVQCTVSGLSKPIIGRGKSRRRAEQRTAKQALE 222


>gi|332296458|ref|YP_004438381.1| Ribonuclease 3 [Thermodesulfobium narugense DSM 14796]
 gi|332179561|gb|AEE15250.1| Ribonuclease 3 [Thermodesulfobium narugense DSM 14796]
          Length = 228

 Score =  121 bits (303), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 120/219 (54%), Gaps = 9/219 (4%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFN 61
           +  S LE+ +GY F N+  L  +LTHSS S+++ E   +ERLEFLGD +L L++S  LF 
Sbjct: 5   INLSKLEEDLGYVFTNKKWLMTSLTHSSYSYNHPEVKDFERLEFLGDAVLKLVVSHKLFV 64

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +    EG++S     LVS +  +++A++L+L +++ + S  R    +   SI +   E+
Sbjct: 65  LYPEMSEGDMSKLRAYLVSDKHLTKIAKKLNLQNYLLIGSSER----TIKDSILSASFEA 120

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           ++ A+Y+D  ++     +DK      +K  ++  D+KT LQE   + FGV PEYKV    
Sbjct: 121 ILGAVYMDSSLKQCYKIIDKLMN---IKIEEYEEDSKTVLQELTQSLFGVLPEYKVIDVR 177

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           GP H P F V + I           SK+ A+  AA + L
Sbjct: 178 GPSHSPIFEVQLSIDNKFFYTATGSSKKQAQSEAAKKAL 216


>gi|189043297|sp|A8Z6F6|RNC_CAMC1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|158604915|gb|ABW74738.1| ribonuclease III [Campylobacter concisus 13826]
          Length = 223

 Score =  121 bits (303), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 120/217 (55%), Gaps = 8/217 (3%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           E+ +GY F    LLE+ALTH S   +   + ERLEFLGD ++ LL++  LF  F    EG
Sbjct: 8   ERNLGYKFKKSELLEEALTHKSTKQAL--NNERLEFLGDAVMDLLVAEYLFKKFSKIAEG 65

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           ++S    +LV+ ++ + +AR L +  F+R+S     +      SI +D  E+++ A+YL+
Sbjct: 66  DMSKLRAALVNEKSFANMARRLKMGEFLRLSQAEENNGGREKDSILSDAFEAVMGAIYLE 125

Query: 130 GGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
            G+    E++ + ++  + Q  +      +D KT LQE   A  GV P Y++    GPDH
Sbjct: 126 AGLLKVREISISLLELCYPQ--IDFAHLEKDYKTALQEVTQATLGVIPTYELIGSFGPDH 183

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              F + + ++G   ++ +  SK+ A+Q+AA   L++
Sbjct: 184 KKEFEIALLLNGKEISRAVGSSKKQAQQLAAKIALEK 220


>gi|162449970|ref|YP_001612337.1| ribonuclease III [Sorangium cellulosum 'So ce 56']
 gi|161160552|emb|CAN91857.1| ribonuclease III [Sorangium cellulosum 'So ce 56']
          Length = 275

 Score =  121 bits (303), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 76/194 (39%), Positives = 105/194 (54%), Gaps = 7/194 (3%)

Query: 23  LEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           LE+ALTH S S+  +       +RLEFLGD +LGL ++ LL   F  A+EGELS+  ++L
Sbjct: 21  LEEALTHPSFSNEQRGGRRVDNQRLEFLGDAVLGLCVTELLMERFPGAREGELSMMRSAL 80

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138
           V+ +  +  AR ++L + +RV            T++ AD  E+L+AALYLD G E A   
Sbjct: 81  VNTDALAAWARGIELGAALRVGRGAEVAGERDQTNVLADATEALVAALYLDRGFESARAL 140

Query: 139 VDKYWKQR--ALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
             K        L SG    RDAK+ELQE   A+   +P Y++    GPDHD  F V VE+
Sbjct: 141 SRKIAASPLAQLASGSLLGRDAKSELQERVQARGAASPRYRLMGTEGPDHDRAFLVAVEV 200

Query: 196 SGLAPAQGMDCSKR 209
            G     G   SK+
Sbjct: 201 DGQVIGTGRGRSKK 214


>gi|219685563|ref|ZP_03540380.1| ribonuclease III [Borrelia garinii Far04]
 gi|219672962|gb|EED29984.1| ribonuclease III [Borrelia garinii Far04]
          Length = 246

 Score =  121 bits (303), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 78/212 (36%), Positives = 114/212 (53%), Gaps = 9/212 (4%)

Query: 17  FANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           F N  LL  AL+HSS S+   +   + ERLEFLGD +L L+I+  L+  + +  EGELS 
Sbjct: 30  FNNFDLLNTALSHSSYSNELDQKADNNERLEFLGDSVLNLIITDHLYKTYPNKSEGELSK 89

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
             + +VS ++ S VARE++L S+I +      +       I AD +E+ + A+YLD G  
Sbjct: 90  ARSYIVSEDSLSSVAREIELGSYILLGRGEESNDGRNKKGILADAIEAFVGAIYLDSGFS 149

Query: 134 VAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
           +A  FV    D Y +      G F +D K+ LQE+   K+ ++P YK+    GPDHD  F
Sbjct: 150 MATEFVVGLFDMYIR-LMFNRGDF-KDYKSLLQEYVQKKYKISPSYKLDKEIGPDHDKVF 207

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V + +     + G   SK+ AE  AA   LK
Sbjct: 208 CVELYVGEKFISNGKGKSKKEAEMRAAEVALK 239


>gi|255281054|ref|ZP_05345609.1| ribonuclease III [Bryantella formatexigens DSM 14469]
 gi|255268502|gb|EET61707.1| ribonuclease III [Bryantella formatexigens DSM 14469]
          Length = 230

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 76/215 (35%), Positives = 119/215 (55%), Gaps = 6/215 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESY----ERLEFLGDRILGLLISTLLFNH 62
           S LE+  GY+F ++ LLE AL HSS ++ +++ +    ERLEFLGD +L L  S  L+ H
Sbjct: 6   SELEQMTGYSFKDKELLENALRHSSYANEHKKYHLKDNERLEFLGDAVLELSSSEYLYRH 65

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +   KEGE++    S+V   T +Q A  ++L SF+R+     +       S+ +D +E+L
Sbjct: 66  YPKMKEGEMTKLRASIVCEPTLAQCAAAIELGSFLRLGRGEEQTGGRHRDSVVSDAMEAL 125

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKF-GVTPEYKVTFRS 181
           I A++LDGG   A  FV+++     ++  K   D+KT LQE   + + G    Y +    
Sbjct: 126 IGAIFLDGGFTSAKEFVNRFILN-GVEHKKLFFDSKTILQEIVQSSYKGEAMSYHLLREE 184

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           GP+HD  F V + I      +G   +K++AEQ AA
Sbjct: 185 GPEHDKTFVVQLFIGDKGFEEGRGRTKKSAEQEAA 219


>gi|120555160|ref|YP_959511.1| ribonuclease III [Marinobacter aquaeolei VT8]
 gi|120325009|gb|ABM19324.1| RNAse III [Marinobacter aquaeolei VT8]
          Length = 229

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 79/220 (35%), Positives = 116/220 (52%), Gaps = 6/220 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L++RIGY F     L  ALTH S  +   ++ ERLEFLGD I+ ++I+  L+ HF+ A+E
Sbjct: 10  LQRRIGYQFKEPERLLLALTHRSFGN---QNNERLEFLGDSIVNMVIAEYLYLHFEKARE 66

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS     +V   T +++ RE  L  ++R+ S   K       SI AD VES+I A+YL
Sbjct: 67  GQLSRLRARMVKGVTLAEIGREFQLGQYLRLGSGELKSGGFRRESILADAVESIIGAIYL 126

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D         V ++++QR   L     ++D KT LQE+  ++    P Y+V    G  H+
Sbjct: 127 DSDFHTCRAQVLRWFEQRLANLDIQDTQKDPKTRLQEYLQSRQFPLPRYEVISVDGEAHN 186

Query: 187 PRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225
             F V   +  L     G   S+R AEQ AA   LK+ G+
Sbjct: 187 QTFHVSCALPSLDRKTTGTGSSRRVAEQQAARNALKQLGV 226


>gi|32490945|ref|NP_871199.1| hypothetical protein WGLp196 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|30173145|sp|Q8D305|RNC_WIGBR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|25166151|dbj|BAC24342.1| rnc [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 226

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 119/223 (53%), Gaps = 6/223 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M  L ++ L+K++GY F N  +L++ALTH S S    ++ ERLEFLGD IL  +IS  L+
Sbjct: 1   MKNLFFNKLQKKMGYLFHNNIILKQALTHRSFS---SKNNERLEFLGDSILNYIISDALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N+F +  EG+LS   + LV   T +++ARE  L  ++ +     K       SI ++ +E
Sbjct: 58  NNFTNIPEGKLSQMRSYLVRGNTLAEIAREFCLGDYLILGIGEVKTGGKNRDSILSNAME 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I  ++LD  I      V  ++K R  ++     ++D KT LQE+        P+Y + 
Sbjct: 118 AIIGGIFLDSNINKTHEIVISWYKNRLYSMSLKNLKKDPKTRLQEYLQGNKFSLPQYYIK 177

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVL 220
             +G  H+  FT+   I  L  +  G   ++R AEQ AA + L
Sbjct: 178 NITGESHNQEFTICCFIDDLKKSVIGYGKTRRKAEQSAAKQAL 220


>gi|330828482|ref|YP_004391434.1| ribonuclease III [Aeromonas veronii B565]
 gi|328803618|gb|AEB48817.1| Ribonuclease III [Aeromonas veronii B565]
          Length = 223

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 77/209 (36%), Positives = 112/209 (53%), Gaps = 6/209 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++ + L+ R+G+ FA+  LL +ALTH S    + E   RLEFLGD IL L+I+  LF+ F
Sbjct: 3   IKMNRLQSRLGHVFADLELLTRALTHRSAGSRHNE---RLEFLGDSILSLVIADDLFHRF 59

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EG+LS    +LV  +T +++ RE DL   + +     K       SI AD VE++I
Sbjct: 60  PQAAEGDLSRMRATLVREKTLAELGREFDLGDHLILGPGELKSGGFRRESILADTVEAVI 119

Query: 124 AALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+YLD  +E   T +  ++  R   +K G  ++D KT LQE         P Y VT   
Sbjct: 120 GAVYLDTNLETVRTLLLSWYASRLEEIKPGIEQKDPKTRLQEILQGSRKSLPTYTVTNVK 179

Query: 182 GPDHDPRFTVVVEISGL-APAQGMDCSKR 209
           G  H+  FTV  ++ GL  P  G+  S+R
Sbjct: 180 GEAHNQEFTVQCDVEGLDGPLVGVGTSRR 208


>gi|313896309|ref|ZP_07829862.1| ribonuclease III [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320529287|ref|ZP_08030377.1| ribonuclease III [Selenomonas artemidis F0399]
 gi|312975108|gb|EFR40570.1| ribonuclease III [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320138461|gb|EFW30353.1| ribonuclease III [Selenomonas artemidis F0399]
          Length = 238

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 87/233 (37%), Positives = 129/233 (55%), Gaps = 10/233 (4%)

Query: 1   MSALRYSTLEK---RIGYAFANRSLLEKALTHSSISHSYQESY---ERLEFLGDRILGLL 54
           +S  R + LE+    +G AF+N +LL++ALTH S ++  ++S    ERLEFLGD +L L 
Sbjct: 5   LSPARRAELERLAAHMGVAFSNIALLDEALTHPSYANESRDSIPHNERLEFLGDAVLELA 64

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS-SDLRKDVCSFMTS 113
            ST L+ HF    EGEL+    SLV ++T +++AR L L   +R+   +LR        +
Sbjct: 65  SSTYLYKHFPQCSEGELTKMRASLVQSDTLARLARRLHLGRHLRLGHGELRGGGADRQNN 124

Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGV 171
           ++ +V E++I A+YLD G E A  +V          ++  + R D KT LQE       +
Sbjct: 125 LE-NVFEAVIGAVYLDRGWESARDYVCTQLVPEIGNVQPAQVRCDYKTTLQEHVQKDRHM 183

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +  Y++   SGPDHD RFT  V + G    +G   SK+ AEQ AAA  L + G
Sbjct: 184 SVAYELVGESGPDHDKRFTTRVLVGGETLGEGTGPSKKKAEQQAAAHALSKLG 236


>gi|110834492|ref|YP_693351.1| ribonuclease III [Alcanivorax borkumensis SK2]
 gi|123345468|sp|Q0VP19|RNC_ALCBS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|110647603|emb|CAL17079.1| ribonuclease III [Alcanivorax borkumensis SK2]
          Length = 228

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 88/220 (40%), Positives = 116/220 (52%), Gaps = 9/220 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L  R+GY F + SLLE ALTH S+S     +YERLEFLGD  LG +IS  LF  F  A
Sbjct: 6   NRLMARLGYQFQDLSLLELALTHRSVSR--HRNYERLEFLGDAQLGQIISVALFEQFPEA 63

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+L+    SLV  +T + VAREL L  ++ +     K       SI AD +ES+I A+
Sbjct: 64  AEGQLTRMRASLVRGQTLALVARELGLGEYLVLGGGELKSGGFRRDSILADALESIIGAM 123

Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
            LDGG       V  ++  R  A+     ++DAKT LQEW  A+    P Y+VT   G  
Sbjct: 124 LLDGGEPRCREVVLAWFAPRLDAISPQSAQKDAKTRLQEWLQARKFELPTYEVTQVEGLA 183

Query: 185 HDPRFTVVVEISGLAP---AQGMDCSKRAAEQVAAAEVLK 221
               F V   +  +     AQG   S+R AEQ AA+  L+
Sbjct: 184 PKQTFDVQCSLDNVQQIFIAQG--ASRRKAEQEAASLALE 221


>gi|323499981|ref|ZP_08104937.1| ribonuclease III [Vibrio sinaloensis DSM 21326]
 gi|323314947|gb|EGA68002.1| ribonuclease III [Vibrio sinaloensis DSM 21326]
          Length = 225

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 111/206 (53%), Gaps = 6/206 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + LEK++GY F +  L+  ALTH S +  + E   RLEFLGD IL  +I+  L++ F   
Sbjct: 6   AKLEKKLGYQFNDAELIGLALTHRSANGKHNE---RLEFLGDSILSFVIADDLYHRFPKV 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG++S    +LV   T +++ RE +L   +++     K       SI AD VE++I A+
Sbjct: 63  NEGDMSRMRATLVRGNTLAELGREFELGDHLKLGPGELKSGGFRRDSILADAVEAIIGAI 122

Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD  IE     +  ++K R  A+K G  ++D KT LQE+   +    P Y VT   G  
Sbjct: 123 YLDSDIEEVRRIILSWYKTRLDAIKPGVSQKDPKTRLQEFLQGRRKPLPAYTVTNIKGEA 182

Query: 185 HDPRFTVVVEISGLA-PAQGMDCSKR 209
           H+  FTV  E++G+  P  G   S+R
Sbjct: 183 HNQEFTVSCEVAGIGQPVIGKGTSRR 208


>gi|253988786|ref|YP_003040142.1| ribonuclease III [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253780236|emb|CAQ83397.1| ribonuclease III [Photorhabdus asymbiotica]
          Length = 226

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 121/225 (53%), Gaps = 6/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F    LL +ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFDQHDLLIQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGYRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     + ++++ R   +  G  ++D KT LQE+        P Y V 
Sbjct: 118 ALIGGIFLDSDIQTVERTILRWYETRLNEISPGDKQKDPKTRLQEYLQGHHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222
              G  HD  FT+  ++SG+  P +G   S+R AEQ AA + LK+
Sbjct: 178 MVRGEAHDQEFTIHCQVSGIEQPVKGTGSSRRKAEQAAAEQALKQ 222


>gi|163783627|ref|ZP_02178616.1| RNase III [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881120|gb|EDP74635.1| RNase III [Hydrogenivirga sp. 128-5-R1-1]
          Length = 222

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/223 (36%), Positives = 125/223 (56%), Gaps = 13/223 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES-YERLEFLGDRILGLLISTLLFNHFD 64
           +  +E+RIGY F N+ LL++A TH S +     S YE LEFLGD +L  +I  +L   F 
Sbjct: 2   FEEVEERIGYTFKNKDLLKQAFTHVSYARDAGVSHYEILEFLGDALLNFIIVDILVKEFP 61

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             +EG L+     L+S E  +++A+ELDL  +I +S   +K+V     SI  DV E+L A
Sbjct: 62  EKREGALASLKAYLISEEFFNELAQELDLPRYILMSRG-KKNV-----SIIGDVFEALWA 115

Query: 125 ALYLDGG--IEVAGTFVDKYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           A+Y+D G    +     ++ +K R    ++S + R+D KT LQE    ++   P Y+V  
Sbjct: 116 AVYVDSGRDCNLVKELFNRLFKDRIIETIRSHRIRKDYKTMLQEITQKRWRERPHYRVIS 175

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             GP+H   FTV   I G++ A G   SK+ AEQ AA  ++++
Sbjct: 176 VEGPEHAKTFTVESSIKGVS-AVGRGKSKKEAEQEAAKRLVEK 217


>gi|119471905|ref|ZP_01614213.1| RNase III, ds RNA [Alteromonadales bacterium TW-7]
 gi|119445278|gb|EAW26568.1| RNase III, ds RNA [Alteromonadales bacterium TW-7]
          Length = 225

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/217 (35%), Positives = 116/217 (53%), Gaps = 5/217 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L  +IGY F+++ LLE+A+TH S  H  Q + ERLEFLGD IL  +I+  L+  F  A
Sbjct: 6   TELYNKIGYEFSDQGLLEQAMTHRS--HKGQHN-ERLEFLGDSILSFVIANALYAKFPKA 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +EG+LS   ++LV  +T ++   E  L  ++R+     K       S  AD VE++I A 
Sbjct: 63  REGDLSRMRSTLVRGQTLAEFGVEFGLGDYLRLGPGELKSGGFRRESTLADAVEAIIGAA 122

Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           +LD GIE     +  +++ R  A+  G  ++D KT LQE    +    P Y V    G  
Sbjct: 123 FLDSGIERCSELILSWYESRLDAISPGLNQKDPKTLLQEHLQGRKLPLPGYTVVDTKGQA 182

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           H+  FTV   + G+     +  S+R AEQ AA + LK
Sbjct: 183 HNQTFTVECIVDGMDSIISVGSSRRKAEQKAAEKALK 219


>gi|260771922|ref|ZP_05880840.1| ribonuclease III [Vibrio metschnikovii CIP 69.14]
 gi|260613214|gb|EEX38415.1| ribonuclease III [Vibrio metschnikovii CIP 69.14]
          Length = 204

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/203 (36%), Positives = 111/203 (54%), Gaps = 6/203 (2%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           +E ALTH S +  + E   RLEFLGD IL  +I+  L+  F    EG++S    +LV   
Sbjct: 1   MELALTHRSANGKHNE---RLEFLGDSILSFVIADELYRRFPKINEGDMSRMRATLVRGN 57

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
           T +++ RE  L  ++++     K       SI AD VE++I A+YLD  IE+A   +  +
Sbjct: 58  TLAELGREFGLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAIYLDSDIEMARGIILNW 117

Query: 143 WKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA- 199
           ++ R  A+K G  ++D KT LQE+   K    P Y VT   G  H+  FTV  +++G+A 
Sbjct: 118 YQPRLDAIKPGVSQKDPKTRLQEFLQGKRSPLPIYIVTNIKGEAHNQEFTVSCDVAGIAT 177

Query: 200 PAQGMDCSKRAAEQVAAAEVLKR 222
           P  G   S+R AEQ AA   L++
Sbjct: 178 PVIGKGTSRRKAEQAAAETALEQ 200


>gi|167037696|ref|YP_001665274.1| ribonuclease III [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|307264836|ref|ZP_07546398.1| ribonuclease III [Thermoanaerobacter wiegelii Rt8.B1]
 gi|320116111|ref|YP_004186270.1| ribonuclease III [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|326389510|ref|ZP_08211077.1| ribonuclease III [Thermoanaerobacter ethanolicus JW 200]
 gi|166856530|gb|ABY94938.1| Ribonuclease III [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|306920094|gb|EFN50306.1| ribonuclease III [Thermoanaerobacter wiegelii Rt8.B1]
 gi|319929202|gb|ADV79887.1| ribonuclease III [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|325994515|gb|EGD52940.1| ribonuclease III [Thermoanaerobacter ethanolicus JW 200]
          Length = 246

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/224 (37%), Positives = 125/224 (55%), Gaps = 5/224 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTLLFNHF 63
           S LEKRI Y+F +++LL +ALTHSS +H  + S    ERLEFLGD +L L+IS  L+ + 
Sbjct: 21  SELEKRINYSFKDKNLLIEALTHSSWAHEGKNSKISNERLEFLGDSVLSLVISEYLYKNR 80

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
              +EG LS     +V   + ++ ARE++L +F+R+             SI AD +E+++
Sbjct: 81  KDLEEGSLSKYRAEIVCEPSLARCAREIELGNFLRIGKGEELTGGRERDSILADAMEAIL 140

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+YLDGG+EV    + + +K     +  G   RD KT+LQE   +       Y++    
Sbjct: 141 AAVYLDGGLEVVRNVILELFKNIIEEVLEGLIYRDYKTKLQEVVQSMEIGKIIYELIEEM 200

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           GPDH+  F   V I  +   +G   SK+ AEQ AA E L + GI
Sbjct: 201 GPDHNKTFVTQVRIGDVILGKGYGKSKKEAEQAAAMEALIKLGI 244


>gi|197122613|ref|YP_002134564.1| ribonuclease III [Anaeromyxobacter sp. K]
 gi|196172462|gb|ACG73435.1| Ribonuclease III [Anaeromyxobacter sp. K]
          Length = 383

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/214 (35%), Positives = 114/214 (53%), Gaps = 8/214 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNH 62
             LE R+G A  +R     ALTH S  + ++E      ERLEFLGD ++ L +S  L   
Sbjct: 26  GALEARLGIAVTDRQAALAALTHKSYVNEHREDGLQDNERLEFLGDAVIDLAVSHRLMER 85

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F SA+EG+LS    ++V  +  + +AR LDL + +R+            +S+ AD +E++
Sbjct: 86  FPSAREGDLSKMRAAVVDEQGLAGMARALDLGTLLRLGRGEELTGGRQKSSLLADAMEAV 145

Query: 123 IAALYLDGGIEVAGTFVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           IAA+Y   G+     FVD++  +   RA  +G   RD KT+LQE + ++   TP Y+V  
Sbjct: 146 IAAVYQGQGLPAVLCFVDRFLGEAFARA-AAGTLDRDFKTQLQELSQSRLRATPRYRVVA 204

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
             GPDH   F V  ++ G    +G   SK+ AEQ
Sbjct: 205 EHGPDHSKTFEVETDLRGEVLGRGAGRSKKDAEQ 238


>gi|309972852|gb|ADO96053.1| RNase III, dsRNA [Haemophilus influenzae R2846]
          Length = 227

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/223 (38%), Positives = 121/223 (54%), Gaps = 17/223 (7%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE++IGY F + +LL+ ALTH S +  + E   RLEFLGD IL   I+  L++ F    E
Sbjct: 7   LERKIGYRFNDIALLKLALTHRSAATQHNE---RLEFLGDSILNFTIAEALYHQFPRCNE 63

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELS    +LV   T + +AR+ +L  ++ + S   K+      SI AD VE++I A+ L
Sbjct: 64  GELSRMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVEAIIGAMSL 123

Query: 129 DGGIEVAGTFVDKYWKQRAL---KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           D G+ V  T V + W Q+ L   K G  ++DAKT LQE+   K    P Y+V    G  H
Sbjct: 124 DQGLAVT-TQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPLPTYEVVNIQGEAH 182

Query: 186 DPRFTVVVEISGLAPAQGMD-------CSKRAAEQVAAAEVLK 221
              FTV  ++     A+ +D        S+R AEQ AA ++LK
Sbjct: 183 CQIFTVECKVKS---AEKIDRTFVAKGSSRRKAEQAAAEQILK 222


>gi|251788698|ref|YP_003003419.1| ribonuclease III [Dickeya zeae Ech1591]
 gi|247537319|gb|ACT05940.1| ribonuclease III [Dickeya zeae Ech1591]
          Length = 226

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 120/225 (53%), Gaps = 6/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L+K++GY F    LL +ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 1   MNPILINRLQKKLGYTFQQYDLLLQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSNIQTVERLILSWYQTRLDEISPGDKQKDPKTRLQEFLQGRHLPLPTYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222
              G  HD  FT+  ++SG + P  G   S+R AEQ AA + LK+
Sbjct: 178 QVRGEAHDQEFTIHCQVSGFSEPVVGTGSSRRKAEQAAAEQALKK 222


>gi|312143881|ref|YP_003995327.1| ribonuclease III [Halanaerobium sp. 'sapolanicus']
 gi|311904532|gb|ADQ14973.1| ribonuclease III [Halanaerobium sp. 'sapolanicus']
          Length = 238

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/205 (36%), Positives = 109/205 (53%), Gaps = 6/205 (2%)

Query: 18  ANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           +N+ LL++ALTH S  +  +    +  ERLEFLGD +L L +ST +FN F    EGEL+ 
Sbjct: 22  SNKKLLQRALTHKSFPNENKNLSIKDNERLEFLGDSVLSLAVSTYIFNKFSDFPEGELAK 81

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
               +VSA   ++ A++L+L  ++ +             SI AD +E++  ALYLD G  
Sbjct: 82  MRAVVVSAPILAEAAKKLELGRYLFLGKGEEMTGGRERDSILADSMEAIFGALYLDQGFT 141

Query: 134 VAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
            A  FV K  K+  + +  G   +D KT LQE       + PEY+V    GPDH+  F V
Sbjct: 142 AASDFVLKILKEDIKEVAMGNHIQDYKTMLQEIIQQDGNIRPEYEVIDEKGPDHNKTFIV 201

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAA 216
            V++   +   G   SK+ AEQ AA
Sbjct: 202 AVKLKENSLGSGQGSSKKEAEQEAA 226


>gi|439871|gb|AAA69690.1| ribonuclease [Coxiella burnetii]
          Length = 233

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 125/218 (57%), Gaps = 7/218 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L +R+G+ F N  LL+ ALTH S   S  ++ ERLEFLGD +LG +I++ L+     A
Sbjct: 5   NKLMERLGHQFNNLELLKIALTHCS---SGADNNERLEFLGDSVLGFIIASELYQRRPQA 61

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +EG+LS    S+V+ +  +Q++ +L +  ++++    +K       SI AD +E+++ A+
Sbjct: 62  REGDLSRMRASMVNGDELAQMSTKLGINEYLQLGVGEQKSGGKRRRSILADALETIVGAI 121

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           Y+D G+E     V  ++ +R     K   ++DAK+ LQEW  A+    P Y+V   +G  
Sbjct: 122 YIDAGLETCRRCVLNWYGERVDDLSKLSPKKDAKSLLQEWLQARRLPLPTYEVKI-TGEA 180

Query: 185 HDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221
           H   FTV   + GL    +G++ ++R AEQ+AA   L+
Sbjct: 181 HAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAKRFLE 218


>gi|95930677|ref|ZP_01313411.1| Ribonuclease III [Desulfuromonas acetoxidans DSM 684]
 gi|95133329|gb|EAT14994.1| Ribonuclease III [Desulfuromonas acetoxidans DSM 684]
          Length = 244

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/202 (34%), Positives = 111/202 (54%), Gaps = 5/202 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLFNH 62
           S  E+R+GY F +R  L+ AL H S ++          ER EFLGD +L L+++  LF  
Sbjct: 14  SQFEERLGYRFTDRHYLQTALIHKSYANEQLRDPAACNERQEFLGDAVLDLVMADYLFCT 73

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +    EGELS   + LVSA   ++VAR L+L   +++    R+       ++ AD +E++
Sbjct: 74  YPQLPEGELSRIRSELVSARALAKVARRLNLGPCLKLGRGERRSGGQDKDNLLADALEAV 133

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFRS 181
             A++LD G +VA   + + ++  A+++ + +  D KT  QE A A+FG  PEY++    
Sbjct: 134 FGAVFLDAGWDVARDVLGRMFEGTAVQAARRKSLDYKTRFQELAQARFGAAPEYELVATE 193

Query: 182 GPDHDPRFTVVVEISGLAPAQG 203
           GPDH   +TV+V   G    QG
Sbjct: 194 GPDHQREYTVIVSCEGRHLGQG 215


>gi|303233301|ref|ZP_07319972.1| ribonuclease III [Atopobium vaginae PB189-T1-4]
 gi|302480601|gb|EFL43690.1| ribonuclease III [Atopobium vaginae PB189-T1-4]
          Length = 229

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 113/221 (51%), Gaps = 3/221 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
           R   +++ + Y F++ +L + ALTH S         SYERLEFLGD ILG +I+  +F  
Sbjct: 6   RVCRVQEILDYTFSDITLAKAALTHPSAVEGQPVSASYERLEFLGDSILGAIIACDMFEQ 65

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L+    SLVS +T SQVA EL +A  I      R      M S   +V E+L
Sbjct: 66  FPDMDEGALTRMKTSLVSGQTLSQVADELGIAPLIVFGESERGTGTRGMHSALENVYEAL 125

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A+YLDGG +    F+ +   +  + +        K+ELQE++   +   P Y++   S
Sbjct: 126 VGAMYLDGGYDPTAAFIRRTLAEYMVPQRAAHPISPKSELQEFSQRIYHEMPVYELEEES 185

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           GP H P FT  V ++G    +G   SK+ ++  AA   L +
Sbjct: 186 GPAHLPHFTTAVYVNGELVGRGSGTSKKESQTQAAQAALDK 226


>gi|154707005|ref|YP_001423899.1| ribonuclease III [Coxiella burnetii Dugway 5J108-111]
 gi|165919331|ref|ZP_02219417.1| ribonuclease III [Coxiella burnetii RSA 334]
 gi|189043305|sp|A9KFA0|RNC_COXBN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|154356291|gb|ABS77753.1| ribonuclease III [Coxiella burnetii Dugway 5J108-111]
 gi|165916991|gb|EDR35595.1| ribonuclease III [Coxiella burnetii RSA 334]
          Length = 233

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 125/218 (57%), Gaps = 7/218 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L +R+G+ F N  LL+ ALTH S   S  ++ ERLEFLGD +LG +I++ L+     A
Sbjct: 5   NKLMERLGHQFNNLELLKIALTHRS---SGADNNERLEFLGDSVLGFIIASELYQRRPQA 61

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +EG+LS    S+V+ +  +Q++ +L +  ++++    +K       SI AD +E+++ A+
Sbjct: 62  REGDLSRMRASMVNGDELAQMSTKLGINEYLQLGVGEQKSGGKRRRSILADALEAIVGAI 121

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           Y+D G+E     V  ++ +R     K   ++DAK+ LQEW  A+    P Y+V   +G  
Sbjct: 122 YIDAGLETCRRCVLNWYGERVDDLSKLSPKKDAKSLLQEWLQARRLPLPTYEVKI-TGEA 180

Query: 185 HDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221
           H   FTV   + GL    +G++ ++R AEQ+AA   L+
Sbjct: 181 HAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAKRFLE 218


>gi|114320503|ref|YP_742186.1| ribonuclease III [Alkalilimnicola ehrlichii MLHE-1]
 gi|122311783|sp|Q0A8Z1|RNC_ALHEH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|114226897|gb|ABI56696.1| RNAse III [Alkalilimnicola ehrlichii MLHE-1]
          Length = 228

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/217 (36%), Positives = 117/217 (53%), Gaps = 6/217 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L+ R+GY F    LL++ALTH S++       ERLEFLGD IL  +I+  L++    A E
Sbjct: 8   LQDRLGYRFRRPELLDEALTHRSVTGP---DNERLEFLGDGILNFVIADELYHRRPDATE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G LS    +LV+  T +++ + LD+ + +R+     K       SI AD VE+L  A+YL
Sbjct: 65  GVLSRLRATLVNGRTLAEIGKGLDVGTALRLGGGEMKSGGQRRKSILADAVEALFGAIYL 124

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           DGG + +   + + ++ R  +L +    +D KT LQE   A     P Y+V   SG  HD
Sbjct: 125 DGGFDPSRETILRLYRDRLASLPTEAELKDPKTRLQEHLQAGRRPLPRYEVLEVSGQSHD 184

Query: 187 PRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222
             F V   +   A  A+G   S+R AEQ AA ++LKR
Sbjct: 185 QTFRVACRLQDAAVTAEGEAGSRRKAEQQAAEQMLKR 221


>gi|302537165|ref|ZP_07289507.1| ribonuclease III [Streptomyces sp. C]
 gi|302446060|gb|EFL17876.1| ribonuclease III [Streptomyces sp. C]
          Length = 273

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/219 (36%), Positives = 119/219 (54%), Gaps = 6/219 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           +A  ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L
Sbjct: 16  AASSHTLLEGRLGYQLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 74

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +       EG+L+    ++V++   ++V R L+L SFIR+             SI AD +
Sbjct: 75  YTTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTL 134

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD G++ A   V + +     KS       D KT LQE   A+    PEY V
Sbjct: 135 EAVIGAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTAAEGLGVPEYLV 194

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           T  +GPDH+  FT    + G++   G   SK+ AEQ AA
Sbjct: 195 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 232


>gi|295836307|ref|ZP_06823240.1| ribonuclease III [Streptomyces sp. SPB74]
 gi|295825949|gb|EFG64564.1| ribonuclease III [Streptomyces sp. SPB74]
          Length = 280

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/215 (36%), Positives = 118/215 (54%), Gaps = 6/215 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
           ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L+   
Sbjct: 46  HTLLEGRLGYHLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRAH 104

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+L+    ++V++   ++V+R LDL +FIR+             SI AD +E++I
Sbjct: 105 PDLPEGQLAKLRAAVVNSRALAEVSRGLDLGAFIRLGRGEEGTGGRDKASILADTLEAVI 164

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+YLD G++ AG  V + +     KS +     D KT LQE    +    PEY VT   
Sbjct: 165 GAVYLDQGLDKAGELVHRLFDPLIEKSAELGAGLDWKTSLQELTAVEGLGVPEYLVT-EE 223

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           GPDH+  FT    + G++   G   SK+ AEQ AA
Sbjct: 224 GPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 258


>gi|290476134|ref|YP_003469034.1| RNase III, ds RNA [Xenorhabdus bovienii SS-2004]
 gi|289175467|emb|CBJ82270.1| RNase III, ds RNA [Xenorhabdus bovienii SS-2004]
          Length = 226

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 123/225 (54%), Gaps = 6/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+++  + L++++GY F    LL +ALTH S +  + E   RLEFLGD IL  +I+  L+
Sbjct: 1   MNSIIINRLQRKLGYTFIQHDLLLQALTHRSANSKHNE---RLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD +E
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGHRRESILADSIE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI A++LD  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGAIFLDSDIQTIERIILSWYETRLNEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222
              G  HD  FT+  +ISG   P +G+  S+R AEQ AA + LK+
Sbjct: 178 QVRGEAHDQEFTIHCQISGFEQPVRGVGSSRRKAEQAAAEQALKQ 222


>gi|271501621|ref|YP_003334647.1| ribonuclease III [Dickeya dadantii Ech586]
 gi|270345176|gb|ACZ77941.1| ribonuclease III [Dickeya dadantii Ech586]
          Length = 226

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 120/225 (53%), Gaps = 6/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L+K++GY F    LL +ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 1   MNPILINRLQKKLGYTFQQYDLLLQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSNIQTIERLILSWYQTRLDEISPGDKQKDPKTRLQEFLQGRHLPLPTYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222
              G  HD  FT+  ++SG + P  G   S+R AEQ AA + LK+
Sbjct: 178 QVRGEAHDQEFTIHCQVSGFSEPVVGTGSSRRKAEQAAAEQALKK 222


>gi|282600119|ref|ZP_05973085.2| ribonuclease III [Providencia rustigianii DSM 4541]
 gi|282566488|gb|EFB72023.1| ribonuclease III [Providencia rustigianii DSM 4541]
          Length = 263

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 119/224 (53%), Gaps = 6/224 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ L    L++++GY F    LL +ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 38  MNPLLLEKLQRKLGYTFTQHDLLIQALTHRSASSKHNE---RLEFLGDSILSFVIANDLY 94

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 95  HRFPKVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 154

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  ++K R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 155 ALIGGIFLDSDIQTIERIILAWYKGRLDEISPGDKQKDPKTRLQEYLQGRHLPLPNYLVV 214

Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLK 221
              G  HD  FT+  E+SG+  +  G+  S+R AEQ AA + LK
Sbjct: 215 QVKGEAHDQEFTIHCEVSGIEQSINGVGSSRRKAEQAAAEQALK 258


>gi|187778952|ref|ZP_02995425.1| hypothetical protein CLOSPO_02547 [Clostridium sporogenes ATCC
           15579]
 gi|187772577|gb|EDU36379.1| hypothetical protein CLOSPO_02547 [Clostridium sporogenes ATCC
           15579]
          Length = 237

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 122/221 (55%), Gaps = 6/221 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           L+ ++   F +  LL+ ALTHSS ++  +  + YERLEFLGD +L L+IS  L+  ++  
Sbjct: 14  LQYKLKVCFKDEKLLDVALTHSSYANGKKNIKYYERLEFLGDSVLQLIISEHLYQKYEDK 73

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           KEGEL+ +   +V   +  ++A+  DL  ++++S            SI AD VES+IAA+
Sbjct: 74  KEGELTRKRAIIVCENSLYEMAKRWDLGFYLQMSKGEELTGGRERVSILADCVESIIAAI 133

Query: 127 YLDGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           YLD G++ A  FV K +K   ++A++  +   D KT LQE       +T  Y++  + GP
Sbjct: 134 YLDKGLDEAREFVMKNFKEIIEKAMRD-EIILDYKTTLQEIVQQNNDLTINYELLKQEGP 192

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            H  +F   V I       G+  SK+ AEQ AA E LK  G
Sbjct: 193 PHRRKFFTNVTIDNEVRGTGIGYSKKEAEQNAAKEALKNLG 233


>gi|29654794|ref|NP_820486.1| ribonuclease III [Coxiella burnetii RSA 493]
 gi|161830652|ref|YP_001597345.1| ribonuclease III [Coxiella burnetii RSA 331]
 gi|30581027|sp|P51837|RNC_COXBU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043306|sp|A9N942|RNC_COXBR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|29542062|gb|AAO91000.1| ribonuclease III [Coxiella burnetii RSA 493]
 gi|161762519|gb|ABX78161.1| ribonuclease III [Coxiella burnetii RSA 331]
          Length = 233

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 125/218 (57%), Gaps = 7/218 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L +R+G+ F N  LL+ ALTH S   S  ++ ERLEFLGD +LG +I++ L+     A
Sbjct: 5   NKLMERLGHQFNNLELLKIALTHCS---SGADNNERLEFLGDSVLGFIIASELYQRRPQA 61

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +EG+LS    S+V+ +  +Q++ +L +  ++++    +K       SI AD +E+++ A+
Sbjct: 62  REGDLSRMRASMVNGDELAQMSTKLGINEYLQLGVGEQKSGGKRRRSILADALEAIVGAI 121

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           Y+D G+E     V  ++ +R     K   ++DAK+ LQEW  A+    P Y+V   +G  
Sbjct: 122 YIDAGLETCRRCVLNWYGERVDDLSKLSPKKDAKSLLQEWLQARRLPLPTYEVKI-TGEA 180

Query: 185 HDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221
           H   FTV   + GL    +G++ ++R AEQ+AA   L+
Sbjct: 181 HAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAKRFLE 218


>gi|294340985|emb|CAZ89380.1| Ribonuclease III (RNase III) [Thiomonas sp. 3As]
          Length = 276

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 119/222 (53%), Gaps = 8/222 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + LE R+GY F +R L E+ALTH S    + E   RLEFLGD +L L  +  L++     
Sbjct: 3   TALETRLGYVFRDRKLFERALTHRSFGADHNE---RLEFLGDSVLNLSAAAWLYHQAARQ 59

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+LS    +LV AE  ++VAR +DL  F+R+     +   +   SI AD VE+L+ A+
Sbjct: 60  DEGQLSRLRAALVRAEALAEVARAIDLGRFLRLGEGELQSGGAQRESILADTVEALLGAI 119

Query: 127 YLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YL+ G + A   + + +      L +   R+DAKT+LQE+   +    P Y V    G  
Sbjct: 120 YLEAGFDTAQEVMRRLFAPLMDTLDADVVRKDAKTQLQEFLQGQRLPLPSYAVLDVRGAA 179

Query: 185 HDPRFTV--VVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           H  +F V   VE  GL   +G   S+R AEQ AA  +++R G
Sbjct: 180 HQQQFKVECAVEALGLK-VEGEGDSRRRAEQDAATRMIERIG 220


>gi|297191816|ref|ZP_06909214.1| ribonuclease III [Streptomyces pristinaespiralis ATCC 25486]
 gi|197722006|gb|EDY65914.1| ribonuclease III [Streptomyces pristinaespiralis ATCC 25486]
          Length = 296

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/219 (36%), Positives = 119/219 (54%), Gaps = 6/219 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           +A  ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L
Sbjct: 9   NASSHTLLEGRLGYQLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 67

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +       EG+L+    ++V++   ++V R L+L SFIR+             SI AD +
Sbjct: 68  YRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTL 127

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD G++ A   V + +     KS       D KT LQE   A+    PEY V
Sbjct: 128 EAVIGAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTAAEGLGVPEYLV 187

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           T  +GPDH+  FT    + G++   G   SK+ AEQ AA
Sbjct: 188 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 225


>gi|260551498|ref|ZP_05825682.1| dsRNA-specific ribonuclease [Acinetobacter sp. RUH2624]
 gi|260405492|gb|EEW98985.1| dsRNA-specific ribonuclease [Acinetobacter sp. RUH2624]
          Length = 230

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/213 (36%), Positives = 114/213 (53%), Gaps = 5/213 (2%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71
           RIGY F    LL+ ALTH S+SH Y  +YERLEFLGD +LG++I+  L++ +    EG L
Sbjct: 16  RIGYQFKQPELLQLALTHRSVSHKY--NYERLEFLGDSLLGMIIANYLYHAYPHENEGRL 73

Query: 72  SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131
           +    +LV  E   ++A +L L+  + +S+   K       SI AD VE++I A+YLD  
Sbjct: 74  TRMRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRESILADTVEAIIGAIYLDSS 133

Query: 132 -IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
            + +    V K++      ++     +D K+ LQE+  A+    P Y+V    G      
Sbjct: 134 DLNLLKDIVLKWYVPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQH 193

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           F V   + GL    G   S+R AEQ AAAE+LK
Sbjct: 194 FKVECLVDGLPKIYGEGSSRRFAEQAAAAEILK 226


>gi|259501533|ref|ZP_05744435.1| ribonuclease III [Lactobacillus iners DSM 13335]
 gi|302191494|ref|ZP_07267748.1| ribonuclease III [Lactobacillus iners AB-1]
 gi|309804216|ref|ZP_07698293.1| ribonuclease III [Lactobacillus iners LactinV 11V1-d]
 gi|309806878|ref|ZP_07700865.1| ribonuclease III [Lactobacillus iners LactinV 03V1-b]
 gi|309808658|ref|ZP_07702550.1| ribonuclease III [Lactobacillus iners LactinV 01V1-a]
 gi|325913482|ref|ZP_08175848.1| ribonuclease III [Lactobacillus iners UPII 60-B]
 gi|259167051|gb|EEW51546.1| ribonuclease III [Lactobacillus iners DSM 13335]
 gi|308163619|gb|EFO65889.1| ribonuclease III [Lactobacillus iners LactinV 11V1-d]
 gi|308166744|gb|EFO68936.1| ribonuclease III [Lactobacillus iners LactinV 03V1-b]
 gi|308168132|gb|EFO70258.1| ribonuclease III [Lactobacillus iners LactinV 01V1-a]
 gi|325477251|gb|EGC80397.1| ribonuclease III [Lactobacillus iners UPII 60-B]
          Length = 225

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/220 (36%), Positives = 119/220 (54%), Gaps = 7/220 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
           + L+++    F N  LLE+ALTHSS S+ +Q  ++YE+LEFLGD +L L IS  L+ HF 
Sbjct: 8   NELQEKYQIKFNNEQLLEQALTHSSYSNEHQGCKNYEKLEFLGDAVLELAISDYLYRHFP 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EGEL+   +++V  E  SQ A E   +  +++     K       ++  DV E+   
Sbjct: 68  NMNEGELTRMRSNIVRTEGFSQFATECGFSREVKLGKGEEKSGSRTRHTLLEDVFEAFNG 127

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           AL+LD G+     F+        +  G F   RD KTELQE       +  +YKV     
Sbjct: 128 ALFLDQGMPAVQHFL-HLTVYPLIAEGDFDSSRDYKTELQEKLQVNGAIDIQYKVI--DS 184

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            +  PRFTV + ++G   +QG+  SK+AAEQVAA+  LK 
Sbjct: 185 DEAQPRFTVQLIVAGENISQGIGRSKKAAEQVAASVALKN 224


>gi|254383289|ref|ZP_04998642.1| ribonuclease 3 [Streptomyces sp. Mg1]
 gi|194342187|gb|EDX23153.1| ribonuclease 3 [Streptomyces sp. Mg1]
          Length = 277

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/219 (36%), Positives = 119/219 (54%), Gaps = 6/219 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           +A  ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L
Sbjct: 16  AASSHTLLEGRLGYRLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 74

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +       EG+L+    ++V++   ++V R L+L SFIR+             SI AD +
Sbjct: 75  YTTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTL 134

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD G++ A   V + +     KS       D KT LQE   A+    PEY V
Sbjct: 135 EAVIGAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTAAEGLGVPEYLV 194

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           T  +GPDH+  FT    + G++   G   SK+ AEQ AA
Sbjct: 195 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 232


>gi|290957120|ref|YP_003488302.1| ribonuclease III [Streptomyces scabiei 87.22]
 gi|260646646|emb|CBG69743.1| putative ribonuclease III [Streptomyces scabiei 87.22]
          Length = 272

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/219 (36%), Positives = 118/219 (53%), Gaps = 6/219 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           +A  ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L
Sbjct: 17  TASSHTLLEGRLGYKLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 75

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +       EG+L+    ++V++   ++V R LDL SFIR+             SI AD +
Sbjct: 76  YRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLDLGSFIRLGRGEEGTGGRDKASILADTL 135

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD G++ A   V + +     KS       D KT LQE    +    PEY V
Sbjct: 136 EAVIGAVYLDQGLDSAAELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLV 195

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           T  +GPDH+  FT    + G++   G   SK+ AEQ AA
Sbjct: 196 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 233


>gi|220917396|ref|YP_002492700.1| Ribonuclease III [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955250|gb|ACL65634.1| Ribonuclease III [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 383

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/214 (35%), Positives = 114/214 (53%), Gaps = 8/214 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNH 62
             LE R+G A  +R     ALTH S  + ++E      ERLEFLGD ++ L +S  L   
Sbjct: 26  GALEARLGIAVTDRQAALAALTHKSYVNEHREDGLQDNERLEFLGDAVIDLAVSHRLMER 85

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F SA+EG+LS    ++V  +  + +AR LDL + +R+            +S+ AD +E++
Sbjct: 86  FPSAREGDLSKMRAAVVDEQGLAGMARALDLGTLLRLGRGEELTGGRQKSSLLADAMEAV 145

Query: 123 IAALYLDGGIEVAGTFVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           IAA+Y   G+     FVD++  +   RA  +G   RD KT+LQE + ++   TP Y+V  
Sbjct: 146 IAAVYQGQGLPAVLCFVDRFLGEAFARAA-AGTLDRDFKTQLQELSQSRLRATPRYRVVA 204

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
             GPDH   F V  ++ G    +G   SK+ AEQ
Sbjct: 205 EHGPDHSKTFEVETDLRGEVLGRGAGRSKKDAEQ 238


>gi|163814044|ref|ZP_02205436.1| hypothetical protein COPEUT_00197 [Coprococcus eutactus ATCC 27759]
 gi|158450493|gb|EDP27488.1| hypothetical protein COPEUT_00197 [Coprococcus eutactus ATCC 27759]
          Length = 232

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/219 (36%), Positives = 117/219 (53%), Gaps = 6/219 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           Y  LEK+IGY F + +LL  ALTH+S ++  +    +SYERLEFLGD IL  ++S  LF 
Sbjct: 8   YDELEKKIGYQFKDINLLITALTHTSFANELKVNKTDSYERLEFLGDAILEYIVSEYLFL 67

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
                +EG L+    SLV   T SQ++  L    ++R+S            SI  D+ ES
Sbjct: 68  KKKEYEEGRLTKLRASLVCEFTLSQISESLGYGDYVRLSKGEELTGGRKRKSILCDLFES 127

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           ++ A+YLDGGIE A  FV ++          F  DAK+ LQE+   K G    Y++    
Sbjct: 128 VLGAMYLDGGIEPAKEFVHRFLLDDVETKSLF-YDAKSTLQEFCQ-KHGRQLSYELIEER 185

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           GP+H   F     I+G   A+G   +++ +EQ+AA + L
Sbjct: 186 GPEHSKIFVSDAVINGKVTARGEGPNRKTSEQMAAYKTL 224


>gi|118580198|ref|YP_901448.1| ribonuclease III [Pelobacter propionicus DSM 2379]
 gi|118502908|gb|ABK99390.1| RNAse III [Pelobacter propionicus DSM 2379]
          Length = 234

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/207 (35%), Positives = 113/207 (54%), Gaps = 4/207 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64
           + LE+ I Y F +++ L +ALTH S  H      +Y+RLEFLGD +LG++++ +LF  F 
Sbjct: 6   AELEREIAYRFIDQAPLLQALTHPSFEHEQAGGGNYQRLEFLGDAVLGMVLAEMLFRRFP 65

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            + EG LS   + +   +T + +AR   L  F+R+     +       SI ADV+E+LIA
Sbjct: 66  DSNEGVLSRLRSQIADQDTLAGIARSFGLGRFVRLGRGEEQGAGRNKDSILADVLEALIA 125

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YLDGG++ +   + + +       G   R  DAK+ELQE   A+   +P Y++T  SG
Sbjct: 126 AVYLDGGLKESRRLIQRLFVAILESRGARLRFNDAKSELQELLSARRLPSPVYRLTGESG 185

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209
           P HD  F   V +      +G   SK+
Sbjct: 186 PPHDRLFIFQVLVDDAVVGEGEGRSKK 212


>gi|165975962|ref|YP_001651555.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|238687533|sp|B0BUA6|RNC_ACTPJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|165876063|gb|ABY69111.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
          Length = 223

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/223 (37%), Positives = 118/223 (52%), Gaps = 8/223 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++   L+K++GY F N   L +ALTH S      ++ ERLEFLGD IL   I   LF  F
Sbjct: 1   MQLERLQKKLGYQFTNLDYLLQALTHRSAGA---KNNERLEFLGDSILNFAIGKALFEKF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EGELS    +LV  +T + +AR+  L  ++++ +   K       SI +D VE++I
Sbjct: 58  PKANEGELSRMRATLVREQTLAILARKFGLGEYMKLGAGELKSGGYRRESILSDCVEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRAL---KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           AA+YLD G++ A   V   W Q  L   K G  ++D KT LQE+   +    P Y+V   
Sbjct: 118 AAIYLDAGMDKAIAQVH-LWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVLNI 176

Query: 181 SGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKR 222
            G  H+  F V  +I  L     G+  S+R AEQ AA +VL +
Sbjct: 177 KGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAK 219


>gi|296136816|ref|YP_003644058.1| ribonuclease III [Thiomonas intermedia K12]
 gi|295796938|gb|ADG31728.1| ribonuclease III [Thiomonas intermedia K12]
          Length = 276

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 119/222 (53%), Gaps = 8/222 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + LE R+GY F +R L E+ALTH S    + E   RLEFLGD +L L  +  L++     
Sbjct: 3   TALETRLGYVFRDRKLFERALTHRSFGADHNE---RLEFLGDSVLNLSAAAWLYHQAARQ 59

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+LS    +LV AE  ++VAR +DL  F+R+     +   +   SI AD VE+L+ A+
Sbjct: 60  DEGQLSRLRAALVRAEALAEVARAIDLGRFLRLGEGELQSGGAQRESILADTVEALLGAI 119

Query: 127 YLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YL+ G + A   + + +      L +   R+DAKT+LQE+   +    P Y V    G  
Sbjct: 120 YLEAGFDTAQEVMRRLFAPLMDTLDADVVRKDAKTQLQEFLQGQRLPLPSYAVLDVRGAA 179

Query: 185 HDPRFTV--VVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           H  +F V   VE  GL   +G   S+R AEQ AA  +++R G
Sbjct: 180 HQQQFKVECAVEALGLK-VEGEGDSRRRAEQDAATRMIERIG 220


>gi|206603814|gb|EDZ40294.1| Ribonuclease III [Leptospirillum sp. Group II '5-way CG']
          Length = 247

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 118/224 (52%), Gaps = 9/224 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISH-----SYQESYERLEFLGDRILGLLISTLLFN 61
           S LE  +GY F    LLE+A TH S  +         + ERLEFLGD +LGL+I+  L  
Sbjct: 8   SELEDLLGYRFRKIDLLEEATTHKSFMNEGRRLGVTRNNERLEFLGDTVLGLVIAEYLMV 67

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +    EG LS     +VS  T + V+R L +  F+ +            +S+ AD +E+
Sbjct: 68  TYPKYPEGVLSKFKGRIVSEPTLASVSRVLGIGGFLLIGKGEELTQGREKSSLLADAMEA 127

Query: 122 LIAALYLDGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +IAA+YLD G++ A TF+  +++   ++ ++    + D KT+LQE+   +    P Y+V 
Sbjct: 128 VIAAIYLDSGLDAARTFIIGHFRSVIEQTVQEDSIQ-DYKTDLQEYCQRELETLPVYQVM 186

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            + GPDH   F V V I G    +G   SK+ AEQ AA + L R
Sbjct: 187 DQRGPDHQKEFDVAVLIRGKIYGEGSGRSKKEAEQKAAKDALSR 230


>gi|300113378|ref|YP_003759953.1| ribonuclease III [Nitrosococcus watsonii C-113]
 gi|299539315|gb|ADJ27632.1| ribonuclease III [Nitrosococcus watsonii C-113]
          Length = 233

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/208 (37%), Positives = 117/208 (56%), Gaps = 8/208 (3%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
           +++GY FA  +LL  A+TH S +   +E+ ERLEFLGD IL  LI+  L++ F  A+EG+
Sbjct: 10  QKLGYQFAEPALLRHAITHRSAA---KENNERLEFLGDSILNFLIADFLYSGFPKAQEGK 66

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           LS    +LV  ET +++AREL++   + +     K      TSI AD  E++I A+YLDG
Sbjct: 67  LSRLRATLVKGETLAELARELEIGDHLILGLGELKSGGYRRTSILADAFEAVIGAVYLDG 126

Query: 131 GIEVAGTFVDKYWKQR--ALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           G+E     V   ++ R   L        +D KT LQE+  A+    P+Y+V+  +G  HD
Sbjct: 127 GLEACRQLVSSLYRDRLETLTDEVLLNLKDPKTRLQEYLQARQFPLPDYRVSAVNGEAHD 186

Query: 187 PRFTVVVEISGLAPAQ-GMDCSKRAAEQ 213
             F V   ++   P+  G+  S+R AEQ
Sbjct: 187 QVFQVECTLNNTFPSVIGIGRSRRKAEQ 214


>gi|157374287|ref|YP_001472887.1| ribonuclease III [Shewanella sediminis HAW-EB3]
 gi|189043354|sp|A8FSD6|RNC_SHESH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|157316661|gb|ABV35759.1| Ribonuclease III [Shewanella sediminis HAW-EB3]
          Length = 225

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/215 (37%), Positives = 116/215 (53%), Gaps = 5/215 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L + +GY F ++SLLE ALTH S S  + E   RLEFLGD IL ++IS  LF+ F  A E
Sbjct: 10  LCRTLGYEFNDQSLLEHALTHRSASSKHNE---RLEFLGDSILSIIISDALFHQFPKATE 66

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    +LV  +  +++  E  L  ++ +     K       SI AD VE++I A+Y+
Sbjct: 67  GDLSRMRATLVCGKMLAEIGFEFKLGDYLNLGPGELKSGGFRRESIIADAVEAIIGAVYI 126

Query: 129 DGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           D G+E     V  +++ R A+     ++D KT LQE         P YKV    G  H  
Sbjct: 127 DSGVEKCRCLVLSWYESRLAIIQPVNQKDPKTLLQELLQGFKKPLPVYKVIDIKGEAHAQ 186

Query: 188 RFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221
            FTV   +  L+ P  G+  S+R AEQ+AAA+ L+
Sbjct: 187 TFTVECYVEELSKPVIGIASSRRKAEQLAAADALE 221


>gi|323484230|ref|ZP_08089599.1| hypothetical protein HMPREF9474_01350 [Clostridium symbiosum
           WAL-14163]
 gi|323692112|ref|ZP_08106358.1| ribonuclease III [Clostridium symbiosum WAL-14673]
 gi|323402472|gb|EGA94801.1| hypothetical protein HMPREF9474_01350 [Clostridium symbiosum
           WAL-14163]
 gi|323503835|gb|EGB19651.1| ribonuclease III [Clostridium symbiosum WAL-14673]
          Length = 228

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/212 (35%), Positives = 113/212 (53%), Gaps = 5/212 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLLFNHFD 64
           LE++ GY F NR LL +A+THSS ++    S  E  ERLEFLGD +L ++ S  LF+ F 
Sbjct: 8   LEEKTGYHFNNRELLGRAMTHSSYANECHKSKLECNERLEFLGDAVLEIVSSDFLFHKFP 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+L+    S+V   T +  A EL L  ++ +             S+ +D +E+LI 
Sbjct: 68  DMPEGDLTKTRASMVCEPTLAYCAEELSLGKYLLLGKGEEATGGRNRNSVVSDAMEALIG 127

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A+YLDGG   A  F+ K+     ++  K   D+KT LQE   ++      Y++    GPD
Sbjct: 128 AIYLDGGFASAKEFIHKFI-LNDMEHKKLFYDSKTILQEIVQSRCEEGLSYQLLREEGPD 186

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           H+  F V  +I      +G   +K+AAEQ+AA
Sbjct: 187 HNKMFEVAAKIGEKEIGRGTGRTKKAAEQLAA 218


>gi|117620609|ref|YP_855343.1| ribonuclease III [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117562016|gb|ABK38964.1| ribonuclease III [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 223

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/209 (36%), Positives = 112/209 (53%), Gaps = 6/209 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++ + L+ R+G+ F ++ LL +ALTH S    + E   RLEFLGD IL L+I+  LF+ F
Sbjct: 3   IKMNRLQSRLGHVFQDQELLTRALTHRSAGSRHNE---RLEFLGDSILSLVIADDLFHRF 59

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EG+LS    +LV  +T +++ RE DL   + +     K       SI AD VE++I
Sbjct: 60  PQAAEGDLSRMRATLVREKTLAELGREFDLGDHLILGPGELKSGGFRRESILADTVEAVI 119

Query: 124 AALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+YLD  +E   T +  ++  R   +K G  ++D KT LQE         P Y VT   
Sbjct: 120 GAVYLDTNLETVRTLLLGWYASRLDEIKPGIEQKDPKTRLQEILQGSRKSLPTYTVTNVK 179

Query: 182 GPDHDPRFTVVVEISGL-APAQGMDCSKR 209
           G  H+  FTV  ++ GL  P  G+  S+R
Sbjct: 180 GEAHNQEFTVQCDVEGLDGPLVGVGTSRR 208


>gi|37527216|ref|NP_930560.1| ribonuclease III [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|81418780|sp|Q7N1X5|RNC_PHOLL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|36786650|emb|CAE15714.1| ribonuclease III (RNase III) [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 226

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 121/225 (53%), Gaps = 6/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F    LL +ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFDQYDLLIQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGYRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI A++LD  I+     +  +++ R   +  G  ++D KT LQE+        P Y V 
Sbjct: 118 ALIGAIFLDSDIQSIERIILSWYETRLNEISPGDKQKDPKTRLQEYLQGHHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222
              G  HD  FT+  ++SG+  P +G   S+R AEQ AA + LK+
Sbjct: 178 MVRGEAHDQEFTIHCQVSGIEQPVKGTGSSRRKAEQAAAEQALKQ 222


>gi|240949696|ref|ZP_04754031.1| ribonuclease III [Actinobacillus minor NM305]
 gi|240295954|gb|EER46630.1| ribonuclease III [Actinobacillus minor NM305]
          Length = 223

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/220 (34%), Positives = 120/220 (54%), Gaps = 6/220 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++   L+K++GY F     L +ALTH S +    ++ ERLEFLGD IL   I   L++ F
Sbjct: 1   MQLERLQKKLGYQFETLDYLTQALTHRSAAS---KNNERLEFLGDSILNFTIGKALYDKF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EGELS    +LV  +T + +AR+ +L  ++++ +   K       SI +D VE++I
Sbjct: 58  PKADEGELSRMRAALVREQTLAVIARQFELGEYLKLGAGELKSGGFRRESILSDCVEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+YLD G+E A   +  +++     +  G+ ++D KT LQE+   +    PEY+V    
Sbjct: 118 AAIYLDKGMEPAMERIYAWYETFLAEITPGEAQKDPKTRLQEFLQGRKLPLPEYEVIDIK 177

Query: 182 GPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVL 220
           G  H+  F V  ++ G+     G   S+R AEQ  A +VL
Sbjct: 178 GEAHNQTFKVTCKVQGIEEIFTGQGTSRRKAEQNVAEKVL 217


>gi|254428849|ref|ZP_05042556.1| ribonuclease III [Alcanivorax sp. DG881]
 gi|196195018|gb|EDX89977.1| ribonuclease III [Alcanivorax sp. DG881]
          Length = 228

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/220 (40%), Positives = 118/220 (53%), Gaps = 9/220 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L  R+GY F + SLLE ALTH S+S     +YERLEFLGD  LG +IS  LF  F  A
Sbjct: 6   NRLMARLGYQFQDISLLELALTHRSVSR--HRNYERLEFLGDAQLGQIISVALFEQFPEA 63

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+L+    SLV  +T + VAREL L  ++ +     K       SI AD +ES+I A+
Sbjct: 64  AEGQLTRMRASLVRGQTLALVARELGLGEYLVLGGGELKSGGFRRDSILADALESIIGAM 123

Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
            LDGG       V  ++  R  A+     ++DAKT LQEW  A+    P Y+VT   G  
Sbjct: 124 LLDGGESRCREVVLCWFAPRLDAISPQSAQKDAKTRLQEWLQARKFELPTYEVTQVEGLA 183

Query: 185 HDPRFTV---VVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
               F V   + ++  +  AQG   S+R AEQ AA+  L+
Sbjct: 184 PKQTFDVQCSLDQVQQIFIAQG--ASRRKAEQEAASLALE 221


>gi|119476421|ref|ZP_01616772.1| ribonuclease III [marine gamma proteobacterium HTCC2143]
 gi|119450285|gb|EAW31520.1| ribonuclease III [marine gamma proteobacterium HTCC2143]
          Length = 229

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/206 (34%), Positives = 110/206 (53%), Gaps = 5/206 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           +  L +++G+ F + SL++ AL+H S+     ++ ERLEFLGD I+  L++  LF  F  
Sbjct: 8   HHLLIQKLGHEFNDPSLVDLALSHRSVG---AKNNERLEFLGDSIVNFLMAEALFQKFPE 64

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
            +EGELS     LV  ET +++A+E  +   + +     K       SI AD VE+LI A
Sbjct: 65  CREGELSQMRAQLVKGETLAEIAKEFSVGEHLNLGPGELKSGGYRRESILADAVEALIGA 124

Query: 126 LYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YLDGG+      V ++++ R   +      +DAKT LQEW  A+    P+Y +   SG 
Sbjct: 125 IYLDGGMAACNEHVPRWFESRLDLISPRNSNKDAKTRLQEWLQARKMPLPQYVLINTSGS 184

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKR 209
           DH  +FT+  +I  L      D S R
Sbjct: 185 DHQQQFTIECDIHHLQQRFTGDGSSR 210


>gi|71281241|ref|YP_270777.1| ribonuclease III [Colwellia psychrerythraea 34H]
 gi|90101619|sp|Q47WP5|RNC_COLP3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|71146981|gb|AAZ27454.1| ribonuclease III [Colwellia psychrerythraea 34H]
          Length = 266

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/217 (35%), Positives = 119/217 (54%), Gaps = 10/217 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L K++GY F    LL +ALTH S   ++ E   RLEFLGD ILG +I+  L++ F    E
Sbjct: 11  LTKKLGYEFNEPLLLVQALTHRSAKGAHNE---RLEFLGDSILGFVIAEALYDKFPKHDE 67

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+L+   +SLV   T ++VAR+ +L   + +     K       SI  D +E++I A+YL
Sbjct: 68  GDLTRMRSSLVKGVTLAEVARDFNLGECLILGPGELKSGGHHRESILEDAIEAIIGAVYL 127

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D  IE     +  ++++R   +K G  ++D KT LQE+   +    P Y+V   +G  H+
Sbjct: 128 DSNIECCKALILSWFERRLMVIKPGNEQKDPKTRLQEFLQGRKIPLPTYEVIDTTGQSHN 187

Query: 187 PRFTVVVE---ISGLAPAQGMDCSKRAAEQVAAAEVL 220
             FTV  +   IS +  A+G   S+R AEQ AA ++L
Sbjct: 188 QEFTVRCQTSVISEVVIAKGT--SRRKAEQEAAQQIL 222


>gi|309809559|ref|ZP_07703417.1| ribonuclease III [Lactobacillus iners SPIN 2503V10-D]
 gi|329921162|ref|ZP_08277684.1| ribonuclease III [Lactobacillus iners SPIN 1401G]
 gi|308170231|gb|EFO72266.1| ribonuclease III [Lactobacillus iners SPIN 2503V10-D]
 gi|328934800|gb|EGG31291.1| ribonuclease III [Lactobacillus iners SPIN 1401G]
          Length = 225

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/220 (36%), Positives = 119/220 (54%), Gaps = 7/220 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
           + L+++    F N  LLE+ALTHSS S+ +Q  ++YE+LEFLGD +L L IS  L+ HF 
Sbjct: 8   NELQEKYQIKFNNEQLLEQALTHSSYSNEHQGCKNYEKLEFLGDAVLELAISDYLYRHFP 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EGEL+   +++V  E  SQ A E   +  +++     K       ++  DV E+   
Sbjct: 68  NMNEGELTRMRSNIVRTEGFSQFATECGFSREVKLGKGEEKSGSRTRHTLLEDVFEAFNG 127

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           AL+LD G+     F+        +  G F   RD KTELQE       +  +YKV     
Sbjct: 128 ALFLDQGMPAVQHFL-HLTVYPLIAEGDFDSSRDYKTELQEKLQVNGAIDIQYKVI--DS 184

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            +  PRFTV + ++G   +QG+  SK+AAEQVAA+  LK 
Sbjct: 185 DEAKPRFTVQLIVAGENISQGIGRSKKAAEQVAASVALKN 224


>gi|34580889|ref|ZP_00142369.1| ribonuclease III [Rickettsia sibirica 246]
 gi|157828029|ref|YP_001494271.1| ribonuclease III [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165932727|ref|YP_001649516.1| ribonuclease III [Rickettsia rickettsii str. Iowa]
 gi|229586355|ref|YP_002844856.1| ribonuclease III [Rickettsia africae ESF-5]
 gi|166991034|sp|A8GQT8|RNC_RICRS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043343|sp|B0BW84|RNC_RICRO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|259646551|sp|C3PMF3|RNC_RICAE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|28262274|gb|EAA25778.1| ribonuclease III [Rickettsia sibirica 246]
 gi|157800510|gb|ABV75763.1| ribonuclease III [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165907814|gb|ABY72110.1| ribonuclease III [Rickettsia rickettsii str. Iowa]
 gi|228021405|gb|ACP53113.1| Ribonuclease III [Rickettsia africae ESF-5]
          Length = 227

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 119/223 (53%), Gaps = 9/223 (4%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQES--YERLEFLGDRILGLLISTLLFN 61
           +  LEK + Y+F N+ LL +AL+H S+   H Y++   YERLEFLGD +L L+I+ +LF 
Sbjct: 4   FEKLEKLLSYSFKNKELLIEALSHPSLRQHHEYKDDKDYERLEFLGDAVLNLVITEILFR 63

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA--DVV 119
           +F +  EG L+   + LV  ET   V  +L L ++I ++    ++V     ++    +  
Sbjct: 64  NFANYNEGNLAKIRSYLVCKETICMVGAKLTLKNYIIMTHG--EEVAGGRDNLNNIENAT 121

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E+LIAA+YLD  IE     ++K W +          D KT LQEWA A     P Y++  
Sbjct: 122 EALIAAIYLDSNIETTHDIIEKLWAEFIKVQNLTDYDPKTALQEWAQASDHHLPIYRLIK 181

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           R G  H   FTV+V++       G   + + AE+ AA  +L R
Sbjct: 182 REGASHSSTFTVLVKVKDYEQT-GTGHAIKEAEKNAARSLLHR 223


>gi|157803302|ref|YP_001491851.1| ribonuclease III [Rickettsia canadensis str. McKiel]
 gi|189043341|sp|A8EXI3|RNC_RICCK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|157784565|gb|ABV73066.1| ribonuclease III [Rickettsia canadensis str. McKiel]
          Length = 227

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 117/221 (52%), Gaps = 5/221 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQES--YERLEFLGDRILGLLISTLLFN 61
           ++ LEK +GY+F N+ LL +AL+H S+   H Y+++  YERLEFLGD +L L+I+ +LF+
Sbjct: 4   FNELEKLLGYSFKNKELLIEALSHPSLRQHHEYKDNKDYERLEFLGDAVLNLVITKILFS 63

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +F S  EG L+   + LV  ET   V  +L L  +I ++            +   +  E+
Sbjct: 64  NFASYNEGNLAKIRSYLVCKETICMVGAKLALKDYIIMTYGEEVAGGRDNPNNIENATEA 123

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           LIAA+YLD  IE     + + W +          D KT LQEWA A     P Y +  R 
Sbjct: 124 LIAAIYLDSNIETTHNIIGQLWAEFIKVQNLTDYDPKTALQEWAQASDHHLPIYCLIKRE 183

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           G  H   FTV+V++       G+  S + AE+ AA  +L R
Sbjct: 184 GAAHSSTFTVLVKVKDYEQI-GIGYSIKEAEKNAARSLLHR 223


>gi|153208682|ref|ZP_01946929.1| ribonuclease III [Coxiella burnetii 'MSU Goat Q177']
 gi|212219222|ref|YP_002306009.1| ribonuclease III [Coxiella burnetii CbuK_Q154]
 gi|226741367|sp|B6J4J9|RNC_COXB1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|120575793|gb|EAX32417.1| ribonuclease III [Coxiella burnetii 'MSU Goat Q177']
 gi|212013484|gb|ACJ20864.1| ribonuclease III [Coxiella burnetii CbuK_Q154]
          Length = 233

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 125/218 (57%), Gaps = 7/218 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L +R+G+ F N  LL+ ALTH S   S  ++ ERLEFLGD +LG +I++ L+     A
Sbjct: 5   NKLMERLGHQFNNLELLKIALTHRS---SGADNNERLEFLGDSVLGFIIASELYQRRPQA 61

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +EG+LS    S+V+ +  +Q++ +L +  ++++    +K       SI AD +E+++ A+
Sbjct: 62  REGDLSRMRASMVNGDELAQMSIKLGINEYLQLGVGEQKSGGKRRRSILADALEAIVGAI 121

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           Y+D G+E     V  ++ +R     K   ++DAK+ LQEW  A+    P Y+V   +G  
Sbjct: 122 YIDAGLETCRRCVLNWYGERVDDLSKLSPKKDAKSLLQEWLQARRLPLPTYEVKI-TGEA 180

Query: 185 HDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221
           H   FTV   + GL    +G++ ++R AEQ+AA   L+
Sbjct: 181 HAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAKRFLE 218


>gi|291546254|emb|CBL19362.1| RNAse III [Ruminococcus sp. SR1/5]
          Length = 226

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/205 (38%), Positives = 110/205 (53%), Gaps = 5/205 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
           LE+ IGY F  +SLLE+A+THSS ++          ERLEFLGD +L L+ S  L+  F 
Sbjct: 8   LEQTIGYQFTAKSLLEQAMTHSSYANEKHLGKLGCNERLEFLGDAVLELISSDFLYKKFR 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           + +EGEL+ +  S+V  ++ +  ARE  L  FI +             SI +D +ESLI 
Sbjct: 68  NNQEGELTKKRASMVCEKSLAYCAREFGLPEFILLGRGEEMMGGRKRDSIVSDGLESLIG 127

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A+YLDGG E A  FV K+     L+  +   D+KT LQE          EY++    GPD
Sbjct: 128 AMYLDGGFEPAQAFVMKFI-LNDLEDKRIFYDSKTVLQEMVQEGGNHPVEYRLLKEEGPD 186

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKR 209
           H   FTV   I+G +   G+  +K+
Sbjct: 187 HSKSFTVEALINGKSMGTGIGHTKK 211


>gi|307252103|ref|ZP_07534002.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306860403|gb|EFM92417.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
          Length = 243

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/226 (36%), Positives = 119/226 (52%), Gaps = 8/226 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ ++   L+K++ Y F N   L +ALTH S      ++ ERLEFLGD IL   I   LF
Sbjct: 18  MNNMQLERLQKKLSYQFTNLDYLLQALTHRSAGA---KNNERLEFLGDSILNFAIGKALF 74

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELS    +LV  +T + +AR+  L  ++++ +   K       SI +D VE
Sbjct: 75  EKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVE 134

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRAL---KSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           ++IAA+YLD G++ A   V   W Q  L   K G  ++D KT LQE+   +    P Y+V
Sbjct: 135 AIIAAIYLDAGMDKAIAQVH-LWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEV 193

Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKR 222
               G  H+  F V  +I  L     G+  S+R AEQ AA +VL +
Sbjct: 194 LDIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAK 239


>gi|257464706|ref|ZP_05629077.1| ribonuclease III [Actinobacillus minor 202]
 gi|257450366|gb|EEV24409.1| ribonuclease III [Actinobacillus minor 202]
          Length = 223

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/220 (34%), Positives = 120/220 (54%), Gaps = 6/220 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++   L+K++GY F     L +ALTH S +    ++ ERLEFLGD IL   I   L++ F
Sbjct: 1   MQLERLQKKLGYQFETLDYLTQALTHRSAAS---KNNERLEFLGDSILNFTIGKALYDKF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EGELS    +LV  +T + +AR+ +L  ++++ +   K       SI +D VE++I
Sbjct: 58  PKADEGELSRMRAALVREQTLAVIARQFELGEYLKLGAGELKSGGFRRESILSDCVEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+YLD G+E A   +  +++     +  G+ ++D KT LQE+   +    PEY+V    
Sbjct: 118 AAIYLDKGMEPAMERIYAWYETFLAEITPGEAQKDPKTRLQEFLQGRKLPLPEYEVIDIK 177

Query: 182 GPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVL 220
           G  H+  F V  ++ G+     G   S+R AEQ  A +VL
Sbjct: 178 GEAHNQTFKVTCKVQGIDEIFTGQGTSRRKAEQNVAEKVL 217


>gi|15595050|ref|NP_212839.1| ribonuclease III [Borrelia burgdorferi B31]
 gi|7531188|sp|O51648|RNC_BORBU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|2688625|gb|AAC67040.1| ribonuclease III (rnc) [Borrelia burgdorferi B31]
          Length = 246

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/212 (36%), Positives = 113/212 (53%), Gaps = 9/212 (4%)

Query: 17  FANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           F+N  LL  AL HSS S+   +   + ERLEFLGD +L L+I+  L+  + +  EGELS 
Sbjct: 30  FSNFDLLNTALCHSSYSNELDQKSSNNERLEFLGDSVLNLIITDHLYKTYPNKSEGELSK 89

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
             + +VS ++ S +ARE++L S+I +      +       I AD +E+ + A+YLD G  
Sbjct: 90  ARSYIVSEDSLSNIAREINLGSYILLGRGEESNDGRNKKGILADAIEAFVGAIYLDSGFS 149

Query: 134 VAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
            A  FV    D Y +      G F +D K+ LQE+   K+ ++P YK+    GPDHD  F
Sbjct: 150 RATEFVVGLFDMYIRL-MFNRGDF-KDYKSLLQEYVQKKYKISPSYKLDKEIGPDHDKVF 207

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V + +     + G   SK+ AE  AA   LK
Sbjct: 208 CVELYVGENFISNGKGKSKKEAEMRAAEVALK 239


>gi|195941524|ref|ZP_03086906.1| ribonuclease III (rnc) [Borrelia burgdorferi 80a]
 gi|216264636|ref|ZP_03436628.1| ribonuclease III [Borrelia burgdorferi 156a]
 gi|218249229|ref|YP_002375205.1| ribonuclease III [Borrelia burgdorferi ZS7]
 gi|221217995|ref|ZP_03589462.1| ribonuclease III [Borrelia burgdorferi 72a]
 gi|223889463|ref|ZP_03624049.1| ribonuclease III [Borrelia burgdorferi 64b]
 gi|224532354|ref|ZP_03672984.1| ribonuclease III [Borrelia burgdorferi WI91-23]
 gi|224533390|ref|ZP_03673984.1| ribonuclease III [Borrelia burgdorferi CA-11.2a]
 gi|225548949|ref|ZP_03769926.1| ribonuclease III [Borrelia burgdorferi 94a]
 gi|225549922|ref|ZP_03770883.1| ribonuclease III [Borrelia burgdorferi 118a]
 gi|226320458|ref|ZP_03796024.1| ribonuclease III [Borrelia burgdorferi 29805]
 gi|226321403|ref|ZP_03796930.1| ribonuclease III [Borrelia burgdorferi Bol26]
 gi|215981109|gb|EEC21916.1| ribonuclease III [Borrelia burgdorferi 156a]
 gi|218164417|gb|ACK74478.1| ribonuclease III [Borrelia burgdorferi ZS7]
 gi|221192301|gb|EEE18521.1| ribonuclease III [Borrelia burgdorferi 72a]
 gi|223885149|gb|EEF56253.1| ribonuclease III [Borrelia burgdorferi 64b]
 gi|224512661|gb|EEF83032.1| ribonuclease III [Borrelia burgdorferi WI91-23]
 gi|224513555|gb|EEF83912.1| ribonuclease III [Borrelia burgdorferi CA-11.2a]
 gi|225369381|gb|EEG98833.1| ribonuclease III [Borrelia burgdorferi 118a]
 gi|225370552|gb|EEG99988.1| ribonuclease III [Borrelia burgdorferi 94a]
 gi|226233199|gb|EEH31951.1| ribonuclease III [Borrelia burgdorferi Bol26]
 gi|226234100|gb|EEH32815.1| ribonuclease III [Borrelia burgdorferi 29805]
 gi|312147960|gb|ADQ30619.1| ribonuclease III [Borrelia burgdorferi JD1]
 gi|312148997|gb|ADQ29068.1| ribonuclease III [Borrelia burgdorferi N40]
          Length = 245

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/212 (36%), Positives = 113/212 (53%), Gaps = 9/212 (4%)

Query: 17  FANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           F+N  LL  AL HSS S+   +   + ERLEFLGD +L L+I+  L+  + +  EGELS 
Sbjct: 29  FSNFDLLNTALCHSSYSNELDQKSSNNERLEFLGDSVLNLIITDHLYKTYPNKSEGELSK 88

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
             + +VS ++ S +ARE++L S+I +      +       I AD +E+ + A+YLD G  
Sbjct: 89  ARSYIVSEDSLSNIAREINLGSYILLGRGEESNDGRNKKGILADAIEAFVGAIYLDSGFS 148

Query: 134 VAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
            A  FV    D Y +      G F +D K+ LQE+   K+ ++P YK+    GPDHD  F
Sbjct: 149 RATEFVVGLFDMYIRL-MFNRGDF-KDYKSLLQEYVQKKYKISPSYKLDKEIGPDHDKVF 206

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V + +     + G   SK+ AE  AA   LK
Sbjct: 207 CVELYVGENFISNGKGKSKKEAEMRAAEVALK 238


>gi|149192067|ref|ZP_01870292.1| ribonuclease III [Vibrio shilonii AK1]
 gi|148834092|gb|EDL51104.1| ribonuclease III [Vibrio shilonii AK1]
          Length = 225

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/204 (36%), Positives = 111/204 (54%), Gaps = 6/204 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LEK++GY F +  LL  ALTH S + ++ E   RLEFLGD IL  +I+  L++ F    E
Sbjct: 8   LEKKLGYHFNDSELLMLALTHRSANGNHNE---RLEFLGDSILSFVIADDLYHRFPKVNE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G++S    +LV   T +++ RE  L  ++++     K       SI AD VE++I A+YL
Sbjct: 65  GDMSRMRATLVRGNTLAELGREFVLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAIYL 124

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D  +E+    V  ++  R  A+K G  ++D KT LQE+   +    P Y VT   G  H+
Sbjct: 125 DSDVEMVRKIVLSWYMTRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEAHN 184

Query: 187 PRFTVVVEISGL-APAQGMDCSKR 209
             FTV  E++G+  P  G   S+R
Sbjct: 185 QEFTVSCEVAGVDEPVIGRGTSRR 208


>gi|46143661|ref|ZP_00134800.2| COG0571: dsRNA-specific ribonuclease [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 226

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/226 (36%), Positives = 119/226 (52%), Gaps = 8/226 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ ++   L+K++ Y F N   L +ALTH S      ++ ERLEFLGD IL   I   LF
Sbjct: 1   MNNMQLERLQKKLSYQFTNLDYLLQALTHRSAGA---KNNERLEFLGDSILNFAIGKALF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELS    +LV  +T + +AR+  L  ++++ +   K       SI +D VE
Sbjct: 58  EKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRAL---KSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           ++IAA+YLD G++ A   V   W Q  L   K G  ++D KT LQE+   +    P Y+V
Sbjct: 118 AIIAAIYLDAGMDKAIEQVH-LWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEV 176

Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKR 222
               G  H+  F V  +I  L     G+  S+R AEQ AA +VL +
Sbjct: 177 LDIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAK 222


>gi|254499135|ref|ZP_05111825.1| ribonuclease III [Legionella drancourtii LLAP12]
 gi|254351674|gb|EET10519.1| ribonuclease III [Legionella drancourtii LLAP12]
          Length = 228

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/217 (36%), Positives = 119/217 (54%), Gaps = 10/217 (4%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
           +RI Y F   + L++ALTH S+     E+YER EFLGD IL  +I+  LF+ F S  EG 
Sbjct: 10  RRIDYHFEKPAFLKQALTHCSVG---SENYERFEFLGDSILSFVIANELFHRFPSQSEGH 66

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           LS   + LV  +   ++ARELDL  F+ +     K       SI +D +E++ AA++ DG
Sbjct: 67  LSRLRSFLVRGDMLVEIARELDLGDFLFLGQGELKSGGFRRASILSDALEAVFAAVFFDG 126

Query: 131 GIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           G++ A   + K ++ R L+        +D+KT LQE+  A+    PEY +    G +H+ 
Sbjct: 127 GVDAAKEVILKLYRSR-LEDPNLNDCLKDSKTRLQEYLQAEKIALPEYALIKVEGDEHEQ 185

Query: 188 RF--TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            F  T  VE   L   QG   ++R AEQ+AA  +L++
Sbjct: 186 LFYITCTVEAEKLV-TQGEGSNRRKAEQLAAKAMLEQ 221


>gi|302554407|ref|ZP_07306749.1| ribonuclease III [Streptomyces viridochromogenes DSM 40736]
 gi|302472025|gb|EFL35118.1| ribonuclease III [Streptomyces viridochromogenes DSM 40736]
          Length = 274

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/215 (36%), Positives = 116/215 (53%), Gaps = 6/215 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
           ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L+   
Sbjct: 20  HTLLEGRLGYKVES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTH 78

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+L+    ++V++   ++V R LDL SFIR+             SI AD +E++I
Sbjct: 79  PDLPEGQLAKLRAAVVNSRALAEVGRGLDLGSFIRLGRGEEGTGGRDKASILADTLEAVI 138

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+YLD G++ A   V + +     KS       D KT LQE    +    PEY VT  +
Sbjct: 139 GAVYLDQGLDSAAELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLVT-ET 197

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           GPDH+  FT    + G++   G   SK+ AEQ AA
Sbjct: 198 GPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 232


>gi|328885312|emb|CCA58551.1| Ribonuclease III [Streptomyces venezuelae ATCC 10712]
          Length = 270

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/215 (36%), Positives = 116/215 (53%), Gaps = 6/215 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
           ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L+   
Sbjct: 17  HTLLEGRLGYQLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTH 75

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+L+    ++V++   + V REL+L SFIR+             SI AD +E++I
Sbjct: 76  PDLPEGQLAKLRAAVVNSRALADVGRELELGSFIRLGRGEEGTGGRDKASILADTLEAVI 135

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+YLD G++ A   V + +     KS       D KT LQE   A+    PEY V+   
Sbjct: 136 GAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTAAEGLGVPEYLVS-EE 194

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           GPDH+  FT    + G++   G   SK+ AEQ AA
Sbjct: 195 GPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 229


>gi|307247515|ref|ZP_07529560.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|307249746|ref|ZP_07531725.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|307254355|ref|ZP_07536193.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307258813|ref|ZP_07540545.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
 gi|306856018|gb|EFM88176.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|306858254|gb|EFM90331.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306862654|gb|EFM94610.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306867164|gb|EFM99020.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
          Length = 243

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/226 (36%), Positives = 119/226 (52%), Gaps = 8/226 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ ++   L+K++ Y F N   L +ALTH S      ++ ERLEFLGD IL   I   LF
Sbjct: 18  MNNMQLERLQKKLSYQFTNLDYLLQALTHRSAGA---KNNERLEFLGDSILNFAIGKALF 74

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELS    +LV  +T + +AR+  L  ++++ +   K       SI +D VE
Sbjct: 75  EKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVE 134

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRAL---KSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           ++IAA+YLD G++ A   V   W Q  L   K G  ++D KT LQE+   +    P Y+V
Sbjct: 135 AIIAAIYLDAGMDKAIEQVH-LWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEV 193

Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKR 222
               G  H+  F V  +I  L     G+  S+R AEQ AA +VL +
Sbjct: 194 LDIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAK 239


>gi|331269661|ref|YP_004396153.1| ribonuclease III [Clostridium botulinum BKT015925]
 gi|329126211|gb|AEB76156.1| Ribonuclease III [Clostridium botulinum BKT015925]
          Length = 236

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/220 (36%), Positives = 118/220 (53%), Gaps = 6/220 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLISTLLFNHFD 64
           + +E ++   F + +LL+ ALTHSS  +  +  Y  ERLEFLGD IL L IS LL+N ++
Sbjct: 10  NEVENKLNVKFNDINLLDTALTHSSFVNENKNIYSNERLEFLGDSILQLCISELLYNKYE 69

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG L+ +   +V   +  +VA+E ++  +I +S           TSI +D VE++IA
Sbjct: 70  QEPEGFLTKKRALIVCGNSLHEVAKEWNIGKYINMSKGEEMTGGRTRTSILSDCVEAIIA 129

Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFG-VTPEYKVTFRS 181
           ++YLD G EVA  F+   + +  +   S +   D KT+LQE    KFG    EY++    
Sbjct: 130 SIYLDQGYEVAKKFIIDNFNEIIQKANSDQIILDYKTKLQETIQ-KFGDYNIEYRLVSFD 188

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           GP H  +F   V I       G   SK+ AEQ AA E LK
Sbjct: 189 GPPHRRKFITEVLIDSEVKGVGEGYSKKEAEQNAAKEALK 228


>gi|282861354|ref|ZP_06270419.1| ribonuclease III [Streptomyces sp. ACTE]
 gi|282564012|gb|EFB69549.1| ribonuclease III [Streptomyces sp. ACTE]
          Length = 274

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/219 (35%), Positives = 119/219 (54%), Gaps = 6/219 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           +A  ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L
Sbjct: 16  TASSHTLLEGRLGYHLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 74

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +       EG+L+    ++V++   ++V R LDL SFIR+             SI AD +
Sbjct: 75  YRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLDLGSFIRLGRGEEGTGGRDKASILADTL 134

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD G++ A   V + +     +S       D KT LQE   ++    PEY V
Sbjct: 135 EAVIGAVYLDQGLDAASELVHRLFDPLIDRSSNLGAGLDWKTSLQELTASESLGVPEYLV 194

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           T  +GPDH+  FT    + G++   G   SK+ AEQ AA
Sbjct: 195 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 232


>gi|307260992|ref|ZP_07542674.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
 gi|306869294|gb|EFN01089.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
          Length = 243

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/226 (36%), Positives = 119/226 (52%), Gaps = 8/226 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ ++   L+K++ Y F N   L +ALTH S      ++ ERLEFLGD IL   I   LF
Sbjct: 18  MNNMQLERLQKKLSYQFTNLDYLLQALTHRSAGA---KNNERLEFLGDSILNFAIGKALF 74

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELS    +LV  +T + +AR+  L  ++++ +   K       SI +D VE
Sbjct: 75  EKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVE 134

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRAL---KSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           ++IAA+YLD G++ A   V   W Q  L   K G  ++D KT LQE+   +    P Y+V
Sbjct: 135 AIIAAIYLDAGMDKAIEQVH-LWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEV 193

Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKR 222
               G  H+  F V  +I  L     G+  S+R AEQ AA +VL +
Sbjct: 194 LDIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAK 239


>gi|190149854|ref|YP_001968379.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|189914985|gb|ACE61237.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
          Length = 226

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/224 (37%), Positives = 118/224 (52%), Gaps = 8/224 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ ++   L+K++ Y F N   L +ALTH S      ++ ERLEFLGD IL   I   LF
Sbjct: 1   MNNMQLERLQKKLSYQFTNLDYLLQALTHRSAGA---KNNERLEFLGDSILNFAIGKALF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELS    +LV  +T + +AR+  L  ++++ +   K       SI +D VE
Sbjct: 58  EKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRAL---KSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           ++IAA+YLD G++ A   V   W Q  L   K G  ++D KT LQE+   +    P Y+V
Sbjct: 118 AIIAAIYLDAGMDKAIEQVH-LWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEV 176

Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVL 220
               G  H+  F V  +I  L     G+  S+R AEQ AA +VL
Sbjct: 177 LDIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVL 220


>gi|94502127|ref|ZP_01308628.1| ribonuclease III [Oceanobacter sp. RED65]
 gi|94425729|gb|EAT10736.1| ribonuclease III [Oceanobacter sp. RED65]
          Length = 226

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/220 (36%), Positives = 115/220 (52%), Gaps = 6/220 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L +RIGY F + S  E ALTH S      ++ ERLEFLGD I+  +++  LF  F  AKE
Sbjct: 8   LSQRIGYTFNDISFFELALTHRSKGG---KNNERLEFLGDSIVNFVVAEALFEKFPQAKE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS     LV   T +++AR+ DL  F+ + S   K       SI AD VE++I A+YL
Sbjct: 65  GKLSRLRAGLVRGTTLAELARDFDLGEFLLLGSGELKSGGFNRESILADAVEAIIGAIYL 124

Query: 129 DGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D G++     +  ++ +R   L+     +DAKT LQE         P+Y+V   +G  HD
Sbjct: 125 DSGLDTVRERILTWYGKRLDDLQLDDVVKDAKTRLQEHLQKNQSRLPKYEVMEITGQAHD 184

Query: 187 PRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKREGI 225
             F V   +  L     G+  S+R AEQ AA + L   G+
Sbjct: 185 QNFKVSCWVETLPEVTIGLGSSRRLAEQSAAQKALNALGV 224


>gi|238650709|ref|YP_002916562.1| ribonuclease III [Rickettsia peacockii str. Rustic]
 gi|259646552|sp|C4K1R3|RNC_RICPU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|238624807|gb|ACR47513.1| ribonuclease III [Rickettsia peacockii str. Rustic]
          Length = 227

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 119/223 (53%), Gaps = 9/223 (4%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQES--YERLEFLGDRILGLLISTLLFN 61
           +  LEK + Y+F N+ LL +AL+H S+   H Y++   YERLEFLGD +L L+I+ +LF 
Sbjct: 4   FEKLEKLLSYSFKNKELLIEALSHPSLRQHHEYKDDKDYERLEFLGDAVLNLVITEILFR 63

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA--DVV 119
           +F +  EG L+   + LV  ET   V  +L L ++I ++    ++V     ++    +  
Sbjct: 64  NFANYNEGNLAKIRSYLVCKETICMVGAKLTLKNYIIMTHG--EEVAGGRDNLNNIENAT 121

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E+LIAA+YLD  IE     ++K W +          D KT LQEWA A     P Y++  
Sbjct: 122 EALIAAIYLDSNIETTHDIIEKLWAEFIKVQNLTDYDPKTALQEWAQASDHHLPIYRLIK 181

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           R G  H   FTV+V++       G   + + AE+ AA  +L R
Sbjct: 182 REGASHASTFTVLVKVKDYEQT-GTGHAIKEAEKNAARSLLHR 223


>gi|311693675|gb|ADP96548.1| ribonuclease 3 [marine bacterium HP15]
          Length = 229

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/220 (35%), Positives = 115/220 (52%), Gaps = 6/220 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L++RIGY F +   L  ALTH S  +   ++ ERLEFLGD I+ ++I+  LF HF+ A+E
Sbjct: 10  LQRRIGYQFKSPERLLLALTHRSYGN---QNNERLEFLGDSIVNMVIAEYLFLHFEKARE 66

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS     +V   T +++ RE  L +++R+ S   K       SI AD VES+I A+YL
Sbjct: 67  GQLSRLRARMVKGVTLAEIGREFQLGTYLRLGSGELKSGGFRRESILADAVESIIGAIYL 126

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D         V ++++ R   L     ++D KT LQE+  ++    P Y V    G  H+
Sbjct: 127 DSDFHTCREQVLRWFEHRLEKLDLQDTQKDPKTRLQEYLQSRQFPLPRYDVISVDGEAHN 186

Query: 187 PRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225
             F V   +  L     G   S+R AEQ AA   LK  G+
Sbjct: 187 QTFHVSCALPSLDRKTTGTGSSRRVAEQQAARNALKELGV 226


>gi|307263177|ref|ZP_07544798.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
 gi|306871539|gb|EFN03262.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
          Length = 243

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/224 (37%), Positives = 118/224 (52%), Gaps = 8/224 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ ++   L+K++ Y F N   L +ALTH S      ++ ERLEFLGD IL   I   LF
Sbjct: 18  MNNMQLERLQKKLSYQFTNLDYLLQALTHRSAGA---KNNERLEFLGDSILNFAIGKALF 74

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELS    +LV  +T + +AR+  L  ++++ +   K       SI +D VE
Sbjct: 75  EKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVE 134

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRAL---KSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           ++IAA+YLD G++ A   V   W Q  L   K G  ++D KT LQE+   +    P Y+V
Sbjct: 135 AIIAAIYLDAGMDKAIEQVH-LWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEV 193

Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVL 220
               G  H+  F V  +I  L     G+  S+R AEQ AA +VL
Sbjct: 194 LDIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVL 237


>gi|303248688|ref|ZP_07334942.1| ribonuclease III [Desulfovibrio fructosovorans JJ]
 gi|302489944|gb|EFL49870.1| ribonuclease III [Desulfovibrio fructosovorans JJ]
          Length = 233

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/223 (35%), Positives = 117/223 (52%), Gaps = 9/223 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTLLFNHF 63
           + LE  +G+ F    LL  ALTHSS ++   E+    ERLEFLGD +L L +S  LF  F
Sbjct: 5   TALENALGHVFVRPELLTTALTHSSYANERGEAAKHNERLEFLGDAVLELSVSEELFARF 64

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EGEL++  + LV+  + + +A  L L   I +             S+ +DV E++I
Sbjct: 65  PEAPEGELTLLRSQLVNESSLAAMALRLSLEDHILLGKGEENQGGRTRPSLLSDVFEAVI 124

Query: 124 AALYLDGGIEVAGTFVD----KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            AL+LDGG  VA +FV+    + W  R++      RD K+ LQE+        P Y +  
Sbjct: 125 GALFLDGGYGVAKSFVNATFAEVWPVRSVAPKT--RDYKSRLQEYTQKVHKARPVYTLLD 182

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             GP+HD RFTV +E+        M+ S + AEQ+AA   L++
Sbjct: 183 SEGPEHDKRFTVRLELPDGHALTAMEKSVKKAEQMAARLALEK 225


>gi|212212136|ref|YP_002303072.1| ribonuclease III [Coxiella burnetii CbuG_Q212]
 gi|226741368|sp|B6IYZ9|RNC_COXB2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|212010546|gb|ACJ17927.1| ribonuclease III [Coxiella burnetii CbuG_Q212]
          Length = 233

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/218 (33%), Positives = 125/218 (57%), Gaps = 7/218 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L +R+G+ F N  LL+ ALTH S   S  ++ ERLEFLGD +LG +I++ L+     A
Sbjct: 5   NKLMERLGHQFNNLELLKIALTHRS---SGADNNERLEFLGDSVLGFIIASELYQRRPQA 61

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +EG+LS    S+V+ +  +Q++ +L +  ++++    +K       SI AD +E+++ ++
Sbjct: 62  REGDLSRMRASMVNGDELAQMSTKLGINEYLQLGVGEQKSGGKRRRSILADALEAIVGSI 121

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           Y+D G+E     V  ++ +R     K   ++DAK+ LQEW  A+    P Y+V   +G  
Sbjct: 122 YIDAGLETCRRCVLNWYGERVDDLSKLSPKKDAKSLLQEWLQARRLPLPTYEVKI-TGEA 180

Query: 185 HDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221
           H   FTV   + GL    +G++ ++R AEQ+AA   L+
Sbjct: 181 HAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAKRFLE 218


>gi|239928705|ref|ZP_04685658.1| ribonuclease III [Streptomyces ghanaensis ATCC 14672]
 gi|291437029|ref|ZP_06576419.1| ribonuclease III [Streptomyces ghanaensis ATCC 14672]
 gi|291339924|gb|EFE66880.1| ribonuclease III [Streptomyces ghanaensis ATCC 14672]
          Length = 286

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/215 (36%), Positives = 116/215 (53%), Gaps = 6/215 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
           ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L+   
Sbjct: 30  HTLLEGRLGYQVES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTH 88

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+L+    ++V++   ++V R LDL SFIR+             SI AD +E++I
Sbjct: 89  PDLPEGQLAKLRAAVVNSRALAEVGRGLDLGSFIRLGRGEEGTGGRDKASILADTLEAVI 148

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+YLD G++ A   V + +     KS       D KT LQE    +    PEY VT  +
Sbjct: 149 GAVYLDQGLDSAAELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLVT-ET 207

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           GPDH+  FT    + G++   G   SK+ AEQ AA
Sbjct: 208 GPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 242


>gi|303256999|ref|ZP_07343013.1| ribonuclease III [Burkholderiales bacterium 1_1_47]
 gi|330999188|ref|ZP_08322907.1| ribonuclease III [Parasutterella excrementihominis YIT 11859]
 gi|302860490|gb|EFL83567.1| ribonuclease III [Burkholderiales bacterium 1_1_47]
 gi|329575388|gb|EGG56932.1| ribonuclease III [Parasutterella excrementihominis YIT 11859]
          Length = 228

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/229 (36%), Positives = 120/229 (52%), Gaps = 14/229 (6%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF--- 60
           L  + LE+RIGY F N+ LL +A+TH S S    E  ERLEFLGD +L  +I   LF   
Sbjct: 2   LPLTVLEERIGYTFKNKELLRRAMTHRSFS---AEHNERLEFLGDSVLNCVIGNALFLKD 58

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            HFD   EG LS   ++LV     +++A  + ++ F++V +  +    +   S  AD VE
Sbjct: 59  KHFD---EGSLSRVRSNLVRQSALAEIAERIGISDFLKVGAGEKHTGGNHRPSTIADAVE 115

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQE-WAHAKFGVTPEYKV 177
           ++  A++ DGG E A T + + ++     L      +DAKT LQE      FG+ P Y +
Sbjct: 116 AIFGAVFTDGGFEEAQTVIIRLYEPMLSQLTPTTLGKDAKTNLQEVLQRMHFGL-PLYDI 174

Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREGI 225
               G  HD  F V V+I  L  +  G+  S+R AEQ AA + L  E I
Sbjct: 175 VEIRGAPHDQEFEVRVDIPDLGISLTGVGKSRRQAEQDAAQKALDSEAI 223


>gi|294631623|ref|ZP_06710183.1| ribonuclease III [Streptomyces sp. e14]
 gi|292834956|gb|EFF93305.1| ribonuclease III [Streptomyces sp. e14]
          Length = 275

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/219 (35%), Positives = 118/219 (53%), Gaps = 6/219 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           +A  ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L
Sbjct: 25  TASSHTLLEGRLGYRLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 83

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +       EG+L+    ++V++   ++V R LDL +FIR+             SI AD +
Sbjct: 84  YRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLDLGAFIRLGRGEEGTGGRDKASILADTL 143

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD G++ A   V + +     KS       D KT LQE    +    PEY V
Sbjct: 144 EAVIGAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLV 203

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           T  +GPDH+  FT    + G++   G   SK+ AEQ AA
Sbjct: 204 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 241


>gi|153871985|ref|ZP_02001008.1| Ribonuclease III [Beggiatoa sp. PS]
 gi|152071548|gb|EDN68991.1| Ribonuclease III [Beggiatoa sp. PS]
          Length = 225

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/217 (35%), Positives = 116/217 (53%), Gaps = 5/217 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y+ L + +GY F     L  ALTH S+   + E   RLEFLGD +L  + + +L+  F S
Sbjct: 5   YNHLCQALGYHFKQPEHLTTALTHRSVGTPHNE---RLEFLGDALLNCITAKMLYERFPS 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A+EG+L+    +LV  +T  ++A+ L+L  ++R+     K   +  TS  AD VE++I A
Sbjct: 62  AREGQLTRLRANLVKRDTLVKIAQRLELGKYLRLGDGEIKSGGAKRTSTLADAVEAIIGA 121

Query: 126 LYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           +YLD  ++     +   W++   K S +  +D KT LQE+   +    P Y+V   SG  
Sbjct: 122 IYLDSDMKTCQAVILPIWQESLSKLSLEKIKDPKTRLQEYLQERQQTLPIYRVLSTSGTP 181

Query: 185 HDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVL 220
           H+  F V   I  L  P  G   S+R AEQ AAA+VL
Sbjct: 182 HEQHFEVECRIPYLKEPTYGSGHSRRRAEQSAAAKVL 218


>gi|254514114|ref|ZP_05126175.1| ribonuclease III [gamma proteobacterium NOR5-3]
 gi|219676357|gb|EED32722.1| ribonuclease III [gamma proteobacterium NOR5-3]
          Length = 224

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 87/219 (39%), Positives = 122/219 (55%), Gaps = 6/219 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE++ G    N SLL +AL+H S+      + ERLEFLGD +LG ++S  L+  F  A E
Sbjct: 7   LERQFGCRLQNGSLLTQALSHRSVGS---RNNERLEFLGDSVLGFVVSEELYRRFPDADE 63

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    SLV     + VARELDL   +R+ +           SI AD +E+L+ A+ L
Sbjct: 64  GQLSRLRVSLVKGSALAAVARELDLGDQLRLGAGEIHGGGRRRDSILADTLEALLGAIVL 123

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D GIE     + + ++ R  ALK  + R+D KT LQE+   +    P+Y +   +G DH 
Sbjct: 124 DLGIEACRAAISRVFQSRFDALKLEQARKDPKTRLQEFLQGRGRQLPDYVLCDAAGEDHA 183

Query: 187 PRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             FTV  E+S G   AQG+  S+RAAEQ AA  +L + G
Sbjct: 184 KIFTVACELSDGDEVAQGVGESRRAAEQAAATAILAQLG 222


>gi|304310579|ref|YP_003810177.1| Ribonuclease III [gamma proteobacterium HdN1]
 gi|301796312|emb|CBL44520.1| Ribonuclease III [gamma proteobacterium HdN1]
          Length = 231

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/215 (39%), Positives = 112/215 (52%), Gaps = 7/215 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S L  RIGY F + +LL  ALTH S+S   Q + ERLEFLGD +L L+I   LF  F   
Sbjct: 5   SLLCSRIGYTFNDFNLLNLALTHRSVSG--QTNNERLEFLGDSVLNLIIGGELFTKFPQG 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           KEG+LS    SLV  ET +Q+  E  L  F+ +     K   +   S  AD VE++I A+
Sbjct: 63  KEGQLSRLRASLVRGETLAQIGGEFGLGEFLILGPGEHKSGGARRESTLADAVEAIIGAI 122

Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQE-WAHAKFGVTPEYKVTFRSGP 183
           + + G   A   V +++  R  AL      +D KT LQE   H K G+ PEY++   SG 
Sbjct: 123 FCESGYNEARKVVLRWFDSRIQALTLNDTVKDNKTRLQEILQHLKMGL-PEYRILSVSGS 181

Query: 184 DHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAA 217
            H   F +   I+G+     G   S+R AEQ AA 
Sbjct: 182 SHQQVFQIECAITGVEERFAGSGLSRRQAEQQAAG 216


>gi|261368258|ref|ZP_05981141.1| ribonuclease III [Subdoligranulum variabile DSM 15176]
 gi|282569773|gb|EFB75308.1| ribonuclease III [Subdoligranulum variabile DSM 15176]
          Length = 225

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/226 (37%), Positives = 121/226 (53%), Gaps = 10/226 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLIST 57
           M+  +   L++ + Y F N +LL  ALTH+S ++  +      ERLEFLGD +L ++ + 
Sbjct: 1   MATHKPEELQEVLHYQFKNPALLRIALTHTSYANESKVPTTHNERLEFLGDSVLSVVAAD 60

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF+  D   EGEL+    SLVS +   Q A+E+ L  ++R+             S+ +D
Sbjct: 61  YLFHQSDRP-EGELTRMRASLVSEDALFQFAQEIRLGDYLRLGHGEDLGGGRNRPSVVSD 119

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYK 176
             E++IAALYLDGG+EVA +F+  +     L  GK    D KT LQE           Y+
Sbjct: 120 AFEAVIAALYLDGGLEVARSFILPF-----LSEGKTAEEDYKTRLQEVVQQNPSARLRYE 174

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           V   +GPDH  +FTV V       A+G+  SK+AAEQ AA + L R
Sbjct: 175 VEGETGPDHAKQFTVAVYCDDKRLAEGVGRSKKAAEQHAAKQALDR 220


>gi|164688568|ref|ZP_02212596.1| hypothetical protein CLOBAR_02213 [Clostridium bartlettii DSM
           16795]
 gi|164602981|gb|EDQ96446.1| hypothetical protein CLOBAR_02213 [Clostridium bartlettii DSM
           16795]
          Length = 233

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/220 (36%), Positives = 119/220 (54%), Gaps = 6/220 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESY---ERLEFLGDRILGLLISTLLFNHFDS 65
            E++I Y F N+  + +ALTHSS S+   ++Y   ERLEFLGD +L ++IS  LF     
Sbjct: 14  FEQKINYEFKNKEYILEALTHSSYSNE-NKNYPFNERLEFLGDSVLSIVISDYLFKKETK 72

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGEL+    ++V  E+ S+V++ + L  ++ +             SI AD +E++IAA
Sbjct: 73  LPEGELTKIRANIVCEESLSEVSKNIHLGKYMLLGKGEEATGGRERISILADALEAVIAA 132

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YLDGGI+ A  F+    ++    S  GK  RD KT LQE   +       YK+    GP
Sbjct: 133 IYLDGGIKCAREFILTNMEKIINDSIKGKIFRDYKTCLQEVLQSNGENNIWYKLIEEKGP 192

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           DH+ RF + V I+      G   SK+ AEQVAA   L ++
Sbjct: 193 DHNKRFVMEVGINDTVLGVGEGKSKKDAEQVAAKCALDKK 232


>gi|167040357|ref|YP_001663342.1| ribonuclease III [Thermoanaerobacter sp. X514]
 gi|256750709|ref|ZP_05491594.1| ribonuclease III [Thermoanaerobacter ethanolicus CCSD1]
 gi|300914441|ref|ZP_07131757.1| ribonuclease III [Thermoanaerobacter sp. X561]
 gi|307724323|ref|YP_003904074.1| ribonuclease III [Thermoanaerobacter sp. X513]
 gi|166854597|gb|ABY93006.1| Ribonuclease III [Thermoanaerobacter sp. X514]
 gi|256750292|gb|EEU63311.1| ribonuclease III [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889376|gb|EFK84522.1| ribonuclease III [Thermoanaerobacter sp. X561]
 gi|307581384|gb|ADN54783.1| ribonuclease III [Thermoanaerobacter sp. X513]
          Length = 246

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/224 (37%), Positives = 125/224 (55%), Gaps = 5/224 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTLLFNHF 63
           S LE+RI Y+F +++LL +ALTHSS +H  + S    ERLEFLGD +L L+IS  L+ + 
Sbjct: 21  SELEERINYSFKDKNLLIEALTHSSWAHEGKNSKISNERLEFLGDSVLSLVISEYLYKNR 80

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
              +EG LS     +V   + ++ ARE++L +F+R+             SI AD +E+++
Sbjct: 81  KDLEEGSLSKYRAEIVCEPSLARCAREIELGNFLRIGKGEELTGGRERDSILADAMEAIL 140

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+YLDGG+EV    + + +K     +  G   RD KT+LQE   +       Y++    
Sbjct: 141 AAVYLDGGLEVVRNVILELFKNIIEEVLEGLIYRDYKTKLQEVVQSMEIGKIIYELIEEM 200

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           GPDH+  F   V I  +   +G   SK+ AEQ AA E L + GI
Sbjct: 201 GPDHNKTFVTQVRIGDVILGKGYGKSKKEAEQAAAMEALIKLGI 244


>gi|134299915|ref|YP_001113411.1| ribonuclease III [Desulfotomaculum reducens MI-1]
 gi|189043307|sp|A4J683|RNC_DESRM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|134052615|gb|ABO50586.1| RNAse III [Desulfotomaculum reducens MI-1]
          Length = 246

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 83/224 (37%), Positives = 116/224 (51%), Gaps = 7/224 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFD 64
           L+ R+G+ + N +LL +ALTHSS  H  +       +RLEFLGD +L L+IS  L+  F 
Sbjct: 11  LKTRLGFKWHNPTLLIQALTHSSCVHENRGHGLCHNQRLEFLGDAVLELIISEHLYKMFP 70

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGEL+    S V   + ++VAR LDL   +R+     +       SI AD  E+L+ 
Sbjct: 71  DRTEGELTKMRASSVCEPSLAKVARGLDLGRCLRMGRGEERSGGRERPSILADAFEALLG 130

Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YLD G+E++  FV          + +G+  RD KTELQE           Y +   SG
Sbjct: 131 AIYLDQGLEISRHFVLNCLSSIIDDVVAGRLDRDYKTELQEILQQSSPDPLTYTIMDESG 190

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR-EGI 225
           PDHD  FT  V   G    +G   SK+ AEQ AA +  +  EG+
Sbjct: 191 PDHDKTFTAGVIYKGKVIGKGSGHSKKEAEQQAAKDAFQHLEGM 234


>gi|307545610|ref|YP_003898089.1| ribonuclease III [Halomonas elongata DSM 2581]
 gi|307217634|emb|CBV42904.1| ribonuclease III [Halomonas elongata DSM 2581]
          Length = 229

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/213 (37%), Positives = 114/213 (53%), Gaps = 6/213 (2%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
           +RIG+ FA   LLE A+TH S       + ERLEFLGD I+  +I+  LF  F  A+EG+
Sbjct: 10  RRIGHRFAQPELLELAMTHRSYGG---RNNERLEFLGDSIVNFVIAEDLFQRFPQAREGQ 66

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           LS     LV  +T +++ARE+     +R+ S   K       SI AD VE++I A+YLD 
Sbjct: 67  LSRLRARLVKGQTLAELAREMSFGECLRLGSGEMKSGGHRRDSILADAVEAVIGAIYLDA 126

Query: 131 GIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           G++ A T V  ++ +R   +     ++D KT LQE+  ++    P Y+V    G  H   
Sbjct: 127 GMDTARTRVLSWFAERLETINLQDTQKDPKTRLQEFLQSRQVALPRYEVISVEGEAHAQT 186

Query: 189 FTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVL 220
           FTV   +  L     G+  S+R AEQ AA + L
Sbjct: 187 FTVECHVEMLDEHTLGIGSSRRHAEQQAAEQAL 219


>gi|225551799|ref|ZP_03772742.1| ribonuclease III [Borrelia sp. SV1]
 gi|225371594|gb|EEH01021.1| ribonuclease III [Borrelia sp. SV1]
          Length = 245

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/212 (36%), Positives = 114/212 (53%), Gaps = 9/212 (4%)

Query: 17  FANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           F+N  LL+ AL HSS S+   +   + ERLEFLGD +L L+I+  L+  + +  EGELS 
Sbjct: 29  FSNFDLLDTALCHSSYSNELDQKSSNNERLEFLGDSVLNLIITDHLYKTYPNKSEGELSK 88

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
             + +VS ++ S +ARE++L S+I +      +       I AD +E+ + A+YLD G  
Sbjct: 89  ARSYIVSEDSLSNIAREINLGSYILLGRGEESNDGRNKKGILADAIEAFVGAIYLDSGFL 148

Query: 134 VAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
            A  FV    D Y +      G F +D K+ LQE+   K+ ++P YK+    GPDHD  F
Sbjct: 149 RATEFVVGLFDMYIRL-MFNRGDF-KDYKSLLQEYVQKKYKISPSYKLDKEIGPDHDKVF 206

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V + +     + G   SK+ AE  AA   LK
Sbjct: 207 CVELYVGENFISNGKGKSKKEAEMRAAEVALK 238


>gi|325478725|gb|EGC81836.1| ribonuclease III [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 236

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 69/214 (32%), Positives = 119/214 (55%), Gaps = 6/214 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65
            E +IGY+F ++ L++ A THSS ++  +   +S ERLEFLGD IL +++S +LF H+++
Sbjct: 14  FENKIGYSFNDKELIDVAFTHSSYTNEARGESKSNERLEFLGDSILDMIVSEILFKHYNN 73

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG L+   + LV   + ++   + D++S++      ++        ++AD  E++ AA
Sbjct: 74  KPEGWLTKTRSRLVCTSSFAKACEKFDMSSYLNFGKGEKEHGGHLKKHVKADTFEAVCAA 133

Query: 126 LYLDGGIEVAGTFVDKYWKQRAL---KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +YLD   E     + K +K+ AL          D KT+LQE+ +AK     +Y++    G
Sbjct: 134 IYLDSSYEKLFDILVKNYKEEALVIINDDSIFNDYKTKLQEYHNAKDKKILKYELVKEEG 193

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           P+H   FT+ V++     A G+  +K+ AEQ AA
Sbjct: 194 PEHAKTFTMAVKLGNRILATGVGKNKKQAEQDAA 227


>gi|167623017|ref|YP_001673311.1| ribonuclease III [Shewanella halifaxensis HAW-EB4]
 gi|189043349|sp|B0TIV7|RNC_SHEHH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|167353039|gb|ABZ75652.1| Ribonuclease III [Shewanella halifaxensis HAW-EB4]
          Length = 225

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/215 (37%), Positives = 120/215 (55%), Gaps = 5/215 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L + +GY F  ++ L++ALTH S S+ + E   RLEFLGD IL ++IS  L++ F +A E
Sbjct: 10  LCRTLGYEFTEQAFLDQALTHRSASNKHNE---RLEFLGDSILSIVISDALYHQFPTATE 66

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    +LV  +  +++A E  L  ++++     K       SI AD VE++I A+YL
Sbjct: 67  GDLSRMRATLVCGKMLAEIAIEFKLGDYLKLGPGELKSGGFRRESILADAVEAIIGAIYL 126

Query: 129 DGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           D  IE   + V K+++ R  +     ++D KT LQE         P YKV    G  H+ 
Sbjct: 127 DSEIEKCRSLVLKWYESRLKVIEPINQKDPKTLLQEHLQKFRKPLPVYKVVHTEGDAHEQ 186

Query: 188 RFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLK 221
            FTV   +  L+ A  G+  S+R AEQ AAA+VL+
Sbjct: 187 TFTVECIVEDLSQAVVGVASSRRKAEQSAAAQVLE 221


>gi|323451297|gb|EGB07175.1| hypothetical protein AURANDRAFT_6264 [Aureococcus anophagefferens]
          Length = 227

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/220 (37%), Positives = 118/220 (53%), Gaps = 8/220 (3%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           +L KR+ + F +   LE ALTH S  +H+    +ERLEFLGDR+LGL+++  L +H+   
Sbjct: 3   SLSKRLDHDFDDLDHLEAALTHPSTGAHASTGRFERLEFLGDRVLGLVVAEWLHDHYPDE 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-LRKDVCSFMTSIQADVVESLIAA 125
            EGE  +R + LV  E    VA  L L   +R  S  L     +   ++ AD +E+++ A
Sbjct: 63  DEGESQIRHSGLVRTEALVAVAGGLRLDGHVRAKSHGLWVSRSNSNDTMVADALEAIVGA 122

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +++DGG   +   V K W     K+      RD KT LQE A       P Y+   ++GP
Sbjct: 123 VFVDGGYAASKRVVLKAWAPLLAKADATPPLRDPKTRLQEHAQKHKRPLPTYETIRKTGP 182

Query: 184 DHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVAAAEVL 220
           DHDP  TV       +  A A+GM  SKRAA  +AAA++L
Sbjct: 183 DHDPTITVQAHYGDRTANATAKGMHPSKRAA-SMAAAKIL 221


>gi|225019245|ref|ZP_03708437.1| hypothetical protein CLOSTMETH_03198 [Clostridium methylpentosum
           DSM 5476]
 gi|224947876|gb|EEG29085.1| hypothetical protein CLOSTMETH_03198 [Clostridium methylpentosum
           DSM 5476]
          Length = 228

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 83/226 (36%), Positives = 117/226 (51%), Gaps = 13/226 (5%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTLLFNHF 63
             EK IGY F N+ LLE+ALTHSS ++     + ++ ERLEFLGD ++ L+I+  LF +F
Sbjct: 3   NFEKTIGYTFHNQKLLEQALTHSSFTNETGRHHHKNNERLEFLGDSVVSLIIANHLFVNF 62

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EGEL+    SLV   + ++ A  +DL + + +             S   D  E+L+
Sbjct: 63  PDMPEGELTKLRASLVCDRSLAEFAGRIDLGNQLIMGKGEEHSGGRQRRSNLEDAFEALV 122

Query: 124 AALYLDGGIEVAGTFVDKYW-KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF--- 179
            A+YLDGG+E A +FV  +  K   L S     D KT LQE         PE K+++   
Sbjct: 123 GAIYLDGGLEAARSFVLGFIPKTLDLNSISRVTDYKTALQEIIQK----NPEEKLSYVLV 178

Query: 180 -RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             SGPDHD  F   V ++      G   SK+ AEQ AA + L+  G
Sbjct: 179 SESGPDHDKMFEAEVHLNSNVIGTGSGKSKKQAEQNAAKQALELMG 224


>gi|309805468|ref|ZP_07699513.1| ribonuclease III [Lactobacillus iners LactinV 09V1-c]
 gi|312872453|ref|ZP_07732522.1| ribonuclease III [Lactobacillus iners LEAF 2062A-h1]
 gi|312874441|ref|ZP_07734471.1| ribonuclease III [Lactobacillus iners LEAF 2052A-d]
 gi|312874574|ref|ZP_07734599.1| ribonuclease III [Lactobacillus iners LEAF 2053A-b]
 gi|315653376|ref|ZP_07906298.1| ribonuclease III [Lactobacillus iners ATCC 55195]
 gi|325911776|ref|ZP_08174180.1| ribonuclease III [Lactobacillus iners UPII 143-D]
 gi|308165119|gb|EFO67357.1| ribonuclease III [Lactobacillus iners LactinV 09V1-c]
 gi|311089965|gb|EFQ48384.1| ribonuclease III [Lactobacillus iners LEAF 2053A-b]
 gi|311090053|gb|EFQ48467.1| ribonuclease III [Lactobacillus iners LEAF 2052A-d]
 gi|311092035|gb|EFQ50410.1| ribonuclease III [Lactobacillus iners LEAF 2062A-h1]
 gi|315489301|gb|EFU78941.1| ribonuclease III [Lactobacillus iners ATCC 55195]
 gi|325476282|gb|EGC79444.1| ribonuclease III [Lactobacillus iners UPII 143-D]
          Length = 225

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/220 (36%), Positives = 119/220 (54%), Gaps = 7/220 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
           + L+++    F N  LLE+ALTHSS S+ +Q  ++YE+LEFLGD +L L IS  L+ HF 
Sbjct: 8   NELQEKYQIKFNNEQLLEQALTHSSYSNEHQGCKNYEKLEFLGDAVLELAISDYLYRHFP 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EGEL+   +++V  E  SQ A E   +  +++     K       ++  DV E+   
Sbjct: 68  NMNEGELTRMRSNIVRTEGFSQFATECGFSREVKLGKGEEKSGSRTRHTLLEDVFEAFNG 127

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           AL+LD G+     F+        +  G F   RD KTELQE       +  +YKV     
Sbjct: 128 ALFLDQGMPAVQHFL-HLTVYPLIAEGDFDSSRDYKTELQEKLQVNGAIDIQYKVI--DS 184

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            +  P+FTV + ++G   +QG+  SK+AAEQVAA+  LK 
Sbjct: 185 DEAQPKFTVQLIVAGENISQGIGRSKKAAEQVAASVALKN 224


>gi|308234556|ref|ZP_07665293.1| ribonuclease III [Atopobium vaginae DSM 15829]
 gi|328944154|ref|ZP_08241619.1| ribonuclease III [Atopobium vaginae DSM 15829]
 gi|327492123|gb|EGF23897.1| ribonuclease III [Atopobium vaginae DSM 15829]
          Length = 233

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 109/221 (49%), Gaps = 3/221 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH 62
           R    E+ I Y F N+ L++ A+TH S         SYERLEFLGD ILG +++T +F  
Sbjct: 6   RIKHAEQIIEYTFENKRLIQAAITHPSAVEGLPVSASYERLEFLGDSILGAIVATDMFEK 65

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L+    SLVS +T S VA EL +   I      +       TS   +V ESL
Sbjct: 66  FPGMDEGALTRMKISLVSGKTLSMVAEELGIGECIIFGDSEKGTGVRGFTSALENVYESL 125

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + ALYL+ G E    F+ +      +    K     K+ LQE    +F + P Y++   +
Sbjct: 126 VGALYLEAGYEPTVKFIRRTLTPYMVPELAKHPISPKSRLQEVCQKRFHIAPVYELEDET 185

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           GP H P+FT  V + G    +G   SK+ ++ +AA   L +
Sbjct: 186 GPAHAPQFTSAVFVDGELMGRGTGSSKKESQSIAALSALDK 226


>gi|268593250|ref|ZP_06127471.1| ribonuclease III [Providencia rettgeri DSM 1131]
 gi|291311145|gb|EFE51598.1| ribonuclease III [Providencia rettgeri DSM 1131]
          Length = 226

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/216 (35%), Positives = 116/216 (53%), Gaps = 6/216 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L++++GY F    LL +ALTH S S  + E   RLEFLGD IL  +I+  L++ F    E
Sbjct: 9   LQRKLGYQFKQNELLIQALTHRSASSKHNE---RLEFLGDSILSFVIANDLYHRFPKVDE 65

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G++S    +LV   T +++ARE +L   +R+     K       SI AD VE+LI  ++L
Sbjct: 66  GDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVEALIGGIFL 125

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V    G  HD
Sbjct: 126 DSDIQTIERIILDWYQSRLVEISPGDKQKDPKTRLQEYLQGRHLPLPNYLVVQVKGEAHD 185

Query: 187 PRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLK 221
             FT+  ++SG+  P  G+  S+R AEQ AA + LK
Sbjct: 186 QEFTIHCQVSGIDQPINGVGSSRRKAEQAAAEQALK 221


>gi|289578474|ref|YP_003477101.1| ribonuclease III [Thermoanaerobacter italicus Ab9]
 gi|297544750|ref|YP_003677052.1| ribonuclease III [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
 gi|289528187|gb|ADD02539.1| ribonuclease III [Thermoanaerobacter italicus Ab9]
 gi|296842525|gb|ADH61041.1| ribonuclease III [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
          Length = 246

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 84/224 (37%), Positives = 122/224 (54%), Gaps = 5/224 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTLLFNHF 63
           S LEK+I Y+F N+ LL +ALTHSS +H  + S    ERLEFLGD +L L+IS  L+ + 
Sbjct: 21  SELEKKINYSFKNKDLLIEALTHSSWAHEGKNSKISNERLEFLGDSVLSLVISEYLYKNR 80

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
              +EG LS     +V   + ++ ARE+ L +F+ +             S+ AD +E+L+
Sbjct: 81  KDLEEGSLSKYRAEIVCEPSLARCAREIGLGNFLLIGKGEEMTGGRERDSLLADAMEALL 140

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+YLDGG+EV    +   ++     +  G   RD KT+LQE   +       Y++    
Sbjct: 141 AAVYLDGGLEVVRNIILDLFRNIIEEVLEGLIYRDYKTKLQEVVQSMGIGKITYELVKEI 200

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           GPDH+  F   V I  +A  +G   SK+ AEQ AA E L + GI
Sbjct: 201 GPDHNKTFITKVRIGDVALGEGYGKSKKEAEQAAAMEALVKLGI 244


>gi|33593415|ref|NP_881059.1| ribonuclease III [Bordetella pertussis Tohama I]
 gi|33597819|ref|NP_885462.1| ribonuclease III [Bordetella parapertussis 12822]
 gi|33602721|ref|NP_890281.1| ribonuclease III [Bordetella bronchiseptica RB50]
 gi|81424808|sp|Q7VW39|RNC_BORPE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|81426476|sp|Q7W5J6|RNC_BORPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|81429935|sp|Q7WD32|RNC_BORBR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|33572771|emb|CAE42703.1| ribonuclease III [Bordetella pertussis Tohama I]
 gi|33574248|emb|CAE38580.1| ribonuclease III [Bordetella parapertussis]
 gi|33577163|emb|CAE35720.1| ribonuclease III [Bordetella bronchiseptica RB50]
 gi|332382824|gb|AEE67671.1| ribonuclease III [Bordetella pertussis CS]
          Length = 256

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 82/223 (36%), Positives = 121/223 (54%), Gaps = 14/223 (6%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+A+  +TLE R+ + F +++LLE+ALTH S  H  + + ERLEFLGD +L  +++ +LF
Sbjct: 1   MTAMSLATLETRLDHRFGDKALLEQALTHRS--HGARHN-ERLEFLGDSVLNFVVAAMLF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             +    EG+LS    +LV   + + +A+ LDL+ ++R+     K       SI AD VE
Sbjct: 58  ERYGKLDEGDLSRLRANLVKQASLADIAQRLDLSQYLRLGEGELKSGGFRRPSILADTVE 117

Query: 121 SLIAALYLDGGIEVA-GTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVT 178
           +L  A++LD G E A    V +Y    A    K   +DAKT LQE+   +    P+Y V 
Sbjct: 118 ALFGAVFLDAGFEAARRVIVRQYQPVMAHVDPKTLGKDAKTLLQEFLQGRKLALPQYTVV 177

Query: 179 FRSGPDHDPRFTV-----VVEISGLAPAQGMDCSKRAAEQVAA 216
              G  H  +F V      +EI  +AP      S+RAAEQ AA
Sbjct: 178 ATHGAAHSQQFEVECAIPALEIKIVAPG----ASRRAAEQSAA 216


>gi|222824476|ref|YP_002576050.1| ribonuclease III [Campylobacter lari RM2100]
 gi|222539697|gb|ACM64798.1| ribonuclease III [Campylobacter lari RM2100]
          Length = 222

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 75/220 (34%), Positives = 117/220 (53%), Gaps = 8/220 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L++R+ Y F N  LL +ALTH S    Y    ERLEFLGD ++ L++   LF  F    E
Sbjct: 5   LQERLNYHFKNEQLLIEALTHKSYKKPYNN--ERLEFLGDAVMDLVVGEFLFFKFQKESE 62

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G LS    +LV+ ++ + +A++LDL   I +S     +      SI +D  E+L+ A+YL
Sbjct: 63  GNLSKLRAALVNEKSFANLAQKLDLGECIFMSIAEENNDGRNKPSILSDAFEALMGAMYL 122

Query: 129 DGGIE----VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           + G E    +A   +++ +    + +    +D KT+LQE   A    TPEY V    GPD
Sbjct: 123 EIGFEKTKNIALNLLNEVYPH--IDTQSLFKDYKTKLQEITQANMAGTPEYIVVNAFGPD 180

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           H  +F + ++I G   A+ +  SK+ A+Q  A   L++ G
Sbjct: 181 HKKQFEIAIKIQGKEFARAIAGSKKEAQQQCAKIALEKLG 220


>gi|260913782|ref|ZP_05920258.1| ribonuclease III [Pasteurella dagmatis ATCC 43325]
 gi|260632321|gb|EEX50496.1| ribonuclease III [Pasteurella dagmatis ATCC 43325]
          Length = 225

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 79/218 (36%), Positives = 116/218 (53%), Gaps = 10/218 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTH--SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           L++++GY+F   SLLE+ALTH  +SI+H+     ERLEFLGD IL L I+  L++ F   
Sbjct: 8   LQRKLGYSFNQVSLLEQALTHRSASINHN-----ERLEFLGDAILNLTIAEALYHQFPKC 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS    +LV   T + +AR+ +L  ++ +     K       SI AD VE++I A+
Sbjct: 63  NEGELSRMRATLVREPTLAILARKFELGDYLSLGPGELKSGGFRRESILADCVEAIIGAI 122

Query: 127 YLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
            LD  +      V  ++K     +K G  ++D KT LQE+   K    P Y V    G  
Sbjct: 123 SLDSNLPKTSKIVCNWYKSLLEEIKPGDNQKDPKTRLQEYLQGKRLPLPNYNVVDIKGEA 182

Query: 185 HDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLK 221
           H   FTV   +  +     G+  S+R AEQ AA ++L+
Sbjct: 183 HCQTFTVECYVKNIDRTFIGIGASRRKAEQAAAEKILQ 220


>gi|306833964|ref|ZP_07467088.1| ribonuclease III [Streptococcus bovis ATCC 700338]
 gi|304423965|gb|EFM27107.1| ribonuclease III [Streptococcus bovis ATCC 700338]
          Length = 228

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 79/226 (34%), Positives = 119/226 (52%), Gaps = 8/226 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M AL  + L++  G  F +++LLE A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MQALD-TKLQQDFGIVFEDKTLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  +    EG+LS   + +V  E+ +  +R      FI++ +   K       +I  
Sbjct: 60  QYLFKKYPKKPEGDLSKMRSVIVREESLAGFSRYCGFDEFIKLGNGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D+ E+ + AL +D G+E    F+++    +  K G F R  D KT LQE       VT +
Sbjct: 120 DLFEAFLGALLMDQGVEAVNKFLNQVMIPQVEK-GNFERVKDYKTTLQELLQGHGDVTID 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           Y+V+  SGP H   F V V ++  A +QG+  SK+ AEQ AA   L
Sbjct: 179 YRVSNESGPAHAKVFEVTVYVNDKAKSQGIGKSKKLAEQDAAKNAL 224


>gi|119358263|ref|YP_912907.1| ribonuclease III [Chlorobium phaeobacteroides DSM 266]
 gi|119355612|gb|ABL66483.1| RNAse III [Chlorobium phaeobacteroides DSM 266]
          Length = 273

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 80/226 (35%), Positives = 114/226 (50%), Gaps = 16/226 (7%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ------ESYERLEFLGDRILGLLISTLLFNH 62
           LE   G    N  L + ALTH S+ H Y+      +S +RLEFLGD +LGLLIS  LF +
Sbjct: 44  LETCAGSKGGNLFLYQTALTHRSVVHDYEHATPAVQSNQRLEFLGDAVLGLLISDYLFRN 103

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F  ++EGELS     +V+ ++ +  AR + L   + +     K+      S  AD  ESL
Sbjct: 104 FPDSREGELSSNRAKIVNRKSLAGFARSIGLGKHLIIGESADKNKIRSSESALADAFESL 163

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR------RDAKTELQEWAHAKFGVTPEYK 176
           I A+YLD G++ A  FV K   + A     FR       + K++L E+  +     P YK
Sbjct: 164 IGAIYLDKGLDAAFAFVMKQITEHA----DFRSIVAAEHNYKSQLIEYTQSHHLPPPVYK 219

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           V    G +H+  FT+ V +      QG    K+ AEQ+AA E + R
Sbjct: 220 VIAEEGAEHEKTFTIEVSVDDRQMGQGTAPRKKDAEQLAAREAIDR 265


>gi|171909524|ref|ZP_02924994.1| putative Ribonuclease III [Verrucomicrobium spinosum DSM 4136]
          Length = 238

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 70/191 (36%), Positives = 101/191 (52%), Gaps = 5/191 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +LE RI Y F    LL++ALTH S+   S + Q   +RLE+LGD +L L++S  +++ F 
Sbjct: 3   SLESRIAYQFKQPELLQEALTHPSLPYESKNPQRHNQRLEYLGDAVLQLVLSEAIYHQFP 62

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG L+     LV   T + +AR+L L   + +      +      S  ADV+ES+I 
Sbjct: 63  LDDEGLLTKLRTRLVQTRTLAHIARQLCLGRDLLLGKGEESNGGRSRESTLADVMESIIG 122

Query: 125 ALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YLDGGIE    FV ++W     AL+      + K +LQE    + G TP Y++    G
Sbjct: 123 AVYLDGGIEAVRPFVLQHWSHDLAALQHSPVELNPKGQLQELLQGEGGNTPTYRIIAAEG 182

Query: 183 PDHDPRFTVVV 193
           PDH   F  VV
Sbjct: 183 PDHQKVFQAVV 193


>gi|88812349|ref|ZP_01127599.1| ribonuclease III [Nitrococcus mobilis Nb-231]
 gi|88790356|gb|EAR21473.1| ribonuclease III [Nitrococcus mobilis Nb-231]
          Length = 226

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/220 (35%), Positives = 120/220 (54%), Gaps = 6/220 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y  L++R+GY F+  +LL +ALTH S   ++  + ERLEFLGD +L  +++  +F+    
Sbjct: 5   YDRLQERLGYRFSESTLLVRALTHRS---AFGPNNERLEFLGDSVLNFVVAAEVFDRRKQ 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A+EGELS     LV+  + + +AREL L   +R+     K       SI +D +E+++ A
Sbjct: 62  AREGELSRLRAKLVNQASLADIARELALGEALRLGGGEMKAGGQRRDSILSDTLEAIVGA 121

Query: 126 LYLDGGIEVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YLD G  +    + + +  + R L S +  +D KT LQE   +     PEY+V   +G 
Sbjct: 122 VYLDAGFAICREVIRRLYGNRLRELPSIRELKDPKTRLQEHLQSIRLPLPEYRVLEIAGR 181

Query: 184 DHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKR 222
            H   F V   I G+     G+  S+R AEQ AAA +L+R
Sbjct: 182 AHAQTFQVECRIIGVETVTHGLANSRRQAEQKAAASMLQR 221


>gi|121595570|ref|YP_987466.1| ribonuclease III [Acidovorax sp. JS42]
 gi|120607650|gb|ABM43390.1| RNAse III [Acidovorax sp. JS42]
          Length = 228

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 73/197 (37%), Positives = 106/197 (53%), Gaps = 5/197 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M     STL++R+ + F++ SLL++ALTH S S  + E   RLEFLGD +L L +S+LLF
Sbjct: 1   MQPASLSTLQQRLQHQFSDASLLQRALTHRSFSADHNE---RLEFLGDSVLSLAVSSLLF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                  EGELS     LV  ++  Q+A  L L   +R+     K       SI AD +E
Sbjct: 58  RRMRDLPEGELSRVRALLVKQDSLHQIAVRLQLPPVLRLGEGEAKSGGKLRPSILADALE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD G E A   V + ++   L  +  +  +DAKT LQEW   +    P+Y+V 
Sbjct: 118 AIIGAVYLDAGYECAEQLVHRLFEGVELSPRLQEAAKDAKTALQEWLQGRKMNLPQYRVV 177

Query: 179 FRSGPDHDPRFTVVVEI 195
             +G  H+  F V  E+
Sbjct: 178 STTGAAHNQVFHVECEV 194


>gi|222111791|ref|YP_002554055.1| ribonuclease iii [Acidovorax ebreus TPSY]
 gi|221731235|gb|ACM34055.1| ribonuclease III [Acidovorax ebreus TPSY]
          Length = 228

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 73/197 (37%), Positives = 106/197 (53%), Gaps = 5/197 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M     STL++R+ + F++ SLL++ALTH S S  + E   RLEFLGD +L L +S+LLF
Sbjct: 1   MQPASLSTLQQRLQHQFSDASLLQRALTHRSFSADHNE---RLEFLGDSVLSLAVSSLLF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                  EGELS     LV  ++  Q+A  L L   +R+     K       SI AD +E
Sbjct: 58  RRMRDLPEGELSRVRALLVKQDSLHQIAVRLQLPPVLRLGEGEAKSGGKLRPSILADALE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD G E A   V + ++   L  +  +  +DAKT LQEW   +    P+Y+V 
Sbjct: 118 AIIGAVYLDAGYECAEQLVHRLFEGVELSPRLQEAAKDAKTALQEWLQGRKMNLPQYRVV 177

Query: 179 FRSGPDHDPRFTVVVEI 195
             +G  H+  F V  E+
Sbjct: 178 STTGAAHNQVFHVECEV 194


>gi|126208025|ref|YP_001053250.1| ribonuclease III [Actinobacillus pleuropneumoniae L20]
 gi|189043287|sp|A3MZQ9|RNC_ACTP2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|126096817|gb|ABN73645.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 5b str.
           L20]
          Length = 223

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 83/223 (37%), Positives = 117/223 (52%), Gaps = 8/223 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++   L+K++ Y F N   L +ALTH S      ++ ERLEFLGD IL   I   LF  F
Sbjct: 1   MQLERLQKKLSYQFTNLDYLLQALTHRSAGA---KNNERLEFLGDSILNFAIGKALFEKF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EGELS    +LV  +T + +AR+  L  ++R+ +   K       SI +D VE++I
Sbjct: 58  PKANEGELSRMRATLVREQTLAILARQFGLGEYMRLGAGELKSGGYRRESILSDCVEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRAL---KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           AA+YLD G++ A   V   W Q  L   K G  ++D KT LQE+   +    P Y+V   
Sbjct: 118 AAIYLDAGMDKAIEQVH-LWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVLDI 176

Query: 181 SGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKR 222
            G  H+  F V  +I  L     G+  S+R AEQ AA +VL +
Sbjct: 177 KGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAK 219


>gi|27364934|ref|NP_760462.1| ribonuclease III [Vibrio vulnificus CMCP6]
 gi|31076872|sp|Q8DC76|RNC_VIBVU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|27361080|gb|AAO09989.1| ribonuclease III [Vibrio vulnificus CMCP6]
          Length = 225

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 73/204 (35%), Positives = 109/204 (53%), Gaps = 6/204 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L +++GY F +  LL  ALTH S +  + E   RLEFLGD IL  +I+  L++ F    E
Sbjct: 8   LTRQLGYQFQDDELLNLALTHRSANSKHNE---RLEFLGDSILSFVIADELYHRFPKVNE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G++S    +LV   T +++ RE  L  ++++     K       SI AD VE++I A+YL
Sbjct: 65  GDMSRMRATLVRGNTLAELGREFGLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAVYL 124

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D  +EV    V  ++  R  A+K G  ++D KT LQE+   +    P Y VT   G  H+
Sbjct: 125 DSDLEVVRGIVLNWYTSRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEAHN 184

Query: 187 PRFTVVVEISGL-APAQGMDCSKR 209
             FTV  +I+G+  P  G   S+R
Sbjct: 185 QEFTVECDIAGMDKPVVGRGTSRR 208


>gi|67459568|ref|YP_247192.1| ribonuclease III [Rickettsia felis URRWXCal2]
 gi|75536032|sp|Q4UKA8|RNC_RICFE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|67005101|gb|AAY62027.1| Ribonuclease III [Rickettsia felis URRWXCal2]
          Length = 225

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 115/221 (52%), Gaps = 5/221 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQES--YERLEFLGDRILGLLISTLLFN 61
           +  LEK +GY+F N+ LL +AL+H S+   H Y++   YERLEFLGD +L L+++ +LF 
Sbjct: 4   FEKLEKLLGYSFKNKELLIEALSHPSLRQHHEYKDDKDYERLEFLGDAVLNLVVTEILFK 63

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +F +  EG L+   + LV  ET   V  +L L  +I ++            +   +  E+
Sbjct: 64  NFANYNEGNLAKIRSYLVCKETICVVGTKLTLKDYIIMTHGEEVAGGRDNPNNIENATEA 123

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           LIAA+YLD  IE     + K W +          D KT LQEWA A     P Y++  R 
Sbjct: 124 LIAAIYLDSNIETTRNIIGKLWAEFIKIQNLTDYDPKTALQEWAQASSHHLPIYRLIKRE 183

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           G  H   FTV+V++       G   S + AE+ AA ++L +
Sbjct: 184 GAAHSSTFTVLVKVKDYKQI-GTGHSIKEAEKNAARKLLHK 223


>gi|295111283|emb|CBL28033.1| ribonuclease III, bacterial [Synergistetes bacterium SGP1]
          Length = 251

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 117/217 (53%), Gaps = 5/217 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           + L+  +GY+F +  LLE+AL H+S +  H    S ERLEFLGD +LG +++  L+  + 
Sbjct: 29  AALQAALGYSFRDEGLLEEALCHASFANEHGLAVSNERLEFLGDSVLGFVVARALYRLYP 88

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            A+EG+L+ +   LV   +    AREL+L   I     +R +  +  TS+  D VE+L+ 
Sbjct: 89  EAREGDLTQKRAELVCGRSLRDRARELNLPPLILHGHSVRDE--ALPTSMCEDAVEALLG 146

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A+ LDGG++ A   + + + Q A    +     K+ LQ W  A+    P Y++   +GP 
Sbjct: 147 AVCLDGGVQAAEGVIGRLFLQEAEVRAETDVSPKSRLQTWLQARRIPLPTYELVSVTGPS 206

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           H P F V + ++G+        +++ AE  AA  VL+
Sbjct: 207 HAPSFRVRLRVNGVE-HTACGSTRKGAESDAAERVLE 242


>gi|124515064|gb|EAY56575.1| ribonuclease III [Leptospirillum rubarum]
          Length = 247

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 117/224 (52%), Gaps = 9/224 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISH-----SYQESYERLEFLGDRILGLLISTLLFN 61
           S LE R+ Y F    LLE+A TH S  +         + ERLEFLGD +LGL+++  L  
Sbjct: 8   SELEDRLRYRFRKIDLLEEATTHKSFMNEGRRLGVTRNNERLEFLGDTVLGLVVAEYLMV 67

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +    EG LS     +VS  T + V+R L +  F+ +            +S+ AD +E+
Sbjct: 68  TYPKYPEGILSKFKGRVVSEPTLASVSRALGIGGFLLIGKGEELTQGREKSSLLADAMEA 127

Query: 122 LIAALYLDGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +IAA+YLD G++ A TF+  +++   ++ +     + D KT+LQE+   +    P Y+V 
Sbjct: 128 VIAAIYLDSGLDAARTFIIGHFRSVIEQTVHEDSIQ-DYKTDLQEYCQRELETLPVYQVM 186

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            + GPDH   F V V I G    +G   SK+ AEQ AA + L R
Sbjct: 187 DQRGPDHQKEFDVAVLIRGKIYGEGSGKSKKEAEQKAAKDALSR 230


>gi|15892080|ref|NP_359794.1| ribonuclease III [Rickettsia conorii str. Malish 7]
 gi|22654066|sp|Q92JB0|RNC_RICCN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|15619202|gb|AAL02695.1| ribonuclease III [Rickettsia conorii str. Malish 7]
          Length = 227

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 118/223 (52%), Gaps = 9/223 (4%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQES--YERLEFLGDRILGLLISTLLFN 61
           +  LEK + Y+F N+ LL +AL+H S+   H Y++   YERLEFLGD +L L+I+ +LF 
Sbjct: 4   FEKLEKLLSYSFKNKELLIEALSHPSLRQHHEYKDDKDYERLEFLGDAVLNLVITEILFR 63

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA--DVV 119
           +F +  EG L+   + LV  ET   V  +L L ++I ++    ++V     ++    +  
Sbjct: 64  NFANYNEGNLAKIRSYLVCKETICMVGAKLTLKNYIIMTHG--EEVAGGRDNLNNIENAT 121

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E+LIAA+YLD  IE     ++  W +          D KT LQEWA A     P Y++  
Sbjct: 122 EALIAAIYLDSNIETTHDIIENLWAEFIKVQNLTDYDPKTALQEWAQASDHHLPIYRLIK 181

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           R G  H   FTV+V++       G   + + AE+ AA  +L R
Sbjct: 182 REGASHSSTFTVLVKVKDYEQT-GTGHTIKEAEKNAARSLLHR 223


>gi|288905744|ref|YP_003430966.1| Ribonuclease III [Streptococcus gallolyticus UCN34]
 gi|306831841|ref|ZP_07464997.1| ribonuclease III [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325978776|ref|YP_004288492.1| ribonuclease III [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
 gi|288732470|emb|CBI14042.1| Ribonuclease III [Streptococcus gallolyticus UCN34]
 gi|304426039|gb|EFM29155.1| ribonuclease III [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325178704|emb|CBZ48748.1| ribonuclease III [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
          Length = 228

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 79/226 (34%), Positives = 119/226 (52%), Gaps = 8/226 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M AL  + L++  G  F +++LLE A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MQALD-TKLQRDFGIVFEDKTLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  +    EG+LS   + +V  E+ +  +R      FI++ +   K       +I  
Sbjct: 60  QYLFKKYPKKPEGDLSKMRSVIVREESLAGFSRYCGFDEFIKLGNGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D+ E+ + AL +D G+E    F+++    +  K G F R  D KT LQE       VT +
Sbjct: 120 DLFEAFLGALLMDQGVEAVNKFLNQVMIPQVEK-GNFERVKDYKTTLQELLQGHGDVTID 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           Y+V+  SGP H   F V V ++  A +QG+  SK+ AEQ AA   L
Sbjct: 179 YRVSNESGPAHAKVFEVTVYVNDEAKSQGIGRSKKLAEQDAAKNAL 224


>gi|320155320|ref|YP_004187699.1| ribonuclease III [Vibrio vulnificus MO6-24/O]
 gi|56749444|sp|Q7MHN8|RNC_VIBVY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|319930632|gb|ADV85496.1| ribonuclease III [Vibrio vulnificus MO6-24/O]
          Length = 225

 Score =  118 bits (295), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 73/204 (35%), Positives = 109/204 (53%), Gaps = 6/204 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L +++GY F +  LL  ALTH S +  + E   RLEFLGD IL  +I+  L++ F    E
Sbjct: 8   LTRQLGYQFQDDELLNLALTHRSANSKHNE---RLEFLGDSILSFVIADELYHRFPKVNE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G++S    +LV   T +++ RE  L  ++++     K       SI AD VE++I A+YL
Sbjct: 65  GDMSRMRATLVRGNTLAELGREFGLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAVYL 124

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D  +EV    V  ++  R  A+K G  ++D KT LQE+   +    P Y VT   G  H+
Sbjct: 125 DSDLEVVRGIVLNWYASRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEAHN 184

Query: 187 PRFTVVVEISGL-APAQGMDCSKR 209
             FTV  +I+G+  P  G   S+R
Sbjct: 185 QEFTVECDIAGMDKPVVGRGTSRR 208


>gi|270304349|gb|ACZ71259.1| RNAse type III [Escherichia coli BL21]
          Length = 226

 Score =  118 bits (295), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 123/225 (54%), Gaps = 6/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH   S  + E   RLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFNHQELLQQALTHRRASRKHNE---RLEFLGDSILSYVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+ +   K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGTGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++L+  I+     +  +++ R   +  G  ++D KT + E+   +    P Y V 
Sbjct: 118 ALIGGVFLESDIQTVEKLILNWYQTRVDEISPGDKQKDPKTRVHEYLQGRHLPLPTYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222
              G  HD  FT+  ++SGL+ P  G   S+R AEQ AA + LK+
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQALKK 222


>gi|221194650|ref|ZP_03567707.1| ribonuclease III [Atopobium rimae ATCC 49626]
 gi|221185554|gb|EEE17944.1| ribonuclease III [Atopobium rimae ATCC 49626]
          Length = 243

 Score =  118 bits (295), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 87/224 (38%), Positives = 108/224 (48%), Gaps = 3/224 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
           R    EK   + F  R L+E ALTH S         SYERLEFLGD ILG +++T LF  
Sbjct: 6   RIRAAEKICNHVFKRRDLIEAALTHPSAVEDKPVSASYERLEFLGDSILGAIVATDLFER 65

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +    EGEL+    SLVS  T S VA  L +   I      R      M S   +V ES+
Sbjct: 66  YPEMDEGELTRLKISLVSGHTLSLVAEALGIGPLIITGVSERGTGGRGMRSALENVYESI 125

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFRS 181
           + ALYLD G E    FV +        +   R    K+ LQE   A    TPEY++   S
Sbjct: 126 VGALYLDAGYEPTHEFVIRTLAPHISPALAERSVSPKSRLQEAVQANGKSTPEYELVSES 185

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           GP H P F  VV + G    +G   SK+AAE  AA + L R G+
Sbjct: 186 GPAHTPTFISVVSVDGCKVGRGQGHSKKAAEAAAAQDALVRLGV 229


>gi|293391848|ref|ZP_06636182.1| ribonuclease III [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290952382|gb|EFE02501.1| ribonuclease III [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 226

 Score =  118 bits (295), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 113/228 (49%), Gaps = 6/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M   +   L+++I Y F N  LL++ALTH S  H + E   RLEFLGD IL L I   LF
Sbjct: 1   MKENQLERLQRQINYRFQNIELLKQALTHRSAGHQHNE---RLEFLGDAILNLTIGEALF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EGELS    +LV   T + +AR+  L  +I +     K       SI AD VE
Sbjct: 58  HQFPKCNEGELSRMRATLVREPTLALLARDFKLGDYILLGQGELKSGGFRRESILADCVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+ LD  +  A   V ++++   + +K G  ++DAKT LQE+        P Y + 
Sbjct: 118 AIIGAISLDSNLTNATQIVCQWYQNLLKEIKPGDNQKDAKTRLQEYLQGNRLPLPTYNIV 177

Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREGI 225
              G  H+  F V   I        G   S+R AEQ AA ++L+   I
Sbjct: 178 NIQGEAHNQLFIVECSIQNSDRTFIGKGSSRRKAEQAAAEQILQELNI 225


>gi|319787580|ref|YP_004147055.1| ribonuclease III [Pseudoxanthomonas suwonensis 11-1]
 gi|317466092|gb|ADV27824.1| ribonuclease III [Pseudoxanthomonas suwonensis 11-1]
          Length = 230

 Score =  118 bits (295), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 81/218 (37%), Positives = 118/218 (54%), Gaps = 6/218 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + +  RIG+AFA+ SLL++ALTH S    + E   RLEFLGD ++ L+ +  L+  +  A
Sbjct: 7   TVVRDRIGHAFADPSLLQQALTHRSAGSPHNE---RLEFLGDAVVNLIAAEALYQRWPKA 63

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG L+     LV   + + +AREL L   + +     K       SI AD +E+++AA+
Sbjct: 64  DEGVLTRARAELVREASLAVIARELQLGERLTLGPGELKSGGFRRDSILADALEAVVAAI 123

Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD G +     V  +++Q   AL  G+  +DAKT LQEW   +    P Y++   SG D
Sbjct: 124 YLDAGYDACRAHVLPWFEQSIAALPVGQPGKDAKTRLQEWLQGRGKPLPAYELVSESGED 183

Query: 185 HDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLK 221
           H   F     +S   A A+G   S+R AEQ AAA VL+
Sbjct: 184 HAKVFLARCTLSEPPASAEGQGTSRRLAEQAAAAAVLE 221


>gi|56459918|ref|YP_155199.1| RNase III, dsRNA-specific ribonuclease [Idiomarina loihiensis L2TR]
 gi|81363596|sp|Q5R106|RNC_IDILO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|56178928|gb|AAV81650.1| Rnase III, dsRNA-specific ribonuclease [Idiomarina loihiensis L2TR]
          Length = 229

 Score =  118 bits (295), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 114/206 (55%), Gaps = 6/206 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + LEK +GY+F  + LL +A+TH S S ++ E   RLEFLGD ILGL+I+  L+  F   
Sbjct: 9   TELEKIVGYSFEQQGLLHQAMTHRSASSTHNE---RLEFLGDSILGLVIAEALYQKFPKV 65

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+LS    ++V   + +++ +++ L  F+ +     K       SI AD VE++I A+
Sbjct: 66  AEGDLSRMRAAIVCGRSLAKLGKKMGLGDFLSLGQGELKSGGYRRESILADAVEAIIGAI 125

Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD  ++     +  +++ +   ++ G  ++D KT LQE   A+    PEY V    G  
Sbjct: 126 YLDSDMDTIRQVILNWFEPQLTLIEPGTSQKDPKTRLQELLQARQKPLPEYDVVATQGQA 185

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKR 209
           H+ +FTV   + G+ +P +G   S+R
Sbjct: 186 HNQQFTVNCSVEGIESPFKGTGTSRR 211


>gi|145300361|ref|YP_001143202.1| ribonuclease III [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142853133|gb|ABO91454.1| ribonuclease III [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 223

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 120/222 (54%), Gaps = 6/222 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++ + L+ R+G+ F ++ LL +ALTH S    + E   RLEFLGD IL L+I+  LF+ F
Sbjct: 3   IKMNRLQSRLGHVFHDKELLTRALTHRSAGSRHNE---RLEFLGDSILSLVIADALFHRF 59

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EG+LS    +LV  +T +++ RE DL   + +     K       SI AD VE++I
Sbjct: 60  PQAAEGDLSRMRATLVREKTLAELGREFDLGDDLILGPGELKSGGFRRESILADTVEAVI 119

Query: 124 AALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+YLD  +E     +  ++  R   +K G  ++D KT LQE         P Y VT   
Sbjct: 120 GAVYLDTDLEAVRVLLLSWYASRLDEIKPGIEQKDPKTRLQEILQGSRKSLPTYTVTNVK 179

Query: 182 GPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222
           G  H+  FTV  ++ GL  P  G+  S+R AEQ AA + L+R
Sbjct: 180 GEAHNQEFTVQCDVEGLDGPLVGVGTSRRKAEQAAAQQALER 221


>gi|268318202|ref|YP_003291921.1| ribonuclease III [Rhodothermus marinus DSM 4252]
 gi|262335736|gb|ACY49533.1| ribonuclease III [Rhodothermus marinus DSM 4252]
          Length = 260

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 78/210 (37%), Positives = 110/210 (52%), Gaps = 6/210 (2%)

Query: 19  NRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
           N +L E+ALTH S+      S+  S ERLEFLGD +LG +++  L+ HF    EG L+  
Sbjct: 39  NAALYEQALTHRSVLRGQPDSHLHSNERLEFLGDAVLGFVVAAYLYEHFPDRNEGFLTRL 98

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
              LV+ E  +Q AR L L + +R+S ++ +       SI +D  E+L+ A+YLD G+E 
Sbjct: 99  RAKLVNREALAQAARRLGLGAHVRLSENMERAGGRDNDSILSDAFEALVGAIYLDLGLEA 158

Query: 135 AGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
           A  FV++            RR  + K+ L E+A A+    P Y+V    GP H   FTV 
Sbjct: 159 ARAFVERALLAPLDLEALARRPDNYKSLLLEFAQARGWPQPRYRVVAEEGPSHARTFTVE 218

Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             I      +G   SK+ AEQ AA E L R
Sbjct: 219 AWIGNRRLGRGTAGSKKQAEQQAAREALAR 248


>gi|313888515|ref|ZP_07822182.1| ribonuclease III [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845544|gb|EFR32938.1| ribonuclease III [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 231

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 80/230 (34%), Positives = 119/230 (51%), Gaps = 11/230 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M+      LE+++ Y F ++ LLE ALTHSS  +  +    ES ERLEFLGD +LGL+I 
Sbjct: 1   MTFSNLKNLERKLNYDFKDKGLLETALTHSSYVNENKMKQYESNERLEFLGDAVLGLVIG 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
              + +F    EG L+      V+ +    +A+ L+L  FIR     +K+  S   S  A
Sbjct: 61  EYFYKNFPKDLEGSLTKMRAESVNEKVLFFIAKGLELGDFIRFGKGEKKNGGSKRESTSA 120

Query: 117 DVVESLIAALYLDGGIEVAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT 172
           D +E+LI A++LD     A   V    D++ K+ A K   F  D KT LQE    + G  
Sbjct: 121 DALEALIGAIFLDSNFNNAKKIVLNLFDEFLKEDAYKL--FNVDFKTMLQEEVQ-RSGQK 177

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            EYK+    GPD+D  F   + +  +   +G   +K+ ++Q AA E L+R
Sbjct: 178 AEYKLVREEGPDNDKTFFTELYLDEVLAGKGSGKTKKESQQEAAREALER 227


>gi|319760660|ref|YP_004124598.1| ribonuclease III [Candidatus Blochmannia vafer str. BVAF]
 gi|318039374|gb|ADV33924.1| ribonuclease III [Candidatus Blochmannia vafer str. BVAF]
          Length = 231

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 122/224 (54%), Gaps = 6/224 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           MS+L ++ L+ ++GY F    LLE ALTH S S+ + E   RLEFLGD IL  +++ LL+
Sbjct: 1   MSSLDFNVLQGKLGYFFCKLDLLELALTHRSFSNQHNE---RLEFLGDAILNYVVANLLY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + ++   EG++S   ++LV ++T  ++A+E ++  ++++     K+      SI ++ VE
Sbjct: 58  HRYNCISEGDMSRIRSNLVCSKTLVRLAKEFNVGEYLKLGQGELKNGGISRESILSNTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I  ++LD  ++     ++ ++     A+     ++D KT LQE+        P Y V 
Sbjct: 118 AIIGGVFLDSNMKTVEILINNWYLCHLNAINFMNKQKDPKTRLQEYLQRHGCPLPIYYVN 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221
              G  H   FT+  +IS L  P+ G   S + AEQ AA   LK
Sbjct: 178 RIQGKAHSQMFTIFCQISQLTDPSIGYGSSIQKAEQSAAENALK 221


>gi|322420696|ref|YP_004199919.1| ribonuclease III [Geobacter sp. M18]
 gi|320127083|gb|ADW14643.1| ribonuclease III [Geobacter sp. M18]
          Length = 224

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 79/207 (38%), Positives = 121/207 (58%), Gaps = 2/207 (0%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           LE ++GY F+NR LLE+ALTH + ++ +  +  +RLEF GD +L  L+S LL   F  ++
Sbjct: 4   LEGKLGYRFSNRELLEEALTHRTYANEAGGKDNQRLEFFGDAVLDFLLSDLLLQRFPDSR 63

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EGEL+    +LV   + +++A  L+L + +R+     K       S+ AD  E+L+AALY
Sbjct: 64  EGELTKMRAALVDEVSLARIAAGLELGAALRLGRGEEKGGGRQKRSLLADAFEALLAALY 123

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           LDGG++ A   V + ++    +      RDAKTELQE A    G  P Y++   +GPDHD
Sbjct: 124 LDGGVDTARRVVHELFEPLLCRPEILCGRDAKTELQERARLLRGKLPRYQLKQVTGPDHD 183

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            RFTV + +      +G+  +K+ AEQ
Sbjct: 184 RRFTVEIFLGSELMGEGVGRTKKEAEQ 210


>gi|318056548|ref|ZP_07975271.1| ribonuclease III [Streptomyces sp. SA3_actG]
 gi|318076722|ref|ZP_07984054.1| ribonuclease III [Streptomyces sp. SA3_actF]
          Length = 275

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 81/220 (36%), Positives = 121/220 (55%), Gaps = 8/220 (3%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           +A  ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L
Sbjct: 19  AASSHTLLEGRLGYHLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 77

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +       EG+L+    ++V++   ++V+R LDL +FIR+             SI AD +
Sbjct: 78  YRTHPDLPEGQLAKLRAAVVNSRALAEVSRGLDLGAFIRLGRGEEGTGGRDKASILADTL 137

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEW-AHAKFGVTPEYK 176
           E++I A+YLD G++ A   V + +     KS +     D KT LQE  A    GV PEY 
Sbjct: 138 EAVIGAVYLDQGLDKAAELVHRLFDPLIEKSAELGAGLDWKTSLQELTAMEGLGV-PEYL 196

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           VT   GPDH+  FT    + G++   G   SK+ AEQ AA
Sbjct: 197 VT-EEGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 235


>gi|261868615|ref|YP_003256537.1| ribonuclease III [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261413947|gb|ACX83318.1| ribonuclease III [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 226

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 113/228 (49%), Gaps = 6/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M   +   L+++I Y F N  LL++ALTH S  H + E   RLEFLGD IL L I   LF
Sbjct: 1   MKENQLERLQRQINYRFQNIELLKQALTHRSAGHQHNE---RLEFLGDAILNLTIGEALF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EGELS    +LV   T + +AR+  L  +I +     K       SI AD VE
Sbjct: 58  HQFPKCNEGELSRMRATLVREPTLALLARDFKLGDYILLGQGELKSGGFRRESILADCVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+ LD  +  A   V ++++   + +K G  ++DAKT LQE+        P Y + 
Sbjct: 118 AIIGAISLDSSLTNATQIVCQWYQNLLKEIKPGDNQKDAKTRLQEYLQGNRLPLPTYNIV 177

Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREGI 225
              G  H+  F V   I        G   S+R AEQ AA ++L+   I
Sbjct: 178 NIQGEAHNQLFIVECSIQNSDRTFIGKGSSRRKAEQAAAEQILQELNI 225


>gi|302522137|ref|ZP_07274479.1| ribonuclease III [Streptomyces sp. SPB78]
 gi|302431032|gb|EFL02848.1| ribonuclease III [Streptomyces sp. SPB78]
          Length = 286

 Score =  117 bits (294), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 81/220 (36%), Positives = 121/220 (55%), Gaps = 8/220 (3%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           +A  ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L
Sbjct: 30  AASSHTLLEGRLGYHLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 88

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +       EG+L+    ++V++   ++V+R LDL +FIR+             SI AD +
Sbjct: 89  YRTHPDLPEGQLAKLRAAVVNSRALAEVSRGLDLGAFIRLGRGEEGTGGRDKASILADTL 148

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEW-AHAKFGVTPEYK 176
           E++I A+YLD G++ A   V + +     KS +     D KT LQE  A    GV PEY 
Sbjct: 149 EAVIGAVYLDQGLDKAAELVHRLFDPLIEKSAELGAGLDWKTSLQELTAMEGLGV-PEYL 207

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           VT   GPDH+  FT    + G++   G   SK+ AEQ AA
Sbjct: 208 VT-EEGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 246


>gi|289768866|ref|ZP_06528244.1| ribonuclease III [Streptomyces lividans TK24]
 gi|289699065|gb|EFD66494.1| ribonuclease III [Streptomyces lividans TK24]
          Length = 276

 Score =  117 bits (294), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 77/215 (35%), Positives = 116/215 (53%), Gaps = 6/215 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
           ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L+   
Sbjct: 31  HTLLEGRLGYQLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTH 89

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+L+    ++V++   ++V R L+L SFIR+             SI AD +E++I
Sbjct: 90  PDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTLEAVI 149

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+YLD G++ A   V + +     KS       D KT LQE    +    PEY VT  +
Sbjct: 150 GAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLVT-ET 208

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           GPDH+  FT    + G++   G   SK+ AEQ AA
Sbjct: 209 GPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 243


>gi|21223928|ref|NP_629707.1| ribonuclease III [Streptomyces coelicolor A3(2)]
 gi|256784973|ref|ZP_05523404.1| ribonuclease III [Streptomyces lividans TK24]
 gi|7531197|sp|Q9ZBQ7|RNC_STRCO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|4007731|emb|CAA22415.1| ribonuclease III [Streptomyces coelicolor A3(2)]
          Length = 272

 Score =  117 bits (294), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 77/215 (35%), Positives = 116/215 (53%), Gaps = 6/215 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
           ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L+   
Sbjct: 27  HTLLEGRLGYQLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTH 85

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+L+    ++V++   ++V R L+L SFIR+             SI AD +E++I
Sbjct: 86  PDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTLEAVI 145

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+YLD G++ A   V + +     KS       D KT LQE    +    PEY VT  +
Sbjct: 146 GAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLVT-ET 204

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           GPDH+  FT    + G++   G   SK+ AEQ AA
Sbjct: 205 GPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 239


>gi|121605952|ref|YP_983281.1| ribonuclease III [Polaromonas naphthalenivorans CJ2]
 gi|120594921|gb|ABM38360.1| RNAse III [Polaromonas naphthalenivorans CJ2]
          Length = 233

 Score =  117 bits (294), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 81/216 (37%), Positives = 113/216 (52%), Gaps = 8/216 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L+KR+ + FA   LL +ALTH S S  + E   R+EFLGD +L L ++ LL+       E
Sbjct: 14  LQKRLQHEFAKPKLLVQALTHRSFSSDHNE---RIEFLGDSVLNLAVAGLLYEQLSELPE 70

Query: 69  GELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           G+LS VR N LV  +T  Q+A  L L   +R+     +       S+ AD +E++I A+Y
Sbjct: 71  GDLSRVRAN-LVKQDTLHQLAVVLGLPDLLRLGEGEARSGGKNRPSMLADALEAVIGAVY 129

Query: 128 LDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           LD G + A   V + +K  Q   +     +D KTELQEW   +    P YKV    G  H
Sbjct: 130 LDAGYDQADQLVRRLFKDVQVNPQMKAIGKDPKTELQEWLQGRKMRLPLYKVVSTMGAAH 189

Query: 186 DPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVL 220
              F V  EI+    A+ G+  S+RA EQ AA  +L
Sbjct: 190 QQTFEVECEIAEFGRAERGIGVSRRAGEQAAATAML 225


>gi|166031773|ref|ZP_02234602.1| hypothetical protein DORFOR_01474 [Dorea formicigenerans ATCC
           27755]
 gi|166028226|gb|EDR46983.1| hypothetical protein DORFOR_01474 [Dorea formicigenerans ATCC
           27755]
          Length = 233

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 76/216 (35%), Positives = 115/216 (53%), Gaps = 5/216 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
           LE RIGY F + +LL+KA++HSS  +       E  ERLEFLGD +L L+ S  LF    
Sbjct: 10  LEHRIGYTFQDFALLKKAMSHSSYVNEEHLPKYECNERLEFLGDAVLELVSSEFLFFEHP 69

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EGEL+    S+V     +  ARE++L  ++ +             S+ +D +E+LI 
Sbjct: 70  TTPEGELTKTRASMVCEPALAFCAREIELGEYLLLGKGEDATGGRKRESVTSDAMEALIG 129

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A+Y+DGG   A  F++++   + L++ K   D+KT LQE   A F     Y +    GPD
Sbjct: 130 AIYVDGGFANAKEFINRFI-LKDLENKKLFYDSKTILQEIVQAHFKEELSYHLVGEEGPD 188

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           HD  F V ++I       G   +K++AEQ AA + +
Sbjct: 189 HDKTFQVELQIGEQVYGIGKGRTKKSAEQEAAYKTI 224


>gi|160892686|ref|ZP_02073476.1| hypothetical protein CLOL250_00216 [Clostridium sp. L2-50]
 gi|156865727|gb|EDO59158.1| hypothetical protein CLOL250_00216 [Clostridium sp. L2-50]
          Length = 230

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 117/224 (52%), Gaps = 6/224 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M+  R+  +E  IGY F +  LL  ALTH S ++  +    ESYER EFLGD IL  ++S
Sbjct: 1   MNTERFHNIEDIIGYTFRDLDLLVTALTHKSYANERKINKVESYERSEFLGDAILEFVVS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+ ++    EG+L+    SLV   T SQ+++EL    ++ +S            SI  
Sbjct: 61  EYLYQNYPEYPEGKLTKLRASLVCEFTLSQISKELKFGHYVLLSKGEDLTGGRNRNSIMC 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D+ E+++ A+YLDGG++ A  FV ++          F  DAK+ LQE A  K   T  Y 
Sbjct: 121 DLFEAVLGAIYLDGGLDEAKKFVHRFLLDDVETHSLF-YDAKSTLQELAQ-KEEKTLTYA 178

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +    GPDH+  +   V I+G   A G   S++A+EQ AA   L
Sbjct: 179 LLEEKGPDHNKSYVSEVCINGEHVATGEGASRKASEQTAAYNAL 222


>gi|183599777|ref|ZP_02961270.1| hypothetical protein PROSTU_03285 [Providencia stuartii ATCC 25827]
 gi|188022041|gb|EDU60081.1| hypothetical protein PROSTU_03285 [Providencia stuartii ATCC 25827]
          Length = 226

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 118/224 (52%), Gaps = 6/224 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+      L++++GY F    LL +ALTH S +  + E   RLEFLGD IL  +I+  L+
Sbjct: 1   MNPSLLEQLQRKLGYKFNQHDLLIQALTHRSANSKHNE---RLEFLGDSILSFVIANDLY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPKVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGIFLDSDIQTIEKIILDWYQTRLNEISPGDKQKDPKTRLQEYLQGRHLPLPNYIVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLK 221
              G  HD  FT+  ++SG+  P  G+  S+R AEQ AA + LK
Sbjct: 178 QVKGEAHDQEFTIHCQVSGIEQPINGVGSSRRKAEQAAAEQALK 221


>gi|37681015|ref|NP_935624.1| ribonuclease III [Vibrio vulnificus YJ016]
 gi|37199765|dbj|BAC95595.1| dsRNA-specific ribonuclease [Vibrio vulnificus YJ016]
          Length = 259

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 73/204 (35%), Positives = 109/204 (53%), Gaps = 6/204 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L +++GY F +  LL  ALTH S +  + E   RLEFLGD IL  +I+  L++ F    E
Sbjct: 42  LTRQLGYQFQDDELLNLALTHRSANSKHNE---RLEFLGDSILSFVIADELYHRFPKVNE 98

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G++S    +LV   T +++ RE  L  ++++     K       SI AD VE++I A+YL
Sbjct: 99  GDMSRMRATLVRGNTLAELGREFGLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAVYL 158

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D  +EV    V  ++  R  A+K G  ++D KT LQE+   +    P Y VT   G  H+
Sbjct: 159 DSDLEVVRGIVLNWYASRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEAHN 218

Query: 187 PRFTVVVEISGL-APAQGMDCSKR 209
             FTV  +I+G+  P  G   S+R
Sbjct: 219 QEFTVECDIAGMDKPVVGRGTSRR 242


>gi|325294757|ref|YP_004281271.1| ribonuclease 3 [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065205|gb|ADY73212.1| Ribonuclease 3 [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 234

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 91/232 (39%), Positives = 125/232 (53%), Gaps = 10/232 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTL 58
           M    +  LE++I Y F ++ LL+KALTH S S     +E+YE LEFLGD ++GL++S  
Sbjct: 1   MEKKSFEELERKINYFFKDKKLLKKALTHKSFSFEKDSEENYEVLEFLGDAVIGLIVSEE 60

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L   F +  EGELS     LVS  + S++A+ +DL S+I +            +SI  DV
Sbjct: 61  LIKRFPTKTEGELSQIRAFLVSEPSLSELAKTVDLGSYIYLGKGEHLSGGREKSSILCDV 120

Query: 119 VESLIAALYLDGGIEVAG-----TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP 173
            ESL  A+YLDGG E A       F+ K W+   L+     +D K+ LQE    +F V P
Sbjct: 121 FESLFGAIYLDGGFENAKEVFKRNFLMKLWE--ILEEAVTYKDFKSFLQEVTQKEFKVIP 178

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            Y V    GP+H+  FTV   +  L        SKR+AEQ AA E+LK  G+
Sbjct: 179 SYSVIKAEGPEHEKIFTVECRVKDLKTV-STGKSKRSAEQQAAKEMLKVLGV 229


>gi|251791907|ref|YP_003006627.1| ribonuclease III [Aggregatibacter aphrophilus NJ8700]
 gi|247533294|gb|ACS96540.1| ribonuclease III [Aggregatibacter aphrophilus NJ8700]
          Length = 226

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 76/216 (35%), Positives = 112/216 (51%), Gaps = 6/216 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L+++I Y F +  LL++ALTH S  H + E   RLEFLGD IL L I+  LF+ F    E
Sbjct: 9   LQRKIDYQFQDTGLLKQALTHRSAGHKHNE---RLEFLGDAILNLTIAEALFHQFPKCNE 65

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELS    +LV   T + +AR+  L  ++ +     K       SI AD VE++I A+ L
Sbjct: 66  GELSRMRATLVREPTLAILARDFQLGDYLSLGQGELKSGGFRRESILADCVEAIIGAISL 125

Query: 129 DGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D  +  A   V ++++   + ++ G  ++DAKT LQE+        P Y +    G  H+
Sbjct: 126 DSNLTNATEIVTRWYQPLLKDIQPGDNQKDAKTRLQEYLQGNRLPVPTYNIVNIQGEAHN 185

Query: 187 PRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLK 221
             FTV   I        G   S+R AEQ AA ++L+
Sbjct: 186 QLFTVECSIQNNDRTFIGKGSSRRKAEQAAAEQILQ 221


>gi|302874772|ref|YP_003843405.1| ribonuclease III [Clostridium cellulovorans 743B]
 gi|307690613|ref|ZP_07633059.1| ribonuclease III [Clostridium cellulovorans 743B]
 gi|302577629|gb|ADL51641.1| ribonuclease III [Clostridium cellulovorans 743B]
          Length = 235

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 83/221 (37%), Positives = 116/221 (52%), Gaps = 6/221 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH 62
           R   LE+++  +F N  LL  ALTHSS  +  +  +  ERLEFLGD +L L IS  LF  
Sbjct: 7   RIRILEEQLNVSFENIDLLNTALTHSSFVNQKKHIDYNERLEFLGDSVLQLTISEYLFKE 66

Query: 63  FDSAKEGELSVRFNSLVSAE-TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
                EGEL+ R  SL+  E +   V R+ ++ +F+ +S           TSI AD VE+
Sbjct: 67  LHGKSEGELT-RLRSLIVCENSLHSVGRDWNIGNFLLMSKGEELTGGRSRTSILADAVEA 125

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           +IAA+YLD G + A  F+  ++K+        K   D KT LQE       ++  YK+  
Sbjct: 126 VIAAIYLDKGYDAAREFILLHFKEVINLALDNKIVLDYKTRLQEVLQKDGEISIAYKLEK 185

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             GP H  RF V +E++      G   SK+ AEQ+AA EVL
Sbjct: 186 YDGPPHRRRFFVNLEVANKVLGSGEGFSKKEAEQMAAKEVL 226


>gi|16331055|ref|NP_441783.1| ribonuclease III [Synechocystis sp. PCC 6803]
 gi|2500554|sp|P74368|RNC1_SYNY3 RecName: Full=Ribonuclease 3 1; AltName: Full=Ribonuclease III 1;
           Short=RNase III 1
 gi|1653550|dbj|BAA18463.1| ribonuclease III [Synechocystis sp. PCC 6803]
          Length = 231

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/213 (37%), Positives = 112/213 (52%), Gaps = 12/213 (5%)

Query: 25  KALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           +ALTH S    H    SY+RLEFLGD +LG ++  +LF  +    E EL+   + LV+  
Sbjct: 17  EALTHRSYCNEHPGTPSYDRLEFLGDAVLGFVVGRILFERYPHFTEAELTRLRSQLVNQN 76

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV--- 139
             + +AR L +A  IR+S  L +D      SI ADV ESL+ A  LD G+     F+   
Sbjct: 77  QLAYLARFLHIAPEIRLSQSLARDDGQSSPSILADVFESLLGAALLDRGLTAVEDFIQEL 136

Query: 140 -----DKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
                +++ K +  +S K     D K+ LQ+WA AK    PEY++   SGP H   FT  
Sbjct: 137 FVPILEQWEKSQDGRSPKLVPTMDVKSMLQQWALAKTKQLPEYELINTSGPPHAQEFTFT 196

Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           V+++G    QG   SK+ A + AA E LK  G+
Sbjct: 197 VKVAGKIHGQGSGPSKQIATKQAALEALKSLGL 229


>gi|239948355|ref|ZP_04700108.1| GTP-binding protein Era [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239922631|gb|EER22655.1| GTP-binding protein Era [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 567

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 117/223 (52%), Gaps = 9/223 (4%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQES--YERLEFLGDRILGLLISTLLFN 61
           +  LEK + Y+F N+ LL +AL+H S+   H Y++   YERLEFLGD +L L+I+ +LF 
Sbjct: 4   FEKLEKLLSYSFKNKELLIEALSHPSLRQHHEYKDDKDYERLEFLGDAVLNLVITEILFK 63

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA--DVV 119
           +F +  EG L+   + LV  ET   V  +L L  +I ++    ++V     +     +  
Sbjct: 64  NFANYNEGNLAKIRSYLVCKETICMVGAKLALKDYIIMTHG--EEVVGGRDNPNNIENAT 121

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E+LIAA+YLD  IE     + K W++          D KT LQEWA A     P Y++  
Sbjct: 122 EALIAAIYLDSNIETTHNIIGKLWEEFIKVQNLTDYDPKTALQEWAQASDHHLPIYRLIK 181

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           R G  H   FTV+V++       G   S + AE+ AA  +L R
Sbjct: 182 REGAAHSSTFTVLVKVKDYE-QTGTGHSIKEAEKNAARSLLHR 223


>gi|302558162|ref|ZP_07310504.1| ribonuclease III [Streptomyces griseoflavus Tu4000]
 gi|302475780|gb|EFL38873.1| ribonuclease III [Streptomyces griseoflavus Tu4000]
          Length = 272

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/215 (35%), Positives = 116/215 (53%), Gaps = 6/215 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
           ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L+   
Sbjct: 16  HTLLEGRLGYRLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTH 74

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+L+    ++V++   ++V R L+L SFIR+             SI AD +E++I
Sbjct: 75  PDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTLEAVI 134

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+YLD G++ A   V + +     KS       D KT LQE    +    PEY VT  +
Sbjct: 135 GAVYLDQGLDSAAELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLVT-ET 193

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           GPDH+  FT    + G++   G   SK+ AEQ AA
Sbjct: 194 GPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 228


>gi|157960865|ref|YP_001500899.1| ribonuclease III [Shewanella pealeana ATCC 700345]
 gi|189043351|sp|A8H1C7|RNC_SHEPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|157845865|gb|ABV86364.1| Ribonuclease III [Shewanella pealeana ATCC 700345]
          Length = 225

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/215 (36%), Positives = 119/215 (55%), Gaps = 5/215 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L + +GY F  ++ L++ALTH S S+ + E   RLEFLGD IL ++IS  L++ F +A E
Sbjct: 10  LCRTLGYEFNEKAFLDQALTHRSASNKHNE---RLEFLGDSILSIVISDALYHQFPAATE 66

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    +LV  +  +++A E  L  ++++     K       SI AD VE++I A+YL
Sbjct: 67  GDLSRMRATLVCGKMLAEIAIEFKLGDYLKLGPGELKSGGFRRESILADAVEAIIGAIYL 126

Query: 129 DGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           D  IE     V  +++ R  +     ++D KT LQE+        P Y+V    G  H+ 
Sbjct: 127 DSDIENCRQLVLNWYESRLKVIEPINQKDPKTLLQEYLQKYRKPLPVYRVAHTEGDAHEQ 186

Query: 188 RFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLK 221
            FTV   +  L+ A  G+  S+R AEQ AAA+VL+
Sbjct: 187 TFTVECIVEDLSQAVVGVASSRRKAEQSAAAQVLE 221


>gi|333024194|ref|ZP_08452258.1| putative ribonuclease III [Streptomyces sp. Tu6071]
 gi|332744046|gb|EGJ74487.1| putative ribonuclease III [Streptomyces sp. Tu6071]
          Length = 314

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/216 (37%), Positives = 119/216 (55%), Gaps = 8/216 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
           ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L+   
Sbjct: 62  HTLLEGRLGYHLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTH 120

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+L+    ++V++   ++V+R LDL +FIR+             SI AD +E++I
Sbjct: 121 PDLPEGQLAKLRAAVVNSRALAEVSRGLDLGAFIRLGRGEEGTGGRDKASILADTLEAVI 180

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEW-AHAKFGVTPEYKVTFR 180
            A+YLD G++ A   V + +     KS +     D KT LQE  A    GV PEY VT  
Sbjct: 181 GAVYLDQGLDKAAELVHRLFDPLIEKSAELGAGLDWKTSLQELTAMEGLGV-PEYLVT-E 238

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            GPDH+  FT    + G++   G   SK+ AEQ AA
Sbjct: 239 EGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 274


>gi|315634822|ref|ZP_07890104.1| ribonuclease III [Aggregatibacter segnis ATCC 33393]
 gi|315476374|gb|EFU67124.1| ribonuclease III [Aggregatibacter segnis ATCC 33393]
          Length = 226

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/220 (35%), Positives = 115/220 (52%), Gaps = 6/220 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L+++I Y F + +LL++ALTH S  H++ E   RLEFLGD IL L I+  LF+ F    E
Sbjct: 9   LQRKIDYHFQDVALLKQALTHRSAGHNHNE---RLEFLGDAILNLTIAEALFHLFPKCNE 65

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELS    +LV   T + +AR+  L  ++ +     K       SI AD VE++I A+ L
Sbjct: 66  GELSRMRATLVREPTLAILARDFQLGDYLSLGQGELKSGGFRRESILADCVEAIIGAISL 125

Query: 129 DGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D  +  A   V+++++     +K G  ++DAKT LQE+        P Y V    G  H+
Sbjct: 126 DSSLTHATQIVNRWYQTLLENIKPGDNQKDAKTRLQEYLQGNRQPLPTYNVVSIQGEAHN 185

Query: 187 PRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREGI 225
             F V   IS       G   S+R AEQ AA ++L+   I
Sbjct: 186 QLFIVECSISDNDRTFIGKGSSRRKAEQAAAEQILQELNI 225


>gi|153816163|ref|ZP_01968831.1| hypothetical protein RUMTOR_02411 [Ruminococcus torques ATCC 27756]
 gi|317500483|ref|ZP_07958707.1| ribonuclease III [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089416|ref|ZP_08338315.1| ribonuclease III [Lachnospiraceae bacterium 3_1_46FAA]
 gi|145846498|gb|EDK23416.1| hypothetical protein RUMTOR_02411 [Ruminococcus torques ATCC 27756]
 gi|316898238|gb|EFV20285.1| ribonuclease III [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330404784|gb|EGG84322.1| ribonuclease III [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 228

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/205 (36%), Positives = 113/205 (55%), Gaps = 5/205 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ-ESY---ERLEFLGDRILGLLISTLLFNHFD 64
           LE++IGY F N S LE+A+ HSS ++ ++ E Y   ERLEFLGD +L L+ S  LF    
Sbjct: 8   LEQKIGYRFRNFSFLEQAMMHSSYTNEHRMEKYRCNERLEFLGDAVLELISSEFLFRQSP 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGEL+    S+V  ++ +  AR++DL S++ +          F  S+ +D +E+LI 
Sbjct: 68  KVPEGELTKTRASMVCEQSLAMCARDIDLGSYLLLGKGEEVTGGRFRDSVTSDALEALIG 127

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A+YLDGG   A  F+ ++      +  K   D+KT LQE   A+     EY +    GPD
Sbjct: 128 AIYLDGGFTNAKEFIHRFVLTDQ-EDKKLFYDSKTILQEIVQAEKLGEIEYHLIGEEGPD 186

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKR 209
           H+  F+V + I G +  +G   +K+
Sbjct: 187 HNKSFSVELTIRGRSYGKGKGRTKK 211


>gi|303251584|ref|ZP_07337758.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|302649582|gb|EFL79764.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
          Length = 223

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/223 (36%), Positives = 117/223 (52%), Gaps = 8/223 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++   L+K++ Y F N   L +ALTH S      ++ ERLEFLGD IL   I   LF  F
Sbjct: 1   MQLERLQKKLSYQFTNLDYLLQALTHRSAGA---KNNERLEFLGDSILNFAIGKALFEKF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EGELS    +LV  +T + +AR+  L  ++++ +   K       SI +D VE++I
Sbjct: 58  PKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRAL---KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           AA+YLD G++ A   V   W Q  L   K G  ++D KT LQE+   +    P Y+V   
Sbjct: 118 AAIYLDAGMDKAIAQVH-LWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVLDI 176

Query: 181 SGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKR 222
            G  H+  F V  +I  L     G+  S+R AEQ AA +VL +
Sbjct: 177 KGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAK 219


>gi|291277478|ref|YP_003517250.1| ribonuclease III [Helicobacter mustelae 12198]
 gi|290964672|emb|CBG40527.1| ribonuclease III [Helicobacter mustelae 12198]
          Length = 223

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/213 (35%), Positives = 114/213 (53%), Gaps = 8/213 (3%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            LEK I Y F N+ LL  ALTH S  +  +++ ERLE+LGD +L LLI   L+  F   K
Sbjct: 3   NLEKAINYHFKNQDLLLTALTHKSCKN--KKNNERLEYLGDAVLDLLIGEFLYQEFPEHK 60

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG+LS    +LV+ ++  + A+ + L  FI +SS+   +      SI +   E+LI A+Y
Sbjct: 61  EGDLSKMRAALVNEQSFMRFAKAIHLQDFILISSNEETNQGREKPSILSSAFEALIGAVY 120

Query: 128 LDGGIE----VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           L+ G+E    +    + K + +  + +     D KT LQE   A F   P+Y++    GP
Sbjct: 121 LEAGLERAKDITYHLLHKLYPK--IDTQSLFTDYKTALQELTQAHFHEIPKYELLEEIGP 178

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           DH  +F V V I     A+ +  SK++A+Q  A
Sbjct: 179 DHCKKFKVSVYIQNQEYAKAIGTSKKSAQQNCA 211


>gi|229825033|ref|ZP_04451102.1| hypothetical protein GCWU000182_00383 [Abiotrophia defectiva ATCC
           49176]
 gi|229790780|gb|EEP26894.1| hypothetical protein GCWU000182_00383 [Abiotrophia defectiva ATCC
           49176]
          Length = 247

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/212 (36%), Positives = 110/212 (51%), Gaps = 5/212 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +E+ IGYAF NR  L  A +HSS  +    S  +  ER+EFLGD +L L+ S  LFN   
Sbjct: 19  IEQTIGYAFKNRKFLTNAFSHSSFVNEKHLSKSDCNERMEFLGDAVLELVTSEFLFNGHK 78

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             +EGEL+     LV     +  ARE+ L+ ++ +             SI +D +E+LI 
Sbjct: 79  DMQEGELTKLRARLVCEPALAYSAREIGLSDYLLLGHGEAITGGRNRDSILSDAMEALIG 138

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A+YLDGG+  A  F++K+     ++  K   D+KT  QE   +    T  YK+    GPD
Sbjct: 139 AIYLDGGLTNAKEFIEKHV-LNDIEHKKLFFDSKTIFQEMVQSDNMGTISYKLLAEYGPD 197

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           HD +F   V I       G   +K+AAEQVAA
Sbjct: 198 HDKKFKEAVYIGEKEYGVGEGHTKKAAEQVAA 229


>gi|295696065|ref|YP_003589303.1| ribonuclease III [Bacillus tusciae DSM 2912]
 gi|295411667|gb|ADG06159.1| ribonuclease III [Bacillus tusciae DSM 2912]
          Length = 231

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/225 (36%), Positives = 115/225 (51%), Gaps = 6/225 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLL 59
           A ++  LE R+G  F N SLL +A THSS  + ++   E  ERLEFLGD +L LL+S  L
Sbjct: 2   ATKWDELEARLGITFRNASLLRQAFTHSSYRNEHRGDVEDNERLEFLGDAVLELLVSEFL 61

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F  +    EGEL+    ++V   +  + A  L L  +IR+             S+ ADV 
Sbjct: 62  FRAYPRFPEGELTRMRAAIVCEPSLVRFATALGLDQYIRLGRGEEMSGGRRRPSLLADVY 121

Query: 120 ESLIAALYLDGGIEVAGTFVDK-YWKQRALKSGKFRRDAKTELQEWAHAKFGVTP-EYKV 177
           E+LI A++LD G+E A  F+ +  +     +      D KT LQE    K G+ P  Y++
Sbjct: 122 EALIGAIFLDQGLEAAREFLQRMMFPALQREQAPILDDYKTMLQEHVQ-KVGLGPLTYRI 180

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           T   GP H   F   V I G A  +G   SK+ AEQ AA E L +
Sbjct: 181 TDERGPAHHREFVAQVWIGGQAYGEGSGRSKKEAEQHAAREALMK 225


>gi|325971140|ref|YP_004247331.1| ribonuclease 3 [Spirochaeta sp. Buddy]
 gi|324026378|gb|ADY13137.1| Ribonuclease 3 [Spirochaeta sp. Buddy]
          Length = 248

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/206 (34%), Positives = 116/206 (56%), Gaps = 9/206 (4%)

Query: 18  ANRSLLEKALTHSSISHSYQESY---ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
           +N  LL  A TH S ++   +S    ERLEFLGD +LG+ ++  LF +F +  EG+ S  
Sbjct: 32  SNLELLNLAFTHRSFANETSDSVDNNERLEFLGDSVLGMCVADWLFRNFPAKAEGDFSKI 91

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
            + +VS ++ + +AR+L +  ++ +             ++ AD +E+L AA YLD G E 
Sbjct: 92  KSVVVSEDSLAMIARQLSVDKYLLLGKGEEFTGGRDKKALLADCMEALFAACYLDSGFEA 151

Query: 135 AGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
           A +FV  Y +Q+  A+    + RD KT LQE+   ++   P Y +  ++GP+HD  F V 
Sbjct: 152 AKSFVMLYLEQQIQAVLDDDYHRDYKTSLQEYMQKRWRKVPSYTLVRKTGPEHDFTFFVE 211

Query: 193 VEISG--LAPAQGMDCSKRAAEQVAA 216
           V+++G    PA G   +K+ AEQ+AA
Sbjct: 212 VDVNGQVFGPASG--ANKKQAEQMAA 235


>gi|71274462|ref|ZP_00650750.1| Ribonuclease III [Xylella fastidiosa Dixon]
 gi|71901683|ref|ZP_00683759.1| Ribonuclease III [Xylella fastidiosa Ann-1]
 gi|170730564|ref|YP_001775997.1| ribonuclease III [Xylella fastidiosa M12]
 gi|238687923|sp|B0U3D8|RNC_XYLFM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|71164194|gb|EAO13908.1| Ribonuclease III [Xylella fastidiosa Dixon]
 gi|71728553|gb|EAO30708.1| Ribonuclease III [Xylella fastidiosa Ann-1]
 gi|167965357|gb|ACA12367.1| Ribonuclease III [Xylella fastidiosa M12]
          Length = 227

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 116/225 (51%), Gaps = 6/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M + + S  ++RIGY F + SLL +AL H S    + E   RLEFLGD ++ LLI+  LF
Sbjct: 1   MISSKASDYQQRIGYVFTDPSLLLQALRHCSAGTPHNE---RLEFLGDSVVNLLIAEALF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             +  A EG L+   + LV   + + +AR + L   + +     K       SI AD VE
Sbjct: 58  QRWPRADEGALTRARSELVRETSLASIARTMQLGEQLILGPGELKSGGHRRDSILADAVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++IAA+YLD  +    T V  +++    AL  GK  +D KT LQEW  A+    P Y++ 
Sbjct: 118 AVIAAIYLDADLATCRTVVLPWFETALTALPVGKPEKDPKTRLQEWLQARQWSLPVYELI 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222
           F SG  H   F V   +  L    +G   S+R AEQ AA+  + +
Sbjct: 178 FESGDPHTKHFRVSCTLGELKLRTEGEGSSRRLAEQDAASHAINQ 222


>gi|303252175|ref|ZP_07338343.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|302648958|gb|EFL79146.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
          Length = 223

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/223 (36%), Positives = 117/223 (52%), Gaps = 8/223 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++   L+K++ Y F N   L +ALTH S      ++ ERLEFLGD IL   I   LF  F
Sbjct: 1   MQLERLQKKLSYQFTNLDYLLQALTHRSAGA---KNNERLEFLGDSILNFAIGKALFEKF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EGELS    +LV  +T + +AR+  L  ++++ +   K       SI +D VE++I
Sbjct: 58  PKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRAL---KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           AA+YLD G++ A   V   W Q  L   K G  ++D KT LQE+   +    P Y+V   
Sbjct: 118 AAIYLDAGMDKAIEQVH-LWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVLDI 176

Query: 181 SGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKR 222
            G  H+  F V  +I  L     G+  S+R AEQ AA +VL +
Sbjct: 177 KGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAK 219


>gi|189485602|ref|YP_001956543.1| ribonuclease III [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
 gi|170287561|dbj|BAG14082.1| ribonuclease III [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
          Length = 243

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 114/219 (52%), Gaps = 7/219 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYER-LEFLGDRILGLLISTLLFNHF 63
           +   +K I Y F +  +L  ALTH S +  +  E+Y R +EFLGD IL  +++  L+  +
Sbjct: 6   WEKFQKIIEYKFGDPKILATALTHKSYAAETVGENYNRRMEFLGDSILSAIVAETLYLRY 65

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS     ++SA   S  ARE+DL   I +             S+  DV E++I
Sbjct: 66  PRESEGKLSQFKAQIISAHNLSSWAREMDLGGCIYLGKSEDTKEARQRESLLCDVFEAVI 125

Query: 124 AALYLDGGIEVAGTFVDKYWK-QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
            A+YLDGG E A  FV ++   Q+ ++      D K+ LQE   + +   PEYKV   SG
Sbjct: 126 GAIYLDGGFENAKKFVLRFLNDQKEIEI----TDYKSRLQEILQSIYKELPEYKVIKESG 181

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           PDH+ +F V V I      +G   SK+ A+Q AA + +K
Sbjct: 182 PDHNKKFEVAVYIKSELLGKGAGNSKKEAQQFAAKQAMK 220


>gi|304413540|ref|ZP_07395013.1| ribonuclease III [Candidatus Regiella insecticola LSR1]
 gi|304284383|gb|EFL92776.1| ribonuclease III [Candidatus Regiella insecticola LSR1]
          Length = 235

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/211 (33%), Positives = 114/211 (54%), Gaps = 7/211 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M  +    LE R+GYAF  R+LL +ALTH S S ++ E   RLEFLGD IL   I+  L+
Sbjct: 1   MDPIIIKKLETRLGYAFKQRALLVQALTHRSASRTHNE---RLEFLGDAILNFFIAKALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG++S    +LV  +T +++A E DL+ ++ +     K+  S   SI AD VE
Sbjct: 58  QRFSDINEGDMSRMRATLVRGKTLAEIAHEFDLSDYLYLGKGELKNGKSPRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  ++++R   +  G+ ++D KT LQE+  +     P Y VT
Sbjct: 118 ALIGGIFLDSDIQTTERLLLTWYEKRLAEISPGEKQKDPKTRLQEYLQSHHLPLPSYLVT 177

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
              G  H+ +F  ++    + P +  + +K+
Sbjct: 178 QVHGEAHEQKF--IIHCKFIIPCRENNLTKQ 206


>gi|309389054|gb|ADO76934.1| RNAse III [Halanaerobium praevalens DSM 2228]
          Length = 237

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/220 (35%), Positives = 111/220 (50%), Gaps = 6/220 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            EK +   F N+ LLE+ALTH S      H   +  ERLEFLGD +L L IST +FN F 
Sbjct: 13  FEKSLDLNFNNKFLLERALTHKSYPNENRHLNLKDNERLEFLGDSVLSLSISTYIFNKFS 72

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+L+     +VSA   ++ A+ ++L  ++ +             SI AD +E++  
Sbjct: 73  DFPEGDLAKMRAVIVSAPILAEAAKRINLGQYLFLGKGEEMTGGRERDSILADTMEAIFG 132

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           ALYLD   +V   F+ +  K   +   +G   +D KT LQE         PEY+V    G
Sbjct: 133 ALYLDQSFKVVSDFILELLKVDIINVAAGNHIQDYKTMLQEVIQDMGNFRPEYEVIDEEG 192

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           PDH+  F V V+++  +   G   SK+ AEQ AA   L +
Sbjct: 193 PDHNKTFIVAVKMNEESLGSGQGSSKKEAEQEAAKVALDK 232


>gi|227500106|ref|ZP_03930177.1| ribonuclease III [Anaerococcus tetradius ATCC 35098]
 gi|227217821|gb|EEI83118.1| ribonuclease III [Anaerococcus tetradius ATCC 35098]
          Length = 239

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 121/220 (55%), Gaps = 6/220 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65
            E++IGY+F ++ L++ A THSS ++  +   +S ERLEFLGD IL +++S +LF ++  
Sbjct: 14  FEEKIGYSFNDKELIDVAFTHSSYTNEVKGKKKSNERLEFLGDSILDMIVSEILFKNYSQ 73

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG L+   + LV   + ++   +  ++S++   +  ++        ++AD  E++ AA
Sbjct: 74  KPEGWLTKTRSRLVCTSSFAKACEKFQMSSYLNFGNGEKQGGGELKKHVKADTFEAVCAA 133

Query: 126 LYLDGGIEVAGTFVDKYWKQRAL---KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +YLD   E    F+   +K  AL          D KT+LQE+ +AK     +Y++T   G
Sbjct: 134 IYLDSSYENLFNFLVTNYKAEALHVINDDSIFNDYKTKLQEYHNAKDKKILKYELTKEEG 193

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           P+H   FT+ V++     A G+  +K+ AEQ+AA    ++
Sbjct: 194 PEHSKTFTMAVKLGNKILAYGVGKNKKQAEQMAAKAAFEK 233


>gi|212636523|ref|YP_002313048.1| ribonuclease III [Shewanella piezotolerans WP3]
 gi|226735379|sp|B8CQJ5|RNC_SHEPW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|212558007|gb|ACJ30461.1| Ribonuclease III [Shewanella piezotolerans WP3]
          Length = 225

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/215 (37%), Positives = 117/215 (54%), Gaps = 5/215 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L + +GY FA ++LL++ALTH S S+ + E   RLEFLGD IL ++IS  L++ F  A E
Sbjct: 10  LCRTLGYEFAEQALLDQALTHRSASNKHNE---RLEFLGDSILSIVISDALYHQFPKATE 66

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    +LV  +  +++A E  L  ++++     K       SI AD VE++I A+YL
Sbjct: 67  GDLSRMRATLVCGKMLAEIAIEFKLGDYLKLGPGELKSGGFRRESILADAVEAIIGAIYL 126

Query: 129 DGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           D  IE     V  ++  R  +     ++D KT LQE         P YKV    G  H+ 
Sbjct: 127 DSDIEKCRKLVLNWYASRLRVIEPINQKDPKTLLQEHLQKFRKPLPIYKVVHTEGDAHEQ 186

Query: 188 RFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLK 221
            FTV   +  L  A  G+  S+R AEQ AAA+VL+
Sbjct: 187 TFTVECVVEDLRQAVVGVASSRRKAEQSAAAQVLE 221


>gi|294815350|ref|ZP_06773993.1| Ribonuclease 3 [Streptomyces clavuligerus ATCC 27064]
 gi|326443704|ref|ZP_08218438.1| ribonuclease III [Streptomyces clavuligerus ATCC 27064]
 gi|294327949|gb|EFG09592.1| Ribonuclease 3 [Streptomyces clavuligerus ATCC 27064]
          Length = 303

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 119/219 (54%), Gaps = 6/219 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           +A  ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L
Sbjct: 19  AASSHTLLEGRLGYRLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 77

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +       EG+L+    ++V++   ++V R L+L +FIR+             SI AD +
Sbjct: 78  YRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGAFIRLGRGEEGTGGRDKASILADTL 137

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD G++ A   V + +     KS       D KT LQE   ++    PEY V
Sbjct: 138 EAVIGAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTASEGLGVPEYLV 197

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           T  +GPDH+  FT    + G++   G   SK+ AEQ AA
Sbjct: 198 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 235


>gi|254392460|ref|ZP_05007640.1| ribonuclease 3 [Streptomyces clavuligerus ATCC 27064]
 gi|197706127|gb|EDY51939.1| ribonuclease 3 [Streptomyces clavuligerus ATCC 27064]
          Length = 300

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 119/219 (54%), Gaps = 6/219 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           +A  ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L
Sbjct: 16  AASSHTLLEGRLGYRLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 74

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +       EG+L+    ++V++   ++V R L+L +FIR+             SI AD +
Sbjct: 75  YRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGAFIRLGRGEEGTGGRDKASILADTL 134

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD G++ A   V + +     KS       D KT LQE   ++    PEY V
Sbjct: 135 EAVIGAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTASEGLGVPEYLV 194

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           T  +GPDH+  FT    + G++   G   SK+ AEQ AA
Sbjct: 195 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 232


>gi|139436972|ref|ZP_01771132.1| Hypothetical protein COLAER_00105 [Collinsella aerofaciens ATCC
           25986]
 gi|133776619|gb|EBA40439.1| Hypothetical protein COLAER_00105 [Collinsella aerofaciens ATCC
           25986]
          Length = 241

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/226 (37%), Positives = 115/226 (50%), Gaps = 3/226 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
           R +  ++ +G+ F N+ LL  ALTH S         SYERLEFLGD ILG +++  LF  
Sbjct: 6   RLTRAQEILGHEFNNKVLLRAALTHPSAVEGQPVSASYERLEFLGDSILGAVVARSLFES 65

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +    EG+L+    SLVS  T S+V+ EL +   I   +         + S   +V ESL
Sbjct: 66  YPEFDEGKLTRLKVSLVSGATLSEVSHELGIDDIIIFGASETGTGARGLHSALENVYESL 125

Query: 123 IAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + ALYLD G +VA  F+ +  K   A +  +   + K+ LQE   A     P YK+    
Sbjct: 126 VGALYLDAGWDVAAEFIHRTLKPHLASERAEHPANPKSFLQECVQADGHEPPAYKLVGSE 185

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           GP H P FT VV I G+   +G   SK+ AE  AA E L R G  T
Sbjct: 186 GPAHAPTFTAVVLIDGIRQGRGTGSSKKEAEGAAALEALDRMGYTT 231


>gi|220904300|ref|YP_002479612.1| ribonuclease III [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
 gi|219868599|gb|ACL48934.1| Ribonuclease III [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
          Length = 243

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/217 (36%), Positives = 116/217 (53%), Gaps = 12/217 (5%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++K++G+ F  + LLE ALTHSS ++     QE  ER EFLGD +L L +S  L+  F S
Sbjct: 19  VKKQLGHGFIRKDLLELALTHSSWANECGPGQEHNERQEFLGDAVLELCVSWELYRRFPS 78

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A+EGEL+   +SLVSA + ++ AR++ L   +++             ++ +D +E+++AA
Sbjct: 79  AREGELTKMRSSLVSAVSLAERARDMGLDRLLKLGRGEESQGGRKRDAVLSDALEAVLAA 138

Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +Y DGG     E  G      W  RA   GK  +D KT LQE +  +FG  P Y      
Sbjct: 139 IYEDGGFAAAQEAVGRIFADQWPSRA-GDGKASKDYKTRLQEASQQRFGQAPLYTRVGSH 197

Query: 182 GPDHDPRFTVVVEISGLA--PAQGMDCSKRAAEQVAA 216
           GP+H   F V + +   +   A G  C K  AEQ AA
Sbjct: 198 GPEHSKVFEVALRLPDGSEFSASGSSCKK--AEQQAA 232


>gi|326316027|ref|YP_004233699.1| ribonuclease 3 [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323372863|gb|ADX45132.1| Ribonuclease 3 [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 228

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/216 (35%), Positives = 112/216 (51%), Gaps = 6/216 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M +   S L+ R+ +AF++ SLL++A+TH S S  + E   RLEFLGD +L L +S+LL+
Sbjct: 1   MVSPSLSALQDRLQHAFSDPSLLQRAITHRSFSADHNE---RLEFLGDSVLSLAVSSLLY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                  EG+LS    +LV  E    +A  L L   +R+     K       SI AD +E
Sbjct: 58  QRLRDLPEGDLSRVRANLVRQEALHDLALGLQLPQVLRLGEGETKSGGKQRPSILADALE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI A+YLD G + A   V + +K   +  +     +DAKT LQEW   +    P+Y+V 
Sbjct: 118 ALIGAVYLDAGYQCAEALVHRLYKDVEINPRMQAAEKDAKTALQEWLQGRKMKLPQYRVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQ 213
              G  H   F V  +I  L   + G+  S+RA EQ
Sbjct: 178 ATVGAAHRQTFDVECDIPELGLTERGIGGSRRAGEQ 213


>gi|325108661|ref|YP_004269729.1| RNAse III [Planctomyces brasiliensis DSM 5305]
 gi|324968929|gb|ADY59707.1| RNAse III [Planctomyces brasiliensis DSM 5305]
          Length = 335

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/216 (35%), Positives = 121/216 (56%), Gaps = 9/216 (4%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           E+ +GY F +++ L K+LTH+SI+ +  +S ER+EFLGD +LG ++   LF  F   +EG
Sbjct: 19  EQALGYQFQDKNWLLKSLTHASIAQTRLQSNERMEFLGDAVLGAVVCDRLFALFPEDEEG 78

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           +++   + +VS   C+Q+A  L L  F+++   L +       S+ A V ES+IAA+YLD
Sbjct: 79  QMTQMKSEVVSRTACAQLALALGLDRFVQMGKGLHQSR-EIPLSVLAGVFESVIAAIYLD 137

Query: 130 GGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           GG + A  F+    +   Q A ++    R++K++LQ+        TP Y++   SGPDH 
Sbjct: 138 GGYKAAFDFISGKLEDLIQHAAETAHI-RNSKSQLQQLTQRTRSQTPTYELLQESGPDHS 196

Query: 187 PRFTV--VVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             F V  +V      PA G   +K+ AEQ AA   L
Sbjct: 197 KCFLVQAIVGPDTYPPAWG--SNKKEAEQKAALNAL 230


>gi|325265084|ref|ZP_08131811.1| ribonuclease III [Clostridium sp. D5]
 gi|324029774|gb|EGB91062.1| ribonuclease III [Clostridium sp. D5]
          Length = 232

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/212 (37%), Positives = 114/212 (53%), Gaps = 5/212 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISH-SYQESY---ERLEFLGDRILGLLISTLLFNHFD 64
           LEK+IGY F + SLL +A+ HSS ++  + E Y   ERLEFLGD +L L+ S  LF    
Sbjct: 11  LEKKIGYKFRDFSLLRRAMMHSSFTNEKHLEKYHCNERLEFLGDAVLELVSSEYLFLESP 70

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGEL+    S+V   + +  AR++DL S++ +             SI +D +E+LI 
Sbjct: 71  KVSEGELTKTRASMVCEPSLAFCARDIDLGSYLLLGRGEEATGGRARDSITSDALEALIG 130

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A+YLDGG   A  F+ ++     L+  K   D+KT LQE   A+   +  Y++    GPD
Sbjct: 131 AIYLDGGFTNAKEFIHRFI-LTDLEDKKLFFDSKTILQEIVQARMAGSISYRLIKEEGPD 189

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           H+  F V V I       G   +K+AAEQ AA
Sbjct: 190 HNKAFFVEVMIEENGYGIGKGRTKKAAEQEAA 221


>gi|32129971|sp|Q9PB98|RNC_XYLFA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
          Length = 227

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 116/225 (51%), Gaps = 6/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M + + S  ++RIGY F + SLL +AL H S    + E   RLEFLGD ++ LLI+  LF
Sbjct: 1   MISSKASDYQQRIGYVFTDPSLLLQALRHCSAGTPHNE---RLEFLGDSVVNLLIAEALF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             +  A EG L+   + LV   + + +AR + L   + +     K       SI AD VE
Sbjct: 58  QRWPRADEGALTRARSELVRETSLASIARTMQLGEQLILGPGELKSGGHRRDSILADAVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++IAA+YLD  +    T V  +++    AL  GK  +D KT LQEW  A+    P Y++ 
Sbjct: 118 AVIAAIYLDADLATCRTVVLPWFETALTALPVGKPEKDPKTRLQEWLQARQWSLPVYELI 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222
           F SG  H   F V   +  L    +G   S+R AEQ AA+  + +
Sbjct: 178 FESGDPHTKHFRVSCTLGELKLRTEGEGSSRRLAEQDAASHAIDQ 222


>gi|189425004|ref|YP_001952181.1| ribonuclease III [Geobacter lovleyi SZ]
 gi|189421263|gb|ACD95661.1| Ribonuclease III [Geobacter lovleyi SZ]
          Length = 228

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/217 (35%), Positives = 118/217 (54%), Gaps = 7/217 (3%)

Query: 13  IGYAFANRSLLEKALTHSS-ISHSYQES---YERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +G++F N+ LL++ALTH S ++ + QE    Y+RLEFLGD +LG L++ LL  HF +  E
Sbjct: 9   LGHSFINQRLLQQALTHPSYLNEARQEGAADYQRLEFLGDAVLGFLLADLLCQHFPALPE 68

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS   +SLV     +++A +  +   I +     ++      SI ADV E+L+ A++ 
Sbjct: 69  GDLSRLRSSLVDQPRLARLAVDAGIPPLILMGKGAEREGGRTNPSILADVFEALLGAIHC 128

Query: 129 DGGIEVAGTFVDKYWKQ--RALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           D G       V   +     A+ +G     DAK+ELQE   A+    P Y +  + GPDH
Sbjct: 129 DAGFAAVQQVVKHIYAPLVNAIAAGTPAHHDAKSELQELLAARKQAAPVYNLVDQQGPDH 188

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           D  F + V + G+   QG   SK+AA+Q AA   L R
Sbjct: 189 DRLFCIEVSVDGMPLGQGQGRSKKAAQQSAAESALAR 225


>gi|325577735|ref|ZP_08148010.1| ribonuclease III [Haemophilus parainfluenzae ATCC 33392]
 gi|325160480|gb|EGC72606.1| ribonuclease III [Haemophilus parainfluenzae ATCC 33392]
          Length = 227

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 115/221 (52%), Gaps = 13/221 (5%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE++IGY F++   L+ ALTH S S  + E   RLEFLGD IL  +I+  L++ F    E
Sbjct: 7   LERKIGYQFSDLKNLKLALTHRSASTQHNE---RLEFLGDSILNYVIADALYHQFPRCNE 63

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELS    +LV   T + +AR  +L  ++ + S   K       SI AD VE++I A+ L
Sbjct: 64  GELSRMRATLVREPTLAMLARNFELGDYMSLGSGELKSGGFRRESILADCVEAVIGAMAL 123

Query: 129 DGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D   + A   V  ++K     +K G  ++DAKT LQE+   K    P Y+V    G  H 
Sbjct: 124 DSSFDKAADIVRSWYKTLLAEIKPGDNQKDAKTRLQEYLQGKHFALPTYEVIKIEGEAHC 183

Query: 187 PRFTVVVEISGLAP------AQGMDCSKRAAEQVAAAEVLK 221
             FTV   +  +        A+G   S+R AEQ AA ++LK
Sbjct: 184 QTFTVECTVKNVPNIDRTFIAKG--SSRRKAEQAAAEQILK 222


>gi|238753924|ref|ZP_04615284.1| Ribonuclease 3 [Yersinia ruckeri ATCC 29473]
 gi|238707912|gb|EEQ00270.1| Ribonuclease 3 [Yersinia ruckeri ATCC 29473]
          Length = 226

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/225 (36%), Positives = 122/225 (54%), Gaps = 6/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F  + LL +ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVITRLQRKLGYTFQQQELLLQALTHRSASSKHNE---RLEFLGDSILSFVIANELY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD GI+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSGIQTVERLILDWYRSRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222
              G  HD  FT+  ++SGL  P  G   S+R AEQ AA + LK+
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLGEPVVGTGSSRRKAEQAAAEQALKQ 222


>gi|301154741|emb|CBW14204.1| RNase III [Haemophilus parainfluenzae T3T1]
          Length = 227

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 115/221 (52%), Gaps = 13/221 (5%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE++IGY F++   L+ ALTH S S  + E   RLEFLGD IL  +I+  L++ F    E
Sbjct: 7   LERKIGYQFSDLKNLKLALTHRSASTQHNE---RLEFLGDSILNYVIADALYHQFPRCNE 63

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELS    +LV   T + +AR  +L  ++ + S   K       SI AD VE++I A+ L
Sbjct: 64  GELSRMRATLVREPTLAIIARNFELGDYMSLGSGELKSGGFRRESILADCVEAVIGAMAL 123

Query: 129 DGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D   + A   V  ++K     +K G  ++DAKT LQE+   K    P Y+V    G  H 
Sbjct: 124 DSSFDKAADIVRSWYKTLLAEIKPGDNQKDAKTRLQEYLQGKHFALPTYEVIKIEGEAHC 183

Query: 187 PRFTVVVEISGLAP------AQGMDCSKRAAEQVAAAEVLK 221
             FTV   +  +        A+G   S+R AEQ AA ++LK
Sbjct: 184 QTFTVECTVKNVPNIDRTFIAKG--SSRRKAEQAAAEQILK 222


>gi|213419257|ref|ZP_03352323.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
          Length = 213

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/197 (34%), Positives = 106/197 (53%), Gaps = 5/197 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 20  MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 76

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 77  HRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTVE 136

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  ++K R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 137 ALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 196

Query: 179 FRSGPDHDPRFTVVVEI 195
              G  HD  FT+  ++
Sbjct: 197 QVRGEAHDQEFTIHCQV 213


>gi|28199176|ref|NP_779490.1| ribonuclease III [Xylella fastidiosa Temecula1]
 gi|182681907|ref|YP_001830067.1| ribonuclease III [Xylella fastidiosa M23]
 gi|32129967|sp|Q87C06|RNC_XYLFT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|238691044|sp|B2I604|RNC_XYLF2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|28057282|gb|AAO29139.1| ribonuclease III [Xylella fastidiosa Temecula1]
 gi|182632017|gb|ACB92793.1| Ribonuclease III [Xylella fastidiosa M23]
 gi|307578162|gb|ADN62131.1| ribonuclease III [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 227

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 116/225 (51%), Gaps = 6/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M + + S  ++RIGY F + SLL +AL H S    + E   RLEFLGD ++ LLI+  LF
Sbjct: 1   MISSKASDYQQRIGYVFTDPSLLLQALRHRSAGTPHNE---RLEFLGDSVVNLLIAEALF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             +  A EG L+   + LV   + + +AR + L   + +     K       SI AD VE
Sbjct: 58  QRWPRADEGALTRARSELVRETSLASIARTMQLGEQLILGPGELKSGGHRRDSILADAVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++IAA+YLD  +    T V  +++    AL  GK  +D KT LQEW  A+    P Y++ 
Sbjct: 118 AVIAAIYLDADLATCRTVVLPWFETALTALPVGKPEKDPKTRLQEWLQARQWSLPVYELI 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222
           F SG  H   F V   +  L    +G   S+R AEQ AA+  + +
Sbjct: 178 FESGDPHTKHFRVSCTLGELKLRTEGEGSSRRLAEQDAASHAIDQ 222


>gi|126667175|ref|ZP_01738149.1| ribonuclease III [Marinobacter sp. ELB17]
 gi|126628331|gb|EAZ98954.1| ribonuclease III [Marinobacter sp. ELB17]
          Length = 229

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/220 (35%), Positives = 115/220 (52%), Gaps = 6/220 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L++RIGY F ++  L  ALTH S  +   ++ ERLEFLGD I+ ++I+  LF  F  A+E
Sbjct: 10  LQRRIGYQFKSQERLLLALTHRSFGN---QNNERLEFLGDSIVNMVIAEHLFRRFPKARE 66

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS     +V   T +++ RE DL S++R+ S   K       SI AD VES+I A+YL
Sbjct: 67  GQLSRLRARMVKGVTLAEIGREFDLGSYLRLGSGELKSGGFRRESILADAVESVIGAIYL 126

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D         + +++  R   L     ++D KT LQE+  ++    P Y V    G  H+
Sbjct: 127 DSDFVTCQAQILRWFDLRLQNLDLQDTQKDPKTRLQEYLQSRQFPLPIYDVLSVDGEAHN 186

Query: 187 PRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKREGI 225
             F +   +S L     G   S+R AEQ AA   LK  G+
Sbjct: 187 QTFHISCALSSLGRKTTGSGNSRRIAEQQAARNALKELGV 226


>gi|239991059|ref|ZP_04711723.1| ribonuclease III [Streptomyces roseosporus NRRL 11379]
 gi|291448061|ref|ZP_06587451.1| ribonuclease III [Streptomyces roseosporus NRRL 15998]
 gi|291351008|gb|EFE77912.1| ribonuclease III [Streptomyces roseosporus NRRL 15998]
          Length = 274

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 118/219 (53%), Gaps = 6/219 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           +A  ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L
Sbjct: 16  TASSHTLLEGRLGYHLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 74

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +       EG+L+    ++V++   ++V R L+L SFIR+             SI AD +
Sbjct: 75  YRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTL 134

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD G+  A   V + +     +S       D KT LQE   ++    PEY V
Sbjct: 135 EAVIGAVYLDQGLSAASELVHRLFDPLIDRSSNLGAGLDWKTSLQELTASESLGVPEYLV 194

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           T  +GPDH+  FT    + G++   G   SK+ AEQ AA
Sbjct: 195 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 232


>gi|182435701|ref|YP_001823420.1| ribonuclease III [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|178464217|dbj|BAG18737.1| putative ribonuclease III [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 274

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 118/219 (53%), Gaps = 6/219 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           +A  ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L
Sbjct: 16  TASSHTLLEGRLGYHLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 74

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +       EG+L+    ++V++   ++V R L+L SFIR+             SI AD +
Sbjct: 75  YRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTL 134

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD G+  A   V + +     +S       D KT LQE   ++    PEY V
Sbjct: 135 EAVIGAVYLDQGLSAASELVHRLFDPLIDRSSNLGAGLDWKTSLQELTASESLGVPEYLV 194

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           T  +GPDH+  FT    + G++   G   SK+ AEQ AA
Sbjct: 195 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 232


>gi|326776326|ref|ZP_08235591.1| ribonuclease III [Streptomyces cf. griseus XylebKG-1]
 gi|326656659|gb|EGE41505.1| ribonuclease III [Streptomyces cf. griseus XylebKG-1]
          Length = 274

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 118/219 (53%), Gaps = 6/219 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           +A  ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L
Sbjct: 16  TASSHTLLEGRLGYHLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 74

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +       EG+L+    ++V++   ++V R L+L SFIR+             SI AD +
Sbjct: 75  YRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTL 134

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD G+  A   V + +     +S       D KT LQE   ++    PEY V
Sbjct: 135 EAVIGAVYLDQGLSAASELVHRLFDPLIDRSSNLGAGLDWKTSLQELTASESLGVPEYLV 194

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           T  +GPDH+  FT    + G++   G   SK+ AEQ AA
Sbjct: 195 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 232


>gi|90021888|ref|YP_527715.1| RNAse III [Saccharophagus degradans 2-40]
 gi|89951488|gb|ABD81503.1| RNAse III [Saccharophagus degradans 2-40]
          Length = 226

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/215 (36%), Positives = 118/215 (54%), Gaps = 10/215 (4%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71
           R+GY F ++SLL+ AL+H S     +++ ER+EFLGD +L  +I+  LF  F +AKEG+L
Sbjct: 10  RLGYTFKDKSLLKLALSHRSYG---KQNNERVEFLGDSLLNFIIAEALFAKFPTAKEGQL 66

Query: 72  SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131
           +    +LV  ET +++ARE  L  F+ +     K       SI AD VE+LI A+YLD  
Sbjct: 67  TQLRANLVKGETLAEIAREFGLGDFLLLGEGELKSGGFRRASILADAVEALIGAIYLDSN 126

Query: 132 IEVAGTFVDKY--WKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
             +  T  ++   W    L   + +   +DAKT LQE+   +    P Y V    G  H 
Sbjct: 127 SSMP-TCRERVLAWYATRLDKVELKATAKDAKTLLQEYLQERKMPLPTYTVLAEGGEAHS 185

Query: 187 PRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVL 220
            +FTV   I+G + P   +  SKR AE++AA ++L
Sbjct: 186 RQFTVECTITGKSKPCSAVGNSKRIAEKLAAEKML 220


>gi|291533418|emb|CBL06531.1| RNAse III [Megamonas hypermegale ART12/1]
          Length = 240

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/220 (37%), Positives = 119/220 (54%), Gaps = 8/220 (3%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTLLFNHFDSAKE 68
           R+G  F + +LL +ALTH+S ++  ++     ERLEFLGD +L L  ST LF  F    E
Sbjct: 17  RLGVKFNDLNLLNQALTHTSYANEAKDHSLHNERLEFLGDAVLELASSTYLFKTFTQMPE 76

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GE++    S+V   + +++A  L++  ++ +    R        SI AD  ES+I A+YL
Sbjct: 77  GEMTKARASVVCETSLAKLAMNLNVGQYLLLGKGERLTGGEHRPSILADAFESIIGAIYL 136

Query: 129 DGGIEVAGTFV-DKYWKQ-RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D G + A  +V DK  ++  A+K G   +D KT LQE   AK G   EYK+   +GPDH 
Sbjct: 137 DQGWQTAYEYVLDKLNEEFIAVKYGYNLKDYKTILQEVVQAK-GQHVEYKLLAETGPDHA 195

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
             F   V +      +G   +K+ AEQ AA E LK+  IW
Sbjct: 196 KTFEFAVVVDKKIDGKGKGTTKKEAEQHAAYEALKK--IW 233


>gi|239944597|ref|ZP_04696534.1| ribonuclease III [Streptomyces roseosporus NRRL 15998]
          Length = 271

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 118/219 (53%), Gaps = 6/219 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           +A  ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L
Sbjct: 13  TASSHTLLEGRLGYHLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 71

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +       EG+L+    ++V++   ++V R L+L SFIR+             SI AD +
Sbjct: 72  YRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTL 131

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD G+  A   V + +     +S       D KT LQE   ++    PEY V
Sbjct: 132 EAVIGAVYLDQGLSAASELVHRLFDPLIDRSSNLGAGLDWKTSLQELTASESLGVPEYLV 191

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           T  +GPDH+  FT    + G++   G   SK+ AEQ AA
Sbjct: 192 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 229


>gi|313683639|ref|YP_004061377.1| RNAase iii [Sulfuricurvum kujiense DSM 16994]
 gi|313156499|gb|ADR35177.1| RNAse III [Sulfuricurvum kujiense DSM 16994]
          Length = 226

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/201 (35%), Positives = 108/201 (53%), Gaps = 10/201 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L++R+GY F N+ LL +ALTH S    Y    ERLEFLGD +L L++   L+  F    E
Sbjct: 7   LQERLGYTFQNKELLIEALTHKSYKQPYNN--ERLEFLGDAVLDLIVGEYLYKKFRGYDE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    SLV+    + +A  L+L   I +S+    +     +S+ ++  E+++ A+YL
Sbjct: 65  GKLSKMRASLVNEGGFTSLANHLNLGEHIFLSNAEENNSGRTKSSLLSNAFEAVMGAMYL 124

Query: 129 DGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           + G+    E+  + ++      +L S    +D KT LQE   A +G TPEY++    GPD
Sbjct: 125 ETGLGKVQEITVSLLEHVHPDISLDS--LFKDYKTSLQELTQAHYGTTPEYQLIAAHGPD 182

Query: 185 HDPRFTVVVEISG--LAPAQG 203
           H   F V V I G   A AQG
Sbjct: 183 HKKEFEVAVIIDGKRYASAQG 203


>gi|254360744|ref|ZP_04976892.1| ribonuclease III [Mannheimia haemolytica PHL213]
 gi|153091314|gb|EDN73288.1| ribonuclease III [Mannheimia haemolytica PHL213]
          Length = 224

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/220 (34%), Positives = 118/220 (53%), Gaps = 6/220 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++   L+K++GY F N   L +ALTH S +    ++ ERLEFLGD IL   I  +L++ F
Sbjct: 1   MQLERLQKKLGYQFHNLDYLIQALTHRSAA---TKNNERLEFLGDSILNFTIGKVLYDKF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EGELS    +LV  +T + +AR+ DL  ++++     K       SI +D VE++I
Sbjct: 58  PKANEGELSRMRATLVREQTLAIIARKFDLGDYLKLGPGELKSGGFRRESILSDCVEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+YLD  +  A   V+ ++    + +  G  ++D KT LQE+   +    PEY V    
Sbjct: 118 AAIYLDQDMAKAMEKVEDWYSDLLKDISPGDSQKDPKTRLQEFLQGRKLPLPEYDVLDIK 177

Query: 182 GPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVL 220
           G  H+  F V  ++  +     G+  S+R AEQ AA + L
Sbjct: 178 GEAHNQTFRVTCKVINVEEVFIGIGTSRRKAEQNAAEKAL 217


>gi|227484649|ref|ZP_03914965.1| ribonuclease III [Anaerococcus lactolyticus ATCC 51172]
 gi|227237369|gb|EEI87384.1| ribonuclease III [Anaerococcus lactolyticus ATCC 51172]
          Length = 237

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 118/224 (52%), Gaps = 9/224 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65
            EK IGY F +++L++ A THSS ++  +   +S ERLEFLGD IL +++S  LF ++  
Sbjct: 14  FEKSIGYTFNDKTLIDVAFTHSSFTNEARIKTKSNERLEFLGDTILDMVVSEYLFKNYKE 73

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG L+   + +V  ++ ++   + DL  ++R     +K        ++AD  E+  AA
Sbjct: 74  KPEGWLTRTRSRIVCTDSFAKACEKFDLTKYLRFGMGEKKQGGKLKKHVKADTFEAFCAA 133

Query: 126 LYLDGGIEVAGTFVDKYWKQRALK---SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +YLD   +    F+   + +  L+         D KT LQE+ +A       Y++    G
Sbjct: 134 IYLDSSYQRLFEFLKSNYSEEVLQIINDDSLFLDYKTRLQEYYNAHSKKNLSYELIKEVG 193

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA---EVLKRE 223
           P+HD  FT+ V +   A AQG   +K+ AEQ+AA    E++K +
Sbjct: 194 PEHDKTFTMEVRLGNRALAQGEGKNKKTAEQMAAKAAYEIIKND 237


>gi|160947505|ref|ZP_02094672.1| hypothetical protein PEPMIC_01439 [Parvimonas micra ATCC 33270]
 gi|158446639|gb|EDP23634.1| hypothetical protein PEPMIC_01439 [Parvimonas micra ATCC 33270]
          Length = 237

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 110/222 (49%), Gaps = 14/222 (6%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           +GY F +  LL  A  H S  +  ++   S ERLEFLGD ILG ++S  L+  F ++ EG
Sbjct: 17  LGYKFKDLELLNLAFVHRSYLNECKDATISNERLEFLGDVILGFIVSVELYEQFPNSDEG 76

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF----MTSIQADVVESLIAA 125
            L+   + +V  E+ S  AR  +L  ++     L K   SF      SI AD  E+L  A
Sbjct: 77  YLTKIRSKVVCEESFSYAARTFNLGKYLL----LGKGEDSFGGRNRNSILADTFEALFGA 132

Query: 126 LYLDGGIEVAGTFVDKYWKQRA---LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           LYLDGG++V     +KY+       +    F +D K+ LQE+ H        Y +    G
Sbjct: 133 LYLDGGMDVVTEIANKYFFDTVVYKIDKNIFIKDYKSYLQEYFHKNATTKISYTLVAERG 192

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           PDHD  F + V I  +    G   +K+ AEQ AA + L + G
Sbjct: 193 PDHDKEFDMCVNIDDVVKGYGTGKNKKQAEQQAARDALIKSG 234


>gi|320547232|ref|ZP_08041525.1| ribonuclease III [Streptococcus equinus ATCC 9812]
 gi|320448120|gb|EFW88870.1| ribonuclease III [Streptococcus equinus ATCC 9812]
          Length = 228

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/226 (34%), Positives = 118/226 (52%), Gaps = 8/226 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M AL  + L++  G  F + +LL+ A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MQALD-TKLQRDFGITFKDTTLLDTAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  +    EG+LS   + +V  E+ +  +R      FI++ +   K       +I  
Sbjct: 60  QYLFKKYPKKPEGDLSKMRSVIVREESLAGFSRYCGFDDFIKLGNGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D+ E+ + AL +D G+E    F+++    +  K G F R  D KT LQE       VT +
Sbjct: 120 DLFEAFLGALLMDQGVEAVNKFLNQVMIPQVEK-GNFERVKDYKTTLQELLQGHGDVTID 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           Y+V+  SGP H   F V V ++  A +QG+  SK+ AEQ AA   L
Sbjct: 179 YRVSNESGPAHAKVFEVTVYVNDEAKSQGIGKSKKLAEQDAAKNAL 224


>gi|227112907|ref|ZP_03826563.1| ribonuclease III [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
 gi|253689440|ref|YP_003018630.1| ribonuclease III [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|259491904|sp|C6DC00|RNC_PECCP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|251756018|gb|ACT14094.1| ribonuclease III [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 226

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 120/225 (53%), Gaps = 6/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F    LL +ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 1   MNPILINRLQRKLGYTFQQYELLLQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPKVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGIFLDSDIQTIERLILNWYQTRLDEISPGDKQKDPKTRLQEFLQGRHLPLPTYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKR 222
              G  HD  FT+  ++SG + +  G   S+R AEQ AA + LK+
Sbjct: 178 QVRGEAHDQEFTIHCQVSGFSESVIGTGSSRRKAEQAAAEQALKK 222


>gi|227328581|ref|ZP_03832605.1| ribonuclease III [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 226

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 120/225 (53%), Gaps = 6/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F    LL +ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 1   MNPILINRLQRKLGYTFQQYDLLLQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPKVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGIFLDSDIQTIERLILNWYQTRLDEISPGDKQKDPKTRLQEFLQGRHLPLPTYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKR 222
              G  HD  FT+  ++SG + +  G   S+R AEQ AA + LK+
Sbjct: 178 QVRGEAHDQEFTIHCQVSGFSESVIGTGSSRRKAEQAAAEQALKK 222


>gi|269123548|ref|YP_003306125.1| ribonuclease III [Streptobacillus moniliformis DSM 12112]
 gi|268314874|gb|ACZ01248.1| ribonuclease III [Streptobacillus moniliformis DSM 12112]
          Length = 233

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 117/228 (51%), Gaps = 6/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  +    L  +I Y F N+ LL +ALTHSS  + +     +  ERLEFLGD ++ L+ +
Sbjct: 1   MKKMDLEKLMSKINYTFKNKKLLLEALTHSSYVNEHNFPNIKDNERLEFLGDSVMDLITT 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             ++ +   + EGELS   + ++S    S ++R+L+L ++I +S+           S+  
Sbjct: 61  EYIYKNNLKSNEGELSKIKSQIISETVFSTISRDLNLGNYIFLSNGENMSGGRERNSVLG 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPE 174
           DV E+++ A+YLD         V K  + +     K     D K+ LQE    K+ VTP 
Sbjct: 121 DVFEAMVGAIYLDSDYATTRDVVLKLLESKINNLDKIEWVSDYKSALQEITQLKYKVTPI 180

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           Y V    GPDHD  F + V +      +G+  SK+ AE++AA + +++
Sbjct: 181 YTVLSEIGPDHDKTFEIEVRVEERLYGKGVAKSKKMAEKIAAKQAIEK 228


>gi|329936742|ref|ZP_08286449.1| ribonuclease III [Streptomyces griseoaurantiacus M045]
 gi|329303972|gb|EGG47855.1| ribonuclease III [Streptomyces griseoaurantiacus M045]
          Length = 273

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/219 (34%), Positives = 117/219 (53%), Gaps = 6/219 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           +A  ++ LE R+GY     +LL +ALTH S ++      + ERLEFLGD +LGL+++  L
Sbjct: 23  AASSHTLLEGRLGYRLET-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 81

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +       EG+L+    ++V++   ++V R L+L SF+R+             SI AD +
Sbjct: 82  YRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFVRLGRGEEGTGGRDKASILADTL 141

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD G++ A   V + +     KS       D KT LQE    +    PEY V
Sbjct: 142 EAVIGAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLV 201

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           +  +GPDH+  FT    + G++   G   SK+ AEQ AA
Sbjct: 202 S-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 239


>gi|325915827|ref|ZP_08178126.1| RNAse III [Xanthomonas vesicatoria ATCC 35937]
 gi|325537948|gb|EGD09645.1| RNAse III [Xanthomonas vesicatoria ATCC 35937]
          Length = 226

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/211 (37%), Positives = 110/211 (52%), Gaps = 6/211 (2%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           IG+AFA+  LL +AL H S    + E   RLEFLGD I+ LLI+  L+  +  A EG L+
Sbjct: 12  IGHAFADPGLLARALRHRSAGTPHNE---RLEFLGDGIVNLLIAEALYQRWPKADEGALT 68

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                LV     + + R L+L   + +     K       SI AD VE+++AA+YLD G 
Sbjct: 69  RARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDCGF 128

Query: 133 EVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           E     V  +++    AL  GK  +D KT LQEW  A+    P Y +   SG +H  +F 
Sbjct: 129 ERCRAVVLPWFEPSLAALPVGKAEKDPKTRLQEWLQARQLPLPNYALISESGDEHAKQFH 188

Query: 191 VVVEI-SGLAPAQGMDCSKRAAEQVAAAEVL 220
           V   +   +A A+G   S+R AEQ AAA V+
Sbjct: 189 VACILEQPIARAEGQGTSRRLAEQQAAATVI 219


>gi|77919004|ref|YP_356819.1| RNase III [Pelobacter carbinolicus DSM 2380]
 gi|90101632|sp|Q3A4Q8|RNC_PELCD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|77545087|gb|ABA88649.1| RNAse III [Pelobacter carbinolicus DSM 2380]
          Length = 232

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 116/222 (52%), Gaps = 12/222 (5%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           LE  I Y F N++LL +ALTH S S+   +      ERLEFLGD +LG+++S  +F  F 
Sbjct: 10  LEDTIDYVFDNQALLLEALTHKSFSNEQNDRTEPDNERLEFLGDAVLGVVVSHYIFRTFP 69

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGEL+   + +VS +  + + + + L  ++R+     +      +S+ A+ +E+L+ 
Sbjct: 70  HLPEGELTRIRSEVVSEKGLTVIGKAICLGDYMRLGKGEERSGGRQKSSLLANTMEALLG 129

Query: 125 ALYLDGGIE-----VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           A++ DGG +     +   F+    +    K+G    D KT LQE   A+FG  P+Y +  
Sbjct: 130 AVFCDGGFDSVRRVIEALFIPHIQRAARRKTGV---DYKTRLQERLQARFGDVPQYVLIH 186

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             GP H   ++V     G    QG   SK++AEQ AA + L+
Sbjct: 187 ADGPPHQRSYSVEAHFRGSCIGQGQGRSKKSAEQAAAKQALE 228


>gi|320008314|gb|ADW03164.1| ribonuclease III [Streptomyces flavogriseus ATCC 33331]
          Length = 274

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 118/219 (53%), Gaps = 6/219 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           +A  ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L
Sbjct: 16  TASSHTLLEGRLGYHLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 74

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +       EG+L+    ++V++   ++V R L+L SFIR+             SI AD +
Sbjct: 75  YRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTL 134

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD G+  A   V + +     +S       D KT LQE   ++    PEY V
Sbjct: 135 EAVIGAVYLDQGLGAASELVHRLFDPLIDRSSNLGAGLDWKTSLQELTASESLGVPEYLV 194

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           T  +GPDH+  FT    + G++   G   SK+ AEQ AA
Sbjct: 195 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 232


>gi|154173754|ref|YP_001409228.1| ribonuclease III [Campylobacter curvus 525.92]
 gi|189043298|sp|A7H186|RNC_CAMC5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|112803490|gb|EAU00834.1| ribonuclease III [Campylobacter curvus 525.92]
          Length = 223

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 118/219 (53%), Gaps = 8/219 (3%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            L+K +GY F N  LL +ALTH S    Y  S ERLEFLGD ++ L++   LF  F    
Sbjct: 6   NLQKLLGYEFENTKLLNEALTHKSTKLPY--SNERLEFLGDAVMDLIVGEYLFKKFSKTN 63

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG++S    +LV+ ++ + +AR L +  FI +S+    +      S+ +D  E+++ A+Y
Sbjct: 64  EGDMSKLRAALVNEKSFANMARHLQIGEFIHLSTAEANNGGREKASLLSDAFEAVMGAVY 123

Query: 128 LDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           L+ G+    E+A   ++  + +  +      +D KT LQE   A  G TP Y++    GP
Sbjct: 124 LEAGLDKVREIAVRLLEICYPK--IDFSHLVKDYKTALQEITQASLGTTPIYELVRSFGP 181

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           DH   F + + ++    ++ +  SK+ A+Q+AA   L++
Sbjct: 182 DHKKEFEIALLLNDKEISRAIANSKKEAQQMAAKIALEK 220


>gi|160880576|ref|YP_001559544.1| ribonuclease III [Clostridium phytofermentans ISDg]
 gi|160429242|gb|ABX42805.1| Ribonuclease III [Clostridium phytofermentans ISDg]
          Length = 235

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/211 (36%), Positives = 114/211 (54%), Gaps = 5/211 (2%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           E++I YAF    LL +ALTHSS ++    S   + ERLEFLGD +L L  S  LF     
Sbjct: 14  EQKIDYAFTEPGLLRQALTHSSFANEKRLSKLANNERLEFLGDAVLELTTSEWLFEKHPK 73

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+L+    S+V  +T +  AREL L +++ +             SI +D +ES+I A
Sbjct: 74  MPEGDLTKLRASMVCEQTLALCARELHLGNYVFLGKGEDTTGGRDRDSILSDALESIIGA 133

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           +YLDGG   A  F+  Y     ++  K   D+KT LQE   +++     Y++   +GPDH
Sbjct: 134 IYLDGGFANAKEFISNYILSD-IEHKKLFYDSKTILQEIVQSEYKKHLSYELLQETGPDH 192

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           + +FTVV ++   +   G   +K+AAEQ AA
Sbjct: 193 NKKFTVVAKMDEESLEIGTGRTKKAAEQEAA 223


>gi|291563451|emb|CBL42267.1| RNAse III [butyrate-producing bacterium SS3/4]
          Length = 226

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/216 (34%), Positives = 116/216 (53%), Gaps = 5/216 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           +   L++ IGY F +  LL  ALTHSS ++          ERLEFLGD +L ++ S  LF
Sbjct: 4   KLEKLQEMIGYQFKDPGLLTHALTHSSYANEKHWDKTRCNERLEFLGDAVLEVISSDFLF 63

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + ++S  EGE++    SLV   T +  A  + L  ++ +             S+ +D +E
Sbjct: 64  HTYESMPEGEMTKLRASLVCEPTLAYCADVIPLGDYLLLGKGEDLTGGRKRPSVVSDAME 123

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           ++I A+YLDGG+  A  F+ ++     ++  +   D+KT LQE   AK+  T  Y++   
Sbjct: 124 AVIGAIYLDGGLANAKEFIHRFI-LNDIEHKQLFYDSKTILQEMVQAKYKETLVYELLKE 182

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            GPDH+  F V V+I      +G+  +K+AAEQVAA
Sbjct: 183 EGPDHNKSFEVCVKIGDEEIGRGLGRTKKAAEQVAA 218


>gi|261855986|ref|YP_003263269.1| ribonuclease III [Halothiobacillus neapolitanus c2]
 gi|261836455|gb|ACX96222.1| ribonuclease III [Halothiobacillus neapolitanus c2]
          Length = 243

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/227 (37%), Positives = 117/227 (51%), Gaps = 14/227 (6%)

Query: 1   MSALRYST--------LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILG 52
           MSAL+ S+        L + IG  FA+  LLE AL H S  +    + ERLEFLGD +L 
Sbjct: 1   MSALKPSSPFVTAPEKLAQHIGITFASPELLEMALRHRSAGNM---NNERLEFLGDAVLN 57

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
           L+I+  L+     A EGELS    SLV  E+ + +ARELDL S++ +     K       
Sbjct: 58  LVIANQLYTMHSKATEGELSRWRASLVREESLAVIARELDLGSYLVLGPGELKSGGFRRD 117

Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFG 170
           SI AD +E+ I A+YLD G +VA + + + +++  + L      +D KT LQEW      
Sbjct: 118 SILADALEATIGAVYLDQGFDVAQSLLVRLFERMLQDLPDAASLKDPKTRLQEWLQGSKR 177

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAA 216
             P Y+VT   G  H   F V   +S     A G   S+R AEQ AA
Sbjct: 178 ELPSYEVTTIRGQAHKQVFEVTCTLSDTQQTAVGRGSSRRKAEQAAA 224


>gi|150021479|ref|YP_001306833.1| ribonuclease III [Thermosipho melanesiensis BI429]
 gi|149794000|gb|ABR31448.1| Ribonuclease III [Thermosipho melanesiensis BI429]
          Length = 231

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/231 (34%), Positives = 126/231 (54%), Gaps = 13/231 (5%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLL 59
           M   R   +E  IGY F N+ LL  ALTH+S ++ + ++SYERLEFLGD ++ +L+ T+L
Sbjct: 1   MERFREGEIEHVIGYRFRNKELLFTALTHTSYANENKKQSYERLEFLGDSVIDILVCTIL 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  + +  EG ++   +++ S +   ++A++ +L  +I +    R+   S   SI ADVV
Sbjct: 61  YEQYQTLNEGTMAQIKSAVTSEDILFEIAKKFNLGKYILLGKGERRSRGSEKKSILADVV 120

Query: 120 ESLIAALYLDG--GIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
           ESLIAA+YLD    +++      K +K       +GK   D KT+LQE    KF   P Y
Sbjct: 121 ESLIAAIYLDSNKNLKLIENLFSKIFKDYIDIFLTGKRIFDYKTKLQELTQDKFKQLPVY 180

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA---EVLKRE 223
           + T   G     +F   ++I+    ++    SK+ AE++AA    E LK E
Sbjct: 181 ETTTVGG-----KFITTLKINNKIYSKAKGSSKKDAEKLAAKIAYEKLKEE 226


>gi|157737847|ref|YP_001490531.1| ribonuclease III [Arcobacter butzleri RM4018]
 gi|315637636|ref|ZP_07892842.1| ribonuclease III [Arcobacter butzleri JV22]
 gi|189043289|sp|A8EV88|RNC_ARCB4 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|157699701|gb|ABV67861.1| ribonuclease III [Arcobacter butzleri RM4018]
 gi|315478090|gb|EFU68817.1| ribonuclease III [Arcobacter butzleri JV22]
          Length = 224

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/206 (33%), Positives = 107/206 (51%), Gaps = 4/206 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           YS LEK + Y F N++L+ +ALTH S    Y    ERLEFLGD +L L++   L+  F  
Sbjct: 4   YSKLEKCLDYQFKNKNLIIEALTHKSFKKPYNN--ERLEFLGDAVLNLIVGEYLYLKFPK 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           + EGELS    SLV+    +++A E+ L  +I +S+   ++      SI +D  E+++ A
Sbjct: 62  SNEGELSKIRASLVNETGFTRLANEIKLGEYIFISTAEERNKGRTKASILSDAFEAIMGA 121

Query: 126 LYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YL+ G+      + +  ++    +       D KT LQE   A+F   PEYK+    GP
Sbjct: 122 IYLESGLNTLKPIILRILEESYDKINLDVLFSDYKTALQEITQARFASIPEYKIEGSYGP 181

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKR 209
           DH   F V + I G    +    SK+
Sbjct: 182 DHKKEFEVSIWIDGKNYGKASGKSKK 207


>gi|46445908|ref|YP_007273.1| putative ribonuclease III [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|81627660|sp|Q6MEK1|RNC_PARUW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|46399549|emb|CAF22998.1| putative Ribonuclease III [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 242

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/220 (35%), Positives = 115/220 (52%), Gaps = 4/220 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHF 63
             +E ++GY F +  LL  A  H S  +  +E     ERLEFLGD +LG+LIS  L+   
Sbjct: 19  PAIEAKLGYTFKDPQLLVLAFVHRSFINENREVNQHNERLEFLGDSVLGMLISDYLYCKL 78

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS   + LV A +C    + LDL+ ++ +    R +      SI AD+ E++I
Sbjct: 79  PKTPEGQLSYLRSRLVEASSCVHYIQSLDLSGYLLLGKGERMNDGRGRESILADLFEAII 138

Query: 124 AALYLDGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
            A+YLDGG++ A  F+ K + Q   +      R+ K  LQ++    +  TP Y+V   SG
Sbjct: 139 GAIYLDGGLQAAKDFLFKNFHQHIEIILATPLRNWKALLQDYCQKNYQQTPLYQVLHESG 198

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           PDH   F + V I      +G   SK+ A+Q AAA+ L R
Sbjct: 199 PDHSKVFQISVWIQDRELGRGKGTSKKEAQQAAAADALSR 238


>gi|195952887|ref|YP_002121177.1| Ribonuclease III [Hydrogenobaculum sp. Y04AAS1]
 gi|226741373|sp|B4U7T8|RNC_HYDS0 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|195932499|gb|ACG57199.1| Ribonuclease III [Hydrogenobaculum sp. Y04AAS1]
          Length = 232

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 118/221 (53%), Gaps = 7/221 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           +  LE++IGY F +++L++KA TH S S S  E+YE LEFLGD ++  +   +L   F +
Sbjct: 4   FELLEEKIGYRFKDKNLVKKAFTHISFSKS-SENYEVLEFLGDALVNFMTVNILVEAFPN 62

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
            KEGELS   + L+S E  + +A+ L+   +I +S        +   SI  DV E+  AA
Sbjct: 63  KKEGELSQLKSFLISEEFLASLAKSLNFEKYILISKGEELKGSNKNPSILCDVFEAFWAA 122

Query: 126 LYLDGGIE--VAGTFVDKYWKQRALK---SGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +Y+D G +  +  +  + ++K + L+   S   ++D KT LQE    K+   P Y V   
Sbjct: 123 IYIDSGYDCKLTKSLFEHHFKSQILEMVNSNSLKQDYKTALQEITQKKWKERPIYNVISV 182

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            GP+H   FTV      L    G   SK+ AEQ AA  +L+
Sbjct: 183 EGPEHRKTFTVECLFKDLRTT-GKGNSKKYAEQEAAKNMLQ 222


>gi|118444155|ref|YP_878292.1| ribonuclease III [Clostridium novyi NT]
 gi|118134611|gb|ABK61655.1| ribonuclease III [Clostridium novyi NT]
          Length = 237

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/220 (35%), Positives = 118/220 (53%), Gaps = 6/220 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64
           + +E ++   F + ++L+ ALTHSS  +  +   S ERLEFLGD IL L IS LL+N ++
Sbjct: 10  NEVENKLKVKFNDINILDTALTHSSFINENKNINSNERLEFLGDSILQLCISELLYNKYN 69

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG L+ +   +V   +  +VA++ ++  +I +S            SI +D VE++IA
Sbjct: 70  DEPEGFLTKKRALIVCGNSLHEVAKKWNIGKYINMSKGEEMTGGRTRISILSDCVEAIIA 129

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFG-VTPEYKVTFRS 181
           ++YLD G EVA  F+ + + +   K  S +   D KT+LQE    KFG    EY +    
Sbjct: 130 SIYLDQGYEVAKNFIIENFNEIIQKAHSNEIILDYKTKLQETIQ-KFGEYNIEYTLVSFE 188

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           GP H  +F   V I  L    G   SK+ +EQ AA E LK
Sbjct: 189 GPPHRRKFVTEVSIDSLVKGVGEGYSKKESEQNAAKEALK 228


>gi|210612575|ref|ZP_03289366.1| hypothetical protein CLONEX_01568 [Clostridium nexile DSM 1787]
 gi|210151500|gb|EEA82507.1| hypothetical protein CLONEX_01568 [Clostridium nexile DSM 1787]
          Length = 231

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/212 (37%), Positives = 110/212 (51%), Gaps = 5/212 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
           L++RIGY F  + LL+ AL HSS ++       +  ERLEFLGD +L L+ S  LF    
Sbjct: 8   LQERIGYTFRRQELLKSALMHSSYTNETHLPKYKCNERLEFLGDAVLELVSSEFLFFADR 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGEL+    S+V   + +  ARE++L  ++ +             SI +D +E+LI 
Sbjct: 68  KMPEGELTKTRASMVCEPSLAFCAREIELGKYLFMGRGEENTGGRERDSITSDALEALIG 127

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A+YLDGG   A  F+ K+     L+  K   D+KT LQE   A F     Y +    GPD
Sbjct: 128 AIYLDGGFANAKEFILKFV-LNDLEHKKLFYDSKTILQEIVQAHFPYGVLYHLIKEEGPD 186

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           H+  FTV V I      +G   +K+AAEQ AA
Sbjct: 187 HNKSFTVAVHIGEECYGEGTGRTKKAAEQEAA 218


>gi|78044311|ref|YP_360276.1| ribonuclease III [Carboxydothermus hydrogenoformans Z-2901]
 gi|90101616|sp|Q3AC58|RNC_CARHZ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|77996426|gb|ABB15325.1| ribonuclease III [Carboxydothermus hydrogenoformans Z-2901]
          Length = 235

 Score =  115 bits (288), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 118/225 (52%), Gaps = 9/225 (4%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHF 63
           +LEK +G+ F N S+L  A+TH S +  + E      ERLEFLGD +L L IS  LF  F
Sbjct: 8   SLEKILGFNFNNPSILLSAITHPSYAFEHPEEGIEHNERLEFLGDAVLELFISDYLFRTF 67

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+L+   + LV AE+  ++A +++L  F+R+     K   +   S  A+ VE++I
Sbjct: 68  PQKSEGDLTKLRSRLVCAESLYELAFKINLDKFLRLGKGEFKAGGNQRMSNLANAVEAVI 127

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+Y D GIE A +F+ + + ++       +  +D KT LQE    +      Y++    
Sbjct: 128 GAVYFDCGIEAAFSFITRLYGEKLKPENLEQLPKDEKTTLQELLQKEKNNVLRYEILLEE 187

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA---EVLKRE 223
           GP H   FT  V I+    A G   SK+ AEQ AA    E+LK E
Sbjct: 188 GPPHQKIFTAGVIINDKLIATGRGKSKKEAEQEAAKKALELLKNE 232


>gi|160938006|ref|ZP_02085363.1| hypothetical protein CLOBOL_02899 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439000|gb|EDP16755.1| hypothetical protein CLOBOL_02899 [Clostridium bolteae ATCC
           BAA-613]
          Length = 234

 Score =  115 bits (288), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 69/212 (32%), Positives = 116/212 (54%), Gaps = 5/212 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESY----ERLEFLGDRILGLLISTLLFNHFD 64
           LE+RI Y F N++L  +ALTHSS ++ ++  +    ERLEFLGD +L ++ S  L+  ++
Sbjct: 8   LEERIAYEFKNKNLFTQALTHSSYANEHRLDHSRCNERLEFLGDAVLEIVTSEFLYRKYE 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EG+L+    S+V   T +  A +++L  ++ +             S+ +D +E+LI 
Sbjct: 68  TLPEGDLTKIRASIVCEPTLAYCAGDIELGQYLYLGKGEDATGGRNRNSVVSDAMEALIG 127

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A+YLDGG   A  F+ ++     ++  +   D+KT LQE   ++      Y++    GPD
Sbjct: 128 AIYLDGGFANAKEFIHRFILND-IEHKQLFYDSKTILQEMVQSRQEAPLSYEIIREEGPD 186

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           H+  F V  +I      +G   +K+AAEQVAA
Sbjct: 187 HNKSFEVCAKIGDEEVGRGAGRTKKAAEQVAA 218


>gi|149374709|ref|ZP_01892483.1| ribonuclease III [Marinobacter algicola DG893]
 gi|149361412|gb|EDM49862.1| ribonuclease III [Marinobacter algicola DG893]
          Length = 229

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 78/220 (35%), Positives = 114/220 (51%), Gaps = 6/220 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L++RIGY F     L  ALTH S  +   ++ ERLEFLGD I+ ++I+  L+ HF+ A+E
Sbjct: 10  LQRRIGYQFKTPERLLLALTHRSFGN---QNNERLEFLGDSIVNMVIAEYLYLHFEKARE 66

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS     +V   T +++ RE +L  ++R+ S   K       SI AD VES+I A+YL
Sbjct: 67  GQLSRLRARMVKGVTLAEIGREFELGKYLRLGSGEMKSGGFRRESILADAVESIIGAIYL 126

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D         V ++++ R   L     ++D KT LQE+  ++    P Y V    G  H 
Sbjct: 127 DSDFHTCREQVLRWFEVRLQKLDLQDTQKDPKTRLQEYLQSRQFPLPRYDVISVDGEAHA 186

Query: 187 PRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225
             F V   +  L     G   S+R AEQ AA   LK+ G+
Sbjct: 187 QTFHVSCALPSLDRKTTGTGNSRRIAEQQAARNALKQLGV 226


>gi|218132444|ref|ZP_03461248.1| hypothetical protein BACPEC_00303 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992554|gb|EEC58556.1| hypothetical protein BACPEC_00303 [Bacteroides pectinophilus ATCC
           43243]
          Length = 234

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 79/220 (35%), Positives = 116/220 (52%), Gaps = 6/220 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62
           + L++ +GY+F + SLL+ ALTHSS ++  +     + ERLEFLGD +L L+ S  LFN 
Sbjct: 14  NELQQAMGYSFDDVSLLKHALTHSSYANELRINKTGNNERLEFLGDAVLELVSSEYLFNE 73

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
                EG LS    S+V   + +  AR++ L  +I +             SI +D +E++
Sbjct: 74  HKDVNEGSLSKLRASMVCEPSLAFCARDISLQKYIMLGKGEDATGGRQRDSITSDALEAV 133

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           I A+YLDGG E A  F+  +     L + K   D+KT LQE   A    TPEY++T   G
Sbjct: 134 IGAIYLDGGFEPAKKFIMAHVLND-LDNKKLFYDSKTILQEILQAD-NKTPEYRITGEEG 191

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           P+H   F+  V         G   +K+AAEQ AA + + R
Sbjct: 192 PEHSKTFSAEVLDGSTVLGHGSGHNKKAAEQQAAYDAILR 231


>gi|300854469|ref|YP_003779453.1| dsRNA-specific ribonuclease [Clostridium ljungdahlii DSM 13528]
 gi|300434584|gb|ADK14351.1| dsRNA-specific ribonuclease [Clostridium ljungdahlii DSM 13528]
          Length = 235

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 121/219 (55%), Gaps = 6/219 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LEK+   +F+N+ ++E ALTHSS ++  +  +  ERLEFLGD +L L IS  LF  + S 
Sbjct: 10  LEKKFNMSFSNKEIIEVALTHSSYANGRKNIKFNERLEFLGDSVLQLCISEYLFLKYKSK 69

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGEL+ + + +V   +   VA++ +L  +I++S           TSI AD VE++IAA+
Sbjct: 70  PEGELTKKRSLIVCENSLYHVAKKWNLGKYIKMSKGEEITGGRERTSILADCVEAIIAAI 129

Query: 127 YLDGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           YL+ G E  G F+ + ++   + A+K+ +   D KT+LQE       V+ EY +    GP
Sbjct: 130 YLNFGYENTGKFIIENFQDIIENAIKN-RIIMDYKTKLQETLQKDGDVSIEYNLVKYEGP 188

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            H  +F   V         G+  SK+ +EQ AA + L +
Sbjct: 189 PHRRKFYTEVCTEKNVLGSGVGYSKKESEQNAAQDALMK 227


>gi|288941442|ref|YP_003443682.1| ribonuclease III [Allochromatium vinosum DSM 180]
 gi|288896814|gb|ADC62650.1| ribonuclease III [Allochromatium vinosum DSM 180]
          Length = 225

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 78/217 (35%), Positives = 115/217 (52%), Gaps = 6/217 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L + +G+ F    LL +ALTH S+  S   + ERLEFLGD ++G +I+  L+  F  A E
Sbjct: 8   LAQALGHRFTREELLIQALTHRSVGSS---NNERLEFLGDALIGFVIAEALWERFPKADE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G LS    SLV  E+ +++AR+L L   +R+ +   +       SI AD +E+++ A+YL
Sbjct: 65  GTLSRMRASLVKRESLARLARDLKLGDSLRLGAGELRTGGHARDSILADALEAVLGAVYL 124

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D G E   T V + +  R  ++   R  +D KT LQEW  +     PEY V    G  HD
Sbjct: 125 DAGFERTRTVVLELFAARLEQTDAERAGKDPKTRLQEWLQSYKRPLPEYLVLSIDGDQHD 184

Query: 187 PRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222
             F V  ++       +G   S+R AEQ AA  +L+R
Sbjct: 185 QTFIVSCQLQDADVTTRGTGTSRRRAEQAAAESMLER 221


>gi|260881779|ref|ZP_05893556.1| ribonuclease III [Mitsuokella multacida DSM 20544]
 gi|260847870|gb|EEX67877.1| ribonuclease III [Mitsuokella multacida DSM 20544]
          Length = 247

 Score =  115 bits (287), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 76/219 (34%), Positives = 116/219 (52%), Gaps = 5/219 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTLLFNHFDS 65
           L +R+G  F + +LL++ALTH+S ++  + +    ERLEFLGD +L L  ST L+ HF  
Sbjct: 20  LSERLGVTFHDIALLDQALTHTSYANESKRNTAHNERLEFLGDAVLELASSTYLYEHFPE 79

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGEL+    S+V + T +++A  L L  ++ +             +   DV E++I A
Sbjct: 80  MPEGELTKTRASIVCSTTLAKLATGLHLGDYLLLGRGEEMGGGRTRQTNLEDVFEAVIGA 139

Query: 126 LYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YLD G E A  +V +  +      + G   +D KT LQE    K G +  Y++   SGP
Sbjct: 140 VYLDQGWEAAQAYVVRQLRGEFENAEHGAILKDYKTILQEIVFRKEGQSIAYELVSESGP 199

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           DH   FT  V ++G    +G   SK+ AEQ AA   L++
Sbjct: 200 DHAKEFTFRVRVTGKVMGEGTGHSKKEAEQHAARRALEK 238


>gi|71892313|ref|YP_278047.1| RNase III [Candidatus Blochmannia pennsylvanicus str. BPEN]
 gi|90101614|sp|Q492D1|RNC_BLOPB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|71796419|gb|AAZ41170.1| RNase III [Candidatus Blochmannia pennsylvanicus str. BPEN]
          Length = 229

 Score =  115 bits (287), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 117/221 (52%), Gaps = 9/221 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L++++GY F    LL +ALTH S S+ + E   RLEFLGD IL  +I+ LL++ F   
Sbjct: 4   NALQEKLGYIFNRYDLLLQALTHRSSSNQHNE---RLEFLGDAILNYVIANLLYHRFPHI 60

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG +S    +LV   T + +ARE +L  ++++     K       SI A+ +E+LI  +
Sbjct: 61  SEGGMSRMRANLVRENTLATLAREFNLGDYLQLGQGELKSGGYQRESILANTIEALIGGI 120

Query: 127 YLDGGIEVAGTFVDKYWKQR-----ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +LD  I+     +  ++K R        S   ++D KT LQE+   +    P Y +    
Sbjct: 121 FLDSNIQTIEILIINWYKIRIDHMDPYASYDTQKDPKTRLQEYMQRRRLPLPVYWINQII 180

Query: 182 GPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221
           G  H+  FT+  ++S L  P  G   S+R AEQ AAA+VL+
Sbjct: 181 GEAHNQIFTINCQVSELTQPIIGCGSSRRRAEQNAAAKVLE 221


>gi|21230730|ref|NP_636647.1| ribonuclease III [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66769274|ref|YP_244036.1| ribonuclease III [Xanthomonas campestris pv. campestris str. 8004]
 gi|188992425|ref|YP_001904435.1| ribonuclease III [Xanthomonas campestris pv. campestris str. B100]
 gi|24212269|sp|Q8PB52|RNC_XANCP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|81304767|sp|Q4USF7|RNC_XANC8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|21112323|gb|AAM40571.1| ribonuclease III [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66574606|gb|AAY50016.1| ribonuclease III [Xanthomonas campestris pv. campestris str. 8004]
 gi|167734185|emb|CAP52393.1| Ribonuclease III [Xanthomonas campestris pv. campestris]
          Length = 226

 Score =  115 bits (287), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 79/211 (37%), Positives = 110/211 (52%), Gaps = 6/211 (2%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           IG+AFA+  LL +AL H S    + E   RLEFLGD I+ LLI+  L+  +  A EG L+
Sbjct: 12  IGHAFADPGLLAQALRHRSAGTPHNE---RLEFLGDGIVNLLIAEALYQRWPKADEGALT 68

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                LV     + + R L+L   + +     K       SI AD VE+++AA+YLD G 
Sbjct: 69  RARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDCGF 128

Query: 133 EVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           E     V  +++    AL  GK  +D KT LQEW  A+    P+Y +   SG +H  +F 
Sbjct: 129 ERCRAVVLPWFEPSLAALPVGKAEKDPKTRLQEWLQARQLPLPQYALISESGDEHAKQFH 188

Query: 191 VVVEISGLAP-AQGMDCSKRAAEQVAAAEVL 220
           V   +   A  A+G   S+R AEQ AAA V+
Sbjct: 189 VACILEQPAARAEGQGTSRRLAEQQAAATVI 219


>gi|254481213|ref|ZP_05094458.1| ribonuclease III [marine gamma proteobacterium HTCC2148]
 gi|214038376|gb|EEB79038.1| ribonuclease III [marine gamma proteobacterium HTCC2148]
          Length = 232

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 74/208 (35%), Positives = 116/208 (55%), Gaps = 6/208 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L++ +GY FA++SLL+ ALTH S+      + ERLEFLGD I+  +I+  L+  F  A+E
Sbjct: 11  LQRALGYQFADKSLLQLALTHRSVG---GRNNERLEFLGDSIVNHIIAEALYRQFPDARE 67

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G++S    SLV  +T ++VARELDL   + +    RK       SI AD +E++  A+ +
Sbjct: 68  GDMSRMRASLVKGDTLAEVARELDLGEHLLLGPGERKSGGKRRGSILADGLEAVAGAILI 127

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D  +    + V  ++++R   L      +DAKT LQE+   +    PEY++    G DH+
Sbjct: 128 DSDVAACRSCVLTWFRERLDLLSLDGADKDAKTLLQEYLQGRRSPLPEYELLGVVGEDHE 187

Query: 187 PRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213
            +F V   I+  +   +G   S+R AEQ
Sbjct: 188 QQFHVACRIAKPVLVVEGDGSSRRKAEQ 215


>gi|253581846|ref|ZP_04859070.1| ribonuclease III [Fusobacterium varium ATCC 27725]
 gi|251836195|gb|EES64732.1| ribonuclease III [Fusobacterium varium ATCC 27725]
          Length = 235

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 7/229 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLF 60
            Y  LE  +GY+F N+ LL+ +L H S  + +    + S ERLE LGD +L L+++  L+
Sbjct: 4   NYLELEGNLGYSFNNKELLKNSLIHRSFGNEHWRYKKISNERLELLGDAVLDLVVTEYLY 63

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
              +S+ EG+L+   + +VS    + +++++D+  ++ +S           +SI  D  E
Sbjct: 64  KSHESSTEGDLAKIKSMVVSEPVLASISKKMDVGKYLLLSKGEEMTGGRERSSILGDAFE 123

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178
           +++ A+YLD   E A  +   + K       K     D KT LQE++  ++ + P Y+V 
Sbjct: 124 AILGAIYLDSDFETAKKYALSHIKDSIDHVDKNEDILDFKTILQEYSQREYKIIPSYEVI 183

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
             +GPDH   F + V I G    +G   +K++AEQ AA E+ K+ G+ T
Sbjct: 184 RETGPDHQKVFEIEVRI-GERTGRGTGKNKKSAEQSAAKELCKKLGVKT 231


>gi|241763850|ref|ZP_04761895.1| Ribonuclease III [Acidovorax delafieldii 2AN]
 gi|241366894|gb|EER61308.1| Ribonuclease III [Acidovorax delafieldii 2AN]
          Length = 227

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 78/211 (36%), Positives = 111/211 (52%), Gaps = 8/211 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S L+ R+ + F+N SLL++A+TH S S  + E   RLEFLGD +L L +++LL+      
Sbjct: 6   SALQDRLQHHFSNASLLQRAITHRSFSADHNE---RLEFLGDSVLNLAVASLLYQRLSDL 62

Query: 67  KEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
            EG+LS VR N LV  +T  Q+A  L ++  +R+     K       SI AD +E+LI A
Sbjct: 63  PEGDLSRVRAN-LVKQDTLHQLALRLQVSDVLRLGEGESKSGGQNRPSILADALEALIGA 121

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YLD G   A   V + ++   +        +D KT LQEW   +    P Y V    G 
Sbjct: 122 VYLDAGYSRAEALVHRLFQGVEINPQMQAAAKDPKTALQEWLQGRKMKLPHYSVVATVGA 181

Query: 184 DHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQ 213
            H   F V  EI+ L  A+ G+  S+RA EQ
Sbjct: 182 AHRQTFDVECEIAELGLAERGIGGSRRAGEQ 212


>gi|94263438|ref|ZP_01287251.1| Ribonuclease III [delta proteobacterium MLMS-1]
 gi|93456168|gb|EAT06307.1| Ribonuclease III [delta proteobacterium MLMS-1]
          Length = 233

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 76/201 (37%), Positives = 103/201 (51%), Gaps = 4/201 (1%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           +GY F   SLLE AL HSS +    +   S ERLEFLGD +LGL ++ LL+    +  EG
Sbjct: 15  MGYRFKRTSLLELALVHSSRAAEAGKGVSSNERLEFLGDAVLGLAVAALLYEAHPTMPEG 74

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           +LS    +LV+ E  + +AR+L L  FIR+             SI A   E+L+ A+YLD
Sbjct: 75  DLSRHRAALVNEEHLAGMARQLALGEFIRLGRGEEATGGRDKPSILAATFEALVGAVYLD 134

Query: 130 GGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           GG E A   +   +          R  D+K+ LQE    + G  P Y +    GPDHD R
Sbjct: 135 GGYEPALALLRPLFAPWVANPPLPRISDSKSALQEVLQQRHGEGPVYYLENEEGPDHDKR 194

Query: 189 FTVVVEISGLAPAQGMDCSKR 209
           FTV VE+ G    +G    K+
Sbjct: 195 FTVRVELQGKVLGRGRGRGKK 215


>gi|261492470|ref|ZP_05989024.1| ribonuclease III [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261496943|ref|ZP_05993311.1| ribonuclease III [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261307467|gb|EEY08802.1| ribonuclease III [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261311833|gb|EEY12982.1| ribonuclease III [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 224

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 75/220 (34%), Positives = 118/220 (53%), Gaps = 6/220 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++   L+K++GY F N   L +ALTH S +    ++ ERLEFLGD IL   I  +L++ F
Sbjct: 1   MQLERLQKKLGYQFHNLDYLIQALTHRSAA---TKNNERLEFLGDSILNFTIGKVLYDKF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             + EGELS    +LV  +T + +AR+ DL  ++++     K       SI +D VE++I
Sbjct: 58  PKSNEGELSRMRATLVREQTLAIIARKFDLGDYLKLGPGELKSGGFRRESILSDCVEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+YLD  +  A   V+ ++    + +  G  ++D KT LQE+   +    PEY V    
Sbjct: 118 AAIYLDQDMAKAMEKVEDWYSDLLKDISPGDSQKDPKTRLQEFLQGRKLPLPEYDVLDIK 177

Query: 182 GPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVL 220
           G  H+  F V  ++  +     G+  S+R AEQ AA + L
Sbjct: 178 GEAHNQTFRVTCKVINVEEVFIGIGTSRRKAEQNAAEKAL 217


>gi|51892591|ref|YP_075282.1| ribonuclease III [Symbiobacterium thermophilum IAM 14863]
 gi|81388984|sp|Q67PF5|RNC_SYMTH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|51856280|dbj|BAD40438.1| ribonuclease III [Symbiobacterium thermophilum IAM 14863]
          Length = 235

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 77/217 (35%), Positives = 114/217 (52%), Gaps = 9/217 (4%)

Query: 13  IGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
           +GY F + SLL +ALTH++ +  H    + ERLEFLGD +LG++I+  L+  +    EGE
Sbjct: 18  LGYEFRDESLLLEALTHTTYANEHPRARANERLEFLGDSVLGMVIAAHLYERYPDLPEGE 77

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT--SIQADVVESLIAALYL 128
           L+    ++V   + ++ AR L +   +R     R +  S     S  +D  E+++ ALYL
Sbjct: 78  LTKIRAAVVCEPSLAERARVLGIGRHMRFG---RGEAVSGRDRDSTLSDAFEAVVGALYL 134

Query: 129 DGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           DGG+E A  FV +   Q   A + G  R D KT+LQE    +    P+Y++    GP H 
Sbjct: 135 DGGLEAAQRFVLRELGQLVEAARQGLVRVDYKTQLQEQLQRQGAAAPQYRLLVEEGPAHL 194

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            RF V V   G     G   +K+ AEQ AA + L  E
Sbjct: 195 RRFQVGVYFEGRLLGTGWGRNKKEAEQEAARQALMPE 231


>gi|317491018|ref|ZP_07949454.1| ribonuclease III [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920565|gb|EFV41888.1| ribonuclease III [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 226

 Score =  114 bits (286), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 81/225 (36%), Positives = 123/225 (54%), Gaps = 6/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L+K++GY F  + LL +ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVTNRLQKKLGYTFQQQELLLQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGIFLDSDIQTIERLILDWYRSRLDEISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222
              G  HD  FT+  ++SGL+ P  G+  S+R AEQ AA + LK+
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVIGVGSSRRKAEQAAAEQALKQ 222


>gi|90580325|ref|ZP_01236132.1| ribonuclease III [Vibrio angustum S14]
 gi|90438627|gb|EAS63811.1| ribonuclease III [Vibrio angustum S14]
          Length = 224

 Score =  114 bits (286), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 72/204 (35%), Positives = 111/204 (54%), Gaps = 6/204 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L++++GY F N  L+  ALTH S + ++ E   RLEFLGD IL  +I+  L++ F S  E
Sbjct: 8   LQRKLGYQFNNCELMTLALTHRSANGTHNE---RLEFLGDSILSFVIADDLYHRFPSVDE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G++S    +LV  +T +++ RE +L   + +     K       SI AD VE++I A+YL
Sbjct: 65  GDMSRMRATLVRGKTLAELGREFELGDHLLLGPGELKSGGFRRDSILADCVEAIIGAIYL 124

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D  +E   + V  ++K R   ++ G  ++D KT LQE    +    P Y VT   G  H+
Sbjct: 125 DSDVEQVRSIVLAWYKTRLDTIEPGINQKDPKTRLQECLQGRRLPLPAYTVTKVQGEAHN 184

Query: 187 PRFTVVVEISGL-APAQGMDCSKR 209
             FTV  +++GL  P  G   S+R
Sbjct: 185 QEFTVQCDVTGLDKPVIGKGGSRR 208


>gi|77416567|sp|Q7UGZ7|RNC_RHOBA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
          Length = 266

 Score =  114 bits (286), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 78/213 (36%), Positives = 119/213 (55%), Gaps = 9/213 (4%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           +GY F +  LL  ALTH+S +     S ERLEFLGD +LGL +   LFN +    EG+L+
Sbjct: 41  LGYDFRDLDLLRSALTHASGASHRLASNERLEFLGDSVLGLTVCEWLFNEYPEYSEGDLT 100

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
              +++VS  +C +VA +L L   + V   + ++  S+  S+ +DV E++IAALY+DGG 
Sbjct: 101 KIKSAVVSRRSCGKVACKLGLDQCLIVGRGVTRNR-SYPKSLVSDVFEAVIAALYIDGGP 159

Query: 133 EVAGTFVDKYWKQRALK---SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
           E+    + K W    +      +   + K+ LQ++A  +   TP YK+   +GPDH   F
Sbjct: 160 EIVRDRL-KLWLAEEVNLAVDTQGSGNHKSVLQQFAQRELSATPVYKLIRETGPDHRKMF 218

Query: 190 TV--VVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            +  +V+    APA G +  K+ AEQ AAA  L
Sbjct: 219 LMGAMVDDRRFAPAWGNN--KKDAEQRAAANAL 249


>gi|320161647|ref|YP_004174872.1| ribonuclease III [Anaerolinea thermophila UNI-1]
 gi|319995501|dbj|BAJ64272.1| ribonuclease III [Anaerolinea thermophila UNI-1]
          Length = 237

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 78/220 (35%), Positives = 121/220 (55%), Gaps = 5/220 (2%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQESYE---RLEFLGDRILGLLISTLLFNHFDSAK 67
            R+G +F +  LL +ALTH S  + + E+ E   RLEFLGD +L  ++   L+N +    
Sbjct: 15  NRLGLSFKSFFLLSRALTHRSYLNEHPEAIEDNERLEFLGDAVLDFVVGAWLYNRYPDMP 74

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG+L+   + LVS E  S+ AR++DL   +R+     +       ++  D  E++I A+Y
Sbjct: 75  EGDLTRMRSVLVSTEQLSEFARKVDLGRALRLGKGETQAGGRDRPALLCDAFEAVIGAIY 134

Query: 128 LDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           LD GIE    F++   ++ A  + + +   D K+ LQEWA  +    P Y V   SGP+H
Sbjct: 135 LDSGIEGVRRFIEPMLEKAADEILARQTIEDPKSMLQEWAQGQGFQAPRYIVRSSSGPEH 194

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
             +F V V I+G     G+  SK+AA + AAA+ LKR G+
Sbjct: 195 SKQFEVDVLINGQIYGSGIGSSKQAATKAAAADALKRLGL 234


>gi|302338403|ref|YP_003803609.1| ribonuclease III [Spirochaeta smaragdinae DSM 11293]
 gi|301635588|gb|ADK81015.1| ribonuclease III [Spirochaeta smaragdinae DSM 11293]
          Length = 244

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 69/214 (32%), Positives = 114/214 (53%), Gaps = 5/214 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISH---SYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            EK +G  F     L  A +H S ++   +  ++ E+LEFLGD +LGL++S  LF     
Sbjct: 20  FEKHVGIRFRKLEFLNLAFSHRSFANEQGTNVDNNEKLEFLGDSVLGLVVSEYLFALLPD 79

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+L+   + +VS ++ +++AR++ + ++I +             +I AD +E++I +
Sbjct: 80  KAEGDLARVKSFVVSEDSLAEIARKIKVDNYILIGKGEEYSGGRNKKAILADCMEAIIGS 139

Query: 126 LYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            YLD G + A +FV KY      K    + ++D KT LQE+   +F   P Y +  ++GP
Sbjct: 140 FYLDSGFKAARSFVLKYLIPEINKVLENRHKKDYKTLLQEYVQKQFKSYPRYSLVKKTGP 199

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           DHD  F + V+I G     G   +K+ AEQ AA 
Sbjct: 200 DHDRTFWIEVKIDGKVYGPGKGKNKKEAEQHAAG 233


>gi|238762797|ref|ZP_04623766.1| Ribonuclease 3 [Yersinia kristensenii ATCC 33638]
 gi|238699102|gb|EEP91850.1| Ribonuclease 3 [Yersinia kristensenii ATCC 33638]
          Length = 226

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 74/212 (34%), Positives = 112/212 (52%), Gaps = 6/212 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F  + LL +ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFQQQELLLQALTHRSASSKHNE---RLEFLGDSILSFVIANELY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I   G  +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGIFLDSDIHTVGRLILDWYRSRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKR 209
              G  HD  FT+  ++SGL  P  G   S+R
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLNEPVIGTGSSRR 209


>gi|32473407|ref|NP_866401.1| ribonuclease III [Rhodopirellula baltica SH 1]
 gi|32398087|emb|CAD78182.1| ribonuclease III [Rhodopirellula baltica SH 1]
          Length = 297

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 78/213 (36%), Positives = 119/213 (55%), Gaps = 9/213 (4%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           +GY F +  LL  ALTH+S +     S ERLEFLGD +LGL +   LFN +    EG+L+
Sbjct: 72  LGYDFRDLDLLRSALTHASGASHRLASNERLEFLGDSVLGLTVCEWLFNEYPEYSEGDLT 131

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
              +++VS  +C +VA +L L   + V   + ++  S+  S+ +DV E++IAALY+DGG 
Sbjct: 132 KIKSAVVSRRSCGKVACKLGLDQCLIVGRGVTRNR-SYPKSLVSDVFEAVIAALYIDGGP 190

Query: 133 EVAGTFVDKYWKQRALK---SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
           E+    + K W    +      +   + K+ LQ++A  +   TP YK+   +GPDH   F
Sbjct: 191 EIVRDRL-KLWLAEEVNLAVDTQGSGNHKSVLQQFAQRELSATPVYKLIRETGPDHRKMF 249

Query: 190 TV--VVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            +  +V+    APA G +  K+ AEQ AAA  L
Sbjct: 250 LMGAMVDDRRFAPAWGNN--KKDAEQRAAANAL 280


>gi|15601926|ref|NP_244998.1| ribonuclease III [Pasteurella multocida subsp. multocida str. Pm70]
 gi|13431826|sp|P57805|RNC_PASMU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|12720269|gb|AAK02145.1| Rnc [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 225

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 77/217 (35%), Positives = 112/217 (51%), Gaps = 8/217 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L+++IGY F   +LL++ALTH S +  + E   RLEFLGD IL  +I+  L++ F    E
Sbjct: 8   LQRQIGYQFNQPALLKQALTHRSAAVKHNE---RLEFLGDAILNFIIAEALYHQFPKCNE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELS    +LV   T + +AR+ +L  ++ +     K       SI AD VE++I A+ L
Sbjct: 65  GELSRMRATLVREPTLASLARQFELGDYLSLGPGELKSGGFRRESILADCVEAIIGAISL 124

Query: 129 DGGIEVAGTFVDKYWKQRALK---SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           D  +      V ++W Q  LK    G  ++D KT LQE+   K    P Y V    G  H
Sbjct: 125 DSDLATTTKIV-QHWYQAQLKQIQPGDNQKDPKTRLQEYLQGKRLPLPTYNVVEIKGEAH 183

Query: 186 DPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLK 221
              FTV   +  +     G   S+R AEQ AA ++L+
Sbjct: 184 CQTFTVECYVKNIDRTFMGSGASRRKAEQAAAEKILQ 220


>gi|168188027|ref|ZP_02622662.1| ribonuclease III [Clostridium botulinum C str. Eklund]
 gi|169294133|gb|EDS76266.1| ribonuclease III [Clostridium botulinum C str. Eklund]
          Length = 237

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 79/220 (35%), Positives = 118/220 (53%), Gaps = 6/220 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64
           + +E ++   F + ++L+ ALTHSS  +  +   S ERLEFLGD IL L IS LL+N + 
Sbjct: 10  NEVENKLKVKFNDINILDTALTHSSFINENKNINSNERLEFLGDSILQLCISELLYNKYK 69

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG L+ +   +V   +  +VA++ ++  +I +S           TSI +D VE++IA
Sbjct: 70  DEPEGFLTKKRALIVCGNSLHEVAKKWNIGKYINMSKGEEMTGGRTRTSILSDCVEAIIA 129

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFG-VTPEYKVTFRS 181
           ++YLD G EVA  F+ + + +   K  S +   D KT+LQE    KFG    EY +    
Sbjct: 130 SIYLDQGYEVAKNFILENFDEIIQKAHSNEIILDYKTKLQEIIQ-KFGEYNIEYTLISFE 188

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           GP H  +F   V +  L    G   SK+ +EQ AA E LK
Sbjct: 189 GPPHRRKFVTEVSVDSLVKGIGEGYSKKESEQNAAREALK 228


>gi|218885347|ref|YP_002434668.1| ribonuclease III [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|226735370|sp|B8DPB3|RNC_DESVM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|218756301|gb|ACL07200.1| Ribonuclease III [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 230

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 115/221 (52%), Gaps = 5/221 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYE---RLEFLGDRILGLLISTLLFNH 62
           +  L+  I YAF +  LL  A+THSS ++  QE  E   RLEFLGD +L L +S  LF  
Sbjct: 2   FEKLQSDIHYAFNDAGLLATAMTHSSWANEQQEHVEHNERLEFLGDAVLELCVSEELFAR 61

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F  A+EG+L+     LVS    +++AR+L L  ++R+            +S+ +D +E++
Sbjct: 62  FPGAREGDLTRMRARLVSKPALAELARDLQLELYLRLGRGEESQGGRERSSLLSDALEAM 121

Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           + A++LDGG E A   V      R      GK  +D K+ LQE   + F   P Y +   
Sbjct: 122 LGAVFLDGGYERARAVVRHVLAARWPCDADGKRSKDYKSRLQELTQSLFRERPVYALMGS 181

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           SGP+H+ RF V + +        +  S + AEQ+AA   LK
Sbjct: 182 SGPEHEKRFEVRLTLPDGTVFTAIGPSVKRAEQMAAGLALK 222


>gi|294102050|ref|YP_003553908.1| ribonuclease III [Aminobacterium colombiense DSM 12261]
 gi|293617030|gb|ADE57184.1| ribonuclease III [Aminobacterium colombiense DSM 12261]
          Length = 240

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 116/222 (52%), Gaps = 5/222 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLISTLLFNHFD 64
           ++ ++R+GY F+ + +L++ALTH+S +H     +  ERLEFLGD +L L++S  LFN + 
Sbjct: 17  ASFQERLGYLFSKKEILQEALTHASYAHEKGLHFHNERLEFLGDAVLELIVSANLFNGYP 76

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG L+   ++LV     S   + + L   IR+   L +   S   SI AD  E+++ 
Sbjct: 77  DVDEGTLTRYRSNLVCKNALSVWGKSIGLPQIIRLGKGLEQQGAS--ASIIADTSEAVLG 134

Query: 125 ALYLDGGIEVAGTFVDKY-WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           A++ DGG   A   V +Y + Q  + +     D K+ +QE    +    P Y V    GP
Sbjct: 135 AVFSDGGFAAAQNVVRRYLFFQSNINAYDKNSDPKSLIQEETQKRGLGQPCYVVISTEGP 194

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            H P FTV ++I G     G   S + AE +AA   LK+ G+
Sbjct: 195 PHMPIFTVQLKIDGQLYGSGQGHSIKVAETLAAQRALKQVGL 236


>gi|269792704|ref|YP_003317608.1| ribonuclease III [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100339|gb|ACZ19326.1| ribonuclease III [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 226

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 81/217 (37%), Positives = 118/217 (54%), Gaps = 11/217 (5%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLISTLLFNHFDSA 66
           L+ R+GY FA+  LL +ALTHSS ++  Q  Y  ERLEFLGD +LGL ++  L+    S 
Sbjct: 14  LQDRVGYRFADTQLLIEALTHSSFANQAQLGYCNERLEFLGDSVLGLCVAEELYRRHPSE 73

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +EG L+   ++ VS+   ++  R L L   +RV   ++      M    AD +E+LI A+
Sbjct: 74  REGRLTKLKSTGVSSHNLARSGRVLGLDRVLRVGKAIKGGPSEGMV---ADAMEALIGAV 130

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT-PEYKVTFRSGPDH 185
           YLDGG+E A   V ++    +L S    +D K+ LQE A  + G+  P Y++    GP+H
Sbjct: 131 YLDGGLEAARGIVSRHVSLDSLSS----QDPKSALQEMAQ-RLGIPLPSYRLVEVRGPEH 185

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              F V V + G     G   S+R AE  AA+  L R
Sbjct: 186 RATFVVQVWLKGELMGVGNGGSRREAESKAASAALNR 222


>gi|167771632|ref|ZP_02443685.1| hypothetical protein ANACOL_03004 [Anaerotruncus colihominis DSM
           17241]
 gi|167666272|gb|EDS10402.1| hypothetical protein ANACOL_03004 [Anaerotruncus colihominis DSM
           17241]
          Length = 232

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 85/226 (37%), Positives = 119/226 (52%), Gaps = 13/226 (5%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHF 63
           S LE RIGY F N   L+ ALTHSS ++  ++   S ER EFLGD +L +++S  LF+ +
Sbjct: 11  SALEGRIGYTFQNGRYLDIALTHSSYANEVKKNISSNERQEFLGDAVLSIVVSDYLFHTY 70

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EG+L+    +LV  ++  + ++ L L  F+++             SI AD  E+LI
Sbjct: 71  HLA-EGDLTKLRAALVCEKSLWEFSQALGLGDFLKLGRGEEMMGGRTRPSILADAFEALI 129

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTF--- 179
           AA+YLDGGIE A  FV  Y              D KT LQE         PE ++++   
Sbjct: 130 AAIYLDGGIEPARRFVLGYIVDALENRDDLAFSDYKTMLQEIIQK----NPEERLSYVLV 185

Query: 180 -RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             SGPDH+ +F V V ++      G   SK++AEQ AA E LK  G
Sbjct: 186 NESGPDHNKKFLVEVRLNSNVIGVGCGGSKKSAEQAAAREALKLMG 231


>gi|327538797|gb|EGF25444.1| ribonuclease III [Rhodopirellula baltica WH47]
          Length = 297

 Score =  114 bits (285), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 78/213 (36%), Positives = 119/213 (55%), Gaps = 9/213 (4%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           +GY F +  LL  ALTH+S +     S ERLEFLGD +LGL +   LFN +    EG+L+
Sbjct: 72  LGYDFRDLDLLRSALTHASGASHRLASNERLEFLGDSVLGLTVCEWLFNEYPEYSEGDLT 131

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
              +++VS  +C +VA +L L   + V   + ++  S+  S+ +DV E++IAALY+DGG 
Sbjct: 132 KIKSAVVSRRSCGKVACKLGLDQCLIVGRGVTRNR-SYPKSLVSDVFEAVIAALYIDGGP 190

Query: 133 EVAGTFVDKYWKQRALK---SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
           E+    + K W    +      +   + K+ LQ++A  +   TP YK+   +GPDH   F
Sbjct: 191 EIVRDRL-KLWLAEEVNLAVDTQGSGNHKSVLQQFAQRELSATPVYKLIRETGPDHRKMF 249

Query: 190 TV--VVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            +  +V+    APA G +  K+ AEQ AAA  L
Sbjct: 250 LMGAMVDDRRFAPAWGNN--KKDAEQRAAANAL 280


>gi|253682200|ref|ZP_04862997.1| ribonuclease III [Clostridium botulinum D str. 1873]
 gi|253561912|gb|EES91364.1| ribonuclease III [Clostridium botulinum D str. 1873]
          Length = 236

 Score =  114 bits (285), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 79/220 (35%), Positives = 115/220 (52%), Gaps = 6/220 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLISTLLFNHFD 64
           + +E ++   F + +LL+ ALTHSS  +  +  Y  ERLEFLGD IL L IS  L+N ++
Sbjct: 10  NEVENKLNVKFNDINLLDTALTHSSFVNENKNIYSNERLEFLGDSILQLCISEFLYNKYE 69

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG L+ +   +V   +  +VA+E ++  +I +S           TSI +D VE++IA
Sbjct: 70  QEPEGFLTKKRALIVCGNSLHEVAKEWNIGKYINMSKGEEMTGGRTRTSILSDCVEAIIA 129

Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFG-VTPEYKVTFRS 181
           ++YLD G   A  F+   + +  +   S +   D KT+LQE    KFG    EYK+    
Sbjct: 130 SIYLDQGYATAKKFIIDNFNEIIQKANSDQIILDYKTKLQETIQ-KFGDYNIEYKLVSFD 188

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           GP H  +F   V I       G   SK+ AEQ AA E LK
Sbjct: 189 GPPHRRKFITEVLIDSEVKGVGEGYSKKEAEQNAAKEALK 228


>gi|258514469|ref|YP_003190691.1| ribonuclease III [Desulfotomaculum acetoxidans DSM 771]
 gi|257778174|gb|ACV62068.1| ribonuclease III [Desulfotomaculum acetoxidans DSM 771]
          Length = 259

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/214 (35%), Positives = 113/214 (52%), Gaps = 6/214 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLLFNHFD 64
           L +++G A+ + +LL +ALTHSS  +    +   + +RLEFLGD +L LL+S  L++ + 
Sbjct: 11  LMQQVGVAWNDENLLWQALTHSSYVYESGSAAHTNNQRLEFLGDAVLELLVSGYLYSSYP 70

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGEL+    ++V   + ++VAR+L+L   +R+     +       SI AD  E+L+ 
Sbjct: 71  ECAEGELTKLRAAIVCEPSLAKVARQLNLGYCLRMGKGEERSGGRERPSILADSFEALLG 130

Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YLD G+E    F  K+       +  G+  RD KTELQE    K      Y +    G
Sbjct: 131 AVYLDQGLEKTRMFALKFLAPVINDVLEGRVDRDYKTELQEMLQKKSPEPISYVILNEEG 190

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           PDH   FT  V   G+   QG   SK+ AEQ AA
Sbjct: 191 PDHQKLFTAGVVYCGIIIGQGTGRSKKEAEQQAA 224


>gi|153853253|ref|ZP_01994662.1| hypothetical protein DORLON_00647 [Dorea longicatena DSM 13814]
 gi|149754039|gb|EDM63970.1| hypothetical protein DORLON_00647 [Dorea longicatena DSM 13814]
          Length = 235

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/212 (36%), Positives = 110/212 (51%), Gaps = 5/212 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
           LE +IGY F + +L  KA+ HSS ++       E  ERLEFLGD +L L+ S  LF++  
Sbjct: 12  LEGKIGYKFDDFTLFTKAMIHSSYANEKHLPKYECNERLEFLGDAVLELVSSEFLFHNNP 71

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGEL+    S+V     +  AR+LDL  ++ +             S+ +D +E+LI 
Sbjct: 72  KLPEGELTKTRASMVCEPALAFCARDLDLGEYLLLGKGEDATGGRKRESVTSDAMEALIG 131

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A+YLDGG   A  F+ ++   + L++ K   D+KT LQE   A F     Y +    GPD
Sbjct: 132 AIYLDGGFANAKEFIHRFI-LKDLENKKLFFDSKTILQEIVQANFKEVISYHLIGEEGPD 190

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           H+  F V V I       G   +K+AAEQ AA
Sbjct: 191 HNKIFRVAVHIGEEEYGVGEGRTKKAAEQEAA 222


>gi|156740401|ref|YP_001430530.1| ribonuclease III [Roseiflexus castenholzii DSM 13941]
 gi|254807896|sp|A7NGC5|RNC_ROSCS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|156231729|gb|ABU56512.1| Ribonuclease III [Roseiflexus castenholzii DSM 13941]
          Length = 234

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 115/221 (52%), Gaps = 8/221 (3%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQE------SYERLEFLGDRILGLLISTLLFNHFDS 65
           R+   F+++ LL +ALTH S  +   +      S ERLEFLGD I+  L +TL+F  F  
Sbjct: 11  RLDVTFSDQRLLWQALTHRSFLNERVDERLSLFSNERLEFLGDAIVNFLATTLVFERFPD 70

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A EG L+    +L+  ET +  AR  DL S   ++            S+ AD  E+++AA
Sbjct: 71  AGEGYLTAWRAALIRTETLASFARRYDLGSHTLLARGEESSGARQRPSLLADTFEAVVAA 130

Query: 126 LYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +++D G++    F+   +++    L+      D K++LQ    A+ G+TP Y++  RSGP
Sbjct: 131 IFIDQGLDAVRKFLLPLFEETLATLQEQGLPVDYKSKLQARIQAERGITPRYRMIERSGP 190

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +H P FT        +   G   SK+AAEQ AA + L R G
Sbjct: 191 EHQPEFTFEALAGDESLGTGRGASKQAAEQDAARDALDRLG 231


>gi|330721516|gb|EGG99556.1| Ribonuclease III [gamma proteobacterium IMCC2047]
          Length = 210

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 109/208 (52%), Gaps = 8/208 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L + +GY F + SLL+ ALTHSS    + E   RLEFLGD ILG +I+  LF  F  A
Sbjct: 6   AKLSQSLGYQFRDESLLQTALTHSSFGQGHNE---RLEFLGDSILGWVIADALFKRFPHA 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +EG+LS     LV   T ++VAREL L  ++R+     K       SI AD  E++I A+
Sbjct: 63  REGQLSRLRAGLVKGVTLAKVARELQLGHYLRLGQGEMKSGGFRRDSILADAFEAIIGAI 122

Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           +LD  I      +   +  R  A       +D KT LQE+  ++    P+Y++   SG D
Sbjct: 123 FLDSDIATCQQIILVLFAGRLDAQTLDDTLKDPKTRLQEFLQSRKQPLPDYRILSTSGKD 182

Query: 185 HDPRFTVVVEISGLA---PAQGMDCSKR 209
           H+  F V  E+  +A    A+G + + R
Sbjct: 183 HEQVFRVACEVESIAEPFEAEGTESTLR 210


>gi|239814409|ref|YP_002943319.1| ribonuclease III [Variovorax paradoxus S110]
 gi|259646554|sp|C5CSF5|RNC_VARPS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|239800986|gb|ACS18053.1| ribonuclease III [Variovorax paradoxus S110]
          Length = 228

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/219 (35%), Positives = 116/219 (52%), Gaps = 6/219 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L++R+ ++F++  LL+ ALTH S S  + E   RLEFLGD +L L +S LL+    + 
Sbjct: 6   TALQERLKHSFSDTRLLQLALTHRSFSADHNE---RLEFLGDSVLNLAVSHLLYTRLSAL 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+LS    +LV  +T  ++A EL L+  +R+     +       SI AD +E+LI A+
Sbjct: 63  PEGDLSRVRANLVKQDTLHRLALELQLSPLLRLGEGEARSGGPNRPSILADALEALIGAV 122

Query: 127 YLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD G   A   V + ++   +  +     +D KTELQEW        P Y+V    G  
Sbjct: 123 YLDAGFSAAEALVRRLYESVEINPRMDAVAKDPKTELQEWLQGHKMKLPVYRVAATLGAA 182

Query: 185 HDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222
           H   F V  E+  L    +G+  S+RA EQ AAA +L R
Sbjct: 183 HKQTFDVECEVPELGLRERGIGGSRRAGEQAAAAAMLIR 221


>gi|325275444|ref|ZP_08141375.1| ribonuclease III [Pseudomonas sp. TJI-51]
 gi|324099420|gb|EGB97335.1| ribonuclease III [Pseudomonas sp. TJI-51]
          Length = 229

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/220 (37%), Positives = 113/220 (51%), Gaps = 6/220 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE+++GY F N+  +  ALTH S +     + ERLEFLGD IL  +    LF  F  A+E
Sbjct: 8   LERKLGYTFKNQDQMLLALTHRSYAG---RNNERLEFLGDAILNFVAGEALFERFPQARE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS     LV  ET +++AR  DL  ++R+ S   K       SI AD +E+LI A+YL
Sbjct: 65  GQLSRLRARLVKGETLARLARGFDLGEYLRLGSGELKSGGFRRESILADALEALIGAIYL 124

Query: 129 DGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D  +E A   V  +       L      +D KT LQE+  ++    P Y+V    G  H 
Sbjct: 125 DADMETARERVLAWLANEFEGLTLVDTNKDPKTRLQEFLQSRSCELPRYEVVDIQGEPHC 184

Query: 187 PRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225
             F V  E+  L   ++G   S+R AEQVAAA  L   G+
Sbjct: 185 RTFFVECEVVLLNNKSRGQGVSRRIAEQVAAASALIALGV 224


>gi|332799147|ref|YP_004460646.1| Ribonuclease 3 [Tepidanaerobacter sp. Re1]
 gi|332696882|gb|AEE91339.1| Ribonuclease 3 [Tepidanaerobacter sp. Re1]
          Length = 238

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/220 (35%), Positives = 112/220 (50%), Gaps = 6/220 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTLLFNHFD 64
           L++ IG  F N + L +A  H S+++     YQE+ +RLEFLGD +L L IS  L+ H+D
Sbjct: 14  LQENIGIQFNNLNTLNQAFIHPSLTNEKEKPYQENNQRLEFLGDAVLELAISEYLYRHYD 73

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+++      V   + +Q+AR+L L  ++ +S            SI AD +E+LI 
Sbjct: 74  FLTEGQMTKIRAFTVCESSLAQIARQLFLGDYLILSKGEENTGGREKVSILADTLEALIG 133

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+Y+D   +    F+ K  +    K+  G++  D KT+LQE           Y V   SG
Sbjct: 134 AIYIDKNYKTTYDFIIKNLEAIIFKAIQGEWGTDYKTDLQELLQKFDEDKILYNVVNESG 193

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           PDHD  F V V         G+  SK+ AEQ AA E L R
Sbjct: 194 PDHDKLFCVEVVWKNKILGTGIGKSKKQAEQNAAKEALDR 233


>gi|163750600|ref|ZP_02157837.1| ribonuclease III [Shewanella benthica KT99]
 gi|161329595|gb|EDQ00586.1| ribonuclease III [Shewanella benthica KT99]
          Length = 230

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/215 (36%), Positives = 115/215 (53%), Gaps = 5/215 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L + +GY F  ++LL++ALTH S +  + E   RLEFLGD IL ++IS  L++ F    E
Sbjct: 15  LCRTLGYQFNQQALLDQALTHRSANSKHNE---RLEFLGDSILSIIISDALYHQFPKVTE 71

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    +LV  +  +++  E  L  ++++     K       SI AD VE++I A+YL
Sbjct: 72  GDLSRMRATLVCGKMLAEIGFEFKLGDYLKLGPGELKSGGFRRESIIADGVEAIIGAIYL 131

Query: 129 DGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           D   E     V  +++ R A+     ++D KT LQE         P YKVT   G  H  
Sbjct: 132 DADFETCRARVLSWYESRLAIIEPINQKDPKTLLQELLQGFKKPLPVYKVTDIKGEAHAQ 191

Query: 188 RFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLK 221
            FTV   +  L  P  G+  S+R AEQ+AAA+VL+
Sbjct: 192 TFTVECSVEELKKPLVGVASSRRKAEQIAAAKVLE 226


>gi|327479794|gb|AEA83104.1| ribonuclease III [Pseudomonas stutzeri DSM 4166]
          Length = 229

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/220 (37%), Positives = 116/220 (52%), Gaps = 6/220 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE+++GY F ++ L+  ALTH S +     + ERLEFLGD IL  +    LFNHF  A+E
Sbjct: 8   LERKLGYQFKDQELMLLALTHRSYA---GRNNERLEFLGDAILNFVAGEALFNHFPQARE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS     LV  ET + +AR  +L   +R+ S   K       SI AD +E+LI A+YL
Sbjct: 65  GQLSRLRARLVKGETLAVLARGFELGDHLRLGSGELKSGGYRRESILADTLEALIGAIYL 124

Query: 129 DGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D G++VA   V  +     + L      +D KT LQE+  ++    P Y+V    G  H 
Sbjct: 125 DAGMDVARERVIAWLANELQGLTLVDTNKDPKTRLQEFLQSRACELPRYEVVDIQGEPHC 184

Query: 187 PRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKREGI 225
             F V  +++ L     G   S+R AEQVAAA  L   G+
Sbjct: 185 RTFFVECQVALLNDKTHGQGASRRIAEQVAAAAALIALGV 224


>gi|58700160|ref|ZP_00374668.1| ribonuclease III [Wolbachia endosymbiont of Drosophila ananassae]
 gi|58533321|gb|EAL57812.1| ribonuclease III [Wolbachia endosymbiont of Drosophila ananassae]
          Length = 183

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/178 (35%), Positives = 96/178 (53%)

Query: 47  GDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD 106
           GD +L +++S  LF  F   KEG L+ R   LV   T + VA+E+ L SFI +++  R +
Sbjct: 1   GDSVLNMVVSATLFKLFPEEKEGALAKRKTDLVCGNTIANVAKEIKLGSFIIMNNSERCN 60

Query: 107 VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH 166
                     + +E+LI A+Y+DGG+E    F+ +YW++ A       +D KT LQEW  
Sbjct: 61  GGRCNLKNLENSLEALIGAIYIDGGLENVEKFIIQYWEKLAKGMLDPPQDPKTSLQEWTQ 120

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
                 PEY++  ++GP H+P FT+ V I           SK+ AEQ AA  +L++ G
Sbjct: 121 KNKLPLPEYELVKQTGPAHNPEFTISVCIEDYGKVSACASSKKIAEQKAAELMLEKIG 178


>gi|77457221|ref|YP_346726.1| ribonuclease III [Pseudomonas fluorescens Pf0-1]
 gi|90101638|sp|Q3KHL9|RNC_PSEPF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|77381224|gb|ABA72737.1| ribonuclease III [Pseudomonas fluorescens Pf0-1]
          Length = 229

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/230 (37%), Positives = 122/230 (53%), Gaps = 22/230 (9%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S LE+++GY F ++ L+  ALTH S +     + ERLEFLGD IL  +    LF+ F  A
Sbjct: 6   SRLERQLGYTFKDQELMVLALTHRSFAG---RNNERLEFLGDAILNFVAGEALFDRFPLA 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +EG+LS     LV  ET + +AR  DL  ++R+ S   K       SI AD +E+LI A+
Sbjct: 63  REGQLSRLRARLVKGETLAVLARGFDLGDYLRLGSGELKSGGFRRESILADALEALIGAI 122

Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKF--------RRDAKTELQEWAHAKFGVTPEYK 176
           YLD G+EVA        ++R L   +G+F         +D KT LQE+  ++    P Y+
Sbjct: 123 YLDAGMEVA--------RERVLAWLAGEFEGLTLVDTNKDPKTRLQEFLQSRGCELPRYE 174

Query: 177 VTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225
           V    G  H   F V  E+  L   ++G   S+R AEQVAAA  L   G+
Sbjct: 175 VVDIQGEPHCRTFFVECEVVLLNEKSRGQGVSRRIAEQVAAAAALIALGV 224


>gi|332529447|ref|ZP_08405406.1| ribonuclease III [Hylemonella gracilis ATCC 19624]
 gi|332041093|gb|EGI77460.1| ribonuclease III [Hylemonella gracilis ATCC 19624]
          Length = 223

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/216 (35%), Positives = 116/216 (53%), Gaps = 6/216 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L+  +   F + +LL++ALTH S    + E   RLEFLGD +L L ++ LL+    +  E
Sbjct: 3   LQDHLQRPFTDAALLQRALTHRSFCADHNE---RLEFLGDSVLNLAVADLLYQRLHALPE 59

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    +LV  ET  Q+A EL L+  +R+     +   +   SI AD +E+LI A+YL
Sbjct: 60  GDLSRIRANLVKQETLHQLAMELGLSDLLRLGEGELRSGGNKRPSILADALEALIGAVYL 119

Query: 129 DGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D G   A   V   +++  +  +     +D KTELQEW  A+    P+Y+V   +G  H 
Sbjct: 120 DAGYAAAQALVHHLYEKVEVTPQMQASAKDPKTELQEWLQARKLKLPQYRVVATTGAAHR 179

Query: 187 PRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLK 221
             F V  E+S     + G+  S+RA EQ AAA +L+
Sbjct: 180 QTFDVECEVSEFQLTERGIGGSRRAGEQAAAAAMLQ 215


>gi|294139709|ref|YP_003555687.1| ribonuclease III [Shewanella violacea DSS12]
 gi|293326178|dbj|BAJ00909.1| ribonuclease III [Shewanella violacea DSS12]
          Length = 225

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/215 (36%), Positives = 115/215 (53%), Gaps = 5/215 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L + +GY F  ++ L++ALTH S S  + E   RLEFLGD IL ++IS  L++ F    E
Sbjct: 10  LCRTLGYQFTQQAHLDQALTHRSASSKHNE---RLEFLGDSILSIIISDALYHQFPKVTE 66

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    +LV  +  +++  E  L  ++++     K       SI AD VE++I A+YL
Sbjct: 67  GDLSRMRATLVCGKMLAEIGFEFKLGDYLKLGPGELKSGGFRRESIIADGVEAIIGAIYL 126

Query: 129 DGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           D  +E     V  +++ R A+     ++D KT LQE         P YKVT   G  H  
Sbjct: 127 DADLETCRARVLSWYESRLAIIEPINQKDPKTLLQELLQGFKKPLPVYKVTDIKGEAHAQ 186

Query: 188 RFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLK 221
            FTV   +  L  P  G+  S+R AEQ+AAA+VL+
Sbjct: 187 TFTVECSVEELKKPLVGVASSRRKAEQIAAAQVLE 221


>gi|302386299|ref|YP_003822121.1| ribonuclease III [Clostridium saccharolyticum WM1]
 gi|302196927|gb|ADL04498.1| ribonuclease III [Clostridium saccharolyticum WM1]
          Length = 233

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/212 (34%), Positives = 113/212 (53%), Gaps = 5/212 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
           LE+RIGY F++R L+ +A+THSS ++ ++    E  ERLEFLGD +L ++ S  L++ + 
Sbjct: 8   LEERIGYRFSDRHLMTQAMTHSSYANEHRLNKLECNERLEFLGDSVLEVVSSDCLYHKYP 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+L+    S+V   T +  A  + L  ++ +             SI +D +E+LI 
Sbjct: 68  EKPEGDLTKIRASIVCEPTLAYCAESIRLGEYLLLGKGEEATGGRGRASIVSDAMEALIG 127

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A+YLDGG   A  F+ ++     L+  +   D+KT LQE    K      Y++    GPD
Sbjct: 128 AIYLDGGFANAKEFILRFI-MNDLEHKQLFYDSKTILQEIVQRKTDEPLSYELLREEGPD 186

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           H+  F   V I      QG   +K+AAEQVAA
Sbjct: 187 HNKVFEAQVLIGQEVIGQGTGRTKKAAEQVAA 218


>gi|329894313|ref|ZP_08270183.1| Ribonuclease III [gamma proteobacterium IMCC3088]
 gi|328923109|gb|EGG30432.1| Ribonuclease III [gamma proteobacterium IMCC3088]
          Length = 221

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/226 (35%), Positives = 119/226 (52%), Gaps = 14/226 (6%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++ S L++ IGY F + SL+E AL H S+     ++ ERLEFLGD ++  +++  LF  +
Sbjct: 1   MQLSALQQAIGYQFKDLSLIELALAHRSVG---AKNNERLEFLGDSLVNHVVAEALFKRY 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EGE+S R   LV  ET + +ARE +L  F+ +    RK       SI AD +E++ 
Sbjct: 58  PKAPEGEMSRRRAYLVKGETLAAIAREKNLGDFVELGQGERKSGGHRRKSILADALEAVA 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+ LD   E A   V  +++ R      F   +DAKT LQEW   +    PEY +    
Sbjct: 118 AAILLDSDFETAKQVVFAWFRDRLNDETSFAASKDAKTSLQEWLQGRGLALPEYHLVATR 177

Query: 182 GPDHDPRFTVVVEISGLAPAQGMD-----CSKRAAEQVAAAEVLKR 222
           G DH   F V   +    P++G+       S+R AEQ +A ++L R
Sbjct: 178 GEDHQKVFVVECRV----PSKGLKETASASSRRRAEQTSAQQILDR 219


>gi|225850066|ref|YP_002730300.1| ribonuclease III [Persephonella marina EX-H1]
 gi|225645108|gb|ACO03294.1| ribonuclease III [Persephonella marina EX-H1]
          Length = 249

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 115/220 (52%), Gaps = 8/220 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFN 61
           R   LE+++GY F +++L   ALTHSS +  Y +    YE LEFLGD +L L++S +L  
Sbjct: 12  RIKKLEQKLGYVFKDKNLPLTALTHSSFAAEYHKEIKDYEVLEFLGDAVLSLIVSEILIK 71

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F  A EGELS   ++++S    S++AR L L   + +S            S+  DV ES
Sbjct: 72  TFPEASEGELSQTRSAVISEAYLSRLARILGLNELVLLSRGEIAQKGMERESLLCDVFES 131

Query: 122 LIAALYLDG--GIEVAGTFVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           +  A+Y+D    I++     ++++K     ++K G   RD K+ LQ      FGV P+Y 
Sbjct: 132 VFGAVYVDCDYDIKIPREIFNRFFKDYLIESIKKGNIPRDYKSILQIMTQRLFGVVPKYS 191

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           +    GP+H+  FT+   +  +    G   SK+ AE  AA
Sbjct: 192 MVSAEGPEHEKIFTMECSVDNVVRTFGTGKSKKEAETEAA 231


>gi|257468859|ref|ZP_05632953.1| ribonuclease III [Fusobacterium ulcerans ATCC 49185]
 gi|317063109|ref|ZP_07927594.1| ribonuclease III [Fusobacterium ulcerans ATCC 49185]
 gi|313688785|gb|EFS25620.1| ribonuclease III [Fusobacterium ulcerans ATCC 49185]
          Length = 235

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 123/229 (53%), Gaps = 7/229 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLF 60
            Y  LE  +GY+F N+ LL+ +L H S  + +    + S ERLE LGD +L L+++  L+
Sbjct: 4   NYLELEGNLGYSFNNKELLKNSLIHRSFGNEHWRYKKISNERLELLGDAVLDLVVTEYLY 63

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
              +S+ EG+L+   + +VS    + +++++D+  ++ +S           +SI  D  E
Sbjct: 64  KSHESSTEGDLAKIKSMVVSEPVLASISKKMDVGKYLLLSKGEEMTGGRERSSILGDAFE 123

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178
           +++ A+YLD   E A  +   + +       K     D KT LQE++  ++ + P Y+V 
Sbjct: 124 AILGAIYLDSDFETAKKYALSHIQDSIDHVDKNEDILDFKTILQEYSQREYKIIPSYEVI 183

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
             +GPDH   F + V+I G    +G   +K++AEQ AA E+ K+ G+ T
Sbjct: 184 RETGPDHQKIFEIEVKI-GDRTGRGTGKNKKSAEQSAAKELCKKLGVKT 231


>gi|223041196|ref|ZP_03611448.1| ribonuclease III [Campylobacter rectus RM3267]
 gi|222877555|gb|EEF12684.1| ribonuclease III [Campylobacter rectus RM3267]
          Length = 222

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 113/217 (52%), Gaps = 6/217 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            LE+++GY F +  LL+ ALTH S+        ERLEFLGD ++ L+I   LF+ F    
Sbjct: 3   NLEEKLGYKFKDEKLLKTALTHKSVKGGANN--ERLEFLGDAVMDLVIGDYLFHKFSRLS 60

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG+LS    +LV+ ++ +++A+ L+L   I +S     +      SI +D  E+L+ A+Y
Sbjct: 61  EGDLSKLRAALVNEKSFAELAKYLNLGQLINISPAEEHNGGRLKASILSDAFEALMGAIY 120

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           L+ G +       K + +R      F R   D KT LQE   A+F   P+Y +    GPD
Sbjct: 121 LESGFDAVRAASLKAF-ERCYPDINFDRMVKDYKTALQELTQARFAEIPKYVLVGSKGPD 179

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           H   F + + ++    ++    SK+ AEQ AA   L+
Sbjct: 180 HKKEFEIALMLNEREISRAAGKSKKEAEQKAAKTALE 216


>gi|239624036|ref|ZP_04667067.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522067|gb|EEQ61933.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 235

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/212 (33%), Positives = 116/212 (54%), Gaps = 5/212 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESY----ERLEFLGDRILGLLISTLLFNHFD 64
           LE+RI Y F ++SL  +ALTHSS ++ ++  +    ERLEFLGD +L ++ S  L++ + 
Sbjct: 8   LEERIDYQFKDQSLFSQALTHSSYANEHRLDHSRCNERLEFLGDAVLEIVTSDFLYHKYA 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EG+L+    S+V   T +  A ++ L  ++ +             S+ +D +E+LI 
Sbjct: 68  TLPEGDLTKIRASIVCEPTLAYCAGDIRLGEYLFLGKGEDATGGRGRNSVVSDAMEALIG 127

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A+YLDGG   A  F+ ++     ++  +   D+KT LQE   ++      Y++    GPD
Sbjct: 128 AIYLDGGFANAKEFIHRFILND-IEHKQLFYDSKTILQEMVQSRQAEALSYEILREEGPD 186

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           H+  F V  +I      +GM  +K+AAEQVAA
Sbjct: 187 HNKSFEVCAKIGDAEIGRGMGRTKKAAEQVAA 218


>gi|217967335|ref|YP_002352841.1| Ribonuclease III [Dictyoglomus turgidum DSM 6724]
 gi|217336434|gb|ACK42227.1| Ribonuclease III [Dictyoglomus turgidum DSM 6724]
          Length = 238

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/210 (35%), Positives = 115/210 (54%), Gaps = 5/210 (2%)

Query: 16  AFANRSLLEKALTHSSISH---SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           +F ++ LL +ALTH S  H   ++++  +RLEFLGD +L ++I+ +LF  +  A EG L+
Sbjct: 25  SFNDKDLLIEALTHPSFKHENPNFKQDNQRLEFLGDAVLNMIITEILFQRYREASEGFLT 84

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
            +   LV  ET  + A+ LDL   I +     K       SI +D+ E+ I ALYLD G 
Sbjct: 85  QKRIYLVKEETLYKKAKSLDLGELILLGVGEEKQGGRDKISILSDLFEAFIGALYLDKGY 144

Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
           E    FV++ +K+  ++S +   D K  LQ +   K G  P+Y V+   GP+HD  F V 
Sbjct: 145 EYTKNFVEEIFKE-EIESIEMEVDWKNLLQTYLQ-KEGKKPQYIVSREVGPEHDKTFYVE 202

Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           + I     ++G   +KR AE  AA + L++
Sbjct: 203 LWIDDEKISEGEGKNKREAEIKAAQKALEK 232


>gi|242280465|ref|YP_002992594.1| ribonuclease III [Desulfovibrio salexigens DSM 2638]
 gi|242123359|gb|ACS81055.1| ribonuclease III [Desulfovibrio salexigens DSM 2638]
          Length = 234

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 117/220 (53%), Gaps = 5/220 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYE---RLEFLGDRILGLLISTLLFNH 62
           +S L++ I Y F+    L  ALTHSS ++   E  E   RLEFLGD +L L ++  LF  
Sbjct: 5   FSRLQQGIHYRFSQVKHLATALTHSSWANEQPEPVEDNERLEFLGDAVLELCVTEELFKR 64

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F  A EG+L+   + LV  ++ + +ARELD+  F+++            +S+ AD +E++
Sbjct: 65  FKGAHEGQLTKIRSKLVKEKSLATIARELDINDFLKLGRGEEAQGGRNRSSLLADAMEAV 124

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFR 180
           I A++LDGG   A  F+ + +  +   + K    +D K++LQE   A+F   P Y +T  
Sbjct: 125 IGAVFLDGGYAEAQKFIMRIFANKWPATFKIESSKDFKSKLQEVTQARFKERPTYVLTGT 184

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            GP+H+  F V + +           S + AEQ AAA+ L
Sbjct: 185 KGPEHEKIFMVNLNLPDGKSFDSEGSSLKKAEQTAAAKAL 224


>gi|257791118|ref|YP_003181724.1| ribonuclease III [Eggerthella lenta DSM 2243]
 gi|317488154|ref|ZP_07946728.1| ribonuclease III [Eggerthella sp. 1_3_56FAA]
 gi|257475015|gb|ACV55335.1| ribonuclease III [Eggerthella lenta DSM 2243]
 gi|316912741|gb|EFV34276.1| ribonuclease III [Eggerthella sp. 1_3_56FAA]
          Length = 281

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/215 (37%), Positives = 109/215 (50%), Gaps = 4/215 (1%)

Query: 13  IGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
           +GY FA+  LL  A+TH S +   S + SYERLEFLGD ILG +++T+ F+ F    EG 
Sbjct: 18  LGYRFADEQLLLSAITHPSATEGKSVKYSYERLEFLGDSILGAIVATIAFDRFHDLDEGG 77

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           L+    +LVS  + S VA  L  A  I   S         + S   +V E+++AAL+LDG
Sbjct: 78  LTRIKVALVSGASLSDVAERLGFADVIVFGSSETGTGRRGLHSALENVYEAVVAALFLDG 137

Query: 131 GIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
           GIE A  FV      R +    +   + K+ LQE      G+TP YK+    GP HD  F
Sbjct: 138 GIEAAEGFVRATLIPRMSADMAREPENPKSALQEKLQED-GITPTYKLVETQGPPHDRTF 196

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              V       A+G   +K+ AE  AA   L R G
Sbjct: 197 VAQVFAGSQGLARGTGRTKKEAESQAAKSTLARLG 231


>gi|237748853|ref|ZP_04579333.1| ribonuclease III [Oxalobacter formigenes OXCC13]
 gi|229380215|gb|EEO30306.1| ribonuclease III [Oxalobacter formigenes OXCC13]
          Length = 277

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 114/223 (51%), Gaps = 6/223 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           ++ +  + L++RIGY+F    LL+ ALTH S S  + E   RLEFLGD +L  + +  L+
Sbjct: 9   IAMMNVNVLQERIGYSFRQIDLLQTALTHRSFSSHHNE---RLEFLGDSLLNCVTAINLY 65

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             +    EG LS   +SLV  +   ++A++LD++SF+R+     K       SI AD +E
Sbjct: 66  ERYVELNEGNLSRLRSSLVRQQALYEIAQKLDMSSFLRLGEGELKAGGFKRPSILADAME 125

Query: 121 SLIAALYLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +L  A++LD   E     + + +    + L    F +DAKT+LQE+        PEY+V 
Sbjct: 126 ALFGAIFLDSDFETVRRVITQLFTDMMKGLDPETFGKDAKTQLQEYLQGHKLALPEYQVV 185

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVL 220
              G  H+  F +   I        G   S+RA EQ AA + L
Sbjct: 186 ATHGAAHNQEFEIECTIGKFGIHVFGTGSSRRAGEQEAAQKAL 228


>gi|327470651|gb|EGF16107.1| ribonuclease III [Streptococcus sanguinis SK330]
          Length = 232

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/229 (33%), Positives = 118/229 (51%), Gaps = 8/229 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + LE +    F++ +LLE A TH+S ++ ++       ERLEFLGD +L L+IS
Sbjct: 1   MENLKKALLE-QFDLVFSDETLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS   + +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYTKYPKRPEGDLSKLRSMIVREESLAGFARDCQFDQFIKLGRGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D+ E+ + AL LD G+E   +F+ +    + +++G F R  D KT+LQE       V   
Sbjct: 120 DLFEAFLGALLLDKGVEAVKSFLYQVMIPK-VEAGDFERVTDYKTKLQELLQINGDVEIA 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           Y+V   +GP H   F V V I+G    QG   SK+ AEQ AA    K+E
Sbjct: 179 YQVVSETGPAHAKNFEVAVLINGCKSGQGQGRSKKLAEQEAAKNAFKKE 227


>gi|187251071|ref|YP_001875553.1| ribonuclease III [Elusimicrobium minutum Pei191]
 gi|186971231|gb|ACC98216.1| Ribonuclease III [Elusimicrobium minutum Pei191]
          Length = 221

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/216 (32%), Positives = 117/216 (54%), Gaps = 4/216 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           +E+ + Y+F N+ L+ +ALTH S +   +  +  ERLEFLGD +LGL+ +  +++ +   
Sbjct: 5   IEQVLDYSFKNKELIREALTHKSFTGERRSVKHNERLEFLGDSVLGLVAAEYIYSKYPEV 64

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +EG LS   + LVS       A ELDL +++ + +           SI ++ +E+++ A+
Sbjct: 65  EEGVLSKIKSGLVSRHNLYLWASELDLGAYLALGAGEAATGGRTRESILSNAMEAVLGAV 124

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           YLDGG E     ++K+   ++L   +   D K+ LQE    K+   PEY+V    GP+H+
Sbjct: 125 YLDGGFESVKNIINKWISTQSLT--EVSSDYKSTLQEIVQKKYKSVPEYEVIQTVGPEHE 182

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             FTVVV        +G   +K+ AEQ AA   L+ 
Sbjct: 183 KIFTVVVSSLKKELGRGRGKNKKLAEQDAAKNALEN 218


>gi|315221419|ref|ZP_07863340.1| ribonuclease III [Streptococcus anginosus F0211]
 gi|315189538|gb|EFU23232.1| ribonuclease III [Streptococcus anginosus F0211]
          Length = 232

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 113/224 (50%), Gaps = 7/224 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +  L ++ G  F +  LLE A TH+S ++ ++       ERLEFLGD +L LLIS  L+ 
Sbjct: 5   HKVLSQQFGIVFQDEKLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLISEYLYK 64

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +    EG+LS   +++V  E+ +  +R+     FI++     K       +I  D+ E+
Sbjct: 65  KYPKKPEGDLSKLRSTIVREESLAGFSRDCQFDQFIKLGRGEEKSGGRNRDTILGDLFEA 124

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179
            + AL LD G+E    F+ +    + ++ G F +  D KT+LQE       V   Y+VT 
Sbjct: 125 FLGALLLDKGVEAVKNFLYQVMIPK-VEVGDFEQVIDYKTKLQELLQVNGDVEIVYQVTS 183

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            SGP H   F V V + G    QG   SK+ AEQ AA    ++E
Sbjct: 184 ESGPAHAKEFAVAVSVDGRTVGQGQGRSKKLAEQEAAKNAFEKE 227


>gi|40063418|gb|AAR38229.1| ribonuclease III [uncultured marine bacterium 580]
          Length = 231

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 113/223 (50%), Gaps = 6/223 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M       LEK I Y F +  LL  A+TH S  HS   + ERLEFLGD IL  +++ LLF
Sbjct: 1   METKELKILEKSIKYKFKDDKLLALAMTHRS--HSGMNN-ERLEFLGDSILNFVVADLLF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F+   EG+LS   + LV  E  S++  EL +  F+ +     K       SI AD  E
Sbjct: 58  KKFNDLDEGDLSRLRSQLVKEEPLSKLGNELKIGDFLNLGVGELKSSGWRRPSILADAFE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI A+++DGG++ A  F++  +      +   +  +D KT LQE+  A+    P Y+V 
Sbjct: 118 ALIGAIFIDGGMKSAYKFIEDSYADLIEKINPKEIYKDPKTILQEFLQAQKVPLPSYEVI 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVL 220
              G  H+  FTV   +S      +G   S++ AEQ AA E +
Sbjct: 178 NVEGEAHNQLFTVTCVVSKFDVKVEGGGRSRKIAEQEAAKEAM 220


>gi|325830746|ref|ZP_08164130.1| ribonuclease III [Eggerthella sp. HGA1]
 gi|325487153|gb|EGC89596.1| ribonuclease III [Eggerthella sp. HGA1]
          Length = 304

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/215 (37%), Positives = 109/215 (50%), Gaps = 4/215 (1%)

Query: 13  IGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
           +GY FA+  LL  A+TH S +   S + SYERLEFLGD ILG +++T+ F+ F    EG 
Sbjct: 41  LGYRFADEQLLLSAITHPSATEGKSVKYSYERLEFLGDSILGAIVATIAFDRFHDLDEGG 100

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           L+    +LVS  + S VA  L  A  I   S         + S   +V E+++AAL+LDG
Sbjct: 101 LTRIKVALVSGASLSDVAERLGFADVIVFGSSETGTGRRGLHSALENVYEAVVAALFLDG 160

Query: 131 GIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
           GIE A  FV      R +    +   + K+ LQE      G+TP YK+    GP HD  F
Sbjct: 161 GIEAAEGFVRATLIPRMSADMAREPENPKSALQEKLQED-GITPTYKLVETQGPPHDRTF 219

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              V       A+G   +K+ AE  AA   L R G
Sbjct: 220 VAQVFAGSQGLARGTGRTKKEAESQAAKSTLARLG 254


>gi|269127639|ref|YP_003301009.1| ribonuclease III [Thermomonospora curvata DSM 43183]
 gi|268312597|gb|ACY98971.1| ribonuclease III [Thermomonospora curvata DSM 43183]
          Length = 268

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/213 (37%), Positives = 114/213 (53%), Gaps = 8/213 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE+ +G +  +R LLE+ALTH S ++      + ERLEFLGD +LGL+++  LF +    
Sbjct: 29  LERALGVSI-SRELLERALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLFRNHPDL 87

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+L+    ++V+    + VAR L   ++IR+            TSI AD +E+LI A+
Sbjct: 88  PEGQLAKLRAAVVNMRALAGVARSLGAGAYIRLGRGEEGTGGRDKTSILADTLEALIGAV 147

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEW-AHAKFGVTPEYKVTFRSGP 183
           YL+ G++ A   V + +     KS       D KT LQE  A  + GV PEY V   SGP
Sbjct: 148 YLEHGLDEAAKLVHRLFDSLIDKSASLGAGLDWKTSLQELTAEEELGV-PEYHVA-ESGP 205

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           DH   F   V + G+    G   SK+ AEQ AA
Sbjct: 206 DHQKTFRATVRVGGVTYGSGEGRSKKEAEQRAA 238


>gi|89075088|ref|ZP_01161529.1| ribonuclease III [Photobacterium sp. SKA34]
 gi|89049175|gb|EAR54740.1| ribonuclease III [Photobacterium sp. SKA34]
          Length = 239

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/204 (34%), Positives = 110/204 (53%), Gaps = 6/204 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L++++GY F N  L+  ALTH S + ++ E   RLEFLGD IL  +++  L++ F S  E
Sbjct: 23  LQRKLGYQFNNCELMTLALTHRSANGTHNE---RLEFLGDSILSFVVADDLYHRFPSVDE 79

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G++S    +LV  +T +++ RE +L   + +     K       SI AD VE++I A+YL
Sbjct: 80  GDMSRMRATLVRGKTLAELGREFELGDHLLLGPGELKSGGFRRDSILADCVEAIIGAIYL 139

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D  +E     V  ++K R   ++ G  ++D KT LQE    +    P Y VT   G  H+
Sbjct: 140 DSDVEQVRRIVLAWYKTRLDTIEPGINQKDPKTRLQECLQGRRLPLPAYTVTKVQGEAHN 199

Query: 187 PRFTVVVEISGL-APAQGMDCSKR 209
             FTV  +++GL  P  G   S+R
Sbjct: 200 QEFTVQCDVTGLDKPVIGKGGSRR 223


>gi|70728453|ref|YP_258202.1| ribonuclease III [Pseudomonas fluorescens Pf-5]
 gi|68342752|gb|AAY90358.1| ribonuclease III [Pseudomonas fluorescens Pf-5]
          Length = 225

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/222 (37%), Positives = 118/222 (53%), Gaps = 6/222 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S LE+++GY+F ++ L+  ALTH S +     + ERLEFLGD IL  +    LF  F  A
Sbjct: 2   SRLERQLGYSFKDQELMLLALTHRSFAG---RNNERLEFLGDAILNFVAGEALFERFPQA 58

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +EG+LS     LV  ET + +AR  DL  ++R+ S   K       SI AD +E+LI A+
Sbjct: 59  REGQLSRLRARLVKGETLAVLARGFDLGEYLRLGSGELKSGGFRRESILADALEALIGAI 118

Query: 127 YLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD G+E A   V  +      +L      +D KT LQE+  ++    P Y+V    G  
Sbjct: 119 YLDAGMETARDRVLSWLASEFESLTLVDTNKDPKTRLQEFLQSRACELPRYEVVDIQGEP 178

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225
           H   F V  E++ L   ++G   S+R AEQVAAA  L   G+
Sbjct: 179 HCRTFFVECEVTLLNEKSRGQGVSRRIAEQVAAAAALIALGV 220


>gi|66047178|ref|YP_237019.1| ribonuclease III [Pseudomonas syringae pv. syringae B728a]
 gi|257486563|ref|ZP_05640604.1| ribonuclease III [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289628144|ref|ZP_06461098.1| ribonuclease III [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289649890|ref|ZP_06481233.1| ribonuclease III [Pseudomonas syringae pv. aesculi str. 2250]
 gi|289676656|ref|ZP_06497546.1| ribonuclease III [Pseudomonas syringae pv. syringae FF5]
 gi|298488677|ref|ZP_07006706.1| Ribonuclease III [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|302186917|ref|ZP_07263590.1| ribonuclease III [Pseudomonas syringae pv. syringae 642]
 gi|75500898|sp|Q4ZPE1|RNC_PSEU2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|63257885|gb|AAY38981.1| Ribonuclease III [Pseudomonas syringae pv. syringae B728a]
 gi|298156750|gb|EFH97841.1| Ribonuclease III [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|330871241|gb|EGH05950.1| ribonuclease III [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330898515|gb|EGH29934.1| ribonuclease III [Pseudomonas syringae pv. japonica str. M301072PT]
 gi|330950056|gb|EGH50316.1| ribonuclease III [Pseudomonas syringae Cit 7]
 gi|330973032|gb|EGH73098.1| ribonuclease III [Pseudomonas syringae pv. aceris str. M302273PT]
 gi|330989032|gb|EGH87135.1| ribonuclease III [Pseudomonas syringae pv. lachrymans str. M301315]
 gi|331010046|gb|EGH90102.1| ribonuclease III [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 229

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/222 (38%), Positives = 117/222 (52%), Gaps = 6/222 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S LE+++GY F ++ L+  ALTH S +     + ERLEFLGD IL  +    LF  F  A
Sbjct: 6   SRLERQLGYTFKDQELMVLALTHRSFAGR---NNERLEFLGDAILNFVAGEALFERFPQA 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +EG+LS     LV  ET + +AR  DL  ++R+ S   K       SI AD +E+LI A+
Sbjct: 63  REGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADALEALIGAI 122

Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD G+E A   V  +      +L      +D KT LQE+  ++    P Y+V    G  
Sbjct: 123 YLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACELPRYEVVDIQGEP 182

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225
           H   F V  EI+ L   ++G   S+R AEQVAAA  L   G+
Sbjct: 183 HCRTFFVECEINLLNEKSRGQGVSRRIAEQVAAAAALIALGV 224


>gi|291539668|emb|CBL12779.1| RNAse III [Roseburia intestinalis XB6B4]
          Length = 228

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/213 (34%), Positives = 111/213 (52%), Gaps = 7/213 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSIS---HSYQES-YERLEFLGDRILGLLIS 56
           MS L+   L+ RIGY F    LL +ALTHSS +   H  + S  ERLEFLGD +L ++ S
Sbjct: 1   MSKLQ--ELQNRIGYTFEKEGLLRQALTHSSYANEKHMKKHSDNERLEFLGDAVLEIVSS 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+ ++    EG+L+    S+V   T +   RE+DL  ++ +     +       SI +
Sbjct: 59  DFLYRNYPDLPEGDLTKLRASIVCEPTLALCTREMDLGDYLLLGKGENQTGGRKRKSILS 118

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D +ES+I A+YLDGG E A  F+ K+     ++  K   D+KT LQE     +  +  Y+
Sbjct: 119 DALESVIGAIYLDGGFEPAKKFIHKFI-LTDIEHKKLFYDSKTILQEVVQGNYKESLHYE 177

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           +    GPDHD +F+V   I       G   +K+
Sbjct: 178 LISEEGPDHDKQFSVEARIGDKVIGSGTGHTKK 210


>gi|90101636|sp|Q4KHT1|RNC_PSEF5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
          Length = 229

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/222 (37%), Positives = 118/222 (53%), Gaps = 6/222 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S LE+++GY+F ++ L+  ALTH S +     + ERLEFLGD IL  +    LF  F  A
Sbjct: 6   SRLERQLGYSFKDQELMLLALTHRSFAG---RNNERLEFLGDAILNFVAGEALFERFPQA 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +EG+LS     LV  ET + +AR  DL  ++R+ S   K       SI AD +E+LI A+
Sbjct: 63  REGQLSRLRARLVKGETLAVLARGFDLGEYLRLGSGELKSGGFRRESILADALEALIGAI 122

Query: 127 YLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD G+E A   V  +      +L      +D KT LQE+  ++    P Y+V    G  
Sbjct: 123 YLDAGMETARDRVLSWLASEFESLTLVDTNKDPKTRLQEFLQSRACELPRYEVVDIQGEP 182

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225
           H   F V  E++ L   ++G   S+R AEQVAAA  L   G+
Sbjct: 183 HCRTFFVECEVTLLNEKSRGQGVSRRIAEQVAAAAALIALGV 224


>gi|295109853|emb|CBL23806.1| RNAse III [Ruminococcus obeum A2-162]
          Length = 223

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/187 (39%), Positives = 101/187 (54%), Gaps = 7/187 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
           LE+ IGY F N+ LL++ALTHSS ++  +       ERLEFLGD +L L+ S  L+  F 
Sbjct: 4   LEQIIGYTFQNKKLLKQALTHSSYANEKKLGKLGCNERLEFLGDAVLELISSDFLYRKFS 63

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGEL+ +  SLV   + +  ARE  L  F+ +             SI +D  E+L+ 
Sbjct: 64  QIPEGELTKKRASLVCEPSLAYCAREFGLPEFLLLGKGENMTGGRNRDSIVSDATEALLG 123

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP-EYKVTFRSGP 183
           A+YLDGG   A  FV  +     ++  +   D+KT LQE    K G+ P EY +T   GP
Sbjct: 124 AIYLDGGFSNAKKFVLNFI-LNDIEHKQLFYDSKTILQELVQEK-GLQPIEYVLTGEDGP 181

Query: 184 DHDPRFT 190
           DHD RFT
Sbjct: 182 DHDKRFT 188


>gi|270265300|ref|ZP_06193561.1| ribonuclease 3 [Serratia odorifera 4Rx13]
 gi|270040704|gb|EFA13807.1| ribonuclease 3 [Serratia odorifera 4Rx13]
          Length = 226

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 122/225 (54%), Gaps = 6/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F  + LL +ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFQQQELLLQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSDIQNVERLILDWYRSRLDEISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222
              G  HD  FT+  ++SGL+ P  G   S+R AEQ AA + LK+
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQALKK 222


>gi|50122200|ref|YP_051367.1| ribonuclease III [Pectobacterium atrosepticum SCRI1043]
 gi|81644286|sp|Q6D219|RNC_ERWCT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|49612726|emb|CAG76176.1| ribonuclease III [Pectobacterium atrosepticum SCRI1043]
          Length = 226

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 119/225 (52%), Gaps = 6/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F    LL +ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 1   MNPILINRLQRKLGYTFQQYELLLQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  DRFPKVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I      +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGIFLDSDILNIERLILNWYQTRLDEISPGDKQKDPKTRLQEFLQGRHLPLPTYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKR 222
              G  HD  FT+  ++SG + +  G   S+R AEQ AA + LK+
Sbjct: 178 QVRGEAHDQEFTIHCQVSGFSESVIGTGSSRRKAEQAAAEQALKK 222


>gi|15595967|ref|NP_249461.1| ribonuclease III [Pseudomonas aeruginosa PAO1]
 gi|107100231|ref|ZP_01364149.1| hypothetical protein PaerPA_01001254 [Pseudomonas aeruginosa PACS2]
 gi|116048686|ref|YP_792514.1| ribonuclease III [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218893287|ref|YP_002442156.1| ribonuclease III [Pseudomonas aeruginosa LESB58]
 gi|254239132|ref|ZP_04932455.1| ribonuclease III [Pseudomonas aeruginosa C3719]
 gi|254245025|ref|ZP_04938347.1| ribonuclease III [Pseudomonas aeruginosa 2192]
 gi|296390880|ref|ZP_06880355.1| ribonuclease III [Pseudomonas aeruginosa PAb1]
 gi|313105592|ref|ZP_07791858.1| ribonuclease III [Pseudomonas aeruginosa 39016]
 gi|7531195|sp|Q9XCX9|RNC_PSEAE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|122257792|sp|Q02HS2|RNC_PSEAB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226735378|sp|B7UYX2|RNC_PSEA8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|5114183|gb|AAD40229.1|AF123492_1 RNase III [Pseudomonas aeruginosa]
 gi|9946659|gb|AAG04159.1|AE004512_2 ribonuclease III [Pseudomonas aeruginosa PAO1]
 gi|115583907|gb|ABJ09922.1| ribonuclease III [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126171063|gb|EAZ56574.1| ribonuclease III [Pseudomonas aeruginosa C3719]
 gi|126198403|gb|EAZ62466.1| ribonuclease III [Pseudomonas aeruginosa 2192]
 gi|218773515|emb|CAW29327.1| ribonuclease III [Pseudomonas aeruginosa LESB58]
 gi|310878360|gb|EFQ36954.1| ribonuclease III [Pseudomonas aeruginosa 39016]
          Length = 229

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/220 (37%), Positives = 119/220 (54%), Gaps = 6/220 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE+++GY F +R L+  ALTH S +     + ERLEFLGD IL  +I   LF+HF  A+E
Sbjct: 8   LERKLGYTFKDRDLMVLALTHRSYA---GRNNERLEFLGDAILNFVIGEALFHHFPQARE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS     LV  ET + +AR  ++  ++R+ S   K       SI AD +E+LI A+YL
Sbjct: 65  GQLSRLRARLVKGETLALLARGFEVGDYLRLGSGELKSGGFRRESILADAMEALIGAIYL 124

Query: 129 DGGIEVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D G++ A   +  +   + R L      +D KT LQE+  ++    P Y+V    G  H 
Sbjct: 125 DTGMDSARERIIAWLGPQLRELTPVDTNKDPKTRLQEFLQSRGCDLPRYEVVDIQGEPHC 184

Query: 187 PRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKREGI 225
             F V  E++ L+    G   S+R AEQVAAA  L   G+
Sbjct: 185 RTFFVDCEVALLSDKTHGHGGSRRIAEQVAAAAALVALGV 224


>gi|154505348|ref|ZP_02042086.1| hypothetical protein RUMGNA_02863 [Ruminococcus gnavus ATCC 29149]
 gi|153794391|gb|EDN76811.1| hypothetical protein RUMGNA_02863 [Ruminococcus gnavus ATCC 29149]
          Length = 252

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/208 (37%), Positives = 111/208 (53%), Gaps = 5/208 (2%)

Query: 13  IGYAFANRSLLEKALTHSSISH-SYQESY---ERLEFLGDRILGLLISTLLFNHFDSAKE 68
           IGY F + SLLE+A+ HSS ++  + E Y   ERLEFLGD +L L+ S  LF       E
Sbjct: 35  IGYEFQDFSLLEQAMMHSSYTNEKHLEKYHCNERLEFLGDAVLELVSSEFLFLESPKVSE 94

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+L+    S+V   + +  ARE++L S++ +             S+ +D +E+LI A+YL
Sbjct: 95  GKLTKTRASMVCEPSLAFCAREIELGSYLLLGKGEEATGGRQRPSVTSDAMEALIGAIYL 154

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           DGG   A  F+ ++     L++ K   D+KT LQE   A       Y +    GPDH+  
Sbjct: 155 DGGFTNAKEFIHRFI-LTDLENKKLFYDSKTILQEIVQADMEEGISYHLIKEEGPDHNKS 213

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           FTV V+I       G   +K+AAEQ AA
Sbjct: 214 FTVEVKIGETVYGTGSGRTKKAAEQEAA 241


>gi|330957807|gb|EGH58067.1| ribonuclease III [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 229

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/222 (38%), Positives = 117/222 (52%), Gaps = 6/222 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S LE+++GY F ++ L+  ALTH S +     + ERLEFLGD IL  +    LF  F  A
Sbjct: 6   SRLERQLGYTFKDQELMVLALTHRSFAG---RNNERLEFLGDAILNFVAGEALFERFPQA 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +EG+LS     LV  ET + +AR  DL  ++R+ S   K       SI AD +E+LI A+
Sbjct: 63  REGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADALEALIGAI 122

Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD G+E A   V  +      +L      +D KT LQE+  ++    P Y+V    G  
Sbjct: 123 YLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACDLPRYEVVDIQGEP 182

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225
           H   F V  EI+ L   ++G   S+R AEQVAAA  L   G+
Sbjct: 183 HCRTFFVECEINLLNEKSRGQGVSRRIAEQVAAAAALIALGV 224


>gi|300087535|ref|YP_003758057.1| ribonuclease III [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527268|gb|ADJ25736.1| ribonuclease III [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 234

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/230 (33%), Positives = 119/230 (51%), Gaps = 22/230 (9%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSS---------ISHSYQESYERLEFLGDRILGLLIS 56
           Y  ++ R+G  FAN ++LE AL HSS         ISH+     ERLEFLGD +LG+ I+
Sbjct: 4   YEEIQARLGVRFANPAILETALIHSSFVNETADQSISHN-----ERLEFLGDAVLGMWIA 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  F    EG L+   + LV  ET + +A EL L   + +    R ++ S      A
Sbjct: 59  ERLFRDFPDEPEGTLTRYRSLLVRRETLAFIADELQLGEALYLG---RGEIRSGGRRKPA 115

Query: 117 DV---VESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGV 171
           ++   +E++IAA+YLD G +  G  +D+ +++    L       D+K+ LQE    ++  
Sbjct: 116 NLSRALEAVIAAVYLDRGYDTTGQVIDRLFERHFADLPGMAAAADSKSHLQEIVQGRYHT 175

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            PEY++   +GPD+   FT  V ++G     G    K+ AE  AA E L+
Sbjct: 176 PPEYRIIEENGPDNAQSFTAEVIVNGQVRGTGRGSRKKDAETAAAQEALE 225


>gi|225847889|ref|YP_002728052.1| ribonuclease III [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644365|gb|ACN99415.1| ribonuclease III [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 238

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 116/226 (51%), Gaps = 9/226 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFN 61
           R   LEK + Y F ++SLL  A+TH S    Y    + YE LEFLGD +L L++S +L  
Sbjct: 11  RVENLEKLLDYNFKDKSLLLAAITHRSFVAEYPVKLKDYEVLEFLGDSVLSLIVSEILIK 70

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F  A+EG+LS   +++VS    S++A+ L+L  F+ +S   +    S   S+  DV E+
Sbjct: 71  QFPDAREGDLSQLRSAIVSEAYLSKLAKLLNLGQFVLISKGEKSQKGSERDSLLCDVFEA 130

Query: 122 LIAALYLDG--GIEVAGTFVDKYWKQRAL---KSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           +  A+Y+D    I+      +K +K++ L   K+    RD K+ LQ      +G  P+Y+
Sbjct: 131 VFGAIYIDTDYNIDTPRNVFNKLFKEKLLQDIKTENIPRDYKSLLQIETQKLYGKIPKYR 190

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +    GP+HD  F V  EI  +         K A  Q AA E  ++
Sbjct: 191 LIHSEGPEHDKVFVVECEIEKIKTTGKGKSKKEAETQ-AAKEAFRK 235


>gi|291613749|ref|YP_003523906.1| ribonuclease III [Sideroxydans lithotrophicus ES-1]
 gi|291583861|gb|ADE11519.1| ribonuclease III [Sideroxydans lithotrophicus ES-1]
          Length = 224

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/219 (36%), Positives = 119/219 (54%), Gaps = 12/219 (5%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++++ L KR+GY F    LL++ALTH S S ++ E   RLEFLGD +L   I+  L++ +
Sbjct: 1   MKHAALCKRLGYQFLQPQLLQRALTHRSYSAAHNE---RLEFLGDSVLNCAIAKYLYDTY 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS   ++LV+ +T + +A++L+L   + +    RK       SI AD +E+L 
Sbjct: 58  PDLPEGDLSRLRSNLVNQQTLAILAQQLNLGEQLLLGEGERKSAGFRRPSILADALEALF 117

Query: 124 AALYLDGGIEVA-----GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
            A+ LD G   A     G +V  +  Q  LK+    +DAKT LQE   ++    P+Y V 
Sbjct: 118 GAVLLDAGFMAAEKVVLGLYV-PFIVQTDLKT--LGKDAKTLLQEHLQSRKLALPQYHVA 174

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAA 216
              G  H   F V  EI+ L   +QG   S+R AEQ+AA
Sbjct: 175 EIKGEAHAQTFVVTCEIAQLGLVSQGEGTSRRIAEQIAA 213


>gi|330964520|gb|EGH64780.1| ribonuclease III [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 227

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/217 (38%), Positives = 115/217 (52%), Gaps = 6/217 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S LE+++GY F ++ L+  ALTH S +     + ERLEFLGD IL  +    LF  F  A
Sbjct: 6   SRLERQLGYTFKDQELMILALTHRSFAG---RNNERLEFLGDAILNFVAGEALFERFPQA 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +EG+LS     LV  ET + +AR  DL  ++R+ S   K       SI AD +E+LI A+
Sbjct: 63  REGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADALEALIGAI 122

Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD G+E A   V  +      +L      +D KT LQE+  ++    P Y+V    G  
Sbjct: 123 YLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACDLPRYEVVDIQGEP 182

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVL 220
           H   F V  EI+ L   ++G   S+R AEQVAAA  L
Sbjct: 183 HCRTFFVECEINLLNEKSRGQGVSRRIAEQVAAAAAL 219


>gi|120609884|ref|YP_969562.1| ribonuclease III [Acidovorax citrulli AAC00-1]
 gi|120588348|gb|ABM31788.1| RNAse III [Acidovorax citrulli AAC00-1]
          Length = 228

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/217 (35%), Positives = 112/217 (51%), Gaps = 8/217 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M +   S L+ R+ + F++ SLL++A TH S S  + E   RLEFLGD +L L +S+LL+
Sbjct: 1   MVSPSLSALQDRLQHVFSDPSLLQRATTHRSFSADHNE---RLEFLGDSVLNLAVSSLLY 57

Query: 61  NHFDSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
                  EG+LS VR N LV  E    +A  L L   +R+     K       SI AD +
Sbjct: 58  QRLRDLPEGDLSRVRAN-LVRQEALHSLALGLQLPQVLRLGEGETKSGGKQRPSILADAL 116

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E+LI A+YLD G + A   V + ++   +  +     +DAKT LQEW   +    P+Y+V
Sbjct: 117 EALIGAVYLDAGYQCAEALVHRLYQDVEINPRMPAAEKDAKTALQEWLQGRKMKLPQYRV 176

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQ 213
               G  H   F V  +I  L   + G+  S+RA EQ
Sbjct: 177 VATVGAAHRQTFDVECDIPELGLTERGIGGSRRAGEQ 213


>gi|254519218|ref|ZP_05131274.1| ribonuclease III [Clostridium sp. 7_2_43FAA]
 gi|226912967|gb|EEH98168.1| ribonuclease III [Clostridium sp. 7_2_43FAA]
          Length = 242

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 115/225 (51%), Gaps = 4/225 (1%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTL 58
           M+      +E  IG  F    LL+ ALTHSS +  H  QE  ER EFLGD IL L I+  
Sbjct: 11  MAKFNIKEVEDSIGLTFNEPKLLKTALTHSSYANQHKDQEYNERFEFLGDSILQLCITEY 70

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF ++ +  EGEL+   + +V   +  ++ ++L+L  FIR+S            SI AD 
Sbjct: 71  LFLNYKNKSEGELTKIRSLIVCENSLYEIGKKLNLGYFIRISRGEELTGGRERVSIIADA 130

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYK 176
           VE+L+A +YLD G+E    ++  ++K+   K  +     D KT+LQE       V+  Y+
Sbjct: 131 VEALLAGIYLDKGLEFVKDYIIGHFKEIIDKAINNDIVLDYKTKLQEEMQKSGEVSIIYE 190

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +    GP H  +F   V I      +G   SK+ +EQ AA E L+
Sbjct: 191 LLKYEGPPHRRKFFTSVLIEDRELGKGEGYSKKESEQNAAKEALR 235


>gi|49081844|gb|AAT50322.1| PA0770 [synthetic construct]
          Length = 230

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/220 (37%), Positives = 119/220 (54%), Gaps = 6/220 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE+++GY F +R L+  ALTH S +     + ERLEFLGD IL  +I   LF+HF  A+E
Sbjct: 8   LERKLGYTFKDRDLMVLALTHRSYA---GRNNERLEFLGDAILNFVIGEALFHHFPQARE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS     LV  ET + +AR  ++  ++R+ S   K       SI AD +E+LI A+YL
Sbjct: 65  GQLSRLRARLVKGETLALLARGFEVGDYLRLGSGELKSGGFRRESILADAMEALIGAIYL 124

Query: 129 DGGIEVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D G++ A   +  +   + R L      +D KT LQE+  ++    P Y+V    G  H 
Sbjct: 125 DTGMDSARERIIAWLGPQLRELTPVDTNKDPKTRLQEFLQSRGCDLPRYEVVDIQGEPHC 184

Query: 187 PRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKREGI 225
             F V  E++ L+    G   S+R AEQVAAA  L   G+
Sbjct: 185 RTFFVDCEVALLSDKTHGHGGSRRIAEQVAAAAALVALGV 224


>gi|240146505|ref|ZP_04745106.1| ribonuclease III [Roseburia intestinalis L1-82]
 gi|257201361|gb|EEU99645.1| ribonuclease III [Roseburia intestinalis L1-82]
 gi|291535139|emb|CBL08251.1| RNAse III [Roseburia intestinalis M50/1]
          Length = 228

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/213 (34%), Positives = 111/213 (52%), Gaps = 7/213 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSIS---HSYQES-YERLEFLGDRILGLLIS 56
           MS L+   L+ RIGY F    LL +ALTHSS +   H  + S  ERLEFLGD +L ++ S
Sbjct: 1   MSKLQ--ELQNRIGYTFEKEGLLRQALTHSSYANEKHMKKHSDNERLEFLGDAVLEIVSS 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+ ++    EG+L+    S+V   T +   RE+DL  ++ +     +       SI +
Sbjct: 59  DFLYRNYPDLPEGDLTKLRASIVCEPTLALCTREMDLGDYLLLGKGENQTGGRKRKSILS 118

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D +ES+I A+YLDGG E A  F+ K+     ++  K   D+KT LQE     +  +  Y+
Sbjct: 119 DALESVIGAIYLDGGFEPAKKFIHKFI-LTDIEHKKLFYDSKTILQEVVQGNYKESLHYE 177

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           +    GPDHD +F+V   I       G   +K+
Sbjct: 178 LISEEGPDHDKQFSVEARIGDKVIGAGTGHTKK 210


>gi|229815433|ref|ZP_04445765.1| hypothetical protein COLINT_02481 [Collinsella intestinalis DSM
           13280]
 gi|229808966|gb|EEP44736.1| hypothetical protein COLINT_02481 [Collinsella intestinalis DSM
           13280]
          Length = 241

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/217 (37%), Positives = 112/217 (51%), Gaps = 3/217 (1%)

Query: 14  GYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71
           G+ F +  LL  A+TH S         SYERLEFLGD ILG +++  LF  + +  EG+L
Sbjct: 15  GHEFTDVQLLRSAITHPSAVEGEPVSASYERLEFLGDSILGSIVALSLFKTYGAFDEGKL 74

Query: 72  SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131
           +    SLVS  T S+V  EL +   I + +  +      M S   +V E+LI ALYLDGG
Sbjct: 75  TRLKVSLVSGATLSEVGLELGIDKIIILGASEQGTGARGMHSALENVYEALIGALYLDGG 134

Query: 132 IEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
            +VA  F+ +  K   A +  +   + K+ LQE   +     P YKV    GP H P FT
Sbjct: 135 WDVAEAFITRTLKPHLADERAEHPSNPKSYLQECVQSDRMDPPAYKVIGEDGPAHQPTFT 194

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
            V  + G+   +G   SK+ AE  AA + L+R G  T
Sbjct: 195 AVALVDGIRRGRGTGSSKKEAEAAAALDALERMGYTT 231


>gi|28871359|ref|NP_793978.1| ribonuclease III [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213971119|ref|ZP_03399238.1| ribonuclease III [Pseudomonas syringae pv. tomato T1]
 gi|237798713|ref|ZP_04587174.1| ribonuclease III [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|237806146|ref|ZP_04592850.1| ribonuclease III [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|301381864|ref|ZP_07230282.1| ribonuclease III [Pseudomonas syringae pv. tomato Max13]
 gi|302063246|ref|ZP_07254787.1| ribonuclease III [Pseudomonas syringae pv. tomato K40]
 gi|302132832|ref|ZP_07258822.1| ribonuclease III [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|37999381|sp|Q87XG1|RNC_PSESM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|28854610|gb|AAO57673.1| ribonuclease III [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213924108|gb|EEB57684.1| ribonuclease III [Pseudomonas syringae pv. tomato T1]
 gi|331015601|gb|EGH95657.1| ribonuclease III [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
 gi|331021566|gb|EGI01623.1| ribonuclease III [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331027259|gb|EGI07314.1| ribonuclease III [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 229

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/222 (38%), Positives = 117/222 (52%), Gaps = 6/222 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S LE+++GY F ++ L+  ALTH S +     + ERLEFLGD IL  +    LF  F  A
Sbjct: 6   SRLERQLGYTFKDQELMILALTHRSFAG---RNNERLEFLGDAILNFVAGEALFERFPQA 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +EG+LS     LV  ET + +AR  DL  ++R+ S   K       SI AD +E+LI A+
Sbjct: 63  REGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADALEALIGAI 122

Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD G+E A   V  +      +L      +D KT LQE+  ++    P Y+V    G  
Sbjct: 123 YLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACDLPRYEVVDIQGEP 182

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225
           H   F V  EI+ L   ++G   S+R AEQVAAA  L   G+
Sbjct: 183 HCRTFFVECEINLLNEKSRGQGVSRRIAEQVAAAAALIALGV 224


>gi|71737399|ref|YP_276084.1| ribonuclease III [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|90101635|sp|Q48EV3|RNC_PSE14 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|71557952|gb|AAZ37163.1| ribonuclease III [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 229

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/222 (38%), Positives = 117/222 (52%), Gaps = 6/222 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S LE+++GY F ++ L+  ALTH S +     + ERLEFLGD IL  +    LF  F  A
Sbjct: 6   SRLERQLGYTFKDQELMVLALTHRSFAGR---NNERLEFLGDAILNFVAGEALFERFPQA 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +EG+LS     LV  ET + +AR  DL  ++R+ S   K       SI AD +E+LI A+
Sbjct: 63  REGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADALEALIGAI 122

Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD G+E A   V  +      +L      +D KT LQE+  ++    P Y+V    G  
Sbjct: 123 YLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACELPRYEVVDIHGEP 182

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225
           H   F V  EI+ L   ++G   S+R AEQVAAA  L   G+
Sbjct: 183 HCRTFFVECEINLLNEKSRGQGVSRRIAEQVAAAAALIALGV 224


>gi|261820519|ref|YP_003258625.1| ribonuclease III [Pectobacterium wasabiae WPP163]
 gi|261604532|gb|ACX87018.1| ribonuclease III [Pectobacterium wasabiae WPP163]
          Length = 226

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 119/225 (52%), Gaps = 6/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F    LL +ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 1   MNPILINRLQRKLGYTFQQYELLLQALTHRSASSKHNE---RLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPKVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I      +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGIFLDSDILNIERLILNWYQTRLDEISPGDKQKDPKTRLQEFLQGRHLPLPTYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKR 222
              G  HD  FT+  ++SG + +  G   S+R AEQ AA + LK+
Sbjct: 178 QVRGEAHDQEFTIHCQVSGFSESVIGTGSSRRKAEQAAAEQALKK 222


>gi|284032688|ref|YP_003382619.1| ribonuclease III [Kribbella flavida DSM 17836]
 gi|283811981|gb|ADB33820.1| ribonuclease III [Kribbella flavida DSM 17836]
          Length = 249

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/216 (37%), Positives = 113/216 (52%), Gaps = 8/216 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
           Y+ L +R+G + A+  LLE A TH S ++      + ERLEFLGD +LG++++  LF + 
Sbjct: 16  YAELNQRLGVSLADE-LLEHAFTHRSFAYENGGLPTNERLEFLGDSVLGVIVTESLFRNH 74

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG L+    ++V+    + VAR+L L  ++R+            +SI AD VE+LI
Sbjct: 75  PDLSEGRLAKLRAAVVNMRALAGVARDLKLGKYLRLGRGEEATGGRDKSSILADCVEALI 134

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGV-TPEYKVTFR 180
            A+YLD G EVAG  V   +      S +     D KT LQE   A+ GV  PEY V   
Sbjct: 135 GAVYLDRGFEVAGRVVHTLFDDLMESSARLGAGLDWKTSLQELV-AQLGVGVPEY-VIAE 192

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           SGPDH   F   V I       G+  SK+ AEQ AA
Sbjct: 193 SGPDHAKTFEARVRIGSDTYGHGIGRSKKEAEQQAA 228


>gi|307610570|emb|CBX00158.1| hypothetical protein LPW_19031 [Legionella pneumophila 130b]
          Length = 206

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/204 (36%), Positives = 112/204 (54%), Gaps = 8/204 (3%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           L++ALTH S      ++YER EFLGD IL  +I+  LFN F    EG+LS   + LV  E
Sbjct: 4   LKQALTHCSAG---SDNYERFEFLGDSILSFVIANELFNRFPLHSEGQLSRLRSFLVKGE 60

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
             +++ARE+ L  ++ +     +      TSI AD +E+++AA+YLDGG+  A   +   
Sbjct: 61  MLAEIAREIGLGDYLFLGQGELRSGGFRRTSILADALEAILAAIYLDGGMTAAKQIILML 120

Query: 143 WKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
           +  R L         +DAKT+LQE+  A     PEY +T   G +H   F V   I G++
Sbjct: 121 YSSR-LDDPDLNHCLKDAKTQLQEFLQASKFALPEYVLTKVEGDEHAQIFHVTCTIEGVS 179

Query: 200 P-AQGMDCSKRAAEQVAAAEVLKR 222
             A G   ++R AEQ+AA  +L++
Sbjct: 180 QVAYGTGPNRRKAEQLAAKAMLEQ 203


>gi|167035367|ref|YP_001670598.1| ribonuclease III [Pseudomonas putida GB-1]
 gi|189043333|sp|B0KV27|RNC_PSEPG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|166861855|gb|ABZ00263.1| Ribonuclease III [Pseudomonas putida GB-1]
          Length = 229

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/223 (36%), Positives = 116/223 (52%), Gaps = 12/223 (5%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE+++GY F N+  +  ALTH S +     + ERLEFLGD IL  +    LF  F  A+E
Sbjct: 8   LERKLGYTFKNQDQMLLALTHRSYAG---RNNERLEFLGDAILNFVAGEALFERFPQARE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS     LV  ET +++AR  DL  ++R+ S   K       SI AD +E+LI A+YL
Sbjct: 65  GQLSRLRARLVKGETLARLARGFDLGEYLRLGSGELKSGGFRRESILADALEALIGAIYL 124

Query: 129 DGGIEVAGTFV-----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           D  ++ A   V     D++     + + K   D KT LQE+  ++    P Y+V    G 
Sbjct: 125 DADMDTARERVLAWLADEFEGLTLVDTNK---DPKTRLQEFLQSRSCELPRYEVVDIQGE 181

Query: 184 DHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225
            H   F V  E+  L   ++G   S+R AEQVAAA  L   G+
Sbjct: 182 PHCRTFFVECEVVLLNNKSRGQGVSRRIAEQVAAASALIALGV 224


>gi|78046932|ref|YP_363107.1| ribonuclease III [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|90101655|sp|Q3BVV6|RNC_XANC5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|78035362|emb|CAJ23007.1| ribonuclease III [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 226

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/211 (36%), Positives = 110/211 (52%), Gaps = 6/211 (2%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           IG+AFA+ +LL +AL H S    + E   RLEFLGD I+ LLI+  L+  +  A EG L+
Sbjct: 12  IGHAFADPALLARALRHRSAGTPHNE---RLEFLGDGIVNLLIAEALYQRWPKADEGALT 68

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                LV     + + R L+L   + +     K       SI AD VE+++AA+YLD G 
Sbjct: 69  RARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDCGF 128

Query: 133 EVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           E     V  +++    AL  GK  +D KT LQEW  A+    P Y +   SG +H  +F 
Sbjct: 129 ERCRAVVLPWFEASLAALPVGKAEKDPKTRLQEWLQARQLPLPTYALISESGDEHAKQFH 188

Query: 191 VVVEI-SGLAPAQGMDCSKRAAEQVAAAEVL 220
           V   +   +A A+G   S+R AEQ AA  V+
Sbjct: 189 VACILEQPVARAEGQGTSRRLAEQQAATLVI 219


>gi|21242078|ref|NP_641660.1| ribonuclease III [Xanthomonas axonopodis pv. citri str. 306]
 gi|24212270|sp|Q8PMV0|RNC_XANAC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|21107485|gb|AAM36196.1| ribonuclease III [Xanthomonas axonopodis pv. citri str. 306]
          Length = 226

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/211 (36%), Positives = 111/211 (52%), Gaps = 6/211 (2%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           IG+AFA+ +LL +AL H S    + E   RLEFLGD I+ LLI+  L++ +  A EG L+
Sbjct: 12  IGHAFADPALLAQALRHRSAGTPHNE---RLEFLGDGIVNLLIAEALYHRWPKADEGALT 68

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                LV     + + R L+L   + +     K       SI AD VE+++AA+YLD G 
Sbjct: 69  RARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDCGF 128

Query: 133 EVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           E     V  +++    AL  GK  +D KT LQEW  A+    P Y +   SG +H  +F 
Sbjct: 129 ERCRAVVLPWFEASLAALPVGKAEKDPKTRLQEWLQARQLPLPTYALISESGDEHAKQFH 188

Query: 191 VVVEI-SGLAPAQGMDCSKRAAEQVAAAEVL 220
           V   +   +A A+G   S+R AEQ AA  V+
Sbjct: 189 VACILEQPVARAEGQGTSRRLAEQQAATLVI 219


>gi|159898112|ref|YP_001544359.1| ribonuclease III [Herpetosiphon aurantiacus ATCC 23779]
 gi|159891151|gb|ABX04231.1| Ribonuclease III [Herpetosiphon aurantiacus ATCC 23779]
          Length = 234

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 65/191 (34%), Positives = 102/191 (53%), Gaps = 5/191 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLFNH 62
           + L+  +GY F + + L  A+ H S  H +     ES ERLEFLGD +L  +  + LF+ 
Sbjct: 4   NKLQAELGYTFNDLNFLRAAMLHRSYVHEHPEAGSESNERLEFLGDALLNFICGSFLFHE 63

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG+L+     LV   T + +AR  +L S++++S    +       ++ AD  E+L
Sbjct: 64  FPELGEGDLTKTRAMLVQTRTLAGLARRFNLGSYVQISRGEERAKARERDNLLADAFEAL 123

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +AA+ LDGG E A  FV    K     SG   +D KT+LQ++   +  +TP Y+    +G
Sbjct: 124 LAAIALDGGWEAARNFVLPLLKS-VKASGVQNQDYKTDLQQYVQGRINLTPSYREVNVTG 182

Query: 183 PDHDPRFTVVV 193
           PDH+  +T+ V
Sbjct: 183 PDHERTWTIEV 193


>gi|322385039|ref|ZP_08058689.1| ribonuclease III [Streptococcus cristatus ATCC 51100]
 gi|321270949|gb|EFX53859.1| ribonuclease III [Streptococcus cristatus ATCC 51100]
          Length = 229

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/229 (33%), Positives = 118/229 (51%), Gaps = 8/229 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + LE + G  F + SLLE A TH+S ++ ++       ERLEFLGD +L L+IS
Sbjct: 1   MEQLKDALLE-QFGLVFEDSSLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS   + +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYKKYPKKPEGDLSKLRSMIVREESLAGFARDCQFDQFIKLGRGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D+ E+ + AL LD  +E    F+ +    + +++G F +  D KT+LQE       V   
Sbjct: 120 DLFEAFLGALLLDKDVETVKAFIYQVMIPK-VEAGDFEQVTDYKTKLQELLQVNGDVEIV 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           Y+VT  +GP H   F V V I+G    QG   SK+ AEQ AA +  ++E
Sbjct: 179 YQVTDETGPAHAKNFAVAVLINGQKAGQGQGRSKKLAEQEAAKDAFEKE 227


>gi|226940389|ref|YP_002795463.1| ribonuclease III [Laribacter hongkongensis HLHK9]
 gi|226715316|gb|ACO74454.1| Rnc [Laribacter hongkongensis HLHK9]
          Length = 238

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/216 (36%), Positives = 116/216 (53%), Gaps = 6/216 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L + IG+ F + +LL++ALTH S     Q + ER EF+GD IL   I+ +LF+ F    E
Sbjct: 10  LMQHIGHLFTSPALLKEALTHRSYG---QPNNERFEFVGDGILNYTIARMLFDAFPELSE 66

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    +LV+  T +++AREL L   + +    RK       SI AD +E++ AA+ L
Sbjct: 67  GQLSRLRANLVNQATLAEIARELTLGDCLFLGDGERKSGGHDRPSILADAMEAIFAAVCL 126

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D    VA   V + +  R   +   +  +DAKT LQE   A+    P Y++  +SG  H 
Sbjct: 127 DADFAVAENVVRRLYAARVAGIDLNRQAKDAKTRLQEMLQARRLPLPAYRILNQSGDAHL 186

Query: 187 PRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLK 221
            +F V  +I  L  A  G   S+RAAEQ+AA   ++
Sbjct: 187 SQFEVACDIPQLGLATCGEGSSRRAAEQLAAERAIE 222


>gi|307329834|ref|ZP_07608989.1| ribonuclease III [Streptomyces violaceusniger Tu 4113]
 gi|306884563|gb|EFN15594.1| ribonuclease III [Streptomyces violaceusniger Tu 4113]
          Length = 278

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/212 (34%), Positives = 113/212 (53%), Gaps = 6/212 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           +A  ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L
Sbjct: 19  TASSHTILEGRLGYQLES-ALLVRALTHRSFAYENGGLPTNERLEFLGDSVLGLVVTDTL 77

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +       EG+L+    ++V++   ++V R LDL +FIR+             SI AD +
Sbjct: 78  YRIHPDLPEGQLAKLRAAVVNSRALAEVGRGLDLGAFIRLGRGEEGTGGRDKASILADTL 137

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD G++ A   V + +     KS       D KT LQE    +    PEY V
Sbjct: 138 EAVIGAVYLDQGLDAAAELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLV 197

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           +  +GPDH+  FT    + G+A   G   SK+
Sbjct: 198 S-ETGPDHEKTFTAAARVGGVAYGTGTGRSKK 228


>gi|255321781|ref|ZP_05362936.1| ribonuclease III [Campylobacter showae RM3277]
 gi|255301261|gb|EET80523.1| ribonuclease III [Campylobacter showae RM3277]
          Length = 222

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/216 (33%), Positives = 112/216 (51%), Gaps = 6/216 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            LE+++GY F +  LL+ ALTH S+        ERLEFLGD ++ L+I   LF+ F    
Sbjct: 3   NLEEKLGYKFKDEKLLKTALTHKSVKGGANN--ERLEFLGDAVMDLVIGDYLFHKFSRLS 60

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG+LS    +LV+ ++ +++A+ L+L   I +S     +      SI +D  E+L+ A+Y
Sbjct: 61  EGDLSKLRAALVNEKSFAELAKYLNLGQLINISPAEEHNGGRAKASILSDAFEALMGAIY 120

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           L+ G +       K + +R      F R   D KT LQE   A+F   P+Y +    GPD
Sbjct: 121 LESGFDAVRAASLKAF-ERCYPDINFDRMVKDYKTALQELTQARFAQIPKYVLVGSKGPD 179

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           H   F + + ++    ++    SK+ AEQ AA   L
Sbjct: 180 HKKEFEIALMLNEREISRAAGKSKKEAEQKAAKTAL 215


>gi|163856074|ref|YP_001630372.1| ribonuclease III [Bordetella petrii DSM 12804]
 gi|229564350|sp|A9IIJ2|RNC_BORPD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|163259802|emb|CAP42103.1| Ribonuclease III [Bordetella petrii]
          Length = 252

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/220 (34%), Positives = 117/220 (53%), Gaps = 14/220 (6%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  +TLE R+ + F N +LLE+ALTH S  HS + + ERLEFLGD +L  +++ +LF  F
Sbjct: 1   MSLATLETRLDHRFGNAALLEQALTHRS--HSARHN-ERLEFLGDSVLNFVVAAMLFERF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV   + + + + L+L+ ++R+     K       SI AD VE++ 
Sbjct: 58  PKLDEGDLSRLRANLVKQASLADIGQRLELSQYLRLGEGELKSGGFRRPSILADAVEAIF 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A +LDGG + A   + + ++    ++      +DAKT LQE+   +    P Y V    
Sbjct: 118 GAAFLDGGFDTARKVIVRQYQPVLASVDPKTLGKDAKTLLQEFLQGRKLALPLYTVVATH 177

Query: 182 GPDHDPRFTV-----VVEISGLAPAQGMDCSKRAAEQVAA 216
           G  H  +F V      +EI  +AP      S+RAAEQ AA
Sbjct: 178 GAAHSQQFEVECAIPALEIKVVAPG----ASRRAAEQSAA 213


>gi|91789485|ref|YP_550437.1| ribonuclease III [Polaromonas sp. JS666]
 gi|91698710|gb|ABE45539.1| RNAse III [Polaromonas sp. JS666]
          Length = 233

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/215 (35%), Positives = 112/215 (52%), Gaps = 6/215 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L+KR+ + F+N  LL +ALTH S S  + E   R+EFLGD +L L ++ LL+       E
Sbjct: 14  LQKRLQHEFSNPKLLAQALTHRSFSADHNE---RIEFLGDSVLNLAVAGLLYEQLSELPE 70

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    +LV  +T  ++A  L L   +R+     +       SI AD +E++I A+YL
Sbjct: 71  GDLSRVRANLVKQDTLHKLAVTLGLPEMLRLGEGEARSGGQKRPSILADALEAVIGAVYL 130

Query: 129 DGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D G + A   V + ++   +        +D KTELQEW   +    P Y+V    G  H 
Sbjct: 131 DAGFDKADQLVRRLFRNVEINPQMQAIGKDPKTELQEWLQGRKMNLPIYRVVGTMGAAHK 190

Query: 187 PRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVL 220
             F V  EI+    A+ G+  S+RA EQ AAA +L
Sbjct: 191 QTFDVECEITEYGRAERGIGGSRRAGEQAAAAAML 225


>gi|206901475|ref|YP_002250663.1| ribonuclease III [Dictyoglomus thermophilum H-6-12]
 gi|206740578|gb|ACI19636.1| ribonuclease III [Dictyoglomus thermophilum H-6-12]
          Length = 237

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 117/219 (53%), Gaps = 5/219 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLFNHF 63
           S ++++ G +F N++L+ +ALTH S  H    ++   +RLEFLGD +L ++I+ +LF  +
Sbjct: 18  SKVKEKTGISFDNKNLIIEALTHPSFKHENPHFEYDNQRLEFLGDAVLNMIITEILFQRY 77

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EG L+ +   +V  ET  + A+ L+L   I +     K       SI +D+ E+ I
Sbjct: 78  KEASEGILTQKRIYMVKEETLYKKAKSLNLGDLILLGKGEEKQGGREKISILSDLFEAFI 137

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            ALYLD G E    FV++ +++  ++S +   D K  LQ     K G  P Y VT   GP
Sbjct: 138 GALYLDKGYEFTKNFVERIFREE-IESVEMEIDWKNLLQSQL-MKEGKKPSYIVTREEGP 195

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +H+  F V + I     A+G   +KR AE  AA   L++
Sbjct: 196 EHNKIFYVELWIDNNKIAEGEGKTKREAEIKAAKIALEK 234


>gi|238923872|ref|YP_002937388.1| ribonuclease III [Eubacterium rectale ATCC 33656]
 gi|238875547|gb|ACR75254.1| ribonuclease III [Eubacterium rectale ATCC 33656]
          Length = 237

 Score =  112 bits (280), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/207 (35%), Positives = 113/207 (54%), Gaps = 6/207 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSIS---HSYQES-YERLEFLGDRILGLLISTLLFNH 62
           +  + +IGY F NR LLE+ALTHSS +   H  + S  ERLEFLGD +L ++ S  LF +
Sbjct: 15  NEFQSKIGYTFKNRHLLEQALTHSSYANEKHMKKHSDNERLEFLGDAVLEIVSSEFLFIN 74

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +    EGEL+    S+V   T +   + LDL  ++R+             SI +D +E++
Sbjct: 75  YPQKPEGELTKLRASIVCEPTLALCTKPLDLGKYLRLGRGEDHTGGRKRKSILSDALEAV 134

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           I A+YLDGG   A  FV ++     +++ +   D+KT LQE    +      Y++   SG
Sbjct: 135 IGAIYLDGGFTNAKEFVLRFI-MTDIENKQLFYDSKTILQELIQGRHEQLS-YELIDESG 192

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209
           PDHD +FTV V + G   ++G   +K+
Sbjct: 193 PDHDKQFTVAVLVDGERVSEGEGHTKK 219


>gi|2500553|sp|Q53844|RNC_SPICI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|1143009|gb|AAA84999.1| orfb [Spiroplasma citri]
 gi|110005386|emb|CAK99709.1| putative ribonuclease III protein [Spiroplasma citri]
          Length = 248

 Score =  112 bits (280), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/204 (37%), Positives = 111/204 (54%), Gaps = 6/204 (2%)

Query: 25  KALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           +ALTH+S +  H+   +Y+R+EFLGD IL   IS  LF  F    EGE++   + +V   
Sbjct: 34  EALTHNSYANEHNLSYTYQRMEFLGDAILAKEISLYLFLSFPDKNEGEITNLRSKIVREG 93

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
           T +++ R ++ A F+ +     K        I AD+ ES+IAALYLD G +V  TF++  
Sbjct: 94  TLAELVRRMNWAPFLLLGKGEIKTKGYEKNRILADIYESMIAALYLDLGEDVVRTFINNT 153

Query: 143 WKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVVEISGL 198
             +     G F   RD KTELQE+  A    T EYK+   S P    R  +TVV EI G+
Sbjct: 154 LIRMVSNPGFFDKIRDYKTELQEFLQAGDARTLEYKLIKESQPLEGNRVLYTVVAEIGGI 213

Query: 199 APAQGMDCSKRAAEQVAAAEVLKR 222
              +G   + + AEQ+AA + L++
Sbjct: 214 RYGEGCGYTHKEAEQLAARDALQK 237


>gi|325926994|ref|ZP_08188269.1| RNAse III [Xanthomonas perforans 91-118]
 gi|325928522|ref|ZP_08189710.1| RNAse III [Xanthomonas perforans 91-118]
 gi|325541061|gb|EGD12615.1| RNAse III [Xanthomonas perforans 91-118]
 gi|325542653|gb|EGD14120.1| RNAse III [Xanthomonas perforans 91-118]
          Length = 226

 Score =  112 bits (280), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/211 (36%), Positives = 110/211 (52%), Gaps = 6/211 (2%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           IG+AFA+ +LL +AL H S    + E   RLEFLGD I+ LLI+  L+  +  A EG L+
Sbjct: 12  IGHAFADPALLAQALRHRSAGTPHNE---RLEFLGDGIVNLLIAEALYQRWPKADEGALT 68

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                LV     + + R L+L   + +     K       SI AD VE+++AA+YLD G 
Sbjct: 69  RARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDCGF 128

Query: 133 EVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           E     V  +++    AL  GK  +D KT LQEW  A+    P Y +   SG +H  +F 
Sbjct: 129 ERCRAVVLPWFEASLAALPVGKAEKDPKTRLQEWLQARQLPLPTYALISESGDEHAKQFH 188

Query: 191 VVVEI-SGLAPAQGMDCSKRAAEQVAAAEVL 220
           V   +   +A A+G   S+R AEQ AA  V+
Sbjct: 189 VACILEQPVARAEGQGTSRRLAEQQAATLVI 219


>gi|26988166|ref|NP_743591.1| ribonuclease III [Pseudomonas putida KT2440]
 gi|148549494|ref|YP_001269596.1| ribonuclease III [Pseudomonas putida F1]
 gi|37999409|sp|Q88MY5|RNC_PSEPK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043332|sp|A5W8F2|RNC_PSEP1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|24982900|gb|AAN67055.1|AE016334_4 ribonuclease III [Pseudomonas putida KT2440]
 gi|148513552|gb|ABQ80412.1| RNAse III [Pseudomonas putida F1]
 gi|313500339|gb|ADR61705.1| Rnc [Pseudomonas putida BIRD-1]
          Length = 229

 Score =  112 bits (280), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/223 (36%), Positives = 115/223 (51%), Gaps = 12/223 (5%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE+++GY F N+  +  ALTH S +     + ERLEFLGD IL  +    LF  F  A+E
Sbjct: 8   LERKLGYTFKNQDQMLLALTHRSYAG---RNNERLEFLGDAILNFVAGEALFERFPQARE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS     LV  ET +++AR  DL  ++R+ S   K       SI AD +E+LI A+YL
Sbjct: 65  GQLSRLRARLVKGETLARLARGFDLGDYLRLGSGELKSGGFRRESILADALEALIGAIYL 124

Query: 129 DGGIEVA-----GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           D  ++ A         D++     + + K   D KT LQE+  ++    P Y+V    G 
Sbjct: 125 DADMDTARERILAWLADEFEGLTLVDTNK---DPKTRLQEFLQSRSCELPRYEVVDIQGE 181

Query: 184 DHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225
            H   F V  E+  L   ++G   S+R AEQVAAA  L   G+
Sbjct: 182 PHCRTFFVECEVVLLNNKSRGQGVSRRIAEQVAAASALIALGV 224


>gi|325696125|gb|EGD38016.1| ribonuclease III [Streptococcus sanguinis SK160]
          Length = 232

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/229 (33%), Positives = 118/229 (51%), Gaps = 8/229 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + LE+     FA+ +LLE A TH+S ++ ++       ERLEFLGD +L L+IS
Sbjct: 1   MENLKKALLEQ-FDLVFADETLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS   + +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYTKYPKRPEGDLSKLRSMIVREESLAGFARDCQFDHFIKLGRGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D+ E+ + AL LD G+E   +F+ +    + +++G F R  D KT+LQE       V   
Sbjct: 120 DLFEAFLGALLLDKGVEAVKSFLYQVMIPK-VEAGDFERVTDYKTKLQELLQINGDVEIA 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           Y+V   +GP H   F V V I+G    QG   SK+ AEQ AA    ++E
Sbjct: 179 YQVVSETGPAHAKNFEVAVLINGRKSGQGQGRSKKLAEQEAAKNAFEKE 227


>gi|291524528|emb|CBK90115.1| RNAse III [Eubacterium rectale DSM 17629]
 gi|291527954|emb|CBK93540.1| RNAse III [Eubacterium rectale M104/1]
          Length = 227

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/207 (35%), Positives = 113/207 (54%), Gaps = 6/207 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSIS---HSYQES-YERLEFLGDRILGLLISTLLFNH 62
           +  + +IGY F NR LLE+ALTHSS +   H  + S  ERLEFLGD +L ++ S  LF +
Sbjct: 5   NEFQSKIGYTFKNRHLLEQALTHSSYANEKHMKKHSDNERLEFLGDAVLEIVSSEFLFIN 64

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +    EGEL+    S+V   T +   + LDL  ++R+             SI +D +E++
Sbjct: 65  YPQKPEGELTKLRASIVCEPTLALCTKPLDLGKYLRLGRGEDHTGGRKRKSILSDALEAV 124

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           I A+YLDGG   A  FV ++     +++ +   D+KT LQE    +      Y++   SG
Sbjct: 125 IGAIYLDGGFTNAKEFVLRFI-MTDIENKQLFYDSKTILQELIQGRHEQLS-YELIDESG 182

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209
           PDHD +FTV V + G   ++G   +K+
Sbjct: 183 PDHDKQFTVAVLVDGERVSEGEGHTKK 209


>gi|330446941|ref|ZP_08310592.1| ribonuclease III [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328491132|dbj|GAA05089.1| ribonuclease III [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 224

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/204 (34%), Positives = 109/204 (53%), Gaps = 6/204 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L++++GY F N  L+  ALTH S + ++ E   RLEFLGD IL  +++  L++ F S  E
Sbjct: 8   LQRKLGYQFNNSELMTLALTHRSANGNHNE---RLEFLGDSILSFVVADDLYHRFPSVDE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G++S    +LV  +T +++ RE +L   + +     K       SI AD VE++I A+YL
Sbjct: 65  GDMSRMRATLVRGKTLAELGREFELGDHLLLGPGELKSGGFRRDSILADCVEAIIGAIYL 124

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D  IE     V  ++K R   ++ G  ++D KT LQE    +    P Y V    G  H+
Sbjct: 125 DSDIEKVREIVLTWYKTRLETIEPGINQKDPKTRLQECLQGRRLPLPAYTVIKVQGEAHN 184

Query: 187 PRFTVVVEISGL-APAQGMDCSKR 209
             FTV  +++GL  P  G   S+R
Sbjct: 185 QEFTVQCDVTGLDKPVIGKGGSRR 208


>gi|319943505|ref|ZP_08017787.1| ribonuclease III [Lautropia mirabilis ATCC 51599]
 gi|319743320|gb|EFV95725.1| ribonuclease III [Lautropia mirabilis ATCC 51599]
          Length = 247

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/219 (36%), Positives = 114/219 (52%), Gaps = 10/219 (4%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           TLE R+GY F + +LL +ALTH S  H  Q + ERLEFLGD +L   +++LL+  F  + 
Sbjct: 26  TLEGRLGYRFQSEALLVQALTHRS--HGRQHN-ERLEFLGDSVLNCAVASLLYARFADSP 82

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG LS    +LV  +    +A  L L   + +    RK       SI AD VE+L+ A++
Sbjct: 83  EGALSRLRANLVKQDPLHDIACGLSLPDALILGEGERKSGGHRRPSILADAVEALLGAIF 142

Query: 128 LDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           L+ G   A   V++ ++    A+   +  +DAKT LQE+        P Y+V    G  H
Sbjct: 143 LESGFAAAAGVVERLYQPLLDAIDPHELGKDAKTRLQEYLQGHRLPLPRYQVVATHGQAH 202

Query: 186 DPRFTVVVEISGLAPA---QGMDCSKRAAEQVAAAEVLK 221
           D RF V  ++    P    +G   S+R AEQVAA   L+
Sbjct: 203 DQRFDVECQLD--KPKLSFEGSGESRRKAEQVAARAALE 239


>gi|325920677|ref|ZP_08182587.1| RNAse III [Xanthomonas gardneri ATCC 19865]
 gi|325548867|gb|EGD19811.1| RNAse III [Xanthomonas gardneri ATCC 19865]
          Length = 227

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/211 (36%), Positives = 109/211 (51%), Gaps = 6/211 (2%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           IG+AFA+  LL +AL H S    + E   RLEFLGD I+ LLI+  L+  +  A EG L+
Sbjct: 13  IGHAFADPGLLAQALRHRSAGTPHNE---RLEFLGDGIVNLLIAEALYQRWPKADEGALT 69

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                LV     + + R L+L   + +     K       SI AD VE+++AA+YLD G 
Sbjct: 70  RARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDCGF 129

Query: 133 EVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           E     V  +++    AL  GK  +D KT LQEW  A+    P Y +   SG +H  +F 
Sbjct: 130 ERCREVVLPWFEPSLAALPVGKAEKDPKTRLQEWLQARQLPLPNYALISESGDEHAKQFH 189

Query: 191 VVVEI-SGLAPAQGMDCSKRAAEQVAAAEVL 220
           V   +   +A A+G   S+R AEQ AA  V+
Sbjct: 190 VACILEQPVARAEGQGTSRRLAEQQAATLVI 220


>gi|319763845|ref|YP_004127782.1| ribonuclease iii [Alicycliphilus denitrificans BC]
 gi|330823891|ref|YP_004387194.1| ribonuclease 3 [Alicycliphilus denitrificans K601]
 gi|317118406|gb|ADV00895.1| ribonuclease III [Alicycliphilus denitrificans BC]
 gi|329309263|gb|AEB83678.1| Ribonuclease 3 [Alicycliphilus denitrificans K601]
          Length = 228

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/194 (35%), Positives = 102/194 (52%), Gaps = 5/194 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             L++R+ + F++ SLL++A+TH S S  + E   RLEFLGD +L L +S+LLF      
Sbjct: 7   PALQQRLQHMFSDPSLLQRAVTHRSFSADHNE---RLEFLGDSVLNLAVSSLLFKRMQGL 63

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS     LV  E+   +A  L L   +R+     +       SI AD +E++I A+
Sbjct: 64  PEGELSRVRALLVRQESLHGIAVRLQLPQVLRLGEGESRSGGKMRPSILADALEAVIGAV 123

Query: 127 YLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD G E A   V + ++   L  +  +  +DAKT LQEW   +    P+Y+V   +G  
Sbjct: 124 YLDAGYEQAQALVHRLFEGVELSPRLQEAAKDAKTALQEWLQGRKMSLPQYRVVQTTGVA 183

Query: 185 HDPRFTVVVEISGL 198
           H   F V  E+  L
Sbjct: 184 HKQVFHVACEVPAL 197


>gi|157371904|ref|YP_001479893.1| ribonuclease III [Serratia proteamaculans 568]
 gi|189043344|sp|A8GI25|RNC_SERP5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|157323668|gb|ABV42765.1| Ribonuclease III [Serratia proteamaculans 568]
          Length = 226

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/212 (34%), Positives = 111/212 (52%), Gaps = 6/212 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F  + LL +ALTH S S  + E   RLEFLGD IL  +I+  LF
Sbjct: 1   MNPIVINRLQRKLGYTFQQQELLLQALTHRSASSKHNE---RLEFLGDSILSFVIANALF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG++S    +LV   T +++ RE DL   +R+     K       SI AD VE
Sbjct: 58  QRFPRVDEGDMSRMRATLVRGNTLAEMGREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSDIQTVERLILDWYRSRLDEISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKR 209
              G  HD  FT+  ++SGL+ P  G   S+R
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRR 209


>gi|319792225|ref|YP_004153865.1| ribonuclease iii [Variovorax paradoxus EPS]
 gi|315594688|gb|ADU35754.1| ribonuclease III [Variovorax paradoxus EPS]
          Length = 228

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/217 (35%), Positives = 114/217 (52%), Gaps = 6/217 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L+ R+ ++F++  LL+ ALTH S S  + E   RLEFLGD +L L +S LL+    +  E
Sbjct: 8   LQARLKHSFSDTRLLQLALTHRSFSADHNE---RLEFLGDSVLNLAVSHLLYTRLSALPE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    +LV  +T  ++A EL L+  +R+     +       SI AD +E+LI A+YL
Sbjct: 65  GDLSRVRANLVKQDTLHRLALELQLSPLLRLGEGEARSGGPNRPSILADALEALIGAVYL 124

Query: 129 DGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D G   A   V + ++   +  +     +D KTELQEW        P Y+V    G  H 
Sbjct: 125 DAGFAAAEALVRRLYESVEITPRMEAAAKDPKTELQEWLQGHKMKLPMYRVAATLGAAHK 184

Query: 187 PRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222
             F V  E+  L    +G+  S+RA EQ AAA +L R
Sbjct: 185 QTFDVECEVPELGFRERGIGGSRRAGEQAAAAAMLIR 221


>gi|237737605|ref|ZP_04568086.1| ribonuclease III [Fusobacterium mortiferum ATCC 9817]
 gi|229419485|gb|EEO34532.1| ribonuclease III [Fusobacterium mortiferum ATCC 9817]
          Length = 240

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 123/231 (53%), Gaps = 10/231 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60
            Y   EK +GY+F N+ LL+ +L H S  + ++     S ERLE LGD +L L+++  L+
Sbjct: 4   NYLDFEKNLGYSFKNKELLKNSLIHRSFGNEHRRYKKISNERLELLGDAVLDLVVTEYLY 63

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             + ++ EG+L+   + +VS    + ++++L++  ++ +S           +SI  D  E
Sbjct: 64  KSYANSTEGDLAKVKSMVVSEPVLAGISKKLEVGKYLLLSRGEELTGGRERSSILGDAFE 123

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +++ A+Y+D   E A  FV  + K     + S +   D KT LQE++   + V PEY V 
Sbjct: 124 AILGAIYMDSNFETAKEFVLTHIKDSIDHVDSNEEILDFKTILQEYSQKNYRVIPEYSVI 183

Query: 179 FRSGPDHDPRFTVVVEI-SGLAPAQ---GMDCSKRAAEQVAAAEVLKREGI 225
              GPDH   F + V+I +G+   +   G   +K+ AEQ AA  + K+ G+
Sbjct: 184 NEIGPDHQKIFEIEVKIDNGIDEEKSDRGTGKNKKTAEQAAAKSLCKKLGV 234


>gi|121610179|ref|YP_997986.1| ribonuclease III [Verminephrobacter eiseniae EF01-2]
 gi|189043373|sp|A1WMW1|RNC_VEREI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|121554819|gb|ABM58968.1| RNAse III [Verminephrobacter eiseniae EF01-2]
          Length = 247

 Score =  112 bits (279), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 83/230 (36%), Positives = 117/230 (50%), Gaps = 28/230 (12%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            L++R+ + F++  LLE+A TH S S    E  ERLEFLGD +L L +S+LL+    +  
Sbjct: 7   ALQERLQHVFSDPGLLERATTHRSFS---AEHNERLEFLGDSVLNLAVSSLLYQRLSALP 63

Query: 68  EGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKD-------VCS---------- 109
           EGELS VR N LV  E+  Q+A  L LA  +R+   L  +        C+          
Sbjct: 64  EGELSRVRAN-LVRQESLYQLALRLPLAQALRLGESLSGNRQRRSRRRCADELQPDEAGS 122

Query: 110 ---FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEW 164
                 SI AD +E+LI A+YLD G   A   V + ++  + + +     RDAKT LQEW
Sbjct: 123 GGLQHPSILADALEALIGAVYLDAGYASAQALVQRLFQDVEISPRMQAAARDAKTALQEW 182

Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQ 213
             ++    P+Y+V  R G  H P F V   I  L   + G   S++A EQ
Sbjct: 183 LASRKMKPPQYQVVARVGAAHCPTFEVACGIPALGLTERGSAGSRQAGEQ 232


>gi|117924215|ref|YP_864832.1| ribonuclease III [Magnetococcus sp. MC-1]
 gi|189043326|sp|A0L633|RNC_MAGSM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|117607971|gb|ABK43426.1| RNAse III [Magnetococcus sp. MC-1]
          Length = 246

 Score =  112 bits (279), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 112/223 (50%), Gaps = 10/223 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES--------YERLEFLGDRILGLLISTLLF 60
           LE+ + Y F    LL+ ALTH S      ++         ERLEFLGD +L L++S  L+
Sbjct: 13  LEQALDYRFTQSDLLQLALTHRSAPLDGSKAGEVVATTHNERLEFLGDSVLNLIVSHRLY 72

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG+LS     LV+  + S+VA++L+L  ++R+     K       SI  + +E
Sbjct: 73  KRFGEVPEGQLSQWRAMLVNTRSLSEVAKDLELGRYLRMGRGEAKSGGREKYSILGNALE 132

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +L+ A+YLDGG E A   VD+ +  +   ++  +  +D KT LQE+  A+    P Y V 
Sbjct: 133 ALLGAIYLDGGFEAAERVVDRLFAHQVAGIEPEQQGKDYKTLLQEYLQARGEALPIYAVL 192

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              GP H+  F V           G   SKR AEQ AA + L+
Sbjct: 193 SAEGPPHERVFVVSCHPREQLCGHGQGRSKREAEQHAAQQALE 235


>gi|289662799|ref|ZP_06484380.1| ribonuclease III [Xanthomonas campestris pv. vasculorum NCPPB702]
 gi|289670321|ref|ZP_06491396.1| ribonuclease III [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 227

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/223 (36%), Positives = 113/223 (50%), Gaps = 6/223 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+A R       IG+AFA+ +LL +AL H S    + E   RLEFLGD I+ LLI+  L+
Sbjct: 1   MAANRTFQRGDLIGHAFADPALLAQALRHRSAGTPHNE---RLEFLGDGIVNLLIAEALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             +  A EG L+     LV     + + R L+L   + +     K       SI AD VE
Sbjct: 58  QRWPKADEGALTRARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +++AA+YLD G E     V  +++    AL  GK  +D KT LQEW  A+    P Y + 
Sbjct: 118 AIVAAIYLDCGFERCRAVVLPWFEASLAALPVGKAEKDPKTRLQEWLQARQLPLPNYALI 177

Query: 179 FRSGPDHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVL 220
             SG +H  +F V   +    A A+G   S+R AEQ AA  V+
Sbjct: 178 SESGDEHAKQFHVACILEQPTARAEGQGTSRRLAEQQAATLVI 220


>gi|166712833|ref|ZP_02244040.1| ribonuclease III [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 226

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 77/211 (36%), Positives = 110/211 (52%), Gaps = 6/211 (2%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           IG+AFA+ +LL +AL H S    + E   RLEFLGD I+ LL++  L+  +  A EG L+
Sbjct: 12  IGHAFADPALLAQALRHRSAGTPHNE---RLEFLGDGIVNLLVAEALYQRWPKADEGALT 68

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                LV     + + R L+L   + +     K       SI AD VE+++AA+YLD G 
Sbjct: 69  RARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDCGF 128

Query: 133 EVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           E     V  +++    AL  GK  +D KT LQEW  A+    P Y +   SG +H  +F 
Sbjct: 129 ERCRAVVLPWFEASLAALPVGKPEKDPKTRLQEWLQARQLPLPNYALISESGDEHAKQFH 188

Query: 191 VVVEI-SGLAPAQGMDCSKRAAEQVAAAEVL 220
           V   +   +A A+G   S+R AEQ AA  V+
Sbjct: 189 VACILEQPVARAEGQGTSRRLAEQQAATLVI 219


>gi|320325568|gb|EFW81630.1| ribonuclease III [Pseudomonas syringae pv. glycinea str. B076]
 gi|320327146|gb|EFW83160.1| ribonuclease III [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330879244|gb|EGH13393.1| ribonuclease III [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 229

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 84/222 (37%), Positives = 117/222 (52%), Gaps = 6/222 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S LE+++GY F ++ L+  ALTH S +     + ERLEFLGD IL  +    LF  F  A
Sbjct: 6   SRLERQLGYTFKDQELMVLALTHRSFAGR---NNERLEFLGDAILNFVAGEALFERFPQA 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +EG+LS     LV  ET + +AR  +L  ++R+ S   K       SI AD +E+LI A+
Sbjct: 63  REGQLSRLRARLVKGETLALLARGFNLGEYLRLGSGELKSGGFRRESILADALEALIGAI 122

Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD G+E A   V  +      +L      +D KT LQE+  ++    P Y+V    G  
Sbjct: 123 YLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACELPRYEVVDIQGEP 182

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225
           H   F V  EI+ L   ++G   S+R AEQVAAA  L   G+
Sbjct: 183 HCRTFFVECEINLLNEKSRGQGVSRRIAEQVAAAAALIALGV 224


>gi|322514172|ref|ZP_08067237.1| ribonuclease III [Actinobacillus ureae ATCC 25976]
 gi|322119958|gb|EFX91960.1| ribonuclease III [Actinobacillus ureae ATCC 25976]
          Length = 222

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 77/215 (35%), Positives = 114/215 (53%), Gaps = 6/215 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L+K++ Y F +   L +ALTH S      ++ ERLEFLGD IL   I   LF  F  A E
Sbjct: 6   LQKKLDYKFISLDYLLQALTHRSAG---AKNNERLEFLGDSILNFAIGKALFEKFPKANE 62

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELS    +LV  +T + +AR+ DL  ++++ +   K       SI +D VE++IAA+YL
Sbjct: 63  GELSRMRATLVREQTLAILARQFDLGEYMKLGAGELKSGGYRRESILSDCVEAIIAAIYL 122

Query: 129 DGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D G++ A   V  +++     +K    ++D KT LQE+   +    P Y+V    G  H+
Sbjct: 123 DSGMDNAIERVSVWYQDLLAEMKPSDAQKDPKTRLQEFLQGRKLKLPAYEVIDIKGEAHN 182

Query: 187 PRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVL 220
             F V  +I        G+  S+R AEQ AA +VL
Sbjct: 183 QTFKVTCKIETFDETFIGVGTSRRKAEQNAAEQVL 217


>gi|312959172|ref|ZP_07773691.1| Ribonuclease 3 [Pseudomonas fluorescens WH6]
 gi|311286942|gb|EFQ65504.1| Ribonuclease 3 [Pseudomonas fluorescens WH6]
          Length = 229

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 85/223 (38%), Positives = 117/223 (52%), Gaps = 8/223 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S LE+++GY F ++ L+  ALTH S +     + ERLEFLGD IL  +    LF  F  A
Sbjct: 6   SRLERQLGYTFKDQELMVLALTHRSFAG---RNNERLEFLGDAILNFVAGEALFERFPQA 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +EG+LS     LV  ET + +AR   L  ++R+ S   K       SI AD +E+LI A+
Sbjct: 63  REGQLSRLRARLVKGETLAVLARGFGLGEYLRLGSGELKSGGFRRESILADALEALIGAI 122

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           YLD G+E A   V   W    ++S       +D KT LQE+  ++    P Y+V    G 
Sbjct: 123 YLDAGMEAAKARVTA-WLTSEIESLTLVDTNKDPKTRLQEFLQSRGCELPRYEVVDIQGE 181

Query: 184 DHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225
            H   F V  EI+ L   ++G   S+R AEQVAAA  L   G+
Sbjct: 182 PHCRVFFVECEITLLNEKSRGQGVSRRIAEQVAAAAALIALGV 224


>gi|304436759|ref|ZP_07396727.1| ribonuclease III [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304370239|gb|EFM23896.1| ribonuclease III [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 238

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 81/216 (37%), Positives = 118/216 (54%), Gaps = 7/216 (3%)

Query: 13  IGYAFANRSLLEKALTHSSISH---SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           +G  FA+ S L++ALTH S ++    +    ERLEFLGD +L L IST L++ +    EG
Sbjct: 20  LGVDFADLSTLDEALTHPSYANEARGHAAHNERLEFLGDAVLELAISTYLYDAYPHCAEG 79

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           EL+    SLV +ET +++AR L L + +R+         +   +   +V E++I A+YLD
Sbjct: 80  ELTKMRASLVQSETLARLARRLHLGAHLRMGRGEMLGGGAERQNNLENVFEAVIGAVYLD 139

Query: 130 GGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
            G + A  +V + +      L+     +D KT LQE+          Y+    SGPDHD 
Sbjct: 140 RGWDAARAYVQRQFADELPHLRQEHVAQDYKTMLQEYVQGHDHEPIAYEQVAESGPDHDK 199

Query: 188 RFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKR 222
           RFT+ V I G AP  +G   SK+ AEQ AAA  L+R
Sbjct: 200 RFTMRVRI-GTAPLGEGTGRSKKEAEQHAAAAALER 234


>gi|56478590|ref|YP_160179.1| ribonuclease III [Aromatoleum aromaticum EbN1]
 gi|81598583|sp|Q5P086|RNC_AZOSE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|56314633|emb|CAI09278.1| ribonuclease III [Aromatoleum aromaticum EbN1]
          Length = 225

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 71/192 (36%), Positives = 101/192 (52%), Gaps = 5/192 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L++ +G+ F N +LLE+ALTH S     Q + ERLEFLGD IL  +++  LF  F S +E
Sbjct: 8   LQRSLGHRFDNPALLEQALTHRSFG---QPNNERLEFLGDSILNCVVAIALFERFASLRE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GE+S    SLV  +   +VA ELDL  ++R+     K       SI AD +E++ AA +L
Sbjct: 65  GEMSRLRASLVCQDGLHRVALELDLGEYLRLGEGEMKSGGFRRPSILADALEAVFAATFL 124

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D G   A   +D+ +     A+  G   +D KT LQE    +    P Y +    G  H 
Sbjct: 125 DQGFAAAKAVIDRLYDPMIAAIDPGVAAKDPKTALQELLQGRKLPLPTYVMAKVHGEAHA 184

Query: 187 PRFTVVVEISGL 198
             F VV E++ L
Sbjct: 185 QEFEVVCEVNAL 196


>gi|294626963|ref|ZP_06705554.1| ribonuclease III [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|294664535|ref|ZP_06729880.1| ribonuclease III [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292598823|gb|EFF42969.1| ribonuclease III [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292605697|gb|EFF49003.1| ribonuclease III [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 226

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 78/211 (36%), Positives = 110/211 (52%), Gaps = 6/211 (2%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           IG+AFA+ +LL +AL H S    + E   RLEFLGD I+ LLI+  L+  +  A EG L+
Sbjct: 12  IGHAFADPALLAQALRHRSAGTPHNE---RLEFLGDGIVNLLIAEALYQRWPKADEGALT 68

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                LV     + + R L+L   + +     K       SI AD VE+++AA+YLD G 
Sbjct: 69  RARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDCGF 128

Query: 133 EVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           E     V  +++    AL  GK  +D KT LQEW  A+    P Y +   SG +H  +F 
Sbjct: 129 ERCRAVVLPWFEASLAALPVGKAEKDPKTRLQEWLQARQLPLPTYVLISESGDEHAKQFH 188

Query: 191 VVVEI-SGLAPAQGMDCSKRAAEQVAAAEVL 220
           V   +   +A A+G   S+R AEQ AA  V+
Sbjct: 189 VACILEQPVARAEGQGTSRRLAEQQAATLVI 219


>gi|257460238|ref|ZP_05625341.1| ribonuclease III [Campylobacter gracilis RM3268]
 gi|257442303|gb|EEV17443.1| ribonuclease III [Campylobacter gracilis RM3268]
          Length = 303

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 71/212 (33%), Positives = 118/212 (55%), Gaps = 9/212 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L++++GY F N++ L+ ALTH S  + +    ERLEFLGD ++ L++   LF  F S+ E
Sbjct: 7   LQEKLGYKFKNQTHLKIALTHKSAKNGHNN--ERLEFLGDAVMDLIVGEYLFKKF-SSDE 63

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    +LV+  + S+ A+ L +   + +S    ++      S+ +D  E+++ A+YL
Sbjct: 64  GDLSKLRAALVNESSFSKFAKFLGIGENLNMSLSEERNGGREKPSLLSDAFEAIMGAVYL 123

Query: 129 DGGIE----VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           + G++    +A   ++  + + +    +  RD KT LQE   AKFGVTPEY +   SGPD
Sbjct: 124 ESGLQNTARIAIAILEILYPRISFN--ELVRDYKTALQELTQAKFGVTPEYILLGSSGPD 181

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           H   F +   + G   +  +  SK+ AEQ  A
Sbjct: 182 HKKSFEMAALVGGKWLSSAVGASKKEAEQKCA 213


>gi|302542233|ref|ZP_07294575.1| ribonuclease III [Streptomyces hygroscopicus ATCC 53653]
 gi|302459851|gb|EFL22944.1| ribonuclease III [Streptomyces himastatinicus ATCC 53653]
          Length = 312

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 72/208 (34%), Positives = 111/208 (53%), Gaps = 6/208 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
           ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L+   
Sbjct: 34  HTILEGRLGYQLES-ALLVRALTHRSFAYENGGLPTNERLEFLGDSVLGLVVTDTLYRIH 92

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+L+    ++V++   ++V R LDL +FIR+             SI AD +E++I
Sbjct: 93  PDLPEGQLAKLRAAVVNSRALAEVGRGLDLGAFIRLGRGEEGTGGRDKASILADTLEAVI 152

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+YLD G++ A   V + +     KS       D KT LQE    +    PEY V+  +
Sbjct: 153 GAVYLDRGLDAAAELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLVS-ET 211

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           GPDH+  FT    + G+A   G   SK+
Sbjct: 212 GPDHEKTFTAAARVGGVAYGTGTGRSKK 239


>gi|55821300|ref|YP_139742.1| ribonuclease III [Streptococcus thermophilus LMG 18311]
 gi|55823213|ref|YP_141654.1| ribonuclease III [Streptococcus thermophilus CNRZ1066]
 gi|81559233|sp|Q5LZ68|RNC_STRT1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|81560422|sp|Q5M3S3|RNC_STRT2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|55737285|gb|AAV60927.1| ribonuclease III [Streptococcus thermophilus LMG 18311]
 gi|55739198|gb|AAV62839.1| ribonuclease III [Streptococcus thermophilus CNRZ1066]
          Length = 237

 Score =  111 bits (278), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 112/222 (50%), Gaps = 7/222 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
           LE+  G  F+ + LLE A TH+S ++ ++       ERLEFLGD  L L+IS  L+N + 
Sbjct: 16  LEQDFGIVFSQKDLLETAFTHTSYANEHRLLNISHNERLEFLGDAALQLVISVYLYNRYP 75

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EGE+S   +++V  E+ +   +      +IR+     K       +I  D+ E+ + 
Sbjct: 76  NKPEGEMSKMRSTIVREESLAGFTKACGFEQYIRLGKGEEKSGGRERATILGDLWEAFLG 135

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182
           ALYLD G+     F+++    +  K G F R  D KT LQE       V   Y V   SG
Sbjct: 136 ALYLDQGLPAVEKFLNQVMIPQVEK-GNFDRVIDYKTALQERLQVNGKVDITYTVIDESG 194

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           P H   FT+ V + G   + G+  SK+ AEQ AA   L++ G
Sbjct: 195 PAHAKEFTMQVAVDGKELSTGLGKSKKLAEQAAAKSALEQLG 236


>gi|148658678|ref|YP_001278883.1| ribonuclease III [Roseiflexus sp. RS-1]
 gi|254807897|sp|A5V230|RNC_ROSS1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|148570788|gb|ABQ92933.1| RNAse III [Roseiflexus sp. RS-1]
          Length = 237

 Score =  111 bits (278), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 70/193 (36%), Positives = 104/193 (53%), Gaps = 8/193 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE------SYERLEFLGDRILGLLISTLLFNH 62
           L  R+G  F+++ LLE+ALTHSS  + + E      S ERLEFLGD I+  L + L+F  
Sbjct: 8   LSARLGVTFSDQRLLEQALTHSSFLNEHVEERMHLDSNERLEFLGDAIINFLAARLVFER 67

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F  A EGEL+    +L+  ET +  A+  +L +++ ++            ++ AD  E++
Sbjct: 68  FPDAGEGELTAWRTALIRTETLAGFAQRYNLGAYVLLARGEESSGARQRQALLADTFEAV 127

Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           IAAL+LD G+    TF+   ++    +L       D K+ LQ    A+  VTP Y    R
Sbjct: 128 IAALFLDQGLNAVRTFLLPLFEAELASLPDRTLPVDYKSRLQARIQAERRVTPRYHEIDR 187

Query: 181 SGPDHDPRFTVVV 193
           SGP+H P FTV V
Sbjct: 188 SGPEHRPEFTVEV 200


>gi|58581478|ref|YP_200494.1| ribonuclease III [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84623408|ref|YP_450780.1| ribonuclease III [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|75435762|sp|Q5H1R2|RNC_XANOR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|58426072|gb|AAW75109.1| ribonuclease III [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84367348|dbj|BAE68506.1| ribonuclease III [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 226

 Score =  111 bits (278), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 77/211 (36%), Positives = 109/211 (51%), Gaps = 6/211 (2%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           IG+AFA+  LL +AL H S    + E   RLEFLGD I+ LL++  L+  +  A EG L+
Sbjct: 12  IGHAFADPDLLAQALRHRSAGTPHNE---RLEFLGDGIVNLLVAEALYQRWPKADEGALT 68

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                LV     + + R L+L   + +     K       SI AD VE+++AA+YLD G 
Sbjct: 69  RARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDCGF 128

Query: 133 EVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           E     V  +++    AL  GK  +D KT LQEW  A+    P Y +   SG +H  +F 
Sbjct: 129 ERCRAVVLPWFEASLAALPVGKAEKDPKTRLQEWLQARQLPLPNYALISESGDEHAKQFH 188

Query: 191 VVVEI-SGLAPAQGMDCSKRAAEQVAAAEVL 220
           V   +   +A A+G   S+R AEQ AA  V+
Sbjct: 189 VACILEQPVARAEGQGTSRRLAEQQAATLVI 219


>gi|207109381|ref|ZP_03243543.1| ribonuclease III [Helicobacter pylori HPKX_438_CA4C1]
          Length = 197

 Score =  111 bits (278), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 68/182 (37%), Positives = 106/182 (58%), Gaps = 8/182 (4%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y+TLEK +GY+F ++ LLE+ALTH S   +     ERLEFLGD +LGL+I  LL++ F  
Sbjct: 20  YTTLEKALGYSFKDKRLLEQALTHKSCKLALNN--ERLEFLGDAVLGLVIGELLYHKFYQ 77

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA+  +++A+ + L  ++RVSS           SI +   E+L+A 
Sbjct: 78  YDEGKLSKLRASIVSAQGFTKLAKVISLQDYLRVSSSEEISKGREKPSILSSAFEALMAG 137

Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +YL+ G+    ++    +++ +K+  L+      D KT LQE   A+F V P Y++    
Sbjct: 138 VYLEAGLAKVRKIMQNLLNRAYKRLDLEH--LSVDYKTALQELTQAQFCVIPTYQLLKEK 195

Query: 182 GP 183
           GP
Sbjct: 196 GP 197


>gi|194335354|ref|YP_002017148.1| Ribonuclease III [Pelodictyon phaeoclathratiforme BU-1]
 gi|194307831|gb|ACF42531.1| Ribonuclease III [Pelodictyon phaeoclathratiforme BU-1]
          Length = 273

 Score =  111 bits (278), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 80/233 (34%), Positives = 116/233 (49%), Gaps = 15/233 (6%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISH-----SYQESYERLEFLGDRILGLLI 55
           +SA   + L++ +G   +N  L + ALTH S+ H     S  ES +RLEFLGD +LG+LI
Sbjct: 39  LSAETVAYLQQLVGEPVSNLPLYQTALTHRSVVHDPATTSLIESNQRLEFLGDSVLGMLI 98

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S  LF  F ++ EGELS     +V++++ +  AR L L   + +             S  
Sbjct: 99  SEYLFRKFPTSAEGELSSNRAKIVNSKSLAGFARSLCLGDHLILGESADHHKIRSSESAL 158

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR------RDAKTELQEWAHAKF 169
           AD  ESLI A+YLD GI+ A  FV +   +       F        + K+ L E+  +  
Sbjct: 159 ADAFESLIGAIYLDKGIKTAFDFVIRSIIEHV----NFNTIVAAEHNYKSRLIEYTQSNH 214

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              P Y V   +G +H+  FTV V  SG     G    K+ AEQ+AA E ++R
Sbjct: 215 LPPPLYTVITETGAEHEKSFTVGVSCSGELLGTGTAQRKKDAEQLAAKEAMER 267


>gi|188577282|ref|YP_001914211.1| ribonuclease III [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188521734|gb|ACD59679.1| ribonuclease III [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 226

 Score =  111 bits (278), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 77/211 (36%), Positives = 109/211 (51%), Gaps = 6/211 (2%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           IG+AFA+  LL +AL H S    + E   RLEFLGD I+ LL++  L+  +  A EG L+
Sbjct: 12  IGHAFADPDLLAQALRHRSAGTPHNE---RLEFLGDGIVNLLVAEALYQRWPKADEGALT 68

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                LV     + + R L+L   + +     K       SI AD VE+++AA+YLD G 
Sbjct: 69  RARAELVREGALAVIGRTLNLGERLTLGPGEWKSGGHRRDSILADAVEAIVAAIYLDCGF 128

Query: 133 EVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           E     V  +++    AL  GK  +D KT LQEW  A+    P Y +   SG +H  +F 
Sbjct: 129 ERCRAVVLPWFEASLAALPVGKAEKDPKTRLQEWLQARQLPLPNYALISESGDEHAKQFH 188

Query: 191 VVVEI-SGLAPAQGMDCSKRAAEQVAAAEVL 220
           V   +   +A A+G   S+R AEQ AA  V+
Sbjct: 189 VACILEQPVARAEGQGTSRRLAEQQAATLVI 219


>gi|167745647|ref|ZP_02417774.1| hypothetical protein ANACAC_00339 [Anaerostipes caccae DSM 14662]
 gi|317472750|ref|ZP_07932063.1| ribonuclease III [Anaerostipes sp. 3_2_56FAA]
 gi|167654959|gb|EDR99088.1| hypothetical protein ANACAC_00339 [Anaerostipes caccae DSM 14662]
 gi|316899776|gb|EFV21777.1| ribonuclease III [Anaerostipes sp. 3_2_56FAA]
          Length = 231

 Score =  111 bits (278), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 83/232 (35%), Positives = 119/232 (51%), Gaps = 8/232 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLIS 56
           M+       +K+I   F ++ LL  ALTHSS ++    S  +  ERLEFLGD +L L++S
Sbjct: 1   MNQSNQEDFQKKIKIRFHDKKLLTTALTHSSYANERKLSRGKDNERLEFLGDAVLELIMS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF+ +    EG+L+    SLV   T +  A++L L  ++ +S            SI +
Sbjct: 61  DYLFHTYKDEPEGKLTKMRASLVCEPTLAFCAKDLSLGDYLLLSKGEDLTGGRERDSILS 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP-EY 175
           D  E++I A+YLD G E A  FV+ Y  Q   +   F  DAKT LQE   + F   P  Y
Sbjct: 121 DAFEAVIGAVYLDQGFEEARKFVETYLLQDVDEKVLF-YDAKTSLQELVQS-FSKQPLTY 178

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK-REGIW 226
           ++    GPDH   FTV   +       G   SK++AEQ AA E +K ++GI 
Sbjct: 179 ELIKEDGPDHQKTFTVEARLGEKVIGTGTGRSKKSAEQTAAYEAMKHKDGIL 230


>gi|322834127|ref|YP_004214154.1| ribonuclease III [Rahnella sp. Y9602]
 gi|321169328|gb|ADW75027.1| ribonuclease III [Rahnella sp. Y9602]
          Length = 226

 Score =  111 bits (278), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 73/212 (34%), Positives = 112/212 (52%), Gaps = 6/212 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F  + LL +ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFQQQELLLQALTHRSASSKHNE---RLEFLGDSILSYVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSDIQTVEKLILDWYRSRLDEISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKR 209
              G  HD  FT+  ++SGL  P  G   S+R
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLNQPVVGTGSSRR 209


>gi|319939366|ref|ZP_08013726.1| ribonuclease 3 [Streptococcus anginosus 1_2_62CV]
 gi|319811352|gb|EFW07647.1| ribonuclease 3 [Streptococcus anginosus 1_2_62CV]
          Length = 232

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 112/224 (50%), Gaps = 7/224 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +  L ++ G  F +  LLE A TH+S ++ ++       ERLEFLGD +L LLIS  L+ 
Sbjct: 5   HKVLSQQFGIVFQDEKLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLISEYLYK 64

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +    EG+LS   +++V  E+ +  +R+     FI++     K       +I  D+ E+
Sbjct: 65  KYPKKPEGDLSKLRSTIVREESLAGFSRDCQFDQFIKLGRGEEKSGGRNRDTILGDLFEA 124

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179
            + AL LD G+E    F+ +    + ++ G F +  D KT+LQE       V   Y+V  
Sbjct: 125 FLGALLLDKGVEAVKNFLYQVMIPK-VEVGDFEQVVDYKTKLQELLQVNGDVEIVYQVIS 183

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            SGP H   F V V + G    QG   SK+ AEQ AA    ++E
Sbjct: 184 ESGPAHAKEFAVAVSVDGRTVGQGQGRSKKLAEQEAAKNAFEKE 227


>gi|324993856|gb|EGC25775.1| ribonuclease III [Streptococcus sanguinis SK405]
 gi|325690806|gb|EGD32807.1| ribonuclease III [Streptococcus sanguinis SK115]
 gi|332367146|gb|EGJ44882.1| ribonuclease III [Streptococcus sanguinis SK1059]
          Length = 232

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 118/229 (51%), Gaps = 8/229 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + LE+     F++ +LLE A TH+S ++ ++       ERLEFLGD +L L+IS
Sbjct: 1   MENLKKALLEQ-FDLVFSDETLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS   + +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYTKYPKRPEGDLSKLRSMIVREESLAGFARDCQFDQFIKLGRGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D+ E+ + AL LD G+E   +F+ +    + +++G F R  D KT+LQE       V   
Sbjct: 120 DLFEAFLGALLLDKGVEAVKSFLYQVMIPK-VEAGDFERVTDYKTKLQELLQINGDVEIT 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           Y+V   +GP H   F V V I+G    QG   SK+ AEQ AA    ++E
Sbjct: 179 YQVVSETGPAHAKNFEVAVLINGRKSGQGQGRSKKLAEQEAAKNAFEKE 227


>gi|33519987|ref|NP_878819.1| ribonuclease III [Candidatus Blochmannia floridanus]
 gi|81666891|sp|Q7VRR0|RNC_BLOFL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|33504333|emb|CAD83226.1| ribonuclease III [Candidatus Blochmannia floridanus]
          Length = 232

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 115/225 (51%), Gaps = 8/225 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           +  +  + L+K++GY F    LL +ALTH S S+ + E   RLEFLGD IL   I+ +L+
Sbjct: 4   IKCIEINLLQKKLGYFFHTVDLLLRALTHRSFSNKHNE---RLEFLGDSILNYSITNILY 60

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + ++   EG++S   +SLV + T  ++A+E  L + +++     K+      SI AD VE
Sbjct: 61  HRYNHMDEGDMSRIRSSLVCSRTLVELAKEFKLGNCLKLGQGELKNKGYNRESILADTVE 120

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKV 177
           ++I  ++LD  I+     +  +W Q  L        ++D KT LQE+        P Y +
Sbjct: 121 AIIGGIFLDSNIKTIEMLI-AFWYQFRLNKIDLEDKQKDPKTRLQEYLQHHHLPLPIYCI 179

Query: 178 TFRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221
               G  HD  F +  ++S L     G   S+R AEQ AA   LK
Sbjct: 180 NQVQGQAHDQIFIMNCQVSSLKYSVMGRGSSRRKAEQDAAENALK 224


>gi|125718368|ref|YP_001035501.1| ribonuclease III [Streptococcus sanguinis SK36]
 gi|189043368|sp|A3CP46|RNC_STRSV RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|125498285|gb|ABN44951.1| Ribonuclease III, putative [Streptococcus sanguinis SK36]
 gi|324994823|gb|EGC26736.1| ribonuclease III [Streptococcus sanguinis SK678]
 gi|325687264|gb|EGD29286.1| ribonuclease III [Streptococcus sanguinis SK72]
 gi|325694850|gb|EGD36755.1| ribonuclease III [Streptococcus sanguinis SK150]
 gi|332358679|gb|EGJ36502.1| ribonuclease III [Streptococcus sanguinis SK355]
 gi|332358950|gb|EGJ36771.1| ribonuclease III [Streptococcus sanguinis SK49]
          Length = 232

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 118/229 (51%), Gaps = 8/229 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + LE+     F++ +LLE A TH+S ++ ++       ERLEFLGD +L L+IS
Sbjct: 1   MENLKKALLEQ-FDLVFSDETLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS   + +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYTKYPKRPEGDLSKLRSMIVREESLAGFARDCQFDQFIKLGRGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D+ E+ + AL LD G+E   +F+ +    + +++G F R  D KT+LQE       V   
Sbjct: 120 DLFEAFLGALLLDKGVEAVKSFLYQVMIPK-VEAGDFERVTDYKTKLQELLQINGDVEIA 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           Y+V   +GP H   F V V I+G    QG   SK+ AEQ AA    ++E
Sbjct: 179 YQVVSETGPAHAKNFEVAVLINGRKSGQGQGRSKKLAEQEAAKNAFEKE 227


>gi|268608881|ref|ZP_06142608.1| ribonuclease III [Ruminococcus flavefaciens FD-1]
          Length = 229

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 78/220 (35%), Positives = 119/220 (54%), Gaps = 5/220 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDS 65
            E  IGY F N+ L+E+AL+HSS ++  +    S ERLEFLGD +L +++S  L+ + + 
Sbjct: 7   FENIIGYTFKNKELIEQALSHSSYANEKKRAGGSNERLEFLGDSVLSIVVSDYLYKNIN- 65

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGEL+    SLV  ++    A++++L  F+ +             SI AD  E++IAA
Sbjct: 66  VPEGELTKMRASLVCEKSLFVFAQQIELGEFLHLGKGEENTGGRERPSILADAFEAVIAA 125

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           +YLDGG+E A   + ++  +   ++ K    D KT LQE          EY +    GPD
Sbjct: 126 IYLDGGMEAAAKHILRFMPEDIKRTKKPVLSDFKTLLQEVVQKNPEEKVEYVLIGEEGPD 185

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           H+ RF V V ++     +G   SK+ AEQ+AA E L+  G
Sbjct: 186 HNKRFVVEVCLNSQVIGKGKGKSKKEAEQLAAKEALELMG 225


>gi|323351215|ref|ZP_08086871.1| ribonuclease III [Streptococcus sanguinis VMC66]
 gi|322122439|gb|EFX94150.1| ribonuclease III [Streptococcus sanguinis VMC66]
 gi|324991496|gb|EGC23429.1| ribonuclease III [Streptococcus sanguinis SK353]
 gi|328946755|gb|EGG40893.1| ribonuclease III [Streptococcus sanguinis SK1087]
          Length = 232

 Score =  111 bits (277), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 118/229 (51%), Gaps = 8/229 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + LE+     F++ +LLE A TH+S ++ ++       ERLEFLGD +L L+IS
Sbjct: 1   MENLKKALLEQ-FDLVFSDETLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS   + +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYTKYPKRPEGDLSKLRSMIVREESLAGFARDCQFDHFIKLGRGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D+ E+ + AL LD G+E   +F+ +    + +++G F R  D KT+LQE       V   
Sbjct: 120 DLFEAFLGALLLDKGVEAVKSFLYQVMIPK-VEAGDFERVTDYKTKLQELLQINGDVEIT 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           Y+V   +GP H   F V V I+G    QG   SK+ AEQ AA    ++E
Sbjct: 179 YQVVSETGPAHAKNFEVAVLINGRKSGQGQGRSKKLAEQEAAKNAFEKE 227


>gi|327461014|gb|EGF07347.1| ribonuclease III [Streptococcus sanguinis SK1057]
          Length = 232

 Score =  111 bits (277), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 117/229 (51%), Gaps = 8/229 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M   + + LE+     FA+ +LLE A TH+S ++ ++       ERLEFLGD +L L+IS
Sbjct: 1   MENFKKALLEQ-FDLVFADETLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS   + +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYTKYPKRPEGDLSKLRSMIVREESLAGFARDCQFDQFIKLGRGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D+ E+ + AL LD G+E   +F+ +    + +++G F R  D KT+LQE       V   
Sbjct: 120 DLFEAFLGALLLDKGVEAVKSFLYQVMIPK-VEAGDFERVTDYKTKLQELLQINGDVEIT 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           Y+V   +GP H   F V V I+G    QG   SK+ AEQ AA    ++E
Sbjct: 179 YQVVSETGPAHAKNFEVAVLINGRKSGQGQGRSKKLAEQEAAKNAFEKE 227


>gi|322379758|ref|ZP_08054068.1| ribonuclease III [Helicobacter suis HS5]
 gi|321147829|gb|EFX42419.1| ribonuclease III [Helicobacter suis HS5]
          Length = 224

 Score =  111 bits (277), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 71/213 (33%), Positives = 109/213 (51%), Gaps = 4/213 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           + TL+KR+GY F +  LL++ALTH S      ++ ERLEFLGD +L L+++ +LF  F  
Sbjct: 2   FETLQKRLGYVFKDPLLLQQALTHRSTKA--HKNNERLEFLGDAVLDLVVAEILFTRFTD 59

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
            +EG+LS    SLV+ +   ++A  L+L   I +S     +      SI +   E+L+ A
Sbjct: 60  LQEGDLSKMRASLVNEKAFFKLALSLNLQDHILISQAEANNNGHTKPSILSSAFEALMGA 119

Query: 126 LYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YL+ G+E+    +          L       D K+ LQE   A+F   P Y +   SGP
Sbjct: 120 IYLESGLEIIKNLIQDLLDMAYPNLSPKTLFMDYKSALQELTQARFKAIPIYALKSESGP 179

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           DH  +F + + I           SK+ AEQ+ A
Sbjct: 180 DHAKQFEMQIFILNKLYGTCKAGSKKQAEQLCA 212


>gi|297156899|gb|ADI06611.1| ribonuclease III [Streptomyces bingchenggensis BCW-1]
          Length = 276

 Score =  111 bits (277), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 72/212 (33%), Positives = 113/212 (53%), Gaps = 6/212 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           +A  ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L
Sbjct: 20  TASSHTILEGRLGYQLES-ALLVRALTHRSFAYENGGLPTNERLEFLGDSVLGLVVTDTL 78

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +       EG+L+    ++V++   ++V R LDL +FIR+             SI AD +
Sbjct: 79  YRIHPDLPEGQLAKLRAAVVNSRALAEVGRGLDLGAFIRLGRGEEGTGGRDKASILADTL 138

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD G++ A   V + +     +S       D KT LQE    +    PEY V
Sbjct: 139 EAVIGAVYLDKGLDAAAELVHRLFDPLIDRSSNLGAGLDWKTSLQELTATEGLGVPEYLV 198

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           +  +GPDH+  FT    + G+A   G   SK+
Sbjct: 199 S-ETGPDHEKTFTAAARVGGVAYGTGTGRSKK 229


>gi|323340721|ref|ZP_08080973.1| ribonuclease III [Lactobacillus ruminis ATCC 25644]
 gi|323091844|gb|EFZ34464.1| ribonuclease III [Lactobacillus ruminis ATCC 25644]
          Length = 230

 Score =  111 bits (277), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 110/219 (50%), Gaps = 7/219 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFD 64
           L+   G    N  L ++A TH+S  + + +     YER+EFLGD ++ L +S  LF  + 
Sbjct: 9   LKDDYGINVKNTDLFDEAFTHASYVNEHPKEHLKYYERIEFLGDAVMQLCVSEYLFKRYP 68

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           S  EG+LS    ++V  ++ S+ A+E     +IR+     K      +S+  D+ ES I 
Sbjct: 69  SLPEGKLSRLRAAMVCEDSFSKFAKECHFDEYIRLGKGEEKADARNRSSLLCDIFESFIG 128

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182
           ALYLD G +    F+      + L  G F    D KTELQE+         EYK+    G
Sbjct: 129 ALYLDQGKDKVVEFISAVVFPK-LDMGWFDHLLDHKTELQEYLQQNGDCKIEYKMLDEKG 187

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           PD+D  +T+ V   G    +G+  SK+ AEQ AA + LK
Sbjct: 188 PDNDKTYTMAVYADGKKIGEGVGSSKKNAEQAAAYQALK 226


>gi|297568930|ref|YP_003690274.1| ribonuclease III [Desulfurivibrio alkaliphilus AHT2]
 gi|296924845|gb|ADH85655.1| ribonuclease III [Desulfurivibrio alkaliphilus AHT2]
          Length = 232

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 79/216 (36%), Positives = 106/216 (49%), Gaps = 5/216 (2%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLFNHFDSA 66
           +R+GY F +  LL +ALTH S +       +   ERLEFLGD +L L +  LL+      
Sbjct: 12  QRLGYCFHDPQLLRQALTHRSFTAEGGGRGRPHNERLEFLGDAVLDLAVGELLYRRHPKM 71

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +EGELS R  +LV+    +++AR   L   + +     +       SI AD  E+L+ A+
Sbjct: 72  REGELSRRRAALVNEAHLARMARRTGLDELLLLGRGEAQSGGRDKPSILADAFEALLGAV 131

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           YLDGG         + +         F   DAKT LQE    + G  P Y++    GP H
Sbjct: 132 YLDGGCRAVLDLAAELFAPWVTDQDDFEENDAKTALQEVLQERHGQAPGYRLVAEEGPAH 191

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           D RFTV VE  G    QG   SK+ AEQ AA   LK
Sbjct: 192 DKRFTVEVEFRGRVMGQGKARSKKEAEQAAARAALK 227


>gi|327463120|gb|EGF09441.1| ribonuclease III [Streptococcus sanguinis SK1]
 gi|327474731|gb|EGF20136.1| ribonuclease III [Streptococcus sanguinis SK408]
 gi|327490288|gb|EGF22076.1| ribonuclease III [Streptococcus sanguinis SK1058]
 gi|332362454|gb|EGJ40254.1| ribonuclease III [Streptococcus sanguinis SK1056]
          Length = 232

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 118/229 (51%), Gaps = 8/229 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + LE+     F++ +LLE A TH+S ++ ++       ERLEFLGD +L L+IS
Sbjct: 1   MENLKKALLEQ-FDLVFSDETLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS   + +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYTKYPKRPEGDLSKLRSMIVREESLAGFARDCQFDHFIKLGRGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D+ E+ + AL LD G+E   +F+ +    + +++G F R  D KT+LQE       V   
Sbjct: 120 DLFEAFLGALLLDKGVEAVKSFLYQVMIPK-VEAGDFERVTDYKTKLQELLQINGDVEIA 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           Y+V   +GP H   F V V I+G    QG   SK+ AEQ AA    ++E
Sbjct: 179 YQVVSETGPAHAKNFEVAVLINGRKSGQGQGRSKKLAEQEAAKNAFEKE 227


>gi|300311260|ref|YP_003775352.1| dsRNA-specific ribonuclease [Herbaspirillum seropedicae SmR1]
 gi|300074045|gb|ADJ63444.1| dsRNA-specific ribonuclease (RNAse III) protein [Herbaspirillum
           seropedicae SmR1]
          Length = 319

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 76/215 (35%), Positives = 112/215 (52%), Gaps = 14/215 (6%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L++R+G+ F + SLL++ALTH S S  + E   RLEFLGD +L  ++++LLF  +D   E
Sbjct: 6   LQQRLGHTFKDASLLQQALTHRSHSALHNE---RLEFLGDSVLNCVVASLLFERYDKIDE 62

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    +LV  ++  ++A+ L+L+ F+R+     K       SI AD +E+L  A++L
Sbjct: 63  GDLSRLRANLVKQQSLYEIAQRLELSQFLRLGEGELKSGGFRRPSILADTLEALFGAIFL 122

Query: 129 DGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D G E A   +   +      +      +DAKT LQE+   K    P+Y V    G  H 
Sbjct: 123 DSGFEAARAVIRSLYVPVLEHVDPRTLGKDAKTLLQEFLQGKKIPLPQYNVIATHGAAHS 182

Query: 187 PRFTVVVEISGLAPAQ-----GMDCSKRAAEQVAA 216
             F    EI  L P       G   S+RA EQ AA
Sbjct: 183 QEF----EIECLVPKLDIQVFGTGGSRRAGEQAAA 213


>gi|152986476|ref|YP_001350091.1| ribonuclease III [Pseudomonas aeruginosa PA7]
 gi|189043330|sp|A6VAK6|RNC_PSEA7 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|150961634|gb|ABR83659.1| ribonuclease III [Pseudomonas aeruginosa PA7]
          Length = 229

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 82/220 (37%), Positives = 119/220 (54%), Gaps = 6/220 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE+++GY F ++ L+  ALTH S +     + ERLEFLGD IL  +I   LF+HF  A+E
Sbjct: 8   LERKLGYTFKDQDLMVLALTHRSYA---GRNNERLEFLGDAILNFVIGEALFHHFPQARE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS     LV  ET + +AR  ++  ++R+ S   K       SI AD +E+LI A+YL
Sbjct: 65  GQLSRLRARLVKGETLALLARGFEVGDYLRLGSGELKSGGFRRESILADAMEALIGAIYL 124

Query: 129 DGGIEVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D G++ A   +  +   + R L      +D KT LQE+  ++    P Y+V    G  H 
Sbjct: 125 DTGMDSARERIIAWLGPQLRELTPVDTNKDPKTRLQEFLQSRGCDLPRYEVVDIQGEPHC 184

Query: 187 PRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKREGI 225
             F V  E++ L+    G   S+R AEQVAAA  L   G+
Sbjct: 185 RTFFVDCEVALLSDKTHGHGGSRRIAEQVAAAAALVALGV 224


>gi|300704607|ref|YP_003746210.1| ribonuclease III (RNAse III) [Ralstonia solanacearum CFBP2957]
 gi|299072271|emb|CBJ43604.1| Ribonuclease III (RNase III) [Ralstonia solanacearum CFBP2957]
          Length = 256

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 77/212 (36%), Positives = 112/212 (52%), Gaps = 8/212 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L++R+GY F+ + LL++ALTH S S ++ E   RLEFLGD IL   ++ +L+  F    E
Sbjct: 6   LQQRLGYRFSKQELLQQALTHRSHSATHNE---RLEFLGDSILNCAVADMLYGMFGKLDE 62

Query: 69  GELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           G+LS VR N LV  +   ++A+ L L   +R+     K       SI AD +E++  A++
Sbjct: 63  GDLSRVRAN-LVKQQALYEIAQMLQLPDALRLGEGELKSGGFRRPSILADALEAIFGAVF 121

Query: 128 LDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           LDGG + A T + K +      +      +DAKT LQE+        P+Y V    G  H
Sbjct: 122 LDGGFDAARTLIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYAVVATHGAAH 181

Query: 186 DPRFTVVVEISGLA-PAQGMDCSKRAAEQVAA 216
           + +F V   I  L     G   S+RAAEQ AA
Sbjct: 182 NQQFEVECTIPKLEIRVSGSGASRRAAEQSAA 213


>gi|166365898|ref|YP_001658171.1| ribonuclease III [Microcystis aeruginosa NIES-843]
 gi|166088271|dbj|BAG02979.1| ribonuclease III [Microcystis aeruginosa NIES-843]
          Length = 226

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 73/216 (33%), Positives = 105/216 (48%), Gaps = 11/216 (5%)

Query: 17  FANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           F N  LL +ALTH S  +      E+ ERLEFLGD IL  L+  LL+  + +  E EL+ 
Sbjct: 7   FQNALLLTQALTHRSYVNEQSELTENNERLEFLGDAILAFLVGELLYQKYPAMNEAELTR 66

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
             ++LV  E  +Q+  E+ L   +R+     KD      ++ AD  E++I A YLD G+ 
Sbjct: 67  LRSNLVKEEQLAQLGLEIGLGELMRLGKGAIKDRGRSNPTLLADTFEAIIGAYYLDSGLN 126

Query: 134 VAGTF-------VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
               +       V  +   +  +S  F  DAK   Q+WA A F   PEY +   +GP H 
Sbjct: 127 AVKNYLHGLFIPVASHLVSQQSESSSF-IDAKNLFQQWALANFASNPEYAIIDVTGPPHA 185

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             FT  V ++ L    G    K+ A + AA + LKR
Sbjct: 186 REFTAEVRVNNLLYGTGKGKRKQDATKAAAEDALKR 221


>gi|238759682|ref|ZP_04620842.1| Ribonuclease 3 [Yersinia aldovae ATCC 35236]
 gi|238702110|gb|EEP94667.1| Ribonuclease 3 [Yersinia aldovae ATCC 35236]
          Length = 226

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 119/225 (52%), Gaps = 6/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F  + LL +ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFQQQELLLQALTHRSASSKHNE---RLEFLGDSILSFVIANELY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I      +  ++  R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGIFLDSDIHTIERLILAWYHSRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222
              G  HD  FT+  ++SGL  P  G   S+R AEQ AA + LK+
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLNEPVVGTGSSRRKAEQAAAEQALKQ 222


>gi|117928781|ref|YP_873332.1| ribonuclease III [Acidothermus cellulolyticus 11B]
 gi|117649244|gb|ABK53346.1| RNAse III [Acidothermus cellulolyticus 11B]
          Length = 246

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 77/209 (36%), Positives = 114/209 (54%), Gaps = 11/209 (5%)

Query: 21  SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           +LLE+A+TH S ++      + ERLEFLGD +LGL+I+  L+  F    EG+L+   +++
Sbjct: 30  ALLERAVTHRSYAYENGGLPTNERLEFLGDAVLGLVITDTLYRRFPELPEGQLAKFRSAV 89

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138
           V+    ++VAR L L  F+R+            +SI AD +E+LI A+Y++ G++ A  F
Sbjct: 90  VNMRALAEVARSLRLGEFLRLGRGEESTGGRNKSSILADALEALIGAVYVEHGLDGAAEF 149

Query: 139 VDKYW-----KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
           V + +     +  AL +G    D KT LQE   A+    P Y ++ R GPDH+  FT  V
Sbjct: 150 VHRLFDPLIDRAAALGAGL---DWKTSLQELTAAQHLGVPFYDLSER-GPDHEKVFTAEV 205

Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            I G     G   SK+ AEQ AA E   R
Sbjct: 206 RIGGRVYGTGSGHSKKEAEQRAAQEAWLR 234


>gi|238926905|ref|ZP_04658665.1| ribonuclease III [Selenomonas flueggei ATCC 43531]
 gi|238885139|gb|EEQ48777.1| ribonuclease III [Selenomonas flueggei ATCC 43531]
          Length = 238

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 75/202 (37%), Positives = 110/202 (54%), Gaps = 5/202 (2%)

Query: 17  FANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           FA+ SLLE+ALTH S  +  +E     ERLEFLGD +L L IST L+  +    EGEL+ 
Sbjct: 24  FADLSLLEEALTHPSYVNEARERATHNERLEFLGDAVLELAISTYLYVAYPHCSEGELTK 83

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
              SLV +ET +++AR L L + +R+         +   +   +V E++I A+YLD G +
Sbjct: 84  MRASLVQSETLARLARRLHLGAHLRMGRGEMLGGGAERQNNLENVFEAVIGAVYLDRGWD 143

Query: 134 VAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
            A ++V + + +    L+     +D KT LQE+          Y+    SGPDHD RFT+
Sbjct: 144 AAYSYVQRQFTEEVTRLRQEHAVQDYKTMLQEYVQGHRHECIAYEQVAESGPDHDKRFTM 203

Query: 192 VVEISGLAPAQGMDCSKRAAEQ 213
            V I      +G+  SK+ AEQ
Sbjct: 204 RVRIGMEVLGEGIGRSKKEAEQ 225


>gi|158521513|ref|YP_001529383.1| ribonuclease III [Desulfococcus oleovorans Hxd3]
 gi|158510339|gb|ABW67306.1| Ribonuclease III [Desulfococcus oleovorans Hxd3]
          Length = 231

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 111/223 (49%), Gaps = 7/223 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLL 59
           +  + LE+ + Y F +  LL KAL HSS     +    E  ERLEFLGD  L L I  LL
Sbjct: 1   MNTTLLEQHLVYRFTDTGLLAKALRHSSYVNEQADPAMEDNERLEFLGDAALSLCIGHLL 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
              F    EG+LS     LV+A   + + R ++L  ++ +     +       SI A+ V
Sbjct: 61  MARFPELSEGDLSQTRAGLVNAGWLADIGRSMNLGEYVLLGKGEEQTNGRNKDSILANAV 120

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E+L+ A+YLDGG +     V   ++    AL +    R+ K+ LQE   A  G  P Y++
Sbjct: 121 EALLGAIYLDGGFDAVMAVVRHKFENDIEALAALDMNRNYKSLLQELTQATDGKAPTYEI 180

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
              +GPDHD  F   V  +G   A+G   +K+ A+Q AA + L
Sbjct: 181 IDETGPDHDKTFHCRVS-AGDIQAEGSGKNKKTAQQDAAHKAL 222


>gi|330811510|ref|YP_004355972.1| ribonuclease III [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327379618|gb|AEA70968.1| Ribonuclease III [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 229

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/222 (37%), Positives = 117/222 (52%), Gaps = 6/222 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S LE+++GY F ++ L+  ALTH S +     + ERLEFLGD IL  +    LF  F  A
Sbjct: 6   SRLERQLGYTFKDQDLMLLALTHRSFAG---RNNERLEFLGDAILNFVAGEALFERFPLA 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +EG+LS     LV  ET + +AR  DL  ++R+ S   K       SI AD +E+LI A+
Sbjct: 63  REGQLSRLRARLVKGETLAVLARGFDLGDYLRLGSGELKSGGFRRESILADALEALIGAI 122

Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD G+E+A   V  +      +L      +D KT LQE+  ++    P Y+V    G  
Sbjct: 123 YLDAGMEMARERVLAWLTSEIDSLTLVDTNKDPKTRLQEFLQSRSCELPRYEVVDIQGEP 182

Query: 185 HDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKREGI 225
           H   F V  E+  L   ++G   S+R AEQVAAA  L   G+
Sbjct: 183 HCRTFFVECEVVLLNEKSRGQGVSRRIAEQVAAAAALIALGV 224


>gi|310779301|ref|YP_003967634.1| RNAse III [Ilyobacter polytropus DSM 2926]
 gi|309748624|gb|ADO83286.1| RNAse III [Ilyobacter polytropus DSM 2926]
          Length = 237

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 124/226 (54%), Gaps = 6/226 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISH---SYQE-SYERLEFLGDRILGLLISTLLFN 61
           +  LEK++ Y F ++ LL+ AL H S  +    Y++ + ERLE LGD +L L+++  L+ 
Sbjct: 6   FVELEKKLKYTFKSKKLLKHALIHRSYGNENWDYKKVNNERLELLGDAVLDLVVTEYLYL 65

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF S+ EG+L+   + +VS    ++++R+L + + + +S           +SI  DV E+
Sbjct: 66  HFTSSSEGDLAKLKSMIVSEPVLAKISRKLGVGNHLLLSKGEELTGGRDRSSILGDVFEA 125

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           ++ A+YLD    +A  F  K+ K+    +   +   D KT LQE++  ++ V P Y+V  
Sbjct: 126 ILGAVYLDSDFMLAKEFAIKHLKRFIDHIDENEDLIDFKTILQEFSQREYKVIPSYEVIK 185

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
             GPDH   F + V+I+      G   +K++AEQ AA    ++ G+
Sbjct: 186 EMGPDHRKSFEIAVKINDELMGLGTGRNKKSAEQSAARNACRKLGV 231


>gi|154249761|ref|YP_001410586.1| ribonuclease III [Fervidobacterium nodosum Rt17-B1]
 gi|154153697|gb|ABS60929.1| Ribonuclease III [Fervidobacterium nodosum Rt17-B1]
          Length = 239

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 122/226 (53%), Gaps = 14/226 (6%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE------SYERLEFLGDRILGLLISTLLFNH 62
           L++R+GY F N+ LL  AL HSS ++   +        ERLEFLGD ++ L++  +L+ +
Sbjct: 15  LQRRLGYTFKNQMLLFNALCHSSYAYELNQIGRDVQDNERLEFLGDAVVELVVCDILYRN 74

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +  + EG+++    ++ S E  +++A E++L  +I +     K      +SI AD  E+L
Sbjct: 75  YPDSSEGDMAKVKGAVASEEVLTELANEIELGKYIFLGKGEEKTGGRKRSSILADAFEAL 134

Query: 123 IAALYLDGGIE-VAGTFVDKYWKQ-RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            AA+YLDG +E V   F +K  ++     +G+   D KT LQE    +F   PEYK    
Sbjct: 135 CAAIYLDGNLESVVKVFGEKLKREIEIFYTGQRIFDYKTALQEITQERFKELPEYKTV-- 192

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA---EVLKRE 223
              D + +F V + I G   + G+  SK+ AE+ AA    E+L R+
Sbjct: 193 -KNDENGKFLVELYIQGKKISMGIGNSKKDAEKDAAKKAYEILTRD 237


>gi|116628032|ref|YP_820651.1| ribonuclease III [Streptococcus thermophilus LMD-9]
 gi|122267372|sp|Q03K17|RNC_STRTD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|116101309|gb|ABJ66455.1| RNAse III [Streptococcus thermophilus LMD-9]
 gi|312278628|gb|ADQ63285.1| Ribonuclease 3 [Streptococcus thermophilus ND03]
          Length = 229

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 111/222 (50%), Gaps = 7/222 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
           LE+  G  F+ + LLE A TH+S ++ ++       ERLEFLGD  L L+IS  L+N + 
Sbjct: 8   LEQDFGIVFSQKDLLETAFTHTSYANEHRLLNISHNERLEFLGDAALQLVISVYLYNRYP 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EGE+S   +++V  E+ +   +      +IR+     K       +I  D+ E+ + 
Sbjct: 68  NKPEGEMSKMRSTIVREESLAGFTKACGFEQYIRLGKGEEKSGGRERATILGDLWEAFLG 127

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182
           ALYLD G+     F+++    +  K G F R  D KT LQE       V   Y V   SG
Sbjct: 128 ALYLDQGLPAVEKFLNQVMIPQVEK-GNFDRVIDYKTALQERLQVNGKVDITYTVIDESG 186

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           P H   FT+ V + G   + G   SK+ AEQ AA   L++ G
Sbjct: 187 PAHAKEFTMQVAVDGKELSTGFGKSKKLAEQAAAKSALEQLG 228


>gi|332703537|ref|ZP_08423625.1| Ribonuclease 3 [Desulfovibrio africanus str. Walvis Bay]
 gi|332553686|gb|EGJ50730.1| Ribonuclease 3 [Desulfovibrio africanus str. Walvis Bay]
          Length = 233

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 112/221 (50%), Gaps = 5/221 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLIST 57
           M   R + ++  + Y F   + L +ALTHSS ++ ++   ES ERLEFLGD +L L IS 
Sbjct: 3   MDMDRLAAIQAELDYHFGQPAYLARALTHSSYANEHELALESNERLEFLGDAVLELAISE 62

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF  F  A EG+L+   + LV  +T +Q AR+L L   I +             S+ AD
Sbjct: 63  CLFQRFPMAHEGQLTRIRSRLVKEKTLAQRARDLGLDRLILLGRGEESQGGRDRDSVLAD 122

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEY 175
            +E+L+ A++LDGG   A  FV + ++    ++      +D KT LQE    +F + P Y
Sbjct: 123 ALEALLGAVFLDGGYLAAREFVSRTFQDLLPETADLPKVKDYKTRLQEITQQRFKIRPIY 182

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
                SGPDH   + V V +   A       S + AEQ AA
Sbjct: 183 AQLGTSGPDHARIYEVEVRLPEGASFAATGASLKRAEQNAA 223


>gi|222152723|ref|YP_002561900.1| ribonuclease III [Streptococcus uberis 0140J]
 gi|254807903|sp|B9DRH1|RNC_STRU0 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|222113536|emb|CAR41327.1| ribonuclease III [Streptococcus uberis 0140J]
          Length = 230

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/211 (35%), Positives = 112/211 (53%), Gaps = 7/211 (3%)

Query: 17  FANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           F +++LLE A TH+S ++ ++       ERLEFLGD +L L+IS  LF  +    EGELS
Sbjct: 16  FEDKTLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIISEYLFKKYPHKAEGELS 75

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
            + + +V  E+ +  +R      +I++     K       +I  D+ E+ + AL LD G+
Sbjct: 76  KQRSMIVREESLASFSRHCAFEPYIKLGKGEEKSGGRNRDTILGDLFEAFLGALLLDKGV 135

Query: 133 EVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           E    F+++    +  K G F +  D KT LQE   AK     +YKV   SGP H  +F 
Sbjct: 136 EEVRRFLNQVMIPQVEK-GNFEKVNDYKTSLQEILQAKGDTIIDYKVINESGPAHAKQFE 194

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           VVV  + +  ++G+  SK+ AEQ AA   LK
Sbjct: 195 VVVLANQVELSKGIGRSKKLAEQNAAENALK 225


>gi|328957311|ref|YP_004374697.1| ribonuclease III [Carnobacterium sp. 17-4]
 gi|328673635|gb|AEB29681.1| ribonuclease III [Carnobacterium sp. 17-4]
          Length = 245

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/220 (34%), Positives = 115/220 (52%), Gaps = 7/220 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62
           + L+ +    F + S LE+A THSS  + ++    +  ER+EFLGD +L L +S  L+  
Sbjct: 21  TQLKTKFDLVFHDLSYLEEAFTHSSYVNEHRNLELKDNERIEFLGDAVLELTVSRFLYEL 80

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           + +  EG+L+    ++V   + SQ A+E +   FIR+     +       ++  D+ ES 
Sbjct: 81  YPNLPEGKLTRLRATIVCEASLSQFAKEYEFDQFIRLGRGEERMNGRKRPALLCDLFESF 140

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180
           I ALYLD GI+   +F+D+    + +KSG F    D KT LQE+   K  +  +Y++   
Sbjct: 141 IGALYLDQGIDSVLSFLDQTIFPK-IKSGAFSHVMDHKTNLQEFLQQKGEIGIDYQLVDE 199

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            GP H   F V V   G    QG   +K+AAEQVAA   L
Sbjct: 200 IGPAHQKAFVVEVLAEGQVLGQGQGKTKKAAEQVAAENAL 239


>gi|282856664|ref|ZP_06265932.1| ribonuclease III [Pyramidobacter piscolens W5455]
 gi|282585513|gb|EFB90813.1| ribonuclease III [Pyramidobacter piscolens W5455]
          Length = 231

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/214 (38%), Positives = 115/214 (53%), Gaps = 9/214 (4%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLISTLLFNHFDSAK 67
           ++RIGY F++ +LLE+ALTHSS +H     +  ERLEFLGD +L +LIS  LF     A 
Sbjct: 16  QRRIGYEFSDPALLEEALTHSSYAHERGVPFWNERLEFLGDAVLEVLISEELFRARPDAS 75

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG+++    SLV  E  S     L L   + +    R      M     D VE+LI ALY
Sbjct: 76  EGQMTRERASLVREEVLSAWGHSLGLDGLLLLGMGQRGSASENMI---GDAVEALIGALY 132

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           LDGG+E A  F+++    R   + + + D K+ LQ     + G  P Y++  R GP+HDP
Sbjct: 133 LDGGLEQARAFLNR----RPRGAAREQLDPKSRLQILCQERNGPAPYYELLERKGPEHDP 188

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            F     + G   A+G   S++AAEQ AA   LK
Sbjct: 189 IFIARALLDGRELARGRGTSRKAAEQAAARAALK 222


>gi|253578969|ref|ZP_04856240.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849912|gb|EES77871.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 227

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/206 (36%), Positives = 106/206 (51%), Gaps = 7/206 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
           LE+ IGY F N+  L +ALTHSS ++  +     S ERLEFLGD +L L+ S  L+  F 
Sbjct: 8   LEEIIGYHFKNKHYLTQALTHSSYANEKKLGKLGSNERLEFLGDAVLELISSDYLYARFT 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGEL+ +  SLV   + +  ARE  L  F+ +             SI +D  E+L+ 
Sbjct: 68  QIPEGELTKKRASLVCEPSLAYCAREFGLPQFLLLGKGEDMTGGRNRDSIVSDATEALLG 127

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP-EYKVTFRSGP 183
           A+YLDGG   A  FV  +     ++  +   D+KT LQE      G  P EY +T   GP
Sbjct: 128 AIYLDGGFANAKEFVLNFI-LNDIEHKQLFYDSKTILQEIVQEN-GTQPVEYILTKEEGP 185

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKR 209
           DH+  FTV   ++G    QG   +K+
Sbjct: 186 DHNKNFTVEARVNGKVMGQGSGHTKK 211


>gi|110598670|ref|ZP_01386935.1| Ribonuclease III [Chlorobium ferrooxidans DSM 13031]
 gi|110339723|gb|EAT58233.1| Ribonuclease III [Chlorobium ferrooxidans DSM 13031]
          Length = 270

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/231 (34%), Positives = 116/231 (50%), Gaps = 15/231 (6%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-----ESYERLEFLGDRILGLLI 55
           +SA   + L + +G   +N  L + ALTH S+ H        ES +RLEFLGD +LGLLI
Sbjct: 31  LSAETIAYLRRLVGEPASNLLLYQTALTHRSVVHDPATQHLVESNQRLEFLGDSVLGLLI 90

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S  LF  F  + EGELS   + +V+ ++ +  A  ++LA ++       ++  +   S  
Sbjct: 91  SDYLFRTFPGSAEGELSSNRSKIVNRKSLAGFAASMNLADYLLTGESADRNKITSSDSAL 150

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR------RDAKTELQEWAHAKF 169
           AD  ESL  A+YLD GI  A  F+ K+     L+   FR       + K+ L E+  ++ 
Sbjct: 151 ADAFESLTGAIYLDKGILAAENFIRKH----VLEHENFRMIVEAEHNYKSRLIEYTQSRH 206

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
              P Y V    G +H+ +FTV V  S      G    K+ AEQ+AA E L
Sbjct: 207 LPMPVYSVLEECGAEHEKQFTVGVSCSDRHLGSGTARRKKDAEQLAAKEAL 257


>gi|295698532|ref|YP_003603187.1| ribonuclease III [Candidatus Riesia pediculicola USDA]
 gi|291157177|gb|ADD79622.1| ribonuclease III [Candidatus Riesia pediculicola USDA]
          Length = 227

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 119/223 (53%), Gaps = 12/223 (5%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L+K IGY F +   L ++LTH S + S+ E   RLEFLGD IL L+IS  L++ F S  E
Sbjct: 2   LQKNIGYRFNHLDFLYQSLTHRSTNLSHNE---RLEFLGDSILNLIISKFLYDEFLSKNE 58

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GE+S   ++LV   T S +A +L + SFI +     K+      SI ++ +E++I A++L
Sbjct: 59  GEMSRTRSNLVKEGTLSDIANQLGIGSFINLGLGEIKNHGFLKRSILSNALEAIIGAIFL 118

Query: 129 DGG--IEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           D G  I+     +  +++  A  +   +  +D KT+LQE         P+Y++    G D
Sbjct: 119 DSGSNIKTIENVIMNWYRNHADLINLSRDEKDPKTKLQEHLQKFHLPLPKYELLKSVGYD 178

Query: 185 HDPRFTVVVEISGLAPAQ-----GMDCSKRAAEQVAAAEVLKR 222
           H+ +FT+V ++ G   +      G     + AE++AA  +  +
Sbjct: 179 HEKQFTIVCKVFGFRKSDHFITIGTGKKYKEAEKLAAKHMFDK 221


>gi|157150981|ref|YP_001450082.1| ribonuclease III [Streptococcus gordonii str. Challis substr. CH1]
 gi|189043362|sp|A8AWC2|RNC_STRGC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|157075775|gb|ABV10458.1| Ribonuclease III (RNase III) [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 232

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/218 (33%), Positives = 113/218 (51%), Gaps = 7/218 (3%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           R G  F + SLLE A TH+S ++ ++       ERLEFLGD +L L+IS  LF  +    
Sbjct: 11  RFGLVFKDVSLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIISEYLFEKYPKRP 70

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG+L+   +++V  E+ +  +R+     FI++     K       +I  D+ E+ + AL 
Sbjct: 71  EGDLTKLRSTIVREESLAGFSRDCQFDRFIKLGKGEEKSGGRERETILGDLFEAFLGALL 130

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           LD G+EV   F+ +    + +++G F +  D KT+LQE   +   V   Y+V   SGP H
Sbjct: 131 LDKGLEVVKNFIYQVMIPK-VEAGDFEQVTDYKTKLQELLQSNGDVEILYQVVSESGPAH 189

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              F V V + G    +G   SK+ AEQ AA    ++E
Sbjct: 190 AKNFEVSVSVDGRLVGKGQGRSKKLAEQEAAKNAFEKE 227


>gi|154148336|ref|YP_001407136.1| ribonuclease III [Campylobacter hominis ATCC BAA-381]
 gi|153804345|gb|ABS51352.1| ribonuclease III [Campylobacter hominis ATCC BAA-381]
          Length = 223

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/206 (33%), Positives = 112/206 (54%), Gaps = 3/206 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +EK +GY F N + L+ ALTH S   +  ++ ERLEFLGD ++ L+++  L+  F   +E
Sbjct: 4   IEKILGYKFKNENHLKLALTHKSFKGA--QNNERLEFLGDAVMDLIVAEYLYEKFRHTQE 61

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    +LV+ ++ ++ AR+L +   + +S     +      SI +D  E++  A+YL
Sbjct: 62  GDLSKLRAALVNEKSFAKFARKLKIGENLFLSLGEEHNGGRKKDSILSDAFEAIFGAIYL 121

Query: 129 DGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           + G+EV  +   K  ++   +  K   +D KTELQE   A F +TP YK+   +GPDH  
Sbjct: 122 ESGLEVCKSLSIKILEEIFPQIDKSLYKDFKTELQEITQANFALTPTYKLLSATGPDHKK 181

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQ 213
            F + V       A     SK+ AEQ
Sbjct: 182 EFEMAVFFDDKKIAAAKGKSKKEAEQ 207


>gi|54310187|ref|YP_131207.1| ribonuclease III [Photobacterium profundum SS9]
 gi|81615006|sp|Q6LMS2|RNC_PHOPR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|46914628|emb|CAG21405.1| putative ribonuclease III [Photobacterium profundum SS9]
          Length = 224

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/204 (33%), Positives = 108/204 (52%), Gaps = 6/204 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L++R+GY F +  L+  +LTH S +  + E   RLEFLGD IL  +I+  L++ F    E
Sbjct: 8   LQRRLGYQFNSSELMTLSLTHRSANGKHNE---RLEFLGDSILSFVIADDLYHRFPHVDE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G++S    +LV  +T +++ RE +L  ++ +     K       SI AD VE++I A+YL
Sbjct: 65  GDMSRMRATLVRGKTLAELGREFELGDYLLLGPGELKSGGFRRDSILADCVEAIIGAIYL 124

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D   E     +  +++ R   ++ G  ++D KT LQE    +    P Y VT   G  H+
Sbjct: 125 DSDTEQVRKVILSWYQSRLETIQPGINQKDPKTRLQECLQGRRLALPAYTVTKVHGEAHN 184

Query: 187 PRFTVVVEISGL-APAQGMDCSKR 209
             FTV  E++GL  P  G   S+R
Sbjct: 185 QEFTVQCEVTGLDKPVIGKGSSRR 208


>gi|229588601|ref|YP_002870720.1| ribonuclease III [Pseudomonas fluorescens SBW25]
 gi|259491960|sp|C3K6Y7|RNC_PSEFS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|229360467|emb|CAY47324.1| ribonuclease III [Pseudomonas fluorescens SBW25]
          Length = 229

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/221 (38%), Positives = 116/221 (52%), Gaps = 8/221 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE+++GY F ++ L+  ALTH S +     + ERLEFLGD IL  +    LF  F  A+E
Sbjct: 8   LERQLGYTFKDQELMVLALTHRSFAGR---NNERLEFLGDAILNFVAGEALFERFPQARE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS     LV  ET + +AR   L  ++R+ S   K       SI AD +E+LI A+YL
Sbjct: 65  GQLSRLRARLVKGETLAVLARGFGLGEYLRLGSGELKSGGFRRESILADALEALIGAIYL 124

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           D G+E A   V   W    ++S       +D KT LQE+  ++    P Y+V    G  H
Sbjct: 125 DAGMEAAKERVTA-WLTSEIESLTLVDTNKDPKTRLQEFLQSRGCELPRYEVVDIQGEPH 183

Query: 186 DPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225
              F V  EI+ L   ++G   S+R AEQVAAA  L   G+
Sbjct: 184 CRVFFVECEITLLNEKSRGQGVSRRIAEQVAAAAALIALGV 224


>gi|22125197|ref|NP_668620.1| ribonuclease III [Yersinia pestis KIM 10]
 gi|45442304|ref|NP_993843.1| ribonuclease III [Yersinia pestis biovar Microtus str. 91001]
 gi|51597206|ref|YP_071397.1| ribonuclease III [Yersinia pseudotuberculosis IP 32953]
 gi|108808446|ref|YP_652362.1| ribonuclease III [Yersinia pestis Antiqua]
 gi|108811369|ref|YP_647136.1| ribonuclease III [Yersinia pestis Nepal516]
 gi|145598837|ref|YP_001162913.1| ribonuclease III [Yersinia pestis Pestoides F]
 gi|149365390|ref|ZP_01887425.1| ribonuclease III [Yersinia pestis CA88-4125]
 gi|153949383|ref|YP_001400117.1| ribonuclease III [Yersinia pseudotuberculosis IP 31758]
 gi|162419239|ref|YP_001607935.1| ribonuclease III [Yersinia pestis Angola]
 gi|165925157|ref|ZP_02220989.1| ribonuclease III [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165937011|ref|ZP_02225576.1| ribonuclease III [Yersinia pestis biovar Orientalis str. IP275]
 gi|166008358|ref|ZP_02229256.1| ribonuclease III [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166212532|ref|ZP_02238567.1| ribonuclease III [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167399049|ref|ZP_02304573.1| ribonuclease III [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167421411|ref|ZP_02313164.1| ribonuclease III [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167423187|ref|ZP_02314940.1| ribonuclease III [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|218929790|ref|YP_002347665.1| ribonuclease III [Yersinia pestis CO92]
 gi|229838281|ref|ZP_04458440.1| RNase III [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229895523|ref|ZP_04510694.1| RNase III [Yersinia pestis Pestoides A]
 gi|229898845|ref|ZP_04513990.1| RNase III [Yersinia pestis biovar Orientalis str. India 195]
 gi|229901619|ref|ZP_04516741.1| RNase III [Yersinia pestis Nepal516]
 gi|270489808|ref|ZP_06206882.1| ribonuclease III [Yersinia pestis KIM D27]
 gi|284988625|ref|YP_001719940.2| ribonuclease III [Yersinia pseudotuberculosis YPIII]
 gi|284988628|ref|YP_001873415.2| ribonuclease III [Yersinia pseudotuberculosis PB1/+]
 gi|22654064|sp|Q8ZD72|RNC_YERPE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|73917588|sp|Q667V1|RNC_YERPS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|122980240|sp|Q1CKE4|RNC_YERPN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|123372250|sp|Q1C555|RNC_YERPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043377|sp|A7FFT9|RNC_YERP3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043378|sp|A4TKX8|RNC_YERPP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|238687295|sp|A9R402|RNC_YERPG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|21958062|gb|AAM84871.1|AE013732_3 RNase III, ds RNA [Yersinia pestis KIM 10]
 gi|45437168|gb|AAS62720.1| ribonuclease III [Yersinia pestis biovar Microtus str. 91001]
 gi|51590488|emb|CAH22128.1| ribonuclease III [Yersinia pseudotuberculosis IP 32953]
 gi|108775017|gb|ABG17536.1| RNAse III [Yersinia pestis Nepal516]
 gi|108780359|gb|ABG14417.1| RNAse III [Yersinia pestis Antiqua]
 gi|115348401|emb|CAL21337.1| ribonuclease III [Yersinia pestis CO92]
 gi|145210533|gb|ABP39940.1| RNAse III [Yersinia pestis Pestoides F]
 gi|149291803|gb|EDM41877.1| ribonuclease III [Yersinia pestis CA88-4125]
 gi|152960878|gb|ABS48339.1| ribonuclease III [Yersinia pseudotuberculosis IP 31758]
 gi|162352054|gb|ABX86002.1| ribonuclease III [Yersinia pestis Angola]
 gi|165914874|gb|EDR33486.1| ribonuclease III [Yersinia pestis biovar Orientalis str. IP275]
 gi|165922764|gb|EDR39915.1| ribonuclease III [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165992740|gb|EDR45041.1| ribonuclease III [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166206463|gb|EDR50943.1| ribonuclease III [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166960900|gb|EDR56921.1| ribonuclease III [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167051553|gb|EDR62961.1| ribonuclease III [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167057357|gb|EDR67103.1| ribonuclease III [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|229681548|gb|EEO77642.1| RNase III [Yersinia pestis Nepal516]
 gi|229688393|gb|EEO80464.1| RNase III [Yersinia pestis biovar Orientalis str. India 195]
 gi|229694647|gb|EEO84694.1| RNase III [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229701329|gb|EEO89357.1| RNase III [Yersinia pestis Pestoides A]
 gi|270338312|gb|EFA49089.1| ribonuclease III [Yersinia pestis KIM D27]
 gi|320016075|gb|ADV99646.1| RNase III [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 226

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 119/225 (52%), Gaps = 6/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F  + LL +ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFQQQELLLQALTHRSASSKHNE---RLEFLGDSILSFVIANELY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  RRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I      + +++  R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSDIHTIERLILEWYHSRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222
              G  HD  FT+  ++SGL  P  G   S+R AEQ AA + LK+
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLNEPVIGTGSSRRKAEQAAAEQALKQ 222


>gi|169335334|ref|ZP_02862527.1| hypothetical protein ANASTE_01746 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258072|gb|EDS72038.1| hypothetical protein ANASTE_01746 [Anaerofustis stercorihominis DSM
           17244]
          Length = 227

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/220 (34%), Positives = 115/220 (52%), Gaps = 8/220 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE+++GY F ++ L++ ALTHSS S+  +  ++ ERLEFLGD +L L +   L+      
Sbjct: 6   LEQKLGYEFKDKELIKVALTHSSKSNENKTLQNNERLEFLGDAVLDLCVGAYLYKTLPGK 65

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           KEG L+     +V A++    + +LDL  FI +          +  +I AD  E+++ A+
Sbjct: 66  KEGVLTKLRALIVCADSLFSASDKLDLGEFIMLGKGEMHSGGKYKKNIIADCFEAVLGAI 125

Query: 127 YLDGGIE----VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           YLD   E    +A T +    K+    SG    D KT LQE+ H+K      Y++    G
Sbjct: 126 YLDSDYEKVSTIALTLLSDVIKKAI--SGNLTYDYKTLLQEYIHSKNIKDFSYELVQIKG 183

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           P+HD  FT  V I+     QG   +K+ +EQ AA   LK+
Sbjct: 184 PEHDQIFTSKVIINNKDMGQGEGKNKKESEQHAALNTLKK 223


>gi|311068114|ref|YP_003973037.1| ribonuclease III [Bacillus atrophaeus 1942]
 gi|310868631|gb|ADP32106.1| ribonuclease III [Bacillus atrophaeus 1942]
          Length = 249

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 111/224 (49%), Gaps = 7/224 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++   ++RI   F N  LL +A THSS  + ++    E  ERLEFLGD +L L IS  LF
Sbjct: 19  QFKEFQERISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLF 78

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             + +  EG+L+    ++V   +   +A EL     + +             ++ ADV E
Sbjct: 79  AKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFE 138

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178
           + I ALYLD G+E   +F+  Y   + +  G F    D K++LQE+       T EYK+ 
Sbjct: 139 AFIGALYLDQGLEPVESFLKVYVFPK-INDGAFSHVMDFKSQLQEFVQRDGKGTLEYKIQ 197

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              GP H+  F  +V + G A   G   SK+ AEQ AA E L +
Sbjct: 198 NEKGPAHNREFEAIVSLKGEALGIGNGRSKKEAEQHAAQEALAK 241


>gi|85860141|ref|YP_462343.1| ribonuclease III [Syntrophus aciditrophicus SB]
 gi|85723232|gb|ABC78175.1| ribonuclease III [Syntrophus aciditrophicus SB]
          Length = 240

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/219 (34%), Positives = 117/219 (53%), Gaps = 8/219 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSS-ISHSYQESY---ERLEFLGDRILGLLISTLLFNHFD 64
           LE  +  AF + +LL+ AL H S ++ +   S+   ERLEFLGD +L L IS LL   F 
Sbjct: 12  LESHLSCAFRDITLLDNALVHRSYVNENPSLSFADNERLEFLGDAVLELCISDLLMKAFP 71

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+LS    S+V+ +  +++A++  + SFI +             SI A+ +E++ A
Sbjct: 72  DYSEGQLSKLRASVVNEQPLAELAKKCRIGSFILLGKGEESSGGRSKPSILANTMEAITA 131

Query: 125 ALYLDGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           A++LDGG + A  FV + +    +   +S  ++ D KT LQE +  +F   P Y++    
Sbjct: 132 AVFLDGGFDRAYEFVRRLFTPLIEEGNRSATYK-DYKTTLQELSQNRFREIPRYRLIGEY 190

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           GPDHD  F   + I G+    G   SK+ AEQ AA + L
Sbjct: 191 GPDHDKLFESGLSIPGIIETTGKGKSKKEAEQHAAHKAL 229


>gi|257466297|ref|ZP_05630608.1| ribonuclease III [Fusobacterium gonidiaformans ATCC 25563]
          Length = 232

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 119/226 (52%), Gaps = 10/226 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           LE RI Y F +++LL+ AL H S  + ++     + E+LE LGD +LGL+++  L+  + 
Sbjct: 8   LEHRINYYFNDKNLLKNALIHRSFGNEHKHYKNINNEKLELLGDAVLGLVVAEYLYQKYP 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             KEG L+   +  VS    + ++R+L +  ++ +S            SI  DV E+++ 
Sbjct: 68  EEKEGVLAKIKSMAVSEPVLASISRKLRIGEYLLLSKGEMVTGGRDRNSILGDVFEAILG 127

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YLD G   A  +V  + K        F    D KT LQE+   K+   P+Y +    G
Sbjct: 128 AIYLDSGFFAAKEYVLFHLKDMIDHIDDFEEILDFKTILQEYCQKKYRDIPKYTLVGEEG 187

Query: 183 PDHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLKREGI-W 226
           PDH   F + V+I + +A A+G   +K+ AEQ+AA ++ K  G+ W
Sbjct: 188 PDHRKLFEMQVQIQNNIAKAKG--TNKKVAEQMAAKQLCKELGVKW 231


>gi|329121261|ref|ZP_08249888.1| ribonuclease III [Dialister micraerophilus DSM 19965]
 gi|327470195|gb|EGF15658.1| ribonuclease III [Dialister micraerophilus DSM 19965]
          Length = 239

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/210 (34%), Positives = 106/210 (50%), Gaps = 6/210 (2%)

Query: 19  NRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
           N  LL  ALTH+S ++ ++++     ERLEFLGD +L L++   LF  +    EGEL+  
Sbjct: 22  NHELLNIALTHTSYANEHKKNKEHDNERLEFLGDAVLDLIVGEYLFRKYPLWSEGELTKA 81

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
             S V    C++++  L++  ++ +     K       SI  D  ESLI A+YLD G EV
Sbjct: 82  KASAVCKPACAEISTRLNVGKYLLLGKGEEKSGGRTRVSILGDAFESLIGAIYLDIGYEV 141

Query: 135 AGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
              FV K+ ++    +  G + +D KT+LQE       V   Y V    GPDHD    + 
Sbjct: 142 TFDFVIKHLEKFLDLIMQGDYDKDYKTDLQEILQQNGDVEICYNVIHDEGPDHDKTIWMS 201

Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           V   G     G+  SK+ A Q AA E ++R
Sbjct: 202 VTADGKYLGSGIGKSKKQAAQRAAKEAIER 231


>gi|225374436|ref|ZP_03751657.1| hypothetical protein ROSEINA2194_00051 [Roseburia inulinivorans DSM
           16841]
 gi|225213674|gb|EEG96028.1| hypothetical protein ROSEINA2194_00051 [Roseburia inulinivorans DSM
           16841]
          Length = 230

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/205 (33%), Positives = 103/205 (50%), Gaps = 5/205 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
           L+ +IGY F    LL +ALTHSS ++          ERLEFLGD +L ++ S  L+  + 
Sbjct: 7   LQDKIGYEFKQEKLLRQALTHSSFANEKHLRKHSDNERLEFLGDAVLEIVSSDFLYKAYP 66

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+L+    SLV   T +   RE++L  ++ +             SI +D +E++I 
Sbjct: 67  DKSEGDLTKLRASLVCEPTLAICTREMELGKYLFLGKGENLTGGRNRNSILSDALEAVIG 126

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A+YLDGG E A TF+ K+     ++  K   D KT LQE     +     Y++    GPD
Sbjct: 127 AIYLDGGFEHAKTFIHKFI-LTDIEHKKLFYDCKTSLQEVVQGHYEEELNYRLISEEGPD 185

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKR 209
           HD RF+V   I       G+  +K+
Sbjct: 186 HDKRFSVEARIGERVIGTGIGHTKK 210


>gi|322436776|ref|YP_004218988.1| ribonuclease III [Acidobacterium sp. MP5ACTX9]
 gi|321164503|gb|ADW70208.1| ribonuclease III [Acidobacterium sp. MP5ACTX9]
          Length = 268

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/231 (35%), Positives = 120/231 (51%), Gaps = 26/231 (11%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES------------YERLEFLGDRILGLLIS 56
           LE  +G+ FA  +LL  ALTH S  +   ++             E+LEF+GD  LGLL +
Sbjct: 19  LETLLGHRFARPNLLTLALTHRSFVYDSGQTAPENDLADPARDNEQLEFVGDAALGLLAA 78

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L   F +++EGEL+    S+VS +   +V   LDL  ++R+     K+      ++ A
Sbjct: 79  ESLCRRFPASREGELTRLRASIVSRKHLGEVGTRLDLGRWLRLGHTAEKNDGRRNAALFA 138

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-----GKFRR------DAKTELQEWA 165
           + VE+LIAALYLDGG+EVA  FV+      A+ +     G+  R      D K+ LQE  
Sbjct: 139 NAVEALIAALYLDGGLEVARRFVEDEIVSPAIPALEQSLGEGERFAGAVGDHKSALQEML 198

Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL---APAQGMDCSKRAAEQ 213
            A+    PEY++   SGPDH   F+V V I G    A AQ    +K+ A+Q
Sbjct: 199 QAEGLGRPEYRLIAESGPDHKRLFSVEVLIEGPDSEAIAQAEGPTKKQAQQ 249


>gi|255019675|ref|ZP_05291754.1| Ribonuclease III [Acidithiobacillus caldus ATCC 51756]
 gi|254970898|gb|EET28381.1| Ribonuclease III [Acidithiobacillus caldus ATCC 51756]
          Length = 232

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/218 (36%), Positives = 109/218 (50%), Gaps = 9/218 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L++ IGY F +  LL +ALTH S    + E   RLEFLGD  L  +++  L+  F    E
Sbjct: 7   LQQAIGYVFQDEVLLRQALTHRSAGAQHNE---RLEFLGDAALNFVVAAELYARFPKVSE 63

Query: 69  GELSVRFNSLVSAETCSQVARELDLA-SFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           G LS     LV  ET +QVA E+ LA S I    +LR    +   SI+AD +E++I A Y
Sbjct: 64  GNLSRMRARLVREETLAQVAGEIALADSLILGPGELRSG-GARRDSIRADALEAIIGAAY 122

Query: 128 LDGGIEVAGTFVDKY---WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           LDGG   A   V +        AL   +  RD KT LQE+   +    P Y +    G  
Sbjct: 123 LDGGFAAAQGIVRQLIVPLMTEALGDEEL-RDPKTRLQEFLQGQGKPLPSYSLVEEKGQA 181

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           H+ RF     + G+        S+R AEQ AA ++L++
Sbjct: 182 HERRFVARCSVQGVPATDAEAGSRRKAEQQAAQQMLEQ 219


>gi|15639796|ref|NP_219246.1| ribonuclease III (rnc) [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189026034|ref|YP_001933806.1| ribonuclease III [Treponema pallidum subsp. pallidum SS14]
 gi|6094109|sp|O83787|RNC_TREPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|238689343|sp|B2S448|RNC_TREPS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|3323122|gb|AAC65778.1| ribonuclease III (rnc) [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189018609|gb|ACD71227.1| ribonuclease III [Treponema pallidum subsp. pallidum SS14]
 gi|291060165|gb|ADD72900.1| ribonuclease III [Treponema pallidum subsp. pallidum str. Chicago]
          Length = 254

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/215 (32%), Positives = 109/215 (50%), Gaps = 7/215 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSI-----SHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           L++ +G  F + + L++AL+H S+      H      ER+EFLGD +LG + +  L+   
Sbjct: 27  LQETLGVKFRDPTALDQALSHRSLFSSKEDHCGVRHNERMEFLGDAVLGAVAAACLYRAL 86

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             + EG+L+     LVS +T S +A  L +  ++ +             +I AD  E++I
Sbjct: 87  PDSHEGDLAKTKAVLVSTDTLSDIALSLRIDHYLLLGKGEELSGGRHKKAILADATEAVI 146

Query: 124 AALYLDGGIEVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            AL+LD G + A  FV +    + R ++      D K+ LQ  AH ++   PEY V  R+
Sbjct: 147 GALFLDSGFKAAERFVLRLLLPRVRPIREKNLHHDYKSTLQVLAHQRYRSKPEYTVVKRT 206

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           GPDH  RF V V +       G   SK++AEQ AA
Sbjct: 207 GPDHSVRFWVDVTVGDARFGPGYGTSKKSAEQCAA 241


>gi|313892546|ref|ZP_07826133.1| ribonuclease III [Dialister microaerophilus UPII 345-E]
 gi|313118943|gb|EFR42148.1| ribonuclease III [Dialister microaerophilus UPII 345-E]
          Length = 239

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/210 (34%), Positives = 106/210 (50%), Gaps = 6/210 (2%)

Query: 19  NRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
           N  LL  ALTH+S ++ ++++     ERLEFLGD +L L++   LF  +    EGEL+  
Sbjct: 22  NHELLNIALTHTSYANEHKKNKEHDNERLEFLGDAVLDLIVGEYLFRKYPLWSEGELTKA 81

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
             S V    C++++  L++  ++ +     K       SI  D  ESLI A+YLD G EV
Sbjct: 82  KASAVCKPACAEISTRLNVGKYLLLGKGEEKSGGRTRVSILGDAFESLIGAIYLDIGYEV 141

Query: 135 AGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
              FV K+ ++    +  G + +D KT+LQE       V   Y V    GPDHD    + 
Sbjct: 142 TFDFVIKHLEKFLDLIMQGDYDKDYKTDLQEILQQNGDVEICYNVIHDEGPDHDKTIWMS 201

Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           V   G     G+  SK+ A Q AA E ++R
Sbjct: 202 VTADGKYLGSGIGKSKKQAAQRAAKEAIER 231


>gi|291522183|emb|CBK80476.1| RNAse III [Coprococcus catus GD/7]
          Length = 233

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/212 (33%), Positives = 114/212 (53%), Gaps = 5/212 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
           L+++I Y F + +LL  ALTHSS ++ ++       ERLEFLGD +L ++ S  LF +F 
Sbjct: 10  LQQKIDYQFKDENLLFTALTHSSYANEHKLHKIHHNERLEFLGDAVLEVVSSDFLFKNFP 69

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG++S +  SLV   T +  AR++ L  ++ +             SI +D +E++I 
Sbjct: 70  DMAEGQMSKKRASLVCEPTLAYCARQIGLGKYLMLGKGEDMGGGRNRDSILSDALEAVIG 129

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           ++YLDGGIE AG+F+  +          F +D+KT LQE           Y+V   +GP+
Sbjct: 130 SIYLDGGIEQAGSFIMTHVLNDIEHKAMF-QDSKTILQELLQKDHKDPITYEVVDMTGPE 188

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           H+  F + V++      +G   +K+AA Q AA
Sbjct: 189 HNRMFVMQVKLGDRVIGKGSGRTKQAAGQEAA 220


>gi|159029006|emb|CAO87467.1| rnc [Microcystis aeruginosa PCC 7806]
          Length = 226

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/216 (33%), Positives = 105/216 (48%), Gaps = 11/216 (5%)

Query: 17  FANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           F N  LL +ALTH S  +      E+ ERLEFLGD IL  L+  LL+  + +  E EL+ 
Sbjct: 7   FQNALLLTQALTHRSYVNEQSELTENNERLEFLGDAILAFLVGELLYQKYPAMNEAELTR 66

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
             ++LV  E  +Q+  E+ L   +R+     KD      ++ AD  E++I A YLD G+ 
Sbjct: 67  LRSNLVKEEQLAQLGIEIGLGELMRLGKGAIKDRGRSNPTLLADTFEAIIGAYYLDSGLN 126

Query: 134 VAGTF-------VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
               +       V  +   +  +S  F  DAK   Q+WA A F   PEY +   +GP H 
Sbjct: 127 AVKNYLHGLFIPVASHLVSQQSESPSF-IDAKNLFQQWALANFASNPEYAIIDVTGPPHA 185

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             FT  V ++ L    G    K+ A + AA + LKR
Sbjct: 186 REFTAEVRVNNLLYGTGKGKRKQDATKAAAEDALKR 221


>gi|123441363|ref|YP_001005350.1| ribonuclease III [Yersinia enterocolitica subsp. enterocolitica
           8081]
 gi|189043376|sp|A1JKK3|RNC_YERE8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|122088324|emb|CAL11115.1| ribonuclease III [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 226

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 118/225 (52%), Gaps = 6/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F  + LL +ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFQQQELLLQALTHRSASSKHNE---RLEFLGDSILSFVIANELY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  RRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I      +  ++  R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGIFLDSDIHTIERLILAWYHSRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222
              G  HD  FT+  ++SGL  P  G   S+R AEQ AA + LK+
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLNEPVIGTGSSRRKAEQAAAEQALKQ 222


>gi|332162691|ref|YP_004299268.1| ribonuclease III [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|33332418|gb|AAQ11416.1| ribonuclease III [Yersinia enterocolitica]
 gi|318606796|emb|CBY28294.1| ribonuclease III [Yersinia enterocolitica subsp. palearctica Y11]
 gi|325666921|gb|ADZ43565.1| ribonuclease III [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 226

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 118/225 (52%), Gaps = 6/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F  + LL +ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFQQQDLLLQALTHRSASSKHNE---RLEFLGDSILSFVIANELY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  RRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I      +  ++  R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGIFLDSDIHTIERLILAWYHSRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222
              G  HD  FT+  ++SGL  P  G   S+R AEQ AA + LK+
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLNEPVIGTGSSRRKAEQAAAEQALKQ 222


>gi|315917454|ref|ZP_07913694.1| ribonuclease III [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691329|gb|EFS28164.1| ribonuclease III [Fusobacterium gonidiaformans ATCC 25563]
          Length = 235

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 119/226 (52%), Gaps = 10/226 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           LE RI Y F +++LL+ AL H S  + ++     + E+LE LGD +LGL+++  L+  + 
Sbjct: 11  LEHRINYYFNDKNLLKNALIHRSFGNEHKHYKNINNEKLELLGDAVLGLVVAEYLYQKYP 70

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             KEG L+   +  VS    + ++R+L +  ++ +S            SI  DV E+++ 
Sbjct: 71  EEKEGVLAKIKSMAVSEPVLASISRKLRIGEYLLLSKGEMVTGGRDRNSILGDVFEAILG 130

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YLD G   A  +V  + K        F    D KT LQE+   K+   P+Y +    G
Sbjct: 131 AIYLDSGFFAAKEYVLFHLKDMIDHIDDFEEILDFKTILQEYCQKKYRDIPKYTLVGEEG 190

Query: 183 PDHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLKREGI-W 226
           PDH   F + V+I + +A A+G   +K+ AEQ+AA ++ K  G+ W
Sbjct: 191 PDHRKLFEMQVQIQNNIAKAKG--TNKKVAEQMAAKQLCKELGVKW 234


>gi|305674324|ref|YP_003865996.1| ribonuclease III [Bacillus subtilis subsp. spizizenii str. W23]
 gi|305412568|gb|ADM37687.1| ribonuclease III [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 249

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 111/224 (49%), Gaps = 7/224 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++   ++RI   F N  LL +A THSS  + ++    E  ERLEFLGD +L L IS  LF
Sbjct: 19  QFKEFQERISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISRFLF 78

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             + +  EG+L+    ++V   +   +A EL     + +             ++ ADV E
Sbjct: 79  AKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFE 138

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178
           + I ALYLD G+E   +F+  Y   + +  G F    D K++LQE+       + EYK+T
Sbjct: 139 AFIGALYLDQGLEPVESFLKVYVFPK-INDGAFSHVMDFKSQLQEYVQRDGKGSLEYKIT 197

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              GP H+  F  +V + G     G   SK+ AEQ AA E L +
Sbjct: 198 NEKGPAHNREFEAIVSLKGEPLGVGNGRSKKEAEQHAAQEALAK 241


>gi|210633204|ref|ZP_03297720.1| hypothetical protein COLSTE_01633 [Collinsella stercoris DSM 13279]
 gi|210159209|gb|EEA90180.1| hypothetical protein COLSTE_01633 [Collinsella stercoris DSM 13279]
          Length = 241

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/182 (39%), Positives = 94/182 (51%), Gaps = 3/182 (1%)

Query: 14  GYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71
           G AF + SLL  A+TH S         SYERLEFLGD ILG +++  LF  +    EG+L
Sbjct: 15  GRAFNDTSLLRSAITHPSAVEGEPVSASYERLEFLGDSILGSVVALSLFKTYGDFDEGKL 74

Query: 72  SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131
           +    SLVS  T S V REL +   I + +  +      M S   +V E+L+ ALYLDGG
Sbjct: 75  TRLKVSLVSGATLSDVGRELGIDQVIILGASEQGTGARGMHSALENVYEALVGALYLDGG 134

Query: 132 IEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
            E A  F+ +  K   A +  +   + K+ LQE   +     P YKV    GP H+P FT
Sbjct: 135 WEAAEAFIMRTLKPHLATERAEHPSNPKSFLQECVQSDHMEAPSYKVVGEEGPAHEPTFT 194

Query: 191 VV 192
            V
Sbjct: 195 AV 196


>gi|52424423|ref|YP_087560.1| ribonuclease III [Mannheimia succiniciproducens MBEL55E]
 gi|81387548|sp|Q65VN5|RNC_MANSM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|52306475|gb|AAU36975.1| Rnc protein [Mannheimia succiniciproducens MBEL55E]
          Length = 224

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/216 (34%), Positives = 113/216 (52%), Gaps = 8/216 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L+++I Y F + +LL++ALTH S +  + E   RLEFLGD IL   I+  L++ F    E
Sbjct: 7   LQRQISYEFKDITLLKQALTHRSAATKHNE---RLEFLGDAILNYTIADALYHQFPKCNE 63

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELS    +LV   T + +AR+  L  ++ +     K       SI AD VE++I A+ L
Sbjct: 64  GELSRMRATLVREPTLAILARQFKLGEYMALGHGELKSGGFRRESILADCVEAIIGAISL 123

Query: 129 DGGIEVAGTFVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           D  + V+ T +  +W +   R +K G+ ++D KT LQE+        P Y V    G  H
Sbjct: 124 DSSL-VSATQITLHWYEKLLREIKPGENQKDPKTRLQEYLQGHRLALPTYDVKDIKGEAH 182

Query: 186 DPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVL 220
              FT+   +  L     G+  S+R AEQ AA ++L
Sbjct: 183 CQTFTIECHVPNLDRTFIGVGSSRRKAEQAAAEQIL 218


>gi|225419776|ref|ZP_03762079.1| hypothetical protein CLOSTASPAR_06114 [Clostridium asparagiforme
           DSM 15981]
 gi|225041580|gb|EEG51826.1| hypothetical protein CLOSTASPAR_06114 [Clostridium asparagiforme
           DSM 15981]
          Length = 232

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/212 (32%), Positives = 112/212 (52%), Gaps = 5/212 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESY----ERLEFLGDRILGLLISTLLFNHFD 64
           LE+ I Y F    L  +ALTHSS ++ ++ ++    ERLEFLGD +L ++ S  L++ ++
Sbjct: 8   LERTICYQFKEHGLFVQALTHSSYANEHRWNHSRCNERLEFLGDAVLEIVTSDFLYHKYE 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+L+    S+V   T +  A ++ L  ++ +             S+ +D +E+LI 
Sbjct: 68  DLPEGDLTKIRASIVCEPTLAYCAGDISLGEYLLLGKGEEATGGRSRNSVVSDAMEALIG 127

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A+YLDGG   A  F+ ++     ++  +   D+KT LQE   ++      Y++    GPD
Sbjct: 128 AIYLDGGFANAKEFIHRFILND-IEHKQLFYDSKTILQEMVQSRSSEGLSYEILREEGPD 186

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           H+  F V   I G    +G   +K+AAEQVAA
Sbjct: 187 HNKSFEVCARIGGAEIGRGTGRTKKAAEQVAA 218


>gi|257452427|ref|ZP_05617726.1| ribonuclease III [Fusobacterium sp. 3_1_5R]
          Length = 232

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 118/224 (52%), Gaps = 9/224 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           LE RI Y F +++LL+ AL H S  + ++     + E+LE LGD +LGL+++  L+  + 
Sbjct: 8   LEHRINYYFNDKNLLKNALIHRSFGNEHKHYKNINNEKLELLGDAVLGLVVAEYLYQKYP 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             KEG L+   +  VS    + ++R+L +  ++ +S            SI  DV E+++ 
Sbjct: 68  EEKEGVLAKIKSMAVSEPVLASISRKLRIGEYLLLSKGEMVTGGRDRNSILGDVFEAILG 127

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YLD G   A  +V  + K        F    D KT LQE+   K+   P+Y +    G
Sbjct: 128 AIYLDSGFFAAKEYVLFHLKDMIDHIDDFEEILDFKTILQEYCQKKYRDIPKYTLVGEEG 187

Query: 183 PDHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           PDH   F + V+I + +A A+G   +K+ AEQ+AA ++ K  G+
Sbjct: 188 PDHRKLFEMQVQIQNNIAKAKG--TNKKIAEQMAAKQLCKELGV 229


>gi|260892849|ref|YP_003238946.1| ribonuclease III [Ammonifex degensii KC4]
 gi|260864990|gb|ACX52096.1| ribonuclease III [Ammonifex degensii KC4]
          Length = 235

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/219 (35%), Positives = 112/219 (51%), Gaps = 10/219 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           + L+ ++G ++    LL  ALTH S +  H   E  +RLEFLGD +L L++S  L+  F 
Sbjct: 4   AKLKDKLGISWKEEKLLRLALTHPSYAYEHPGVEHNQRLEFLGDSVLSLVVSDYLYRTFP 63

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGEL+    ++V   + ++VA EL +   + +     K       S+ AD  E+L+ 
Sbjct: 64  EKSEGELTRLRAAVVCEASLARVAEELGIGEALLLGRGEEKSGGRKRPSLLADAFEALLG 123

Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPE---YKVTF 179
           A+YLD G+EVA  F     +   + +  G+  RD KTELQE        +PE   Y+V  
Sbjct: 124 AIYLDQGLEVASAFALHLLRPVLQDVLEGRVERDYKTELQELLQKG---SPEKIVYEVLQ 180

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
             GPDH  RF V V   G    +G   SK+ AEQ AA E
Sbjct: 181 EEGPDHAKRFLVGVYYQGKCLGRGEGRSKKEAEQRAARE 219


>gi|183221945|ref|YP_001839941.1| ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
 gi|189912013|ref|YP_001963568.1| ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167776689|gb|ABZ94990.1| Ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167780367|gb|ABZ98665.1| Ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 242

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/212 (33%), Positives = 111/212 (52%), Gaps = 7/212 (3%)

Query: 16  AFANRSLLEKALTHSSISHSYQESY----ERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71
           +F + SLL  A  H S ++   + Y    ERLEFLGD +LG+L +  L+      KEG L
Sbjct: 27  SFKDISLLHLAFVHRSFANEDSDRYLSDNERLEFLGDSVLGILAAEYLYKSLPKGKEGIL 86

Query: 72  SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131
           +   + +VSA   +++AR      F+ +     K+      ++QAD  E+ + ALYLD G
Sbjct: 87  AKLKSKMVSAPAIAKLARFYRFPDFLLLGKG-EKEKGEANLNLQADCFEAFLGALYLDQG 145

Query: 132 IEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
           +     F+  +++  ++ ++S +  +D KT LQE+   K+   PEY +    GPDHD  F
Sbjct: 146 LNSCRIFLTPHFQTMEKGVESAEETKDYKTILQEYCQKKWKKLPEYILLKEEGPDHDKDF 205

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +V V       + G   +KR AEQ+AA   L+
Sbjct: 206 SVSVSCENYFQSNGDGKNKRRAEQMAAKAALR 237


>gi|332284936|ref|YP_004416847.1| hypothetical protein PT7_1683 [Pusillimonas sp. T7-7]
 gi|330428889|gb|AEC20223.1| hypothetical protein PT7_1683 [Pusillimonas sp. T7-7]
          Length = 252

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/213 (35%), Positives = 111/213 (52%), Gaps = 6/213 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           +TL+  + Y F + SLLE+ALTH S S  + E   RLEFLGD +L  ++++LLF  F   
Sbjct: 5   NTLQAALDYQFGDASLLEQALTHRSHSGPHNE---RLEFLGDSVLNFVVASLLFVRFPKI 61

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+LS    +LV     + +A  L+L+ ++R+     K       SI AD +E+L AA+
Sbjct: 62  DEGDLSRLRANLVKQAALADIAGRLNLSQYLRLGEGELKSGGFRRPSILADALEALFAAV 121

Query: 127 YLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLDGG + A   + + ++     + +    +D KT LQE   A+    P Y V    G  
Sbjct: 122 YLDGGFDAAQQVIQRQYETILDNVDAKTLGKDPKTLLQELLQARKLDLPAYTVVATHGAA 181

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAA 216
           H+  F V  +I  L         S+RAAEQ AA
Sbjct: 182 HNQLFEVECQIPVLDIKVSAGGASRRAAEQSAA 214


>gi|90412086|ref|ZP_01220093.1| ribonuclease III [Photobacterium profundum 3TCK]
 gi|90327064|gb|EAS43443.1| ribonuclease III [Photobacterium profundum 3TCK]
          Length = 224

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/204 (33%), Positives = 109/204 (53%), Gaps = 6/204 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L++++GY F +  L+  +LTH S + ++ E   RLEFLGD IL  +I+  L++ F    E
Sbjct: 8   LQRKLGYQFNSTELMTLSLTHRSANGTHNE---RLEFLGDSILSFVIADDLYHRFPHVDE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G++S    +LV  +T +++ RE +L  ++ +     K       SI AD VE++I A+YL
Sbjct: 65  GDMSRMRATLVRGKTLAELGREFELGDYLLLGPGELKSGGFRRDSILADCVEAIIGAIYL 124

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D   E     +  +++ R   ++ G  ++D KT LQE    +    P Y VT   G  H+
Sbjct: 125 DSDTEQVRKVILSWYQSRLETIQPGINQKDPKTRLQECLQGRRLALPAYTVTKVHGEAHN 184

Query: 187 PRFTVVVEISGL-APAQGMDCSKR 209
             FTV  E++GL  P  G   S+R
Sbjct: 185 QEFTVQCEVTGLDKPVIGKGSSRR 208


>gi|298242449|ref|ZP_06966256.1| ribonuclease III [Ktedonobacter racemifer DSM 44963]
 gi|297555503|gb|EFH89367.1| ribonuclease III [Ktedonobacter racemifer DSM 44963]
          Length = 227

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 117/227 (51%), Gaps = 9/227 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLFN 61
           +  LE  +   F N +LL  ALTH S  +      + S ERLEFLGD IL L+ +  L+ 
Sbjct: 2   HEELEAILDIQFHNPNLLTLALTHRSYIYEAAGEGRSSNERLEFLGDSILALISADFLYR 61

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F    EGEL+     LV  ET +  AR+++L++F+ +    +         + A   E+
Sbjct: 62  TFPDLAEGELTDARAVLVRTETLANFARDINLSNFLLMGKGEQHSGGG--QRVLASAFEA 119

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           L+ A+YLD G++   TF+ K  +  A  +   +  +D K+  QE A A  G+TP Y++  
Sbjct: 120 LLGAIYLDQGLDAVQTFLLKRLEPLAHTIVRNRLFKDNKSLFQELAQAHDGITPSYRLVN 179

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           + GP H+  FT+ V +      +G   +K++AEQ AA + L   G W
Sbjct: 180 QEGPSHNREFTIEVLLGEQVAGRGQGRNKQSAEQEAARQALLSRG-W 225


>gi|330877435|gb|EGH11584.1| ribonuclease III [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 229

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/222 (37%), Positives = 116/222 (52%), Gaps = 6/222 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S LE+++ Y F ++ L+  ALTH S +     + ERLEFLGD IL  +    LF  F  A
Sbjct: 6   SRLERQLDYTFKDQELMILALTHRSFAG---RNNERLEFLGDAILNFVAGEALFERFPQA 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +EG+LS     LV  ET + +AR  DL  ++R+ S   K       SI AD +E+LI A+
Sbjct: 63  REGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADALEALIGAI 122

Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD G+E A   V  +      +L      +D KT LQE+  ++    P Y+V    G  
Sbjct: 123 YLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACDLPRYEVVDIQGEP 182

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225
           H   F V  EI+ L   ++G   S+R AEQVAAA  L   G+
Sbjct: 183 HCRTFFVECEINLLNEKSRGQGVSRRIAEQVAAAAALIALGV 224


>gi|254283270|ref|ZP_04958238.1| ribonuclease III [gamma proteobacterium NOR51-B]
 gi|219679473|gb|EED35822.1| ribonuclease III [gamma proteobacterium NOR51-B]
          Length = 222

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 113/222 (50%), Gaps = 7/222 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +R  +LE+ IGY F + +LL++ALTH S S +   + ERLEFLGD ++  +++  LF  F
Sbjct: 1   MRRQSLEQAIGYHFRDSTLLQRALTHRSASRA---NNERLEFLGDSVINHIVAEALFLKF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EG+L+     LV  E  + +A  L+LA  + + +  RK       SI AD VE++ 
Sbjct: 58  PDADEGQLTRLRAILVRGEYLAGLAHGLELADALILGAGERKSGGRQRRSILADAVEAIA 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+ +D         V + W    L        +D KT LQEW  A+    P Y +    
Sbjct: 118 GAMLIDSEFATVRKVVLQ-WYHEGLDEITLDAVKDPKTRLQEWLQARGEELPSYDLVQVD 176

Query: 182 GPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKR 222
           G DH   FTV  +++G   A  G   S+R AEQ AA   L+R
Sbjct: 177 GEDHRQSFTVTCQLAGRDLALTGRGSSRRRAEQAAAKATLER 218


>gi|222529151|ref|YP_002573033.1| ribonuclease III [Caldicellulosiruptor bescii DSM 6725]
 gi|222455998|gb|ACM60260.1| ribonuclease III [Caldicellulosiruptor bescii DSM 6725]
          Length = 222

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/216 (34%), Positives = 122/216 (56%), Gaps = 9/216 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +EK +GY F +++LL  ALTH S +HS +  YERLEFLGD  L L++S  LF HF    E
Sbjct: 4   IEKALGYKFMDKNLLRLALTHKSATHSNKNCYERLEFLGDAALELVVSKYLFVHFPELSE 63

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GEL+    ++V ++T S++A +L+L + I      + +      SI  DVVE++  A+++
Sbjct: 64  GELTNIRAAVVCSQTLSKIAEKLNLKNHIIFGKREKMEKFHENKSILTDVVEAIFGAIFI 123

Query: 129 DGGIE-VAGTFVD--KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           + G E +    V+  K + Q+A+ +GK   D KT+LQE+   K     + K+ ++     
Sbjct: 124 ESGFEKLEKIIVNLLKPYIQKAV-AGKLFYDYKTKLQEFVQKK----GQKKIVYKDYEII 178

Query: 186 DPR-FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           + + F   + I G   ++G   SK+ A+Q AA + L
Sbjct: 179 EKKYFKSELFIEGKKVSEGYGTSKKEAQQDAAYKFL 214


>gi|256827009|ref|YP_003150968.1| ribonuclease III [Cryptobacterium curtum DSM 15641]
 gi|256583152|gb|ACU94286.1| ribonuclease III [Cryptobacterium curtum DSM 15641]
          Length = 279

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/211 (36%), Positives = 108/211 (51%), Gaps = 4/211 (1%)

Query: 13  IGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
           +GY F++   L  A+TH S       + SYERLEFLGD ILG +++   F+ F    EG 
Sbjct: 18  LGYRFSDEHFLLSAITHPSAVEGMPVKFSYERLEFLGDSILGAVVADAAFHRFPDLDEGG 77

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           L+    SLV+  + SQVA EL  A FI             + S   +V E+++AALYLDG
Sbjct: 78  LTRIKVSLVAGSSLSQVANELGFADFIIFGQSEAGTGRRGLHSALENVYEAVVAALYLDG 137

Query: 131 GIEVAGTF-VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
           G+EVA +F V       ++   +   + K+ LQE      G+TP YK+    GP HD  F
Sbjct: 138 GMEVARSFIVQTLLGYMSIDMAREPENPKSALQEKLQED-GITPTYKLIETQGPPHDRTF 196

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
              V     A A+G+  +K+ AE  AA   L
Sbjct: 197 VAAVYAGLQALARGVGRTKKEAESKAAQTAL 227


>gi|332981630|ref|YP_004463071.1| ribonuclease III [Mahella australiensis 50-1 BON]
 gi|332699308|gb|AEE96249.1| ribonuclease III [Mahella australiensis 50-1 BON]
          Length = 228

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 113/220 (51%), Gaps = 4/220 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLISTLLFNH 62
           R   L   +GY F + + L++ALTHSS ++ +   Y  ERLE LGD +L ++I+  LF  
Sbjct: 3   RLKELMDLLGYRFNDINKLDEALTHSSYAYEHGLDYYNERLELLGDSVLNIIITDYLFVT 62

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +    EG LS   +++VS +   +VA  ++L S++ +S   +        S  AD VE++
Sbjct: 63  YPELSEGNLSKLRSNIVSEKPLYKVAAAMNLGSYLLLSRGEKLSHGDMRPSTLADTVEAI 122

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFR 180
           I A+YLDGG + A  FV         ++       D K+ELQE          +Y++   
Sbjct: 123 IGAVYLDGGFDAAKVFVLSLLAPIIEETAAISNFNDYKSELQERLQIDGYSDIKYEIIRE 182

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            GPDHD  F   V++ G    +G   SK+ AEQ AA + L
Sbjct: 183 EGPDHDKMFFAEVKVDGKPVGRGSGRSKKDAEQKAAQQAL 222


>gi|317058970|ref|ZP_07923455.1| ribonuclease III [Fusobacterium sp. 3_1_5R]
 gi|313684646|gb|EFS21481.1| ribonuclease III [Fusobacterium sp. 3_1_5R]
          Length = 235

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 118/224 (52%), Gaps = 9/224 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           LE RI Y F +++LL+ AL H S  + ++     + E+LE LGD +LGL+++  L+  + 
Sbjct: 11  LEHRINYYFNDKNLLKNALIHRSFGNEHKHYKNINNEKLELLGDAVLGLVVAEYLYQKYP 70

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             KEG L+   +  VS    + ++R+L +  ++ +S            SI  DV E+++ 
Sbjct: 71  EEKEGVLAKIKSMAVSEPVLASISRKLRIGEYLLLSKGEMVTGGRDRNSILGDVFEAILG 130

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YLD G   A  +V  + K        F    D KT LQE+   K+   P+Y +    G
Sbjct: 131 AIYLDSGFFAAKEYVLFHLKDMIDHIDDFEEILDFKTILQEYCQKKYRDIPKYTLVGEEG 190

Query: 183 PDHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           PDH   F + V+I + +A A+G   +K+ AEQ+AA ++ K  G+
Sbjct: 191 PDHRKLFEMQVQIQNNIAKAKG--TNKKIAEQMAAKQLCKELGV 232


>gi|331091059|ref|ZP_08339901.1| ribonuclease III [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330405281|gb|EGG84817.1| ribonuclease III [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 231

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/205 (35%), Positives = 103/205 (50%), Gaps = 5/205 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
           LEK+IGY F    LL +A+ HSS ++       E  ERLEFLGD +L L+ S  LF    
Sbjct: 8   LEKKIGYKFQRFDLLCQAMRHSSYANEKHMEKNECNERLEFLGDAVLELVSSEFLFFENK 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGEL+    S+V   + +  AREL+L S++ +          +  S+ +D +E+LI 
Sbjct: 68  KMPEGELTRTRASIVCEPSLAFCARELNLGSYLLLGKGEENTGGRYRESLTSDALEALIG 127

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A+YLDGG   A  F+ ++     L+  K   D+KT LQE     F    EY +    GPD
Sbjct: 128 AIYLDGGFASAKEFIHRFV-LNDLEHKKLFFDSKTILQEIVQGNFNEPIEYTLLKEEGPD 186

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKR 209
           H+  F + V I       G   +K+
Sbjct: 187 HNKSFFISVSIGNEVYGNGKGRTKK 211


>gi|189219126|ref|YP_001939767.1| Ribonuclease III [Methylacidiphilum infernorum V4]
 gi|189185984|gb|ACD83169.1| Ribonuclease III [Methylacidiphilum infernorum V4]
          Length = 247

 Score =  109 bits (273), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/232 (33%), Positives = 119/232 (51%), Gaps = 16/232 (6%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES-------YERLEFLGDRILGLLIS 56
           ++   LEK++GYAF N  LLE+ALTH S    + ES       ++RLEFLGD +LGL ++
Sbjct: 1   MQLEELEKKMGYAFKNPQLLEEALTHPSF---FVESIRVNKGDFQRLEFLGDAVLGLAVT 57

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  F S  EG+L+     LVS +    +A  L++  ++R+     K+      S  A
Sbjct: 58  EKLFQLFPSFDEGKLTKLRARLVSRKNLCSLASLLEIGKYLRLGKGEEKNQGRTKPSNLA 117

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFR----RDAKTELQEWAHAKFG 170
           + +ES+I ALYLDGG + A +F+ + +      L+    R     ++K  LQE+   K  
Sbjct: 118 NALESVIGALYLDGGWDRAKSFIFELFNPLFMELEKDPMRFVEHENSKGLLQEFLQKKGT 177

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             P Y++   SG  H+  + V V        +G   SK+ AE  AA E  ++
Sbjct: 178 ELPIYRIVLESGEAHNKWYEVEVSWKNQVLGKGSGKSKKEAELRAAKEAFEK 229


>gi|237732553|ref|ZP_04563034.1| ribonuclease III [Citrobacter sp. 30_2]
 gi|226908092|gb|EEH94010.1| ribonuclease III [Citrobacter sp. 30_2]
          Length = 204

 Score =  109 bits (273), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/203 (35%), Positives = 109/203 (53%), Gaps = 6/203 (2%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           +++ALTH S S  + E   RLEFLGD IL  +I+  L++ F    EG++S    +LV   
Sbjct: 1   MQQALTHRSASSKHNE---RLEFLGDSILSFVIANALYHRFPRVDEGDMSRMRATLVRGN 57

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
           T +++ARE DL   +R+     K       SI AD VE+LI  ++LD  I+     +  +
Sbjct: 58  TLAELAREFDLGECLRLGPGELKSGGFRRESILADTVEALIGGVFLDSDIQTVEQLILNW 117

Query: 143 WKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA- 199
           ++ R   +  G  ++D KT LQE+   +    P Y V    G  HD  FT+  ++SGL+ 
Sbjct: 118 YQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLSE 177

Query: 200 PAQGMDCSKRAAEQVAAAEVLKR 222
           P  G   S+R AEQ AA + LK+
Sbjct: 178 PVVGTGSSRRKAEQAAAEQALKK 200


>gi|260583707|ref|ZP_05851455.1| ribonuclease III [Granulicatella elegans ATCC 700633]
 gi|260158333|gb|EEW93401.1| ribonuclease III [Granulicatella elegans ATCC 700633]
          Length = 234

 Score =  109 bits (273), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/212 (33%), Positives = 113/212 (53%), Gaps = 7/212 (3%)

Query: 17  FANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           F N + L++ALTHSS ++ +++      ER+EFLGD +L L IS  L+    + KEGEL+
Sbjct: 19  FKNENYLKEALTHSSYANEHKDCKGIYNERIEFLGDAVLELFISNWLYRQMPTKKEGELT 78

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                +V  E+ S +A+E +L  ++ +    R        ++  DV E+ + A+YLD G 
Sbjct: 79  KLRAQIVCEESLSTLAKECELDKYLLLGKGERASKGHENPAVLCDVFEAFVGAIYLDQGF 138

Query: 133 EVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           E A  F+ +    + +K G+F    D KTELQE+      V   Y++    GP H   +T
Sbjct: 139 EGASQFLTQVIISK-IKDGRFTLVGDFKTELQEYFQRNGNVNIRYELLKEEGPSHARYYT 197

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           V V ++      G   +K+AAEQ++A   L++
Sbjct: 198 VQVHVNDKGYEIGEGKTKKAAEQLSARRTLEK 229


>gi|57234229|ref|YP_181741.1| ribonuclease III [Dehalococcoides ethenogenes 195]
 gi|90101623|sp|Q3Z7Q8|RNC_DEHE1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|57224677|gb|AAW39734.1| ribonuclease III [Dehalococcoides ethenogenes 195]
          Length = 237

 Score =  109 bits (273), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 121/226 (53%), Gaps = 8/226 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSS----ISHSYQESYERLEFLGDRILGLLISTLL 59
           L  + LEK +G  F N SLLE+AL H+S      +    S ER+EFLGD +LG++ +  L
Sbjct: 2   LDLTELEKSLGVKFENLSLLEQALIHTSWVNENPNHLSGSNERMEFLGDAVLGVIFADRL 61

Query: 60  FNHFDSAKEGELSVRFNS-LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           ++ F   +EG+L+ RF S LV  E+  +VA  ++L  ++ +          F  +  A  
Sbjct: 62  YHDFPDIQEGDLT-RFRSLLVRRESLVRVALGINLGKYLYLGRGEDASKGRFKPANLAGA 120

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
            E+++AA+YLD GI+     + + +K     +++     D K+ LQE   A+F +TP Y+
Sbjct: 121 FEAVLAAIYLDKGIDATREVIFRLFKTEMERVQTLSSNIDYKSRLQELVQAQFQLTPRYR 180

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +   SGP+H+  F   V       A+G   SK+ AE  AA E L++
Sbjct: 181 IIDFSGPEHNHLFIAEVYTEDKVLAEGSGRSKKEAETSAAKEALQQ 226


>gi|313623280|gb|EFR93523.1| ribonuclease III [Listeria innocua FSL J1-023]
          Length = 229

 Score =  109 bits (273), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 115/218 (52%), Gaps = 7/218 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++  L++ +G+ F N  LL++A THSS  + ++    +  ERLEFLGD +L L +S  LF
Sbjct: 3   QWEELQESVGFDFQNVELLQQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N +    EG ++    ++V   +  + A  +  + ++R+     K       ++ ADV E
Sbjct: 63  NKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178
           S I ALYLD GI+   TF+++    + + +G + +  D KT+LQE       V  EY + 
Sbjct: 123 SFIGALYLDNGIDKVVTFLERVIFPK-IDAGAYLQTVDYKTQLQEIVQRDRDVLIEYDIL 181

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             +GP H+  F   V ++G    +G   +K+ AEQ AA
Sbjct: 182 GETGPAHNKSFDAQVIVNGQVLGKGSGRTKKQAEQSAA 219


>gi|163790810|ref|ZP_02185235.1| Ribonuclease (RNase III) [Carnobacterium sp. AT7]
 gi|159873878|gb|EDP67957.1| Ribonuclease (RNase III) [Carnobacterium sp. AT7]
          Length = 231

 Score =  109 bits (273), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 114/220 (51%), Gaps = 7/220 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62
           + L+ + G  F + S LE+A THSS  + ++    +  ER+EFLGD +L L +S  L+  
Sbjct: 7   THLKTKFGLVFQDLSYLEEAFTHSSYVNEHRNLKLKDNERIEFLGDAVLELTVSRFLYEL 66

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           + +  EG+L+    ++V   + SQ A+E +   FIR+     +       ++  D+ ES 
Sbjct: 67  YPNVPEGKLTRLRATIVCEASFSQFAKEYEFDQFIRLGKGEERMNGRKRPALLCDLFESF 126

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180
           + ALYLD G++    F+++    + +KSG F    D KT LQE+   K  +  EY +   
Sbjct: 127 VGALYLDQGLDGVLFFLEQTIFPK-IKSGAFSHVMDHKTNLQEFLQQKGEIEIEYNLVDE 185

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            GP H   F V V   G    QG   +K+AAEQVAA   L
Sbjct: 186 IGPAHQKAFVVEVLAEGQLLGQGQGKTKKAAEQVAAENAL 225


>gi|237746716|ref|ZP_04577196.1| ribonuclease III [Oxalobacter formigenes HOxBLS]
 gi|229378067|gb|EEO28158.1| ribonuclease III [Oxalobacter formigenes HOxBLS]
          Length = 273

 Score =  109 bits (273), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/215 (34%), Positives = 109/215 (50%), Gaps = 6/215 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L+ RIGY F + +LLE A+TH S S  + E   RLEFLGD +L  + +  L+  + +  E
Sbjct: 12  LQDRIGYTFHDAALLETAMTHRSYSSHHNE---RLEFLGDSLLNCVTAINLYERYAALNE 68

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G LS   +SLV  +   ++A +L+L+ F+R+     K       SI AD +E+L  A++L
Sbjct: 69  GSLSRLRSSLVRQQALYEIACKLELSRFLRLGEGELKAGGFKRPSILADAMEALFGAVFL 128

Query: 129 DGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D G E     + + +    + L    + +DAKT+LQE+        PEY V    G  H+
Sbjct: 129 DAGFETVKRVITRLFADMMKELDPETYGKDAKTQLQEYLQGHKMALPEYHVVATRGAAHN 188

Query: 187 PRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVL 220
             F V   I        G   S+RA EQ AA + L
Sbjct: 189 QEFEVECVIGKFDIHVYGTGSSRRAGEQEAARKAL 223


>gi|257066163|ref|YP_003152419.1| ribonuclease III [Anaerococcus prevotii DSM 20548]
 gi|256798043|gb|ACV28698.1| ribonuclease III [Anaerococcus prevotii DSM 20548]
          Length = 239

 Score =  109 bits (272), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 110/202 (54%), Gaps = 6/202 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65
            E +IGY F ++ L++ A THSS ++  +   +S ERLEFLGD IL +++S +LF H+  
Sbjct: 14  FENKIGYTFNDKDLIDVAFTHSSYTNEVKGKKKSNERLEFLGDSILDMIVSEVLFKHYSM 73

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG L+   + LV   + ++   + ++ +F+   +  R+        ++AD  E++ AA
Sbjct: 74  KPEGWLTKTRSRLVCTSSFAKACEKFEMTTFLNFGNGERQGGGELKKHVKADTFEAVCAA 133

Query: 126 LYLDGGIEVAGTFVDKYWKQRALK---SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +YLD   +    F+ + +K+ AL+         D KT+LQE+ +AK     +Y +    G
Sbjct: 134 IYLDSSYDNLFKFLKENYKEEALEIINDDSIFNDYKTKLQEYHNAKDRKILKYVLVKEEG 193

Query: 183 PDHDPRFTVVVEISGLAPAQGM 204
           P+H+  FT+ V++     A G+
Sbjct: 194 PEHEKTFTMAVKLGNKVLAHGV 215


>gi|299821773|ref|ZP_07053661.1| ribonuclease III [Listeria grayi DSM 20601]
 gi|299817438|gb|EFI84674.1| ribonuclease III [Listeria grayi DSM 20601]
          Length = 230

 Score =  109 bits (272), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 117/224 (52%), Gaps = 7/224 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60
           ++  L++ +G+ F N  LL++A THSS  + +++      ERLEFLGD +L L +S  LF
Sbjct: 3   KWEELQESVGFTFENVGLLQEAFTHSSYVNEHRKEKLNDNERLEFLGDAVLELTVSDYLF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             + +  EG+L+    ++V   +  + A  +  + +IR+ +   K       ++ ADV E
Sbjct: 63  QKYPNLAEGQLTKMRAAIVCEPSLVEFAENIHFSKYIRLGNGEEKAGGRTRPALLADVFE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178
           S I ALYLD G++    F+++    + + +G F    D KT+LQE       V  +Y + 
Sbjct: 123 SFIGALYLDNGLKNVIRFLERVIFPK-IDTGAFLETVDHKTQLQEIVQRDRDVLIQYDIL 181

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             SGP H   F   V ++G    +G   +K+ AEQ AA E + +
Sbjct: 182 EESGPAHSKAFEAQVVVNGQMLGRGEGRTKKQAEQNAAKEAINK 225


>gi|296127821|ref|YP_003635073.1| ribonuclease III [Brachyspira murdochii DSM 12563]
 gi|296019637|gb|ADG72874.1| ribonuclease III [Brachyspira murdochii DSM 12563]
          Length = 246

 Score =  109 bits (272), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/213 (33%), Positives = 113/213 (53%), Gaps = 5/213 (2%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQESY---ERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           I Y F N+S L +A+TH + ++  ++     +RLEFLGD +L L+IS  LF  ++++KEG
Sbjct: 17  IKYEFRNKSYLLEAITHRTYANESKKKMKYNQRLEFLGDSVLSLIISDYLFKKYNTSKEG 76

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
            LS   +SLVS ++ + +++EL L  FI +          +  ++  D+ E+++ A+YLD
Sbjct: 77  LLSKVKSSLVSQKSLADISKELKLGDFILLGHGEEVSGGRYRDNMLEDLFEAIVGAIYLD 136

Query: 130 GGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
            GI  A  FV K +K R   L    F +D KT  QE    K   +P YK       ++  
Sbjct: 137 SGINNAAQFVMKAYKNRLNNLDIENFDKDYKTIFQELIQKKHKTSPVYKSYEYHDENNHE 196

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            F   V ++    + G+  SK+ AE  AA + L
Sbjct: 197 MFKSEVYVNDKNFSSGIGKSKKEAETEAAKKAL 229


>gi|297626608|ref|YP_003688371.1| ribonuclease III [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922373|emb|CBL56945.1| Ribonuclease III [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 240

 Score =  109 bits (272), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 116/222 (52%), Gaps = 9/222 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNH 62
           R++ L K +G    +  LL  ALTH S ++ + +    ERLEFLGD +LG+ ++  L+ H
Sbjct: 10  RFAELIKELGVPL-DAELLGLALTHRSYAYEHGQIPHNERLEFLGDSVLGINVTDYLYRH 68

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L+    ++VS+ + ++VAR L +   +++            TSI AD  E+L
Sbjct: 69  FPDYAEGRLAKLRAAVVSSVSLAEVARSLGIGQLVKLGHGELTTGGRDKTSILADTTEAL 128

Query: 123 IAALYLDGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           I A+Y+      A  FV   +     RA+K G    D KT LQE A A     PEY+++ 
Sbjct: 129 IGAIYMT-DPSGAAKFVHHIFDPLVDRAVKMGA-GLDWKTSLQEIAAAMESDPPEYRIS- 185

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            +GPDHD RFT V  + G     GM  +K+ AEQ AA    +
Sbjct: 186 ETGPDHDKRFTAVALVDGRTFDPGMGHNKKQAEQHAAENAFR 227


>gi|28210930|ref|NP_781874.1| ribonuclease III [Clostridium tetani E88]
 gi|73917577|sp|Q895M9|RNC_CLOTE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|28203369|gb|AAO35811.1| ribonuclease III [Clostridium tetani E88]
          Length = 235

 Score =  109 bits (272), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/217 (34%), Positives = 115/217 (52%), Gaps = 6/217 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           L+ +I   F N  LL  ALTHSS ++  +  +  ERLEFLGD +L L+I+  LF ++   
Sbjct: 10  LQNKIEIKFENIKLLHIALTHSSYANEKKRIQYNERLEFLGDSVLQLVITEYLFMNYKDK 69

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS +   +V   +   +A+ L+L  +I++S            SI AD VE+LIA++
Sbjct: 70  SEGELSKKRALIVCENSLFSIAKNLELGEYIKMSKGEELTGGRERISILADAVEALIASI 129

Query: 127 YLDGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           YLD GI+V   F+ K +    ++A+K  +   D KT+LQE       +   Y +    GP
Sbjct: 130 YLDKGIDVVREFILKNFYNIVEKAMKD-EIILDYKTKLQEIIQKDGDIQINYILIKHEGP 188

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            H  +F   V+I       G+  SK+ +EQ AA + +
Sbjct: 189 PHRRKFYTEVKIKDNVLGYGIGYSKKESEQNAAKKAI 225


>gi|118594601|ref|ZP_01551948.1| ribonuclease III [Methylophilales bacterium HTCC2181]
 gi|118440379|gb|EAV47006.1| ribonuclease III [Methylophilales bacterium HTCC2181]
          Length = 243

 Score =  109 bits (272), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 114/219 (52%), Gaps = 6/219 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M++ +   +E  +G+ F +++L++ ALTH S   +  E+ ERLEFLGD IL  +++ LL+
Sbjct: 15  MNSNQIEQIESILGHTFKDKALIKIALTHRS---AKGENNERLEFLGDGILNFIVAELLY 71

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG+LS   + LV   T   +A+ L +  F+ +     K       SI AD +E
Sbjct: 72  VRFQQLSEGDLSRLRSQLVKESTLCDIAKNLTIGDFLLLGEGELKSAGWRRPSILADSLE 131

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++IAA+YLD GI    +F+++ + +    +   K  +D K+ LQE+   K    PEY V 
Sbjct: 132 AIIAAIYLDDGIGKVKSFIERRFNEHIITIDPNKIHKDDKSLLQEFLQGKKIAIPEYTVI 191

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAA 216
              G  H   F V   I  L   + G   S++ AEQ AA
Sbjct: 192 EIEGEPHAQVFEVKCRIPKLNIEKIGKGPSRKIAEQNAA 230


>gi|78189616|ref|YP_379954.1| ribonuclease III [Chlorobium chlorochromatii CaD3]
 gi|90101617|sp|Q3AQ14|RNC_CHLCH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|78171815|gb|ABB28911.1| RNAse III [Chlorobium chlorochromatii CaD3]
          Length = 248

 Score =  109 bits (272), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 114/222 (51%), Gaps = 10/222 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSI------SHSYQESYERLEFLGDRILGLLISTLLFNH 62
           L+  IG    N  L + ALTH S+      SH + ES +RLEFLGD +LGLLIS  LF +
Sbjct: 9   LQTLIGSLDGNARLYQTALTHRSVIGNTALSH-HNESNQRLEFLGDAVLGLLISHFLFQN 67

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F ++ EG+LS     +V++++ +  AR + L   + +             S  AD  ESL
Sbjct: 68  FPASAEGDLSKTRAKIVNSKSLACFARSIGLGEHLLLGESAAHYNIRDSESALADAFESL 127

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFR 180
           I A+YLD G++ A  FVDK+       S      ++ K+ L E++ A     P Y V   
Sbjct: 128 IGAIYLDKGLDAAYGFVDKHIIHHQSFSAIVASEQNYKSCLIEYSQAHHVAAPVYTVIAE 187

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            G +HD  FTV V  + +    G    K+ AEQ+AA E ++R
Sbjct: 188 HGAEHDKEFTVEVSCNNIKGC-GTARRKKDAEQLAAKEAMER 228


>gi|330502445|ref|YP_004379314.1| ribonuclease III [Pseudomonas mendocina NK-01]
 gi|328916731|gb|AEB57562.1| ribonuclease III [Pseudomonas mendocina NK-01]
          Length = 229

 Score =  109 bits (272), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 115/222 (51%), Gaps = 6/222 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S LE+++GY+F ++ L+  ALTH S +     + ERLEFLGD IL  +    LF  F  A
Sbjct: 6   SRLERKLGYSFKDQDLMVLALTHRSFAGR---NNERLEFLGDAILNFVAGEALFERFPQA 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +EG+LS     LV  ET + +AR  +L  ++R+ S   K       SI AD +E+LI A+
Sbjct: 63  REGQLSRLRARLVKGETLAVLARGFELGEYLRLGSGELKSGGFRRESILADALEALIGAI 122

Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD G+E A   V  +       L      +D KT LQE+  ++    P Y+V    G  
Sbjct: 123 YLDAGMEAARERVLDWLTGELDGLTLVDTNKDPKTRLQEFLQSRACELPRYEVVDVQGEP 182

Query: 185 HDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKREGI 225
           H   F V  +++ L     G   S+R AEQVAAA  L   G+
Sbjct: 183 HCRTFMVECQVALLNEKTLGQGGSRRIAEQVAAAAALIALGV 224


>gi|300691972|ref|YP_003752967.1| ribonuclease III (RNase III) [Ralstonia solanacearum PSI07]
 gi|299079032|emb|CBJ51694.1| Ribonuclease III (RNase III) [Ralstonia solanacearum PSI07]
          Length = 256

 Score =  109 bits (272), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/212 (36%), Positives = 110/212 (51%), Gaps = 8/212 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L++R+GY F+   LL++ALTH S S  + E   RLEFLGD IL   ++ +L+  F    E
Sbjct: 6   LQQRLGYRFSKPELLQQALTHRSHSAMHNE---RLEFLGDSILNCAVADMLYGMFGKLDE 62

Query: 69  GELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           G+LS VR N LV  +   ++A+ L L   +R+     K       SI AD +E++  A++
Sbjct: 63  GDLSRVRAN-LVKQQALYEIAQMLQLPDALRLGEGELKSGGFRRPSILADALEAIFGAVF 121

Query: 128 LDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           LDGG + A T + K +      +      +DAKT LQE+        P+Y V    G  H
Sbjct: 122 LDGGFDAARTLIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYAVVATHGAAH 181

Query: 186 DPRFTVVVEISGLA-PAQGMDCSKRAAEQVAA 216
           + +F V   I  L     G   S+RAAEQ AA
Sbjct: 182 NQQFEVECTIPKLEIRVSGSGASRRAAEQSAA 213


>gi|83748443|ref|ZP_00945465.1| Ribonuclease III [Ralstonia solanacearum UW551]
 gi|207725215|ref|YP_002255611.1| ribonuclease III (rnase III) protein [Ralstonia solanacearum MolK2]
 gi|207743590|ref|YP_002259982.1| ribonuclease III (rnase III) protein [Ralstonia solanacearum
           IPO1609]
 gi|83724854|gb|EAP72010.1| Ribonuclease III [Ralstonia solanacearum UW551]
 gi|206590449|emb|CAQ37411.1| ribonuclease III (rnase III) protein [Ralstonia solanacearum MolK2]
 gi|206594989|emb|CAQ61916.1| ribonuclease III (rnase III) protein [Ralstonia solanacearum
           IPO1609]
          Length = 256

 Score =  109 bits (272), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/212 (36%), Positives = 110/212 (51%), Gaps = 8/212 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L++R+GY F+   LL++ALTH S S  + E   RLEFLGD IL   ++ +L+  F    E
Sbjct: 6   LQQRLGYRFSKPELLQQALTHRSHSAMHNE---RLEFLGDSILNCAVADMLYGMFGKLDE 62

Query: 69  GELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           G+LS VR N LV  +   ++A+ L L   +R+     K       SI AD +E++  A++
Sbjct: 63  GDLSRVRAN-LVKQQALYEIAQMLQLPDALRLGEGELKSGGFRRPSILADALEAIFGAVF 121

Query: 128 LDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           LDGG + A T + K +      +      +DAKT LQE+        P+Y V    G  H
Sbjct: 122 LDGGFDAARTLIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYAVVATHGAAH 181

Query: 186 DPRFTVVVEISGLA-PAQGMDCSKRAAEQVAA 216
           + +F V   I  L     G   S+RAAEQ AA
Sbjct: 182 NQQFEVECTIPKLEIRVSGSGASRRAAEQSAA 213


>gi|262282633|ref|ZP_06060401.1| ribonuclease III [Streptococcus sp. 2_1_36FAA]
 gi|262261924|gb|EEY80622.1| ribonuclease III [Streptococcus sp. 2_1_36FAA]
          Length = 232

 Score =  109 bits (272), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 113/218 (51%), Gaps = 7/218 (3%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           R G  F + SLLE A TH+S ++ ++       ERLEFLGD +L L+IS  LF  +    
Sbjct: 11  RFGLVFKDVSLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIISEYLFEKYPKRP 70

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG+L+   +++V  E+ +  +R+     FI++     K       +I  D+ E+ + AL 
Sbjct: 71  EGDLTKLRSTIVREESLAGFSRDCQFDLFIKLGKGEEKSGGRERETILGDLFEAFLGALL 130

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           LD G+E+   F+ +    + +++G F +  D KT+LQE   +   V   Y+V   SGP H
Sbjct: 131 LDKGLEIVKDFIYQVMIPK-VEAGDFEQVTDYKTKLQELLQSNGDVEILYQVVSESGPAH 189

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              F V V + G    +G   SK+ AEQ AA    ++E
Sbjct: 190 AKNFEVSVSVDGRLVGKGQGRSKKLAEQEAAKNAFEKE 227


>gi|118602619|ref|YP_903834.1| ribonuclease III [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
 gi|118567558|gb|ABL02363.1| RNAse III [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
          Length = 221

 Score =  109 bits (272), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 118/221 (53%), Gaps = 14/221 (6%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L+K+I Y F + SLL+ ALTH S+    + + ERLEFLGD ILG++IS  L+  F +  E
Sbjct: 4   LQKKINYQFKDLSLLKLALTHCSMG---KNNNERLEFLGDSILGVIISKELYQRFPNIDE 60

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS   + LV  +T +Q++  L+L++ + +     K       SIQAD +E++  A+ L
Sbjct: 61  GKLSRLRSHLVRDQTLTQLSAGLELSNSLILGFGELKSGGYRRESIQADAIEAIFGAVLL 120

Query: 129 DGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D   E   T V   ++     +      +D KT+LQE+      V P+Y++T   G DH+
Sbjct: 121 DSNFETTSTVVLDLFEMLLNNISPDDSLKDPKTQLQEYLQKYGNVLPKYELTDTIGKDHN 180

Query: 187 PRFTVVVEISGLAPAQGMDCSKRA-----AEQVAAAEVLKR 222
             FT    I+ L   Q +  S+ A     AEQ  A  +LK+
Sbjct: 181 AIFT----INCLLKDQNLQVSQSAKSIKKAEQSCAQTLLKK 217


>gi|300869947|ref|YP_003784818.1| ribonuclease III [Brachyspira pilosicoli 95/1000]
 gi|300687646|gb|ADK30317.1| ribonuclease III [Brachyspira pilosicoli 95/1000]
          Length = 229

 Score =  108 bits (271), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 69/215 (32%), Positives = 114/215 (53%), Gaps = 5/215 (2%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           EK + Y+F N++ L +A+TH + ++     +  +RLEFLGD +L L+IS  ++  +++ K
Sbjct: 10  EKVLQYSFKNKNYLLEAITHRTFANENGNMKYNQRLEFLGDSVLSLIISEHIYKEYNNVK 69

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG+LS     LVS  T + ++R+L L  F+ +             ++  D+ E++I A+Y
Sbjct: 70  EGKLSKIKAYLVSQNTLANISRKLKLGDFLLLGKGEEASGGRERDNMLEDLFEAIIGAIY 129

Query: 128 LDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           LD  +E    FV + +K     L    F +D KT LQE    K+ +TP YK ++    + 
Sbjct: 130 LDSNLENTKNFVMRVYKDILNKLDINNFDKDYKTILQEIVQKKYKITPTYK-SYEYNEND 188

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +  F V V +     A G+  SK+ AE  AA + L
Sbjct: 189 NIMFKVEVYVKTKKYASGIGKSKKEAEINAAKKAL 223


>gi|157362928|ref|YP_001469695.1| ribonuclease III [Thermotoga lettingae TMO]
 gi|189043371|sp|A8F397|RNC_THELT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|157313532|gb|ABV32631.1| Ribonuclease III [Thermotoga lettingae TMO]
          Length = 238

 Score =  108 bits (271), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 126/229 (55%), Gaps = 25/229 (10%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQ-------ESYERLEFLGDRILGLLISTLLFNHF 63
           ++IGY F    LL  AL HSS +H  +       ES ERLEFLGD ++ LL++  L+  F
Sbjct: 14  EKIGYRFYEPELLYNALCHSSYAHEQKQRGRKDVESNERLEFLGDAVIDLLLAEYLYLEF 73

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFI------RVSSDLRKDVCSFMTSIQAD 117
             A EG ++    ++ S E  +Q+AR+++L  ++       VSS   +D      S+ AD
Sbjct: 74  PEASEGVMAKVKAAIASEEALAQIARDINLGRYMFLGRGEEVSSGRERD------SLLAD 127

Query: 118 VVESLIAALYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP 173
           ++E+++AA+Y+DGG+    +V  ++  KY K+  +  GK   D KT LQE   A++   P
Sbjct: 128 MLEAVVAAVYIDGGLTAVKKVFLSYFAKYAKE--VVEGKIVFDYKTSLQEITQARYRKLP 185

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           EY +    GP H  +FTV + +SG   A G   S + AE+ AA   +++
Sbjct: 186 EYVLVNEKGPSHMKKFTVELRLSGKLIAVGEGPSIKEAEKEAARRAIEK 234


>gi|169830829|ref|YP_001716811.1| ribonuclease III [Candidatus Desulforudis audaxviator MP104C]
 gi|169637673|gb|ACA59179.1| Ribonuclease III [Candidatus Desulforudis audaxviator MP104C]
          Length = 235

 Score =  108 bits (271), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/212 (35%), Positives = 109/212 (51%), Gaps = 4/212 (1%)

Query: 13  IGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
           IG  + +  LL +ALTHSS S  H      +RLEFLGD +L +++S  L+     A EG+
Sbjct: 14  IGLFWRDPDLLLEALTHSSFSYEHPGHRHNQRLEFLGDAVLEIVVSEHLYRRLPDAPEGD 73

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           L+    ++V     + VARE++L +++R+             S+ AD +E+L+ ALYLD 
Sbjct: 74  LTKIRAAVVCEPALAHVAREMNLGTYLRMGRGEELSGGRERPSVLADALEALLGALYLDQ 133

Query: 131 GIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           G+EVA  F  +  +    A  +GK   D KT LQE    +      Y +    GPDH+  
Sbjct: 134 GLEVARWFALQSLEPIISATLAGKGEADYKTRLQELLQKRSPEPLRYVIIKEEGPDHNKL 193

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           FT  V   G    +G   +K+ AEQ AA E L
Sbjct: 194 FTAGVVYRGKVLGRGTGRTKKEAEQHAAREAL 225


>gi|1389549|dbj|BAA10976.1| ORF3 [Bacillus subtilis]
          Length = 266

 Score =  108 bits (271), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 111/224 (49%), Gaps = 7/224 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++   ++RI   F N  LL +A THSS  + ++    E  ERLEFLGD +L L IS  LF
Sbjct: 19  QFKEFQERISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISRFLF 78

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             + +  EG+L+    ++V   +   +A EL     + +             ++ ADV E
Sbjct: 79  PKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFE 138

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178
           + I ALYLD G+E   +F+  Y   + +  G F    D K++LQE+       + EYK++
Sbjct: 139 AFIGALYLDQGLEPVESFLKVYVFPK-INDGAFPHVMDFKSQLQEYVQRDGKGSLEYKIS 197

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              GP H+  F  +V + G     G   SK+ AEQ AA E L +
Sbjct: 198 NEKGPAHNREFEAIVSLKGEPLGVGNGRSKKEAEQHAAQEALAK 241


>gi|167463674|ref|ZP_02328763.1| ribonuclease III [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322382556|ref|ZP_08056436.1| ribonuclease III-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321153472|gb|EFX45877.1| ribonuclease III-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 287

 Score =  108 bits (271), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/216 (34%), Positives = 111/216 (51%), Gaps = 7/216 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
           L+ RIG  F N  LL +A THSS  + ++    +  ERLEFLGD +L L++S  L+  + 
Sbjct: 62  LQARIGITFNNVDLLRQAFTHSSYVNEHRITNHKDNERLEFLGDAVLELMVSEHLYFTYP 121

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGEL+    S+V   +    A  L+  S++ +             ++ AD+ ES I 
Sbjct: 122 RRAEGELTKLRASIVCEPSLVNFAERLNFGSYVLLGKGEEMTGGRTRPALLADLFESFIG 181

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWA-HAKFGVTPEYKVTFRSG 182
           ALYLD G+E    F+ K+        GK    D KT+LQE+  H   G T EY++    G
Sbjct: 182 ALYLDQGLEPVRDFLIKHVFPHISNEGKLLVVDYKTQLQEYVQHHNLG-TLEYRIVEERG 240

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           P H+  F   V++ G    +G+  SK+ AEQ AA++
Sbjct: 241 PAHEREFVAEVQMDGKILGKGVGRSKKEAEQQAASK 276


>gi|225180933|ref|ZP_03734381.1| Ribonuclease III [Dethiobacter alkaliphilus AHT 1]
 gi|225168414|gb|EEG77217.1| Ribonuclease III [Dethiobacter alkaliphilus AHT 1]
          Length = 233

 Score =  108 bits (271), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 70/215 (32%), Positives = 105/215 (48%), Gaps = 12/215 (5%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLFNHFDSA 66
           K++     NR +  +ALTHSS +H +        ERLEFLGD +L L+IS  LF  F   
Sbjct: 11  KQLNIEPKNREIYIQALTHSSYAHEHNLGSHAHNERLEFLGDAVLELVISEALFKRFPLL 70

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+L+     +V  ++  ++A  L+L  ++R+             S+ AD  E+++ A+
Sbjct: 71  PEGKLTRFRAGMVCEDSLFKIANSLELGKYLRLGKGEAASGGRQRPSLLADAFEAMLGAM 130

Query: 127 YLDGGI-----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           YLD G       V G F   +     +  G  R D KT +QE+  A    TPEY++    
Sbjct: 131 YLDQGFYVVQETVTGIFAPLFED---MAKGSMRHDYKTLMQEYTQASLATTPEYRIVAEQ 187

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           GPDH   F   + ++     +G   SK+ AEQ AA
Sbjct: 188 GPDHSKVFVAQLLLNREVYGEGSGRSKKEAEQEAA 222


>gi|116873240|ref|YP_850021.1| ribonuclease III [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|123466444|sp|A0AJR0|RNC_LISW6 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|116742118|emb|CAK21242.1| ribonuclease III [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 229

 Score =  108 bits (271), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 116/218 (53%), Gaps = 7/218 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++  L++ +G+ F +  LL++A THSS  + ++    +  ERLEFLGD +L L +S  LF
Sbjct: 3   QWEELQESVGFDFQDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSNYLF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N +    EG ++    ++V   +  + A  +  + +IR+     K       ++ ADV E
Sbjct: 63  NKYPDMAEGHMTKMRAAIVCEPSLVEFAEAIHFSKYIRLGKGEEKAGGRTRPALLADVFE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178
           S I ALYLD GI+   TF+++    + + +G++ +  D KT+LQE       V  EY + 
Sbjct: 123 SFIGALYLDNGIDKVVTFLERVIFPK-IDAGEYLQTVDYKTQLQEIVQRDRDVLIEYDIL 181

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             +GP H+  F   V ++G    +G   +K+ AEQ AA
Sbjct: 182 GETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAA 219


>gi|89900532|ref|YP_523003.1| ribonuclease III [Rhodoferax ferrireducens T118]
 gi|122479398|sp|Q21XN1|RNC_RHOFD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|89345269|gb|ABD69472.1| RNAse III [Rhodoferax ferrireducens T118]
          Length = 228

 Score =  108 bits (271), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/216 (37%), Positives = 114/216 (52%), Gaps = 6/216 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L+ R+ + F+N  LL +ALTH S S  + E   RLEFLGD +LGL ++ LL+    +  E
Sbjct: 8   LQARLQHEFSNPGLLTRALTHRSFSLDHNE---RLEFLGDSVLGLAVADLLYERLSTLPE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    +LV  +T   +A  L L   IR+     +       SI AD +E++I A+YL
Sbjct: 65  GDLSRVRANLVKQDTLHHLALGLGLPEVIRLGEGEARSGGHKRPSILADALEAVIGAVYL 124

Query: 129 DGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D G  VA   V + ++   +KS      +D KTELQEW   +    P Y+V    G  H 
Sbjct: 125 DAGFAVAQGLVRRLFQAVEIKSDMEAIGKDPKTELQEWLQGRKMNLPLYRVVATLGAAHK 184

Query: 187 PRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221
             F V  EI  L    +G+  S+RA EQ AAA +L+
Sbjct: 185 QTFDVECEIVELNFLERGIGGSRRAGEQAAAAAMLQ 220


>gi|331266250|ref|YP_004325880.1| ribonuclease III [Streptococcus oralis Uo5]
 gi|326682922|emb|CBZ00539.1| ribonuclease III [Streptococcus oralis Uo5]
          Length = 232

 Score =  108 bits (271), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 113/222 (50%), Gaps = 7/222 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62
           + L+KR    FA+++LLE A TH+S ++ ++       ERLEFLGD +L LLIS  L+  
Sbjct: 6   TVLKKRFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLYKK 65

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +    EG+LS     +V  E+ +  AR+     FI++     K       +I  D  E+ 
Sbjct: 66  YPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILGDAFEAF 125

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFR 180
           + AL LD  +     F+ +    + +++G F   +D KT LQE       V   Y+VT  
Sbjct: 126 LGALLLDKDVARVKEFIYQVMIPK-VEAGDFEMIKDYKTHLQELLQVNGDVDIRYQVTSE 184

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +GP HD  F V V + G +  +G   SK+ AEQ AA   +++
Sbjct: 185 TGPAHDKVFDVEVLVEGRSIGKGQGRSKKLAEQEAAKNAVEK 226


>gi|306825115|ref|ZP_07458457.1| ribonuclease III [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304432551|gb|EFM35525.1| ribonuclease III [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 232

 Score =  108 bits (271), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 113/222 (50%), Gaps = 7/222 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62
           + L+KR    FA+++LLE A TH+S ++ ++       ERLEFLGD +L LLIS  L+  
Sbjct: 6   TVLKKRFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLYKK 65

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +    EG+LS     +V  E+ +  AR+     FI++     K       +I  D  E+ 
Sbjct: 66  YPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILGDAFEAF 125

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFR 180
           + AL LD  +     F+ +    + +++G F   +D KT LQE       V   Y+VT  
Sbjct: 126 LGALLLDKDVARVKEFIYQVMIPK-VEAGDFEMIKDYKTHLQELLQVNGDVDIRYQVTSE 184

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +GP HD  F V V + G +  +G   SK+ AEQ AA   +++
Sbjct: 185 TGPAHDKVFDVEVLVEGKSIGKGQGRSKKLAEQEAAKNAVEK 226


>gi|293365563|ref|ZP_06612272.1| ribonuclease III [Streptococcus oralis ATCC 35037]
 gi|315613276|ref|ZP_07888185.1| ribonuclease III [Streptococcus sanguinis ATCC 49296]
 gi|291315931|gb|EFE56375.1| ribonuclease III [Streptococcus oralis ATCC 35037]
 gi|315314511|gb|EFU62554.1| ribonuclease III [Streptococcus sanguinis ATCC 49296]
          Length = 232

 Score =  108 bits (271), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 113/222 (50%), Gaps = 7/222 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62
           + L+KR    FA+++LLE A TH+S ++ ++       ERLEFLGD +L LLIS  L+  
Sbjct: 6   TVLKKRFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLYKK 65

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +    EG+LS     +V  E+ +  AR+     FI++     K       +I  D  E+ 
Sbjct: 66  YPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILGDAFEAF 125

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFR 180
           + AL LD  +     F+ +    + +++G F   +D KT LQE       V   Y+VT  
Sbjct: 126 LGALLLDKDVARVKEFIYQVMIPK-VEAGDFEMIKDYKTHLQELLQVNGDVDIRYQVTSE 184

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +GP HD  F V V + G +  +G   SK+ AEQ AA   +++
Sbjct: 185 TGPAHDKVFDVEVLVEGKSIGKGQGRSKKLAEQEAAKNAVEK 226


>gi|298528053|ref|ZP_07015457.1| ribonuclease III [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511705|gb|EFI35607.1| ribonuclease III [Desulfonatronospira thiodismutans ASO3-1]
          Length = 232

 Score =  108 bits (271), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 114/218 (52%), Gaps = 6/218 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           L+ +IGY + +  LL +ALTHSS ++  + E  ERLEFLGD +L L IS +LF  F  A 
Sbjct: 5   LQDKIGYRYQDPELLVRALTHSSYANERHMEHNERLEFLGDAVLELCISNVLFFRFPRAP 64

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG L+    +LVS  T +++AR L L  +I +             S+ AD +E+++ A+Y
Sbjct: 65  EGHLTRLRAALVSEPTLARLARSLTLGDYIFLGRGEELQGGRDRDSVLADTLEAILGAVY 124

Query: 128 L----DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           L    DG  E      + +   R +++    +D K+ LQE     F   P Y +    GP
Sbjct: 125 LDSGYDGAFECIAALFEDFIPDR-VEALPVSKDFKSRLQEKTQGLFRARPVYTLIDSYGP 183

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +H+  + V VE+      + M  S + AEQ AA++ L+
Sbjct: 184 EHEKIYRVQVELPDGTGIEAMAGSVKKAEQKAASKALE 221


>gi|323700157|ref|ZP_08112069.1| ribonuclease III [Desulfovibrio sp. ND132]
 gi|323460089|gb|EGB15954.1| ribonuclease III [Desulfovibrio desulfuricans ND132]
          Length = 227

 Score =  108 bits (271), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/216 (36%), Positives = 114/216 (52%), Gaps = 8/216 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
           + L+  I + F     LE ALTHSS ++     E  ERLEFLGD +L L IS   F  + 
Sbjct: 4   AALQDCIHHRFGQVKFLETALTHSSFANEQDGFEDNERLEFLGDAVLELCISEEGFKRYP 63

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +A EG+L+   + LV  ++ + +AREL+L  FIR+             ++ AD  E+L+ 
Sbjct: 64  TAHEGQLTRIRSQLVKEQSLAGIARELELDRFIRLGRGEELQGGRERDALLADAFEALLG 123

Query: 125 ALYLDGGIEVA-GTFVDKY---WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           A++LDGG E A  T +D +   W  RA+      +D K+ LQE A   F   P Y ++  
Sbjct: 124 AVFLDGGFEAARRTILDIFEDQWPARAMLPET--KDYKSRLQEVAQDVFRDRPVYVLSGT 181

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           SGP+H+  F V V +      +G+  S + AEQ AA
Sbjct: 182 SGPEHEKLFEVDVTLPNGERFRGLGTSVKRAEQEAA 217


>gi|300814491|ref|ZP_07094752.1| ribonuclease III [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300511409|gb|EFK38648.1| ribonuclease III [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 230

 Score =  108 bits (271), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 120/221 (54%), Gaps = 5/221 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHF 63
           TLEK + Y F N +LL+KALTHSS  +       +S ERLEFLGD +LGL++    +  +
Sbjct: 7   TLEKNLNYFFKNHALLDKALTHSSYVNENNLKSFDSNERLEFLGDAVLGLVMGEYYYKKY 66

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
           +   EGELS   ++ V+    + VA  + L   I       K+   F  SI AD  E+LI
Sbjct: 67  ELYNEGELSKLRSASVNEHALAVVANHIKLGELIHFGKGEIKNGGKFRESILADAFEALI 126

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            A++LD   ++A   +   ++    +   + RD K++LQE+   K   T +Y +T   GP
Sbjct: 127 GAIFLDSSFKIARKVILALFEDIFDEIMLYDRDYKSKLQEFVQ-KDSCTIKYVLTDEIGP 185

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           D+D  F+  V ISG    +GM  +K+ +EQ+AA E LK  G
Sbjct: 186 DNDKTFSSSVLISGKIYGKGMGKTKKKSEQMAAYEALKVLG 226


>gi|239906016|ref|YP_002952755.1| ribonuclease III [Desulfovibrio magneticus RS-1]
 gi|239795880|dbj|BAH74869.1| ribonuclease III [Desulfovibrio magneticus RS-1]
          Length = 243

 Score =  108 bits (271), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 73/211 (34%), Positives = 110/211 (52%), Gaps = 9/211 (4%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           +G+ FA  +LL  ALTHSS ++   E     ERLEFLGD +L L +S  LF+ F  A EG
Sbjct: 22  LGHEFATPALLATALTHSSCANERGEGTRHNERLEFLGDAVLELCVSEELFSLFPEAPEG 81

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           EL++  + LV+  + + +A  L LA  +R+             S+ +DV E+++ A++LD
Sbjct: 82  ELTLLRSQLVNEASLAAMALRLGLAGHVRLGRGEENQGGRSRPSLLSDVFEAVVGAIFLD 141

Query: 130 GGIEVAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           GG   A  FV    D  W +R   +    +D K+ LQE+        P Y +   +GP+H
Sbjct: 142 GGYTAARAFVSRTFDGQWPER--PAAPKIKDFKSRLQEFTQRTHKARPVYALLGSAGPEH 199

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           D RF V + +        ++ S + AEQ AA
Sbjct: 200 DKRFEVRLTLPCGREILAVEKSVKKAEQQAA 230


>gi|16803845|ref|NP_465330.1| ribonuclease III [Listeria monocytogenes EGD-e]
 gi|224501394|ref|ZP_03669701.1| ribonuclease III [Listeria monocytogenes FSL R2-561]
 gi|22654060|sp|Q8Y691|RNC_LISMO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|16411259|emb|CAC99883.1| rncS [Listeria monocytogenes EGD-e]
          Length = 229

 Score =  108 bits (270), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 115/218 (52%), Gaps = 7/218 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++  L++ +G+ F N  LL++A THSS  + ++    +  ERLEFLGD +L L +S  LF
Sbjct: 3   QWEELQESVGFDFKNVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N +    EG ++    ++V   +  + A  +  + ++R+     K       ++ ADV E
Sbjct: 63  NKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178
           S I ALYLD GI+   TF+++    + + +G + +  D KT+LQE       V  EY + 
Sbjct: 123 SFIGALYLDNGIDKVVTFLERVIFPK-IDAGAYLQTVDYKTQLQEIVQRDRDVLIEYDIL 181

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             +GP H+  F   V ++G    +G   +K+ AEQ AA
Sbjct: 182 GETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAA 219


>gi|16078656|ref|NP_389475.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. 168]
 gi|221309468|ref|ZP_03591315.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. 168]
 gi|221313793|ref|ZP_03595598.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. NCIB 3610]
 gi|221318717|ref|ZP_03600011.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221322988|ref|ZP_03604282.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. SMY]
 gi|321315359|ref|YP_004207646.1| ribonuclease III [Bacillus subtilis BSn5]
 gi|7531275|sp|P51833|RNC_BACSU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|2633965|emb|CAB13466.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. 168]
 gi|291484144|dbj|BAI85219.1| ribonuclease III [Bacillus subtilis subsp. natto BEST195]
 gi|320021633|gb|ADV96619.1| ribonuclease III [Bacillus subtilis BSn5]
          Length = 249

 Score =  108 bits (270), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 111/224 (49%), Gaps = 7/224 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++   ++RI   F N  LL +A THSS  + ++    E  ERLEFLGD +L L IS  LF
Sbjct: 19  QFKEFQERISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISRFLF 78

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             + +  EG+L+    ++V   +   +A EL     + +             ++ ADV E
Sbjct: 79  AKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFE 138

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178
           + I ALYLD G+E   +F+  Y   + +  G F    D K++LQE+       + EYK++
Sbjct: 139 AFIGALYLDQGLEPVESFLKVYVFPK-INDGAFSHVMDFKSQLQEYVQRDGKGSLEYKIS 197

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              GP H+  F  +V + G     G   SK+ AEQ AA E L +
Sbjct: 198 NEKGPAHNREFEAIVSLKGEPLGVGNGRSKKEAEQHAAQEALAK 241


>gi|227513461|ref|ZP_03943510.1| ribonuclease III [Lactobacillus buchneri ATCC 11577]
 gi|227524604|ref|ZP_03954653.1| ribonuclease III [Lactobacillus hilgardii ATCC 8290]
 gi|227083334|gb|EEI18646.1| ribonuclease III [Lactobacillus buchneri ATCC 11577]
 gi|227088279|gb|EEI23591.1| ribonuclease III [Lactobacillus hilgardii ATCC 8290]
          Length = 236

 Score =  108 bits (270), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 7/209 (3%)

Query: 19  NRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
           ++ LL++A T +S  + +++     YERLEFLGD +L L++S  +F  +    +G L+  
Sbjct: 19  DQDLLDEAFTQASYVNEHRDQHLKFYERLEFLGDAVLQLIVSEYIFKRYPKLPQGRLTRL 78

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
             ++V+ ++ S  ARE     +IR+     K       S+  D+ ES + ALYLD G +V
Sbjct: 79  RAAMVNEQSFSTFARECHFNKYIRLGKGEEKAGARDRDSLLCDIFESFVGALYLDQGKKV 138

Query: 135 AGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
              FV +    + L  G F +  D KTELQE A A   V  +Y++    GPD+D  F V 
Sbjct: 139 VEGFVQQVIFPK-LDEGMFAKFFDHKTELQELAQADGPVDIDYELVDEYGPDNDRLFKVN 197

Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           V I       G+  SK+ AEQ AA E LK
Sbjct: 198 VAIDDKLLGVGIGHSKKDAEQRAAQEALK 226


>gi|312622598|ref|YP_004024211.1| ribonuclease iii [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203065|gb|ADQ46392.1| ribonuclease III [Caldicellulosiruptor kronotskyensis 2002]
          Length = 222

 Score =  108 bits (270), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 74/216 (34%), Positives = 119/216 (55%), Gaps = 9/216 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +EK +GY F +++LL  ALTH S +HS +  YERLEFLGD  L L +S  LF HF    E
Sbjct: 4   IEKALGYKFKDKNLLRLALTHKSATHSNKNCYERLEFLGDAALELAVSKYLFVHFPELSE 63

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GEL+    ++V ++T S++A +L+L + I      + +      SI ADVVE++  A+++
Sbjct: 64  GELTNIRAAVVCSQTLSKIAEKLNLKNHIIFGKREKMEKFHENKSILADVVEAIFGAIFI 123

Query: 129 DGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           + G E     +    K   Q+A+ +GK   D KT+LQE+   +     + K+ ++     
Sbjct: 124 ESGFEKLEKIIVNLLKPYIQKAV-AGKLFYDYKTKLQEFVQKE----GQKKIVYKDYEII 178

Query: 186 DPR-FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           + + F   + I G   ++G   SK+ A+Q AA + L
Sbjct: 179 EKKYFKSELFIEGKKVSEGYGTSKKEAQQDAAYKFL 214


>gi|224500035|ref|ZP_03668384.1| ribonuclease III [Listeria monocytogenes Finland 1988]
 gi|254831594|ref|ZP_05236249.1| ribonuclease III [Listeria monocytogenes 10403S]
 gi|284802251|ref|YP_003414116.1| hypothetical protein LM5578_2007 [Listeria monocytogenes 08-5578]
 gi|284995393|ref|YP_003417161.1| hypothetical protein LM5923_1958 [Listeria monocytogenes 08-5923]
 gi|284057813|gb|ADB68754.1| hypothetical protein LM5578_2007 [Listeria monocytogenes 08-5578]
 gi|284060860|gb|ADB71799.1| hypothetical protein LM5923_1958 [Listeria monocytogenes 08-5923]
          Length = 229

 Score =  108 bits (270), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 115/218 (52%), Gaps = 7/218 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++  L++ +G+ F N  LL++A THSS  + ++    +  ERLEFLGD +L L +S  LF
Sbjct: 3   QWEELQESVGFDFKNVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N +    EG ++    ++V   +  + A  +  + ++R+     K       ++ ADV E
Sbjct: 63  NKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178
           S I ALYLD GI+   TF+++    + + +G + +  D KT+LQE       V  EY + 
Sbjct: 123 SFIGALYLDNGIDKVVTFLERVIFPK-IDAGAYLQTVDYKTQLQEIVQRDRDVLIEYDIL 181

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             +GP H+  F   V ++G    +G   +K+ AEQ AA
Sbjct: 182 GETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAA 219


>gi|315453268|ref|YP_004073538.1| ribonuclease III [Helicobacter felis ATCC 49179]
 gi|315132320|emb|CBY82948.1| ribonuclease III [Helicobacter felis ATCC 49179]
          Length = 225

 Score =  108 bits (270), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 118/223 (52%), Gaps = 11/223 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L++R+ Y F + +LL++ALTH S    +    ERLEFLGD +L L+++ +L+  F   +E
Sbjct: 5   LQERLAYHFQDMNLLQQALTHKSTKTPHNN--ERLEFLGDAVLDLVVAEILYARFADLQE 62

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    SLV+ +   ++A  L L   I +S     +      SI A+  E+L+ A+YL
Sbjct: 63  GDLSKMRASLVNEKAFFKLASFLQLQDCILISPAEANNHGHTKPSILANAFEALMGAIYL 122

Query: 129 DGGIEVAGT----FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           + G+E   T    F+D  +   +L+S     D K+ LQE   A+F V P Y +   SGPD
Sbjct: 123 ESGLEPIKTLMTRFLDHVYPDLSLQSTFM--DYKSALQELTQARFKVVPTYTLKSESGPD 180

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA---EVLKREG 224
           H  +F + + I           SK+ A+Q+ A    + L+ EG
Sbjct: 181 HAKQFEMQIFILDKLYGTCTAKSKKEAQQLCAQMAYQQLRMEG 223


>gi|255994063|ref|ZP_05427198.1| ribonuclease III [Eubacterium saphenum ATCC 49989]
 gi|255993731|gb|EEU03820.1| ribonuclease III [Eubacterium saphenum ATCC 49989]
          Length = 252

 Score =  108 bits (270), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 73/218 (33%), Positives = 119/218 (54%), Gaps = 11/218 (5%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSI-----SHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           LE +I Y F++R+LL  ALTH S+     +   + + +RLE+LGD IL L+I  LLF   
Sbjct: 7   LETKINYKFSDRNLLITALTHVSMLGKVHNMDRKSTNQRLEYLGDAILYLVIGELLFIKR 66

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG L+   +++V+  + S++A++LDL   I + S   K +     +I AD  E+L+
Sbjct: 67  PDYDEGNLTKARSNIVNNHSLSEMAKKLDLGRHIEMDSSTEKHMGRRNEAILADTFEALM 126

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTP---EYKVT 178
            A++LD G E    F++K + +R  +  +G+ + D KT LQE  HA  G+T    +Y   
Sbjct: 127 GAIFLDAGYEKTHEFINKLFIKRIEEAATGEAKADYKTRLQECVHA-CGITNYYIKYHTI 185

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
              G  H   F +   ++    ++G+  SK+ A+Q AA
Sbjct: 186 SEKGDQHCKTFRIGAYLNNTKLSEGVGKSKKEAQQNAA 223


>gi|257126255|ref|YP_003164369.1| ribonuclease III [Leptotrichia buccalis C-1013-b]
 gi|257050194|gb|ACV39378.1| ribonuclease III [Leptotrichia buccalis C-1013-b]
          Length = 232

 Score =  108 bits (270), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 118/229 (51%), Gaps = 7/229 (3%)

Query: 1   MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLI 55
           M+A + S  L K+IGY F N+  LE+ALTH S S+  +++     E+LEFLGD IL L+ 
Sbjct: 1   MTARKNSKDLIKKIGYEFKNKKYLEEALTHRSYSNEAEKTRRFNNEKLEFLGDAILNLIT 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           +  +++ +    EGEL+   + ++S    S +A ++ L  ++ +S+           SI 
Sbjct: 61  TEYIYDLYGKKTEGELAKLKSQIISEPVFSTIASDIKLGEYLYLSNGEIMSGGRNRRSIL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTP 173
            D  E+LI A++ D     A     K+   K   L+  +   D KT LQE+   K+   P
Sbjct: 121 GDAFEALIGAIFKDSDYYTAKNVALKFLLGKINKLEEIEGTGDYKTILQEFVQGKYKKMP 180

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           EYK+    GPDH+  F + V  +      G   SK+ AE+ AA E L++
Sbjct: 181 EYKLLRTKGPDHNKVFEICVRWNDKIYGIGTGKSKKEAEKHAAKEALEK 229


>gi|282882375|ref|ZP_06291003.1| ribonuclease III [Peptoniphilus lacrimalis 315-B]
 gi|281297796|gb|EFA90264.1| ribonuclease III [Peptoniphilus lacrimalis 315-B]
          Length = 230

 Score =  108 bits (270), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 120/221 (54%), Gaps = 5/221 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHF 63
           TLEK + Y F N +LL+KALTHSS  +       +S ERLEFLGD +LGL++    +  +
Sbjct: 7   TLEKNLNYFFKNHALLDKALTHSSYVNENNLKSFDSNERLEFLGDAVLGLVMGEYYYKKY 66

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
           +   EGELS   ++ V+    + VA  + L   I       K+   F  SI AD  E+LI
Sbjct: 67  ELYNEGELSKLRSASVNEHALAVVANHIKLGELIHFGKGEIKNGGKFRESILADAFEALI 126

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            A++LD   ++A   +   ++    +   + RD K++LQE+   K   T +Y +T   GP
Sbjct: 127 GAVFLDSSFKIARKVILALFEDIFDEIMLYDRDYKSKLQEFVQ-KDSCTIKYVLTDEIGP 185

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           D+D  F+  V ISG    +GM  +K+ +EQ+AA E LK  G
Sbjct: 186 DNDKTFSSSVLISGKIYGKGMGKTKKKSEQMAAYEALKVLG 226


>gi|303326944|ref|ZP_07357386.1| ribonuclease III [Desulfovibrio sp. 3_1_syn3]
 gi|302862932|gb|EFL85864.1| ribonuclease III [Desulfovibrio sp. 3_1_syn3]
          Length = 253

 Score =  108 bits (270), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 114/222 (51%), Gaps = 13/222 (5%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDS 65
           LE+++G+ FA   LL+ ALTHSS ++ Y   Q   ER EFLGD +L L +S  LF  F  
Sbjct: 19  LEEKLGHVFARPELLDLALTHSSWANEYSGGQHHNERQEFLGDAVLELCVSWELFRRFPE 78

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A+EGEL+     LVS  + ++ ARE  L S +++     +       S+ +DV+E+++AA
Sbjct: 79  AREGELTKLRARLVSTVSLAERAREFGLDSLLKLGKGEERQGGRSRDSVLSDVLEAVLAA 138

Query: 126 LYLDGGIEVAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +Y DGG   A   V      +W + A +    R+D KT LQE A   F   P Y      
Sbjct: 139 VYEDGGFTAAQAAVAHIFAPHWPRAAGEPQ--RKDYKTRLQEVAQQLFRERPVYVQLASH 196

Query: 182 GPDHDPRFTVVVEISGLAP--AQGMDCSKRAAEQVAAAEVLK 221
           GP+H   F V + +       A G  C K  AEQ AA + L 
Sbjct: 197 GPEHAKIFEVSLHLPDGREFTASGTSCKK--AEQEAARQALN 236


>gi|295105981|emb|CBL03524.1| RNAse III [Gordonibacter pamelaeae 7-10-1-b]
          Length = 281

 Score =  108 bits (270), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 79/213 (37%), Positives = 107/213 (50%), Gaps = 4/213 (1%)

Query: 15  YAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           Y F +  LL  A+TH S +   S + SYERLEFLGD ILG +++ + F+ F    EG L+
Sbjct: 20  YRFDSEHLLLSAITHPSATEGKSVKYSYERLEFLGDSILGAIVAAIAFHRFHDLDEGGLT 79

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
               +LVS  + S VA  L  A  I   S         + S   +V E+++AALYLDGGI
Sbjct: 80  RIKVALVSGASLSDVADRLGFADVIVFGSSETGTGKRGLHSALENVYEAVVAALYLDGGI 139

Query: 133 EVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
             A  FV++    R +L   +   + K+ LQE      G+TP YK+    GP HD  F  
Sbjct: 140 GAAQEFVERTLIPRMSLDMAREPENPKSALQEKLQED-GITPTYKLVETQGPPHDRTFVA 198

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            V       A+G   +K+ AE  AA   L R G
Sbjct: 199 QVFAGTQGLARGTGRTKKEAESQAAKSTLARLG 231


>gi|218960589|ref|YP_001740364.1| dsRNA-specific ribonuclease [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729246|emb|CAO80157.1| dsRNA-specific ribonuclease [Candidatus Cloacamonas
           acidaminovorans]
          Length = 255

 Score =  108 bits (270), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 113/227 (49%), Gaps = 8/227 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE------SYERLEFLGDRILGLLISTLLF 60
           S L+K+I Y F + +LL  ALTH S  H + E       +ER+EFLGD ILG ++S  LF
Sbjct: 29  SQLQKKIDYTFHDPTLLYAALTHKSYLHRHFEDHKTPSPFERMEFLGDSILGFIVSKELF 88

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                 +EG+LS   + +VS    +  A+ +DL  ++ +S + ++   +   SI +D +E
Sbjct: 89  TRHPDEQEGKLSKLKSKIVSETYLTLKAKAIDLGKYLLLSPEEQQSGGASKPSILSDAME 148

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178
           +LI A+YLD GI  A  F+  +      ++       + K+ LQE+  ++    P Y   
Sbjct: 149 ALICAIYLDSGISAATRFIRNHILNNYQETVTREELVNYKSILQEYMQSRNQPPPTYVTV 208

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
              GP+H   F V V         G   +K+ A Q AA    ++ GI
Sbjct: 209 AEQGPEHHKTFVVEVRWGNKLLGTGKGNTKKNAHQEAARMACQKLGI 255


>gi|152981163|ref|YP_001353060.1| ribonuclease III [Janthinobacterium sp. Marseille]
 gi|151281240|gb|ABR89650.1| ribonuclease III [Janthinobacterium sp. Marseille]
          Length = 322

 Score =  108 bits (269), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 73/215 (33%), Positives = 111/215 (51%), Gaps = 14/215 (6%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L+ R+G+ F +  LL++ALTH S    + E   RLEFLGD IL  ++++LLF+ +    E
Sbjct: 6   LQNRLGHTFKDAVLLQQALTHRSHGSVHNE---RLEFLGDSILNCVVASLLFDRYSKIDE 62

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    +LV  ++  ++A+ L+L+ F+R+     K       SI AD +E+L  A++L
Sbjct: 63  GDLSRLRANLVKQQSLYEIAQRLELSHFLRLGEGELKSGGFRRPSILADTLEALFGAIFL 122

Query: 129 DGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D G + A   +   +     ++      +DAKT LQE+   K    P+Y V    G  H+
Sbjct: 123 DAGFDTARDVIRALYIPILDSVDPKTLGKDAKTLLQEYLQGKKIALPQYNVVATHGAAHN 182

Query: 187 PRFTVVVEISGLAPAQ-----GMDCSKRAAEQVAA 216
             F    EI  L P       G   S+RA EQ AA
Sbjct: 183 QEF----EIECLVPKLDIQVFGTGGSRRAGEQAAA 213


>gi|53804477|ref|YP_113920.1| ribonuclease III [Methylococcus capsulatus str. Bath]
 gi|81682093|sp|Q608M7|RNC_METCA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|53758238|gb|AAU92529.1| ribonuclease III [Methylococcus capsulatus str. Bath]
          Length = 230

 Score =  108 bits (269), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 115/220 (52%), Gaps = 6/220 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           +  L +++G  F +  LL  ALTH S       + ERLEFLGD +LG +++  L+  F S
Sbjct: 5   HEHLARKLGIPFRDPGLLRNALTHRSAEGV---NNERLEFLGDSVLGFVVTEYLYQRFPS 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A EG LS    +LV+  + +++AREL+L  ++ + S   K       SI +D +E+++ A
Sbjct: 62  ADEGVLSRLRATLVNETSLARIARELELGEYLILGSGELKSGGYRRDSILSDALEAILGA 121

Query: 126 LYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +  D GI+     +   +++   AL    +++D KT LQE    +    P Y +  +SG 
Sbjct: 122 VLRDQGIDACRALILTLFERPLSALSLDDWKKDPKTRLQELMQGRGLPLPVYTLIDQSGL 181

Query: 184 DHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKR 222
            HD  F V  E+   + P  G   S++ AEQ AA  +L R
Sbjct: 182 PHDQHFRVRCEVPLAVEPCVGEGSSRKKAEQQAAENMLSR 221


>gi|307298654|ref|ZP_07578457.1| ribonuclease III [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915819|gb|EFN46203.1| ribonuclease III [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 241

 Score =  108 bits (269), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 84/240 (35%), Positives = 130/240 (54%), Gaps = 19/240 (7%)

Query: 1   MSALRYSTLEK--RIGYAFANRSLLEKALTHSSISHSYQ-------ESYERLEFLGDRIL 51
           +SA     +EK  RI    A+R L+ +AL HSS ++          ES ER+EFLGD +L
Sbjct: 2   LSAEEEKLIEKFCRINGIEADRELVFRALCHSSFTNELAQNGERTLESNERMEFLGDAVL 61

Query: 52  GLLISTLLFNHFDSAKEGELSVRFNSLVSAE-TCSQVARELDLASFIRVSSDLRKDVCSF 110
            L ++  L+N +    EGE+S +  ++V +E   S VA+ + +  FI +    R+   + 
Sbjct: 62  ELSLAKTLYNEY-YLTEGEMS-KIRAMVGSEKVLSSVAKTMRIGDFIFLGKGERQTGGAE 119

Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKY---WKQRALKSGKFRRDAKTELQEWAHA 167
             SI AD  E+++AA++L GG+ V+  FV      + +RA++ G+   D KT LQE   A
Sbjct: 120 RDSILADAFEAVLAAIFLTGGLGVSVEFVQSKLSDYIERAVE-GELILDYKTSLQELTQA 178

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA---EVLKREG 224
           +FG  P Y+     GP  +  F V V + G    +G   +K+AAEQ+AA    E+LK+ G
Sbjct: 179 RFGSRPLYETLLDEGPPQEKWFKVGVFLDGSLMGEGEGRTKKAAEQLAAKHALEILKKSG 238


>gi|326791395|ref|YP_004309216.1| ribonuclease III [Clostridium lentocellum DSM 5427]
 gi|326542159|gb|ADZ84018.1| ribonuclease III [Clostridium lentocellum DSM 5427]
          Length = 240

 Score =  108 bits (269), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 110/221 (49%), Gaps = 7/221 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
           +++++ Y F N +LLE+ALTHSS ++ ++    +  ERLEFLGD IL L+IS  LF    
Sbjct: 17  MQRKLSYTFTNSNLLEEALTHSSYANEHRNERVKDNERLEFLGDAILDLIISEYLFKKHP 76

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+LS    S+V   + +++AR + L  +I +             SI AD  E+L  
Sbjct: 77  EMPEGDLSKIRASIVCEASLAKMARFIGLGEYILLGKGEEMTGGRERASILADGFEALTG 136

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AL+LDGG   A  F+      +  +         D KT LQE           Y+V    
Sbjct: 137 ALFLDGGFNEAKCFLTDTLIAQVEQVASLEDLYTDYKTLLQECIQKVSNAPIHYEVVGEE 196

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           GPDHD  F V V    ++  +G+  SK+ AEQ AA + L  
Sbjct: 197 GPDHDKYFYVEVYHDTISLGRGIGKSKKEAEQDAAKKALNN 237


>gi|258544604|ref|ZP_05704838.1| ribonuclease III [Cardiobacterium hominis ATCC 15826]
 gi|258520146|gb|EEV89005.1| ribonuclease III [Cardiobacterium hominis ATCC 15826]
          Length = 221

 Score =  108 bits (269), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 78/215 (36%), Positives = 115/215 (53%), Gaps = 7/215 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE+ + Y F + +LL +ALTH S  HS + + ERLEFLGD +L  + S  ++ +     E
Sbjct: 4   LEQALNYRFTDTALLTRALTHRS--HSAKHN-ERLEFLGDALLETISSIWIYQNRRDVPE 60

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+L+    ++VS E  + +AR L+L   + + S   K   +   SI AD VE+LIAA+YL
Sbjct: 61  GDLTRLRATIVSGENLAAIARRLNLGQHLHLGSGELKSGGARRNSILADAVEALIAAVYL 120

Query: 129 DGGIEVAGTFVDKYWKQ--RALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           D              K    AL     R +DAKT+LQE+   +    P+Y++T  SGP+H
Sbjct: 121 DSDYPTCEHITLALLKDDLSALPQTATRLKDAKTQLQEYLQGRGLPLPDYQITEESGPEH 180

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
              F +    SG   A     S++ AEQ AAA++L
Sbjct: 181 AREFQIEA-TSGDYRAIAHGSSRKKAEQQAAADLL 214


>gi|228992577|ref|ZP_04152504.1| Ribonuclease 3 [Bacillus pseudomycoides DSM 12442]
 gi|228998625|ref|ZP_04158212.1| Ribonuclease 3 [Bacillus mycoides Rock3-17]
 gi|229006125|ref|ZP_04163813.1| Ribonuclease 3 [Bacillus mycoides Rock1-4]
 gi|228755201|gb|EEM04558.1| Ribonuclease 3 [Bacillus mycoides Rock1-4]
 gi|228761093|gb|EEM10052.1| Ribonuclease 3 [Bacillus mycoides Rock3-17]
 gi|228767211|gb|EEM15847.1| Ribonuclease 3 [Bacillus pseudomycoides DSM 12442]
          Length = 245

 Score =  108 bits (269), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 112/223 (50%), Gaps = 7/223 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +   +++IG  F +  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 19  FKMFQQKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A EL   + + +             ++ ADV E+
Sbjct: 79  KYPTMSEGELTKLRAAVVCEPSLVRFANELSFGNLVLLGKGEEMTGGRERPALLADVFEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179
            I ALYLD G+E    F+ +    + +  G F    D K++LQE          EY++  
Sbjct: 139 FIGALYLDQGLETVWEFLKEIVYPK-INEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQ 197

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             GP H+  F   V ++G+A   G   SK+ AEQ AA+E LK+
Sbjct: 198 EKGPAHNREFVSRVTLNGVALGLGSGKSKKEAEQQAASEALKK 240


>gi|296133569|ref|YP_003640816.1| ribonuclease III [Thermincola sp. JR]
 gi|296032147|gb|ADG82915.1| ribonuclease III [Thermincola potens JR]
          Length = 245

 Score =  108 bits (269), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 108/217 (49%), Gaps = 7/217 (3%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +G  + +  LL  ALTHSS +H  +    E  +RLEFLGD +L L+IS  L++ F +  E
Sbjct: 17  MGIDWTSPELLVTALTHSSYAHENKREPIEHNQRLEFLGDAVLELVISEYLYDRFPTYPE 76

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G L+     +V   + + VAR ++L  +I +     +       SI AD +E++  A+YL
Sbjct: 77  GVLTKMRAGIVCESSLASVARAMNLGQYILMGKGEERSGGRNRPSILADAMEAIFGAVYL 136

Query: 129 DGGIEVAGTFVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           D G+E    F+     +   + +  G    D KTELQE    K   T  Y +    GPDH
Sbjct: 137 DQGLETTKLFIINTLSEQISKVVAKGGQTGDYKTELQELVQQKADNTLTYAIIGEEGPDH 196

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +  FT  V   G     G   +K+ AEQ AA + L++
Sbjct: 197 NKVFTAGVYCHGKIWGVGKGRTKKEAEQAAAHDALEK 233


>gi|322375351|ref|ZP_08049864.1| ribonuclease III [Streptococcus sp. C300]
 gi|321279614|gb|EFX56654.1| ribonuclease III [Streptococcus sp. C300]
          Length = 232

 Score =  108 bits (269), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 112/222 (50%), Gaps = 7/222 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62
           + L+KR    FA++ LLE A TH+S ++ ++       ERLEFLGD +L LLIS  L+  
Sbjct: 6   TVLKKRFAIEFADKKLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLYKK 65

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +    EG+LS     +V  E+ +  AR+     FI++     K       +I  D  E+ 
Sbjct: 66  YPRKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILGDAFEAF 125

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFR 180
           + AL LD  +     F+ +    + +++G F   +D KT LQE       V   Y+VT  
Sbjct: 126 LGALLLDKDVARVKEFIYQVMIPK-VEAGDFEMIKDYKTHLQELLQVNGDVDIRYQVTSE 184

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +GP HD  F V V + G +  +G   SK+ AEQ AA   +++
Sbjct: 185 TGPAHDKVFDVEVLVEGKSIGKGQGRSKKLAEQEAAKNAVEK 226


>gi|223937314|ref|ZP_03629220.1| Ribonuclease III [bacterium Ellin514]
 gi|223894099|gb|EEF60554.1| Ribonuclease III [bacterium Ellin514]
          Length = 231

 Score =  108 bits (269), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 71/211 (33%), Positives = 108/211 (51%), Gaps = 11/211 (5%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHF 63
           + L+  +GYAF    LL+ ALTH S++H  +   +  +RLEFLGD +L L+++  L++ F
Sbjct: 5   NNLQTALGYAFRKIELLQLALTHPSVAHEQRTPVQHNQRLEFLGDAVLQLVLTHELYSKF 64

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG L+     LV+    ++  R L+L + + +S            S  AD  E+L+
Sbjct: 65  PDFGEGPLTKARAKLVNRRALAEQGRALNLGAHLILSRGEEAHGGRLRPSALADTFEALL 124

Query: 124 AALYLDGGIEVAGTFV-----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
            A++LDGG E    F+     D   +  AL +     + K ELQE   AK    P+Y V 
Sbjct: 125 GAIFLDGGFEAVEKFLLARFHDMLAEISALPA---LENPKGELQELLQAKSSEAPQYNVV 181

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
             SGPDHD  F  +V+ +G+  A G   SK+
Sbjct: 182 STSGPDHDRVFECIVQHNGVELAHGRGKSKK 212


>gi|332970079|gb|EGK09076.1| ribonuclease III [Kingella kingae ATCC 23330]
          Length = 241

 Score =  108 bits (269), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 77/220 (35%), Positives = 120/220 (54%), Gaps = 10/220 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S+L+ ++GY F   + L++ALTH S +HS  ++YERLEF+GD IL  +I+ +LF  F + 
Sbjct: 11  SSLQTKLGYIFKQPTWLQQALTHRS-AHS--QNYERLEFVGDAILDYVITLMLFEAFPNL 67

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG LSV    LV   T ++VAREL L   + +     K       SI AD +E++ AA+
Sbjct: 68  PEGRLSVLRTHLVKEATLAEVARELGLGKALILGVGELKSGGYDRASILADALEAIFAAI 127

Query: 127 YLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
             D  +  A   + + + +R   ++  +  +D KT LQE   A    TP+Y++  ++G  
Sbjct: 128 RFDADLPTAERVIRQLFAERVQQIQVQQPDKDHKTRLQEALQAHRLPTPKYRIERQTGEG 187

Query: 185 HDPRFTV---VVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            D  F V   + E+  +  A G   S+RAAEQ  A + L+
Sbjct: 188 SDSHFDVSCDLGELGHITYASG--SSRRAAEQECAKQALQ 225


>gi|187477630|ref|YP_785654.1| ribonuclease III [Bordetella avium 197N]
 gi|123514189|sp|Q2KWY0|RNC_BORA1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|115422216|emb|CAJ48740.1| ribonuclease III [Bordetella avium 197N]
          Length = 251

 Score =  108 bits (269), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 74/214 (34%), Positives = 114/214 (53%), Gaps = 8/214 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  +TLE R+G+ F +++LLE+ALTH S  H  + + ERLEFLGD +L  +++ +LF  +
Sbjct: 1   MSLATLETRLGHHFGDQALLEQALTHRS--HGARHN-ERLEFLGDSVLNFVVAAMLFERY 57

Query: 64  DSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
               EG+LS VR N LV   + + +A+ L+L+ ++R+     K       SI AD VE+L
Sbjct: 58  AKLDEGDLSRVRAN-LVKQASLADIAQRLELSPYLRLGEGEMKSGGFRRPSILADAVEAL 116

Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
             A++LD G + A   +++ +      +      +DAKT LQE+   +    P Y V   
Sbjct: 117 FGAVFLDAGFDAARKVIEQQYVPVLANVDPETLGKDAKTLLQEFLQGRKLALPLYTVVAT 176

Query: 181 SGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQ 213
            G  H  +F V   I  L         S+RAAEQ
Sbjct: 177 HGAAHSQQFEVECAIPALEIKVTAAGASRRAAEQ 210


>gi|256544903|ref|ZP_05472274.1| ribonuclease III [Anaerococcus vaginalis ATCC 51170]
 gi|256399402|gb|EEU13008.1| ribonuclease III [Anaerococcus vaginalis ATCC 51170]
          Length = 238

 Score =  108 bits (269), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 72/215 (33%), Positives = 119/215 (55%), Gaps = 7/215 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSS-ISHSYQE---SYERLEFLGDRILGLLISTLLFNHFD 64
           LE+ IGY F N++L++ ALTHSS I+ S  E   S ERLEFLGD IL L++S  L+ +  
Sbjct: 14  LEESIGYTFKNKNLIDVALTHSSYINESKDENKSSNERLEFLGDSILDLIVSEELYKNHK 73

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EG+L+   + +V   + S+ + + +L+S++               S++AD  E+  A
Sbjct: 74  TYPEGKLTKIRSRIVCTSSFSKASEKFNLSSYLLFGKGEESHNGREKKSVKADTFEAFCA 133

Query: 125 ALYLDGGIEVAGTFVDK-YWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           A+YLD G +    F+ K Y++  +  L++     D KT+LQE+ +    +  +YK+    
Sbjct: 134 AIYLDAGYDFLKDFLMKNYYEIVKELLENDLLFIDYKTKLQEYFNKTNRIILKYKLVKEE 193

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           GP+H+  F + V       + G   +K+ AEQ+AA
Sbjct: 194 GPEHNKTFYMEVSAKNKKLSTGKGKNKKEAEQMAA 228


>gi|134095253|ref|YP_001100328.1| RNase III, ds RNA (partial match) [Herminiimonas arsenicoxydans]
 gi|133739156|emb|CAL62205.1| Ribonuclease III [Herminiimonas arsenicoxydans]
          Length = 328

 Score =  108 bits (269), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 73/215 (33%), Positives = 111/215 (51%), Gaps = 14/215 (6%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L+ R+G+ F +  L+++ALTH S S  + E   RLEFLGD IL  ++++LLF+ +    E
Sbjct: 6   LQNRLGHTFKDAVLMQQALTHRSHSSVHNE---RLEFLGDSILNCVVASLLFDRYSKIDE 62

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    +LV  ++  ++A+ L+L+ F+R+     K       SI AD +E+L  A++L
Sbjct: 63  GDLSRLRANLVKQQSLYEIAQRLELSQFLRLGEGELKSGGFRRPSILADTLEALFGAIFL 122

Query: 129 DGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D G   A   +   +     ++      +DAKT LQE+   K    P+Y V    G  H+
Sbjct: 123 DAGFNAARDVIRALYIPILDSVDPKTLGKDAKTLLQEYLQGKKIALPQYNVVATHGAAHN 182

Query: 187 PRFTVVVEISGLAPAQ-----GMDCSKRAAEQVAA 216
             F    EI  L P       G   S+RA EQ AA
Sbjct: 183 QEF----EIECLVPKLDIQVFGTGGSRRAGEQAAA 213


>gi|153954021|ref|YP_001394786.1| ribonuclease III [Clostridium kluyveri DSM 555]
 gi|219854635|ref|YP_002471757.1| hypothetical protein CKR_1292 [Clostridium kluyveri NBRC 12016]
 gi|189043304|sp|A5N807|RNC_CLOK5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807246|sp|B9E1G8|RNC_CLOK1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|146346902|gb|EDK33438.1| Hypothetical protein CKL_1396 [Clostridium kluyveri DSM 555]
 gi|219568359|dbj|BAH06343.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 244

 Score =  108 bits (269), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 122/222 (54%), Gaps = 6/222 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
           +  +EK +  +F ++ L++ ALTHSS ++  +  +  ER+EFLGD +L L IS  LF  +
Sbjct: 7   FEEVEKTLNISFNDKELIDTALTHSSYANGKKGVKFNERMEFLGDSVLQLCISEYLFLIY 66

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            S  EGEL+ + + +V   +  +VA++ ++  +I++S           TSI A+ VE++I
Sbjct: 67  KSKSEGELTKKRSLIVCENSLYEVAKKWNIGKYIKMSKGEEITGGRERTSILANCVEAII 126

Query: 124 AALYLDGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           AA+Y+D G +    F+   +K   ++A+K+ +   D KT LQE       +  EY +   
Sbjct: 127 AAIYIDSGYKKTKQFIIDNFKDIIEKAIKN-QIVLDYKTNLQEIVQQDGDIHIEYMLIKY 185

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            GP H  +F   V ++      G+  +K+ +EQ AA + LK+
Sbjct: 186 EGPPHRRKFYTKVCVANNVMGSGVGYTKKESEQNAAQDALKK 227


>gi|266623888|ref|ZP_06116823.1| ribonuclease III [Clostridium hathewayi DSM 13479]
 gi|288864294|gb|EFC96592.1| ribonuclease III [Clostridium hathewayi DSM 13479]
          Length = 229

 Score =  107 bits (268), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 70/212 (33%), Positives = 113/212 (53%), Gaps = 5/212 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
           LE RIGY F +R LL +A+THSS ++ ++    E  ERLEFLGD +L ++ S  L++ + 
Sbjct: 8   LEGRIGYRFTDRQLLTQAMTHSSYANEHRLNKLECNERLEFLGDSVLEVVSSDFLYHKYP 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+L+    S+V   T +  A ++DL +++ +             S+ +D +E+LI 
Sbjct: 68  ERPEGDLTKIRASIVCEPTLAYCAEDIDLGAYLLLGKGEEATGGRGRASVVSDAMEALIG 127

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A+YLDGG   A  F+ ++     ++  +   D+KT LQE   ++      Y++    GPD
Sbjct: 128 AIYLDGGFANAKEFILRFI-MNDIEHKQLFFDSKTILQEIVQSQTDQPLAYELLREEGPD 186

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           H+  F     I      +G   +K+AAE VAA
Sbjct: 187 HNKLFESRALIGEEEIGRGTGRTKKAAEAVAA 218


>gi|221068688|ref|ZP_03544793.1| Ribonuclease III [Comamonas testosteroni KF-1]
 gi|264677118|ref|YP_003277024.1| ribonuclease III [Comamonas testosteroni CNB-2]
 gi|299530659|ref|ZP_07044074.1| ribonuclease III [Comamonas testosteroni S44]
 gi|220713711|gb|EED69079.1| Ribonuclease III [Comamonas testosteroni KF-1]
 gi|262207630|gb|ACY31728.1| ribonuclease III [Comamonas testosteroni CNB-2]
 gi|298721175|gb|EFI62117.1| ribonuclease III [Comamonas testosteroni S44]
          Length = 227

 Score =  107 bits (268), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 82/211 (38%), Positives = 110/211 (52%), Gaps = 10/211 (4%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            L++R+ + FAN +LL++A+TH S S    ++ ERLEFLGD +L L IS+LL+    S  
Sbjct: 7   ALQQRLQHQFANPALLQRAITHRSFS---ADNNERLEFLGDSVLSLAISSLLYAKLASMP 63

Query: 68  EGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           EG+LS VR N LV   T  ++A +L L   +R+     K       SI AD VE+LI A+
Sbjct: 64  EGDLSRVRAN-LVKEGTLHKIALKLQLPDLLRLGEGEAKSGGKQRPSILADAVEALIGAV 122

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           YLD G   AG  V  +  +    +   R   +D KT LQE    K    P+Y V   SG 
Sbjct: 123 YLDAGF-AAGEKVVHHLFEGVDINPHMRAADKDPKTALQELLQGKRMKLPQYHVVEISGA 181

Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSKRAAEQ 213
            H   F V   I+     AQG   S+R  EQ
Sbjct: 182 AHKQTFKVECTIAEWNISAQGSGASRRMGEQ 212


>gi|308173556|ref|YP_003920261.1| ribonuclease III [Bacillus amyloliquefaciens DSM 7]
 gi|307606420|emb|CBI42791.1| ribonuclease III [Bacillus amyloliquefaciens DSM 7]
 gi|328553511|gb|AEB24003.1| ribonuclease III [Bacillus amyloliquefaciens TA208]
 gi|328911697|gb|AEB63293.1| ribonuclease III [Bacillus amyloliquefaciens LL3]
          Length = 249

 Score =  107 bits (268), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 110/224 (49%), Gaps = 7/224 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++   ++RI   F N  LL +A THSS  + ++    E  ERLEFLGD +L L IS  LF
Sbjct: 19  QFKEFQERISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLF 78

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             + +  EG+L+    ++V   +   +A EL     + +             ++ ADV E
Sbjct: 79  AKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFE 138

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178
           + I ALYLD G+E    F+  Y   + +  G F    D K++LQE+       + EYK+ 
Sbjct: 139 AFIGALYLDQGLEPVQQFLKVYVFPK-INDGAFSHVMDFKSQLQEFVQRDGKGSLEYKIL 197

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              GP H+  F  +V + G A   G   SK+ AEQ AA E L +
Sbjct: 198 NEKGPAHNREFEALVSLKGEALGIGNGRSKKEAEQHAAQEALAK 241


>gi|284006739|emb|CBA71996.1| ribonuclease III [Arsenophonus nasoniae]
          Length = 204

 Score =  107 bits (268), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 72/202 (35%), Positives = 110/202 (54%), Gaps = 6/202 (2%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           +++ALTH S S  + E   RLEFLGD IL  +I+  L++ F    EG++S    +LV   
Sbjct: 1   MKQALTHRSASSGHNE---RLEFLGDSILSFVIANDLYHRFPKVDEGDMSRMRATLVRGN 57

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
           T +++ARE DL   +R+     K       SI AD +E+LI +++LD  I+     V  +
Sbjct: 58  TLAELAREFDLGECLRLGPGELKSGGFRRESILADTIEALIGSIFLDSDIQTTERIVLAW 117

Query: 143 WKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA- 199
           +  R ++   G  ++D KT LQE+   +    P Y V    G  HD  FT+  ++SG+  
Sbjct: 118 YDTRLIEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVRVRGEAHDQEFTIHCQVSGIKE 177

Query: 200 PAQGMDCSKRAAEQVAAAEVLK 221
           P +G+  S+R AEQ AA + LK
Sbjct: 178 PVEGVGSSRRKAEQAAAEQALK 199


>gi|315924201|ref|ZP_07920427.1| ribonuclease III [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315622603|gb|EFV02558.1| ribonuclease III [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 229

 Score =  107 bits (268), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 79/231 (34%), Positives = 124/231 (53%), Gaps = 25/231 (10%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M AL+   L++ IGY F N++ L +ALTHSS  +S +++ ERLE+LGD +L L IS  LF
Sbjct: 1   MEALK---LQQSIGYIFKNQAYLHEALTHSSHGNS-EKNNERLEYLGDAVLELSISDYLF 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA---D 117
            HFD   EG+++    S+V +E+ SQ AR L L +++ +    + +V S   S Q+   +
Sbjct: 57  KHFD-FDEGKMTKLRASIVCSESLSQAARRLHLGNYLHLG---KGEVISGGRSRQSILEN 112

Query: 118 VVESLIAALYLDG--------GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKF 169
             E+++ A++LD          IE+    ++         +G+   D KT LQE    + 
Sbjct: 113 AFEAMLGAIFLDSDYSTSQKKAIELLSDNIEMAI------AGRLTNDYKTALQELIQKQS 166

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
               EY +    GP+HD  F V + I+G   + G   +K+ AEQ AA + L
Sbjct: 167 DHVIEYVLDKADGPEHDKTFFVTLMINGQMSSNGRGKTKKEAEQQAAKKSL 217


>gi|227510452|ref|ZP_03940501.1| ribonuclease III [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227190104|gb|EEI70171.1| ribonuclease III [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 236

 Score =  107 bits (268), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 74/209 (35%), Positives = 109/209 (52%), Gaps = 7/209 (3%)

Query: 19  NRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
           ++ LL++A T +S  + +++     YERLEFLGD +L L++S  +F  +    +G L+  
Sbjct: 19  DQDLLDEAFTQASYVNEHRDQHLKFYERLEFLGDAVLQLIVSEYIFKRYPKLPQGRLTRL 78

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
             ++V+ ++ S  ARE     +IR+     K       S+  D+ ES + ALYLD G  V
Sbjct: 79  RAAMVNEQSFSTFARECHFNKYIRLGKGEEKAGARDRDSLLCDIFESFVGALYLDQGKTV 138

Query: 135 AGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
              FV +    + L  G F +  D KTELQE A A   V  +Y++    GPD+D  F V 
Sbjct: 139 VEGFVQQVIFPK-LDEGMFAKFFDHKTELQELAQADGPVDIDYELVDEYGPDNDRLFKVN 197

Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           V I       G+  SK+ AEQ AA E LK
Sbjct: 198 VAIDDKLLGVGIGHSKKDAEQRAAQEALK 226


>gi|198283249|ref|YP_002219570.1| Ribonuclease III [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218665431|ref|YP_002425832.1| ribonuclease III [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247770|gb|ACH83363.1| Ribonuclease III [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218517644|gb|ACK78230.1| ribonuclease III [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 226

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/216 (35%), Positives = 110/216 (50%), Gaps = 7/216 (3%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           +L++ +GY F  +SLL +ALTH S    + E   RLEFLGD  L  +++  LF  F    
Sbjct: 6   SLQQSVGYQFREQSLLLQALTHRSAGARHNE---RLEFLGDAALNFVVAAKLFARFPKVS 62

Query: 68  EGELSVRFNSLVSAETCSQVARELDLA-SFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           EG+LS     LV  ET +++A ++ LA S I    ++R    +   SI+AD +E++I A 
Sbjct: 63  EGDLSRMRARLVREETLAEIAGKIALADSLILGPGEIRSG-GARRDSIRADALEAVIGAA 121

Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           +LDGG   A   V +  +        G+  RD KT LQE+   +    P Y      G  
Sbjct: 122 FLDGGFGAAERIVAQLVEPLMTDDLGGEELRDPKTRLQEFLQGQGRPVPVYTTVAEKGQA 181

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           H+ RF     + G    +  D S+R AEQ AAA +L
Sbjct: 182 HERRFVARCSVPGAEATEAEDGSRRKAEQQAAALML 217


>gi|311104757|ref|YP_003977610.1| ribonuclease III [Achromobacter xylosoxidans A8]
 gi|310759446|gb|ADP14895.1| ribonuclease III [Achromobacter xylosoxidans A8]
          Length = 253

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/214 (33%), Positives = 115/214 (53%), Gaps = 14/214 (6%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           +TLE R+ + F++ +LLE+ALTH S  H  + + ERLEFLGD +L  +++ +LF  +   
Sbjct: 4   ATLENRLDHHFSDPALLEQALTHRS--HGARHN-ERLEFLGDSVLNFVVAAMLFERYSKI 60

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+LS    +LV   + + +A+ L+L+ ++R+     K       SI AD VE+L  A+
Sbjct: 61  DEGDLSRLRANLVKQASLADIAQRLELSQYLRLGEGELKSGGFRRPSILADTVEALFGAV 120

Query: 127 YLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           +LD G + A   + + ++    ++      +DAKT LQE+   +    P Y V    G  
Sbjct: 121 FLDAGFDAARRVIVRQYQPVLASVDPKTLGKDAKTLLQEFLQGRKLALPLYTVVATHGAA 180

Query: 185 HDPRFTV-----VVEISGLAPAQGMDCSKRAAEQ 213
           H  +F V      +EI  +AP      S+RAAEQ
Sbjct: 181 HSQQFEVECAIPALEIKVMAPG----ASRRAAEQ 210


>gi|269121067|ref|YP_003309244.1| ribonuclease III [Sebaldella termitidis ATCC 33386]
 gi|268614945|gb|ACZ09313.1| ribonuclease III [Sebaldella termitidis ATCC 33386]
          Length = 231

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 114/224 (50%), Gaps = 6/224 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M   +   L ++IGY F +  LL++AL H S ++ + E    + ERLEFLGD +L L+ +
Sbjct: 1   MDDSKLRELMEKIGYEFDDIKLLKEALIHRSYANEHGEIENINNERLEFLGDAVLDLIST 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             ++       EG+L+   + ++S    S V++E+ L  ++ +S+           SI  
Sbjct: 61  EYIYTKEKDDNEGDLAKLKSRIISEPIFSAVSKEIALGEYLFLSNGEEITGGRDRKSILG 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPE 174
           D  E+LI A+++D G + A     KY K +          +D KT LQE   +KF + P 
Sbjct: 121 DAFEALIGAIFMDSGFDEAKRIALKYLKDKIDNIDDLEELKDYKTLLQELFQSKFHIIPN 180

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           Y++    GPDH+ +F + V++       G   SK+ AE+ AA E
Sbjct: 181 YEILSEKGPDHNKKFEIAVKLKEEIVGIGTGTSKKEAEKNAARE 224


>gi|317401886|gb|EFV82493.1| ribonuclease 3 [Achromobacter xylosoxidans C54]
          Length = 253

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 115/220 (52%), Gaps = 14/220 (6%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  +TLE R+ + F + +LLE+ALTH S  H  + + ERLEFLGD +L  +++ +LF  +
Sbjct: 1   MSLATLENRLDHHFGDPALLEQALTHRS--HGARHN-ERLEFLGDSVLNFVVAAMLFERY 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV   + + +A+ L+L+ ++R+     K       SI AD VE+L 
Sbjct: 58  SKIDEGDLSRLRANLVKQASLADIAQRLELSQYLRLGEGELKSGGFRRPSILADTVEALF 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LD G + A   + + ++    ++      +DAKT LQE+   +    P Y V    
Sbjct: 118 GAVFLDAGFDAARRVIVRQYQPVLASVDPKTLGKDAKTLLQEFLQGRKLALPVYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGL-----APAQGMDCSKRAAEQVAA 216
           G  H  +F V   I  L     AP      S+RAAEQ AA
Sbjct: 178 GAAHSQQFEVECAIPALEIKVNAPG----ASRRAAEQSAA 213


>gi|171780118|ref|ZP_02921022.1| hypothetical protein STRINF_01906 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281466|gb|EDT46901.1| hypothetical protein STRINF_01906 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 228

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/226 (34%), Positives = 120/226 (53%), Gaps = 8/226 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M AL  + L++  G AF +++LLE A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MQALD-TKLQRDFGIAFEDKTLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  +    EG+LS   + +V  E+ +  +R      FI++ +   K       +I  
Sbjct: 60  QYLFKKYPKKPEGDLSKMRSVIVREESLAGFSRYCGFDEFIKLGNGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D+ E+ + AL +D G+E    F+++    +  K G F R  D KT LQE       VT +
Sbjct: 120 DLFEAFLGALLMDQGVEAVNKFLNQVMIPQVEK-GNFERVKDYKTTLQELLQGHSDVTID 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           Y+V+  SGP H   F V V ++  A ++G+  SK+ AEQ AA   L
Sbjct: 179 YRVSSESGPAHAKVFEVTVYVNDEAKSKGIGKSKKLAEQDAAKNAL 224


>gi|148244713|ref|YP_001219407.1| ribonuclease III [Candidatus Vesicomyosocius okutanii HA]
 gi|146326540|dbj|BAF61683.1| ribonuclease III [Candidatus Vesicomyosocius okutanii HA]
          Length = 221

 Score =  107 bits (267), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/218 (34%), Positives = 114/218 (52%), Gaps = 8/218 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L+K+I Y F + SLL+ ALTH S   +   + ERLEFLGD ILG+ IS  L+  F    E
Sbjct: 4   LQKKINYQFKDLSLLKLALTHRSTGRN---NNERLEFLGDSILGVAISKELYQRFPCVDE 60

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS   + L+  +T  Q+   L+L++ + + S   K       SIQAD VE++  A+ L
Sbjct: 61  GKLSRLRSHLIRGQTLVQLGTALELSNNLILGSGELKSGGYRRESIQADTVEAIFGAVLL 120

Query: 129 DGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D   E     +   +K    ++      +D+KT+LQE+   +  + P+YK+   +G DH+
Sbjct: 121 DSNFETTNMVILGLFKVLLNSISPDDSLKDSKTQLQEYLQKRGNILPKYKLIDTTGKDHN 180

Query: 187 PRFTV--VVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             F V   +E   L   Q     K+ AEQ  A  +LK+
Sbjct: 181 AIFMVNCFLEDQKLQVKQSAKSIKK-AEQFCAQILLKK 217


>gi|42526537|ref|NP_971635.1| ribonuclease III [Treponema denticola ATCC 35405]
 gi|81412559|sp|Q73NX5|RNC_TREDE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|41816730|gb|AAS11516.1| ribonuclease III [Treponema denticola ATCC 35405]
 gi|325473478|gb|EGC76673.1| ribonuclease 3 [Treponema denticola F0402]
          Length = 246

 Score =  107 bits (267), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/215 (33%), Positives = 114/215 (53%), Gaps = 9/215 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISH---SYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            +K+ G  F +  LL+ A  H S S+   ++  + ERLEFLGD +LGL+ ++ L+  F+ 
Sbjct: 19  FQKQAGLKFKDLRLLDLAFHHRSFSNEHNNFHANNERLEFLGDSVLGLVAASYLYKSFED 78

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGEL+    S VS +  S+ A +L++++++ +             +I AD +E++I A
Sbjct: 79  RPEGELAKIKASAVSEDALSKTASKLNISNYLVLGRGEEMSGGREKKAILADALEAVIGA 138

Query: 126 LYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            Y+D G + A  FV +  +    ++   KF  D K+ LQE    KF   P+Y++   SGP
Sbjct: 139 YYIDSGFKAAQKFVLRLLESTIHSVLEKKFISDYKSLLQELVQKKFKTVPKYELKKASGP 198

Query: 184 DHDPRFTVVVEISG--LAPAQGMDCSKRAAEQVAA 216
           DHD  F   V I+G    P  G   +K+ AEQ  A
Sbjct: 199 DHDRTFWFSVSINGKVYGPLSGK--TKKEAEQSVA 231


>gi|237750847|ref|ZP_04581327.1| ribonuclease III [Helicobacter bilis ATCC 43879]
 gi|229373292|gb|EEO23683.1| ribonuclease III [Helicobacter bilis ATCC 43879]
          Length = 228

 Score =  107 bits (267), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 103/199 (51%), Gaps = 5/199 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE+++ Y F N+  L +AL H S    Y    ERLEFLGD +L L++   LF  F    E
Sbjct: 12  LEQKLNYTFKNKKKLAEALAHKSFKKPYNN--ERLEFLGDAVLDLVVGEYLFETFTQKNE 69

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G LS    SLV+  +  ++A+ ++L  ++ +S+    +      SI ++  E+++A +YL
Sbjct: 70  GSLSKMRASLVNEASFCKLAQSINLGEYLNLSTSEINNGGRLKASILSNAFEAIMAVIYL 129

Query: 129 DGGIE-VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           + G++ V   F      +  +       D K+ LQE+   +FG  P Y++  + GPDH  
Sbjct: 130 ESGLDSVKRVFYPILHNEFRINEELLTSDYKSSLQEYTQERFGCIPSYEMLSQEGPDHKK 189

Query: 188 RFTVVVEISG--LAPAQGM 204
            FT+ V+I     A A G+
Sbjct: 190 IFTMQVKIQNKIYASANGV 208


>gi|331701485|ref|YP_004398444.1| ribonuclease 3 [Lactobacillus buchneri NRRL B-30929]
 gi|329128828|gb|AEB73381.1| Ribonuclease 3 [Lactobacillus buchneri NRRL B-30929]
          Length = 236

 Score =  107 bits (267), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 112/220 (50%), Gaps = 7/220 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
           L++  G    ++ LL++A T +S  + ++    + YERLEFLGD +L L++S  +F  + 
Sbjct: 9   LKQDFGIHIDDQDLLDEAFTQASYVNEHRGEGLKFYERLEFLGDAVLQLIVSDYIFKRYP 68

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              +G L+    ++V+ ++ S  ARE     +IR+     K       S+  D+ ES + 
Sbjct: 69  KMPQGRLTRLRAAMVNEQSFSTFARECHFNQYIRLGKGEEKAGARDRDSLLCDIFESFVG 128

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182
            LYLD G      FV K    + L  G F    D KTELQE A A   V  +Y++    G
Sbjct: 129 CLYLDQGQAEVTRFVTKVIFPK-LDEGMFAEFFDHKTELQELAQADGPVAIDYELVDEYG 187

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           PD+D  F V V I G     G+  SK+ AEQ AA + L++
Sbjct: 188 PDNDRSFKVNVSIDGKLYGVGIGHSKKGAEQKAAQQALEQ 227


>gi|241662605|ref|YP_002980965.1| ribonuclease III [Ralstonia pickettii 12D]
 gi|309781187|ref|ZP_07675924.1| ribonuclease III [Ralstonia sp. 5_7_47FAA]
 gi|240864632|gb|ACS62293.1| ribonuclease III [Ralstonia pickettii 12D]
 gi|308920008|gb|EFP65668.1| ribonuclease III [Ralstonia sp. 5_7_47FAA]
          Length = 256

 Score =  107 bits (267), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/212 (36%), Positives = 110/212 (51%), Gaps = 8/212 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L++R+GY F+   LL++ALTH S  HS   + ERLEFLGD IL   ++ +L+  F    E
Sbjct: 6   LQQRLGYRFSKPELLQQALTHRS--HSAMHN-ERLEFLGDSILNCAVADMLYGMFGKLDE 62

Query: 69  GELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           G+LS VR N LV  +   ++A+ L L   +R+     K       SI AD +E++  A++
Sbjct: 63  GDLSRVRAN-LVKQQALYEIAQMLQLPDALRLGEGELKSGGFRRPSILADALEAIFGAVF 121

Query: 128 LDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           LDGG + A T + K +      +      +DAKT LQE+        P Y V    G  H
Sbjct: 122 LDGGFDAARTLIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPLYTVVATHGAAH 181

Query: 186 DPRFTVVVEISGLA-PAQGMDCSKRAAEQVAA 216
           + +F V   I  L     G   S+RAAEQ AA
Sbjct: 182 NQQFEVECSIPKLEIRVSGSGASRRAAEQSAA 213


>gi|167948160|ref|ZP_02535234.1| ribonuclease III [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 225

 Score =  107 bits (267), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/187 (36%), Positives = 102/187 (54%), Gaps = 5/187 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S+L + +GY F N +LL++ALTH S+     ++ ER EFLGD ILG +I+  LF  F+ A
Sbjct: 6   SSLCRALGYEFHNPALLQQALTHRSVGG---KNNERFEFLGDAILGFVIADALFEQFERA 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+LS   +SLV  ET +++AR L L   +R+     +       SI AD VE+++AA+
Sbjct: 63  SEGQLSRLRSSLVKRETLAKIARGLKLGDHLRLGPGELRSGGQTRDSILADAVEAILAAI 122

Query: 127 YLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD         + + ++     L     ++D KT LQE   A+    P Y+V   +G  
Sbjct: 123 YLDSDYSTTRRVILQIFESLLTGLDLNTQQKDPKTRLQEHLQARKIGLPSYQVIDITGDQ 182

Query: 185 HDPRFTV 191
           H   FTV
Sbjct: 183 HAQTFTV 189


>gi|187928023|ref|YP_001898510.1| ribonuclease III [Ralstonia pickettii 12J]
 gi|238691793|sp|B2U981|RNC_RALPJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|187724913|gb|ACD26078.1| Ribonuclease III [Ralstonia pickettii 12J]
          Length = 256

 Score =  107 bits (267), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/212 (36%), Positives = 110/212 (51%), Gaps = 8/212 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L++R+GY F+   LL++ALTH S  HS   + ERLEFLGD IL   ++ +L+  F    E
Sbjct: 6   LQQRLGYRFSKPELLQQALTHRS--HSAMHN-ERLEFLGDSILNCAVADMLYGMFGKLDE 62

Query: 69  GELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           G+LS VR N LV  +   ++A+ L L   +R+     K       SI AD +E++  A++
Sbjct: 63  GDLSRVRAN-LVKQQALYEIAQMLQLPDALRLGEGELKSGGFRRPSILADALEAIFGAVF 121

Query: 128 LDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           LDGG + A T + K +      +      +DAKT LQE+        P Y V    G  H
Sbjct: 122 LDGGFDAARTLIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPLYTVVATHGAAH 181

Query: 186 DPRFTVVVEISGLA-PAQGMDCSKRAAEQVAA 216
           + +F V   I  L     G   S+RAAEQ AA
Sbjct: 182 NQQFEVECSIPKLEIRVSGSGASRRAAEQSAA 213


>gi|293406009|ref|ZP_06650001.1| rnc [Escherichia coli FVEC1412]
 gi|306814369|ref|ZP_07448531.1| ribonuclease III [Escherichia coli NC101]
 gi|291428217|gb|EFF01244.1| rnc [Escherichia coli FVEC1412]
 gi|305851763|gb|EFM52215.1| ribonuclease III [Escherichia coli NC101]
 gi|313648245|gb|EFS12689.1| ribonuclease III [Shigella flexneri 2a str. 2457T]
 gi|320176131|gb|EFW51198.1| Ribonuclease III [Shigella dysenteriae CDC 74-1112]
 gi|320662723|gb|EFX30062.1| ribonuclease III [Escherichia coli O55:H7 str. USDA 5905]
 gi|323156225|gb|EFZ42384.1| ribonuclease III [Escherichia coli EPECa14]
 gi|323173115|gb|EFZ58746.1| ribonuclease III [Escherichia coli LT-68]
 gi|323177303|gb|EFZ62891.1| ribonuclease III [Escherichia coli 1180]
 gi|326345056|gb|EGD68800.1| Ribonuclease III [Escherichia coli O157:H7 str. 1044]
 gi|332092616|gb|EGI97688.1| ribonuclease III [Shigella boydii 3594-74]
 gi|333000427|gb|EGK20009.1| ribonuclease III [Shigella flexneri VA-6]
 gi|333000857|gb|EGK20429.1| ribonuclease III [Shigella flexneri K-218]
 gi|333001660|gb|EGK21227.1| ribonuclease III [Shigella flexneri K-272]
 gi|333015936|gb|EGK35271.1| ribonuclease III [Shigella flexneri K-227]
 gi|333016828|gb|EGK36154.1| ribonuclease III [Shigella flexneri K-304]
          Length = 204

 Score =  107 bits (267), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/203 (35%), Positives = 109/203 (53%), Gaps = 6/203 (2%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           +++ALTH S S  + E   RLEFLGD IL  +I+  L++ F    EG++S    +LV   
Sbjct: 1   MQQALTHRSASSKHNE---RLEFLGDSILSYVIANALYHRFPRVDEGDMSRMRATLVRGN 57

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
           T +++ARE +L   +R+     K       SI AD VE+LI  ++LD  I+     +  +
Sbjct: 58  TLAELAREFELGECLRLGPGELKSGGFRRESILADTVEALIGGVFLDSDIQTVEKLILNW 117

Query: 143 WKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA- 199
           ++ R   +  G  ++D KT LQE+   +    P Y V    G  HD  FT+  ++SGL+ 
Sbjct: 118 YQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPTYLVVQVRGEAHDQEFTIHCQVSGLSE 177

Query: 200 PAQGMDCSKRAAEQVAAAEVLKR 222
           P  G   S+R AEQ AA + LK+
Sbjct: 178 PVVGTGSSRRKAEQAAAEQALKK 200


>gi|293394829|ref|ZP_06639119.1| ribonuclease III [Serratia odorifera DSM 4582]
 gi|291422580|gb|EFE95819.1| ribonuclease III [Serratia odorifera DSM 4582]
          Length = 204

 Score =  107 bits (267), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/201 (36%), Positives = 107/201 (53%), Gaps = 6/201 (2%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
           +ALTH S S  + E   RLEFLGD IL  +I+  L++ F    EG++S    +LV   T 
Sbjct: 3   QALTHRSASSKHNE---RLEFLGDSILSFVIANALYHRFPRVDEGDMSRMRATLVRGNTL 59

Query: 85  SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
           +++ARE DL   +R+     K       SI AD VE+LI  ++LD  I+     +  +++
Sbjct: 60  AEMAREFDLGECLRLGPGELKSGGFRRESILADTVEALIGGVFLDSDIQTVERLILDWYR 119

Query: 145 QR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA-PA 201
            R   +  G  ++D KT LQE+   +    P Y V    G  HD  FT+  ++SGL+ P 
Sbjct: 120 SRLDEISPGDKQKDPKTRLQEFLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLSEPV 179

Query: 202 QGMDCSKRAAEQVAAAEVLKR 222
            G   S+R AEQ AA + LK+
Sbjct: 180 VGTGSSRRKAEQAAAEQALKK 200


>gi|238021755|ref|ZP_04602181.1| hypothetical protein GCWU000324_01658 [Kingella oralis ATCC 51147]
 gi|237866369|gb|EEP67411.1| hypothetical protein GCWU000324_01658 [Kingella oralis ATCC 51147]
          Length = 239

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/217 (33%), Positives = 116/217 (53%), Gaps = 10/217 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L+K++GY F N +LL++ALTH S    + ++ ERLEF+GD IL   I+ +L++ F    E
Sbjct: 14  LQKQLGYTFKNPALLQQALTHRSY---HAQNNERLEFIGDSILDYAIAKMLYHAFPKLPE 70

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G LS     LV   T +++AREL + + + + +   K   +   SI AD VE+L+AA+  
Sbjct: 71  GRLSPLRAQLVKEATLAEIARELHIGNALYLGTGELKSGGNDRPSILADAVEALLAAISF 130

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D     A   V + +  R   L +    +D KT+LQE   A+    P+Y++  ++G  + 
Sbjct: 131 DADFATAEATVQRLFAPRIQQLNTHTQAKDPKTQLQEMLQAQHLPLPKYRIEKQTGEGNT 190

Query: 187 PRFTVVVEISGLAP---AQGMDCSKRAAEQVAAAEVL 220
             F V  ++  L     AQ    S+RAAEQ  A + +
Sbjct: 191 ALFDVSCDLGQLGKITYAQAH--SRRAAEQDCAQQAI 225


>gi|46908036|ref|YP_014425.1| ribonuclease III [Listeria monocytogenes serotype 4b str. F2365]
 gi|47093844|ref|ZP_00231588.1| ribonuclease III [Listeria monocytogenes str. 4b H7858]
 gi|226224408|ref|YP_002758515.1| ribonuclease III [Listeria monocytogenes Clip81459]
 gi|254826153|ref|ZP_05231154.1| ribonuclease III [Listeria monocytogenes FSL J1-194]
 gi|254852713|ref|ZP_05242061.1| ribonuclease III [Listeria monocytogenes FSL R2-503]
 gi|254933277|ref|ZP_05266636.1| ribonuclease III [Listeria monocytogenes HPB2262]
 gi|300763882|ref|ZP_07073879.1| ribonuclease III [Listeria monocytogenes FSL N1-017]
 gi|73917580|sp|Q71YL2|RNC_LISMF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|259491903|sp|C1KWA4|RNC_LISMC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|46881306|gb|AAT04602.1| ribonuclease III [Listeria monocytogenes serotype 4b str. F2365]
 gi|47017785|gb|EAL08574.1| ribonuclease III [Listeria monocytogenes str. 4b H7858]
 gi|225876870|emb|CAS05579.1| Putative ribonuclease III [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
 gi|258606034|gb|EEW18642.1| ribonuclease III [Listeria monocytogenes FSL R2-503]
 gi|293584837|gb|EFF96869.1| ribonuclease III [Listeria monocytogenes HPB2262]
 gi|293595393|gb|EFG03154.1| ribonuclease III [Listeria monocytogenes FSL J1-194]
 gi|300515618|gb|EFK42668.1| ribonuclease III [Listeria monocytogenes FSL N1-017]
 gi|328473534|gb|EGF44371.1| ribonuclease III [Listeria monocytogenes 220]
 gi|332312246|gb|EGJ25341.1| Ribonuclease 3 [Listeria monocytogenes str. Scott A]
          Length = 229

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 115/218 (52%), Gaps = 7/218 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++  L++ +G+ F +  LL++A THSS  + ++    +  ERLEFLGD +L L +S  LF
Sbjct: 3   QWEELQESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSNYLF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N +    EG ++    ++V   +  + A  +  + ++R+     K       ++ ADV E
Sbjct: 63  NKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178
           S I ALYLD GI+   TF+++    + + +G + +  D KT+LQE       V  EY + 
Sbjct: 123 SFIGALYLDNGIDKVVTFLERVIFPK-IDAGAYLQTVDYKTQLQEIVQRDRDVLIEYDIL 181

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             +GP H+  F   V ++G    +G   +K+ AEQ AA
Sbjct: 182 GETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAA 219


>gi|238896018|ref|YP_002920754.1| ribonuclease III [Klebsiella pneumoniae NTUH-K2044]
 gi|238548336|dbj|BAH64687.1| ribonuclease III [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 204

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/203 (35%), Positives = 109/203 (53%), Gaps = 6/203 (2%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           +++ALTH S S  + E   RLEFLGD IL  +I+  L++ F    EG++S    +LV   
Sbjct: 1   MQQALTHRSASSKHNE---RLEFLGDSILSFVIANALYHRFPRVDEGDMSRMRATLVRGN 57

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
           T +++ARE +L   +R+     K       SI AD VE+LI  ++LD  I+     +  +
Sbjct: 58  TLAEIAREFELGECLRLGPGELKSGGFRRESILADTVEALIGGVFLDSDIQNVERLILSW 117

Query: 143 WKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA- 199
           ++ R   +  G  ++D KT LQE+   +    P Y V    G  HD  FT+  ++SGL+ 
Sbjct: 118 YQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLSE 177

Query: 200 PAQGMDCSKRAAEQVAAAEVLKR 222
           P  G   S+R AEQ AA + LK+
Sbjct: 178 PVVGTGSSRRKAEQAAAEQALKK 200


>gi|50954668|ref|YP_061956.1| ribonuclease III [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|81391047|sp|Q6AFJ4|RNC_LEIXX RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|50951150|gb|AAT88851.1| ribonuclease III [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 237

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/199 (37%), Positives = 99/199 (49%), Gaps = 5/199 (2%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LLE ALTH S ++      + ERLEFLGD ILG  ++  LF       EGEL+ R  SLV
Sbjct: 23  LLELALTHRSYAYENGGIPNNERLEFLGDSILGQAVTVKLFRENPGLDEGELAKRRASLV 82

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
           S+   ++VAR + L  ++ +     +       SI AD VE++I A+YLD G + A   V
Sbjct: 83  SSVALAEVARGIGLGEYLLLGRGENQSGGREKASILADTVEAVIGAVYLDAGGDEATALV 142

Query: 140 DKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197
            +          +F    D KT LQE A       P Y V   +GPDH   F   V++ G
Sbjct: 143 LRLIGPLLADPDRFGAAMDPKTSLQEAAAHHGAGQPVYTV-INTGPDHSKTFHATVDVGG 201

Query: 198 LAPAQGMDCSKRAAEQVAA 216
           L  A G   SK+ AE  AA
Sbjct: 202 LVTASGEGTSKKQAEMAAA 220


>gi|167765553|ref|ZP_02437617.1| hypothetical protein CLOSS21_00047 [Clostridium sp. SS2/1]
 gi|317498509|ref|ZP_07956803.1| ribonuclease III [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167712738|gb|EDS23317.1| hypothetical protein CLOSS21_00047 [Clostridium sp. SS2/1]
 gi|291559019|emb|CBL37819.1| RNAse III [butyrate-producing bacterium SSC/2]
 gi|316894202|gb|EFV16390.1| ribonuclease III [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 228

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/226 (34%), Positives = 111/226 (49%), Gaps = 5/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLIS 56
           M A      +++IG  F   S L  A  HSS ++    S  ++ ERLEFLGD +L L+ S
Sbjct: 1   MDAKSVEEFQEQIGIKFHEPSRLWNAFIHSSYANERRMSKDKNNERLEFLGDAVLELVTS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS    SLV   T +  AR+++L  ++ +S            SI +
Sbjct: 61  NYLYRTYQKESEGKLSKIRASLVCEPTLAGCARDINLGKYVLLSKGEDMTGGRSRDSILS 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D  E++I A+YLD GIE A  F++ Y  +       F  DAKT LQE    +     +Y 
Sbjct: 121 DAFEAVIGAIYLDQGIETATKFIETYLFKDVENKVLF-FDAKTNLQEIVQGEGKGRLKYV 179

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +    GPDH   FTV   +       G   SK++AEQ AA E +KR
Sbjct: 180 LVGEEGPDHAKIFTVEARLGENVIGTGSGHSKKSAEQHAAFEAIKR 225


>gi|30250251|ref|NP_842321.1| rnc; ribonuclease III (RNAse III) protein [Nitrosomonas europaea
           ATCC 19718]
 gi|81436192|sp|Q820I0|RNC_NITEU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|30181046|emb|CAD86236.1| rnc; ribonuclease III (RNAse III) protein [Nitrosomonas europaea
           ATCC 19718]
          Length = 245

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/214 (33%), Positives = 105/214 (49%), Gaps = 6/214 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y+   +++GY F    LL +ALTH S+      + ER EFLGD +L   +STLLF  F S
Sbjct: 24  YAVFLQKLGYTFKQPDLLREALTHRSLGFP---NNERFEFLGDSVLNCAVSTLLFKRFPS 80

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+L+    + V+ +   ++A  L +   I +    RK       SI A+ VE++I A
Sbjct: 81  LPEGDLTRLRANFVNQQALHRLASALGIGELILLGEGERKSGGHHRPSILANAVEAIIGA 140

Query: 126 LYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YL+ G  V    +   ++   R L      +D+KT LQE+  ++    PEY V    G 
Sbjct: 141 IYLESGFAVVEQVIVALYEPLIRQLDPDTSGKDSKTLLQEYLQSRKIALPEYSVLLAQGD 200

Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAA 216
            H   F V   I G     +G   S+R AEQ AA
Sbjct: 201 PHAQVFHVECVIPGFGIRTRGEGTSRRRAEQEAA 234


>gi|16800985|ref|NP_471253.1| ribonuclease III [Listeria innocua Clip11262]
 gi|22654065|sp|Q92AK3|RNC_LISIN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|16414420|emb|CAC97149.1| rncS [Listeria innocua Clip11262]
 gi|313618316|gb|EFR90363.1| ribonuclease III [Listeria innocua FSL S4-378]
          Length = 229

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 114/218 (52%), Gaps = 7/218 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++  L++ +G+ F N  LL++A THSS  + ++    +  ERLEFLGD +L L +S  LF
Sbjct: 3   QWEELQESVGFDFQNVELLQQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N +    EG ++    ++V   +  + A  +  + ++R+     K       ++ ADV E
Sbjct: 63  NKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178
           S I ALYLD GI+    F+++    + + +G + +  D KT+LQE       V  EY + 
Sbjct: 123 SFIGALYLDNGIDKVVKFLERVIFPK-IDAGAYLQTVDYKTQLQEIVQRDRDVLIEYDIL 181

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             +GP H+  F   V ++G    +G   +K+ AEQ AA
Sbjct: 182 GETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAA 219


>gi|168333987|ref|ZP_02692211.1| Ribonuclease III [Epulopiscium sp. 'N.t. morphotype B']
          Length = 239

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 112/219 (51%), Gaps = 6/219 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHF 63
           + EK+I Y F    LL+ ALTHSS ++ ++E      ERLEFLGD IL L++S  LF  +
Sbjct: 13  SFEKKIEYTFKRIELLDLALTHSSYANEHREQGVKDNERLEFLGDAILDLIVSEYLFKKY 72

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             ++EG+LS    S+V   + ++  + L+L  +I +             SI AD  E++ 
Sbjct: 73  PESQEGDLSKFRASIVCEASLAKAGKRLELGKYILLGHGEEMGGGRDRESIIADAFEAVT 132

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+ +D   E   T++ K   +  +   + K  +D KT LQ  +         Y+V    
Sbjct: 133 GAMLIDSSYEDVKTYLAKTLIEFIKHTSATKLYKDYKTILQIESQKNVNTVIAYEVVEEK 192

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           GPDH+  F V ++ +G    +G   +KR AEQVAA + L
Sbjct: 193 GPDHEKEFVVELKQNGKVIGKGSGRTKRDAEQVAAHQAL 231


>gi|292670166|ref|ZP_06603592.1| ribonuclease III [Selenomonas noxia ATCC 43541]
 gi|292648118|gb|EFF66090.1| ribonuclease III [Selenomonas noxia ATCC 43541]
          Length = 238

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/206 (34%), Positives = 110/206 (53%), Gaps = 5/206 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESY---ERLEFLGDRILGLLISTLLFNHFDS 65
           L   +G +F + +LL++ALTH S ++  +++    ERLEFLGD +L L  ST L+  F  
Sbjct: 16  LSAEMGVSFNDFALLDEALTHPSYTNEAKDTIPHNERLEFLGDAVLELASSTYLYARFPD 75

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGEL+    SLV + T +++AR LDL S +R+      +  +   +   +  E++I A
Sbjct: 76  CSEGELTKMRASLVQSNTLARLARALDLGSCLRLGRGEFHNGGADRQNNLENAFEAVIGA 135

Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YLD G E A  +V +   + A  +K  +   D KT LQE    +      Y++   SGP
Sbjct: 136 VYLDAGWETAKEYVARQLSREADHIKKAQVVHDYKTTLQEHIQQRRNKGIVYELIDESGP 195

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKR 209
           DHD RFT+ V +      +G   SK+
Sbjct: 196 DHDKRFTMRVLVDNQPIGEGAGRSKK 221


>gi|269926036|ref|YP_003322659.1| ribonuclease III [Thermobaculum terrenum ATCC BAA-798]
 gi|269789696|gb|ACZ41837.1| ribonuclease III [Thermobaculum terrenum ATCC BAA-798]
          Length = 234

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/220 (35%), Positives = 115/220 (52%), Gaps = 8/220 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLFNH 62
           + TL++R+GY F N  LL+ ALTH S ++      E+ ER EFLGD IL  ++   LF  
Sbjct: 7   FITLQERLGYKFRNIELLKTALTHRSFANESLEKTETNERFEFLGDSILAFVVGEALFRL 66

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F  A EG L+     LV  +  + ++R L +  FI +    R    S   S+ AD +E+L
Sbjct: 67  FPRASEGILTRARAHLVGRKNLADISRTLGIGDFILLGKGARLSGSSQSESVLADALEAL 126

Query: 123 IAALYLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           IAA+YLD  +E   + V +  +  +  ++     +D KT LQE +H  +   P Y V   
Sbjct: 127 IAAVYLDSDLETCRSVVFRLLRLSKEEIEHWLDVKDNKTRLQELSHRLYRTNPIYTVI-- 184

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           + P     F V V+++ ++ AQG   SK  AEQ AA + L
Sbjct: 185 AAPPVRDNFIVQVKVNDVS-AQGEGRSKSEAEQEAARKAL 223


>gi|205373341|ref|ZP_03226145.1| ribonuclease III [Bacillus coahuilensis m4-4]
          Length = 249

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 115/222 (51%), Gaps = 7/222 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +   +++IG +F+N S+L++A THSS  + ++    E  ERLEFLGD +L L +S  L+N
Sbjct: 19  FKDFQEKIGISFSNVSILKQAFTHSSYVNEHRKKPFEDNERLEFLGDAVLELTVSHFLYN 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A ELD  S + +             ++ ADV E+
Sbjct: 79  KYATMSEGELTKLRAAIVCEPSLVKFANELDFGSVVLLGKGEELTGGRTRPALLADVFEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179
            I ALYLD G++    F+++    + +  G F    D K++LQE    +     EY++  
Sbjct: 139 FIGALYLDQGLQSVEKFLEQIVFPK-INDGAFSHVMDYKSQLQELIQREGSGQLEYRILL 197

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             GP H   F   V ++ +    G   SK+ AEQ AA + L+
Sbjct: 198 EKGPAHSKEFVSQVLLNSMEIGVGNGRSKKEAEQHAAQKALE 239


>gi|323342032|ref|ZP_08082265.1| ribonuclease III [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464457|gb|EFY09650.1| ribonuclease III [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 226

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/211 (33%), Positives = 108/211 (51%), Gaps = 6/211 (2%)

Query: 17  FANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           + N+ L+  A  HSS  +  +E     ERLEF+GD +L + +S  LF H D   EG++++
Sbjct: 14  YFNKDLINNAFIHSSYVNEAEELLEDNERLEFMGDAVLQICVSERLFKHQDHFNEGDMTL 73

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
               LV  +  +Q + +L L  ++ +     K+      SI AD+ ES I ALYLD GI+
Sbjct: 74  YRAKLVCEDALAQYSLKLKLNDYLMLGMGEEKNGGRVRVSIIADLFESFIGALYLDSGID 133

Query: 134 VAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
                +D         L+S     D KT+LQE+  +    +  Y+V    GP + P F V
Sbjct: 134 SVNRVLDSVMNDAFNELESLSI-TDYKTKLQEYIQSDSRKSVSYEVINVVGPSNAPEFEV 192

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           VV++  L   QG   SK+ AEQ+AA +  ++
Sbjct: 193 VVKLDELIFGQGKGLSKKKAEQMAAKDAFEK 223


>gi|260890105|ref|ZP_05901368.1| hypothetical protein GCWU000323_01267 [Leptotrichia hofstadii
           F0254]
 gi|260860128|gb|EEX74628.1| ribonuclease III [Leptotrichia hofstadii F0254]
          Length = 243

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 111/218 (50%), Gaps = 6/218 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           L ++IGY F N   LE+ALTH S S+  ++    + E+LEFLGD +L L+ +  ++  ++
Sbjct: 12  LMQKIGYEFKNEEYLEEALTHRSYSNETEKDRRFNNEKLEFLGDAVLNLITTEYIYELYE 71

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGEL+   + ++S    S +A +++L  ++ +S+           SI  D  E+LI 
Sbjct: 72  KKTEGELAKLKSQIISEPVFSTIASDIELGEYLYLSNGEIMSGGRNRRSILGDAFEALIG 131

Query: 125 ALYLDGGIEVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A++ D     A     K    K   L+  +   D KT LQE+   K+   PEYK+    G
Sbjct: 132 AIFKDSDYYTAKNVALKLLLGKINKLEEIEGTGDYKTVLQEFVQGKYRKMPEYKLLNTKG 191

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           PDHD  F + V  +      G+  SK+ AE+ AA E L
Sbjct: 192 PDHDKVFEISVSWNDKIYGVGIGKSKKEAEKHAAKEAL 229


>gi|238916990|ref|YP_002930507.1| ribonuclease III [Eubacterium eligens ATCC 27750]
 gi|238872350|gb|ACR72060.1| ribonuclease III [Eubacterium eligens ATCC 27750]
          Length = 237

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 113/224 (50%), Gaps = 6/224 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY----ERLEFLGDRILGLLIS 56
           M     S   + IGY F + SLLE ALTHSS ++  ++      ER+EFLGD +L L  S
Sbjct: 1   MHNKNLSVFMQTIGYDFKDISLLEVALTHSSYANEQKKGNCCDNERMEFLGDAVLELSSS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             ++ +     EG+++    S+V   T +  AR + L +FIR+             SI +
Sbjct: 61  DYIYKNHAEMAEGKMTRLRASIVCEPTLALCARAIKLDTFIRLGKGEELTGGRSRDSIVS 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D  E++I A+YLDGG   A  FV+K+     L + K   D+KT LQE      G   +Y+
Sbjct: 121 DACEAVIGAIYLDGGFANAKEFVNKFI-LNDLDNKKLFFDSKTILQEVIQG-LGKEVDYE 178

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                GP+H+ +F V   + GL   +G   +K++A Q AA   L
Sbjct: 179 FIGEEGPEHNKQFVVAAVVDGLFNIKGTGHTKKSASQNAAYAAL 222


>gi|88703551|ref|ZP_01101267.1| ribonuclease III [Congregibacter litoralis KT71]
 gi|88702265|gb|EAQ99368.1| ribonuclease III [Congregibacter litoralis KT71]
          Length = 224

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/199 (36%), Positives = 104/199 (52%), Gaps = 6/199 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE++ G    N +LL +AL+H S+      + ERLEFLGD +LG ++S  L+  F  A E
Sbjct: 7   LERQFGCRLNNDALLHQALSHRSVG---SRNNERLEFLGDSVLGYVVSEELYRRFPDADE 63

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    SLV     ++VARE+ L   +R+    R        SI AD  E+++ A+ L
Sbjct: 64  GQLSRLRVSLVKGSALAEVAREITLGEQLRLGVGERHGGGRRRNSILADSFEAILGAIVL 123

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D GIE     + K +  R   LK  + R+D KT LQE         PEY +   +G DH 
Sbjct: 124 DLGIEACRAAILKVFHARFEGLKLEQARKDPKTRLQELLQGSGRPLPEYVLRKATGEDHA 183

Query: 187 PRFTVVVEIS-GLAPAQGM 204
             FTV  E++ G   A+G+
Sbjct: 184 RIFTVACELADGREVAEGI 202


>gi|322387562|ref|ZP_08061171.1| ribonuclease III [Streptococcus infantis ATCC 700779]
 gi|321141429|gb|EFX36925.1| ribonuclease III [Streptococcus infantis ATCC 700779]
          Length = 232

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/216 (33%), Positives = 108/216 (50%), Gaps = 7/216 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62
           + LE+R G  F+++ LLE A TH+S ++ ++       ERLEFLGD +L LLIS  L+  
Sbjct: 6   TVLEQRFGLVFSDKQLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLYKK 65

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +    EG+LS     +V  E+ +  AR+     FI++     K       +I  D  E+ 
Sbjct: 66  YPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILGDAFEAF 125

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFR 180
           + AL LD  +     F+ +    + +++G F   +D KT LQE       V   Y+V   
Sbjct: 126 LGALLLDKDLLTVKEFIYQVMIPK-VEAGDFEMIKDYKTHLQELLQVNGDVDIRYQVISE 184

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            GP HD  F V V + G +  +G   SK+ AEQ AA
Sbjct: 185 IGPAHDKMFEVEVLVEGQSLGRGQGRSKKLAEQEAA 220


>gi|229541120|ref|ZP_04430180.1| ribonuclease III [Bacillus coagulans 36D1]
 gi|229325540|gb|EEN91215.1| ribonuclease III [Bacillus coagulans 36D1]
          Length = 246

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 111/222 (50%), Gaps = 7/222 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLF 60
           ++  L++++G  F + +LL++A THSS  + + E      ERLEFLGD +L L +S  LF
Sbjct: 15  KFGKLQEQLGIHFQDVNLLKQAFTHSSYVNEHPEKRRHDNERLEFLGDAVLELTVSHYLF 74

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N F S  EGE++    S+V   +    A EL    +I +             ++ ADV E
Sbjct: 75  NRFPSMNEGEMTKLRASVVCEPSLVIFANELHFGEYILLGKGEEMTGGRTRPALLADVFE 134

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178
           + I ALYLD G++   + ++K    + +  G F    D K++LQE+   +     EY + 
Sbjct: 135 AFIGALYLDKGLKAVVSLLEKVVFPK-IDEGLFSSTADYKSKLQEYVQKRTSGVLEYTIL 193

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
              GP HD  F   V ++  A   G   SK+ AEQ AA   L
Sbjct: 194 DERGPAHDKEFVSSVSLNNKALGTGKGRSKKEAEQQAAQTAL 235


>gi|315282805|ref|ZP_07871128.1| ribonuclease III [Listeria marthii FSL S4-120]
 gi|313613534|gb|EFR87355.1| ribonuclease III [Listeria marthii FSL S4-120]
          Length = 229

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 115/218 (52%), Gaps = 7/218 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++  L++ +G+ F +  LL++A THSS  + ++    +  ERLEFLGD +L L +S  LF
Sbjct: 3   QWEELQESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N +    EG ++    ++V   +  + A  +  + ++R+     K       ++ ADV E
Sbjct: 63  NKYPEMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178
           S I ALYLD GI+   TF+++    + + +G + +  D KT+LQE       V  EY + 
Sbjct: 123 SFIGALYLDNGIDKVVTFLERVIFPK-IDAGAYLQTVDYKTQLQEIVQRDRDVLIEYDIL 181

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             +GP H+  F   V ++G    +G   +K+ AEQ AA
Sbjct: 182 GETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAA 219


>gi|47097388|ref|ZP_00234939.1| ribonuclease III [Listeria monocytogenes str. 1/2a F6854]
 gi|217964043|ref|YP_002349721.1| ribonuclease III [Listeria monocytogenes HCC23]
 gi|254829200|ref|ZP_05233887.1| ribonuclease III [Listeria monocytogenes FSL N3-165]
 gi|254899498|ref|ZP_05259422.1| ribonuclease III [Listeria monocytogenes J0161]
 gi|254912363|ref|ZP_05262375.1| ribonuclease III [Listeria monocytogenes J2818]
 gi|254936690|ref|ZP_05268387.1| ribonuclease III [Listeria monocytogenes F6900]
 gi|290893065|ref|ZP_06556054.1| ribonuclease III [Listeria monocytogenes FSL J2-071]
 gi|254807893|sp|B8DDU8|RNC_LISMH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|47014236|gb|EAL05218.1| ribonuclease III [Listeria monocytogenes str. 1/2a F6854]
 gi|217333313|gb|ACK39107.1| ribonuclease III [Listeria monocytogenes HCC23]
 gi|258601611|gb|EEW14936.1| ribonuclease III [Listeria monocytogenes FSL N3-165]
 gi|258609286|gb|EEW21894.1| ribonuclease III [Listeria monocytogenes F6900]
 gi|290557425|gb|EFD90950.1| ribonuclease III [Listeria monocytogenes FSL J2-071]
 gi|293590344|gb|EFF98678.1| ribonuclease III [Listeria monocytogenes J2818]
 gi|307571387|emb|CAR84566.1| ribonuclease III [Listeria monocytogenes L99]
 gi|313608181|gb|EFR84216.1| ribonuclease III [Listeria monocytogenes FSL F2-208]
          Length = 229

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 115/218 (52%), Gaps = 7/218 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++  L++ +G+ F +  LL++A THSS  + ++    +  ERLEFLGD +L L +S  LF
Sbjct: 3   QWEELQESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N +    EG ++    ++V   +  + A  +  + ++R+     K       ++ ADV E
Sbjct: 63  NKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178
           S I ALYLD GI+   TF+++    + + +G + +  D KT+LQE       V  EY + 
Sbjct: 123 SFIGALYLDNGIDKVVTFLERVIFPK-IDAGAYLQTVDYKTQLQEIVQRDRDVLIEYDIL 181

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             +GP H+  F   V ++G    +G   +K+ AEQ AA
Sbjct: 182 GETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAA 219


>gi|145588593|ref|YP_001155190.1| ribonuclease III [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145046999|gb|ABP33626.1| RNAse III [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 263

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/219 (35%), Positives = 116/219 (52%), Gaps = 8/219 (3%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           + +  +TL++R+GY F    LL +ALTH S  HS +++ ERLEFLGD IL  +++ LL+ 
Sbjct: 5   AVIETATLQERLGYVFKKTELLNQALTHRS--HS-KKNNERLEFLGDSILNCVVADLLYE 61

Query: 62  HFDSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            +    EG+LS VR N LV  +   ++A+ L L+  +R+     K       SI AD +E
Sbjct: 62  RYSDLDEGDLSRVRAN-LVKQQALYEIAQTLLLSDHLRLGEGELKSGGFRRPSILADTLE 120

Query: 121 SLIAALYLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++  A++LDGG + A   + K +      +      +D KT LQE         P Y VT
Sbjct: 121 AVTGAIFLDGGFDAAKDCLRKLYSVILAQVDPKTLGKDDKTLLQECLQGYQLPLPTYNVT 180

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAA 216
             +G  H+ +F V   I  L    +G   S+RAAEQ AA
Sbjct: 181 GTTGAAHNQQFEVECLIPSLKVSVKGDGASRRAAEQSAA 219


>gi|154686009|ref|YP_001421170.1| ribonuclease III [Bacillus amyloliquefaciens FZB42]
 gi|189043290|sp|A7Z4L3|RNC_BACA2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|154351860|gb|ABS73939.1| Rnc [Bacillus amyloliquefaciens FZB42]
          Length = 249

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 110/224 (49%), Gaps = 7/224 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++   ++RI   F N  LL +A THSS  + ++    E  ERLEFLGD +L L IS  LF
Sbjct: 19  QFKEFQERISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLF 78

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             + +  EG+L+    ++V   +   +A EL     + +             ++ ADV E
Sbjct: 79  AKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFE 138

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178
           + I ALYLD G++    F+  Y   + +  G F    D K++LQE+       + EYK+ 
Sbjct: 139 AFIGALYLDQGLDPVQQFLKVYVFPK-INDGAFSHVMDFKSQLQEFVQRDGKGSLEYKIL 197

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              GP H+  F  +V + G A   G   SK+ AEQ AA E L +
Sbjct: 198 NEKGPAHNREFEALVSLKGEALGIGNGRSKKEAEQHAAQEALAK 241


>gi|188585989|ref|YP_001917534.1| Ribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|229564354|sp|B2A2N1|RNC_NATTJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|179350676|gb|ACB84946.1| Ribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 230

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/212 (33%), Positives = 110/212 (51%), Gaps = 5/212 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDS 65
           L++++G  + +  LL +A+TH+S +H  ++     ERLEFLGD +L L IS  L+  +  
Sbjct: 11  LKEKLG-IYVDDKLLLQAVTHTSYAHEQKDVVDHNERLEFLGDAVLELAISETLYKKYPE 69

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGEL+     LV   +  ++A +LDL  ++R+             S  AD VE+LI A
Sbjct: 70  LPEGELTKLRAELVCELSLVKIAEKLDLGKYLRLGKGEDSTGGRDRRSTLADTVEALIGA 129

Query: 126 LYLDGGIEVAGTFV-DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           +YL    +     + D +  Q +    +   D KT +QE    ++G  P+Y++   SGPD
Sbjct: 130 VYLQTNYDQTKQLILDLFKDQLSHIDNQRIGDYKTMIQELVQDRYGDPPKYQIVKESGPD 189

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           HD  F   V+I+     +G   SK+ AEQ AA
Sbjct: 190 HDKSFVAEVQINNEVVGRGSGKSKKEAEQNAA 221


>gi|262037510|ref|ZP_06010969.1| ribonuclease III [Leptotrichia goodfellowii F0264]
 gi|261748440|gb|EEY35820.1| ribonuclease III [Leptotrichia goodfellowii F0264]
          Length = 238

 Score =  106 bits (264), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 113/218 (51%), Gaps = 6/218 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFD 64
           L ++I Y F N S L++ALTH S S+ +++S     E+LEFLGD +L L+ +  ++N   
Sbjct: 9   LMEKIDYKFRNESYLKEALTHRSFSNEHEKSKNFDNEKLEFLGDAVLNLITTEYIYNSGK 68

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGEL+   + ++S    S +A E+ L  ++ +S+           SI  D  E+LI 
Sbjct: 69  GKNEGELAKLKSQIISEPVFSAIAAEIGLGDYLYLSNGEESSGGRKRKSILGDAFEALIG 128

Query: 125 ALYLDGGIEVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A++LD     A     K+   K   L+  +   D KT LQE   +K+   PEY++    G
Sbjct: 129 AVFLDSDYYTAKNTALKFLPDKINNLEDIEGIIDYKTVLQEVFQSKYKKMPEYEILDTKG 188

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           PDH+  F + V+++      G   SK+ AE+ AA E +
Sbjct: 189 PDHNKVFEISVKLNNKIIGIGRGKSKKEAEKRAAKEAI 226


>gi|297559194|ref|YP_003678168.1| ribonuclease III [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296843642|gb|ADH65662.1| ribonuclease III [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 248

 Score =  106 bits (264), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/201 (37%), Positives = 110/201 (54%), Gaps = 9/201 (4%)

Query: 22  LLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
           +L +ALTH S  ++Y++    + ERLEFLGD +LGL+++  LF       EG+L+    +
Sbjct: 25  ILLRALTHRS--YAYEKGGLPTNERLEFLGDSVLGLVVTDTLFRKHPDLPEGQLAKLRAA 82

Query: 78  LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137
           +V+    + VAR L + ++IR+            +SI AD +E++I A+YLD G++VA  
Sbjct: 83  VVNMRALADVARGLGVGAYIRLGRGEEGTGGRDKSSILADTLEAVIGAVYLDRGLDVASE 142

Query: 138 FVDKYWKQR-ALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
           FV + +    A  SG     D KT LQE   A+    PEY V   SGPDH   F   V +
Sbjct: 143 FVHRLFDPLIATASGLGAGLDWKTSLQELTAAEMLGVPEYHVD-ESGPDHQKTFRATVRV 201

Query: 196 SGLAPAQGMDCSKRAAEQVAA 216
           +G +   G   SK+ AEQ AA
Sbjct: 202 AGESYGLGEGRSKKEAEQQAA 222


>gi|104783263|ref|YP_609761.1| ribonuclease III [Pseudomonas entomophila L48]
 gi|122402118|sp|Q1I5V8|RNC_PSEE4 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|95112250|emb|CAK16977.1| ribonuclease III, ds RNA [Pseudomonas entomophila L48]
          Length = 229

 Score =  106 bits (264), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/223 (35%), Positives = 115/223 (51%), Gaps = 12/223 (5%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE+++GY F N+  +  ALTH S +     + ERLEFLGD IL  ++   LF  F  A+E
Sbjct: 8   LERKLGYTFKNQDQMLLALTHRSYAG---RNNERLEFLGDAILNFVVGEALFERFPQARE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS     LV  ET +++AR  DL  ++R+ S   K       SI AD +E+LI A+Y 
Sbjct: 65  GQLSRLRARLVKGETLARLARGFDLGDYLRLGSGELKSGGFRRESILADALEALIGAIYQ 124

Query: 129 DGGIEVA-----GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           D  ++ A         D++     + + K   D KT LQE+  ++    P Y+V    G 
Sbjct: 125 DADMQTARERILAWLTDEFDGLTLVDTNK---DPKTRLQEFLQSRACELPRYEVVDIQGE 181

Query: 184 DHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225
            H   F V  E+  L   ++G   S+R AEQVAAA  L   G+
Sbjct: 182 PHCRTFFVECEVVLLNKKSRGQGVSRRIAEQVAAAAALIALGV 224


>gi|17545782|ref|NP_519184.1| ribonuclease III [Ralstonia solanacearum GMI1000]
 gi|22654059|sp|Q8Y0I1|RNC_RALSO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|17428076|emb|CAD14765.1| probable ribonuclease III (rnase III) protein [Ralstonia
           solanacearum GMI1000]
          Length = 256

 Score =  106 bits (264), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/211 (34%), Positives = 108/211 (51%), Gaps = 6/211 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L++R+GY F+   LL++ALTH S +  + E   RLEFLGD IL   ++ +L+  F    E
Sbjct: 6   LQQRLGYRFSKPELLQQALTHRSHNAMHNE---RLEFLGDSILNCAVADMLYGMFGKLDE 62

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    +LV  +   ++A+ L L   +R+     K       SI AD +E++  A++L
Sbjct: 63  GDLSRVRANLVKQQALYEIAQMLLLPDELRLGEGELKSGGFRRPSILADALEAIFGAVFL 122

Query: 129 DGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           DGG + A T + K +      +      +DAKT LQE+        P+Y V    G  H+
Sbjct: 123 DGGFDAARTLIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYAVVATHGAAHN 182

Query: 187 PRFTVVVEISGLA-PAQGMDCSKRAAEQVAA 216
            +F V   I  L     G   S+RAAEQ AA
Sbjct: 183 QQFEVECTIPKLEIRVSGSGASRRAAEQSAA 213


>gi|51245097|ref|YP_064981.1| ribonuclease III [Desulfotalea psychrophila LSv54]
 gi|81642476|sp|Q6ANV0|RNC_DESPS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|50876134|emb|CAG35974.1| related to ribonuclease III [Desulfotalea psychrophila LSv54]
          Length = 241

 Score =  106 bits (264), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 114/225 (50%), Gaps = 9/225 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFN 61
           +++  EK+I Y F +  LL+KAL HSS +    +   + ERLEF+GD +L L++   L+ 
Sbjct: 15  KHAEFEKKINYKFIDLRLLQKALIHSSYAFEQAQAGKNNERLEFVGDAVLDLVVGNALYR 74

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F   +EGEL+    +LV+    + +AR+++L  F+ +            +SI +   E+
Sbjct: 75  RFPEMREGELTRLRAALVNEGHLATMARKINLGYFLCLGKGEDNSKGREKSSILSCAYEA 134

Query: 122 LIAALYLDGGIEVAGTFVDKYW----KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           +I A++ DGG +     V++++     +R  K      DAK+ LQE    K    P Y++
Sbjct: 135 VIGAIFQDGGYDAVAALVERFFLPVIDRR--KEDLLLADAKSRLQEILQEKHNEGPSYRL 192

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
               GP H  RFT+ V         G   SK+ AEQ  AA  +K+
Sbjct: 193 DNEEGPSHKKRFTISVLFRDEVLGTGEAGSKKEAEQRGAALAIKK 237


>gi|170720259|ref|YP_001747947.1| ribonuclease III [Pseudomonas putida W619]
 gi|229564376|sp|B1J4E0|RNC_PSEPW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|169758262|gb|ACA71578.1| Ribonuclease III [Pseudomonas putida W619]
          Length = 229

 Score =  106 bits (264), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/223 (36%), Positives = 116/223 (52%), Gaps = 12/223 (5%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE+++GY F ++  +  ALTH S +     + ERLEFLGD IL  +    LF  F  A+E
Sbjct: 8   LERKLGYTFKDQDQMVLALTHRSYAG---RNNERLEFLGDAILNFVAGEALFERFPQARE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS     LV  ET +++AR  DL  ++R+ S   K       SI AD +E+LI A+YL
Sbjct: 65  GQLSRLRARLVKGETLARLARGFDLGEYLRLGSGELKSGGFRRESILADALEALIGAIYL 124

Query: 129 DGGIEVAGTFV-----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           D  ++ A   V     D++     + + K   D KT LQE+  ++    P Y+V    G 
Sbjct: 125 DADMQTARERVLAWLTDEFESLTLVDTNK---DPKTRLQEFLQSRSCELPRYEVVDIQGE 181

Query: 184 DHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225
            H   F V  E+  L   ++G   S+R AEQVAAA  L   G+
Sbjct: 182 PHCRTFFVECEVVLLNNKSRGQGVSRRIAEQVAAAAALIALGV 224


>gi|226322326|ref|ZP_03797844.1| hypothetical protein COPCOM_00087 [Coprococcus comes ATCC 27758]
 gi|225209248|gb|EEG91602.1| hypothetical protein COPCOM_00087 [Coprococcus comes ATCC 27758]
          Length = 252

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/205 (35%), Positives = 105/205 (51%), Gaps = 5/205 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
           LE++IGY F +  LL  A+THSS  +       +  ERLEFLGD +L L+ S  LF    
Sbjct: 29  LEEKIGYNFKDSHLLRHAVTHSSYVNEKHMKKADCNERLEFLGDAVLELISSEYLFFENQ 88

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EGEL+    S+V  +  +  AR+L+L S++ +          F  SI +D +E+LI 
Sbjct: 89  TMPEGELTKLRASMVCEKALAFCARDLELGSYLLLGKGEDATGGRFRESITSDALEALIG 148

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A+YLDGG   A  F+ KY     L+  +   D+KT LQE           Y++    GPD
Sbjct: 149 AIYLDGGFANAKEFILKYI-LNDLEGKRLFYDSKTILQEMVQGGQEKGIVYQLVGEEGPD 207

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKR 209
           H+  F V   I G A   G+  +K+
Sbjct: 208 HNKSFRVEAVIGGEAFGCGIGRTKK 232


>gi|289168052|ref|YP_003446321.1| ribonuclease III [Streptococcus mitis B6]
 gi|288907619|emb|CBJ22456.1| ribonuclease III [Streptococcus mitis B6]
          Length = 232

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 111/222 (50%), Gaps = 7/222 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62
           + L+      FA+++LLE A TH+S ++ ++       ERLEFLGD +L LLIS  L+  
Sbjct: 6   TVLKNHFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLYKK 65

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +    EG+LS     +V  E+ +  AR+     FI++     K       +I  D  E+ 
Sbjct: 66  YPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILGDAFEAF 125

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180
           + AL LD  +     F+ +    + +++G+F    D KT LQE       VT  Y+V   
Sbjct: 126 LGALLLDKDVAKVKEFIYQVMIPK-VEAGEFEMITDYKTHLQELLQVNGDVTIRYQVISE 184

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +GP HD  F V V + G +  QG   SK+ AEQ AA   +++
Sbjct: 185 TGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226


>gi|115377692|ref|ZP_01464885.1| ribonuclease III [Stigmatella aurantiaca DW4/3-1]
 gi|310821555|ref|YP_003953913.1| ribonuclease III [Stigmatella aurantiaca DW4/3-1]
 gi|115365298|gb|EAU64340.1| ribonuclease III [Stigmatella aurantiaca DW4/3-1]
 gi|309394627|gb|ADO72086.1| Ribonuclease III [Stigmatella aurantiaca DW4/3-1]
          Length = 240

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 114/222 (51%), Gaps = 6/222 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLF 60
           R  TLE R+G  F  + L   ALTH S  + ++++     ERLEFLGD ++ L IS  L 
Sbjct: 9   RVQTLETRLGVPFLRKDLGLAALTHKSYFNEHRDAGLQDNERLEFLGDAVVDLAISHRLM 68

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELS     +V+ E  +++AR L L   + +             S+ AD +E
Sbjct: 69  ERFPLAAEGELSKLRALIVNEEGLARIARRLSLGELLLLGRGEEMTGGREKNSLLADALE 128

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +++ A++L  G+E     VD+++ +    +  G+   D KT+LQE A  +  V P Y+V 
Sbjct: 129 AVVGAVFLGAGMEPVMVLVDQHFAEALDGVAQGRSGLDYKTKLQEDAQTRLKVPPRYRVV 188

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             +GPDH+  F V V I     A+    +K+ AEQ AA   L
Sbjct: 189 AEAGPDHEKTFEVEVSIGSELYARATGRNKKEAEQAAARATL 230


>gi|259046634|ref|ZP_05737035.1| ribonuclease III [Granulicatella adiacens ATCC 49175]
 gi|259036799|gb|EEW38054.1| ribonuclease III [Granulicatella adiacens ATCC 49175]
          Length = 236

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/214 (33%), Positives = 113/214 (52%), Gaps = 7/214 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFD 64
           L+++   +F N +LL +A+THSS ++ ++E      ER+EFLGD +L L IS  LF  F 
Sbjct: 11  LKEKFDISFNNEALLMEAMTHSSYANEHKEMKGIYNERIEFLGDAVLELTISDWLFRQFP 70

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             +EG+L+     +V  ++ S +A+E  L  ++ +             +I  DV E+ I 
Sbjct: 71  HFQEGQLTKLRAQIVCEDSLSLLAKECSLNEYLLLGKGETLSGGREKPAILCDVFEAFIG 130

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           ALYLD G+     F++     + +K+G++    D KTELQE+      V   Y++    G
Sbjct: 131 ALYLDKGVNEVQRFLNLVVIPK-IKNGRYELITDFKTELQEYLQQNGPVHIRYELVKEEG 189

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           P HD  FTV + + G         +K+AAEQ+AA
Sbjct: 190 PSHDKTFTVQLIVDGKKYKTASGKTKKAAEQMAA 223


>gi|82702876|ref|YP_412442.1| ribonuclease III [Nitrosospira multiformis ATCC 25196]
 gi|82410941|gb|ABB75050.1| RNAse III [Nitrosospira multiformis ATCC 25196]
          Length = 230

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/215 (35%), Positives = 110/215 (51%), Gaps = 10/215 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L +++GY F    LL +ALTH S  HS   + ERLEFLGD +L   ++ L+F+HF   
Sbjct: 11  AALCRKLGYTFRRPELLRQALTHRS--HSIPHN-ERLEFLGDAVLNCAVAGLIFHHFPDL 67

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG LS    +LV+ +  +++A+ L+L   IR      K       SI AD +E++I A+
Sbjct: 68  SEGSLSRIRANLVNQKMLAELAQTLELGKLIRFGEGELKSGGDKRPSILADALEAVIGAI 127

Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD G E A   V+  +      L +    +D KT LQE+  ++    P Y V    G  
Sbjct: 128 YLDAGFEQAEKTVENLFIPSLGELNTHALGKDPKTLLQEYLQSRKLALPRYAVVATRGEA 187

Query: 185 HDPRFTVVVEISGLAP---AQGMDCSKRAAEQVAA 216
           H  +F V   IS   P     G   S+R+AEQ AA
Sbjct: 188 HQQQFQVECVIS--RPQIRTLGEGTSRRSAEQHAA 220


>gi|293604014|ref|ZP_06686427.1| ribonuclease III [Achromobacter piechaudii ATCC 43553]
 gi|292817618|gb|EFF76686.1| ribonuclease III [Achromobacter piechaudii ATCC 43553]
          Length = 253

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 114/217 (52%), Gaps = 14/217 (6%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  +TLE R+ + F + +LLE+ALTH S  H  + + ERLEFLGD +L  +++ +LF  +
Sbjct: 1   MSLATLENRLDHHFGDPALLEQALTHRS--HGARHN-ERLEFLGDSVLNFVVAAMLFERY 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV   + + +A+ L+L+ ++R+     K       SI AD VE+L 
Sbjct: 58  SKIDEGDLSRLRANLVKQASLADIAQRLELSQYLRLGEGELKSGGFRRPSILADTVEALF 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LD G + A   + + ++    ++      +DAKT LQE+   +    P Y V    
Sbjct: 118 GAVFLDAGFDAARRVIVRQYQPVLASVDPKTLGKDAKTLLQEFLQGRKLALPLYTVVATH 177

Query: 182 GPDHDPRFTV-----VVEISGLAPAQGMDCSKRAAEQ 213
           G  H  +F V      +EI   AP      S+RAAEQ
Sbjct: 178 GAAHSQQFEVECAIPALEIKVTAPG----ASRRAAEQ 210


>gi|283850854|ref|ZP_06368140.1| ribonuclease III [Desulfovibrio sp. FW1012B]
 gi|283573777|gb|EFC21751.1| ribonuclease III [Desulfovibrio sp. FW1012B]
          Length = 239

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 115/226 (50%), Gaps = 9/226 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY---ERLEFLGDRILGLLISTLLFNH 62
           ++ +++ +G+AFA   LL  ALTHSS ++   ++    ERLEFLGD +L L +S  LF  
Sbjct: 5   FAVVQEALGHAFARPELLTAALTHSSWANERGDALGHNERLEFLGDAVLELCVSEELFVR 64

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F  A EGEL++  + LV+  + + +AR L L   + +             ++ +D  E++
Sbjct: 65  FPEAPEGELTLLRSQLVNEGSLAAMARRLSLEEHVLLGKGEENQGGRTRPALLSDAFEAV 124

Query: 123 IAALYLDGGIEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           I A++LDGG   A  F+ +     W  R   +    +D K+ LQE+        P Y + 
Sbjct: 125 IGAIFLDGGYAAAKGFIIRAFAGSWPMR--PAAPKTKDFKSRLQEYTQKAHKSRPVYSLL 182

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              GP+HD RF V + +        ++ S + AEQ+AA   L+  G
Sbjct: 183 GSEGPEHDKRFQVRLTLPDGQVITAVEKSVKKAEQMAALRALEALG 228


>gi|322391777|ref|ZP_08065242.1| ribonuclease III [Streptococcus peroris ATCC 700780]
 gi|321145257|gb|EFX40653.1| ribonuclease III [Streptococcus peroris ATCC 700780]
          Length = 232

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 110/222 (49%), Gaps = 7/222 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62
           + L+ R    FA+++LLE A TH+S ++ ++       ERLEFLGD +L LLIS  L+  
Sbjct: 6   TVLKNRFAIEFADQNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLYKK 65

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +    EG+LS     +V  E+ +  AR+     FI++     K       +I  D  E+ 
Sbjct: 66  YPKKPEGDLSKLRAMIVREESLAGFARDCQFDEFIKLGKGEEKSGGRHRDTILGDAFEAF 125

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFR 180
           + AL LD  +     F+      + +++G F    D KT LQE       V   Y+VT  
Sbjct: 126 LGALLLDKDVATVKNFIYTVMIPK-VETGDFEMITDYKTHLQELLQVNGDVDICYQVTSE 184

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +GP HD  F V V + G +  +G   SK+ AEQ AA   +++
Sbjct: 185 TGPAHDKIFEVEVLVEGTSIGKGQGRSKKLAEQEAAKNAVEK 226


>gi|332976630|gb|EGK13471.1| ribonuclease III [Desmospora sp. 8437]
          Length = 231

 Score =  105 bits (263), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHS-----YQESYERLEFLGDRILGLLISTL 58
           +  + L + IG +  N+ L  +A TH+S +H      +Q   ERLEFLGD +L L +S  
Sbjct: 1   MNLAELGQTIGLSLQNKELFLQAFTHTSFAHERKGERHQPDNERLEFLGDAVLELTVSEH 60

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L++ F   KEG+L+     +V   + +  AR+L+    +R+             ++ ADV
Sbjct: 61  LYHRFPHLKEGDLTRMRARIVCEPSLASFARDLNFGKHVRLGKGEELTGGRNRPALLADV 120

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRA----LKSGKFRRDAKTELQEWAHAKFGVTPE 174
            E+ I ALYL+ G++    F+++    R     L  G    DAK+ LQE    +   +  
Sbjct: 121 FEAFIGALYLEKGLDGVIDFMNRVILPRIDDQWLAQGS---DAKSRLQEAVQQEHLGSLV 177

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           Y++    GP HD +F   V +SG     G   SK+ AEQ AAAE L+R
Sbjct: 178 YQIVDVQGPAHDRQFVAEVWLSGEKLGTGAGRSKKEAEQQAAAEGLQR 225


>gi|291459099|ref|ZP_06598489.1| ribonuclease III [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291418353|gb|EFE92072.1| ribonuclease III [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 234

 Score =  105 bits (263), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 116/220 (52%), Gaps = 6/220 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLF 60
           R S LE+++ Y+F +R LL  ALTH S S+      + S +RLEFLGD +L L  S  L+
Sbjct: 3   RLSLLEEKLAYSFRDRELLLHALTHPSYSNEQGDPKEASNQRLEFLGDAVLELAASDFLY 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           +     +EG ++    +LV   T ++ AR+L L  ++ +     ++      S+ +D  E
Sbjct: 63  HRVPVIQEGVMTKLRAALVCEPTLAEAARKLSLGDYLVLGRGEGREGIQLRDSVLSDAFE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           ++I A+YLDGG   A  F+ K      +++    RDAKT LQE+  +K  ++  Y +   
Sbjct: 123 AVIGAIYLDGGFSAAQCFI-KRLVLSDIENKSLYRDAKTMLQEYV-SKQRLSLRYALLEE 180

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           SGP H+  + V   I      +G   SK+ AEQ AA + L
Sbjct: 181 SGPCHERFYRVSALIEEKEYGRGEGSSKKKAEQAAAYQAL 220


>gi|313890255|ref|ZP_07823889.1| ribonuclease III [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121360|gb|EFR44465.1| ribonuclease III [Streptococcus pseudoporcinus SPIN 20026]
          Length = 230

 Score =  105 bits (263), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 116/219 (52%), Gaps = 7/219 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
           L++     F ++ LLE A TH+S ++ ++       ERLEFLGD +L L+IS  LF  + 
Sbjct: 8   LKETFNIVFNDQDLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIISEYLFKKYP 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           S  EG+LS   + +V  E+ +  +R     ++I++     K       +I  D+ E+ + 
Sbjct: 68  SKPEGDLSKLRSMIVREESLAGFSRFCSFDTYIKLGKGEEKSGGRNRDTILGDLFEAFLG 127

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           AL LD GIE    F+++    +  K G F   +D KT LQE   AK  V  +Y+V   SG
Sbjct: 128 ALLLDKGIEDVRLFLNQVMIPQVEK-GNFEKVKDYKTSLQEVLQAKGDVQIDYQVVKESG 186

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           P H  +F V + ++    ++G+  SK+ AEQ AA + L+
Sbjct: 187 PAHAKQFEVAILVNQEIISRGIGKSKKIAEQNAAKKALE 225


>gi|312877236|ref|ZP_07737204.1| ribonuclease III [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795950|gb|EFR12311.1| ribonuclease III [Caldicellulosiruptor lactoaceticus 6A]
          Length = 222

 Score =  105 bits (263), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 119/220 (54%), Gaps = 9/220 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +E+ +GY F +++LL  ALTH S +HS +  YERLEFLGD  L L +S  LF HF    E
Sbjct: 4   IERALGYTFKDKNLLRLALTHKSATHSNKNCYERLEFLGDAALELAVSKYLFVHFPELSE 63

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GEL+    ++V ++T S+VA +L+L + I      + +      SI ADV+E++  A+++
Sbjct: 64  GELTNIRAAVVCSQTLSKVAEKLNLKNHIIFGKREKMEKFHENKSILADVLEAIFGAIFI 123

Query: 129 DGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           + G ++    +    K   Q+A+ +GK   D KT+LQE    +       K+ ++     
Sbjct: 124 ESGFDIVEKIIVNLLKPYIQKAV-TGKLFYDYKTKLQEIVQRE----GNKKIVYKDCEII 178

Query: 186 DPR-FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           + + F   + I G   ++G   SK+ A+Q AA + L   G
Sbjct: 179 EKKYFKSELFIEGKKVSEGYGTSKKEAQQDAAYKFLLEMG 218


>gi|331002416|ref|ZP_08325934.1| ribonuclease III [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330410232|gb|EGG89666.1| ribonuclease III [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 232

 Score =  105 bits (263), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 115/224 (51%), Gaps = 13/224 (5%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
           L++ +GY + N+ LL++ALTHSS ++ +Q     S ERLEFLGD +L L+ S   +  + 
Sbjct: 8   LQELLGYEYKNKELLKQALTHSSYANEHQLGKNGSNERLEFLGDAVLELVSSEFFYGVYP 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGEL+    S V        A+ + L+ F+++             SI +D  E++I 
Sbjct: 68  EKPEGELTKIRASFVCEPALVDCAKNIKLSEFLKLGKGEEHTGGRMRPSIISDTFEAIIG 127

Query: 125 ALYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           ++YLDGG     EV   F+   ++ +      F  D+KT LQE   ++     EY +   
Sbjct: 128 SIYLDGGFASAKEVILKFILNEYENKV-----FFYDSKTILQEVIQSQDSKPVEYTLLSE 182

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            GPDH  +F V V I G     G   SK+AAEQ AA E LK+ G
Sbjct: 183 EGPDHLKKFVVAVNIDGKRAGVGEGVSKKAAEQAAAYEALKKLG 226


>gi|303242104|ref|ZP_07328595.1| ribonuclease III [Acetivibrio cellulolyticus CD2]
 gi|302590398|gb|EFL60155.1| ribonuclease III [Acetivibrio cellulolyticus CD2]
          Length = 235

 Score =  105 bits (262), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 112/221 (50%), Gaps = 6/221 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHF 63
           + EK I Y F ++  L  ALTHSS ++ Y+     S ERLEFLGD +L ++IS  ++ ++
Sbjct: 13  SFEKIIKYEFKDKDNLVLALTHSSYANEYKSEKLISNERLEFLGDSVLSVVISENIYKNY 72

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EGE++    ++V   +    A  L +  ++ +            TSI +D +E+LI
Sbjct: 73  SHLSEGEMTKFRANVVCEASLENCANNLSIGQYLLLGKGEEITGGRTRTSILSDAMEALI 132

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+YLDGG+E A +FV    ++    S  G+   D KT+LQE           Y++    
Sbjct: 133 GAIYLDGGLESAKSFVLSQMEKFIDDSIKGEIFMDYKTQLQEIIQKNNDQKVTYEIIDEK 192

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           GPDH   F   V++       G   +K+ AEQ+AA   LK+
Sbjct: 193 GPDHSKIFVSQVKLDDKVIGVGEGRTKKEAEQMAAKTSLKK 233


>gi|163846691|ref|YP_001634735.1| ribonuclease III [Chloroflexus aurantiacus J-10-fl]
 gi|222524496|ref|YP_002568967.1| Ribonuclease III [Chloroflexus sp. Y-400-fl]
 gi|254807243|sp|A9WJ69|RNC_CHLAA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807245|sp|B9LB70|RNC_CHLSY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|163667980|gb|ABY34346.1| Ribonuclease III [Chloroflexus aurantiacus J-10-fl]
 gi|222448375|gb|ACM52641.1| Ribonuclease III [Chloroflexus sp. Y-400-fl]
          Length = 244

 Score =  105 bits (262), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 100/199 (50%), Gaps = 6/199 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISH------SYQESYERLEFLGDRILGLLISTL 58
           R + LE+ IG  F +R+LL+ A  H S+ +      ++    ERLEFLGD +L  + +T 
Sbjct: 4   RLAELERAIGITFRDRTLLQTAFMHRSLFNEQPHLLNHLTDNERLEFLGDSVLHFVTTTW 63

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF  F    E  L+    +LVS +  ++ A + +L  +  +S             + AD+
Sbjct: 64  LFETFPDQDEATLTNWRAALVSTKGLAECAAQFNLGQYAYLSRGEDNPGGRSRQKLLADL 123

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
            E+L+ A+YLD G+E A  F+  +W+ R  +      D  T LQE   A+F   P+Y + 
Sbjct: 124 FEALVGAIYLDQGLETARAFIVPFWQARIEQIIHIDLDPTTRLQELMQARFKQLPDYSIE 183

Query: 179 FRSGPDHDPRFTVVVEISG 197
              GP+H   + + V ++G
Sbjct: 184 EERGPEHQREYVMAVTVAG 202


>gi|256830196|ref|YP_003158924.1| ribonuclease III [Desulfomicrobium baculatum DSM 4028]
 gi|256579372|gb|ACU90508.1| ribonuclease III [Desulfomicrobium baculatum DSM 4028]
          Length = 242

 Score =  105 bits (262), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/215 (35%), Positives = 112/215 (52%), Gaps = 3/215 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESY-ERLEFLGDRILGLLISTLLFNHFDSAK 67
           L+  I Y F    LL +ALTHSS ++ +   + ERLEFLGD +L L +S  LF  F   +
Sbjct: 13  LQNEIHYEFKQVKLLIQALTHSSHANEHGCPHNERLEFLGDAVLELAVSQELFRKFPEVQ 72

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG L+   ++LVS    +Q AR + L + + +             S+ +D +E+++ A+Y
Sbjct: 73  EGHLTKMRSALVSEGALAQAARRIHLGACLLLGRGEDVQGGREKNSVLSDALEAVLGAVY 132

Query: 128 LDGGIEVAGTFVD-KYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           LDGG+E A T V+  Y  Q       FR RD K+ LQE     +   P Y +    GP+H
Sbjct: 133 LDGGLERAITCVNFLYAGQWPTPPETFRPRDFKSLLQEATQRIWKARPSYALRESHGPEH 192

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             ++TVVV +      +  + S R AEQ AA + L
Sbjct: 193 AKQYTVVVTMPDKTEVECEERSMRKAEQGAAEQAL 227


>gi|270292630|ref|ZP_06198841.1| ribonuclease III [Streptococcus sp. M143]
 gi|270278609|gb|EFA24455.1| ribonuclease III [Streptococcus sp. M143]
          Length = 232

 Score =  105 bits (262), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 110/222 (49%), Gaps = 7/222 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62
           + L+KR    FA+++LLE A TH+S ++ ++       ERLEFLGD +L LLIS  L+  
Sbjct: 6   TVLKKRFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLYKK 65

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +    EG+LS     +V  E+ +  AR+     FI++     K       +I  D  E+ 
Sbjct: 66  YPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILGDAFEAF 125

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180
           + AL LD  +     F+ +    + ++ G F    D KT LQE       V   Y+VT  
Sbjct: 126 LGALLLDKDVARVKEFIYQVMIPK-VEVGDFEMITDYKTHLQELLQVNGDVDIRYQVTSE 184

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            GP HD  F V V + G +  +G   SK+ AEQ AA   +++
Sbjct: 185 MGPAHDKVFDVEVLVEGKSIGKGQGRSKKLAEQEAAKNAVEK 226


>gi|308271416|emb|CBX28024.1| Ribonuclease 3 [uncultured Desulfobacterium sp.]
          Length = 220

 Score =  105 bits (262), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/210 (35%), Positives = 112/210 (53%), Gaps = 19/210 (9%)

Query: 21  SLLEKALTHSSISHSYQESY----ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           + L ++L HSS  +   ++     ERLEFLGD +L L I  ++ N F    EG+LS   +
Sbjct: 2   NFLVESLRHSSFVNEQSDTQIRDNERLEFLGDAVLNLAIGHIIINRFPELDEGDLSRVRS 61

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT------SIQADVVESLIAALYLDG 130
           +LV+    ++VAR LDL S+I++          F+T      SI A+  E+++AA+YLDG
Sbjct: 62  NLVNELQVAEVARSLDLGSYIQLGK------GEFLTNGRNKNSILANTFEAVVAAIYLDG 115

Query: 131 GIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           G + A   ++K +      SGK     D K+++QE       + P Y V   SGPDHD  
Sbjct: 116 GYDNAFRIIEKIYLPILKLSGKSAAAYDFKSKVQELVQTGQEIKPAYNVVEESGPDHDKI 175

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           F V + I+ L    G   SK+ AEQ AA++
Sbjct: 176 FKVELTINDLQTV-GYGKSKKLAEQDAASK 204


>gi|298571391|gb|ADI87733.1| RNase III [uncultured Nitrospirae bacterium MY3-5B]
          Length = 263

 Score =  105 bits (262), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 117/235 (49%), Gaps = 17/235 (7%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLIS-TLLFN 61
           ++LE+ I Y F ++ LL +++TH S  H      Q   ER+EFLGD +LGL IS TL   
Sbjct: 8   TSLEQSINYYFNDKGLLIESVTHRSYYHECLDKSQPYNERVEFLGDAVLGLAISETLYTE 67

Query: 62  HFDSAK----------EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111
           H    K          E E+S   + LVS +  SQ+A++++L +++++            
Sbjct: 68  HVFCRKNDKTIHTIFSESEMSRLKSYLVSKKILSQLAQDINLGNYLKLGKGEEMTGGREK 127

Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKF 169
            S+ A+ +E++  A++LDGG E A   +   ++     + S     D KTELQE +   F
Sbjct: 128 LSLLANTLEAIFGAVFLDGGYEAAKAVILGLYQPILTQILSNHTSFDYKTELQEISQKLF 187

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              PEYK+   SG DHD  F   V + G     G   +K+ A+  AA   L+  G
Sbjct: 188 SSLPEYKLVLESGNDHDKDFVYEVYLDGKCMGTGSGKNKKTAQSAAACMALETLG 242


>gi|37928957|gb|AAP70337.1| ribonuclease III [Ehrlichia ruminantium]
 gi|37928988|gb|AAP70339.1| ribonuclease III [Ehrlichia ruminantium]
 gi|37929002|gb|AAP70341.1| ribonuclease III [Ehrlichia ruminantium]
 gi|37929010|gb|AAP70343.1| ribonuclease III [Ehrlichia ruminantium]
          Length = 171

 Score =  105 bits (262), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 91/165 (55%)

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
           +LFN F    EG L+ +  +LV      ++A+ ++L  FI +S   R    +  ++   +
Sbjct: 1   MLFNIFPYDTEGNLAKKKTALVCGTKLVEIAQSINLGIFIIMSDGERSCGGANNSNNLEN 60

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
            +E+LI A+YLDGG++ A  F+  +WK  A       +DAKT LQEWA +K    P Y +
Sbjct: 61  ALEALIGAIYLDGGLKAAKDFIFLFWKNSATHMKVPPQDAKTILQEWAQSKGFPAPSYHI 120

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             +SGPDH+P FTV V I+          +K+ AEQ AA+ +L +
Sbjct: 121 INKSGPDHNPCFTVEVRINSHETLHATGHNKKLAEQKAASLMLAK 165


>gi|238750386|ref|ZP_04611887.1| Ribonuclease 3 [Yersinia rohdei ATCC 43380]
 gi|238711317|gb|EEQ03534.1| Ribonuclease 3 [Yersinia rohdei ATCC 43380]
          Length = 204

 Score =  105 bits (262), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/201 (36%), Positives = 105/201 (52%), Gaps = 6/201 (2%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
           +ALTH S S  + E   RLEFLGD IL  +I+  L+  F    EG++S    +LV   T 
Sbjct: 3   QALTHRSASSKHNE---RLEFLGDSILSFVIANELYRRFPRVDEGDMSRMRATLVRGNTL 59

Query: 85  SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
           +++ARE DL   +R+     K       SI AD VE+LI  ++LD  I      +  +++
Sbjct: 60  AEMAREFDLGECLRLGPGELKSGGFRRESILADTVEALIGGIFLDSDIHTIERLILDWYR 119

Query: 145 QR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA-PA 201
            R   +  G  ++D KT LQE+   +    P Y V    G  HD  FT+  ++SGL+ P 
Sbjct: 120 SRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLSEPV 179

Query: 202 QGMDCSKRAAEQVAAAEVLKR 222
            G   S+R AEQ AA + LK+
Sbjct: 180 VGAGSSRRKAEQAAAEQALKQ 200


>gi|297588527|ref|ZP_06947170.1| ribonuclease III [Finegoldia magna ATCC 53516]
 gi|297573900|gb|EFH92621.1| ribonuclease III [Finegoldia magna ATCC 53516]
          Length = 238

 Score =  105 bits (262), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 112/219 (51%), Gaps = 7/219 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISH---SYQE-SYERLEFLGDRILGLLISTLLFNHFD 64
           LE+++ Y F + +LL  A  HSS  +   SY++ S ERLEFLGD +L L++S  L+N   
Sbjct: 12  LEEKLDYRFTDINLLNLAFFHSSYGNENKSYKDISNERLEFLGDSVLDLIVSDFLYNSKS 71

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           S KEG ++   + +V  ++ S +A+ L+L  ++ +         S   S+ AD  E++  
Sbjct: 72  SLKEGAMTKIRSQMVCEKSFSNMAKYLELGKYLMMGHGEFISGGSEKPSVLADTFEAVFG 131

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFRS 181
           A+YLD G E A   V+  +K   +   + +    D KT LQE          +YK+    
Sbjct: 132 AIYLDSGYESAFKIVENKFKSLFIAEIETKSSFIDYKTMLQENNQKNSRDKLKYKIVKEE 191

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           GPDHD +F V V    L    G   SK+ AEQ AA   L
Sbjct: 192 GPDHDKKFYVDVYEGNLVIGSGFGSSKKHAEQDAARNAL 230


>gi|306829619|ref|ZP_07462809.1| ribonuclease III [Streptococcus mitis ATCC 6249]
 gi|304428705|gb|EFM31795.1| ribonuclease III [Streptococcus mitis ATCC 6249]
          Length = 232

 Score =  105 bits (262), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 111/222 (50%), Gaps = 7/222 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62
           + L+ R    FA++ LLE A TH+S ++ ++       ERLEFLGD +L LLIS  L+  
Sbjct: 6   TVLKDRFAIEFADKKLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLYKK 65

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +    EG+LS     +V  E+ +  AR+     FI++     K       +I  D  E+ 
Sbjct: 66  YPRKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILGDAFEAF 125

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFR 180
           + AL LD  +     F+ +    + +++G F   +D KT LQE       V   Y+VT  
Sbjct: 126 LGALLLDKDVVRVKEFIYQVMIPK-VEAGDFEMIKDYKTHLQELLQVNGDVDIRYQVTSE 184

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +GP HD  F V V + G +  +G   SK+ AEQ AA   +++
Sbjct: 185 TGPAHDKIFDVEVLVEGKSIGKGQGRSKKLAEQEAAKNAVEK 226


>gi|251772774|gb|EES53336.1| Ribonuclease III [Leptospirillum ferrodiazotrophum]
          Length = 366

 Score =  105 bits (262), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 118/250 (47%), Gaps = 46/250 (18%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQ-----ESYERLEFLGDRILGLLISTLLFNH 62
           TL + +G  F +   +E+ALTH S SH         +YERLEFLGDR++GL++S  L N 
Sbjct: 15  TLIRMLGLPFKDSFRIEEALTHRSASHERGRKKPIPNYERLEFLGDRVVGLIVSEYLLNM 74

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +  A EGE+   F+++VS +T + +AR +DL S++ +             S+ AD  E+L
Sbjct: 75  WPQATEGEVGQVFSTIVSTQTLASIARRMDLGSYMILGKGSNSSGERENASLLADTFEAL 134

Query: 123 IAALYLDGGIEVAGTFVDKYWKQ------RALKSGKFRR--------------------- 155
            AA+Y + G+E     +  ++ Q      RA++S   R                      
Sbjct: 135 TAAIYCEYGLETTRQILIPWFAQPLQEILRAIESAPPREPRRATVPEPAPSPVVTVTAPR 194

Query: 156 --------------DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201
                         + K  +Q+WA   FG+ PE  +   SGP H  RF + + + G+   
Sbjct: 195 SATPSPRERPKHPPNYKLLIQKWAQQNFGLLPEVVLIEESGPSHQKRFVMGLNLGGILLG 254

Query: 202 QGMDCSKRAA 211
           +G D +KR A
Sbjct: 255 EGSDRTKRGA 264


>gi|146306507|ref|YP_001186972.1| ribonuclease III [Pseudomonas mendocina ymp]
 gi|189043331|sp|A4XSC4|RNC_PSEMY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|145574708|gb|ABP84240.1| RNAse III [Pseudomonas mendocina ymp]
          Length = 229

 Score =  105 bits (262), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 82/230 (35%), Positives = 119/230 (51%), Gaps = 22/230 (9%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S LE+++G++F ++ L+  ALTH S +     + ERLEFLGD IL  +    LF  F  A
Sbjct: 6   SRLERKLGHSFKDQDLMILALTHRSFAG---RNNERLEFLGDAILNFVAGEALFERFPQA 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +EG+LS     LV  ET + +AR  +L  ++R+ S   K       SI AD +E+LI A+
Sbjct: 63  REGQLSRLRARLVKGETLAVLARGFELGEYLRLGSGELKSGGFRRESILADALEALIGAI 122

Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKF--------RRDAKTELQEWAHAKFGVTPEYK 176
           YLD G++ A        ++R L   SG+          +D KT LQE+  ++    P Y+
Sbjct: 123 YLDAGMDAA--------RERVLDWLSGELDGLTLIDTNKDPKTRLQEFLQSRACELPRYE 174

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKREGI 225
           V    G  H   F V  +++ L     G   S+R AEQVAAA  L   G+
Sbjct: 175 VVDIQGEPHCRTFMVECQVALLNEKTLGQGGSRRIAEQVAAAAALIALGV 224


>gi|37929038|gb|AAP70351.1| ribonuclease III [Ehrlichia ruminantium]
 gi|37929053|gb|AAP70353.1| ribonuclease III [Ehrlichia ruminantium]
 gi|37929097|gb|AAP70355.1| ribonuclease III [Ehrlichia ruminantium]
 gi|37929705|gb|AAP70357.1| ribonuclease III [Ehrlichia ruminantium]
 gi|37929713|gb|AAP70359.1| ribonuclease III [Ehrlichia ruminantium]
          Length = 171

 Score =  105 bits (261), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 90/165 (54%)

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
           +LFN F    EG L+ +  +LV      ++A+ ++L  FI +S   R    +  ++   +
Sbjct: 1   MLFNIFPYDTEGNLAKKKTALVCGTKLVEIAQSINLGIFIIMSDGERSCGGANNSNNLEN 60

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
            +E+LI A+YLDGG+  A  F+  +WK  A       +DAKT LQEWA +K    P Y +
Sbjct: 61  ALEALIGAIYLDGGLNAAKDFIFLFWKNSATHMKVPPQDAKTILQEWAQSKGFPAPSYHI 120

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             +SGPDH+P FTV V I+          +K+ AEQ AA+ +L +
Sbjct: 121 INKSGPDHNPCFTVEVRINSHETLHATGHNKKLAEQKAASLMLAK 165


>gi|238784187|ref|ZP_04628200.1| Ribonuclease 3 [Yersinia bercovieri ATCC 43970]
 gi|238796735|ref|ZP_04640241.1| Ribonuclease 3 [Yersinia mollaretii ATCC 43969]
 gi|238714896|gb|EEQ06895.1| Ribonuclease 3 [Yersinia bercovieri ATCC 43970]
 gi|238719466|gb|EEQ11276.1| Ribonuclease 3 [Yersinia mollaretii ATCC 43969]
          Length = 204

 Score =  105 bits (261), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/201 (36%), Positives = 105/201 (52%), Gaps = 6/201 (2%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
           +ALTH S S  + E   RLEFLGD IL  +I+  L+  F    EG++S    +LV   T 
Sbjct: 3   QALTHRSASSKHNE---RLEFLGDSILSFVIANELYRRFPRVDEGDMSRMRATLVRGNTL 59

Query: 85  SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
           +++ARE DL   +R+     K       SI AD VE+LI  ++LD  I +    +  +++
Sbjct: 60  AEMAREFDLGECLRLGPGELKSGGFRRESILADTVEALIGGIFLDSDIHMIERLILDWYR 119

Query: 145 QR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APA 201
            R   +  G  ++D KT LQE+   +    P Y V    G  HD  FT+  ++SGL  P 
Sbjct: 120 SRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLNEPV 179

Query: 202 QGMDCSKRAAEQVAAAEVLKR 222
            G   S+R AEQ AA + LK+
Sbjct: 180 IGTGSSRRKAEQAAAEQALKQ 200


>gi|78356751|ref|YP_388200.1| ribonuclease III [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
 gi|90101625|sp|Q310Z1|RNC_DESDG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|78219156|gb|ABB38505.1| RNAse III [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 229

 Score =  105 bits (261), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 114/221 (51%), Gaps = 5/221 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNH 62
           +  L+  + Y FA+  LLE ALTHSS ++      E  ERLE+LGD +L L +S  LF  
Sbjct: 2   FEKLQDVLCYRFADVRLLETALTHSSYANERGTEIEHNERLEYLGDAVLELTVSEQLFTR 61

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F  A+EG+L+     LVS  + +++AREL L +++ +            +S+ +D  E++
Sbjct: 62  FPEAREGQLTRMRARLVSKPSLAELARELKLDTYLLLGKGEESQGGRTRSSVLSDAFEAI 121

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180
           + A++LDGG   AG  V   +  R  +  +  R  DAK+ LQE     F   P Y +   
Sbjct: 122 LGAIFLDGGYAAAGKTVLHVFSSRWPQGAEAARTKDAKSTLQELTQRLFKERPVYTLLGS 181

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           SGP+H+  F V + +      +    S + AEQ AA   L+
Sbjct: 182 SGPEHEKIFKVRLLLPDGRALETEGQSVKRAEQKAAGLALE 222


>gi|323702685|ref|ZP_08114346.1| ribonuclease III [Desulfotomaculum nigrificans DSM 574]
 gi|323532348|gb|EGB22226.1| ribonuclease III [Desulfotomaculum nigrificans DSM 574]
          Length = 204

 Score =  105 bits (261), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 70/184 (38%), Positives = 93/184 (50%), Gaps = 2/184 (1%)

Query: 41  ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
           +RLEFLGD +L LLIS  L+  F    EGEL+    + V   + ++VAR LDL   +R+ 
Sbjct: 5   QRLEFLGDAVLELLISEYLYQRFPDRTEGELTKMRAASVCEPSLAKVARGLDLGRCLRMG 64

Query: 101 SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAK 158
               +       SI AD  E+L+ A+YLD G+E A  FV +        + +G+  RD K
Sbjct: 65  RGEERSGGRERPSILADAFEALLGAIYLDHGLEAARKFVLEQLNPIITDVVAGRLDRDYK 124

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           TELQE           Y +   +GPDHD  FT  V   G    QG   SK+ AEQ AA +
Sbjct: 125 TELQERLQQNSPDPVSYVIMKETGPDHDKVFTAGVIYRGQIIGQGSGHSKKEAEQQAAKD 184

Query: 219 VLKR 222
              R
Sbjct: 185 AFNR 188


>gi|307823639|ref|ZP_07653868.1| ribonuclease III [Methylobacter tundripaludum SV96]
 gi|307735624|gb|EFO06472.1| ribonuclease III [Methylobacter tundripaludum SV96]
          Length = 227

 Score =  105 bits (261), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 76/216 (35%), Positives = 116/216 (53%), Gaps = 6/216 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L K++G  F N  L   ALTH S S +   + ERLEFLGD ILG +I+  LF  F  A E
Sbjct: 8   LCKKLGLKFNNPQLFTMALTHRSASSN---NNERLEFLGDSILGFVIAQKLFELFPGACE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G LS    SLV+  + +++AR+  L  ++ + S   K       SI +D VE++I ALY 
Sbjct: 65  GVLSRLRASLVNQGSLAELARKHQLGDYLLLGSGELKSGGFRRDSILSDAVEAIIGALYN 124

Query: 129 DGGIEVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D G++ +  ++ + +  K ++L    +++D KT+LQE   ++    P+Y +   SG  H+
Sbjct: 125 DQGMDASQQWILQLFAEKLKSLSLDNWQKDPKTQLQELMQSRKMELPDYTLMTMSGLAHE 184

Query: 187 PRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221
             F V       A P  G   S++ AEQ AA  +L+
Sbjct: 185 QTFKVKCTTPLTAEPCIGTGNSRKKAEQSAAELMLE 220


>gi|119503988|ref|ZP_01626069.1| ribonuclease III [marine gamma proteobacterium HTCC2080]
 gi|119459991|gb|EAW41085.1| ribonuclease III [marine gamma proteobacterium HTCC2080]
          Length = 229

 Score =  105 bits (261), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 75/215 (34%), Positives = 110/215 (51%), Gaps = 11/215 (5%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           +L+ R+GY+F +  +L+ ALTH S   +   + ERLEFLGD  +  +I+  L+  F  A 
Sbjct: 12  SLQNRLGYSFQDLQILKLALTHRSAGRT---NNERLEFLGDSFVNHVIAQRLYLQFPKAS 68

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG+L+   + LV     + +  +  L   + +    RK       SI AD VE++  A+ 
Sbjct: 69  EGQLTRLRSKLVRGTFLAALGEKYALGECLTLGVGERKSGGRHRASILADTVEAIAGAML 128

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFR----RDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           LD G E A   +  +W   AL  G+ +    +D+KT LQEW  A+    P Y +    GP
Sbjct: 129 LDAGYENAAPVI-LHWFADAL--GELQVDGDKDSKTLLQEWLQARNLPLPSYDLVSVEGP 185

Query: 184 DHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAA 217
           DH   F VV  I+G   A  G   S+R AEQ AA+
Sbjct: 186 DHAQEFEVVCLINGQKNAFSGRGSSRRNAEQQAAS 220


>gi|15838837|ref|NP_299525.1| ribonuclease III [Xylella fastidiosa 9a5c]
 gi|9107400|gb|AAF85045.1|AE004037_6 ribonuclease III [Xylella fastidiosa 9a5c]
          Length = 212

 Score =  105 bits (261), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 74/209 (35%), Positives = 106/209 (50%), Gaps = 6/209 (2%)

Query: 17  FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           F + SLL +AL H S    + E   RLEFLGD ++ LLI+  LF  +  A EG L+   +
Sbjct: 2   FTDPSLLLQALRHCSAGTPHNE---RLEFLGDSVVNLLIAEALFQRWPRADEGALTRARS 58

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
            LV   + + +AR + L   + +     K       SI AD VE++IAA+YLD  +    
Sbjct: 59  ELVRETSLASIARTMQLGEQLILGPGELKSGGHRRDSILADAVEAVIAAIYLDADLATCR 118

Query: 137 TFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
           T V  +++    AL  GK  +D KT LQEW  A+    P Y++ F SG  H   F V   
Sbjct: 119 TVVLPWFETALTALPVGKPEKDPKTRLQEWLQARQWSLPVYELIFESGDPHTKHFRVSCT 178

Query: 195 ISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222
           +  L    +G   S+R AEQ AA+  + +
Sbjct: 179 LGELKLRTEGEGSSRRLAEQDAASHAIDQ 207


>gi|283798076|ref|ZP_06347229.1| ribonuclease III [Clostridium sp. M62/1]
 gi|291074218|gb|EFE11582.1| ribonuclease III [Clostridium sp. M62/1]
 gi|295091753|emb|CBK77860.1| RNAse III [Clostridium cf. saccharolyticum K10]
 gi|295114861|emb|CBL35708.1| RNAse III [butyrate-producing bacterium SM4/1]
          Length = 234

 Score =  105 bits (261), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 117/230 (50%), Gaps = 8/230 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M    +  LE +I Y F ++SL+E A++HSS ++          ERLEFLGD +L ++ S
Sbjct: 1   MPREHFRELEDKIHYCFKDKSLIELAMSHSSYANEKHLGKLGCNERLEFLGDAVLEIVSS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF+ F    EG+L+    S+V   T +  A ++ L  ++ +             S+ +
Sbjct: 61  DFLFHRFPDMPEGDLTKTRASMVCEPTLAYCAEQIGLGGYLLLGKGEDATGGRTRNSVVS 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D +E+LI A+YLDGG   A  F+  Y     ++  K   D+KT LQE   A+      Y+
Sbjct: 121 DAMEALIGAIYLDGGFSCAKEFILNYVLND-MEHKKLFYDSKTILQEMVQARGTELLSYE 179

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKRE 223
           +    GPDH+  F V   I     ++G   +K+AAEQ+AA +    LKRE
Sbjct: 180 LLKEEGPDHNKTFEVAALIGEREVSRGAGRTKKAAEQMAAYQAILKLKRE 229


>gi|270308287|ref|YP_003330345.1| ribonuclease III [Dehalococcoides sp. VS]
 gi|270154179|gb|ACZ62017.1| ribonuclease III [Dehalococcoides sp. VS]
          Length = 248

 Score =  105 bits (261), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 122/226 (53%), Gaps = 8/226 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTLL 59
           L  + LE+ +G  F N SLLE+AL H+S  +        S ER+EFLGD +LG++ +  L
Sbjct: 13  LDLTELEESLGVKFENPSLLEQALIHTSWVNENPTHLNGSNERMEFLGDAVLGVIFADRL 72

Query: 60  FNHFDSAKEGELSVRFNSL-VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           ++ F   +EG+L+ RF SL V  E+  +VA  ++L +++ +          F  +  A  
Sbjct: 73  YHDFPDIQEGDLT-RFRSLLVRRESLVRVALGINLGNYLYLGRGEDVSKGRFKPANLAGA 131

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
            E+++AA+Y+D GI++    + + ++     +++     D K+ LQE   A+  +TP Y+
Sbjct: 132 FEAVLAAIYIDKGIDITREVIFRLFRTEMERVQTLSSNIDYKSRLQELIQAQMQMTPRYR 191

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +T  SGP+H+  F   V       A+G   SK+ AE  AA   L++
Sbjct: 192 ITNFSGPEHNRLFVAEVYTEDKVLAEGSGRSKKEAETSAAKAALQQ 237


>gi|77359683|ref|YP_339258.1| RNase III, ds RNA [Pseudoalteromonas haloplanktis TAC125]
 gi|76874594|emb|CAI85815.1| RNase III, ds RNA [Pseudoalteromonas haloplanktis TAC125]
          Length = 200

 Score =  105 bits (261), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 70/197 (35%), Positives = 104/197 (52%), Gaps = 5/197 (2%)

Query: 27  LTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQ 86
           +TH S  H  Q + ERLEFLGD IL  +I+  L+  F  A+EG+LS   ++LV  +T ++
Sbjct: 1   MTHRS--HKGQHN-ERLEFLGDSILSFVIANALYAKFPKAREGDLSRMRSTLVRGQTLAE 57

Query: 87  VARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQR 146
              E  L  ++R+     K       S  AD VE++I A++LD  IE  G  +  ++++R
Sbjct: 58  FGLEFGLGDYLRLGPGELKSGGFRRESTLADAVEAIIGAVFLDSDIERCGELILSWYEER 117

Query: 147 --ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
             A+  G  ++D KT LQE   A+    P Y V    G  H+  FTV   + G+     +
Sbjct: 118 LNAISPGLNQKDPKTLLQEHLQARKLSLPGYTVVDTKGQAHNQTFTVECIVDGMDSIISV 177

Query: 205 DCSKRAAEQVAAAEVLK 221
             S+R AEQ AA + LK
Sbjct: 178 GSSRRKAEQKAAEKALK 194


>gi|229822809|ref|ZP_04448879.1| hypothetical protein GCWU000282_00098 [Catonella morbi ATCC 51271]
 gi|229787622|gb|EEP23736.1| hypothetical protein GCWU000282_00098 [Catonella morbi ATCC 51271]
          Length = 247

 Score =  105 bits (261), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 66/213 (30%), Positives = 113/213 (53%), Gaps = 5/213 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTLLFNHFD 64
           +EK++   F    L+++A  H+S ++     +   YERLEFLGD +L LL S  L++ + 
Sbjct: 10  IEKQLNLTFKKPELIQQAFRHTSYANEQARRHLPHYERLEFLGDAVLELLSSEFLYHSYP 69

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EG+L+     +V  ++ + +AR+L    F+++             SI AD  E+++ 
Sbjct: 70  NLPEGKLTRMRAQIVQEKSLAYLARQLKFNQFLQLGKGEELSGGRERDSILADCFEAVLG 129

Query: 125 ALYLDGGIEVAGTFVDK-YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           A+Y D G+EVA  ++++  + Q  L  G+  +D KT  QE    +  V  +Y++  + GP
Sbjct: 130 AIYEDQGLEVAKDYLNRVMFSQHQLLLGRVTQDHKTLFQERVQKQGTVQIDYRLKDKQGP 189

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            HD  FTV + ++    A G   SK+ AE  AA
Sbjct: 190 AHDQIFTVELYVNDQHIATGQGSSKKQAEMQAA 222


>gi|15895025|ref|NP_348374.1| ribonuclease III [Clostridium acetobutylicum ATCC 824]
 gi|22654069|sp|Q97IA4|RNC_CLOAB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|15024717|gb|AAK79714.1|AE007684_2 DsRNA-specific ribonuclease III [Clostridium acetobutylicum ATCC
           824]
          Length = 230

 Score =  105 bits (261), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 74/215 (34%), Positives = 110/215 (51%), Gaps = 6/215 (2%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           ++G  F N +LL  ALTHSS ++  +  E  ERLEFLGD +L L IS   F  + +  EG
Sbjct: 13  KLGIEFQNINLLVTALTHSSYANENKNAEYNERLEFLGDAVLQLSISEYFFKKYPTISEG 72

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           EL+ +   +V   +   +     L  +IR+S            SI AD VE++IAA+YLD
Sbjct: 73  ELTKKRALVVCGMSLHSIGERWQLGKYIRMSHGEELTGGRTRVSIIADCVEAVIAAIYLD 132

Query: 130 GGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
            G + A  F+ + ++   Q A+++ K   D KT LQE   +K     +Y +    GP H 
Sbjct: 133 KGFDTAKNFILREFEGTIQNAVEN-KIILDYKTRLQEILQSKGKTDIKYTLVRHEGPPHR 191

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            +F V +       + G   +K+ AEQ AA + LK
Sbjct: 192 RKFFVNLNFDNDVKSTGEGYTKKDAEQDAACKALK 226


>gi|260828679|ref|XP_002609290.1| hypothetical protein BRAFLDRAFT_86799 [Branchiostoma floridae]
 gi|229294646|gb|EEN65300.1| hypothetical protein BRAFLDRAFT_86799 [Branchiostoma floridae]
          Length = 1490

 Score =  105 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 113/226 (50%), Gaps = 9/226 (3%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNH 62
            R +  E R G  F +  LL +A TH ++  +       +RLEFLGD ++ ++ S  L+ H
Sbjct: 1198 RLTEFESRCGMEFKHVRLLARAFTHRTVGFNNLTLGHNQRLEFLGDSVMQMVSSEYLYKH 1257

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG LS+  +SLV+  T + V+++L +  +I  S   R+   S      AD++E+ 
Sbjct: 1258 FPDHHEGHLSLLRSSLVNNRTQALVSQDLGMEEYIISSDKARQGKLSLRQKTLADLMEAF 1317

Query: 123  IAALYLDGGIEVAGTFVDK--YWKQRALKSGKFRRDAKTELQEW-----AHAKFGVTPEY 175
            + ALY+D G+E    F++   + + R     +   D K++LQ+         K    P Y
Sbjct: 1318 MGALYVDQGLEYVCVFMNVCFFPRLREFIMNQEWNDPKSQLQQCCLTLRTEGKEPDIPFY 1377

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            K+  ++GP H  ++TV V   G     G+  S + AE  AA + LK
Sbjct: 1378 KILDKAGPSHARKYTVAVYFKGERIGTGVGSSIQQAEMAAARDALK 1423



 Score = 52.0 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 9/108 (8%)

Query: 28   THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
            T S I+H+     ERLEFLGD ++  L S+ L+  F   +EG L+    ++V  +  + +
Sbjct: 1083 TPSLINHN-----ERLEFLGDAVVEFLTSSHLYFMFPDLEEGGLATYRTAIVQNQHLAVL 1137

Query: 88   ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIE 133
            A++L L  F+  +     D+C  S +    A+ +E+LI A+Y+  G+E
Sbjct: 1138 AKKLRLDEFMLYAHG--PDLCRESDLRHAMANCLEALIGAMYMQQGLE 1183


>gi|312864846|ref|ZP_07725077.1| ribonuclease III [Streptococcus downei F0415]
 gi|311099973|gb|EFQ58186.1| ribonuclease III [Streptococcus downei F0415]
          Length = 228

 Score =  105 bits (261), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 73/215 (33%), Positives = 110/215 (51%), Gaps = 8/215 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M AL    L+   G  F ++SLL+ A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MQALE-EKLKADFGIVFKDKSLLDTAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  F    EG+LS   + +V  E+ +  +++    +FI++     K       +I  
Sbjct: 60  RYLFEKFPKRPEGDLSKMRSMIVREESLAGFSKDCGFEAFIKLGKGEEKTGGRERETILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPE 174
           D+ E+ + AL LD GIEV   F+++    + ++ G +   +D KT LQE    K  V   
Sbjct: 120 DLFEAFLGALDLDQGIEVVEKFLNQVMIPK-VEVGDYEQVKDYKTALQEKLQVKGSVQIN 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           Y+V   +GP HD  F VVV   G   + G   SK+
Sbjct: 179 YRVISETGPAHDKHFEVVVSADGKDLSGGQGKSKK 213


>gi|169824545|ref|YP_001692156.1| ribonuclease III [Finegoldia magna ATCC 29328]
 gi|302380368|ref|ZP_07268838.1| ribonuclease III [Finegoldia magna ACS-171-V-Col3]
 gi|303233642|ref|ZP_07320296.1| ribonuclease III [Finegoldia magna BVS033A4]
 gi|167831350|dbj|BAG08266.1| ribonuclease III [Finegoldia magna ATCC 29328]
 gi|302311858|gb|EFK93869.1| ribonuclease III [Finegoldia magna ACS-171-V-Col3]
 gi|302495076|gb|EFL54828.1| ribonuclease III [Finegoldia magna BVS033A4]
          Length = 238

 Score =  105 bits (261), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 112/219 (51%), Gaps = 7/219 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISH---SYQE-SYERLEFLGDRILGLLISTLLFNHFD 64
           LE+++ Y F + +LL  A  HSS  +   +Y+  S ERLEFLGD +L L++S  L+N   
Sbjct: 12  LEEKLDYRFTDINLLNLAFFHSSYGNENKAYKNISNERLEFLGDSVLDLVVSDFLYNSKS 71

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           S KEG ++   + +V  ++ S +A+ L+L  ++ +         S   S+ AD  E++  
Sbjct: 72  SLKEGAMTKIRSQMVCEKSFSNMAKYLELGKYLMMGHGEFISGGSEKPSVLADTFEAVFG 131

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFRS 181
           A+YLD G E A   V+  +K   +   + +    D KT LQE    K     +YK+    
Sbjct: 132 AIYLDSGYESAFKIVENKFKSLFIAEIETKSSFIDYKTMLQENNQKKSRDKLKYKIVKEE 191

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           GPDHD +F V V    L    G   SK+ AEQ AA   L
Sbjct: 192 GPDHDKKFYVDVYEGNLVIGSGFGSSKKHAEQDAARNAL 230


>gi|52785573|ref|YP_091402.1| ribonuclease III [Bacillus licheniformis ATCC 14580]
 gi|163119429|ref|YP_078987.2| ribonuclease III [Bacillus licheniformis ATCC 14580]
 gi|319646025|ref|ZP_08000255.1| ribonuclease 3 [Bacillus sp. BT1B_CT2]
 gi|81385589|sp|Q65JQ5|RNC_BACLD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|52348075|gb|AAU40709.1| Rnc [Bacillus licheniformis ATCC 14580]
 gi|145902936|gb|AAU23349.2| ribonuclease III [Bacillus licheniformis ATCC 14580]
 gi|317391775|gb|EFV72572.1| ribonuclease 3 [Bacillus sp. BT1B_CT2]
          Length = 249

 Score =  104 bits (260), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 109/226 (48%), Gaps = 7/226 (3%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58
           A ++   ++RI   F N  LL +A THSS  + ++    E  ERLEFLGD +L L IS  
Sbjct: 17  AEQFKKFQERISVQFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQF 76

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L+  + +  EG+L+    ++V   +   +A EL     + +             ++ ADV
Sbjct: 77  LYAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGELVLLGKGEEMTGGRKRPALLADV 136

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYK 176
            E+ I ALYLD G+E   TF+  Y   + +  G F    D K++LQE+         EYK
Sbjct: 137 FEAFIGALYLDQGLEAVVTFLKAYVFPK-IDDGAFSHVMDFKSQLQEFVQRDGRGILEYK 195

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +    GP H+  F   V + G     G   SK+ AEQ AA E L +
Sbjct: 196 ILQEKGPAHNREFEANVSLKGEVLGVGSGRSKKEAEQHAAQEALAK 241


>gi|218780584|ref|YP_002431902.1| ribonuclease III [Desulfatibacillum alkenivorans AK-01]
 gi|218761968|gb|ACL04434.1| Ribonuclease III [Desulfatibacillum alkenivorans AK-01]
          Length = 535

 Score =  104 bits (260), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 112/220 (50%), Gaps = 10/220 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFD 64
           LE+ +GY F    LL +A+ HSS  + + +      ERLEFLGD +L L +S +L + + 
Sbjct: 309 LEEALGYNFKTPELLLEAMCHSSYVNEHPDCTWTHNERLEFLGDAVLNLAVSDMLMSKYS 368

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             +EG+LS    SLV+    +++AR L +   + +     +       SI AD +E++  
Sbjct: 369 ENREGDLSRLRASLVNEGQLAEIARSLGIGQHLLLGKGEARGRGWDKNSILADSLEAVFG 428

Query: 125 ALYLDGG----IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            +Y D G     +V    +     +    +    +D KT LQE+A +K  +TP Y++   
Sbjct: 429 GIYSDSGYADAFKVIKNLIAPLIPEEVAVAAA--QDYKTRLQEYAQSKLRITPSYELIRE 486

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            GPDH+  F     ++    +QG   SK+AAEQ AA EVL
Sbjct: 487 FGPDHEKTFVAQATVNKEFTSQGKGRSKKAAEQDAAREVL 526


>gi|37929016|gb|AAP70345.1| ribonuclease III [Ehrlichia ruminantium]
 gi|37929023|gb|AAP70347.1| ribonuclease III [Ehrlichia ruminantium]
 gi|37929030|gb|AAP70349.1| ribonuclease III [Ehrlichia ruminantium]
 gi|41814830|gb|AAS10486.1| ribonuclease III [Ehrlichia ruminantium]
          Length = 171

 Score =  104 bits (260), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 91/165 (55%)

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
           +LFN F    EG L+ +  +LV      ++A+ ++L  FI +S   R    +  ++   +
Sbjct: 1   MLFNIFPYDTEGNLAKKKTALVCGTKLVEIAQSINLGIFIIMSDGERSCGGAKNSNNLEN 60

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
            +E+LI A+YLDGG++ A  F+  +WK  A       +DAKT LQEWA +K    P Y +
Sbjct: 61  ALEALIGAIYLDGGLKAAKDFIFLFWKNSATHMKVPPQDAKTILQEWAQSKGFPAPSYHI 120

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             +SGPDH+P FTV V I           +K+ AEQ AA+ +L++
Sbjct: 121 INKSGPDHNPCFTVEVRIDSHETLHATGHNKKLAEQKAASLMLEK 165


>gi|227504755|ref|ZP_03934804.1| ribonuclease III [Corynebacterium striatum ATCC 6940]
 gi|227198605|gb|EEI78653.1| ribonuclease III [Corynebacterium striatum ATCC 6940]
          Length = 256

 Score =  104 bits (260), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 118/225 (52%), Gaps = 8/225 (3%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLL 59
           +A+ ++ L K +G   A+ +L   ALTH S ++   Y  + ERLEFLGD +LGL +++ L
Sbjct: 18  AAVDHAPLLKSLGVELADENL-RLALTHRSFANENGYLPNNERLEFLGDAVLGLSVASKL 76

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  + S  E ++S    S+VS    S +ARE++L   I +    +        SI AD  
Sbjct: 77  YEQYPSRPESDISKMRASIVSRYGLSDIAREIELGQHILLGKGEQSTGGRDKDSILADTT 136

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           E++  A+Y   G E A   + + ++++   A+ SG+   D KT LQE         P Y 
Sbjct: 137 EAIFGAIYRQYGFETARDVILRLFQKKIDNAVVSGR-HMDWKTNLQELCAELKAPMPVYT 195

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            T  +GP+HD  FT V  ++GL    G+  +K+ AEQ AA E  +
Sbjct: 196 AT-STGPEHDQTFTAVATVAGLTVGNGVGHNKKLAEQQAAQEACQ 239


>gi|289435148|ref|YP_003465020.1| ribonuclease III [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289171392|emb|CBH27936.1| ribonuclease III [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|313632767|gb|EFR99733.1| ribonuclease III [Listeria seeligeri FSL N1-067]
 gi|313637349|gb|EFS02832.1| ribonuclease III [Listeria seeligeri FSL S4-171]
          Length = 230

 Score =  104 bits (260), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 113/218 (51%), Gaps = 7/218 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++  L++ +G+ F +  LL++A THSS  + ++    +  ERLEFLGD +L L +S  LF
Sbjct: 3   KWEELQESVGFDFQDIELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSNYLF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N +    EG ++    ++V   +  + A  +  + ++R+     K       ++ ADV E
Sbjct: 63  NKYPDMAEGHMTKMRAAIVCEPSLVEFAEVVHFSKYVRLGKGEEKAGGRTRPALLADVFE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178
           S I ALYLD G+E    F+++    + + +G +    D KT+LQE       V  EY + 
Sbjct: 123 SFIGALYLDNGLEKVVKFLERVIFPK-IDAGAYLETVDYKTQLQEIVQRDRDVLIEYDIL 181

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             +GP H+  F   V ++G    +G   +K+ AEQ AA
Sbjct: 182 GETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAA 219


>gi|322373156|ref|ZP_08047692.1| ribonuclease III [Streptococcus sp. C150]
 gi|321278198|gb|EFX55267.1| ribonuclease III [Streptococcus sp. C150]
          Length = 229

 Score =  104 bits (260), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 69/205 (33%), Positives = 103/205 (50%), Gaps = 7/205 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
           LE+  G  F+ + LLE A TH+S ++ ++       ERLEFLGD  L L+IS  L+N + 
Sbjct: 8   LEQDFGIVFSQKDLLETAFTHTSYANEHRLLNISHNERLEFLGDAALQLVISVYLYNRYP 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EGE+S   +++V  E+ +   +      FIR+     K       +I  D+ E+ + 
Sbjct: 68  NKPEGEMSKMRSTIVREESLAGFTKACGFEQFIRLGKGEEKSGGRERATILGDLWEAFLG 127

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182
           ALYLD G+     F++K    + ++ G F R  D KTELQE       V   Y V   SG
Sbjct: 128 ALYLDQGLPAVEKFLNKVMIPK-VEEGNFDRVTDYKTELQERLQVNGTVDITYTVIEESG 186

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCS 207
           P H   FT+ V + G   + G+  S
Sbjct: 187 PAHAKEFTMQVAVDGKELSTGLGKS 211


>gi|238793773|ref|ZP_04637394.1| Ribonuclease 3 [Yersinia intermedia ATCC 29909]
 gi|238726837|gb|EEQ18370.1| Ribonuclease 3 [Yersinia intermedia ATCC 29909]
          Length = 204

 Score =  104 bits (260), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 72/201 (35%), Positives = 106/201 (52%), Gaps = 6/201 (2%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
           +ALTH S +  + E   RLEFLGD IL  +I+  L++ F    EG++S    +LV   T 
Sbjct: 3   QALTHRSANSKHNE---RLEFLGDSILSFVIANELYHRFPRVDEGDMSRMRATLVRGNTL 59

Query: 85  SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
           +++ARE DL   +R+     K       SI AD VE+LI  ++LD  I +    +  +++
Sbjct: 60  AEMAREFDLGECLRLGPGELKSGGFRRESILADTVEALIGGIFLDSDIHMIERLILDWYR 119

Query: 145 QR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APA 201
            R   +  G  ++D KT LQE+   +    P Y V    G  HD  FT+  ++SGL  P 
Sbjct: 120 SRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLNEPV 179

Query: 202 QGMDCSKRAAEQVAAAEVLKR 222
            G   S+R AEQ AA + LK+
Sbjct: 180 IGTGSSRRKAEQAAAEQALKQ 200


>gi|325509162|gb|ADZ20798.1| ribonuclease III [Clostridium acetobutylicum EA 2018]
          Length = 230

 Score =  104 bits (260), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 74/215 (34%), Positives = 110/215 (51%), Gaps = 6/215 (2%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           ++G  F N +LL  ALTHSS ++  +  E  ERLEFLGD +L L IS   F  + +  EG
Sbjct: 13  KLGIEFQNINLLVTALTHSSYANENKNAEYNERLEFLGDAVLQLSISEYFFKKYPTISEG 72

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           EL+ +   +V   +   +     L  +IR+S            SI AD VE++IAA+YLD
Sbjct: 73  ELTKKRALVVCGISLHSIGERWQLGKYIRMSHGEELTGGRTRVSIIADCVEAVIAAIYLD 132

Query: 130 GGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
            G + A  F+ + ++   Q A+++ K   D KT LQE   +K     +Y +    GP H 
Sbjct: 133 KGFDTAKNFILREFEGTIQNAVEN-KIILDYKTRLQEILQSKGKTDIKYTLVRHEGPPHR 191

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            +F V +       + G   +K+ AEQ AA + LK
Sbjct: 192 RKFFVNLNFDNDVKSTGEGYTKKDAEQDAACKALK 226


>gi|157692273|ref|YP_001486735.1| ribonuclease III [Bacillus pumilus SAFR-032]
 gi|157681031|gb|ABV62175.1| ribonuclease III [Bacillus pumilus SAFR-032]
          Length = 247

 Score =  104 bits (260), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 108/224 (48%), Gaps = 7/224 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++   ++RI   F N  LL +A THSS  + ++    E  ERLEFLGD +L L IS  LF
Sbjct: 17  QFREFQQRISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLF 76

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             + +  EG+L+    ++V   +   +A EL     + +             ++ ADV E
Sbjct: 77  AKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFE 136

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178
           + I ALYLD G+E    F++ Y   + +  G F    D K++LQE+         EY++ 
Sbjct: 137 AFIGALYLDQGLEPVERFLEAYVYPK-INDGAFSHVMDFKSQLQEFVQRDGKGVLEYRIL 195

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              GP H+  F   V + G     G   SK+ AEQ AA E L +
Sbjct: 196 HEKGPAHNREFEANVSLRGEVLGIGNGRSKKEAEQHAAQEALAK 239


>gi|89098685|ref|ZP_01171567.1| Rnc [Bacillus sp. NRRL B-14911]
 gi|89086647|gb|EAR65766.1| Rnc [Bacillus sp. NRRL B-14911]
          Length = 259

 Score =  104 bits (260), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 112/227 (49%), Gaps = 10/227 (4%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59
           +++   +K+IG +F N  LL++A THSS  + ++    E  ERLEFLGD +L L +S  L
Sbjct: 18  MQFREFQKKIGISFENEKLLKQAFTHSSYVNEHRRKPYEDNERLEFLGDAVLELTVSQFL 77

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  +    EGEL+    ++V   +    A EL+    + +             ++ ADV 
Sbjct: 78  YKKYPMMSEGELTKLRAAVVCEPSLVTFANELEFGKLVLLGKGEEMTGGRERPALLADVF 137

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177
           E+ I ALYL+ GI+    F+++    + + SG F    D K++LQE          EYK+
Sbjct: 138 EAFIGALYLEKGIDTVIGFLEQTVFPK-INSGAFSHVMDFKSQLQELVQRDGAGAIEYKI 196

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA---EVLK 221
               GP H   F   V +SG     G   SK+ AEQ AA    E+LK
Sbjct: 197 LQEKGPAHSREFVSRVSLSGNELGTGTGRSKKEAEQHAAQMALEILK 243


>gi|285019301|ref|YP_003377012.1| ribonuclease III protein [Xanthomonas albilineans GPE PC73]
 gi|283474519|emb|CBA17020.1| probable ribonuclease III protein [Xanthomonas albilineans]
          Length = 227

 Score =  104 bits (260), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 78/214 (36%), Positives = 115/214 (53%), Gaps = 6/214 (2%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71
           RIG+ F    LL +ALTH S    + E   RLEFLGD I+ LLI+  L+  +  A EG L
Sbjct: 12  RIGHRFTEPQLLAQALTHRSAGAPHNE---RLEFLGDSIVNLLIAEALYQRWPKADEGAL 68

Query: 72  SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131
           +     LV   + + + R+L+L   + +     K       SI AD VE+++AA+YLD G
Sbjct: 69  TRARAELVREASLAAIGRQLELGDRLTLGPGEMKSGGHRRDSILADAVEAVVAAIYLDAG 128

Query: 132 IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
            E     +  +++    AL  GK  +DAKT LQEW  A+    P Y++   +G +H  RF
Sbjct: 129 FETCRATILPWFESGLAALPVGKPEKDAKTRLQEWLQARQRALPAYELISETGDEHAKRF 188

Query: 190 TVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKR 222
            V   ++  +  A+G   S+R AEQ AAA V+++
Sbjct: 189 RVRCALTEPVLVAEGEGTSRRLAEQQAAAAVIEQ 222


>gi|332523874|ref|ZP_08400126.1| ribonuclease III [Streptococcus porcinus str. Jelinkova 176]
 gi|332315138|gb|EGJ28123.1| ribonuclease III [Streptococcus porcinus str. Jelinkova 176]
          Length = 230

 Score =  104 bits (260), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 119/227 (52%), Gaps = 8/227 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + L++     F ++ LLE A TH+S ++ ++       ERLEFLGD +L L+IS
Sbjct: 1   MKKLK-ALLKETFNIVFNDQDLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  +    EG+LS   + +V  E+ +  +R     ++I++     K       +I  
Sbjct: 60  EYLFKKYPHKPEGDLSKLRSMIVREESLAGFSRFCSFDTYIKLGKGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPE 174
           D+ E+ + AL LD GIE    F+++    +  K G F   +D KT LQE   AK  V  +
Sbjct: 120 DLFEAFLGALLLDKGIEEVRLFLNQVMISQVEK-GNFEKVKDYKTGLQEVLQAKGDVQID 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           Y+V   SGP H  +F V + ++    ++G+  SK+ AEQ AA + L+
Sbjct: 179 YQVVKESGPAHAKQFEVAILVNQEVISRGIGKSKKIAEQNAAKKALE 225


>gi|238788224|ref|ZP_04632019.1| Ribonuclease 3 [Yersinia frederiksenii ATCC 33641]
 gi|238723811|gb|EEQ15456.1| Ribonuclease 3 [Yersinia frederiksenii ATCC 33641]
          Length = 204

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/201 (36%), Positives = 104/201 (51%), Gaps = 6/201 (2%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
           +ALTH S S  + E   RLEFLGD IL  +I+  L+  F    EG++S    +LV   T 
Sbjct: 3   QALTHRSASSKHNE---RLEFLGDSILSFVIANELYRRFPRVDEGDMSRMRATLVRGNTL 59

Query: 85  SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
           +++ARE DL   +R+     K       SI AD VE+LI  ++LD  I      +  +++
Sbjct: 60  AEMAREFDLGECLRLGPGELKSGGFRRESILADTVEALIGGVFLDSDIHTIERLILDWYR 119

Query: 145 QR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APA 201
            R   +  G  ++D KT LQE+   +    P Y V    G  HD  FT+  ++SGL  P 
Sbjct: 120 SRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLNEPV 179

Query: 202 QGMDCSKRAAEQVAAAEVLKR 222
            G   S+R AEQ AA + LK+
Sbjct: 180 IGTGSSRRKAEQAAAEQALKQ 200


>gi|125973448|ref|YP_001037358.1| ribonuclease III [Clostridium thermocellum ATCC 27405]
 gi|256005344|ref|ZP_05430309.1| ribonuclease III [Clostridium thermocellum DSM 2360]
 gi|281417648|ref|ZP_06248668.1| ribonuclease III [Clostridium thermocellum JW20]
 gi|125713673|gb|ABN52165.1| RNAse III [Clostridium thermocellum ATCC 27405]
 gi|255990663|gb|EEU00780.1| ribonuclease III [Clostridium thermocellum DSM 2360]
 gi|281409050|gb|EFB39308.1| ribonuclease III [Clostridium thermocellum JW20]
 gi|316940315|gb|ADU74349.1| ribonuclease III [Clostridium thermocellum DSM 1313]
          Length = 236

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 113/222 (50%), Gaps = 6/222 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNH 62
           + LE+ I Y F ++  L  ALTHSS ++  ++    S ERLEFLGD +L +++S  ++ +
Sbjct: 12  NELERVIDYCFEDKMKLVLALTHSSYANECRDERITSNERLEFLGDTVLNMVVSEYIYKN 71

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
                EGE++    ++V   T ++ A+ L +  ++ +             SI +D VE+L
Sbjct: 72  CSYLAEGEMTKFRANVVCERTLAECAQNLSIGKYLLLGKGEENTGGRTRVSILSDAVEAL 131

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           I A+Y+DGG+E A TF+    ++   KS  G    D KT+LQE           Y++   
Sbjct: 132 IGAIYIDGGLESARTFILNQLEKTIEKSIQGTIFMDYKTQLQEIIQKTNEHKIAYEIIEE 191

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            GPDH   F   V++       G   +K+ AEQ+AA   L+ 
Sbjct: 192 KGPDHSKVFVAQVKVDEKVVGVGEGRTKKEAEQMAAKSSLEN 233


>gi|116620923|ref|YP_823079.1| RNAse III [Candidatus Solibacter usitatus Ellin6076]
 gi|122255019|sp|Q027L3|RNC_SOLUE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|116224085|gb|ABJ82794.1| RNAse III [Candidatus Solibacter usitatus Ellin6076]
          Length = 271

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/231 (33%), Positives = 113/231 (48%), Gaps = 17/231 (7%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISH---------SYQESYERLEFLGDRILGLLISTLL 59
           LE ++ Y F +  LL +ALTHSS+++         S     E+LEFLGD +LG LI+  L
Sbjct: 8   LELKLDYRFNDPELLRRALTHSSLANENRPGAGVGSPLNDNEQLEFLGDSVLGFLIAEAL 67

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
              F    EG+LS     LVSA     VAR LDL S++ +             ++  D +
Sbjct: 68  VRRFPEYHEGDLSRLKAHLVSAAHLHGVARRLDLGSYLELGRSEEMSGGRTKKTLLVDGL 127

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRAL----KSGKFRRDA----KTELQEWAHAKFGV 171
           E+++AA+YLDGG++ A  FV  +          ++G   + A    K+ LQE A  +   
Sbjct: 128 EAIMAAIYLDGGVDAARAFVATHVLDAPFFGDEEAGTDIQPAITNFKSALQELAQTRRLP 187

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            P Y V    GP+H   FTV V +     AQ    +K+ A Q AA  + +R
Sbjct: 188 QPRYSVVRERGPEHSKTFTVEVRVGKEWTAQAEGRTKKIAAQRAARGLYER 238


>gi|315303706|ref|ZP_07874220.1| ribonuclease III [Listeria ivanovii FSL F6-596]
 gi|313627919|gb|EFR96538.1| ribonuclease III [Listeria ivanovii FSL F6-596]
          Length = 229

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 113/218 (51%), Gaps = 7/218 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++  L++ +G+ F +  LL++A THSS  + ++    +  ERLEFLGD +L L +S  LF
Sbjct: 3   QWEELQESVGFYFEDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N +    EG ++    ++V   +  + A  +  + ++R+     K       ++ ADV E
Sbjct: 63  NKYPDMAEGHMTKMRAAIVCEPSLVEFAEVVHFSKYVRLGKGEEKAGGRTRPALLADVFE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178
           S I ALYLD GI    TF+++    + + +G +    D KT+LQE       V  EY + 
Sbjct: 123 SFIGALYLDNGIAKVVTFLERIIFPK-IDAGAYLETVDYKTQLQEIVQRDRDVLIEYDIL 181

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             +GP H+  F   V ++G    +G   +K+ AEQ AA
Sbjct: 182 GETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAA 219


>gi|218248059|ref|YP_002373430.1| Ribonuclease III [Cyanothece sp. PCC 8801]
 gi|257060612|ref|YP_003138500.1| ribonuclease III [Cyanothece sp. PCC 8802]
 gi|218168537|gb|ACK67274.1| Ribonuclease III [Cyanothece sp. PCC 8801]
 gi|256590778|gb|ACV01665.1| ribonuclease III [Cyanothece sp. PCC 8802]
          Length = 225

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 106/219 (48%), Gaps = 15/219 (6%)

Query: 17  FANRSLLEKALTHSS-ISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           F N+ LL+ ALTH S I+  ++  E  ERLEFLGD IL  ++S  L+  +    E +L+ 
Sbjct: 7   FKNQELLDCALTHRSYINEHFEVTEHNERLEFLGDAILQFVVSEELYRRYPELTEAQLTR 66

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
             + LV     +Q AR LDL   + +     KD      ++ +D  E++I A +LD GIE
Sbjct: 67  LRSKLVDEPQLAQFARTLDLGQLMYLGQGAIKDGGRENPALLSDAFEAIIGAYFLDAGIE 126

Query: 134 VAGTFVDKYWKQ----------RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
               FV   +K+          R +       D K  LQ+WA  ++   PEY +  +SGP
Sbjct: 127 AVQYFVRSLFKEAIDNLVLPESRTVSPSII--DVKNRLQQWALEQYKQVPEYFLIEQSGP 184

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           DH   F   V I+G     G    K+ A + AA + L +
Sbjct: 185 DHAKEFVFGVRINGQVLGTGKGRRKQEATKAAAQDALDK 223


>gi|322376803|ref|ZP_08051296.1| ribonuclease III [Streptococcus sp. M334]
 gi|321282610|gb|EFX59617.1| ribonuclease III [Streptococcus sp. M334]
          Length = 232

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 110/222 (49%), Gaps = 7/222 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62
           + L+      FA+++LLE A TH+S ++ ++       ERLEFLGD +L LLIS  L+  
Sbjct: 6   TVLKNHFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLYKK 65

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +    EG+LS     +V  E+ +  AR+     FI++     K       +I  D  E+ 
Sbjct: 66  YPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILGDAFEAF 125

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180
           + AL LD  +     F+ +    + +++G+F    D KT LQE       V   Y+V   
Sbjct: 126 LGALLLDKDVAKVKKFIYQVMIPK-VEAGEFEMITDYKTHLQELLQVNGDVAIRYQVISE 184

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +GP HD  F V V + G +  QG   SK+ AEQ AA   +++
Sbjct: 185 TGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226


>gi|317484890|ref|ZP_07943780.1| ribonuclease III [Bilophila wadsworthia 3_1_6]
 gi|316923872|gb|EFV45068.1| ribonuclease III [Bilophila wadsworthia 3_1_6]
          Length = 233

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/216 (35%), Positives = 115/216 (53%), Gaps = 9/216 (4%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSIS--HSYQESY-ERLEFLGDRILGLLISTLLFNHFD 64
            L+ RIGY F + SLL  A+THSS +  HS   ++ ERLEFLGD +L + +S  LF  F 
Sbjct: 5   VLQDRIGYRFKDESLLVLAVTHSSWANEHSAGNAHNERLEFLGDAVLEIAVSAQLFARFP 64

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            A+EGEL+   +SLV+  T + +AR+L L   +R++            S+ +D +E++  
Sbjct: 65  DAREGELTRLRSSLVNEATLAVIARKLHLDDCLRLARGEENQGGRQRDSLLSDAMEAVFG 124

Query: 125 ALYLDGGIEVAGTFVDK----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            +++DGGIE A   V++     W + A K    R+D KT+LQE         P Y +   
Sbjct: 125 GVFVDGGIEKARAVVERLYTDLWPKNATKV--RRKDFKTKLQEATQRISKGLPVYALEDS 182

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            GP+H   F+V V++      +      + AEQ AA
Sbjct: 183 YGPEHAKIFSVRVDLPDGRQFRASGPGLKRAEQEAA 218


>gi|212639596|ref|YP_002316116.1| ribonuclease III [Anoxybacillus flavithermus WK1]
 gi|226735364|sp|B7GGE9|RNC_ANOFW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|212561076|gb|ACJ34131.1| DsRNA-specific ribonuclease [Anoxybacillus flavithermus WK1]
          Length = 238

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 107/225 (47%), Gaps = 7/225 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59
           +++   +++ G  F N  LL +A THSS  + ++    E  ERLEFLGD +L L +S  L
Sbjct: 8   VKFKQFQEQTGIFFRNEKLLIQAFTHSSYVNEHRKRLHEDNERLEFLGDAVLELTVSQYL 67

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F  F    EGEL+    ++V   +    A  L     + +             S+ ADV 
Sbjct: 68  FEQFPQMSEGELTKMRAAIVCEPSLVTFAHALSFGDLVLLGKGEELTGGRMRPSLLADVF 127

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177
           E+ I ALYLD GIE    F+ K    + ++ G F    D K++LQE+         EYK+
Sbjct: 128 EAFIGALYLDQGIEAVVQFLGKTIFPK-IREGAFSHVMDYKSQLQEFVQRDGSGVLEYKI 186

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
               GP H+  F   V ++G     G+  SK+ AEQ AA   L +
Sbjct: 187 LQERGPAHNKEFVSRVSLNGEELGVGVGRSKKEAEQRAAQMALAK 231


>gi|307708796|ref|ZP_07645258.1| ribonuclease III [Streptococcus mitis NCTC 12261]
 gi|307615162|gb|EFN94373.1| ribonuclease III [Streptococcus mitis NCTC 12261]
          Length = 232

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 110/222 (49%), Gaps = 7/222 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62
           + L+      FA+++LLE A TH+S ++ ++       ERLEFLGD +L LLIS  L+  
Sbjct: 6   TVLKNHFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLYKK 65

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +    EG+LS     +V  E+ +  AR+     FI++     K       +I  D  E+ 
Sbjct: 66  YPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILGDAFEAF 125

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180
           + AL LD  +     F+ +    + +++G+F    D KT LQE       V   Y+V   
Sbjct: 126 LGALLLDKDVAKVKEFIYQVMIPK-VEAGEFEMITDYKTHLQELLQVNGDVAIRYQVISE 184

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +GP HD  F V V + G +  QG   SK+ AEQ AA   +++
Sbjct: 185 TGPAHDKVFEVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226


>gi|258645853|ref|ZP_05733322.1| ribonuclease III [Dialister invisus DSM 15470]
 gi|260403226|gb|EEW96773.1| ribonuclease III [Dialister invisus DSM 15470]
          Length = 249

 Score =  103 bits (258), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 104/210 (49%), Gaps = 6/210 (2%)

Query: 19  NRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
           N  LL  ALTH+S ++ ++       ERLEFLGD +L L +   LF  F    EG+L+  
Sbjct: 28  NMELLNVALTHTSYANEHRNLKVHDNERLEFLGDAVLDLAVGDYLFRRFPEWPEGDLTRA 87

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
             S+V    C++ A    +  ++ +             SI  +  ES+I A+YLD G EV
Sbjct: 88  KASVVCKPACAECAANFHVGDYMLLGRGEEMSGGRTRVSILGNAFESVIGAVYLDNGYEV 147

Query: 135 AGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
           A  F+  + ++    +  G +  D K++LQE A     V   Y+V    GPDHD    + 
Sbjct: 148 AAKFILGHMQKFLDLVDQGIYDHDYKSDLQEIAQKNGDVDIRYEVVRDEGPDHDKTIWME 207

Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           + I+G A   G+  +K+ A Q AA E ++R
Sbjct: 208 LFINGKALGTGIGKNKKEAAQNAAKEAIER 237


>gi|312793340|ref|YP_004026263.1| ribonuclease iii [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180480|gb|ADQ40650.1| ribonuclease III [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 222

 Score =  103 bits (258), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/216 (32%), Positives = 117/216 (54%), Gaps = 9/216 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +E+ +GY F +++LL  ALTH S +HS +  YER EFLGD  L L +S  LF HF    E
Sbjct: 4   IERALGYTFKDKNLLRLALTHKSATHSNKNCYERFEFLGDAALELAVSKYLFVHFPELSE 63

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GEL+    ++V ++T S+VA +L+L + I      + +      SI ADV+E++  A+++
Sbjct: 64  GELTNIRAAVVCSQTLSKVAEKLNLKNHIIFGKREKMEKFHENKSILADVLEAIFGAIFI 123

Query: 129 DGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           + G ++    +    K   Q+A+ +GK   D KT+LQE    +       K+ ++     
Sbjct: 124 ESGFDIVEKIIVNLLKPYIQKAV-AGKLFYDYKTKLQEIVQRE----GNKKIVYKDCEII 178

Query: 186 DPR-FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           + + F   + I G   ++G   SK+ A+Q AA + L
Sbjct: 179 EKKYFKSELFIEGKKVSEGYGTSKKEAQQDAAYKFL 214


>gi|254302541|ref|ZP_04969899.1| ribonuclease III [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
 gi|148322733|gb|EDK87983.1| ribonuclease III [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
          Length = 234

 Score =  103 bits (258), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 123/226 (54%), Gaps = 13/226 (5%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           LE ++ Y F +R+LL+ AL H S+ +  +E    + ERLE LGD +L L+++  L+ ++ 
Sbjct: 7   LEHKLNYYFNDRNLLKNALLHKSLGNERKEYKNQNNERLELLGDAVLDLIVAEYLYKNYK 66

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS---FMTSIQADVVES 121
           +A EG ++     +VS    ++++R++ +  F+ +S   R +V S      SI AD  E+
Sbjct: 67  NASEGTIAKLKAMIVSEPILAKISRQIGVGKFLMLS---RGEVMSGGRNRESILADSFEA 123

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           ++ A+Y+D  +E A  F   + KQ    ++  +   D K+ LQE+   +F   P Y++  
Sbjct: 124 ILGAVYIDSNLEEARVFALSHIKQYIDHIEENEDILDFKSILQEYVQKEFRTVPTYELVA 183

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
             GPDH   F + V I G    + +  +K+ AEQ++A  +  + G+
Sbjct: 184 ERGPDHMKEFEIQV-IVGNYKEKAVARNKKKAEQLSAKALCIKLGV 228


>gi|329116187|ref|ZP_08244904.1| ribonuclease III [Streptococcus parauberis NCFD 2020]
 gi|326906592|gb|EGE53506.1| ribonuclease III [Streptococcus parauberis NCFD 2020]
          Length = 230

 Score =  103 bits (258), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/212 (33%), Positives = 112/212 (52%), Gaps = 7/212 (3%)

Query: 17  FANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           FA+R+LLE A TH+S ++ ++       ERLEFLGD +L L+IS  LF  + +  EG++S
Sbjct: 16  FADRNLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIISEYLFEKYPNKAEGDMS 75

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
            + + +V  E+ +  +R     ++I++     K       +I  D+ E+ + AL LD G+
Sbjct: 76  KQRSMIVREESLAGFSRFCTFDNYIKLGKGEEKSGGRNRDTILGDLFEAFLGALLLDKGV 135

Query: 133 EVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           E    F+ +    +  K G F +  D KT LQE   ++  +  +Y+V    GP HD  F 
Sbjct: 136 EKVRKFLYQVMIPQVEK-GTFEQVMDYKTNLQELLQSQGDIIIDYQVISEEGPAHDKVFE 194

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           V V  +    +QG   SK+ AEQ AA   L++
Sbjct: 195 VAVLSNEKTLSQGKGKSKKLAEQAAAKNALEQ 226


>gi|169833544|ref|YP_001694678.1| ribonuclease III [Streptococcus pneumoniae Hungary19A-6]
 gi|221231942|ref|YP_002511094.1| ribonuclease III [Streptococcus pneumoniae ATCC 700669]
 gi|307706718|ref|ZP_07643523.1| ribonuclease III [Streptococcus mitis SK321]
 gi|307709493|ref|ZP_07645950.1| ribonuclease III [Streptococcus mitis SK564]
 gi|238688328|sp|B1IC43|RNC_STRPI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807902|sp|B8ZJR8|RNC_STRPJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|168996046|gb|ACA36658.1| ribonuclease III [Streptococcus pneumoniae Hungary19A-6]
 gi|220674402|emb|CAR68952.1| ribonuclease III [Streptococcus pneumoniae ATCC 700669]
 gi|301794330|emb|CBW36755.1| ribonuclease III [Streptococcus pneumoniae INV104]
 gi|301800168|emb|CBW32773.1| ribonuclease III [Streptococcus pneumoniae OXC141]
 gi|307617803|gb|EFN96965.1| ribonuclease III [Streptococcus mitis SK321]
 gi|307619807|gb|EFN98926.1| ribonuclease III [Streptococcus mitis SK564]
 gi|332203096|gb|EGJ17164.1| ribonuclease III [Streptococcus pneumoniae GA47901]
          Length = 232

 Score =  103 bits (258), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 110/222 (49%), Gaps = 7/222 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62
           + L+      FA+++LLE A TH+S ++ ++       ERLEFLGD +L LLIS  L+  
Sbjct: 6   TVLKNHFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLYKK 65

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +    EG+LS     +V  E+ +  AR+     FI++     K       +I  D  E+ 
Sbjct: 66  YPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILGDAFEAF 125

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180
           + AL LD  +     F+ +    + +++G+F    D KT LQE       V   Y+V   
Sbjct: 126 LGALLLDKDVAKVKEFIYQVMIPK-VEAGEFEMITDYKTHLQELLQVNGDVAIRYQVISE 184

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +GP HD  F V V + G +  QG   SK+ AEQ AA   +++
Sbjct: 185 TGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226


>gi|294504509|ref|YP_003568571.1| ribonuclease III [Yersinia pestis Z176003]
 gi|169749969|gb|ACA67487.1| Ribonuclease III [Yersinia pseudotuberculosis YPIII]
 gi|186699329|gb|ACC89958.1| ribonuclease III [Yersinia pseudotuberculosis PB1/+]
 gi|262362499|gb|ACY59220.1| ribonuclease III [Yersinia pestis D106004]
 gi|262366496|gb|ACY63053.1| ribonuclease III [Yersinia pestis D182038]
 gi|294354968|gb|ADE65309.1| ribonuclease III [Yersinia pestis Z176003]
          Length = 204

 Score =  103 bits (258), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/201 (36%), Positives = 104/201 (51%), Gaps = 6/201 (2%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
           +ALTH S S  + E   RLEFLGD IL  +I+  L+  F    EG++S    +LV   T 
Sbjct: 3   QALTHRSASSKHNE---RLEFLGDSILSFVIANELYRRFPRVDEGDMSRMRATLVRGNTL 59

Query: 85  SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
           +++ARE DL   +R+     K       SI AD VE+LI  ++LD  I      + +++ 
Sbjct: 60  AEMAREFDLGECLRLGPGELKSGGFRRESILADTVEALIGGVFLDSDIHTIERLILEWYH 119

Query: 145 QR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APA 201
            R   +  G  ++D KT LQE+   +    P Y V    G  HD  FT+  ++SGL  P 
Sbjct: 120 SRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLNEPV 179

Query: 202 QGMDCSKRAAEQVAAAEVLKR 222
            G   S+R AEQ AA + LK+
Sbjct: 180 IGTGSSRRKAEQAAAEQALKQ 200


>gi|302878420|ref|YP_003846984.1| ribonuclease III [Gallionella capsiferriformans ES-2]
 gi|302581209|gb|ADL55220.1| ribonuclease III [Gallionella capsiferriformans ES-2]
          Length = 229

 Score =  103 bits (258), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/217 (35%), Positives = 112/217 (51%), Gaps = 12/217 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y+ L +++GY F    LL++ALTH S +  + E   RLEFLGD ILG +I+  L++    
Sbjct: 7   YTELCRQLGYVFIQPQLLQRALTHRSFAPDHNE---RLEFLGDSILGCVIAKHLYSQHPD 63

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS   ++LV   T    A++L+L + +++     K       SI AD VE+L  A
Sbjct: 64  LTEGDLSRLRSNLVKESTLVLFAQQLNLGAQLKLGEGELKSGGHKRPSILADAVEALFGA 123

Query: 126 LYLDGGI-----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +++DGG       V   FV  Y  +  +K+    +DAKT LQE+   +  + P Y V   
Sbjct: 124 IFIDGGYVAAEAAVLNLFV-PYLAKVDMKT--LGKDAKTLLQEYLQGRRQLLPVYSVVDT 180

Query: 181 SGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAA 216
            G  H+  F V   I  L    +G   S+R AEQ AA
Sbjct: 181 LGVAHEQLFQVECTIPSLKISTRGAGTSRRNAEQQAA 217


>gi|148652186|ref|YP_001279279.1| ribonuclease III [Psychrobacter sp. PRwf-1]
 gi|148571270|gb|ABQ93329.1| RNAse III [Psychrobacter sp. PRwf-1]
          Length = 259

 Score =  103 bits (258), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 113/226 (50%), Gaps = 19/226 (8%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           +L+K++GY+F + SL + ALTH S       +YERLEFLGD +LG++I   L+  +    
Sbjct: 28  SLQKQLGYSFNDTSLAKLALTHRSFDGKI--NYERLEFLGDALLGMIIGEALYYQYPKQD 85

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG L+    +LV  E+   VA++L+L+S++ +    RK       SI AD VESLI A+Y
Sbjct: 86  EGRLTRMRATLVRQESLVVVAQKLNLSSYLILGVGERKGGGRERASILADTVESLIGAIY 145

Query: 128 LDGG---------IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           LD           ++     +D    QR LK      DAK+ LQEW        P Y + 
Sbjct: 146 LDSQSVDTVKACVLDWFAELIDNVNDQRVLK------DAKSRLQEWLQGYKFELPNYDLL 199

Query: 179 FRSGPDHDPRFTV--VVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              G   +  F V   V++    P      S+R AEQ  A +++ +
Sbjct: 200 ETQGNAPNQVFIVRCEVDVPHTTPIVESGESRRIAEQKTAEKMINQ 245


>gi|281358070|ref|ZP_06244554.1| ribonuclease III [Victivallis vadensis ATCC BAA-548]
 gi|281315443|gb|EFA99472.1| ribonuclease III [Victivallis vadensis ATCC BAA-548]
          Length = 232

 Score =  103 bits (258), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 119/220 (54%), Gaps = 11/220 (5%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLISTLLFNHFDSA 66
           L+KR+G+A    + L +A+TH S +      Y  +RLEFLGD +L ++++  LF+ +  A
Sbjct: 8   LKKRLGFAGPWSNRLAEAVTHRSYAVENNLGYDNQRLEFLGDAVLEIILTEYLFHLYPDA 67

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGE++   ++LV     +++AR  +L  ++           +   S  AD+ E+++ A 
Sbjct: 68  AEGEMTKIRSALVREPALARLARRFELGEYLLTGRGEHDSGGADRDSTLADLFEAVLGAF 127

Query: 127 YLDGGIEVAGTFV-----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           YLD G +    FV     D+Y   R+L +     + K +LQE++   +G+TP+Y +   S
Sbjct: 128 YLDAGFDATRQFVTGLIRDEYPDPRSLLTSI---NPKGQLQEYSQRHWGLTPKYSILHTS 184

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           GP+H P + V V +S    A G   +++AAE  AA ++ +
Sbjct: 185 GPEHLPVYEVEVRLSRYN-AVGRAANRKAAEGDAARQLYR 223


>gi|328948083|ref|YP_004365420.1| ribonuclease 3 [Treponema succinifaciens DSM 2489]
 gi|328448407|gb|AEB14123.1| Ribonuclease 3 [Treponema succinifaciens DSM 2489]
          Length = 248

 Score =  103 bits (258), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/218 (35%), Positives = 115/218 (52%), Gaps = 11/218 (5%)

Query: 17  FANRSLLEKALTHSSISH---SYQE-SYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           F N SLL+ A  H S S+   SY+  + ERLEFLGD +LGL  +  L+N     KEG+L+
Sbjct: 32  FKNYSLLDLAFHHRSYSNENTSYKRYNNERLEFLGDSVLGLATAAFLYNDMSQNKEGDLA 91

Query: 73  VRFNSLVSAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131
               ++VS ++ + +A E + +  ++ +             +I AD VE++I ALY+D G
Sbjct: 92  KIKANVVSEQSLAPIAVEKMHIDKYLVLGKGEELSGGRTKKAILADAVEAVIGALYIDSG 151

Query: 132 IEVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
            E A   V +    + R ++S    +D KT LQE+   K    P Y +   +GPDHD  F
Sbjct: 152 YESAERLVLELIIPEIRKVQSDHGSKDYKTLLQEFYQKKTNACPSYSLVRTTGPDHDRIF 211

Query: 190 TVVVEISGL--APAQGMDCSKRAAEQVAAAEVLKREGI 225
            V V++  +   PA G +  K++AEQ AA    K  GI
Sbjct: 212 YVSVKLGDVVYGPASGKN--KKSAEQAAAGVACKALGI 247


>gi|149002616|ref|ZP_01827548.1| ribonuclease III [Streptococcus pneumoniae SP14-BS69]
 gi|168485011|ref|ZP_02709949.1| ribonuclease III [Streptococcus pneumoniae CDC1873-00]
 gi|168491168|ref|ZP_02715311.1| ribonuclease III [Streptococcus pneumoniae CDC0288-04]
 gi|225856914|ref|YP_002738425.1| ribonuclease III [Streptococcus pneumoniae P1031]
 gi|237649948|ref|ZP_04524200.1| ribonuclease III [Streptococcus pneumoniae CCRI 1974]
 gi|237822503|ref|ZP_04598348.1| ribonuclease III [Streptococcus pneumoniae CCRI 1974M2]
 gi|254807905|sp|C1CKY7|RNC_STRZP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|147759227|gb|EDK66220.1| ribonuclease III [Streptococcus pneumoniae SP14-BS69]
 gi|172041872|gb|EDT49918.1| ribonuclease III [Streptococcus pneumoniae CDC1873-00]
 gi|183574495|gb|EDT95023.1| ribonuclease III [Streptococcus pneumoniae CDC0288-04]
 gi|225724496|gb|ACO20348.1| ribonuclease III [Streptococcus pneumoniae P1031]
 gi|332200695|gb|EGJ14767.1| ribonuclease III [Streptococcus pneumoniae GA41317]
 gi|332201711|gb|EGJ15781.1| ribonuclease III [Streptococcus pneumoniae GA47368]
          Length = 232

 Score =  103 bits (258), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 110/222 (49%), Gaps = 7/222 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62
           + L+      FA+++LLE A TH+S ++ ++       ERLEFLGD +L LLIS  L+  
Sbjct: 6   TVLKNHFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLYKK 65

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +    EG+LS     +V  E+ +  AR+     FI++     K       +I  D  E+ 
Sbjct: 66  YPKKPEGDLSKLRAMIVREESLAGFARDCQFNQFIKLGKGEEKSGGRNRDTILGDAFEAF 125

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180
           + AL LD  +     F+ +    + +++G+F    D KT LQE       V   Y+V   
Sbjct: 126 LGALLLDKDVAKVKEFIYQVIIPK-VEAGEFEMITDYKTHLQELLQVNGDVAIRYQVISE 184

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +GP HD  F V V + G +  QG   SK+ AEQ AA   +++
Sbjct: 185 TGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226


>gi|93005197|ref|YP_579634.1| ribonuclease III [Psychrobacter cryohalolentis K5]
 gi|92392875|gb|ABE74150.1| RNAse III [Psychrobacter cryohalolentis K5]
          Length = 265

 Score =  103 bits (258), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 115/223 (51%), Gaps = 19/223 (8%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           R + L +++GY F + SL + ALTH S     +++YERLEFLGD +LG+++   L++ + 
Sbjct: 33  RLAVLTRKLGYVFNDLSLPKLALTHRSFDS--KKNYERLEFLGDALLGMIVGEALYHRYP 90

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EG L+    +LV  E+   +A+ L+L++ + +    RK       SI AD VESLI 
Sbjct: 91  TQNEGRLTRMRATLVRQESLVIIAQNLELSNQLILGVGERKGGGRNRASILADAVESLIG 150

Query: 125 ALYLDGG---------IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
           A+YLD           +   G  +D    Q+ALK      DAK+ LQEW  +K    P Y
Sbjct: 151 AIYLDSQDMNITRECVLSWYGDLIDNVNDQKALK------DAKSRLQEWLQSKQFDLPHY 204

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDC--SKRAAEQVAA 216
           ++    G      F V  +++ L      +   S+R AEQ AA
Sbjct: 205 ELMETRGNAPHQIFVVRCQVNILNCPDITESGESRRIAEQKAA 247


>gi|294054381|ref|YP_003548039.1| ribonuclease III [Coraliomargarita akajimensis DSM 45221]
 gi|293613714|gb|ADE53869.1| ribonuclease III [Coraliomargarita akajimensis DSM 45221]
          Length = 228

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/193 (35%), Positives = 101/193 (52%), Gaps = 5/193 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           +TL  +I ++F + SLLE AL H S+    +++ +RLEFLGD +L L+I+  L+ HF S 
Sbjct: 6   TTLADKIDHSFTDHSLLEMALKHPSLDIGVEDN-QRLEFLGDAVLDLVIAEYLYQHFPSE 64

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +EG L  R  SLVS +  +  A EL L + + VS   R         +  D +E+LI A+
Sbjct: 65  EEGRLDRRRASLVSGKALAPKALELGLNTVLVVSEAQRTHHPEPSKGMLEDALEALIGAI 124

Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRD-AKTELQEWAHA-KFGVTPEYKVTFRSG 182
           YLD G++ A   +   +     A+  G      AK  LQEW    + G  P+Y +    G
Sbjct: 125 YLDAGLDAARRSIRHIFAPELAAMAEGSPHDSRAKNRLQEWTQKHRQGAQPKYALIGSEG 184

Query: 183 PDHDPRFTVVVEI 195
           PDH   + V V +
Sbjct: 185 PDHARVYHVSVSL 197


>gi|72161055|ref|YP_288712.1| ribonuclease III [Thermobifida fusca YX]
 gi|90101652|sp|Q47S78|RNC_THEFY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|71914787|gb|AAZ54689.1| RNAse III [Thermobifida fusca YX]
          Length = 240

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/202 (35%), Positives = 105/202 (51%), Gaps = 11/202 (5%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           +L +ALTH S ++      + ERLEFLGD +LGL+++  L+       EG+L+    ++V
Sbjct: 25  ILTRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRTHPDLSEGQLAKLRAAVV 84

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
           +    + VAREL +  ++R+            +SI AD +E+LI A+YLD G++ A   V
Sbjct: 85  NMRALADVARELGIGRYVRLGRGEEATGGRDKSSILADTLEALIGAVYLDRGLDEASELV 144

Query: 140 DKYW-----KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
            + +     +   L +G    D KT LQE   A+    PEY V   SGPDH   F   V 
Sbjct: 145 HRLFDPLIARASGLGAGL---DWKTSLQELTAAELLGVPEY-VVEESGPDHQKTFRATVR 200

Query: 195 ISGLAPAQGMDCSKRAAEQVAA 216
           ++G     G   SK+ AEQ AA
Sbjct: 201 VAGQTYGSGEGRSKKEAEQQAA 222


>gi|194014593|ref|ZP_03053210.1| ribonuclease III [Bacillus pumilus ATCC 7061]
 gi|194013619|gb|EDW23184.1| ribonuclease III [Bacillus pumilus ATCC 7061]
          Length = 247

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 107/224 (47%), Gaps = 7/224 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++   ++RI   F N  LL +A THSS  + ++    E  ERLEFLGD +L L IS  LF
Sbjct: 17  QFREFQQRISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLF 76

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             + +  EG+L+    ++V   +   +A EL     + +             ++ ADV E
Sbjct: 77  AKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFE 136

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178
           + I ALYLD G+E    F++ Y   + +  G F    D K++LQE+         EY + 
Sbjct: 137 AFIGALYLDQGLEPVERFLEAYVYPK-INDGAFSHVMDFKSQLQEFVQRDGKGVLEYHIL 195

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              GP H+  F   V + G     G   SK+ AEQ AA E L +
Sbjct: 196 HEKGPAHNREFEANVSLRGEVLGIGNGRSKKEAEQHAAQEALAK 239


>gi|73541939|ref|YP_296459.1| ribonuclease III [Ralstonia eutropha JMP134]
 gi|90101640|sp|Q46Z18|RNC_RALEJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|72119352|gb|AAZ61615.1| RNAse III [Ralstonia eutropha JMP134]
          Length = 256

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/190 (34%), Positives = 99/190 (52%), Gaps = 5/190 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +    L++R+GY F+   LL++ALTH S  HS Q + ERLEFLGD +L   ++ +LF  F
Sbjct: 1   MNLDALQQRLGYRFSKPELLQQALTHRS--HSAQHN-ERLEFLGDSVLNCAVADMLFGMF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  +   ++A+ L L+  +R+     K       SI AD +E+++
Sbjct: 58  GKLDEGDLSRVRANLVKQQALYEIAQMLQLSEVLRLGEGELKSGGFRRPSILADALEAIV 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LD G E A T + K +      +      +DAKT LQE+        P+Y V    
Sbjct: 118 GAVFLDAGFEAARTLIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYNVIATH 177

Query: 182 GPDHDPRFTV 191
           G  H  +F V
Sbjct: 178 GAAHSQQFEV 187


>gi|15901109|ref|NP_345713.1| ribonuclease III [Streptococcus pneumoniae TIGR4]
 gi|111658429|ref|ZP_01409108.1| hypothetical protein SpneT_02000400 [Streptococcus pneumoniae
           TIGR4]
 gi|22654070|sp|Q97QG6|RNC_STRPN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|14972730|gb|AAK75353.1| ribonuclease III [Streptococcus pneumoniae TIGR4]
          Length = 232

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 109/222 (49%), Gaps = 7/222 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62
           + L+      FA++ LLE A TH+S ++ ++       ERLEFLGD +L LLIS  L+  
Sbjct: 6   TVLKNHFAIEFADKKLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLYKK 65

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +    EG+LS     +V  E+ +  AR+     FI++     K       +I  D  E+ 
Sbjct: 66  YPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILGDAFEAF 125

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180
           + AL LD  +     F+ +    + +++G+F    D KT LQE       V   Y+V   
Sbjct: 126 LGALLLDKDVAKVKEFIYQVMIPK-VEAGEFEMITDYKTHLQELLQVNGDVAIRYQVISE 184

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +GP HD  F V V + G +  QG   SK+ AEQ AA   +++
Sbjct: 185 TGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226


>gi|307704936|ref|ZP_07641827.1| ribonuclease III [Streptococcus mitis SK597]
 gi|307621550|gb|EFO00596.1| ribonuclease III [Streptococcus mitis SK597]
          Length = 232

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 110/222 (49%), Gaps = 7/222 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62
           + L+      FA+++LLE A TH+S ++ ++       ERLEFLGD +L LLIS  L+  
Sbjct: 6   TVLKNHFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLYKK 65

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +    EG+LS     +V  E+ +  AR+     FI++     K       +I  D  E+ 
Sbjct: 66  YPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILGDAFEAF 125

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180
           + AL LD  +     F+ +    + +++G+F    D KT LQE       V   Y+V   
Sbjct: 126 LGALLLDKDVVKVKEFIYQVMIPK-VEAGEFEMITDYKTHLQELLQVNGDVAIRYQVISE 184

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +GP HD  F V V + G +  QG   SK+ AEQ AA   +++
Sbjct: 185 TGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226


>gi|225621561|ref|YP_002722820.1| ribonuclease III [Brachyspira hyodysenteriae WA1]
 gi|225216382|gb|ACN85116.1| ribonuclease III [Brachyspira hyodysenteriae WA1]
          Length = 243

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/215 (32%), Positives = 115/215 (53%), Gaps = 6/215 (2%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQESY---ERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           + Y F N+  L +A+TH + ++  ++     +RLEFLGD +L L+IS  LF  + S+KEG
Sbjct: 14  LKYEFRNKDHLLEAITHRTYANESKKKMKYNQRLEFLGDSVLSLIISDYLFKKYSSSKEG 73

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
            LS   +SLVS ++ + +++EL L  F+ +          +  ++  D+ E+++ A+YLD
Sbjct: 74  LLSKVKSSLVSQKSLADISKELKLGDFLLLGHGEEASGGRYRDNMLEDLFEAIVGAIYLD 133

Query: 130 GGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
            GI  A  FV + +K+R   L    F +D KT  QE    K   +P YK ++    ++  
Sbjct: 134 SGITSASKFVMRAYKERLKNLDIENFDKDYKTIFQELIQKKHKTSPIYK-SYEYYDNNHE 192

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            F   V ++    A G+  SK+ AE  AA + L +
Sbjct: 193 MFKSEVYVNDKNFALGVGKSKKEAETNAAKKALDK 227


>gi|330860319|emb|CBX70633.1| ribonuclease 3 [Yersinia enterocolitica W22703]
          Length = 204

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/201 (36%), Positives = 103/201 (51%), Gaps = 6/201 (2%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
           +ALTH S S  + E   RLEFLGD IL  +I+  L+  F    EG++S    +LV   T 
Sbjct: 3   QALTHRSASSKHNE---RLEFLGDSILSFVIANELYRRFPRVDEGDMSRMRATLVRGNTL 59

Query: 85  SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
           +++ARE DL   +R+     K       SI AD VE+LI  ++LD  I      +  ++ 
Sbjct: 60  AEMAREFDLGECLRLGPGELKSGGFRRESILADTVEALIGGIFLDSDIHTIERLILAWYH 119

Query: 145 QR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APA 201
            R   +  G  ++D KT LQE+   +    P Y V    G  HD  FT+  ++SGL  P 
Sbjct: 120 SRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLNEPV 179

Query: 202 QGMDCSKRAAEQVAAAEVLKR 222
            G   S+R AEQ AA + LK+
Sbjct: 180 IGTGSSRRKAEQAAAEQALKQ 200


>gi|302872013|ref|YP_003840649.1| ribonuclease III [Caldicellulosiruptor obsidiansis OB47]
 gi|302574872|gb|ADL42663.1| ribonuclease III [Caldicellulosiruptor obsidiansis OB47]
          Length = 222

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/216 (33%), Positives = 119/216 (55%), Gaps = 9/216 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +EK +GY F +++LL+ ALTH S +HS +  YERLEFLGD  L L +S  L+ +F    E
Sbjct: 4   IEKALGYKFEDKNLLKLALTHKSATHSNKNCYERLEFLGDAALELAVSKYLYVYFPELSE 63

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GEL+    ++V ++T S+VA +L+L + I      + +      SI ADV+E+L  A+++
Sbjct: 64  GELTNIRAAVVCSQTLSKVAEKLNLKNHIIFGKREKMEKFHENKSILADVLEALFGAIFI 123

Query: 129 DGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           + G +     +    K   Q+A+ +GK   D KT+LQE    +     + K+ ++     
Sbjct: 124 ESGFDTVEKIIVNLLKPYIQKAV-AGKLFYDYKTKLQEIVQRE----GQKKIVYKDCEIL 178

Query: 186 DPR-FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           + + F   + I G   ++G   SK+ A+Q AA + L
Sbjct: 179 EKKYFKSELFIEGKKVSEGYGTSKKEAQQDAAYKFL 214


>gi|251797476|ref|YP_003012207.1| ribonuclease III [Paenibacillus sp. JDR-2]
 gi|247545102|gb|ACT02121.1| ribonuclease III [Paenibacillus sp. JDR-2]
          Length = 231

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 110/217 (50%), Gaps = 6/217 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNH 62
           + L+ R+   F    LL++A TH+S      H   E  ERLEFLGD +L LL+S  LF  
Sbjct: 7   NELQTRLQLRFKQLKLLKQAFTHTSYVNEHKHGTIEHNERLEFLGDAVLQLLVSEYLFAA 66

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           + +  EGEL+    S+V   + +Q A  L+L + I++     +       ++ AD+ E+ 
Sbjct: 67  YPNRPEGELTRMRASVVCEPSLAQFAERLELGAHIQLGRGEEQLGGRQRPALLADLFEAF 126

Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           + A++LD GIE    F++ +      +   G   +D K++LQE A  K     EY++   
Sbjct: 127 VGAIFLDAGIERTRAFLETHMFPYIESNDYGLLVKDFKSKLQERAQHKGLGAVEYRIMEE 186

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
            GP HD  F V V I  +    G   +K+ AEQ AAA
Sbjct: 187 RGPAHDREFVVEVCIGEIPYGNGSGRTKKEAEQRAAA 223


>gi|226943497|ref|YP_002798570.1| ribonuclease III [Azotobacter vinelandii DJ]
 gi|259491898|sp|C1DQS2|RNC_AZOVD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226718424|gb|ACO77595.1| ribonuclease III [Azotobacter vinelandii DJ]
          Length = 229

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/211 (36%), Positives = 104/211 (49%), Gaps = 8/211 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + LE+++G+ F N+ L+  ALTH S +     + ERLEFLGD IL  +    LF  F  A
Sbjct: 6   NRLERKLGHTFKNQDLMLLALTHRSFA---SRNNERLEFLGDAILNFVAGEALFERFPQA 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           KEG+LS     LV  ET + +AR  DL   +R+ S   K       SI AD +E+LI A+
Sbjct: 63  KEGQLSRLRARLVKGETLALLARGFDLGDHLRLGSGELKSGGFRRESILADALEALIGAI 122

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           YLD G+      V   W    L S       +D KT LQE+  ++    P Y+V    G 
Sbjct: 123 YLDAGLNTVRERV-LGWLAGELDSLTLVDTNKDPKTRLQEFLQSRACELPRYEVVDIQGE 181

Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSKRAAEQ 213
            H   F V   ++ L     G   S+R AEQ
Sbjct: 182 PHCRTFFVECRVALLNDKTYGQGASRRIAEQ 212


>gi|312795542|ref|YP_004028464.1| ribonuclease III [Burkholderia rhizoxinica HKI 454]
 gi|312167317|emb|CBW74320.1| Ribonuclease III (EC 3.1.26.3) [Burkholderia rhizoxinica HKI 454]
          Length = 408

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/199 (33%), Positives = 105/199 (52%), Gaps = 7/199 (3%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           ++  S LE R+ Y F N  LL +A+TH S S ++ E   RLEFLGD +L  +++ LLF  
Sbjct: 18  SMPLSPLESRLHYEFRNAELLRQAMTHRSHSATHNE---RLEFLGDSVLNCVVAALLFQR 74

Query: 63  FDSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           F    EG+LS VR N LV  ++  ++A+ L++A  +R+     +       SI AD  E+
Sbjct: 75  FGKLDEGDLSRVRAN-LVKQQSLYEIAQALNIAEALRLGEGELRSGGFRRPSILADTFEA 133

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           ++ A++LDGG + A T + + +      +      +DAKT LQE+        P Y V  
Sbjct: 134 VLGAIFLDGGFDAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPSYAVIA 193

Query: 180 RSGPDHDPRFTVVVEISGL 198
            +G  H+ +F V   +  L
Sbjct: 194 TTGAAHNQQFEVECTVPKL 212


>gi|325981700|ref|YP_004294102.1| ribonuclease III [Nitrosomonas sp. AL212]
 gi|325531219|gb|ADZ25940.1| ribonuclease III [Nitrosomonas sp. AL212]
          Length = 237

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/211 (36%), Positives = 106/211 (50%), Gaps = 10/211 (4%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
           +R+GY F    LL+ ALTH S  HS   + ERLEFLGD IL  +IS +++ HF    EG 
Sbjct: 19  ERLGYCFTQSHLLQTALTHRS--HSLPHN-ERLEFLGDAILNCVISGIIYKHFPELPEGH 75

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           LS    + V+ +  S +A  L +   +R+     K       SI AD  E+L+ A+YLD 
Sbjct: 76  LSRLRANFVNQKALSSIALNLQMDKLLRLGEGELKSGGCHRPSILADTFEALLGAIYLDS 135

Query: 131 GIEVAGTFVDKYW----KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
                 T V   +    +   L+S    +D KT LQE+  ++    PEY V   SG  H 
Sbjct: 136 DYAQVETVVMAIYLPLIQNIDLESPA--KDPKTLLQEFLQSQKLSLPEYLVVTTSGKAHK 193

Query: 187 PRFTVVVEISGL-APAQGMDCSKRAAEQVAA 216
            +F V   IS L     G   ++R+AEQVAA
Sbjct: 194 QKFKVECVISTLNIRTAGEGTNRRSAEQVAA 224


>gi|138894713|ref|YP_001125166.1| ribonuclease III [Geobacillus thermodenitrificans NG80-2]
 gi|196247668|ref|ZP_03146370.1| Ribonuclease III [Geobacillus sp. G11MC16]
 gi|189043318|sp|A4IM67|RNC_GEOTN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|134266226|gb|ABO66421.1| Ribonuclease III [Geobacillus thermodenitrificans NG80-2]
 gi|196212452|gb|EDY07209.1| Ribonuclease III [Geobacillus sp. G11MC16]
          Length = 246

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 107/223 (47%), Gaps = 7/223 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTLLF 60
           ++  L+K+IG  F N  LL +A THSS  +     + E  ERLEFLGD +L L +S  LF
Sbjct: 17  KFQELQKKIGITFQNEKLLIQAFTHSSYVNEHRRRFHEDNERLEFLGDAVLELTVSQYLF 76

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG+L+    ++V   +  + A  L     + +             ++ ADV E
Sbjct: 77  QKFPHMSEGQLTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFE 136

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178
           + I ALYLD G++V   F+ +    + +  G F    D K++LQE        T EY + 
Sbjct: 137 AFIGALYLDQGMDVVLRFLGQTMFPK-IDEGAFSHVMDFKSQLQELVQRDGSGTLEYAIL 195

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              GP H+  F   V ++G     G+  SK+ AEQ AA   L+
Sbjct: 196 EEKGPAHNKEFVARVALNGQELGVGVGRSKKEAEQHAAQMALE 238


>gi|71064909|ref|YP_263636.1| ribonuclease III [Psychrobacter arcticus 273-4]
 gi|90101639|sp|Q4FUV6|RNC_PSYA2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|71037894|gb|AAZ18202.1| RNAse III [Psychrobacter arcticus 273-4]
          Length = 265

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 115/223 (51%), Gaps = 19/223 (8%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           R + L +++GY F + SL + ALTH S     +++YERLEFLGD +LG+++   L++ + 
Sbjct: 33  RLAVLTRKLGYVFNDLSLAKLALTHRSFDS--KKNYERLEFLGDALLGMIVGEALYHRYP 90

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EG L+    +LV  E+   +A+ L+L++ + +    RK       SI AD VESLI 
Sbjct: 91  TQNEGRLTRMRATLVRQESLVIIAQNLELSNQLILGVGERKGGGRNRASILADAVESLIG 150

Query: 125 ALYLDGG---------IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
           A+YLD           +   G  +D    Q+ALK      DAK+ LQEW  +K    P Y
Sbjct: 151 AIYLDSQDMNITRECVLSWYGDLIDNVNDQKALK------DAKSRLQEWLQSKQFDLPHY 204

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDC--SKRAAEQVAA 216
           ++    G      F V  +++ +      +   S+R AEQ AA
Sbjct: 205 ELMETRGNAPHQLFVVRCQVNIINCPDITESGESRRIAEQKAA 247


>gi|319649604|ref|ZP_08003760.1| rnc protein [Bacillus sp. 2_A_57_CT2]
 gi|317398766|gb|EFV79448.1| rnc protein [Bacillus sp. 2_A_57_CT2]
          Length = 246

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 109/226 (48%), Gaps = 10/226 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++   +  IG  F N  LL++A THSS  + ++    E  ERLEFLGD +L L +S  L+
Sbjct: 18  QFKEFQTEIGIQFENEKLLKQAFTHSSYVNEHRRKPYEDNERLEFLGDAVLELTVSKFLY 77

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             +    EGEL+    ++V   +    A  L   S + +             ++ ADV E
Sbjct: 78  LKYPMMSEGELTKLRAAVVCEPSLVSFAHALSFGSLVLLGKGEEMTGGRTRPALLADVFE 137

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178
           + I ALYLD G++    F++K    + + SG F    D K++LQE        T EYK+ 
Sbjct: 138 AFIGALYLDKGLDTVVGFLEKVVFPK-IDSGAFSHVMDFKSQLQELVQRDGAGTIEYKIL 196

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA---EVLK 221
              GP H+  F   V ++G     G   SK+ AEQ AA    EVLK
Sbjct: 197 QEKGPAHNREFVSTVSLNGRELGTGTGRSKKEAEQHAAQMALEVLK 242


>gi|254490771|ref|ZP_05103954.1| ribonuclease III [Methylophaga thiooxidans DMS010]
 gi|224463943|gb|EEF80209.1| ribonuclease III [Methylophaga thiooxydans DMS010]
          Length = 227

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 112/225 (49%), Gaps = 10/225 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M   R   L K++   F    LL +ALTH S   +  ++ ERLE+LGD IL  +I+  LF
Sbjct: 1   MITQRQKALCKQLEITFKKTDLLLQALTHRS---ADPKNNERLEYLGDAILSFVIAEELF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N F   KEG+LS    SLV  ET +++AREL L   + +     K       SI AD VE
Sbjct: 58  NRFPQVKEGKLSRLRASLVKGETLAELARELKLGDVLILGPGELKSGGFRRESILADAVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +++ ALYLDGG+E     + + +++R   +   +  +D KT LQE   ++    P Y V 
Sbjct: 118 AILGALYLDGGLESVKALILRLYQERLDNIDVTETVKDPKTRLQELLQSRKQPLPIYSVK 177

Query: 179 FRSGPDHDPRFTVVVEISGL---APAQGMDCSKRAAEQVAAAEVL 220
                   P F    +++ L     AQG   S R AE+ AA   L
Sbjct: 178 EVKTDKKHPAFEASCQVTLLDKVVVAQG--SSHRKAEKKAAERAL 220


>gi|225571976|ref|ZP_03780840.1| hypothetical protein RUMHYD_00270 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040509|gb|EEG50755.1| hypothetical protein RUMHYD_00270 [Blautia hydrogenotrophica DSM
           10507]
          Length = 244

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/201 (34%), Positives = 106/201 (52%), Gaps = 7/201 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFD 64
           LEK +GY F + +LL++A+THSS S+          ERLEFLGD +L ++ S  L+  F 
Sbjct: 15  LEKELGYQFRDINLLKQAVTHSSYSNEKNMGKLGCNERLEFLGDAVLEVISSEFLYQKFP 74

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             +EGEL+ +  S+V   T +  ARE+ L +++ +             SI +D +E++I 
Sbjct: 75  ILQEGELTKKRASMVCEPTLALCAREIRLDNYLLLGHGEENTGGRKRDSIVSDALEAVIG 134

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A+YLDGG+  A  F+ K+     ++  +   D+KT LQE           Y++    GPD
Sbjct: 135 AIYLDGGLASAKEFILKHV-LNDMEHKQLFYDSKTILQEIVQEHGNNPVSYQLIREDGPD 193

Query: 185 HDPRFTVVVEISG--LAPAQG 203
           H+  FTV V +    L   QG
Sbjct: 194 HNKIFTVEVRVKQEVLGVGQG 214


>gi|206603444|gb|EDZ39924.1| Ribonuclease III [Leptospirillum sp. Group II '5-way CG']
          Length = 375

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 117/244 (47%), Gaps = 34/244 (13%)

Query: 13  IGYAFANRSLLEKALTHSSISH-----SYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           +G  F     +E+ALTH S SH     +   +YERLEFLGDR++GL++S  L N + SA 
Sbjct: 25  LGLPFKPTMRIEEALTHRSASHERGRKTPIPNYERLEFLGDRVIGLIVSEYLLNTWPSAS 84

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG++   F+ +VS +T + +AR +DL S++ +            +S+ AD  ESL AA+Y
Sbjct: 85  EGDIGQIFSGIVSTQTLASIARRMDLGSYMILGKGSHSSGDRENSSLLADTFESLAAAIY 144

Query: 128 LDGGIEVAGTFVDKYWKQ------RALKSGKFRRDA-----------------------K 158
           L+ G+E     +  ++ Q      + +++ +  RD+                       K
Sbjct: 145 LEYGLETCRQVLIPWFTQPLIEIVQKIENLREVRDSSSGPVSSVIAAQPAPPRAGSLNFK 204

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
             LQ+W  +K    P Y+V    GP H  RF + V + G    +    +KR A   AA  
Sbjct: 205 LLLQKWCQSKAEELPVYQVLEEIGPAHQRRFRLGVFLKGKQLGEAEGTTKRGASVHAAKN 264

Query: 219 VLKR 222
             +R
Sbjct: 265 AWER 268


>gi|28378329|ref|NP_785221.1| ribonuclease III [Lactobacillus plantarum WCFS1]
 gi|254556537|ref|YP_003062954.1| ribonuclease III [Lactobacillus plantarum JDM1]
 gi|300767266|ref|ZP_07077178.1| ribonuclease III [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308180480|ref|YP_003924608.1| ribonuclease III [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|38258332|sp|Q88WK0|RNC_LACPL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|28271164|emb|CAD64069.1| ribonuclease III [Lactobacillus plantarum WCFS1]
 gi|254045464|gb|ACT62257.1| ribonuclease III [Lactobacillus plantarum JDM1]
 gi|300495085|gb|EFK30241.1| ribonuclease III [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308045971|gb|ADN98514.1| ribonuclease III [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 231

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/216 (31%), Positives = 111/216 (51%), Gaps = 7/216 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNH 62
           + L++R G  F +  LL +A T +S  + +Q+     YER+EFLGD +L L++S  L+  
Sbjct: 7   AMLKERFGIVFNDPDLLAEAFTQASYVNEHQDQQLKYYERVEFLGDAVLELVVSEYLYKR 66

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +    +G+L+    ++V  E+ +  ARE D   +IR+    +K       S+  D+ ES 
Sbjct: 67  YKDMPQGKLTRLRAAMVCEESFASFARECDFPQYIRLGKGEQKAHAWERDSLLCDIFESF 126

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180
           + ALYLD G E    FV +    + L  G+F    D KT LQE+      V  +Y++  +
Sbjct: 127 VGALYLDQGREPVLKFVHQVIFPK-LDEGRFDGVFDYKTTLQEYLQRDGDVAIDYQLIEQ 185

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            GP ++  + + V   G    +G   SK+ AEQ AA
Sbjct: 186 DGPANERSYEIAVLADGQKIGEGWGHSKKEAEQSAA 221


>gi|94989948|ref|YP_598048.1| ribonuclease III [Streptococcus pyogenes MGAS10270]
 gi|189043365|sp|Q1JI19|RNC_STRPD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|94543456|gb|ABF33504.1| Ribonuclease III [Streptococcus pyogenes MGAS10270]
          Length = 230

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/210 (33%), Positives = 110/210 (52%), Gaps = 7/210 (3%)

Query: 17  FANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           F + +LLE A TH+S ++ ++       ERLEFLGD +L L+IS  LF  +    EG++S
Sbjct: 16  FNDLTLLETAFTHTSYANEHRLLNVSHNERLEFLGDAVLQLIISEYLFAKYPKKTEGDMS 75

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
              + +V  E+ +  +R     ++I++     K       +I  D+ E+ + AL LD GI
Sbjct: 76  KLRSMIVREESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDTILGDLFEAFLGALLLDKGI 135

Query: 133 EVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           +    F+ +    +  K G F R  D KT LQE+  AK  V  +Y+V    GP H  +F 
Sbjct: 136 DAVRRFLKQVMIPQVEK-GNFERVKDYKTCLQEFLQAKGDVVIDYQVISEKGPAHAKQFE 194

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           V + ++G   ++G+  SK+ AEQ AA   L
Sbjct: 195 VSIVVNGAVLSKGLGKSKKLAEQDAAKNAL 224


>gi|94970880|ref|YP_592928.1| ribonuclease III [Candidatus Koribacter versatilis Ellin345]
 gi|94552930|gb|ABF42854.1| RNAse III [Candidatus Koribacter versatilis Ellin345]
          Length = 258

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/205 (35%), Positives = 101/205 (49%), Gaps = 16/205 (7%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSIS---------HSYQESYERLEFLGDRILGLLIST 57
           + LEK + + F  + LL +ALTHSS +         +S     E+LEF+GD +L  + S 
Sbjct: 8   AALEKALDHKFEEQELLVRALTHSSYAREQRDHIHDNSVPNDNEQLEFIGDSVLAFVTSQ 67

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            L   F   +EGELS     LVSA    Q AR LDL  F+R+     +      ++I  D
Sbjct: 68  ELVKKFPHFQEGELSKLRAYLVSARHLIQTARNLDLGKFLRLGRGEERSGGRSKSAILVD 127

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-------DAKTELQEWAHAKFG 170
            +E++IAA+YLDGG+ VA  F+ +   +  LK  +          D K+ LQE AHA   
Sbjct: 128 ALEAVIAAIYLDGGLRVAQKFILREIVRPELKRMETEHGSALPVTDYKSALQEQAHAAGR 187

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEI 195
               Y V    GP+H   FTV   I
Sbjct: 188 KRIVYAVVKEEGPEHRKTFTVEARI 212


>gi|325849059|ref|ZP_08170551.1| ribonuclease III [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325480304|gb|EGC83367.1| ribonuclease III [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 238

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 121/222 (54%), Gaps = 17/222 (7%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           IGY F N++L++ ALTHSS  +  ++    S ERLEFLGD IL L++S  L+ +  S  E
Sbjct: 18  IGYIFKNKNLIDVALTHSSYINESKDKNRSSNERLEFLGDSILDLVVSEELYKNHKSYPE 77

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFI-----RVSSDLRKDVCSFMTSIQADVVESLI 123
           G+L+   + +V   + S+ + + +L+S++      +S + R+       S++AD  E+  
Sbjct: 78  GKLTKIRSRIVCTSSFSKASEKFNLSSYLLFGKGEISHNGREK-----KSVKADTFEAFC 132

Query: 124 AALYLDGGIEVAGTF-VDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           AA+YLD G      F ++ Y++  +  L++     D KT+LQE+ +       +YK+   
Sbjct: 133 AAIYLDAGYVFLKNFLMENYYQTVKELLENDLLFIDYKTKLQEYFNKTNRTILKYKLAKE 192

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            GP+H+  F + V       + G   +K+ AEQ+AA +  K+
Sbjct: 193 EGPEHNKTFYMDVYAKNKKLSTGKGKNKKEAEQMAAMKAYKK 234


>gi|299067031|emb|CBJ38226.1| Ribonuclease III (RNase III) [Ralstonia solanacearum CMR15]
          Length = 256

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/211 (34%), Positives = 107/211 (50%), Gaps = 6/211 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L++R+ Y F+   LL++ALTH S +  + E   RLEFLGD IL   ++ +L+  F    E
Sbjct: 6   LQQRLDYRFSKPELLQQALTHRSHNAMHNE---RLEFLGDSILNCAVADMLYGMFGKLDE 62

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    +LV  +   ++A+ L L   +R+     K       SI AD +E++  A++L
Sbjct: 63  GDLSRVRANLVKQQALYEIAQMLLLPDELRLGEGELKSGGFRRPSILADALEAIFGAVFL 122

Query: 129 DGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           DGG + A T + K +      +      +DAKT LQE+        P+Y V    G  H+
Sbjct: 123 DGGFDAARTLIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYAVVATHGAAHN 182

Query: 187 PRFTVVVEISGLA-PAQGMDCSKRAAEQVAA 216
            +F V   I  L     G   S+RAAEQ AA
Sbjct: 183 QQFEVECTIPKLEIRVSGSGASRRAAEQSAA 213


>gi|317059911|ref|ZP_07924396.1| ribonuclease 3 [Fusobacterium sp. D12]
 gi|313685587|gb|EFS22422.1| ribonuclease 3 [Fusobacterium sp. D12]
          Length = 235

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 114/224 (50%), Gaps = 9/224 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           LE  I Y F +++LL+ AL H S  + ++     + ERLE LGD +LGL+++  L+  + 
Sbjct: 11  LEHNINYYFNDKNLLKNALIHRSFGNEHRTYKNINNERLELLGDAVLGLVVAEYLYQKYP 70

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             KEG L+   +  VS    S V+R+L +  ++ +S            SI  D  E+++ 
Sbjct: 71  KEKEGVLAKIKSMAVSEPVLSGVSRKLHIGDYLLLSKGEIVTGGRDRNSILGDAFEAILG 130

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YLD G   A  +V  + K+       F    D KT LQE    KF   P+Y +    G
Sbjct: 131 AIYLDSGFFAAKEYVLFHLKEIIDHIDDFEEILDFKTILQEHCQKKFKEIPKYTLLREEG 190

Query: 183 PDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           PDH   F + V+I   +A A+G   +K+ AEQ AA ++ K  G+
Sbjct: 191 PDHRKLFEMQVQIQDKVARAKG--NNKKIAEQKAAKKLCKEMGV 232


>gi|270290359|ref|ZP_06196584.1| ribonuclease III [Pediococcus acidilactici 7_4]
 gi|270281140|gb|EFA26973.1| ribonuclease III [Pediococcus acidilactici 7_4]
          Length = 232

 Score =  102 bits (255), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/212 (33%), Positives = 109/212 (51%), Gaps = 7/212 (3%)

Query: 17  FANRSLLEKALTHSSI--SHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           F    LL++A T +S    H +Q  + YER+EFLGD +L L++S  L+  +    +G+L+
Sbjct: 17  FTKHELLDEAFTQASYVNEHPHQGLKFYERIEFLGDAVLQLVVSEYLYKRYPEMPQGKLT 76

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
               ++V   + S  A+E     +IR+     K       S+  D+ ES I ALYLD G 
Sbjct: 77  RLRAAMVCEASFSDFAKECHFDRYIRLGKGEEKSGARQRPSLLCDIFESFIGALYLDQGR 136

Query: 133 EVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           +    FV +    + L  G+F    D K+ELQE       V   Y++   +GPD+D  FT
Sbjct: 137 QAVEKFVRQVIFPK-LDEGRFDHIIDHKSELQELLQRNGEVEINYELISETGPDNDLVFT 195

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           V V  +    A+G   SK+AAEQ AA + L++
Sbjct: 196 VQVSAANQVLAKGSGHSKKAAEQNAANKALQK 227


>gi|297530632|ref|YP_003671907.1| ribonuclease III [Geobacillus sp. C56-T3]
 gi|297253884|gb|ADI27330.1| ribonuclease III [Geobacillus sp. C56-T3]
          Length = 246

 Score =  102 bits (255), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 108/223 (48%), Gaps = 7/223 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++  L+K+IG  F N  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF
Sbjct: 17  KFQELQKKIGITFRNEKLLIQAFTHSSYVNEHRRRLHEDNERLEFLGDAVLELTVSQYLF 76

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG+L+    ++V   +  + A  L     + +             ++ ADV E
Sbjct: 77  QKFPHMSEGQLTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFE 136

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178
           + I ALYLD G++    F++K    + +  G F    D K++LQE        T EY + 
Sbjct: 137 AFIGALYLDQGMDAVIRFLEKTMFPK-IDEGAFSHVMDFKSQLQELVQRDGSGTLEYAIL 195

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              GP H+  F   V ++G     G+  SK+ AEQ AA   L+
Sbjct: 196 EEKGPAHNKEFVARVALNGQELGIGVGRSKKEAEQHAAQMALE 238


>gi|91775216|ref|YP_544972.1| ribonuclease III [Methylobacillus flagellatus KT]
 gi|91775360|ref|YP_545116.1| ribonuclease III [Methylobacillus flagellatus KT]
 gi|91709203|gb|ABE49131.1| RNAse III [Methylobacillus flagellatus KT]
 gi|91709347|gb|ABE49275.1| RNAse III [Methylobacillus flagellatus KT]
          Length = 248

 Score =  102 bits (255), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/197 (34%), Positives = 101/197 (51%), Gaps = 5/197 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           + L  ++L +++ Y F ++ LL  ALTH S S S   + ERLEFLGD +L  L++  LF 
Sbjct: 21  AVLSQNSLVRQLAYEFKDKGLLTLALTHRSYSGS---NNERLEFLGDGVLNFLVAHQLFL 77

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F    EG+LS     LV  +T S++A EL +  F+R+     K       S+ AD +E+
Sbjct: 78  RFPKLPEGDLSRLRAQLVKEQTLSEIATELSVGEFLRLGEGELKSGGWRRPSVLADAMEA 137

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           +I A++LDGG   A   V + +  R   +      +DAK+ LQE+   +    PEY V  
Sbjct: 138 IIGAVFLDGGYPAAEALVKRLFLPRMEGIDPKAIGKDAKSLLQEFLQGRKIDLPEYNVLA 197

Query: 180 RSGPDHDPRFTVVVEIS 196
             G  H   F V   I+
Sbjct: 198 TEGEAHCQTFRVSCHIT 214


>gi|304384763|ref|ZP_07367109.1| ribonuclease III [Pediococcus acidilactici DSM 20284]
 gi|304328957|gb|EFL96177.1| ribonuclease III [Pediococcus acidilactici DSM 20284]
          Length = 235

 Score =  102 bits (255), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/212 (33%), Positives = 109/212 (51%), Gaps = 7/212 (3%)

Query: 17  FANRSLLEKALTHSSI--SHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           F    LL++A T +S    H +Q  + YER+EFLGD +L L++S  L+  +    +G+L+
Sbjct: 20  FTKHELLDEAFTQASYVNEHPHQGLKFYERIEFLGDAVLQLVVSEYLYKRYPEMPQGKLT 79

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
               ++V   + S  A+E     +IR+     K       S+  D+ ES I ALYLD G 
Sbjct: 80  RLRAAMVCEASFSDFAKECHFDRYIRLGKGEEKSGARQRPSLLCDIFESFIGALYLDQGR 139

Query: 133 EVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           +    FV +    + L  G+F    D K+ELQE       V   Y++   +GPD+D  FT
Sbjct: 140 QAVEKFVRQVIFPK-LDEGRFDHIIDHKSELQELLQRNGEVEINYELISETGPDNDLVFT 198

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           V V  +    A+G   SK+AAEQ AA + L++
Sbjct: 199 VQVSAANQVLAKGSGHSKKAAEQNAANKALQK 230


>gi|124516572|gb|EAY58080.1| ribonuclease III [Leptospirillum rubarum]
          Length = 377

 Score =  102 bits (255), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 116/244 (47%), Gaps = 34/244 (13%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQ-----ESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           +G  F     +E+ALTH S SH         +YERLEFLGDR++GL++S  L N + SA 
Sbjct: 25  LGLPFKPTMRIEEALTHRSASHERGRKTPIPNYERLEFLGDRVIGLIVSEYLLNTWPSAS 84

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG++   F+ +VS +T + +AR +DL S++ +            +S+ AD  ESL AA+Y
Sbjct: 85  EGDIGQIFSGIVSTQTLASIARRMDLGSYMILGKGSHSSGDRENSSLLADTFESLAAAIY 144

Query: 128 LDGGIEVAGTFVDKYWKQ------RALKSGKFRRDA-----------------------K 158
           L+ G+E     +  ++ Q      + +++ +  RD+                       K
Sbjct: 145 LEYGLETCRQVLIPWFTQPLIEIVQKIENLREIRDSSSGPGSSVIATQPAPPRAGSLNYK 204

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
             LQ+W  +K    P Y+V    GP H  RF + V + G    +    +KR A   AA  
Sbjct: 205 LLLQKWCQSKAEELPVYQVLEEIGPAHQRRFRLGVFLKGKQLGEAEGTTKRGASVHAAKN 264

Query: 219 VLKR 222
             +R
Sbjct: 265 AWER 268


>gi|261419391|ref|YP_003253073.1| ribonuclease III [Geobacillus sp. Y412MC61]
 gi|319766206|ref|YP_004131707.1| ribonuclease III [Geobacillus sp. Y412MC52]
 gi|261375848|gb|ACX78591.1| ribonuclease III [Geobacillus sp. Y412MC61]
 gi|317111072|gb|ADU93564.1| ribonuclease III [Geobacillus sp. Y412MC52]
          Length = 246

 Score =  102 bits (255), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 108/223 (48%), Gaps = 7/223 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++  L+K+IG  F N  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF
Sbjct: 17  KFQELQKKIGITFRNEKLLIQAFTHSSYVNEHRRRLHEDNERLEFLGDAVLELTVSQYLF 76

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG+L+    ++V   +  + A  L     + +             ++ ADV E
Sbjct: 77  QKFPHMSEGQLTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFE 136

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178
           + I ALYLD G++    F++K    + +  G F    D K++LQE        T EY + 
Sbjct: 137 AFIGALYLDQGMDAVIRFLEKTMFPK-IDEGAFSHVMDFKSQLQELVQRDGSGTLEYAIL 195

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              GP H+  F   V ++G     G+  SK+ AEQ AA   L+
Sbjct: 196 EEKGPAHNKEFVARVALNGQELGIGVGRSKKEAEQHAAQMALE 238


>gi|319758292|gb|ADV70234.1| dsRNA-specific ribonuclease [Streptococcus suis JS14]
          Length = 228

 Score =  102 bits (255), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 107/225 (47%), Gaps = 7/225 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           ++ L    G  F++ +LLE A TH+S ++ ++       ERLEFLGD +L L+IS  L+ 
Sbjct: 5   HAKLLDDFGIDFSDLNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLMISKYLYQ 64

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +    EGE+S   ++ V  E+ +  +R      F+R+     K       +I  D  E+
Sbjct: 65  KYPDRPEGEMSKLRSTFVREESLAGFSRACGFDRFLRLGKGEEKSGGRNRDTILGDAFEA 124

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179
            + AL LD G +    F+ K    R L+ G F R  D KT LQE       +   Y+V  
Sbjct: 125 FLGALLLDKGEKTVEEFIHKVMIPR-LEKGNFERVTDYKTALQEILQVNGEIAISYQVIA 183

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            SGP HD  F V V        +G   SK+ AEQ AA   ++  G
Sbjct: 184 ESGPAHDKTFEVEVSADQRVIGRGRGRSKKLAEQAAAKNAVEARG 228


>gi|257462242|ref|ZP_05626659.1| ribonuclease III [Fusobacterium sp. D12]
          Length = 232

 Score =  102 bits (255), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 114/224 (50%), Gaps = 9/224 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           LE  I Y F +++LL+ AL H S  + ++     + ERLE LGD +LGL+++  L+  + 
Sbjct: 8   LEHNINYYFNDKNLLKNALIHRSFGNEHRTYKNINNERLELLGDAVLGLVVAEYLYQKYP 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             KEG L+   +  VS    S V+R+L +  ++ +S            SI  D  E+++ 
Sbjct: 68  KEKEGVLAKIKSMAVSEPVLSGVSRKLHIGDYLLLSKGEIVTGGRDRNSILGDAFEAILG 127

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YLD G   A  +V  + K+       F    D KT LQE    KF   P+Y +    G
Sbjct: 128 AIYLDSGFFAAKEYVLFHLKEIIDHIDDFEEILDFKTILQEHCQKKFKEIPKYTLLREEG 187

Query: 183 PDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           PDH   F + V+I   +A A+G   +K+ AEQ AA ++ K  G+
Sbjct: 188 PDHRKLFEMQVQIQDKVARAKG--NNKKIAEQKAAKKLCKEMGV 229


>gi|146321055|ref|YP_001200766.1| dsRNA-specific ribonuclease [Streptococcus suis 98HAH33]
 gi|253751930|ref|YP_003025071.1| ribonuclease III [Streptococcus suis SC84]
 gi|253753753|ref|YP_003026894.1| ribonuclease III [Streptococcus suis P1/7]
 gi|253755369|ref|YP_003028509.1| ribonuclease III [Streptococcus suis BM407]
 gi|145691861|gb|ABP92366.1| dsRNA-specific ribonuclease [Streptococcus suis 98HAH33]
 gi|251816219|emb|CAZ51846.1| ribonuclease III [Streptococcus suis SC84]
 gi|251817833|emb|CAZ55586.1| ribonuclease III [Streptococcus suis BM407]
 gi|251819999|emb|CAR46159.1| ribonuclease III [Streptococcus suis P1/7]
 gi|292558506|gb|ADE31507.1| Ribonuclease III [Streptococcus suis GZ1]
          Length = 228

 Score =  102 bits (255), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 104/217 (47%), Gaps = 7/217 (3%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           G  F++ +LLE A TH+S ++ ++       ERLEFLGD +L L+IS  L+  +    EG
Sbjct: 13  GIDFSDLNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLMISKYLYQKYPDRPEG 72

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           E+S   ++ V  E+ +  +R      F+R+     K       +I  D  E+ + AL LD
Sbjct: 73  EMSKLRSTFVREESLAGFSRACGFDRFLRLGKGEEKSGGRNRDTILGDAFEAFLGALLLD 132

Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
            G +    F+ K    R L+ G F R  D KT LQE       +   Y+V   SGP HD 
Sbjct: 133 KGEKTVEEFIHKVMIPR-LEKGNFERVTDYKTALQEILQVNGEIAISYQVIAESGPAHDK 191

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            F V V        +G   SK+ AEQ AA   ++  G
Sbjct: 192 TFEVEVSADQRVIGRGRGRSKKLAEQAAAKNAVEARG 228


>gi|116333590|ref|YP_795117.1| dsRNA-specific ribonuclease [Lactobacillus brevis ATCC 367]
 gi|116098937|gb|ABJ64086.1| dsRNA-specific ribonuclease [Lactobacillus brevis ATCC 367]
          Length = 229

 Score =  102 bits (255), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 112/219 (51%), Gaps = 7/219 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSI--SHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
           L+ R    F ++SLL++A T +S    H +Q  + YER+EFLGD ++ L++S  +F  + 
Sbjct: 9   LKDRFDIHFKDQSLLDEAFTQASYVNEHPHQGLKFYERIEFLGDAVMQLVVSNYIFRRYP 68

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  +G L+    ++V+ ++ +  ARE     +IR+     K       S+  D+ ES I 
Sbjct: 69  AMPQGRLTRLRAAMVNEQSFASFARECHFDQYIRLGRGEEKAQARQRDSLLCDIFESFIG 128

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182
           ALY+D G++    FV      + L  G+F    D KTELQE       V  +Y++    G
Sbjct: 129 ALYMDQGLDKVVEFVTTVVFPK-LDEGRFDEFFDHKTELQELVQKNGPVDIDYRLLDEEG 187

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           PD+D  F V V +      +G   SK+ AEQ AA   L+
Sbjct: 188 PDNDRAFKVAVYVDDKLLGEGHGHSKKHAEQNAARHALE 226


>gi|170725604|ref|YP_001759630.1| ribonuclease III [Shewanella woodyi ATCC 51908]
 gi|238688672|sp|B1KI57|RNC_SHEWM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|169810951|gb|ACA85535.1| Ribonuclease III [Shewanella woodyi ATCC 51908]
          Length = 225

 Score =  102 bits (255), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/203 (34%), Positives = 105/203 (51%), Gaps = 5/203 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L + +GY F+  +LL+ ALTH S +  + E   RLEFLGD IL ++IS  L++ F  A E
Sbjct: 10  LCRTLGYDFSELALLDHALTHRSAASKHNE---RLEFLGDSILSIIISDALYHQFPKATE 66

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    +LV  +  +++  E  L  ++++     K       SI AD VE++I A+YL
Sbjct: 67  GDLSRMRATLVCGKMLAEIGFEFKLGDYLKLGPGELKSGGFRRESIIADAVEAIIGAVYL 126

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           D  +EV  + V  ++K R        ++D KT LQE         P YKVT   G  H  
Sbjct: 127 DSDLEVTRSLVLGWYKTRLETIQPINQKDPKTLLQELLQGYKKPLPVYKVTDIRGEAHAQ 186

Query: 188 RFTVVVEISGL-APAQGMDCSKR 209
            FT+   +  L  P  G+  S+R
Sbjct: 187 TFTIECYVEELRKPVVGVASSRR 209


>gi|294784571|ref|ZP_06749860.1| ribonuclease III [Fusobacterium sp. 3_1_27]
 gi|294487787|gb|EFG35146.1| ribonuclease III [Fusobacterium sp. 3_1_27]
          Length = 234

 Score =  102 bits (255), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 123/226 (54%), Gaps = 13/226 (5%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           LE ++ Y F +R+LL+ AL H S+ +  +E    + ERLE LGD +L L+++  L+ ++ 
Sbjct: 7   LEHKLNYYFNDRNLLKNALLHKSLGNERKEYKNQNNERLELLGDAVLDLIVAEYLYKNYK 66

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS---FMTSIQADVVES 121
           +A EG ++     +VS    ++++R++ +  F+ +S   R +V S      SI AD  E+
Sbjct: 67  NASEGTIAKLKAMIVSEPILAKISRQIGVGKFLMLS---RGEVMSGGRNRESILADSFEA 123

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           ++ A+Y+D  ++ A  F   + KQ    ++  +   D K+ LQE+   +F   P Y++  
Sbjct: 124 ILGAVYMDSNLDDARNFTLSHIKQYIDHIEENEDILDFKSILQEYVQKEFRTVPTYELIA 183

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
             GPDH   F + V I G    + +  +K+ AEQ++A  +  + G+
Sbjct: 184 ERGPDHMKEFEIQV-IVGNYKEKAVARNKKKAEQLSAKALCIKLGV 228


>gi|46579851|ref|YP_010659.1| ribonuclease III [Desulfovibrio vulgaris str. Hildenborough]
 gi|81404810|sp|Q72C44|RNC_DESVH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|46449267|gb|AAS95918.1| ribonuclease III [Desulfovibrio vulgaris str. Hildenborough]
          Length = 253

 Score =  102 bits (255), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/215 (35%), Positives = 111/215 (51%), Gaps = 7/215 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65
           L+K IG+ F +  LL  A+THSS ++      E  ERLEFLGD +L L +S  LF  F S
Sbjct: 32  LQKTIGHRFGDMELLLTAMTHSSWANEQAVPVEHNERLEFLGDAVLELCVSEELFRRFPS 91

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A+EG+L+   + LVS  +   VAREL L   +R+             S+ +D +E+++ A
Sbjct: 92  AREGDLTRMRSRLVSKPSLEGVARELRLDMSLRLGKGEESQGGRERGSLLSDALEAMLGA 151

Query: 126 LYLDGGIEVAGTFVDKYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           ++LD G   A   V +        AL   +  +D K++LQE     F   P Y +   SG
Sbjct: 152 VFLDAGYIAAKGVVMRILGPHFPEALVPVR-TKDYKSQLQELTQKLFRDRPVYTLLGSSG 210

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           P+HD +F V V +      +    S + AEQ+AAA
Sbjct: 211 PEHDKQFDVRVVLPDGTVFEATGPSMKRAEQMAAA 245


>gi|15903170|ref|NP_358720.1| ribonuclease III [Streptococcus pneumoniae R6]
 gi|116517072|ref|YP_816576.1| ribonuclease III [Streptococcus pneumoniae D39]
 gi|148989271|ref|ZP_01820651.1| ribonuclease III [Streptococcus pneumoniae SP6-BS73]
 gi|148998680|ref|ZP_01826119.1| ribonuclease III [Streptococcus pneumoniae SP11-BS70]
 gi|168575703|ref|ZP_02721618.1| ribonuclease III [Streptococcus pneumoniae MLV-016]
 gi|194398097|ref|YP_002037848.1| ribonuclease III [Streptococcus pneumoniae G54]
 gi|307067896|ref|YP_003876862.1| dsRNA-specific ribonuclease [Streptococcus pneumoniae AP200]
 gi|73917586|sp|Q8DPJ8|RNC_STRR6 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|122278538|sp|Q04K72|RNC_STRP2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226741378|sp|B5E4Y2|RNC_STRP4 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|15458754|gb|AAK99930.1| Ribonuclease III [Streptococcus pneumoniae R6]
 gi|116077648|gb|ABJ55368.1| ribonuclease III [Streptococcus pneumoniae D39]
 gi|147755517|gb|EDK62565.1| ribonuclease III [Streptococcus pneumoniae SP11-BS70]
 gi|147925249|gb|EDK76328.1| ribonuclease III [Streptococcus pneumoniae SP6-BS73]
 gi|183578209|gb|EDT98737.1| ribonuclease III [Streptococcus pneumoniae MLV-016]
 gi|194357764|gb|ACF56212.1| ribonuclease III [Streptococcus pneumoniae G54]
 gi|306409433|gb|ADM84860.1| dsRNA-specific ribonuclease [Streptococcus pneumoniae AP200]
          Length = 232

 Score =  102 bits (255), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 109/222 (49%), Gaps = 7/222 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62
           + L+      FA++ LLE A TH+S ++ ++       ERLEFLGD +L LLIS  L+  
Sbjct: 6   TVLKNHFEIEFADKKLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLYKK 65

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +    EG+LS     +V  E+ +  AR+     FI++     K       +I  D  E+ 
Sbjct: 66  YPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILGDAFEAF 125

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180
           + AL LD  +     F+ +    + +++G+F    D KT LQE       V   Y+V   
Sbjct: 126 LGALLLDKDVAKVKEFIYQVMIPK-VEAGEFEMITDYKTHLQELLQVNGDVAIRYQVISE 184

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +GP HD  F V V + G +  QG   SK+ AEQ AA   +++
Sbjct: 185 TGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226


>gi|312135000|ref|YP_004002338.1| ribonuclease iii [Caldicellulosiruptor owensensis OL]
 gi|311775051|gb|ADQ04538.1| ribonuclease III [Caldicellulosiruptor owensensis OL]
          Length = 222

 Score =  102 bits (255), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/216 (33%), Positives = 118/216 (54%), Gaps = 9/216 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +EK +GY F +++LL  ALTH S +HS +  YERLEFLGD  L L +S  L+ +F    E
Sbjct: 4   IEKALGYKFEDKNLLRLALTHKSATHSNKNCYERLEFLGDAALELAVSKYLYVYFPELSE 63

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GEL+    ++V ++T S+VA +L+L + I      + +      SI ADV+E+L  A+++
Sbjct: 64  GELTNIRAAVVCSQTLSKVAEKLNLKNHIIFGKREKMEKFYENKSILADVLEALFGAIFI 123

Query: 129 DGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           + G +     +    K   Q+A+ +GK   D KT+LQE    +     + K+ ++     
Sbjct: 124 ESGFDTVEKIIVNLLKPYIQKAV-AGKLFYDYKTKLQEIVQRE----GQKKIVYKDCEIL 178

Query: 186 DPR-FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           + + F   + I G   ++G   SK+ A+Q AA + L
Sbjct: 179 EKKYFKSELFIEGKKVSEGYGTSKKEAQQDAAYKFL 214


>gi|332074858|gb|EGI85330.1| ribonuclease III [Streptococcus pneumoniae GA41301]
          Length = 232

 Score =  102 bits (254), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 109/222 (49%), Gaps = 7/222 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62
           + L+      F +++LLE A TH+S ++ ++       ERLEFLGD +L LLIS  L+  
Sbjct: 6   TVLKNHFAIEFTDKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLYKK 65

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +    EG+LS     +V  E+ +  AR+     FI++     K       +I  D  E+ 
Sbjct: 66  YPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILGDAFEAF 125

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180
           + AL LD  +     F+ +    + +++G+F    D KT LQE       V   Y+V   
Sbjct: 126 LGALLLDKDVAKVKEFIYQVMIPK-VEAGEFEMITDYKTHLQELLQVNGDVVIRYQVISE 184

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +GP HD  F V V + G +  QG   SK+ AEQ AA   +++
Sbjct: 185 TGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226


>gi|258405510|ref|YP_003198252.1| ribonuclease III [Desulfohalobium retbaense DSM 5692]
 gi|257797737|gb|ACV68674.1| ribonuclease III [Desulfohalobium retbaense DSM 5692]
          Length = 237

 Score =  102 bits (254), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 115/221 (52%), Gaps = 9/221 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDS 65
           +++R+ Y F ++ LL  ALTHSS ++ +   QE  ERLEFLGD +L L IS  L+  +  
Sbjct: 9   VQQRLQYTFRDQQLLLLALTHSSYANEHPHIQEHNERLEFLGDAVLELAISEELYLRYPE 68

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A EG L+   + LVS    + + R+L++A  + +             +I  DV+ES+  A
Sbjct: 69  APEGSLTSLRSKLVSEPALAALGRQLEIAPALFLGRGEESQGGRERDAILCDVMESIFGA 128

Query: 126 LYLDGGIEVAGT-----FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           ++LD   + A T     +VDK+    +L   +  RD K+ LQE     F   P Y +   
Sbjct: 129 IFLDSDYDRAKTCILELYVDKWPSAPSLGHERL-RDFKSRLQECTQQLFKDRPVYHLVDS 187

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +GP+H   + V V++   + A   D S + AEQ AA + L+
Sbjct: 188 TGPEHAKVYHVRVDLPNGSQASAADSSVKKAEQQAARKALE 228


>gi|116492609|ref|YP_804344.1| ribonuclease III [Pediococcus pentosaceus ATCC 25745]
 gi|122265927|sp|Q03FX0|RNC_PEDPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|116102759|gb|ABJ67902.1| RNAse III [Pediococcus pentosaceus ATCC 25745]
          Length = 232

 Score =  102 bits (254), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/211 (35%), Positives = 106/211 (50%), Gaps = 7/211 (3%)

Query: 17  FANRSLLEKALTHSSI--SHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           F N +LL++A T +S    H +QE   YER+EFLGD +L L++S  LF  +    +G+L+
Sbjct: 17  FNNHALLDEAFTQASYVNEHPHQELKFYERIEFLGDAVLQLIVSEYLFKRYPEMPQGKLT 76

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
               ++V   + S  A+E     +IR+     K      +S+  D+ ES I ALYLD G 
Sbjct: 77  RLRAAMVCEASFSDFAKECHFDQYIRLGKGEEKSGARQRSSLLCDIFESFIGALYLDQGR 136

Query: 133 EVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
                FV +      L  GKF    D K+ELQE       V  +Y++    GP++D  FT
Sbjct: 137 AAVERFV-RIVIFPKLDEGKFDHIIDHKSELQELLQKNGDVEIDYELVSEEGPENDLIFT 195

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           V V       A G   SK+ AEQ AA + L+
Sbjct: 196 VSVTADHKKLATGTGHSKKVAEQNAANQALQ 226


>gi|332977456|gb|EGK14231.1| ribonuclease III [Psychrobacter sp. 1501(2011)]
          Length = 273

 Score =  102 bits (254), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 115/227 (50%), Gaps = 19/227 (8%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           ++L+K +GY F + SL + ALTH S       +YERLEFLGD +LG++I   L+  + + 
Sbjct: 41  ASLQKVLGYTFKDTSLAKLALTHRSFDGKI--NYERLEFLGDALLGMIIGEALYYQYPNQ 98

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG L+    +LV  E+   VA++L+L+S + +    RK       SI AD VESLI A+
Sbjct: 99  NEGRLTRMRATLVRQESLVIVAQKLNLSSHLILGVGERKGGGRERASILADTVESLIGAI 158

Query: 127 YLDG-GIEVA--------GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           YLD   ++V            ++    QR LK      DAK+ LQEW        P+Y++
Sbjct: 159 YLDSQSVDVVKACVLDWFAELINNVNDQRVLK------DAKSRLQEWLQGHKYELPKYEL 212

Query: 178 TFRSGPDHDPRFTV--VVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
               G   +  F V   VE+    P      S+R AEQ  A +++ +
Sbjct: 213 LETQGNAPNQIFIVRCEVEVPHSTPIIESGESRRIAEQKTAEKMINQ 259


>gi|294500965|ref|YP_003564665.1| ribonuclease III [Bacillus megaterium QM B1551]
 gi|294350902|gb|ADE71231.1| ribonuclease III [Bacillus megaterium QM B1551]
          Length = 248

 Score =  102 bits (254), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 106/217 (48%), Gaps = 7/217 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           ++  +K IG  F N +LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 20  FAEFQKEIGIQFTNEALLFQAFTHSSYVNEHRRRPYEDNERLEFLGDAVLELTVSQFLFK 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +    A E+D    + +             ++ ADV E+
Sbjct: 80  KYPTMSEGELTKLRAAVVCEPSLVTFANEMDFGKLVLLGKGEEMTGGRSRPALLADVFEA 139

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179
            I ALYLD G++   T + K    + +  G F    D K++LQE          EYKV  
Sbjct: 140 FIGALYLDQGLDTVVTILKKVVFPK-INEGAFSHVMDFKSQLQEVIQRDGVGQLEYKVLQ 198

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             GP H+  F   V ++G     G+  SK+ AEQ AA
Sbjct: 199 EKGPAHNREFLSRVSLNGEELGVGVGRSKKEAEQKAA 235


>gi|120602683|ref|YP_967083.1| ribonuclease III [Desulfovibrio vulgaris DP4]
 gi|120562912|gb|ABM28656.1| RNAse III [Desulfovibrio vulgaris DP4]
 gi|311234148|gb|ADP87002.1| ribonuclease III [Desulfovibrio vulgaris RCH1]
          Length = 228

 Score =  102 bits (254), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/215 (35%), Positives = 111/215 (51%), Gaps = 7/215 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65
           L+K IG+ F +  LL  A+THSS ++      E  ERLEFLGD +L L +S  LF  F S
Sbjct: 7   LQKTIGHRFGDMELLLTAMTHSSWANEQAVPVEHNERLEFLGDAVLELCVSEELFRRFPS 66

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A+EG+L+   + LVS  +   VAREL L   +R+             S+ +D +E+++ A
Sbjct: 67  AREGDLTRMRSRLVSKPSLEGVARELRLDMSLRLGKGEESQGGRERGSLLSDALEAMLGA 126

Query: 126 LYLDGGIEVAGTFVDKYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           ++LD G   A   V +        AL   +  +D K++LQE     F   P Y +   SG
Sbjct: 127 VFLDAGYIAAKGVVMRILGPHFPEALVPVR-TKDYKSQLQELTQKLFRDRPVYTLLGSSG 185

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           P+HD +F V V +      +    S + AEQ+AAA
Sbjct: 186 PEHDKQFDVRVVLPDGTVFEATGPSMKRAEQMAAA 220


>gi|297617466|ref|YP_003702625.1| ribonuclease III [Syntrophothermus lipocalidus DSM 12680]
 gi|297145303|gb|ADI02060.1| ribonuclease III [Syntrophothermus lipocalidus DSM 12680]
          Length = 232

 Score =  102 bits (254), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/205 (34%), Positives = 106/205 (51%), Gaps = 5/205 (2%)

Query: 21  SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            LL KALTH S S   +  E+ +RLEFLGD +L ++++  L+ +F    EG+L+     +
Sbjct: 23  GLLTKALTHPSYSQENEAVENNQRLEFLGDAVLNMVVAEYLYKNFPERPEGDLTRIRAKV 82

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138
           V  +   +VA  L +  ++ +             SI AD VE+++ A+YLD G+E A  F
Sbjct: 83  VCEKALVKVANTLKVGEYLYLGRGEELSGGRKRNSILADTVEAVVGAVYLDQGLEYARDF 142

Query: 139 VDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
           + +Y  Q    +  G F  D K++LQE   ++      Y +   SGP HD  F   V   
Sbjct: 143 ILRYLAQDIHEVAEGNFY-DYKSQLQELVQSRGKDNVTYAILEESGPAHDKTFIAGVFYR 201

Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLK 221
               AQG+  SK+ AEQ AA +VL+
Sbjct: 202 HKLLAQGVGKSKKEAEQKAAEKVLQ 226


>gi|166155383|ref|YP_001653638.1| ribonuclease III [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|238687467|sp|B0BBS8|RNC_CHLTB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|165931371|emb|CAP06943.1| ribonuclease III [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 231

 Score =  102 bits (254), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 108/215 (50%), Gaps = 3/215 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDS 65
           +E ++ + F++  LL  ALTHSS  + +   +E  ERLEFLGD +LGL+++  LF  F +
Sbjct: 10  IESKLNFTFSHPRLLITALTHSSYRNEFPSAEEDSERLEFLGDAVLGLVVTEHLFLLFPA 69

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG LS    +LV+AE C +  ++L L   + +    +        S  A++ E+++ A
Sbjct: 70  LNEGLLSTTRAALVNAEACFEYTQKLSLGEHLLIGRGEKMQSHRGKISAYANLFEAILGA 129

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           +YLDGG+  A   +      +         + K  LQ++      V P YK       D 
Sbjct: 130 VYLDGGLSPARQIIVPLLPDKESILPLMLVNPKNRLQQFTQQTLKVLPSYKALPWKSEDG 189

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            P + V V ++G    +G   SK+ AE++AA + L
Sbjct: 190 SPGYHVQVFVNGDLWGEGFAGSKKEAEKLAAKQAL 224


>gi|146329595|ref|YP_001209601.1| ribonuclease III [Dichelobacter nodosus VCS1703A]
 gi|146233065|gb|ABQ14043.1| ribonuclease III [Dichelobacter nodosus VCS1703A]
          Length = 233

 Score =  102 bits (254), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 114/219 (52%), Gaps = 7/219 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           + +  LE  +GY+F N  LL++ALTH S S  + E   R E+LGD +L  +IS  L+  +
Sbjct: 7   INWQLLEHALGYSFQNPELLQRALTHRSFSADHNE---RFEYLGDALLETVISVALYRRY 63

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             + EG+L+    ++V + + + +A++LDL  ++R+ S   K       SI AD VE++I
Sbjct: 64  PESPEGDLTRLRAAIVKSSSLAVIAKQLDLGRYLRLGSGELKSGGKRRESILADAVEAII 123

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+YLD             +     AL   +  +D KT LQE+  ++    P Y++    
Sbjct: 124 AAVYLDSDFYRCEQITLALFAPAIAALPDVEALKDPKTRLQEYLQSRDLPLPVYELVEEK 183

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           GP+H   FT+  +            S++ AEQ AAAE+L
Sbjct: 184 GPEHAKIFTISAKSERFC-TTATASSRKKAEQ-AAAELL 220


>gi|225860919|ref|YP_002742428.1| ribonuclease III [Streptococcus pneumoniae Taiwan19F-14]
 gi|298229966|ref|ZP_06963647.1| ribonuclease III [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298254343|ref|ZP_06977929.1| ribonuclease III [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298502755|ref|YP_003724695.1| ribonuclease III [Streptococcus pneumoniae TCH8431/19A]
 gi|254807906|sp|C1CR56|RNC_STRZT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|225726586|gb|ACO22437.1| ribonuclease III [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238350|gb|ADI69481.1| ribonuclease III [Streptococcus pneumoniae TCH8431/19A]
 gi|327389483|gb|EGE87828.1| ribonuclease III [Streptococcus pneumoniae GA04375]
          Length = 232

 Score =  102 bits (254), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 109/222 (49%), Gaps = 7/222 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62
           + L+      F +++LLE A TH+S ++ ++       ERLEFLGD +L LLIS  L+  
Sbjct: 6   TVLKNHFAIEFTDKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLYKK 65

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +    EG+LS     +V  E+ +  AR+     FI++     K       +I  D  E+ 
Sbjct: 66  YPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILGDAFEAF 125

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180
           + AL LD  +     F+ +    + +++G+F    D KT LQE       V   Y+V   
Sbjct: 126 LGALLLDKDVAKVKEFIYQVMIPK-VEAGEFEMITDYKTHLQELLQVNGDVAIRYQVISE 184

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +GP HD  F V V + G +  QG   SK+ AEQ AA   +++
Sbjct: 185 TGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226


>gi|289209108|ref|YP_003461174.1| ribonuclease III [Thioalkalivibrio sp. K90mix]
 gi|288944739|gb|ADC72438.1| ribonuclease III [Thioalkalivibrio sp. K90mix]
          Length = 236

 Score =  102 bits (254), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 67/181 (37%), Positives = 93/181 (51%), Gaps = 9/181 (4%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
           +ALTH S       + ERLEFLGD +LGL+I+  L+     A EG+L+    +LV+ E+ 
Sbjct: 31  QALTHRSAGG---RNNERLEFLGDAVLGLVIADALYEQLPDAPEGDLTRLRAALVNRESL 87

Query: 85  SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
           + +ARE  L   + +    RK       SI AD VE+LI   Y + G++ A  F    + 
Sbjct: 88  AALARESGLEGTLNLGQGERKSGGQRRDSILADAVEALIGVTYREAGMQAARDFTLALYA 147

Query: 145 QR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
           +R   L S +  +D KT LQE    +    P Y+V    GPDH  RFTV V +    P Q
Sbjct: 148 ERLGNLPSAESLKDPKTRLQEQLQGRNAELPVYEVLEVVGPDHQRRFTVSVHL----PTQ 203

Query: 203 G 203
           G
Sbjct: 204 G 204


>gi|172057915|ref|YP_001814375.1| ribonuclease III [Exiguobacterium sibiricum 255-15]
 gi|171990436|gb|ACB61358.1| Ribonuclease III [Exiguobacterium sibiricum 255-15]
          Length = 256

 Score =  102 bits (254), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 114/222 (51%), Gaps = 8/222 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTLLFN 61
           ++  L++R+   FAN  LL++A THSS  +  +ES    ERLEFLGD +L L +S  LF 
Sbjct: 30  KFGQLQERLDIHFANVELLKQAFTHSSFVNEQRESDGDNERLEFLGDAVLELTVSRYLFQ 89

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           H+    EGEL+    ++V   +  Q A   + +  I +             ++ ADV E+
Sbjct: 90  HYPERSEGELTKLRAAIVCEPSLVQFANHYEFSEMILLGKGEELTGGRNRPALLADVFEA 149

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTP-EYKVT 178
            I ALYLD GIE A  F+ +    + + SG F  + D K++LQE A  + G+   EY++ 
Sbjct: 150 FIGALYLDQGIEAAERFLAEAVFPK-VASGFFEEQTDFKSQLQE-AIQRVGLGQIEYEII 207

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
              GP H   F   V I+      G   SK+ AEQ AA + L
Sbjct: 208 EERGPAHSREFISRVHIADKLEGIGTGRSKKEAEQQAAKQAL 249


>gi|295706311|ref|YP_003599386.1| ribonuclease III [Bacillus megaterium DSM 319]
 gi|294803970|gb|ADF41036.1| ribonuclease III [Bacillus megaterium DSM 319]
          Length = 265

 Score =  102 bits (254), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 106/217 (48%), Gaps = 7/217 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           ++  +K IG  F N +LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 37  FAEFQKEIGIQFTNEALLFQAFTHSSYVNEHRRRPYEDNERLEFLGDAVLELTVSQFLFK 96

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +    A E+D    + +             ++ ADV E+
Sbjct: 97  KYPTMSEGELTKLRAAVVCEPSLVTFANEMDFGKLVLLGKGEEMTGGRSRPALLADVFEA 156

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179
            I ALYLD G++   T + K    + +  G F    D K++LQE          EYKV  
Sbjct: 157 FIGALYLDQGLDTVVTILKKVVFPK-INEGAFSHVMDFKSQLQEVIQRDGVGQLEYKVLQ 215

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             GP H+  F   V ++G     G+  SK+ AEQ AA
Sbjct: 216 EKGPAHNREFLSRVSLNGEELGVGVGRSKKEAEQKAA 252


>gi|119897933|ref|YP_933146.1| ribonuclease III [Azoarcus sp. BH72]
 gi|119670346|emb|CAL94259.1| putative Ribonuclease III [Azoarcus sp. BH72]
          Length = 223

 Score =  102 bits (254), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/211 (33%), Positives = 103/211 (48%), Gaps = 6/211 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L++ +G+ FA   LL++ALTH S     Q + ERLEFLGD IL  + S  L+  F   +E
Sbjct: 6   LQRALGHQFAQPELLQQALTHRSFG---QPNNERLEFLGDSILNCVTSIALYERFGGLRE 62

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELS     LV  +   ++A +L L   +R+     K       SI AD +E++ AA++L
Sbjct: 63  GELSRLRAGLVCQDALHRIAVQLKLGDCLRLGEGELKSGGFRRPSILADALEAIFAAVFL 122

Query: 129 DGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D     A   +D+ +      ++ G   +D KT LQEW   +    P Y +   +G  H 
Sbjct: 123 DSDFAGAKAVIDRLYAPLLAEVEPGAPAKDPKTALQEWLQGRKSPLPTYVMVQVTGEAHA 182

Query: 187 PRFTVVVEISG-LAPAQGMDCSKRAAEQVAA 216
             F V  E+        G   S+R AEQ AA
Sbjct: 183 QEFEVACEVEKHKVRTVGRGTSRRIAEQRAA 213


>gi|284054412|ref|ZP_06384622.1| ribonuclease III [Arthrospira platensis str. Paraca]
          Length = 394

 Score =  102 bits (254), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 112/228 (49%), Gaps = 21/228 (9%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYER----LEFLGDRILGLLISTLLFNH 62
           S L K+I   F N  LL  ALTHSS  + + +  +R    LEFLGD +L  +    L++ 
Sbjct: 166 SKLLKKI--PFQNVDLLNHALTHSSYLYEHPKEVKRDNELLEFLGDSVLNFISGEYLYHK 223

Query: 63  FDS-AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           + S   EG+L+   ++LV  +  ++ A +L L  +IR+         +   S+ ++  E+
Sbjct: 224 YKSVGNEGDLTKLRSALVENKQLAKFAEKLALQQYIRLGKG-----VALNPSLLSNTFEA 278

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALK--------SGKFRRDAKTELQEWAHAKFG-VT 172
           +I A +LD G++    F+   +     +        SGK   D+K  LQEW     G +T
Sbjct: 279 MIGACFLDSGMKKVQEFLQPLFDSVIAEITSLSQGNSGKVAADSKNRLQEWVQKNIGPIT 338

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           PEY+     G DH  +FTV V + G    QG   SK+ A + AA + L
Sbjct: 339 PEYETIKEEGADHQKQFTVQVMVEGKVYGQGKGLSKKEASKKAAEKAL 386


>gi|21674928|ref|NP_662993.1| ribonuclease III [Chlorobium tepidum TLS]
 gi|28201878|sp|Q8KAN7|RNC_CHLTE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|21648156|gb|AAM73335.1| ribonuclease III [Chlorobium tepidum TLS]
          Length = 272

 Score =  102 bits (254), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/212 (33%), Positives = 104/212 (49%), Gaps = 8/212 (3%)

Query: 19  NRSLLEKALTHSSISHSYQ------ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           NR +   ALTH S+ H +       ES +RLEFLGD +L LLIS  LF  F  + EG LS
Sbjct: 44  NRLIYRTALTHRSVLHDHHSEEHKPESNQRLEFLGDAVLDLLISEHLFKQFPGSDEGHLS 103

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                +V+ ++ +  A EL L   + +     K       S  AD +E+L+ A+YLD G+
Sbjct: 104 SNRAKIVNRKSLAAFALELQLGEHLIIGESADKQKIRTSESALADALEALVGAIYLDQGL 163

Query: 133 EVAGTFVDKY--WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
             A  F+  +   K    K  +   + K+ L E+  ++    P Y V    G +H+  F 
Sbjct: 164 AGAERFITNHVIAKVDLHKLVEAEYNYKSRLIEYTQSRQLPPPLYTVITEEGAEHEKTFV 223

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           V V  +G    +G    K+ AEQ+AA E +KR
Sbjct: 224 VEVSCNGQPLGRGTAPRKKDAEQLAAKEAMKR 255


>gi|291570878|dbj|BAI93150.1| ribonuclease III [Arthrospira platensis NIES-39]
          Length = 395

 Score =  102 bits (254), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 112/228 (49%), Gaps = 21/228 (9%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYER----LEFLGDRILGLLISTLLFNH 62
           S L K+I   F N  LL  ALTHSS  + + +  +R    LEFLGD +L  +    L++ 
Sbjct: 167 SKLLKKI--PFQNVDLLNHALTHSSYLYEHPKEVKRDNELLEFLGDSVLNFISGEYLYHK 224

Query: 63  FDS-AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           + S   EG+L+   ++LV  +  ++ A +L L  +IR+         +   S+ ++  E+
Sbjct: 225 YKSVGNEGDLTKLRSALVENKQLAKFAEKLALQQYIRLGKG-----VALNPSLLSNTFEA 279

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALK--------SGKFRRDAKTELQEWAHAKFG-VT 172
           +I A +LD G++    F+   +     +        SGK   D+K  LQEW     G +T
Sbjct: 280 MIGACFLDSGMKKVQEFLQPLFDSVIAEITSLSQGNSGKVAADSKNRLQEWVQKNIGPIT 339

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           PEY+     G DH  +FTV V + G    QG   SK+ A + AA + L
Sbjct: 340 PEYETIKEEGADHQKQFTVQVMVEGKVYGQGKGLSKKEASKKAAEKAL 387


>gi|19703497|ref|NP_603059.1| ribonuclease III [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|22654053|sp|Q8RGX3|RNC_FUSNN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|19713585|gb|AAL94358.1| Ribonuclease III [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
          Length = 234

 Score =  102 bits (253), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 122/226 (53%), Gaps = 13/226 (5%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           LE ++ Y F +R+LL+ AL H S+ +  +E    + ERLE LGD +L L+++  L+  + 
Sbjct: 7   LEHKLNYYFNDRNLLKNALLHKSLGNERKEYKNQTNERLELLGDAVLDLIVAEYLYKSYK 66

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS---FMTSIQADVVES 121
           +A EG ++     +VS    ++++R++ +  F+ +S   R +V S      SI AD  E+
Sbjct: 67  NASEGPIAKLKAMIVSEPILAKISRQIGVGKFLMLS---RGEVMSGGRNRESILADSFEA 123

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           ++ A+Y+D  ++ A  F   + KQ    ++  +   D K+ LQE+   +F   P Y++  
Sbjct: 124 ILGAVYIDSNLDEARVFALSHIKQYIDHIEENEDILDFKSILQEYVQKEFKTVPTYELVA 183

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
             GPDH   F + V I G    + +  +K+ AEQ++A  +  + G+
Sbjct: 184 ERGPDHMKEFEIQV-IVGNYKEKAVARNKKKAEQLSAKALCIKLGV 228


>gi|281413069|ref|YP_003347148.1| ribonuclease III [Thermotoga naphthophila RKU-10]
 gi|281374172|gb|ADA67734.1| ribonuclease III [Thermotoga naphthophila RKU-10]
          Length = 240

 Score =  102 bits (253), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 113/218 (51%), Gaps = 11/218 (5%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ-------ESYERLEFLGDRILGLLISTLLFN 61
            +K+ G  F N  LL +AL HSS ++          ES E+LEFLGD +L L +  +L+ 
Sbjct: 12  FQKKTGINFKNEELLFRALCHSSYANEQNQAGRKNVESNEKLEFLGDAVLELFVCEILYK 71

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +  A+ G+L+   ++  S E  + V+R+++L  F+ +     K       SI AD  E+
Sbjct: 72  KYPEAEVGDLARAKSAAASEEVLAMVSRKMNLGKFLFLGKGEEKTGGRDRDSILADAFEA 131

Query: 122 LIAALYLDGGIEVAGTFVDK---YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           L+AA+YLD G E      ++   ++ ++ ++ G+   D KT LQE   ++  V PEY + 
Sbjct: 132 LLAAIYLDQGYEKIKELFEQEFEFYIEKIMR-GEMLFDYKTALQEIVQSEHKVPPEYVLV 190

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
                D D  F V V + G + A G   +K+ AE+ AA
Sbjct: 191 RTEKNDGDRIFVVEVRVDGKSIAMGRGRTKKEAEKEAA 228


>gi|302389624|ref|YP_003825445.1| RNAse III [Thermosediminibacter oceani DSM 16646]
 gi|302200252|gb|ADL07822.1| RNAse III [Thermosediminibacter oceani DSM 16646]
          Length = 241

 Score =  102 bits (253), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 114/223 (51%), Gaps = 14/223 (6%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLLFNHFD 64
           L++ +G  F + ++L +A  H S ++    S+QE  +RLEFLGD +L L+IS  +++ + 
Sbjct: 14  LQQILGVDFDDLNILNQAFIHPSYAYEKGLSHQEHNQRLEFLGDAVLELVISEWIYDKYP 73

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EGEL+     LV  E+ + ++REL L  F+ +             SI AD  E+LI 
Sbjct: 74  NYTEGELTKLRALLVCEESLAYLSRELTLGDFLIMGKGEEITGGREKASILADTFEALIG 133

Query: 125 ALYLDGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPE---YKVT 178
           A+YLD G      FV + +K   +RA K GK   D KT LQE       ++P+   Y V 
Sbjct: 134 AMYLDKGFGAITGFVREKFKPVMERAEK-GKLFPDYKTALQEMLQR---ISPDRITYNVI 189

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              GPDH+  F V V         G   SK+ AEQ AA   ++
Sbjct: 190 KEEGPDHNKTFFVEVVWKNKILGSGCGKSKKEAEQNAAKAAIR 232


>gi|91784707|ref|YP_559913.1| ribonuclease III [Burkholderia xenovorans LB400]
 gi|91688661|gb|ABE31861.1| RNAse III [Burkholderia xenovorans LB400]
          Length = 428

 Score =  102 bits (253), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 68/198 (34%), Positives = 103/198 (52%), Gaps = 7/198 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++ E   RLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSPLESRLRYEFRNAELLRQALTHRSHSSTHNE---RLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
               EG+LS VR N LV  ++  ++A+ L+++  +R+     +       SI AD +E++
Sbjct: 58  GKLDEGDLSRVRAN-LVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADTLEAV 116

Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           + A++LDGG E A T + + +      +      +DAKT LQE+        P Y V   
Sbjct: 117 LGAVFLDGGFEAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT 176

Query: 181 SGPDHDPRFTVVVEISGL 198
            G  H+ +F V   +  L
Sbjct: 177 HGAAHNQQFEVECTVPKL 194


>gi|220934266|ref|YP_002513165.1| Ribonuclease III [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995576|gb|ACL72178.1| Ribonuclease III [Thioalkalivibrio sp. HL-EbGR7]
          Length = 228

 Score =  102 bits (253), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/202 (35%), Positives = 104/202 (51%), Gaps = 6/202 (2%)

Query: 22  LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
           LL +ALTH S       + ERLE+LGD +LG++++  LF     A EG+LS    +LV+ 
Sbjct: 19  LLTEALTHRSAG---SPNNERLEYLGDAVLGMVMAEHLFKAHPEASEGDLSRLRATLVNK 75

Query: 82  ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141
           ++ + + +   L   I +     K   +   SI AD VE++I A+YLD G + A  FV  
Sbjct: 76  DSLAVIGKAQGLGGHINLGQGELKSGGARRNSILADAVEAVIGAVYLDSGFDAARRFVLA 135

Query: 142 YWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
            +  R  +L +    +D KT LQEW   +    P Y+VT  +G  H+ RF  +  + G  
Sbjct: 136 LYADRLESLPALDALKDPKTRLQEWLQGRSRELPVYEVTSVTGKAHEQRFRALCRV-GDQ 194

Query: 200 PAQGMDCSKRAAEQVAAAEVLK 221
              G   S+R AEQ AA   LK
Sbjct: 195 EYPGEGTSRRRAEQAAAECALK 216


>gi|90961602|ref|YP_535518.1| ribonuclease III [Lactobacillus salivarius UCC118]
 gi|301299302|ref|ZP_07205588.1| ribonuclease III [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|122449142|sp|Q1WUA0|RNC_LACS1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|90820796|gb|ABD99435.1| Ribonuclease III [Lactobacillus salivarius UCC118]
 gi|300214418|gb|ADJ78834.1| Ribonuclease 3 (Ribonuclease III) (RNase III) [Lactobacillus
           salivarius CECT 5713]
 gi|300853146|gb|EFK80744.1| ribonuclease III [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 232

 Score =  102 bits (253), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 112/222 (50%), Gaps = 9/222 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES------YERLEFLGDRILGLLISTLLFNH 62
           L++     F +  LL+ A TH+S  +   E       YER+EFLGD ++ L +S  ++ H
Sbjct: 9   LKRDFNITFKDVDLLDAAFTHASYVNETPERKKKLKYYERIEFLGDAVMQLCVSEYIYEH 68

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +    EG++S    ++V A++ S+ A E     +IR+     K       S+  D+ ES 
Sbjct: 69  YPEMPEGKMSRLRAAMVRADSFSKFAIECHFNEYIRLGKGEEKGNARQRPSLLCDIFESF 128

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180
           I ALYLD G +    F+ K    + L+ G F    D KTELQE          +Y     
Sbjct: 129 IGALYLDQGKDEVVRFISKVIFPK-LELGWFDHMMDNKTELQEVLQQNGECKIKYNEVNV 187

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +GPD++  +T+ V ++     +G   +K+AAEQ+AA + LK+
Sbjct: 188 TGPDNERVYTMNVVVNNEVMGEGTGRTKKAAEQMAAYQALKK 229


>gi|15605018|ref|NP_219802.1| ribonuclease III [Chlamydia trachomatis D/UW-3/CX]
 gi|76789019|ref|YP_328105.1| ribonuclease III [Chlamydia trachomatis A/HAR-13]
 gi|237802720|ref|YP_002887914.1| ribonuclease III [Chlamydia trachomatis B/Jali20/OT]
 gi|237804642|ref|YP_002888796.1| ribonuclease III [Chlamydia trachomatis B/TZ1A828/OT]
 gi|255311099|ref|ZP_05353669.1| ribonuclease III [Chlamydia trachomatis 6276]
 gi|255317400|ref|ZP_05358646.1| ribonuclease III [Chlamydia trachomatis 6276s]
 gi|7531193|sp|O84299|RNC_CHLTR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|90101618|sp|Q3KM65|RNC_CHLTA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|3328712|gb|AAC67890.1| Ribonuclease III [Chlamydia trachomatis D/UW-3/CX]
 gi|76167549|gb|AAX50557.1| ribonuclease III [Chlamydia trachomatis A/HAR-13]
 gi|231272942|emb|CAX09853.1| ribonuclease III [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231273954|emb|CAX10746.1| ribonuclease III [Chlamydia trachomatis B/Jali20/OT]
 gi|296435814|gb|ADH17988.1| ribonuclease III [Chlamydia trachomatis G/9768]
 gi|296436739|gb|ADH18909.1| ribonuclease III [Chlamydia trachomatis G/11222]
 gi|296437674|gb|ADH19835.1| ribonuclease III [Chlamydia trachomatis G/11074]
 gi|297140173|gb|ADH96931.1| ribonuclease III [Chlamydia trachomatis G/9301]
 gi|297748426|gb|ADI50972.1| Ribonuclease III [Chlamydia trachomatis D-EC]
 gi|297749306|gb|ADI51984.1| Ribonuclease III [Chlamydia trachomatis D-LC]
          Length = 231

 Score =  102 bits (253), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 108/215 (50%), Gaps = 3/215 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDS 65
           +E ++ + F++  LL  ALTH S  + +   +E  ERLEFLGD +LGL+++  LF  F +
Sbjct: 10  IESKLNFTFSHPRLLITALTHPSYRNEFPSAEEDSERLEFLGDAVLGLVVTEHLFLLFPA 69

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG LS    +LV+AE C +  ++L L   + +    +        S  A+++E+++ A
Sbjct: 70  LNEGLLSTTRAALVNAEACFEYTQKLSLGEHLLIGRGEKMQSHRGKISAYANLLEAILGA 129

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           +YLDGG+  A   +      +         + K  LQ++      V P YK       D 
Sbjct: 130 VYLDGGLSPARQIIVPLLPDKESILPLMLVNPKNRLQQFTQQTLKVLPSYKALPWKSEDG 189

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            P + V V ++G    +G   SK+ AE++AA + L
Sbjct: 190 SPGYHVQVFVNGDLWGEGFAGSKKEAEKLAAKQAL 224


>gi|290968970|ref|ZP_06560505.1| ribonuclease III [Megasphaera genomosp. type_1 str. 28L]
 gi|290780926|gb|EFD93519.1| ribonuclease III [Megasphaera genomosp. type_1 str. 28L]
          Length = 236

 Score =  102 bits (253), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 74/217 (34%), Positives = 109/217 (50%), Gaps = 16/217 (7%)

Query: 17  FANRSLLEKALTHSSIS--HSYQESY--ERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           F N  LL++ALTHSS +  H  +  Y  ERLEFLGD IL L++   LF  +   +EGELS
Sbjct: 21  FQNLLLLDQALTHSSYANEHKIRHGYFNERLEFLGDAILDLVVGEYLFLQYPQMQEGELS 80

Query: 73  VRFNSLVSAETCSQVARELDLASFI-----RVSSDLRKDVCSFMTSIQADVVESLIAALY 127
               S+VS    + V     +  ++      +SS  R+        I AD  E+++ A+Y
Sbjct: 81  KARASIVSEAPLAAVCSAFHMGKYLLLGHGEISSGGRE-----RPGILADAFEAVVGAVY 135

Query: 128 LDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           +D   E A  F+ ++ +     +++G + +D KT  QE+          Y +   SGPDH
Sbjct: 136 MDASYEEARKFILRHLRDYLALVENGHYDQDYKTLFQEYIQRDGEHHITYSLCKESGPDH 195

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           D  FT+ V   G    +G   SK+ AEQ AA + L R
Sbjct: 196 DKTFTMQVAADGKVLGEGCGKSKKMAEQHAARQALLR 232


>gi|27066029|pdb|1O0W|A Chain A, Crystal Structure Of Ribonuclease Iii (Tm1102) From
           Thermotoga Maritima At 2.0 A Resolution
 gi|27066030|pdb|1O0W|B Chain B, Crystal Structure Of Ribonuclease Iii (Tm1102) From
           Thermotoga Maritima At 2.0 A Resolution
          Length = 252

 Score =  102 bits (253), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 112/218 (51%), Gaps = 11/218 (5%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ-------ESYERLEFLGDRILGLLISTLLFN 61
            +K  G  F N  LL +AL HSS ++          ES E+LEFLGD +L L +  +L+ 
Sbjct: 24  FQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEILYK 83

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +  A+ G+L+   ++  S E  + V+R+++L  F+ +     K       SI AD  E+
Sbjct: 84  KYPEAEVGDLARVKSAAASEEVLAMVSRKMNLGKFLFLGKGEEKTGGRDRDSILADAFEA 143

Query: 122 LIAALYLDGGIEVAGTFVDK---YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           L+AA+YLD G E      ++   ++ ++ +K G+   D KT LQE   ++  V PEY + 
Sbjct: 144 LLAAIYLDQGYEKIKELFEQEFEFYIEKIMK-GEMLFDYKTALQEIVQSEHKVPPEYILV 202

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
                D D  F V V ++G   A G   +K+ AE+ AA
Sbjct: 203 RTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAA 240


>gi|269218651|ref|ZP_06162505.1| ribonuclease III [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211762|gb|EEZ78102.1| ribonuclease III [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 228

 Score =  102 bits (253), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 74/217 (34%), Positives = 112/217 (51%), Gaps = 6/217 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY-ERLEFLGDRILGLLISTLLFNH 62
           + Y  L +R G     R LL  ALTH S +  + E + ERLEFLGD +LG + +  +F  
Sbjct: 1   MSYRELVERWGVDI-RRPLLRLALTHRSFAFEHDEPHNERLEFLGDSVLGFITADKVFRE 59

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F  ++EG++S      VS +  + +AREL+L  FIR+             SI +D VE+L
Sbjct: 60  FPDSREGDMSRMKTFAVSEKALASIARELELGRFIRLGRGEDLSGGRDKDSILSDTVEAL 119

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGV-TPEYKVTF 179
           IAA YL  G++VA   V++    +   +       D +T  +E AH +  V + ++++T 
Sbjct: 120 IAATYLQHGLDVARKIVERLVAAKIEDASLLGPNLDWQTSFEEVAHERGMVGSLQFELT- 178

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             GPDH   +T V  + G    +G   SK+ A Q AA
Sbjct: 179 SEGPDHQRVYTAVASMGGRVWGEGTGSSKKTARQAAA 215


>gi|15643859|ref|NP_228908.1| ribonuclease III [Thermotoga maritima MSB8]
 gi|7531194|sp|Q9X0I6|RNC_THEMA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|4981647|gb|AAD36178.1|AE001769_8 ribonuclease III [Thermotoga maritima MSB8]
          Length = 240

 Score =  102 bits (253), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 112/218 (51%), Gaps = 11/218 (5%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ-------ESYERLEFLGDRILGLLISTLLFN 61
            +K  G  F N  LL +AL HSS ++          ES E+LEFLGD +L L +  +L+ 
Sbjct: 12  FQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEILYK 71

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +  A+ G+L+   ++  S E  + V+R+++L  F+ +     K       SI AD  E+
Sbjct: 72  KYPEAEVGDLARVKSAAASEEVLAMVSRKMNLGKFLFLGKGEEKTGGRDRDSILADAFEA 131

Query: 122 LIAALYLDGGIEVAGTFVDK---YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           L+AA+YLD G E      ++   ++ ++ +K G+   D KT LQE   ++  V PEY + 
Sbjct: 132 LLAAIYLDQGYEKIKELFEQEFEFYIEKIMK-GEMLFDYKTALQEIVQSEHKVPPEYILV 190

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
                D D  F V V ++G   A G   +K+ AE+ AA
Sbjct: 191 RTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAA 228


>gi|148993857|ref|ZP_01823259.1| ribonuclease III [Streptococcus pneumoniae SP9-BS68]
 gi|149007089|ref|ZP_01830758.1| ribonuclease III [Streptococcus pneumoniae SP18-BS74]
 gi|149012300|ref|ZP_01833369.1| ribonuclease III [Streptococcus pneumoniae SP19-BS75]
 gi|149019239|ref|ZP_01834601.1| ribonuclease III [Streptococcus pneumoniae SP23-BS72]
 gi|168486568|ref|ZP_02711076.1| ribonuclease III [Streptococcus pneumoniae CDC1087-00]
 gi|168489075|ref|ZP_02713274.1| ribonuclease III [Streptococcus pneumoniae SP195]
 gi|182684025|ref|YP_001835772.1| ribonuclease III [Streptococcus pneumoniae CGSP14]
 gi|225854713|ref|YP_002736225.1| ribonuclease III [Streptococcus pneumoniae JJA]
 gi|225859042|ref|YP_002740552.1| ribonuclease III [Streptococcus pneumoniae 70585]
 gi|303254257|ref|ZP_07340366.1| ribonuclease III [Streptococcus pneumoniae BS455]
 gi|303258883|ref|ZP_07344862.1| ribonuclease III [Streptococcus pneumoniae SP-BS293]
 gi|303261566|ref|ZP_07347513.1| ribonuclease III [Streptococcus pneumoniae SP14-BS292]
 gi|303264237|ref|ZP_07350157.1| ribonuclease III [Streptococcus pneumoniae BS397]
 gi|303266132|ref|ZP_07352025.1| ribonuclease III [Streptococcus pneumoniae BS457]
 gi|303268141|ref|ZP_07353941.1| ribonuclease III [Streptococcus pneumoniae BS458]
 gi|307127162|ref|YP_003879193.1| ribonuclease III [Streptococcus pneumoniae 670-6B]
 gi|238691158|sp|B2IPN5|RNC_STRPS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807901|sp|C1C7M6|RNC_STRP7 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807904|sp|C1CEK4|RNC_STRZJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|147761393|gb|EDK68359.1| ribonuclease III [Streptococcus pneumoniae SP18-BS74]
 gi|147763626|gb|EDK70561.1| ribonuclease III [Streptococcus pneumoniae SP19-BS75]
 gi|147927682|gb|EDK78707.1| ribonuclease III [Streptococcus pneumoniae SP9-BS68]
 gi|147931109|gb|EDK82088.1| ribonuclease III [Streptococcus pneumoniae SP23-BS72]
 gi|182629359|gb|ACB90307.1| ribonuclease III [Streptococcus pneumoniae CGSP14]
 gi|183570477|gb|EDT91005.1| ribonuclease III [Streptococcus pneumoniae CDC1087-00]
 gi|183572564|gb|EDT93092.1| ribonuclease III [Streptococcus pneumoniae SP195]
 gi|225722013|gb|ACO17867.1| ribonuclease III [Streptococcus pneumoniae 70585]
 gi|225722854|gb|ACO18707.1| ribonuclease III [Streptococcus pneumoniae JJA]
 gi|301801897|emb|CBW34621.1| ribonuclease III [Streptococcus pneumoniae INV200]
 gi|302598751|gb|EFL65788.1| ribonuclease III [Streptococcus pneumoniae BS455]
 gi|302637146|gb|EFL67634.1| ribonuclease III [Streptococcus pneumoniae SP14-BS292]
 gi|302639826|gb|EFL70282.1| ribonuclease III [Streptococcus pneumoniae SP-BS293]
 gi|302642358|gb|EFL72705.1| ribonuclease III [Streptococcus pneumoniae BS458]
 gi|302644302|gb|EFL74556.1| ribonuclease III [Streptococcus pneumoniae BS457]
 gi|302646049|gb|EFL76276.1| ribonuclease III [Streptococcus pneumoniae BS397]
 gi|306484224|gb|ADM91093.1| ribonuclease III [Streptococcus pneumoniae 670-6B]
 gi|332073586|gb|EGI84065.1| ribonuclease III [Streptococcus pneumoniae GA17570]
 gi|332074581|gb|EGI85055.1| ribonuclease III [Streptococcus pneumoniae GA17545]
          Length = 232

 Score =  102 bits (253), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 108/222 (48%), Gaps = 7/222 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62
           + L+      F ++ LLE A TH+S ++ ++       ERLEFLGD +L LLIS  L+  
Sbjct: 6   TVLKNHFAIEFTDKKLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLYKK 65

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +    EG+LS     +V  E+ +  AR+     FI++     K       +I  D  E+ 
Sbjct: 66  YPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILGDAFEAF 125

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180
           + AL LD  +     F+ +    + +++G+F    D KT LQE       V   Y+V   
Sbjct: 126 LGALLLDKDVAKVKEFIYQVMIPK-VEAGEFEMITDYKTHLQELLQVNGDVAIRYQVISE 184

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +GP HD  F V V + G +  QG   SK+ AEQ AA   +++
Sbjct: 185 TGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226


>gi|296158234|ref|ZP_06841066.1| ribonuclease III [Burkholderia sp. Ch1-1]
 gi|295891570|gb|EFG71356.1| ribonuclease III [Burkholderia sp. Ch1-1]
          Length = 416

 Score =  102 bits (253), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 68/198 (34%), Positives = 103/198 (52%), Gaps = 7/198 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++ E   RLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSPLESRLRYEFRNAELLRQALTHRSHSSTHNE---RLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
               EG+LS VR N LV  ++  ++A+ L+++  +R+     +       SI AD +E++
Sbjct: 58  GKLDEGDLSRVRAN-LVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADTLEAV 116

Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           + A++LDGG E A T + + +      +      +DAKT LQE+        P Y V   
Sbjct: 117 LGAVFLDGGFEAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT 176

Query: 181 SGPDHDPRFTVVVEISGL 198
            G  H+ +F V   +  L
Sbjct: 177 HGAAHNQQFEVECTVPKL 194


>gi|261377909|ref|ZP_05982482.1| ribonuclease III [Neisseria cinerea ATCC 14685]
 gi|269145767|gb|EEZ72185.1| ribonuclease III [Neisseria cinerea ATCC 14685]
          Length = 239

 Score =  102 bits (253), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 115/220 (52%), Gaps = 8/220 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++K++GY F + SLL +ALTH S    + E   R EF+GD IL   ++ +LF+ F  
Sbjct: 11  HTAIQKKLGYEFRDISLLRQALTHRSCHAKHNE---RFEFVGDSILNYTVARMLFDAFPK 67

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+D+   + + +   K       SI AD +E++ AA
Sbjct: 68  LTEGELSRLRASLVNEGVLAEIAAEMDVGEGLYLGTGELKSGGFRRPSILADAMEAMFAA 127

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +  D     A   V   + +R +K   F+   +D KT LQE   A+    P+Y++  + G
Sbjct: 128 VSFDADFNTAEKVVRHLFSER-VKRADFQNQEKDGKTALQEALQARRFALPKYRIEEQIG 186

Query: 183 PDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221
             +D  F +  ++  L    +    S++AAEQ AA E L+
Sbjct: 187 HANDSMFVISCDLGELGFVCRAKGTSRKAAEQSAAKEALQ 226


>gi|322378529|ref|ZP_08052977.1| ribonuclease III [Helicobacter suis HS1]
 gi|321149043|gb|EFX43495.1| ribonuclease III [Helicobacter suis HS1]
          Length = 216

 Score =  102 bits (253), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 103/206 (50%), Gaps = 4/206 (1%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           +GY F +  LL++ALTH S      ++ ERLEFLGD +L L+++ +LF  F   +EG+LS
Sbjct: 1   MGYVFKDPLLLQQALTHRSTKA--HKNNERLEFLGDAVLDLVVAEILFTRFTDLQEGDLS 58

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
               SLV+ +   ++A  L+L   I +S     +      SI +   E+L+ A+YL+ G+
Sbjct: 59  KMRASLVNEKAFFKLALSLNLQDHILISQAEANNNGHTKPSILSSAFEALMGAIYLESGL 118

Query: 133 EVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           E+    +          L       D K+ LQE   A+F   P Y +   SGPDH  +F 
Sbjct: 119 EIIKNLIQDLLDMAYPNLSPKTLFMDYKSALQELTQARFKAIPIYALKSESGPDHAKQFE 178

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAA 216
           + + I           SK+ AEQ+ A
Sbjct: 179 MQIFILNKLYGTCKAGSKKQAEQLCA 204


>gi|320352215|ref|YP_004193554.1| RNAse III [Desulfobulbus propionicus DSM 2032]
 gi|320120717|gb|ADW16263.1| RNAse III [Desulfobulbus propionicus DSM 2032]
          Length = 243

 Score =  101 bits (252), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 71/216 (32%), Positives = 109/216 (50%), Gaps = 25/216 (11%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERL---------EFLGDRILGLLISTLL 59
           L++RIGY F +  LL+ +L HSS +      +ERL         EFLGD +L L +  +L
Sbjct: 19  LQERIGYRFRDLRLLQLSLIHSSFA------FERLDDGRHNETQEFLGDAVLDLTVGYIL 72

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F  F   +EG+L+   ++LV+ +  +  ARE+DL  ++ +            +SI +   
Sbjct: 73  FVRFPEMREGKLTRIRSALVNEQGLADRAREIDLGKYLLLGKGENASNGRDKSSILSCAY 132

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWK------QRALKSGKFRRDAKTELQEWAHAKFGVTP 173
           E+L+ AL+LDGG + A  FV ++++      Q  L S     DAK+ LQE    +F   P
Sbjct: 133 EALVGALFLDGGYDQALAFVRRFFEPHIDQHQEQLVSA----DAKSSLQELLQERFNEGP 188

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           EY +T   GP H   F++ V   G     G   SK+
Sbjct: 189 EYMLTGEEGPAHARLFSITVTFQGEELGSGRASSKK 224


>gi|227517298|ref|ZP_03947347.1| ribonuclease III [Enterococcus faecalis TX0104]
 gi|227554519|ref|ZP_03984566.1| ribonuclease III [Enterococcus faecalis HH22]
 gi|229547475|ref|ZP_04436200.1| ribonuclease III [Enterococcus faecalis TX1322]
 gi|229548050|ref|ZP_04436775.1| ribonuclease III [Enterococcus faecalis ATCC 29200]
 gi|256854772|ref|ZP_05560136.1| ribonuclease III [Enterococcus faecalis T8]
 gi|293385103|ref|ZP_06630929.1| ribonuclease III [Enterococcus faecalis R712]
 gi|293389076|ref|ZP_06633548.1| ribonuclease III [Enterococcus faecalis S613]
 gi|307270584|ref|ZP_07551882.1| ribonuclease III [Enterococcus faecalis TX4248]
 gi|307273593|ref|ZP_07554821.1| ribonuclease III [Enterococcus faecalis TX0855]
 gi|307284870|ref|ZP_07565026.1| ribonuclease III [Enterococcus faecalis TX0860]
 gi|307288870|ref|ZP_07568843.1| ribonuclease III [Enterococcus faecalis TX0109]
 gi|307292116|ref|ZP_07571982.1| ribonuclease III [Enterococcus faecalis TX0411]
 gi|312902145|ref|ZP_07761405.1| ribonuclease III [Enterococcus faecalis TX0470]
 gi|312905399|ref|ZP_07764513.1| ribonuclease III [Enterococcus faecalis TX0635]
 gi|312906714|ref|ZP_07765714.1| ribonuclease III [Enterococcus faecalis DAPTO 512]
 gi|312910825|ref|ZP_07769661.1| ribonuclease III [Enterococcus faecalis DAPTO 516]
 gi|312953196|ref|ZP_07772042.1| ribonuclease III [Enterococcus faecalis TX0102]
 gi|227075305|gb|EEI13268.1| ribonuclease III [Enterococcus faecalis TX0104]
 gi|227176317|gb|EEI57289.1| ribonuclease III [Enterococcus faecalis HH22]
 gi|229306839|gb|EEN72835.1| ribonuclease III [Enterococcus faecalis ATCC 29200]
 gi|229307399|gb|EEN73386.1| ribonuclease III [Enterococcus faecalis TX1322]
 gi|256710332|gb|EEU25376.1| ribonuclease III [Enterococcus faecalis T8]
 gi|291077580|gb|EFE14944.1| ribonuclease III [Enterococcus faecalis R712]
 gi|291081544|gb|EFE18507.1| ribonuclease III [Enterococcus faecalis S613]
 gi|306496769|gb|EFM66320.1| ribonuclease III [Enterococcus faecalis TX0411]
 gi|306500142|gb|EFM69486.1| ribonuclease III [Enterococcus faecalis TX0109]
 gi|306503129|gb|EFM72386.1| ribonuclease III [Enterococcus faecalis TX0860]
 gi|306509606|gb|EFM78648.1| ribonuclease III [Enterococcus faecalis TX0855]
 gi|306513165|gb|EFM81799.1| ribonuclease III [Enterococcus faecalis TX4248]
 gi|310627362|gb|EFQ10645.1| ribonuclease III [Enterococcus faecalis DAPTO 512]
 gi|310628813|gb|EFQ12096.1| ribonuclease III [Enterococcus faecalis TX0102]
 gi|310631128|gb|EFQ14411.1| ribonuclease III [Enterococcus faecalis TX0635]
 gi|311288848|gb|EFQ67404.1| ribonuclease III [Enterococcus faecalis DAPTO 516]
 gi|311290809|gb|EFQ69365.1| ribonuclease III [Enterococcus faecalis TX0470]
 gi|315026454|gb|EFT38386.1| ribonuclease III [Enterococcus faecalis TX2137]
 gi|315028377|gb|EFT40309.1| ribonuclease III [Enterococcus faecalis TX4000]
 gi|315031785|gb|EFT43717.1| ribonuclease III [Enterococcus faecalis TX0017]
 gi|315034802|gb|EFT46734.1| ribonuclease III [Enterococcus faecalis TX0027]
 gi|315145468|gb|EFT89484.1| ribonuclease III [Enterococcus faecalis TX2141]
 gi|315146605|gb|EFT90621.1| ribonuclease III [Enterococcus faecalis TX4244]
 gi|315151034|gb|EFT95050.1| ribonuclease III [Enterococcus faecalis TX0012]
 gi|315152764|gb|EFT96780.1| ribonuclease III [Enterococcus faecalis TX0031]
 gi|315154690|gb|EFT98706.1| ribonuclease III [Enterococcus faecalis TX0043]
 gi|315159400|gb|EFU03417.1| ribonuclease III [Enterococcus faecalis TX0312]
 gi|315161159|gb|EFU05176.1| ribonuclease III [Enterococcus faecalis TX0645]
 gi|315164397|gb|EFU08414.1| ribonuclease III [Enterococcus faecalis TX1302]
 gi|315167205|gb|EFU11222.1| ribonuclease III [Enterococcus faecalis TX1341]
 gi|315171217|gb|EFU15234.1| ribonuclease III [Enterococcus faecalis TX1342]
 gi|315172944|gb|EFU16961.1| ribonuclease III [Enterococcus faecalis TX1346]
 gi|315573246|gb|EFU85437.1| ribonuclease III [Enterococcus faecalis TX0309B]
 gi|315577147|gb|EFU89338.1| ribonuclease III [Enterococcus faecalis TX0630]
 gi|315581180|gb|EFU93371.1| ribonuclease III [Enterococcus faecalis TX0309A]
 gi|323479029|gb|ADX78468.1| ribonuclease III [Enterococcus faecalis 62]
 gi|327536218|gb|AEA95052.1| ribonuclease III [Enterococcus faecalis OG1RF]
 gi|329575676|gb|EGG57203.1| ribonuclease III [Enterococcus faecalis TX1467]
          Length = 243

 Score =  101 bits (252), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 113/221 (51%), Gaps = 7/221 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSI--SHSYQE--SYERLEFLGDRILGLLISTLLFNH 62
           + L++R G  F + +LLE+A THSS    H Y +    ERLEFLGD +L L++S  L+  
Sbjct: 20  TELKERYGIVFHDVNLLEQAFTHSSYVNEHRYLKLSDNERLEFLGDAVLELIVSQYLYLK 79

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG+L+    ++V  ++ ++ A+E    ++I +             S+  D+ E+ 
Sbjct: 80  FPELPEGKLTKMRAAIVREDSLAKFAKECHFDNYILLGKGEEASGGRTRASLLCDLFEAF 139

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180
           + ALYLD  +  A  F++     + + +G F    D KT+LQE    K  V+ EY++   
Sbjct: 140 LGALYLDQKVGAAKKFIEDVIFPK-IDAGAFSHEMDHKTQLQEVLQRKGDVSIEYRLIKE 198

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            GP HD  F   V ++G     G   SK+ AEQ AA   LK
Sbjct: 199 EGPAHDRTFFTEVYMNGELIGLGQGKSKKLAEQDAAERALK 239


>gi|307276679|ref|ZP_07557797.1| ribonuclease III [Enterococcus faecalis TX2134]
 gi|306506789|gb|EFM75941.1| ribonuclease III [Enterococcus faecalis TX2134]
          Length = 243

 Score =  101 bits (252), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 113/221 (51%), Gaps = 7/221 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSI--SHSYQE--SYERLEFLGDRILGLLISTLLFNH 62
           + L++R G  F + +LLE+A THSS    H Y +    ERLEFLGD +L L++S  L+  
Sbjct: 20  TELKERYGIVFHDVNLLEQAFTHSSYVNEHRYLKLSDNERLEFLGDAVLELIVSQYLYLK 79

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG+L+    ++V  ++ ++ A+E    ++I +             S+  D+ E+ 
Sbjct: 80  FPELPEGKLTKMRAAIVREDSLAKFAKECHFDNYILLGKGEEASGGRTRASLLCDLFEAF 139

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180
           + ALYLD  +  A  F++     + + +G F    D KT+LQE    K  V+ EY++   
Sbjct: 140 LGALYLDQKVGAAKKFIEDVIFPK-IDAGAFSHELDHKTQLQEVLQRKGDVSIEYRLIKE 198

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            GP HD  F   V ++G     G   SK+ AEQ AA   LK
Sbjct: 199 EGPAHDRTFFTEVYMNGELIGLGQGKSKKLAEQDAAERALK 239


>gi|148270763|ref|YP_001245223.1| ribonuclease III [Thermotoga petrophila RKU-1]
 gi|189043372|sp|A5IN74|RNC_THEP1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|147736307|gb|ABQ47647.1| RNAse III [Thermotoga petrophila RKU-1]
          Length = 240

 Score =  101 bits (252), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 112/218 (51%), Gaps = 11/218 (5%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ-------ESYERLEFLGDRILGLLISTLLFN 61
            +K+ G  F N  LL +AL HSS ++          ES E+LEFLGD +L L +  +L+ 
Sbjct: 12  FQKKTGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEILYK 71

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +  A+ G+L+   ++  S E  + V+REL+L  F+ +     K       SI AD  E+
Sbjct: 72  KYPEAEVGDLARAKSAAASEEVLAMVSRELNLGKFLFLGKGEEKTGGRDRDSILADAFEA 131

Query: 122 LIAALYLDGG---IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           L+AA+YLD G   I+       + + ++ ++ G+   D KT LQE   ++  V PEY + 
Sbjct: 132 LLAAIYLDQGYHKIKELFEEEFELYIEKIMR-GEMLFDYKTALQEIVQSEHKVPPEYVLV 190

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
                D D  F V V + G + A G   +K+ AE+ AA
Sbjct: 191 RTEKNDGDRIFVVEVRVDGKSIAMGRGRTKKEAEKEAA 228


>gi|326561464|gb|EGE11814.1| ribonuclease III [Moraxella catarrhalis 46P47B1]
 gi|326562236|gb|EGE12564.1| ribonuclease III [Moraxella catarrhalis 7169]
 gi|326567190|gb|EGE17312.1| ribonuclease III [Moraxella catarrhalis BC1]
 gi|326568472|gb|EGE18552.1| ribonuclease III [Moraxella catarrhalis BC7]
          Length = 262

 Score =  101 bits (252), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 114/224 (50%), Gaps = 10/224 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             L  ++GY F + SLL +ALTH S  +  ++SYERLEFLGD +L  +I+  LF  +   
Sbjct: 33  PVLYAKLGYTFKDVSLLCRALTHRS--YDPKKSYERLEFLGDALLSSIITKALFAQYPKH 90

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+L+    +LV  ET  Q+A  L+L+ ++ +    RK       SI AD VE+LIAA+
Sbjct: 91  DEGKLTRMRAALVRQETLVQIADHLELSRYLILGVGERKGGGRHRASILADAVEALIAAV 150

Query: 127 YLDG----GIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKV--T 178
           YLD     G  +    V  ++K    + G+ +  +DAK+ LQE         P Y++  T
Sbjct: 151 YLDNLNSDGENIIHRMVMDWYKDLIQEVGQEQVLKDAKSRLQELLQGNRLPLPTYELIQT 210

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             S P+          + G+ P      S+R AEQ  A  ++ +
Sbjct: 211 LGSAPNQVFVVRCHCTVVGVDPIIETGASRRIAEQKCAERMINQ 254


>gi|257063721|ref|YP_003143393.1| ribonuclease III [Slackia heliotrinireducens DSM 20476]
 gi|256791374|gb|ACV22044.1| ribonuclease III [Slackia heliotrinireducens DSM 20476]
          Length = 300

 Score =  101 bits (252), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 76/212 (35%), Positives = 107/212 (50%), Gaps = 4/212 (1%)

Query: 13  IGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
           IG  F N  +L  A+TH S +     + SYERLEFLGD ILG +++   F+ +    EG 
Sbjct: 19  IGTQFGNTDILLHAITHPSATEGKPVKLSYERLEFLGDSILGAIVANEAFHRYPDLDEGG 78

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           L+    +LVS  + S+VA EL     I   S  +      + S   +V E+++AALYLD 
Sbjct: 79  LTRIKVALVSGASLSKVAAELGFEDIIVFGSSEQGTGKRGLHSALENVYEAVVAALYLDQ 138

Query: 131 GIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
           G+E A +FV K    R  +       + K+ LQE    + G+TP YK+    GP HD  F
Sbjct: 139 GMEGARSFVMKTLVPRMSRELATEPENPKSALQEKLQEE-GITPTYKLVETQGPPHDRTF 197

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              V     A A GM  +K+ +E  AA   L+
Sbjct: 198 VSQVFAGMKALASGMGRTKKESESQAAKAALE 229


>gi|312127786|ref|YP_003992660.1| ribonuclease iii [Caldicellulosiruptor hydrothermalis 108]
 gi|311777805|gb|ADQ07291.1| ribonuclease III [Caldicellulosiruptor hydrothermalis 108]
          Length = 222

 Score =  101 bits (252), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 71/216 (32%), Positives = 119/216 (55%), Gaps = 9/216 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +EK +GY F +++LL  ALTH S +HS +  YERLEFLGD  L L++S  LF +F    E
Sbjct: 4   IEKALGYKFKDKNLLRLALTHKSATHSNKNCYERLEFLGDAALELVVSKYLFVNFPDLSE 63

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GEL+    ++V ++T S+VA +L+L + I      + +      SI ADV+E++  A+++
Sbjct: 64  GELTNIRAAVVCSQTLSEVAEKLNLKNHIIFGKREKMEKFHENKSILADVLEAIFGAIFI 123

Query: 129 DGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           + G +     +    K   Q+A+ +GK   D KT+LQE    +     + K+ ++     
Sbjct: 124 ESGFDKLEKIIVNLLKPYIQKAV-AGKLFYDYKTKLQEIVQRE----GKKKIVYKDCEII 178

Query: 186 DPR-FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           + + F   + + G   ++G   SK+ A+Q AA + L
Sbjct: 179 EKKYFKSELFVEGKKVSEGYGTSKKEAQQDAAYKFL 214


>gi|319941434|ref|ZP_08015762.1| ribonuclease III [Sutterella wadsworthensis 3_1_45B]
 gi|319805054|gb|EFW01884.1| ribonuclease III [Sutterella wadsworthensis 3_1_45B]
          Length = 226

 Score =  101 bits (252), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 68/200 (34%), Positives = 102/200 (51%), Gaps = 11/200 (5%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF--- 60
           L    LE+RIGY F ++ LL +A+TH S +   QE  ERLEFLGD +L  +I   LF   
Sbjct: 2   LSLEALEERIGYVFQDKKLLRRAVTHRSFA---QEHNERLEFLGDSVLNCVIGYALFLRD 58

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            HF+   EGELS    +LV  +T  ++A ++D++SF+ +     K   +   SI AD +E
Sbjct: 59  KHFN---EGELSRVRANLVCEKTLHEIALKIDVSSFLYMGEGEVKTGGAHRASILADAME 115

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++  A++ + G + A   + K +      L   +  +D KT LQE         PEY + 
Sbjct: 116 AIFGAVFREAGFDTAQRVILKLYDPILTGLTPEQMSKDPKTRLQELLQGDHLPRPEYAIV 175

Query: 179 FRSGPDHDPRFTVVVEISGL 198
             +G  H+ RF     I  L
Sbjct: 176 AATGAAHERRFECECRIERL 195


>gi|326576294|gb|EGE26209.1| ribonuclease III [Moraxella catarrhalis CO72]
          Length = 262

 Score =  101 bits (252), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 114/224 (50%), Gaps = 10/224 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             L  ++GY F + SLL +ALTH S  +  ++SYERLEFLGD +L  +I+  LF  +   
Sbjct: 33  PVLYAKLGYTFKDVSLLCRALTHRS--YDPKKSYERLEFLGDALLSSIITKALFAQYPKH 90

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+L+    +LV  ET  Q+A  L+L+ ++ +    RK       SI AD VE+LIAA+
Sbjct: 91  DEGKLTRMRAALVRQETLVQIADHLELSRYLILGVGERKGGGRHRASILADAVEALIAAV 150

Query: 127 YLDG----GIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKV--T 178
           YLD     G  +    V  ++K    + G+ +  +DAK+ LQE         P Y++  T
Sbjct: 151 YLDNLNSDGENIIHRMVMDWYKDLIQEVGQEQVLKDAKSRLQELLQGNRLPLPTYELIQT 210

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             S P+          + G+ P      S+R AEQ  A  ++ +
Sbjct: 211 LGSAPNQVFVVRCHCTVVGVDPIIETGASRRIAEQKCAERMINQ 254


>gi|108762302|ref|YP_631944.1| ribonuclease III [Myxococcus xanthus DK 1622]
 gi|123074286|sp|Q1D5X9|RNC_MYXXD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|108466182|gb|ABF91367.1| ribonuclease III [Myxococcus xanthus DK 1622]
          Length = 260

 Score =  101 bits (252), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 114/224 (50%), Gaps = 6/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60
           R   LE R+G +F+      +ALTH +  +  ++      +RLEFLGD ++ L +S  L 
Sbjct: 15  RVQLLESRLGLSFSRMETALEALTHKTYVNETRDKELKDNQRLEFLGDSVVNLAVSHRLM 74

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                  EG+L+     +V+ +  ++VAR + L   + +             S+ AD +E
Sbjct: 75  ARCPGLPEGDLTKMRARVVNEDGLARVARTIPLGDLLLLGRGELMSGGREKNSVLADALE 134

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++  A++L  G++ A T VD+Y+      + SG+ R D KT LQE AH +  + P Y+V 
Sbjct: 135 AVFGAVFLTSGLDAAVTLVDRYFADLLDEVSSGQGRLDYKTLLQEMAHERLKLQPRYRVV 194

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             SGP+H   F V + +   A A+    SK+ AEQ AA   L++
Sbjct: 195 SESGPEHSKVFEVELMLGETAFARATGRSKKEAEQSAAQATLEK 238


>gi|23098981|ref|NP_692447.1| ribonuclease III [Oceanobacillus iheyensis HTE831]
 gi|38372423|sp|Q8ER05|RNC_OCEIH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|22777209|dbj|BAC13482.1| ribonuclease III [Oceanobacillus iheyensis HTE831]
          Length = 228

 Score =  101 bits (252), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 110/218 (50%), Gaps = 7/218 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFD 64
           LE+ +G +F  ++LL++A THSS  + +++      ERLEFLGD +L L +S  L+ +  
Sbjct: 6   LEEHLGISFQQKALLKEAFTHSSYVNEHRKQRLSDNERLEFLGDAVLELAVSQYLYRNNK 65

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGE++    ++V   +    A EL+   F+R+    ++       +I AD  E+ + 
Sbjct: 66  DMPEGEMTKLRAAIVCEPSLKNFAEELEFGKFLRLGKGEQQTGGRERPAILADAFEAFLG 125

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182
           ALYLD G +    F++ +   + L +G F    D K++LQE+         EY++    G
Sbjct: 126 ALYLDQGFDNVLDFLNIHVFPK-LTTGAFSHAMDYKSQLQEFVQQHKDQKIEYRIIEEKG 184

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           P H+  F   V I   A   G   +K+ AEQ AA   L
Sbjct: 185 PSHNKEFVAEVVIQEKAAGIGTGRTKKEAEQRAAKNAL 222


>gi|253573486|ref|ZP_04850829.1| ribonuclease III [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251847014|gb|EES75019.1| ribonuclease III [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 232

 Score =  101 bits (252), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 70/209 (33%), Positives = 103/209 (49%), Gaps = 5/209 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
           L++++  AF NR LL++A TH+S  + ++    E  ERLEFLGD +L L +S  L+  F 
Sbjct: 8   LQQKLELAFQNRQLLKQAFTHASYVNEHRFSQYEDNERLEFLGDAVLELTVSEHLYRLFP 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGEL+    ++V   +  + A  L+   ++ +             ++ ADV ES I 
Sbjct: 68  DRPEGELTKLRAAIVCEPSLVKFAENLEFGKYVLLGKGEELTGGRTRPALLADVFESFIG 127

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           ALYLD G+E    F+ ++        GK    D KTELQE        T EY++    GP
Sbjct: 128 ALYLDQGLEAVTAFLHRHVFPNLTLDGKLSTGDFKTELQELTQHHGMGTLEYRIIEERGP 187

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
            H+  F   V + G    QG   SK+ AE
Sbjct: 188 AHEREFVAEVRMDGRPLGQGTGRSKKEAE 216


>gi|307718753|ref|YP_003874285.1| hypothetical protein STHERM_c10670 [Spirochaeta thermophila DSM
           6192]
 gi|306532478|gb|ADN02012.1| hypothetical protein STHERM_c10670 [Spirochaeta thermophila DSM
           6192]
 gi|315185644|gb|EFU19412.1| RNAse III [Spirochaeta thermophila DSM 6578]
          Length = 194

 Score =  101 bits (252), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 96/179 (53%), Gaps = 2/179 (1%)

Query: 41  ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
           ERLEFLGD +LGL ++  L+  F   +EGEL+   + +VS +T  ++AR + + +FI +S
Sbjct: 5   ERLEFLGDAVLGLAVADYLYRTFPEKQEGELARIKSFVVSEDTLYEIARRIKVDNFILIS 64

Query: 101 SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAK 158
                       ++ AD +E++I A +LD G E A  FV +       K    + ++D K
Sbjct: 65  KGEEYAGGRTKKALLADAMEAIIGAYFLDAGFEAARDFVLRLVVPEIEKVVENRHKKDYK 124

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           T LQE+    F   P Y+V  + GP+H+  F + V+I       G   +K+ AEQ AA+
Sbjct: 125 TLLQEYVQKNFKTYPRYRVVEKLGPEHNRTFRIEVQIRDKKYGPGEGKNKKEAEQSAAS 183


>gi|168493169|ref|ZP_02717312.1| ribonuclease III [Streptococcus pneumoniae CDC3059-06]
 gi|183576640|gb|EDT97168.1| ribonuclease III [Streptococcus pneumoniae CDC3059-06]
          Length = 232

 Score =  101 bits (252), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 109/222 (49%), Gaps = 7/222 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62
           + L+      F +++LLE A TH+S ++ ++       ERLEFLGD +L LLIS  L+  
Sbjct: 6   TVLKNHFAIEFTDKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLYKK 65

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +    EG+LS     +V  E+ +  AR+     FI++     K       +I  D  E+ 
Sbjct: 66  YPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILGDAFEAF 125

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180
           + AL LD  +     F+ +    + +++G+F    D KT LQE       V   Y+V   
Sbjct: 126 LGALLLDKDVAKVKEFIYQVMIPK-VEAGEFEMITDYKTYLQELLQVNGDVAIRYQVISE 184

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +GP HD  F V V + G +  QG   SK+ AEQ AA   +++
Sbjct: 185 TGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226


>gi|227872403|ref|ZP_03990750.1| ribonuclease III [Oribacterium sinus F0268]
 gi|227841763|gb|EEJ52046.1| ribonuclease III [Oribacterium sinus F0268]
          Length = 241

 Score =  101 bits (252), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 125/228 (54%), Gaps = 12/228 (5%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNH 62
           S LE+ +GY F ++ LL  ALTH S S    H  + S +RLEFLGD +L L+ STLL++ 
Sbjct: 12  SKLEEDLGYHFQDQKLLLHALTHPSYSNEMGHPKEASNQRLEFLGDAVLELVSSTLLYHK 71

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
               +EG ++    +LV     + VA+ L L+S++ +     ++   F  S+ +D +E++
Sbjct: 72  KPVIQEGRMTKLRAALVCESALAVVAKSLQLSSYLLLGKGEEREGIQFRDSVLSDALEAV 131

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTF 179
           I A+YLDGG++ A  FV    + + L   + +   +DAKT LQE+  AK     EY +  
Sbjct: 132 IGAIYLDGGMKKAECFV----RGKVLSDIEHKTLFQDAKTMLQEYCTAK-RYPLEYDLLE 186

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
            SGP H   + V V+++      G   SK+ AEQ AA   L++  + T
Sbjct: 187 ESGPFHQRFYKVSVKVNEEVYGIGEGSSKKKAEQAAAYFALEKIKVET 234


>gi|170289493|ref|YP_001739731.1| ribonuclease III [Thermotoga sp. RQ2]
 gi|238688867|sp|B1LCY9|RNC_THESQ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|170176996|gb|ACB10048.1| Ribonuclease III [Thermotoga sp. RQ2]
          Length = 240

 Score =  101 bits (252), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 112/218 (51%), Gaps = 11/218 (5%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ-------ESYERLEFLGDRILGLLISTLLFN 61
            +K+ G  F N  LL +AL HSS ++          ES E+LEFLGD +L L +  +L+ 
Sbjct: 12  FQKKTGINFKNEELLFRALCHSSYANEQNQAGRKNVESNEKLEFLGDAVLELFVCEILYK 71

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +  A+ G+L+   ++  S E  + V+R+++L  F+ +     K       SI AD  E+
Sbjct: 72  KYPEAEVGDLARVKSAAASEEVLALVSRKMNLGKFLFLGKGEEKTGGRDRDSILADAFEA 131

Query: 122 LIAALYLDGGIEVAGTFVDK---YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           L+AA+YLD G E      ++   ++ ++ +K G+   D KT LQE   ++  V PEY + 
Sbjct: 132 LLAAIYLDQGYEKIKELFEQEFEFYIEKIMK-GEMLFDYKTALQEIVQSEHKVPPEYVLV 190

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
                D D  F V V + G   A G   +K+ AE+ AA
Sbjct: 191 RTEKNDGDRIFVVEVRVDGKTIATGRGRTKKEAEKEAA 228


>gi|29377554|ref|NP_816708.1| ribonuclease III [Enterococcus faecalis V583]
 gi|255970707|ref|ZP_05421293.1| ribonuclease III [Enterococcus faecalis T1]
 gi|255974283|ref|ZP_05424869.1| ribonuclease III [Enterococcus faecalis T2]
 gi|256618145|ref|ZP_05474991.1| ribonuclease III [Enterococcus faecalis ATCC 4200]
 gi|256761074|ref|ZP_05501654.1| ribonuclease III [Enterococcus faecalis T3]
 gi|256958378|ref|ZP_05562549.1| ribonuclease III [Enterococcus faecalis DS5]
 gi|256960445|ref|ZP_05564616.1| ribonuclease III [Enterococcus faecalis Merz96]
 gi|256962935|ref|ZP_05567106.1| ribonuclease III [Enterococcus faecalis HIP11704]
 gi|257078311|ref|ZP_05572672.1| ribonuclease III [Enterococcus faecalis JH1]
 gi|257080500|ref|ZP_05574861.1| ribonuclease III [Enterococcus faecalis E1Sol]
 gi|257083236|ref|ZP_05577597.1| ribonuclease III [Enterococcus faecalis Fly1]
 gi|257088212|ref|ZP_05582573.1| ribonuclease III [Enterococcus faecalis D6]
 gi|257091337|ref|ZP_05585698.1| ribonuclease III [Enterococcus faecalis CH188]
 gi|257417226|ref|ZP_05594220.1| ribonuclease III [Enterococcus faecalis AR01/DG]
 gi|257417943|ref|ZP_05594937.1| ribonuclease III [Enterococcus faecalis T11]
 gi|257420449|ref|ZP_05597439.1| ribonuclease III [Enterococcus faecalis X98]
 gi|294780225|ref|ZP_06745597.1| ribonuclease III [Enterococcus faecalis PC1.1]
 gi|300861565|ref|ZP_07107649.1| ribonuclease III [Enterococcus faecalis TUSoD Ef11]
 gi|75541427|sp|Q82ZG1|RNC_ENTFA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|29345021|gb|AAO82778.1| ribonuclease III [Enterococcus faecalis V583]
 gi|255961725|gb|EET94201.1| ribonuclease III [Enterococcus faecalis T1]
 gi|255967155|gb|EET97777.1| ribonuclease III [Enterococcus faecalis T2]
 gi|256597672|gb|EEU16848.1| ribonuclease III [Enterococcus faecalis ATCC 4200]
 gi|256682325|gb|EEU22020.1| ribonuclease III [Enterococcus faecalis T3]
 gi|256948874|gb|EEU65506.1| ribonuclease III [Enterococcus faecalis DS5]
 gi|256950941|gb|EEU67573.1| ribonuclease III [Enterococcus faecalis Merz96]
 gi|256953431|gb|EEU70063.1| ribonuclease III [Enterococcus faecalis HIP11704]
 gi|256986341|gb|EEU73643.1| ribonuclease III [Enterococcus faecalis JH1]
 gi|256988530|gb|EEU75832.1| ribonuclease III [Enterococcus faecalis E1Sol]
 gi|256991266|gb|EEU78568.1| ribonuclease III [Enterococcus faecalis Fly1]
 gi|256996242|gb|EEU83544.1| ribonuclease III [Enterococcus faecalis D6]
 gi|257000149|gb|EEU86669.1| ribonuclease III [Enterococcus faecalis CH188]
 gi|257159054|gb|EEU89014.1| ribonuclease III [Enterococcus faecalis ARO1/DG]
 gi|257159771|gb|EEU89731.1| ribonuclease III [Enterococcus faecalis T11]
 gi|257162273|gb|EEU92233.1| ribonuclease III [Enterococcus faecalis X98]
 gi|294452768|gb|EFG21198.1| ribonuclease III [Enterococcus faecalis PC1.1]
 gi|295114417|emb|CBL33054.1| RNAse III [Enterococcus sp. 7L76]
 gi|300849026|gb|EFK76779.1| ribonuclease III [Enterococcus faecalis TUSoD Ef11]
          Length = 230

 Score =  101 bits (252), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 113/221 (51%), Gaps = 7/221 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSI--SHSYQE--SYERLEFLGDRILGLLISTLLFNH 62
           + L++R G  F + +LLE+A THSS    H Y +    ERLEFLGD +L L++S  L+  
Sbjct: 7   TELKERYGIVFHDVNLLEQAFTHSSYVNEHRYLKLSDNERLEFLGDAVLELIVSQYLYLK 66

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG+L+    ++V  ++ ++ A+E    ++I +             S+  D+ E+ 
Sbjct: 67  FPELPEGKLTKMRAAIVREDSLAKFAKECHFDNYILLGKGEEASGGRTRASLLCDLFEAF 126

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180
           + ALYLD  +  A  F++     + + +G F    D KT+LQE    K  V+ EY++   
Sbjct: 127 LGALYLDQKVGAAKKFIEDVIFPK-IDAGAFSHEMDHKTQLQEVLQRKGDVSIEYRLIKE 185

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            GP HD  F   V ++G     G   SK+ AEQ AA   LK
Sbjct: 186 EGPAHDRTFFTEVYMNGELIGLGQGKSKKLAEQDAAERALK 226


>gi|50913818|ref|YP_059790.1| ribonuclease III [Streptococcus pyogenes MGAS10394]
 gi|56808931|ref|ZP_00366639.1| COG0571: dsRNA-specific ribonuclease [Streptococcus pyogenes M49
           591]
 gi|139474237|ref|YP_001128953.1| ribonuclease III [Streptococcus pyogenes str. Manfredo]
 gi|209559002|ref|YP_002285474.1| ribonuclease III [Streptococcus pyogenes NZ131]
 gi|255591218|ref|XP_002535468.1| ribonuclease III, putative [Ricinus communis]
 gi|306827819|ref|ZP_07461089.1| ribonuclease III [Streptococcus pyogenes ATCC 10782]
 gi|73917584|sp|Q5XDA6|RNC_STRP6 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043367|sp|A2RFW8|RNC_STRPG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226741379|sp|B5XKB7|RNC_STRPZ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|50902892|gb|AAT86607.1| Ribonuclease III [Streptococcus pyogenes MGAS10394]
 gi|134272484|emb|CAM30747.1| ribonuclease III [Streptococcus pyogenes str. Manfredo]
 gi|209540203|gb|ACI60779.1| Ribonuclease III [Streptococcus pyogenes NZ131]
 gi|223523016|gb|EEF26915.1| ribonuclease III, putative [Ricinus communis]
 gi|304429989|gb|EFM33028.1| ribonuclease III [Streptococcus pyogenes ATCC 10782]
          Length = 230

 Score =  101 bits (252), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 109/210 (51%), Gaps = 7/210 (3%)

Query: 17  FANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           F + +LLE A TH+S ++ ++       ERLEFLGD +L L+IS  LF  +    EG++S
Sbjct: 16  FNDLTLLETAFTHTSYANEHRLLNVSHNERLEFLGDAVLQLIISEYLFAKYPKKTEGDMS 75

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
              + +V  E+ +  +R     ++I++     K       +I  D+ E+ + AL LD GI
Sbjct: 76  KLRSMIVREESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDTILGDLFEAFLGALLLDKGI 135

Query: 133 EVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           +    F+ +    +  K G F R  D KT LQE+   K  V  +Y+V    GP H  +F 
Sbjct: 136 DAVRRFLKQVMIPQVEK-GNFERVKDYKTCLQEFLQTKGDVVIDYQVISEKGPAHAKQFE 194

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           V + ++G   ++G+  SK+ AEQ AA   L
Sbjct: 195 VSIVVNGAVLSKGLGKSKKLAEQDAAKNAL 224


>gi|255506876|ref|ZP_05382515.1| ribonuclease III [Chlamydia trachomatis D(s)2923]
          Length = 231

 Score =  101 bits (251), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 107/215 (49%), Gaps = 3/215 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDS 65
           +E ++ + F++  LL  ALTH S  + +   +E  ERLEFLGD +LGL+++  LF  F +
Sbjct: 10  IESKLNFTFSHPKLLITALTHPSYRNEFPSAEEDSERLEFLGDAVLGLVVTEHLFLLFPA 69

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG LS    +LV+AE C +  ++L L   + +    +        S  A++ E+++ A
Sbjct: 70  LNEGLLSTTRAALVNAEACFEYTQKLSLGEHLLIGRGEKMQSHRGKISAYANLFEAILGA 129

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           +YLDGG+  A   +      +         + K  LQ++      V P YK       D 
Sbjct: 130 VYLDGGLSPARQIIVPLLPDKESILPLMLVNPKNRLQQFTQQTLKVLPSYKALPWKSEDG 189

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            P + V V ++G    +G   SK+ AE++AA + L
Sbjct: 190 SPGYHVQVFVNGDLWGEGFAGSKKEAEKLAAKQAL 224


>gi|147669550|ref|YP_001214368.1| ribonuclease III [Dehalococcoides sp. BAV1]
 gi|289432809|ref|YP_003462682.1| ribonuclease III [Dehalococcoides sp. GT]
 gi|146270498|gb|ABQ17490.1| RNAse III [Dehalococcoides sp. BAV1]
 gi|288946529|gb|ADC74226.1| ribonuclease III [Dehalococcoides sp. GT]
          Length = 248

 Score =  101 bits (251), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 121/227 (53%), Gaps = 10/227 (4%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSS-----ISHSYQESYERLEFLGDRILGLLISTL 58
           L  + LE  +G  F   SLLE+AL H+S      +HS   S ER+EFLGD +LG++ +  
Sbjct: 13  LDLTELENSLGVKFEQPSLLEQALIHTSWVNENPNHS-SGSNERMEFLGDAVLGVIFADR 71

Query: 59  LFNHFDSAKEGELSVRFNSL-VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
           L++ F   +EG+L+ RF SL V  E+  +VA  ++L  ++ +          F  +  A 
Sbjct: 72  LYHDFPDIQEGDLT-RFRSLLVRRESLVRVALGINLGKYLYLGRGEDVSKGRFKPANLAG 130

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEY 175
             E+++AA+Y+D G++V    + + +K     +++     D K+ LQE   A+  +TP Y
Sbjct: 131 AFEAVLAAIYIDKGMDVTREVIFRLFKTEMERVQTLSSNIDYKSRLQELIQAQLQLTPRY 190

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           ++T  SGP+H+  F   V       A+G   SK+ AE  AA   L++
Sbjct: 191 RITNFSGPEHNRLFIAEVYAEDRVFAEGSGRSKKEAETNAAKVALQQ 237


>gi|227890689|ref|ZP_04008494.1| ribonuclease III [Lactobacillus salivarius ATCC 11741]
 gi|227867627|gb|EEJ75048.1| ribonuclease III [Lactobacillus salivarius ATCC 11741]
          Length = 232

 Score =  101 bits (251), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 112/222 (50%), Gaps = 9/222 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES------YERLEFLGDRILGLLISTLLFNH 62
           L++     F +  LL+ A TH+S  +   E       YER+EFLGD ++ L +S  ++ H
Sbjct: 9   LKRDFDITFKDVDLLDAAFTHASYVNETPERKKKLKYYERIEFLGDAVMQLCVSEYIYEH 68

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +    EG++S    ++V A++ S+ A E     +IR+     K       S+  D+ ES 
Sbjct: 69  YPEMPEGKMSRLRAAMVRADSFSKFAIECHFNEYIRLGKGEEKGNARQRPSLLCDIFESF 128

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180
           I ALYLD G +    F+ K    + L+ G F    D KTELQE          +Y     
Sbjct: 129 IGALYLDQGKDEVVRFISKVIFPK-LELGWFDHMMDNKTELQEVLQQNGECKIKYNEVNV 187

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +GPD++  +T+ V ++     +G   +K+AAEQ+AA + LK+
Sbjct: 188 TGPDNERVYTMNVVVNNEVMGEGTGRTKKAAEQMAAYQALKK 229


>gi|15674631|ref|NP_268805.1| ribonuclease III [Streptococcus pyogenes M1 GAS]
 gi|19745653|ref|NP_606789.1| ribonuclease III [Streptococcus pyogenes MGAS8232]
 gi|21909911|ref|NP_664179.1| ribonuclease III [Streptococcus pyogenes MGAS315]
 gi|28896390|ref|NP_802740.1| ribonuclease III [Streptococcus pyogenes SSI-1]
 gi|71910251|ref|YP_281801.1| ribonuclease III [Streptococcus pyogenes MGAS5005]
 gi|94988068|ref|YP_596169.1| ribonuclease III [Streptococcus pyogenes MGAS9429]
 gi|94991954|ref|YP_600053.1| ribonuclease III [Streptococcus pyogenes MGAS2096]
 gi|94993854|ref|YP_601952.1| ribonuclease III [Streptococcus pyogenes MGAS10750]
 gi|54039244|sp|P66671|RNC_STRP3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|54039245|sp|P66672|RNC_STRP8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|54041616|sp|P66670|RNC_STRP1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043363|sp|Q1JCZ9|RNC_STRPB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043364|sp|Q1JMX4|RNC_STRPC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043366|sp|Q1J7V3|RNC_STRPF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|13621744|gb|AAK33526.1| putative ribonuclease III [Streptococcus pyogenes M1 GAS]
 gi|19747784|gb|AAL97288.1| putative ribonuclease III [Streptococcus pyogenes MGAS8232]
 gi|21904099|gb|AAM78982.1| putative ribonuclease III [Streptococcus pyogenes MGAS315]
 gi|28811641|dbj|BAC64573.1| putative ribonuclease III [Streptococcus pyogenes SSI-1]
 gi|71853033|gb|AAZ51056.1| ribonuclease III [Streptococcus pyogenes MGAS5005]
 gi|94541576|gb|ABF31625.1| ribonuclease III [Streptococcus pyogenes MGAS9429]
 gi|94545462|gb|ABF35509.1| Ribonuclease III [Streptococcus pyogenes MGAS2096]
 gi|94547362|gb|ABF37408.1| Ribonuclease III [Streptococcus pyogenes MGAS10750]
          Length = 230

 Score =  101 bits (251), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 109/210 (51%), Gaps = 7/210 (3%)

Query: 17  FANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           F + +LLE A TH+S ++ ++       ERLEFLGD +L L+IS  LF  +    EG++S
Sbjct: 16  FNDLTLLETAFTHTSYANEHRLLNVSHNERLEFLGDAVLQLIISEYLFAKYPKKTEGDMS 75

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
              + +V  E+ +  +R     ++I++     K       +I  D+ E+ + AL LD GI
Sbjct: 76  KLRSMIVREESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDTILGDLFEAFLGALLLDKGI 135

Query: 133 EVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           +    F+ +    +  K G F R  D KT LQE+   K  V  +Y+V    GP H  +F 
Sbjct: 136 DAVRRFLKQVMIPQVEK-GNFERVKDYKTCLQEFLQTKGDVAIDYQVISEKGPAHAKQFE 194

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           V + ++G   ++G+  SK+ AEQ AA   L
Sbjct: 195 VSIVVNGAVLSKGLGKSKKLAEQDAAKNAL 224


>gi|71903092|ref|YP_279895.1| ribonuclease III [Streptococcus pyogenes MGAS6180]
 gi|90101651|sp|Q48UR6|RNC_STRPM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|71802187|gb|AAX71540.1| ribonuclease III [Streptococcus pyogenes MGAS6180]
          Length = 230

 Score =  101 bits (251), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 109/210 (51%), Gaps = 7/210 (3%)

Query: 17  FANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           F + +LLE A TH+S ++ ++       ERLEFLGD +L L+IS  LF  +    EG++S
Sbjct: 16  FNDLTLLETAFTHTSYANEHRLLNVSHNERLEFLGDAVLQLIISEYLFAKYPKKTEGDMS 75

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
              + +V  E+ +  +R     ++I++     K       +I  D+ E+ + AL LD GI
Sbjct: 76  KLRSMIVREESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDTILGDLFEAFLGALLLDKGI 135

Query: 133 EVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           +    F+ +    +  K G F   RD KT LQE+   K  V  +Y+V    GP H  +F 
Sbjct: 136 DAVRRFLKQVMIPQVEK-GNFERVRDYKTCLQEFLQTKGDVAIDYQVISEKGPAHAKQFE 194

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           V + ++G   ++G+  SK+ AEQ AA   L
Sbjct: 195 VSIVVNGAVLSKGLGKSKKLAEQDAAKNAL 224


>gi|225868184|ref|YP_002744132.1| ribonuclease III [Streptococcus equi subsp. zooepidemicus]
 gi|259646553|sp|C0MCR4|RNC_STRS7 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|225701460|emb|CAW98596.1| ribonuclease III [Streptococcus equi subsp. zooepidemicus]
          Length = 230

 Score =  101 bits (251), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 112/218 (51%), Gaps = 7/218 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
           LE      F ++ LLE A TH+S ++ ++       ERLEFLGD +L L+IS  LF  + 
Sbjct: 8   LENSFNIRFDDKRLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIISEYLFAKYP 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG++S   +++V  E+ +  +R     ++I++     K       +I  D+ E+ + 
Sbjct: 68  KQTEGDMSKLRSTIVREESLAGFSRYCSFDAYIKLGKGEEKSGGRHRDTILGDLFEAFLG 127

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           AL LD GIE    F+++    + ++ G F   +D KT LQE   AK  V  +Y+V   +G
Sbjct: 128 ALLLDKGIEEVRRFLNQVMIPQ-VEQGTFEKVKDYKTCLQELLQAKGDVVIDYQVISETG 186

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           P H  +F V V +     ++G   SK+ AEQ AA   L
Sbjct: 187 PAHAKQFEVAVLVDEDRLSKGTGRSKKLAEQDAAKNAL 224


>gi|73748788|ref|YP_308027.1| ribonuclease III [Dehalococcoides sp. CBDB1]
 gi|90101624|sp|Q3ZXY9|RNC_DEHSC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|73660504|emb|CAI83111.1| ribonuclease III [Dehalococcoides sp. CBDB1]
          Length = 237

 Score =  101 bits (251), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 121/227 (53%), Gaps = 10/227 (4%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSS-----ISHSYQESYERLEFLGDRILGLLISTL 58
           L  + LE  +G  F   SLLE+AL H+S      +HS   S ER+EFLGD +LG++ +  
Sbjct: 2   LDLTELENSLGVKFEQPSLLEQALIHTSWVNENPNHS-SGSNERMEFLGDAVLGVIFADR 60

Query: 59  LFNHFDSAKEGELSVRFNSL-VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
           L++ F   +EG+L+ RF SL V  E+  +VA  ++L  ++ +          F  +  A 
Sbjct: 61  LYHDFPDIQEGDLT-RFRSLLVRRESLVRVALGINLGKYLYLGRGEDVSKGRFKPANLAG 119

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEY 175
             E+++AA+Y+D G++V    + + +K     +++     D K+ LQE   A+  +TP Y
Sbjct: 120 AFEAVLAAIYIDKGMDVTREVIFRLFKTEMERVQTLSSNIDYKSRLQELIQAQLQLTPRY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           ++T  SGP+H+  F   V       A+G   SK+ AE  AA   L++
Sbjct: 180 RITNFSGPEHNRLFIAEVYAEDRVFAEGSGRSKKEAETNAAKVALQQ 226


>gi|114331755|ref|YP_747977.1| ribonuclease III [Nitrosomonas eutropha C91]
 gi|122313494|sp|Q0AF70|RNC_NITEC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|114308769|gb|ABI60012.1| RNAse III [Nitrosomonas eutropha C91]
          Length = 245

 Score =  101 bits (251), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 104/221 (47%), Gaps = 10/221 (4%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y+   +++GY F    LL++ALTH S+      + ERLEFLGD +L   +STLLF  F  
Sbjct: 24  YTVFSQKLGYTFKQPDLLQEALTHRSLGFP---NNERLEFLGDSVLNCAVSTLLFKRFLL 80

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+L+    + V+ +   Q+A  L +   I +    RK       SI A+ +E++I A
Sbjct: 81  LPEGDLTRLRANFVNQDALHQLASALGIGELILLGDGERKSGGHQRPSILANAMEAIIGA 140

Query: 126 LYLDGGIE----VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +YL+ G E    V     D    Q  L    F +D KT LQE+  ++    PEY      
Sbjct: 141 IYLESGFEKVDQVIVALYDPLLNQ--LDPDLFGKDPKTLLQEYLQSRKVDLPEYSTLLTR 198

Query: 182 GPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221
           G  H   F V   I   A    G   S+R AEQ AA    K
Sbjct: 199 GDAHAQVFHVECVIPEFAIRTSGEGTSRRRAEQEAARRAYK 239


>gi|253997000|ref|YP_003049064.1| ribonuclease III [Methylotenera mobilis JLW8]
 gi|253983679|gb|ACT48537.1| ribonuclease III [Methylotenera mobilis JLW8]
          Length = 230

 Score =  101 bits (251), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 67/185 (36%), Positives = 95/185 (51%), Gaps = 5/185 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L +R+ + F N SLL +ALTH S +    ++ ERLEFLGD  L  +I+  L+  F    E
Sbjct: 6   LLRRLSHQFVNESLLTQALTHRSYA---GQNNERLEFLGDGALNFIIAHQLYQRFPKLAE 62

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS     LV   T S++A  L+L   + +     K       SI AD +E++I A+YL
Sbjct: 63  GDLSRLRAQLVKEATLSEIALSLNLGDALLLGEGELKSAGWRRPSILADALEAIIGAVYL 122

Query: 129 DGGIEVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D G E A TFV   +  K   +      +D K+ LQE   ++    PEY V   SG  H+
Sbjct: 123 DSGFEAAQTFVLGLYAGKLETIDPKVIDKDPKSLLQELLQSRKIAVPEYTVIHTSGEAHE 182

Query: 187 PRFTV 191
            +F V
Sbjct: 183 QKFVV 187


>gi|195978496|ref|YP_002123740.1| ribonuclease III [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195975201|gb|ACG62727.1| ribonuclease III Rnc [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 231

 Score =  101 bits (251), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 112/218 (51%), Gaps = 7/218 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
           LE      F ++ LLE A TH+S ++ ++       ERLEFLGD +L L+IS  LF  + 
Sbjct: 9   LENSFNIRFDDKRLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIISEYLFAKYP 68

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG++S   +++V  E+ +  +R     ++I++     K       +I  D+ E+ + 
Sbjct: 69  KQTEGDMSKLRSTIVREESLAGFSRYCSFDAYIKLGKGEEKSGGRHRETILGDLFEAFLG 128

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           AL LD GIE    F+++    + ++ G F   +D KT LQE   AK  V  +Y+V   +G
Sbjct: 129 ALLLDKGIEEVRRFLNQVMIPQ-VEQGTFEKVKDYKTCLQELLQAKGDVVIDYQVISETG 187

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           P H  +F V V +     ++G   SK+ AEQ AA   L
Sbjct: 188 PAHAKQFEVAVLVDEDRLSKGTGRSKKLAEQDAAKNAL 225


>gi|50365047|ref|YP_053472.1| ribonuclease III, dsRNA-specific ribonuclease [Mesoplasma florum
           L1]
 gi|81391925|sp|Q6F1N5|RNC_MESFL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|50363603|gb|AAT75588.1| ribonuclease III, dsRNA-specific ribonuclease [Mesoplasma florum
           L1]
          Length = 231

 Score =  101 bits (251), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 115/217 (52%), Gaps = 10/217 (4%)

Query: 14  GYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71
           G    +  +   ALTH+S ++    +E+Y+RLEFLGD +L + +S  L+ +F +A EG+L
Sbjct: 11  GIKINDSKIFSTALTHNSYANETKTKETYQRLEFLGDAVLQMYVSKFLYLNFTNAPEGKL 70

Query: 72  SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131
           +   + +V  ET S++A+ +DL   IR+     K       SI +DV E++ AA+YLD  
Sbjct: 71  TKTRSDIVRQETLSEIAKMIDLGKIIRLGQGEIKSKGYEKPSILSDVYEAVTAAIYLDQT 130

Query: 132 IEVAGTFVD----KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
            EV  +++     KY ++   K  +   D K+ELQE   A+     EY+V  +   + D 
Sbjct: 131 EEVLISWIKSTIFKYIEKNDYK--ELNHDYKSELQEIIQAEIRSDLEYRVESQKHIEKDN 188

Query: 188 R--FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +  +TV V + G     G   SK+ A Q AA + L +
Sbjct: 189 KIEYTVSVNLDGKKYGIGTGFSKQEASQNAAKDCLNK 225


>gi|42766|emb|CAA26504.1| unnamed protein product [Escherichia coli]
          Length = 227

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 95/170 (55%), Gaps = 5/170 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKHNE---RLEFLGDSILSYVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAK 168
           +LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +
Sbjct: 118 ALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGR 167


>gi|225870877|ref|YP_002746824.1| ribonuclease III [Streptococcus equi subsp. equi 4047]
 gi|254807900|sp|C0M8Y3|RNC_STRE4 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|225700281|emb|CAW94534.1| ribonuclease III [Streptococcus equi subsp. equi 4047]
          Length = 230

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 112/218 (51%), Gaps = 7/218 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
           LE      F ++ LLE A TH+S ++ ++       ERLEFLGD +L L+IS  LF  + 
Sbjct: 8   LENSFNIRFDDKRLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIISEYLFAKYP 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG++S   +++V  E+ +  +R     ++I++     K       +I  D+ E+ + 
Sbjct: 68  KQTEGDMSKLRSTIVREESLAGFSRYCSFDAYIKLGRGEEKSGGRHRDTILGDLFEAFLG 127

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           AL LD GIE    F+++    + ++ G F   +D KT LQE   AK  V  +Y+V   +G
Sbjct: 128 ALLLDKGIEEVRRFLNQVMIPQ-VEQGTFEKVKDYKTCLQELLQAKGDVVIDYQVISETG 186

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           P H  +F V V +     ++G   SK+ AEQ AA   L
Sbjct: 187 PAHAKQFEVAVLVGEDHLSKGTGRSKKLAEQDAAKNAL 224


>gi|319946572|ref|ZP_08020806.1| ribonuclease III [Streptococcus australis ATCC 700641]
 gi|319746620|gb|EFV98879.1| ribonuclease III [Streptococcus australis ATCC 700641]
          Length = 241

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/209 (33%), Positives = 107/209 (51%), Gaps = 8/209 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M AL Y+ L ++    F +  LLE A TH+S ++ ++       ERLEFLGD IL L+IS
Sbjct: 9   MQAL-YNLLAEKFRLTFDDTELLETAFTHTSYANEHRLLKISHNERLEFLGDAILQLVIS 67

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  + S  EG+LS   + +V  E+ +  +R+     FI++     K       +I  
Sbjct: 68  EYLFALYPSKPEGDLSKMRSMIVREESLAGFSRDCGFDQFIKLGKGEEKSGGRNRDTILG 127

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D+ E+ + AL LD G+E    F+ +    + +++G+F +  D KT LQE       V   
Sbjct: 128 DLFEAFLGALLLDKGVETVRDFIQQVMIPK-VEAGQFEQVIDYKTRLQEILQIHGDVLIT 186

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQG 203
           Y+VT  SGP H   F V V ++G    QG
Sbjct: 187 YEVTSESGPAHAKEFEVQVSVNGKIIGQG 215


>gi|166154508|ref|YP_001654626.1| ribonuclease III [Chlamydia trachomatis 434/Bu]
 gi|255348658|ref|ZP_05380665.1| ribonuclease III [Chlamydia trachomatis 70]
 gi|255503198|ref|ZP_05381588.1| ribonuclease III [Chlamydia trachomatis 70s]
 gi|301335768|ref|ZP_07224012.1| ribonuclease III [Chlamydia trachomatis L2tet1]
 gi|238687367|sp|B0B7L3|RNC_CHLT2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|165930496|emb|CAP03989.1| ribonuclease III [Chlamydia trachomatis 434/Bu]
 gi|289525336|emb|CBJ14812.1| ribonuclease III [Chlamydia trachomatis Sweden2]
 gi|296434887|gb|ADH17065.1| ribonuclease III [Chlamydia trachomatis E/150]
 gi|296438607|gb|ADH20760.1| ribonuclease III [Chlamydia trachomatis E/11023]
          Length = 231

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 107/215 (49%), Gaps = 3/215 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDS 65
           +E ++ + F++  LL  ALTH S  + +   +E  ERLEFLGD +LGL+++  LF  F +
Sbjct: 10  IESKLNFTFSHPRLLITALTHPSYRNEFPSAEEDSERLEFLGDAVLGLVVTEHLFLLFPA 69

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG LS    +LV+AE C +  ++L L   + +    +        S  A++ E+++ A
Sbjct: 70  LNEGLLSTTRAALVNAEACFEYTQKLSLGEHLLIGRGEKMQSHRGKISAYANLFEAILGA 129

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           +YLDGG+  A   +      +         + K  LQ++      V P YK       D 
Sbjct: 130 VYLDGGLSPARQIIVPLLPDKESILPLMLVNPKNRLQQFTQQTLKVLPSYKALPWKSEDG 189

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            P + V V ++G    +G   SK+ AE++AA + L
Sbjct: 190 SPGYHVQVFVNGDLWGEGFAGSKKEAEKLAAKQAL 224


>gi|307150264|ref|YP_003885648.1| ribonuclease III [Cyanothece sp. PCC 7822]
 gi|306980492|gb|ADN12373.1| ribonuclease III [Cyanothece sp. PCC 7822]
          Length = 228

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 105/221 (47%), Gaps = 12/221 (5%)

Query: 17  FANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           F N+ L   ALTH S  + +    E  ERLEFLGD IL  +    L+  +    E +L+ 
Sbjct: 7   FKNQQLWLCALTHRSYINEHSGINEHNERLEFLGDAILAFVAGEFLYQRYPHLSEAQLTR 66

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
               LV     ++ A +L +   +R+     KD      ++ +D  E++I A YLD G++
Sbjct: 67  LRAKLVDETQLARFAVQLGIGELMRLGKGAIKDGGRENPALLSDTFEAIIGAYYLDAGVD 126

Query: 134 VAGTFVDKYWK---------QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
               FV   ++         Q  + + K   DAK   Q+WA A+F   PEY +   SGPD
Sbjct: 127 AVRNFVHPLFQSVADILMVSQSEVATTKNLLDAKNRFQQWALAEFSQNPEYIIIEESGPD 186

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           H   FT  V++ G+    G    K+ A + AA E LK+ G+
Sbjct: 187 HAKEFTAQVKVQGIVYGVGRGRRKQEATKAAAEEALKKVGL 227


>gi|323526859|ref|YP_004229012.1| ribonuclease III [Burkholderia sp. CCGE1001]
 gi|323383861|gb|ADX55952.1| ribonuclease III [Burkholderia sp. CCGE1001]
          Length = 475

 Score =  100 bits (250), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/195 (34%), Positives = 102/195 (52%), Gaps = 7/195 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S LE R+ Y F N  LL +ALTH S S ++ E   RLEFLGD +L   ++ LLF  F   
Sbjct: 4   SPLESRLRYEFRNAELLRQALTHRSHSSTHNE---RLEFLGDSVLNCAVAALLFQRFGKL 60

Query: 67  KEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
            EG+LS VR N LV  ++  ++A+ L+++  +R+     +       SI AD +E+++ A
Sbjct: 61  DEGDLSRVRAN-LVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADTLEAVLGA 119

Query: 126 LYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           ++LDGG E A T + + +      +      +DAKT LQE+        P Y V    G 
Sbjct: 120 VFLDGGFEAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGA 179

Query: 184 DHDPRFTVVVEISGL 198
            H+ +F V   +  L
Sbjct: 180 AHNQQFEVECTVPKL 194


>gi|307730527|ref|YP_003907751.1| ribonuclease III [Burkholderia sp. CCGE1003]
 gi|307585062|gb|ADN58460.1| ribonuclease III [Burkholderia sp. CCGE1003]
          Length = 420

 Score =  100 bits (250), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/195 (34%), Positives = 102/195 (52%), Gaps = 7/195 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S LE R+ Y F N  LL +ALTH S S ++ E   RLEFLGD +L   ++ LLF  F   
Sbjct: 4   SPLESRLRYEFRNAELLRQALTHRSHSSTHNE---RLEFLGDSVLNCAVAALLFQRFGKL 60

Query: 67  KEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
            EG+LS VR N LV  ++  ++A+ L+++  +R+     +       SI AD +E+++ A
Sbjct: 61  DEGDLSRVRAN-LVKQQSLYELAQALNISEGLRLGEGELRSGGFRRPSILADTLEAVLGA 119

Query: 126 LYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           ++LDGG E A T + + +      +      +DAKT LQE+        P Y V    G 
Sbjct: 120 VFLDGGFEAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGA 179

Query: 184 DHDPRFTVVVEISGL 198
            H+ +F V   +  L
Sbjct: 180 AHNQQFEVECTVPKL 194


>gi|237740802|ref|ZP_04571283.1| ribonuclease III [Fusobacterium sp. 2_1_31]
 gi|229422819|gb|EEO37866.1| ribonuclease III [Fusobacterium sp. 2_1_31]
          Length = 234

 Score =  100 bits (250), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 103/191 (53%), Gaps = 6/191 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           LE ++ Y F NR+LL+ AL H S+ +  +E    + ERLE LGD +L L+++  L+ ++ 
Sbjct: 7   LEHKLNYYFNNRNLLKTALLHKSLGNEKKEYKNQNNERLELLGDAVLDLIVAEYLYRNYK 66

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           SA EG ++     +VS    ++++R++DL  F+ +S            SI AD  E+++ 
Sbjct: 67  SASEGTIAKLKAMIVSEPILAKISRQIDLGKFLMLSKGEILSGGRNRESILADAFEAVLG 126

Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+Y+D  +E A +F   + +Q    ++  +   D K+ LQE+    F   P Y++    G
Sbjct: 127 AVYMDSNLEEARSFALGHIEQYITHIEEDEDILDFKSILQEYVQKNFKTVPTYELISEKG 186

Query: 183 PDHDPRFTVVV 193
           PDH   F + V
Sbjct: 187 PDHMKEFEIQV 197


>gi|56419727|ref|YP_147045.1| ribonuclease III [Geobacillus kaustophilus HTA426]
 gi|81347639|sp|Q5L0Q3|RNC_GEOKA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|56379569|dbj|BAD75477.1| dsRNA-specific ribonuclease [Geobacillus kaustophilus HTA426]
          Length = 246

 Score =  100 bits (250), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 107/223 (47%), Gaps = 7/223 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++  L+ +IG  F N  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF
Sbjct: 17  KFQELQNKIGITFRNEKLLIQAFTHSSYVNEHRRRLHEDNERLEFLGDAVLELTVSQYLF 76

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG+L+    ++V   +  + A  L     + +             ++ ADV E
Sbjct: 77  QKFPHMSEGQLTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFE 136

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178
           + I ALYLD G++    F++K    + +  G F    D K++LQE        T EY + 
Sbjct: 137 AFIGALYLDQGMDAVIRFLEKTMFPK-IDEGAFSHVMDFKSQLQELVQRDGSGTLEYAIL 195

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              GP H+  F   V ++G     G+  SK+ AEQ AA   L+
Sbjct: 196 EEKGPAHNKEFVARVALNGQELGIGVGRSKKEAEQHAAQMALE 238


>gi|325127806|gb|EGC50714.1| ribonuclease III [Neisseria meningitidis N1568]
          Length = 239

 Score =  100 bits (250), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 116/220 (52%), Gaps = 8/220 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++KR+GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F  
Sbjct: 11  HAAIQKRLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 67

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 68  LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +  D     A   V   +  R ++   F+   +D KT LQE   A+    P+Y++  + G
Sbjct: 128 VSFDADFNTAEKVVRHLFADR-VRCADFQNQAKDGKTALQEALQARRFALPKYRIEEQIG 186

Query: 183 PDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221
             +D  F V  ++  L    +    S++AAEQ AA E L+
Sbjct: 187 HANDSMFVVSCDLGELGFVCRAKGTSRKAAEQSAAKEALQ 226


>gi|222444593|ref|ZP_03607108.1| hypothetical protein METSMIALI_00205 [Methanobrevibacter smithii
           DSM 2375]
 gi|261350869|ref|ZP_05976286.1| ribonuclease III [Methanobrevibacter smithii DSM 2374]
 gi|222434158|gb|EEE41323.1| hypothetical protein METSMIALI_00205 [Methanobrevibacter smithii
           DSM 2375]
 gi|288860206|gb|EFC92504.1| ribonuclease III [Methanobrevibacter smithii DSM 2374]
          Length = 223

 Score =  100 bits (250), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 103/206 (50%), Gaps = 3/206 (1%)

Query: 19  NRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           +R L + A TH S    H    +YERLEFLGD +L +++S  L+  +   +EG+L+    
Sbjct: 13  DRHLYDVAFTHGSYGTKHGLDYTYERLEFLGDSVLNMIVSEYLYKQYPDYEEGKLTKLRA 72

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           + V        + EL L   I++  D  K   + + SI ADV ES + A++LD GIE A 
Sbjct: 73  NYVCQTALIYYSHELGLDKHIKIYGDDSKITENEVLSITADVFESFLGAIFLDQGIEFAK 132

Query: 137 TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
            ++ K           F  D K+ ++E+  A+  V  EYK+    G  H+  F + + I 
Sbjct: 133 DYISKIIFPYIDAKKVFFFDYKSVIKEYGDAQ-EVDIEYKIIDECGVPHNKTFIISILID 191

Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLKR 222
           G     G   +K+ AEQ A+ + +K+
Sbjct: 192 GKEMGVGKGKNKKEAEQAASKQAMKK 217


>gi|190575414|ref|YP_001973259.1| ribonuclease III [Stenotrophomonas maltophilia K279a]
 gi|190013336|emb|CAQ46970.1| putative ribonuclease III [Stenotrophomonas maltophilia K279a]
          Length = 226

 Score =  100 bits (250), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/214 (35%), Positives = 115/214 (53%), Gaps = 7/214 (3%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           IG+AF++ +LL++ALTH S    + E   RLEFLGD I+ ++ +  L+  +  A EG ++
Sbjct: 12  IGHAFSDPALLKQALTHRSAGAPHNE---RLEFLGDSIVNMMAAEALYRRWPKADEGAMT 68

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                LV     + +AR L L   + +     K       SI AD VE+++AA+YLD G 
Sbjct: 69  RARAELVREGALAVIARTLQLGERLTLGPGEMKSGGHRRDSILADAVEAVVAAIYLDAGF 128

Query: 133 EVAGTFVDKYWKQ--RALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
           E     V  ++     AL  SG+  +D KT LQEW  A+    P+Y++   SG DH   F
Sbjct: 129 EACRAVVLPWFSASIEALPASGRPEKDPKTRLQEWLQARQKALPQYELVSESGDDHAKHF 188

Query: 190 TVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKR 222
            V   ++  A + +G   S+R AEQ AAA VL++
Sbjct: 189 RVRCNVADPAASTEGEGASRRLAEQQAAAAVLEQ 222


>gi|118498035|ref|YP_899085.1| ribonuclease III [Francisella tularensis subsp. novicida U112]
 gi|194323260|ref|ZP_03057044.1| ribonuclease III [Francisella tularensis subsp. novicida FTE]
 gi|208779555|ref|ZP_03246900.1| ribonuclease III [Francisella novicida FTG]
 gi|254373391|ref|ZP_04988879.1| ribonuclease III [Francisella tularensis subsp. novicida GA99-3549]
 gi|189043316|sp|A0Q7W6|RNC_FRATN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|118423941|gb|ABK90331.1| ribonuclease III [Francisella novicida U112]
 gi|151571117|gb|EDN36771.1| ribonuclease III [Francisella novicida GA99-3549]
 gi|194322624|gb|EDX20104.1| ribonuclease III [Francisella tularensis subsp. novicida FTE]
 gi|208744516|gb|EDZ90815.1| ribonuclease III [Francisella novicida FTG]
 gi|332678757|gb|AEE87886.1| Ribonuclease III [Francisella cf. novicida Fx1]
          Length = 230

 Score =  100 bits (250), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 119/230 (51%), Gaps = 18/230 (7%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           YS     +GY F + +LL +ALTH S +   +++YERLEFLGD +L  +I+ +L+  F  
Sbjct: 5   YSRFYNILGYNFKDYTLLIRALTHRSKT---KKNYERLEFLGDSVLSFVIAEVLYKQFTD 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS   + LV   T +Q+A  L +  +I + +   +        I  DV E++I A
Sbjct: 62  LAEGKLSQLRSKLVKGTTLAQLASSLKMDEYIILGAS--EQGGHKREKILEDVFEAVIGA 119

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR----RDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +YLD         + K W Q  + S        +D+K++LQE         PEY +    
Sbjct: 120 IYLDSDFATVKKVILK-WYQPIISSINLDTIKVKDSKSKLQEILLQNALSLPEYSIETID 178

Query: 182 GPDHDPRFTVVV---EISGLAPAQGMDCSKRAAEQVAA---AEVLKREGI 225
           G DH+ +FTVV    +++    AQG   S++ AEQ AA    E+L ++G+
Sbjct: 179 GKDHEQQFTVVAMSKDLNLRVKAQG--TSRKKAEQKAAEKMIEMLSQQGL 226


>gi|295677176|ref|YP_003605700.1| ribonuclease III [Burkholderia sp. CCGE1002]
 gi|295437019|gb|ADG16189.1| ribonuclease III [Burkholderia sp. CCGE1002]
          Length = 426

 Score =  100 bits (250), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/198 (33%), Positives = 103/198 (52%), Gaps = 7/198 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++ E   RLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSPLESRLRYEFRNAELLRQALTHRSHSSTHNE---RLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
               EG+LS VR N LV  ++  ++A+ L+++  +R+     +       SI AD +E++
Sbjct: 58  GKLDEGDLSRVRAN-LVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADTLEAV 116

Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           + A++LDGG + A T + + +      +      +DAKT LQE+        P Y V   
Sbjct: 117 LGAIFLDGGFDAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT 176

Query: 181 SGPDHDPRFTVVVEISGL 198
            G  H+ +F V   +  L
Sbjct: 177 HGAAHNQQFEVECTVPKL 194


>gi|148642236|ref|YP_001272749.1| ribonuclease III (dsRNA-specific), Rnc [Methanobrevibacter smithii
           ATCC 35061]
 gi|148551253|gb|ABQ86381.1| ribonuclease III (dsRNA-specific), Rnc [Methanobrevibacter smithii
           ATCC 35061]
          Length = 223

 Score =  100 bits (250), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 103/206 (50%), Gaps = 3/206 (1%)

Query: 19  NRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           +R L + A TH S    H    +YERLEFLGD +L +++S  L+  +   +EG+L+    
Sbjct: 13  DRHLYDVAFTHGSYGTKHGLDYTYERLEFLGDSVLNMIVSEYLYKQYPDYEEGKLTKLRA 72

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           + V        + EL L   I++  D  K   + + SI ADV ES + A++LD GIE A 
Sbjct: 73  NYVCQTALIYYSHELGLDKHIKIYGDDSKITENEVLSITADVFESFLGAIFLDQGIEFAK 132

Query: 137 TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
            ++ K           F  D K+ ++E+  A+  V  EYK+    G  H+  F + + I 
Sbjct: 133 DYISKIIFPYIDAKKVFFFDYKSVIKEYGDAQ-EVDIEYKIIDECGVPHNKTFIISILID 191

Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLKR 222
           G     G   +K+ AEQ A+ + +K+
Sbjct: 192 GKEMGVGKGKNKKEAEQAASKQAMKK 217


>gi|319892231|ref|YP_004149106.1| Ribonuclease III [Staphylococcus pseudintermedius HKU10-03]
 gi|317161927|gb|ADV05470.1| Ribonuclease III [Staphylococcus pseudintermedius HKU10-03]
 gi|323464672|gb|ADX76825.1| ribonuclease III [Staphylococcus pseudintermedius ED99]
          Length = 243

 Score =  100 bits (250), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/216 (31%), Positives = 108/216 (50%), Gaps = 11/216 (5%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           K +   + N SL ++A +HSS  + +     E  ERLEFLGD +L L +S  LF+ F   
Sbjct: 22  KALNLTYDNMSLYQQAFSHSSFINDFNMDRTEHNERLEFLGDAVLELTVSRYLFDAFPKL 81

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGEL+    ++V   +    A+ ++L   I +     K       S+ ADV E+ + AL
Sbjct: 82  PEGELTKMRANIVCEPSLVVFAQHINLMPLILLGKGEEKTGGRTRPSLVADVFEAFVGAL 141

Query: 127 YLDGGIEVAGTFVD----KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           YLD G+E    F +     + K R L       D KT+ QE+ H  +    +Y+V    G
Sbjct: 142 YLDQGLEAVWQFAEAVIFPHVKGRQLIG---VVDFKTKFQEYVHQNYLGVIKYRVAKEEG 198

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           P H+  FT  + ++G A ++G   +K+ +EQ AA +
Sbjct: 199 PAHNKTFTSEILLNGEAVSRGEGRTKKESEQKAAEQ 234


>gi|294787661|ref|ZP_06752905.1| ribonuclease III [Simonsiella muelleri ATCC 29453]
 gi|294483954|gb|EFG31637.1| ribonuclease III [Simonsiella muelleri ATCC 29453]
          Length = 235

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 114/223 (51%), Gaps = 14/223 (6%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L++ I + F N +L+++ALTH S S    ++YERLEF+GD IL  +++ +L+  F    E
Sbjct: 13  LQQEINFLFKNPNLIQQALTHRSYSS---QNYERLEFIGDSILNYVVAKMLYEAFPKLPE 69

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G LS     LV   T + +AR+L +   + +     K       SI AD +E+L AA+ L
Sbjct: 70  GRLSPLRAQLVKEATLADIARQLHIGDALFLGVGELKSGGHDRASILADALEALFAAISL 129

Query: 129 DGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D     +   + K + Q  + L + +  +DAKT LQE    +    P+Y++  ++G  +D
Sbjct: 130 DSDFATSEKIIRKIFSQKIKELDTSQSAKDAKTSLQELLQGQKLTLPKYRIDKQTGEGND 189

Query: 187 PRFTVVVEISGLAP---AQGMDCSKRAAEQVAAAEVLKREGIW 226
             F V  ++  L     AQ    S+R AEQ  A + +    +W
Sbjct: 190 AIFDVSCDLGELGKIFYAQA--SSRRTAEQECAKQAI----VW 226


>gi|146281615|ref|YP_001171768.1| ribonuclease III [Pseudomonas stutzeri A1501]
 gi|145569820|gb|ABP78926.1| ribonuclease III [Pseudomonas stutzeri A1501]
          Length = 208

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/203 (37%), Positives = 104/203 (51%), Gaps = 6/203 (2%)

Query: 26  ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85
           ALTH S +     + ERLEFLGD IL  +    LFNHF  A+EG+LS     LV  ET +
Sbjct: 4   ALTHRSYA---GRNNERLEFLGDAILNFVAGEALFNHFPQAREGQLSRLRARLVKGETLA 60

Query: 86  QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145
            +AR  +L   +R+ S   K       SI AD +E+LI A+YLD G++VA   V  +   
Sbjct: 61  VLARGFELGDHLRLGSGELKSGGYRRESILADTLEALIGAIYLDAGMDVARERVIAWLAN 120

Query: 146 --RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA-PAQ 202
             + L      +D KT LQE+  ++    P Y+V    G  H   F V  +++ L     
Sbjct: 121 ELQGLTLVDTNKDPKTRLQEFLQSRACELPRYEVVDIQGEPHCRTFFVECQVALLNDKTH 180

Query: 203 GMDCSKRAAEQVAAAEVLKREGI 225
           G   S+R AEQVAAA  L   G+
Sbjct: 181 GQGASRRIAEQVAAAAALIALGV 203


>gi|326382852|ref|ZP_08204542.1| ribonuclease III [Gordonia neofelifaecis NRRL B-59395]
 gi|326198442|gb|EGD55626.1| ribonuclease III [Gordonia neofelifaecis NRRL B-59395]
          Length = 234

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/202 (35%), Positives = 108/202 (53%), Gaps = 8/202 (3%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL  ALTH S ++      + ERLEFLGD +LG++++  L+  F    EGEL+    S+V
Sbjct: 22  LLTLALTHRSYAYENGGLPTNERLEFLGDAVLGVVVTERLYVGFPDRPEGELAKIRASVV 81

Query: 80  SAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           +    + VAR L    L + +R+             SI AD +ESL  A++LD GIEVA 
Sbjct: 82  NMHALADVARGLGEGGLGAHLRLGRGEELTGGRDKASILADGLESLFGAIFLDHGIEVAK 141

Query: 137 TFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
           T +   ++   ++SG+     D KT LQE +  +    P+Y+++  +GPDH+  FT V  
Sbjct: 142 TVIMNLFEPIIVRSGRLGAGLDWKTSLQELSAERSLGQPQYQIS-STGPDHNKEFTAVAV 200

Query: 195 ISGLAPAQGMDCSKRAAEQVAA 216
           + G     G   +K+ AEQ AA
Sbjct: 201 VGGDELGAGTGKTKKEAEQRAA 222


>gi|209517222|ref|ZP_03266067.1| Ribonuclease III [Burkholderia sp. H160]
 gi|209502358|gb|EEA02369.1| Ribonuclease III [Burkholderia sp. H160]
          Length = 423

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/198 (33%), Positives = 103/198 (52%), Gaps = 7/198 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++ E   RLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSPLESRLRYEFRNAELLRQALTHRSHSSTHNE---RLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
               EG+LS VR N LV  ++  ++A+ L+++  +R+     +       SI AD +E++
Sbjct: 58  GKLDEGDLSRVRAN-LVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADTLEAV 116

Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           + A++LDGG + A T + + +      +      +DAKT LQE+        P Y V   
Sbjct: 117 LGAIFLDGGFDAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT 176

Query: 181 SGPDHDPRFTVVVEISGL 198
            G  H+ +F V   +  L
Sbjct: 177 HGAAHNQQFEVECTVPKL 194


>gi|187924875|ref|YP_001896517.1| ribonuclease III [Burkholderia phytofirmans PsJN]
 gi|187716069|gb|ACD17293.1| Ribonuclease III [Burkholderia phytofirmans PsJN]
          Length = 418

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/198 (33%), Positives = 103/198 (52%), Gaps = 7/198 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++ E   RLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSPLESRLRYEFRNAELLRQALTHRSHSSTHNE---RLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
               EG+LS VR N LV  ++  ++A+ L+++  +R+     +       SI AD +E++
Sbjct: 58  GKLDEGDLSRVRAN-LVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADTLEAV 116

Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           + A++LDGG + A T + + +      +      +DAKT LQE+        P Y V   
Sbjct: 117 LGAVFLDGGFDAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT 176

Query: 181 SGPDHDPRFTVVVEISGL 198
            G  H+ +F V   +  L
Sbjct: 177 HGAAHNQQFEVECTVPKL 194


>gi|288817568|ref|YP_003431915.1| ribonuclease III [Hydrogenobacter thermophilus TK-6]
 gi|288786967|dbj|BAI68714.1| ribonuclease III [Hydrogenobacter thermophilus TK-6]
 gi|308751168|gb|ADO44651.1| ribonuclease III [Hydrogenobacter thermophilus TK-6]
          Length = 232

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/215 (35%), Positives = 115/215 (53%), Gaps = 11/215 (5%)

Query: 14  GYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           GY F ++ LLE+ALTH S +     +SYE LEFLGD ++ L +  +L   F  AKEG+L+
Sbjct: 17  GYTFRDKKLLEQALTHKSYAVEKGVKSYETLEFLGDALINLFVVDILLQEFPQAKEGQLA 76

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                 VS E   Q+A+EL+L  ++ +    +K       SI  D  ESL  A+Y+D G 
Sbjct: 77  PMKAFFVSEEFLHQLAQELELEKYLLLGG--KKGKFKVNVSILGDAFESLWGAIYIDTGR 134

Query: 133 EVAGT--FVDKYWKQRAL---KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           +   T    ++ +K R +   +S  +++D KT LQE    ++   P Y+V   SGP H  
Sbjct: 135 DTNFTRSLFERLYKNRIITMARSSDYKKDYKTILQEITQKRWKERPTYRVVSVSGPQHGK 194

Query: 188 RFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLK 221
            F V   +  + A A G   +K+ AEQ++A  VL+
Sbjct: 195 VFEVECSVRNIRAVAAG--SNKKEAEQLSAKRVLE 227


>gi|170781177|ref|YP_001709509.1| ribonuclease III [Clavibacter michiganensis subsp. sepedonicus]
 gi|169155745|emb|CAQ00866.1| ribonuclease III [Clavibacter michiganensis subsp. sepedonicus]
          Length = 238

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/205 (37%), Positives = 98/205 (47%), Gaps = 5/205 (2%)

Query: 22  LLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LLE ALTH S +  H      ERLEFLGD ILG  ++ +L+       EGEL+ R  SLV
Sbjct: 28  LLELALTHRSYAYEHGGIPHNERLEFLGDSILGQAVTVMLYLENPDLDEGELAKRRASLV 87

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
           S+   ++VA  + L   + +            +SI AD VE++I A YLD G E A   V
Sbjct: 88  SSVALAEVATRIGLGEHLLLGRGEELTGGRAKSSILADTVEAIIGASYLDAGGEAATGLV 147

Query: 140 DKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197
            +          +F    D KT LQE A  +    P Y V+  SGPDH  RF  VV +  
Sbjct: 148 LRLIAPLLEDPARFGAAMDPKTALQESAARQGLPAPAYDVS-DSGPDHSKRFHAVVTVGD 206

Query: 198 LAPAQGMDCSKRAAEQVAAAEVLKR 222
                G   SK+ AE  AA E   R
Sbjct: 207 AVRTTGEGSSKKQAEMTAALEAWTR 231


>gi|238026617|ref|YP_002910848.1| ribonuclease III [Burkholderia glumae BGR1]
 gi|237875811|gb|ACR28144.1| Ribonuclease III [Burkholderia glumae BGR1]
          Length = 427

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/198 (34%), Positives = 101/198 (51%), Gaps = 7/198 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++ E   RLEFLGD +L   ++ LLF  F
Sbjct: 1   MSQSQLESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
               EG+LS VR N LV  ++  ++A+ L++A  +R+     +       SI AD  E++
Sbjct: 58  GKLDEGDLSRVRAN-LVKQQSLYEIAQALNIADGLRLGEGELRSGGFRRPSILADAFEAI 116

Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           I A++LDGG E A   + + +      +      +DAKT LQE+        P Y V   
Sbjct: 117 IGAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT 176

Query: 181 SGPDHDPRFTVVVEISGL 198
            G  H+ +F V   +  L
Sbjct: 177 HGAAHNQQFEVECTVPKL 194


>gi|170695422|ref|ZP_02886567.1| Ribonuclease III [Burkholderia graminis C4D1M]
 gi|170139613|gb|EDT07796.1| Ribonuclease III [Burkholderia graminis C4D1M]
          Length = 421

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/195 (34%), Positives = 102/195 (52%), Gaps = 7/195 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S LE R+ Y F N  LL +ALTH S S ++ E   RLEFLGD +L   ++ LLF  F   
Sbjct: 4   SPLESRLRYEFRNAELLRQALTHRSHSSTHNE---RLEFLGDSVLNCAVAALLFQRFGKL 60

Query: 67  KEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
            EG+LS VR N LV  ++  ++A+ L+++  +R+     +       SI AD +E+++ A
Sbjct: 61  DEGDLSRVRAN-LVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADTLEAVLGA 119

Query: 126 LYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           ++LDGG + A T + + +      +      +DAKT LQE+        P Y V    G 
Sbjct: 120 VFLDGGFDAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGA 179

Query: 184 DHDPRFTVVVEISGL 198
            H+ +F V   +  L
Sbjct: 180 AHNQQFEVECTVPKL 194


>gi|258592173|emb|CBE68482.1| Ribonuclease 3 (Ribonuclease III) (RNase III) [NC10 bacterium
           'Dutch sediment']
          Length = 246

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 109/219 (49%), Gaps = 7/219 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNH 62
           ST     G+ F N +LLE ALTH S +   Q      Y+RLEFLGD +  L +S  L + 
Sbjct: 11  STPNTLYGHRFRNSTLLEAALTHPSSTDPSQADVRLRYQRLEFLGDAVWSLYVSDALVSL 70

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
             +A EGEL+ R   LVSA   + +A+   LA  + +S           T + +   E++
Sbjct: 71  LPTASEGELTQRRAGLVSATALADMAQLHGLAPLLLLSKGEELTGGRLKTRVLSSSFEAV 130

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           I A+YLDGG+E       +      L+      D KT LQ  A +    TP Y++  RSG
Sbjct: 131 IGAIYLDGGLEAIRDLAREACVN-TLEGEHVTLDPKTALQHLAQSLLHATPRYRLIRRSG 189

Query: 183 PDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVL 220
             H P F V V I G +P A+G   +++ AE+ AA + L
Sbjct: 190 APHAPTFEVEV-IVGQSPIAKGKGRNRQEAERAAAQDAL 227


>gi|317154737|ref|YP_004122785.1| ribonuclease III [Desulfovibrio aespoeensis Aspo-2]
 gi|316944988|gb|ADU64039.1| ribonuclease III [Desulfovibrio aespoeensis Aspo-2]
          Length = 230

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/215 (34%), Positives = 109/215 (50%), Gaps = 10/215 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLFNHFDSA 66
           L++RI + F    L+E ALTHSS ++  +     ERLEFLGD +L L IS   +  F  A
Sbjct: 6   LQQRIHHRFGQVKLMEAALTHSSHANEQEGDGDNERLEFLGDAVLELCISEEGYRRFPHA 65

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+L+   + LV  ++ + +AR LDL   I +             ++ AD  E+L+ A+
Sbjct: 66  PEGQLTRIRSQLVKEKSLAAIARSLDLHRHILLGKGEELQGGRDRDALLADAFEALMGAV 125

Query: 127 YLDGGIEVA-----GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +LDGG   A       F DK+ +   L   K   D K+ LQE A  +F   P Y +   S
Sbjct: 126 FLDGGFAAARKSILHIFGDKWPEAEMLPETK---DYKSRLQEVAQERFRDRPVYVLAGTS 182

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           GP+H+  F V   +   A  +G+  S + AEQ AA
Sbjct: 183 GPEHEKVFMVDATLPTGACFRGVSSSVKRAEQEAA 217


>gi|223932807|ref|ZP_03624804.1| Ribonuclease III [Streptococcus suis 89/1591]
 gi|302023944|ref|ZP_07249155.1| ribonuclease III [Streptococcus suis 05HAS68]
 gi|330832996|ref|YP_004401821.1| ribonuclease III [Streptococcus suis ST3]
 gi|223898516|gb|EEF64880.1| Ribonuclease III [Streptococcus suis 89/1591]
 gi|329307219|gb|AEB81635.1| ribonuclease III [Streptococcus suis ST3]
          Length = 228

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 104/218 (47%), Gaps = 7/218 (3%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            G  F++ +LLE A TH+S ++ ++       ERLEFLGD +L L+IS  L+  +    E
Sbjct: 12  FGIDFSDLNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLMISKYLYQKYPDRPE 71

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GE+S   ++ V  E+ +  +R      F+R+     K       +I  D  E+ + AL L
Sbjct: 72  GEMSKLRSTFVREESLAGFSRACGFDRFLRLGKGEEKSGGRNRDTILGDAFEAFLGALLL 131

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D G +    F+ K    R L+ G F R  D KT LQE       +   Y+V   SGP HD
Sbjct: 132 DKGEKTVEEFIHKVMIPR-LEKGNFERVTDYKTALQEILQVNGEIAISYQVIAESGPAHD 190

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             F V V        +G   SK+ AEQ AA   ++  G
Sbjct: 191 KTFEVEVSADRRVIGRGRGRSKKLAEQAAAKNAVEARG 228


>gi|313124070|ref|YP_004034329.1| ribonuclease iii [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280633|gb|ADQ61352.1| Ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 231

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 112/222 (50%), Gaps = 15/222 (6%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           L+++ G  F +  LLE+A THSS  +        +YE+LEFLGD +L   +S  L+ HF 
Sbjct: 10  LDEKYGIRFKDVRLLEEAFTHSSYVNENPGKTLGNYEKLEFLGDAVLEFTVSDYLYRHFQ 69

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGEL+   +++V  E  S+VA +      I++     K       ++  DV E+   
Sbjct: 70  HLNEGELTRLRSNIVRTEGFSKVALDCGFKKEIKLGVGEEKAGGRKRKALLEDVFEAFNG 129

Query: 125 ALYLDGGIEVAGTFVDKYWKQRA---LKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTF 179
           AL+LD GIE     V+K+ +Q     + +G F   RD KT+LQE       VT EY+V  
Sbjct: 130 ALFLDQGIEA----VEKFLRQTVYPLIAAGYFTPSRDFKTDLQELLQQNGSVTIEYRVLN 185

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            S     P F V V + G   A G   +K+ AEQ AA+  L+
Sbjct: 186 ES--QQPPHFEVEVLVDGKKLASGEGRNKKKAEQDAASHALE 225


>gi|311029996|ref|ZP_07708086.1| ribonuclease III [Bacillus sp. m3-13]
          Length = 247

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 109/223 (48%), Gaps = 7/223 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +  L++++G  F N  LL +A THSS  + ++    E  ERLEFLGD +L L IS  L+ 
Sbjct: 20  FVMLQEKLGVKFHNEKLLYQAFTHSSYVNEHRRKPYEDNERLEFLGDAVLELTISQFLYK 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +    EG+L+    S+V   +    A +L    ++ +             ++ ADV E+
Sbjct: 80  KYPMMSEGQLTKLRASIVCEPSLVSFANDLSFGQYVLLGKGEEITGGRARPALLADVFEA 139

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179
            I ALYLD G+E    F++KY   + +  G F    D K++LQE          EY+V  
Sbjct: 140 FIGALYLDLGLETVFQFLEKYVYPK-INEGAFSHVMDFKSQLQEMIQRNALGVIEYEVLE 198

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             GP H+  F   V ++      G+  SK+ AEQ AA   L++
Sbjct: 199 EKGPAHNREFVSKVSLNKEEMGIGVGRSKKEAEQHAAQFALQK 241


>gi|186475606|ref|YP_001857076.1| ribonuclease III [Burkholderia phymatum STM815]
 gi|184192065|gb|ACC70030.1| Ribonuclease III [Burkholderia phymatum STM815]
          Length = 441

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/198 (33%), Positives = 103/198 (52%), Gaps = 7/198 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++ E   RLEFLGD +L   ++ LLF  F
Sbjct: 9   MPLSPLESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRF 65

Query: 64  DSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
               EG+LS VR N LV  ++  ++A+ L+++  +R+     +       SI AD +E++
Sbjct: 66  GKLDEGDLSRVRAN-LVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADTLEAI 124

Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           + A++LDGG + A T + + +      +      +DAKT LQE+        P Y V   
Sbjct: 125 LGAIFLDGGFDAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIPLPTYTVVAT 184

Query: 181 SGPDHDPRFTVVVEISGL 198
            G  H+ +F V   +  L
Sbjct: 185 HGAAHNQQFEVECTVPKL 202


>gi|296113914|ref|YP_003627852.1| ribonuclease III [Moraxella catarrhalis RH4]
 gi|295921608|gb|ADG61959.1| ribonuclease III [Moraxella catarrhalis RH4]
          Length = 266

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 113/224 (50%), Gaps = 10/224 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             L  ++GY F + SLL +ALTH S  +  ++SYERLEFLGD +L  +I+  LF  +   
Sbjct: 37  PVLYAKLGYTFKDVSLLCRALTHRS--YDPKKSYERLEFLGDALLSSIITKALFAQYPKH 94

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+L+    +LV  ET  Q+A  L+L+  + +    RK       SI AD VE+LIAA+
Sbjct: 95  DEGKLTRMRAALVRQETLVQIADHLELSRHLILGVGERKGGGRHRASILADAVEALIAAV 154

Query: 127 YLDG----GIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKV--T 178
           YLD     G  +    V  ++K    + G+ +  +DAK+ LQE         P Y++  T
Sbjct: 155 YLDNLNSDGENIIHRMVMDWYKDLIQEVGQEQVLKDAKSRLQELLQGNRLPLPTYELIQT 214

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             S P+          + G+ P      S+R AEQ  A  ++ +
Sbjct: 215 LGSAPNQVFVVRCHCTVVGVDPIIETGASRRIAEQKCAERMINQ 258


>gi|149200057|ref|ZP_01877082.1| ribonuclease III [Lentisphaera araneosa HTCC2155]
 gi|149136815|gb|EDM25243.1| ribonuclease III [Lentisphaera araneosa HTCC2155]
          Length = 232

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 114/225 (50%), Gaps = 9/225 (4%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY---ERLEFLGDRILGLLISTLL 59
           ++ +  LE  +   F   +LL +ALTH S     +E     +RLEFLGD ++ L++S  L
Sbjct: 2   SISFKVLEDNLKCKFNQPTLLREALTHRSYKFESKEPLNDNQRLEFLGDAVIELIVSRYL 61

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F+ +  A EG+L+    +LV      + A+ + L  ++ +     K   +   S  +D  
Sbjct: 62  FDRYPDAPEGDLTKYRAALVKESALFECAKSIKLGKYLLLGKSELKSQGNERPSNLSDAY 121

Query: 120 ESLIAALYLDGGIEVAGTF----VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
           E+L+AA+YLD G E A +F    ++K W + A       ++ K  LQE      G  P+Y
Sbjct: 122 EALMAAIYLDQGYETAQSFHINILEKLWDEPA--DLLLVQNPKGTLQELTQKNHGSPPKY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
               ++GP+HDP + V   ++    ++G   + +AA++ AA + +
Sbjct: 180 ITISKTGPEHDPLYKVECILNKELISKGQGKTLKAAQENAARKAI 224


>gi|254245911|ref|ZP_04939232.1| Ribonuclease III [Burkholderia cenocepacia PC184]
 gi|124870687|gb|EAY62403.1| Ribonuclease III [Burkholderia cenocepacia PC184]
          Length = 350

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/195 (34%), Positives = 100/195 (51%), Gaps = 7/195 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S LE R+ Y F N  LL +ALTH S S ++ E   RLEFLGD +L   ++ LLF  F   
Sbjct: 22  SQLESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRFGKL 78

Query: 67  KEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
            EG+LS VR N LV  ++  ++A+ L+++  +R+     +       SI AD  E++I A
Sbjct: 79  DEGDLSRVRAN-LVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGA 137

Query: 126 LYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           ++LDGG E A   + + +      +      +DAKT LQE+        P Y V    G 
Sbjct: 138 VFLDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGA 197

Query: 184 DHDPRFTVVVEISGL 198
            H+ +F V   +  L
Sbjct: 198 AHNQQFEVECTVPKL 212


>gi|322389960|ref|ZP_08063500.1| ribonuclease III [Streptococcus parasanguinis ATCC 903]
 gi|321143396|gb|EFX38834.1| ribonuclease III [Streptococcus parasanguinis ATCC 903]
          Length = 242

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/216 (31%), Positives = 111/216 (51%), Gaps = 7/216 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62
           + L +R    F++ SLL+ A TH+S ++ ++       ERLEFLGD +L L+IS  L+  
Sbjct: 15  TLLSERFQIVFSDSSLLDTAFTHTSYANEHRLLKISHNERLEFLGDAVLQLVISEYLYKE 74

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
             +  EG+LS   + +V  E+ +  +R+     +I++     K       +I  D+ E+ 
Sbjct: 75  HPNRPEGDLSKFRSMIVREESLAGFSRDCQFDHYIKLGKGEEKSGGRDRDTILGDLFEAF 134

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180
           + AL LD G+E    F+ +    + +++G+F +  D KT LQE       V  +Y+V   
Sbjct: 135 LGALLLDQGVEAVKRFIYQVMIPK-VETGQFSQVIDYKTRLQELLQVHGDVEIQYQVVSE 193

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           SGP H   F V V ++G     G   SK+ AEQ AA
Sbjct: 194 SGPAHAKEFEVEVFVNGKTLGHGHGRSKKLAEQEAA 229


>gi|221214088|ref|ZP_03587061.1| ribonuclease III [Burkholderia multivorans CGD1]
 gi|221166265|gb|EED98738.1| ribonuclease III [Burkholderia multivorans CGD1]
          Length = 402

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/198 (34%), Positives = 101/198 (51%), Gaps = 7/198 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++ E   RLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSQLESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
               EG+LS VR N LV  ++  ++A+ L+++  +R+     +       SI AD  E++
Sbjct: 58  GKLDEGDLSRVRAN-LVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADAFEAI 116

Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           I A++LDGG E A   + + +      +      +DAKT LQE+        P Y V   
Sbjct: 117 IGAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT 176

Query: 181 SGPDHDPRFTVVVEISGL 198
            G  H+ +F V   +  L
Sbjct: 177 HGAAHNQQFEVECTVPKL 194


>gi|332685822|ref|YP_004455596.1| ribonuclease III [Melissococcus plutonius ATCC 35311]
 gi|332369831|dbj|BAK20787.1| ribonuclease III [Melissococcus plutonius ATCC 35311]
          Length = 230

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 111/219 (50%), Gaps = 7/219 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSI--SHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64
           L++R G  F + +LLE+A THSS    H Y +    ER+EFLGD +L L+IS  L+  + 
Sbjct: 9   LKERYGIVFHDVNLLEQAFTHSSYVNEHRYLKLSDNERIEFLGDAVLELIISQYLYQKYQ 68

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EG+L+    ++V  ++ ++ A+E     +I + +          +++  D+ E+ + 
Sbjct: 69  NLPEGKLTKMRAAIVREDSLAKFAKECQFDQYILLGNGEENSGGRERSALLCDLFEAFLG 128

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182
           ALYLD GIE    F+ +    + ++ G F    D KT LQE    K  V  +Y++    G
Sbjct: 129 ALYLDQGIETVKYFISEIIFPK-IEEGNFSHEVDHKTHLQEVLQHKGDVNIDYRLVDEKG 187

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           P HD  F   +        +G   SK+ AEQ AA   LK
Sbjct: 188 PAHDRIFYTEIYADEKLIGRGHGRSKKLAEQDAAERALK 226


>gi|37929739|gb|AAP70361.1| ribonuclease III [Ehrlichia ruminantium]
          Length = 156

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/146 (36%), Positives = 84/146 (57%)

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           +LV      +VA+ ++L +FI +S   R    +  +S   + +E+LI A+YLDGG++ A 
Sbjct: 5   ALVCGTKLVEVAQSINLGTFIIMSDGERTCGGANNSSNLENALEALIGAIYLDGGLKAAK 64

Query: 137 TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
            F+  +WK  A       +DAKT LQEWA +K  + P Y +  +SGPDH+P FTV V + 
Sbjct: 65  NFIFLFWKNSAKHMKVPPQDAKTILQEWAQSKGLLAPSYHIVNKSGPDHNPIFTVEVRMH 124

Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLKR 222
                Q    +K+ AEQ AA+ +L++
Sbjct: 125 SYETLQATGNNKKIAEQKAASLMLEK 150


>gi|308388873|gb|ADO31193.1| putative ribonuclease III [Neisseria meningitidis alpha710]
          Length = 267

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 116/220 (52%), Gaps = 8/220 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++KR+GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F  
Sbjct: 39  HAAIQKRLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDTFPK 95

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 96  LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 155

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +  D     A   V   +  R ++   F+   +D KT LQE   A+    P+Y++  + G
Sbjct: 156 VSFDADFNTAEKVVRHLFADR-VRCADFQNQAKDGKTALQEALQARRFALPKYRIEEQIG 214

Query: 183 PDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221
             +D  F +  ++  L    +    S++AAEQ AA E L+
Sbjct: 215 HANDSMFVISCDLGELGFVCRAKGTSRKAAEQSAAKEALQ 254


>gi|156501954|ref|YP_001428019.1| ribonuclease III [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|290954597|ref|ZP_06559218.1| ribonuclease III [Francisella tularensis subsp. holarctica URFT1]
 gi|295311940|ref|ZP_06802764.1| ribonuclease III [Francisella tularensis subsp. holarctica URFT1]
 gi|189043315|sp|A7NAR0|RNC_FRATF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|156252557|gb|ABU61063.1| ribonuclease III [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 230

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 119/230 (51%), Gaps = 18/230 (7%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           YS     +GY F + +LL +ALTH S +   +++YERLEFLGD +L  +I+ +L+  F  
Sbjct: 5   YSRFYNILGYNFKDYTLLIRALTHRSKT---KKNYERLEFLGDSVLSFVIAEVLYKQFTD 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS   + LV   T +Q+A  L +  +I + +   +   +    I  DV E++I A
Sbjct: 62  LAEGKLSQLRSKLVKGTTLAQLASSLKMDEYIILGAS--EQGGNKREKILEDVFEAVIGA 119

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR----RDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +YLD         + K W Q  + S        +D+K++LQE         PEY +    
Sbjct: 120 IYLDSDFATVKKVILK-WYQPIISSINLDTIKVKDSKSKLQEILLQNALSLPEYSIETID 178

Query: 182 GPDHDPRFTVVV---EISGLAPAQGMDCSKRAAEQVAA---AEVLKREGI 225
           G DH+ +FTVV    +++    AQG   S++ AEQ  A    E+L ++G+
Sbjct: 179 GKDHEQQFTVVAVSKDLNLRVKAQG--TSRKKAEQKTAEKMIEMLSQQGL 226


>gi|295399780|ref|ZP_06809761.1| ribonuclease III [Geobacillus thermoglucosidasius C56-YS93]
 gi|312111708|ref|YP_003990024.1| ribonuclease III [Geobacillus sp. Y4.1MC1]
 gi|294978183|gb|EFG53780.1| ribonuclease III [Geobacillus thermoglucosidasius C56-YS93]
 gi|311216809|gb|ADP75413.1| ribonuclease III [Geobacillus sp. Y4.1MC1]
          Length = 246

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 107/224 (47%), Gaps = 7/224 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++  L+K+IG  F N  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF
Sbjct: 17  KFKELQKKIGIFFTNEKLLIQAFTHSSYVNEHRKRPHEDNERLEFLGDAVLELTVSQYLF 76

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EGEL+    ++V   +  + A  L     + +             ++ ADV E
Sbjct: 77  KKFPHMSEGELTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFE 136

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178
           + I ALYLD G++    F+ +    + +  G F    D K++LQE          EY + 
Sbjct: 137 AFIGALYLDKGMDAVMQFLGQTIFPK-IDEGAFSHVMDFKSQLQELVQRDGIGVLEYSIL 195

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              GP H+  F   V ++G     G+  SK+ AEQ AA   L++
Sbjct: 196 EEKGPAHNKEFVSRVSLNGQELGIGVGKSKKEAEQHAAQMALQK 239


>gi|254374854|ref|ZP_04990335.1| ribonuclease III [Francisella novicida GA99-3548]
 gi|151572573|gb|EDN38227.1| ribonuclease III [Francisella novicida GA99-3548]
          Length = 230

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 119/230 (51%), Gaps = 18/230 (7%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           YS     +GY F + +LL +ALTH S +   +++YERLEFLGD +L  +I+ +L+  F  
Sbjct: 5   YSRFYNILGYNFKDYTLLIRALTHRSKT---KKNYERLEFLGDSVLSFVIAEVLYKQFTD 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS   + LV   T +Q+A  L +  +I + +   +        I  DV E++I A
Sbjct: 62  LAEGKLSQLRSKLVKGTTLAQLASSLKMDEYIILGAS--EQGGHKREKILEDVFEAVIGA 119

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR----RDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +YLD         + K W Q  + S        +D+K++LQE         PEY +    
Sbjct: 120 IYLDSDFATVKKVILK-WYQPIILSINLDTIKVKDSKSKLQEILLQNALSLPEYSIEAID 178

Query: 182 GPDHDPRFTVVV---EISGLAPAQGMDCSKRAAEQVAA---AEVLKREGI 225
           G DH+ +FTVV    +++    AQG   S++ AEQ AA    E+L ++G+
Sbjct: 179 GKDHEQQFTVVAMSKDLNLRVKAQG--TSRKKAEQKAAEKMIEMLSQQGL 226


>gi|326560591|gb|EGE10972.1| ribonuclease III [Moraxella catarrhalis 103P14B1]
 gi|326565582|gb|EGE15745.1| ribonuclease III [Moraxella catarrhalis 12P80B1]
 gi|326572025|gb|EGE22027.1| ribonuclease III [Moraxella catarrhalis BC8]
 gi|326573972|gb|EGE23922.1| ribonuclease III [Moraxella catarrhalis O35E]
 gi|326574964|gb|EGE24894.1| ribonuclease III [Moraxella catarrhalis 101P30B1]
          Length = 262

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 113/224 (50%), Gaps = 10/224 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             L  ++GY F + SLL +ALTH S  +  ++SYERLEFLGD +L  +I+  LF  +   
Sbjct: 33  PVLYAKLGYTFKDVSLLCRALTHRS--YDPKKSYERLEFLGDALLSSIITKALFAQYPKH 90

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+L+    +LV  ET  Q+A  L+L+  + +    RK       SI AD VE+LIAA+
Sbjct: 91  DEGKLTRMRAALVRQETLVQIADHLELSRHLILGVGERKGGGRHRASILADAVEALIAAV 150

Query: 127 YLDG----GIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKV--T 178
           YLD     G  +    V  ++K    + G+ +  +DAK+ LQE         P Y++  T
Sbjct: 151 YLDNLNSDGENIIHRMVMDWYKDLIQEVGQEQVLKDAKSRLQELLQGNRLPLPTYELIQT 210

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             S P+          + G+ P      S+R AEQ  A  ++ +
Sbjct: 211 LGSAPNQVFVVRCHCTVVGVDPIIETGASRRIAEQKCAERMINQ 254


>gi|184155714|ref|YP_001844054.1| ribonuclease III [Lactobacillus fermentum IFO 3956]
 gi|227515694|ref|ZP_03945743.1| ribonuclease III [Lactobacillus fermentum ATCC 14931]
 gi|238692982|sp|B2GD42|RNC_LACF3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|183227058|dbj|BAG27574.1| ribonuclease III [Lactobacillus fermentum IFO 3956]
 gi|227085942|gb|EEI21254.1| ribonuclease III [Lactobacillus fermentum ATCC 14931]
 gi|299783404|gb|ADJ41402.1| Ribonuclease 3 (Ribonuclease III) (RNase III) [Lactobacillus
           fermentum CECT 5716]
          Length = 232

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 105/220 (47%), Gaps = 7/220 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           L K  G  F N +LL +A T +S      H   + YER+EFLGD +L L +S  ++  + 
Sbjct: 9   LAKTYGIHFNNPALLAEAFTQASYVNEHPHENLKYYERIEFLGDAVLQLFVSEYIYRRYP 68

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              +G+L+    ++V  ++ S+ A+E     +IR+             S+  D+ ES I 
Sbjct: 69  ELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGKGEEMAGARNRASLLCDIFESFIG 128

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182
           ALYLD G +    F+      + L  G F    DAKT LQE+      V  EY +    G
Sbjct: 129 ALYLDQGRQAVEQFIQTVIFPK-LDLGWFDHAVDAKTSLQEFLQRNGDVAIEYDLLSEGG 187

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            ++DP F V V + G   A G   SK+ AE  AA   L++
Sbjct: 188 TENDPVFEVEVTVDGKKVATGQGSSKKHAEMEAAKHALEK 227


>gi|254252845|ref|ZP_04946163.1| Ribonuclease III [Burkholderia dolosa AUO158]
 gi|124895454|gb|EAY69334.1| Ribonuclease III [Burkholderia dolosa AUO158]
          Length = 377

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/195 (35%), Positives = 100/195 (51%), Gaps = 7/195 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S LE R+ Y F N  LL +ALTH S S ++ E   RLEFLGD +L   ++ LLF  F   
Sbjct: 4   SQLESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRFGKL 60

Query: 67  KEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
            EG+LS VR N LV  ++  ++A+ L++A  +R+     +       SI AD  E++I A
Sbjct: 61  DEGDLSRVRAN-LVKQQSLYEIAQALNIADGLRLGEGELRSGGFRRPSILADAFEAIIGA 119

Query: 126 LYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           ++LDGG E A   + + +      +      +DAKT LQE+        P Y V    G 
Sbjct: 120 VFLDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATLGA 179

Query: 184 DHDPRFTVVVEISGL 198
            H+ +F V   +  L
Sbjct: 180 AHNQQFEVECTVPKL 194


>gi|239826585|ref|YP_002949209.1| ribonuclease III [Geobacillus sp. WCH70]
 gi|259491901|sp|C5D8T6|RNC_GEOSW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|239806878|gb|ACS23943.1| ribonuclease III [Geobacillus sp. WCH70]
          Length = 246

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 107/224 (47%), Gaps = 7/224 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++  L+K+IG  F N  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF
Sbjct: 17  KFKELQKKIGIFFTNEKLLIQAFTHSSYVNEHRRRPHEDNERLEFLGDAVLELTVSQYLF 76

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EGEL+    ++V   +  + A  L     + +             ++ ADV E
Sbjct: 77  KKFPHMSEGELTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFE 136

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178
           + I ALYLD G++    F+ +    + +  G F    D K++LQE          EY + 
Sbjct: 137 AFIGALYLDQGMDAVMQFLGQTIFPK-IDEGAFSHVMDFKSQLQELVQRDGIGVLEYSIL 195

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              GP H+  F   V ++G     G+  SK+ AEQ AA   L++
Sbjct: 196 EEKGPAHNKEFVSRVSLNGQELGIGVGKSKKEAEQHAAQMALQK 239


>gi|148272538|ref|YP_001222099.1| ribonuclease III [Clavibacter michiganensis subsp. michiganensis
           NCPPB 382]
 gi|147830468|emb|CAN01403.1| ribonuclease III [Clavibacter michiganensis subsp. michiganensis
           NCPPB 382]
          Length = 238

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/205 (37%), Positives = 98/205 (47%), Gaps = 5/205 (2%)

Query: 22  LLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LLE ALTH S +  H      ERLEFLGD ILG  ++ +L+       EGEL+ R  SLV
Sbjct: 28  LLELALTHRSYAYEHGGIPHNERLEFLGDSILGQAVTVMLYLENPDLDEGELAKRRASLV 87

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
           S+   ++VA  + L   + +            +SI AD VE++I A YLD G E A   V
Sbjct: 88  SSVALAEVATRIGLGEHLLLGRGEELTGGRAKSSILADTVEAIIGASYLDAGGEAATGLV 147

Query: 140 DKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197
            +          +F    D KT LQE A  +    P Y V+  SGPDH  RF  VV +  
Sbjct: 148 LRLIAPLLEDPARFGAAMDPKTALQESAARQGLPAPVYDVS-DSGPDHSKRFHAVVTVGD 206

Query: 198 LAPAQGMDCSKRAAEQVAAAEVLKR 222
                G   SK+ AE  AA E   R
Sbjct: 207 AVRTTGEGSSKKQAEMTAALEAWTR 231


>gi|221201351|ref|ZP_03574390.1| ribonuclease III [Burkholderia multivorans CGD2M]
 gi|221208831|ref|ZP_03581829.1| ribonuclease III [Burkholderia multivorans CGD2]
 gi|221171287|gb|EEE03736.1| ribonuclease III [Burkholderia multivorans CGD2]
 gi|221178619|gb|EEE11027.1| ribonuclease III [Burkholderia multivorans CGD2M]
          Length = 406

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/198 (34%), Positives = 101/198 (51%), Gaps = 7/198 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++ E   RLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSQLESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
               EG+LS VR N LV  ++  ++A+ L+++  +R+     +       SI AD  E++
Sbjct: 58  GKLDEGDLSRVRAN-LVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADAFEAI 116

Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           I A++LDGG E A   + + +      +      +DAKT LQE+        P Y V   
Sbjct: 117 IGAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT 176

Query: 181 SGPDHDPRFTVVVEISGL 198
            G  H+ +F V   +  L
Sbjct: 177 HGAAHNQQFEVECTVPKL 194


>gi|167041438|gb|ABZ06190.1| putative RNase3 domain protein [uncultured marine microorganism
           HF4000_006O13]
 gi|167041995|gb|ABZ06732.1| putative RNase3 domain protein [uncultured marine microorganism
           HF4000_141E02]
          Length = 224

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/215 (35%), Positives = 110/215 (51%), Gaps = 7/215 (3%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           E+R  Y F +  LL+ ALTH S  HS  ++ ERLEFLGD  L L+IS LL+  +    EG
Sbjct: 9   EQRFHYRFKDDILLQTALTHRS--HSV-DNNERLEFLGDAALDLVISELLYQSYSEQTEG 65

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
            LS   +SLV   T +++A+ELD+  ++ +             S+ +D +E++I A++LD
Sbjct: 66  YLSRMRSSLVKGNTLAELAKELDVGGYLILGKGENTSGGRERLSLLSDTLEAMIGAIFLD 125

Query: 130 GGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           GG       + K +  R  AL      +D K+ LQE         P Y +  RS  DH+ 
Sbjct: 126 GGYVAVKNVIIKIFDSRIQALDPKSEHKDHKSVLQEKLQGVKQGLPVYSLV-RSVGDHNK 184

Query: 188 RFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLK 221
            F V   I SG    Q    + R AEQ AA++ L+
Sbjct: 185 TFVVECSIKSGEIVTQASGKTLRVAEQKAASKALQ 219


>gi|168698810|ref|ZP_02731087.1| ribonuclease III [Gemmata obscuriglobus UQM 2246]
          Length = 215

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/201 (31%), Positives = 108/201 (53%), Gaps = 3/201 (1%)

Query: 22  LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
           LL  ALTH+S +++   S ERLEFLGD +LGL+    L+  F   +EG+L+   +++VS 
Sbjct: 3   LLRSALTHTSSANTRAASNERLEFLGDSVLGLVTCEQLYRRFPEYQEGDLTKVKSAVVSR 62

Query: 82  ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141
           +TC++ ++E+ L  F+ +   +  +      +I A+  ESL+AA++LDGG + A  FV  
Sbjct: 63  KTCARFSQEIRLGDFLFLGRGVNSN-GEMPLNILANAFESLVAAVFLDGGWDAARDFVLD 121

Query: 142 YWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
           +      +  +     +AK++LQ     ++G TP Y +    GPD++  F V  ++    
Sbjct: 122 FIDPEVDRVARDAISANAKSQLQTVTQREYGDTPRYFLLDEQGPDNNKCFKVAAQVHDER 181

Query: 200 PAQGMDCSKRAAEQVAAAEVL 220
                  +K+ AE  AA   L
Sbjct: 182 FPAAWGHTKKEAELKAAMNAL 202


>gi|193211801|ref|YP_001997754.1| Ribonuclease III [Chlorobaculum parvum NCIB 8327]
 gi|193085278|gb|ACF10554.1| Ribonuclease III [Chlorobaculum parvum NCIB 8327]
          Length = 276

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 118/234 (50%), Gaps = 16/234 (6%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ------ESYERLEFLGDRILGLL 54
           ++A   S LE   G   + R +   ALTH S+ H +Q      ES +RLEFLGD +L LL
Sbjct: 34  LAAATLSHLEHLTGRPCSRRQIYRIALTHRSLLHDHQGESERPESNQRLEFLGDAVLDLL 93

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV--SSDLRKDVCSFMT 112
           IS  LF  +  + EG LS     +V+ +  +  AREL L   + +  S++L+K   S   
Sbjct: 94  ISEHLFRLYPESDEGHLSSNRAKIVNRKALAAFARELKLGEHLIIGESANLQKIRTS--D 151

Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAK 168
           S  AD  E+L+ A+YLD G++ A  F+  +         +   +F  + K+ L E++ + 
Sbjct: 152 SALADAFEALVGAIYLDQGLDGAKRFIMNHVITMVDLNRIVEAEF--NYKSRLIEFSQSH 209

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
               P Y V    G +H+  F + V  + +   +G    K+ AEQ+AA E +KR
Sbjct: 210 QLPQPVYTVVAEEGAEHEKTFVIEVSCNDIPLGKGTAPRKKDAEQLAAREAMKR 263


>gi|308068621|ref|YP_003870226.1| ribonuclease III [Paenibacillus polymyxa E681]
 gi|310641509|ref|YP_003946267.1| ribonuclease iii [Paenibacillus polymyxa SC2]
 gi|305857900|gb|ADM69688.1| Ribonuclease III (RNase III) [Paenibacillus polymyxa E681]
 gi|309246459|gb|ADO56026.1| Ribonuclease III [Paenibacillus polymyxa SC2]
          Length = 232

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 116/220 (52%), Gaps = 7/220 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESY----ERLEFLGDRILGLLISTLLFNHFD 64
           L++++   F NR LL++A TH+S  + ++ S     ERLEFLGD +L L +S  L+N + 
Sbjct: 8   LQQKLHIQFNNRQLLKQAFTHASYVNEHRFSQHADNERLEFLGDAVLELTVSEQLYNQYP 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EGEL+    ++V   +  + A  L+   ++ +             ++ ADV E+ + 
Sbjct: 68  NRPEGELTKLRAAIVCEPSLVKFAVGLEFGQYVLLGKGEELTGGRTRPALLADVFEAFVG 127

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWA-HAKFGVTPEYKVTFRSG 182
           ALYLD G+E   +F+++Y   + + +GK +  D KTELQE   H   G+  EYK+    G
Sbjct: 128 ALYLDQGLEAVRSFLERYIFPQIVLNGKLQMSDFKTELQELTQHHNMGML-EYKIVEERG 186

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           P H+  F   V +       G   SK+ AEQ AAA  L R
Sbjct: 187 PAHEREFVAEVYMDSERLGAGTGRSKKEAEQQAAAVALNR 226


>gi|170732444|ref|YP_001764391.1| ribonuclease III [Burkholderia cenocepacia MC0-3]
 gi|169815686|gb|ACA90269.1| Ribonuclease III [Burkholderia cenocepacia MC0-3]
          Length = 409

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/195 (34%), Positives = 100/195 (51%), Gaps = 7/195 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S LE R+ Y F N  LL +ALTH S S ++ E   RLEFLGD +L   ++ LLF  F   
Sbjct: 4   SQLESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRFGKL 60

Query: 67  KEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
            EG+LS VR N LV  ++  ++A+ L+++  +R+     +       SI AD  E++I A
Sbjct: 61  DEGDLSRVRAN-LVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGA 119

Query: 126 LYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           ++LDGG E A   + + +      +      +DAKT LQE+        P Y V    G 
Sbjct: 120 VFLDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGA 179

Query: 184 DHDPRFTVVVEISGL 198
            H+ +F V   +  L
Sbjct: 180 AHNQQFEVECTVPKL 194


>gi|260663569|ref|ZP_05864459.1| ribonuclease III [Lactobacillus fermentum 28-3-CHN]
 gi|260552110|gb|EEX25163.1| ribonuclease III [Lactobacillus fermentum 28-3-CHN]
          Length = 232

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 105/220 (47%), Gaps = 7/220 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           L K  G  F N +LL +A T +S      H   + YER+EFLGD +L L +S  ++  + 
Sbjct: 9   LAKTYGIHFNNPALLAEAFTQASYVNEHPHENLKYYERIEFLGDAVLQLFVSEYIYRRYP 68

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              +G+L+    ++V  ++ S+ A+E     +IR+             S+  D+ ES I 
Sbjct: 69  ELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGKGEEMAGARNRASLLCDIFESFIG 128

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182
           ALYLD G +    F+      + L  G F    DAKT LQE+      V  EY +    G
Sbjct: 129 ALYLDQGRQAVEQFIQTVIFPK-LDLGWFDHAVDAKTSLQEFLQRNGDVAIEYDLLSEGG 187

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            ++DP F V V + G   A G   SK+ AE  AA   L++
Sbjct: 188 TENDPVFEVEVTVDGKKVATGQGSSKKHAEMDAAKHALEK 227


>gi|239617283|ref|YP_002940605.1| ribonuclease III [Kosmotoga olearia TBF 19.5.1]
 gi|239506114|gb|ACR79601.1| ribonuclease III [Kosmotoga olearia TBF 19.5.1]
          Length = 249

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/201 (35%), Positives = 103/201 (51%), Gaps = 11/201 (5%)

Query: 25  KALTHSSISHSYQ------ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           KAL HSS ++         ES ERLEFLGD +L L ++ LL+  +D   EG +S     +
Sbjct: 26  KALCHSSYANEVVRKGMNVESNERLEFLGDAVLALSLADLLYREYD-VDEGVMSKTRAVV 84

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138
            S +  ++VAR +++  ++ +     K       SI AD  E+++ ALYL  G E+A  F
Sbjct: 85  ASEKVLAEVARNMNIGEYLLLGKGELKTGGRGRDSILADAFEAILGALYLSEGFEIARNF 144

Query: 139 VDK---YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
           V +    + ++AL   +   D KT LQE      GV PEY      G   +  F V V +
Sbjct: 145 VKEKLGIYIEKALNK-ELVLDYKTTLQELTQGNLGVRPEYSYIENIGTPQNKLFHVEVRV 203

Query: 196 SGLAPAQGMDCSKRAAEQVAA 216
           +G A A G   +K+AAEQ AA
Sbjct: 204 NGKALAVGYGKTKKAAEQDAA 224


>gi|161525340|ref|YP_001580352.1| ribonuclease III [Burkholderia multivorans ATCC 17616]
 gi|189349923|ref|YP_001945551.1| ribonuclease III [Burkholderia multivorans ATCC 17616]
 gi|160342769|gb|ABX15855.1| Ribonuclease III [Burkholderia multivorans ATCC 17616]
 gi|189333945|dbj|BAG43015.1| ribonuclease III [Burkholderia multivorans ATCC 17616]
          Length = 406

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/198 (34%), Positives = 101/198 (51%), Gaps = 7/198 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++ E   RLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSQLESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
               EG+LS VR N LV  ++  ++A+ L+++  +R+     +       SI AD  E++
Sbjct: 58  GKLDEGDLSRVRAN-LVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADAFEAI 116

Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           I A++LDGG E A   + + +      +      +DAKT LQE+        P Y V   
Sbjct: 117 IGAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT 176

Query: 181 SGPDHDPRFTVVVEISGL 198
            G  H+ +F V   +  L
Sbjct: 177 HGAAHNQQFEVECTVPKL 194


>gi|328466160|gb|EGF37317.1| ribonuclease III [Listeria monocytogenes 1816]
          Length = 222

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 110/216 (50%), Gaps = 7/216 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++  L++ +G+ F +  LL++A THSS  + ++    +  ERLEFLGD +L L +S  LF
Sbjct: 3   QWEELQESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSNYLF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N +    EG ++    ++V   +  + A  +  + ++R+     K       ++ ADV E
Sbjct: 63  NKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178
           S I ALYLD GI+   TF+++    + + +G + +  D KT+LQE       V  EY + 
Sbjct: 123 SFIGALYLDNGIDKVVTFLERVIFPK-IDAGAYLQTVDYKTQLQEIVQRDRDVLIEYDIL 181

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
             +GP H+  F   V ++G    +G    K    +V
Sbjct: 182 GETGPAHNKAFDAQVIVNGQVLGKGSGRQKNKQNKV 217


>gi|297539125|ref|YP_003674894.1| ribonuclease III [Methylotenera sp. 301]
 gi|297258472|gb|ADI30317.1| ribonuclease III [Methylotenera sp. 301]
          Length = 231

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/185 (35%), Positives = 94/185 (50%), Gaps = 5/185 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L KR+ Y F +++LL +ALTH S +    ++ ERLE+LGD  L  +I+  L+  F S  E
Sbjct: 6   LSKRLSYKFVDKNLLTQALTHRSYA---SQNNERLEYLGDGALNFIIANQLYQRFPSLAE 62

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS     LV   T S++A  LD+   +++     K       SI AD +E++I A+YL
Sbjct: 63  GDLSRLRAQLVKEATISEIAFSLDIGDALKLGEGELKSAGWRRPSILADALEAIIGAVYL 122

Query: 129 DGGIEVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           DGG   A   V + +  K   +      +D K+ LQE    K    PEY V   SG  H 
Sbjct: 123 DGGFFAAEALVLELYIEKLSTIDPKIIDKDPKSLLQEMLQGKKIAVPEYAVVHTSGEAHA 182

Query: 187 PRFTV 191
             F V
Sbjct: 183 QIFIV 187


>gi|206559398|ref|YP_002230159.1| ribonuclease III [Burkholderia cenocepacia J2315]
 gi|206561200|ref|YP_002231965.1| ribonuclease III [Burkholderia cenocepacia J2315]
 gi|198035436|emb|CAR51312.1| ribonuclease III 2 [Burkholderia cenocepacia J2315]
 gi|198037242|emb|CAR53164.1| ribonuclease III 1 [Burkholderia cenocepacia J2315]
          Length = 409

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/198 (34%), Positives = 101/198 (51%), Gaps = 7/198 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++ E   RLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSQLESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
               EG+LS VR N LV  ++  ++A+ L+++  +R+     +       SI AD  E++
Sbjct: 58  GKLDEGDLSRVRAN-LVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAI 116

Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           I A++LDGG E A   + + +      +      +DAKT LQE+        P Y V   
Sbjct: 117 IGAVFLDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT 176

Query: 181 SGPDHDPRFTVVVEISGL 198
            G  H+ +F V   +  L
Sbjct: 177 HGAAHNQQFEVECTVPKL 194


>gi|293410983|ref|ZP_06654559.1| LOW QUALITY PROTEIN: ribonuclease III [Escherichia coli B354]
 gi|291471451|gb|EFF13935.1| LOW QUALITY PROTEIN: ribonuclease III [Escherichia coli B354]
          Length = 189

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/185 (35%), Positives = 99/185 (53%), Gaps = 3/185 (1%)

Query: 41  ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
           ERLEFLGD IL  +I+  L++ F    EG++S    +LV   T +++ARE +L   +R+ 
Sbjct: 1   ERLEFLGDSILSYVIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLG 60

Query: 101 SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAK 158
               K       SI AD VE+LI  ++LD  I+     +  +++ R   +  G  ++D K
Sbjct: 61  PGELKSGGFRRESILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPK 120

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAA 217
           T LQE+   +    P Y V    G  HD  FT+  ++SGL+ P  G   S+R AEQ AA 
Sbjct: 121 TRLQEYLQGRHLPLPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAE 180

Query: 218 EVLKR 222
           + LK+
Sbjct: 181 QALKK 185


>gi|107022210|ref|YP_620537.1| ribonuclease III [Burkholderia cenocepacia AU 1054]
 gi|116689156|ref|YP_834779.1| ribonuclease III [Burkholderia cenocepacia HI2424]
 gi|105892399|gb|ABF75564.1| RNAse III [Burkholderia cenocepacia AU 1054]
 gi|116647245|gb|ABK07886.1| RNAse III [Burkholderia cenocepacia HI2424]
          Length = 409

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/195 (34%), Positives = 100/195 (51%), Gaps = 7/195 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S LE R+ Y F N  LL +ALTH S S ++ E   RLEFLGD +L   ++ LLF  F   
Sbjct: 4   SQLESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRFGKL 60

Query: 67  KEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
            EG+LS VR N LV  ++  ++A+ L+++  +R+     +       SI AD  E++I A
Sbjct: 61  DEGDLSRVRAN-LVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGA 119

Query: 126 LYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           ++LDGG E A   + + +      +      +DAKT LQE+        P Y V    G 
Sbjct: 120 VFLDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGA 179

Query: 184 DHDPRFTVVVEISGL 198
            H+ +F V   +  L
Sbjct: 180 AHNQQFEVECTVPKL 194


>gi|78065718|ref|YP_368487.1| ribonuclease III [Burkholderia sp. 383]
 gi|77966463|gb|ABB07843.1| RNAse III [Burkholderia sp. 383]
          Length = 408

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/198 (34%), Positives = 101/198 (51%), Gaps = 7/198 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++ E   RLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSQLESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
               EG+LS VR N LV  ++  ++A+ L+++  +R+     +       SI AD  E++
Sbjct: 58  SKLDEGDLSRVRAN-LVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAI 116

Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           I A++LDGG E A   + + +      +      +DAKT LQE+        P Y V   
Sbjct: 117 IGAVFLDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT 176

Query: 181 SGPDHDPRFTVVVEISGL 198
            G  H+ +F V   +  L
Sbjct: 177 HGAAHNQQFEVECTVPKL 194


>gi|296185386|ref|ZP_06853796.1| ribonuclease III [Clostridium carboxidivorans P7]
 gi|296050220|gb|EFG89644.1| ribonuclease III [Clostridium carboxidivorans P7]
          Length = 240

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/218 (35%), Positives = 119/218 (54%), Gaps = 6/218 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE+++   F ++ LL+ ALTHSS ++  +  +  ERLEFLGD +L + IS  LF ++   
Sbjct: 17  LEQKLDVCFEDKELLKIALTHSSYANGKKNIKFNERLEFLGDSVLQISISEYLFLNYSKK 76

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGEL+ R   +V   +  ++A++ DL  +IR+S            SI AD VE++IAA+
Sbjct: 77  TEGELTKRRALIVCENSLYEIAKKWDLGKYIRMSKGEELTGGRERVSILADCVEAIIAAI 136

Query: 127 YLDGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           Y+D G E A  FV   +K   ++A+K+ K   D KT+LQE       V  +Y +    GP
Sbjct: 137 YIDAGFEKAKGFVLTNFKDTIEKAIKN-KIILDYKTKLQEVMQKNGDVDIQYDLMKYEGP 195

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            H  +F   V ++      G   SK+ +EQ AA + LK
Sbjct: 196 PHRRKFYTQVSVNNKVLGNGTGYSKKESEQSAAKKALK 233


>gi|240169618|ref|ZP_04748277.1| ribonuclease III [Mycobacterium kansasii ATCC 12478]
          Length = 241

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/230 (36%), Positives = 119/230 (51%), Gaps = 14/230 (6%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M+A R S L+  +G   ++  LL  ALTH S  ++Y+     + ERLEFLGD +LGL I+
Sbjct: 1   MTASRQSLLDA-LGVDLSDE-LLSLALTHRS--YAYENGGLPTNERLEFLGDAVLGLTIT 56

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELD---LASFIRVSSDLRKDVCSFMTS 113
             L++      EG+L+    S+V+ +  + VAR L    L   I +         +  +S
Sbjct: 57  DELYHRHPDRSEGDLAKLRASVVNTQALADVARNLSDNGLGVHILLGRGEANTGGADKSS 116

Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGV 171
           I AD +ESL+ A+YL  GIEV+   + K +     A  +     D KT LQE   A+   
Sbjct: 117 ILADGMESLLGAIYLQHGIEVSRKVILKLFGPLLDAAATLGAGLDWKTSLQELTAARGLG 176

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           TP Y VT  +GPDHD  FT VV +       GM  SK+ AEQ AA+   K
Sbjct: 177 TPSYLVT-STGPDHDKEFTAVVVVMDAEYGSGMGRSKKEAEQKAASAAYK 225


>gi|154483581|ref|ZP_02026029.1| hypothetical protein EUBVEN_01285 [Eubacterium ventriosum ATCC
           27560]
 gi|149735491|gb|EDM51377.1| hypothetical protein EUBVEN_01285 [Eubacterium ventriosum ATCC
           27560]
          Length = 190

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/181 (35%), Positives = 97/181 (53%), Gaps = 1/181 (0%)

Query: 41  ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
           ERLEFLGD +L LL S  L+ +     EG+++    SLV   T +  ARE+DL  FI + 
Sbjct: 5   ERLEFLGDAVLELLSSEYLYKNMKDMPEGKMTKLRASLVCEPTLAMDAREIDLEDFIYLG 64

Query: 101 SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTE 160
               +       SI +D  E+LI A++LDGGIE A  F+ K+     ++  K   D+KT 
Sbjct: 65  KGEDETGGRKRDSIVSDAFEALIGAIFLDGGIEEAKYFILKF-ALNDIEKKKLFYDSKTV 123

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           LQE  ++       Y++    GPDH+  +    +++G    +G   +K+AAEQ AA + L
Sbjct: 124 LQERVNSVKNGNLVYEIIKEWGPDHNKTYEAAAKLNGKIIGKGQGHTKKAAEQQAAFDAL 183

Query: 221 K 221
           K
Sbjct: 184 K 184


>gi|296876109|ref|ZP_06900163.1| ribonuclease III [Streptococcus parasanguinis ATCC 15912]
 gi|296432820|gb|EFH18613.1| ribonuclease III [Streptococcus parasanguinis ATCC 15912]
          Length = 233

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 113/222 (50%), Gaps = 8/222 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+   LE R    F++ SLL+ A TH+S ++ ++       ERLEFLGD +L L+IS
Sbjct: 1   MEKLQALLLE-RFQIVFSDSSLLDTAFTHTSYANEHRLLKISHNERLEFLGDAVLQLVIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+    +  EG+LS   + +V  E+ +  +R+     +I++     K       +I  
Sbjct: 60  EYLYKEHPNRPEGDLSKFRSMIVREESLAGFSRDCQFDRYIKLGKGEEKSGGRDRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D+ E+ + AL LD G+E    F+ +    + +++G+F +  D KT LQE       V  +
Sbjct: 120 DLFEAFLGALLLDQGVEAVKRFIYQVMIPK-VETGQFSQVIDYKTRLQELLQVHGDVEIQ 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           Y+V   SGP H   F V V ++G     G   SK+ AEQ AA
Sbjct: 179 YQVVSESGPAHAKEFEVEVFVNGQTMGHGHGRSKKLAEQEAA 220


>gi|34497521|ref|NP_901736.1| ribonuclease III [Chromobacterium violaceum ATCC 12472]
 gi|81655793|sp|Q7NWC4|RNC_CHRVO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|34103376|gb|AAQ59738.1| ribonuclease III [Chromobacterium violaceum ATCC 12472]
          Length = 236

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 102/197 (51%), Gaps = 5/197 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           R+  L + + YAF    LL +ALTH S S +   + ER EF+GD IL   ++ +L++ F 
Sbjct: 7   RFRRLSQALDYAFQKPELLRQALTHRSYSSA---NNERFEFVGDSILNYTVARMLYDQFP 63

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGELS    +LV+  T +++A EL L  ++ +     K       SI AD +E+  A
Sbjct: 64  QLTEGELSRLRANLVNQNTLAEIAHELKLGDYLYLGEGELKSGGFNRPSILADALEATFA 123

Query: 125 ALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+  D     A   V + + QR   + + +  +DAKT LQE   A+    P+Y++  +SG
Sbjct: 124 AVSFDADFAAAEQVVRRLYNQRVATIDTTRQAKDAKTRLQEALQARKLALPKYRILSQSG 183

Query: 183 PDHDPRFTVVVEISGLA 199
             H+  F V  ++  +A
Sbjct: 184 EAHEQWFKVECDLGEMA 200


>gi|115314441|ref|YP_763164.1| ribonuclease III [Francisella tularensis subsp. holarctica OSU18]
 gi|122325533|sp|Q0BN07|RNC_FRATO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|115129340|gb|ABI82527.1| ribonuclease III [Francisella tularensis subsp. holarctica OSU18]
          Length = 230

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 121/230 (52%), Gaps = 18/230 (7%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           YS     +GY F + +LL +ALTH S +   +++YERLEFLGD +L  +I+ +L+  F  
Sbjct: 5   YSRFYNILGYNFKDYTLLIRALTHRSKT---KKNYERLEFLGDSVLSFVIAEVLYKQFTD 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS   + LV   T +Q+A  L +  +I + +   +        I  DV E++I A
Sbjct: 62  LAEGKLSQLRSKLVKGTTLAQLASSLKMDEYIILGAS--EQGGHKREKILEDVFEAVIGA 119

Query: 126 LYLDGGIEVAGTFVDKYWK----QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +YLD         + K+++       L + KF +D+K++LQE         PEY +    
Sbjct: 120 IYLDSDFATVKKVILKWYQPIISSINLDTIKF-KDSKSKLQEILLQNALSLPEYSIETID 178

Query: 182 GPDHDPRFTVVV---EISGLAPAQGMDCSKRAAEQVAA---AEVLKREGI 225
           G DH+ +FTVV    +++    AQG   S++ AEQ  A    E+L ++G+
Sbjct: 179 GKDHEQQFTVVAVSKDLNLRVKAQG--TSRKKAEQKTAEKMIEMLSQQGL 226


>gi|88856701|ref|ZP_01131356.1| ribonuclease III [marine actinobacterium PHSC20C1]
 gi|88813998|gb|EAR23865.1| ribonuclease III [marine actinobacterium PHSC20C1]
          Length = 233

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/214 (35%), Positives = 107/214 (50%), Gaps = 13/214 (6%)

Query: 19  NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           N  +L  ALTH S ++      + ERLEFLGD ILG  ++  L+       EG+L+ R  
Sbjct: 21  NPDVLTLALTHRSFAYENGGIANNERLEFLGDSILGQAVTVKLYRDNPELDEGDLAKRRA 80

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           SLVS+   +++AR + L ++IR+     +       SI AD VE++I A YLD G + A 
Sbjct: 81  SLVSSVALAEIARLIGLGAYIRLGKGEEQTGGREKPSILADTVEAIIGAAYLDLGGDAAT 140

Query: 137 TFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFG-VTPEYKVTFRSGPDHDPRFTVVV 193
             V +          +F    D KT LQE A A+ G   P+Y++   SGPDH  RF   +
Sbjct: 141 ALVLRLVAPLLADPERFGAAMDPKTSLQELA-AQLGRGVPDYRIE-DSGPDHSKRFHASL 198

Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
            +S    A G   SK+ AE  AA E       WT
Sbjct: 199 VLSNDVIATGTGSSKKQAEMAAALEA------WT 226


>gi|330815986|ref|YP_004359691.1| Ribonuclease III [Burkholderia gladioli BSR3]
 gi|327368379|gb|AEA59735.1| Ribonuclease III [Burkholderia gladioli BSR3]
          Length = 403

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/198 (34%), Positives = 101/198 (51%), Gaps = 7/198 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++ E   RLEFLGD +L   ++ LLF  F
Sbjct: 1   MPQSQLESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
               EG+LS VR N LV  ++  ++A+ L+++  +R+     +       SI AD  E++
Sbjct: 58  SKLDEGDLSRVRAN-LVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADAFEAI 116

Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           I A++LDGG E A   + + +      +      +DAKT LQE+        P Y V   
Sbjct: 117 IGAVFLDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT 176

Query: 181 SGPDHDPRFTVVVEISGL 198
            G  H+ +F V   +  L
Sbjct: 177 HGAAHNQQFEVECTVPKL 194


>gi|289804515|ref|ZP_06535144.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
          Length = 187

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/183 (35%), Positives = 97/183 (53%), Gaps = 3/183 (1%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102
           +EFLGD IL  +I+  L++ F    EG++S    +LV   T +++ARE DL   +R+   
Sbjct: 1   MEFLGDSILSFVIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPG 60

Query: 103 LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTE 160
             K       SI AD VE+LI  ++LD  I+     +  ++K R   +  G  ++D KT 
Sbjct: 61  ELKSGGFRRESILADTVEALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTR 120

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEV 219
           LQE+   +    P Y V    G  HD  FT+  ++SGL+ P  G   S+R AEQ AA + 
Sbjct: 121 LQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQA 180

Query: 220 LKR 222
           LK+
Sbjct: 181 LKK 183


>gi|312868336|ref|ZP_07728536.1| ribonuclease III [Streptococcus parasanguinis F0405]
 gi|311096081|gb|EFQ54325.1| ribonuclease III [Streptococcus parasanguinis F0405]
          Length = 233

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/214 (31%), Positives = 110/214 (51%), Gaps = 7/214 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
           L +R    F++ SLL+ A TH+S ++ ++       ERLEFLGD +L L+IS  L+    
Sbjct: 8   LSERFQIVFSDSSLLDTAFTHTSYANEHRLLKISHNERLEFLGDAVLQLVISEYLYKEHP 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EG+LS   + +V  E+ +  +R+     +I++     K       +I  D+ E+ + 
Sbjct: 68  NRPEGDLSKFRSMIVREESLAGFSRDCQFDHYIKLGKGEEKSGGRDRDTILGDLFEAFLG 127

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182
           AL LD G+E    F+ +    + +++G+F +  D KT LQE       V  +Y+V   +G
Sbjct: 128 ALLLDQGVEAVKRFIYQVMIPK-VETGQFSQVIDYKTRLQELLQVHGDVEIQYQVVSEAG 186

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           P H   F V V ++G     G   SK+ AEQ AA
Sbjct: 187 PAHAKEFEVEVFVNGQTMGHGHGRSKKLAEQEAA 220


>gi|94311354|ref|YP_584564.1| ribonuclease III [Cupriavidus metallidurans CH34]
 gi|189043335|sp|Q1LKN1|RNC_RALME RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|93355206|gb|ABF09295.1| RNase III [Cupriavidus metallidurans CH34]
          Length = 256

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/185 (34%), Positives = 97/185 (52%), Gaps = 5/185 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L++R+GY F+   LL++ALTH S  HS Q + ERLEFLGD +L   ++ +LF  F    E
Sbjct: 6   LQQRLGYRFSKPELLQQALTHRS--HSAQHN-ERLEFLGDSVLNCAVADMLFGMFGKLDE 62

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    +LV  +   ++A+ L L+  +R+     K       SI AD +E+++ A++L
Sbjct: 63  GDLSRVRANLVKQQALYEIAQMLQLSDALRLGEGELKSGGFRRPSILADALEAIVGAVFL 122

Query: 129 DGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D G + A   + K +      +      +DAKT LQE+        P+Y V    G  H 
Sbjct: 123 DAGFDAARALIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYNVIATHGAAHS 182

Query: 187 PRFTV 191
            +F V
Sbjct: 183 QQFEV 187


>gi|171463192|ref|YP_001797305.1| Ribonuclease III [Polynucleobacter necessarius subsp. necessarius
           STIR1]
 gi|171192730|gb|ACB43691.1| Ribonuclease III [Polynucleobacter necessarius subsp. necessarius
           STIR1]
          Length = 263

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/186 (36%), Positives = 102/186 (54%), Gaps = 7/186 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L++R+GY F    LL +ALTH S  HS +++ ERLEFLGD IL  +++ +L+  +    E
Sbjct: 12  LQERLGYTFKKPELLNQALTHRS--HS-KKNNERLEFLGDSILNCVVAEMLYERYSDLDE 68

Query: 69  GELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           G+LS VR N LV  +   ++A+ L L+ ++R+     K       SI AD +E++  A++
Sbjct: 69  GDLSRVRAN-LVKQQALYEIAQTLSLSDYLRLGEGELKSGGFRRPSILADTLEAVTGAIF 127

Query: 128 LDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           LDGG E A T + K +      +      +D KT LQE   +     P Y VT  +G  H
Sbjct: 128 LDGGFEAAKTSLRKLYSIILAHVDPKTLGKDDKTLLQECLQSYQLPLPAYNVTGTTGAAH 187

Query: 186 DPRFTV 191
           + +F V
Sbjct: 188 NQQFEV 193


>gi|313892793|ref|ZP_07826374.1| ribonuclease III [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442724|gb|EFR61135.1| ribonuclease III [Veillonella sp. oral taxon 158 str. F0412]
          Length = 246

 Score = 99.4 bits (246), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/218 (33%), Positives = 117/218 (53%), Gaps = 8/218 (3%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQESY----ERLEFLGDRILGLLISTLLFNHFDSAK 67
           R+    ++ S+++ A TH+S ++ ++  +    +RLEFLGD +L L+I   LF ++    
Sbjct: 25  RLDIPVSDISIIDCAFTHTSYANEHKSKHINHNQRLEFLGDAVLDLIIGEYLFKNYPDMA 84

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG L+    + V  ++ + V+R L L  ++ +    R    +   SI AD  ESLI A+Y
Sbjct: 85  EGNLTKIKAATVCEDSLASVSRSLQLGQYLLLGHGERASGGNDRNSILADTFESLIGAIY 144

Query: 128 LDGGIEVAGTFVDKY---WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           +    + A TFV K+   + ++AL+ GK   D KT LQE+          Y++   SGPD
Sbjct: 145 ISTDYQTAMTFVLKHLTIYIKQALE-GKRGNDYKTLLQEYVQRDGDKHIVYRLLSESGPD 203

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           H   F +VVEI+G+    G   SK+ AEQ AA   L++
Sbjct: 204 HAKTFHIVVEINGVTYEAGSGKSKKIAEQHAAQLTLEK 241


>gi|269215480|ref|ZP_06159334.1| ribonuclease III [Slackia exigua ATCC 700122]
 gi|269130967|gb|EEZ62042.1| ribonuclease III [Slackia exigua ATCC 700122]
          Length = 312

 Score = 99.4 bits (246), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/211 (35%), Positives = 109/211 (51%), Gaps = 4/211 (1%)

Query: 13  IGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
           IG AF +  +L  A+TH S +     + SYERLEFLGD ILG +++   F+ +    EG 
Sbjct: 18  IGVAFDDIDILLAAITHPSATEGKPVKFSYERLEFLGDSILGAIVANEAFHAYPEIDEGG 77

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           L+    +LVS  + S VA +L  A  I   S  R      + S   +V E+L+AAL+LD 
Sbjct: 78  LTRIKVALVSGSSLSDVAAKLGFADIIVFGSSERGTGRRGLHSALENVYEALVAALFLDK 137

Query: 131 GIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
           G++ A  FV +    R  ++  +   + K+ LQE    + G+TP YK+    GP HD  F
Sbjct: 138 GMDGARDFVRRTLIPRMDIEMAREPENPKSALQEKLQEE-GITPTYKLVETQGPPHDRTF 196

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
              V     A AQG+  +K+ +E  AA   L
Sbjct: 197 VSQVFAGLTALAQGIGRTKKESESQAAKAAL 227


>gi|134295164|ref|YP_001118899.1| ribonuclease III [Burkholderia vietnamiensis G4]
 gi|134138321|gb|ABO54064.1| RNAse III [Burkholderia vietnamiensis G4]
          Length = 416

 Score = 99.4 bits (246), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/198 (34%), Positives = 101/198 (51%), Gaps = 7/198 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++ E   RLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSQLESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
               EG+LS VR N LV  ++  ++A+ L+++  +R+     +       SI AD  E++
Sbjct: 58  GKLDEGDLSRVRAN-LVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAI 116

Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           I A++LDGG E A   + + +      +      +DAKT LQE+        P Y V   
Sbjct: 117 IGAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT 176

Query: 181 SGPDHDPRFTVVVEISGL 198
            G  H+ +F V   +  L
Sbjct: 177 HGAAHNQQFEVECTVPKL 194


>gi|296331168|ref|ZP_06873642.1| ribonuclease III [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|296151812|gb|EFG92687.1| ribonuclease III [Bacillus subtilis subsp. spizizenii ATCC 6633]
          Length = 213

 Score = 99.4 bits (246), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/204 (33%), Positives = 101/204 (49%), Gaps = 7/204 (3%)

Query: 25  KALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
           +A THSS  + ++    E  ERLEFLGD +L L IS  LF  + +  EG+L+    ++V 
Sbjct: 3   QAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISRFLFAKYPAMSEGDLTKLRAAIVC 62

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140
             +   +A EL     + +             ++ ADV E+ I ALYLD G+E   +F+ 
Sbjct: 63  EPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFEAFIGALYLDQGLEPVESFLK 122

Query: 141 KYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
            Y   + +  G F    D K++LQE+       + EYK+T   GP H+  F  +V + G 
Sbjct: 123 VYVFPK-INDGAFSHVMDFKSQLQEYVQRDGKGSLEYKITNEKGPAHNREFEAIVSLKGE 181

Query: 199 APAQGMDCSKRAAEQVAAAEVLKR 222
               G   SK+ AEQ AA E L +
Sbjct: 182 PLGVGNGRSKKEAEQHAAQEALAK 205


>gi|115351064|ref|YP_772903.1| ribonuclease III [Burkholderia ambifaria AMMD]
 gi|115281052|gb|ABI86569.1| RNAse III [Burkholderia ambifaria AMMD]
          Length = 425

 Score = 99.0 bits (245), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/198 (34%), Positives = 101/198 (51%), Gaps = 7/198 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++ E   RLEFLGD +L   ++ LLF  F
Sbjct: 1   MPPSQLESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
               EG+LS VR N LV  ++  ++A+ L+++  +R+     +       SI AD  E++
Sbjct: 58  SKLDEGDLSRVRAN-LVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADAFEAI 116

Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           I A++LDGG E A   + + +      +      +DAKT LQE+        P Y V   
Sbjct: 117 IGAVFLDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT 176

Query: 181 SGPDHDPRFTVVVEISGL 198
            G  H+ +F V   +  L
Sbjct: 177 HGAAHNQQFEVECTVPKL 194


>gi|300780910|ref|ZP_07090764.1| ribonuclease III [Corynebacterium genitalium ATCC 33030]
 gi|300532617|gb|EFK53678.1| ribonuclease III [Corynebacterium genitalium ATCC 33030]
          Length = 252

 Score = 99.0 bits (245), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 113/222 (50%), Gaps = 5/222 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTL 58
            + + +++L +R+G       LL+ ALTH S +  H    + ERLEF+GD +LGL I+  
Sbjct: 19  FAGIDHASLLERLGVDV-EPDLLKLALTHRSFANEHGTLPNNERLEFVGDAVLGLTIANE 77

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF+ F S  E +LS     +VS    + VAR +DL + + +             SI AD 
Sbjct: 78  LFDRFPSRPESDLSPMRARIVSRYGLADVARSIDLGAHVLLGKGEEATGGRKKDSILADT 137

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
            E+++ A+Y   G +V    + + +  + +++  + +D KTELQE      G  P Y  T
Sbjct: 138 TEAVLGAIYRQHGFDVTRDVITRLFDDK-IENAHWIQDWKTELQERVAELGGNPPVYTAT 196

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            + GP+H+  FT  V I G+    G   +K+ AEQ +A E  
Sbjct: 197 AK-GPEHEQIFTAEVAIDGVRRGVGRGQNKKTAEQNSAREAF 237


>gi|89255958|ref|YP_513320.1| ribonuclease III [Francisella tularensis subsp. holarctica LVS]
 gi|187931188|ref|YP_001891172.1| ribonuclease III [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|254367315|ref|ZP_04983341.1| ribonuclease III [Francisella tularensis subsp. holarctica 257]
 gi|254368791|ref|ZP_04984804.1| hypothetical protein FTAG_00596 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|122501056|sp|Q2A4N2|RNC_FRATH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|238691551|sp|B2SFY4|RNC_FRATM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|89143789|emb|CAJ78994.1| Ribonuclease III [Francisella tularensis subsp. holarctica LVS]
 gi|134253131|gb|EBA52225.1| ribonuclease III [Francisella tularensis subsp. holarctica 257]
 gi|157121712|gb|EDO65882.1| hypothetical protein FTAG_00596 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|187712097|gb|ACD30394.1| ribonuclease III [Francisella tularensis subsp. mediasiatica
           FSC147]
          Length = 230

 Score = 99.0 bits (245), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 118/230 (51%), Gaps = 18/230 (7%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           YS     +GY F + +LL +ALTH S +   +++YERLEFLGD +L  +I+ +L+  F  
Sbjct: 5   YSRFYNILGYNFKDYTLLIRALTHRSKT---KKNYERLEFLGDSVLSFVIAEVLYKQFTD 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS   + LV   T +Q+A  L +  +I + +   +        I  DV E++I A
Sbjct: 62  LAEGKLSQLRSKLVKGTTLAQLASSLKMDEYIILGAS--EQGGHKREKILEDVFEAVIGA 119

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR----RDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +YLD         + K W Q  + S        +D+K++LQE         PEY +    
Sbjct: 120 IYLDSDFATVKKVILK-WYQPIISSINLDTIKVKDSKSKLQEILLQNALSLPEYSIETID 178

Query: 182 GPDHDPRFTVVV---EISGLAPAQGMDCSKRAAEQVAA---AEVLKREGI 225
           G DH+ +FTVV    +++    AQG   S++ AEQ  A    E+L ++G+
Sbjct: 179 GKDHEQQFTVVAVSKDLNLRVKAQG--TSRKKAEQKTAEKMIEMLSQQGL 226


>gi|254993548|ref|ZP_05275738.1| ribonuclease III [Listeria monocytogenes FSL J2-064]
          Length = 206

 Score = 99.0 bits (245), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 107/205 (52%), Gaps = 7/205 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++  L++ +G+ F +  LL++A THSS  + ++    +  ERLEFLGD +L L +S  LF
Sbjct: 3   QWEELQESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSNYLF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N +    EG ++    ++V   +  + A  +  + ++R+     K       ++ ADV E
Sbjct: 63  NKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178
           S I ALYLD GI+   TF+++    + + +G + +  D KT+LQE       V  EY + 
Sbjct: 123 SFIGALYLDNGIDKVVTFLERVIFPK-IDAGAYLQTVDYKTQLQEIVQRDRDVLIEYDIL 181

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQG 203
             +GP H+  F   V ++G    +G
Sbjct: 182 GETGPAHNKAFDAQVIVNGQVLGKG 206


>gi|238854774|ref|ZP_04645104.1| ribonuclease III [Lactobacillus jensenii 269-3]
 gi|260664006|ref|ZP_05864859.1| ribonuclease III [Lactobacillus jensenii SJ-7A-US]
 gi|282933852|ref|ZP_06339200.1| ribonuclease III [Lactobacillus jensenii 208-1]
 gi|238832564|gb|EEQ24871.1| ribonuclease III [Lactobacillus jensenii 269-3]
 gi|260561892|gb|EEX27861.1| ribonuclease III [Lactobacillus jensenii SJ-7A-US]
 gi|281301941|gb|EFA94195.1| ribonuclease III [Lactobacillus jensenii 208-1]
          Length = 230

 Score = 99.0 bits (245), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/210 (34%), Positives = 109/210 (51%), Gaps = 11/210 (5%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           G  F N +LLE+A THSS  + + +    +YE+LEFLGD +L L +S  L+ HF S  EG
Sbjct: 15  GIKFKNETLLEEAFTHSSYVNEHPKESVGNYEKLEFLGDAVLELAVSDYLYRHFPSLNEG 74

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           +L+   +++V  E  S  A E    + I +     K       ++  DV E+   AL+LD
Sbjct: 75  QLTRLRSNIVRTEGFSGFAIECGFPAEINLGHGEEKTGARERKTLLEDVFEAFNGALFLD 134

Query: 130 GGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG-PDHD 186
            G++    F+ K      + SG+F   RD KT+LQE       +  EY+V   S  P + 
Sbjct: 135 QGMDAVQKFL-KLTVYPLIDSGEFTDSRDYKTDLQELLQVNGAIKIEYQVLEESKLPSN- 192

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             F V + + G   ++G   +K+AAEQVAA
Sbjct: 193 --FKVALLVEGKKISEGSGHNKKAAEQVAA 220


>gi|238019508|ref|ZP_04599934.1| hypothetical protein VEIDISOL_01377 [Veillonella dispar ATCC 17748]
 gi|237864207|gb|EEP65497.1| hypothetical protein VEIDISOL_01377 [Veillonella dispar ATCC 17748]
          Length = 245

 Score = 99.0 bits (245), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/218 (33%), Positives = 117/218 (53%), Gaps = 8/218 (3%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQESY----ERLEFLGDRILGLLISTLLFNHFDSAK 67
           R+    ++ S+L+ A TH+S ++ ++  +    +RLEFLGD +L L+I   LF  +    
Sbjct: 25  RLDIPVSDISILDCAFTHTSYANEHKSKHINHNQRLEFLGDAVLDLIIGEYLFKTYPDMA 84

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG+L+    + V  ++ + V+R L L  ++ +    R    +   SI AD  ESLI A+Y
Sbjct: 85  EGDLTKIKAATVCEDSLASVSRSLQLGQYLLLGHGERASGGNNRNSILADTFESLIGAIY 144

Query: 128 LDGGIEVAGTFVDKY---WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           +    + A  FV K+   + ++AL+ GK  +D KT LQE+          Y++   SGPD
Sbjct: 145 ISTDYQTAMNFVLKHLITYIKQALE-GKRGKDYKTLLQEYVQRDGDKHTVYRLLSESGPD 203

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           H   F +VVEI+G+    G   SK+ AEQ AA   L++
Sbjct: 204 HAKTFHMVVEINGVTYEAGSGKSKKIAEQHAAQLTLEK 241


>gi|260886608|ref|ZP_05897871.1| ribonuclease III [Selenomonas sputigena ATCC 35185]
 gi|330839558|ref|YP_004414138.1| ribonuclease III [Selenomonas sputigena ATCC 35185]
 gi|260863751|gb|EEX78251.1| ribonuclease III [Selenomonas sputigena ATCC 35185]
 gi|329747322|gb|AEC00679.1| ribonuclease III [Selenomonas sputigena ATCC 35185]
          Length = 242

 Score = 99.0 bits (245), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/220 (35%), Positives = 109/220 (49%), Gaps = 6/220 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFD 64
           L   +G  F N  LL +ALTH+S ++  +       ERLEFLGD +L L  ST LF  F 
Sbjct: 19  LSDHLGIEFQNIVLLHEALTHTSYANEAKNKGVVHNERLEFLGDAVLELATSTYLFERFP 78

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EGEL+    S+V   T S+ A EL+L  ++ +             S+ AD  E++I 
Sbjct: 79  NRPEGELTKARASIVREATLSRRAAELELGEYLLLGHGEASMGGGHRPSMLADAFEAVIG 138

Query: 125 ALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YLD G + A  +V K      L   SG+  +D KT LQE           Y++   +G
Sbjct: 139 AIYLDRGWQTAYDYVLKQLHDELLTIDSGENMKDYKTTLQEVVQKHVDSKIAYELLTETG 198

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           PDHD  F   V I+      G   +K+ AEQ AA E L++
Sbjct: 199 PDHDKTFEFAVRINDAVYGTGKGRNKKEAEQGAAREALRK 238


>gi|227530552|ref|ZP_03960601.1| ribonuclease III [Lactobacillus vaginalis ATCC 49540]
 gi|227349558|gb|EEJ39849.1| ribonuclease III [Lactobacillus vaginalis ATCC 49540]
          Length = 251

 Score = 99.0 bits (245), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 106/220 (48%), Gaps = 7/220 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSI--SHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
           L K     F N  LL +A T +S    H +Q  + YER+EFLGD +L L++S  ++  F 
Sbjct: 27  LAKEFDIHFTNPDLLAEAFTQASYVNEHPHQGLKFYERIEFLGDAVLELIVSEYIYKRFP 86

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              +G+L+    ++V  ++ S+ A+E     +IR+              +  D+ ES I 
Sbjct: 87  ELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGHGEEMAGARQRPGLLCDIFESFIG 146

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182
           ALYLD G      FV +    + L  G F    DAKT LQE+      V  EY +   SG
Sbjct: 147 ALYLDQGRPAVEKFVRRVIFPK-LDLGWFDHAVDAKTSLQEFLQRDGDVDIEYHLLQESG 205

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            ++DP F V V   G    +G   SK+ AE  AA++ L +
Sbjct: 206 TENDPEFKVNVSADGKVIGEGTGSSKKHAEMKAASQALNK 245


>gi|194290152|ref|YP_002006059.1| ribonuclease iii [Cupriavidus taiwanensis LMG 19424]
 gi|238692743|sp|B3R1Z9|RNC_CUPTR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|193223987|emb|CAQ69996.1| Ribonuclease III [Cupriavidus taiwanensis LMG 19424]
          Length = 256

 Score = 99.0 bits (245), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 100/197 (50%), Gaps = 5/197 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +    L++R+GY F+   LL++ALTH S  HS Q + ERLEFLGD +L   ++ +L+  F
Sbjct: 1   MNLDALQQRLGYRFSKPELLQQALTHRS--HSAQHN-ERLEFLGDSVLNCAVADMLYGMF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  +   ++A+ L L+  +R+     K       SI AD +E+++
Sbjct: 58  GKLDEGDLSRVRANLVKQQALYEIAQMLQLSDTLRLGEGELKSGGFRRPSILADALEAIV 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LD G + A   + K +      +      +DAKT LQE+        P+Y V    
Sbjct: 118 GAVFLDAGFDAARALIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYNVIATH 177

Query: 182 GPDHDPRFTVVVEISGL 198
           G  H  +F V   +  L
Sbjct: 178 GAAHSQQFEVECTVPKL 194


>gi|172060069|ref|YP_001807721.1| ribonuclease III [Burkholderia ambifaria MC40-6]
 gi|171992586|gb|ACB63505.1| Ribonuclease III [Burkholderia ambifaria MC40-6]
          Length = 425

 Score = 99.0 bits (245), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 68/198 (34%), Positives = 101/198 (51%), Gaps = 7/198 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++ E   RLEFLGD +L   ++ LLF  F
Sbjct: 1   MPPSQLESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
               EG+LS VR N LV  ++  ++A+ L+++  +R+     +       SI AD  E++
Sbjct: 58  SKLDEGDLSRVRAN-LVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADAFEAI 116

Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           I A++LDGG E A   + + +      +      +DAKT LQE+        P Y V   
Sbjct: 117 IGAVFLDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT 176

Query: 181 SGPDHDPRFTVVVEISGL 198
            G  H+ +F V   +  L
Sbjct: 177 HGAAHNQQFEVECTVPKL 194


>gi|194366747|ref|YP_002029357.1| ribonuclease III [Stenotrophomonas maltophilia R551-3]
 gi|194349551|gb|ACF52674.1| Ribonuclease III [Stenotrophomonas maltophilia R551-3]
          Length = 226

 Score = 99.0 bits (245), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/214 (35%), Positives = 115/214 (53%), Gaps = 7/214 (3%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           IG+AF++ +LL++ALTH S    + E   RLEFLGD I+ ++ +  L+  +  A EG ++
Sbjct: 12  IGHAFSDPALLKQALTHRSAGAPHNE---RLEFLGDSIVNMMAAEALYRRWPKADEGAMT 68

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                LV     + + R L+L   + +     K       SI AD VE+++AA+YLD G 
Sbjct: 69  RARAELVREGALAVIGRTLELGERLTLGPGEMKSGGHRRDSILADAVEAVVAAIYLDAGF 128

Query: 133 EVAGTFVDKYWKQ--RALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
           E     V  ++     AL  SG+  +D KT LQEW  A+    P+Y++   SG DH   F
Sbjct: 129 EACRAVVLPWFSASIEALPASGRPEKDPKTRLQEWLQARQKALPQYELVSESGDDHAKHF 188

Query: 190 TVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKR 222
            V   ++  A + +G   S+R AEQ AAA VL++
Sbjct: 189 RVRCIVADPAASTEGEGASRRLAEQQAAAAVLEQ 222


>gi|83652594|gb|ABC36657.1| ribonuclease III, putative [Burkholderia thailandensis E264]
          Length = 487

 Score = 99.0 bits (245), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 68/199 (34%), Positives = 102/199 (51%), Gaps = 7/199 (3%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           ++  S LE R+ Y F N  LL +ALTH S S ++ E   RLEFLGD +L   ++ LLF  
Sbjct: 18  SMPLSQLESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQR 74

Query: 63  FDSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           F    EG+LS VR N LV  ++  ++A+ L+++  +R+     +       SI AD  E+
Sbjct: 75  FSKLDEGDLSRVRAN-LVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEA 133

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           +I A++LDGG E A   + + +      +      +DAKT LQE+        P Y V  
Sbjct: 134 IIGAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVA 193

Query: 180 RSGPDHDPRFTVVVEISGL 198
             G  H+ +F V   +  L
Sbjct: 194 THGAAHNQQFEVECTVPKL 212


>gi|310828474|ref|YP_003960831.1| ribonuclease III [Eubacterium limosum KIST612]
 gi|308740208|gb|ADO37868.1| ribonuclease III [Eubacterium limosum KIST612]
          Length = 222

 Score = 98.6 bits (244), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 117/220 (53%), Gaps = 16/220 (7%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +E RI Y F ++ LL+ ALTHSS S +   + ERLEFLGD +L L+IS  L+  ++   E
Sbjct: 4   IEDRIAYTFKDKELLKVALTHSSHSGTTTNN-ERLEFLGDAVLELIISEYLY-KYNKLSE 61

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFI-----RVSSDLRKDVCSFMTSIQADVVESLI 123
           G+++   +++V AE+ SQ A +L+L  ++      + +  RK   +      A+  E+++
Sbjct: 62  GKMTKIRSNIVCAESLSQAASDLNLGEYMLLGKGEIVTGGRKRKSNL-----ANAFEAVM 116

Query: 124 AALYLDGGIEVAGTFVDKYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            A++LD   +     V    ++    AL SG   +D KTELQE          EY +   
Sbjct: 117 GAVFLDSDYDTTKKVVLGTLEKNIELAL-SGGLIKDYKTELQEQIQKHSDNAIEYVLEKS 175

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            GP+H+  F + +  +G+  ++G   SK+ AEQ AA   L
Sbjct: 176 EGPEHNKTFFIDLTFNGVVVSKGTGKSKKEAEQNAAKNYL 215


>gi|126438815|ref|YP_001059800.1| ribonuclease III [Burkholderia pseudomallei 668]
 gi|126218308|gb|ABN81814.1| ribonuclease III [Burkholderia pseudomallei 668]
          Length = 467

 Score = 98.6 bits (244), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 68/198 (34%), Positives = 101/198 (51%), Gaps = 7/198 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++ E   RLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSQLESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
               EG+LS VR N LV  ++  ++A+ L+++  +R+     +       SI AD  E++
Sbjct: 58  GKLDEGDLSRVRAN-LVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAI 116

Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           I A++LDGG E A   + + +      +      +DAKT LQE+        P Y V   
Sbjct: 117 IGAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT 176

Query: 181 SGPDHDPRFTVVVEISGL 198
            G  H+ +F V   +  L
Sbjct: 177 HGAAHNQQFEVECTVPKL 194


>gi|113868517|ref|YP_727006.1| ribonuclease III [Ralstonia eutropha H16]
 gi|123133802|sp|Q0K8N3|RNC_RALEH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|113527293|emb|CAJ93638.1| dsRNA-specific ribonuclease [Ralstonia eutropha H16]
          Length = 256

 Score = 98.6 bits (244), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 100/197 (50%), Gaps = 5/197 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +    L++R+GY F+   LL++ALTH S  HS Q + ERLEFLGD +L   ++ +L+  F
Sbjct: 1   MNLDALQQRLGYRFSKPELLQQALTHRS--HSAQHN-ERLEFLGDSVLNCAVADMLYGMF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  +   ++A+ L L+  +R+     K       SI AD +E+++
Sbjct: 58  GKLDEGDLSRVRANLVKQQALYEIAQMLQLSDTLRLGEGELKSGGFRRPSILADALEAIV 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LD G + A   + K +      +      +DAKT LQE+        P+Y V    
Sbjct: 118 GAVFLDAGFDAARALIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYNVIATH 177

Query: 182 GPDHDPRFTVVVEISGL 198
           G  H  +F V   +  L
Sbjct: 178 GAAHSQQFEVECTVPKL 194


>gi|332184579|gb|AEE26833.1| Ribonuclease III [Francisella cf. novicida 3523]
          Length = 230

 Score = 98.6 bits (244), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 118/230 (51%), Gaps = 18/230 (7%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           YS     +GY F + +LL +ALTH S +   +++YERLEFLGD +L  +I+ +L+  F  
Sbjct: 5   YSRFYNILGYKFKDYTLLIRALTHRSKT---KKNYERLEFLGDSVLSFVIAEVLYKQFTD 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS   + LV   T +Q+A  L +  +I + +   +        I  DV E++I A
Sbjct: 62  LDEGKLSQLRSKLVKGATLAQLASSLKMDEYIILGAS--EQGGHKREKILEDVFEAVIGA 119

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR----RDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +YLD         + + W Q  + S        +D+K++LQE         PEY +    
Sbjct: 120 IYLDSDFATVKKVILR-WYQPIILSINLDTIKVKDSKSKLQEILLQNALSLPEYSIETIE 178

Query: 182 GPDHDPRFTVVV---EISGLAPAQGMDCSKRAAEQVAA---AEVLKREGI 225
           G DH+  FTVV    +++    AQG   S++ AEQ AA    E+L ++G+
Sbjct: 179 GKDHEQEFTVVAMSKDLNLQVKAQG--TSRKKAEQKAAEKMIEMLSQQGL 226


>gi|161723174|ref|YP_442265.2| ribonuclease III [Burkholderia thailandensis E264]
          Length = 469

 Score = 98.6 bits (244), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 68/198 (34%), Positives = 101/198 (51%), Gaps = 7/198 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++ E   RLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSQLESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
               EG+LS VR N LV  ++  ++A+ L+++  +R+     +       SI AD  E++
Sbjct: 58  SKLDEGDLSRVRAN-LVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAI 116

Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           I A++LDGG E A   + + +      +      +DAKT LQE+        P Y V   
Sbjct: 117 IGAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT 176

Query: 181 SGPDHDPRFTVVVEISGL 198
            G  H+ +F V   +  L
Sbjct: 177 HGAAHNQQFEVECTVPKL 194


>gi|53725351|ref|YP_102339.1| ribonuclease III [Burkholderia mallei ATCC 23344]
 gi|121599423|ref|YP_993770.1| ribonuclease III [Burkholderia mallei SAVP1]
 gi|124385463|ref|YP_001028764.1| ribonuclease III [Burkholderia mallei NCTC 10229]
 gi|126450086|ref|YP_001081328.1| ribonuclease III [Burkholderia mallei NCTC 10247]
 gi|167000779|ref|ZP_02266586.1| ribonuclease III [Burkholderia mallei PRL-20]
 gi|238562760|ref|ZP_00439921.2| ribonuclease III [Burkholderia mallei GB8 horse 4]
 gi|254178423|ref|ZP_04885078.1| ribonuclease III [Burkholderia mallei ATCC 10399]
 gi|254199232|ref|ZP_04905598.1| ribonuclease III [Burkholderia mallei FMH]
 gi|254205539|ref|ZP_04911891.1| ribonuclease III [Burkholderia mallei JHU]
 gi|254357706|ref|ZP_04973979.1| ribonuclease III [Burkholderia mallei 2002721280]
 gi|52428774|gb|AAU49367.1| ribonuclease III/hypothetical protein, fusion [Burkholderia mallei
           ATCC 23344]
 gi|121228233|gb|ABM50751.1| ribonuclease III [Burkholderia mallei SAVP1]
 gi|124293483|gb|ABN02752.1| ribonuclease III/hypothetical protein [Burkholderia mallei NCTC
           10229]
 gi|126242956|gb|ABO06049.1| ribonuclease III [Burkholderia mallei NCTC 10247]
 gi|147748828|gb|EDK55902.1| ribonuclease III [Burkholderia mallei FMH]
 gi|147752982|gb|EDK60047.1| ribonuclease III [Burkholderia mallei JHU]
 gi|148026833|gb|EDK84854.1| ribonuclease III [Burkholderia mallei 2002721280]
 gi|160699462|gb|EDP89432.1| ribonuclease III [Burkholderia mallei ATCC 10399]
 gi|238522001|gb|EEP85448.1| ribonuclease III [Burkholderia mallei GB8 horse 4]
 gi|243063329|gb|EES45515.1| ribonuclease III [Burkholderia mallei PRL-20]
          Length = 467

 Score = 98.6 bits (244), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 68/198 (34%), Positives = 101/198 (51%), Gaps = 7/198 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++ E   RLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSQLESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
               EG+LS VR N LV  ++  ++A+ L+++  +R+     +       SI AD  E++
Sbjct: 58  GKLDEGDLSRVRAN-LVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAI 116

Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           I A++LDGG E A   + + +      +      +DAKT LQE+        P Y V   
Sbjct: 117 IGAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT 176

Query: 181 SGPDHDPRFTVVVEISGL 198
            G  H+ +F V   +  L
Sbjct: 177 HGAAHNQQFEVECTVPKL 194


>gi|294782048|ref|ZP_06747374.1| ribonuclease III [Fusobacterium sp. 1_1_41FAA]
 gi|294480689|gb|EFG28464.1| ribonuclease III [Fusobacterium sp. 1_1_41FAA]
          Length = 234

 Score = 98.6 bits (244), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 102/191 (53%), Gaps = 6/191 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           LE ++ Y F NR+LL+ AL H S+ +  +E    + ERLE LGD +L L+++  L+ ++ 
Sbjct: 7   LEHKLNYYFNNRNLLKTALLHKSLGNEKKEYKNQNNERLELLGDAVLDLIVAEYLYRNYK 66

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           SA EG ++     +VS    ++++R++ L  F+ +S            SI AD  E+++ 
Sbjct: 67  SASEGTIAKLKAMIVSEPILAKISRQIGLGKFLMLSKGEILSGGRNRESILADAFEAVLG 126

Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+Y+D  +E A +F   + +Q    ++  +   D K+ LQE+    F   P Y++    G
Sbjct: 127 AVYMDSNLEDARSFALNHIEQYITHIEEDEDILDFKSILQEYVQKNFKTVPTYELISEKG 186

Query: 183 PDHDPRFTVVV 193
           PDH   F + V
Sbjct: 187 PDHMKEFEIQV 197


>gi|126454458|ref|YP_001067087.1| ribonuclease III [Burkholderia pseudomallei 1106a]
 gi|167825159|ref|ZP_02456630.1| ribonuclease III [Burkholderia pseudomallei 9]
 gi|167846656|ref|ZP_02472164.1| ribonuclease III [Burkholderia pseudomallei B7210]
 gi|167911876|ref|ZP_02498967.1| ribonuclease III [Burkholderia pseudomallei 112]
 gi|242317956|ref|ZP_04816972.1| ribonuclease III [Burkholderia pseudomallei 1106b]
 gi|254191245|ref|ZP_04897749.1| ribonuclease III [Burkholderia pseudomallei Pasteur 52237]
 gi|254195715|ref|ZP_04902141.1| ribonuclease III [Burkholderia pseudomallei S13]
 gi|254296871|ref|ZP_04964324.1| ribonuclease III [Burkholderia pseudomallei 406e]
 gi|126228100|gb|ABN91640.1| ribonuclease III [Burkholderia pseudomallei 1106a]
 gi|157808000|gb|EDO85170.1| ribonuclease III [Burkholderia pseudomallei 406e]
 gi|157938917|gb|EDO94587.1| ribonuclease III [Burkholderia pseudomallei Pasteur 52237]
 gi|169652460|gb|EDS85153.1| ribonuclease III [Burkholderia pseudomallei S13]
 gi|242141195|gb|EES27597.1| ribonuclease III [Burkholderia pseudomallei 1106b]
          Length = 467

 Score = 98.6 bits (244), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 68/198 (34%), Positives = 101/198 (51%), Gaps = 7/198 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++ E   RLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSQLESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
               EG+LS VR N LV  ++  ++A+ L+++  +R+     +       SI AD  E++
Sbjct: 58  GKLDEGDLSRVRAN-LVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAI 116

Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           I A++LDGG E A   + + +      +      +DAKT LQE+        P Y V   
Sbjct: 117 IGAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT 176

Query: 181 SGPDHDPRFTVVVEISGL 198
            G  H+ +F V   +  L
Sbjct: 177 HGAAHNQQFEVECTVPKL 194


>gi|76811515|ref|YP_334276.1| ribonuclease III [Burkholderia pseudomallei 1710b]
 gi|167739551|ref|ZP_02412325.1| ribonuclease III [Burkholderia pseudomallei 14]
 gi|254258167|ref|ZP_04949221.1| ribonuclease III [Burkholderia pseudomallei 1710a]
 gi|76580968|gb|ABA50443.1| ribonuclease III [Burkholderia pseudomallei 1710b]
 gi|254216856|gb|EET06240.1| ribonuclease III [Burkholderia pseudomallei 1710a]
          Length = 467

 Score = 98.6 bits (244), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 68/198 (34%), Positives = 101/198 (51%), Gaps = 7/198 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++ E   RLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSQLESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
               EG+LS VR N LV  ++  ++A+ L+++  +R+     +       SI AD  E++
Sbjct: 58  GKLDEGDLSRVRAN-LVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAI 116

Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           I A++LDGG E A   + + +      +      +DAKT LQE+        P Y V   
Sbjct: 117 IGAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT 176

Query: 181 SGPDHDPRFTVVVEISGL 198
            G  H+ +F V   +  L
Sbjct: 177 HGAAHNQQFEVECTVPKL 194


>gi|254184210|ref|ZP_04890800.1| ribonuclease III [Burkholderia pseudomallei 1655]
 gi|184214741|gb|EDU11784.1| ribonuclease III [Burkholderia pseudomallei 1655]
          Length = 467

 Score = 98.6 bits (244), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 68/198 (34%), Positives = 101/198 (51%), Gaps = 7/198 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++ E   RLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSQLESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
               EG+LS VR N LV  ++  ++A+ L+++  +R+     +       SI AD  E++
Sbjct: 58  GKLDEGDLSRVRAN-LVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAI 116

Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           I A++LDGG E A   + + +      +      +DAKT LQE+        P Y V   
Sbjct: 117 IGAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT 176

Query: 181 SGPDHDPRFTVVVEISGL 198
            G  H+ +F V   +  L
Sbjct: 177 HGAAHNQQFEVECTVPKL 194


>gi|134277308|ref|ZP_01764023.1| ribonuclease III [Burkholderia pseudomallei 305]
 gi|134250958|gb|EBA51037.1| ribonuclease III [Burkholderia pseudomallei 305]
          Length = 467

 Score = 98.6 bits (244), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 68/198 (34%), Positives = 101/198 (51%), Gaps = 7/198 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++ E   RLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSQLESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
               EG+LS VR N LV  ++  ++A+ L+++  +R+     +       SI AD  E++
Sbjct: 58  GKLDEGDLSRVRAN-LVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAI 116

Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           I A++LDGG E A   + + +      +      +DAKT LQE+        P Y V   
Sbjct: 117 IGAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT 176

Query: 181 SGPDHDPRFTVVVEISGL 198
            G  H+ +F V   +  L
Sbjct: 177 HGAAHNQQFEVECTVPKL 194


>gi|53720035|ref|YP_109021.1| ribonuclease III [Burkholderia pseudomallei K96243]
 gi|167816752|ref|ZP_02448432.1| ribonuclease III [Burkholderia pseudomallei 91]
 gi|167895244|ref|ZP_02482646.1| ribonuclease III [Burkholderia pseudomallei 7894]
 gi|167919873|ref|ZP_02506964.1| ribonuclease III [Burkholderia pseudomallei BCC215]
 gi|52210449|emb|CAH36432.1| ribonuclease III [Burkholderia pseudomallei K96243]
          Length = 467

 Score = 98.6 bits (244), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 68/198 (34%), Positives = 101/198 (51%), Gaps = 7/198 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++ E   RLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSQLESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
               EG+LS VR N LV  ++  ++A+ L+++  +R+     +       SI AD  E++
Sbjct: 58  GKLDEGDLSRVRAN-LVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAI 116

Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           I A++LDGG E A   + + +      +      +DAKT LQE+        P Y V   
Sbjct: 117 IGAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT 176

Query: 181 SGPDHDPRFTVVVEISGL 198
            G  H+ +F V   +  L
Sbjct: 177 HGAAHNQQFEVECTVPKL 194


>gi|227833427|ref|YP_002835134.1| ribonuclease III [Corynebacterium aurimucosum ATCC 700975]
 gi|262184417|ref|ZP_06043838.1| ribonuclease III [Corynebacterium aurimucosum ATCC 700975]
 gi|227454443|gb|ACP33196.1| ribonuclease III [Corynebacterium aurimucosum ATCC 700975]
          Length = 256

 Score = 98.6 bits (244), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 111/221 (50%), Gaps = 8/221 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++ L K +G    N  LL  ALTH S ++   +  + ERLEFLGD +LGL I+  L+  +
Sbjct: 22  HAPLLKALGVEI-NDELLCLALTHRSFANENGHLPNNERLEFLGDAVLGLSIAAKLYEKY 80

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            S  E ++S    S+VS    S VARE+ +   + +    +        SI AD  E+++
Sbjct: 81  PSRPESDISKMRASIVSRYGLSDVAREIGVGEHVLLGKGEQSTGGRDKDSILADTTEAIL 140

Query: 124 AALYLDGGIEVAGTFVDKYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            A+Y   G EVA   V K +  +   A+ SG+   D KT LQE         P Y  T  
Sbjct: 141 GAIYRQHGFEVARGVVLKLFAAKIDNAVVSGR-HMDWKTTLQELCAELKAAMPVYSAT-S 198

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +GP+HD  F  V  ++GL   +G   +K+ AEQ AA E  +
Sbjct: 199 TGPEHDQTFNAVATVAGLTVGRGTGHNKKLAEQQAAEEACQ 239


>gi|217420723|ref|ZP_03452228.1| ribonuclease III [Burkholderia pseudomallei 576]
 gi|237813195|ref|YP_002897646.1| ribonuclease III [Burkholderia pseudomallei MSHR346]
 gi|217396135|gb|EEC36152.1| ribonuclease III [Burkholderia pseudomallei 576]
 gi|237506043|gb|ACQ98361.1| ribonuclease III [Burkholderia pseudomallei MSHR346]
          Length = 467

 Score = 98.6 bits (244), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 68/198 (34%), Positives = 101/198 (51%), Gaps = 7/198 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++ E   RLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSQLESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
               EG+LS VR N LV  ++  ++A+ L+++  +R+     +       SI AD  E++
Sbjct: 58  GKLDEGDLSRVRAN-LVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAI 116

Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           I A++LDGG E A   + + +      +      +DAKT LQE+        P Y V   
Sbjct: 117 IGAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT 176

Query: 181 SGPDHDPRFTVVVEISGL 198
            G  H+ +F V   +  L
Sbjct: 177 HGAAHNQQFEVECTVPKL 194


>gi|167903627|ref|ZP_02490832.1| ribonuclease III [Burkholderia pseudomallei NCTC 13177]
          Length = 467

 Score = 98.6 bits (244), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 68/198 (34%), Positives = 101/198 (51%), Gaps = 7/198 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++ E   RLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSQLESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
               EG+LS VR N LV  ++  ++A+ L+++  +R+     +       SI AD  E++
Sbjct: 58  GKLDEGDLSRVRAN-LVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAI 116

Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           I A++LDGG E A   + + +      +      +DAKT LQE+        P Y V   
Sbjct: 117 IGAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT 176

Query: 181 SGPDHDPRFTVVVEISGL 198
            G  H+ +F V   +  L
Sbjct: 177 HGAAHNQQFEVECTVPKL 194


>gi|313901966|ref|ZP_07835382.1| ribonuclease III [Thermaerobacter subterraneus DSM 13965]
 gi|313467755|gb|EFR63253.1| ribonuclease III [Thermaerobacter subterraneus DSM 13965]
          Length = 284

 Score = 98.6 bits (244), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 74/212 (34%), Positives = 111/212 (52%), Gaps = 9/212 (4%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFDSAKE 68
            G A A      +ALTH+S    + ++     ERLEFLGD +L L ++  +F  +    E
Sbjct: 50  TGVAPARPEPFLEALTHASYRSEHPDTAGPDNERLEFLGDAVLNLCVTDYIFRTYPQRPE 109

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELS    ++V AET +  A+ L L   +R+             S+ AD  E+++AA+YL
Sbjct: 110 GELSKLRAAVVRAETLAATAQRLGLGELLRLGRGEEATGGRQRPSVLADAYEAMVAAVYL 169

Query: 129 DGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVT-PEYKVTFRSGPD 184
             G+E A  F+ +      +R  +S     D KT LQE +  + G+  P Y+V   +GP+
Sbjct: 170 QEGLEGARAFILRTLGDDIRRLAESSGACDDPKTALQELSR-RLGLGEPTYRVVGAAGPE 228

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           HDPR+TV V + G   AQ +  SK+ AE+ AA
Sbjct: 229 HDPRYTVEVRVGGRPLAQAVGRSKKVAEREAA 260


>gi|149926460|ref|ZP_01914721.1| ribonuclease III [Limnobacter sp. MED105]
 gi|149824823|gb|EDM84037.1| ribonuclease III [Limnobacter sp. MED105]
          Length = 226

 Score = 98.6 bits (244), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 72/211 (34%), Positives = 102/211 (48%), Gaps = 6/211 (2%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           + Y+F +++LL  ALTH S S  + E   RLEFLGD +L    S LLF       EG++S
Sbjct: 1   MAYSFKDQALLRLALTHRSYSSHHNE---RLEFLGDSVLNCAASILLFETHPDMDEGKMS 57

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
              + LV  +  + V R L L  ++ + +   +   +   SI AD +E+L  A+ LD G 
Sbjct: 58  RVRSHLVKQDCLAMVGRNLLLDQYLFLGAGELRSAKTIKDSIVADALEALFGAILLDSGF 117

Query: 133 EVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           E A   V +  K   L++      +D KT LQE    K    P Y+V    G    P F+
Sbjct: 118 EAARDCVVRLLKPVMLETPIESMGKDPKTRLQELLQGKRMKLPMYRVLVEGGTSASPEFS 177

Query: 191 VVVEISGLAPAQ-GMDCSKRAAEQVAAAEVL 220
           V   +  L   + G   S+R AEQ AA  VL
Sbjct: 178 VECAVEDLEITKVGQGHSRRVAEQHAAQAVL 208


>gi|62258114|gb|AAX77768.1| unknown protein [synthetic construct]
          Length = 265

 Score = 98.6 bits (244), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 118/230 (51%), Gaps = 18/230 (7%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           YS     +GY F + +LL +ALTH S +   +++YERLEFLGD +L  +I+ +L+  F  
Sbjct: 31  YSRFYNILGYNFKDYTLLIRALTHRSKT---KKNYERLEFLGDSVLSFVIAEVLYKQFID 87

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS   + LV   T +Q+A  L +  +I + +   +        I  DV E++I A
Sbjct: 88  LAEGKLSQLRSKLVKGATLAQLASSLKMDEYIILGA--SEQGGHKREKILEDVFEAVIGA 145

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR----RDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +YLD         + K W Q  + S        +D+K++LQE         PEY +    
Sbjct: 146 IYLDSDFATVKKVILK-WYQPIISSINLDTIKVKDSKSKLQEILLQNALSLPEYSIETID 204

Query: 182 GPDHDPRFTVVV---EISGLAPAQGMDCSKRAAEQVAAA---EVLKREGI 225
           G DH+ +FTVV    +++    AQG   S++ AEQ  A    E+L ++G+
Sbjct: 205 GKDHEQQFTVVAVSKDLNLRVKAQG--TSRKKAEQKTAEKMIEMLSQQGL 252


>gi|288553095|ref|YP_003425030.1| ribonuclease III [Bacillus pseudofirmus OF4]
 gi|288544255|gb|ADC48138.1| ribonuclease III [Bacillus pseudofirmus OF4]
          Length = 263

 Score = 98.6 bits (244), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 71/216 (32%), Positives = 108/216 (50%), Gaps = 9/216 (4%)

Query: 12  RIGYAFANRSLLEKALTHSSIS-----HSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           +I   F NR LL +A THSS       +S+Q++ ERLEFLGD +L L +S  L+  F+S 
Sbjct: 41  KIDLTFENRKLLIQAFTHSSYVNEHRIYSFQDN-ERLEFLGDAVLELAVSQFLYKKFNSM 99

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGE++    S+V   + ++ A EL+    + +             ++ ADV ES I AL
Sbjct: 100 SEGEMTKLRASIVCEPSLARFAEELEFGELVLLGKGEEMTGGRNRPALLADVFESFIGAL 159

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD G+E    F+ +    + +  G F    D K++LQE+         +Y +    GP 
Sbjct: 160 YLDQGLEAVYKFLSQTMYPK-INDGAFSHMMDFKSQLQEFIQRDNLGQIQYVIVQEIGPA 218

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           H+  F   V+++      G   SK+ AEQ AA + L
Sbjct: 219 HNREFVSEVQLNESKLGVGSGRSKKEAEQHAAQQAL 254


>gi|253999489|ref|YP_003051552.1| ribonuclease III [Methylovorus sp. SIP3-4]
 gi|313201514|ref|YP_004040172.1| ribonuclease III [Methylovorus sp. MP688]
 gi|253986168|gb|ACT51025.1| ribonuclease III [Methylovorus sp. SIP3-4]
 gi|312440830|gb|ADQ84936.1| ribonuclease III [Methylovorus sp. MP688]
          Length = 224

 Score = 98.2 bits (243), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 67/194 (34%), Positives = 97/194 (50%), Gaps = 5/194 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + LE+ +G+ F N  LL +ALTH S  HS + + ERLEFLGD +L  +I+  LF  F   
Sbjct: 4   TGLERLLGHDFTNGQLLTQALTHRS--HSARNN-ERLEFLGDGVLNCIIANQLFQRFSKL 60

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+LS     LV   T  ++A+ L L   +++     K       S+ AD +E++I A+
Sbjct: 61  PEGDLSRLRAHLVKEPTLCEIAQRLQLGDMLKLGEGELKSGGWRRPSVLADALEAIIGAV 120

Query: 127 YLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           +LD G   A   V + +     A+      +DAK+ LQE+   +    PEY VT   G  
Sbjct: 121 FLDAGFIAAEALVVRLYTPLLEAIDPKSIGKDAKSLLQEYLQGRKIALPEYTVTATEGEA 180

Query: 185 HDPRFTVVVEISGL 198
           H   F V   I  L
Sbjct: 181 HCQLFKVDCTIPKL 194


>gi|134301463|ref|YP_001121431.1| ribonuclease III [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|189043317|sp|A4IWK9|RNC_FRATW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|134049240|gb|ABO46311.1| ribonuclease III [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 230

 Score = 98.2 bits (243), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 118/230 (51%), Gaps = 18/230 (7%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           YS     +GY F + +LL +ALTH S +   +++YERLEFLGD +L  +I+ +L+  F  
Sbjct: 5   YSRFYNILGYNFKDCTLLIRALTHRSKT---KKNYERLEFLGDSVLSFVIAEVLYKQFTD 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS   + LV   T +Q+A  L +  +I + +   +        I  DV E++I A
Sbjct: 62  LAEGKLSQLRSKLVKGTTLAQLASSLKMDEYIILGAS--EQGGHKREKILEDVFEAVIGA 119

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR----RDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +YLD         + K W Q  + S        +D+K++LQE         PEY +    
Sbjct: 120 IYLDSDFATVKKVILK-WYQPIISSINLDTIKVKDSKSKLQEILLQNALSLPEYSIETID 178

Query: 182 GPDHDPRFTVVV---EISGLAPAQGMDCSKRAAEQVAA---AEVLKREGI 225
           G DH+ +FTVV    +++    AQG   S++ AEQ  A    E+L ++G+
Sbjct: 179 GKDHEQQFTVVAVSKDLNLRVKAQG--TSRKKAEQKTAEKMIEMLSQQGL 226


>gi|104774253|ref|YP_619233.1| ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|103423334|emb|CAI98181.1| Ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
          Length = 231

 Score = 98.2 bits (243), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 110/222 (49%), Gaps = 15/222 (6%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           L+++ G  F +  LLE+A THSS  +        +YE+LEFLGD +L   +S  L+ HF 
Sbjct: 10  LDEKYGIRFKDVRLLEEAFTHSSYVNENPGKTFGNYEKLEFLGDAVLEFTVSDYLYRHFQ 69

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGEL+   +++V  E  S+VA +      I +     K       ++  DV E+   
Sbjct: 70  HLNEGELTRLRSNIVRTEGFSKVALDCGFKEEINLGVGEEKAGGRKRKALLEDVFEAFNG 129

Query: 125 ALYLDGGIEVAGTFVDKYWKQRA---LKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTF 179
           AL+LD GIE     V+K+  Q     + +G F   RD KT+LQE       VT EY+V  
Sbjct: 130 ALFLDQGIEA----VEKFLSQTVYPLIAAGYFTPSRDFKTDLQELLQQNGSVTIEYRVLN 185

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            S     P F V V + G   A G   +K+ AEQ AA+  L+
Sbjct: 186 ES--QQPPHFEVEVLVDGKKLASGEGRNKKKAEQDAASHALE 225


>gi|325126041|gb|ADY85371.1| Ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 231

 Score = 98.2 bits (243), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 110/222 (49%), Gaps = 15/222 (6%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           L+++ G  F +  LLE+A THSS  +        +YE+LEFLGD +L   +S  L+ HF 
Sbjct: 10  LDEKYGIRFKDVRLLEEAFTHSSYVNENPGKTLGNYEKLEFLGDAVLEFTVSDYLYRHFQ 69

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGEL+   +++V  E  S+VA +      I +     K       ++  DV E+   
Sbjct: 70  HLNEGELTRLRSNIVRTEGFSKVALDCGFKEEINLGVGEEKAGGRKRKALLEDVFEAFNG 129

Query: 125 ALYLDGGIEVAGTFVDKYWKQRA---LKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTF 179
           AL+LD GIE     V+K+  Q     + +G F   RD KT+LQE       VT EY+V  
Sbjct: 130 ALFLDQGIEA----VEKFLSQTVYPLIAAGYFTPSRDFKTDLQELLQQNGSVTIEYRVLN 185

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            S     P F V V + G   A G   +K+ AEQ AA+  L+
Sbjct: 186 ES--QQPPHFEVEVLVDGKKLASGEGRNKKKAEQDAASHALE 225


>gi|56708583|ref|YP_170479.1| ribonuclease III [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110671054|ref|YP_667611.1| ribonuclease III [Francisella tularensis subsp. tularensis FSC198]
 gi|224457765|ref|ZP_03666238.1| ribonuclease III [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254371212|ref|ZP_04987214.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875445|ref|ZP_05248155.1| ribonuclease III [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|81597132|sp|Q5NER3|RNC_FRATT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|123359364|sp|Q14G66|RNC_FRAT1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|54112881|gb|AAV29074.1| NT02FT1862 [synthetic construct]
 gi|56605075|emb|CAG46188.1| Ribonuclease III [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110321387|emb|CAL09571.1| Ribonuclease III [Francisella tularensis subsp. tularensis FSC198]
 gi|151569452|gb|EDN35106.1| hypothetical protein FTBG_00981 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254841444|gb|EET19880.1| ribonuclease III [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282159811|gb|ADA79202.1| Ribonuclease III [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 230

 Score = 98.2 bits (243), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 118/230 (51%), Gaps = 18/230 (7%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           YS     +GY F + +LL +ALTH S +   +++YERLEFLGD +L  +I+ +L+  F  
Sbjct: 5   YSRFYNILGYNFKDYTLLIRALTHRSKT---KKNYERLEFLGDSVLSFVIAEVLYKQFID 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS   + LV   T +Q+A  L +  +I + +   +        I  DV E++I A
Sbjct: 62  LAEGKLSQLRSKLVKGATLAQLASSLKMDEYIILGAS--EQGGHKREKILEDVFEAVIGA 119

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR----RDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +YLD         + K W Q  + S        +D+K++LQE         PEY +    
Sbjct: 120 IYLDSDFATVKKVILK-WYQPIISSINLDTIKVKDSKSKLQEILLQNALSLPEYSIETID 178

Query: 182 GPDHDPRFTVVV---EISGLAPAQGMDCSKRAAEQVAA---AEVLKREGI 225
           G DH+ +FTVV    +++    AQG   S++ AEQ  A    E+L ++G+
Sbjct: 179 GKDHEQQFTVVAVSKDLNLRVKAQG--TSRKKAEQKTAEKMIEMLSQQGL 226


>gi|325529480|gb|EGD06389.1| ribonuclease III [Burkholderia sp. TJI49]
          Length = 279

 Score = 98.2 bits (243), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 66/193 (34%), Positives = 99/193 (51%), Gaps = 7/193 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +E R+ Y F N  LL +ALTH S S ++ E   RLEFLGD +L   ++ LLF  F    E
Sbjct: 1   MESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRFSKLDE 57

Query: 69  GELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           G+LS VR N LV  ++  ++A+ L+++  +R+     +       SI AD  E++I A++
Sbjct: 58  GDLSRVRAN-LVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADAFEAIIGAVF 116

Query: 128 LDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           LDGG E A   + + +      +      +DAKT LQE+        P Y V    G  H
Sbjct: 117 LDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAH 176

Query: 186 DPRFTVVVEISGL 198
           + +F V   +  L
Sbjct: 177 NQQFEVECTVPKL 189


>gi|296270740|ref|YP_003653372.1| ribonuclease III [Thermobispora bispora DSM 43833]
 gi|296093527|gb|ADG89479.1| ribonuclease III [Thermobispora bispora DSM 43833]
          Length = 267

 Score = 98.2 bits (243), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 65/192 (33%), Positives = 99/192 (51%), Gaps = 5/192 (2%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           +LE+ALTH S ++      + ERLEFLGD +LGL+++  L+ +     EG+L+    ++V
Sbjct: 30  ILEQALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRNHPDMPEGQLAKLRAAVV 89

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
           +    + VAR LDL  ++R+            +SI AD +E+LI  +Y+D G++ A   V
Sbjct: 90  NMRALADVARSLDLGKYLRLGRGEEGTGGRDKSSILADTLEALIGTVYVDKGLDEAFRVV 149

Query: 140 DKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197
            + +     +S       D KT LQE   A+    PEY V   SGPDH   F   V + G
Sbjct: 150 HQLFDPLIERSASLGAGLDWKTSLQELTAAESLGVPEYHVD-ESGPDHAKSFVATVRVGG 208

Query: 198 LAPAQGMDCSKR 209
               +G   SK+
Sbjct: 209 KEYGKGTGRSKK 220


>gi|296130133|ref|YP_003637383.1| ribonuclease III [Cellulomonas flavigena DSM 20109]
 gi|296021948|gb|ADG75184.1| ribonuclease III [Cellulomonas flavigena DSM 20109]
          Length = 240

 Score = 98.2 bits (243), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 110/222 (49%), Gaps = 9/222 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58
           MS    S LEK +G    +  LL  ALTH S +H      + ERLEFLGD +LGL+++  
Sbjct: 1   MSTAAQSLLEK-LGVHL-DPELLVLALTHRSFAHEAGGIPTNERLEFLGDTVLGLVVTEH 58

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L+       EG+L+    + VS    +QVAR LDL S++ +             SI +D 
Sbjct: 59  LYRTHPGNSEGDLAKMRAATVSQRALAQVARSLDLGSYVLLGKGELATGGRDKDSILSDT 118

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGV-TPEY 175
           +E+L  A+YL  G+E A   VD+  +     +       D KT LQE + A  G+  P Y
Sbjct: 119 LEALFGAVYLSHGLEPARVLVDRLVRPTLTAAADLGAGLDWKTSLQELS-ASLGLGAPYY 177

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           +VT   GPDH   FT    + G     G   +K+ AEQ AA+
Sbjct: 178 EVTGE-GPDHARTFTASAVVGGEVRGTGTGPAKKIAEQEAAS 218


>gi|227544367|ref|ZP_03974416.1| ribonuclease III [Lactobacillus reuteri CF48-3A]
 gi|300909772|ref|ZP_07127233.1| ribonuclease III [Lactobacillus reuteri SD2112]
 gi|227185630|gb|EEI65701.1| ribonuclease III [Lactobacillus reuteri CF48-3A]
 gi|300893637|gb|EFK86996.1| ribonuclease III [Lactobacillus reuteri SD2112]
          Length = 233

 Score = 98.2 bits (243), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 104/218 (47%), Gaps = 7/218 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFD 64
           L K     F N +LL +A T +S  + +       YER+EFLGD +L L++S  ++  F 
Sbjct: 9   LAKEFNIHFDNPALLAEAFTQASYVNEHPNQGLKYYERIEFLGDAVLELIVSEYIYKRFP 68

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              +G+L+    ++V  ++ S+ A+E     +IR+              +  D+ ES I 
Sbjct: 69  ELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGHGEEMAGARERPGLLCDIFESFIG 128

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182
           ALYLD G      FV +    + L  G F    DAKT LQE+      +  EY +   SG
Sbjct: 129 ALYLDQGRPAVEKFVQRVIFPK-LDMGWFDHAVDAKTSLQEFLQRDGDIAIEYHLVEESG 187

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            ++DP F V V  +G    +G   SK+ AE  AA + L
Sbjct: 188 TENDPEFKVNVTANGDVIGEGKGSSKKHAEMQAAQQAL 225


>gi|148544383|ref|YP_001271753.1| ribonuclease III [Lactobacillus reuteri DSM 20016]
 gi|184153747|ref|YP_001842088.1| ribonuclease III [Lactobacillus reuteri JCM 1112]
 gi|194466493|ref|ZP_03072480.1| Ribonuclease III [Lactobacillus reuteri 100-23]
 gi|227363192|ref|ZP_03847326.1| ribonuclease III [Lactobacillus reuteri MM2-3]
 gi|325682703|ref|ZP_08162219.1| ribonuclease III [Lactobacillus reuteri MM4-1A]
 gi|189043324|sp|A5VKP2|RNC_LACRD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|229564353|sp|B2G826|RNC_LACRJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|148531417|gb|ABQ83416.1| RNAse III [Lactobacillus reuteri DSM 20016]
 gi|183225091|dbj|BAG25608.1| ribonuclease III [Lactobacillus reuteri JCM 1112]
 gi|194453529|gb|EDX42426.1| Ribonuclease III [Lactobacillus reuteri 100-23]
 gi|227071798|gb|EEI10087.1| ribonuclease III [Lactobacillus reuteri MM2-3]
 gi|324977053|gb|EGC14004.1| ribonuclease III [Lactobacillus reuteri MM4-1A]
          Length = 233

 Score = 97.8 bits (242), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 104/218 (47%), Gaps = 7/218 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFD 64
           L K     F N +LL +A T +S  + +       YER+EFLGD +L L++S  ++  F 
Sbjct: 9   LAKEFNIHFDNPALLAEAFTQASYVNEHPNQGLKYYERIEFLGDAVLELIVSEYIYKRFP 68

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              +G+L+    ++V  ++ S+ A+E     +IR+              +  D+ ES I 
Sbjct: 69  ELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGHGEEMAGARERPGLLCDIFESFIG 128

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182
           ALYLD G      FV +    + L  G F    DAKT LQE+      +  EY +   SG
Sbjct: 129 ALYLDQGRPAVEKFVQRVIFPK-LDMGWFDHAVDAKTSLQEFLQRDGDIAIEYHLVEESG 187

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            ++DP F V V  +G    +G   SK+ AE  AA + L
Sbjct: 188 TENDPEFKVNVTANGDVIGEGKGSSKKHAEMQAAQQAL 225


>gi|116514343|ref|YP_813249.1| ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|116093658|gb|ABJ58811.1| RNAse III [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 231

 Score = 97.8 bits (242), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 110/222 (49%), Gaps = 15/222 (6%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           L+++ G  F +  LLE+A THSS  +        +YE+LEFLGD +L   +S  L+ HF 
Sbjct: 10  LDEKYGIRFKDVRLLEEAFTHSSYLNENPGKTLGNYEKLEFLGDAVLEFTVSDYLYRHFQ 69

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGEL+   +++V  E  S+VA +      I +     K       ++  DV E+   
Sbjct: 70  HLNEGELTRLRSNIVRTEGFSKVALDCGFKEEINLGVGEEKAGGRKRKALLEDVFEAFNG 129

Query: 125 ALYLDGGIEVAGTFVDKYWKQRA---LKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTF 179
           AL+LD GIE     V+K+  Q     + +G F   RD KT+LQE       VT EY+V  
Sbjct: 130 ALFLDQGIEA----VEKFLSQTVYPLIAAGYFTPSRDFKTDLQELLQQNGSVTIEYRVLN 185

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            S     P F V V + G   A G   +K+ AEQ AA+  L+
Sbjct: 186 ES--QQPPHFEVEVLVDGKKLASGEGRNKKKAEQDAASHALE 225


>gi|167563529|ref|ZP_02356445.1| ribonuclease III [Burkholderia oklahomensis EO147]
          Length = 293

 Score = 97.8 bits (242), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 66/193 (34%), Positives = 99/193 (51%), Gaps = 7/193 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +E R+ Y F N  LL +ALTH S S ++ E   RLEFLGD +L   ++ LLF  F    E
Sbjct: 1   MESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRFSKLDE 57

Query: 69  GELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           G+LS VR N LV  ++  ++A+ L+++  +R+     +       SI AD  E++I A++
Sbjct: 58  GDLSRVRAN-LVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVF 116

Query: 128 LDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           LDGG E A   + + +      +      +DAKT LQE+        P Y V    G  H
Sbjct: 117 LDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAH 176

Query: 186 DPRFTVVVEISGL 198
           + +F V   +  L
Sbjct: 177 NQQFEVECTVPKL 189


>gi|254524282|ref|ZP_05136337.1| ribonuclease III [Stenotrophomonas sp. SKA14]
 gi|219721873|gb|EED40398.1| ribonuclease III [Stenotrophomonas sp. SKA14]
          Length = 226

 Score = 97.8 bits (242), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 75/214 (35%), Positives = 113/214 (52%), Gaps = 7/214 (3%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           IG+ F + +LL++ALTH S    + E   RLEFLGD I+ ++ +  L+  +  A EG ++
Sbjct: 12  IGHPFRDAALLKQALTHRSAGAPHNE---RLEFLGDSIVNMMAAEALYRRWPKADEGAMT 68

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                LV     + + R L+L   + +     K       SI AD VE+++AA+YLD G 
Sbjct: 69  RARAELVREGALAVIGRSLELGERLTLGPGEMKSGGHRRDSILADAVEAVVAAIYLDAGF 128

Query: 133 EVAGTFVDKYWKQ--RALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
           E     V  ++     AL  SG+  +D KT LQEW  A+    P+Y++   SG DH   F
Sbjct: 129 EACRAVVLPWFSASIEALPASGRPEKDPKTRLQEWLQARQKALPQYELVSESGDDHAKHF 188

Query: 190 TVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKR 222
            V   ++  A + +G   S+R AEQ AAA VL++
Sbjct: 189 RVRCNVADPAASTEGEGASRRLAEQQAAAAVLEQ 222


>gi|300811711|ref|ZP_07092185.1| ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300497287|gb|EFK32335.1| ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 231

 Score = 97.8 bits (242), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 110/222 (49%), Gaps = 15/222 (6%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           L+++ G  F +  LLE+A THSS  +        +YE+LEFLGD +L   +S  L+ HF 
Sbjct: 10  LDEKYGIRFKDVRLLEEAFTHSSYVNENPGKTLGNYEKLEFLGDAVLEFTVSDYLYRHFQ 69

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGEL+   +++V  E  S+VA +      I +     K       ++  DV E+   
Sbjct: 70  HLNEGELTRLRSNIVRTEGFSKVALDCGFKEEINLGVGEEKAGGRKRKALLEDVFEAFNG 129

Query: 125 ALYLDGGIEVAGTFVDKYWKQRA---LKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTF 179
           AL+LD GIE     V+K+  Q     + +G F   RD KT+LQE       VT EY+V  
Sbjct: 130 ALFLDQGIEA----VEKFSSQTVYPLIAAGYFTPSRDFKTDLQELLQQNGSVTIEYRVLN 185

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            S     P F V V + G   A G   +K+ AEQ AA+  L+
Sbjct: 186 ES--QQPPHFEVEVLVDGKKLASGEGRNKKKAEQDAASHALE 225


>gi|256851300|ref|ZP_05556689.1| ribonuclease III [Lactobacillus jensenii 27-2-CHN]
 gi|260660724|ref|ZP_05861639.1| ribonuclease III [Lactobacillus jensenii 115-3-CHN]
 gi|282933255|ref|ZP_06338642.1| ribonuclease III [Lactobacillus jensenii 208-1]
 gi|297206169|ref|ZP_06923564.1| ribonuclease III [Lactobacillus jensenii JV-V16]
 gi|256616362|gb|EEU21550.1| ribonuclease III [Lactobacillus jensenii 27-2-CHN]
 gi|260548446|gb|EEX24421.1| ribonuclease III [Lactobacillus jensenii 115-3-CHN]
 gi|281302759|gb|EFA94974.1| ribonuclease III [Lactobacillus jensenii 208-1]
 gi|297149295|gb|EFH29593.1| ribonuclease III [Lactobacillus jensenii JV-V16]
          Length = 230

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/210 (34%), Positives = 109/210 (51%), Gaps = 11/210 (5%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           G  F N +LLE+A THSS  + + +    +YE+LEFLGD +L L +S  L+ HF S  EG
Sbjct: 15  GIKFKNETLLEEAFTHSSYVNEHPKESAGNYEKLEFLGDAVLELAVSDYLYRHFPSLNEG 74

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           +L+   +++V  E  S  A E    + I +     K       ++  DV E+   AL+LD
Sbjct: 75  QLTRLRSNIVRTEGFSGFAIECGFPAEINLGRGEEKTGARERKTLLEDVFEAFNGALFLD 134

Query: 130 GGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG-PDHD 186
            G++    F+ K      + SG+F   RD KT+LQE       +  EY+V   +  P + 
Sbjct: 135 QGMDAVQKFL-KLTVYPLIDSGEFTDSRDYKTDLQELLQVNGAIKIEYQVLEETKLPSN- 192

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             F V + + G   ++G   +K+AAEQVAA
Sbjct: 193 --FKVALFVEGKKISEGSGHNKKAAEQVAA 220


>gi|269302927|gb|ACZ33027.1| ribonuclease III [Chlamydophila pneumoniae LPCoLN]
          Length = 237

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 109/225 (48%), Gaps = 11/225 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHF 63
           + +E ++ + F    LLE ALTH S  +      E  ERLEFLGD +LGL+++  LF  F
Sbjct: 8   TAIEAKLNFTFTQPKLLEIALTHPSYKNESAVQIEDSERLEFLGDAVLGLIVTEHLFLLF 67

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            S  EG LS    SLV+A+ C +    L +  ++ +    +        S  A++ ES++
Sbjct: 68  PSMDEGTLSTARASLVNAKACCRYTTTLGIGDYLLIGKGEKIQSERGRLSAYANLFESIL 127

Query: 124 AALYLDGGIEVAGTFVDKYWKQR----ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            A+YLDGG+  A          R     L SG    + K  LQ++   +F V P Y+ T 
Sbjct: 128 GAVYLDGGLSPARKLTVPLLPPREEILPLMSG----NPKNLLQQFTQKQFRVLPVYQSTA 183

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            +    +  + + V ++     +G   SK+ AE++AA + L   G
Sbjct: 184 VTDAQGNVSYQIQVLVNQEVWGEGNASSKKEAEKIAAQQALDTYG 228


>gi|167586632|ref|ZP_02379020.1| ribonuclease III [Burkholderia ubonensis Bu]
          Length = 278

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/193 (34%), Positives = 99/193 (51%), Gaps = 7/193 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +E R+ Y F N  LL +ALTH S S ++ E   RLEFLGD +L   ++ LLF  F    E
Sbjct: 1   MESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRFGKLDE 57

Query: 69  GELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           G+LS VR N LV  ++  ++A+ L+++  +R+     +       SI AD  E++I A++
Sbjct: 58  GDLSRVRAN-LVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVF 116

Query: 128 LDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           LDGG E A   + + +      +      +DAKT LQE+        P Y V    G  H
Sbjct: 117 LDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAH 176

Query: 186 DPRFTVVVEISGL 198
           + +F V   +  L
Sbjct: 177 NQQFEVECTVPKL 189


>gi|94987013|ref|YP_594946.1| ribonuclease III [Lawsonia intracellularis PHE/MN1-00]
 gi|94731262|emb|CAJ54625.1| dsRNA-specific ribonuclease [Lawsonia intracellularis PHE/MN1-00]
          Length = 233

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/215 (32%), Positives = 107/215 (49%), Gaps = 10/215 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65
           L++ +GY F +  LL  ALTHSS  +      E  ERLEFLGD +L + IS  LF     
Sbjct: 6   LQEDLGYYFKDEQLLITALTHSSWVNENDVTAEHNERLEFLGDAVLEICISEELFKRHPE 65

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A+EGEL+   ++LV+ +    +AREL L  ++ ++            ++ AD +E++  A
Sbjct: 66  AREGELTRMRSNLVNTKMLVLLARELKLNQYLLLARGEENQGGRQRNTLLADTMEAVFGA 125

Query: 126 LYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +++DG +    +V     D +W +   KS    +D KT LQE         P+Y +    
Sbjct: 126 VFVDGDLFYARKVISKSYDNFWPK---KSAALVKDFKTRLQEETQRHIKGLPKYILEGMH 182

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           GP+H+  F V VE+      +      + AEQ AA
Sbjct: 183 GPEHEKIFEVCVELPDGQVFRASGTGLKRAEQEAA 217


>gi|241668007|ref|ZP_04755585.1| ribonuclease III [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254876541|ref|ZP_05249251.1| ribonuclease III [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254842562|gb|EET20976.1| ribonuclease III [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 230

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 116/227 (51%), Gaps = 12/227 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           YS L K +GY+F N +LL +ALTH S +   +++YERLEFLGD ILG +I+ +L+  F  
Sbjct: 5   YSRLYKILGYSFKNYTLLVRALTHRSKT---KKNYERLEFLGDSILGFVIAEVLYMEFPD 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS   + LV   T + +A    L  +I + +   +        I  DV E++I A
Sbjct: 62  LAEGKLSQIRSKLVKGVTLANLALNFKLDEYIILGAS--EQGGHKREKILEDVFEAIIGA 119

Query: 126 LYLDGGIEVAGTFVDKYWKQ--RALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +YLD         +  ++K     L     + +D+K++LQE         PEY +    G
Sbjct: 120 IYLDSDFATVKKVIVNWYKPVISTLNLDDVKVKDSKSKLQEILLQNGLSLPEYSIETIDG 179

Query: 183 PDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAA---AEVLKREGI 225
            DH+  FTV    + L    +    S++ AEQ AA    ++L ++G+
Sbjct: 180 KDHEQEFTVKALSNDLNIKVRAKGTSRKKAEQKAAEKMIQILSQQGL 226


>gi|225873636|ref|YP_002755095.1| ribonuclease III [Acidobacterium capsulatum ATCC 51196]
 gi|225793249|gb|ACO33339.1| ribonuclease III [Acidobacterium capsulatum ATCC 51196]
          Length = 302

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/261 (32%), Positives = 131/261 (50%), Gaps = 47/261 (18%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISH-------------------------SYQESYERL 43
           LE  +GY F ++ LL +ALTHSS+++                         S  E  E+L
Sbjct: 20  LEAALGYTFQDKGLLARALTHSSLAYEQTAQTATPAAARATGKSSEARTRRSPLEDNEQL 79

Query: 44  EFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL 103
           EFLGD +LGL+++  L+       EG+L+   ++LVS +   QVA  L L +++R+    
Sbjct: 80  EFLGDAVLGLIVAEALYRAHPEMSEGQLTRLRSALVSRKHMGQVAHRLHLGTYLRMGRGE 139

Query: 104 RKDVCSFMTSIQADVVESLIAALYLD-----GGIEVAGT----FVDKYWKQRALKS---- 150
            +       ++ A+  E+LIAA+YLD     G  E A T     ++++  + +L S    
Sbjct: 140 ERSGGRKKPALLANAAEALIAAVYLDAAGITGPCETALTAARAIIERHVIEPSLPSLLQE 199

Query: 151 ---GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL--AP----A 201
              G    D K+ LQE+  ++    PEY VT +SGPDH  RF V V + G   AP    A
Sbjct: 200 ASRGTSIGDHKSALQEFLQSEHRGQPEYVVTGQSGPDHHKRFLVEVRLPGKAGAPGTALA 259

Query: 202 QGMDCSKRAAEQVAAAEVLKR 222
           +G+  +K+ AEQ AA   L++
Sbjct: 260 RGIGGTKKHAEQEAARRALRK 280


>gi|167627437|ref|YP_001677937.1| ribonuclease III [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|189043314|sp|B0TXH8|RNC_FRAP2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|167597438|gb|ABZ87436.1| Ribonuclease III [Francisella philomiragia subsp. philomiragia ATCC
           25017]
          Length = 230

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 116/227 (51%), Gaps = 12/227 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           YS L K +GY+F N +LL +ALTH S +   +++YERLEFLGD ILG +I+ +L+  F  
Sbjct: 5   YSRLYKILGYSFKNYTLLVRALTHRSKT---KKNYERLEFLGDSILGFVIAEVLYMEFPD 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS   + LV   T + +A    L  +I + +   +        I  DV E++I A
Sbjct: 62  LAEGKLSQIRSKLVKGVTLANLALNFKLDEYIILGAS--EQGGHKREKILEDVFEAIIGA 119

Query: 126 LYLDGGIEVAGTFVDKYWKQ--RALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +YLD         +  ++K     L     + +D+K++LQE         PEY +    G
Sbjct: 120 IYLDSDFATVKKVIVNWYKPVISTLNLDDVKVKDSKSKLQEILLQNGLSLPEYSIETIDG 179

Query: 183 PDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAA---AEVLKREGI 225
            DH+  FTV    + L    +    S++ AEQ AA    ++L ++G+
Sbjct: 180 KDHEQEFTVKALSNDLNIEVRAKGTSRKKAEQKAAEKMIQILSQQGL 226


>gi|254423554|ref|ZP_05037272.1| ribonuclease III [Synechococcus sp. PCC 7335]
 gi|196191043|gb|EDX86007.1| ribonuclease III [Synechococcus sp. PCC 7335]
          Length = 228

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 107/213 (50%), Gaps = 10/213 (4%)

Query: 17  FANRSLLEKALTHSSISH---SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           F N +L ++A+TH S ++   +  E  ERLEFLGD IL  L +  LF  F    EGEL+ 
Sbjct: 16  FTNSALWQQAMTHKSFANEQPTATEHNERLEFLGDAILTFLSAEYLFVRFPKQSEGELTP 75

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG--G 131
             ++LV      + A+ L L  ++R+     K+       +     E+LI A +LD    
Sbjct: 76  MRSALVDQSQLHRFAQGLKLDEYLRLGKGAEKEGARKSARLLCSAFEALIGAYFLDQEHN 135

Query: 132 IEVAGTFVDKYWKQRA---LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           +++   ++   ++      +++G   +D KT LQEWA    G  PEY      GPDH   
Sbjct: 136 LQLVKDYITPIFESAIAPDVEAGV--KDDKTRLQEWAQKTTGSVPEYVEISTLGPDHAKE 193

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           F + V+I G +  +G   SK+ A+++AA   L+
Sbjct: 194 FVIEVQIGGKSYGRGSGRSKQKAQKLAARSTLE 226


>gi|114775465|ref|ZP_01451033.1| ribonuclease III [Mariprofundus ferrooxydans PV-1]
 gi|114553576|gb|EAU55957.1| ribonuclease III [Mariprofundus ferrooxydans PV-1]
          Length = 229

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/212 (33%), Positives = 109/212 (51%), Gaps = 4/212 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTH-SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           L++ IGY F N +LL++ALTH S++  +     ERLEFLGD +LGL+++  L   F    
Sbjct: 11  LQQVIGYRFNNPALLKRALTHCSALRSAVSGDLERLEFLGDAVLGLVVAEYLHQSFPEEP 70

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG+LS    +LV  ++   VA +  L++ + V    R +      SI A+ VE++I A++
Sbjct: 71  EGQLSRMRANLVCRDSLLVVASDWRLSACLIVGDGERGEYGIKSPSIVANAVEAVIGAVF 130

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
            + G + +   V   W+      G+   RDAK+ LQE    K    PEY +  R G  + 
Sbjct: 131 EESGWDASRRVVLTAWRPMLDDIGRVDPRDAKSRLQELTQGKGWGLPEYVLVDR-GVGYQ 189

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           PRF     +       G    K+ AE +AAAE
Sbjct: 190 PRFEATCSVQEKVVGHGSGERKKLAE-IAAAE 220


>gi|256397117|ref|YP_003118681.1| ribonuclease III [Catenulispora acidiphila DSM 44928]
 gi|256363343|gb|ACU76840.1| ribonuclease III [Catenulispora acidiphila DSM 44928]
          Length = 276

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/203 (34%), Positives = 108/203 (53%), Gaps = 8/203 (3%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           R+G     R L+++ALTH S ++      + ERLEFLGD +LGL+++  L+       EG
Sbjct: 24  RLGLPVDAR-LIDRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYTTHSELPEG 82

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           +L+   +++V+++  ++VAR L L  ++++             SI AD +E+LI ++YLD
Sbjct: 83  QLAKLRSAVVNSKALAEVARGLRLGDYVKLGRGEETTGGRDKASILADTLEALIGSVYLD 142

Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEW-AHAKFGVTPEYKVTFRSGPDHD 186
            GIEVA   V + +      S       D KT LQE  A A  GV P+Y+VT  +GPDHD
Sbjct: 143 HGIEVAFDLVRRLFGPLIATSATLGAGLDWKTSLQELTAVAGIGV-PDYRVT-ETGPDHD 200

Query: 187 PRFTVVVEISGLAPAQGMDCSKR 209
             F     + G     G   SK+
Sbjct: 201 KFFEADACVGGTVYGHGSGRSKK 223


>gi|167470281|ref|ZP_02334985.1| ribonuclease III [Yersinia pestis FV-1]
          Length = 195

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/191 (34%), Positives = 98/191 (51%), Gaps = 5/191 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F  + LL +ALTH S S  + E   RLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFQQQELLLQALTHRSASSKHNE---RLEFLGDSILSFVIANELY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  RRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I      + +++  R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSDIHTIERLILEWYHSRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRF 189
              G  HD  F
Sbjct: 178 QVRGEAHDQEF 188


>gi|15617978|ref|NP_224262.1| ribonuclease III [Chlamydophila pneumoniae CWL029]
 gi|15835590|ref|NP_300114.1| ribonuclease III [Chlamydophila pneumoniae J138]
 gi|16752990|ref|NP_445263.1| ribonuclease III [Chlamydophila pneumoniae AR39]
 gi|7531191|sp|Q9Z9C7|RNC_CHLPN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|4376309|gb|AAD18207.1| Ribonuclease III [Chlamydophila pneumoniae CWL029]
 gi|7189635|gb|AAF38526.1| ribonuclease III [Chlamydophila pneumoniae AR39]
 gi|8978428|dbj|BAA98265.1| ribonuclease III [Chlamydophila pneumoniae J138]
          Length = 237

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 109/225 (48%), Gaps = 11/225 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHF 63
           + +E ++ + F    LLE ALTH S  +      E  ERLEFLGD +LGL+++  LF  F
Sbjct: 8   TAIEAKLNFTFTQPKLLEIALTHPSYKNESAVQIEDSERLEFLGDAVLGLIVTEHLFLLF 67

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            S  EG LS    SLV+A+ C +    L +  ++ +    +        S  A++ ES++
Sbjct: 68  PSMDEGTLSTARASLVNAKACCRYTTMLGIGDYLLIGKGEKIQSERGRLSAYANLFESIL 127

Query: 124 AALYLDGGIEVAGTFVDKYWKQR----ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            A+YLDGG+  A          R     L SG    + K  LQ++   +F V P Y+ T 
Sbjct: 128 GAVYLDGGLSPARKLTVPLLPPREEILPLMSG----NPKNLLQQFTQKQFRVLPVYQSTA 183

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            +    +  + + V ++     +G   SK+ AE++AA + L   G
Sbjct: 184 VTDAQGNVSYQIQVLVNQEVWGEGNASSKKEAEKIAAQQALDTYG 228


>gi|218247605|ref|YP_002372976.1| Ribonuclease III [Cyanothece sp. PCC 8801]
 gi|257061062|ref|YP_003138950.1| ribonuclease III [Cyanothece sp. PCC 8802]
 gi|218168083|gb|ACK66820.1| Ribonuclease III [Cyanothece sp. PCC 8801]
 gi|256591228|gb|ACV02115.1| ribonuclease III [Cyanothece sp. PCC 8802]
          Length = 236

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/204 (32%), Positives = 111/204 (54%), Gaps = 7/204 (3%)

Query: 19  NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           N   L+ ALTH +IS   +++Y++LEFLGD ++ L  + LL   + +A  GE +   + +
Sbjct: 28  NYFWLDLALTHPTISQ--EKNYQQLEFLGDSVIRLAAAELLLETYPNAPVGEFAALRSMM 85

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG-GIEVAGT 137
           VS  T +++A    L S++ VS    KD    ++ + AD  E+++ ALYL    +E+   
Sbjct: 86  VSDRTLAELADSFTLESYLLVSDSAAKDKVGRVSRL-ADAFEAVLGALYLSTHTMELIRP 144

Query: 138 FVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV-TFRSGPDHDPRFTVVVE 194
           ++D+  K +A  ++    R++ K  +QEW  A++ + PEY+V T +S P   P F   V 
Sbjct: 145 WLDELLKVKAEEIRQDPARQNYKDAVQEWTQAQYKLLPEYRVQTIKSLPTEQPYFLAEVW 204

Query: 195 ISGLAPAQGMDCSKRAAEQVAAAE 218
           +       G   SK+ AEQ AA +
Sbjct: 205 LQNRKLGSGEGRSKKMAEQAAAKD 228


>gi|224825223|ref|ZP_03698329.1| Ribonuclease III [Lutiella nitroferrum 2002]
 gi|224602894|gb|EEG09071.1| Ribonuclease III [Lutiella nitroferrum 2002]
          Length = 238

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 101/198 (51%), Gaps = 5/198 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +++  L   +GY F    LL +ALTH S       + ER EF+GD IL   ++ +LF+ F
Sbjct: 8   VKFGRLSVALGYRFTRPELLRQALTHRSFGSP---NNERFEFIGDSILNYTVARMLFDRF 64

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            S  EGELS    +LV+  + +++A  L L  ++ +     K       SI AD +E+  
Sbjct: 65  PSLSEGELSRLRANLVNQSSLAEIALGLGLGDYLYLGEGELKSGGFNRPSILADALEATF 124

Query: 124 AALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+  D     A   V + ++QR  A+   K  +DAKT LQE   A+    P+Y++  +S
Sbjct: 125 AAVSFDTDFAAAENVVRRLYEQRVAAIDPTKHAKDAKTRLQEALQARKLALPKYRILSQS 184

Query: 182 GPDHDPRFTVVVEISGLA 199
           G  H+  F V  ++  LA
Sbjct: 185 GEAHEQWFKVECDLGELA 202


>gi|189499162|ref|YP_001958632.1| Ribonuclease III [Chlorobium phaeobacteroides BS1]
 gi|189494603|gb|ACE03151.1| Ribonuclease III [Chlorobium phaeobacteroides BS1]
          Length = 271

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 106/218 (48%), Gaps = 5/218 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDS 65
           LE  +G++  +  L   ALTH SI H + E   S +RLEFLGD +L L+IS LL+  F  
Sbjct: 43  LEDILGFSPIDEKLYVIALTHRSIVHDHPEASDSNQRLEFLGDAVLDLIISELLYTVFPE 102

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           + EG+LS     +V+ ++ +  A ++ L   + +     K      TS  AD  E+LI A
Sbjct: 103 SDEGKLSSNRAKIVNRKSLAGFAGKISLGEHLLIGETADKINIQTSTSSLADAFEALIGA 162

Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           LYLD G+E    F+ ++        K      + K+ L E+  +     P Y V    G 
Sbjct: 163 LYLDKGLEETRKFIMRHVAGHVDIKKIDTVENNYKSRLIEYTQSCQIAPPVYTVVSEEGA 222

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +H+  FT+ V        +G    K+ AEQ AA E L+
Sbjct: 223 EHEKLFTIEVSCDNRPLGKGSARRKKDAEQTAAREALE 260


>gi|313906054|ref|ZP_07839406.1| ribonuclease III [Eubacterium cellulosolvens 6]
 gi|313469099|gb|EFR64449.1| ribonuclease III [Eubacterium cellulosolvens 6]
          Length = 228

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 113/220 (51%), Gaps = 7/220 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLIS 56
           M  LR   LE++ G+ F + S L+ A++HSS ++     ++   ERLEFLGD +L L+ S
Sbjct: 1   MKKLR--ELEQKTGHVFNDISWLKLAMSHSSYANEQHLGHRGCNERLEFLGDAVLELVSS 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L++ +    EG+L+    SLV   T +  AR + L  ++ +             S+ +
Sbjct: 59  EYLYDTYPEMPEGKLTRLRASLVCEPTLAYDARCIGLPEYLLLGKGEDATGGRKRDSVVS 118

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D +E+ I A++ DGG E A  F+ +Y     +++ +   D+KT LQE   +       Y+
Sbjct: 119 DALEATIGAIFKDGGFEEAKKFILRYI-MNDVENKQLFHDSKTRLQEMIQSVTDEELSYQ 177

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           +   SGPDH+  F   V +      +G   SK+AAEQ AA
Sbjct: 178 IVAESGPDHEKVFEAEVRLGDKLLGRGTGHSKKAAEQQAA 217


>gi|256847360|ref|ZP_05552806.1| ribonuclease III [Lactobacillus coleohominis 101-4-CHN]
 gi|256716024|gb|EEU30999.1| ribonuclease III [Lactobacillus coleohominis 101-4-CHN]
          Length = 233

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/212 (32%), Positives = 103/212 (48%), Gaps = 7/212 (3%)

Query: 17  FANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           F N  LL +A T +S  + + E     YER+EFLGD +L L +S  ++  +    +G+L+
Sbjct: 17  FQNPDLLAEAFTQASYVNEHPEQHLKYYERIEFLGDAVLQLFVSEYIYRRYPELLQGKLT 76

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
               ++V  ++ S+ A+E     +IR+              +  D+ ES I ALYLD G 
Sbjct: 77  RLRAAMVCEDSFSKFAKECHFDQYIRLGKGEEMAGARNRPGLLCDIFESFIGALYLDQGR 136

Query: 133 EVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           +    F+ +    + L  G F    D KT LQE+      V  EY +   +G ++ P F 
Sbjct: 137 DAVERFIHRVIFPK-LDMGWFDHAVDTKTSLQEFLQRDGDVDIEYHLLDETGSENAPEFK 195

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           V V   G   AQG   SK+ AE  AAA+ LK+
Sbjct: 196 VNVSADGQVLAQGTGSSKKHAEMDAAAQALKK 227


>gi|225075386|ref|ZP_03718585.1| hypothetical protein NEIFLAOT_00391 [Neisseria flavescens
           NRL30031/H210]
 gi|224953204|gb|EEG34413.1| hypothetical protein NEIFLAOT_00391 [Neisseria flavescens
           NRL30031/H210]
          Length = 239

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 115/225 (51%), Gaps = 18/225 (8%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           + +++KR+GY F N  LL++ALTH S +  + E   R EF+GD IL   ++ +LF+ F  
Sbjct: 11  HRSIQKRLGYEFRNMELLQQALTHRSYNAKHNE---RFEFVGDSILNYSVARMLFDAFPK 67

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    +LV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 68  LSEGELSRMRAALVNEGVLAEIALEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127

Query: 126 LYLDGGIEVAGTFVDKYWKQRA----LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +  D     A   V   + +R     L  GK  +D+KT LQE   A+    P+Y++  ++
Sbjct: 128 VSFDADFSAAEKVVRHLFAERVKRADLNIGK--KDSKTALQEALQARRFALPKYRIEEQA 185

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDC-----SKRAAEQVAAAEVLK 221
               D  F +  ++  L    G  C     S++ AEQ AA E L+
Sbjct: 186 EQTADAMFVISCDLGEL----GFICNARGSSRKVAEQKAACEALE 226


>gi|312194940|ref|YP_004015001.1| ribonuclease III [Frankia sp. EuI1c]
 gi|311226276|gb|ADP79131.1| ribonuclease III [Frankia sp. EuI1c]
          Length = 319

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/204 (35%), Positives = 106/204 (51%), Gaps = 12/204 (5%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL++ALTH S ++      + ERLEFLGD +L L+++  L+N      EG L+ +  S+V
Sbjct: 45  LLDRALTHRSYAYENGGLPTNERLEFLGDAVLQLVVTDALYNRHPDLPEGALAKQRASVV 104

Query: 80  SAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           ++   + VAR +    +  ++ +             SI AD +E+LI A+YL+ G+EVA 
Sbjct: 105 NSRALADVARVIGPKGIGPYLLLGKGEETTGGRDKASILADTLEALIGAVYLELGLEVAA 164

Query: 137 TFVDKYW----KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
             V +Y+     + A +      D KT LQE   A+ G+ P   V   SGPDH  RFT  
Sbjct: 165 QLVHRYFDPLLDEAAGRGAGL--DWKTSLQERT-AELGMGPPDYVVTDSGPDHAKRFTAR 221

Query: 193 VEISGLAPAQGMDCSKRAAEQVAA 216
             IS     +G   SK+ AEQ AA
Sbjct: 222 ARISDRIYGEGEGGSKKEAEQRAA 245


>gi|33241390|ref|NP_876331.1| ribonuclease III [Chlamydophila pneumoniae TW-183]
 gi|33235898|gb|AAP97988.1| ribonuclease III [Chlamydophila pneumoniae TW-183]
          Length = 237

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 109/225 (48%), Gaps = 11/225 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHF 63
           + +E ++ + F    LLE ALTH S  +      E  ERLEFLGD +LGL+++  LF  F
Sbjct: 8   TAIEAKLNFTFTQPKLLEIALTHPSYKNESAVQIEDSERLEFLGDAVLGLIVTEHLFLLF 67

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            S  EG LS    SLV+A+ C +    L +  ++ +    +        S  A++ ES++
Sbjct: 68  PSMDEGTLSTARASLVNAKACCRYTTVLGIGDYLLIGKGEKIQSERGRLSAYANLFESIL 127

Query: 124 AALYLDGGIEVAGTFVDKYWKQR----ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            A+YLDGG+  A          R     L SG    + K  LQ++   +F V P Y+ T 
Sbjct: 128 GAVYLDGGLSPARKLTVPLLPPREEILPLMSG----NPKNLLQQFTQKQFRVLPVYQSTA 183

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            +    +  + + V ++     +G   SK+ AE++AA + L   G
Sbjct: 184 VTDAQGNVSYQIQVLVNQEVWGEGNASSKKEAEKIAAQQALDTYG 228


>gi|38234119|ref|NP_939886.1| ribonuclease III [Corynebacterium diphtheriae NCTC 13129]
 gi|81564732|sp|Q6NGH3|RNC_CORDI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|38200381|emb|CAE50069.1| ribonuclease III [Corynebacterium diphtheriae]
          Length = 249

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/201 (33%), Positives = 103/201 (51%), Gaps = 5/201 (2%)

Query: 20  RSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
           R LL  ALTH S ++      + ERLEFLGD +LGL ++  L+  + S+ E ++S    S
Sbjct: 36  RELLVLALTHRSFANENGMLPNNERLEFLGDSVLGLSVAGQLYQQYTSSPESDISKMRAS 95

Query: 78  LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137
           +VS    + +ARE++L   I +    +        SI AD  E+L+ A+YL  G E+A  
Sbjct: 96  IVSRYGLADIAREINLGQHILLGKGEQLHDGRSKDSILADTTEALLGAIYLAHGFEIARD 155

Query: 138 FVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
            V + +K +     +    +D KT LQE    +    P Y  T  +GP+H+  FT  V +
Sbjct: 156 TVLRLFKHKIDTASATGLHQDWKTTLQERLAERNLEMPTYTSTV-TGPEHEQTFTAEVAV 214

Query: 196 SGLAPAQGMDCSKRAAEQVAA 216
            G     G+  +K+ AEQ AA
Sbjct: 215 HGTVLGTGVGTNKKLAEQAAA 235


>gi|167619235|ref|ZP_02387866.1| ribonuclease III [Burkholderia thailandensis Bt4]
          Length = 434

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/193 (34%), Positives = 99/193 (51%), Gaps = 7/193 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +E R+ Y F N  LL +ALTH S S ++ E   RLEFLGD +L   ++ LLF  F    E
Sbjct: 1   MESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRFSKLDE 57

Query: 69  GELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           G+LS VR N LV  ++  ++A+ L+++  +R+     +       SI AD  E++I A++
Sbjct: 58  GDLSRVRAN-LVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVF 116

Query: 128 LDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           LDGG E A   + + +      +      +DAKT LQE+        P Y V    G  H
Sbjct: 117 LDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAH 176

Query: 186 DPRFTVVVEISGL 198
           + +F V   +  L
Sbjct: 177 NQQFEVECTVPKL 189


>gi|15835187|ref|NP_296946.1| ribonuclease III [Chlamydia muridarum Nigg]
 gi|270285359|ref|ZP_06194753.1| ribonuclease III [Chlamydia muridarum Nigg]
 gi|270289375|ref|ZP_06195677.1| ribonuclease III [Chlamydia muridarum Weiss]
 gi|301336756|ref|ZP_07224958.1| ribonuclease III [Chlamydia muridarum MopnTet14]
 gi|13878715|sp|Q9PK97|RNC_CHLMU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|7190609|gb|AAF39406.1| ribonuclease III [Chlamydia muridarum Nigg]
          Length = 232

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 104/215 (48%), Gaps = 3/215 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65
           +E ++ + F+   LL  ALTH S  + +    E  ERLEFLGD +LGL+++  LF  F S
Sbjct: 10  VESKLKFTFSQPRLLVTALTHPSYRNEFPSDGEDSERLEFLGDAVLGLVVTEHLFLLFPS 69

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG LS   ++LV+AE C    ++L L   + +    +        S  A++ E+++ A
Sbjct: 70  LNEGLLSTTRSALVNAEACFNYTQKLSLGEHLLIGRGEKMQSHRGKISAYANLFEAILGA 129

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           +YLDGG+  A   +      +         + K  LQ++      V P Y     S  D 
Sbjct: 130 VYLDGGLAPARQIIVPLLPNKEAILPLMLVNPKNRLQQFTQQTLKVLPTYIALPWSSEDG 189

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            P + V V ++     +G   SK+ AE++AA + L
Sbjct: 190 TPGYHVQVFVNEKLWGEGFAGSKKEAEKLAAKQAL 224


>gi|255066864|ref|ZP_05318719.1| ribonuclease III [Neisseria sicca ATCC 29256]
 gi|255048939|gb|EET44403.1| ribonuclease III [Neisseria sicca ATCC 29256]
          Length = 239

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 118/222 (53%), Gaps = 12/222 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++ ++GY F + +LL++ALTH S    + ++ ER EF+GD IL   ++ +LF+ F  
Sbjct: 11  HAAIQNKLGYHFKDTALLQQALTHRSY---HAKNNERFEFVGDSILNYTVAKMLFDAFPK 67

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 68  LTEGELSRLRASLVNEGVLAEIALEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +  D     A   V   + +R +K   F+   +D KT LQE   A+    P+Y++  + G
Sbjct: 128 VSFDADFAEAEKVVRHLFAER-VKRADFKTQGKDNKTALQEALQARRLALPKYRIEEQIG 186

Query: 183 PDHDPRFTVVVEISGLA---PAQGMDCSKRAAEQVAAAEVLK 221
             +D  F +  ++  L     AQG   S++ AEQ AA E L+
Sbjct: 187 HANDSMFLISCDLGELGFICKAQG--SSRKVAEQQAAKEALQ 226


>gi|262068132|ref|ZP_06027744.1| ribonuclease III [Fusobacterium periodonticum ATCC 33693]
 gi|291378220|gb|EFE85738.1| ribonuclease III [Fusobacterium periodonticum ATCC 33693]
          Length = 234

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 102/191 (53%), Gaps = 6/191 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           LE ++ Y F NR+LL+ AL H S+ +  +E    + ERLE LGD +L L+++  L+ ++ 
Sbjct: 7   LEHKLNYYFNNRNLLKTALLHKSLGNEKKEYKNQNNERLELLGDAVLDLIVAEYLYRNYK 66

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           SA EG ++     +VS    ++++R++ L  F+ +S            SI AD  E+++ 
Sbjct: 67  SASEGTIAKLKAMIVSEPILAKISRQIGLGKFLMLSKGEILSGGRNRESILADAFEAVLG 126

Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+Y+D  +E A +F   + +Q    ++  +   D K+ LQE+    F   P Y++    G
Sbjct: 127 AVYMDSNLEDARSFALGHIEQYITHIEEDEDILDFKSILQEYVQKNFRTVPIYELISEKG 186

Query: 183 PDHDPRFTVVV 193
           PDH   F + V
Sbjct: 187 PDHMKEFEIQV 197


>gi|167720558|ref|ZP_02403794.1| ribonuclease III [Burkholderia pseudomallei DM98]
          Length = 438

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/193 (34%), Positives = 99/193 (51%), Gaps = 7/193 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +E R+ Y F N  LL +ALTH S S ++ E   RLEFLGD +L   ++ LLF  F    E
Sbjct: 1   MESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRFGKLDE 57

Query: 69  GELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           G+LS VR N LV  ++  ++A+ L+++  +R+     +       SI AD  E++I A++
Sbjct: 58  GDLSRVRAN-LVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVF 116

Query: 128 LDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           LDGG E A   + + +      +      +DAKT LQE+        P Y V    G  H
Sbjct: 117 LDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAH 176

Query: 186 DPRFTVVVEISGL 198
           + +F V   +  L
Sbjct: 177 NQQFEVECTVPKL 189


>gi|257453602|ref|ZP_05618892.1| ribonuclease III [Enhydrobacter aerosaccus SK60]
 gi|257449060|gb|EEV24013.1| ribonuclease III [Enhydrobacter aerosaccus SK60]
          Length = 275

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/230 (34%), Positives = 112/230 (48%), Gaps = 24/230 (10%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71
           ++GY F N +L   AL H S    +  +YERLEFLGD +LG++I+  LF  +    EG L
Sbjct: 42  QMGYQFDNVNLPIMALMHRSFDSEH--NYERLEFLGDALLGVIIAEALFLRYPDYNEGRL 99

Query: 72  SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG- 130
           S    SLV  ET   +A++L+L+ ++ +    RK       SI AD VE+LI A+YLD  
Sbjct: 100 SRLRASLVREETLVIIAKQLNLSDYLILGVGERKGGGRQRASILADSVEALIGAIYLDSQ 159

Query: 131 -----GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
                   V   F D + K   +K  K  +DAK+ LQE   A     P Y+VT   G   
Sbjct: 160 NFDTVKACVLAWFEDLFEK---VKEQKVLKDAKSRLQELLQAHQLALPRYEVTETIGNAP 216

Query: 186 DPRFTVVVEI---------SGLAPAQGMDC----SKRAAEQVAAAEVLKR 222
           +  F V  ++           +AP Q +      S+R AEQ  A  +L +
Sbjct: 217 NQIFVVSCQVEIIFDNKTAKPIAPTQALVTAQGESRRIAEQRCAEAMLAK 266


>gi|167570687|ref|ZP_02363561.1| ribonuclease III [Burkholderia oklahomensis C6786]
          Length = 454

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/193 (34%), Positives = 99/193 (51%), Gaps = 7/193 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +E R+ Y F N  LL +ALTH S S ++ E   RLEFLGD +L   ++ LLF  F    E
Sbjct: 1   MESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRFSKLDE 57

Query: 69  GELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           G+LS VR N LV  ++  ++A+ L+++  +R+     +       SI AD  E++I A++
Sbjct: 58  GDLSRVRAN-LVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVF 116

Query: 128 LDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           LDGG E A   + + +      +      +DAKT LQE+        P Y V    G  H
Sbjct: 117 LDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAH 176

Query: 186 DPRFTVVVEISGL 198
           + +F V   +  L
Sbjct: 177 NQQFEVECTVPKL 189


>gi|288576266|ref|ZP_05978490.2| ribonuclease III [Neisseria mucosa ATCC 25996]
 gi|288565937|gb|EFC87497.1| ribonuclease III [Neisseria mucosa ATCC 25996]
          Length = 271

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 118/222 (53%), Gaps = 12/222 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++ ++GY F + +LL++ALTH S    + ++ ER EF+GD IL   ++ +LF+ F  
Sbjct: 43  HTAIQNKLGYHFKDTALLQQALTHRSY---HAKNNERFEFVGDSILNYTVAKMLFDAFPK 99

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 100 LTEGELSRLRASLVNEGVLAEIALEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 159

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +  D     A   V   + +R +K   F+   +D KT LQE   A+    P+Y++  + G
Sbjct: 160 VSFDADFAEAEKVVRHLFAER-VKRADFKTQGKDNKTALQEALQARRLALPKYRIEEQIG 218

Query: 183 PDHDPRFTVVVEISGLA---PAQGMDCSKRAAEQVAAAEVLK 221
             +D  F +  ++  L     AQG   S++ AEQ AA E L+
Sbjct: 219 HANDSMFLISCDLGELGFICKAQG--SSRKVAEQQAAKEALQ 258


>gi|320108696|ref|YP_004184286.1| ribonuclease III [Terriglobus saanensis SP1PR4]
 gi|319927217|gb|ADV84292.1| ribonuclease III [Terriglobus saanensis SP1PR4]
          Length = 252

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 122/241 (50%), Gaps = 26/241 (10%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSIS---HSYQESYERLEFLGDRILGLLIST 57
           M+    + L +R+GY F +  LL+ ALTHSS++    +  ES ER+EF+GD ++GL+++ 
Sbjct: 1   MAKAAKTGLAERLGYKFRDAKLLDLALTHSSLAFEAGTASESNERMEFVGDAVVGLIVAE 60

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF  F S  EGEL+     LVS +   +V   L L  ++++     +       ++ A+
Sbjct: 61  SLFQRFPSLGEGELTRMRALLVSRKHLGEVGARLGLGEYLQLGRGEEQSGGRKKPALMAN 120

Query: 118 VVESLIAALYLDGGIEVAGTFVDK---YWKQRALKS--------GKFRRDAKTELQEWAH 166
            +E+++AA+YLDGG+      V++     K   L+         G    D K+ LQE   
Sbjct: 121 AMEAVLAAVYLDGGLSAVQEIVEREVVLPKMPELERAAGEQTHFGGVVGDYKSALQELLQ 180

Query: 167 AKFGV---TPEYKVTFRSGPDHDPRFTV-VVEISGLAPAQ-------GMDCSKRAAEQVA 215
           A+ GV      Y     SGPDH   F V ++ + G A ++       G   +K+AA+Q A
Sbjct: 181 AR-GVGSAVARYVTAEESGPDHRKHFRVELMLVEGDAASKKETLLAVGEGPTKKAAQQKA 239

Query: 216 A 216
           A
Sbjct: 240 A 240


>gi|332298046|ref|YP_004439968.1| Ribonuclease 3 [Treponema brennaborense DSM 12168]
 gi|332181149|gb|AEE16837.1| Ribonuclease 3 [Treponema brennaborense DSM 12168]
          Length = 256

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 117/227 (51%), Gaps = 14/227 (6%)

Query: 1   MSALRYSTL---EKRIGYAFANRSLLEKALTHSSISH---SYQESYERLEFLGDRILGLL 54
           +SA R + L   E+ I   F +  LL+ A  H S S+   + + + ERLEFLGD +LG+ 
Sbjct: 21  LSAARRNQLLDFERAISVHFNDLQLLDLAFHHRSYSNEGANTRYNNERLEFLGDAVLGMA 80

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
            +T L+       EG+L+   + +VS  T + +A E+ + S + +             +I
Sbjct: 81  TATYLYESMLERPEGDLARIKSVVVSEMTLAPIALEIGVDSCLVLGKGEELSGGRTKKAI 140

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGV 171
            AD VE++I A YLD G   A   V +      Q+ L++ K  RD KT LQE+   K+  
Sbjct: 141 LADAVEAVIGAYYLDSGYSAAEKLVLELIVPEIQKVLQN-KHHRDYKTLLQEFYQKKYKE 199

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGL--APAQGMDCSKRAAEQVAA 216
            P Y++  R+GPDHD  F V V +  +   PA G +  K+ AEQ AA
Sbjct: 200 CPVYELVKRTGPDHDRTFWVSVHLHSVTYGPASGKN--KKEAEQSAA 244


>gi|219848618|ref|YP_002463051.1| Ribonuclease III [Chloroflexus aggregans DSM 9485]
 gi|254807244|sp|B8GAM6|RNC_CHLAD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|219542877|gb|ACL24615.1| Ribonuclease III [Chloroflexus aggregans DSM 9485]
          Length = 229

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 97/199 (48%), Gaps = 6/199 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISH------SYQESYERLEFLGDRILGLLISTL 58
           R + LE+ +G  F +R LL+ AL H S+ +      S     ERLEFLGD +L  + +T 
Sbjct: 4   RLAELERALGITFRDRKLLQTALMHRSLFNEQPHLLSNLSDNERLEFLGDSVLHFVTTTW 63

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF  F    E  L+    +LVS +  ++ A  L+L  +  +S           + + AD+
Sbjct: 64  LFQQFPHQNESTLTSWRAALVSTKGLAECAATLNLGQYAFLSRGEDTPKGRQRSKLLADL 123

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
            E++I A+YLD G+E A  F++ +  +R         D  T LQE   ++    P+Y + 
Sbjct: 124 FEAVIGAIYLDQGLEAARAFIEPFLHERIGTLQTAVLDPTTRLQEIVQSRHKQLPKYYLI 183

Query: 179 FRSGPDHDPRFTVVVEISG 197
              GPDH   + + V + G
Sbjct: 184 DERGPDHQREYVMAVTVEG 202


>gi|319639176|ref|ZP_07993927.1| ribonuclease 3 [Neisseria mucosa C102]
 gi|317399360|gb|EFV80030.1| ribonuclease 3 [Neisseria mucosa C102]
          Length = 239

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 114/225 (50%), Gaps = 18/225 (8%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           +  ++KR+GY F N  LL++ALTH S +  + E   R EF+GD IL   ++ +LF+ F  
Sbjct: 11  HRAIQKRLGYEFRNMELLQQALTHRSYNAKHNE---RFEFVGDSILNYSVARMLFDAFPK 67

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    +LV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 68  LSEGELSRMRAALVNEGVLAEIALEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127

Query: 126 LYLDGGIEVAGTFVDKYWKQRA----LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +  D     A   V   + +R     L  GK  +D+KT LQE   A+    P+Y++  ++
Sbjct: 128 VSFDADFSAAEKVVRHLFAERVKRADLNIGK--KDSKTALQEALQARRFALPKYRIEEQA 185

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDC-----SKRAAEQVAAAEVLK 221
               D  F +  ++  L    G  C     S++ AEQ AA E L+
Sbjct: 186 EQTADAMFVISCDLGEL----GFICNARGSSRKVAEQKAACEALE 226


>gi|296328081|ref|ZP_06870615.1| ribonuclease III [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|296154857|gb|EFG95640.1| ribonuclease III [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 234

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 106/194 (54%), Gaps = 12/194 (6%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           LE ++ Y F +R+LL+ AL H S+ +  +E    + ERLE LGD +L L+++  L+ ++ 
Sbjct: 7   LEHKLNYYFNDRNLLKNALLHKSLGNERKEYKNQNNERLELLGDAVLDLIVAEYLYKNYK 66

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS---FMTSIQADVVES 121
           +A EG ++     +VS    ++++R++ +  F+ +S   R +V S      SI AD  E+
Sbjct: 67  NASEGTIAKLKAMIVSEPILAKISRQIGVGKFLMLS---RGEVMSGGRNRESILADSFEA 123

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           ++ A+Y+D  ++ A  F   + KQ    ++  +   D K+ LQE+   +F   P Y++  
Sbjct: 124 ILGAVYIDSNLDEARVFALSHIKQYIDHIEENEDILDFKSILQEYVQKEFKTVPTYELVA 183

Query: 180 RSGPDHDPRFTVVV 193
             GPDH   F + V
Sbjct: 184 ERGPDHMKEFEIQV 197


>gi|241758554|ref|ZP_04756671.1| ribonuclease III [Neisseria flavescens SK114]
 gi|241321297|gb|EER57457.1| ribonuclease III [Neisseria flavescens SK114]
          Length = 239

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 114/225 (50%), Gaps = 18/225 (8%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           +  ++KR+GY F N  LL++ALTH S +  + E   R EF+GD IL   ++ +LF+ F  
Sbjct: 11  HRAIQKRLGYEFRNMELLQQALTHRSYNAKHNE---RFEFVGDSILNYSVARMLFDAFPK 67

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    +LV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 68  LSEGELSRMRAALVNEGVLAEIALEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127

Query: 126 LYLDGGIEVAGTFVDKYWKQRA----LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +  D     A   V   + +R     L  GK  +D+KT LQE   A+    P+Y++  ++
Sbjct: 128 VSFDADFSAAEKVVRHLFAERVKRADLNIGK--KDSKTALQEALQARRFALPKYRIEEQA 185

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDC-----SKRAAEQVAAAEVLK 221
               D  F +  ++  L    G  C     S++ AEQ AA E L+
Sbjct: 186 EQTADAMFVISCDLGEL----GFICNARGSSRKVAEQKAACEALE 226


>gi|298346956|ref|YP_003719643.1| ribonuclease III [Mobiluncus curtisii ATCC 43063]
 gi|298237017|gb|ADI68149.1| ribonuclease III [Mobiluncus curtisii ATCC 43063]
          Length = 249

 Score = 96.3 bits (238), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/196 (34%), Positives = 102/196 (52%), Gaps = 10/196 (5%)

Query: 22  LLEKALTHSSISHSYQES-----YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           LL  A+TH S +H + ++      ERLEFLGD +L ++++  LF +F    EGEL+    
Sbjct: 36  LLVVAMTHRSFAHEHGKTGSTGTNERLEFLGDAVLQIVVTEYLFRNFPDVPEGELAPMRA 95

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           + VS    ++VAR L L  +I +     +       SI +D +E+LI A YL  G+E   
Sbjct: 96  ATVSQTPLAEVARRLHLGDYILLGIGEDRQGGREKDSILSDTLEALIGASYLTSGLESTR 155

Query: 137 TFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
             ++++ + R L++   R    D KT L E+A A     PEY V   SGPDH   FT  +
Sbjct: 156 VTIERHLR-RYLRNAPRRAVGMDWKTHLSEFAAANSLGEPEYVVQG-SGPDHARVFTAQI 213

Query: 194 EISGLAPAQGMDCSKR 209
            I+G    +G   SK+
Sbjct: 214 RIAGEVLGEGQGTSKK 229


>gi|167581151|ref|ZP_02374025.1| ribonuclease III [Burkholderia thailandensis TXDOH]
          Length = 464

 Score = 96.3 bits (238), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/193 (34%), Positives = 99/193 (51%), Gaps = 7/193 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +E R+ Y F N  LL +ALTH S S ++ E   RLEFLGD +L   ++ LLF  F    E
Sbjct: 1   MESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRFSKLDE 57

Query: 69  GELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           G+LS VR N LV  ++  ++A+ L+++  +R+     +       SI AD  E++I A++
Sbjct: 58  GDLSRVRAN-LVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVF 116

Query: 128 LDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           LDGG E A   + + +      +      +DAKT LQE+        P Y V    G  H
Sbjct: 117 LDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAH 176

Query: 186 DPRFTVVVEISGL 198
           + +F V   +  L
Sbjct: 177 NQQFEVECTVPKL 189


>gi|228477722|ref|ZP_04062351.1| ribonuclease III [Streptococcus salivarius SK126]
 gi|228250611|gb|EEK09822.1| ribonuclease III [Streptococcus salivarius SK126]
          Length = 229

 Score = 96.3 bits (238), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 7/205 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
           LE+  G  F+ + LLE A TH+S ++ ++       ERLEFLGD  L L+IS  L+  + 
Sbjct: 8   LEQDFGIVFSQKDLLETAFTHTSYANEHRLLNISHNERLEFLGDAALQLVISVYLYKRYP 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EGE+S   +++V  E+ +   +      +IR+     K       +I  D+ E+ + 
Sbjct: 68  NKPEGEMSKMRSTIVREESLAGFTKACGFEQYIRLGKGEEKSGGRERATILGDLWEAFLG 127

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182
           ALYLD G+     F+++    +  K G F R  D KT LQE       V   Y V   SG
Sbjct: 128 ALYLDQGLPAVEKFLNQVMIPQVEK-GNFDRVTDYKTALQERLQVNGTVDITYTVIDESG 186

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCS 207
           P H   FT+ V + G   + G+  S
Sbjct: 187 PAHAKEFTMQVAVDGKELSTGLGKS 211


>gi|313768337|ref|YP_004062017.1| hypothetical protein MpV1_134 [Micromonas sp. RCC1109 virus MpV1]
 gi|312599033|gb|ADQ91057.1| hypothetical protein MpV1_134 [Micromonas sp. RCC1109 virus MpV1]
          Length = 235

 Score = 96.3 bits (238), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 106/213 (49%), Gaps = 10/213 (4%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           E+ +G    N  L +KA TH S    Y+   ES+E LEF+GD +LG +I+  LF+ F+S 
Sbjct: 11  EQLVGTKIKNLDLYQKAFTHKSALKEYEQFTESFETLEFIGDSVLGFVITKFLFDRFESR 70

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +EG L+     LV  ET +++A  L L   + +     ++  +    I  DV E+LI A+
Sbjct: 71  QEGFLTKARTKLVRGETLARIANALGLNELVIMDEKGMRNGWNNNPKILEDVFEALIGAI 130

Query: 127 YLDGGIEVAGTFVDKYWKQRA---LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           Y+D G+  A  F+ + ++      L S     + K  L           PEY+V      
Sbjct: 131 YMDIGLIHAKEFILRIYQDPKLVDLNSIMVDDNYKDHLMRHCQVNNWQLPEYRV----AA 186

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            H+  F + + I+ L  ++G+  SK+ AEQ AA
Sbjct: 187 HHEGLFYIDIYINNLFCSRGVAKSKKQAEQNAA 219


>gi|304389333|ref|ZP_07371298.1| ribonuclease III [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|315655502|ref|ZP_07908401.1| ribonuclease III [Mobiluncus curtisii ATCC 51333]
 gi|315656591|ref|ZP_07909478.1| ribonuclease III [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|304327451|gb|EFL94684.1| ribonuclease III [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|315490157|gb|EFU79783.1| ribonuclease III [Mobiluncus curtisii ATCC 51333]
 gi|315492546|gb|EFU82150.1| ribonuclease III [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 249

 Score = 96.3 bits (238), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/196 (34%), Positives = 102/196 (52%), Gaps = 10/196 (5%)

Query: 22  LLEKALTHSSISHSYQES-----YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           LL  A+TH S +H + ++      ERLEFLGD +L ++++  LF +F    EGEL+    
Sbjct: 36  LLVVAMTHRSFAHEHGKTGSTGTNERLEFLGDAVLQIVVTEYLFRNFPDVPEGELAPMRA 95

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           + VS    ++VAR L L  +I +     +       SI +D +E+LI A YL  G+E   
Sbjct: 96  ATVSQTPLAEVARRLHLGDYILLGIGEDRQGGREKDSILSDTLEALIGASYLTSGLESTR 155

Query: 137 TFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
             ++++ + R L++   R    D KT L E+A A     PEY V   SGPDH   FT  +
Sbjct: 156 VTIERHLR-RYLRNAPRRAVGMDWKTHLSEFAAANSLGEPEYVVQG-SGPDHARVFTAQI 213

Query: 194 EISGLAPAQGMDCSKR 209
            I+G    +G   SK+
Sbjct: 214 RIAGEVLGEGQGTSKK 229


>gi|237743502|ref|ZP_04573983.1| ribonuclease III [Fusobacterium sp. 7_1]
 gi|260496871|ref|ZP_05815991.1| ribonuclease III [Fusobacterium sp. 3_1_33]
 gi|229433281|gb|EEO43493.1| ribonuclease III [Fusobacterium sp. 7_1]
 gi|260196613|gb|EEW94140.1| ribonuclease III [Fusobacterium sp. 3_1_33]
          Length = 234

 Score = 96.3 bits (238), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 105/194 (54%), Gaps = 12/194 (6%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           LE ++ Y F +R+LL+ AL H S+ +  +E    + ERLE LGD +L L+++  L+  + 
Sbjct: 7   LEHKLNYYFNDRNLLKNALLHKSLGNERKEYKNQNNERLELLGDAVLDLIVAEYLYKSYK 66

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS---FMTSIQADVVES 121
           +A EG ++     +VS    ++++R++ +  F+ +S   R +V S      SI AD  E+
Sbjct: 67  NASEGTIAKLKAMIVSEPILAKISRQIGVGKFLMLS---RGEVMSGGRNRESILADSFEA 123

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           ++ A+Y+D  ++ A  F   + KQ    ++  +   D K+ LQE+   +F   P YK+  
Sbjct: 124 ILGAVYIDSNLDDARNFTLSHIKQYIDHIEENEDILDFKSILQEYVQKEFRTVPTYKLIA 183

Query: 180 RSGPDHDPRFTVVV 193
             GPDH   F + V
Sbjct: 184 ERGPDHMKEFEIQV 197


>gi|257138458|ref|ZP_05586720.1| ribonuclease III [Burkholderia thailandensis E264]
          Length = 464

 Score = 96.3 bits (238), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/193 (34%), Positives = 99/193 (51%), Gaps = 7/193 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +E R+ Y F N  LL +ALTH S S ++ E   RLEFLGD +L   ++ LLF  F    E
Sbjct: 1   MESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRFSKLDE 57

Query: 69  GELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           G+LS VR N LV  ++  ++A+ L+++  +R+     +       SI AD  E++I A++
Sbjct: 58  GDLSRVRAN-LVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVF 116

Query: 128 LDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           LDGG E A   + + +      +      +DAKT LQE+        P Y V    G  H
Sbjct: 117 LDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAH 176

Query: 186 DPRFTVVVEISGL 198
           + +F V   +  L
Sbjct: 177 NQQFEVECTVPKL 189


>gi|226199978|ref|ZP_03795528.1| ribonuclease III [Burkholderia pseudomallei Pakistan 9]
 gi|225928034|gb|EEH24071.1| ribonuclease III [Burkholderia pseudomallei Pakistan 9]
          Length = 462

 Score = 96.3 bits (238), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/193 (34%), Positives = 99/193 (51%), Gaps = 7/193 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +E R+ Y F N  LL +ALTH S S ++ E   RLEFLGD +L   ++ LLF  F    E
Sbjct: 1   MESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRFGKLDE 57

Query: 69  GELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           G+LS VR N LV  ++  ++A+ L+++  +R+     +       SI AD  E++I A++
Sbjct: 58  GDLSRVRAN-LVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVF 116

Query: 128 LDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           LDGG E A   + + +      +      +DAKT LQE+        P Y V    G  H
Sbjct: 117 LDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAH 176

Query: 186 DPRFTVVVEISGL 198
           + +F V   +  L
Sbjct: 177 NQQFEVECTVPKL 189


>gi|284799722|ref|ZP_05984688.2| ribonuclease III [Neisseria subflava NJ9703]
 gi|284797336|gb|EFC52683.1| ribonuclease III [Neisseria subflava NJ9703]
          Length = 296

 Score = 96.3 bits (238), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 114/225 (50%), Gaps = 18/225 (8%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           +  ++KR+GY F N  LL++ALTH S +  + E   R EF+GD IL   ++ +LF+ F  
Sbjct: 11  HRAIQKRLGYEFRNMELLQQALTHRSYNAKHNE---RFEFVGDSILNYSVARMLFDAFPK 67

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    +LV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 68  LSEGELSRMRAALVNEGVLAEIALEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127

Query: 126 LYLDGGIEVAGTFVDKYWKQRA----LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +  D     A   V   + +R     L  GK  +D+KT LQE   A+    P+Y++  ++
Sbjct: 128 VSFDADFSAAEKVVRHLFAERVKRADLNIGK--KDSKTALQEALQARRFALPKYRIEEQA 185

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDC-----SKRAAEQVAAAEVLK 221
               D  F +  ++  L    G  C     S++ AEQ AA E L+
Sbjct: 186 EQTADAMFVISCDLGEL----GFICNARGSSRKVAEQKAACEALE 226


>gi|304440214|ref|ZP_07400104.1| ribonuclease III [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371263|gb|EFM24879.1| ribonuclease III [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 226

 Score = 96.3 bits (238), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 114/231 (49%), Gaps = 18/231 (7%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M  L+Y      I Y F N  L   ALTHSS S+  +E    S ERLEFLGD +L L++ 
Sbjct: 1   MKNLKYLN----ISYEFKNEELFRTALTHSSYSNENKEKCKYSNERLEFLGDAVLDLVVG 56

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
              F  F   +EG+LS+    +V   + +++A++++L   I +     K+      SI A
Sbjct: 57  EYFFKQF-KVREGQLSMMRAKVVKESSLAKIAKKINLGEMILLGKGEEKNNGREKLSILA 115

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQE---WAHAKFGV 171
           D +E+LI A+YLD   +VA  F+     +   K+    +  D K+ LQE    AH    +
Sbjct: 116 DSLEALIGAIYLDSSFDVAKEFILDIMSEELEKAHESSYLVDYKSRLQEVCQMAH----L 171

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             EY +   +GP +   F   V + G    +G   S + +EQ+AA + L +
Sbjct: 172 NIEYVLEKTNGPLNSRVFYSKVIVDGKVFGRGEGNSIKKSEQMAAKDALSK 222


>gi|327441090|dbj|BAK17455.1| dsRNA-specific ribonuclease [Solibacillus silvestris StLB046]
          Length = 253

 Score = 96.3 bits (238), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 104/218 (47%), Gaps = 7/218 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY----ERLEFLGDRILGLLISTLLF 60
           ++  LE  +   F N+ LL +A THSS  + ++       ERLEFLGD +L L +S  LF
Sbjct: 22  QFEILENEMNIHFQNKDLLYQAFTHSSYVNEHRRKLFTDNERLEFLGDAVLELSVSKYLF 81

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EGEL+    S+V   +    A EL+   F+ +             ++ ADV E
Sbjct: 82  EKFPHMSEGELTKLRASIVCEPSLVVFANELNFGQFVLLGKGEELTGGRERPALLADVFE 141

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178
           S + ALYLD G+EV   F+++    + ++ G F    D K++LQE           Y++ 
Sbjct: 142 SFVGALYLDQGLEVVVAFLERVVFPK-VEVGAFSHVMDFKSQLQEIIQQTNNGLLNYEIV 200

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
              GP H+  F   V ++      G   SK+ AEQ AA
Sbjct: 201 DEKGPAHNRTFVSRVLLNSQELGIGRGKSKKEAEQQAA 238


>gi|297584006|ref|YP_003699786.1| ribonuclease III [Bacillus selenitireducens MLS10]
 gi|297142463|gb|ADH99220.1| ribonuclease III [Bacillus selenitireducens MLS10]
          Length = 261

 Score = 96.3 bits (238), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 113/226 (50%), Gaps = 7/226 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           +Y    K +   + + ++  +A THSS  + ++    +  ERLEFLGD +L L IS  LF
Sbjct: 28  KYKQFLKTLHVPYQDDNVFIQAFTHSSYVNEHRIRPHDDNERLEFLGDAVLELAISQYLF 87

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F+   EGE++    ++V   + +++A  L+   ++ +             ++ ADV E
Sbjct: 88  KLFEQMSEGEMTKLRAAIVCEPSLAKLADSLEFGDYVLLGKGEEMTGGRKRPALLADVFE 147

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178
           + I ALY+D G+E    F+++Y   + +  G F    D K++LQE+   +     +Y++ 
Sbjct: 148 AFIGALYVDLGMEAVYDFLERYVYPK-IHDGSFSHMMDFKSQLQEFIQRENQGQVQYRIV 206

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              GP H   F   V +       G+  SK+ AEQ+AA E LK+ G
Sbjct: 207 EEKGPAHAREFVSEVMLDDDQLGTGVGKSKKEAEQMAAQEALKKLG 252


>gi|312863862|ref|ZP_07724100.1| ribonuclease III [Streptococcus vestibularis F0396]
 gi|322516541|ref|ZP_08069457.1| ribonuclease III [Streptococcus vestibularis ATCC 49124]
 gi|311101398|gb|EFQ59603.1| ribonuclease III [Streptococcus vestibularis F0396]
 gi|322124929|gb|EFX96349.1| ribonuclease III [Streptococcus vestibularis ATCC 49124]
          Length = 229

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 7/205 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
           LE+  G  F  + LLE A TH+S ++ ++       ERLEFLGD  L L+IS  L+  + 
Sbjct: 8   LEQDFGIVFNQKDLLETAFTHTSYANEHRLLNISHNERLEFLGDAALQLVISVYLYKRYP 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EGE+S   +++V  E+ +  ++      +IR+     K       +I  D+ E+ + 
Sbjct: 68  NKPEGEMSKMRSTIVREESLAGFSKACGFEQYIRLGKGEEKSGGRERATILGDLWEAFLG 127

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182
           ALYLD G+     F+++    +  K G F R  D KT LQE       V   Y V   SG
Sbjct: 128 ALYLDQGLPAVEKFLNQVMIPQVEK-GNFDRVTDYKTALQERLQVNGTVDITYTVIDESG 186

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCS 207
           P H   FT+ V + G   + G+  S
Sbjct: 187 PAHAKEFTMQVAVDGKELSTGLGKS 211


>gi|256846347|ref|ZP_05551804.1| ribonuclease III [Fusobacterium sp. 3_1_36A2]
 gi|256718116|gb|EEU31672.1| ribonuclease III [Fusobacterium sp. 3_1_36A2]
          Length = 234

 Score = 95.9 bits (237), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 106/194 (54%), Gaps = 12/194 (6%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           LE ++ Y F +R+LL+ AL H S+ +  +E    + ERLE LGD +L L+++  L+ ++ 
Sbjct: 7   LEHKLNYYFNDRNLLKNALLHKSLGNERKEYKNQNNERLELLGDAVLDLIVAEYLYKNYK 66

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS---FMTSIQADVVES 121
           +A EG ++     +VS    ++++R++ +  F+ +S   R +V S      SI AD  E+
Sbjct: 67  NASEGTIAKLKAMIVSEPILAKISRQIGVGKFLMLS---RGEVMSGGRNRESILADSFEA 123

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           ++ A+Y+D  ++ A  F   + KQ    ++  +   D K+ LQE+   +F   P Y++  
Sbjct: 124 ILGAVYMDSNLDDARNFTLSHIKQYIDHIEENEDILDFKSILQEYVQKEFRTVPTYELIA 183

Query: 180 RSGPDHDPRFTVVV 193
             GPDH   F + V
Sbjct: 184 ERGPDHMKEFEIQV 197


>gi|113475790|ref|YP_721851.1| RNAse III [Trichodesmium erythraeum IMS101]
 gi|110166838|gb|ABG51378.1| RNAse III [Trichodesmium erythraeum IMS101]
          Length = 233

 Score = 95.9 bits (237), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 111/225 (49%), Gaps = 16/225 (7%)

Query: 17  FANRSLLEKALTHSS-ISHSY--QESYERLEFLGDRILGLLISTLLFNHFD---SAKEGE 70
           F N+ LL++ALTH S ++ +Y  +E  E LEF+GD +LG L+  LL+  +    + K  E
Sbjct: 8   FKNQKLLQQALTHRSYLNENYGDEEDNESLEFIGDALLGFLVGELLYRRYKEEHNLKPKE 67

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           L+   + LV  +  ++ A +L + + +R+     KD      ++ +D  E++I A +LD 
Sbjct: 68  LTRIRSLLVDEKQLAKFAVQLGIGAKMRLGKGAEKDGGRKNPALLSDTFEAIIGAYFLDS 127

Query: 131 GIEVAGTFVDKYWKQRALK----------SGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            +     F+ + ++  A              K   D K + Q+WA AKFG  P Y+    
Sbjct: 128 NLTKVKPFIKRLFEPVADNIILPNYGDNSQPKDLVDTKGKFQQWALAKFGENPRYESNNG 187

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            G DH   FT  V + G     G    K+ AE+ AA + LK+ G+
Sbjct: 188 EGLDHAKIFTAEVRVRGKLYGVGKGNRKQEAEKSAAEKALKKVGL 232


>gi|34764313|ref|ZP_00145147.1| Ribonuclease III [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|237741211|ref|ZP_04571692.1| ribonuclease III [Fusobacterium sp. 4_1_13]
 gi|27885913|gb|EAA23255.1| Ribonuclease III [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|229430743|gb|EEO40955.1| ribonuclease III [Fusobacterium sp. 4_1_13]
          Length = 234

 Score = 95.9 bits (237), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 106/194 (54%), Gaps = 12/194 (6%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           LE ++ Y F +R+LL+ AL H S+ +  +E    + ERLE LGD +L L+++  L+ ++ 
Sbjct: 7   LEHKLNYYFNDRNLLKNALLHKSLGNERKEYKNQNNERLELLGDAVLDLIVAEYLYKNYK 66

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS---FMTSIQADVVES 121
           +A EG ++     +VS    ++++R++ +  F+ +S   R +V S      SI AD  E+
Sbjct: 67  NASEGTIAKLKAMIVSEPILAKISRQIGVGKFLMLS---RGEVMSGGRNRESILADSFEA 123

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           ++ A+Y+D  ++ A  F   + KQ    ++  +   D K+ LQE+   +F   P Y++  
Sbjct: 124 ILGAVYMDSNLDDARNFTLSHIKQYIDHIEENEDILDFKSILQEYVQKEFRTVPTYELIA 183

Query: 180 RSGPDHDPRFTVVV 193
             GPDH   F + V
Sbjct: 184 ERGPDHMKEFEIQV 197


>gi|224542836|ref|ZP_03683375.1| hypothetical protein CATMIT_02028 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524248|gb|EEF93353.1| hypothetical protein CATMIT_02028 [Catenibacterium mitsuokai DSM
           15897]
          Length = 230

 Score = 95.9 bits (237), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 107/217 (49%), Gaps = 12/217 (5%)

Query: 11  KRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           KRIG       L ++A THSS    S+++   YERLEF+GD +L L +S  +F      K
Sbjct: 15  KRIG-------LYKEAFTHSSYANESNAHIPDYERLEFMGDAVLQLFVSEFIFALHPEYK 67

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG+L+   + LV  E+ ++ + EL L   + +     K       S+ A++ ES I ALY
Sbjct: 68  EGQLTQLRSKLVREESLARFSEELHLGELLYLGVGEEKSGGRHRESVLANIYESFIGALY 127

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           LD G E     ++K   +   +  +F    D KT+LQE   +    T  Y V   +GP +
Sbjct: 128 LDCGKEQVIRILEKTIFKHVNEVNEFDDITDYKTKLQELVQSDDRKTVSYHVKSSTGPAN 187

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            P F + V +  +    G   SK+ AEQ AA + L +
Sbjct: 188 APEFVIEVILDDMILGTGKGTSKKRAEQHAAKDALMK 224


>gi|229918600|ref|YP_002887246.1| ribonuclease III [Exiguobacterium sp. AT1b]
 gi|229470029|gb|ACQ71801.1| ribonuclease III [Exiguobacterium sp. AT1b]
          Length = 259

 Score = 95.9 bits (237), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 109/221 (49%), Gaps = 8/221 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNH 62
           + +LE+R+   F+N  LL +A THSS        ++  ERLEFLGD +L L +S  L+  
Sbjct: 31  FKSLEERLDVQFSNHDLLMQAFTHSSYVNEQRGLRKDNERLEFLGDAVLELTVSRFLYET 90

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +    EGEL+    ++V   +    A     + FI +             ++ ADV ES 
Sbjct: 91  YPERSEGELTKLRAAIVCEPSLVNFAEAFAFSDFILLGKGEELTGGRKRPALLADVFESY 150

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTP-EYKVTF 179
           I ALYLD GIE    F+ +    + L +G F  + D K++LQE    + G+ P  Y++  
Sbjct: 151 IGALYLDQGIEAVERFLAEAVFPKVL-AGVFEEQTDFKSQLQESVQRE-GLGPVSYEIIE 208

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             GP H   F     +S     +G+  SK+ AEQ+AA E L
Sbjct: 209 ERGPAHSREFVAHARLSDDIVGEGVGRSKKEAEQLAAKEAL 249


>gi|327284145|ref|XP_003226799.1| PREDICTED: ribonuclease 3-like [Anolis carolinensis]
          Length = 1323

 Score = 95.9 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 74/228 (32%), Positives = 113/228 (49%), Gaps = 12/228 (5%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E  IG  F +  LL +A T  ++  +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1055 KLTMFEDAIGVTFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1114

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  F  +++D  K   +  T   AD++ES 
Sbjct: 1115 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFA-ITNDKTKRPVALRTKTLADLLESF 1173

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174
            IAALY+D  +E   TF++  +  R LK     +   D K++LQ+         K    P 
Sbjct: 1174 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1232

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YK     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1233 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMCAAMDALEK 1280



 Score = 55.5 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/108 (34%), Positives = 61/108 (56%), Gaps = 9/108 (8%)

Query: 30   SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAR 89
            S I+H+     ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A+
Sbjct: 924  SRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAK 978

Query: 90   ELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135
            +L+L  F+  +     D+C  S +    A+  E+LI A+YL+G +E A
Sbjct: 979  KLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1024


>gi|251781986|ref|YP_002996288.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|242390615|dbj|BAH81074.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
          Length = 230

 Score = 95.9 bits (237), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 108/210 (51%), Gaps = 7/210 (3%)

Query: 17  FANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           F + +LLE A TH+S ++ ++       ERLEFLGD +L L+IS  LF  +    EG++S
Sbjct: 16  FEDHTLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIISEYLFAKYPKKTEGDMS 75

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
              + +V  E+ +  +R     ++I++     K       +I  D+ E+ + AL LD G+
Sbjct: 76  KLRSMIVREESLAGFSRFCSFDTYIKLGKGEEKSGGRNRDTILGDLFEAFLGALLLDKGV 135

Query: 133 EVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           +    F+ +    +  K G F   +D KT LQE   +K  +  +Y+V    GP H  +F 
Sbjct: 136 DEVRRFLQQVMIPQVEK-GNFEKVKDYKTCLQELLQSKGDIAIDYQVISEKGPAHAKQFE 194

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           V V ++    ++G+  SK+ AEQ AA   L
Sbjct: 195 VAVFVNEEVLSKGLGKSKKMAEQDAAKNAL 224


>gi|256027058|ref|ZP_05440892.1| ribonuclease III [Fusobacterium sp. D11]
 gi|289765042|ref|ZP_06524420.1| ribonuclease III [Fusobacterium sp. D11]
 gi|289716597|gb|EFD80609.1| ribonuclease III [Fusobacterium sp. D11]
          Length = 234

 Score = 95.9 bits (237), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 105/194 (54%), Gaps = 12/194 (6%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           LE ++ Y F +R+LL+ AL H S+ +  +E    + ERLE LGD +L L+++  L+  + 
Sbjct: 7   LEHKLNYYFNDRNLLKNALLHKSLGNERKEYKNQNNERLELLGDAVLDLIVAEYLYKSYK 66

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS---FMTSIQADVVES 121
           +A EG ++     +VS    ++++R++ +  F+ +S   R +V S      SI AD  E+
Sbjct: 67  NASEGTIAKLKAMIVSEPILAKISRQIGVGKFLMLS---RGEVMSGGRNRESILADSFEA 123

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           ++ A+Y+D  ++ A  F   + KQ    ++  +   D K+ LQE+   +F   P YK+  
Sbjct: 124 ILGAVYIDSNLDDARNFTLSHIKQYIDHIEEDEDILDFKSILQEYVQKEFRTVPTYKLIA 183

Query: 180 RSGPDHDPRFTVVV 193
             GPDH   F + V
Sbjct: 184 ERGPDHMKEFEIQV 197


>gi|170079136|ref|YP_001735774.1| ribonuclease III [Synechococcus sp. PCC 7002]
 gi|169886805|gb|ACB00519.1| ribonuclease III [Synechococcus sp. PCC 7002]
          Length = 258

 Score = 95.9 bits (237), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 65/194 (33%), Positives = 97/194 (50%), Gaps = 15/194 (7%)

Query: 16  AFANRSLLEKALTHSSISHSYQESY---ERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            F    LL +ALTH S ++   E+    ERLEFLGD +L  ++  LL+  +   +EGELS
Sbjct: 6   PFQRSPLLLQALTHRSFANEQPETIQDNERLEFLGDAVLKFIMGKLLYERYPDFQEGELS 65

Query: 73  -VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131
            +R +   +    ++ A+ L L   +R+     K+       I ++  E+++ A +LD G
Sbjct: 66  RLRASLENNRHQLAEFAQVLGLDQILRLGKGAEKEGARQNPEILSNTFEAVVGAYFLDAG 125

Query: 132 IEVAGTFV--------DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           IE A  FV        D+  +Q    S    ++ K +LQEWA A  G  P+YK    SG 
Sbjct: 126 IEAAIAFVETLVIPVADRLVQQ---PSDPLAQNFKGQLQEWALANHGEIPKYKTLNESGA 182

Query: 184 DHDPRFTVVVEISG 197
           DH   FTV V + G
Sbjct: 183 DHAKTFTVAVYLQG 196


>gi|209525933|ref|ZP_03274467.1| Ribonuclease III [Arthrospira maxima CS-328]
 gi|209493610|gb|EDZ93931.1| Ribonuclease III [Arthrospira maxima CS-328]
          Length = 395

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 104/211 (49%), Gaps = 21/211 (9%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYER----LEFLGDRILGLLISTLLFNH 62
           S L K+I   F N  LL  ALTHSS  + + +  +R    LEFLGD +L  +    L+N 
Sbjct: 167 SKLLKKI--PFQNVDLLNHALTHSSYLYEHPKEVKRDNELLEFLGDSVLNFISGEYLYNK 224

Query: 63  FDSAK-EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           + S + EG+L+   ++LV  +  ++ A +L L  +IR+         +   S+ ++  E+
Sbjct: 225 YKSVRNEGDLTKLRSALVENKQLAKFAEKLALQQYIRLGKG-----AALNPSLLSNTFEA 279

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALK--------SGKFRRDAKTELQEWAHAKFG-VT 172
           +I A +LD G++    F+   +     +        SGK   D+K  LQEW     G +T
Sbjct: 280 MIGAYFLDSGMKKVQEFLQPLFDSVIAEITSLSQGNSGKVAADSKNRLQEWVQKNIGPIT 339

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203
           PEY+     G DH  +FTV V + G    +G
Sbjct: 340 PEYETIKEEGADHKKQFTVQVMVQGKVYGEG 370


>gi|121533802|ref|ZP_01665629.1| Ribonuclease III [Thermosinus carboxydivorans Nor1]
 gi|121307793|gb|EAX48708.1| Ribonuclease III [Thermosinus carboxydivorans Nor1]
          Length = 243

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 76/220 (34%), Positives = 109/220 (49%), Gaps = 6/220 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65
           L   +G +F +  LL +AL H+S ++  +   E  ERLEFLGD +L L+IS  L+ +F  
Sbjct: 16  LAASLGISFNDLGLLHQALVHTSYANEVKGGVEHNERLEFLGDAVLELIISEYLYRNFPE 75

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGEL+     LV   + +Q A  L L  ++ +            TSI AD  E++I A
Sbjct: 76  LPEGELTKARARLVCEPSLAQCASRLGLGKYLLLGKGEAVSGGRERTSILADAFEAVIGA 135

Query: 126 LYLDGGIEVAGTFVDKYWKQR-AL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +YLDGG+  A  FV  +  +  AL  +      D KT LQE           Y+V    G
Sbjct: 136 IYLDGGVSAATNFVLNHLHEDLALIWRGDYVFYDYKTVLQEVVQQAGECKISYEVVAEYG 195

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           PDH+  F V V ++      G   +K+ AEQ AA E L++
Sbjct: 196 PDHNKTFEVSVLVNHQHLGAGSGKNKKEAEQNAAKEALQK 235


>gi|330836489|ref|YP_004411130.1| RNAse III [Spirochaeta coccoides DSM 17374]
 gi|329748392|gb|AEC01748.1| RNAse III [Spirochaeta coccoides DSM 17374]
          Length = 256

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 109/215 (50%), Gaps = 9/215 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            +K  G  F +  LL  A TH S    S    ++ ERLEFLGD +LG ++S  LF +  +
Sbjct: 28  FQKNAGIKFHSLELLNLAFTHRSFFNESRHEVDNNERLEFLGDSVLGFMVSEWLFLNLPA 87

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+ S   + +V+ ++ +++A  L +  F+ +      +      +I AD +E++ AA
Sbjct: 88  RHEGDFSKIRSYVVNEDSLAEIALSLHVDRFLIIGKGEEMNGGRTKKTILADCMEAIFAA 147

Query: 126 LYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            YLD G++     + ++       +   + ++D KT LQE    ++   P Y++   SGP
Sbjct: 148 YYLDAGLKPVQELILRHLVPAIMVVLDDRHKKDYKTLLQEIIQKRYHKYPVYELLRTSGP 207

Query: 184 DHDPRFTVVVEISG--LAPAQGMDCSKRAAEQVAA 216
           +HD  F V V + G    PA G   +K+ AEQ AA
Sbjct: 208 EHDRTFWVQVNVVGNIFGPASG--ANKKEAEQNAA 240


>gi|322411350|gb|EFY02258.1| ribonuclease III [Streptococcus dysgalactiae subsp. dysgalactiae
           ATCC 27957]
          Length = 230

 Score = 95.5 bits (236), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 109/210 (51%), Gaps = 7/210 (3%)

Query: 17  FANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           F +++LLE A TH+S ++ ++       ERLEFLGD +L L+IS  LF  +    EG++S
Sbjct: 16  FEDQTLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIISEYLFAKYPKKTEGDMS 75

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
              + +V  E+ +  +R     ++I++     K       +I  D+ E+ + AL LD G+
Sbjct: 76  KLRSMIVREESLAGFSRFCSFDTYIKLGKGEEKSGGRNRDTILGDLFEAFLGALLLDKGV 135

Query: 133 EVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           +    F+ K      ++ G F   +D KT LQE   +K  +  +Y+V    GP H  +F 
Sbjct: 136 DEVRRFL-KLVMIPQVEKGNFEKVKDYKTCLQELLQSKGDIAIDYQVISEKGPAHAKQFE 194

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           V V ++    ++G+  SK+ AEQ AA   L
Sbjct: 195 VAVFVNEEVLSKGLGKSKKMAEQDAAKNAL 224


>gi|222100439|ref|YP_002535007.1| Ribonuclease 3 [Thermotoga neapolitana DSM 4359]
 gi|254807907|sp|B9K9K8|RNC_THENN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|221572829|gb|ACM23641.1| Ribonuclease 3 [Thermotoga neapolitana DSM 4359]
          Length = 240

 Score = 95.5 bits (236), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 115/218 (52%), Gaps = 11/218 (5%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ-------ESYERLEFLGDRILGLLISTLLFN 61
           L+KR+G  F +  LL +AL HSS ++  +       ES E+LEFLGD +L L +  +L+ 
Sbjct: 12  LQKRLGVLFNDEELLFRALCHSSYANEQKQAGREDVESNEKLEFLGDAVLELFVCEILYR 71

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +  A+ G+L+   +++ S E  ++V+R L+L  ++ +     K       SI AD  E+
Sbjct: 72  KYPEAEVGDLARVKSAVASEEVLARVSRRLELGKYLFLGKGEEKTGGRERDSILADAFEA 131

Query: 122 LIAALYLDGGIE-VAGTFVDKY--WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           L+AALYLD G + +   F D++  + ++ +K G+   D KT LQE    +    PEY + 
Sbjct: 132 LLAALYLDQGYQKIKDLFEDEFESYIEKIMK-GEILFDYKTALQEIVQREHKTPPEYVLV 190

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
                  +  F V V ++    A G   +K+ AE+ AA
Sbjct: 191 RTEKNGSEKLFVVEVRVNDETLAVGRGRTKKEAEKDAA 228


>gi|306836417|ref|ZP_07469394.1| ribonuclease III [Corynebacterium accolens ATCC 49726]
 gi|304567698|gb|EFM43286.1| ribonuclease III [Corynebacterium accolens ATCC 49726]
          Length = 256

 Score = 95.5 bits (236), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 115/225 (51%), Gaps = 8/225 (3%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLL 59
           +A+ +S L + +G A    +L   ALTH S ++   +  + ERLEFLGD +LGL ++  L
Sbjct: 18  AAVDHSPLLESLGVALEPENL-RLALTHRSFANENGHLPNNERLEFLGDAVLGLSVAAKL 76

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  + S  E ++S    S+VS    S +ARE++L   I +    +        SI AD  
Sbjct: 77  YVTYPSRPESDISKMRASIVSRYGLSDIAREINLGPHILLGKGEQSTGGRDKDSILADTT 136

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           E++  A+Y + G E A   + + + ++   A  SG+   D KT LQE         P Y 
Sbjct: 137 EAIFGAIYREHGFETARDVILRLFAEKIDNASVSGR-HLDWKTTLQELCAELKAPMPVYS 195

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            T  +GP+HD  F+ V  ++GL+   G   +K+ AEQ AA E  +
Sbjct: 196 AT-ATGPEHDQTFSAVATVAGLSVGNGQGHNKKLAEQQAAQEACQ 239


>gi|229098318|ref|ZP_04229265.1| Ribonuclease 3 [Bacillus cereus Rock3-29]
 gi|229104411|ref|ZP_04235080.1| Ribonuclease 3 [Bacillus cereus Rock3-28]
 gi|229117335|ref|ZP_04246713.1| Ribonuclease 3 [Bacillus cereus Rock1-3]
 gi|228666235|gb|EEL21699.1| Ribonuclease 3 [Bacillus cereus Rock1-3]
 gi|228679109|gb|EEL33317.1| Ribonuclease 3 [Bacillus cereus Rock3-28]
 gi|228685216|gb|EEL39147.1| Ribonuclease 3 [Bacillus cereus Rock3-29]
          Length = 245

 Score = 95.5 bits (236), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 111/223 (49%), Gaps = 7/223 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +   +++IG  F +  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 19  FKVFQEKIGITFTDEKLLTQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A EL   S + +             ++ ADV E+
Sbjct: 79  KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179
            I ALYLD G+E    F+ +    + +  G F    D K++LQE          EY++  
Sbjct: 139 FIGALYLDQGLETVWGFLKEIVYPK-INEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQ 197

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             GP H+  F   V ++ +A   G   SK+ AEQ AAAE LK+
Sbjct: 198 EKGPAHNREFVSRVTLNNVALGLGSGKSKKEAEQQAAAEALKK 240


>gi|167837348|ref|ZP_02464231.1| ribonuclease III [Burkholderia thailandensis MSMB43]
          Length = 452

 Score = 95.1 bits (235), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 65/193 (33%), Positives = 99/193 (51%), Gaps = 7/193 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +E R+ Y F N  LL +ALTH S S ++ E   RLEFLGD +L   ++ LLF  F    E
Sbjct: 1   MESRLRYEFRNAELLRQALTHRSHSATHNE---RLEFLGDSVLNCAVAALLFQRFGKLDE 57

Query: 69  GELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           G+LS VR N LV  ++  ++A+ L+++  +R+     +       SI AD  E++I A++
Sbjct: 58  GDLSRVRAN-LVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVF 116

Query: 128 LDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           +DGG E A   + + +      +      +DAKT LQE+        P Y V    G  H
Sbjct: 117 VDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAH 176

Query: 186 DPRFTVVVEISGL 198
           + +F V   +  L
Sbjct: 177 NQQFEVECTVPKL 189


>gi|78186018|ref|YP_374061.1| ribonuclease III [Chlorobium luteolum DSM 273]
 gi|90101633|sp|Q3B6L3|RNC_PELLD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|78165920|gb|ABB23018.1| RNAse III [Chlorobium luteolum DSM 273]
          Length = 276

 Score = 95.1 bits (235), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 100/210 (47%), Gaps = 15/210 (7%)

Query: 22  LLEKALTHSSISHS-----YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           L   ALTH S+ H         S +RLEFLGD +LGL+IS  L+  F    EGELS    
Sbjct: 47  LYATALTHRSMVHDTTAPEITRSNQRLEFLGDSVLGLIISEYLYRRFPEGTEGELSSYRA 106

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
            +V+ ++ +  AR LDL   + +     +      TS  AD  E+L  A+YLD G++   
Sbjct: 107 KIVNGKSLAGFARNLDLGIHLIIGESADQQRIRTSTSTLADAFEALTGAIYLDRGLDAVR 166

Query: 137 TFVDKYWKQRALKSGKF------RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
            F++    ++ + S  F        + K+ L E   +     P Y V    G +H+  FT
Sbjct: 167 EFIE----EQIIDSPAFEAMVSTENNHKSRLIEHTQSHQLPPPVYTVLSEEGAEHEKTFT 222

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           + V  +G    +G    K+ AEQ+AA E +
Sbjct: 223 IEVSCNGRRLGRGTALRKKDAEQLAAEEAM 252


>gi|227503342|ref|ZP_03933391.1| ribonuclease III [Corynebacterium accolens ATCC 49725]
 gi|227075845|gb|EEI13808.1| ribonuclease III [Corynebacterium accolens ATCC 49725]
          Length = 256

 Score = 95.1 bits (235), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 114/225 (50%), Gaps = 8/225 (3%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLL 59
           +A+ +S L + +G A    +L   ALTH S ++   +  + ERLEFLGD +LGL ++  L
Sbjct: 18  AAVDHSPLLESLGVALEPENL-RLALTHRSFANENGHLPNNERLEFLGDAVLGLSVAAKL 76

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  + S  E ++S    S+VS    S +ARE++L   I +    +        SI AD  
Sbjct: 77  YVTYPSRPESDISKMRASIVSRYGLSDIAREINLGPHILLGKGEQSTGGRDKDSILADTT 136

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           E++  A+Y + G E A   + + + ++   A  SG+   D KT LQE         P Y 
Sbjct: 137 EAIFGAIYREHGFETARDVILRLFAEKIDNASVSGR-HLDWKTTLQELCAELKAPMPVYS 195

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            T  +GP+HD  F+ V  ++GL    G   +K+ AEQ AA E  +
Sbjct: 196 AT-ATGPEHDQTFSAVATVAGLTVGNGQGHNKKLAEQQAAQEACQ 239


>gi|121996844|ref|YP_001001631.1| ribonuclease III [Halorhodospira halophila SL1]
 gi|121588249|gb|ABM60829.1| RNAse III [Halorhodospira halophila SL1]
          Length = 234

 Score = 95.1 bits (235), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 69/215 (32%), Positives = 106/215 (49%), Gaps = 6/215 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L++R+ Y F     L++A+TH S    + E   RLEFLGD +L  +++  +F+   +  E
Sbjct: 7   LQQRLDYQFLELERLQEAVTHRSAGGRHNE---RLEFLGDSVLNFVVAHEVFHRRPTDSE 63

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G LS    SLV+  + + +AR+++L   +R+     K       SI AD +E++  A+YL
Sbjct: 64  GTLSRLRASLVNRSSLAAIARDIELGDHLRLGGGELKSGGHRRDSILADALEAVFGAVYL 123

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D G E A   +   ++ R  +L      +D KT LQE   +     P Y+V    G  H 
Sbjct: 124 DAGFETAARVITGLYRSRLESLPDKAVLKDPKTRLQEVLQSTRRPLPGYQVLDVRGRAHH 183

Query: 187 PRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVL 220
            RF V   +S       G   S+R AEQ AA  +L
Sbjct: 184 QRFQVECRLSDSEQTTLGEAGSRRQAEQRAAEAML 218


>gi|312984414|ref|ZP_07791749.1| ribonuclease III [Lactobacillus crispatus CTV-05]
 gi|310894189|gb|EFQ43276.1| ribonuclease III [Lactobacillus crispatus CTV-05]
          Length = 229

 Score = 95.1 bits (235), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 72/213 (33%), Positives = 106/213 (49%), Gaps = 11/213 (5%)

Query: 17  FANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           F N  LLE+A THSS S+ +       YE+LEFLGD +L L +S  ++ H+    EGEL+
Sbjct: 18  FNNEKLLEEAFTHSSYSNEHPNDGIRDYEKLEFLGDAVLELAVSNYVYLHYPKLNEGELT 77

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
              +++V  E  S+ A E      I + +   K       ++  DV E+   AL+LD G+
Sbjct: 78  RLRSNIVRTEGFSEFAIECGFQDEIHLGNGEEKAGARHRKTLLEDVFEAFNGALFLDQGM 137

Query: 133 EVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG-PDHDPRF 189
                F+        +  G+F   RD KT+LQE       V  EY V   S  P H   F
Sbjct: 138 PAVEHFL-HLTVYPLIDKGEFDDSRDYKTDLQEVLQQDGPVNIEYTVISESQLPSH---F 193

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            V ++I+G   ++G   +K+AAEQ AA   L++
Sbjct: 194 VVELKINGKVESKGEGHNKKAAEQQAAKVALQK 226


>gi|145219011|ref|YP_001129720.1| RNAse III [Prosthecochloris vibrioformis DSM 265]
 gi|145205175|gb|ABP36218.1| RNAse III [Chlorobium phaeovibrioides DSM 265]
          Length = 259

 Score = 95.1 bits (235), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 66/206 (32%), Positives = 100/206 (48%), Gaps = 15/206 (7%)

Query: 26  ALTHSSISHS-----YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
           ALTH S  H         S +RLEFLGD ILGL+I+  LF     + EGELS     +V+
Sbjct: 51  ALTHRSAVHDPSTPLNTHSNQRLEFLGDAILGLVITDYLFRELPDSPEGELSNTRAKIVN 110

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140
            ++ +  AR + +   + +             S  AD +E+ I A++LD GI  A +F++
Sbjct: 111 RKSLAGFARSIKIGDHLILGESADHAKIRVSESTLADALEAFIGAIWLDRGISAATSFIN 170

Query: 141 KYWKQRALKSGKFR------RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
           ++     ++  +F        + K+ L E   A     P Y V    G +H+ RFTV V 
Sbjct: 171 EH----VIEHRRFNTLITAENNHKSRLIEHTQALHLPPPRYSVISEEGAEHEKRFTVEVS 226

Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVL 220
            +G    +G+   K+ AEQ AAAE +
Sbjct: 227 CNGKVLGRGIAARKKDAEQHAAAEAM 252


>gi|291320365|ref|YP_003515628.1| ribonuclease III [Mycoplasma agalactiae]
 gi|290752699|emb|CBH40673.1| Ribonuclease III (RNase III) [Mycoplasma agalactiae]
          Length = 226

 Score = 95.1 bits (235), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 66/202 (32%), Positives = 108/202 (53%), Gaps = 8/202 (3%)

Query: 25  KALTH-SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83
           +A TH SS+++S  ++Y+ LEFLGD IL   +S +LFN F    +G+L++  + LV  ++
Sbjct: 23  QAFTHGSSVANSKGKNYQTLEFLGDAILQFYVSAILFNSFKDKNQGQLTLIRSKLVCTDS 82

Query: 84  CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143
            +Q+A  L L  F+ +SS++          + AD+ ESL+AA++LD G+     F+DK  
Sbjct: 83  LNQIADLLKLKDFLVLSSNVVATEVLSSKKVGADIFESLVAAIFLDQGLPKVKEFLDKTL 142

Query: 144 KQ--RALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
               +  K GK   +D+KT LQE+  + F     +  T++S    +  F       G   
Sbjct: 143 LPLVKQYKEGKIELKDSKTRLQEYMQS-FSKKTVFYQTYQS---ENNLFKAEAIYEGNVY 198

Query: 201 AQGMDCSKRAAEQVAAAEVLKR 222
             G+  SK  AE+ AA + L +
Sbjct: 199 GSGVGKSKHEAEENAANDALNK 220


>gi|227890258|ref|ZP_04008063.1| ribonuclease III [Lactobacillus johnsonii ATCC 33200]
 gi|227849072|gb|EEJ59158.1| ribonuclease III [Lactobacillus johnsonii ATCC 33200]
          Length = 226

 Score = 95.1 bits (235), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 70/206 (33%), Positives = 101/206 (49%), Gaps = 7/206 (3%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            L+K+ G  F N  LLE A THSS +  HS ++ YE+LEFLGD +L L +S  L+ HF  
Sbjct: 9   NLKKKYGIKFNNEKLLEDAFTHSSYANEHSGRKDYEKLEFLGDAVLELAVSDYLYRHFPR 68

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGEL+   +++V  E  S+ A E      I +     K       ++  DV E+   A
Sbjct: 69  LNEGELTRMRSNIVRTEGFSEFAIECGFPEEIDLGKGEEKAGARKRKTLLEDVFEAFNGA 128

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           L+LD G+     F+        +  G F   RD KTELQE       V  EY+V   S  
Sbjct: 129 LFLDQGMPAVQHFL-HLTVYPLIAEGDFNASRDYKTELQERLQVNGPVKIEYQVI--SED 185

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKR 209
           +  P F V + ++G   ++G   +K+
Sbjct: 186 ESKPSFKVQLLVNGEKVSEGQGRNKK 211


>gi|29123082|gb|AAO65849.1| ribonuclease III [Mus musculus]
          Length = 1021

 Score = 95.1 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 74/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
           + +  E+ IG  F +  LL +A T  ++  +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 753 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 812

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L++  +SLV+  T ++VA EL +  +  V++D  K   +  T   AD++ES 
Sbjct: 813 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-VTNDKTKRPVALRTKTLADLLESF 871

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174
           IAALY+D  +E   TF++  +  R LK     +   D K++LQ+         K    P 
Sbjct: 872 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 930

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           YK     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 931 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 978



 Score = 56.6 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
           T S I+H+     ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +
Sbjct: 605 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 659

Query: 88  ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135
           A++L+L  F+  +     D+C  S +    A+  E+LI A+YL+G +E A
Sbjct: 660 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 707


>gi|119713601|gb|ABL97652.1| ribonuclease III [uncultured marine bacterium EB0_39H12]
          Length = 218

 Score = 94.7 bits (234), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 114/220 (51%), Gaps = 16/220 (7%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y+ LE    Y+F +  L + ALTH S+S     + ERLEFLGD IL L +S  LFN + +
Sbjct: 6   YTNLE----YSFQDEELFQLALTHKSLS---SHNNERLEFLGDAILNLYVSERLFNTYGN 58

Query: 66  AKEGELSVRFN-SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            KEG+L+ RF  S+VS E   +VA  L+L++ I+    L K       SI  +V+E+LI 
Sbjct: 59  LKEGKLT-RFKASIVSRENLHRVAINLELSNHIK----LGKGESLQGNSILGNVLEALIG 113

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A++LD         +D  +K   LK    +  +D K+ LQE    ++   P Y +  +  
Sbjct: 114 AIFLDSDYSETKNVLDNIFKDDFLKLVEEEELKDPKSTLQELIQKQYQSLPIYSLNEQIS 173

Query: 183 PDHDPRFTVVVE-ISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              + +F V    + G    QG   +++ AE  AA+ +L+
Sbjct: 174 DKKENQFEVTCSVVEGNLVTQGKGNTRKGAELNAASNMLE 213


>gi|299144133|ref|ZP_07037213.1| ribonuclease III [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518618|gb|EFI42357.1| ribonuclease III [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 233

 Score = 94.7 bits (234), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 106/216 (49%), Gaps = 6/216 (2%)

Query: 15  YAFANRSLLEKALTHSSI--SHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
           Y F N   +  ALTHSS    H+ ++  S ERLEFLGD +L L+I    +    + KEG 
Sbjct: 14  YEFKNDKYINIALTHSSYINEHNLKDTVSNERLEFLGDAVLDLIIGEYFYYSHKNLKEGS 73

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           LS   + +V+  +  ++A  + +  F+       K+  +   S  +D +E+LI A+Y+DG
Sbjct: 74  LSKLRSKVVNENSLYKIATNISIGDFMYFGKGEIKNKGNLRESTLSDCLEALIGAIYIDG 133

Query: 131 GIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           G++     + + +  R ++    +   D KT LQE          +Y +    GP +D  
Sbjct: 134 GLDAVRKVILRLFHDRIMEVENLKSLEDYKTMLQECIQRNKMGNIKYVIYDEKGPSNDKV 193

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           F   V I+ +    G   +K+++EQ+AA   L R G
Sbjct: 194 FYSNVLINDIIIGNGYGKTKKSSEQLAAKNALIRIG 229


>gi|58040241|ref|YP_192205.1| ribonuclease III [Gluconobacter oxydans 621H]
 gi|58002655|gb|AAW61549.1| Ribonuclease III [Gluconobacter oxydans 621H]
          Length = 174

 Score = 94.7 bits (234), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 87/166 (52%), Gaps = 1/166 (0%)

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L   +   +EG L  R   LVS    +++A ++ L++ +++S          ++SI+AD 
Sbjct: 5   LLERYPDEQEGALGPRHAHLVSRTVLAEIADQVGLSASLQISPHEEDAGIRRLSSIRADA 64

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +E+L+ ALYLDGG+E A   V +YW+ R   + +  ++ KT LQE+  ++    P Y++ 
Sbjct: 65  MEALLGALYLDGGLEPARRVVHQYWQSRIESADRPHKEPKTLLQEYMLSQGLPLPHYELL 124

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              GP H P F V V   G     G   SKR AE  AA  +LK  G
Sbjct: 125 SSDGPSHAPVFRVSVTTMGHT-GTGEAGSKRLAESAAATALLKHLG 169


>gi|149183216|ref|ZP_01861662.1| ribonuclease III [Bacillus sp. SG-1]
 gi|148849081|gb|EDL63285.1| ribonuclease III [Bacillus sp. SG-1]
          Length = 249

 Score = 94.7 bits (234), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 108/226 (47%), Gaps = 11/226 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++   +++    F N  LL +A THSS  + ++    E  ERLEFLGD +L L +S  L+
Sbjct: 19  KFKEFQRKHNIKFNNEKLLRQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTVSQFLY 78

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             + +  EGEL+    ++V   +    A EL     + +             ++ ADV E
Sbjct: 79  KKYPTMSEGELTKLRAAIVCEPSLVTFANELKFGELVLLGKGEELTGGRERPALLADVFE 138

Query: 121 SLIAALYLDGGIEVAGTFVDK--YWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYK 176
           + I ALYLD G+E   + +++  Y K   + SG F    D K++LQE        T EY 
Sbjct: 139 AFIGALYLDQGLEPVLSILEENVYPK---INSGAFSHVMDFKSQLQELVQRDSAGTIEYG 195

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +    GP H+  F   V ++G     G   SK+ AEQ AA   L++
Sbjct: 196 ILQEKGPAHNREFVSRVCLNGEELGIGTGRSKKEAEQHAAQMALEK 241


>gi|227878860|ref|ZP_03996766.1| ribonuclease III [Lactobacillus crispatus JV-V01]
 gi|256843377|ref|ZP_05548865.1| ribonuclease III [Lactobacillus crispatus 125-2-CHN]
 gi|256849801|ref|ZP_05555232.1| double stranded RNA-specific ribonuclease RNase [Lactobacillus
           crispatus MV-1A-US]
 gi|262046954|ref|ZP_06019914.1| ribonuclease III [Lactobacillus crispatus MV-3A-US]
 gi|293381175|ref|ZP_06627183.1| ribonuclease III [Lactobacillus crispatus 214-1]
 gi|227861551|gb|EEJ69164.1| ribonuclease III [Lactobacillus crispatus JV-V01]
 gi|256614797|gb|EEU19998.1| ribonuclease III [Lactobacillus crispatus 125-2-CHN]
 gi|256713290|gb|EEU28280.1| double stranded RNA-specific ribonuclease RNase [Lactobacillus
           crispatus MV-1A-US]
 gi|260572936|gb|EEX29496.1| ribonuclease III [Lactobacillus crispatus MV-3A-US]
 gi|290922215|gb|EFD99209.1| ribonuclease III [Lactobacillus crispatus 214-1]
          Length = 229

 Score = 94.7 bits (234), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 72/213 (33%), Positives = 106/213 (49%), Gaps = 11/213 (5%)

Query: 17  FANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           F N  LLE+A THSS S+ +       YE+LEFLGD +L L +S  ++ H+    EGEL+
Sbjct: 18  FNNEKLLEEAFTHSSYSNEHPNDGIRDYEKLEFLGDAVLELAVSNYVYLHYPKLNEGELT 77

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
              +++V  E  S+ A E      I + +   K       ++  DV E+   AL+LD G+
Sbjct: 78  RLRSNIVRTEGFSEFAIECGFQDEIHLGNGEEKAGARHRKTLLEDVFEAFNGALFLDQGM 137

Query: 133 EVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG-PDHDPRF 189
                F+        +  G+F   RD KT+LQE       V  EY V   S  P H   F
Sbjct: 138 PAVEHFL-HLTVYPLIDKGEFDDSRDYKTDLQEVLQQDGPVNIEYTVISESQLPSH---F 193

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            V ++I+G   ++G   +K+AAEQ AA   L++
Sbjct: 194 VVELKINGKVESKGEGHNKKAAEQQAAKFALQK 226


>gi|221633356|ref|YP_002522581.1| ribonuclease III [Thermomicrobium roseum DSM 5159]
 gi|221156675|gb|ACM05802.1| ribonuclease III [Thermomicrobium roseum DSM 5159]
          Length = 252

 Score = 94.7 bits (234), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 81/227 (35%), Positives = 112/227 (49%), Gaps = 14/227 (6%)

Query: 13  IGYAFANRSLLEKALTH--------SSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +G AF    LL +ALTH         S   + +E+ ERLEFLGD +L LL+S  L+  F 
Sbjct: 25  LGIAFRRPDLLRQALTHLSYVYERSRSTQAAVEEANERLEFLGDAVLELLVSEFLYRRFP 84

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS-SDLRKDVCSFMTSIQADVVESLI 123
           +A EGEL+    +LV   T ++ AR   L  F+ +  S++ +        I A   E+++
Sbjct: 85  TASEGELTAYRAALVRTPTLARWARRFRLDEFLYLGRSEVPRPGRPVRERILAGAFEAVL 144

Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            ALYLD GI V   F+ +   + A  L +     + K  LQE    +  +TP Y+    +
Sbjct: 145 GALYLDRGIRVVRRFLHRLLLEEAEGLIAIGQNENYKGRLQELIQDRLRITPVYRTIAVT 204

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR---EGI 225
           GP H   FT  V I       G   SKRAAEQ AA   L+R   EGI
Sbjct: 205 GPAHQRTFTAEVLIGERPYGVGHGPSKRAAEQEAARRALERLRAEGI 251


>gi|57530438|ref|NP_001006379.1| ribonuclease 3 [Gallus gallus]
 gi|53134951|emb|CAG32380.1| hypothetical protein RCJMB04_24a21 [Gallus gallus]
          Length = 1336

 Score = 94.7 bits (234), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 74/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  ++  +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1068 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1127

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  F  +++D  K   +  T   AD++ES 
Sbjct: 1128 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFA-ITNDKTKRPVALRTKTLADLLESF 1186

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174
            IAALY+D  +E   TF++  +  R LK     +   D K++LQ+         K    P 
Sbjct: 1187 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1245

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YK     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1246 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1293



 Score = 54.3 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 9/108 (8%)

Query: 30   SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAR 89
            S I+H+     ERLEFLGD ++  L S  L+  F + +EG L+    ++V  +  + +A+
Sbjct: 922  SRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPTLEEGGLATYRTAIVQNQHLAMLAK 976

Query: 90   ELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135
            +L+L  F+  +     D+C  S +    A+  E+LI A+YL+G +E A
Sbjct: 977  KLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1022


>gi|169350084|ref|ZP_02867022.1| hypothetical protein CLOSPI_00826 [Clostridium spiroforme DSM 1552]
 gi|169293297|gb|EDS75430.1| hypothetical protein CLOSPI_00826 [Clostridium spiroforme DSM 1552]
          Length = 226

 Score = 94.7 bits (234), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 110/209 (52%), Gaps = 12/209 (5%)

Query: 22  LLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           + ++A TH+S ++  +     YERLEFLGD +L   +S  LF+ + +  EG L+   + L
Sbjct: 19  IFKQAFTHTSYANENKLKNHDYERLEFLGDAVLQYHVSRYLFDLYPTMPEGRLTKLRSKL 78

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138
           V  E+ ++ ARELDL ++I + +    +      S+ AD+ E+ + A+  D G+E    +
Sbjct: 79  VREESLARFARELDLGTYIYLGAGEINNGGRDRDSVLADIFEAFMGAICHDCGME----Y 134

Query: 139 VDKYWKQ---RALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
           VD   K+   R +    +    D KT+LQE   A    T  Y++   +GP ++P F + V
Sbjct: 135 VDMMLKKTIYRHVNDVNYDDITDFKTKLQELIQADQRKTVTYELLSATGPSNNPVFEMAV 194

Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            +  +    G+  SK+ AEQ AA + L +
Sbjct: 195 RMDDMILGTGIGSSKKRAEQQAAKDALNK 223


>gi|30021937|ref|NP_833568.1| ribonuclease III [Bacillus cereus ATCC 14579]
 gi|206971258|ref|ZP_03232209.1| ribonuclease III [Bacillus cereus AH1134]
 gi|218232410|ref|YP_002368650.1| ribonuclease III [Bacillus cereus B4264]
 gi|218899002|ref|YP_002447413.1| ribonuclease III [Bacillus cereus G9842]
 gi|228902352|ref|ZP_04066509.1| Ribonuclease 3 [Bacillus thuringiensis IBL 4222]
 gi|228909674|ref|ZP_04073497.1| Ribonuclease 3 [Bacillus thuringiensis IBL 200]
 gi|228922603|ref|ZP_04085903.1| Ribonuclease 3 [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228954126|ref|ZP_04116154.1| Ribonuclease 3 [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228960065|ref|ZP_04121729.1| Ribonuclease 3 [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228973866|ref|ZP_04134442.1| Ribonuclease 3 [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228980456|ref|ZP_04140766.1| Ribonuclease 3 [Bacillus thuringiensis Bt407]
 gi|229047536|ref|ZP_04193126.1| Ribonuclease 3 [Bacillus cereus AH676]
 gi|229071347|ref|ZP_04204570.1| Ribonuclease 3 [Bacillus cereus F65185]
 gi|229081104|ref|ZP_04213614.1| Ribonuclease 3 [Bacillus cereus Rock4-2]
 gi|229111320|ref|ZP_04240873.1| Ribonuclease 3 [Bacillus cereus Rock1-15]
 gi|229129125|ref|ZP_04258098.1| Ribonuclease 3 [Bacillus cereus BDRD-Cer4]
 gi|229146420|ref|ZP_04274791.1| Ribonuclease 3 [Bacillus cereus BDRD-ST24]
 gi|229152048|ref|ZP_04280243.1| Ribonuclease 3 [Bacillus cereus m1550]
 gi|229180125|ref|ZP_04307469.1| Ribonuclease 3 [Bacillus cereus 172560W]
 gi|229192018|ref|ZP_04318988.1| Ribonuclease 3 [Bacillus cereus ATCC 10876]
 gi|296504344|ref|YP_003666044.1| ribonuclease III [Bacillus thuringiensis BMB171]
 gi|38372411|sp|Q819V8|RNC_BACCR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226735367|sp|B7IUK8|RNC_BACC2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226735368|sp|B7HDX2|RNC_BACC4 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|29897493|gb|AAP10769.1| Ribonuclease III [Bacillus cereus ATCC 14579]
 gi|206734030|gb|EDZ51201.1| ribonuclease III [Bacillus cereus AH1134]
 gi|218160367|gb|ACK60359.1| ribonuclease III [Bacillus cereus B4264]
 gi|218544165|gb|ACK96559.1| ribonuclease III [Bacillus cereus G9842]
 gi|228591569|gb|EEK49418.1| Ribonuclease 3 [Bacillus cereus ATCC 10876]
 gi|228603334|gb|EEK60811.1| Ribonuclease 3 [Bacillus cereus 172560W]
 gi|228631397|gb|EEK88031.1| Ribonuclease 3 [Bacillus cereus m1550]
 gi|228637053|gb|EEK93512.1| Ribonuclease 3 [Bacillus cereus BDRD-ST24]
 gi|228654362|gb|EEL10227.1| Ribonuclease 3 [Bacillus cereus BDRD-Cer4]
 gi|228672096|gb|EEL27387.1| Ribonuclease 3 [Bacillus cereus Rock1-15]
 gi|228702148|gb|EEL54624.1| Ribonuclease 3 [Bacillus cereus Rock4-2]
 gi|228711801|gb|EEL63753.1| Ribonuclease 3 [Bacillus cereus F65185]
 gi|228723783|gb|EEL75138.1| Ribonuclease 3 [Bacillus cereus AH676]
 gi|228779276|gb|EEM27533.1| Ribonuclease 3 [Bacillus thuringiensis Bt407]
 gi|228785891|gb|EEM33894.1| Ribonuclease 3 [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228799581|gb|EEM46534.1| Ribonuclease 3 [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228805446|gb|EEM52037.1| Ribonuclease 3 [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228837032|gb|EEM82373.1| Ribonuclease 3 [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228849963|gb|EEM94794.1| Ribonuclease 3 [Bacillus thuringiensis IBL 200]
 gi|228857321|gb|EEN01824.1| Ribonuclease 3 [Bacillus thuringiensis IBL 4222]
 gi|296325396|gb|ADH08324.1| ribonuclease III [Bacillus thuringiensis BMB171]
 gi|326941618|gb|AEA17514.1| ribonuclease III [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 245

 Score = 94.7 bits (234), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 111/223 (49%), Gaps = 7/223 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +   +++IG  F +  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 19  FKVFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A EL   S + +             ++ ADV E+
Sbjct: 79  KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179
            I ALYLD G+E    F+ +    + +  G F    D K++LQE          EY++  
Sbjct: 139 FIGALYLDQGLETVWEFLKEIVYPK-INEGAFSHVMDYKSQLQELIQRDGSGNVEYQILQ 197

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             GP H+  F   V ++ +A   G   SK+ AEQ AAAE LK+
Sbjct: 198 EKGPAHNREFVSRVTLNNVALGLGSGKSKKEAEQQAAAEALKK 240


>gi|160333099|ref|NP_001103942.1| ribonuclease 3 [Danio rerio]
 gi|124481653|gb|AAI33135.1| Zgc:158612 [Danio rerio]
          Length = 1289

 Score = 94.7 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 74/228 (32%), Positives = 113/228 (49%), Gaps = 12/228 (5%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E  IG  F +  LL +A T  ++  +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1026 KLTNFEDAIGVLFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1085

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  F  +++D  K   +  T   AD++ES 
Sbjct: 1086 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFA-ITNDKTKRPVALRTKTLADLLESF 1144

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174
            IAALY+D  +E   TF++  +  R LK     +   D K++LQ+         K    P 
Sbjct: 1145 IAALYIDKDLEFVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1203

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YK     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1204 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1251



 Score = 58.9 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 77/184 (41%), Gaps = 59/184 (32%)

Query: 9   LEKRIGYAFANRSLLEKALTHSS------------------------------ISHSYQE 38
           L+K IGY F  R LL+ A+TH S                              + H Y  
Sbjct: 799 LDKLIGYMFKERCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMYMR 858

Query: 39  SY-------------------------ERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
                                      ERLEFLGD ++  L S  L++ F S +EG L+ 
Sbjct: 859 KKGINTLINIMSRLGQDDPSPSRINHNERLEFLGDAVVEFLTSVHLYHLFPSLEEGGLAT 918

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGG 131
              ++V  +  + +A++L+L  F+  +     D+C  S +    A+  E+LI A+YL+GG
Sbjct: 919 YRTAIVQNQHLAMLAKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGG 976

Query: 132 IEVA 135
           +E A
Sbjct: 977 LEEA 980


>gi|73953918|ref|XP_868248.1| PREDICTED: similar to Ribonuclease III (RNase III) (Drosha) (p241)
           isoform 7 [Canis familiaris]
          Length = 1016

 Score = 94.7 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
           + +  E+ IG  F +  LL +A T  ++  +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 748 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 807

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 808 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 866

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174
           IAALY+D  +E   TF++  +  R LK     +   D K++LQ+         K    P 
Sbjct: 867 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 925

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           YK     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 926 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 973



 Score = 57.0 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
           T S I+H+     ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +
Sbjct: 600 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 654

Query: 88  ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135
           A++L+L  F+  +     D+C  S +    A+  E+LI A+YL+G +E A
Sbjct: 655 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 702


>gi|82750837|ref|YP_416578.1| ribonuclease III [Staphylococcus aureus RF122]
 gi|90101646|sp|Q2YXI3|RNC_STAAB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|82656368|emb|CAI80786.1| Ribonuclease III [Staphylococcus aureus RF122]
          Length = 243

 Score = 94.7 bits (234), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 108/226 (47%), Gaps = 11/226 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           R+ T    +G+ + N  L ++A +HSS  + +     +  ERLEFLGD +L L +S  LF
Sbjct: 16  RFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLF 75

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           +   +  EG L+    ++V   +    A ++ L   I +     K       S+ +DV E
Sbjct: 76  DKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLISDVFE 135

Query: 121 SLIAALYLDGGIEVAGTFVDK----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           + I ALYLD G+++   F +K    + +Q  L       D KT+ QE+ H +      Y 
Sbjct: 136 AFIGALYLDQGLDIVWKFAEKVIFPHVEQNELLG---VVDFKTQFQEYVHQQNKGDVTYN 192

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +    GP H   FT  V + G A A+G   +K+ +EQ AA    K+
Sbjct: 193 LIKEEGPAHHRLFTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQ 238


>gi|75762036|ref|ZP_00741948.1| Ribonuclease III [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|74490482|gb|EAO53786.1| Ribonuclease III [Bacillus thuringiensis serovar israelensis ATCC
           35646]
          Length = 262

 Score = 94.7 bits (234), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 111/223 (49%), Gaps = 7/223 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +   +++IG  F +  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 36  FKVFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 95

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A EL   S + +             ++ ADV E+
Sbjct: 96  KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 155

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179
            I ALYLD G+E    F+ +    + +  G F    D K++LQE          EY++  
Sbjct: 156 FIGALYLDQGLETVWEFLKEIVYPK-INEGAFSHVMDYKSQLQELIQRDGSGNVEYQILQ 214

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             GP H+  F   V ++ +A   G   SK+ AEQ AAAE LK+
Sbjct: 215 EKGPAHNREFVSRVTLNNVALGLGSGKSKKEAEQQAAAEALKK 257


>gi|224045068|ref|XP_002199233.1| PREDICTED: ribonuclease III, nuclear [Taeniopygia guttata]
          Length = 1338

 Score = 94.7 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 74/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  ++  +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1070 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1129

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  F  +++D  K   +  T   AD++ES 
Sbjct: 1130 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFA-ITNDKTKRPVTLRTKTLADLLESF 1188

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174
            IAALY+D  +E   TF++  +  R LK     +   D K++LQ+         K    P 
Sbjct: 1189 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1247

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YK     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1248 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1295



 Score = 54.3 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 9/108 (8%)

Query: 30   SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAR 89
            S I+H+     ERLEFLGD ++  L S  L+  F + +EG L+    ++V  +  + +A+
Sbjct: 924  SRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPTLEEGGLATYRTAIVQNQHLAMLAK 978

Query: 90   ELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135
            +L+L  F+  +     D+C  S +    A+  E+LI A+YL+G +E A
Sbjct: 979  KLELERFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1024


>gi|325265700|ref|ZP_08132389.1| ribonuclease III [Kingella denitrificans ATCC 33394]
 gi|324982831|gb|EGC18454.1| ribonuclease III [Kingella denitrificans ATCC 33394]
          Length = 242

 Score = 94.7 bits (234), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 108/215 (50%), Gaps = 6/215 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L++R+GY F    LL++ALTH S     + + ERLEF+GD I+  +++ +L++ F    E
Sbjct: 13  LQQRLGYTFRQPELLQQALTHRSAG---KNNNERLEFVGDGIVNFVVAQMLYHAFPDLPE 69

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G LSV    LV     +++AREL + + + +     K       SI AD +E+L AA+ L
Sbjct: 70  GRLSVLRTHLVKEAALAEMARELGVGAALTLGVGELKSGGHDRPSILADALEALFAAIRL 129

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D  +      + + + QR   +   +  +D KT LQE   A     P+Y++  ++G    
Sbjct: 130 DADLPTVERIIQQLFSQRIAHIDQHQPAKDNKTRLQEALQACRLPLPKYRIEKQTGEGEH 189

Query: 187 PRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVL 220
            +F V  ++  L         S+R AEQ  A + L
Sbjct: 190 AQFDVSCDLGELGKITYAHAHSRREAEQECARQAL 224


>gi|42782941|ref|NP_980188.1| ribonuclease III [Bacillus cereus ATCC 10987]
 gi|47570283|ref|ZP_00240932.1| ribonuclease III [Bacillus cereus G9241]
 gi|206978506|ref|ZP_03239364.1| ribonuclease III [Bacillus cereus H3081.97]
 gi|217961269|ref|YP_002339837.1| ribonuclease III [Bacillus cereus AH187]
 gi|222097294|ref|YP_002531351.1| ribonuclease iii [Bacillus cereus Q1]
 gi|228986992|ref|ZP_04147118.1| Ribonuclease 3 [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|229157425|ref|ZP_04285503.1| Ribonuclease 3 [Bacillus cereus ATCC 4342]
 gi|229197960|ref|ZP_04324674.1| Ribonuclease 3 [Bacillus cereus m1293]
 gi|81409451|sp|Q732M1|RNC_BACC1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226735369|sp|B7HLI2|RNC_BACC7 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807238|sp|B9IVD8|RNC_BACCQ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|42738868|gb|AAS42796.1| ribonuclease III [Bacillus cereus ATCC 10987]
 gi|47553047|gb|EAL11449.1| ribonuclease III [Bacillus cereus G9241]
 gi|206743285|gb|EDZ54734.1| ribonuclease III [Bacillus cereus H3081.97]
 gi|217063842|gb|ACJ78092.1| ribonuclease III [Bacillus cereus AH187]
 gi|221241352|gb|ACM14062.1| ribonuclease III [Bacillus cereus Q1]
 gi|228585439|gb|EEK43543.1| Ribonuclease 3 [Bacillus cereus m1293]
 gi|228626152|gb|EEK82901.1| Ribonuclease 3 [Bacillus cereus ATCC 4342]
 gi|228772770|gb|EEM21210.1| Ribonuclease 3 [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|324327746|gb|ADY23006.1| ribonuclease III [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 245

 Score = 94.7 bits (234), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 111/223 (49%), Gaps = 7/223 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +   +++IG  F +  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 19  FKVFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A EL   S + +             ++ ADV E+
Sbjct: 79  KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179
            I ALYLD G+E    F+ +    + +  G F    D K++LQE          EY++  
Sbjct: 139 FIGALYLDQGLETVWGFLKEIVYPK-INEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQ 197

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             GP H+  F   V ++ +A   G   SK+ AEQ AAAE LK+
Sbjct: 198 EKGPAHNREFVSRVTLNNVALGLGSGKSKKEAEQQAAAEALKK 240


>gi|73953908|ref|XP_854135.1| PREDICTED: similar to Ribonuclease III (RNase III) (Drosha) (p241)
            isoform 2 [Canis familiaris]
          Length = 1365

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  ++  +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1097 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1156

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1157 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1215

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174
            IAALY+D  +E   TF++  +  R LK     +   D K++LQ+         K    P 
Sbjct: 1216 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1274

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YK     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1275 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1322



 Score = 56.6 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%)

Query: 28   THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
            T S I+H+     ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +
Sbjct: 949  TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 1003

Query: 88   ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135
            A++L+L  F+  +     D+C  S +    A+  E+LI A+YL+G +E A
Sbjct: 1004 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1051


>gi|7022183|dbj|BAA91511.1| unnamed protein product [Homo sapiens]
          Length = 769

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
           + +  E+ IG  F +  LL +A T  ++  +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 501 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 560

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 561 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 619

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174
           IAALY+D  +E   TF++  +  R LK     +   D K++LQ+         K    P 
Sbjct: 620 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 678

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           YK     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 679 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 726



 Score = 56.6 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
           T S I+H+     ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +
Sbjct: 353 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 407

Query: 88  ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135
           A++L+L  F+  +     D+C  S +    A+  E+LI A+YL+G +E A
Sbjct: 408 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 455


>gi|212702556|ref|ZP_03310684.1| hypothetical protein DESPIG_00579 [Desulfovibrio piger ATCC 29098]
 gi|212673997|gb|EEB34480.1| hypothetical protein DESPIG_00579 [Desulfovibrio piger ATCC 29098]
          Length = 243

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/230 (34%), Positives = 116/230 (50%), Gaps = 22/230 (9%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLIST 57
           +SA     +E+ + Y F+    +  ALTHSS ++ +   Q   ERLEFLGD +L L IS 
Sbjct: 11  ISAADLERIERILDYHFSRPERVALALTHSSWANEHGLGQAHNERLEFLGDAVLELCISW 70

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF  F  A+EG+++   + LV   + +Q ARE  +   +R+     +       ++ +D
Sbjct: 71  ELFTRFPQAREGDMTRVRSQLVGTTSLAQRARETGIDQLLRLGRGEEQQGGRSRDAVLSD 130

Query: 118 VVESLIAALYLDGGIEVA--------GTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAK 168
           V E+++A++Y DGG   A        GT +D+      +  GK + +D KT LQE + A 
Sbjct: 131 VFEAVLASVYEDGGYAAAQKVVARIFGTLLDE------VSVGKPKTKDFKTSLQERSVAL 184

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEI-SGLA-PAQGMDCSKRAAEQVAA 216
           F   P Y      GP+H   FTV V + SG    A G  C K  AEQ AA
Sbjct: 185 FHDRPVYTTLACEGPEHARHFTVQVSLPSGQQFTASGSSCKK--AEQEAA 232


>gi|296117605|ref|ZP_06836189.1| ribonuclease III [Corynebacterium ammoniagenes DSM 20306]
 gi|295969336|gb|EFG82577.1| ribonuclease III [Corynebacterium ammoniagenes DSM 20306]
          Length = 244

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/186 (35%), Positives = 95/186 (51%), Gaps = 5/186 (2%)

Query: 23  LEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
           L  ALTH S +  H +  + ERLEFLGD +LGL I+  L+  + +  E ++S    S+VS
Sbjct: 38  LRLALTHRSFANEHGHLPNNERLEFLGDAVLGLSIAARLYEKYPTRPESDISKMRASIVS 97

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140
               + VARE+ L +FI +             SI AD  E+L  A+YL  G E A   + 
Sbjct: 98  RFGLADVAREIGLGAFILLGKGEANSNGRDKDSILADTTEALFGAIYLQHGFETARRVIL 157

Query: 141 KYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
           + + Q+  A  S +   D KT LQE    +   TP+Y  T  +GP+HD  FT  V + G 
Sbjct: 158 ELFAQKVDAAVSTRNHMDWKTTLQELCAERKLPTPDYSAT-STGPEHDQLFTAQVHVDGQ 216

Query: 199 APAQGM 204
              +G+
Sbjct: 217 LLGEGV 222


>gi|169261416|gb|ACA52288.1| nuclear ribonuclease III protein [Xenopus tropicalis]
          Length = 1325

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 74/228 (32%), Positives = 113/228 (49%), Gaps = 12/228 (5%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  ++  +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1061 KLTKFEEAIGVEFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1120

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  F  +++D  K      T   AD++ES 
Sbjct: 1121 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFA-ITNDKTKRPVVLRTKTLADLLESF 1179

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174
            IAALY+D  +E   TF++  +  R LK     +   D K++LQ+         K    P 
Sbjct: 1180 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1238

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YK     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1239 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1286



 Score = 55.1 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 37/110 (33%), Positives = 62/110 (56%), Gaps = 9/110 (8%)

Query: 28   THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
            T S I+H+     ERLEFLGD ++  L S  L+  F   +EG L+    ++V  +  + +
Sbjct: 913  TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPLLEEGGLATYRTAIVQNQHLAML 967

Query: 88   ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135
            A++L+L  F+  +     D+C  S +    A+  E+L+ A+YL+GG+E A
Sbjct: 968  AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALMGAVYLEGGLEEA 1015


>gi|229086402|ref|ZP_04218578.1| Ribonuclease 3 [Bacillus cereus Rock3-44]
 gi|228696918|gb|EEL49727.1| Ribonuclease 3 [Bacillus cereus Rock3-44]
          Length = 245

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 112/223 (50%), Gaps = 7/223 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           + T +++IG  F +  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 19  FKTFQQKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A EL   + + +             ++ ADV E+
Sbjct: 79  KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGNLVLLGKGEEMTGGRERPALLADVFEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179
            I ALYLD G++    F+ +    + +  G F    D K++LQE          EY++  
Sbjct: 139 FIGALYLDQGLDTVWGFLKEIVYPK-INEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQ 197

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             GP H+  F   V ++ +A   G   SK+ AEQ AAAE LK+
Sbjct: 198 EKGPAHNREFVSRVTLNNVALGLGSGKSKKEAEQQAAAEALKK 240


>gi|34784428|gb|AAH57687.1| Rnasen protein [Mus musculus]
          Length = 942

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
           + +  E+ IG  F +  LL +A T  ++  +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 674 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 733

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 734 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 792

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174
           IAALY+D  +E   TF++  +  R LK     +   D K++LQ+         K    P 
Sbjct: 793 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 851

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           YK     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 852 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 899



 Score = 56.6 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
           T S I+H+     ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +
Sbjct: 526 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 580

Query: 88  ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135
           A++L+L  F+  +     D+C  S +    A+  E+LI A+YL+G +E A
Sbjct: 581 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 628


>gi|42519393|ref|NP_965323.1| ribonuclease III [Lactobacillus johnsonii NCC 533]
 gi|81667674|sp|Q74IP8|RNC_LACJO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|41583681|gb|AAS09289.1| ribonuclease III [Lactobacillus johnsonii NCC 533]
 gi|329667082|gb|AEB93030.1| ribonuclease III [Lactobacillus johnsonii DPC 6026]
          Length = 226

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/207 (33%), Positives = 100/207 (48%), Gaps = 7/207 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             L+K+ G  F N  LLE A THSS +  H  ++ YE+LEFLGD +L L +S  L+ HF 
Sbjct: 8   QNLKKKYGIKFNNEKLLEDAFTHSSYANEHPGRKDYEKLEFLGDAVLELAVSDYLYRHFP 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGEL+   +++V  E  S+ A E      I +     K       ++  DV E+   
Sbjct: 68  RLNEGELTRMRSNIVRTEGFSEFAIECGFPEEINLGKGEEKAGARKRKTLLEDVFEAFNG 127

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           AL+LD G+     F+        +  G F   RD KTELQE       V  EY+V   S 
Sbjct: 128 ALFLDQGMPAVQHFL-HLTVYPLIAEGDFNASRDYKTELQERLQVNGPVKIEYQVI--SE 184

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209
            +  P F V + ++G   ++G   +K+
Sbjct: 185 DESKPSFKVQLLVNGEKVSEGQGRNKK 211


>gi|317121789|ref|YP_004101792.1| ribonuclease III [Thermaerobacter marianensis DSM 12885]
 gi|315591769|gb|ADU51065.1| ribonuclease III [Thermaerobacter marianensis DSM 12885]
          Length = 329

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/203 (35%), Positives = 107/203 (52%), Gaps = 9/203 (4%)

Query: 22  LLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
           L  +ALTH+S    + ++     ERLEFLGD +L L ++  +F  +    EGELS    +
Sbjct: 90  LFLEALTHASYRAEHPDTAGADNERLEFLGDAVLNLCVTDHIFRTYPQRPEGELSKLRAA 149

Query: 78  LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137
            V AET +  A+ L L   +R+             S+ AD  E+++AA+YL  G+E A  
Sbjct: 150 TVRAETLAVTAQRLGLGELLRLGRGEEATGGRQRPSVLADAFEAVVAAVYLQEGLEGARA 209

Query: 138 FVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGV-TPEYKVTFRSGPDHDPRFTVVV 193
           F+ +      +R  +S     D KT LQE +  + G+  P Y+V   SGP+HDPR+TV V
Sbjct: 210 FILRTLGDEIRRLAESSGACDDPKTALQELSR-RLGLGEPSYRVIDASGPEHDPRYTVEV 268

Query: 194 EISGLAPAQGMDCSKRAAEQVAA 216
            + G    Q +  SK+ AE+ AA
Sbjct: 269 RVGGRPLGQAVGRSKKVAEREAA 291


>gi|114600835|ref|XP_001157306.1| PREDICTED: ribonuclease III, nuclear isoform 3 [Pan troglodytes]
          Length = 762

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
           + +  E+ IG  F +  LL +A T  ++  +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 494 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 553

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 554 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 612

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174
           IAALY+D  +E   TF++  +  R LK     +   D K++LQ+         K    P 
Sbjct: 613 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 671

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           YK     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 672 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 719



 Score = 56.6 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
           T S I+H+     ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +
Sbjct: 346 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 400

Query: 88  ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135
           A++L+L  F+  +     D+C  S +    A+  E+LI A+YL+G +E A
Sbjct: 401 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 448


>gi|309263205|ref|XP_001473806.2| PREDICTED: ribonuclease 3-like [Mus musculus]
          Length = 1343

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  ++  +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1075 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1134

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1135 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1193

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174
            IAALY+D  +E   TF++  +  R LK     +   D K++LQ+         K    P 
Sbjct: 1194 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1252

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YK     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1253 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1300



 Score = 40.0 bits (92), Expect = 0.23,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 24/122 (19%)

Query: 28   THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS------- 80
            T S I+H+     ERLEFLGD ++  L S  L+  F S +EG L+    ++V        
Sbjct: 918  TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 972

Query: 81   ---AETCSQVARELDLASFIRVSSDLRKDVCSFM----TSIQADVVESLIAALYLDGGIE 133
                E+C+  +  +D       S D R  VC F+     S+        + A+YL+G +E
Sbjct: 973  AKLGESCAGESGVMD-----HDSPDHRGVVCFFVLVCYLSLLLTPASFHLGAVYLEGSLE 1027

Query: 134  VA 135
             A
Sbjct: 1028 EA 1029


>gi|301769069|ref|XP_002919953.1| PREDICTED: LOW QUALITY PROTEIN: ribonuclease 3-like [Ailuropoda
            melanoleuca]
          Length = 1369

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  ++  +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1101 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1160

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1161 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1219

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174
            IAALY+D  +E   TF++  +  R LK     +   D K++LQ+         K    P 
Sbjct: 1220 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1278

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YK     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1279 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1326



 Score = 56.6 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%)

Query: 28   THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
            T S I+H+     ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +
Sbjct: 953  TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 1007

Query: 88   ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135
            A++L+L  F+  +     D+C  S +    A+  E+LI A+YL+G +E A
Sbjct: 1008 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1055


>gi|297294054|ref|XP_002804372.1| PREDICTED: ribonuclease 3 isoform 2 [Macaca mulatta]
 gi|297294056|ref|XP_002804373.1| PREDICTED: ribonuclease 3 isoform 3 [Macaca mulatta]
          Length = 1374

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  ++  +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1106 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1165

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1166 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1224

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174
            IAALY+D  +E   TF++  +  R LK     +   D K++LQ+         K    P 
Sbjct: 1225 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1283

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YK     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1284 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1331



 Score = 56.6 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%)

Query: 28   THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
            T S I+H+     ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +
Sbjct: 958  TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 1012

Query: 88   ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135
            A++L+L  F+  +     D+C  S +    A+  E+LI A+YL+G +E A
Sbjct: 1013 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1060


>gi|114600825|ref|XP_001157646.1| PREDICTED: ribonuclease III, nuclear isoform 8 [Pan troglodytes]
          Length = 1343

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  ++  +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1075 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1134

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1135 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1193

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174
            IAALY+D  +E   TF++  +  R LK     +   D K++LQ+         K    P 
Sbjct: 1194 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1252

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YK     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1253 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1300



 Score = 56.6 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%)

Query: 28   THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
            T S I+H+     ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +
Sbjct: 927  TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 981

Query: 88   ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135
            A++L+L  F+  +     D+C  S +    A+  E+LI A+YL+G +E A
Sbjct: 982  AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1029


>gi|114600823|ref|XP_001157589.1| PREDICTED: ribonuclease III, nuclear isoform 7 [Pan troglodytes]
          Length = 1382

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  ++  +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1114 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1173

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1174 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1232

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174
            IAALY+D  +E   TF++  +  R LK     +   D K++LQ+         K    P 
Sbjct: 1233 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1291

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YK     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1292 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1339



 Score = 55.1 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 34/97 (35%), Positives = 56/97 (57%), Gaps = 4/97 (4%)

Query: 41   ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
            ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+  +
Sbjct: 974  ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYA 1033

Query: 101  SDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135
                 D+C  S +    A+  E+LI A+YL+G +E A
Sbjct: 1034 HG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1068


>gi|4768838|gb|AAD29637.1|AF116910_1 putative ribonuclease III [Homo sapiens]
          Length = 541

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 115/233 (49%), Gaps = 22/233 (9%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALT-------HSSISHSYQESYERLEFLGDRILGLLIST 57
           + +  E+ IG  F +  LL +A T       H ++ H+     +R+EFLGD I+ L+ + 
Sbjct: 273 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHN-----QRMEFLGDSIMQLVATE 327

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF HF    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD
Sbjct: 328 YLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLAD 386

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWA-----HAKF 169
           ++ES IAALY+D  +E   TF++  +  R LK     +   D K++LQ+         K 
Sbjct: 387 LLESFIAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKE 445

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              P YK     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 446 PDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 498



 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
           T S I+H+     ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +
Sbjct: 125 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 179

Query: 88  ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135
           A++L+L  F+  +     D+C  S +    A+  E+LI A+YL+G +E A
Sbjct: 180 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 227


>gi|313897603|ref|ZP_07831145.1| ribonuclease III [Clostridium sp. HGF2]
 gi|312957555|gb|EFR39181.1| ribonuclease III [Clostridium sp. HGF2]
          Length = 227

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 109/217 (50%), Gaps = 6/217 (2%)

Query: 11  KRIGYAFANRSLLEKALTHSSISH---SYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           K    A++++ L+ +AL HSS  +   SY    ERLEF+GD +L L  +  LF       
Sbjct: 9   KNQNIAYSDKKLITQALVHSSYVNEHKSYAHDNERLEFMGDAVLQLWTTKKLFLLEPELS 68

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG+++     LV  E  ++  R+L L  ++ +     K       SI AD+ E+L+ A++
Sbjct: 69  EGQMTTLRAQLVCEEALAEYNRQLGLGKYLMLGVGEEKTGGRQRDSILADMFEALLGAVF 128

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           LD G+E   + +       A+   K  +  D KT+LQE+  +    T  Y+    SGP +
Sbjct: 129 LDQGMEAIDSILSAVVTP-AISRPKSEKVIDYKTKLQEYIQSDSRKTVHYETVNVSGPSN 187

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            P F V+V +  +   +G   SK+ AEQ+AA +  ++
Sbjct: 188 KPEFEVIVMLDDINLGRGKGFSKKRAEQMAAKDAFEK 224


>gi|73953916|ref|XP_868245.1| PREDICTED: similar to Ribonuclease III (RNase III) (Drosha) (p241)
           isoform 6 [Canis familiaris]
          Length = 635

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 115/233 (49%), Gaps = 22/233 (9%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALT-------HSSISHSYQESYERLEFLGDRILGLLIST 57
           + +  E+ IG  F +  LL +A T       H ++ H+     +R+EFLGD I+ L+ + 
Sbjct: 367 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHN-----QRMEFLGDSIMQLVATE 421

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF HF    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD
Sbjct: 422 YLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLAD 480

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWA-----HAKF 169
           ++ES IAALY+D  +E   TF++  +  R LK     +   D K++LQ+         K 
Sbjct: 481 LLESFIAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKE 539

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              P YK     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 540 PDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 592



 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
           T S I+H+     ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +
Sbjct: 219 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 273

Query: 88  ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135
           A++L+L  F+  +     D+C  S +    A+  E+LI A+YL+G +E A
Sbjct: 274 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 321


>gi|25028532|ref|NP_738586.1| ribonuclease III [Corynebacterium efficiens YS-314]
 gi|23493817|dbj|BAC18786.1| putative ribonuclease III [Corynebacterium efficiens YS-314]
          Length = 255

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/218 (33%), Positives = 111/218 (50%), Gaps = 6/218 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLF 60
           A+ ++ L +R+G    +R LL  ALTH S ++      + ERLEFLGD +LGL ++  L+
Sbjct: 28  AVNHADLLERLGVDI-DRDLLVLALTHRSFANENGMLPNNERLEFLGDAVLGLAVANRLY 86

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             + S+ E ++S    S+VS    + +ARE++L  FI +             SI AD  E
Sbjct: 87  ELYPSSPESDISKMRASIVSRYGLADIAREINLGEFILLGKGELLTEGRSKDSILADTTE 146

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +L+ A++   G EVA   V   +  +     +    +D KT LQE    +     EY+ T
Sbjct: 147 ALLGAIFRQHGYEVARDVVLTLFHHKINHASAKGIHQDWKTTLQEELAQRKKPMVEYQTT 206

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
              GPDHD  FT VV +  +   +G   +K+ AEQ AA
Sbjct: 207 -SVGPDHDLLFTAVVYLGDVEMGRGEGPNKKLAEQEAA 243


>gi|259507587|ref|ZP_05750487.1| ribonuclease III [Corynebacterium efficiens YS-314]
 gi|90101620|sp|Q8FP16|RNC_COREF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|259164766|gb|EEW49320.1| ribonuclease III [Corynebacterium efficiens YS-314]
          Length = 247

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/218 (33%), Positives = 111/218 (50%), Gaps = 6/218 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLF 60
           A+ ++ L +R+G    +R LL  ALTH S ++      + ERLEFLGD +LGL ++  L+
Sbjct: 20  AVNHADLLERLGVDI-DRDLLVLALTHRSFANENGMLPNNERLEFLGDAVLGLAVANRLY 78

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             + S+ E ++S    S+VS    + +ARE++L  FI +             SI AD  E
Sbjct: 79  ELYPSSPESDISKMRASIVSRYGLADIAREINLGEFILLGKGELLTEGRSKDSILADTTE 138

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178
           +L+ A++   G EVA   V   +  +   +      +D KT LQE    +     EY+ T
Sbjct: 139 ALLGAIFRQHGYEVARDVVLTLFHHKINHASAKGIHQDWKTTLQEELAQRKKPMVEYQTT 198

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
              GPDHD  FT VV +  +   +G   +K+ AEQ AA
Sbjct: 199 -SVGPDHDLLFTAVVYLGDVEMGRGEGPNKKLAEQEAA 235


>gi|15827877|ref|NP_302140.1| ribonuclease III [Mycobacterium leprae TN]
 gi|221230354|ref|YP_002503770.1| ribonuclease III [Mycobacterium leprae Br4923]
 gi|7531192|sp|O69469|RNC_MYCLE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|3150224|emb|CAA19196.1| ribonuclease III [Mycobacterium leprae]
 gi|13093430|emb|CAC30612.1| RNAse III [Mycobacterium leprae]
 gi|219933461|emb|CAR71754.1| RNAse III [Mycobacterium leprae Br4923]
          Length = 238

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/213 (37%), Positives = 105/213 (49%), Gaps = 20/213 (9%)

Query: 22  LLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL  ALTH S +  H    + ERLEFLGD +L L I+  LF+      EG+L+    S+V
Sbjct: 20  LLSLALTHRSYAYEHGGLPTNERLEFLGDAVLSLTITDELFHRHPDRSEGDLAKLRASVV 79

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSF---MTSIQADVVESLIAALYLDGGIEVA- 135
           + +  + VAR L            R +  +     +SI AD +ESL+ A+YL  GIEVA 
Sbjct: 80  NTQALAYVARNLSDGGLGVYLLLGRGETNTGGADKSSILADGMESLLGAIYLHHGIEVAR 139

Query: 136 -------GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
                  GT +D       L +G    D KT LQE   A+    P Y VT  +GPDHD  
Sbjct: 140 QVILRLFGTLLD---AAPTLGAG---LDWKTSLQELTAARGMGVPSYVVT-STGPDHDKE 192

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           FT VV +       G+  SK+ AEQ AA+   K
Sbjct: 193 FTAVVVVMDTEYGSGIGHSKKEAEQKAASAAWK 225


>gi|293376124|ref|ZP_06622372.1| ribonuclease III [Turicibacter sanguinis PC909]
 gi|325841637|ref|ZP_08167414.1| ribonuclease III [Turicibacter sp. HGF1]
 gi|292645251|gb|EFF63313.1| ribonuclease III [Turicibacter sanguinis PC909]
 gi|325489915|gb|EGC92263.1| ribonuclease III [Turicibacter sp. HGF1]
          Length = 236

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/198 (31%), Positives = 100/198 (50%), Gaps = 7/198 (3%)

Query: 25  KALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
           +A THSS  + ++    E  ERLE+LGD +L L +S  LFN   S  EGE++     LV 
Sbjct: 26  QAFTHSSYVNEHRHLKIEDNERLEYLGDAVLELTVSNYLFNLKPSLSEGEMTKIRAQLVC 85

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140
             +    AR L+L   + +             ++ AD  E+ + A+YLD G++   +FV 
Sbjct: 86  EPSLESYARNLNLGKLMLLGRGEENSGGRERPTVLADAFEAFVGAMYLDLGMDTVYSFVH 145

Query: 141 KYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
           +    +A + G+  +  D K+ LQE   A      EY++   +GP H+  F  +V + G+
Sbjct: 146 EII-HKAYQQGEVTQVFDYKSTLQELVQADSKKAIEYRIISETGPAHNRSFEAIVLLDGI 204

Query: 199 APAQGMDCSKRAAEQVAA 216
              +G+  +K+ AEQ AA
Sbjct: 205 TLGRGIGKTKKEAEQQAA 222


>gi|30263852|ref|NP_846229.1| ribonuclease III [Bacillus anthracis str. Ames]
 gi|47529278|ref|YP_020627.1| ribonuclease III [Bacillus anthracis str. 'Ames Ancestor']
 gi|49186699|ref|YP_029951.1| ribonuclease III [Bacillus anthracis str. Sterne]
 gi|49478414|ref|YP_037910.1| ribonuclease III [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|165873286|ref|ZP_02217894.1| ribonuclease III [Bacillus anthracis str. A0488]
 gi|167636662|ref|ZP_02394952.1| ribonuclease III [Bacillus anthracis str. A0442]
 gi|167642023|ref|ZP_02400254.1| ribonuclease III [Bacillus anthracis str. A0193]
 gi|170689645|ref|ZP_02880826.1| ribonuclease III [Bacillus anthracis str. A0465]
 gi|177655964|ref|ZP_02937116.1| ribonuclease III [Bacillus anthracis str. A0174]
 gi|190565836|ref|ZP_03018755.1| ribonuclease III [Bacillus anthracis Tsiankovskii-I]
 gi|196035867|ref|ZP_03103269.1| ribonuclease III [Bacillus cereus W]
 gi|196042325|ref|ZP_03109601.1| ribonuclease III [Bacillus cereus NVH0597-99]
 gi|196047446|ref|ZP_03114658.1| ribonuclease III [Bacillus cereus 03BB108]
 gi|218904979|ref|YP_002452813.1| ribonuclease III [Bacillus cereus AH820]
 gi|225865830|ref|YP_002751208.1| ribonuclease III [Bacillus cereus 03BB102]
 gi|227813243|ref|YP_002813252.1| ribonuclease III [Bacillus anthracis str. CDC 684]
 gi|228916486|ref|ZP_04080052.1| Ribonuclease 3 [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228928897|ref|ZP_04091929.1| Ribonuclease 3 [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|228935163|ref|ZP_04097990.1| Ribonuclease 3 [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228947568|ref|ZP_04109858.1| Ribonuclease 3 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229092891|ref|ZP_04224025.1| Ribonuclease 3 [Bacillus cereus Rock3-42]
 gi|229123363|ref|ZP_04252567.1| Ribonuclease 3 [Bacillus cereus 95/8201]
 gi|229186089|ref|ZP_04313258.1| Ribonuclease 3 [Bacillus cereus BGSC 6E1]
 gi|229599971|ref|YP_002868086.1| ribonuclease III [Bacillus anthracis str. A0248]
 gi|254683443|ref|ZP_05147303.1| ribonuclease III [Bacillus anthracis str. CNEVA-9066]
 gi|254721380|ref|ZP_05183169.1| ribonuclease III [Bacillus anthracis str. A1055]
 gi|254735887|ref|ZP_05193593.1| ribonuclease III [Bacillus anthracis str. Western North America
           USA6153]
 gi|254739520|ref|ZP_05197217.1| ribonuclease III [Bacillus anthracis str. Kruger B]
 gi|254751172|ref|ZP_05203211.1| ribonuclease III [Bacillus anthracis str. Vollum]
 gi|254756720|ref|ZP_05208749.1| ribonuclease III [Bacillus anthracis str. Australia 94]
 gi|38372420|sp|Q81WI8|RNC_BACAN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|81395098|sp|Q6HEW6|RNC_BACHK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226735366|sp|B7JJT6|RNC_BACC0 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807235|sp|C3P5Q0|RNC_BACAA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807236|sp|C3L778|RNC_BACAC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807237|sp|C1EP73|RNC_BACC3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|30258496|gb|AAP27715.1| ribonuclease III [Bacillus anthracis str. Ames]
 gi|47504426|gb|AAT33102.1| ribonuclease III [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180626|gb|AAT56002.1| ribonuclease III [Bacillus anthracis str. Sterne]
 gi|49329970|gb|AAT60616.1| ribonuclease III [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|164710971|gb|EDR16540.1| ribonuclease III [Bacillus anthracis str. A0488]
 gi|167510022|gb|EDR85437.1| ribonuclease III [Bacillus anthracis str. A0193]
 gi|167527913|gb|EDR90729.1| ribonuclease III [Bacillus anthracis str. A0442]
 gi|170666390|gb|EDT17172.1| ribonuclease III [Bacillus anthracis str. A0465]
 gi|172079908|gb|EDT65015.1| ribonuclease III [Bacillus anthracis str. A0174]
 gi|190562755|gb|EDV16721.1| ribonuclease III [Bacillus anthracis Tsiankovskii-I]
 gi|195991516|gb|EDX55482.1| ribonuclease III [Bacillus cereus W]
 gi|196021754|gb|EDX60449.1| ribonuclease III [Bacillus cereus 03BB108]
 gi|196026847|gb|EDX65478.1| ribonuclease III [Bacillus cereus NVH0597-99]
 gi|218539426|gb|ACK91824.1| ribonuclease III [Bacillus cereus AH820]
 gi|225790989|gb|ACO31206.1| ribonuclease III [Bacillus cereus 03BB102]
 gi|227006213|gb|ACP15956.1| ribonuclease III [Bacillus anthracis str. CDC 684]
 gi|228597265|gb|EEK54916.1| Ribonuclease 3 [Bacillus cereus BGSC 6E1]
 gi|228660139|gb|EEL15775.1| Ribonuclease 3 [Bacillus cereus 95/8201]
 gi|228690513|gb|EEL44296.1| Ribonuclease 3 [Bacillus cereus Rock3-42]
 gi|228812088|gb|EEM58419.1| Ribonuclease 3 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228824528|gb|EEM70333.1| Ribonuclease 3 [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228830704|gb|EEM76309.1| Ribonuclease 3 [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|228843065|gb|EEM88147.1| Ribonuclease 3 [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|229264379|gb|ACQ46016.1| ribonuclease III [Bacillus anthracis str. A0248]
          Length = 245

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 111/223 (49%), Gaps = 7/223 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +   +++IG  F +  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 19  FKLFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A EL   S + +             ++ ADV E+
Sbjct: 79  KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179
            I ALYLD G+E    F+ +    + +  G F    D K++LQE          EY++  
Sbjct: 139 FIGALYLDQGLETVWGFLKEIVYPK-INEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQ 197

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             GP H+  F   V ++ +A   G   SK+ AEQ AAAE LK+
Sbjct: 198 EKGPAHNREFVSRVTLNNVALGLGSGKSKKEAEQQAAAEALKK 240


>gi|297675037|ref|XP_002815506.1| PREDICTED: ribonuclease 3-like [Pongo abelii]
          Length = 1374

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  ++  +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1106 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1165

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1166 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1224

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174
            IAALY+D  +E   TF++  +  R LK     +   D K++LQ+         K    P 
Sbjct: 1225 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1283

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YK     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1284 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1331



 Score = 56.6 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%)

Query: 28   THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
            T S I+H+     ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +
Sbjct: 958  TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 1012

Query: 88   ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135
            A++L+L  F+  +     D+C  S +    A+  E+LI A+YL+G +E A
Sbjct: 1013 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1060


>gi|157326505|gb|ABV44384.1| ASL1/DROSHA fusion [Mus musculus]
          Length = 756

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
           + +  E+ IG  F +  LL +A T  ++  +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 488 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 547

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 548 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 606

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWA-----HAKFGVTPE 174
           IAALY+D  +E   TF++  +  R LK     +   D K++LQ+         K    P 
Sbjct: 607 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 665

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           YK     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 666 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 713



 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
           T S I+H+     ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +
Sbjct: 340 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 394

Query: 88  ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135
           A++L+L  F+  +     D+C  S +    A+  E+LI A+YL+G +E A
Sbjct: 395 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 442


>gi|33585614|gb|AAH55696.1| Rnasen protein [Mus musculus]
          Length = 780

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
           + +  E+ IG  F +  LL +A T  ++  +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 512 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 571

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 572 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 630

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174
           IAALY+D  +E   TF++  +  R LK     +   D K++LQ+         K    P 
Sbjct: 631 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 689

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           YK     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 690 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 737



 Score = 56.6 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
           T S I+H+     ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +
Sbjct: 364 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 418

Query: 88  ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135
           A++L+L  F+  +     D+C  S +    A+  E+LI A+YL+G +E A
Sbjct: 419 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 466


>gi|73953922|ref|XP_536514.2| PREDICTED: similar to Ribonuclease III (RNase III) (Drosha) (p241)
            isoform 1 [Canis familiaris]
          Length = 1328

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  ++  +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1060 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1119

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1120 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1178

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174
            IAALY+D  +E   TF++  +  R LK     +   D K++LQ+         K    P 
Sbjct: 1179 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1237

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YK     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1238 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1285



 Score = 56.6 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%)

Query: 28   THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
            T S I+H+     ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +
Sbjct: 912  TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 966

Query: 88   ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135
            A++L+L  F+  +     D+C  S +    A+  E+LI A+YL+G +E A
Sbjct: 967  AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1014


>gi|332251722|ref|XP_003274996.1| PREDICTED: ribonuclease 3-like [Nomascus leucogenys]
          Length = 1331

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  ++  +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1063 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1122

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1123 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1181

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174
            IAALY+D  +E   TF++  +  R LK     +   D K++LQ+         K    P 
Sbjct: 1182 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1240

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YK     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1241 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1288



 Score = 56.6 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%)

Query: 28   THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
            T S I+H+     ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +
Sbjct: 915  TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 969

Query: 88   ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135
            A++L+L  F+  +     D+C  S +    A+  E+LI A+YL+G +E A
Sbjct: 970  AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1017


>gi|149732818|ref|XP_001500764.1| PREDICTED: ribonuclease type III, nuclear isoform 1 [Equus caballus]
          Length = 1374

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  ++  +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1106 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1165

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1166 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1224

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174
            IAALY+D  +E   TF++  +  R LK     +   D K++LQ+         K    P 
Sbjct: 1225 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1283

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YK     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1284 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1331



 Score = 56.6 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%)

Query: 28   THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
            T S I+H+     ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +
Sbjct: 958  TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 1012

Query: 88   ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135
            A++L+L  F+  +     D+C  S +    A+  E+LI A+YL+G +E A
Sbjct: 1013 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1060


>gi|114600815|ref|XP_526954.2| PREDICTED: ribonuclease III, nuclear isoform 11 [Pan troglodytes]
 gi|114600817|ref|XP_001157424.1| PREDICTED: ribonuclease III, nuclear isoform 4 [Pan troglodytes]
 gi|114600819|ref|XP_001157533.1| PREDICTED: ribonuclease III, nuclear isoform 6 [Pan troglodytes]
 gi|332821657|ref|XP_001157472.2| PREDICTED: ribonuclease 3 isoform 5 [Pan troglodytes]
          Length = 1374

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  ++  +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1106 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1165

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1166 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1224

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174
            IAALY+D  +E   TF++  +  R LK     +   D K++LQ+         K    P 
Sbjct: 1225 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1283

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YK     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1284 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1331



 Score = 56.6 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%)

Query: 28   THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
            T S I+H+     ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +
Sbjct: 958  TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 1012

Query: 88   ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135
            A++L+L  F+  +     D+C  S +    A+  E+LI A+YL+G +E A
Sbjct: 1013 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1060


>gi|73953920|ref|XP_868251.1| PREDICTED: similar to Ribonuclease III (RNase III) (Drosha) (p241)
            isoform 8 [Canis familiaris]
          Length = 1297

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  ++  +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1029 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1088

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1089 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1147

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174
            IAALY+D  +E   TF++  +  R LK     +   D K++LQ+         K    P 
Sbjct: 1148 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1206

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YK     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1207 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1254



 Score = 56.6 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
           T S I+H+     ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +
Sbjct: 881 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 935

Query: 88  ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135
           A++L+L  F+  +     D+C  S +    A+  E+LI A+YL+G +E A
Sbjct: 936 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 983


>gi|155030234|ref|NP_037367.3| ribonuclease 3 isoform 1 [Homo sapiens]
 gi|20139357|sp|Q9NRR4|RNC_HUMAN RecName: Full=Ribonuclease 3; AltName: Full=Protein Drosha; AltName:
            Full=Ribonuclease III; Short=RNase III; AltName:
            Full=p241
          Length = 1374

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  ++  +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1106 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1165

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1166 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1224

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174
            IAALY+D  +E   TF++  +  R LK     +   D K++LQ+         K    P 
Sbjct: 1225 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1283

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YK     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1284 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1331



 Score = 56.6 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%)

Query: 28   THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
            T S I+H+     ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +
Sbjct: 958  TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 1012

Query: 88   ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135
            A++L+L  F+  +     D+C  S +    A+  E+LI A+YL+G +E A
Sbjct: 1013 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1060


>gi|326773636|ref|ZP_08232919.1| ribonuclease III [Actinomyces viscosus C505]
 gi|326636866|gb|EGE37769.1| ribonuclease III [Actinomyces viscosus C505]
          Length = 264

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/193 (36%), Positives = 95/193 (49%), Gaps = 7/193 (3%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL+ ALTH S +H      + ERLEFLGD +LG++++  L+       EG+L+    + V
Sbjct: 29  LLDLALTHRSYAHENGGLPTNERLEFLGDSVLGIIVTEYLYRTHPEVPEGQLAKMRAATV 88

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
           S    + VAR+L L  FI++             SI +D VE+LI A YL  G+E   T V
Sbjct: 89  SEPALAAVARDLGLGEFIKLGKGEALSGGRDKDSILSDTVEALIGATYLTHGLEETRTVV 148

Query: 140 DKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
            +    R L S + R    D KT LQE         P Y+VT  +GPDH   FT    + 
Sbjct: 149 TRLVS-RFLDSARTRGAGLDWKTSLQELTAVHQLGNPAYEVTG-TGPDHQRVFTASAIVD 206

Query: 197 GLAPAQGMDCSKR 209
           G    QG   SK+
Sbjct: 207 GEVLGQGTGSSKK 219


>gi|15672784|ref|NP_266958.1| ribonuclease III [Lactococcus lactis subsp. lactis Il1403]
 gi|13878708|sp|Q9CHD0|RNC_LACLA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|12723723|gb|AAK04900.1|AE006313_7 ribonuclease III [Lactococcus lactis subsp. lactis Il1403]
 gi|326406354|gb|ADZ63425.1| ribonuclease III [Lactococcus lactis subsp. lactis CV56]
          Length = 231

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 107/219 (48%), Gaps = 7/219 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
           L+   G  F +  LL+ A THSS ++  +     + ERLEFLGD  L L+IS  L+  + 
Sbjct: 8   LKNDYGLVFNDEDLLKTAFTHSSFTNEERLPKIANNERLEFLGDVALSLVISDYLYRTYP 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGELS   +S+V  E+ +  +R      F+R+     K       +   ++ E+ + 
Sbjct: 68  EKLEGELSKMRSSIVRTESLANFSRSCGFGEFLRLGHGEEKMGGRDRETTLENLFEAFLG 127

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182
           AL++D G++    F+ ++     +K+  + +  D KTELQE        T  YK+    G
Sbjct: 128 ALFIDQGMDEVRKFI-QHVVIPHVKNDDYVKVIDYKTELQEVLQIGGETTISYKILKEEG 186

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           P HD  F   V  +G    +G+  SK+ AEQ AA   +K
Sbjct: 187 PAHDRSFVAAVFNNGKELGRGLGKSKKVAEQKAAENAIK 225


>gi|268319230|ref|YP_003292886.1| ribonuclease III [Lactobacillus johnsonii FI9785]
 gi|262397605|emb|CAX66619.1| ribonuclease III [Lactobacillus johnsonii FI9785]
          Length = 226

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/207 (33%), Positives = 100/207 (48%), Gaps = 7/207 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             L+K+ G  F N  LLE A THSS +  H  ++ YE+LEFLGD +L L +S  L+ HF 
Sbjct: 8   QNLKKKYGIKFNNEKLLENAFTHSSYANEHPGRKDYEKLEFLGDAVLELAVSDYLYRHFP 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGEL+   +++V  E  S+ A E      I +     K       ++  DV E+   
Sbjct: 68  RLNEGELTRMRSNIVRTEGFSEFAIECGFPEEIDLGKGEEKAGARKRKTLLEDVFEAFNG 127

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           AL+LD G+     F+        +  G F   RD KTELQE       V  EY+V   S 
Sbjct: 128 ALFLDQGMPAVQHFL-HLTVYPLIAEGDFNASRDYKTELQERLQVNGPVKIEYQVI--SE 184

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209
            +  P F V + ++G   ++G   +K+
Sbjct: 185 DESKPSFKVQLLVNGEKVSEGQGRNKK 211


>gi|40455575|gb|AAR85911.1| ribonuclease III-like protein [Rattus norvegicus]
          Length = 288

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 115/233 (49%), Gaps = 22/233 (9%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALT-------HSSISHSYQESYERLEFLGDRILGLLIST 57
           + +  E+ IG  F +  LL +A T       H ++ H+     +R+EFLGD I+ L+ + 
Sbjct: 20  KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHN-----QRMEFLGDSIMQLVATE 74

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF HF    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD
Sbjct: 75  YLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLAD 133

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWA-----HAKF 169
           ++ES IAALY+D  +E   TF++  +  R LK     +   D K++LQ+         K 
Sbjct: 134 LLESFIAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKE 192

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              P YK     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 193 PDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 245


>gi|325068495|ref|ZP_08127168.1| ribonuclease III [Actinomyces oris K20]
          Length = 264

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/193 (36%), Positives = 95/193 (49%), Gaps = 7/193 (3%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL+ ALTH S +H      + ERLEFLGD +LG++++  L+       EG+L+    + V
Sbjct: 29  LLDLALTHRSYAHENGGLPTNERLEFLGDSVLGIIVTEYLYRTHPEVPEGQLAKMRAATV 88

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
           S    + VAR+L L  FI++             SI +D VE+LI A YL  G+E   T V
Sbjct: 89  SEPALAAVARDLGLGEFIKLGKGEALSGGRDKDSILSDTVEALIGATYLTHGLEETRTVV 148

Query: 140 DKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
            +    R L S + R    D KT LQE         P Y+VT  +GPDH   FT    + 
Sbjct: 149 TRLVS-RFLDSARTRGAGLDWKTSLQELTAVHQLGNPAYEVTG-TGPDHQRVFTASAIVD 206

Query: 197 GLAPAQGMDCSKR 209
           G    QG   SK+
Sbjct: 207 GEVLGQGTGSSKK 219


>gi|87301736|ref|ZP_01084576.1| putative ribonuclease III [Synechococcus sp. WH 5701]
 gi|87283953|gb|EAQ75907.1| putative ribonuclease III [Synechococcus sp. WH 5701]
          Length = 259

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 106/205 (51%), Gaps = 7/205 (3%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           +E+ALTHSS       ++ERLEFLGD +L L  +  L  H  +   G+ S     LVS  
Sbjct: 45  IEEALTHSSAGRPI--NHERLEFLGDAVLRLAAAEFLERHHRAMDVGQRSALRAQLVSDR 102

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY-LDGGIEVAGTFVDK 141
             +++ +   + + + +      D  +  T I+A++ E+LI  LY   G +E   T++  
Sbjct: 103 WLAELGKRCGIEAMVHLGPVAAGDSAARQT-IRAEICEALIGGLYETTGSLEPVHTWLTP 161

Query: 142 YWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISGL 198
           +W++ A  L +  +R + KT LQEW+ A+    P Y+   RS    DP RF   V++ G 
Sbjct: 162 HWQRSAKELLADPYRHNWKTGLQEWSQAQGLGLPNYRCEERSRRHGDPRRFHCSVDLKGQ 221

Query: 199 APAQGMDCSKRAAEQVAAAEVLKRE 223
              +G   S+R AEQ AA   L+++
Sbjct: 222 PVGEGWGGSRRDAEQQAARSALEQQ 246


>gi|329767729|ref|ZP_08259245.1| ribonuclease III [Gemella haemolysans M341]
 gi|328838830|gb|EGF88424.1| ribonuclease III [Gemella haemolysans M341]
          Length = 237

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 112/225 (49%), Gaps = 9/225 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLLFNH 62
           +TL K+ G+        + A +HSS ++    +   +YERLEFLGD ++ L  S  LF  
Sbjct: 11  NTLNKKYGFNLKFSENFKNAFSHSSYTNEKRIAKHLNYERLEFLGDAVVELTTSEFLFKK 70

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EGEL+    S+V  +T  + A +L L   I +     K       ++ AD+ ES 
Sbjct: 71  FYELPEGELTKLRASIVCEKTLVKYALQLGLDKCIYLGKGEEKMGGRSRAALLADIFESF 130

Query: 123 IAALYLDGGIEVAGTFVDK--YWKQRALKSGKFRRDAKTELQEW-AHAKFGVTPEYKVTF 179
             A+YL+  +EV  TF+    + + + L+   F  D KT LQE+ +  K G   EY V  
Sbjct: 131 TGAMYLESNLEVVKTFLHNTLFTEVQDLEYHSF-VDYKTILQEYISKIKLG-EIEYVVLD 188

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            +GP H   FT  + I G     G   +K+ +EQ++A + L++ G
Sbjct: 189 STGPSHSKTFTSAILIGGKQYGSGTATTKKESEQLSAKQALEKLG 233


>gi|114566311|ref|YP_753465.1| ribonuclease III [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|122318607|sp|Q0AYW0|RNC_SYNWW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|114337246|gb|ABI68094.1| RNAse III [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 233

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 104/209 (49%), Gaps = 5/209 (2%)

Query: 17  FANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
           +++  L+  ALTH S +       + +RLEFLGD +L L+++  L+NH+    EGEL+  
Sbjct: 19  YSSNELITMALTHPSYAQEKNTVANNQRLEFLGDAVLNLVVAEYLYNHYGRKAEGELTKI 78

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
              +V  +  +  AR ++L  ++ +             SI AD VE++I A+YLD G+E 
Sbjct: 79  RAKVVCEDALAIFARNINLGQYLLLGRGEEMSGGRKRKSILADAVEAVIGAIYLDQGLET 138

Query: 135 AGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
              F+ +  ++      SG +  D K++LQE   A+      Y +   SGP H   F   
Sbjct: 139 VQRFIIRQLEELISETASGDY-YDYKSKLQELVQARDKENVSYAIIEESGPAHAKVFVAG 197

Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           V       A G   SK+ AEQ AA +VL+
Sbjct: 198 VYYREQLLATGEGKSKKEAEQKAAQKVLQ 226


>gi|83814847|ref|YP_445467.1| ribonuclease III [Salinibacter ruber DSM 13855]
 gi|83756241|gb|ABC44354.1| ribonuclease III [Salinibacter ruber DSM 13855]
          Length = 248

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 104/220 (47%), Gaps = 6/220 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62
           + +E+ +G    + S   +ALTH S+   +      S ERLEFLGD +L + +  +L++ 
Sbjct: 19  AAIEQLVGRPVDDLSHYRRALTHRSLLRVHPARTFRSNERLEFLGDALLDVFVGEVLYDR 78

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L+     LVS    +  AR L L   + +S +  +       SI AD  E+ 
Sbjct: 79  FPEKDEGALTRLRARLVSERPLATYARGLGLGPHLLMSENAAEGDGRDNPSILADAFEAF 138

Query: 123 IAALYLDGGIEVAGTFV-DKYWKQRALKSGKFRRDA-KTELQEWAHAKFGVTPEYKVTFR 180
           + A+YLD G E A  FV D+      L+    R D  K++L E   A     P Y V   
Sbjct: 139 VGAVYLDLGHEAARGFVQDRVLAPVDLEDVATRDDNYKSQLLEHLQALGRPQPTYHVVEE 198

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            GP HD  FTV V +   A  +G   SK+ AEQ AA   L
Sbjct: 199 KGPSHDKTFTVEVRVGDAAYERGTAGSKQDAEQQAARRTL 238


>gi|27552890|gb|AAH41162.1| RNASEN protein [Homo sapiens]
          Length = 722

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
           + +  E+ IG  F +  LL +A T  ++  +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 454 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 513

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 514 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 572

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174
           IAALY+D  +E   TF++  +  R LK     +   D K++LQ+         K    P 
Sbjct: 573 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 631

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           YK     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 632 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 679



 Score = 56.6 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
           T S I+H+     ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +
Sbjct: 306 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 360

Query: 88  ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135
           A++L+L  F+  +     D+C  S +    A+  E+LI A+YL+G +E A
Sbjct: 361 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 408


>gi|297294058|ref|XP_001085611.2| PREDICTED: ribonuclease 3 isoform 1 [Macaca mulatta]
          Length = 1337

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  ++  +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1069 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1128

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1129 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1187

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174
            IAALY+D  +E   TF++  +  R LK     +   D K++LQ+         K    P 
Sbjct: 1188 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1246

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YK     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1247 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1294



 Score = 56.6 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%)

Query: 28   THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
            T S I+H+     ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +
Sbjct: 921  TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 975

Query: 88   ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135
            A++L+L  F+  +     D+C  S +    A+  E+LI A+YL+G +E A
Sbjct: 976  AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1023


>gi|291395193|ref|XP_002714143.1| PREDICTED: ribonuclease III, nuclear [Oryctolagus cuniculus]
          Length = 1338

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  ++  +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1070 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1129

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1130 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1188

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174
            IAALY+D  +E   TF++  +  R LK     +   D K++LQ+         K    P 
Sbjct: 1189 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1247

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YK     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1248 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1295



 Score = 56.6 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%)

Query: 28   THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
            T S I+H+     ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +
Sbjct: 922  TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 976

Query: 88   ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135
            A++L+L  F+  +     D+C  S +    A+  E+LI A+YL+G +E A
Sbjct: 977  AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1024


>gi|119631172|gb|EAX10767.1| ribonuclease III, nuclear, isoform CRA_a [Homo sapiens]
 gi|119631173|gb|EAX10768.1| ribonuclease III, nuclear, isoform CRA_a [Homo sapiens]
          Length = 1349

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  ++  +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1081 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1140

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1141 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1199

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174
            IAALY+D  +E   TF++  +  R LK     +   D K++LQ+         K    P 
Sbjct: 1200 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1258

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YK     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1259 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1306



 Score = 56.6 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%)

Query: 28   THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
            T S I+H+     ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +
Sbjct: 933  TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 987

Query: 88   ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135
            A++L+L  F+  +     D+C  S +    A+  E+LI A+YL+G +E A
Sbjct: 988  AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1035


>gi|155030236|ref|NP_001093882.1| ribonuclease 3 isoform 2 [Homo sapiens]
 gi|114600827|ref|XP_001157762.1| PREDICTED: ribonuclease 3 isoform 10 [Pan troglodytes]
          Length = 1337

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  ++  +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1069 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1128

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1129 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1187

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174
            IAALY+D  +E   TF++  +  R LK     +   D K++LQ+         K    P 
Sbjct: 1188 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1246

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YK     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1247 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1294



 Score = 56.6 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%)

Query: 28   THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
            T S I+H+     ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +
Sbjct: 921  TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 975

Query: 88   ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135
            A++L+L  F+  +     D+C  S +    A+  E+LI A+YL+G +E A
Sbjct: 976  AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1023


>gi|65321177|ref|ZP_00394136.1| COG0571: dsRNA-specific ribonuclease [Bacillus anthracis str.
           A2012]
 gi|118479071|ref|YP_896222.1| ribonuclease III [Bacillus thuringiensis str. Al Hakam]
 gi|118418296|gb|ABK86715.1| RNAse III [Bacillus thuringiensis str. Al Hakam]
          Length = 262

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 111/223 (49%), Gaps = 7/223 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +   +++IG  F +  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 36  FKLFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 95

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A EL   S + +             ++ ADV E+
Sbjct: 96  KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 155

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179
            I ALYLD G+E    F+ +    + +  G F    D K++LQE          EY++  
Sbjct: 156 FIGALYLDQGLETVWGFLKEIVYPK-INEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQ 214

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             GP H+  F   V ++ +A   G   SK+ AEQ AAAE LK+
Sbjct: 215 EKGPAHNREFVSRVTLNNVALGLGSGKSKKEAEQQAAAEALKK 257


>gi|296194850|ref|XP_002745134.1| PREDICTED: ribonuclease 3 isoform 1 [Callithrix jacchus]
          Length = 1374

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  ++  +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1106 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1165

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1166 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1224

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174
            IAALY+D  +E   TF++  +  R LK     +   D K++LQ+         K    P 
Sbjct: 1225 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1283

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YK     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1284 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1331



 Score = 56.6 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%)

Query: 28   THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
            T S I+H+     ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +
Sbjct: 958  TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 1012

Query: 88   ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135
            A++L+L  F+  +     D+C  S +    A+  E+LI A+YL+G +E A
Sbjct: 1013 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1060


>gi|114600829|ref|XP_001157712.1| PREDICTED: ribonuclease III, nuclear isoform 9 [Pan troglodytes]
          Length = 1306

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  ++  +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1038 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1097

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1098 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1156

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174
            IAALY+D  +E   TF++  +  R LK     +   D K++LQ+         K    P 
Sbjct: 1157 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1215

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YK     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1216 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1263



 Score = 56.6 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
           T S I+H+     ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +
Sbjct: 890 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 944

Query: 88  ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135
           A++L+L  F+  +     D+C  S +    A+  E+LI A+YL+G +E A
Sbjct: 945 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 992


>gi|145593838|ref|YP_001158135.1| ribonuclease III [Salinispora tropica CNB-440]
 gi|145303175|gb|ABP53757.1| RNAse III [Salinispora tropica CNB-440]
          Length = 252

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/198 (34%), Positives = 103/198 (52%), Gaps = 13/198 (6%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE   G A  +  LLE+ALTH S ++      + ERLEFLGD +LG++I+T LF++    
Sbjct: 14  LEAAFGVAL-DPELLERALTHRSYAYENGGLPTNERLEFLGDSVLGVVITTALFHNHPDL 72

Query: 67  KEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            EG+L+    S+V+    ++VAR L    L  ++ +             SI AD +E+L+
Sbjct: 73  PEGQLAKLRASVVNMRALAEVARGLGPTGLGPYLLLGKGEESTGGRDKASILADTLEALL 132

Query: 124 AALYLDGGIEVAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            A+YL+ G+E   T +    D    + A +      D KT LQE   A+    PEY++  
Sbjct: 133 GAIYLESGLETVATVIHRLFDPLMAESAGRGAAL--DWKTSLQELTAAQGLGVPEYRIEG 190

Query: 180 RSGPDHDPRFTVVVEISG 197
            +GPDH   FT  V ++G
Sbjct: 191 -TGPDHLKTFTAWVVVAG 207


>gi|229019045|ref|ZP_04175885.1| Ribonuclease 3 [Bacillus cereus AH1273]
 gi|228742247|gb|EEL92407.1| Ribonuclease 3 [Bacillus cereus AH1273]
          Length = 245

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 111/223 (49%), Gaps = 7/223 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +   ++ IG  F++  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 19  FKVFQEEIGITFSDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A EL   S + +             ++ ADV E+
Sbjct: 79  KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179
            I ALYLD G+E    F+ +    + +  G F    D K++LQE          EY++  
Sbjct: 139 FIGALYLDQGLETVWGFLKEVVYPK-INEGAFSHVMDYKSQLQELIQRDGSGNVEYQILQ 197

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             GP H+  F   V ++ +A   G   SK+ AEQ AAAE LK+
Sbjct: 198 EKGPAHNREFVSRVTLNNVALGLGSGKSKKEAEQQAAAEALKK 240


>gi|223986082|ref|ZP_03636108.1| hypothetical protein HOLDEFILI_03416 [Holdemania filiformis DSM
           12042]
 gi|223961955|gb|EEF66441.1| hypothetical protein HOLDEFILI_03416 [Holdemania filiformis DSM
           12042]
          Length = 247

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 105/218 (48%), Gaps = 5/218 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDS 65
           LE R G    +  L+E+A  HSS  + +++     ERLEF+GD +L L +S  LF     
Sbjct: 7   LEAR-GIHCKDSRLIEQAFVHSSYVNEHKQLKHDNERLEFMGDAVLQLWVSDKLFRLDPP 65

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG ++     LV  E  +  AR+L L SF+++     K       SI AD+ E+++ A
Sbjct: 66  LDEGHMTTFRAQLVCEEALAIYARQLQLNSFLKLGVGEEKTGGRERDSIIADMFEAMLGA 125

Query: 126 LYLDGGIE-VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           LY D G+E +     +      +        D KT+LQE+  +    T  Y+V   +GP 
Sbjct: 126 LYEDSGMEPIDNILTEVITPHLSHPEEPIIVDYKTKLQEYVQSDSRKTVTYEVINTTGPS 185

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           + P F V V++ G+    G   SK+ AEQ      LKR
Sbjct: 186 NKPEFEVQVKLEGIILGTGKGNSKKKAEQKPLRTRLKR 223


>gi|228940937|ref|ZP_04103496.1| Ribonuclease 3 [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228966797|ref|ZP_04127841.1| Ribonuclease 3 [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228792896|gb|EEM40454.1| Ribonuclease 3 [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228818773|gb|EEM64839.1| Ribonuclease 3 [Bacillus thuringiensis serovar berliner ATCC 10792]
          Length = 225

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 110/220 (50%), Gaps = 7/220 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
            +++IG  F +  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF  + 
Sbjct: 2   FQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYP 61

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EGEL+    ++V   +  + A EL   S + +             ++ ADV E+ I 
Sbjct: 62  TMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEAFIG 121

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182
           ALYLD G+E    F+ +    + +  G F    D K++LQE          EY++    G
Sbjct: 122 ALYLDQGLETVWEFLKEIVYPK-INEGAFSHVMDYKSQLQELIQRDGSGNVEYQILQEKG 180

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           P H+  F   V ++ +A   G   SK+ AEQ AAAE LK+
Sbjct: 181 PAHNREFVSRVTLNNVALGLGSGKSKKEAEQQAAAEALKK 220


>gi|311739750|ref|ZP_07713585.1| ribonuclease III [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311305566|gb|EFQ81634.1| ribonuclease III [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 256

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/204 (33%), Positives = 104/204 (50%), Gaps = 7/204 (3%)

Query: 23  LEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
           L  ALTH S ++   +  + ERLEFLGD +LGL +++ L+  + S  E ++S    S+VS
Sbjct: 38  LRLALTHRSFANENGHLPNNERLEFLGDAVLGLSVASQLYITYPSRPESDISKMRASIVS 97

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140
               S +ARE++L   I +    +        SI AD  E++  A+Y + G E A   + 
Sbjct: 98  RYGLSDIAREINLGPHILLGKGEQSTGGRDKDSILADTTEAIFGAIYREHGFETARDVIL 157

Query: 141 KYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197
           + + ++   A  SG+   D KT LQE         P Y  T  +GP+HD  F  V  ++G
Sbjct: 158 RLFAEKIDNATVSGR-HLDWKTTLQELCAELKAPMPVYSAT-STGPEHDQTFNAVATVAG 215

Query: 198 LAPAQGMDCSKRAAEQVAAAEVLK 221
           L    G+  +K+ AEQ AA E  +
Sbjct: 216 LTVGNGVGHNKKLAEQQAAQEACQ 239


>gi|227543196|ref|ZP_03973245.1| ribonuclease III [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227181005|gb|EEI61977.1| ribonuclease III [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 250

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/216 (34%), Positives = 110/216 (50%), Gaps = 18/216 (8%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL  ALTH S ++      + ERLEFLGD +LG  ++  LF  + S+ E  +S     +V
Sbjct: 37  LLRLALTHRSFANENGGLPNNERLEFLGDSVLGCSVAWKLFETYPSSPESVISKMRARIV 96

Query: 80  SAETCSQVARELDLASFI-----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
           S    + +ARE+ L  +I      + +D R+       SI AD  E+L  A++L+ G E 
Sbjct: 97  SRFGLADIAREIGLGKYILLGRGEILTDGREK-----DSILADTTEALFGAIFLEHGFET 151

Query: 135 AGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
           A   +   + ++ +   S     D KT LQE A  +    PEY+ +F +GPDHD  FT  
Sbjct: 152 ARHTILTLFHEKIVHASSDSIHTDWKTLLQERAAERKLPMPEYEASF-TGPDHDRFFTAT 210

Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAE---VLKREGI 225
             I G     G   +K+AAEQ+AA +   VL+ + I
Sbjct: 211 AIIDGKVVGTGQGHNKKAAEQLAAKQAVTVLREQNI 246


>gi|229031479|ref|ZP_04187479.1| Ribonuclease 3 [Bacillus cereus AH1271]
 gi|228729768|gb|EEL80748.1| Ribonuclease 3 [Bacillus cereus AH1271]
          Length = 245

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 111/223 (49%), Gaps = 7/223 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +   ++ IG  F++  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 19  FKVFQEEIGITFSDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A EL   S + +             ++ ADV E+
Sbjct: 79  KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179
            I ALYLD G+E    F+ +    + +  G F    D K++LQE          EY++  
Sbjct: 139 FIGALYLDQGLETVWGFLKEVVYPK-INEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQ 197

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             GP H+  F   V ++ +A   G   SK+ AEQ AAAE LK+
Sbjct: 198 EKGPAHNREFVSRVTLNNVALGLGSGKSKKEAEQQAAAEALKK 240


>gi|297463231|ref|XP_002702571.1| PREDICTED: ribonuclease III, nuclear [Bos taurus]
 gi|297487774|ref|XP_002696435.1| PREDICTED: ribonuclease III, nuclear-like isoform 1 [Bos taurus]
 gi|296475747|gb|DAA17862.1| ribonuclease III, nuclear-like isoform 1 [Bos taurus]
          Length = 1367

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 113/228 (49%), Gaps = 12/228 (5%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E  IG  F +  LL +A T  ++  +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1099 KLTEFEDAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1158

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1159 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1217

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174
            IAALY+D  +E   TF++  +  R LK     +   D K++LQ+         K    P 
Sbjct: 1218 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1276

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YK     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1277 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1324



 Score = 56.6 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%)

Query: 28   THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
            T S I+H+     ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +
Sbjct: 951  TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 1005

Query: 88   ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135
            A++L+L  F+  +     D+C  S +    A+  E+LI A+YL+G +E A
Sbjct: 1006 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1053


>gi|229174515|ref|ZP_04302047.1| Ribonuclease 3 [Bacillus cereus MM3]
 gi|228609075|gb|EEK66365.1| Ribonuclease 3 [Bacillus cereus MM3]
          Length = 245

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 111/223 (49%), Gaps = 7/223 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +   ++ IG  F++  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 19  FKVFQEEIGITFSDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A EL   S + +             ++ ADV E+
Sbjct: 79  KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179
            I ALYLD G+E    F+ +    + +  G F    D K++LQE          EY++  
Sbjct: 139 FIGALYLDQGLETVWGFLKEIVYPK-INEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQ 197

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             GP H+  F   V ++ +A   G   SK+ AEQ AAAE LK+
Sbjct: 198 EKGPAHNREFVSRVTLNNVALGLGSGKSKKEAEQQAAAEALKK 240


>gi|309378209|emb|CBX23153.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 239

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 105/197 (53%), Gaps = 7/197 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F  
Sbjct: 11  HAAIQKKLGYAFRDISLLRQALTHRSC---HTKHNERFEFVGDSILNYTVARMLFDAFPK 67

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 68  LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +  D     A   V   + +R +K   F+   +DAKT LQE   A+    P+Y++  + G
Sbjct: 128 VSFDADFNTAEKVVRHLFSER-VKRADFQNQAKDAKTALQEALQARRFALPKYRIEEQIG 186

Query: 183 PDHDPRFTVVVEISGLA 199
             +D  F +  ++  L 
Sbjct: 187 HANDSMFVISCDLGELG 203


>gi|296194852|ref|XP_002745135.1| PREDICTED: ribonuclease 3 isoform 2 [Callithrix jacchus]
          Length = 1337

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  ++  +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1069 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1128

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1129 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1187

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174
            IAALY+D  +E   TF++  +  R LK     +   D K++LQ+         K    P 
Sbjct: 1188 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1246

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YK     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1247 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1294



 Score = 56.2 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%)

Query: 28   THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
            T S I+H+     ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +
Sbjct: 921  TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 975

Query: 88   ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135
            A++L+L  F+  +     D+C  S +    A+  E+LI A+YL+G +E A
Sbjct: 976  AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1023


>gi|149732820|ref|XP_001500777.1| PREDICTED: ribonuclease type III, nuclear isoform 2 [Equus caballus]
          Length = 1337

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  ++  +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1069 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1128

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1129 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1187

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174
            IAALY+D  +E   TF++  +  R LK     +   D K++LQ+         K    P 
Sbjct: 1188 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1246

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YK     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1247 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1294



 Score = 56.2 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%)

Query: 28   THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
            T S I+H+     ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +
Sbjct: 921  TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 975

Query: 88   ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135
            A++L+L  F+  +     D+C  S +    A+  E+LI A+YL+G +E A
Sbjct: 976  AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1023


>gi|194306545|ref|NP_081075.3| ribonuclease 3 [Mus musculus]
 gi|194328670|ref|NP_001123621.1| ribonuclease 3 [Mus musculus]
 gi|81882947|sp|Q5HZJ0|RNC_MOUSE RecName: Full=Ribonuclease 3; AltName: Full=Protein Drosha; AltName:
            Full=Ribonuclease III; Short=RNase III
 gi|57242920|gb|AAH88999.1| Rnasen protein [Mus musculus]
 gi|74184402|dbj|BAE25729.1| unnamed protein product [Mus musculus]
 gi|74215950|dbj|BAE28629.1| unnamed protein product [Mus musculus]
          Length = 1373

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  ++  +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1105 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1164

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1165 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1223

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174
            IAALY+D  +E   TF++  +  R LK     +   D K++LQ+         K    P 
Sbjct: 1224 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1282

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YK     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1283 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1330



 Score = 56.2 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%)

Query: 28   THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
            T S I+H+     ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +
Sbjct: 957  TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 1011

Query: 88   ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135
            A++L+L  F+  +     D+C  S +    A+  E+LI A+YL+G +E A
Sbjct: 1012 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1059


>gi|255325275|ref|ZP_05366381.1| ribonuclease III [Corynebacterium tuberculostearicum SK141]
 gi|255297840|gb|EET77151.1| ribonuclease III [Corynebacterium tuberculostearicum SK141]
          Length = 256

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/204 (33%), Positives = 104/204 (50%), Gaps = 7/204 (3%)

Query: 23  LEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
           L  ALTH S ++   +  + ERLEFLGD +LGL +++ L+  + S  E ++S    S+VS
Sbjct: 38  LRLALTHRSFANENGHLPNNERLEFLGDAVLGLSVASQLYITYPSRPESDISKMRASIVS 97

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140
               S +ARE++L   I +    +        SI AD  E++  A+Y + G E A   + 
Sbjct: 98  RYGLSDIAREINLGPHILLGKGEQSTGGRDKDSILADTTEAIFGAIYREHGFETARDVIL 157

Query: 141 KYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197
           + + ++   A  SG+   D KT LQE         P Y  T  +GP+HD  F  V  ++G
Sbjct: 158 RLFAEKIDNATVSGR-HLDWKTTLQELCAELKAPMPVYSAT-STGPEHDQTFNAVATVAG 215

Query: 198 LAPAQGMDCSKRAAEQVAAAEVLK 221
           L    G+  +K+ AEQ AA E  +
Sbjct: 216 LTVGNGVGHNKKLAEQQAAQEACQ 239


>gi|15615052|ref|NP_243355.1| ribonuclease III [Bacillus halodurans C-125]
 gi|20139354|sp|Q9KA05|RNC_BACHD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|10175109|dbj|BAB06208.1| ribonuclease III [Bacillus halodurans C-125]
          Length = 263

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 109/223 (48%), Gaps = 11/223 (4%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +  L + +   FAN+ LL +A THSS  + ++    +  ERLEFLGD +L L +S  L+ 
Sbjct: 35  FDELLRTLNLTFANKKLLVQAFTHSSYVNEHRIQSCKDNERLEFLGDAVLELAVSQYLYK 94

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F+   EG+++    S+V   + +Q+A EL     + +             ++ ADV ES
Sbjct: 95  AFEQMSEGDMTKLRASIVCEPSLAQLAEELHFGELVLLGKGEEMTGGRKRPALLADVFES 154

Query: 122 LIAALYLDGGIEVAGTFVDK--YWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177
            + ALYLD G++    F+++  Y K   +  G F    D K++LQE+          Y++
Sbjct: 155 FVGALYLDQGMDAVYLFLERTIYPK---ISEGAFSHMMDFKSQLQEFIQRDNLGHIHYEI 211

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
               GP H+  F   V ++      G   SK+ AEQ AA + L
Sbjct: 212 VQERGPAHNREFVSEVVLNNETLGVGTGRSKKEAEQHAAQQAL 254


>gi|237785779|ref|YP_002906484.1| ribonuclease III [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758691|gb|ACR17941.1| ribonuclease III [Corynebacterium kroppenstedtii DSM 44385]
          Length = 246

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/201 (32%), Positives = 97/201 (48%), Gaps = 5/201 (2%)

Query: 23  LEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
           L  ALTH S ++      + ERLEFLGD +LGL ++  L+  +    E E+S     +V+
Sbjct: 43  LRLALTHRSFANENGMLPNNERLEFLGDAVLGLSVAERLYRDYPDRTESEISKMRAGVVN 102

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140
               + VARE+ L   + +    +        SI AD  E+++ A+YL+ G + A   + 
Sbjct: 103 MYALADVAREIGLGDHVLLGRGEQLTNGKDKNSILADTTEAMLGAIYLEHGFQTAKDVIL 162

Query: 141 KYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
           + +K R  +  +     D KTEL E    +    PEY  T  SGP HDP FT  V + G 
Sbjct: 163 RLFKSRIESAPTVGLHMDWKTELLEKIAGRGLGEPEYNTTI-SGPAHDPHFTSTVSLQGK 221

Query: 199 APAQGMDCSKRAAEQVAAAEV 219
               G   +K+ AE  AA E 
Sbjct: 222 VWGHGEGHTKKEAEHHAAREA 242


>gi|126321160|ref|XP_001375491.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 1388

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  ++  +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1108 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1167

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1168 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1226

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174
            IAALY+D  +E   TF++  +  R LK     +   D K++LQ+         K    P 
Sbjct: 1227 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1285

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YK     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1286 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1333



 Score = 56.2 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%)

Query: 28   THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
            T S I+H+     ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +
Sbjct: 960  TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 1014

Query: 88   ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135
            A++L+L  F+  +     D+C  S +    A+  E+LI A+YL+G +E A
Sbjct: 1015 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1062


>gi|312869965|ref|ZP_07730104.1| ribonuclease III [Lactobacillus oris PB013-T2-3]
 gi|311094550|gb|EFQ52855.1| ribonuclease III [Lactobacillus oris PB013-T2-3]
          Length = 232

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 107/220 (48%), Gaps = 7/220 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSI--SHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
           L K     F++  LL +A T +S    H +Q  + YER+EFLGD +L L++S  ++  + 
Sbjct: 9   LAKEFDIHFSDPRLLAEAFTQASYVNEHPHQNLKFYERIEFLGDAVLELIVSEYIYKRYP 68

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              +G+L+    ++V  ++ S+ A+E     +IR+              +  D+ ES + 
Sbjct: 69  ELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGHGEELAGARQRPGLLCDIFESFVG 128

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182
           ALYLD G      FV +    + L  G F    DAKT LQE+      V  EY +   SG
Sbjct: 129 ALYLDQGRPAVEKFVRRVIFPK-LDMGWFDHAVDAKTSLQEFLQRDGDVLIEYHLLEESG 187

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            +++P F V V  +G   A G   SK+ AE  AA   LK+
Sbjct: 188 TENNPAFHVDVAANGQVIADGQGSSKKQAEMQAAQRALKK 227


>gi|37994704|gb|AAH60265.1| Rnasen protein [Mus musculus]
          Length = 1231

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  ++  +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 963  KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1022

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1023 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1081

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174
            IAALY+D  +E   TF++  +  R LK     +   D K++LQ+         K    P 
Sbjct: 1082 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1140

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YK     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1141 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1188



 Score = 56.2 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
           T S I+H+     ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +
Sbjct: 815 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 869

Query: 88  ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135
           A++L+L  F+  +     D+C  S +    A+  E+LI A+YL+G +E A
Sbjct: 870 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 917


>gi|194676595|ref|XP_591998.4| PREDICTED: ribonuclease III, nuclear isoform 2 [Bos taurus]
 gi|297487776|ref|XP_002696436.1| PREDICTED: ribonuclease III, nuclear-like isoform 2 [Bos taurus]
 gi|296475748|gb|DAA17863.1| ribonuclease III, nuclear-like isoform 2 [Bos taurus]
          Length = 1330

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 113/228 (49%), Gaps = 12/228 (5%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E  IG  F +  LL +A T  ++  +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1062 KLTEFEDAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1121

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1122 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1180

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174
            IAALY+D  +E   TF++  +  R LK     +   D K++LQ+         K    P 
Sbjct: 1181 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1239

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YK     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1240 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1287



 Score = 56.6 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%)

Query: 28   THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
            T S I+H+     ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +
Sbjct: 914  TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 968

Query: 88   ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135
            A++L+L  F+  +     D+C  S +    A+  E+LI A+YL+G +E A
Sbjct: 969  AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1016


>gi|229162785|ref|ZP_04290742.1| Ribonuclease 3 [Bacillus cereus R309803]
 gi|228620667|gb|EEK77536.1| Ribonuclease 3 [Bacillus cereus R309803]
          Length = 245

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 110/223 (49%), Gaps = 7/223 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +   ++ IG  F +  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 19  FKVFQEEIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A EL   S + +             ++ ADV E+
Sbjct: 79  KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179
            I ALYLD G+E    F+ +    + +  G F    D K++LQE          EY++  
Sbjct: 139 FIGALYLDQGLETVWGFLKEVVYPK-INEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQ 197

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             GP H+  F   V ++ +A   G   SK+ AEQ AAAE LK+
Sbjct: 198 EKGPAHNREFVSRVTLNNVALGLGSGKSKKEAEQQAAAEALKK 240


>gi|329947035|ref|ZP_08294447.1| ribonuclease III [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328526846|gb|EGF53859.1| ribonuclease III [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 267

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/194 (35%), Positives = 97/194 (50%), Gaps = 7/194 (3%)

Query: 21  SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            LL+ ALTH S +H      + ERLEFLGD +LG++++  L+    +  EG+L+    + 
Sbjct: 28  GLLDLALTHRSYAHENGGLPTNERLEFLGDSVLGIIVTEYLYRTHATVPEGQLAKMRAAT 87

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138
           VS    + VAR+L L  FI++             SI +D VE+LI A YL  G+E   T 
Sbjct: 88  VSEPALAAVARDLGLGEFIKLGKGEALSGGRDKDSILSDTVEALIGATYLTHGLEETRTV 147

Query: 139 VDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
           V +    R L S + R    D KT LQE   A     P Y+V+  +GPDH   FT    +
Sbjct: 148 VTRLVS-RFLDSARTRGAGLDWKTSLQELTAAHQLGNPGYEVSG-TGPDHQRVFTASAVV 205

Query: 196 SGLAPAQGMDCSKR 209
            G    +G   SK+
Sbjct: 206 DGQVMGRGTGSSKK 219


>gi|119713398|gb|ABL97460.1| ribonuclease III [uncultured marine bacterium HF130_81H07]
          Length = 220

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 116/222 (52%), Gaps = 11/222 (4%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           +  LEK +GY+F  +  L KALTH S S   +E+ E  EFLGD +L L+IS +L   F  
Sbjct: 5   FKKLEKNLGYSFQKKETLVKALTHVSKS---KENNEVFEFLGDSVLNLIISQILVEKFSM 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG LS+  + LVS  T +++A++L+L SFI     L         +I  + +E++  A
Sbjct: 62  DDEGTLSLMRSKLVSRTTLNKIAKKLELDSFIVKGDSLAGQETP--ENILGNSLEAIFGA 119

Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +Y + G+E     ++  + +    L+ G   +++KT LQE+        P Y    +   
Sbjct: 120 VYKESGLEFIQKIIETTFAKEIELLREGNL-KNSKTLLQEYCQKNKFSLPTYNQIEK--K 176

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           ++   F V  ++   + ++G   S + AEQ AAA +LK+ G+
Sbjct: 177 ENIYPFIVTCKLDD-SSSEGFGKSLKLAEQDAAARLLKKIGV 217


>gi|225024664|ref|ZP_03713856.1| hypothetical protein EIKCOROL_01546 [Eikenella corrodens ATCC
           23834]
 gi|224942553|gb|EEG23762.1| hypothetical protein EIKCOROL_01546 [Eikenella corrodens ATCC
           23834]
          Length = 257

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 101/193 (52%), Gaps = 5/193 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L++ +G++F N  L E+ALTH S S    ++ ER EF+GD IL   ++ +LF+ F    E
Sbjct: 25  LQRHLGHSFQNPRLFEQALTHRSYS---AQNNERFEFVGDAILDYSVAKMLFDAFPGYSE 81

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELS    +LV+ +  +++AR + +   + +     K       SI AD VE+L+AA+  
Sbjct: 82  GELSRLRANLVNQDVLAEIARSMGVGDALYLGVGELKSGGFDRPSILADAVEALLAAISF 141

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D     A   V + + +R   +      +D KT LQE   A+    P+Y++  +SG   D
Sbjct: 142 DADFAAAEQTVRRLFARRIANIDLSNQGKDPKTLLQEALQARRLPLPKYRIEHQSGEGCD 201

Query: 187 PRFTVVVEISGLA 199
            RF +  ++  LA
Sbjct: 202 ARFDIACDLGELA 214


>gi|295693172|ref|YP_003601782.1| ribonuclease iii [Lactobacillus crispatus ST1]
 gi|295031278|emb|CBL50757.1| Ribonuclease III [Lactobacillus crispatus ST1]
          Length = 229

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 108/221 (48%), Gaps = 11/221 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFD 64
           L+      F +  LLE+A THSS S+ +       YE+LEFLGD +L L +S  ++ H+ 
Sbjct: 10  LKDEYNIVFNDEKLLEEAFTHSSYSNEHPNDGIRDYEKLEFLGDAVLELAVSNYVYLHYP 69

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGEL+   +++V  E  S+ A E      I + +   K       ++  DV E+   
Sbjct: 70  KLNEGELTRLRSNIVRTEGFSEFAIECGFQDEIHLGNGEEKAGARHRKTLLEDVFEAFNG 129

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           AL+LD G+     F+        +  G+F   RD KT+LQE       V  EY V   S 
Sbjct: 130 ALFLDQGMPAVEHFL-HLTVYPLIDKGEFDDSRDYKTDLQEVLQQDGPVNIEYTVISESQ 188

Query: 183 -PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            P H   F V ++I+G   ++G   +K+AAEQ AA   L++
Sbjct: 189 LPSH---FVVELKINGKVESKGEGHNKKAAEQQAAKVALQK 226


>gi|52141634|ref|YP_085190.1| ribonuclease III [Bacillus cereus E33L]
 gi|81686565|sp|Q636H7|RNC_BACCZ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|51975103|gb|AAU16653.1| ribonuclease III [Bacillus cereus E33L]
          Length = 245

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 110/223 (49%), Gaps = 7/223 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +   +++IG  F +  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 19  FKVFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A EL     + +             ++ ADV E+
Sbjct: 79  KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGGLVLLGKGEEMTGGRERPALLADVFEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179
            I ALYLD G+E    F+ +    + +  G F    D K++LQE          EY++  
Sbjct: 139 FIGALYLDQGLETVWGFLKEIVYPK-INEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQ 197

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             GP H+  F   V ++ +A   G   SK+ AEQ AAAE LK+
Sbjct: 198 EKGPAHNREFVSRVTLNNVALGLGSGKSKKEAEQQAAAEALKK 240


>gi|119631174|gb|EAX10769.1| ribonuclease III, nuclear, isoform CRA_b [Homo sapiens]
          Length = 1120

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  ++  +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 852  KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 911

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 912  FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 970

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174
            IAALY+D  +E   TF++  +  R LK     +   D K++LQ+         K    P 
Sbjct: 971  IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1029

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YK     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1030 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1077



 Score = 56.2 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
           T S I+H+     ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +
Sbjct: 704 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 758

Query: 88  ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135
           A++L+L  F+  +     D+C  S +    A+  E+LI A+YL+G +E A
Sbjct: 759 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 806


>gi|160903376|ref|YP_001568957.1| ribonuclease III [Petrotoga mobilis SJ95]
 gi|160361020|gb|ABX32634.1| Ribonuclease III [Petrotoga mobilis SJ95]
          Length = 253

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/205 (35%), Positives = 108/205 (52%), Gaps = 11/205 (5%)

Query: 21  SLLEKALTHSSISHSYQ------ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
           S+L +AL H S     +      +S ERLEFLGD +L L+IS  L+N++  + EGE+S +
Sbjct: 33  SVLFEALCHKSYVFDNENIQRKLDSNERLEFLGDAVLELVISEFLYNNYHLS-EGEMS-K 90

Query: 75  FNSLVSAETC-SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
             +++ +E   ++VA +L L  FI +S    K       SI +D +E+L A +YL  G E
Sbjct: 91  ARAIIGSEIILAEVALKLRLDDFIFLSKGEDKQGGRTKKSILSDTMEALFACIYLSCGYE 150

Query: 134 VAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
            A  ++ K  K+    +  G    D KT+LQE    K    PEY +   SGP H  R+ V
Sbjct: 151 KAKKYIIKNMKEYIENAVEGNIFLDYKTKLQELTQEKTKKLPEYVLLSASGPSHMKRYKV 210

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAA 216
            V++       G   SK+ AEQ+AA
Sbjct: 211 AVKLDDEILGIGEGFSKKFAEQLAA 235


>gi|312871483|ref|ZP_07731577.1| ribonuclease III [Lactobacillus iners LEAF 3008A-a]
 gi|311093003|gb|EFQ51353.1| ribonuclease III [Lactobacillus iners LEAF 3008A-a]
          Length = 189

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/175 (35%), Positives = 92/175 (52%), Gaps = 5/175 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
           + L+++    F N  LLE+ALTHSS S+ +Q  ++YE+LEFLGD +L L IS  L+ HF 
Sbjct: 8   NELQEKYQIKFNNEQLLEQALTHSSYSNEHQGCKNYEKLEFLGDAVLELAISDYLYRHFP 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EGEL+   +++V  E  SQ A E   +  +++     K       ++  DV E+   
Sbjct: 68  NMNEGELTRMRSNIVRTEGFSQFATECGFSREVKLGKGEEKSGSRTRHTLLEDVFEAFNG 127

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177
           AL+LD G+     F+        +  G F   RD KTELQE       +  +YKV
Sbjct: 128 ALFLDQGMPAVQHFL-HLTVYPLIAEGDFDSSRDYKTELQEKLQVNGAIDIQYKV 181


>gi|257870561|ref|ZP_05650214.1| ribonuclease III [Enterococcus gallinarum EG2]
 gi|257804725|gb|EEV33547.1| ribonuclease III [Enterococcus gallinarum EG2]
          Length = 230

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 109/226 (48%), Gaps = 7/226 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY----ERLEFLGDRILGLLIS 56
           M+    + L++  G  F +  LLE+A THSS  + ++  +    ERLEFLGD +L L++S
Sbjct: 1   MNTQLMNELKEDYGIVFHDVDLLEQAFTHSSYVNEHRNLHLSDNERLEFLGDAVLELIVS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+       EG+L+    ++V  ++ S  A++     +IR+             S+  
Sbjct: 61  RYLYRELPDLPEGKLTKLRAAIVREDSLSMFAKDCRFDQYIRLGKGEENSGGRKRPSLLC 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D+ E+ + ALYLD G+E    F+      + +K+G F    D KT LQE       V+  
Sbjct: 121 DLFEAFLGALYLDQGLESVDGFLTAVVFPK-VKAGAFSHEMDHKTRLQEVLQRSGDVSIN 179

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           Y++T   GP H+  F   V    +   +G   SK+ +EQ AA   L
Sbjct: 180 YRLTKEEGPAHERIFWTEVYCDDVLIGEGQGKSKKLSEQAAAENAL 225


>gi|320533365|ref|ZP_08034057.1| ribonuclease III [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320134435|gb|EFW26691.1| ribonuclease III [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 264

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/193 (36%), Positives = 95/193 (49%), Gaps = 7/193 (3%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL+ ALTH S +H      + ERLEFLGD +LG++++  L+       EG+L+    + V
Sbjct: 29  LLDLALTHRSYAHENGGLPTNERLEFLGDSVLGIIVTEYLYRTHSEVPEGQLAKMRAATV 88

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
           S    + VAR+L L  FI++             SI +D VE+LI A YL  G+E   T V
Sbjct: 89  SEPALAAVARDLGLGEFIKLGKGEALSGGRDKDSILSDTVEALIGATYLTHGLEETRTVV 148

Query: 140 DKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
            +    R L S + R    D KT LQE A       P Y+V   +GPDH   FT    + 
Sbjct: 149 TRLV-SRFLDSARTRGAGLDWKTSLQELAAVHQLGNPVYEVAG-TGPDHQRVFTASAIVD 206

Query: 197 GLAPAQGMDCSKR 209
           G    QG   SK+
Sbjct: 207 GEVLGQGTGSSKK 219


>gi|269794452|ref|YP_003313907.1| RNAse III [Sanguibacter keddieii DSM 10542]
 gi|269096637|gb|ACZ21073.1| RNAse III [Sanguibacter keddieii DSM 10542]
          Length = 234

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/199 (36%), Positives = 97/199 (48%), Gaps = 5/199 (2%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL  +LTH S +H      + ERLEFLGD +LGL+ +  LF       EG+L+    + V
Sbjct: 27  LLVLSLTHRSFAHEAGGIPTNERLEFLGDAVLGLVAAEALFRRHPDRPEGDLAKMRAASV 86

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
           S    + VAR L L  +I +     +       SI +D VESLI A+YL  G+E A +FV
Sbjct: 87  SQRALAAVARRLSLGDYILLGKGESQTRGFDKDSILSDTVESLIGAVYLSHGLEEARSFV 146

Query: 140 DKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197
            +        +       D KT LQE A  +    PEY  +   GPDH   FT  V I G
Sbjct: 147 HRLLDSTLDAAADLGAGLDWKTSLQEAAAERNVGAPEY-TSEGEGPDHARIFTAHVIIDG 205

Query: 198 LAPAQGMDCSKRAAEQVAA 216
                G   +K+ AEQ+AA
Sbjct: 206 EILGTGQGTAKKHAEQIAA 224


>gi|8886722|gb|AAF80558.1|AF189011_1 ribonuclease III [Homo sapiens]
          Length = 1374

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 113/228 (49%), Gaps = 12/228 (5%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  ++  +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1106 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1165

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1166 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1224

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174
            IAALY D  +E   TF++  +  R LK     +   D K++LQ+         K    P 
Sbjct: 1225 IAALYTDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1283

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YK     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1284 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1331



 Score = 56.6 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%)

Query: 28   THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
            T S I+H+     ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +
Sbjct: 958  TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 1012

Query: 88   ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135
            A++L+L  F+  +     D+C  S +    A+  E+LI A+YL+G +E A
Sbjct: 1013 AKKLELDPFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1060


>gi|237755458|ref|ZP_04584082.1| ribonuclease III [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237692390|gb|EEP61374.1| ribonuclease III [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 247

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/191 (34%), Positives = 102/191 (53%), Gaps = 8/191 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65
           LE+ IGY F ++SLL  A+TH S    Y    + YE LEFLGD ++ L+IS +L   F  
Sbjct: 19  LEEIIGYTFKDKSLLLAAITHRSFVAEYHKKIQDYEVLEFLGDAVISLIISEILIKQFPY 78

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A+EGELS   +++VS    S++AR ++   F+ +S   +    +   S+  DV E++  A
Sbjct: 79  AREGELSQYRSAIVSEAYLSKLARNVNFQDFVLISKGEKYQKGAERESLLCDVFEAVFGA 138

Query: 126 LYLDG--GIEVAGTFVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +Y D    +++     +K +K+     ++     RD K+ LQ      +G  P YK+   
Sbjct: 139 IYTDCQYNLDIPREIFNKNFKEIVINDIQQENLPRDYKSLLQIETQRLYGKIPTYKLISS 198

Query: 181 SGPDHDPRFTV 191
            GP+HD  FTV
Sbjct: 199 EGPEHDKTFTV 209


>gi|125624543|ref|YP_001033026.1| ribonuclease III [Lactococcus lactis subsp. cremoris MG1363]
 gi|189043323|sp|A2RLZ8|RNC_LACLM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|124493351|emb|CAL98325.1| ribonuclease III [Lactococcus lactis subsp. cremoris MG1363]
 gi|300071337|gb|ADJ60737.1| ribonuclease III [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 231

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 107/219 (48%), Gaps = 7/219 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
           L+   G  F +  LL+ A THSS ++  +     + ERLEFLGD  L L+IS  L+  + 
Sbjct: 8   LKNDYGLVFNDEYLLKTAFTHSSFTNEERLPKIANNERLEFLGDVALSLVISDYLYRTYP 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGELS   +S+V  E+ +  +R      F+R+     K       +   ++ E+ + 
Sbjct: 68  EKLEGELSKMRSSIVRTESLANFSRSCGFGEFLRLGHGEEKMGGRDRETTLENLFEAFLG 127

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182
           AL++D G++    F+ ++     +K+  + +  D KTELQE        T  YK+    G
Sbjct: 128 ALFIDQGMDEVRKFI-QHVVIPHVKNDDYVKVIDYKTELQEVLQIGGETTISYKILKEEG 186

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           P HD  F   V  +G    +G+  SK+ AEQ AA   +K
Sbjct: 187 PAHDRSFVAAVFNNGKELGRGLGKSKKVAEQKAAENAIK 225


>gi|314055212|ref|YP_004063550.1| ribonuclease III [Ostreococcus tauri virus 2]
 gi|313575103|emb|CBI70116.1| ribonuclease III [Ostreococcus tauri virus 2]
          Length = 230

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 107/214 (50%), Gaps = 10/214 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65
           +E+ +G    N S  ++A TH S    Y+   ES+E LEF+GD +LG +I+  LF+ ++ 
Sbjct: 8   IEQLVGTKIKNLSFYQRAFTHKSALKEYEQFNESFETLEFMGDSVLGFIITKFLFDRYEE 67

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
            +EG L+     LV +ET + +A +L L + + +    +++  +    I  DV E+L+ A
Sbjct: 68  RQEGFLTKARTKLVRSETLADIALKLGLNNMVLMDEKGQRNQWNNNPKILEDVFEALVGA 127

Query: 126 LYLDGGIEVAGTFVDKYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +Y+D G+  A  FV + +       L +     + K  L  +        PEY+V     
Sbjct: 128 IYMDLGLLHAKEFVLRIYNDPRYINLNAIMIDDNFKDHLMRYCQIMNFQLPEYRVV---- 183

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             H+  F +   I+G    +G   SK+ AEQ+AA
Sbjct: 184 GHHEGIFYIDAYINGQFGGRGQAKSKKQAEQLAA 217


>gi|256824933|ref|YP_003148893.1| RNAse III [Kytococcus sedentarius DSM 20547]
 gi|256688326|gb|ACV06128.1| RNAse III [Kytococcus sedentarius DSM 20547]
          Length = 228

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/195 (34%), Positives = 98/195 (50%), Gaps = 10/195 (5%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLFNHFDSA 66
           LE+ +G    +  LL +A+TH S S+   ++   ERLEFLGD +LGL+++  L+      
Sbjct: 8   LEEVVGVPV-DADLLLQAVTHRSFSYENDDAPHNERLEFLGDSVLGLVVTNHLYRANPDL 66

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGEL+   +++VSA      A  LDL  + R+             SI AD VE++I A+
Sbjct: 67  PEGELAKLRSAVVSARALGGEAGRLDLGDYFRLGRGEENSGGRAKNSILADGVEAVIGAV 126

Query: 127 YLDGGIEVAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           YL  G++ A T V    D+  +Q          D KT LQE   A+    PEY++T  SG
Sbjct: 127 YLSSGLDAATTVVHHLLDELMEQSQTMGAAL--DWKTSLQELGSARGLGLPEYRIT-DSG 183

Query: 183 PDHDPRFTVVVEISG 197
           PDH   F     + G
Sbjct: 184 PDHAKLFEATAVLGG 198


>gi|116511619|ref|YP_808835.1| ribonuclease III [Lactococcus lactis subsp. cremoris SK11]
 gi|122940253|sp|Q030F9|RNC_LACLS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|116107273|gb|ABJ72413.1| RNAse III [Lactococcus lactis subsp. cremoris SK11]
          Length = 231

 Score = 92.8 bits (229), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 106/219 (48%), Gaps = 7/219 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
           L+   G  F +  LL+ A THSS ++  +     + ERLEFLGD  L L+IS  L+  + 
Sbjct: 8   LKNDYGLVFNDEDLLKTAFTHSSFTNEERLPKIANNERLEFLGDVALSLVISDYLYRTYP 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGELS   +S+V  E+ +  +R      F+R+     K       +   ++ E+ + 
Sbjct: 68  EKLEGELSKMRSSIVRTESLANFSRSCGFGEFLRLGHGEEKMGGRDRETTLENLFEAFLG 127

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182
           AL++D G++    F+ ++     +K+  + +  D KTELQE        T  Y +    G
Sbjct: 128 ALFIDQGMDEVRKFI-QHVVIPHVKNDDYVKVIDYKTELQEVLQVGGETTITYNILKEEG 186

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           P HD  F   V  +G    +G+  SK+ AEQ AA   +K
Sbjct: 187 PAHDRSFVAAVYNNGKELGRGLGKSKKVAEQKAAENAIK 225


>gi|159036823|ref|YP_001536076.1| ribonuclease III [Salinispora arenicola CNS-205]
 gi|157915658|gb|ABV97085.1| Ribonuclease III [Salinispora arenicola CNS-205]
          Length = 252

 Score = 92.8 bits (229), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/196 (34%), Positives = 105/196 (53%), Gaps = 9/196 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE   G A  +  LLE+ALTH S ++      + ERLEFLGD +LG++I+T LF++    
Sbjct: 14  LEAAFGVAL-DPELLERALTHRSYAYENGGLPTNERLEFLGDSVLGVVITTALFHNHPDL 72

Query: 67  KEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            EG+L+    S+V+    ++VAR L    L  ++ +             SI AD +E+L+
Sbjct: 73  PEGQLAKLRASVVNMRALAEVARALGPTGLGPYLLLGKGEETTGGRDKASILADTLEALL 132

Query: 124 AALYLDGGIEVAGTFVDKYWKQ-RALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+YL  G++ A T + + +    A  +G+    D KT LQE   A+    PEY++   +
Sbjct: 133 GAIYLQCGLDTAATVIHRLFDPLMADSAGRGAALDWKTSLQELTAAQGLGVPEYRIEG-T 191

Query: 182 GPDHDPRFTVVVEISG 197
           GPDH   FT  V ++G
Sbjct: 192 GPDHLKTFTAWVVVAG 207


>gi|148377702|ref|YP_001256578.1| ribonuclease III (RNase III) [Mycoplasma agalactiae PG2]
 gi|148291748|emb|CAL59137.1| Ribonuclease III (RNase III) [Mycoplasma agalactiae PG2]
          Length = 226

 Score = 92.8 bits (229), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/202 (32%), Positives = 107/202 (52%), Gaps = 8/202 (3%)

Query: 25  KALTH-SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83
           +A TH SS+++S  ++Y+ LEFLGD IL   +S +LFN F    +G+L++  + LV  ++
Sbjct: 23  QAFTHGSSVANSKGKNYQTLEFLGDAILQFYVSAILFNSFKDKNQGQLTLIRSKLVCTDS 82

Query: 84  CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143
            +Q+A  L L  F+ +SS++          + AD+ ESL+AA++LD G+     F+DK  
Sbjct: 83  LNQIADLLKLKDFLVLSSNVVATEVLSSKKVGADIFESLVAAIFLDQGLPKVKDFLDKTL 142

Query: 144 KQ--RALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
               +  K GK   +D+KT LQE   + F     +  T++S    +  F       G   
Sbjct: 143 LPLVKQYKEGKIELKDSKTRLQEHMQS-FSKKTVFYQTYQS---ENNLFKAEAIYEGNVY 198

Query: 201 AQGMDCSKRAAEQVAAAEVLKR 222
             G+  SK  AE+ AA + L +
Sbjct: 199 GSGVGKSKHEAEENAANDALNK 220


>gi|94469421|gb|ABF20199.1| ribonuclease III [Ehrlichia ruminantium]
 gi|94469427|gb|ABF20203.1| ribonuclease III [Ehrlichia ruminantium]
          Length = 145

 Score = 92.8 bits (229), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/137 (36%), Positives = 78/137 (56%)

Query: 86  QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145
           ++A+ ++L  FI +S   R    +  ++   + +E+LI A+YLDGG++ A  F+  +WK 
Sbjct: 3   EIAQSINLGIFIIMSDGERSCGGANNSNNLENALEALIGAIYLDGGLKAAKDFIFLFWKN 62

Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205
            A       +DAKT LQEWA +K    P Y +  +SGPDH+P FTV V I+         
Sbjct: 63  SATHMKVPPQDAKTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRINSHETLHATG 122

Query: 206 CSKRAAEQVAAAEVLKR 222
            +K+ AEQ AA+ +L +
Sbjct: 123 HNKKLAEQKAASLMLAK 139


>gi|189345713|ref|YP_001942242.1| Ribonuclease III [Chlorobium limicola DSM 245]
 gi|189339860|gb|ACD89263.1| Ribonuclease III [Chlorobium limicola DSM 245]
          Length = 273

 Score = 92.8 bits (229), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 114/220 (51%), Gaps = 18/220 (8%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           G A    +L   ALTH S++H       ES +RLEFLGD +L ++IS  L+  F ++ EG
Sbjct: 47  GSAGNEPALYLTALTHRSVTHDASVPGTESNQRLEFLGDAVLDMVISEYLYRSFPNSAEG 106

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRV--SSDLRKDVCSFMTSIQADVVESLIAALY 127
           +LS     +V+ ++ +  A+ + L +++ +  S+D  K   S   S  AD  ESL  A+Y
Sbjct: 107 DLSSNRAKIVNRKSLAGFAQTMGLGNYLIIGESADCNKIRTS--ESALADAFESLTGAIY 164

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFR------RDAKTELQEWAHAKFGVTPEYKVTFRS 181
           LD G++    FV K    + ++   F+       + K+ L E+  +     P Y V  + 
Sbjct: 165 LDKGLDAVRAFVMK----QVIEHVDFKTIVASEHNYKSRLIEYTQSHHIPPPVYTVIAQD 220

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           G +H+  FT+ V  +G +  +G    K+ AEQ+AA E ++
Sbjct: 221 GAEHEKVFTIEVSCAGCSCGRGSAPRKKDAEQLAAKEAVE 260


>gi|312897519|ref|ZP_07756939.1| ribonuclease III [Megasphaera micronuciformis F0359]
 gi|310621371|gb|EFQ04911.1| ribonuclease III [Megasphaera micronuciformis F0359]
          Length = 238

 Score = 92.8 bits (229), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 110/227 (48%), Gaps = 11/227 (4%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY----ERLEFLGDRILGLLISTLL 59
           LR  T    IG  F +  LL++ALTHSS ++  +  +    ERLEFLGD +L +++   L
Sbjct: 9   LRNFTKRLNIG-PFTDWHLLDQALTHSSYTNEDKTHHSMHNERLEFLGDAVLDMVVGEYL 67

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  +    EG L+    S+VS E  + V     +  ++R+             SI AD  
Sbjct: 68  YRRYPDMPEGNLTKARASIVSEEPLACVCAGFHMGDYLRLGKGEALTGGRTRNSIMADAF 127

Query: 120 ESLIAALYLDGGIEVAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
           E+++ A+Y+D     A  F+    ++Y +   ++ G + +D KT  QE          +Y
Sbjct: 128 EAVVGAIYMDCSYSAARDFILTQLERYLQ--LVEKGIYGKDYKTYFQELLQRDGAQDIKY 185

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            +    GPDH+  F + V ++G     G   +K++AEQ AA   L++
Sbjct: 186 HLCHEEGPDHNKTFFMEVIVNGTTMGMGSGKTKKSAEQHAAYAALEK 232


>gi|303231076|ref|ZP_07317816.1| ribonuclease III [Veillonella atypica ACS-049-V-Sch6]
 gi|302514207|gb|EFL56209.1| ribonuclease III [Veillonella atypica ACS-049-V-Sch6]
          Length = 247

 Score = 92.8 bits (229), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/209 (33%), Positives = 104/209 (49%), Gaps = 8/209 (3%)

Query: 21  SLLEKALTHSSISHSYQESY----ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           S+L+ A TH+S ++ ++  +    +RLEFLGD +L L+I   LF  +    EG L+    
Sbjct: 35  SILDCAFTHTSYANEHKSKHIHHNQRLEFLGDAVLDLIIGEYLFTTYPDMSEGNLTKIKA 94

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           + V  ++ + V+R L L  ++ +    +    S   SI AD  ESLI ALY+    +   
Sbjct: 95  ATVCEDSLATVSRTLHLGDYLLLGHGEKSSGGSDRKSILADTFESLIGALYITTDYKTVM 154

Query: 137 TFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
            FV        ++AL+ GK  +D KT LQE+          Y +   SGPDH   F + V
Sbjct: 155 DFVLHQLAPNLKQALE-GKRGKDYKTLLQEFVQRDGDKHIVYSLISESGPDHAKTFMMEV 213

Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            I G+    G   SK+ AEQ AA   L+R
Sbjct: 214 SIDGITYEAGTGKSKKIAEQHAAQLTLER 242


>gi|74318104|ref|YP_315844.1| ribonuclease III [Thiobacillus denitrificans ATCC 25259]
 gi|90101653|sp|Q3SH50|RNC_THIDA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|74057599|gb|AAZ98039.1| ribonuclease III [Thiobacillus denitrificans ATCC 25259]
          Length = 226

 Score = 92.8 bits (229), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/195 (34%), Positives = 98/195 (50%), Gaps = 11/195 (5%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +AL  + L++ +GY F+   LL++ALTH S       + ERLEFLGD +L   ++  L++
Sbjct: 3   NALLDARLQQALGYTFSRSGLLQQALTHRSYGAL---NNERLEFLGDSVLNCSVARALYD 59

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F    EG LS    +LV  ET +++A  L L   +R+     K       SI AD +ES
Sbjct: 60  AFPDLPEGSLSRLRANLVRQETLAEIAGALRLGDSLRLGEGELKSGGFRRPSILADALES 119

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALK-----SGKFRRDAKTELQEWAHAKFGVTPEYK 176
           L  A++LD G + A   V + +     +     SGK   D KT LQE   ++    PEY+
Sbjct: 120 LFGAVFLDAGFDEAQRVVRRLFDPLVAQIDPKASGK---DPKTRLQEILQSRRLPLPEYR 176

Query: 177 VTFRSGPDHDPRFTV 191
           +    G  HD  F V
Sbjct: 177 LVGTEGEAHDQSFIV 191


>gi|313844119|ref|YP_004061782.1| hypothetical protein OlV1_149c [Ostreococcus lucimarinus virus
           OlV1]
 gi|312599504|gb|ADQ91526.1| hypothetical protein OlV1_149c [Ostreococcus lucimarinus virus
           OlV1]
          Length = 230

 Score = 92.8 bits (229), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 106/214 (49%), Gaps = 10/214 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65
           +EK +G    N SL  +A TH S    Y+   ES+E LEF+GD +LG +I+  LF+ ++ 
Sbjct: 8   IEKLVGTKIKNLSLYHRAFTHKSALKEYEQFNESFETLEFMGDSVLGFIITKFLFDRYEE 67

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
            +EG L+     LV +ET + +A ++ L + + +     ++  +    I  DV E+L+ A
Sbjct: 68  RQEGFLTKARTKLVRSETLADIALKMGLNNMVLMDEKGMRNNWNNNPKILEDVFEALVGA 127

Query: 126 LYLDGGIEVAGTFVDKYWKQRA---LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +Y+D G+  A  FV + +       L       + K  L ++        PEY+V     
Sbjct: 128 IYMDLGLLHAKEFVLRIYNDPNFIDLNKIMIDDNFKDHLMKYCQIMNIPLPEYRVV---- 183

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             H+  F +   I+G    +G   SK+ AEQ+AA
Sbjct: 184 GHHEGIFYIDTYINGQFGGRGEAKSKKQAEQLAA 217


>gi|172040468|ref|YP_001800182.1| ribonuclease III [Corynebacterium urealyticum DSM 7109]
 gi|171851772|emb|CAQ04748.1| ribonuclease III [Corynebacterium urealyticum DSM 7109]
          Length = 245

 Score = 92.8 bits (229), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/199 (33%), Positives = 99/199 (49%), Gaps = 5/199 (2%)

Query: 22  LLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           +L  ALTH S +H      + ERLEFLGD +LGL ++  L+  F    E ++S     +V
Sbjct: 37  MLRLALTHRSFAHENDNVPNNERLEFLGDAVLGLSVAEQLYTQFPQRSESDISKMRAGVV 96

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
           +    + +AR L L  +I +     K       SI AD VE+++ A+YL+ G  VA   V
Sbjct: 97  NMYALAGLARNLGLGEYILLGRGEMKTDGQDKDSILADTVEAILGAIYLEHGFAVAKATV 156

Query: 140 DKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197
            + +K    K+       D KT +QE         PEY+VT  SGP+HD  F   +++ G
Sbjct: 157 LRLFKSMIDKAPTVGLTMDWKTTVQERLREHDLPMPEYEVT-SSGPEHDKAFFATLKLDG 215

Query: 198 LAPAQGMDCSKRAAEQVAA 216
               +G   +K+ AE  AA
Sbjct: 216 KERTRGQGRTKKEAEHQAA 234


>gi|15924223|ref|NP_371757.1| ribonuclease III [Staphylococcus aureus subsp. aureus Mu50]
 gi|156979554|ref|YP_001441813.1| ribonuclease III [Staphylococcus aureus subsp. aureus Mu3]
 gi|255006020|ref|ZP_05144621.2| ribonuclease III [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|22654068|sp|Q931T1|RNC_STAAM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043357|sp|A7X1J9|RNC_STAA1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|14247003|dbj|BAB57395.1| RNase III [Staphylococcus aureus subsp. aureus Mu50]
 gi|156721689|dbj|BAF78106.1| RNase III [Staphylococcus aureus subsp. aureus Mu3]
          Length = 243

 Score = 92.8 bits (229), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 107/226 (47%), Gaps = 11/226 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           R+ T    +G+ + N  L ++A +HSS  + +     +  ERLEFLGD +L L +S  LF
Sbjct: 16  RFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLF 75

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           +   +  EG L+    ++V   +    A ++ L   I +     K       S+ +D  E
Sbjct: 76  DKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLISDAFE 135

Query: 121 SLIAALYLDGGIEVAGTFVDK----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           + I ALYLD G+++   F +K    + +Q  L       D KT+ QE+ H +      Y 
Sbjct: 136 AFIGALYLDQGLDIVWKFAEKVIFPHVEQNELLG---VVDFKTQFQEYVHQQNKGDVTYN 192

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +    GP H   FT  V + G A A+G   +K+ +EQ AA    K+
Sbjct: 193 LIKEEGPAHHRLFTSEVILQGEAIAEGKGKTKKESEQRAAKSAYKQ 238


>gi|15926816|ref|NP_374349.1| ribonuclease III [Staphylococcus aureus subsp. aureus N315]
 gi|21282845|ref|NP_645933.1| ribonuclease III [Staphylococcus aureus subsp. aureus MW2]
 gi|49483396|ref|YP_040620.1| ribonuclease III [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49486072|ref|YP_043293.1| ribonuclease III [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57651802|ref|YP_186108.1| ribonuclease III [Staphylococcus aureus subsp. aureus COL]
 gi|87160069|ref|YP_493823.1| ribonuclease III [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88194940|ref|YP_499740.1| ribonuclease III [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|148267724|ref|YP_001246667.1| ribonuclease III [Staphylococcus aureus subsp. aureus JH9]
 gi|150393782|ref|YP_001316457.1| ribonuclease III [Staphylococcus aureus subsp. aureus JH1]
 gi|151221355|ref|YP_001332177.1| ribonuclease III [Staphylococcus aureus subsp. aureus str. Newman]
 gi|161509405|ref|YP_001575064.1| ribonuclease III [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142023|ref|ZP_03566516.1| ribonuclease III [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|253315591|ref|ZP_04838804.1| ribonuclease III [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|253731850|ref|ZP_04866015.1| RNase III [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253733529|ref|ZP_04867694.1| RNase III [Staphylococcus aureus subsp. aureus TCH130]
 gi|257425287|ref|ZP_05601712.1| ribonuclease III [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257427947|ref|ZP_05604345.1| ribonuclease III [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257430580|ref|ZP_05606962.1| ribonuclease III [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433341|ref|ZP_05609699.1| ribonuclease III [Staphylococcus aureus subsp. aureus E1410]
 gi|257436183|ref|ZP_05612230.1| ribonuclease III [Staphylococcus aureus subsp. aureus M876]
 gi|257795711|ref|ZP_05644690.1| ribonuclease III [Staphylococcus aureus A9781]
 gi|258415935|ref|ZP_05682205.1| ribonuclease III [Staphylococcus aureus A9763]
 gi|258419682|ref|ZP_05682649.1| ribonuclease III [Staphylococcus aureus A9719]
 gi|258423926|ref|ZP_05686811.1| ribonuclease III [Staphylococcus aureus A9635]
 gi|258434853|ref|ZP_05688927.1| ribonuclease III [Staphylococcus aureus A9299]
 gi|258444571|ref|ZP_05692900.1| ribonuclease III [Staphylococcus aureus A8115]
 gi|258447596|ref|ZP_05695740.1| ribonuclease III [Staphylococcus aureus A6300]
 gi|258449438|ref|ZP_05697541.1| ribonuclease III [Staphylococcus aureus A6224]
 gi|258454817|ref|ZP_05702781.1| ribonuclease III [Staphylococcus aureus A5937]
 gi|262048131|ref|ZP_06021018.1| RNase III [Staphylococcus aureus D30]
 gi|262051862|ref|ZP_06024078.1| RNase III [Staphylococcus aureus 930918-3]
 gi|269202849|ref|YP_003282118.1| ribonuclease III [Staphylococcus aureus subsp. aureus ED98]
 gi|282892720|ref|ZP_06300955.1| ribonuclease III [Staphylococcus aureus A8117]
 gi|282903787|ref|ZP_06311675.1| ribonuclease III [Staphylococcus aureus subsp. aureus C160]
 gi|282905551|ref|ZP_06313406.1| ribonuclease III [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282908526|ref|ZP_06316356.1| ribonuclease III [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282910805|ref|ZP_06318608.1| ribonuclease III [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914009|ref|ZP_06321796.1| ribonuclease III [Staphylococcus aureus subsp. aureus M899]
 gi|282916483|ref|ZP_06324245.1| ribonuclease III [Staphylococcus aureus subsp. aureus D139]
 gi|282918931|ref|ZP_06326666.1| ribonuclease III [Staphylococcus aureus subsp. aureus C427]
 gi|282920016|ref|ZP_06327745.1| ribonuclease III [Staphylococcus aureus A9765]
 gi|282924054|ref|ZP_06331730.1| ribonuclease III [Staphylococcus aureus subsp. aureus C101]
 gi|282927574|ref|ZP_06335190.1| ribonuclease III [Staphylococcus aureus A10102]
 gi|283770295|ref|ZP_06343187.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus H19]
 gi|283957975|ref|ZP_06375426.1| ribonuclease III [Staphylococcus aureus subsp. aureus A017934/97]
 gi|284024157|ref|ZP_06378555.1| ribonuclease III [Staphylococcus aureus subsp. aureus 132]
 gi|293501041|ref|ZP_06666892.1| ribonuclease III [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510001|ref|ZP_06668709.1| ribonuclease III [Staphylococcus aureus subsp. aureus M809]
 gi|293526589|ref|ZP_06671274.1| ribonuclease III [Staphylococcus aureus subsp. aureus M1015]
 gi|294848227|ref|ZP_06788974.1| ribonuclease III [Staphylococcus aureus A9754]
 gi|295407172|ref|ZP_06816973.1| ribonuclease III [Staphylococcus aureus A8819]
 gi|295427719|ref|ZP_06820351.1| ribonuclease III [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296274790|ref|ZP_06857297.1| ribonuclease III [Staphylococcus aureus subsp. aureus MR1]
 gi|297208123|ref|ZP_06924554.1| ribonuclease III [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297245941|ref|ZP_06929800.1| ribonuclease III [Staphylococcus aureus A8796]
 gi|297591322|ref|ZP_06949960.1| ribonuclease III [Staphylococcus aureus subsp. aureus MN8]
 gi|300912203|ref|ZP_07129646.1| ribonuclease III [Staphylococcus aureus subsp. aureus TCH70]
 gi|304381203|ref|ZP_07363856.1| ribonuclease III [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|54039243|sp|P66669|RNC_STAAW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|54041615|sp|P66668|RNC_STAAN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|56749389|sp|Q6G9Y0|RNC_STAAS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|56749418|sp|Q6GHK2|RNC_STAAR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|73917582|sp|Q5HGJ9|RNC_STAAC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|122539710|sp|Q2FZ50|RNC_STAA8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|123486215|sp|Q2FHK5|RNC_STAA3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043358|sp|A6U152|RNC_STAA2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043359|sp|A5ISB8|RNC_STAA9 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043360|sp|A6QGD3|RNC_STAAE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043361|sp|A8Z3R9|RNC_STAAT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|13701033|dbj|BAB42328.1| RNase III [Staphylococcus aureus subsp. aureus N315]
 gi|21204284|dbj|BAB94981.1| RNase III [Staphylococcus aureus subsp. aureus MW2]
 gi|49241525|emb|CAG40211.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49244515|emb|CAG42944.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57285988|gb|AAW38082.1| ribonuclease III [Staphylococcus aureus subsp. aureus COL]
 gi|87126043|gb|ABD20557.1| ribonuclease III [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202498|gb|ABD30308.1| ribonuclease III, putative [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|147740793|gb|ABQ49091.1| RNAse III [Staphylococcus aureus subsp. aureus JH9]
 gi|149946234|gb|ABR52170.1| Ribonuclease III [Staphylococcus aureus subsp. aureus JH1]
 gi|150374155|dbj|BAF67415.1| ribonuclease III [Staphylococcus aureus subsp. aureus str. Newman]
 gi|160368214|gb|ABX29185.1| ribonuclease III [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253724449|gb|EES93178.1| RNase III [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253728583|gb|EES97312.1| RNase III [Staphylococcus aureus subsp. aureus TCH130]
 gi|257271744|gb|EEV03882.1| ribonuclease III [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257274788|gb|EEV06275.1| ribonuclease III [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278708|gb|EEV09327.1| ribonuclease III [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281434|gb|EEV11571.1| ribonuclease III [Staphylococcus aureus subsp. aureus E1410]
 gi|257284465|gb|EEV14585.1| ribonuclease III [Staphylococcus aureus subsp. aureus M876]
 gi|257789683|gb|EEV28023.1| ribonuclease III [Staphylococcus aureus A9781]
 gi|257839271|gb|EEV63745.1| ribonuclease III [Staphylococcus aureus A9763]
 gi|257844267|gb|EEV68649.1| ribonuclease III [Staphylococcus aureus A9719]
 gi|257845955|gb|EEV69984.1| ribonuclease III [Staphylococcus aureus A9635]
 gi|257849214|gb|EEV73196.1| ribonuclease III [Staphylococcus aureus A9299]
 gi|257850064|gb|EEV74017.1| ribonuclease III [Staphylococcus aureus A8115]
 gi|257853787|gb|EEV76746.1| ribonuclease III [Staphylococcus aureus A6300]
 gi|257857426|gb|EEV80324.1| ribonuclease III [Staphylococcus aureus A6224]
 gi|257863200|gb|EEV85964.1| ribonuclease III [Staphylococcus aureus A5937]
 gi|259160263|gb|EEW45291.1| RNase III [Staphylococcus aureus 930918-3]
 gi|259163697|gb|EEW48252.1| RNase III [Staphylococcus aureus D30]
 gi|262075139|gb|ACY11112.1| ribonuclease III [Staphylococcus aureus subsp. aureus ED98]
 gi|269940725|emb|CBI49106.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282314026|gb|EFB44418.1| ribonuclease III [Staphylococcus aureus subsp. aureus C101]
 gi|282316741|gb|EFB47115.1| ribonuclease III [Staphylococcus aureus subsp. aureus C427]
 gi|282319923|gb|EFB50271.1| ribonuclease III [Staphylococcus aureus subsp. aureus D139]
 gi|282322077|gb|EFB52401.1| ribonuclease III [Staphylococcus aureus subsp. aureus M899]
 gi|282325410|gb|EFB55719.1| ribonuclease III [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327588|gb|EFB57871.1| ribonuclease III [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282330843|gb|EFB60357.1| ribonuclease III [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282590577|gb|EFB95654.1| ribonuclease III [Staphylococcus aureus A10102]
 gi|282594732|gb|EFB99716.1| ribonuclease III [Staphylococcus aureus A9765]
 gi|282595405|gb|EFC00369.1| ribonuclease III [Staphylococcus aureus subsp. aureus C160]
 gi|282764717|gb|EFC04842.1| ribonuclease III [Staphylococcus aureus A8117]
 gi|283460442|gb|EFC07532.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus H19]
 gi|283470446|emb|CAQ49657.1| ribonuclease III [Staphylococcus aureus subsp. aureus ST398]
 gi|283790124|gb|EFC28941.1| ribonuclease III [Staphylococcus aureus subsp. aureus A017934/97]
 gi|285816915|gb|ADC37402.1| Ribonuclease III [Staphylococcus aureus 04-02981]
 gi|290920661|gb|EFD97724.1| ribonuclease III [Staphylococcus aureus subsp. aureus M1015]
 gi|291096046|gb|EFE26307.1| ribonuclease III [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466945|gb|EFF09463.1| ribonuclease III [Staphylococcus aureus subsp. aureus M809]
 gi|294825027|gb|EFG41449.1| ribonuclease III [Staphylococcus aureus A9754]
 gi|294968025|gb|EFG44053.1| ribonuclease III [Staphylococcus aureus A8819]
 gi|295128077|gb|EFG57711.1| ribonuclease III [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296887366|gb|EFH26268.1| ribonuclease III [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297177105|gb|EFH36359.1| ribonuclease III [Staphylococcus aureus A8796]
 gi|297576208|gb|EFH94924.1| ribonuclease III [Staphylococcus aureus subsp. aureus MN8]
 gi|298694526|gb|ADI97748.1| Ribonuclease III [Staphylococcus aureus subsp. aureus ED133]
 gi|300886449|gb|EFK81651.1| ribonuclease III [Staphylococcus aureus subsp. aureus TCH70]
 gi|302332837|gb|ADL23030.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|302751056|gb|ADL65233.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus str.
           JKD6008]
 gi|304340186|gb|EFM06127.1| ribonuclease III [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|312438389|gb|ADQ77460.1| ribonuclease III [Staphylococcus aureus subsp. aureus TCH60]
 gi|312829627|emb|CBX34469.1| ribonuclease III [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315131026|gb|EFT87010.1| ribonuclease III [Staphylococcus aureus subsp. aureus CGS03]
 gi|315194121|gb|EFU24514.1| ribonuclease III [Staphylococcus aureus subsp. aureus CGS00]
 gi|315198472|gb|EFU28801.1| ribonuclease III [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140951|gb|EFW32798.1| ribonuclease III [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320144334|gb|EFW36100.1| ribonuclease III [Staphylococcus aureus subsp. aureus MRSA177]
 gi|323441008|gb|EGA98715.1| ribonuclease III [Staphylococcus aureus O11]
 gi|323442325|gb|EGA99955.1| ribonuclease III [Staphylococcus aureus O46]
 gi|329313902|gb|AEB88315.1| Ribonuclease 3 [Staphylococcus aureus subsp. aureus T0131]
 gi|329724757|gb|EGG61262.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21189]
 gi|329727692|gb|EGG64148.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21172]
 gi|329733624|gb|EGG69952.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21193]
          Length = 243

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 107/226 (47%), Gaps = 11/226 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           R+ T    +G+ + N  L ++A +HSS  + +     +  ERLEFLGD +L L +S  LF
Sbjct: 16  RFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLF 75

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           +   +  EG L+    ++V   +    A ++ L   I +     K       S+ +D  E
Sbjct: 76  DKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLISDAFE 135

Query: 121 SLIAALYLDGGIEVAGTFVDK----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           + I ALYLD G+++   F +K    + +Q  L       D KT+ QE+ H +      Y 
Sbjct: 136 AFIGALYLDQGLDIVWKFAEKVIFPHVEQNELLG---VVDFKTQFQEYVHQQNKGDVTYN 192

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +    GP H   FT  V + G A A+G   +K+ +EQ AA    K+
Sbjct: 193 LIKEEGPAHHRLFTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQ 238


>gi|227495870|ref|ZP_03926181.1| ribonuclease III [Actinomyces urogenitalis DSM 15434]
 gi|226834547|gb|EEH66930.1| ribonuclease III [Actinomyces urogenitalis DSM 15434]
          Length = 276

 Score = 92.4 bits (228), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/201 (35%), Positives = 98/201 (48%), Gaps = 9/201 (4%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL+ ALTH S +H      + ERLEFLGD +L ++++  LF       EG+L+    + V
Sbjct: 35  LLDLALTHRSWAHENGGLPTNERLEFLGDAVLQIIVTEDLFRDHPEVPEGQLAKMRAATV 94

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI----EVA 135
           S    + VAR+L L  FI++             SI +D VE+LI A YL  G+    EV 
Sbjct: 95  SEPALAGVARDLGLGEFIKLGKGEALSGGRDKDSILSDTVEALIGATYLTVGLEPVREVV 154

Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
              V ++  +   +      D KT LQE A      +P Y+VT   GPDH   FT V  +
Sbjct: 155 LRLVSRFLTEAPSRGAGL--DWKTSLQELAAVHRLGSPSYRVT-SVGPDHARVFTAVAVV 211

Query: 196 SGLAPAQGMDCSKRAAEQVAA 216
            G    +G   SK+ AE  AA
Sbjct: 212 DGQERGEGTGSSKKVAEHDAA 232


>gi|89898471|ref|YP_515581.1| ribonuclease III [Chlamydophila felis Fe/C-56]
 gi|123483118|sp|Q253V2|RNC_CHLFF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|89331843|dbj|BAE81436.1| ribonuclease III [Chlamydophila felis Fe/C-56]
          Length = 237

 Score = 92.4 bits (228), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 101/215 (46%), Gaps = 3/215 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISH---SYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           +E ++ + F    LL  ALTH S  +   +  E  ERLEFLGD +L L+++  LF  F S
Sbjct: 10  VEAKLKFTFTQPQLLVTALTHPSYRNETVTITEDSERLEFLGDAVLCLIVTEHLFLLFPS 69

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG LS    +L++A +C Q    L L  ++ +    R       TS  A++ E+++ A
Sbjct: 70  MDEGTLSTARAALINAVSCCQYTDALGLGEYLLIGKGERIQNERGRTSAYANLFEAILGA 129

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           +YLDGG+  A          +         + K  LQ+    +    P Y+ T    P  
Sbjct: 130 VYLDGGLAPARQITVPLLPSKKDILPLMLGNPKNRLQQLTQKQLRTLPVYQSTPWISPQG 189

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            P + + V ++     +G   SK+ AE++AA E L
Sbjct: 190 APGYHIRVIVNDEIWGEGFALSKKEAEKLAAQEAL 224


>gi|258452531|ref|ZP_05700537.1| ribonuclease III [Staphylococcus aureus A5948]
 gi|257859749|gb|EEV82591.1| ribonuclease III [Staphylococcus aureus A5948]
          Length = 243

 Score = 92.4 bits (228), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 107/226 (47%), Gaps = 11/226 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           R+ T    +G+ + N  L ++A +HSS  + +     +  ERLEFLGD +L L +S  LF
Sbjct: 16  RFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLF 75

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           +   +  EG L+    ++V   +    A ++ L   I +     K       S+ +D  E
Sbjct: 76  DKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLISDAFE 135

Query: 121 SLIAALYLDGGIEVAGTFVDK----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           + I ALYLD G+++   F +K    + +Q  L       D KT+ QE+ H +      Y 
Sbjct: 136 AFIGALYLDQGLDIVWKFAEKVIFPHVEQNELLG---VVDFKTQFQEYVHQQNKGDVTYN 192

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +    GP H   FT  V + G A A+G   +K+ +EQ AA    K+
Sbjct: 193 LIKEEGPAHHRLFTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQ 238


>gi|218440872|ref|YP_002379201.1| ribonuclease III [Cyanothece sp. PCC 7424]
 gi|218173600|gb|ACK72333.1| Ribonuclease III [Cyanothece sp. PCC 7424]
          Length = 228

 Score = 92.4 bits (228), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 102/220 (46%), Gaps = 12/220 (5%)

Query: 19  NRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
           N+ L   ALTH S  + +   +E  ERLEFLGD +L  +    L+  +    E +LS   
Sbjct: 9   NQQLWLCALTHRSYVNEHLEIKEHNERLEFLGDAVLAFVAGEFLYQRYPHLSEAQLSRLR 68

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
             LV     ++ A +L +   +R+     KD      ++ +D  E++I A +LD GI+  
Sbjct: 69  ARLVDETQLAKFAVQLGIGQLMRLGKGAIKDGGRENPALLSDTFEAIIGAYFLDAGIDAV 128

Query: 136 GTFVDKYWK---------QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
             FV   ++         Q  + + +   D K   Q+W  A F   PEY +   SGPDH 
Sbjct: 129 REFVRPLFQSVADILMVAQSEILTSEKLLDPKNRFQQWTLANFTQNPEYVIIEESGPDHA 188

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
             FT  V++ G+    G    K+ A + AA   LK+ G++
Sbjct: 189 KEFTAQVKVQGIVYGIGRGRRKQEATKTAAEAALKKIGLF 228


>gi|170709347|ref|ZP_02899762.1| ribonuclease III [Bacillus anthracis str. A0389]
 gi|170125742|gb|EDS94654.1| ribonuclease III [Bacillus anthracis str. A0389]
          Length = 245

 Score = 92.4 bits (228), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 110/223 (49%), Gaps = 7/223 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +   +++IG  F +  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 19  FKLFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A EL   S + +             ++ ADV E+
Sbjct: 79  KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179
            I A YLD G+E    F+ +    + +  G F    D K++LQE          EY++  
Sbjct: 139 FIGAFYLDQGLETVWGFLKEIVYPK-INEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQ 197

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             GP H+  F   V ++ +A   G   SK+ AEQ AAAE LK+
Sbjct: 198 EKGPAHNREFVSRVTLNNVALGLGSGKSKKEAEQQAAAEALKK 240


>gi|94469418|gb|ABF20197.1| ribonuclease III [Ehrlichia ruminantium]
          Length = 145

 Score = 92.4 bits (228), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/137 (36%), Positives = 79/137 (57%)

Query: 86  QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145
           ++A+ ++L  FI +S   R    +  ++   + +E+LI A+YLDGG++ A  F+  +WK 
Sbjct: 3   EIAQSINLGIFIIMSDGERSCGGANNSNNLENALEALIGAIYLDGGLKAAKDFIFLFWKN 62

Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205
            A       +DAKT LQEWA +K    P Y +  +SGPDH+P FTV V I+     +   
Sbjct: 63  SATHMKVPPQDAKTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRINSHETLRATG 122

Query: 206 CSKRAAEQVAAAEVLKR 222
            +K+ AEQ AA+ +L +
Sbjct: 123 HNKKLAEQKAASLMLAK 139


>gi|165973380|ref|NP_001107152.1| drosha, ribonuclease type III [Xenopus (Silurana) tropicalis]
 gi|163916533|gb|AAI57521.1| rnasen protein [Xenopus (Silurana) tropicalis]
          Length = 1325

 Score = 92.4 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 112/228 (49%), Gaps = 12/228 (5%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +  T  ++  +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1061 KLTKFEEAIGVEFTHVRLLARVFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1120

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  F  +++D  K      T   AD++ES 
Sbjct: 1121 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFA-ITNDKTKRPVVLRTKTLADLLESF 1179

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174
            IAALY+D  +E   TF++  +  R LK     +   D K++LQ+         K    P 
Sbjct: 1180 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 1238

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YK     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1239 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1286



 Score = 55.1 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 37/110 (33%), Positives = 62/110 (56%), Gaps = 9/110 (8%)

Query: 28   THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
            T S I+H+     ERLEFLGD ++  L S  L+  F   +EG L+    ++V  +  + +
Sbjct: 913  TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPLLEEGGLATYRTAIVQNQHLAML 967

Query: 88   ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135
            A++L+L  F+  +     D+C  S +    A+  E+L+ A+YL+GG+E A
Sbjct: 968  AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALMGAVYLEGGLEEA 1015


>gi|152976215|ref|YP_001375732.1| ribonuclease III [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|189043291|sp|A7GRH9|RNC_BACCN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|152024967|gb|ABS22737.1| Ribonuclease III [Bacillus cytotoxicus NVH 391-98]
          Length = 245

 Score = 92.4 bits (228), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 111/223 (49%), Gaps = 7/223 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +   ++++G  F N  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 19  FRAFQQKLGITFTNEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A EL   S + +             ++ ADV E+
Sbjct: 79  KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179
            I ALYLD G++    F+ +    + +  G F    D K++LQE          EY++  
Sbjct: 139 FIGALYLDQGLDTVWGFLKEIVYPK-INEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQ 197

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             GP H+  F   V ++ +A   G   SK+ AEQ AAAE L++
Sbjct: 198 EKGPAHNREFVSRVTLNSVALGLGSGKSKKEAEQQAAAEALRK 240


>gi|293446921|ref|ZP_06663343.1| LOW QUALITY PROTEIN: ribonuclease III [Escherichia coli B088]
 gi|291323751|gb|EFE63179.1| LOW QUALITY PROTEIN: ribonuclease III [Escherichia coli B088]
          Length = 182

 Score = 92.4 bits (228), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/181 (34%), Positives = 95/181 (52%), Gaps = 3/181 (1%)

Query: 45  FLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR 104
           FLGD IL  +I+  L++ F    EG++S    +LV   T +++ARE +L   +R+     
Sbjct: 1   FLGDSILSYVIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGEL 60

Query: 105 KDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQ 162
           K       SI AD VE+LI  ++LD  I+     +  +++ R   +  G  ++D KT LQ
Sbjct: 61  KSGGFRRESILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQ 120

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221
           E+   +    P Y V    G  HD  FT+  ++SGL+ P  G   S+R AEQ AA + LK
Sbjct: 121 EYLQGRHLPLPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQALK 180

Query: 222 R 222
           +
Sbjct: 181 K 181


>gi|312879974|ref|ZP_07739774.1| ribonuclease III [Aminomonas paucivorans DSM 12260]
 gi|310783265|gb|EFQ23663.1| ribonuclease III [Aminomonas paucivorans DSM 12260]
          Length = 232

 Score = 92.4 bits (228), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 106/215 (49%), Gaps = 7/215 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           L + + Y F  + LL +ALTH+S ++        ERLEFLGD +L L +S  L+     A
Sbjct: 11  LGRALRYRFHRQELLTEALTHASFANESGLSRCNERLEFLGDAVLELCVSERLYRERPDA 70

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +EG+L+   ++LV A   ++  R   + + + +    R+       ++ AD  E+++ A+
Sbjct: 71  EEGDLTRWRSALVCAPNLARWGRLWGIPACLLLGKGFRRG--GPNENMVADAFEAVLGAI 128

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           YLDGG++     +        L+ GK   D K+ LQE    +    P Y++  +SGP H+
Sbjct: 129 YLDGGLDAVREVLHPLPLPEVLEEGK---DPKSRLQEVLQGQGHPCPRYELREQSGPPHE 185

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             F V V       A G   S R AE+ AA   L+
Sbjct: 186 RWFVVEVSCGEQVLASGEGRSLREAERCAANRALE 220


>gi|240016009|ref|ZP_04722549.1| ribonuclease III [Neisseria gonorrhoeae FA6140]
 gi|240115103|ref|ZP_04729165.1| ribonuclease III [Neisseria gonorrhoeae PID18]
          Length = 239

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 104/197 (52%), Gaps = 7/197 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F  
Sbjct: 11  HTAIQKKLGYAFRDMSLLRRALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 67

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 68  LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSSGFRRPSILADAMEAMFAA 127

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +  D     A   V   + +R ++   F+   +D KT LQE   A+    P+Y++  + G
Sbjct: 128 VSFDADFNTAEKVVRHLFAER-VRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIG 186

Query: 183 PDHDPRFTVVVEISGLA 199
             +D  F +  ++  L 
Sbjct: 187 HANDSMFVISCDLGELG 203


>gi|323359692|ref|YP_004226088.1| dsRNA-specific ribonuclease [Microbacterium testaceum StLB037]
 gi|323276063|dbj|BAJ76208.1| dsRNA-specific ribonuclease [Microbacterium testaceum StLB037]
          Length = 230

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 107/218 (49%), Gaps = 15/218 (6%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
           S L +++G    +  LL  ALTH S ++        ERLEFLGD +LG  ++  LF    
Sbjct: 9   SALTEKLGVDI-DPELLSLALTHRSFAYENGGIPHNERLEFLGDSVLGQAVTVRLFTRHP 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF---MTSIQADVVES 121
              EG+L+ R   +VS    ++VAR + L   +R+    R ++ +      SI AD +E+
Sbjct: 68  DLDEGQLAKRRAGVVSTIALAEVARGIGLGQHVRLG---RGEILTGGHDKDSILADTMEA 124

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVT-PEYKVT 178
           +I A YL  G + A   V +  +       ++    D KT LQE A A+  V  P Y V 
Sbjct: 125 IIGATYLSAGPDAATAMVLRLVEPLMADPARYGAAMDPKTSLQEIA-ARLSVPAPTYSVE 183

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             +GPDHD RFT  V +  +    G   SK+ AE  AA
Sbjct: 184 A-AGPDHDRRFTATVRVGDVV-TTGTGSSKKQAEMAAA 219


>gi|259503531|ref|ZP_05746433.1| ribonuclease III [Lactobacillus antri DSM 16041]
 gi|259168609|gb|EEW53104.1| ribonuclease III [Lactobacillus antri DSM 16041]
          Length = 232

 Score = 92.0 bits (227), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 103/220 (46%), Gaps = 7/220 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFD 64
           L K     F++  LL +A T +S  + +       YER+EFLGD +L L++S  ++  + 
Sbjct: 9   LAKEFDIHFSDPRLLAEAFTQASYVNEHPNQNLKFYERIEFLGDAVLELIVSEYIYKRYP 68

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              +G L+    ++V  ++ S+ A+E     +IR+              +  D+ ES + 
Sbjct: 69  ELPQGRLTRLRAAMVCEDSFSKFAKECHFDQYIRLGHGEELAGARQRPGLLCDIFESFVG 128

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182
           ALYLD G      FV +    + L  G F    DAKT LQE+      V  EY +   SG
Sbjct: 129 ALYLDQGRPAVEKFVQRVIFPK-LDMGWFDHAVDAKTSLQEFLQRDGDVLIEYHLLEESG 187

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            +++P F V V   G   A G   SK+ AE  AA   LK+
Sbjct: 188 TENNPAFHVDVAADGQVIADGQGSSKKQAEMQAAQRALKK 227


>gi|325129784|gb|EGC52592.1| ribonuclease III [Neisseria meningitidis OX99.30304]
 gi|325133799|gb|EGC56455.1| ribonuclease III [Neisseria meningitidis M13399]
 gi|325135722|gb|EGC58334.1| ribonuclease III [Neisseria meningitidis M0579]
 gi|325141941|gb|EGC64381.1| ribonuclease III [Neisseria meningitidis 961-5945]
 gi|325143926|gb|EGC66236.1| ribonuclease III [Neisseria meningitidis M01-240013]
 gi|325197906|gb|ADY93362.1| ribonuclease III [Neisseria meningitidis G2136]
 gi|325202518|gb|ADY97972.1| ribonuclease III [Neisseria meningitidis M01-240149]
 gi|325206470|gb|ADZ01923.1| ribonuclease III [Neisseria meningitidis M04-240196]
 gi|325207732|gb|ADZ03184.1| ribonuclease III [Neisseria meningitidis NZ-05/33]
          Length = 239

 Score = 92.0 bits (227), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 103/197 (52%), Gaps = 7/197 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++KR+GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F  
Sbjct: 11  HAAIQKRLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDTFPK 67

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 68  LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +  D     A   V   +  R ++   F+   +D KT LQE   A+    P+Y++  + G
Sbjct: 128 VSFDADFNTAEKVVRHLFADR-VRCADFQNQAKDGKTALQEALQARRFALPKYRIEEQIG 186

Query: 183 PDHDPRFTVVVEISGLA 199
             +D  F V  ++  L 
Sbjct: 187 HANDSMFVVSCDLGELG 203


>gi|304404216|ref|ZP_07385878.1| ribonuclease III [Paenibacillus curdlanolyticus YK9]
 gi|304347194|gb|EFM13026.1| ribonuclease III [Paenibacillus curdlanolyticus YK9]
          Length = 232

 Score = 92.0 bits (227), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 114/222 (51%), Gaps = 8/222 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
           L++R+   F    LL +A TH+S  + ++    E  ERLEFLGD +L LL+S  LF  + 
Sbjct: 9   LQQRLLIRFRQPRLLRQAFTHTSYVNEHRGKPIEDNERLEFLGDAVLQLLVSEHLFLTYP 68

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EGEL+    S+V   + ++ A  L L + + +     +       ++ AD+ E+ + 
Sbjct: 69  NRPEGELTRMRASIVCEPSLARFADLLGLGACVLLGRGEEQLGGRHRPALLADLFEAFVG 128

Query: 125 ALYLDGGIEVAGTFV-DKYWKQRALKSGKFRRDAKTELQEWA-HAKFGVTPEYKVTFRSG 182
           A+YLD G++    F+ ++ + Q         +D K++LQE A H   G T EY++    G
Sbjct: 129 AVYLDQGLDRVRLFLTERIFPQIEENGSLLVKDFKSKLQEKAQHGTLG-TVEYRIAEERG 187

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA-AEVLKRE 223
           P HD  F V V I       G+  +K+ AEQ +A A  LK E
Sbjct: 188 PAHDREFVVEVRIGDQPYGIGVGRTKKEAEQRSAEAACLKLE 229


>gi|227488592|ref|ZP_03918908.1| ribonuclease III [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227091486|gb|EEI26798.1| ribonuclease III [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 250

 Score = 92.0 bits (227), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 75/217 (34%), Positives = 111/217 (51%), Gaps = 20/217 (9%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL  ALTH S ++      + ERLEFLGD +LG  ++  LF  + S+ E  +S     +V
Sbjct: 37  LLRLALTHRSFANENGGLPNNERLEFLGDSVLGCSVAWKLFETYPSSPESVISKMRARIV 96

Query: 80  SAETCSQVARELDLASFI-----RVSSDLR-KDVCSFMTSIQADVVESLIAALYLDGGIE 133
           S    + +ARE+ L  +I      + +D R KD      SI AD  E++  A++L+ G E
Sbjct: 97  SRFGLADIAREIGLGKYILLGRGEILTDGRDKD------SILADTTEAIFGAIFLEHGFE 150

Query: 134 VAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
            A   +   + ++ +   S     D KT LQE A  +    PEY+ +F +GPDHD  FT 
Sbjct: 151 AARHTILTLFHEKIVHASSDSIHTDWKTLLQERAAERKLPMPEYEASF-TGPDHDRFFTA 209

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAE---VLKREGI 225
              I G     G   +K+AAEQ+AA +   VL+ + I
Sbjct: 210 TAIIDGKVVGTGQGHNKKAAEQLAAKQAVTVLREQNI 246


>gi|227824522|ref|ZP_03989354.1| ribonuclease [Acidaminococcus sp. D21]
 gi|226905021|gb|EEH90939.1| ribonuclease [Acidaminococcus sp. D21]
          Length = 238

 Score = 92.0 bits (227), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 107/220 (48%), Gaps = 13/220 (5%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQESY-----ERLEFLGDRILGLLISTLLFNHFDSA 66
           R+G    + SL++ ALTHSS ++  +E       +RLEFLGD +L L++ST L+  +   
Sbjct: 15  RLGVTMQDLSLMDTALTHSSYAYECKEKVVPEFNQRLEFLGDSVLSLVVSTHLYLAYPEM 74

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG LS     LV  ET +++A++L +  ++ +          +  SI AD  ES++ A 
Sbjct: 75  DEGALSKFRAFLVCEETLAELAQDLAIGDYLLLGRGECHMGGRYNPSILADAFESVMGAY 134

Query: 127 YLDGGIE-----VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           YLD G E     +    +DK  +   L +    RD KT  QE   A+      Y+     
Sbjct: 135 YLDAGYEKVRDLLTRVLIDKIPE---LTADGIDRDYKTRFQELIQAQGQTDIHYEEAGFD 191

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           GP H+  F + V +       G   +K+ AEQ AA E L+
Sbjct: 192 GPPHNRTFFMKVIVGEKTYGTGSGRTKKLAEQRAAREALR 231


>gi|258652105|ref|YP_003201261.1| ribonuclease III [Nakamurella multipartita DSM 44233]
 gi|258555330|gb|ACV78272.1| ribonuclease III [Nakamurella multipartita DSM 44233]
          Length = 249

 Score = 92.0 bits (227), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/195 (35%), Positives = 97/195 (49%), Gaps = 11/195 (5%)

Query: 26  ALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83
           ALTH S +  H    + ERLEFLGD +LG++++  L+      +EG L+    S+V+   
Sbjct: 29  ALTHRSFAYEHGGLPTNERLEFLGDSVLGVVVTETLYRTHPELQEGRLAKLRASVVNMHA 88

Query: 84  CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT-----F 138
            + V R + L   +R+            +SI AD VE++I A+YL  G+EVA       F
Sbjct: 89  LAGVGRTIGLGDQLRLGKGEELTGGRDKSSIVADAVEAVIGAVYLQHGLEVARAVVLRLF 148

Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
            D       L +G    D KT LQE A  +    PEY+V+   GPDH   F   V +SG 
Sbjct: 149 ADLLATAPQLGAGL---DWKTSLQELAAERGLGVPEYRVS-EEGPDHAKVFAARVLLSGS 204

Query: 199 APAQGMDCSKRAAEQ 213
           A   G   +K+ AEQ
Sbjct: 205 ARGTGTGRTKKEAEQ 219


>gi|218259360|ref|ZP_03475110.1| hypothetical protein PRABACTJOHN_00767 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225152|gb|EEC97802.1| hypothetical protein PRABACTJOHN_00767 [Parabacteroides johnsonii
           DSM 18315]
          Length = 286

 Score = 92.0 bits (227), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 117/230 (50%), Gaps = 13/230 (5%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M+   YS+L K +G+   N  L E+A  H S S    +    + ERLEFLGD IL  +++
Sbjct: 15  MNKEPYSSLYKILGFYPDNIHLYEQAFHHKSSSIESSDGRWLNNERLEFLGDAILDAVVA 74

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
            ++FNHF + +EG L+   + +V  +T ++VA EL L   +  S+     V S    +  
Sbjct: 75  DIVFNHFQNKREGFLTNTRSKIVQRDTLNRVAVELGLEKMVVYSA----KVNSHNNYMYG 130

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVT 172
           + +E+LI A+YLD G EV   F+     ++ +      R   + K+ L EW+   K  ++
Sbjct: 131 NALEALIGAIYLDQGYEVCYNFIQNVLIKKYVNLETIARKEVNFKSSLIEWSQKNKLEIS 190

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            +   +F +  D +P F   V +S      G+  SK+ ++Q AA   +K+
Sbjct: 191 FDLIESF-TDNDGNPVFQTGVTLSDTQIGVGIGYSKKESQQSAAKMAIKK 239


>gi|281491298|ref|YP_003353278.1| ribonuclease III [Lactococcus lactis subsp. lactis KF147]
 gi|281375039|gb|ADA64557.1| Ribonuclease III [Lactococcus lactis subsp. lactis KF147]
          Length = 231

 Score = 92.0 bits (227), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 106/219 (48%), Gaps = 7/219 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
           L+   G  F +  LL+   THSS ++  +     + ERLEFLGD  L L+IS  L+  + 
Sbjct: 8   LKNDYGLVFNDEDLLKTVFTHSSFTNEERLPKIANNERLEFLGDVALSLVISDYLYRTYP 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGELS   +S+V  E+ +  +R      F+R+     K       +   ++ E+ + 
Sbjct: 68  EKLEGELSKMRSSIVRTESLANFSRSCGFGEFLRLGHGEEKMGGRDRETTLENLFEAFLG 127

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182
           AL++D G++    F+ ++     +K+  + +  D KTELQE        T  YK+    G
Sbjct: 128 ALFIDQGMDEVRKFI-QHVVIPHVKNDDYVKVIDYKTELQEVLQIGGETTISYKILKEEG 186

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           P HD  F   V  +G    +G+  SK+ AEQ AA   +K
Sbjct: 187 PAHDRSFVAAVFNNGKELGRGLGKSKKVAEQKAAENAIK 225


>gi|227494679|ref|ZP_03924995.1| ribonuclease III [Actinomyces coleocanis DSM 15436]
 gi|226831861|gb|EEH64244.1| ribonuclease III [Actinomyces coleocanis DSM 15436]
          Length = 256

 Score = 92.0 bits (227), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 71/201 (35%), Positives = 101/201 (50%), Gaps = 9/201 (4%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL  ALTH S +      E  ERLEFLGD +L ++++  L+ ++  + E  LS    ++V
Sbjct: 35  LLILALTHRSFAFEVGNIEPNERLEFLGDSVLSIIVTEYLYKNYPQSSEANLSRMRGAIV 94

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
           S +T SQVAR + L  FI +             SI  D+ E++I A YL  G+E     V
Sbjct: 95  SEKTLSQVARNIRLGDFILLGKGENLTGGRDRDSILCDMTEAMIGATYLSHGLEATRRIV 154

Query: 140 DKYWK---QRALKSGKFRRDAKTELQEW-AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
           + + +   +RA++ GK   D KT LQE+ A A  G  P Y+     GPDH   F   V +
Sbjct: 155 EYHLRPFLERAVELGK-SSDYKTTLQEYCAEASLG-EPIYEAE-GFGPDHARYFIATVTV 211

Query: 196 SGLAPAQGMDCSKRAAEQVAA 216
            G     G   SK+ A+  AA
Sbjct: 212 GGELVGHGQASSKKGAKSEAA 232


>gi|301167246|emb|CBW26828.1| Ribonuclease III (RNase III) [Bacteriovorax marinus SJ]
          Length = 261

 Score = 92.0 bits (227), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 116/225 (51%), Gaps = 16/225 (7%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLLFNHF 63
            L++ I + F N +LL +ALTHSS  H      ++SYERLEFLGD +L L+I+ LL   F
Sbjct: 27  NLQRNISHKFKNMALLYEALTHSSFGHECFGDSKKSYERLEFLGDSVLDLIITDLLQEKF 86

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            +  EG+LS    SLV+  +  ++A  L++   + V     K   +  +SI +DV E+++
Sbjct: 87  PAMVEGKLSKLRASLVNEVSLKELASSLEIERAVLVGKGELKAQGNLKSSILSDVFEAVL 146

Query: 124 AALYLDGGIEVAG----TFVDKYWK---QRALKSGKFRR-DAKTELQEWAHAKFGVTPEY 175
            A+Y D  +EV+     + ++ Y K   Q  L   + +  D+K+ LQE   + F   P+Y
Sbjct: 147 GAIYKDSSLEVSKKSFISIIENYEKLSGQIYLDEKRLQEFDSKSRLQEMTMSLFKTLPKY 206

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                S  + +   +V+ +       +G   SK+  EQ  A  ++
Sbjct: 207 SAKELSNGNFEVEASVLDKF----LEKGEFSSKKKGEQKLAKNII 247


>gi|269797766|ref|YP_003311666.1| ribonuclease III [Veillonella parvula DSM 2008]
 gi|282849040|ref|ZP_06258429.1| ribonuclease III [Veillonella parvula ATCC 17745]
 gi|294791672|ref|ZP_06756820.1| ribonuclease III [Veillonella sp. 6_1_27]
 gi|294793530|ref|ZP_06758667.1| ribonuclease III [Veillonella sp. 3_1_44]
 gi|269094395|gb|ACZ24386.1| ribonuclease III [Veillonella parvula DSM 2008]
 gi|282581315|gb|EFB86709.1| ribonuclease III [Veillonella parvula ATCC 17745]
 gi|294455100|gb|EFG23472.1| ribonuclease III [Veillonella sp. 3_1_44]
 gi|294456902|gb|EFG25264.1| ribonuclease III [Veillonella sp. 6_1_27]
          Length = 246

 Score = 92.0 bits (227), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 111/217 (51%), Gaps = 6/217 (2%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQESY----ERLEFLGDRILGLLISTLLFNHFDSAK 67
           R+    ++ S+++ A TH+S ++ ++  +    +RLEFLGD +L L+I   LF  +    
Sbjct: 25  RLDIPVSDISIIDCAFTHTSYANEHKSKHIHHNQRLEFLGDAVLDLIIGEYLFKTYPDMA 84

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG L+    + V  ++ + V+R L L  ++ +    R    +   SI AD  ESLI A+Y
Sbjct: 85  EGNLTKIKAATVCEDSLASVSRSLQLGQYLLLGHGERASGGNDRNSILADTFESLIGAIY 144

Query: 128 LDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           +    + A  FV K+     +++  GK  +D KT LQE+          Y +   SGPDH
Sbjct: 145 ISTDYQTAMAFVLKHLTTYIMQALEGKRGKDYKTLLQEYVQRDGDKHIVYHLLSESGPDH 204

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              F + VEI+G+    G   SK+ AEQ AA   L++
Sbjct: 205 AKTFHMEVEINGVTYEAGSGKSKKIAEQHAAQLTLEK 241


>gi|212695676|ref|ZP_03303804.1| hypothetical protein ANHYDRO_00193 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677349|gb|EEB36956.1| hypothetical protein ANHYDRO_00193 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 228

 Score = 92.0 bits (227), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 108/193 (55%), Gaps = 17/193 (8%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           IGY+F N++L++ ALTHSS  +  ++    S ERLEFLGD IL L++S  L+ +  S  E
Sbjct: 18  IGYSFKNKNLIDVALTHSSYINESKDKNRSSNERLEFLGDSILDLVVSEELYKNHKSYPE 77

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFI-----RVSSDLRKDVCSFMTSIQADVVESLI 123
           G+L+   + +V   + S+ + + +L+S++      +S + R+       S++AD  E+  
Sbjct: 78  GKLTKIRSRIVCTSSFSKASEKFNLSSYLLFGKGEISHNGREK-----KSVKADTFEAFC 132

Query: 124 AALYLDGGIEVAGTF-VDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           AA+YLD G      F ++ Y++  +  L++     D KT+LQE+ +       +YK+   
Sbjct: 133 AAIYLDAGYVFLKNFLMENYYQTVKELLENDLLFIDYKTKLQEYFNKTNRTILKYKLAKE 192

Query: 181 SGPDHDPRFTVVV 193
            GP+H+  F + V
Sbjct: 193 EGPEHNKTFYMDV 205


>gi|194097974|ref|YP_002001022.1| ribonuclease III [Neisseria gonorrhoeae NCCP11945]
 gi|239998445|ref|ZP_04718369.1| ribonuclease III [Neisseria gonorrhoeae 35/02]
 gi|240080149|ref|ZP_04724692.1| ribonuclease III [Neisseria gonorrhoeae FA19]
 gi|240117386|ref|ZP_04731448.1| ribonuclease III [Neisseria gonorrhoeae PID1]
 gi|240122943|ref|ZP_04735899.1| ribonuclease III [Neisseria gonorrhoeae PID332]
 gi|240125195|ref|ZP_04738081.1| ribonuclease III [Neisseria gonorrhoeae SK-92-679]
 gi|240127651|ref|ZP_04740312.1| ribonuclease III [Neisseria gonorrhoeae SK-93-1035]
 gi|238690180|sp|B4RJT7|RNC_NEIG2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|193933264|gb|ACF29088.1| ribonuclease III [Neisseria gonorrhoeae NCCP11945]
          Length = 239

 Score = 92.0 bits (227), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 104/197 (52%), Gaps = 7/197 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F  
Sbjct: 11  HTAIQKKLGYAFRDMSLLRRALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 67

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 68  LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +  D     A   V   + +R ++   F+   +D KT LQE   A+    P+Y++  + G
Sbjct: 128 VSFDADFNTAEKVVRHLFAER-VRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIG 186

Query: 183 PDHDPRFTVVVEISGLA 199
             +D  F +  ++  L 
Sbjct: 187 HANDSMFVISCDLGELG 203


>gi|146318845|ref|YP_001198557.1| dsRNA-specific ribonuclease [Streptococcus suis 05ZYH33]
 gi|145689651|gb|ABP90157.1| dsRNA-specific ribonuclease [Streptococcus suis 05ZYH33]
          Length = 196

 Score = 92.0 bits (227), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 66/195 (33%), Positives = 91/195 (46%), Gaps = 8/195 (4%)

Query: 32  ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91
           ISH+     ERLEFLGD +L L+IS  L+  +    EGE+S   ++ V  E+ +  +R  
Sbjct: 8   ISHN-----ERLEFLGDAVLQLMISKYLYQKYPDRPEGEMSKLRSTFVREESLAGFSRAC 62

Query: 92  DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151
               F+R+     K       +I  D  E+ + AL LD G +    F+ K    R L+ G
Sbjct: 63  GFDRFLRLGKGEEKSGGRNRDTILGDAFEAFLGALLLDKGEKTVEEFIHKVMIPR-LEKG 121

Query: 152 KFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            F R  D KT LQE       +   Y+V   SGP HD  F V V        +G   SK+
Sbjct: 122 NFERVTDYKTALQEILQVNGEIAISYQVIAESGPAHDKTFEVEVSADQRVIGRGRGRSKK 181

Query: 210 AAEQVAAAEVLKREG 224
            AEQ AA   ++  G
Sbjct: 182 LAEQAAAKNAVEARG 196


>gi|289450366|ref|YP_003474966.1| ribonuclease III [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184913|gb|ADC91338.1| ribonuclease III [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 245

 Score = 92.0 bits (227), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 108/222 (48%), Gaps = 9/222 (4%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHF 63
             E +IGY+F N+  L +ALTHS+ S+ +     E  ERLEFLGD +LGL +   LF  F
Sbjct: 17  NFENKIGYSFKNKKYLIEALTHSTYSYEHSMYGLECNERLEFLGDLVLGLTVGNHLFKTF 76

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            +  EG+LS    +LV   T + VA   +L   + +             S  AD  E+++
Sbjct: 77  PTYPEGKLSKLKAALVCEPTLAIVAHNWELDKVLLLGKGEETSGGRNKPSSLADATEAVL 136

Query: 124 AALYLDGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTP-EYKVTF 179
            A++ D     A T + +  +   Q A+ +G    D K+ L E    K+  +   + +  
Sbjct: 137 GAVFCDADFVAAATVILRALEPLIQEAV-AGNLVYDYKSALLEKIQTKYHSSQLRFVLLD 195

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            +GP H P F + + +     A  +  SK+ AEQ+AA + L+
Sbjct: 196 ETGPAHSPSFKMGIYLVNDLLATAIGSSKKEAEQIAAKQALQ 237


>gi|288923504|ref|ZP_06417623.1| ribonuclease III [Frankia sp. EUN1f]
 gi|288345162|gb|EFC79572.1| ribonuclease III [Frankia sp. EUN1f]
          Length = 281

 Score = 92.0 bits (227), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 70/208 (33%), Positives = 105/208 (50%), Gaps = 12/208 (5%)

Query: 19  NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           +  LL++ALTH S ++      + ERLEFLGD +LGL+++  LF       EG+L+ +  
Sbjct: 23  DPELLDRALTHRSYAYENGGLPTNERLEFLGDAVLGLIVTAALFRRHPDLPEGQLAKQRA 82

Query: 77  SLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           S+V+    + VAR +    +  ++ +             SI AD +E++I A+YL   ++
Sbjct: 83  SVVNMRALADVARRIGPTGIGPYLLLGRGEEATGGRDKPSILADTLEAVIGAVYLSNSLD 142

Query: 134 VAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
           VA  FV    D    + A +      D KT LQE   A  G+ P   V   +GPDH  RF
Sbjct: 143 VASGFVHRLFDPLLDEAAGRGAGL--DWKTSLQEQT-ALLGLGPPDYVVTEAGPDHAKRF 199

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           T    ++G    +G   SK+ AEQ AAA
Sbjct: 200 TAFARVAGEVLGEGEGGSKKEAEQRAAA 227


>gi|188997575|ref|YP_001931826.1| Ribonuclease III [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932642|gb|ACD67272.1| Ribonuclease III [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 249

 Score = 92.0 bits (227), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/191 (34%), Positives = 101/191 (52%), Gaps = 8/191 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDS 65
           LE+ IGY F ++SLL  A+TH S    Y +    YE LEFLGD ++ L+IS +L   F  
Sbjct: 24  LEQIIGYTFKDKSLLLAAITHRSFVAEYHKKIPDYEVLEFLGDAVISLIISEILIKQFPH 83

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A+EGELS   +++VS    S++AR +    F+ +S   +    +   S+  DV E++  A
Sbjct: 84  AREGELSQYRSAIVSEAYLSKLARNIYFQDFVLISKGEKSQKGAERESLLCDVFEAVFGA 143

Query: 126 LYLDG--GIEVAGTFVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +Y D    +++     +K +K+     ++     RD K+ LQ      +G  P YK+   
Sbjct: 144 IYTDCQYNLDIPREIFNKNFKEIVINDIQQENLPRDYKSLLQIETQRLYGKIPTYKLISS 203

Query: 181 SGPDHDPRFTV 191
            GP+HD  FTV
Sbjct: 204 EGPEHDKTFTV 214


>gi|254493164|ref|ZP_05106335.1| ribonuclease III [Neisseria gonorrhoeae 1291]
 gi|268600776|ref|ZP_06134943.1| ribonuclease III [Neisseria gonorrhoeae PID18]
 gi|226512204|gb|EEH61549.1| ribonuclease III [Neisseria gonorrhoeae 1291]
 gi|268584907|gb|EEZ49583.1| ribonuclease III [Neisseria gonorrhoeae PID18]
          Length = 267

 Score = 92.0 bits (227), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 104/197 (52%), Gaps = 7/197 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F  
Sbjct: 39  HTAIQKKLGYAFRDMSLLRRALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 95

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 96  LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSSGFRRPSILADAMEAMFAA 155

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +  D     A   V   + +R ++   F+   +D KT LQE   A+    P+Y++  + G
Sbjct: 156 VSFDADFNTAEKVVRHLFAER-VRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIG 214

Query: 183 PDHDPRFTVVVEISGLA 199
             +D  F +  ++  L 
Sbjct: 215 HANDSMFVISCDLGELG 231


>gi|56964064|ref|YP_175795.1| ribonuclease III [Bacillus clausii KSM-K16]
 gi|81365967|sp|Q5WFM6|RNC_BACSK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|56910307|dbj|BAD64834.1| ribonuclease III [Bacillus clausii KSM-K16]
          Length = 260

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 99/207 (47%), Gaps = 7/207 (3%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           R G  F NR LL +A THSS  +  +       ERLEFLGD +L L +S  LF  + +  
Sbjct: 39  RTGLTFENRKLLIQAFTHSSYVNEQRIFSSSDNERLEFLGDAVLELAVSQYLFKTYKNMS 98

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG+++    S+V   + ++ A EL     + +             ++ ADV E+ I ALY
Sbjct: 99  EGDMTKLRASIVCEPSLARFAEELQFGKLVLLGKGEEVTGGRTRPALLADVFEAFIGALY 158

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           +D G+E    F+ ++   + +K G F  + D K++LQE+          Y +    GP H
Sbjct: 159 MDQGLEPVFMFLARFMYPK-IKEGAFTYKMDFKSQLQEFVQRDNRGQIRYLIVQERGPAH 217

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAE 212
           D  F   V+++      G   SK+ AE
Sbjct: 218 DREFVSDVQLNEETIGTGTGRSKKEAE 244


>gi|239917409|ref|YP_002956967.1| RNAse III [Micrococcus luteus NCTC 2665]
 gi|239838616|gb|ACS30413.1| RNAse III [Micrococcus luteus NCTC 2665]
          Length = 220

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 103/199 (51%), Gaps = 5/199 (2%)

Query: 23  LEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
           LE+ALTH S ++      + ERLEFLGD +LG +++  +F  +    EG+L+ R  ++VS
Sbjct: 8   LERALTHRSFAYEQGGLPTNERLEFLGDSVLGYVVTDHIFTVYPDLAEGDLARRRAAVVS 67

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140
               ++VAR + +  F+R+ +  R+   +   SI AD +E+LI A+Y+D G   A   V 
Sbjct: 68  TRALAKVARRIGIGPFVRLGTGERRTGGADKDSILADTLEALIGAVYVDHGAVAAAALVH 127

Query: 141 KYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
           ++      +    R   D KT + E A ++ G+          GP HDPR+   + +   
Sbjct: 128 RHVVPLLDEPDLLRESTDWKTVVAEAA-SRHGLGAVRYAIEGQGPAHDPRYRATLVVGER 186

Query: 199 APAQGMDCSKRAAEQVAAA 217
                +  SK+ AE+ AAA
Sbjct: 187 EYGSAVASSKKQAERDAAA 205


>gi|161869625|ref|YP_001598793.1| ribonuclease III [Neisseria meningitidis 053442]
 gi|161595178|gb|ABX72838.1| ribonuclease III [Neisseria meningitidis 053442]
          Length = 310

 Score = 91.7 bits (226), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 103/197 (52%), Gaps = 7/197 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F  
Sbjct: 82  HAAIQKKLGYAFRDISLLRQALTHRSC---HTKHNERFEFVGDSILNYTVARMLFDAFPK 138

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+D+   + + +   K       SI AD +E++ AA
Sbjct: 139 LTEGELSRLRASLVNEGVLAEMAAEMDVGEGLYLGAGELKSGGFRRPSILADAMEAMFAA 198

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +  D     A   V   +  R ++   F+   +D KT LQE   A+    P+Y++  + G
Sbjct: 199 VSFDADFNTAEKVVRHLFADR-VRCADFQNQAKDGKTALQEALQARRFALPKYRIEEQIG 257

Query: 183 PDHDPRFTVVVEISGLA 199
             +D  F +  ++  L 
Sbjct: 258 HANDSMFVISCDLGELG 274


>gi|327403887|ref|YP_004344725.1| Ribonuclease 3 [Fluviicola taffensis DSM 16823]
 gi|327319395|gb|AEA43887.1| Ribonuclease 3 [Fluviicola taffensis DSM 16823]
          Length = 240

 Score = 91.7 bits (226), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 68/215 (31%), Positives = 112/215 (52%), Gaps = 12/215 (5%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           R GY   N  L  +A+TH SI++  Q+ +  ERLEFLGD IL  +I+  LF  F    EG
Sbjct: 26  RFGYRPKNIELFYQAVTHRSIAYHGQKDFSNERLEFLGDAILDSIIAEFLFQRFPEEDEG 85

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
            L+   + +VS +T S++  EL+L S +R +    K     ++S++ +  E++I A+YLD
Sbjct: 86  YLTKVKSKVVSRKTLSEIGEELELRSILRYN----KGRSINLSSLEGNAFEAIIGAIYLD 141

Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
              E     +  +  ++ +   K      D K++L  W+  +  +  E+ V  R   +H 
Sbjct: 142 SSYEETKKIIYNHIFRKYVDLNKILEEEIDFKSKLFIWSQKR-RLALEF-VVLREENNHG 199

Query: 187 PRF-TVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             F  V+V+++ +   +G   SK+ AEQ AA E L
Sbjct: 200 TWFYEVIVQVNSVNYGKGSGNSKKLAEQAAAKETL 234


>gi|254673607|emb|CBA09131.1| ribonuclease III [Neisseria meningitidis alpha275]
          Length = 267

 Score = 91.7 bits (226), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 103/197 (52%), Gaps = 7/197 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++KR+GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F  
Sbjct: 39  HAAIQKRLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDTFPK 95

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 96  LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 155

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +  D     A   V   +  R ++   F+   +D KT LQE   A+    P+Y++  + G
Sbjct: 156 VSFDADFNTAEKVVRHLFADR-VRCADFQNQAKDGKTALQEALQARRFALPKYRIEEQIG 214

Query: 183 PDHDPRFTVVVEISGLA 199
             +D  F V  ++  L 
Sbjct: 215 HANDSMFVVSCDLGELG 231


>gi|313668838|ref|YP_004049122.1| ribonuclease III [Neisseria lactamica ST-640]
 gi|313006300|emb|CBN87763.1| putative ribonuclease III [Neisseria lactamica 020-06]
          Length = 239

 Score = 91.7 bits (226), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 104/197 (52%), Gaps = 7/197 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F  
Sbjct: 11  HAAIQKKLGYAFRDISLLRQALTHRS---CHTKHNERFEFVGDSILNYTVARMLFDAFPK 67

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 68  LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +  D     A   V   +  R ++   F+   +DAKT LQE   A+    P+Y++  + G
Sbjct: 128 VSFDADFNTAEKVVRHLFADR-VRRADFQNQAKDAKTALQEALQARRFALPKYRIEEQIG 186

Query: 183 PDHDPRFTVVVEISGLA 199
             +D  F +  ++  L 
Sbjct: 187 HANDSMFVISCDLGELG 203


>gi|300783718|ref|YP_003764009.1| ribonuclease III [Amycolatopsis mediterranei U32]
 gi|299793232|gb|ADJ43607.1| ribonuclease III [Amycolatopsis mediterranei U32]
          Length = 234

 Score = 91.7 bits (226), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 74/208 (35%), Positives = 105/208 (50%), Gaps = 14/208 (6%)

Query: 19  NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           +  LL  +LTH S ++        ERLEFLGD +LGL+++  L+N      EG+L+    
Sbjct: 10  DPELLRLSLTHRSYAYENGGLPPNERLEFLGDAVLGLVVTDHLYNTHPDLPEGQLAKLRA 69

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSF---MTSIQADVVESLIAALYLDGGIE 133
           S+V+    ++VAR L            + +  +      SI AD +E++I A+YL+ GIE
Sbjct: 70  SVVNMHALARVARGLGEGGLGAHLLLGKGEELTGGRDKASILADGLEAVIGAVYLEHGIE 129

Query: 134 VAGTFV----DKYWKQRALKSGKFRRDAKTELQEW-AHAKFGVTPEYKVTFRSGPDHDPR 188
           +A   V    D    +  L+      D KT LQE  A A  GV PEYKV   +GPDH   
Sbjct: 130 IARKLVHHLFDGLLAEAPLRGAGL--DWKTSLQELTASAGLGV-PEYKVE-DTGPDHRKE 185

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           FT  V ++G     G   +K+ AEQ AA
Sbjct: 186 FTATVLVAGRPLGHGAGSTKKEAEQKAA 213


>gi|126654291|ref|ZP_01726068.1| ribonuclease III [Bacillus sp. B14905]
 gi|126589255|gb|EAZ83416.1| ribonuclease III [Bacillus sp. B14905]
          Length = 254

 Score = 91.7 bits (226), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 105/218 (48%), Gaps = 7/218 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY----ERLEFLGDRILGLLISTLLF 60
           ++  L+  +   F N++LL +A THSS  + ++       ERLEFLGD +L L +S  LF
Sbjct: 22  QFELLQHELNITFVNKNLLYQAFTHSSYVNEHRRKLFTDNERLEFLGDAVLELSVSKYLF 81

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             + +  EGEL+    S+V   +    A EL    F+ +             ++ ADV E
Sbjct: 82  EKYPNMSEGELTKLRASIVCEPSLVIFANELGFGRFVLLGKGEELTGGRERPALLADVFE 141

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178
           S + ALYLD  ++   +F+++    + ++ G F    D K++LQE           Y++ 
Sbjct: 142 SFVGALYLDQDLQTVVSFLERIVFPK-VEVGAFSHVMDFKSQLQEMVQQTNNGLLHYEII 200

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
              GP H+  F   V ++G     G   SK+ AEQ AA
Sbjct: 201 DEKGPAHNRTFVSSVLLNGQELGIGRGKSKKEAEQQAA 238


>gi|320541047|ref|ZP_08040477.1| RNase III [Serratia symbiotica str. Tucson]
 gi|320028891|gb|EFW11140.1| RNase III [Serratia symbiotica str. Tucson]
          Length = 172

 Score = 91.7 bits (226), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 84/167 (50%), Gaps = 3/167 (1%)

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L+  F    EG++S    +LV   T +++ARE DL   +R+     K   S   SI AD 
Sbjct: 2   LYQRFPHIDEGDMSRMRATLVRGHTLAEMAREFDLGECLRLGPGELKSGGSRRESILADT 61

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           VE+LI  ++LD  ++     +  +++ R   +  G  ++D KT LQE         P Y 
Sbjct: 62  VEALIGGVFLDSDMQRVERLILDWYRSRLDEISPGDKQKDPKTRLQELLQGHHLPLPSYL 121

Query: 177 VTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222
           V    G  HD  FT+  ++SGL  P  G+  S+R AEQ AA + LK+
Sbjct: 122 VVQVRGEAHDQEFTIHCQVSGLNEPVMGIGSSRRKAEQAAAEQTLKK 168


>gi|268564825|ref|XP_002639240.1| C. briggsae CBR-DRSH-1 protein [Caenorhabditis briggsae]
 gi|74847096|sp|Q61XX9|RNC_CAEBR RecName: Full=Ribonuclease 3; AltName: Full=Protein drosha; AltName:
            Full=Ribonuclease III; Short=RNase III
 gi|187036021|emb|CAP24627.1| CBR-DRSH-1 protein [Caenorhabditis briggsae AF16]
          Length = 1061

 Score = 91.7 bits (226), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 104/203 (51%), Gaps = 15/203 (7%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHF 63
            +  LE+ IG  F N  LL KA T  ++  +   +   +RLE+LGD +L L+IS  L+ +F
Sbjct: 811  FHRLEQIIGIEFNNIRLLAKAFTRRNVPFNDLTKGHNQRLEWLGDSVLQLIISDYLYRNF 870

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
                EG +S+   SLVS +T S V  +L    F+ + +  RK+        +AD+VE+ I
Sbjct: 871  PLHHEGHMSLLRTSLVSNQTQSVVCDDLGFQEFV-IKAPHRKN--DLKMKDKADLVEAFI 927

Query: 124  AALYLDGGIEVAGTFVDKYWKQRA---LKSGKFRRDAKTELQEWAHA------KFGVTPE 174
             ALY+D G+E   +F+   +  R    + S K+  DAK+ LQ+W  A           PE
Sbjct: 928  GALYVDKGLEYCRSFIRTVFCPRLKHFINSEKW-NDAKSHLQQWCLAIRDSRNPNPAMPE 986

Query: 175  YKVTFRSGPDHDPRFTVVVEISG 197
            Y++    GP ++  F V V   G
Sbjct: 987  YRLLGIQGPTNNRIFRVAVYFRG 1009



 Score = 37.4 bits (85), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 77/195 (39%), Gaps = 54/195 (27%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSS---------------ISH-SYQESY---------- 40
           S  EK I Y F +R ++E AL HSS               IS+  Y++ Y          
Sbjct: 587 SVFEKVIEYKFNDRRIVELALIHSSFRSYYGTTPDHVKNMISNCGYRKKYGAEERREKKK 646

Query: 41  ----------------------ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
                                 ERLE+LGD ++ L+ S  LF   +   EG L+    +L
Sbjct: 647 GIISLFNIMGGETSGGEPILHNERLEYLGDAVVELIASHHLFFILNHHFEGGLATYRTAL 706

Query: 79  VSAETCSQVARELDLASFIRVS--SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           V     +++A    +   ++ +  +DL  +  +      A+  E+L+A ++LD GI    
Sbjct: 707 VQNRNLAKLAMNCRIDEMLQFAHGADLINE--AEWKHALANAFEALMAGVFLDSGIAPCD 764

Query: 137 TFVDK--YWKQRALK 149
               K  Y K   +K
Sbjct: 765 AIFSKAMYGKDPEMK 779


>gi|317125435|ref|YP_004099547.1| RNAse III [Intrasporangium calvum DSM 43043]
 gi|315589523|gb|ADU48820.1| RNAse III [Intrasporangium calvum DSM 43043]
          Length = 265

 Score = 91.7 bits (226), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 108/217 (49%), Gaps = 12/217 (5%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE+ +G    +  LL ++LTH S ++      + ERLEFLGD +LGL+++  L+      
Sbjct: 27  LEEVVGQEI-DEPLLLRSLTHRSFAYENGGVPNNERLEFLGDSVLGLVVTDTLYRSHPDL 85

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+L+    ++V+    + VAR  DL  ++ +             SI AD +E+LI  +
Sbjct: 86  PEGQLAKLRAAVVNMRALADVARTFDLGQYVMLGKGEEATGGRDKASILADSMEALIGTV 145

Query: 127 YLDGGIEVAGTFVDKYW-----KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           YL   I++A  F+  ++     +   L +G    D KT LQ+ A A     PEY+V    
Sbjct: 146 YLSTDIDLAAQFIHHHFDAILEEAATLGAG---LDWKTSLQQVAAAVGQGAPEYRVA-EQ 201

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           GPDH+  F   V +      +G   SK+ AEQ AA E
Sbjct: 202 GPDHEKEFHARVVLGEEVLGEGHGRSKKEAEQKAAQE 238


>gi|303229664|ref|ZP_07316452.1| ribonuclease III [Veillonella atypica ACS-134-V-Col7a]
 gi|302515789|gb|EFL57743.1| ribonuclease III [Veillonella atypica ACS-134-V-Col7a]
          Length = 247

 Score = 91.7 bits (226), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 70/209 (33%), Positives = 104/209 (49%), Gaps = 8/209 (3%)

Query: 21  SLLEKALTHSSISHSYQESY----ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           S+L+ A TH+S ++ ++  +    +RLEFLGD +L L+I   LF  +    EG L+    
Sbjct: 35  SILDCAFTHTSYANEHKFKHIHHNQRLEFLGDAVLDLIIGEYLFTTYPDMSEGNLTKIKA 94

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           + V  ++ + V+R L L  ++ +    +    S   SI AD  ESLI ALY+    +   
Sbjct: 95  ATVCEDSLATVSRTLHLGDYLLLGHGEKSSGGSDRKSILADTFESLIGALYITTDYKTVM 154

Query: 137 TFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
            FV        ++AL+ GK  +D KT LQE+          Y +   SGPDH   F + V
Sbjct: 155 DFVLHQLAPNLKQALE-GKRGKDYKTLLQEFVQRDGDKHIVYSLISESGPDHAKTFMMEV 213

Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            I G+    G   SK+ AEQ AA   L+R
Sbjct: 214 SIDGITYEAGTGKSKKIAEQHAAQLTLER 242


>gi|294507352|ref|YP_003571410.1| Ribonuclease III [Salinibacter ruber M8]
 gi|294343680|emb|CBH24458.1| Ribonuclease III [Salinibacter ruber M8]
          Length = 243

 Score = 91.3 bits (225), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 103/220 (46%), Gaps = 6/220 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62
           + +E+ +G    + S   +ALTH S+   +      S ERLEFLGD +L + +  +L++ 
Sbjct: 14  AAIEQLVGRPVDDLSHYRRALTHRSLLRVHPARTFRSNERLEFLGDALLDVFVGEVLYDR 73

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L+     LVS    +  AR L L   + +S +  +       SI AD  E+ 
Sbjct: 74  FPEKDEGALTRLRARLVSERPLATYARGLGLGPHLLMSENAAEGDGRDNPSILADAFEAF 133

Query: 123 IAALYLDGGIEVAGTFV-DKYWKQRALKSGKFRRDA-KTELQEWAHAKFGVTPEYKVTFR 180
           + A+YLD G E A  FV D+      L+    R D  K++L E   A     P Y V   
Sbjct: 134 VGAVYLDLGHEAARGFVQDRVLAPVDLEDVATRDDNYKSQLLEHLQALGRPQPTYHVVEE 193

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            GP HD  FTV V +      +G   SK+ AEQ AA   L
Sbjct: 194 KGPSHDKTFTVEVRVGDADYERGTAGSKQDAEQQAARRTL 233


>gi|59800710|ref|YP_207422.1| ribonuclease III [Neisseria gonorrhoeae FA 1090]
 gi|75432565|sp|Q5F9X7|RNC_NEIG1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|59717605|gb|AAW89010.1| putative ribonuclease III [Neisseria gonorrhoeae FA 1090]
          Length = 239

 Score = 91.3 bits (225), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 103/197 (52%), Gaps = 7/197 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F  
Sbjct: 11  HTAIQKKLGYAFRDMSLLRRALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 67

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 68  LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSSGFRRPSILADAMEAMFAA 127

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +  D     A   V   + +R ++   F+   +D KT LQE   A+    P+Y++  + G
Sbjct: 128 VSFDADFNTAEKVVRHLFAER-VRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIG 186

Query: 183 PDHDPRFTVVVEISGLA 199
              D  F +  ++  L 
Sbjct: 187 HADDSMFVISCDLGELG 203


>gi|297250746|ref|ZP_06864987.2| ribonuclease III [Neisseria polysaccharea ATCC 43768]
 gi|296838254|gb|EFH22192.1| ribonuclease III [Neisseria polysaccharea ATCC 43768]
          Length = 267

 Score = 91.3 bits (225), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 102/197 (51%), Gaps = 7/197 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++KR+GYAF + SLL +ALTH S    + E   R EF+GD IL   ++ +LF+ F  
Sbjct: 39  HAAIQKRLGYAFRDISLLRQALTHRSCHTKHNE---RFEFVGDSILNYTVARMLFDAFPK 95

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 96  LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 155

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +  D     A   V   +  R ++   F+   +D KT LQE   A+    P+Y++  + G
Sbjct: 156 VSFDADFNTAEKVVRHLFADR-VRCADFQNQAKDGKTALQEALQARRFALPKYRIEEQIG 214

Query: 183 PDHDPRFTVVVEISGLA 199
             +D  F V  ++  L 
Sbjct: 215 YANDSMFVVSCDLGELG 231


>gi|268594306|ref|ZP_06128473.1| ribonuclease III [Neisseria gonorrhoeae 35/02]
 gi|268596300|ref|ZP_06130467.1| ribonuclease III [Neisseria gonorrhoeae FA19]
 gi|268603082|ref|ZP_06137249.1| ribonuclease III [Neisseria gonorrhoeae PID1]
 gi|268681562|ref|ZP_06148424.1| ribonuclease III [Neisseria gonorrhoeae PID332]
 gi|268683791|ref|ZP_06150653.1| ribonuclease III [Neisseria gonorrhoeae SK-92-679]
 gi|268686031|ref|ZP_06152893.1| ribonuclease III [Neisseria gonorrhoeae SK-93-1035]
 gi|268547695|gb|EEZ43113.1| ribonuclease III [Neisseria gonorrhoeae 35/02]
 gi|268550088|gb|EEZ45107.1| ribonuclease III [Neisseria gonorrhoeae FA19]
 gi|268587213|gb|EEZ51889.1| ribonuclease III [Neisseria gonorrhoeae PID1]
 gi|268621846|gb|EEZ54246.1| ribonuclease III [Neisseria gonorrhoeae PID332]
 gi|268624075|gb|EEZ56475.1| ribonuclease III [Neisseria gonorrhoeae SK-92-679]
 gi|268626315|gb|EEZ58715.1| ribonuclease III [Neisseria gonorrhoeae SK-93-1035]
 gi|317163728|gb|ADV07269.1| ribonuclease III [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 267

 Score = 91.3 bits (225), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 104/197 (52%), Gaps = 7/197 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F  
Sbjct: 39  HTAIQKKLGYAFRDMSLLRRALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 95

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 96  LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 155

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +  D     A   V   + +R ++   F+   +D KT LQE   A+    P+Y++  + G
Sbjct: 156 VSFDADFNTAEKVVRHLFAER-VRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIG 214

Query: 183 PDHDPRFTVVVEISGLA 199
             +D  F +  ++  L 
Sbjct: 215 HANDSMFVISCDLGELG 231


>gi|332670942|ref|YP_004453950.1| ribonuclease III [Cellulomonas fimi ATCC 484]
 gi|332339980|gb|AEE46563.1| ribonuclease III [Cellulomonas fimi ATCC 484]
          Length = 258

 Score = 91.3 bits (225), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 69/202 (34%), Positives = 97/202 (48%), Gaps = 5/202 (2%)

Query: 19  NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           +  LL  ALTH S +H      + ERLEFLGD +LGL+++  L+       EG L+    
Sbjct: 17  DPELLVLALTHRSFAHEAGGIPTNERLEFLGDTVLGLVVTESLYRRHPEQPEGALAKMRA 76

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           + VS    + VARELDL +++ +         +   SI +D +E+L  A+YL  G+E A 
Sbjct: 77  ATVSQRALAGVARELDLGAYVLLGKGELATGGADKDSILSDTLEALFGAVYLAHGLETAR 136

Query: 137 TFVDKYWKQRALKSGKFRRDA--KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
             VD++       +         KT LQE + A     P Y V    GPDH   FT    
Sbjct: 137 VVVDRFVGPTLDAAAALGAGLDWKTSLQELSAALGLGAPSYDVVGE-GPDHARTFTARAV 195

Query: 195 ISGLAPAQGMDCSKRAAEQVAA 216
           I+G     G   +K+ AEQ AA
Sbjct: 196 IAGEPRGAGSGPAKKLAEQHAA 217


>gi|309776509|ref|ZP_07671491.1| ribonuclease III [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915737|gb|EFP61495.1| ribonuclease III [Erysipelotrichaceae bacterium 3_1_53]
          Length = 227

 Score = 91.3 bits (225), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 107/212 (50%), Gaps = 6/212 (2%)

Query: 16  AFANRSLLEKALTHSSISH---SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           A+++++L+ +AL HSS  +   SY    ERLEF+GD +L L  +  LF       EG+++
Sbjct: 14  AYSDKTLITQALVHSSYVNEHKSYAHDNERLEFMGDAVLQLWTTKKLFLLEPELSEGQMT 73

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                LV  E  ++  R+L L  ++ +     K       SI AD+ E+L+ A++LD G+
Sbjct: 74  TLRAQLVCEEALAEYNRQLGLGKYLMLGVGEEKTGGRQRDSILADMFEALLGAVFLDQGM 133

Query: 133 EVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
                 +       A+   K  +  D KT+LQE+  +    T  Y+    SGP + P F 
Sbjct: 134 AAIDIILSAVVTP-AISRPKSEKVIDYKTKLQEYIQSDSRKTVHYETVNVSGPSNKPEFE 192

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           V+V +  +   +G   SK+ AEQ+AA +  ++
Sbjct: 193 VIVMLDDINLGRGKGFSKKRAEQMAAKDAFEK 224


>gi|229168588|ref|ZP_04296311.1| Ribonuclease 3 [Bacillus cereus AH621]
 gi|228614994|gb|EEK72096.1| Ribonuclease 3 [Bacillus cereus AH621]
          Length = 245

 Score = 91.3 bits (225), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 110/223 (49%), Gaps = 7/223 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +   ++ IG  F +  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 19  FKVFQEEIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A E+   S + +             ++ ADV E+
Sbjct: 79  KYPTMSEGELTKLRAAIVCEPSLVRFANEMSFGSLVLLGKGEEMTGGRERPALLADVFEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179
            I ALYLD G+E+   ++ +    + +  G F    D K++LQE          EY++  
Sbjct: 139 FIGALYLDQGLEIVWGYLKEVVYPK-INEGAFSHVMDYKSQLQELIQRDGSGNVEYQILQ 197

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             GP H+  F   V ++  A   G   SK+ AEQ AAAE LK+
Sbjct: 198 EKGPAHNREFVSRVTLNNEALGLGSGKSKKEAEQQAAAEALKK 240


>gi|156359582|ref|XP_001624846.1| predicted protein [Nematostella vectensis]
 gi|156211649|gb|EDO32746.1| predicted protein [Nematostella vectensis]
          Length = 917

 Score = 91.3 bits (225), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 113/223 (50%), Gaps = 17/223 (7%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66
            E+  G  F +  LL +A TH  +  +       +RLEFLGD +L  ++S  L+ HF   
Sbjct: 681 FEEGSGIPFTHIRLLARAFTHPQVGKNNLTLGDNQRLEFLGDSVLQFVVSVFLYQHFPDH 740

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFMTSIQADVVESLIAA 125
            EG L++  +SLV++ + +++AR+L+L  FI    +++R+        + ADV+E+LIAA
Sbjct: 741 HEGHLTLLRSSLVNSRSQAEIARQLNLQEFINTGPTNVRE-------KMLADVLEALIAA 793

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHA-----KFGVTPEYKVT 178
           +++D G+     F    +  R   S   +   D+K++LQ+   A     K    P Y++ 
Sbjct: 794 VFVDKGLRHVEVFCRVCFFSRLEDSIVNQEWIDSKSQLQQCCLAMRTEGKSPDLPIYRIL 853

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             +GP H  ++ V V   G    +G   S   AE  AA + L+
Sbjct: 854 QDAGPAHHKKYQVGVYFQGTRCGKGEGSSIHQAEMAAAKDALE 896



 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 56/97 (57%), Gaps = 4/97 (4%)

Query: 41  ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
           ERLEFLGD +L L+ S  LF       EG L+   ++LV     + +A+ LDL+ +++ S
Sbjct: 537 ERLEFLGDAVLELICSKHLFFMLPDMDEGHLATFRSALVQNRHLALLAKMLDLSDYMQFS 596

Query: 101 SDLRKDVCS--FMTSIQADVVESLIAALYLDGGIEVA 135
                D+C    +    A+ +E+L+ A+YL+ G++VA
Sbjct: 597 HG--PDLCQEDDLNHAMANCLEALLGAVYLEAGLQVA 631


>gi|269214809|ref|ZP_05987185.2| ribonuclease III [Neisseria lactamica ATCC 23970]
 gi|269208949|gb|EEZ75404.1| ribonuclease III [Neisseria lactamica ATCC 23970]
          Length = 267

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 104/197 (52%), Gaps = 7/197 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F  
Sbjct: 39  HAAIQKKLGYAFRDISLLRQALTHRS---CHTKHNERFEFVGDSILNYTVARMLFDAFPK 95

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 96  LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 155

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +  D     A   V   +  R ++   F+   +DAKT LQE   A+    P+Y++  + G
Sbjct: 156 VSFDADFNTAEKVVRHLFADR-VRRADFQNQAKDAKTALQEALQARRFALPKYRIEEQIG 214

Query: 183 PDHDPRFTVVVEISGLA 199
             +D  F +  ++  L 
Sbjct: 215 HANDSMFVISCDLGELG 231


>gi|169827094|ref|YP_001697252.1| ribonuclease 3 [Lysinibacillus sphaericus C3-41]
 gi|168991582|gb|ACA39122.1| Ribonuclease 3 [Lysinibacillus sphaericus C3-41]
          Length = 254

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 105/218 (48%), Gaps = 7/218 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY----ERLEFLGDRILGLLISTLLF 60
           ++  L+  +   F N++LL +A THSS  + ++       ERLEFLGD +L L +S  LF
Sbjct: 22  QFELLQHELNITFINKNLLYQAFTHSSYVNEHRRKLFTDNERLEFLGDAVLELSVSKYLF 81

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             + +  EGEL+    S+V   +    A EL    F+ +             ++ ADV E
Sbjct: 82  EKYPNMSEGELTKLRASIVCEPSLVIFANELGFGRFVLLGKGEELTGGRERPALLADVFE 141

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178
           S + ALYLD  ++   +F+++    + ++ G F    D K++LQE           Y++ 
Sbjct: 142 SFVGALYLDQDLQTVVSFLERIVFPK-VEVGAFSHVMDFKSQLQEMVQQTNNGLLHYEII 200

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
              GP H+  F   V ++G     G   SK+ AEQ AA
Sbjct: 201 DEKGPAHNRTFVSSVLLNGQELGIGRGKSKKEAEQQAA 238


>gi|299536778|ref|ZP_07050086.1| ribonuclease 3 [Lysinibacillus fusiformis ZC1]
 gi|298727790|gb|EFI68357.1| ribonuclease 3 [Lysinibacillus fusiformis ZC1]
          Length = 254

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 105/218 (48%), Gaps = 7/218 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY----ERLEFLGDRILGLLISTLLF 60
           ++  L+  +   F N++LL +A THSS  + ++       ERLEFLGD +L L +S  LF
Sbjct: 22  QFELLQHELNITFINKNLLYQAFTHSSYVNEHRRKLFTDNERLEFLGDAVLELSVSKYLF 81

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             + +  EGEL+    S+V   +    A EL    F+ +             ++ ADV E
Sbjct: 82  EKYPNMSEGELTKLRASIVCEPSLVIFANELGFGRFVLLGKGEELTGGRERPALLADVFE 141

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178
           S + ALYLD  ++   +F+++    + ++ G F    D K++LQE           Y++ 
Sbjct: 142 SFVGALYLDQDLQTVVSFLERVVFPK-VEVGAFSHVMDFKSQLQEMVQQTNNGLLHYEII 200

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
              GP H+  F   V ++G     G   SK+ AEQ AA
Sbjct: 201 DEKGPAHNRTFVSSVLLNGQELGIGRGKSKKEAEQQAA 238


>gi|240013570|ref|ZP_04720483.1| ribonuclease III [Neisseria gonorrhoeae DGI18]
 gi|240112363|ref|ZP_04726853.1| ribonuclease III [Neisseria gonorrhoeae MS11]
 gi|240120639|ref|ZP_04733601.1| ribonuclease III [Neisseria gonorrhoeae PID24-1]
 gi|260441082|ref|ZP_05794898.1| ribonuclease III [Neisseria gonorrhoeae DGI2]
          Length = 239

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 103/197 (52%), Gaps = 7/197 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F  
Sbjct: 11  HTAIQKKLGYAFRDMSLLRRALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 67

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 68  LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +  D     A   V   + +R ++   F+   +D KT LQE   A+    P+Y++  + G
Sbjct: 128 VSFDADFNTAEKVVRHLFAER-VRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIG 186

Query: 183 PDHDPRFTVVVEISGLA 199
              D  F +  ++  L 
Sbjct: 187 HADDSMFVISCDLGELG 203


>gi|261408033|ref|YP_003244274.1| ribonuclease III [Paenibacillus sp. Y412MC10]
 gi|329929588|ref|ZP_08283295.1| ribonuclease III [Paenibacillus sp. HGF5]
 gi|261284496|gb|ACX66467.1| ribonuclease III [Paenibacillus sp. Y412MC10]
 gi|328936233|gb|EGG32685.1| ribonuclease III [Paenibacillus sp. HGF5]
          Length = 233

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/220 (34%), Positives = 109/220 (49%), Gaps = 7/220 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSI--SHSYQESY--ERLEFLGDRILGLLISTLLFNHFD 64
           L+ ++   F N  LL++A TH+S    H + +S   ERLEFLGD +L L +S  L+N F 
Sbjct: 9   LQHKLQIQFRNAMLLKQAFTHASYVNEHRFSQSQDNERLEFLGDAVLELTVSEFLYNLFP 68

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGEL+    ++V   +  Q A  LD   ++ +             ++ ADV ES + 
Sbjct: 69  DRPEGELTKLRAAIVCEPSLVQFAVSLDFGRYVLLGKGEEMTGGRTRPALLADVFESFVG 128

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWA-HAKFGVTPEYKVTFRSG 182
           ALYLD G+E    F+  +       +G+ +  D KTELQE   H   G   EY++    G
Sbjct: 129 ALYLDQGLEAVRRFLSDHVFPTVTVNGRPQMSDYKTELQELTQHHGMGAL-EYRIVEERG 187

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           P H+  F   V +      +G   SK+ AEQ AAA  LK+
Sbjct: 188 PAHEREFVSEVYMGSECLGRGSGRSKKEAEQQAAAVALKQ 227


>gi|315640113|ref|ZP_07895235.1| ribonuclease III [Enterococcus italicus DSM 15952]
 gi|315484090|gb|EFU74564.1| ribonuclease III [Enterococcus italicus DSM 15952]
          Length = 233

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 101/209 (48%), Gaps = 7/209 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNH 62
           ++L++     F    LLE+A THSS  + ++       ERLEFLGD +L LL+S  L+  
Sbjct: 10  TSLKENYQIVFQEIGLLEQAFTHSSYVNEHRNMALSDNERLEFLGDAVLELLVSQYLYRK 69

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG+L+    S+V  ++ ++ ARE     +IR+             S+  D+ ES 
Sbjct: 70  FPEIPEGKLTKLRASMVREDSLAEFARECGFDQYIRLGKGEENSGGRQRNSLLCDLFESF 129

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180
           + ALYLD  +E    F+ K    + + +G F    D KT+LQE       V  +Y++T  
Sbjct: 130 LGALYLDQELEAVNQFLKKVVFPK-VDAGAFSHEMDHKTKLQEVLQRAGDVFIDYRLTNE 188

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            GP H+  F   V   G    +G   SK+
Sbjct: 189 EGPAHERVFWTEVYCDGQLIGRGQGKSKK 217


>gi|238063283|ref|ZP_04607992.1| ribonuclease III [Micromonospora sp. ATCC 39149]
 gi|237885094|gb|EEP73922.1| ribonuclease III [Micromonospora sp. ATCC 39149]
          Length = 296

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/204 (34%), Positives = 104/204 (50%), Gaps = 12/204 (5%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LLE+ALTH S ++      + ERLEFLGD +LG++I+T LF++     EG+L+    S+V
Sbjct: 26  LLERALTHRSYAYENGGLPTNERLEFLGDSVLGVVITTALFHNHPDLPEGQLAKLRASVV 85

Query: 80  SAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           +    + VAR L    L +++ +             SI AD +E+L+ A+YL  G++ A 
Sbjct: 86  NMRALADVARGLGPDGLGAYLLLGKGEESTGGRDKASILADTLEALLGAIYLQYGLDTAA 145

Query: 137 TFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
             +    D    + A +      D KT LQE   A     PEY++   +GPDH   FT  
Sbjct: 146 IVIHRLFDPLMAESAGRGAAL--DWKTSLQELTAALGLGVPEYRIEG-TGPDHLKTFTAW 202

Query: 193 VEISGLAPAQGMDCSKRAAEQVAA 216
           V ++G         SK+ AEQ AA
Sbjct: 203 VVVAGNRYGGAEGRSKKEAEQRAA 226


>gi|254804568|ref|YP_003082789.1| ribonuclease III family protein [Neisseria meningitidis alpha14]
 gi|254668109|emb|CBA04665.1| ribonuclease III family protein [Neisseria meningitidis alpha14]
 gi|254670529|emb|CBA06329.1| ribonuclease III [Neisseria meningitidis alpha153]
          Length = 310

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 104/197 (52%), Gaps = 7/197 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++KR+GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F  
Sbjct: 82  HAAIQKRLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDTFPK 138

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 139 LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 198

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +  D     A   V   + +R ++   F+   +D KT LQE   A+    P+Y++  + G
Sbjct: 199 VSFDADFNTAEKVVRHLFAER-VRRVDFQNQAKDGKTALQEALQARRFALPKYRIEEQIG 257

Query: 183 PDHDPRFTVVVEISGLA 199
             +D  F V  ++  L 
Sbjct: 258 HANDSMFVVSCDLGELG 274


>gi|313678609|ref|YP_004056349.1| ribonuclease III [Mycoplasma bovis PG45]
 gi|312950171|gb|ADR24766.1| ribonuclease III [Mycoplasma bovis PG45]
          Length = 224

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/202 (31%), Positives = 107/202 (52%), Gaps = 8/202 (3%)

Query: 25  KALTH-SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83
           +A TH SS +++  ++Y+ LEFLGD IL   +S +LFN F    +G+L++    LV  ++
Sbjct: 23  QAFTHGSSAANAKNKNYQTLEFLGDAILQFYVSAILFNVFKDKNQGQLTLIRAKLVCTDS 82

Query: 84  CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143
            + +A  L L  F+ +SS++  +       + AD+ ESL+AA+++D G+     F+DK  
Sbjct: 83  LNSIADRLKLKDFLLLSSNVVANEVLSSKKVGADIFESLVAAIFIDQGMPKVKEFLDKTL 142

Query: 144 KQ--RALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
               +  K GK   +D+KT LQE+  + F     +  T++S    + +F       G   
Sbjct: 143 LPLVKQYKEGKIELKDSKTRLQEYMQS-FSKKTVFYQTYQS---DNNQFKSEAIYEGNVY 198

Query: 201 AQGMDCSKRAAEQVAAAEVLKR 222
             G+  SK  AE+ AA + L +
Sbjct: 199 GSGLGKSKHEAEENAANDALNK 220


>gi|315502406|ref|YP_004081293.1| ribonuclease iii [Micromonospora sp. L5]
 gi|315409025|gb|ADU07142.1| ribonuclease III [Micromonospora sp. L5]
          Length = 267

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/217 (33%), Positives = 109/217 (50%), Gaps = 13/217 (5%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE   G +  +  LLE+ALTH S ++      + ERLEFLGD +LG++I+T LF++    
Sbjct: 14  LEAAFGVSL-DPELLERALTHRSYAYENGGLPTNERLEFLGDSVLGVVITTALFHNHPDL 72

Query: 67  KEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            EG+L+    S+V+    + VAR L    L +++ +             SI AD +E+L+
Sbjct: 73  PEGQLAKLRASVVNMRALADVARGLGPDGLGAYLLLGKGEEATGGRDKASILADTLEALL 132

Query: 124 AALYLDGGIEVAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            A+YL  G++ A   +    D    + A +      D KT LQE   A     PEY++  
Sbjct: 133 GAIYLQYGLDTAAIVIHRLFDPLMAESAGRGAAL--DWKTSLQELTAALGLGVPEYRIEG 190

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            +GPDH   FT  V ++G         SK+ AEQ AA
Sbjct: 191 -TGPDHLKTFTAWVVVAGNRYGGAEGRSKKEAEQRAA 226


>gi|302865861|ref|YP_003834498.1| ribonuclease III [Micromonospora aurantiaca ATCC 27029]
 gi|302568720|gb|ADL44922.1| ribonuclease III [Micromonospora aurantiaca ATCC 27029]
          Length = 267

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/217 (33%), Positives = 109/217 (50%), Gaps = 13/217 (5%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE   G +  +  LLE+ALTH S ++      + ERLEFLGD +LG++I+T LF++    
Sbjct: 14  LEAAFGVSL-DPELLERALTHRSYAYENGGLPTNERLEFLGDSVLGVVITTALFHNHPDL 72

Query: 67  KEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            EG+L+    S+V+    + VAR L    L +++ +             SI AD +E+L+
Sbjct: 73  PEGQLAKLRASVVNMRALADVARGLGPDGLGAYLLLGKGEEATGGRDKASILADTLEALL 132

Query: 124 AALYLDGGIEVAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            A+YL  G++ A   +    D    + A +      D KT LQE   A     PEY++  
Sbjct: 133 GAIYLQYGLDTAAIVIHRLFDPLMAESAGRGAAL--DWKTSLQELTAALGLGVPEYRIEG 190

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            +GPDH   FT  V ++G         SK+ AEQ AA
Sbjct: 191 -TGPDHLKTFTAWVVVAGNRYGGAEGRSKKEAEQRAA 226


>gi|325203773|gb|ADY99226.1| ribonuclease III [Neisseria meningitidis M01-240355]
          Length = 239

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 103/197 (52%), Gaps = 7/197 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F  
Sbjct: 11  HAAIQKKLGYAFRDISLLRQALTHRSC---HTKHNERFEFVGDSILNYTVARMLFDAFPK 67

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 68  LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +  D     A   V   +  R ++   F+   +D KT LQE   A+    P+Y++  + G
Sbjct: 128 VSFDADFNTAEKVVRHLFADR-VRCADFQNQAKDGKTALQEALQARRFALPKYRIEEQIG 186

Query: 183 PDHDPRFTVVVEISGLA 199
             +D  F V  ++  L 
Sbjct: 187 HANDSMFVVSCDLGELG 203


>gi|242373525|ref|ZP_04819099.1| ribonuclease III [Staphylococcus epidermidis M23864:W1]
 gi|242348888|gb|EES40490.1| ribonuclease III [Staphylococcus epidermidis M23864:W1]
          Length = 248

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 102/216 (47%), Gaps = 11/216 (5%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           G++F N  L ++A +HSS  + +     +  ERLEFLGD +L L +S  LF+      EG
Sbjct: 25  GFSFNNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLFDKHPHLPEG 84

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
            L+    ++V   +    A ++DL   I +     K       S+ +D  E+ + ALYLD
Sbjct: 85  NLTKMRATIVCEPSLVIFANKIDLNELILLGKGEEKTGGRTRPSLISDAFEAFVGALYLD 144

Query: 130 GGIEVAGTFVDK----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
            G+E    F +K    Y +   L       D KT+ QE+ H +      Y++    GP H
Sbjct: 145 QGLETVWAFAEKVIFPYVEDNELVG---VVDFKTQFQEFVHRQNKGDVTYRLIKEEGPAH 201

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              FT  V +   A A+G   +K+ +EQ AA +  K
Sbjct: 202 HRLFTSEVILENKAVAEGKGKTKKESEQKAAEQAYK 237


>gi|315648181|ref|ZP_07901282.1| ribonuclease III [Paenibacillus vortex V453]
 gi|315276827|gb|EFU40170.1| ribonuclease III [Paenibacillus vortex V453]
          Length = 232

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/220 (34%), Positives = 109/220 (49%), Gaps = 7/220 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSI--SHSYQESY--ERLEFLGDRILGLLISTLLFNHFD 64
           L+ ++   F N  LL++A TH+S    H + +S   ERLEFLGD +L L +S  L+N F 
Sbjct: 8   LQHKLQIQFRNAMLLKQAFTHASYVNEHRFSQSQDNERLEFLGDAVLELTVSEFLYNLFP 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGEL+    ++V   +  Q A  LD   ++ +             ++ ADV ES + 
Sbjct: 68  DRPEGELTKLRAAIVCEPSLVQFAVGLDFGRYVLLGKGEEMTGGRTRPALLADVFESFVG 127

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWA-HAKFGVTPEYKVTFRSG 182
           ALYLD G+E    F+  +       +G+ +  D KTELQE   H   G   EY++    G
Sbjct: 128 ALYLDQGLEAVRRFLSDHVFPSVTVNGRPQMSDYKTELQELTQHHGMGAL-EYRIVEERG 186

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           P H+  F   V +      +G   SK+ AEQ AAA  LK+
Sbjct: 187 PAHEREFVSEVYMGSECLGRGSGRSKKEAEQQAAAVALKQ 226


>gi|289705863|ref|ZP_06502243.1| ribonuclease III [Micrococcus luteus SK58]
 gi|289557406|gb|EFD50717.1| ribonuclease III [Micrococcus luteus SK58]
          Length = 244

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 103/199 (51%), Gaps = 5/199 (2%)

Query: 23  LEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
           LE+ALTH S ++      + ERLEFLGD +LG +++  +F  +    EG+L+ R  ++VS
Sbjct: 32  LERALTHRSFAYEQGGLPTNERLEFLGDSVLGYVVTDHIFTVYPDLAEGDLARRRAAVVS 91

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140
               ++VAR + +  F+R+ +  R+   +   SI AD +E+LI A+Y+D G   A   V 
Sbjct: 92  TRALAKVARRIGIGPFVRLGTGERRTGGADKDSILADTLEALIGAVYVDHGAVAAAALVH 151

Query: 141 KYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
           ++      +    R   D KT + E A ++ G+          GP HDPR+   + +   
Sbjct: 152 RHVVPLLDEPDLLRESTDWKTVVAEAA-SRHGLGAVRYAIEGQGPAHDPRYRATLVVGER 210

Query: 199 APAQGMDCSKRAAEQVAAA 217
                +  SK+ AE+ AAA
Sbjct: 211 EYDSAVASSKKQAERDAAA 229


>gi|298369788|ref|ZP_06981104.1| ribonuclease III [Neisseria sp. oral taxon 014 str. F0314]
 gi|298281248|gb|EFI22737.1| ribonuclease III [Neisseria sp. oral taxon 014 str. F0314]
          Length = 302

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 108/206 (52%), Gaps = 10/206 (4%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           +  +++R+G+ F    LL++ALTH S +    ++ ER EF+GD IL   I+ +LF+ F  
Sbjct: 74  HQAIQRRLGHKFVRIELLQQALTHRSFN---AKNNERFEFVGDAILNYSIAKMLFDAFPK 130

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    +LV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 131 LTEGELSRLRANLVNEHVLAEIALEMNIGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 190

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +  D G   A   V   + +R +K   F+   +D KT LQE   A+    P+Y++  + G
Sbjct: 191 VSFDAGFAAAEEVVRHLFAER-VKRVDFKNQGKDNKTVLQEALQARHLPLPKYRIEEQVG 249

Query: 183 PDHDPRFTV---VVEISGLAPAQGMD 205
              D RF V   + E+  +  AQG +
Sbjct: 250 GVKDSRFVVSCDLGELGFICRAQGTN 275


>gi|293399592|ref|ZP_06643745.1| ribonuclease III [Neisseria gonorrhoeae F62]
 gi|291610161|gb|EFF39283.1| ribonuclease III [Neisseria gonorrhoeae F62]
          Length = 267

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 103/197 (52%), Gaps = 7/197 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F  
Sbjct: 39  HTAIQKKLGYAFRDMSLLRRALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 95

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 96  LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSSGFRRPSILADAMEAMFAA 155

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +  D     A   V   + +R ++   F+   +D KT LQE   A+    P+Y++  + G
Sbjct: 156 VSFDADFNTAEKVVRHLFAER-VRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIG 214

Query: 183 PDHDPRFTVVVEISGLA 199
              D  F +  ++  L 
Sbjct: 215 HADDSMFVISCDLGELG 231


>gi|54026155|ref|YP_120397.1| ribonuclease III [Nocardia farcinica IFM 10152]
 gi|81373706|sp|Q5YS08|RNC_NOCFA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|54017663|dbj|BAD59033.1| putative RNase III [Nocardia farcinica IFM 10152]
          Length = 240

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/204 (35%), Positives = 104/204 (50%), Gaps = 10/204 (4%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL  ALTH S ++      + ERLEFLGD +LGL I+  L++      EGEL+    S+V
Sbjct: 29  LLRLALTHRSYAYENGGLPTNERLEFLGDSVLGLSITERLYHEHPDKSEGELAKLRASVV 88

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSF---MTSIQADVVESLIAALYLDGGIEVAG 136
           +    ++VAR L            + +  +      SI AD +ESL+ A++L  GI+VA 
Sbjct: 89  NMHALAEVARGLGEGGLGAHLLLGKGEELTGGRDKPSILADGMESLLGAVHLQHGIDVAR 148

Query: 137 TFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
             V + +    +R  + G    D KT LQE    +    P Y+++  +GPDHD  FT   
Sbjct: 149 GVVLRLFADLLERGPRMGAG-LDWKTSLQELTAERGLGVPSYEIS-STGPDHDKEFTATT 206

Query: 194 EISGLAPAQGMDCSKRAAEQVAAA 217
            I G A  QG+  SK+ AEQ AA 
Sbjct: 207 VIGGRAYGQGVGRSKKEAEQKAAG 230


>gi|119489618|ref|ZP_01622378.1| Ribonuclease III [Lyngbya sp. PCC 8106]
 gi|119454530|gb|EAW35678.1| Ribonuclease III [Lyngbya sp. PCC 8106]
          Length = 233

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 106/214 (49%), Gaps = 13/214 (6%)

Query: 25  KALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHF-DSAKEGELSVRFNSLVS 80
           +ALTH S  + +    ++ ERLEFLGD +LG L+  LL+ ++ +   E +++    +LV 
Sbjct: 15  RALTHRSYVNEHPGDGKNNERLEFLGDAVLGFLVGELLYTYYPEELSEAKMTRLRAALVD 74

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140
            +   + A +L +   +R+     KD      ++ +D  E+ I A YLD GIE    F+ 
Sbjct: 75  EQQLGKFAAQLGIGEIMRLGKGAIKDGGYQNPALLSDTFEAYIGAYYLDAGIEKVREFIT 134

Query: 141 KYWKQRAL---------KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
             + + A          K+ +   D+K   Q+WA A+FG  P+Y +  +SGPDH   F  
Sbjct: 135 PLFTKVANEILGMHTEEKNSEHLIDSKNRFQQWALAEFGENPKYFIIDQSGPDHAKEFIA 194

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            V +       G    K+ A++ AA   LK+ GI
Sbjct: 195 EVRVKDQVYGLGQGRRKQDAQKKAAEAALKKLGI 228


>gi|325131860|gb|EGC54560.1| ribonuclease III [Neisseria meningitidis M6190]
 gi|325137910|gb|EGC60485.1| ribonuclease III [Neisseria meningitidis ES14902]
          Length = 239

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 103/197 (52%), Gaps = 7/197 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F  
Sbjct: 11  HAAIQKKLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 67

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 68  LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +  D     A   V   +  R ++   F+   +D KT LQE   A+    P+Y++  + G
Sbjct: 128 VSFDADFNTAEKVVRHLFADR-VRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIG 186

Query: 183 PDHDPRFTVVVEISGLA 199
             +D  F V  ++  L 
Sbjct: 187 HANDSMFVVSCDLGELG 203


>gi|256832889|ref|YP_003161616.1| ribonuclease III [Jonesia denitrificans DSM 20603]
 gi|256686420|gb|ACV09313.1| ribonuclease III [Jonesia denitrificans DSM 20603]
          Length = 241

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/200 (36%), Positives = 100/200 (50%), Gaps = 7/200 (3%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL  ALTH S +H      + ERLEFLGD +LGL+ +  LF       EG+L+    + V
Sbjct: 27  LLVLALTHRSFAHEAGGIPTNERLEFLGDAVLGLVSAEALFRGHPDRPEGDLARMRAATV 86

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
           S    +Q AR L+L S+I +     +   +   SI +D VE++I A+Y+  G+E A  FV
Sbjct: 87  SQRPLAQAARTLNLGSYILLGKGESRTGGADKDSILSDTVEAIIGAVYVTHGLETAREFV 146

Query: 140 DKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVT-PEYKVTFRSGPDHDPRFTVVVEIS 196
            +   +   ++       D KT +QE   A+ G   P Y  T + GPDH   FT  V I 
Sbjct: 147 HRLLGETMREAATMGAGLDWKTAIQELC-AQLGYPQPTYDFTSQ-GPDHARVFTSTVVIE 204

Query: 197 GLAPAQGMDCSKRAAEQVAA 216
                 G   SK+ AEQ AA
Sbjct: 205 DRRYGSGEGTSKKLAEQQAA 224


>gi|71894685|ref|YP_278793.1| dsRNA-specific ribonuclease III [Mycoplasma synoviae 53]
 gi|90101629|sp|Q4A589|RNC_MYCS5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|71851473|gb|AAZ44082.1| dsRNA-specific ribonuclease III [Mycoplasma synoviae 53]
          Length = 231

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/216 (32%), Positives = 111/216 (51%), Gaps = 20/216 (9%)

Query: 17  FANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
           + N  L  +A TH + S   + S  YERLEFLGD ++G LIS      F S + GELS  
Sbjct: 23  YKNIDLFIEATTHKTYSKVNKNSKDYERLEFLGDSLVGFLISDYCVREFSSLEPGELSRL 82

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
            + LV      ++A++L +   I+      ++     +++ +DVVE+LIAA+YLD G++ 
Sbjct: 83  RSKLVDKLALFKIAQKLKVEQIIKTGPKKARNEVLSSSNVLSDVVEALIAAIYLDQGMQS 142

Query: 135 AGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEY-------KVTFRSGPDHD 186
           A  F+  ++ + A K+  K  +D K+ELQE+       T +Y       K +F S   H 
Sbjct: 143 AKDFIKSHFYEIANKAQNKPNKDPKSELQEYFQTISAETVKYETIEIPNKRSFESKAWH- 201

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                + +I G     G+  SK+ AE+ AAA  L +
Sbjct: 202 -----LNKIYGT----GVGLSKKDAEKNAAANALSK 228


>gi|323142424|ref|ZP_08077250.1| ribonuclease III [Phascolarctobacterium sp. YIT 12067]
 gi|322413117|gb|EFY04010.1| ribonuclease III [Phascolarctobacterium sp. YIT 12067]
          Length = 239

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 106/216 (49%), Gaps = 9/216 (4%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQE-----SYERLEFLGDRILGLLISTLLFNHFDSAK 67
           +G    +  LL+ ALTH+S +H  ++       ER+EFLGD +L +++ST ++ +F    
Sbjct: 16  LGIHMHDLELLDMALTHTSYAHEAKQYPKPHHNERIEFLGDSVLSVIVSTYMYKNFPDLA 75

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG+L+     LV   +  + A+++ L  ++++             SI AD  ES++ A+Y
Sbjct: 76  EGQLTKLRAYLVCEGSLYEYAKKIHLGDYLQLGKGEELSGGRERPSILADAFESVLGAIY 135

Query: 128 LDGGIEVAGTFVDKYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           LD G EV   ++    +       + G F  D KT LQE+          Y +   +GP+
Sbjct: 136 LDQGFEVVQAYLLGMMQSEIDFICRHGIF-NDYKTRLQEYLQRDGDADIHYVLLGSTGPE 194

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           H+  FT  V +      +G   +K+ +EQ AA + L
Sbjct: 195 HNKVFTSQVMLGNTVIGEGSGRTKKDSEQHAAKQAL 230


>gi|268598421|ref|ZP_06132588.1| ribonuclease III [Neisseria gonorrhoeae MS11]
 gi|291044414|ref|ZP_06570123.1| ribonuclease III [Neisseria gonorrhoeae DGI2]
 gi|268582552|gb|EEZ47228.1| ribonuclease III [Neisseria gonorrhoeae MS11]
 gi|291011308|gb|EFE03304.1| ribonuclease III [Neisseria gonorrhoeae DGI2]
          Length = 267

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 103/197 (52%), Gaps = 7/197 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F  
Sbjct: 39  HTAIQKKLGYAFRDMSLLRRALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 95

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 96  LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 155

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +  D     A   V   + +R ++   F+   +D KT LQE   A+    P+Y++  + G
Sbjct: 156 VSFDADFNTAEKVVRHLFAER-VRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIG 214

Query: 183 PDHDPRFTVVVEISGLA 199
              D  F +  ++  L 
Sbjct: 215 HADDSMFVISCDLGELG 231


>gi|311742943|ref|ZP_07716751.1| ribonuclease III [Aeromicrobium marinum DSM 15272]
 gi|311313623|gb|EFQ83532.1| ribonuclease III [Aeromicrobium marinum DSM 15272]
          Length = 232

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/218 (34%), Positives = 106/218 (48%), Gaps = 12/218 (5%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTL 58
           M ALR       +G    +  LL  ALTH S ++   +  + ERLEFLGD +LGL+++  
Sbjct: 1   MDALR-----DVLGVPDLDPELLRHALTHRSYAYENGQIPNNERLEFLGDSVLGLVVTDS 55

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF       EG+L+    ++VSA+  + VAR L +   +R+             SI +D 
Sbjct: 56  LFRAHPDLPEGQLAKLRAAVVSAKALAVVARTLGIGDVVRLGRGEETTGGRDKASILSDT 115

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEW-AHAKFGVTPEY 175
           VE++I A++L  GIE A   V + +      +       D KT LQE  AH   GV P Y
Sbjct: 116 VEAVIGAVFLQFGIERAAEVVHRVFDPVMADAASLGAALDWKTSLQEMAAHHGLGV-PRY 174

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            +   +GPDH   FT  V +     A G   SK+ AEQ
Sbjct: 175 HLEG-TGPDHARSFTAEVHLGERVFAGGAGRSKKEAEQ 211


>gi|57866684|ref|YP_188382.1| ribonuclease III [Staphylococcus epidermidis RP62A]
 gi|242242516|ref|ZP_04796961.1| ribonuclease III [Staphylococcus epidermidis W23144]
 gi|73917583|sp|Q5HPV8|RNC_STAEQ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|57637342|gb|AAW54130.1| ribonuclease III [Staphylococcus epidermidis RP62A]
 gi|242234024|gb|EES36336.1| ribonuclease III [Staphylococcus epidermidis W23144]
 gi|319401475|gb|EFV89685.1| ribonuclease III [Staphylococcus epidermidis FRI909]
          Length = 245

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 106/225 (47%), Gaps = 11/225 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           +++   K +G  F N  L ++A +HSS  + +     E  ERLEFLGD +L L +S  LF
Sbjct: 16  KFTDKMKSLGLHFKNIDLYQQAFSHSSFINDFNMNRLEHNERLEFLGDAVLELTVSRYLF 75

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           +      EG L+    ++V   +    A ++ L   I +     K       S+ +D  E
Sbjct: 76  DRHPHLPEGNLTKMRATIVCEPSLVIFANKIKLNELILLGKGEEKTGGRTRPSLISDAFE 135

Query: 121 SLIAALYLDGGIEVAGTFVDK----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           + + ALYLD G++   TF +K    Y +   L       D KT+ QE+ H++      Y+
Sbjct: 136 AFVGALYLDQGLDTVWTFAEKVIFPYVEDDELVG---VVDFKTQFQEYVHSQNKGDVTYQ 192

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +    GP H   FT  V +   A A+G   +K+ +EQ AA +  K
Sbjct: 193 LIKEEGPAHHRLFTSEVILENKAVAEGKGKTKKESEQKAAEQAYK 237


>gi|29748104|gb|AAH50057.1| Rnasen protein [Mus musculus]
          Length = 705

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 113/228 (49%), Gaps = 12/228 (5%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
           + +  E+ IG  F +  LL +A T  ++  +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 437 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 496

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    E  L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 497 FPDHHERHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 555

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEW-----AHAKFGVTPE 174
           IAALY+D  +E   TF++  +  R LK     +   D K++LQ+         K    P 
Sbjct: 556 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPL 614

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           YK     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 615 YKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 662



 Score = 56.6 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
           T S I+H+     ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +
Sbjct: 289 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 343

Query: 88  ARELDLASFIRVSSDLRKDVCSF--MTSIQADVVESLIAALYLDGGIEVA 135
           A++L+L  F+  +     D+CS   +    A+  E+LI A+YL+G +E A
Sbjct: 344 AKKLELDRFMLYAHG--PDLCSESDLRHAMANCFEALIGAVYLEGSLEEA 391


>gi|5579373|gb|AAD45518.1|AF160248_1 ribonuclease [Caenorhabditis elegans]
          Length = 860

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 109/218 (50%), Gaps = 15/218 (6%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHF 63
           +  LE+R+G  F N  LL KA T  +I ++   +   +RLE+LGD +L L++S  L+  F
Sbjct: 607 FHALEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEWLGDSVLQLIVSDFLYRRF 666

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG +S+   SLVS +T + V  +L    F+ + +  +          +AD+VE+ I
Sbjct: 667 PYHHEGHMSLLRTSLVSNQTQAVVCDDLGFTEFV-IKAPYK--TPELKLKDKADLVEAFI 723

Query: 124 AALYLDGGIEVAGTFVDKYWKQRA---LKSGKFRRDAKTELQEWAHAKFGVT------PE 174
            ALY+D GIE    F+   +  R    ++S K+  DAK+ LQ+W  A    +      PE
Sbjct: 724 GALYVDRGIEHCRAFIRIVFCPRLKHFIESEKW-NDAKSHLQQWCLAMRDPSSSEPDMPE 782

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           Y+V    GP ++  F + V   G   A   + +   AE
Sbjct: 783 YRVLGIEGPTNNRIFKIAVYYKGKRLASAAESNVHKAE 820



 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 6/113 (5%)

Query: 41  ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
           ERLE+LGD ++ L++S  L+       EG L+    +LV     + +A+   +   ++ S
Sbjct: 465 ERLEYLGDAVVELIVSHHLYFMLTHHFEGGLATYRTALVQNRNLATLAKNCRIDEMLQYS 524

Query: 101 --SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK--YWKQRALK 149
             +DL  +V  F  ++ A+  E+++AA+YLDGG+        K  Y  Q  LK
Sbjct: 525 HGADL-INVAEFKHAL-ANAFEAVMAAIYLDGGLAPCDVIFSKAMYGHQPVLK 575


>gi|7499923|pir||T21419 hypothetical protein F26E4.13 - Caenorhabditis elegans
          Length = 412

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 109/218 (50%), Gaps = 15/218 (6%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHF 63
           +  LE+R+G  F N  LL KA T  +I ++   +   +RLE+LGD +L L++S  L+  F
Sbjct: 162 FHALEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEWLGDSVLQLIVSDFLYRRF 221

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG +S+   SLVS +T + V  +L    F+ + +  +          +AD+VE+ I
Sbjct: 222 PYHHEGHMSLLRTSLVSNQTQAVVCDDLGFTEFV-IKAPYKTPELKLKD--KADLVEAFI 278

Query: 124 AALYLDGGIEVAGTFVDKYWKQRA---LKSGKFRRDAKTELQEWAHAKFGVT------PE 174
            ALY+D GIE    F+   +  R    ++S K+  DAK+ LQ+W  A    +      PE
Sbjct: 279 GALYVDRGIEHCRAFIRIVFCPRLKHFIESEKW-NDAKSHLQQWCLAMRDPSSSEPDMPE 337

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           Y+V    GP ++  F + V   G   A   + +   AE
Sbjct: 338 YRVLGIEGPTNNRIFKIAVYYKGKRLASAAESNVHKAE 375



 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 6/113 (5%)

Query: 41  ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
           ERLE+LGD ++ L++S  L+       EG L+    +LV     + +A+   +   ++ S
Sbjct: 20  ERLEYLGDAVVELIVSHHLYFMLTHHFEGGLATYRTALVQNRNLATLAKNCRIDEMLQYS 79

Query: 101 --SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK--YWKQRALK 149
             +DL  +V  F  ++ A+  E+++AA+YLDGG+        K  Y  Q  LK
Sbjct: 80  HGADL-INVAEFKHAL-ANAFEAVMAAIYLDGGLAPCDVIFSKAMYGHQPVLK 130


>gi|312140459|ref|YP_004007795.1| ribonuclease iii [Rhodococcus equi 103S]
 gi|325675924|ref|ZP_08155607.1| ribonuclease III [Rhodococcus equi ATCC 33707]
 gi|311889798|emb|CBH49115.1| ribonuclease III [Rhodococcus equi 103S]
 gi|325553162|gb|EGD22841.1| ribonuclease III [Rhodococcus equi ATCC 33707]
          Length = 256

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 103/206 (50%), Gaps = 14/206 (6%)

Query: 22  LLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL  ALTH S +  H    + ERLEFLGD +LGL I+  L+       EGEL+    S+V
Sbjct: 32  LLTLALTHRSYAYEHGGLPTNERLEFLGDSVLGLTITERLYTAHPEKSEGELAKIRASIV 91

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSF---MTSIQADVVESLIAALYLDGGIEVA- 135
           +    ++VAR L            + +  +      SI AD +ESL+ A++L+ GI+ A 
Sbjct: 92  NMHALAEVARGLGPGGLGAHLLLGKGEEMTGGRDKPSILADGMESLLGAIHLEHGIDTAR 151

Query: 136 ----GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
                 F D   +   L +G    D KT LQE    +    P Y++T  +GPDHD  FT 
Sbjct: 152 RVVLDLFADLLSRAPKLGAG---LDWKTSLQELTAERGIGVPSYEIT-ATGPDHDKEFTA 207

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAA 217
            V + G A   G+  SK+ AEQ AA+
Sbjct: 208 TVVVGGDAFGVGVGRSKKEAEQKAAS 233


>gi|24637290|gb|AAN63637.1|AF440766_1 ribonuclease III [Mus musculus]
          Length = 541

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 113/233 (48%), Gaps = 22/233 (9%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALT-------HSSISHSYQESYERLEFLGDRILGLLIST 57
           + +  E+ IG  F +  LL +A T       H ++ H+     +R+EFLGD I+ L+ + 
Sbjct: 273 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHN-----QRMEFLGDSIMQLVATE 327

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF HF    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD
Sbjct: 328 YLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLAD 386

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWA-----HAKF 169
           + ES IAALY+D  +E   TF++  +  R LK     +   D K++LQ+         K 
Sbjct: 387 LWESFIAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKE 445

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              P YK     GP H   + V V   G     G   S + AE  AA + L++
Sbjct: 446 PDIPLYKTLQTVGPSHARTYPVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 498



 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
           T S I+H+     ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +
Sbjct: 125 TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAMVQNQHLAML 179

Query: 88  ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135
           A++L+L  F+  +     D+C  S +    A+  E+LI A+YL+G +E A
Sbjct: 180 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 227


>gi|167755900|ref|ZP_02428027.1| hypothetical protein CLORAM_01417 [Clostridium ramosum DSM 1402]
 gi|237734864|ref|ZP_04565345.1| ribonuclease III [Mollicutes bacterium D7]
 gi|167704839|gb|EDS19418.1| hypothetical protein CLORAM_01417 [Clostridium ramosum DSM 1402]
 gi|229382192|gb|EEO32283.1| ribonuclease III [Coprobacillus sp. D7]
          Length = 226

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 106/216 (49%), Gaps = 4/216 (1%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           +++   + N  + ++A TH S ++  +     YERLEFLGD +L   +S  +F+ +    
Sbjct: 8   QKMEIPYQNIEIFKEAFTHPSYANENKMKNHDYERLEFLGDAVLQYHVSRHIFDLYPELP 67

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG L+     LV  E+ ++ ARELDL   I + +    +      S+ AD+ E+ + A+ 
Sbjct: 68  EGRLTKLRAKLVREESLARFARELDLGPLIYLGAGELNNGGRDRDSVLADIFEAFMGAIC 127

Query: 128 LDGGIEVAGTFVD-KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
            D G E     +D   +K     +     D KT+LQE   A    T  Y +   SGP ++
Sbjct: 128 HDCGPEYVEKMLDITIYKHVEDVNYDEITDFKTKLQELIQADQRKTVTYDLISSSGPSNN 187

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           P F + V++  +    G+  SK+ AEQ AA + L +
Sbjct: 188 PVFEMAVKMDEMVLGVGVGSSKKRAEQQAAKDALNK 223


>gi|218291547|ref|ZP_03495421.1| Ribonuclease III [Alicyclobacillus acidocaldarius LAA1]
 gi|258511329|ref|YP_003184763.1| ribonuclease III [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|218238642|gb|EED05867.1| Ribonuclease III [Alicyclobacillus acidocaldarius LAA1]
 gi|257478055|gb|ACV58374.1| ribonuclease III [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 241

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 97/205 (47%), Gaps = 5/205 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
           L+  +   F + +LL++A TH+S  + ++    E  ERLEFLGD +L L++S  L+  + 
Sbjct: 8   LQGLLNLQFNDVNLLKQAFTHASYRNEHRKLHVEDNERLEFLGDAVLELVVSDFLYRTYP 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGEL+    ++V   +  + A+ L    +IR+     +       ++ ADV E+ + 
Sbjct: 68  KMPEGELTRMRAAIVCEASLVRFAKRLSFDQYIRLGRGEERSGGRSRPALLADVFEAFLG 127

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           ALYLD G+E    FV  +     L       D KT LQE    +      Y +    GP 
Sbjct: 128 ALYLDQGLEAVRQFVHTHMVP-YLPDVSAGLDYKTALQELVQQRHQTPVRYVIVEERGPA 186

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKR 209
           H   F V VE+ G     G+  SK+
Sbjct: 187 HAREFVVQVELGGEVRGVGIGRSKK 211


>gi|317420155|emb|CBN82191.1| Ribonuclease 3 [Dicentrarchus labrax]
          Length = 1569

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/208 (32%), Positives = 104/208 (50%), Gaps = 22/208 (10%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALT-------HSSISHSYQESYERLEFLGDRILGLLIST 57
            + ++ E  IG  F +  LL +A T       H ++ H+     +R+EFLGD I+ L+ + 
Sbjct: 1359 KLTSFEDSIGVLFTHVRLLARAFTLRTVGFNHLTLGHN-----QRMEFLGDSIMQLVATE 1413

Query: 58   LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
             LF HF    EG L++  +SLV+  T ++VA EL +  F  +++D  K   +  T   AD
Sbjct: 1414 YLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQDFA-ITNDKTKRPVALRTKTLAD 1472

Query: 118  VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWA-----HAKF 169
            ++ES IAALY+D  +E   TF++  +  R LK     +   D K++LQ+         K 
Sbjct: 1473 LLESFIAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQCCLTLRTEGKE 1531

Query: 170  GVTPEYKVTFRSGPDHDPRFTVVVEISG 197
               P YK     GP H   +TV V   G
Sbjct: 1532 PDIPLYKTLQTVGPSHARTYTVAVYFKG 1559



 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 71/186 (38%), Gaps = 59/186 (31%)

Query: 9    LEKRIGYAFANRSLLEKALTHSS------------------------------ISHSYQ- 37
            L+K IGY F  R LL+ A+TH S                              + H Y  
Sbjct: 939  LDKLIGYVFKERCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMYMR 998

Query: 38   ------------------------ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
                                       ERLEFLGD ++  L S  L+  F S +EG L+ 
Sbjct: 999  KKGINTLINIMSRLGQDDPSPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLAT 1058

Query: 74   RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGG 131
               ++V  +  + +A++L+L  F+  +     D+C  S +    A+  E+LI    L   
Sbjct: 1059 YRTAIVQNQHLAMLAKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIEHFLLTRQ 1116

Query: 132  IEVAGT 137
             ++A T
Sbjct: 1117 TQIAHT 1122


>gi|300858757|ref|YP_003783740.1| ribonuclease III [Corynebacterium pseudotuberculosis FRC41]
 gi|300686211|gb|ADK29133.1| ribonuclease III [Corynebacterium pseudotuberculosis FRC41]
 gi|302206463|gb|ADL10805.1| Ribonuclease III [Corynebacterium pseudotuberculosis C231]
 gi|302331018|gb|ADL21212.1| Ribonuclease III [Corynebacterium pseudotuberculosis 1002]
 gi|308276705|gb|ADO26604.1| Ribonuclease III [Corynebacterium pseudotuberculosis I19]
          Length = 249

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/218 (34%), Positives = 111/218 (50%), Gaps = 8/218 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61
           + Y++L   +G     R LL  ALTH S ++      + ERLEFLGD +LGL +++ L+ 
Sbjct: 21  INYASLIDSLGIDIP-RDLLMLALTHRSFANENGSLPNNERLEFLGDAVLGLSVASKLYE 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + S  E ++S    S+VS    + +ARE+ L SFI +             SI AD  E+
Sbjct: 80  QYPSRAESDISKMRASIVSRYGLADIAREIKLGSFILLGKGELMTNGRDKESILADTTEA 139

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGK---FRRDAKTELQEWAHAKFGVTPEYKVT 178
           L+ A+YL  G EVA   V + + QR + +       +D KT LQE A  +    P Y  +
Sbjct: 140 LLGAIYLAHGFEVARNTVLRLF-QRKIDTASAVGMHQDWKTTLQERAAERKLPIPVYTAS 198

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             +GP+H   FT VV +      +G   +K+ AEQ AA
Sbjct: 199 -STGPEHSQIFTAVVTVGTTVLGEGTGPNKKLAEQAAA 235


>gi|160915457|ref|ZP_02077668.1| hypothetical protein EUBDOL_01465 [Eubacterium dolichum DSM 3991]
 gi|158432577|gb|EDP10866.1| hypothetical protein EUBDOL_01465 [Eubacterium dolichum DSM 3991]
          Length = 227

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 109/217 (50%), Gaps = 6/217 (2%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTLLFNHFDSAK 67
           K+ G    N+  + +ALTHSS  + ++ S    ERLEF+GD +L L  +  LF+   +  
Sbjct: 9   KQRGIQIENKERMVEALTHSSYVNEHKASKHDNERLEFMGDAVLQLWSTRKLFHLTPALS 68

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG+++     LV  E  +   R L    ++ +     K       S+ AD+ E+++ A+Y
Sbjct: 69  EGQMTTLRAQLVCEEALAAYNRTLGWGKYLLLGVGEEKTGGRNRDSLLADMFEAVLGAIY 128

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           LD G+E     ++      A+   K     D KT+LQE+  A       Y++   SGP +
Sbjct: 129 LDQGMEAVDIILESVLTP-AITQPKSESVIDYKTKLQEYIQADTRKNVHYELVSTSGPSN 187

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            P F V+V++  +   +G+  SK+ AEQ+AA +  ++
Sbjct: 188 APIFEVIVKLEDIIMGKGVGNSKKRAEQMAAKDAFEK 224


>gi|121634484|ref|YP_974729.1| ribonuclease III [Neisseria meningitidis FAM18]
 gi|120866190|emb|CAM09930.1| putative ribonuclease III [Neisseria meningitidis FAM18]
          Length = 267

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 103/197 (52%), Gaps = 7/197 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F  
Sbjct: 39  HAAIQKKLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 95

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 96  LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 155

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +  D     A   V   +  R ++   F+   +D KT LQE   A+    P+Y++  + G
Sbjct: 156 VSFDADFNTAEKVVRHLFADR-VRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIG 214

Query: 183 PDHDPRFTVVVEISGLA 199
             +D  F V  ++  L 
Sbjct: 215 HANDSMFVVSCDLGELG 231


>gi|284045141|ref|YP_003395481.1| ribonuclease III [Conexibacter woesei DSM 14684]
 gi|283949362|gb|ADB52106.1| ribonuclease III [Conexibacter woesei DSM 14684]
          Length = 223

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 100/206 (48%), Gaps = 7/206 (3%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK--EGELSVRFNSLVSAE 82
           +  THSS +    +SYERL FLGD +LGL ++T L+   ++ +   G L+      VS  
Sbjct: 18  QVFTHSSWTDRRADSYERLAFLGDSVLGLAVTTHLYPRLEADRYGAGRLTKIRAQAVSGR 77

Query: 83  TCSQVARELDLASFIRVSSD----LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138
           +C +VA  L +   +R ++        D       + A V+E++I A+YLD G E     
Sbjct: 78  SCMEVAERLGVPERLRAAAPQGVGQNADALVRTERVLASVIEAVIGAVYLDNGYETTAEA 137

Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
           V + ++     + +   D K+ LQE   A+ G    Y V    GP HD  F VV E++G 
Sbjct: 138 VVEAFEPEIETALEHPVDFKSALQERL-ARRGDVVAYSVASEEGPPHDRVFEVVAEVAGN 196

Query: 199 APAQGMDCSKRAAEQVAAAEVLKREG 224
               G   SK+ AEQ AA   L+  G
Sbjct: 197 QVGSGRGRSKKDAEQEAARTALEAMG 222


>gi|319937586|ref|ZP_08011991.1| ribonuclease III [Coprobacillus sp. 29_1]
 gi|319807426|gb|EFW04035.1| ribonuclease III [Coprobacillus sp. 29_1]
          Length = 232

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/210 (33%), Positives = 102/210 (48%), Gaps = 4/210 (1%)

Query: 17  FANRSLLEKALTHSSIS---HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           F   SL ++A TH+S +   H Y + YERLEF+GD +L L +S  LF+ F    EG L+ 
Sbjct: 14  FQKLSLYKEAFTHASYANEAHHYNKDYERLEFMGDAVLQLYVSDFLFHLFPDVPEGTLTT 73

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGI 132
             + LV  E+ ++ ++EL L   + +     K       S+ A++ ES I ALYLD G  
Sbjct: 74  LRSKLVREESLARFSKELGLGELLFLGVGEEKSGGRERESVLANIFESFIGALYLDCGKD 133

Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
           EV        ++           D KT LQE   A    T  Y++   SGP + P F V 
Sbjct: 134 EVIKILEQTIFQHVNDLDYDDITDYKTTLQELIQADQRKTVTYELLETSGPSNAPEFKVA 193

Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           V +  +    G   SK+ AEQ AA + L +
Sbjct: 194 VIMDEMRLGVGKGTSKKRAEQQAAKDALNK 223


>gi|163941587|ref|YP_001646471.1| ribonuclease III [Bacillus weihenstephanensis KBAB4]
 gi|229013032|ref|ZP_04170197.1| Ribonuclease 3 [Bacillus mycoides DSM 2048]
 gi|229134657|ref|ZP_04263466.1| Ribonuclease 3 [Bacillus cereus BDRD-ST196]
 gi|229564349|sp|A9VT87|RNC_BACWK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|163863784|gb|ABY44843.1| Ribonuclease III [Bacillus weihenstephanensis KBAB4]
 gi|228648703|gb|EEL04729.1| Ribonuclease 3 [Bacillus cereus BDRD-ST196]
 gi|228748286|gb|EEL98146.1| Ribonuclease 3 [Bacillus mycoides DSM 2048]
          Length = 245

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 109/223 (48%), Gaps = 7/223 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +   ++ IG  F +  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 19  FKVFQEEIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A E+   S + +             ++ ADV E+
Sbjct: 79  KYPTMSEGELTKLRAAIVCEPSLVRFANEMSFGSLVLLGKGEEMTGGRERPALLADVFEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179
            I ALYLD G+E    ++ +    + +  G F    D K++LQE          EY++  
Sbjct: 139 FIGALYLDQGLETVWGYLKEVVYPK-INEGAFSHVMDYKSQLQELIQRDGSGNVEYQILQ 197

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             GP H+  F   V ++  A   G   SK+ AEQ AAAE LK+
Sbjct: 198 EKGPAHNREFVSRVTLNNEALGLGSGKSKKEAEQQAAAEALKK 240


>gi|226313209|ref|YP_002773103.1| ribonuclease III [Brevibacillus brevis NBRC 100599]
 gi|226096157|dbj|BAH44599.1| ribonuclease III [Brevibacillus brevis NBRC 100599]
          Length = 246

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 105/213 (49%), Gaps = 7/213 (3%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58
            + ++ L++ IG+ F + S+L +A THSS  +  +       ERLEFLGD +L L +S  
Sbjct: 18  VMNFAQLQETIGFRFRDESVLRQAFTHSSYVNEQRGKRISDNERLEFLGDAVLELTVSQF 77

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L+  F    EGE++    ++V   +  + A  L+    + +             ++ ADV
Sbjct: 78  LYKTFPKMSEGEMTKLRAAIVCEPSLVKFAELLNFGDLVLLGKGEELTGGRQRPALLADV 137

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYK 176
            E+ + ALYLD G+E   +F++KY   R +  G+F +  D K++LQE+          Y+
Sbjct: 138 FEAFVGALYLDQGLEAVFSFMEKYVYPR-IDKGEFAQVTDFKSQLQEFVQQDNLGDIHYR 196

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           +    GP H+  F   V ++  +   G   SK+
Sbjct: 197 IVEEKGPAHNREFVSEVLLNNRSLGIGSGRSKK 229


>gi|300361933|ref|ZP_07058110.1| ribonuclease III [Lactobacillus gasseri JV-V03]
 gi|300354552|gb|EFJ70423.1| ribonuclease III [Lactobacillus gasseri JV-V03]
          Length = 226

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/207 (31%), Positives = 102/207 (49%), Gaps = 7/207 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           + L+++ G  F N +LLE A THSS +  H  ++ YE+LEFLGD +L L +S  L+ HF 
Sbjct: 8   NNLKEKYGIKFNNENLLEDAFTHSSYANEHPGRKDYEKLEFLGDAVLELAVSDYLYRHFP 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGEL+   +++V  E  S+ A E    + I +     K       ++  DV E+   
Sbjct: 68  RLNEGELTRMRSNIVRTEGFSEFAIECGFPAEINLGKGEEKAGARKRKTLLEDVFEAFNG 127

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           AL+LD G+     F+        +  G F   RD KTELQE       V  EY+V   + 
Sbjct: 128 ALFLDQGMPAVQHFL-HLTVYPLIAEGDFNASRDYKTELQERLQVNGPVKIEYQVI--AE 184

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209
            +  P F V + ++    ++G   +K+
Sbjct: 185 DESKPYFKVQLLVNDKKISEGQGRNKK 211


>gi|229061452|ref|ZP_04198797.1| Ribonuclease 3 [Bacillus cereus AH603]
 gi|228717875|gb|EEL69523.1| Ribonuclease 3 [Bacillus cereus AH603]
          Length = 245

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 109/223 (48%), Gaps = 7/223 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +   ++ IG  F +  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 19  FKVFQEEIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A E+   S + +             ++ ADV E+
Sbjct: 79  KYPTMSEGELTKLRAAIVCEPSLVRFANEMSFGSLVLLGKGEEMTGGRERPALLADVFEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179
            I ALYLD G+E    ++ +    + +  G F    D K++LQE          EY++  
Sbjct: 139 FIGALYLDQGLETVWGYLKEVVYPK-INEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQ 197

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             GP H+  F   V ++  A   G   SK+ AEQ AAAE LK+
Sbjct: 198 EKGPAHNREFVSRVTLNNEALGLGSGKSKKEAEQQAAAEALKK 240


>gi|210622528|ref|ZP_03293221.1| hypothetical protein CLOHIR_01169 [Clostridium hiranonis DSM 13275]
 gi|210154163|gb|EEA85169.1| hypothetical protein CLOHIR_01169 [Clostridium hiranonis DSM 13275]
          Length = 204

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/171 (35%), Positives = 87/171 (50%), Gaps = 4/171 (2%)

Query: 29  HSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQ 86
           HSS S+  ++    ER+EFLGD +LGL+IS  +F       EGEL+    ++V   + S+
Sbjct: 1   HSSYSNENKKFKYNERMEFLGDSVLGLVISDHIFKKETGVPEGELTKLRANIVCEGSLSE 60

Query: 87  VARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQR 146
            A+ + L  +I +             SI AD  E++IAA+YLDGGIE A  F+       
Sbjct: 61  AAKNIRLGDYILLGRGEEATGGRERKSILADAFEAVIAAIYLDGGIESASKFILSNLSDI 120

Query: 147 ALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
              S  GK  RD KT+LQE           YK+    GPDH+  F ++V +
Sbjct: 121 IKDSIDGKIFRDYKTQLQEEIQKNGSSNIWYKLLDEDGPDHNKTFIMMVGV 171


>gi|218767809|ref|YP_002342321.1| ribonuclease III [Neisseria meningitidis Z2491]
 gi|22654074|sp|Q9JVD3|RNC_NEIMA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|121051817|emb|CAM08123.1| putative ribonuclease III [Neisseria meningitidis Z2491]
          Length = 239

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 104/197 (52%), Gaps = 7/197 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F  
Sbjct: 11  HAAIQKKLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 67

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 68  LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +  D     A   V   + +R ++   F+   +D KT LQE   A+    P+Y++  + G
Sbjct: 128 VSFDADFNTAEKVVRHLFAER-VRRVDFQNQAKDGKTALQEALQARRFALPKYRIEEQIG 186

Query: 183 PDHDPRFTVVVEISGLA 199
             +D  F +  ++  L 
Sbjct: 187 HANDSMFVISCDLGELG 203


>gi|163840519|ref|YP_001624924.1| ribonuclease III [Renibacterium salmoninarum ATCC 33209]
 gi|162953995|gb|ABY23510.1| ribonuclease III [Renibacterium salmoninarum ATCC 33209]
          Length = 273

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/214 (34%), Positives = 104/214 (48%), Gaps = 6/214 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           L KR+G    +   L  ALTH S ++      + ERLEFLGD +LGL ++  L+      
Sbjct: 25  LLKRLGVDI-DAGTLRLALTHRSFAYENGGIPTNERLEFLGDSVLGLSVTDALYRDNPGL 83

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGEL+ R +++VS    + VAREL +  FI +             SI AD +E+L  A 
Sbjct: 84  AEGELAKRRSAVVSTRALAGVARELGVGEFILLGQGELLTDGKNKASILADTMEALFGAA 143

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           Y+   IE A   V +        +G F    D KT +QE A  +      Y+VT + GPD
Sbjct: 144 YICNDIETARQMVMRLVGPLLADAGNFGAATDWKTNIQEHAANRQLGPVRYEVTGQ-GPD 202

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           H   +  ++ I G +   G   SK+ AEQ AAA 
Sbjct: 203 HARTYQALLWIGGTSYQSGRGHSKKEAEQDAAAN 236


>gi|78183763|ref|YP_376197.1| ribonuclease III [Synechococcus sp. CC9902]
 gi|78168057|gb|ABB25154.1| RNAse III [Synechococcus sp. CC9902]
          Length = 249

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/207 (32%), Positives = 104/207 (50%), Gaps = 8/207 (3%)

Query: 21  SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
           SL+++AL H S   S  +++ERLEFLGD +L L  +  +   + +   G  S     LVS
Sbjct: 28  SLVDEALIHVSAGRS--KNFERLEFLGDAVLRLAATEFIDQQYPNLPVGRCSSLRAQLVS 85

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG--IEVAGTF 138
               +Q+  +L L SF+ +      D  +  T +QAD  E+LI A+Y   G  +E    +
Sbjct: 86  DRWLAQLGEQLQLESFLVLGPKALGDAAAQAT-LQADATEALIGAIYSGSGNNLEPIHHW 144

Query: 139 VDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEI 195
           +  +W+Q    + +     + KT LQEW+ A+    P Y  T +S    DP RF   VE+
Sbjct: 145 LTPHWQQTTADVLARPHLFNGKTMLQEWSQAEGLGLPNYTTTEQSSRHGDPERFKSRVEV 204

Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                A G   S++ AEQ AA E ++R
Sbjct: 205 GSRLSANGFGRSRKEAEQNAATEAVQR 231


>gi|17506883|ref|NP_492599.1| Ortholog of Drosophila DRoSHa gene family member (drsh-1)
            [Caenorhabditis elegans]
 gi|20141625|sp|O01326|RNC_CAEEL RecName: Full=Ribonuclease 3; AltName: Full=Protein drosha; AltName:
            Full=Ribonuclease III; Short=RNase III
 gi|15718161|emb|CAB03006.3| C. elegans protein F26E4.10a, confirmed by transcript evidence
            [Caenorhabditis elegans]
          Length = 1086

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 109/218 (50%), Gaps = 15/218 (6%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHF 63
            +  LE+R+G  F N  LL KA T  +I ++   +   +RLE+LGD +L L++S  L+  F
Sbjct: 833  FHALEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEWLGDSVLQLIVSDFLYRRF 892

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
                EG +S+   SLVS +T + V  +L    F+ + +  +          +AD+VE+ I
Sbjct: 893  PYHHEGHMSLLRTSLVSNQTQAVVCDDLGFTEFV-IKAPYK--TPELKLKDKADLVEAFI 949

Query: 124  AALYLDGGIEVAGTFVDKYWKQRA---LKSGKFRRDAKTELQEWAHAKFGVT------PE 174
             ALY+D GIE    F+   +  R    ++S K+  DAK+ LQ+W  A    +      PE
Sbjct: 950  GALYVDRGIEHCRAFIRIVFCPRLKHFIESEKW-NDAKSHLQQWCLAMRDPSSSEPDMPE 1008

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
            Y+V    GP ++  F + V   G   A   + +   AE
Sbjct: 1009 YRVLGIEGPTNNRIFKIAVYYKGKRLASAAESNVHKAE 1046



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 6/113 (5%)

Query: 41  ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
           ERLE+LGD ++ L++S  L+       EG L+    +LV     + +A+   +   ++ S
Sbjct: 691 ERLEYLGDAVVELIVSHHLYFMLTHHFEGGLATYRTALVQNRNLATLAKNCRIDEMLQYS 750

Query: 101 --SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK--YWKQRALK 149
             +DL  +V  F  ++ A+  E+++AA+YLDGG+        K  Y  Q  LK
Sbjct: 751 HGADL-INVAEFKHAL-ANAFEAVMAAIYLDGGLAPCDVIFSKAMYGHQPVLK 801


>gi|27467826|ref|NP_764463.1| RNase III [Staphylococcus epidermidis ATCC 12228]
 gi|251810663|ref|ZP_04825136.1| RNase III [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876335|ref|ZP_06285202.1| ribonuclease III [Staphylococcus epidermidis SK135]
 gi|32129970|sp|Q8CPI1|RNC_STAES RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|27315371|gb|AAO04505.1|AE016747_2 RNase III [Staphylococcus epidermidis ATCC 12228]
 gi|251805823|gb|EES58480.1| RNase III [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295360|gb|EFA87887.1| ribonuclease III [Staphylococcus epidermidis SK135]
 gi|329736334|gb|EGG72606.1| ribonuclease III [Staphylococcus epidermidis VCU028]
          Length = 245

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 106/225 (47%), Gaps = 11/225 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           +++   K +G  F N  L ++A +HSS  + +     E  ERLEFLGD +L L +S  LF
Sbjct: 16  KFTDKMKSLGLHFKNIDLYQQAFSHSSFINDFNMNRLEHNERLEFLGDAVLELTVSRYLF 75

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           +      EG L+    ++V   +    A ++ L   I +     K       S+ +D  E
Sbjct: 76  DRHPHLPEGNLTKMRATIVCEPSLVIFANKIKLNELILLGKGEEKTGGRTRPSLISDAFE 135

Query: 121 SLIAALYLDGGIEVAGTFVDK----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           + + ALYLD G++   TF +K    Y +   L       D KT+ QE+ H++      Y+
Sbjct: 136 AFVGALYLDQGLDSVWTFAEKVIFPYVEDDELVG---VVDFKTQFQEYVHSQNKGDVTYQ 192

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +    GP H   FT  V +   A A+G   +K+ +EQ AA +  K
Sbjct: 193 LIKEEGPAHHRLFTSEVILENKAVAEGKGKTKKESEQKAAEQAYK 237


>gi|193202651|ref|NP_001122460.1| Ortholog of Drosophila DRoSHa gene family member (drsh-1)
            [Caenorhabditis elegans]
 gi|159572246|emb|CAP19331.1| C. elegans protein F26E4.10b, confirmed by transcript evidence
            [Caenorhabditis elegans]
          Length = 1083

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 109/218 (50%), Gaps = 15/218 (6%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHF 63
            +  LE+R+G  F N  LL KA T  +I ++   +   +RLE+LGD +L L++S  L+  F
Sbjct: 833  FHALEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEWLGDSVLQLIVSDFLYRRF 892

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
                EG +S+   SLVS +T + V  +L    F+ + +  +          +AD+VE+ I
Sbjct: 893  PYHHEGHMSLLRTSLVSNQTQAVVCDDLGFTEFV-IKAPYK--TPELKLKDKADLVEAFI 949

Query: 124  AALYLDGGIEVAGTFVDKYWKQRA---LKSGKFRRDAKTELQEWAHAKFGVT------PE 174
             ALY+D GIE    F+   +  R    ++S K+  DAK+ LQ+W  A    +      PE
Sbjct: 950  GALYVDRGIEHCRAFIRIVFCPRLKHFIESEKW-NDAKSHLQQWCLAMRDPSSSEPDMPE 1008

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
            Y+V    GP ++  F + V   G   A   + +   AE
Sbjct: 1009 YRVLGIEGPTNNRIFKIAVYYKGKRLASAAESNVHKAE 1046



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 6/113 (5%)

Query: 41  ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
           ERLE+LGD ++ L++S  L+       EG L+    +LV     + +A+   +   ++ S
Sbjct: 691 ERLEYLGDAVVELIVSHHLYFMLTHHFEGGLATYRTALVQNRNLATLAKNCRIDEMLQYS 750

Query: 101 --SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK--YWKQRALK 149
             +DL  +V  F  ++ A+  E+++AA+YLDGG+        K  Y  Q  LK
Sbjct: 751 HGADL-INVAEFKHAL-ANAFEAVMAAIYLDGGLAPCDVIFSKAMYGHQPVLK 801


>gi|307069613|ref|YP_003878090.1| ribonuclease III [Candidatus Zinderia insecticola CARI]
 gi|306482873|gb|ADM89744.1| ribonuclease III [Candidatus Zinderia insecticola CARI]
          Length = 221

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 110/220 (50%), Gaps = 14/220 (6%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LEK + Y F N+SLL  ALTHSS S+    + E+LEFLGD IL   I+++LFN F +  E
Sbjct: 4   LEKILRYNFNNKSLLFLALTHSSYSNI---NNEKLEFLGDSILNTCITSILFNKFKNESE 60

Query: 69  GELSVRFNS-LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           G LS +F S LV  E    ++++++L +F+ + +   K+  +   SI +  +E+L  A+Y
Sbjct: 61  GFLS-KFRSYLVRREKLYNISKKINLYNFLFLGNSEIKNSGNLKISILSSTLEALFGAIY 119

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFR-----RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +D         + K +K        F      +D KT LQE         P+Y++     
Sbjct: 120 IDSDFNTINNIIYKLYK---FDINNFNIKYNIKDFKTLLQENLQKMKYFLPKYEIYKIYK 176

Query: 183 PDHDPRFTV-VVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             +   F +  + +       GM    + AEQ+AA  +LK
Sbjct: 177 LKNFQIFKIKCIFVEKNIITYGMAEKIKVAEQIAARFMLK 216


>gi|116629437|ref|YP_814609.1| dsRNA-specific ribonuclease [Lactobacillus gasseri ATCC 33323]
 gi|238852587|ref|ZP_04642997.1| ribonuclease III [Lactobacillus gasseri 202-4]
 gi|282850853|ref|ZP_06260227.1| ribonuclease III [Lactobacillus gasseri 224-1]
 gi|311110915|ref|ZP_07712312.1| ribonuclease III [Lactobacillus gasseri MV-22]
 gi|116095019|gb|ABJ60171.1| RNAse III [Lactobacillus gasseri ATCC 33323]
 gi|238834733|gb|EEQ26960.1| ribonuclease III [Lactobacillus gasseri 202-4]
 gi|282557805|gb|EFB63393.1| ribonuclease III [Lactobacillus gasseri 224-1]
 gi|311066069|gb|EFQ46409.1| ribonuclease III [Lactobacillus gasseri MV-22]
          Length = 226

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/206 (32%), Positives = 101/206 (49%), Gaps = 7/206 (3%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            L+++ G  F N +LLE A THSS +  H  ++ YE+LEFLGD +L L +S  L+ HF  
Sbjct: 9   NLKEKYGIKFNNENLLEDAFTHSSYANEHPGRKDYEKLEFLGDAVLELAVSDYLYRHFPR 68

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGEL+   +++V  E  S+ A E    + I +     K       ++  DV E+   A
Sbjct: 69  LNEGELTRMRSNIVRTEGFSEFAIECGFPAEINLGKGEEKAGARKRKTLLEDVFEAFNGA 128

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           L+LD G+     F+        +  G F   RD KTELQE       V  EY+V   +  
Sbjct: 129 LFLDQGMPAVQHFL-HLTVYPLIAEGDFNASRDYKTELQERLQVNGPVKIEYQVI--AED 185

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKR 209
           +  P F V + ++    ++G   +K+
Sbjct: 186 ESKPSFKVQLLVNDKKISEGQGRNKK 211


>gi|271969197|ref|YP_003343393.1| ribonuclease III [Streptosporangium roseum DSM 43021]
 gi|270512372|gb|ACZ90650.1| Ribonuclease III [Streptosporangium roseum DSM 43021]
          Length = 243

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/177 (33%), Positives = 94/177 (53%), Gaps = 5/177 (2%)

Query: 21  SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           ++LE+A+TH S ++      + ERLEFLGD +LGL+++  L+ +     EG+L+    ++
Sbjct: 28  AILERAMTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRNHPDLPEGQLAKLRAAV 87

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138
           V+    + VAR L L  F+R+            +SI AD +E+LI ++Y++ G++ A   
Sbjct: 88  VNMRALADVARTLGLGRFLRLGRGEEGTGGRDKSSILADTLEALIGSVYVNRGLDEAFRV 147

Query: 139 VDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
           V   +     +S       D KT LQE   ++    PEY V   SGPDH   FT VV
Sbjct: 148 VHLLFDPLITRSASLGAGLDWKTSLQELTASEALGVPEYHVE-ESGPDHAKSFTAVV 203


>gi|329724352|gb|EGG60864.1| ribonuclease III [Staphylococcus epidermidis VCU144]
          Length = 249

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 106/225 (47%), Gaps = 11/225 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           +++   K +G  F N  L ++A +HSS  + +     E  ERLEFLGD +L L +S  LF
Sbjct: 16  KFTDKMKSLGLHFKNIDLYQQAFSHSSFINDFNMNRLEHNERLEFLGDAVLELTVSRYLF 75

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           +      EG L+    ++V   +    A ++ L   I +     K       S+ +D  E
Sbjct: 76  DRHPHLPEGNLTKMRATIVCEPSLVIFANKIKLNELILLGKGEEKTGGRTRPSLISDAFE 135

Query: 121 SLIAALYLDGGIEVAGTFVDK----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           + + ALYLD G++   TF +K    Y +   L       D KT+ QE+ H++      Y+
Sbjct: 136 AFVGALYLDQGLDSVWTFAEKVIFPYVEDDELVG---VVDFKTQFQEYVHSQNKGDVTYQ 192

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +    GP H   FT  V +   A A+G   +K+ +EQ AA +  K
Sbjct: 193 LIKEEGPAHHRLFTSEVILENKAVAEGKGKTKKESEQKAAEQAYK 237


>gi|293366802|ref|ZP_06613478.1| ribonuclease III [Staphylococcus epidermidis M23864:W2(grey)]
 gi|291319103|gb|EFE59473.1| ribonuclease III [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329736553|gb|EGG72819.1| ribonuclease III [Staphylococcus epidermidis VCU045]
          Length = 245

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 106/225 (47%), Gaps = 11/225 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           +++   K +G  F N  L ++A +HSS  + +     E  ERLEFLGD +L L +S  LF
Sbjct: 16  KFTDKMKSLGLHFKNIDLYQQAFSHSSFINDFNMNRLEHNERLEFLGDAVLELTVSRYLF 75

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           +      EG L+    ++V   +    A ++ L   I +     K       S+ +D  E
Sbjct: 76  DRHPHLPEGNLTKMRATIVCEPSLVIFANKIKLNELILLGKGEEKTGGRTRPSLISDAFE 135

Query: 121 SLIAALYLDGGIEVAGTFVDK----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           + + ALYLD G++   TF +K    Y +   L       D KT+ QE+ H++      Y+
Sbjct: 136 AFVGALYLDQGLDSVWTFAEKVIFPYVEDDELVG---VVDFKTQFQEYVHSQNKGDVTYQ 192

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +    GP H   FT  V +   A A+G   +K+ +EQ AA +  K
Sbjct: 193 LIKEEGPAHHRLFTSEVILENKAVAEGKGKTKKESEQKAAEQAYK 237


>gi|15676584|ref|NP_273728.1| ribonuclease III [Neisseria meningitidis MC58]
 gi|22654075|sp|Q9K0C8|RNC_NEIMB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|7225914|gb|AAF41104.1| ribonuclease III [Neisseria meningitidis MC58]
 gi|261392941|emb|CAX50526.1| ribonuclease III (RNase III) [Neisseria meningitidis 8013]
 gi|316983658|gb|EFV62639.1| ribonuclease III [Neisseria meningitidis H44/76]
 gi|325139865|gb|EGC62396.1| ribonuclease III [Neisseria meningitidis CU385]
 gi|325200628|gb|ADY96083.1| ribonuclease III [Neisseria meningitidis H44/76]
          Length = 239

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 103/197 (52%), Gaps = 7/197 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F  
Sbjct: 11  HAAIQKKLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 67

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 68  LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +  D     A   V   +  R ++   F+   +D KT LQE   A+    P+Y++  + G
Sbjct: 128 VSFDADFNTAEKVVRHLFADR-VRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIG 186

Query: 183 PDHDPRFTVVVEISGLA 199
             +D  F +  ++  L 
Sbjct: 187 YANDSMFVISCDLGELG 203


>gi|225010255|ref|ZP_03700727.1| Ribonuclease III [Flavobacteria bacterium MS024-3C]
 gi|225005734|gb|EEG43684.1| Ribonuclease III [Flavobacteria bacterium MS024-3C]
          Length = 256

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 113/221 (51%), Gaps = 18/221 (8%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61
           ++ +   +G+   N S+ +KA  H S+          +YERLEFLGD +LG +IS  ++N
Sbjct: 31  FTGMRNILGFKPKNLSIYKKAFIHRSLHLKDPQGNPLNYERLEFLGDAMLGAIISKYIYN 90

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
              +A EG L+   + +VS E  +++ +EL+L SF  V S + KD   F  ++  +V E+
Sbjct: 91  EVPAADEGYLTKMRSKIVSREHLNELGKELNLLSF--VDSKVHKD--HFGDNVHGNVFEA 146

Query: 122 LIAALYLDGGIEVAGTFVDKYWK------QRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
           L+ A+YLD G +    F+  Y K        A   GK     K+ L EW   K   T  +
Sbjct: 147 LVGAIYLDRGYKYCENFI--YLKIIEPHVDLAKLEGKV-TSYKSLLIEWCQ-KEKKTFNF 202

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           ++   SG D    F+V + I+    ++G   SK+ AE+ AA
Sbjct: 203 QIFEDSGNDPIKHFSVRLAINKKVISKGRGPSKKKAEEQAA 243


>gi|284048724|ref|YP_003399063.1| ribonuclease III [Acidaminococcus fermentans DSM 20731]
 gi|283952945|gb|ADB47748.1| ribonuclease III [Acidaminococcus fermentans DSM 20731]
          Length = 234

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 107/231 (46%), Gaps = 10/231 (4%)

Query: 1   MSALRYSTLE---KRIGYAFANRSLLEKALTHSSISHSYQES-----YERLEFLGDRILG 52
           M   R   LE   +++G    +  LL+ ALTH+S ++  +++      +RLEFLGD +L 
Sbjct: 1   MEEQRQKELEGLCRQLGMEMKDLHLLDMALTHTSYAYESKKNPRPQHNQRLEFLGDSVLS 60

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
           L++ST ++       EGELS     LV  ET +Q+A E  L   + +             
Sbjct: 61  LVVSTHIYKTCPQMDEGELSKLRAFLVCEETLAQLATENHLGDHLLLGKGEINLDGEENP 120

Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFG 170
           SI AD  ES++ A YLD G       +++    R   L +    RD KT LQE       
Sbjct: 121 SILADAFESVLGAYYLDQGFARVTGLLNRLLISRIPELTADGIDRDYKTRLQEVVQKDGP 180

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
               Y      GP H+  F + V ++G    +G   +K+ AEQ AA E LK
Sbjct: 181 AEILYDQVSAEGPSHNRTFVMRVLVNGNELGKGRGRTKKEAEQRAAREALK 231


>gi|42561014|ref|NP_975465.1| ribonuclease III [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|81400621|sp|Q6MTC9|RNC_MYCMS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|42492511|emb|CAE77107.1| ribonuclease III [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|301321343|gb|ADK69986.1| ribonuclease III [Mycoplasma mycoides subsp. mycoides SC str.
           Gladysdale]
          Length = 232

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/212 (33%), Positives = 109/212 (51%), Gaps = 10/212 (4%)

Query: 19  NRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           N  L  +ALTH+S +  H  + SY+RLEFLGD IL + +S  LF ++    EGEL+    
Sbjct: 16  NEKLFNEALTHNSYANEHKLKYSYQRLEFLGDAILQMYVSRFLFFNYSKLSEGELTRLRA 75

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL----DGGI 132
           S V  ET  +VA++++L + +++             SI ADV E+L AA+YL    DG +
Sbjct: 76  STVREETLFRVAKDINLGALVKLGHGEYITKGYEKPSILADVFEALTAAIYLDQKEDGLV 135

Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS--GPDHDPRFT 190
              G  + KY K     +    +D K+ELQE   ++     +Y +        ++   +T
Sbjct: 136 TWLGQTLFKYIKDSNFIND--TKDFKSELQELLQSEKRSDLKYIIEKEDFFANENKILYT 193

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           V V ++G     G   SK+ AEQ AA++ L +
Sbjct: 194 VSVNLNGQKFGVGKGFSKQEAEQNAASDCLSK 225


>gi|330466266|ref|YP_004404009.1| ribonuclease iii [Verrucosispora maris AB-18-032]
 gi|328809237|gb|AEB43409.1| ribonuclease iii [Verrucosispora maris AB-18-032]
          Length = 287

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/217 (33%), Positives = 108/217 (49%), Gaps = 13/217 (5%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE   G +  +  LLE+ALTH S ++      + ERLEFLGD +LG++I+T LF++    
Sbjct: 14  LEAAFGVSM-DPELLERALTHRSYAYENGGLPTNERLEFLGDSVLGVVITTALFHNHPDL 72

Query: 67  KEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            EG+L+    S+V+    + VAR L    L  ++ +             SI AD +E+L+
Sbjct: 73  PEGQLAKLRASVVNMRALADVARGLGPDGLGPYLLLGKGEETTGGRDKASILADTLEALL 132

Query: 124 AALYLDGGIEVAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            A+YL  G++ A   +    D    + A +      D KT LQE   A     PEY++  
Sbjct: 133 GAIYLQYGLDTAAEVIHRLFDPLMAESAGRGAAL--DWKTSLQELTAALGLGVPEYRIEG 190

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            +GPDH   FT  V ++G         SK+ AEQ AA
Sbjct: 191 -AGPDHLKTFTAWVVVAGNRYGGADGRSKKEAEQRAA 226


>gi|291299631|ref|YP_003510909.1| ribonuclease III [Stackebrandtia nassauensis DSM 44728]
 gi|290568851|gb|ADD41816.1| ribonuclease III [Stackebrandtia nassauensis DSM 44728]
          Length = 243

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 72/204 (35%), Positives = 108/204 (52%), Gaps = 12/204 (5%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           +L  A+TH S ++      + ERLEFLGD +LGL+++  L+  F    EG+L+    S+V
Sbjct: 27  MLTLAMTHRSYAYERGGLPTNERLEFLGDAVLGLVVTATLYRQFPDLPEGQLARLRASVV 86

Query: 80  SAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           +    + VAR L    +   + +             SI AD VE+L+ ALYL+ G++VA 
Sbjct: 87  NMRALAGVARALGPGGVGPHLLLGKGEESSGGRDKNSILADSVEALLGALYLEHGMDVAA 146

Query: 137 TFVDKYWK---QRALKSGKFRRDAKTELQEW-AHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
             V K +    + A + G    D KT LQE  + A  GV P+Y+++  +GPDH  RFT  
Sbjct: 147 GVVHKLFDPMIEVAARRGAA-LDWKTSLQELTSGAGLGV-PDYRIS-ETGPDHAKRFTAW 203

Query: 193 VEISGLAPAQGMDCSKRAAEQVAA 216
             + G    +G   SK+ AEQ+AA
Sbjct: 204 AVVGGEEFGEGTGGSKKEAEQIAA 227


>gi|256384023|gb|ACU78593.1| ribonuclease III [Mycoplasma mycoides subsp. capri str. GM12]
 gi|256384855|gb|ACU79424.1| ribonuclease III [Mycoplasma mycoides subsp. capri str. GM12]
 gi|296455406|gb|ADH21641.1| ribonuclease III [synthetic Mycoplasma mycoides JCVI-syn1.0]
          Length = 232

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/212 (33%), Positives = 110/212 (51%), Gaps = 10/212 (4%)

Query: 19  NRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           N  L  +ALTH+S +  H  + SY+RLEFLGD IL + +S  LF ++    EGEL+    
Sbjct: 16  NEKLFNEALTHNSYANEHKLKYSYQRLEFLGDAILQMYVSRFLFFNYSKLSEGELTRLRA 75

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           S V  ET  +VA++++L + +++             SI ADV E+L AA+YLD   +   
Sbjct: 76  STVREETLFRVAKDINLGALVKLGHGEYITKGYEKPSILADVFEALTAAIYLDQKEDGLV 135

Query: 137 TFVD----KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS--GPDHDPRFT 190
           T++D    KY K     +    +D K+ELQE   ++     +Y +        ++   +T
Sbjct: 136 TWLDQTLFKYIKDSNFIND--TKDFKSELQELLQSEKRSDLKYIIEKEDFFANENKILYT 193

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           V V ++G     G   SK+ AEQ AA++ L +
Sbjct: 194 VSVNLNGQKFGVGKGFSKQEAEQNAASDCLSK 225


>gi|331703478|ref|YP_004400165.1| ribonuclease III [Mycoplasma mycoides subsp. capri LC str. 95010]
 gi|328802033|emb|CBW54187.1| Ribonuclease III [Mycoplasma mycoides subsp. capri LC str. 95010]
          Length = 232

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/212 (33%), Positives = 110/212 (51%), Gaps = 10/212 (4%)

Query: 19  NRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           N  L  +ALTH+S +  H  + SY+RLEFLGD IL + +S  LF ++    EGEL+    
Sbjct: 16  NEKLFNEALTHNSYANEHKLKYSYQRLEFLGDAILQMYVSRFLFFNYSKLSEGELTRLRA 75

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           S V  ET  +VA++++L + +++             SI ADV E+L AA+YLD   +   
Sbjct: 76  STVREETLFRVAKDINLGALVKLGHGEYITKGYEKPSILADVFEALTAAIYLDQKEDGLV 135

Query: 137 TFVD----KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS--GPDHDPRFT 190
           T++D    KY K     +    +D K+ELQE   ++     +Y +        ++   +T
Sbjct: 136 TWLDQTLFKYIKDSNFIND--TKDFKSELQELLQSEKRSDLKYIIEKEDFFANENKILYT 193

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           V V ++G     G   SK+ AEQ AA++ L +
Sbjct: 194 VSVNLNGQKFGVGKGFSKQEAEQNAASDCLSK 225


>gi|304388061|ref|ZP_07370190.1| ribonuclease III [Neisseria meningitidis ATCC 13091]
 gi|304337918|gb|EFM04058.1| ribonuclease III [Neisseria meningitidis ATCC 13091]
          Length = 267

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 103/197 (52%), Gaps = 7/197 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F  
Sbjct: 39  HAAIQKKLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 95

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 96  LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 155

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +  D     A   V   +  R ++   F+   +D KT LQE   A+    P+Y++  + G
Sbjct: 156 VSFDADFNTAEKVVRHLFADR-VRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIG 214

Query: 183 PDHDPRFTVVVEISGLA 199
             +D  F +  ++  L 
Sbjct: 215 YANDSMFVISCDLGELG 231


>gi|94469415|gb|ABF20195.1| ribonuclease III [Ehrlichia ruminantium]
          Length = 138

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 74/132 (56%)

Query: 91  LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS 150
           ++L  FI +S   R    +  ++   + +E+LI A+YLDGG++ A  F+  +WK  A   
Sbjct: 1   INLGIFIIMSDGERSCGGANNSNNLENALEALIGAIYLDGGLKAAKDFIFLFWKNSATHM 60

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
               +DAKT LQEWA +K    P Y +  +SGPDH+P FTV V I+          +K+ 
Sbjct: 61  KVPPQDAKTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRINSHETLHATGHNKKL 120

Query: 211 AEQVAAAEVLKR 222
           AEQ AA+ +L +
Sbjct: 121 AEQKAASLMLAK 132


>gi|314933411|ref|ZP_07840776.1| ribonuclease III [Staphylococcus caprae C87]
 gi|313653561|gb|EFS17318.1| ribonuclease III [Staphylococcus caprae C87]
          Length = 245

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 102/216 (47%), Gaps = 11/216 (5%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           G++F N  L ++A +HSS  + +     +  ERLEFLGD +L L +S  LF+      EG
Sbjct: 25  GFSFNNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLFDKHPHLPEG 84

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
            L+    ++V   +    A ++DL   I +     K       S+ +D  E+ + ALYLD
Sbjct: 85  NLTKMRATIVCEPSLVIFANKIDLNELILLGKGEEKTGGRTRPSLISDAFEAFVGALYLD 144

Query: 130 GGIEVAGTFVDK----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
            G++    F +K    Y +   L       D KT+ QE+ H +      Y++    GP H
Sbjct: 145 QGLDTVWKFAEKVIFPYVEDDELVG---VVDFKTQFQEYVHRQNKGDVTYRLIKEEGPAH 201

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              FT  V +   A A+G   +K+ +EQ AA +  K
Sbjct: 202 HRLFTSEVILENNAVAEGKGKTKKESEQKAAEQAYK 237


>gi|295425203|ref|ZP_06817906.1| ribonuclease III [Lactobacillus amylolyticus DSM 11664]
 gi|295064979|gb|EFG55884.1| ribonuclease III [Lactobacillus amylolyticus DSM 11664]
          Length = 227

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/201 (33%), Positives = 98/201 (48%), Gaps = 10/201 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDS 65
           L ++ G  F N  LLE+A THSS ++ + E    YE+LEFLGD +L L +S  L+ H+ +
Sbjct: 10  LNEKYGIKFHNEKLLEEAFTHSSYANEHPEGVRDYEKLEFLGDAVLELAVSDYLYRHYPN 69

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGEL+   +++V  E  S+ A E      I +     K       ++  DV E+   A
Sbjct: 70  LNEGELTRMRSNIVRTEGFSEFAIECGFQDEINLGKGEEKAGARHRKTLLEDVFEAFNGA 129

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG- 182
           LYLD G++    F+        +  G+F   RD KT+LQE       V  EY     S  
Sbjct: 130 LYLDQGMKAVTHFL-HLTVYPLIDKGEFDASRDYKTDLQELLQKDGPVNIEYVTLSESQL 188

Query: 183 PDHDPRFTVVVEISGLAPAQG 203
           P H   F V ++I+    +QG
Sbjct: 189 PSH---FVVELKINDHVQSQG 206


>gi|313884921|ref|ZP_07818673.1| ribonuclease III [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619612|gb|EFR31049.1| ribonuclease III [Eremococcus coleocola ACS-139-V-Col8]
          Length = 233

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 98/207 (47%), Gaps = 5/207 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           ++K  G  F N  +L+ A  H+S ++ + +      ERLEFLGD +L L+ S  LFN + 
Sbjct: 8   IQKNTGITFTNIEILQTAFCHTSYANEHAKEKLKDNERLEFLGDAVLELITSDFLFNTYP 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+L+     LV   + + VAR+  L   I++          F  SI +D  E+ + 
Sbjct: 68  DKPEGQLTRMRAQLVKEPSLALVARKYQLDQLIQLGKGEEASGGRFRDSIVSDAFEAFLG 127

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           A+YLD G      F+ +   +  L+  K    D KT  QE   ++  V  +Y++    GP
Sbjct: 128 AIYLDQGFARVTEFLQQALLKPHLQIIKVINIDYKTLFQEKVQSQGPVNIDYRLIKEEGP 187

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRA 210
            H   F V + +     +QG   SK++
Sbjct: 188 AHHRLFVVALYLDDQLVSQGQGYSKKS 214


>gi|319410059|emb|CBY90393.1| ribonuclease III [Neisseria meningitidis WUE 2594]
          Length = 310

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 104/197 (52%), Gaps = 7/197 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F  
Sbjct: 82  HAAIQKKLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 138

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 139 LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 198

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +  D     A   V   + +R ++   F+   +D KT LQE   A+    P+Y++  + G
Sbjct: 199 VSFDADFNTAEKVVRHLFAER-VRRVDFQNQAKDGKTALQEALQARRFALPKYRIEEQIG 257

Query: 183 PDHDPRFTVVVEISGLA 199
             +D  F +  ++  L 
Sbjct: 258 HANDSMFVISCDLGELG 274


>gi|186681704|ref|YP_001864900.1| ribonuclease III [Nostoc punctiforme PCC 73102]
 gi|186464156|gb|ACC79957.1| ribonuclease III [Nostoc punctiforme PCC 73102]
          Length = 239

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/199 (31%), Positives = 108/199 (54%), Gaps = 7/199 (3%)

Query: 22  LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
           LL+ ALTH ++S S   +YE+LEF+GD ++ L+ + +L+ ++     G+ +   + LVS 
Sbjct: 31  LLDLALTHPTVSDS--ANYEQLEFVGDAVVRLVSAVVLWENYPDCPVGDFAAIRSVLVSD 88

Query: 82  ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG-GIEVAGTFVD 140
              +Q+AR   L  ++ V+     D     + + AD  E+++ ALYL    +E+  +++D
Sbjct: 89  RILAQLARIYGLELYLLVAGSATADKVGQESRL-ADAFEAVLGALYLSTQNLELIRSWLD 147

Query: 141 KYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISG 197
            ++++    ++    R + K  LQEW  A+F V PEY+V   + P H+  RF   V + G
Sbjct: 148 PHFQELTTEIRLDPARLNYKAALQEWTQAQFKVLPEYRVVEVTQPHHNQERFMAEVWLHG 207

Query: 198 LAPAQGMDCSKRAAEQVAA 216
               +G   S + AEQ AA
Sbjct: 208 KKLGEGKGRSIKTAEQAAA 226


>gi|254415469|ref|ZP_05029229.1| ribonuclease III [Microcoleus chthonoplastes PCC 7420]
 gi|196177650|gb|EDX72654.1| ribonuclease III [Microcoleus chthonoplastes PCC 7420]
          Length = 239

 Score = 89.0 bits (219), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 93/202 (46%), Gaps = 11/202 (5%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHF 63
           STLE        N +L   ALTH S  + +    E  ERLEFLGD +LG ++  LL+  +
Sbjct: 9   STLEMNQLPTIKNETLRLSALTHRSYVNEHPKAGEHNERLEFLGDAVLGFVVGELLYKRY 68

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               E  L+    +LV  +  ++ A +L +   +R+     K+      ++ +D +E+ +
Sbjct: 69  PDVSEAHLTRLRANLVDEKQLAKFASQLGIGDLMRLGKGADKEGGRQNPALLSDTLEAYM 128

Query: 124 AALYLDGGIEVAGTFV--------DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
           AA Y++ GI+    F+        D    Q++    K   D K   Q+WA A F   P Y
Sbjct: 129 AAYYIESGIDAVRQFIYPLFSRVADSIAVQQSDTEPKNLVDPKGRFQQWALANFVENPTY 188

Query: 176 KVTFRSGPDHDPRFTVVVEISG 197
            +   SG DH   FT  V + G
Sbjct: 189 SIIDESGLDHAKEFTAEVRVKG 210


>gi|167764094|ref|ZP_02436221.1| hypothetical protein BACSTE_02477 [Bacteroides stercoris ATCC
           43183]
 gi|167698210|gb|EDS14789.1| hypothetical protein BACSTE_02477 [Bacteroides stercoris ATCC
           43183]
          Length = 315

 Score = 89.0 bits (219), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 112/225 (49%), Gaps = 13/225 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y    K +G+   N    E+AL H S S   ++    + ERLEFLGD IL  ++  +++ 
Sbjct: 20  YFCFYKILGFFPRNIRFYEQALLHKSTSIRSEKGRPLNNERLEFLGDAILDAIVGDIVYK 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF+  +EG L+   + +V  ET +++A E+ L   ++ S+       S  + +  +  E+
Sbjct: 80  HFEGRREGFLTNTRSKIVQRETLNKLAVEIGLDKLVKYST----RSSSHNSYMYGNAFEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAH-AKFGVTPEYKV 177
            I A+YLD G E    F++K   +  +   K  R   + K++L EW+   K  V+ E   
Sbjct: 136 FIGAIYLDQGYERCKQFMEKKILKNYIDLDKMSRKEVNFKSKLIEWSQKTKMEVSFELIE 195

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            F    D++P F   V I GL+   G   SK+ ++Q AA   LK+
Sbjct: 196 QFLD-QDYNPMFHTEVRIEGLSAGTGTGYSKKESQQNAAQMALKK 239


>gi|110637800|ref|YP_678007.1| ribonuclease III [Cytophaga hutchinsonii ATCC 33406]
 gi|110280481|gb|ABG58667.1| RNAse III [Cytophaga hutchinsonii ATCC 33406]
          Length = 247

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 106/220 (48%), Gaps = 16/220 (7%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLL 59
           +RY T     G    N  L + A+ H+S +       +ESYERLE+LGD ILG +++  L
Sbjct: 27  IRYVT-----GMWPGNLHLYQMAIVHTSAADENESGVKESYERLEYLGDSILGAVVAEYL 81

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F  F    EG L+   + +V+ E  +QV ++L L+  +  +    K       S+  DVV
Sbjct: 82  FKRFPFKDEGFLTEIRSRIVNREILNQVGKDLGLSDIVVFNGSKGK---QGHKSLYGDVV 138

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYK 176
           E+++ A+YLD G E A  FV K      +         ++ K+ L EW   K     E+ 
Sbjct: 139 EAIVGAVYLDKGFENAKKFVLKKIVSSQIDVDAIIQNNKNFKSILLEWCQ-KENKKLEFV 197

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           +   SG  H   F   V ++  +  QG+  SK+ AEQ AA
Sbjct: 198 IIEESGHRHQKVFKAEVRVADESKGQGIGFSKKKAEQNAA 237


>gi|154493472|ref|ZP_02032792.1| hypothetical protein PARMER_02811 [Parabacteroides merdae ATCC
           43184]
 gi|154086682|gb|EDN85727.1| hypothetical protein PARMER_02811 [Parabacteroides merdae ATCC
           43184]
          Length = 301

 Score = 88.6 bits (218), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 116/230 (50%), Gaps = 13/230 (5%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M+   YS+L K +G+   N  L E+A  H S S    +    + ERLEFLGD +L  +++
Sbjct: 15  MNKEPYSSLYKILGFYPDNIHLYEQAFLHKSSSVESGDGRWLNNERLEFLGDAVLDAVVA 74

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
            +++ HF + +EG L+   + +V  ET ++VA EL L   +  S+ L     S    +  
Sbjct: 75  DIVYKHFQNKREGFLTNTRSKIVQRETMNRVAVELGLDKMVVYSAKL----SSHNNHMYG 130

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVT 172
           + +E+LI A+YLD G EV   F+     ++ +      R   + K+ L EW+   K  ++
Sbjct: 131 NALEALIGAIYLDQGYEVCYNFIQNVLIKKHVNLETIARKEVNFKSSLIEWSQKNKLEIS 190

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            +   +F +  D +P F   V +S      G+  SK+ ++Q AA   +K+
Sbjct: 191 FDLIESF-TDNDGNPVFQTGVTLSDTQIGVGIGYSKKESQQSAAKMAIKK 239


>gi|302525051|ref|ZP_07277393.1| ribonuclease III [Streptomyces sp. AA4]
 gi|302433946|gb|EFL05762.1| ribonuclease III [Streptomyces sp. AA4]
          Length = 246

 Score = 88.6 bits (218), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 102/208 (49%), Gaps = 14/208 (6%)

Query: 19  NRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           +  LL  +LTH S +  H      ERLEFLGD +LGL+++  L+       EG+L+    
Sbjct: 25  DPELLRLSLTHRSYAYEHGGLPPNERLEFLGDAVLGLVVTDHLYTTHPDLPEGQLAKLRA 84

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSF---MTSIQADVVESLIAALYLDGGIE 133
           S+V+    + VAR L            + +  +      SI AD +E++I A YL  GIE
Sbjct: 85  SVVNMHALAGVARGLGEGGLGAHLLLGKGEELTGGRDKASILADGLEAVIGATYLAHGIE 144

Query: 134 VAGTFV----DKYWKQRALKSGKFRRDAKTELQEW-AHAKFGVTPEYKVTFRSGPDHDPR 188
           VA   V    D    +  L+      D KT LQE  A    GV PEY+V   SGPDH   
Sbjct: 145 VARKLVHHLFDGLLAEAPLRGAGL--DWKTSLQELTASGGLGV-PEYRVE-DSGPDHRKE 200

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           FT  V ++G A  +G   +K+ AEQ AA
Sbjct: 201 FTATVLVAGRALGEGNGTTKKEAEQKAA 228


>gi|294668882|ref|ZP_06733972.1| ribonuclease III [Neisseria elongata subsp. glycolytica ATCC 29315]
 gi|291309179|gb|EFE50422.1| ribonuclease III [Neisseria elongata subsp. glycolytica ATCC 29315]
          Length = 233

 Score = 88.6 bits (218), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 107/211 (50%), Gaps = 6/211 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +++++ Y F    LL +ALTH S S  + E   R EF+GD IL   I+ +L++ F    E
Sbjct: 4   IQQKLQYRFKQPELLTRALTHRSYSSRHNE---RFEFVGDAILNYTIAKMLYDTFLDLPE 60

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G LS    +LV+ +T +++A EL +   + + +   K       SI +D +E++ AA+  
Sbjct: 61  GRLSRLRANLVNQDTLAEIATELKVGDALLLGNGELKSGGFRRPSILSDAMEAMFAAVSF 120

Query: 129 DGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D     A   V   + +R  ++      +DAKT LQE   A+    P+Y++  + G  + 
Sbjct: 121 DTDFNAAEQVVRHLFARRVGSISFDNEGKDAKTMLQEALQARRLALPKYRIEHQEGEGYT 180

Query: 187 PRFTVVVEISGLAPAQGMDC-SKRAAEQVAA 216
            RFTV  ++  L      +  S+RAAEQ  A
Sbjct: 181 ARFTVSCDLGELGFITTAEAHSRRAAEQQTA 211


>gi|126655310|ref|ZP_01726749.1| Ribonuclease III [Cyanothece sp. CCY0110]
 gi|126622789|gb|EAZ93494.1| Ribonuclease III [Cyanothece sp. CCY0110]
          Length = 240

 Score = 88.6 bits (218), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 109/204 (53%), Gaps = 7/204 (3%)

Query: 19  NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           N  LL+ ALTH +IS   + +Y++LEF+GD ++ L+ + +L   +     GE +   + L
Sbjct: 28  NLELLDLALTHPTISR--ENNYQQLEFVGDSVIRLVSAEILLETYPDELVGEFAAIRSIL 85

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIEVAGT 137
           VS  T ++ A +  L  ++ ++  + +D    ++ + AD  E+++ ALYL    + +   
Sbjct: 86  VSDRTLAEFAEQYGLDRYLLMADSVAQDTMGRVSWL-ADAFEAVLGALYLSTKNMTLVRP 144

Query: 138 FVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVE 194
           ++D    ++A  ++S   R++ K  LQEW  A++ + PEY+VT +     HD RF   V 
Sbjct: 145 WLDPLLLKKAAEIRSDPARQNYKDALQEWTQAQYKILPEYRVTEQDKDRGHDERFFAEVS 204

Query: 195 ISGLAPAQGMDCSKRAAEQVAAAE 218
           +       G   SK+ AEQ AA +
Sbjct: 205 LKDRKLGSGYGRSKKMAEQAAAKD 228


>gi|330983107|gb|EGH81210.1| ribonuclease III [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 132

 Score = 88.6 bits (218), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 54/129 (41%), Positives = 74/129 (57%), Gaps = 3/129 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S LE+++GY F ++ L+  ALTH S +     + ERLEFLGD IL  +    LF     A
Sbjct: 6   SRLERQLGYTFKDQELMVLALTHRSFAG---RNNERLEFLGDAILNFVAGEALFERSPQA 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +EG+LS     LV  ET + +AR  DL  ++R+ S   K       SI AD +E+LI A+
Sbjct: 63  REGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADALEALIGAI 122

Query: 127 YLDGGIEVA 135
           YLD G+E A
Sbjct: 123 YLDAGMEAA 131


>gi|329770217|ref|ZP_08261607.1| ribonuclease III [Gemella sanguinis M325]
 gi|328837023|gb|EGF86667.1| ribonuclease III [Gemella sanguinis M325]
          Length = 237

 Score = 88.6 bits (218), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/204 (33%), Positives = 104/204 (50%), Gaps = 9/204 (4%)

Query: 26  ALTHSSISH----SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
           A +HSS ++    +   +YERLEFLGD ++ L  S  LF  F +  EGEL+    S+V  
Sbjct: 30  AFSHSSYTNEKRIAKHLNYERLEFLGDAVVELTTSEFLFKKFPNLAEGELTKLRASIVCE 89

Query: 82  ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141
           +T  + A +L+L   I +     K       ++ AD+ ES   A+YL+ G+E   TF+  
Sbjct: 90  KTLVKYALQLNLDKCIFLGKGEEKMGGRSRAALLADIFESFTGAMYLEAGLETVKTFLSN 149

Query: 142 --YWKQRALKSGKFRRDAKTELQEW-AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
             + +  + +   F  D KT LQE+ +  K GV  EY V   SGP H   FT  V I G 
Sbjct: 150 TLFTEVDSFEYLSF-VDYKTILQEYVSKIKLGVI-EYTVLDSSGPSHLKTFTSAVIIDGK 207

Query: 199 APAQGMDCSKRAAEQVAAAEVLKR 222
               G   +K+ +EQ++A   L++
Sbjct: 208 QYGSGTAKTKKESEQLSAKAALEK 231


>gi|223043742|ref|ZP_03613785.1| ribonuclease III [Staphylococcus capitis SK14]
 gi|222442839|gb|EEE48941.1| ribonuclease III [Staphylococcus capitis SK14]
          Length = 245

 Score = 88.6 bits (218), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 101/216 (46%), Gaps = 11/216 (5%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           G+ F N  L ++A +HSS  + +     +  ERLEFLGD +L L +S  LF+      EG
Sbjct: 25  GFNFNNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLFDKHPHLPEG 84

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
            L+    ++V   +    A ++DL   I +     K       S+ +D  E+ + ALYLD
Sbjct: 85  NLTKMRATIVCEPSLVIFANKIDLNELILLGKGEEKTGGRTRPSLISDAFEAFVGALYLD 144

Query: 130 GGIEVAGTFVDK----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
            G++    F +K    Y +   L       D KT+ QE+ H +      Y++    GP H
Sbjct: 145 QGLDTVWKFAEKVIFPYVEDDELVG---VVDFKTQFQEYVHRQNKGDVTYRLIKEEGPAH 201

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              FT  V +   A A+G   +K+ +EQ AA +  K
Sbjct: 202 HRLFTSEVILENNAVAEGKGKTKKESEQKAAEQAYK 237


>gi|240047461|ref|YP_002960849.1| Ribonuclease III [Mycoplasma conjunctivae HRC/581]
 gi|239985033|emb|CAT05026.1| Ribonuclease III [Mycoplasma conjunctivae]
          Length = 228

 Score = 88.2 bits (217), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 69/211 (32%), Positives = 107/211 (50%), Gaps = 17/211 (8%)

Query: 19  NRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           N  +  +ALTH S  H    S  YE LEFLGD I+   +S  +F+  +  KEG+ S    
Sbjct: 22  NLEIYNQALTHKSYQHFNPNSSHYEMLEFLGDSIINFKVSEFIFSKINFQKEGQASQLRA 81

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
             +S+ T +++  +L L+  I+V     KD+ +  T ++ADV ES  AA+YLD G EV  
Sbjct: 82  KSISSLTFAKICDDLQLSDLIQVGKG-AKDILT-NTKLKADVFESFCAAIYLDQGNEVLD 139

Query: 137 TFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV-- 193
            F++KY     +++ K   +D K+E QE    K       K+T++S    D  F   +  
Sbjct: 140 LFLEKYLYDFVIQNAKHNNKDPKSEFQE----KIQSFSTEKITYQSTKQSDGSFQSELIW 195

Query: 194 --EISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             +I G+   + M    + AE  AA + L+R
Sbjct: 196 DNQIFGVGSGKSM----KEAEFNAARQALER 222


>gi|100271808|gb|ABF69304.1| ribonuclease III [Ehrlichia ruminantium]
 gi|100271814|gb|ABF69308.1| ribonuclease III [Ehrlichia ruminantium]
 gi|100271820|gb|ABF69312.1| ribonuclease III [Ehrlichia ruminantium]
 gi|100271823|gb|ABF69314.1| ribonuclease III [Ehrlichia ruminantium]
 gi|100271826|gb|ABF69316.1| ribonuclease III [Ehrlichia ruminantium]
 gi|100271829|gb|ABF69318.1| ribonuclease III [Ehrlichia ruminantium]
 gi|100271835|gb|ABF69322.1| ribonuclease III [Ehrlichia ruminantium]
 gi|100271847|gb|ABF69330.1| ribonuclease III [Ehrlichia ruminantium]
 gi|108951328|gb|ABG25048.1| ribonuclease III [Ehrlichia ruminantium]
 gi|108951331|gb|ABG25050.1| ribonuclease III [Ehrlichia ruminantium]
          Length = 137

 Score = 88.2 bits (217), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 49/131 (37%), Positives = 73/131 (55%)

Query: 92  DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151
           +L  FI +S   R    +  ++   + +E+LI A+YLDGG++ A  F+  +WK  A    
Sbjct: 1   NLGIFIIMSDGERSCGGANNSNNLENALEALIGAIYLDGGLKAAKDFIFLFWKNSATHMK 60

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
              +DAKT LQEWA +K    P Y +  +SGPDH+P FTV V I+          +K+ A
Sbjct: 61  VPPQDAKTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRINSHETLHATGHNKKLA 120

Query: 212 EQVAAAEVLKR 222
           EQ AA+ +L +
Sbjct: 121 EQKAASLMLAK 131


>gi|81428322|ref|YP_395322.1| ribonuclease (RNase III) [Lactobacillus sakei subsp. sakei 23K]
 gi|90101628|sp|Q38XR8|RNC_LACSS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|78609964|emb|CAI55011.1| Ribonuclease (RNase III) [Lactobacillus sakei subsp. sakei 23K]
          Length = 230

 Score = 88.2 bits (217), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 102/199 (51%), Gaps = 7/199 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M A   S L  R G  F N +LL++A THSS  + ++E      ERLEFLGD ++ + +S
Sbjct: 1   MDAALVSELRARYGIEFNNLALLDEAFTHSSYVNEHRELGLRDNERLEFLGDAVMEITVS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+L+    ++V  ++ S  ++E     +IR+     K+      ++  
Sbjct: 61  EYLYKKYPDWPEGKLTRLRAAIVCTKSFSSFSKEAHFDRYIRLGKGEEKNGARARATLLE 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPE 174
           D+ E+   AL+LD G +    FV +    + +++G+F  + D KT LQE+      +  +
Sbjct: 121 DLFEAFNGALFLDQGRDAVVDFVSQVIFPK-IEAGEFSDQTDYKTNLQEFLQQDGEIEID 179

Query: 175 YKVTFRSGPDHDPRFTVVV 193
           Y++    GP HD +F V V
Sbjct: 180 YQLLAEVGPSHDRQFEVDV 198


>gi|158312991|ref|YP_001505499.1| ribonuclease III [Frankia sp. EAN1pec]
 gi|158108396|gb|ABW10593.1| Ribonuclease III [Frankia sp. EAN1pec]
          Length = 306

 Score = 88.2 bits (217), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 70/202 (34%), Positives = 104/202 (51%), Gaps = 14/202 (6%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL++ALTH S ++      + ERLEFLGD +LGL+++  LF       EG+L+ +  S+V
Sbjct: 26  LLDRALTHRSYAYENGGLPTNERLEFLGDAVLGLIVTAALFRRHPDLPEGQLAKQRASVV 85

Query: 80  SAETCSQVARELDLA---SFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           +    + VAR +  A    ++ +             SI AD +E++I A+YL   ++VA 
Sbjct: 86  NMRALADVARRIGTAGIGPYLLLGRGEEATGGRDKPSILADTLEAVIGAVYLSNSLDVAS 145

Query: 137 TFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGV-TPEYKVTFRSGPDHDPRFTV 191
            FV    D    + A +      D KT LQE   A  G+  P+Y VT  +GPDH  RFT 
Sbjct: 146 GFVHRLFDPLLDEAAGRGAGL--DWKTSLQEQT-ALLGLGPPDYAVT-EAGPDHAKRFTA 201

Query: 192 VVEISGLAPAQGMDCSKRAAEQ 213
              ++G    +G   SK+ AEQ
Sbjct: 202 FARVAGEVLGEGEGGSKKEAEQ 223


>gi|100271817|gb|ABF69310.1| ribonuclease III [Ehrlichia ruminantium]
          Length = 137

 Score = 88.2 bits (217), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 49/131 (37%), Positives = 73/131 (55%)

Query: 92  DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151
           +L  FI +S   R    +  ++   + +E+LI A+YLDGG++ A  F+  +WK  A    
Sbjct: 1   NLGIFIIMSDGERSCGGAKNSNNLENALEALIGAIYLDGGLKAAKDFIFLFWKNSATHMK 60

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
              +DAKT LQEWA +K    P Y +  +SGPDH+P FTV V I           +K+ A
Sbjct: 61  VPPQDAKTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRIDSHETLHATGHNKKPA 120

Query: 212 EQVAAAEVLKR 222
           EQ AA+ +L++
Sbjct: 121 EQKAASLMLEK 131


>gi|332664519|ref|YP_004447307.1| ribonuclease 3 [Haliscomenobacter hydrossis DSM 1100]
 gi|332333333|gb|AEE50434.1| Ribonuclease 3 [Haliscomenobacter hydrossis DSM 1100]
          Length = 248

 Score = 88.2 bits (217), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 114/225 (50%), Gaps = 14/225 (6%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESY-----ERLEFLGDRILGLLISTLLFNHF 63
           L+  +GY  AN  + + A +H S S+S  ++Y     ERLE+LGD +LG +++  LF  +
Sbjct: 22  LKPLLGYTPANLGIFKLAFSHKSTSNSGDKAYPMQNNERLEYLGDAVLGTIVAEYLFKKY 81

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             + EG L+   + LV  ++ +++  +++L   +   +  R        S+  + VE+L+
Sbjct: 82  PDSNEGFLTKMRSKLVKRKSLNRIGDKMELELLLSEYNTTR-----LSRSMLGNAVEALV 136

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFR 180
            A+YLD G      FV  +  ++ +   +  R   + K++L EW   K G    YK+  R
Sbjct: 137 GAVYLDRGYASTKIFVINHMLRKYVNIHELERLDDNYKSQLLEWCQ-KSGKNVTYKLLAR 195

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
              +   RF V V I+    A   D +K++AEQ+A+ + +   GI
Sbjct: 196 YKFEKRDRFKVAVMINNKRVATADDFNKKSAEQMASEKAMIALGI 240


>gi|329942692|ref|ZP_08291471.1| ribonuclease III [Chlamydophila psittaci Cal10]
 gi|332287287|ref|YP_004422188.1| ribonuclease III [Chlamydophila psittaci 6BC]
 gi|313847871|emb|CBY16866.1| ribonuclease III [Chlamydophila psittaci RD1]
 gi|325506653|gb|ADZ18291.1| ribonuclease III [Chlamydophila psittaci 6BC]
 gi|328814952|gb|EGF84941.1| ribonuclease III [Chlamydophila psittaci Cal10]
 gi|328914533|gb|AEB55366.1| ribonuclease III [Chlamydophila psittaci 6BC]
          Length = 237

 Score = 87.8 bits (216), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 99/215 (46%), Gaps = 3/215 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISH---SYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           +E ++ + F    LL  ALTH S  +   +  E  ERLEFLGD +L L+++  LF  F S
Sbjct: 10  VEAKLNFTFTQPKLLVTALTHPSYRNETATITEDSERLEFLGDAVLCLIVTEHLFLLFPS 69

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG LS    +L++A +C Q    L L  ++ +    R       TS  A++ E+++ A
Sbjct: 70  MDEGTLSTARAALINAVSCCQYTDALGLGEYLLIGKGERIQNERGRTSAYANLFEAILGA 129

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           +YLDGG+  A          +         + K  LQ+         P Y+    + P  
Sbjct: 130 VYLDGGLAPARQITVPLLPSKKDILPLMLGNPKNRLQQLTQKHLRTLPVYQCESWTSPQG 189

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
              + + V ++     +G   SK+ AE++AA + L
Sbjct: 190 ASGYHIRVIVNNEVWGEGFALSKKEAEKLAAQQAL 224


>gi|100271838|gb|ABF69324.1| ribonuclease III [Ehrlichia ruminantium]
 gi|100271841|gb|ABF69326.1| ribonuclease III [Ehrlichia ruminantium]
          Length = 137

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/131 (37%), Positives = 73/131 (55%)

Query: 92  DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151
           +L  FI +S   R    +  ++   + +E+LI A+YLDGG++ A  F+  +WK  A    
Sbjct: 1   NLGIFIIMSDGERSCGGANNSNNLENALEALIGAIYLDGGLKAAKDFIFLFWKNSATHMK 60

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
              +DAKT LQEWA +K    P Y +  +SGPDH+P FTV V I+          +K+ A
Sbjct: 61  VPPQDAKTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVGINSHETLHATGHNKKLA 120

Query: 212 EQVAAAEVLKR 222
           EQ AA+ +L +
Sbjct: 121 EQKAASLMLAK 131


>gi|224536731|ref|ZP_03677270.1| hypothetical protein BACCELL_01607 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521647|gb|EEF90752.1| hypothetical protein BACCELL_01607 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 296

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 115/225 (51%), Gaps = 13/225 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y    K +G+   N  L ++AL H S S   ++    + ERLEFLGD IL  ++  +++ 
Sbjct: 20  YFCFYKILGFYPRNIQLYQQALLHKSTSIRSEKGRPLNNERLEFLGDAILDAIVGDIVYK 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF+  +EG L+   + +V  ET +++A E+ L   ++ S+       S  + +  +  E+
Sbjct: 80  HFEGRREGFLTNTRSKIVQRETLNKLAVEIGLDKLVKYST----RSSSHNSYMYGNAFEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAH-AKFGVTPEYKV 177
            I A+YLD G E    F+++   +  +   K  R   + K++L EW+  +K  V+ E   
Sbjct: 136 FIGAIYLDQGYERCKRFMEEKIFKNYIDLDKMSRKEVNFKSKLIEWSQKSKVEVSFELIE 195

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            F    D++P F   + I G++  +G   SK+ ++Q AA   LK+
Sbjct: 196 QFLD-EDYNPMFHTEIRIEGISAGKGTGYSKKESQQNAAQAALKK 239


>gi|284928941|ref|YP_003421463.1| RNAse III [cyanobacterium UCYN-A]
 gi|284809400|gb|ADB95105.1| RNAse III [cyanobacterium UCYN-A]
          Length = 243

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 108/199 (54%), Gaps = 7/199 (3%)

Query: 22  LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
           +L  ALTH + S   +++Y++LEF+GD ++ L+ + +L  ++ +   GE +   + LVS 
Sbjct: 31  ILNLALTHPTFSQ--KDNYQQLEFVGDSVIRLVAAEILLENYPNELVGEFAAIRSILVSD 88

Query: 82  ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIEVAGTFVD 140
            T ++ A    L  ++ ++  + KD    ++ + AD  E+L+ ALYL+   + +   ++D
Sbjct: 89  NTLAEFAEVYGLERYLLMAESVAKDKIGRVSWL-ADTFEALLGALYLNRQNMSLIRPWLD 147

Query: 141 KYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISG 197
                +A  +++   R++ K  LQEW+ +++ + P+Y+V    G  +H  RF   V +  
Sbjct: 148 PLLITKAAEIRADPARQNYKDALQEWSQSQYKLLPKYQVVQHQGSENHHQRFFAEVWVKN 207

Query: 198 LAPAQGMDCSKRAAEQVAA 216
                G  CSK+ AEQ AA
Sbjct: 208 NNLGSGYGCSKKVAEQAAA 226


>gi|227550768|ref|ZP_03980817.1| ribonuclease III [Enterococcus faecium TX1330]
 gi|314937654|ref|ZP_07844980.1| ribonuclease III [Enterococcus faecium TX0133a04]
 gi|314942847|ref|ZP_07849660.1| ribonuclease III [Enterococcus faecium TX0133C]
 gi|314948017|ref|ZP_07851421.1| ribonuclease III [Enterococcus faecium TX0082]
 gi|314950935|ref|ZP_07854004.1| ribonuclease III [Enterococcus faecium TX0133A]
 gi|314991417|ref|ZP_07856894.1| ribonuclease III [Enterococcus faecium TX0133B]
 gi|314995062|ref|ZP_07860182.1| ribonuclease III [Enterococcus faecium TX0133a01]
 gi|227180086|gb|EEI61058.1| ribonuclease III [Enterococcus faecium TX1330]
 gi|313590788|gb|EFR69633.1| ribonuclease III [Enterococcus faecium TX0133a01]
 gi|313593897|gb|EFR72742.1| ribonuclease III [Enterococcus faecium TX0133B]
 gi|313596944|gb|EFR75789.1| ribonuclease III [Enterococcus faecium TX0133A]
 gi|313598319|gb|EFR77164.1| ribonuclease III [Enterococcus faecium TX0133C]
 gi|313643031|gb|EFS07611.1| ribonuclease III [Enterococcus faecium TX0133a04]
 gi|313645615|gb|EFS10195.1| ribonuclease III [Enterococcus faecium TX0082]
          Length = 231

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 102/207 (49%), Gaps = 7/207 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           L++     F + +LLE+A THSS  + ++       ERLEFLGD +L L++S  LF  + 
Sbjct: 12  LKENYNIVFHDLNLLEQAFTHSSYVNEHRNLQLSDNERLEFLGDAVLELMVSQYLFRLYP 71

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+L+    ++V  ++ S+ A+E     ++ +             ++  D+ E+ + 
Sbjct: 72  HLPEGKLTKTRAAIVREDSLSKFAKECHFDQYVLLGKGEENSGGRTRPALLCDLFEAFLG 131

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182
           ALYLD G +    F++K    + +K+G F    D KT+LQE       V+ EY++    G
Sbjct: 132 ALYLDQGFDTTHAFIEKVIFPK-VKAGAFSHEMDHKTKLQEVLQKSGDVSIEYRLINEEG 190

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209
           P H+  F + V +       G   SK+
Sbjct: 191 PAHERVFWIEVYVDDQLIGTGQGKSKK 217


>gi|94469430|gb|ABF20205.1| ribonuclease III [Ehrlichia ruminantium]
 gi|100271805|gb|ABF69302.1| ribonuclease III [Ehrlichia ruminantium]
 gi|100271811|gb|ABF69306.1| ribonuclease III [Ehrlichia ruminantium]
 gi|100271844|gb|ABF69328.1| ribonuclease III [Ehrlichia ruminantium]
          Length = 137

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/131 (37%), Positives = 73/131 (55%)

Query: 92  DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151
           +L  FI +S   R    +  ++   + +E+LI A+YLDGG++ A  F+  +WK  A    
Sbjct: 1   NLGIFIIMSDGERSCGGAKNSNNLENALEALIGAIYLDGGLKAAKDFIFLFWKNSATHMK 60

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
              +DAKT LQEWA +K    P Y +  +SGPDH+P FTV V I           +K+ A
Sbjct: 61  VPPQDAKTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRIDSHETLHATGHNKKLA 120

Query: 212 EQVAAAEVLKR 222
           EQ AA+ +L++
Sbjct: 121 EQKAASLMLEK 131


>gi|152965344|ref|YP_001361128.1| ribonuclease III [Kineococcus radiotolerans SRS30216]
 gi|151359861|gb|ABS02864.1| Ribonuclease III [Kineococcus radiotolerans SRS30216]
          Length = 224

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/189 (33%), Positives = 97/189 (51%), Gaps = 9/189 (4%)

Query: 21  SLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
            LLE ALTH S  ++Y++    + ERLEFLGD +LGL+++  L+  F+   EG L+    
Sbjct: 6   GLLELALTHRS--YAYEQGGLPTNERLEFLGDSVLGLVVTHELYTRFEDVSEGRLAKLRA 63

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           ++V++   + +AR LDL + +R+            +SI AD +E++I A +L  G++ A 
Sbjct: 64  AVVNSRALADIARGLDLGAHVRLGKGELGTGGRDKSSILADTMEAVIGAAFLSVGMDGAR 123

Query: 137 TFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
            FV +        S +     D KT LQE   ++    P Y +T  SGPDH   FT    
Sbjct: 124 EFVLRLTSPLMDSSERLGAGTDWKTALQELTASEGLGVPSYAIT-DSGPDHAKNFTADAV 182

Query: 195 ISGLAPAQG 203
           + G     G
Sbjct: 183 VGGTVLGHG 191


>gi|69246105|ref|ZP_00603811.1| Ribonuclease III [Enterococcus faecium DO]
 gi|257878770|ref|ZP_05658423.1| ribonuclease III [Enterococcus faecium 1,230,933]
 gi|257881410|ref|ZP_05661063.1| ribonuclease III [Enterococcus faecium 1,231,502]
 gi|257885678|ref|ZP_05665331.1| ribonuclease III [Enterococcus faecium 1,231,501]
 gi|257887975|ref|ZP_05667628.1| ribonuclease III [Enterococcus faecium 1,141,733]
 gi|257890628|ref|ZP_05670281.1| ribonuclease III [Enterococcus faecium 1,231,410]
 gi|257893222|ref|ZP_05672875.1| ribonuclease III [Enterococcus faecium 1,231,408]
 gi|257896407|ref|ZP_05676060.1| ribonuclease III [Enterococcus faecium Com12]
 gi|257899381|ref|ZP_05679034.1| ribonuclease III [Enterococcus faecium Com15]
 gi|260558338|ref|ZP_05830534.1| ribonuclease III [Enterococcus faecium C68]
 gi|261207043|ref|ZP_05921732.1| ribonuclease III [Enterococcus faecium TC 6]
 gi|289565324|ref|ZP_06445774.1| ribonuclease III [Enterococcus faecium D344SRF]
 gi|293379492|ref|ZP_06625636.1| ribonuclease III [Enterococcus faecium PC4.1]
 gi|293556818|ref|ZP_06675379.1| ribonuclease III [Enterococcus faecium E1039]
 gi|293562991|ref|ZP_06677458.1| ribonuclease III [Enterococcus faecium E1162]
 gi|293567880|ref|ZP_06679221.1| ribonuclease III [Enterococcus faecium E1071]
 gi|293570730|ref|ZP_06681780.1| ribonuclease III [Enterococcus faecium E980]
 gi|294614479|ref|ZP_06694394.1| ribonuclease III [Enterococcus faecium E1636]
 gi|294618515|ref|ZP_06698077.1| ribonuclease III [Enterococcus faecium E1679]
 gi|294621998|ref|ZP_06701142.1| ribonuclease III [Enterococcus faecium U0317]
 gi|68195400|gb|EAN09847.1| Ribonuclease III [Enterococcus faecium DO]
 gi|257812998|gb|EEV41756.1| ribonuclease III [Enterococcus faecium 1,230,933]
 gi|257817068|gb|EEV44396.1| ribonuclease III [Enterococcus faecium 1,231,502]
 gi|257821534|gb|EEV48664.1| ribonuclease III [Enterococcus faecium 1,231,501]
 gi|257824029|gb|EEV50961.1| ribonuclease III [Enterococcus faecium 1,141,733]
 gi|257826988|gb|EEV53614.1| ribonuclease III [Enterococcus faecium 1,231,410]
 gi|257829601|gb|EEV56208.1| ribonuclease III [Enterococcus faecium 1,231,408]
 gi|257832972|gb|EEV59393.1| ribonuclease III [Enterococcus faecium Com12]
 gi|257837293|gb|EEV62367.1| ribonuclease III [Enterococcus faecium Com15]
 gi|260075512|gb|EEW63818.1| ribonuclease III [Enterococcus faecium C68]
 gi|260078671|gb|EEW66373.1| ribonuclease III [Enterococcus faecium TC 6]
 gi|289162814|gb|EFD10664.1| ribonuclease III [Enterococcus faecium D344SRF]
 gi|291589465|gb|EFF21272.1| ribonuclease III [Enterococcus faecium E1071]
 gi|291592656|gb|EFF24250.1| ribonuclease III [Enterococcus faecium E1636]
 gi|291595215|gb|EFF26546.1| ribonuclease III [Enterococcus faecium E1679]
 gi|291598425|gb|EFF29498.1| ribonuclease III [Enterococcus faecium U0317]
 gi|291600902|gb|EFF31193.1| ribonuclease III [Enterococcus faecium E1039]
 gi|291605117|gb|EFF34584.1| ribonuclease III [Enterococcus faecium E1162]
 gi|291609202|gb|EFF38474.1| ribonuclease III [Enterococcus faecium E980]
 gi|292642015|gb|EFF60181.1| ribonuclease III [Enterococcus faecium PC4.1]
          Length = 228

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 102/207 (49%), Gaps = 7/207 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           L++     F + +LLE+A THSS  + ++       ERLEFLGD +L L++S  LF  + 
Sbjct: 9   LKENYNIVFHDLNLLEQAFTHSSYVNEHRNLQLSDNERLEFLGDAVLELMVSQYLFRLYP 68

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+L+    ++V  ++ S+ A+E     ++ +             ++  D+ E+ + 
Sbjct: 69  HLPEGKLTKTRAAIVREDSLSKFAKECHFDQYVLLGKGEENSGGRTRPALLCDLFEAFLG 128

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182
           ALYLD G +    F++K    + +K+G F    D KT+LQE       V+ EY++    G
Sbjct: 129 ALYLDQGFDTTHAFIEKVIFPK-VKAGAFSHEMDHKTKLQEVLQKSGDVSIEYRLINEEG 187

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209
           P H+  F + V +       G   SK+
Sbjct: 188 PAHERVFWIEVYVDDQLIGTGQGKSKK 214


>gi|100271832|gb|ABF69320.1| ribonuclease III [Ehrlichia ruminantium]
          Length = 137

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/131 (37%), Positives = 73/131 (55%)

Query: 92  DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151
           +L  FI +S   R    +  ++   + +E+LI A+YLDGG++ A  F+  +WK  A    
Sbjct: 1   NLGIFIIMSDGERSCGGANNSNNLENALEALIGAIYLDGGLKAAKDFIFLFWKNSATHMK 60

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
              +DAKT LQEWA +K    P Y +  +SGPDH+P FTV V I+          +K+ A
Sbjct: 61  VPPQDAKTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVGINSHETLHATGQNKKLA 120

Query: 212 EQVAAAEVLKR 222
           EQ AA+ +L +
Sbjct: 121 EQKAASLMLAK 131


>gi|325963729|ref|YP_004241635.1| RNAse III [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469816|gb|ADX73501.1| RNAse III [Arthrobacter phenanthrenivorans Sphe3]
          Length = 242

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/208 (33%), Positives = 101/208 (48%), Gaps = 12/208 (5%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           L KR+G  F +   L  ALTH S ++      + ERLEFLGD ILG  ++  L+      
Sbjct: 7   LLKRLG-VFIDAGTLRLALTHRSYAYENGGIPTNERLEFLGDSILGFSVTDALYRDNPDL 65

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+L+ R +++VS    + + R L +  +I +    +        SI AD +E+LI A 
Sbjct: 66  PEGDLAKRRSAVVSTRALAGIGRSLGIGEYIYLGQGEKLTQGKNKASILADTMEALIGAT 125

Query: 127 YLDGGIEVAGTFVDKYWKQ-----RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           Y+   IE A   V +          AL +G    D KT +QE A ++   T  Y V   +
Sbjct: 126 YVSNDIETARQLVMRLIGPLLKDAAALGAGT---DWKTSIQELAASRQLGTIHYAVDG-T 181

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           GPDH   FT V+ + G A  +G   SK+
Sbjct: 182 GPDHARTFTAVLHVGGTAYGKGSGHSKK 209


>gi|294675193|ref|YP_003575809.1| ribonuclease III [Prevotella ruminicola 23]
 gi|294472646|gb|ADE82035.1| ribonuclease III [Prevotella ruminicola 23]
          Length = 342

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 120/231 (51%), Gaps = 25/231 (10%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           +S+L + +G+   N    + AL H SI     +    + ERLEFLGD IL   +  +++ 
Sbjct: 21  FSSLYEILGFYPHNIEYYKMALMHKSIRKRNDKGKPLNNERLEFLGDAILDAAVGYIVYR 80

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           H++  +EG L+   + LVS ET  ++A E+ L++ + +S+       S  + ++ +  E+
Sbjct: 81  HYEGKREGFLTNTRSKLVSRETLGKLATEMRLSNLL-ISAG---HSTSHNSYVEGNAFEA 136

Query: 122 LIAALYLDGGIE---------VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT 172
           L+ A+YLD G E         V G F+D    + A K   F    K++L EW+  K  V 
Sbjct: 137 LVGAIYLDRGYEACLWFFENQVLGKFID--IDKVAFKEVNF----KSKLLEWSQ-KNRVR 189

Query: 173 PEYKVTFRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            EYK+T +   ++  P FT +V I G+    G   SK+ A+Q A+ + L+R
Sbjct: 190 LEYKLTKQKKDENGSPVFTYMVIIEGVNGESGSGYSKKEAQQKASKDTLQR 240


>gi|293402241|ref|ZP_06646379.1| ribonuclease III [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304348|gb|EFE45599.1| ribonuclease III [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 227

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 110/217 (50%), Gaps = 8/217 (3%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           KRI Y   ++ L+ +AL HSS  + ++      ERLEF+GD +L L  +T LF       
Sbjct: 11  KRIPYT--DKELIRQALVHSSYVNEHKTFAHDNERLEFMGDAVLQLWSTTKLFKLTPELS 68

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG+++     LV  E  ++  R+L L  ++ +     K       SI AD+ E+++ A+Y
Sbjct: 69  EGQMTTLRAQLVCEEALAEYNRKLGLGRYLLLGVGEEKTGGRERDSILADMFEAVLGAIY 128

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           LD G++     +++     A+   K  +  D KT+LQE+  +    T  Y+    SGP +
Sbjct: 129 LDSGMDSINVILEEVLTP-AITQPKSEKVIDYKTKLQEYIQSDSRKTVHYETIHVSGPSN 187

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            P F V V +  +   +G   SK+ AEQ+AA +  ++
Sbjct: 188 KPEFEVAVMLDDITLGRGKGFSKKRAEQMAAKDAFEK 224


>gi|29840106|ref|NP_829212.1| ribonuclease III [Chlamydophila caviae GPIC]
 gi|33301541|sp|Q823R4|RNC_CHLCV RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|29834454|gb|AAP05090.1| ribonuclease III [Chlamydophila caviae GPIC]
          Length = 237

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 100/215 (46%), Gaps = 3/215 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISH---SYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           +E ++ + F    LL  ALTH S  +   +  E  ERLEFLGD +L L+++  LF  F S
Sbjct: 10  VEAKLNFTFTQPKLLVTALTHPSYRNETVTITEDSERLEFLGDAVLCLIVTEHLFLLFPS 69

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG LS    +L++A +C Q    L L   + +    R       TS  A++ E+++ A
Sbjct: 70  MDEGTLSTARAALINAVSCCQYTDALGLGEHLLIGKGERIQNERGRTSAYANLFEAVLGA 129

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           +YLDGG+  A          +         + K  LQ+    +    P Y+ T  +    
Sbjct: 130 VYLDGGLAPARQITVPLLPSKKDILPLMLGNPKNRLQQLTQKQLRTLPVYQCTPWTSQQG 189

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            P + + V ++     +G   SK+ AE++AA + L
Sbjct: 190 VPGYHIRVIVNDEVWGEGCALSKKEAEKLAAQKAL 224


>gi|86131058|ref|ZP_01049657.1| ribonuclease III [Dokdonia donghaensis MED134]
 gi|85818469|gb|EAQ39629.1| ribonuclease III [Dokdonia donghaensis MED134]
          Length = 245

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 107/211 (50%), Gaps = 12/211 (5%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           IG+   N ++ EKA TH S+    ++    +YERLEFLGD +LG +I+  LFN      E
Sbjct: 26  IGFKPKNLAIYEKAFTHRSLGLKKEDGNPLNYERLEFLGDAMLGSVIAAHLFNEVQGGNE 85

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G L+   + +VS +  +++ R+L+L  +++ S      + +F  +I  ++ E+L+ A+YL
Sbjct: 86  GYLTKMRSKVVSRKHLNELGRDLNLVRYVKASI----PIDNFGANIHGNLFEALVGAIYL 141

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           D G      F+ K   +  +   K        K+ L EW   K   T +++    +G D 
Sbjct: 142 DRGYRYCEKFIAKRVIEPYVDIEKLEGRIISYKSVLIEWCQ-KEKHTFKFETFEDTGQDA 200

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
              F V + I G   A+    SK+ AE++A+
Sbjct: 201 VKHFGVRLHIDGKIIAKARATSKKKAEEIAS 231


>gi|323489554|ref|ZP_08094781.1| ribonuclease 3 [Planococcus donghaensis MPA1U2]
 gi|323396685|gb|EGA89504.1| ribonuclease 3 [Planococcus donghaensis MPA1U2]
          Length = 251

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 104/223 (46%), Gaps = 7/223 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY----ERLEFLGDRILGLLISTLLFN 61
           +  L+K +   F   +LL +A THSS  + ++       ERLEFLGD +L L +S  L+ 
Sbjct: 23  FEQLQKELNITFKKPTLLYQAFTHSSYVNEHRRKQFTDNERLEFLGDAVLELSVSHYLYM 82

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +    EGEL+    ++V   +    A EL    +I +             ++ ADV ES
Sbjct: 83  KYPEMSEGELTKLRAAIVCEPSLVLFANELGFGKYILLGKGEELTGGRTRPALLADVFES 142

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179
            I ALYLD G+E   +F++     + +  G F    D K++LQE    K   T  Y++  
Sbjct: 143 YIGALYLDQGLEPVVSFLEMVLFPK-VDIGAFSHVMDYKSQLQELVQQKNTGTLSYEIID 201

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             GP H   F   V ++      G   SK+ AEQ AA   +++
Sbjct: 202 EIGPAHSRVFVTRVSLADRELGVGNGRSKKEAEQQAAQLAIRK 244


>gi|224025527|ref|ZP_03643893.1| hypothetical protein BACCOPRO_02267 [Bacteroides coprophilus DSM
           18228]
 gi|224018763|gb|EEF76761.1| hypothetical protein BACCOPRO_02267 [Bacteroides coprophilus DSM
           18228]
          Length = 308

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 118/225 (52%), Gaps = 14/225 (6%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNH 62
           Y    + +G+   N  + ++AL H S S   +    + ERLEFLGD IL  +++ +++  
Sbjct: 20  YLCFYRMLGFYPRNIEIYQQALLHKSSSVKEKGRLLNNERLEFLGDAILDAVVADIVYKK 79

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F+  +EG L+   + +V  ET +QVA ++ L   I+ ++       S  + +  +  E+L
Sbjct: 80  FEGKREGFLTNTRSKIVQRETLNQVAVQIGLDKLIKFTTRQ----SSHNSYMSGNAFEAL 135

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKVT 178
           + A+YLD G +    F+++    + L   K  R   + K++L EW+   KF V  E+++T
Sbjct: 136 VGAIYLDRGYDACKKFMEERIIAQYLNIDKISRKEVNFKSKLIEWSQKNKFEV--EFRLT 193

Query: 179 FRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            +S   D +P F   V +  +   +G   SK+ ++Q+AA E LK+
Sbjct: 194 GQSIDSDSNPIFETQVMVENIPAGEGKGYSKKESQQLAAQETLKQ 238


>gi|111225163|ref|YP_715957.1| ribonuclease III [Frankia alni ACN14a]
 gi|111152695|emb|CAJ64436.1| Ribonuclease III (RNase III) [Frankia alni ACN14a]
          Length = 272

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/207 (33%), Positives = 102/207 (49%), Gaps = 12/207 (5%)

Query: 16  AFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           A  +  LL++ALTH S ++      + ERLEFLGD +LGL+++  LF       EG+L+ 
Sbjct: 20  AAVDPELLDRALTHRSYAYEKGGLPTNERLEFLGDAVLGLVVTAALFLRHPDLPEGQLAK 79

Query: 74  RFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           +  S+V+    + VAR +    L  ++ +             SI AD +E++I A+YL  
Sbjct: 80  QRASVVNMRALADVARGIGPDGLGPYLLLGRGEETTGGRDKASILADTLEAIIGAVYLSA 139

Query: 131 GIEVAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           G++ A  FV    D    + A +      D KT LQE   A   + P   V   +GPDH 
Sbjct: 140 GLDAASIFVHRLFDPLLDEAAGRGAGL--DWKTSLQEQT-ALLALGPPEYVVEEAGPDHA 196

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            RFT    I+G    +G   SK+ AEQ
Sbjct: 197 KRFTAHARIAGEPLGEGEGGSKKEAEQ 223


>gi|18158946|pdb|1JFZ|A Chain A, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii
           Endonuclease Domain From Aquifex Aeolicus At 2.10
           Angstrom Resolution
 gi|18158947|pdb|1JFZ|B Chain B, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii
           Endonuclease Domain From Aquifex Aeolicus At 2.10
           Angstrom Resolution
 gi|18158948|pdb|1JFZ|C Chain C, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii
           Endonuclease Domain From Aquifex Aeolicus At 2.10
           Angstrom Resolution
 gi|18158949|pdb|1JFZ|D Chain D, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii
           Endonuclease Domain From Aquifex Aeolicus At 2.10
           Angstrom Resolution
 gi|47168733|pdb|1RC5|A Chain A, Crystal Structure Of Mg(Ii)-Complex Of Rnase Iii
           Endonuclease Domain From Aquifex Aeolicus At 2.30
           Angstrom Resolution
 gi|47168734|pdb|1RC5|B Chain B, Crystal Structure Of Mg(Ii)-Complex Of Rnase Iii
           Endonuclease Domain From Aquifex Aeolicus At 2.30
           Angstrom Resolution
 gi|47168735|pdb|1RC5|C Chain C, Crystal Structure Of Mg(Ii)-Complex Of Rnase Iii
           Endonuclease Domain From Aquifex Aeolicus At 2.30
           Angstrom Resolution
 gi|47168736|pdb|1RC5|D Chain D, Crystal Structure Of Mg(Ii)-Complex Of Rnase Iii
           Endonuclease Domain From Aquifex Aeolicus At 2.30
           Angstrom Resolution
          Length = 154

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/123 (42%), Positives = 75/123 (60%), Gaps = 8/123 (6%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LEK++GY F ++SLLEKALTH  +S+S +E YE LEFLGD ++   I  LL  +  + +E
Sbjct: 8   LEKKLGYTFKDKSLLEKALTH--VSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKRE 65

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G LS     L+S E  + +A++L+L  FIR+             +I  DV E+L AA+Y+
Sbjct: 66  GFLSPLKAYLISEEFFNLLAQKLELHKFIRIKR------GKINETIIGDVFEALWAAVYI 119

Query: 129 DGG 131
           D G
Sbjct: 120 DSG 122


>gi|18158935|pdb|1I4S|A Chain A, Crystal Structure Of Rnase Iii Endonuclease Domain From
           Aquifex Aeolicus At 2.15 Angstrom Resolution
 gi|18158936|pdb|1I4S|B Chain B, Crystal Structure Of Rnase Iii Endonuclease Domain From
           Aquifex Aeolicus At 2.15 Angstrom Resolution
          Length = 147

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/123 (42%), Positives = 75/123 (60%), Gaps = 8/123 (6%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LEK++GY F ++SLLEKALTH  +S+S +E YE LEFLGD ++   I  LL  +  + +E
Sbjct: 7   LEKKLGYTFKDKSLLEKALTH--VSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKRE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G LS     L+S E  + +A++L+L  FIR+             +I  DV E+L AA+Y+
Sbjct: 65  GFLSPLKAYLISEEFFNLLAQKLELHKFIRIKR------GKINETIIGDVFEALWAAVYI 118

Query: 129 DGG 131
           D G
Sbjct: 119 DSG 121


>gi|256372281|ref|YP_003110105.1| ribonuclease III [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008865|gb|ACU54432.1| ribonuclease III [Acidimicrobium ferrooxidans DSM 10331]
          Length = 263

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 101/211 (47%), Gaps = 20/211 (9%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           I  A  +  ++ +AL H S S    +S ERLEFLGD ++ L++S  L+  +    EG L+
Sbjct: 15  IPAALRDHPVVRQALVHKSASRDPLDSNERLEFLGDAVIELVVSDYLYRRYPDVDEGRLT 74

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
              ++LVS  +   V  +  L   I V         +    + A+ VE+L  A+YL GG 
Sbjct: 75  QVRSALVSRRSLGSVGVQGGLLEAITVGQ-----ADALGPVLAANAVEALAGAVYLAGGF 129

Query: 133 EVAGTFVDKYWKQRALKSGKFRR--------DAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           +++  FV       A+      R        D K+ L +         P YKV++ SGPD
Sbjct: 130 QLSVAFV------LAILGPSLERVDGDLVLGDYKSLLHQALAKLHHQPPRYKVSW-SGPD 182

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           HD R+ VVV++ G   A G   S++ AEQ A
Sbjct: 183 HDRRYRVVVQLPGGFEAAGEGASRKEAEQEA 213


>gi|241888745|ref|ZP_04776051.1| ribonuclease III [Gemella haemolysans ATCC 10379]
 gi|241864421|gb|EER68797.1| ribonuclease III [Gemella haemolysans ATCC 10379]
          Length = 237

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 109/223 (48%), Gaps = 9/223 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLLFNH 62
           + L +  G+        + + +HSS ++    +   +YERLEFLGD ++ L  S  LF  
Sbjct: 11  NNLNEEYGFNLKFSENFKNSFSHSSYTNEKRIAKHLNYERLEFLGDAVVELTTSEFLFKK 70

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EGEL+    S+V  +T  + A +L L   I +     K       ++ AD+ ES 
Sbjct: 71  FSELPEGELTKLRASIVCEKTLVKYALQLSLDKCIYLGKGEEKMGGRSRAALLADIFESF 130

Query: 123 IAALYLDGGIEVAGTFVDK--YWKQRALKSGKFRRDAKTELQEW-AHAKFGVTPEYKVTF 179
             A+YL+  +EV  TF++   + + + L+   F  D KT LQE+ +  K G   EY V  
Sbjct: 131 TGAMYLESNLEVVKTFLNNTLFTEVQDLEYHSF-VDYKTILQEYISKIKLG-EIEYVVLD 188

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            SGP H   FT  V I       G   +K+ +EQ++A + L++
Sbjct: 189 SSGPSHSKTFTSAVLIGRKQYGSGTATTKKESEQLSAKQALEK 231


>gi|62184964|ref|YP_219749.1| ribonuclease III [Chlamydophila abortus S26/3]
 gi|81312866|sp|Q5L6E3|RNC_CHLAB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|62148031|emb|CAH63783.1| ribonuclease III [Chlamydophila abortus S26/3]
          Length = 237

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 99/215 (46%), Gaps = 3/215 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISH---SYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           +E ++ + F    LL  ALTH S  +   +  E  ERLEFLGD +L L+++  LF  F S
Sbjct: 10  VEAKLNFTFTQPKLLVTALTHPSYRNETATITEDSERLEFLGDAVLCLIVTEHLFLLFPS 69

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG LS    +L++A +C Q    L L  ++ +    R       TS  A++ E+++ A
Sbjct: 70  MDEGTLSTARAALINAVSCCQYTDALGLGEYLLIGKGERIQNERGKTSAYANLFEAILGA 129

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           +YLDGG+  A          +         + K  LQ+         P Y+    + P  
Sbjct: 130 VYLDGGLAPARQITVPLLPSKKDILPLMLGNPKNRLQQLTQKHLRTLPVYQYEPWTSPQG 189

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
              + + V ++     +G   SK+ AE++AA + L
Sbjct: 190 ASGYHIRVLVNHEVWGEGFALSKKEAEKLAAQQAL 224


>gi|257866576|ref|ZP_05646229.1| ribonuclease III [Enterococcus casseliflavus EC30]
 gi|257872908|ref|ZP_05652561.1| ribonuclease III [Enterococcus casseliflavus EC10]
 gi|257876180|ref|ZP_05655833.1| ribonuclease III [Enterococcus casseliflavus EC20]
 gi|325567330|ref|ZP_08143997.1| ribonuclease III [Enterococcus casseliflavus ATCC 12755]
 gi|257800534|gb|EEV29562.1| ribonuclease III [Enterococcus casseliflavus EC30]
 gi|257807072|gb|EEV35894.1| ribonuclease III [Enterococcus casseliflavus EC10]
 gi|257810346|gb|EEV39166.1| ribonuclease III [Enterococcus casseliflavus EC20]
 gi|325158763|gb|EGC70909.1| ribonuclease III [Enterococcus casseliflavus ATCC 12755]
          Length = 230

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 103/211 (48%), Gaps = 7/211 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESY----ERLEFLGDRILGLLISTLLFNHFD 64
           L+++    F +  LLE+A THSS  + ++  +    ERLEFLGD +L L++S  L+    
Sbjct: 9   LKEKFDIVFHDVDLLEQAFTHSSYVNEHRNLHLSDNERLEFLGDAVLELIVSRYLYRELP 68

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+L+    ++V  ++ S  A++     +IR+             S+  D+ E+ + 
Sbjct: 69  DLPEGKLTKLRAAIVREDSLSMFAKDCRFDEYIRLGKGEENSGGRKRPSLLCDLFEAFLG 128

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182
           ALYLD G+E    F+ K    + +K+G F    D KT LQE       V+  Y++   +G
Sbjct: 129 ALYLDQGLESVSGFLTKVVFPK-VKAGAFSHEMDHKTRLQEVLQRGGDVSINYRLIKEAG 187

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
           P H+  F   V        +G   SK+ +EQ
Sbjct: 188 PAHERIFWTEVYCDDTLIGKGQGKSKKLSEQ 218


>gi|227548991|ref|ZP_03979040.1| ribonuclease III [Corynebacterium lipophiloflavum DSM 44291]
 gi|227078942|gb|EEI16905.1| ribonuclease III [Corynebacterium lipophiloflavum DSM 44291]
          Length = 254

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/200 (34%), Positives = 100/200 (50%), Gaps = 7/200 (3%)

Query: 22  LLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           +L  ALTH S +  H    + ERLEFLGD +LGL ++  L+  F S  E ++S    S+V
Sbjct: 39  ILRLALTHRSFANEHGPLPNNERLEFLGDAVLGLSVANSLYERFPSRPESDISKMRASIV 98

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
           S    + VARE+ L + + +             SI AD  E+L  A+Y   G E A   V
Sbjct: 99  SRYGLADVAREIGLGAHVLLGRGEEVTGGRDKDSILADTTEALFGAIYRQHGFEPARDVV 158

Query: 140 DKYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
            + ++ +   A  +G+  +D KT LQE          EY+ T   GPDHD  FT  V + 
Sbjct: 159 LRLFESKLESATATGRH-QDWKTVLQERLAELKAPAAEYRAT-SVGPDHDQTFTADVFVG 216

Query: 197 GLAPAQGMDCSKRAAEQVAA 216
             +  +G+  +K+ AEQ AA
Sbjct: 217 EDSRGRGVGPNKKLAEQEAA 236


>gi|317495799|ref|ZP_07954162.1| ribonuclease III [Gemella moribillum M424]
 gi|316913976|gb|EFV35459.1| ribonuclease III [Gemella moribillum M424]
          Length = 237

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/206 (33%), Positives = 100/206 (48%), Gaps = 9/206 (4%)

Query: 26  ALTHSSISH----SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
           A +HSS ++    +   +YERLEFLGD ++ L  S  LF  F    EGEL+    S+V  
Sbjct: 30  AFSHSSYTNEKKIAKHLNYERLEFLGDAVVELTTSEFLFKKFPKLAEGELTKLRASIVCE 89

Query: 82  ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141
           +T  + A +L+L   I +     K       ++ AD+ ES   ALYL+  +E    F++ 
Sbjct: 90  KTLVKYALQLNLDKCIYLGRGEEKMGGRSRAALLADIFESFTGALYLETNLETVKIFLNN 149

Query: 142 --YWKQRALKSGKFRRDAKTELQEWAHA-KFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
             + +    +   F  D KT LQE+    K G   EYKV    GP H   F   VEI G 
Sbjct: 150 TLFTEVEDYEYSSF-VDYKTILQEYVFKIKLG-EIEYKVLDSIGPSHSKTFISAVEIDGK 207

Query: 199 APAQGMDCSKRAAEQVAAAEVLKREG 224
               G   +K+ +EQ++A + L + G
Sbjct: 208 QYGSGTAATKKESEQLSAKQALDKLG 233


>gi|213964554|ref|ZP_03392754.1| ribonuclease III [Corynebacterium amycolatum SK46]
 gi|213952747|gb|EEB64129.1| ribonuclease III [Corynebacterium amycolatum SK46]
          Length = 242

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 106/218 (48%), Gaps = 6/218 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLF 60
           A+ ++ L  ++G      SL + ALTH S ++      + ERLEFLGD +LG+ ++  L+
Sbjct: 19  AVDHAPLLDKLGVELPEESL-KLALTHRSFANENGMLTNNERLEFLGDAVLGVCVAEELY 77

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    E ++S     +V+    + +AR + L   I +    +    +   SI AD  E
Sbjct: 78  RRFPDRAEQDISKMRAGVVNMYALADLARSIGLGEHILLGRGEKATGGADKHSILADTTE 137

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +L+ A+YL  G EVA   V + + Q      +    RD KT LQE   AK     EY V 
Sbjct: 138 ALLGAIYLQHGFEVARETVLRLFNQMIDDAPTESRGRDWKTLLQERLAAKQLPAAEYTVR 197

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             +GPDHD  F V V + G+    G   +K+ AE  AA
Sbjct: 198 -TTGPDHDLTFYVDVLVDGVVKGSGTGATKKEAEMHAA 234


>gi|172038048|ref|YP_001804549.1| ribonuclease III [Cyanothece sp. ATCC 51142]
 gi|171699502|gb|ACB52483.1| ribonuclease III [Cyanothece sp. ATCC 51142]
          Length = 242

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 109/204 (53%), Gaps = 7/204 (3%)

Query: 19  NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           N  LL+ ALTH +IS   + +Y++LEF+GD ++ L+ + +L   +     GE +   + L
Sbjct: 30  NLELLDLALTHPTISR--ETNYQQLEFVGDSVIRLVSAEILLETYPDELVGEFAAIRSIL 87

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIEVAGT 137
           VS  T ++ A +  L  ++ ++  + +D    ++ + AD  E+++ ALYL    + +   
Sbjct: 88  VSDRTLAEFAEQYGLDRYLLMADSVAQDTMGRVSWL-ADAFEAVLGALYLSTKNMTLVRP 146

Query: 138 FVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR-SGPDHDPRFTVVVE 194
           ++D    ++A  ++S   R++ K  LQEW  A++ + P+Y+VT +     HD RF   V 
Sbjct: 147 WLDPLLLKKAAEIRSDPARQNYKDALQEWTQAQYKILPDYRVTEQHKDRGHDERFFAEVS 206

Query: 195 ISGLAPAQGMDCSKRAAEQVAAAE 218
           +       G   SK+ AEQ AA +
Sbjct: 207 LKDRKLGSGYGRSKKMAEQAAAKD 230


>gi|314936605|ref|ZP_07843952.1| ribonuclease III [Staphylococcus hominis subsp. hominis C80]
 gi|313655224|gb|EFS18969.1| ribonuclease III [Staphylococcus hominis subsp. hominis C80]
          Length = 243

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 102/214 (47%), Gaps = 11/214 (5%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           K +G ++ +  + ++A +HSS  + +        ERLEFLGD +L L +S  LF+ + + 
Sbjct: 21  KMLGLSYTHVDVYQQAFSHSSFINDFNMDRLAHNERLEFLGDAVLELTVSRYLFDKYPNL 80

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG L+    ++V   +    A +++L   I +     K       S+ +D  E+ I AL
Sbjct: 81  PEGNLTKMRATIVCEPSLVIFANKIELNQLILLGKGEEKTGGRTRPSLVSDAFEAFIGAL 140

Query: 127 YLDGGIEVAGTFVDK----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           YLD G+EV   F  K    Y +   L       D KT+ QE+ H++      Y +    G
Sbjct: 141 YLDQGLEVVWKFAQKVIFPYVEHNELIG---VVDFKTQFQEYIHSQSKGDVTYHLIKEEG 197

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           P H   FT  V +   A A+G   +K+ +EQ AA
Sbjct: 198 PAHHRLFTSEVILENKAIAKGQGRTKKESEQKAA 231


>gi|228474955|ref|ZP_04059683.1| ribonuclease III [Staphylococcus hominis SK119]
 gi|228270940|gb|EEK12328.1| ribonuclease III [Staphylococcus hominis SK119]
          Length = 243

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 102/214 (47%), Gaps = 11/214 (5%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           K +G ++ +  + ++A +HSS  + +        ERLEFLGD +L L +S  LF+ + + 
Sbjct: 21  KMLGLSYTHLDVYQQAFSHSSFINDFNMDRLAHNERLEFLGDAVLELTVSRYLFDKYPNL 80

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG L+    ++V   +    A +++L   I +     K       S+ +D  E+ I AL
Sbjct: 81  PEGNLTKMRATIVCEPSLVIFANKIELNQLILLGKGEEKTGGRTRPSLVSDAFEAFIGAL 140

Query: 127 YLDGGIEVAGTFVDK----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           YLD G+EV   F  K    Y +   L       D KT+ QE+ H++      Y +    G
Sbjct: 141 YLDQGLEVVWKFAQKVIFPYVEHNELIG---VVDFKTQFQEYIHSQSKGDVTYHLIKEEG 197

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           P H   FT  V +   A A+G   +K+ +EQ AA
Sbjct: 198 PAHHRLFTSEVILENKAIAKGQGRTKKESEQKAA 231


>gi|269838233|ref|YP_003320461.1| ribonuclease III [Sphaerobacter thermophilus DSM 20745]
 gi|269787496|gb|ACZ39639.1| ribonuclease III [Sphaerobacter thermophilus DSM 20745]
          Length = 259

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/210 (33%), Positives = 99/210 (47%), Gaps = 12/210 (5%)

Query: 11  KRIGYAFANRSLLEKALTHSS------ISH--SYQESYERLEFLGDRILGLLISTLLFNH 62
           +R+G  F +  LL  ALTH S      IS   + ++S ERLEFLGD +LG++ +  L+  
Sbjct: 24  QRLGIEFRDLDLLRLALTHRSYLNELGISQIEAVRDSNERLEFLGDSVLGMITAEFLYRR 83

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L+    +LV  ET ++ AR   L   + +              I A   E++
Sbjct: 84  FPRLPEGMLTAYRTALVRTETLARWARRFGLDELLYLGRGEITADGEIRDRILAGAFEAV 143

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA---LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           IAA+YLD GI     F+ +   + A   +  G+   + K  LQE       VTP Y+   
Sbjct: 144 IAAIYLDRGIRATRRFLRQLLIEDAEQIITEGQ-ETNYKGRLQELVQEHMRVTPMYRTVA 202

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            SGP HD  FTV V + G     G   SKR
Sbjct: 203 VSGPAHDRVFTVEVVVGGECLGVGTGSSKR 232


>gi|239636288|ref|ZP_04677290.1| ribonuclease III [Staphylococcus warneri L37603]
 gi|239597643|gb|EEQ80138.1| ribonuclease III [Staphylococcus warneri L37603]
          Length = 243

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 101/218 (46%), Gaps = 11/218 (5%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +G+ + N  L ++A +HSS  + +     +  ERLEFLGD +L L +S  LF+      E
Sbjct: 24  LGFEYNNIELYQQAFSHSSFINDFNMDRLDHNERLEFLGDAVLELTVSRYLFDKHPDLPE 83

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G L+    ++V   +    A ++ L   I +     K       S+ +D  E+ + ALYL
Sbjct: 84  GNLTKMRATIVCEPSLVIFANKIKLNELILLGKGEEKTGGRTRPSLISDAFEAFVGALYL 143

Query: 129 DGGIEVAGTFVDK----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           D G++    F DK    Y +   L       D KT+ QE+ H +      Y++    GP 
Sbjct: 144 DQGLDTVWDFADKIIFPYVEDDELDG---VVDFKTQFQEFVHRQNKGDVTYRLIKEEGPA 200

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           H   FT  V +   A A+G   +K+ +EQ AA    K+
Sbjct: 201 HHRLFTSEVILEKQAIAEGQGKTKKESEQKAAERAYKQ 238


>gi|47225092|emb|CAF98719.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 290

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/190 (34%), Positives = 96/190 (50%), Gaps = 10/190 (5%)

Query: 41  ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
           +R+EFLGD I+ L+ +  LF HF    EG L++  +SLV+  T ++VA EL +  F  ++
Sbjct: 61  QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFA-IT 119

Query: 101 SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DA 157
           +D  K      T   AD++ES IAALY+D  +E   TF++  +  R LK     +   D 
Sbjct: 120 NDKTKRPVVLRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDP 178

Query: 158 KTELQEWA-----HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           K++LQ+         K    P YK     GP H   +TV V   G     G   S + AE
Sbjct: 179 KSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGDRIGCGKGPSIQQAE 238

Query: 213 QVAAAEVLKR 222
             AA + L++
Sbjct: 239 MGAAMDALEK 248


>gi|229820101|ref|YP_002881627.1| ribonuclease III [Beutenbergia cavernae DSM 12333]
 gi|229566014|gb|ACQ79865.1| ribonuclease III [Beutenbergia cavernae DSM 12333]
          Length = 252

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/215 (33%), Positives = 106/215 (49%), Gaps = 8/215 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
           + +E+R+G    +  L   A TH S +H      + ERLEFLGD +LG++I+  LF    
Sbjct: 18  AAVEERLGVGI-DPELAVLAFTHRSFAHEAGGIPTNERLEFLGDSVLGVVITDHLFRSRP 76

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            + EGEL+    + VS    + VAREL L   + +             SI +D +E++I 
Sbjct: 77  DSSEGELAKMRAACVSQRALAVVARELRLGEHLLLGKGESATGGRDKDSILSDTLEAVIG 136

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGV-TPEYKVTFRS 181
           A+YL  G+EV    + +        + +     D KT LQE + A+ G+  P Y V    
Sbjct: 137 AVYLTNGLEVVRDVLLRLLGPSLAVAAELGAGLDWKTSLQELS-AELGLGAPLYDVDG-V 194

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           GPDHD RFT  V I+      G   +K+ AEQ AA
Sbjct: 195 GPDHDRRFTAHVVIAERVWGSGTGSAKKHAEQEAA 229


>gi|94469424|gb|ABF20201.1| ribonuclease III [Ehrlichia ruminantium]
          Length = 145

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 77/137 (56%)

Query: 86  QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145
           ++A+ ++L  FI +S   R    +  ++   + +E+LI A+YLDGG++ A  F+  + K 
Sbjct: 3   EIAQSINLGIFIIMSDGERSCGGAKNSNNLENALEALIGAIYLDGGLKAAKDFIFLFRKN 62

Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205
            A       +DAKT LQEWA +K    P Y +  +SGPDH+P FTV V I          
Sbjct: 63  SATHMKVPPQDAKTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRIDSHETLHATG 122

Query: 206 CSKRAAEQVAAAEVLKR 222
            +K+ AEQ AA+ +L++
Sbjct: 123 HNKKLAEQKAASLMLEK 139


>gi|297571639|ref|YP_003697413.1| ribonuclease III [Arcanobacterium haemolyticum DSM 20595]
 gi|296931986|gb|ADH92794.1| ribonuclease III [Arcanobacterium haemolyticum DSM 20595]
          Length = 235

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/199 (33%), Positives = 105/199 (52%), Gaps = 6/199 (3%)

Query: 22  LLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
           LL  ALTH S +  ++  + ERLEF+GD ILG +++  +F+ +    EGELS   ++ VS
Sbjct: 21  LLTLALTHRSWAFEHECGNNERLEFMGDSILGAVVAEQIFHDYPEKSEGELSKIKSAAVS 80

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140
               + +AR L+L ++IR+     +       SI AD VE+LIAA Y  GG+ V  + V 
Sbjct: 81  ERALAGIARGLNLGAYIRLGKGEERTGGRDKDSILADTVEALIAATYEAGGLRVVISTVR 140

Query: 141 KYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF-RSGPDHDPRFTVVVEISG 197
            +   + +++ +     D +T ++E A  + G+  E   T    GPDH   +T  V I  
Sbjct: 141 HHLHAKIIEATQMGPALDWRTGMEEKAR-ELGIAGELSYTIVGEGPDHAKVYTARVFIGE 199

Query: 198 LAPAQGMDCSKRAAEQVAA 216
               +G D + R A ++AA
Sbjct: 200 TEWGRG-DATSRKASKLAA 217


>gi|182414805|ref|YP_001819871.1| ribonuclease III [Opitutus terrae PB90-1]
 gi|177842019|gb|ACB76271.1| Ribonuclease III [Opitutus terrae PB90-1]
          Length = 250

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/216 (32%), Positives = 104/216 (48%), Gaps = 6/216 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           + L+ R+ Y F + +LLE+A+TH+S    +    ES +RLEFLGD +L L+++  LF  F
Sbjct: 25  AALQTRLIYTFRDPALLERAVTHTSYLPENPDIAESNQRLEFLGDAVLQLILTEALFELF 84

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
              +EG LS R  +L       ++AREL L   + + S          +S   D  E+L+
Sbjct: 85  PGDREGPLSRRRAALTKGAFLVELARELQLDRCLLLGSSEEASGGRTRSSALEDAFEALV 144

Query: 124 AALYLDGGIEVAGTFV-DKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTP-EYKVTFR 180
            ALYLD  + +    V   Y    +  SG     + K  LQE    ++G     Y+VT  
Sbjct: 145 GALYLDSDLALTRRIVLGLYGDLPSRLSGVVNEENPKGRLQELIQPEYGNQALRYEVTGI 204

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            G DH   + V V +       G   SK+ AE+ AA
Sbjct: 205 EGEDHARAYEVAVFLHDRVLGSGRGPSKKLAEEAAA 240


>gi|313224789|emb|CBY20581.1| unnamed protein product [Oikopleura dioica]
          Length = 538

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 110/227 (48%), Gaps = 11/227 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNH 62
           R + LE+ +G  F N  LL KALT  ++ ++   +   +RLEFLGD I   L +  LF H
Sbjct: 210 RCAELEELLGVKFKNIRLLAKALTLKNVKYNDITKGHNQRLEFLGDAICNFLAAEYLFKH 269

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L++   ++V A T + VA+++ L  F+     L  D   +   I AD++ES 
Sbjct: 270 FPLHHEGHLTLLRCTMVGAPTQALVAQQIGLDKFVISRQSLSHDKMGWKQKILADLMESF 329

Query: 123 IAALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWA---HAKFGVT--PEY 175
           I AL++D GI     F  V  Y + +     +   D K+ LQ+       + G    PEY
Sbjct: 330 IGALFIDRGIIAVDVFMKVAFYPRLKHFIMSQVWNDPKSCLQQCCLTLRPEEGTPDLPEY 389

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           + T  +      R+ V V   G    +G   S + AE+ AA + L++
Sbjct: 390 RTTTSNSSKM--RYRVEVFFRGERIGEGHGPSIQLAEKFAARKALEK 434



 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 59/97 (60%), Gaps = 8/97 (8%)

Query: 41  ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLAS-FIRV 99
           ER EFLGD +LG ++S  +F+ F +  EG LS+   +LV     + +A++L L   F+ +
Sbjct: 70  ERPEFLGDAVLGFVVSVSIFHLFPNLGEGALSMLRCALVCNVHLAALAQKLTLEDYFVYI 129

Query: 100 -SSDL--RKDVCSFMTSIQADVVESLIAALYLDGGIE 133
            S DL  R+D    + +  A+  E+++ A+Y+DGG+E
Sbjct: 130 HSQDLAKRED----LNNALANCFEAVLGAIYMDGGLE 162


>gi|197294673|ref|YP_001799214.1| DsRNA-specific ribonuclease [Candidatus Phytoplasma australiense]
 gi|171854000|emb|CAM11965.1| DsRNA-specific ribonuclease [Candidatus Phytoplasma australiense]
          Length = 222

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/216 (31%), Positives = 108/216 (50%), Gaps = 9/216 (4%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           K++     N +L  KALTHSS S+     QE+ ERLEFLGD I+GLL++  L+   +   
Sbjct: 8   KKLNIVPKNIALYRKALTHSSYSNEKEFLQENNERLEFLGDAIIGLLMADYLYQK-NKEN 66

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFMTSIQADVVESLIAAL 126
           EG ++ +    V  ++ +  A+ ++L +++ +   +  KD  +   SI AD  E+L  A+
Sbjct: 67  EGVMTKKRAQAVCEKSLTIYAKSINLQNYLFLGKGEKNKDFNT--KSIIADAFEALFGAI 124

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           YLD G   A     +       K+     D KT+LQE   ++  +  +YK+    GP H 
Sbjct: 125 YLDLGYNSAKKVFQRLVIPHLPKAIDI-IDFKTQLQEIVQSEKKII-QYKIVSEEGPAHS 182

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            +F   V +       G   +K+ AEQ AA E L +
Sbjct: 183 KKFIAEVYLDKKILGSGEGTTKKEAEQKAAQEALSK 218


>gi|321309555|ref|YP_004191884.1| ribonuclease III [Mycoplasma haemofelis str. Langford 1]
 gi|319801399|emb|CBY92045.1| ribonuclease III [Mycoplasma haemofelis str. Langford 1]
          Length = 229

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 103/219 (47%), Gaps = 13/219 (5%)

Query: 9   LEKRIGYAFANRSLLEKALTHSS---ISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           L K  G    +++L  KA THSS    + +++  YE+LEFLGD ++GL I++ LF     
Sbjct: 11  LNKSFGLTIKDKNLFTKAFTHSSYKGCNPNFKGDYEKLEFLGDSVIGLSIASELFKR--D 68

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
              G +S   + +VS  + + V R+LD  ++IRV +      C    SI  DV E+ I A
Sbjct: 69  ISLGAISTSKDQIVSGSSLAYVGRKLDFHNYIRVGN----SCCVISDSIIEDVYEAFIGA 124

Query: 126 LYLDGGIEVAGTFV-DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV--TFRSG 182
           +Y + G E A   V    W    +    F  D KT+L      K+     Y +  +F S 
Sbjct: 125 VYCEFGFETARKIVLSSLWNYFLMGELDFYFDYKTKLNTLVGQKYKGKVTYTLIDSFPS- 183

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            D    F V    +  + + G+  + + AEQ AA + L 
Sbjct: 184 KDGSTTFKVSASWNNDSLSIGLGTTLKKAEQAAAQDALN 222


>gi|308494532|ref|XP_003109455.1| CRE-DRSH-1 protein [Caenorhabditis remanei]
 gi|308246868|gb|EFO90820.1| CRE-DRSH-1 protein [Caenorhabditis remanei]
          Length = 1073

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 107/225 (47%), Gaps = 16/225 (7%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHF 63
            +  LE  +   F N  LL KA T  ++ H+   +   +RLE+LGD +L L++S  LF  +
Sbjct: 821  FHKLENILNIKFNNIRLLAKAFTRRNVPHNDLTKGHNQRLEWLGDSVLQLVVSDYLFRRY 880

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
                EG +S+   SLVS +T S V  +L    F+                 +AD+VE+ I
Sbjct: 881  PLHHEGHMSLLRTSLVSNQTQSVVCDDLGFLEFVVKPP---HKTPELKMKDKADLVEAFI 937

Query: 124  AALYLDGGIEVAGTFVDKYWKQRA---LKSGKFRRDAKTELQEW------AHAKFGVTPE 174
             ALY+D GIE   +F+   +  R    + S ++  DAK+ LQ+W      A       P+
Sbjct: 938  GALYVDRGIEHCRSFIRIVFCPRLKHFINSEQW-NDAKSHLQQWCLAIRDAQNPNPAMPD 996

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            Y++    GP ++  F V V   G   A   + +   AE + AAE+
Sbjct: 997  YRILSIEGPTNNRIFKVGVYFRGKRLASAAESNVHKAE-LKAAEI 1040



 Score = 41.6 bits (96), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 4/94 (4%)

Query: 41  ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
           ERLE+LGD ++ L++S  L+       EG L+    +LV     + +A+   +   ++ +
Sbjct: 679 ERLEYLGDAVVELIVSHHLYFMLPHHFEGGLATYRTALVQNRNLADLAKNCRIDEMLQYA 738

Query: 101 --SDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
             +DL  +  +      A+  E+++AA+YLDGG+
Sbjct: 739 HGADLINE--AEWKHALANAFEAVVAAVYLDGGL 770


>gi|298245671|ref|ZP_06969477.1| ribonuclease III [Ktedonobacter racemifer DSM 44963]
 gi|297553152|gb|EFH87017.1| ribonuclease III [Ktedonobacter racemifer DSM 44963]
          Length = 251

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 120/227 (52%), Gaps = 14/227 (6%)

Query: 9   LEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE  +   F +RSLL +A+TH S     + ++SY+ LEFLGD I+   +   ++  F +A
Sbjct: 13  LEALLQVTFHDRSLLLRAITHHSCCTETALRDSYDTLEFLGDAIISAHVVEYIYRSFPNA 72

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVS-SDLRKDVCSFMTSIQADVVESLIAA 125
            EG+++   + +VS    + + ++L L  FIRV  ++LR        S+ ADV+E+L+ A
Sbjct: 73  SEGDMTALKSEVVSRRVFALIGQQLGLFPFIRVDIANLRTFNERSRDSLCADVLEALVGA 132

Query: 126 LYLDGGIEVAGTFVDK----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +++D G EVA  FV +      +Q ++++     + K  LQ+    + G  P Y+V  +S
Sbjct: 133 IHIDQGSEVARDFVARAILPMVEQISVQADT---NPKGRLQKIILQRTGSLPRYRVLEQS 189

Query: 182 GPDHDPRFTVVV----EISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           G ++D  F V V     + GL  A  +  + R A + A   + K+ G
Sbjct: 190 GRNNDRIFLVGVYDQETLLGLGKASSIKEAGRLAAREALEALQKQRG 236


>gi|70726682|ref|YP_253596.1| ribonuclease III [Staphylococcus haemolyticus JCSC1435]
 gi|90101647|sp|Q4L5T5|RNC_STAHJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|68447406|dbj|BAE04990.1| ribonuclease III [Staphylococcus haemolyticus JCSC1435]
          Length = 245

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 101/214 (47%), Gaps = 11/214 (5%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSA 66
             +G+ ++N  L ++A +HSS  + +        ERLEFLGD +L L +S  LF+     
Sbjct: 22  NELGFTYSNIDLYQQAFSHSSFINDFNMDRLAHNERLEFLGDAVLELTVSRYLFDKHPDL 81

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG L+    ++V   +    A +++L   I +     K       S+ +D  E+ + AL
Sbjct: 82  PEGNLTKMRATIVCEPSLVIFANKIELNQLILLGKGEEKTGGRTRPSLVSDAFEAFVGAL 141

Query: 127 YLDGGIEVAGTFVDK----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           YLD G++V   F +K    Y +   L       D KT+ QE+ H++      Y++    G
Sbjct: 142 YLDQGLDVVWQFAEKVIFPYVEDDELVG---VVDFKTQFQEYVHSQNRGDVTYRLIKEEG 198

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           P H   FT  V +   A A G   +K+ +EQ AA
Sbjct: 199 PAHHRLFTSEVILENEAVATGQGKTKKESEQKAA 232


>gi|124004144|ref|ZP_01688990.1| ribonuclease III [Microscilla marina ATCC 23134]
 gi|123990214|gb|EAY29713.1| ribonuclease III [Microscilla marina ATCC 23134]
          Length = 248

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 107/216 (49%), Gaps = 20/216 (9%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           IG+   N +L + AL+H+S S S Q    ES ERLE+LGD ILG +++  LF  +   +E
Sbjct: 28  IGHKPFNLALYQLALSHTSASKSLQDGFKESNERLEYLGDAILGAIVADYLFKKYPFKEE 87

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G L+     +V+ E+ +Q++R++ +   IR   + + +      S+  D +E+L+ A+YL
Sbjct: 88  GFLTEIRARIVNRESLNQLSRKMGIQDLIRYEGNPKSNFT--YKSMGGDALEALVGAVYL 145

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKF--------RRDAKTELQEWAHAKFGVTPEYKVTFR 180
           D G      FV      R +  G           ++ K+ + EWA  K     ++++   
Sbjct: 146 DKGFHYCRKFV-----VRKIVLGHLDLDDIIENNQNYKSIIIEWAQ-KNNRDLKFEIVRE 199

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            G  H  +F   V I     A+G   SK+ AEQ AA
Sbjct: 200 EGSKHQRQFIAQVIIDDEPVAKGSGFSKKKAEQAAA 235


>gi|315038614|ref|YP_004032182.1| ribonuclease III [Lactobacillus amylovorus GRL 1112]
 gi|312276747|gb|ADQ59387.1| ribonuclease III [Lactobacillus amylovorus GRL 1112]
          Length = 228

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/194 (34%), Positives = 95/194 (48%), Gaps = 11/194 (5%)

Query: 17  FANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           F N  LLE+A THSS S+ + ++    YE+LEFLGD +L L +S  L+ H+    EGEL+
Sbjct: 18  FNNEKLLEEAFTHSSYSNEHPDAGIRDYEKLEFLGDAVLELAVSNYLYRHYPKLNEGELT 77

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
              +++V  E  S+ A E      I + +   K       ++  DV E+   ALYLD G+
Sbjct: 78  RLRSNIVRTEGFSEFAIECGFQKEIHLGNGEEKAGARNRKTLLEDVFEAFNGALYLDQGM 137

Query: 133 EVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG-PDHDPRF 189
                F+        +  G+F   RD KT+LQE       V  EY V   S  P H   F
Sbjct: 138 PAVEHFL-HLTVYPLIDKGEFDDSRDYKTDLQELLQQNGPVNIEYSVISESQLPSH---F 193

Query: 190 TVVVEISGLAPAQG 203
            V ++I+  A  +G
Sbjct: 194 EVELKINDEAKTRG 207


>gi|169630337|ref|YP_001703986.1| ribonuclease III [Mycobacterium abscessus ATCC 19977]
 gi|169242304|emb|CAM63332.1| Ribonuclease III Rnc [Mycobacterium abscessus]
          Length = 258

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/210 (33%), Positives = 102/210 (48%), Gaps = 9/210 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH 62
           R+  L   IG    +  LL  ALTH S ++      + ERLEFLGD +LGL I+  L++ 
Sbjct: 8   RHDDLRAAIGVQLGDE-LLTLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITETLYHS 66

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVV 119
                EG+L+    S+V+ +  + VAR L    L + + +            +SI AD +
Sbjct: 67  HPDRSEGDLAKLRASIVNTQALAGVARGLTGDGLGAHLLLGKGEENTGGRDKSSILADGM 126

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177
           ES++ A+YL+ G+E A   V   + +    + K     D KT LQE    K    P Y V
Sbjct: 127 ESILGAVYLEHGLETARAVVLTLFGELLETAPKLGAGLDWKTSLQELTAEKGWGAPSYAV 186

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           T  +GPDHD  FT  V ++  A   G+  S
Sbjct: 187 T-STGPDHDKEFTATVMVNDTAHGVGVGRS 215


>gi|325957095|ref|YP_004292507.1| ribonuclease III [Lactobacillus acidophilus 30SC]
 gi|325333660|gb|ADZ07568.1| ribonuclease III [Lactobacillus acidophilus 30SC]
 gi|327183818|gb|AEA32265.1| ribonuclease III [Lactobacillus amylovorus GRL 1118]
          Length = 228

 Score = 85.9 bits (211), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/194 (34%), Positives = 95/194 (48%), Gaps = 11/194 (5%)

Query: 17  FANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           F N  LLE+A THSS S+ + ++    YE+LEFLGD +L L +S  L+ H+    EGEL+
Sbjct: 18  FNNEKLLEEAFTHSSYSNEHPDAGIRDYEKLEFLGDAVLELAVSNYLYRHYPKLNEGELT 77

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
              +++V  E  S+ A E      I + +   K       ++  DV E+   ALYLD G+
Sbjct: 78  RLRSNIVRTEGFSEFAIECGFQKEIHLGNGEEKAGARSRKTLLEDVFEAFNGALYLDQGM 137

Query: 133 EVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG-PDHDPRF 189
                F+        +  G+F   RD KT+LQE       V  EY V   S  P H   F
Sbjct: 138 PAVEHFL-HLTVYPLIDKGEFDDSRDYKTDLQELLQQNGPVNIEYSVISESQLPSH---F 193

Query: 190 TVVVEISGLAPAQG 203
            V ++I+  A  +G
Sbjct: 194 EVELKINDEAKTRG 207


>gi|188593372|emb|CAP07635.1| drosha protein [Oikopleura dioica]
          Length = 1096

 Score = 85.9 bits (211), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 110/227 (48%), Gaps = 11/227 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNH 62
           R + LE+ +G  F N  LL KALT  ++ ++   +   +RLEFLGD I   L +  LF H
Sbjct: 768 RCAELEELLGVKFKNIRLLAKALTLKNVKYNDITKGHNQRLEFLGDAICNFLAAEYLFKH 827

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L++   ++V A T + VA+++ L  F+     L  D   +   I AD++ES 
Sbjct: 828 FPLHHEGHLTLLRCTMVGAPTQALVAQQIGLDKFVISRQSLSHDKMGWKQKILADLMESF 887

Query: 123 IAALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWA---HAKFGVT--PEY 175
           I AL++D GI     F  V  Y + +     +   D K+ LQ+       + G    PEY
Sbjct: 888 IGALFIDRGIIAVDVFMKVAFYPRLKHFIMSQVWNDPKSCLQQCCLTLRPEEGTPDLPEY 947

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           + T  +      R+ V V   G    +G   S + AE+ AA + L++
Sbjct: 948 RTTTSNSSKM--RYRVEVFFRGERIGEGHGPSIQLAEKFAARKALEK 992



 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 60/97 (61%), Gaps = 8/97 (8%)

Query: 41  ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLAS-FIRV 99
           ER EFLGD +LG ++S  +F+ F +  EG LS+   +LV     + +A++L L   F+ +
Sbjct: 628 ERPEFLGDAVLGFVVSVSIFHLFPNLGEGALSMLRCALVCNVHLAALAQKLTLEDYFVYI 687

Query: 100 -SSDL--RKDVCSFMTSIQADVVESLIAALYLDGGIE 133
            S DL  R+D+ + +    A+  E+++ A+Y+DGG+E
Sbjct: 688 HSQDLAKREDLNNAL----ANCFEAVLGAIYMDGGLE 720


>gi|116074432|ref|ZP_01471694.1| putative ribonuclease III [Synechococcus sp. RS9916]
 gi|116069737|gb|EAU75489.1| putative ribonuclease III [Synechococcus sp. RS9916]
          Length = 247

 Score = 85.9 bits (211), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 105/205 (51%), Gaps = 7/205 (3%)

Query: 21  SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
           +L+++ALTH+S       ++ERLEFLGD +L L  S  +  H      GE S     LVS
Sbjct: 40  ALVDEALTHTSTGRHI--NHERLEFLGDAVLRLAASEYIEQHHPQLPVGERSALRAQLVS 97

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIEVAGTFV 139
               + +   + + +   + +  R D  +  T ++A+  E+LI ALY   G IE   +++
Sbjct: 98  DRWLAALGDSIGIEAVQTIGAKARGDDAARAT-LRAEATEALIGALYQGWGSIEPVHSWL 156

Query: 140 DKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEIS 196
             +W++   A+ +   + +AK+ LQEW+ A+    P Y    +S    DP RF   VE+ 
Sbjct: 157 TPHWQRTSAAVLADPHKGNAKSALQEWSQARKLGLPTYCSEEQSQRHGDPKRFRCQVELQ 216

Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLK 221
           G   A+G   S+R AEQ AA   L+
Sbjct: 217 GKTLAEGWGGSRRDAEQRAAQAALQ 241


>gi|53711509|ref|YP_097501.1| ribonuclease III [Bacteroides fragilis YCH46]
 gi|81383900|sp|Q64ZV9|RNC_BACFR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|52214374|dbj|BAD46967.1| ribonuclease III [Bacteroides fragilis YCH46]
          Length = 290

 Score = 85.9 bits (211), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 115/225 (51%), Gaps = 13/225 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           YS   + +G+   N  L E+AL H S +   ++    + ERLEFLGD IL  ++  +++ 
Sbjct: 20  YSCFYRILGFYPRNIRLYEQALLHKSTAVRSEKGRPLNNERLEFLGDAILDAIVGDIVYQ 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF+  +EG L+   + +V  ET +++A E+ L   I+ S+       S  + +  +  E+
Sbjct: 80  HFEGKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAFEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVT 178
            I A+YLD G E    F+++   +  +   K  R   + K++L EW+  K  +   +++ 
Sbjct: 136 FIGAIYLDRGYECCKQFMERRIIEPYIDLDKLSRKEVNFKSKLIEWSQ-KNKMEVSFELI 194

Query: 179 FRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            +S   +++P F   V I G+    G   SK+ ++Q AA   LK+
Sbjct: 195 EQSLDKENNPVFQTEVRIEGILGGSGTGYSKKESQQNAAQMTLKK 239


>gi|300868781|ref|ZP_07113390.1| ribonuclease III [Oscillatoria sp. PCC 6506]
 gi|300333217|emb|CBN58582.1| ribonuclease III [Oscillatoria sp. PCC 6506]
          Length = 237

 Score = 85.9 bits (211), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/204 (33%), Positives = 107/204 (52%), Gaps = 15/204 (7%)

Query: 5   RYSTLEK---RIGYAFANR---SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58
           R   LEK   ++G    NR    LL+ ALTH + S   Q +YE+LEF+GD ++ L  S L
Sbjct: 8   RQKELEKLVEKLGLPDRNRVNWQLLDLALTHPTAST--QANYEQLEFIGDAVVRLAASEL 65

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF  +  +  GE +   + LVS  T +Q+A       ++ VSS    D     + + AD 
Sbjct: 66  LFETYPGSSVGEFAAIRSLLVSDRTLAQIADSYGFGRYLIVSSSAACDKAGEESRL-ADA 124

Query: 119 VESLIAALYLD-GGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEY 175
            E+++AALYL    +++   ++D +++ RA +  S   R++ K  LQEW   ++ + PEY
Sbjct: 125 FEAVLAALYLSTNTLQLIRPWLDPHFQPRAAQILSDPARQNYKAALQEWTQGQYKILPEY 184

Query: 176 KVTFRSGPDH--DPRFTVVVEISG 197
            V   +G  H  + RFT  V + G
Sbjct: 185 NVK-ETGRVHGEEERFTAEVWLRG 207


>gi|265764902|ref|ZP_06093177.1| ribonuclease III [Bacteroides sp. 2_1_16]
 gi|263254286|gb|EEZ25720.1| ribonuclease III [Bacteroides sp. 2_1_16]
          Length = 290

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 115/225 (51%), Gaps = 13/225 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           YS   + +G+   N  L E+AL H S +   ++    + ERLEFLGD IL  ++  +++ 
Sbjct: 20  YSCFYRILGFYPRNIRLYEQALLHKSTAVRSEKGRPLNNERLEFLGDAILDAIVGDIVYQ 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF+  +EG L+   + +V  ET +++A E+ L   I+ S+       S  + +  +  E+
Sbjct: 80  HFEGKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAFEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVT 178
            I A+YLD G E    F+++   +  +   K  R   + K++L EW+  K  +   +++ 
Sbjct: 136 FIGAIYLDRGYECCKQFMERRIIEPYIDLDKLSRKEVNFKSKLIEWSQ-KNKMEVSFELI 194

Query: 179 FRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            +S   +++P F   V I G+    G   SK+ ++Q AA   LK+
Sbjct: 195 EQSLDKENNPVFQTEVRIEGILGGSGTGYSKKESQQNAAQMTLKK 239


>gi|145296037|ref|YP_001138858.1| ribonuclease III [Corynebacterium glutamicum R]
 gi|140845957|dbj|BAF54956.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 247

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/207 (32%), Positives = 103/207 (49%), Gaps = 5/207 (2%)

Query: 20  RSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
           R LL  ALTH S ++      + ERLEFLGD +LGL ++  L+  + S+ E ++S    S
Sbjct: 36  RDLLVLALTHRSFANENGMLPNNERLEFLGDAVLGLSVANKLYEQYPSSPESDVSKMRAS 95

Query: 78  LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137
           +VS    + +ARE+DL + I +             SI AD  E+L+ A++   G E A  
Sbjct: 96  IVSRYGLADIAREIDLGNHILLGKGELLTEGRSKDSILADTTEALLGAIFRQHGFETARD 155

Query: 138 FVDKY--WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
            + +   +K     +    +D KT LQE    +     EY  T   GPDHD  FT +V +
Sbjct: 156 VILRLFAYKIDNASARGIHQDWKTTLQEELAQRKRPMAEYSAT-SVGPDHDLVFTAIVTL 214

Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            G    +G   +K+ AEQ AA +  ++
Sbjct: 215 EGEEMGRGEGPNKKLAEQEAARQAFRK 241


>gi|60679772|ref|YP_209916.1| putative ribonuclease III [Bacteroides fragilis NCTC 9343]
 gi|253564432|ref|ZP_04841889.1| ribonuclease 3 [Bacteroides sp. 3_2_5]
 gi|81317155|sp|Q5LIS2|RNC_BACFN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|60491206|emb|CAH05954.1| putative ribonuclease III [Bacteroides fragilis NCTC 9343]
 gi|251948208|gb|EES88490.1| ribonuclease 3 [Bacteroides sp. 3_2_5]
 gi|301161237|emb|CBW20775.1| putative ribonuclease III [Bacteroides fragilis 638R]
          Length = 290

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 115/225 (51%), Gaps = 13/225 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           YS   + +G+   N  L E+AL H S +   ++    + ERLEFLGD IL  ++  +++ 
Sbjct: 20  YSCFYRILGFYPRNIRLYEQALLHKSTAVRSEKGRPLNNERLEFLGDAILDAIVGDIVYQ 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF+  +EG L+   + +V  ET +++A E+ L   I+ S+       S  + +  +  E+
Sbjct: 80  HFEGKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAFEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVT 178
            I A+YLD G E    F+++   +  +   K  R   + K++L EW+  K  +   +++ 
Sbjct: 136 FIGAIYLDRGYECCKQFMERRIIEPYIDLDKLSRKEVNFKSKLIEWSQ-KNKMEVSFELI 194

Query: 179 FRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            +S   +++P F   V I G+    G   SK+ ++Q AA   LK+
Sbjct: 195 EQSLDKENNPVFQTEVRIEGILGGSGTGYSKKESQQNAAQMTLKK 239


>gi|89895402|ref|YP_518889.1| hypothetical protein DSY2656 [Desulfitobacterium hafniense Y51]
 gi|89334850|dbj|BAE84445.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 262

 Score = 85.5 bits (210), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 110/222 (49%), Gaps = 16/222 (7%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           L KR+    +   L   ALTH S       S  E+ +RLEFLGD IL  +++  L+  + 
Sbjct: 38  LAKRLELDESPNRLFTTALTHPSYLFENPQSGLENNQRLEFLGDAILDFVVAEYLYLSYP 97

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGEL+    ++V+  T ++ A+++ L   + +    +        SI AD  E+++ 
Sbjct: 98  ERPEGELTKMRAAVVNESTLARTAKKIRLGEELLLGKGEQVSGGRERPSILADAWEAIVG 157

Query: 125 ALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR-- 180
           A+YL  G + A   V    K+    +  G +  D KT LQE A  +     E +VT+R  
Sbjct: 158 AVYLQYGFQEARRVVLTLLKEEIAEVAQGNYG-DYKTMLQEKAQRE-----ETEVTYRIL 211

Query: 181 --SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
              GPDH+ RFT  V + G    +G+  +K+ AEQ AA +VL
Sbjct: 212 AEEGPDHNKRFTAGVFLQGNLRGKGIGRTKKEAEQRAAQQVL 253


>gi|119962673|ref|YP_948196.1| ribonuclease III (RNase III) [Arthrobacter aurescens TC1]
 gi|119949532|gb|ABM08443.1| putative ribonuclease III (RNase III) [Arthrobacter aurescens TC1]
          Length = 236

 Score = 85.5 bits (210), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 68/205 (33%), Positives = 97/205 (47%), Gaps = 6/205 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           L KR+G +    +L   ALTH S ++      + ERLEFLGD ILG  ++  L+    S 
Sbjct: 7   LLKRLGVSIDTETL-RLALTHRSYAYENGGIPTNERLEFLGDSILGFSVTDSLYRENPSL 65

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGEL+ R +++VS    + + RE+ +  FI +    +        SI AD +E+LI A 
Sbjct: 66  PEGELAKRRSAVVSTRALAGIGREIGVGEFIYLGQGEKLTDGKNKASILADTMEALIGAT 125

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YL   IE A   V +        +G      D KT +QE   ++      Y V   SGPD
Sbjct: 126 YLSNDIETARQLVMRLVGPLLKDAGALGAGTDWKTSIQELTASRQLGAIHYAVEG-SGPD 184

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKR 209
           H   F  V+ I G    +G   SK+
Sbjct: 185 HARTFEAVLNIGGTPYGRGSGHSKK 209


>gi|209527991|ref|ZP_03276474.1| Ribonuclease III [Arthrospira maxima CS-328]
 gi|209491588|gb|EDZ91960.1| Ribonuclease III [Arthrospira maxima CS-328]
          Length = 246

 Score = 85.5 bits (210), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 108/202 (53%), Gaps = 12/202 (5%)

Query: 5   RYSTLEK---RIGYAFANR---SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58
           R + LEK   R+G +   +    LL+ ALTH S+S   Q++YE+LEF+GD ++ L+ S L
Sbjct: 12  RQNQLEKLIERLGLSTQQKIAWQLLDLALTHPSVST--QDNYEQLEFVGDSVVRLVASEL 69

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L   + +A  GE +   + LVS    ++++    L  ++ V     +D     + + AD 
Sbjct: 70  LLETYPNAPVGEFAAVRSILVSDRILAEISNSYGLGRYLLVGGSATRDRLGEESRL-ADC 128

Query: 119 VESLIAALYLD-GGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEY 175
            E+++AALYL    +E+   ++D++  +RA  + +   R++ K  LQEW  + + + P+Y
Sbjct: 129 FEAVLAALYLSTNTLELIRPWLDQHLLERATDIFNDPARQNYKAALQEWTQSCYKILPQY 188

Query: 176 KVTFRSGPDHDPRFTVVVEISG 197
           KV        + RFT  V + G
Sbjct: 189 KVNETGYAGDEARFTASVWLRG 210


>gi|227875300|ref|ZP_03993442.1| ribonuclease III [Mobiluncus mulieris ATCC 35243]
 gi|227844205|gb|EEJ54372.1| ribonuclease III [Mobiluncus mulieris ATCC 35243]
          Length = 261

 Score = 85.5 bits (210), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 101/200 (50%), Gaps = 10/200 (5%)

Query: 22  LLEKALTHSSISHSYQES-----YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           LL  A+TH S SH + ++      ERLEFLGD +L ++++  L+ +F    EG L+    
Sbjct: 30  LLVLAMTHRSFSHEHGKTGSRGTNERLEFLGDAVLQIIVTEYLYRNFPDEPEGTLAQMRA 89

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           + VS    ++VAR++ L  ++R+     +       SI +D +E+LI A +L  G+ V  
Sbjct: 90  ATVSQTPLAEVARKIHLGEYLRLGVGEDRQGGRDKDSILSDTLEALIGATFLSCGLSVTR 149

Query: 137 TFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
             V+++ + R L++   R    D KT LQE   A       Y+V   +GPDH   F+   
Sbjct: 150 VVVERHLR-RFLRNAPRRAVTLDWKTTLQELLSAADLGEVTYEVVA-TGPDHQKHFSAQA 207

Query: 194 EISGLAPAQGMDCSKRAAEQ 213
            + G    +G   SK+ AE 
Sbjct: 208 LVEGENWGEGQGSSKKIAEH 227


>gi|189465040|ref|ZP_03013825.1| hypothetical protein BACINT_01384 [Bacteroides intestinalis DSM
           17393]
 gi|189437314|gb|EDV06299.1| hypothetical protein BACINT_01384 [Bacteroides intestinalis DSM
           17393]
          Length = 291

 Score = 85.5 bits (210), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 114/225 (50%), Gaps = 13/225 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y    K +G+   N  L ++AL H S S   ++    + ERLEFLGD IL  ++  +++ 
Sbjct: 20  YLCFYKILGFYPRNIQLYQQALLHKSTSIRSEKGRPLNNERLEFLGDAILDAIVGDIVYK 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF+  +EG L+   + +V  ET +++A E+ L   ++ S+       S  + +  +  E+
Sbjct: 80  HFEGRREGFLTNTRSKIVQRETLNKLAVEIGLDKLVKYSA----RSSSHNSYMYGNAFEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAH-AKFGVTPEYKV 177
            I A+YLD G +    F+++   +  +   K  R   + K++L EW+  +K  V+ E   
Sbjct: 136 FIGAIYLDQGYKRCKRFMEEKIFKNYIDLDKMSRKEVNFKSKLIEWSQKSKVEVSFELIE 195

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            F    D++P F   + I G+   +G   SK+ ++Q AA   LK+
Sbjct: 196 QFLD-EDYNPMFHTEIRIEGIPAGKGTGYSKKESQQNAAQAALKK 239


>gi|118470776|ref|YP_886758.1| ribonuclease III [Mycobacterium smegmatis str. MC2 155]
 gi|118172063|gb|ABK72959.1| ribonuclease III [Mycobacterium smegmatis str. MC2 155]
          Length = 230

 Score = 85.1 bits (209), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 111/226 (49%), Gaps = 15/226 (6%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
           ++ L + +G A     LL  ALTH S S+      + ERLEFLGD +LGL I+  L++  
Sbjct: 5   HAALLEALGVALPAE-LLTIALTHRSYSYENGGLPTNERLEFLGDAVLGLTITEELYHRH 63

Query: 64  DSAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVE 120
               EG+L+    S+V+ +  + V R L    L + + +         +  +SI AD VE
Sbjct: 64  PDRAEGDLAKLRASIVNTQALADVGRGLTDEGLGAHLFLGKGEENSGGADKSSILADGVE 123

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ-----RALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
           SL+ A+YL+ G+ V    + + + +       L +G    D K+ LQE   A+    P Y
Sbjct: 124 SLLGAIYLEHGLTVVREVILRLFGELLDTAPTLGAG---LDWKSSLQELTAARGLGAPAY 180

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            VT  +GPDHD  F+  V I       G+  +K+ AE  AAA   K
Sbjct: 181 VVT-STGPDHDKEFSATVVIGEAEYGHGVGRTKKEAELKAAASAYK 225


>gi|269978187|ref|ZP_06185137.1| ribonuclease III [Mobiluncus mulieris 28-1]
 gi|306818562|ref|ZP_07452285.1| ribonuclease III [Mobiluncus mulieris ATCC 35239]
 gi|307700841|ref|ZP_07637866.1| ribonuclease III [Mobiluncus mulieris FB024-16]
 gi|269933696|gb|EEZ90280.1| ribonuclease III [Mobiluncus mulieris 28-1]
 gi|304648735|gb|EFM46037.1| ribonuclease III [Mobiluncus mulieris ATCC 35239]
 gi|307613836|gb|EFN93080.1| ribonuclease III [Mobiluncus mulieris FB024-16]
          Length = 269

 Score = 85.1 bits (209), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 101/200 (50%), Gaps = 10/200 (5%)

Query: 22  LLEKALTHSSISHSYQES-----YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           LL  A+TH S SH + ++      ERLEFLGD +L ++++  L+ +F    EG L+    
Sbjct: 38  LLVLAMTHRSFSHEHGKTGSRGTNERLEFLGDAVLQIIVTEYLYRNFPDEPEGTLAQMRA 97

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           + VS    ++VAR++ L  ++R+     +       SI +D +E+LI A +L  G+ V  
Sbjct: 98  ATVSQTPLAEVARKIHLGEYLRLGVGEDRQGGRDKDSILSDTLEALIGATFLSCGLSVTR 157

Query: 137 TFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
             V+++ + R L++   R    D KT LQE   A       Y+V   +GPDH   F+   
Sbjct: 158 VVVERHLR-RFLRNAPRRAVTLDWKTTLQELLSAADLGEVTYEVVA-TGPDHQKHFSAQA 215

Query: 194 EISGLAPAQGMDCSKRAAEQ 213
            + G    +G   SK+ AE 
Sbjct: 216 LVEGENWGEGQGSSKKIAEH 235


>gi|330684635|gb|EGG96340.1| ribonuclease III [Staphylococcus epidermidis VCU121]
          Length = 235

 Score = 85.1 bits (209), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 11/212 (5%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +G+ + N  L ++A +HSS  + +     +  ERLEFLGD +L L +S  LF+      E
Sbjct: 24  LGFEYNNIELYQQAFSHSSFINDFNMDRLDHNERLEFLGDAVLELTVSRYLFDKHPDLPE 83

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G L+    ++V   +    A ++ L   I +     K       S+ +D  E+ + ALYL
Sbjct: 84  GNLTKMRATIVCEPSLVIFANKIKLNELILLGKGEEKTGGRTRPSLISDAFEAFVGALYL 143

Query: 129 DGGIEVAGTFVDK----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           D G+++   F +K    Y +   L       D KT+ QE+ H +      Y++    GP 
Sbjct: 144 DQGLDIVWDFAEKIIFPYVEDDELDG---VVDFKTQFQEFVHRQNKGDVTYRLIKEEGPA 200

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           H   FT  V +   A A+G   +K+ +EQ AA
Sbjct: 201 HHRLFTSEVILEKQAVAEGQGKTKKESEQKAA 232


>gi|255326576|ref|ZP_05367653.1| ribonuclease III [Rothia mucilaginosa ATCC 25296]
 gi|255296316|gb|EET75656.1| ribonuclease III [Rothia mucilaginosa ATCC 25296]
          Length = 229

 Score = 85.1 bits (209), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 108/220 (49%), Gaps = 12/220 (5%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           L KR+G      + L  +LTH S +  +   E  ERLEFLGD +L L I+  ++  +   
Sbjct: 12  LRKRLGVDIDAETFL-LSLTHRSYAFENPGVEHNERLEFLGDSVLSLAIAEEVYRRYPDL 70

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGEL    + +VS    ++VAR+LDL  +I +         +   SI AD +E++    
Sbjct: 71  PEGELVKLHHVVVSTVALAKVARDLDLGRYILLGKGEIHTGGADKDSILADTMEAIFGLT 130

Query: 127 YLDGGIEVAGTFVDKYW-----KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           YL+ G E A   V +        ++ L SG   RD KTEL   A A+      Y+VT   
Sbjct: 131 YLECGREAARDLVLRLIAPLLDDEKVLNSG---RDWKTELLNLATARGWGDVRYEVTG-E 186

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           GPDH   +T V  ++      G+  SK+ AE++AA +  +
Sbjct: 187 GPDHARVYTAVAIVANQQTGTGVGPSKKEAERLAAEQAYR 226


>gi|283457874|ref|YP_003362474.1| dsRNA-specific ribonuclease [Rothia mucilaginosa DY-18]
 gi|283133889|dbj|BAI64654.1| dsRNA-specific ribonuclease [Rothia mucilaginosa DY-18]
          Length = 229

 Score = 85.1 bits (209), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 108/220 (49%), Gaps = 12/220 (5%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           L KR+G      + L  +LTH S +  +   E  ERLEFLGD +L L I+  ++  +   
Sbjct: 12  LRKRLGVDIDAETFL-LSLTHRSYAFENPGVEHNERLEFLGDSVLSLAIAEEVYRRYPDL 70

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGEL    + +VS    ++VAR+LDL  +I +         +   SI AD +E++    
Sbjct: 71  PEGELVKLHHVVVSTVALAKVARDLDLGRYILLGKGEIHTGGADKDSILADTMEAIFGLT 130

Query: 127 YLDGGIEVAGTFVDKYW-----KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           YL+ G E A   V +        ++ L SG   RD KTEL   A A+      Y+VT   
Sbjct: 131 YLECGREAARDLVLRLIAPLLDDEKVLNSG---RDWKTELLNLATARGWGDVRYEVTG-E 186

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           GPDH   +T V  ++      G+  SK+ AE++AA +  +
Sbjct: 187 GPDHARVYTAVAIVANQQAGTGVGPSKKEAERLAAEQAYR 226


>gi|58337573|ref|YP_194158.1| ribonuclease III [Lactobacillus acidophilus NCFM]
 gi|227904215|ref|ZP_04022020.1| dsRNA-specific ribonuclease RNaseIII [Lactobacillus acidophilus
           ATCC 4796]
 gi|75432899|sp|Q5FJJ7|RNC_LACAC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|58254890|gb|AAV43127.1| dsRNA-specific ribonuclease RNaseIII [Lactobacillus acidophilus
           NCFM]
 gi|227868234|gb|EEJ75655.1| dsRNA-specific ribonuclease RNaseIII [Lactobacillus acidophilus
           ATCC 4796]
          Length = 228

 Score = 85.1 bits (209), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 66/204 (32%), Positives = 96/204 (47%), Gaps = 11/204 (5%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNH 62
           + L+      F N  LLE+A THSS S+ + +     YE+LEFLGD +L L +S  L+ H
Sbjct: 8   NKLKNEYNIEFNNEKLLEEAFTHSSYSNEHPDDGIRDYEKLEFLGDAVLELAVSNYLYRH 67

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +    EGEL+   +++V  E  S+ A E      I + +   K       ++  DV E+ 
Sbjct: 68  YPKLNEGELTRLRSNIVRTEGFSEFAIECGFQKEIHLGNGEEKAGARNRKTLLEDVFEAF 127

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFR 180
             AL+LD G+     F+        +  G+F   RD KT+LQE       V  EY V   
Sbjct: 128 NGALFLDQGMPAVERFL-HLTVYPLIAKGEFDDSRDYKTDLQELLQQNGPVNIEYSVISE 186

Query: 181 SG-PDHDPRFTVVVEISGLAPAQG 203
           S  P H   F V ++I+     QG
Sbjct: 187 SQLPSH---FVVELKINDQVQTQG 207


>gi|219669830|ref|YP_002460265.1| ribonuclease III [Desulfitobacterium hafniense DCB-2]
 gi|219540090|gb|ACL21829.1| Ribonuclease III [Desulfitobacterium hafniense DCB-2]
          Length = 262

 Score = 85.1 bits (209), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 109/222 (49%), Gaps = 16/222 (7%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           L KR+        L   ALTH S       S  E+ +RLEFLGD IL  +++  L+  + 
Sbjct: 38  LAKRLELDDPPNRLFTTALTHPSYLFENPQSGLENNQRLEFLGDAILDFVVAEYLYLSYP 97

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGEL+    ++V+  T ++ A+++ L   + +    +        SI AD  E+++ 
Sbjct: 98  ERPEGELTKMRAAVVNESTLARTAKKIRLGEELLLGKGEQVSGGRERPSILADAWEAIVG 157

Query: 125 ALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR-- 180
           A+YL  G + A   V    K+    +  G +  D KT LQE A  +     E +VT+R  
Sbjct: 158 AVYLQYGFQEARRVVLTLLKEEIAEVAQGNYG-DYKTMLQEKAQRE-----ETEVTYRIL 211

Query: 181 --SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
              GPDH+ RFT  V + G    +G+  +K+ AEQ AA +VL
Sbjct: 212 AEEGPDHNKRFTAGVFLQGNLRGKGIGRTKKEAEQRAAQQVL 253


>gi|255010202|ref|ZP_05282328.1| ribonuclease III [Bacteroides fragilis 3_1_12]
          Length = 290

 Score = 85.1 bits (209), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 109/218 (50%), Gaps = 13/218 (5%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +G+   N  L E+AL H S +   ++    + ERLEFLGD IL  ++  +++ HF+  +E
Sbjct: 27  LGFYPRNIRLYEQALLHKSTAVRSEKGRPLNNERLEFLGDAILDAIVGDIVYQHFEGKRE 86

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G L+   + +V  ET +++A E+ L   I+ S+       S  + +  +  E+ I A+YL
Sbjct: 87  GFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAFEAFIGAIYL 142

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKVTFRSGPD 184
           D G E    F+ K   +  +   K  R   + K++L EW+   K  V+ E    F    +
Sbjct: 143 DRGYECCKQFMQKKIIEPYIDLDKLSRKEVNFKSKLIEWSQKNKMEVSFELIEQFLD-KE 201

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           ++P F   V I G+    G   SK+ ++Q AA   LK+
Sbjct: 202 NNPVFQTEVRIEGILGGSGTGYSKKESQQNAAQMALKK 239


>gi|289643138|ref|ZP_06475267.1| ribonuclease III [Frankia symbiont of Datisca glomerata]
 gi|289507030|gb|EFD28000.1| ribonuclease III [Frankia symbiont of Datisca glomerata]
          Length = 272

 Score = 85.1 bits (209), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 67/197 (34%), Positives = 101/197 (51%), Gaps = 12/197 (6%)

Query: 22  LLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
           LLE ALTH S  ++Y++    + ERLEFLGD +L L+++  LFN      EG+L+ +  S
Sbjct: 26  LLELALTHRS--YAYEQGGLPTNERLEFLGDSVLSLVVTDALFNRHPDLPEGQLAKQRAS 83

Query: 78  LVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
           +V+    ++VAR L    +  ++ +             SI AD +E+LI A+YL  G+  
Sbjct: 84  VVNMRALAEVARTLGEKGIGPYLLLGRGEETTGGRDKASILADTLEALIGAVYLSSGLGS 143

Query: 135 AGTFVDKYWKQRA-LKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
           A  FV + +     + +G+    D KT LQE   +     PEY+V    GPDH  RFT  
Sbjct: 144 ASEFVHRLFDPLLDVAAGRGAGLDWKTSLQERTASLLLGPPEYEVD-EFGPDHAKRFTAR 202

Query: 193 VEISGLAPAQGMDCSKR 209
             ++G     G   SK+
Sbjct: 203 AVVAGRVLGHGDGGSKK 219


>gi|87123193|ref|ZP_01079044.1| putative ribonuclease III [Synechococcus sp. RS9917]
 gi|86168913|gb|EAQ70169.1| putative ribonuclease III [Synechococcus sp. RS9917]
          Length = 231

 Score = 85.1 bits (209), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 63/201 (31%), Positives = 103/201 (51%), Gaps = 7/201 (3%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           L +ALTH+S        +E+LEFLGD +L L  +  + +       GE S     LVS +
Sbjct: 24  LNEALTHTS--SGLHPHHEQLEFLGDAVLRLAATEFIASTQPQLPMGERSALRAQLVSDQ 81

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
             +Q+  ++ +A + ++ +    DV    T ++A++ E+LI A+Y  GG++    ++  Y
Sbjct: 82  WLAQLGEQIGIARWWQIGAMASGDVAGHAT-LRAELSEALIGAIYAIGGLQAVQAWLTPY 140

Query: 143 WKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISGLA 199
           W+    A+ +   R ++K+ LQEW+  +    P Y     S    DP RF   V +  L 
Sbjct: 141 WQPTSAAVLADPHRGNSKSALQEWSQGQALGLPAYDTREASRRHGDPRRFHCRVSLPDLL 200

Query: 200 PAQGMDCSKRAAEQVAAAEVL 220
            A+G   S+R AEQ AAA +L
Sbjct: 201 -AEGWGGSRREAEQHAAAALL 220


>gi|86742282|ref|YP_482682.1| ribonuclease III [Frankia sp. CcI3]
 gi|86569144|gb|ABD12953.1| RNAse III [Frankia sp. CcI3]
          Length = 270

 Score = 85.1 bits (209), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 64/189 (33%), Positives = 96/189 (50%), Gaps = 16/189 (8%)

Query: 19  NRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
           +  LL++ALTH S  ++Y++    + ERLEFLGD +LGL+++  LF       EG+L+ +
Sbjct: 23  DPELLDRALTHRS--YAYEKGGLPTNERLEFLGDAVLGLVVTAALFIRHPDLPEGQLAKQ 80

Query: 75  FNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131
             S+V+    + VAR +    L  ++ +             SI AD +E++I A+YL  G
Sbjct: 81  RASVVNMRALADVARGIGPTGLGPYLLLGRGEETTGGRDKASILADTLEAIIGAVYLSSG 140

Query: 132 IEVAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           ++VA  FV    D    + A +      D KT LQE         PEY V   +GPDH  
Sbjct: 141 LDVASGFVHRLFDPLLDEAAGRGAGL--DWKTSLQEQTAVLALGPPEYIVE-EAGPDHAK 197

Query: 188 RFTVVVEIS 196
           RFT    I+
Sbjct: 198 RFTAYARIA 206


>gi|313147996|ref|ZP_07810189.1| ribonuclease III [Bacteroides fragilis 3_1_12]
 gi|313136763|gb|EFR54123.1| ribonuclease III [Bacteroides fragilis 3_1_12]
          Length = 294

 Score = 85.1 bits (209), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 109/218 (50%), Gaps = 13/218 (5%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +G+   N  L E+AL H S +   ++    + ERLEFLGD IL  ++  +++ HF+  +E
Sbjct: 31  LGFYPRNIRLYEQALLHKSTAVRSEKGRPLNNERLEFLGDAILDAIVGDIVYQHFEGKRE 90

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G L+   + +V  ET +++A E+ L   I+ S+       S  + +  +  E+ I A+YL
Sbjct: 91  GFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAFEAFIGAIYL 146

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKVTFRSGPD 184
           D G E    F+ K   +  +   K  R   + K++L EW+   K  V+ E    F    +
Sbjct: 147 DRGYECCKQFMQKKIIEPYIDLDKLSRKEVNFKSKLIEWSQKNKMEVSFELIEQFLD-KE 205

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           ++P F   V I G+    G   SK+ ++Q AA   LK+
Sbjct: 206 NNPVFQTEVRIEGILGGSGTGYSKKESQQNAAQMALKK 243


>gi|161507714|ref|YP_001577671.1| ribonuclease III [Lactobacillus helveticus DPC 4571]
 gi|260101401|ref|ZP_05751638.1| ribonuclease III [Lactobacillus helveticus DSM 20075]
 gi|160348703|gb|ABX27377.1| Double stranded RNA-specific ribonuclease RNase [Lactobacillus
           helveticus DPC 4571]
 gi|260084741|gb|EEW68861.1| ribonuclease III [Lactobacillus helveticus DSM 20075]
 gi|323466305|gb|ADX69992.1| Double stranded RNA-specific ribonuclease RNase [Lactobacillus
           helveticus H10]
          Length = 228

 Score = 85.1 bits (209), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 65/194 (33%), Positives = 93/194 (47%), Gaps = 11/194 (5%)

Query: 17  FANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           F N  LLE+A THSS S+ +       YE+LEFLGD +L L +S  L+ H+    EGEL+
Sbjct: 18  FNNEKLLEEAFTHSSYSNEHPNDGIRDYEKLEFLGDAVLELAVSDYLYRHYPKLNEGELT 77

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
              +++V  E  S+ A E    + I + +   K       ++  DV E+   AL+LD G+
Sbjct: 78  RLRSNIVRTEGFSEFAIECGFQNEIHLGNGEEKAGARKRKTLLEDVFEAFNGALFLDQGM 137

Query: 133 EVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG-PDHDPRF 189
                F+        +  G+F   RD KT+LQE       V  EY V   S  P   P F
Sbjct: 138 PAVQHFL-HLTVYPLIDKGEFDDSRDYKTDLQELLQQNGPVNIEYSVISESQLP---PHF 193

Query: 190 TVVVEISGLAPAQG 203
            V ++I+     QG
Sbjct: 194 VVELKINDQVQTQG 207


>gi|116490531|ref|YP_810075.1| dsRNA-specific ribonuclease [Oenococcus oeni PSU-1]
 gi|290889932|ref|ZP_06553019.1| hypothetical protein AWRIB429_0409 [Oenococcus oeni AWRIB429]
 gi|122277282|sp|Q04GL2|RNC_OENOB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|116091256|gb|ABJ56410.1| RNAse III [Oenococcus oeni PSU-1]
 gi|290480542|gb|EFD89179.1| hypothetical protein AWRIB429_0409 [Oenococcus oeni AWRIB429]
          Length = 231

 Score = 85.1 bits (209), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 106/215 (49%), Gaps = 8/215 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           +++  G  FAN+ LL +A T  +  + + E     Y+RLEFLGD ++ L+++  LF  + 
Sbjct: 8   IKEDFGIEFANQDLLLEAFTQGNYLNEHPEEKGRDYQRLEFLGDSVMQLIVADYLFTRYP 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           + +EG+L+    ++V +++ S  AR      +IR+             S+  D+ E+ I 
Sbjct: 68  AWEEGQLTEMRIAMVQSKSFSHFARLAGFNRYIRLGKGEELSGARNRDSLLEDIWEAFIG 127

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182
           ALY D G +   TF++K +   A+  G F    D K++LQE       V  EYKV     
Sbjct: 128 ALYKDQGAKAVFTFLNKAFFP-AIDEGFFEEFIDYKSKLQELLQKAGSVDIEYKVENEDL 186

Query: 183 PD-HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            D   P F V V ++  A   G   S + AE+ AA
Sbjct: 187 SDPQKPHFEVTVFVNDKAIGSGSGRSIKIAEKRAA 221


>gi|288560534|ref|YP_003424020.1| ribonuclease III Rnc [Methanobrevibacter ruminantium M1]
 gi|288543244|gb|ADC47128.1| ribonuclease III Rnc [Methanobrevibacter ruminantium M1]
          Length = 232

 Score = 84.7 bits (208), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 96/206 (46%), Gaps = 6/206 (2%)

Query: 19  NRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
           +  L E A THSS  S  +   YERLEFLGD +L +L S  L N      EG+L+    +
Sbjct: 13  DMELYETAFTHSSYASKHHLNDYERLEFLGDSVLNMLTSEFLQNMHPDFGEGKLTKLRAN 72

Query: 78  LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137
            V        + E  L   ++++ +      + + SI ADV ES + A+YLD GI     
Sbjct: 73  YVCQNALIVYSHEFGLDKCVKLNLEDNALTDNEVISITADVFESFLGAIYLDQGISKCKE 132

Query: 138 FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE--YKVTFRSGPDHDPRFTVVVEI 195
           F+             F  D K+ ++E+  A   +  E  Y++    G  HD  F + + I
Sbjct: 133 FLTITVFPYIENEQIFFHDYKSTIKEYGDA---IDKEITYELIEEHGAPHDKTFVMKILI 189

Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLK 221
            G+    G+  SK+ AEQVAA   +K
Sbjct: 190 DGVDFGHGVGKSKKEAEQVAACNAIK 215


>gi|19553272|ref|NP_601274.1| ribonuclease III [Corynebacterium glutamicum ATCC 13032]
 gi|62390909|ref|YP_226311.1| ribonuclease III [Corynebacterium glutamicum ATCC 13032]
 gi|28201879|sp|Q8NNV6|RNC_CORGL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|21324844|dbj|BAB99467.1| dsRNA-specific ribonuclease [Corynebacterium glutamicum ATCC 13032]
 gi|41326248|emb|CAF20410.1| RIBONUCLEASE III [Corynebacterium glutamicum ATCC 13032]
          Length = 247

 Score = 84.7 bits (208), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 68/207 (32%), Positives = 102/207 (49%), Gaps = 5/207 (2%)

Query: 20  RSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
           R LL  ALTH S ++      + ERLEFLGD +LGL ++  L+  + S+ E ++S    S
Sbjct: 36  RDLLVLALTHRSFANENGMLPNNERLEFLGDAVLGLSVANKLYEQYPSSPESDVSKMRAS 95

Query: 78  LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137
           +VS    + +ARE+DL + I +             SI AD  E+L  A++   G E A  
Sbjct: 96  IVSRYGLADIAREIDLGNHILLGKGELLTEGRSKDSILADTTEALFGAIFRQHGFETARD 155

Query: 138 FVDKY--WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
            + +   +K     +    +D KT LQE    +     EY  T   GPDHD  FT +V +
Sbjct: 156 VILRLFAYKIDNASARGIHQDWKTTLQEELAQRKRPMAEYSAT-SVGPDHDLVFTAIVTL 214

Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            G    +G   +K+ AEQ AA +  ++
Sbjct: 215 EGEEMGRGEGPNKKLAEQEAAHQAFRK 241


>gi|299147039|ref|ZP_07040106.1| ribonuclease 3 [Bacteroides sp. 3_1_23]
 gi|298514924|gb|EFI38806.1| ribonuclease 3 [Bacteroides sp. 3_1_23]
          Length = 355

 Score = 84.7 bits (208), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 108/220 (49%), Gaps = 17/220 (7%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +G+   N  L E+AL H S S    +    + ERLEFLGD IL  ++  +++  F+  +E
Sbjct: 40  LGFYPRNIQLYEQALLHKSTSVRSDKGRPLNNERLEFLGDAILDAIVGDIVYKRFEGKRE 99

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G L+   + +V  ET +++A E+ L   I+ S+       S  + +  +  E+ I A+YL
Sbjct: 100 GFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAFEAFIGAIYL 155

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKVTFRSGPD 184
           D G E    F+++    R +   K  R   + K++L EW+   K  V+ E    F    D
Sbjct: 156 DQGYERCKQFMEQRIINRYIDLDKISRKEVNFKSKLIEWSQKNKMEVSFELIEQFL---D 212

Query: 185 HD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           HD  P F   V I GL    G   SK+ ++Q AA   +K+
Sbjct: 213 HDSNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 252


>gi|145224771|ref|YP_001135449.1| ribonuclease III [Mycobacterium gilvum PYR-GCK]
 gi|315445101|ref|YP_004077980.1| RNAse III [Mycobacterium sp. Spyr1]
 gi|145217257|gb|ABP46661.1| RNAse III [Mycobacterium gilvum PYR-GCK]
 gi|315263404|gb|ADU00146.1| RNAse III [Mycobacterium sp. Spyr1]
          Length = 234

 Score = 84.7 bits (208), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 72/206 (34%), Positives = 102/206 (49%), Gaps = 14/206 (6%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL  ALTH S S+      + ERLEFLGD +LGL I+  L++      EG+L+    S+V
Sbjct: 20  LLTIALTHRSYSYENGGVPTNERLEFLGDSVLGLTITEELYHRHPDRSEGDLAKLRASIV 79

Query: 80  SAETCSQVARELD---LASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           + +  + V R L    L +++ +         +  +SI AD VESL+ A+YL+ G   A 
Sbjct: 80  NTQALADVGRNLSEHGLGAYLLLGKGEENSGGADKSSILADGVESLLGAIYLEHGAVAAR 139

Query: 137 T-----FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
                 F D       L +G    D K+ LQE   +     P Y VT  +GPDHD  FT 
Sbjct: 140 EVILRLFSDLLDTAPTLGAG---LDWKSSLQELTASLALGAPSYHVT-STGPDHDKEFTA 195

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAA 217
           VV I+      G+  +K+ AE  AA+
Sbjct: 196 VVIIAEREHGTGVGRTKKEAELKAAS 221


>gi|315920801|ref|ZP_07917041.1| ribonuclease III [Bacteroides sp. D2]
 gi|313694676|gb|EFS31511.1| ribonuclease III [Bacteroides sp. D2]
          Length = 330

 Score = 84.7 bits (208), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 108/220 (49%), Gaps = 17/220 (7%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +G+   N  L E+AL H S S    +    + ERLEFLGD IL  ++  +++  F+  +E
Sbjct: 16  LGFYPRNIQLYEQALLHKSTSVRSDKGRPLNNERLEFLGDAILDAIVGDIVYKRFEGKRE 75

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G L+   + +V  ET +++A E+ L   I+ S+       S  + +  +  E+ I A+YL
Sbjct: 76  GFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAFEAFIGAIYL 131

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKVTFRSGPD 184
           D G E    F+++    R +   K  R   + K++L EW+   K  V+ E    F    D
Sbjct: 132 DQGYERCKQFMEQRIINRYIDLDKISRKEVNFKSKLIEWSQKNKMEVSFELIEQFL---D 188

Query: 185 HD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           HD  P F   V I GL    G   SK+ ++Q AA   +K+
Sbjct: 189 HDSNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 228


>gi|319440517|ref|ZP_07989673.1| ribonuclease III [Corynebacterium variabile DSM 44702]
          Length = 247

 Score = 84.7 bits (208), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 66/206 (32%), Positives = 100/206 (48%), Gaps = 6/206 (2%)

Query: 21  SLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            +L  AL+H S ++      + ERLEFLGD +LGL ++  L+  F    E ++S     +
Sbjct: 36  GMLRLALSHRSFANENGNLPNNERLEFLGDALLGLSVAEQLYRQFPDRSESDISKMRAGV 95

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138
           V+    ++VAREL +   I +         +   SI AD VE+++ A+YL+ G EVA   
Sbjct: 96  VNMYALAEVARELGMGGNILLGRGEEMTGGADKHSILADSVEAMLGAIYLECGFEVARAT 155

Query: 139 VDKYWKQR--ALKSGKFRRDAKTELQE-WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
           V + ++++     S     D KT L E  +  K    P Y    + GPDHD  F+  V  
Sbjct: 156 VLRIFERKITTAPSTGLTMDWKTVLLEKMSDLKISGDPVYASDVK-GPDHDQTFSATVSF 214

Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLK 221
            G A   G   +K+ AE  AA E  +
Sbjct: 215 DGEARGTGTGHTKKEAEHHAAREAYR 240


>gi|118587506|ref|ZP_01544930.1| ribonuclease III [Oenococcus oeni ATCC BAA-1163]
 gi|118431957|gb|EAV38699.1| ribonuclease III [Oenococcus oeni ATCC BAA-1163]
          Length = 243

 Score = 84.7 bits (208), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 105/215 (48%), Gaps = 8/215 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           +++  G  FAN+ LL +A T  +  + + E     Y+RLEFLGD ++ L+++  LF  + 
Sbjct: 20  IKEDFGIEFANQDLLLEAFTQGNYLNEHPEEKGRDYQRLEFLGDSVMQLIVADYLFTRYP 79

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             +EG+L+    ++V +++ S  AR      +IR+             S+  D+ E+ I 
Sbjct: 80  DWEEGQLTEMRIAMVQSKSFSHFARLAGFNRYIRLGKGEELSGARNRDSLLEDIWEAFIG 139

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182
           ALY D G +   TF++K +   A+  G F    D K++LQE       V  EYKV     
Sbjct: 140 ALYKDQGAKAVFTFLNKAFFP-AIDEGFFEEFIDYKSKLQELLQKAGSVDIEYKVENEDL 198

Query: 183 PD-HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            D   P F V V ++  A   G   S + AE+ AA
Sbjct: 199 SDPQKPHFEVTVFVNDKAIGSGSGRSIKIAEKRAA 233


>gi|199597132|ref|ZP_03210564.1| dsRNA-specific ribonuclease [Lactobacillus rhamnosus HN001]
 gi|258508646|ref|YP_003171397.1| ribonuclease III [Lactobacillus rhamnosus GG]
 gi|199591936|gb|EDZ00011.1| dsRNA-specific ribonuclease [Lactobacillus rhamnosus HN001]
 gi|257148573|emb|CAR87546.1| Ribonuclease III [Lactobacillus rhamnosus GG]
 gi|259649952|dbj|BAI42114.1| ribonuclease III [Lactobacillus rhamnosus GG]
          Length = 231

 Score = 84.7 bits (208), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 96/204 (47%), Gaps = 7/204 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNH 62
           S L +R G  F + SLL++A THSS  + ++E      ERLEFLGD +L L +S  L+  
Sbjct: 8   SELRQRYGIEFHDLSLLDEAFTHSSYVNEHKELGLKDNERLEFLGDAVLELTVSDYLYRK 67

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG+L+    + V     S  ++E     +I++     K       ++  D+ E+ 
Sbjct: 68  FPDKPEGDLTRIRAAAVQTAAFSAFSKEAHFDRYIKLGKGEEKAGARQRLTLLEDLFEAF 127

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFR 180
             ALYLD G E    F  +    + + +G+F   +D KT LQE       V   Y +   
Sbjct: 128 NGALYLDQGREANIKFAKRIIFPK-IDAGEFSADQDHKTALQETLQQNGDVAIVYHLLDE 186

Query: 181 SGPDHDPRFTVVVEISGLAPAQGM 204
            GP H+ +F V VE+ G     G 
Sbjct: 187 KGPAHERQFHVDVEVEGHVLGTGF 210


>gi|269957060|ref|YP_003326849.1| ribonuclease III [Xylanimonas cellulosilytica DSM 15894]
 gi|269305741|gb|ACZ31291.1| ribonuclease III [Xylanimonas cellulosilytica DSM 15894]
          Length = 239

 Score = 84.7 bits (208), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 106/222 (47%), Gaps = 13/222 (5%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
           + L +++G    +  LL  ALTH S +H        ERLEFLGD +LG++++  LF    
Sbjct: 13  TALLEKLGVPL-DPELLVLALTHRSFAHEAGGIPHNERLEFLGDSVLGVVVTEALFRRHP 71

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGEL+    + VS  + + VAR L+L S++ +    R+       SI +D VE+LI 
Sbjct: 72  DVSEGELAKMRAATVSQRSLAAVARRLELGSYVLLGKGERRTRGFDKDSILSDTVEALIG 131

Query: 125 ALYLDGGIEVAGTFV-----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           A Y+  G+E A   V     D       L +G    D KT LQE    +    P Y+V  
Sbjct: 132 ATYISHGLEAARELVHRLVDDTLDAAADLGAG---LDWKTSLQEACAERGYPAPTYEVDA 188

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             GP+H   F   V  +G     G   +K+ AEQ AA +  +
Sbjct: 189 E-GPEHARAFHAQV-TAGPVLGLGHGTAKKHAEQEAAEQAYR 228


>gi|257457873|ref|ZP_05623032.1| ribonuclease III [Treponema vincentii ATCC 35580]
 gi|257444586|gb|EEV19670.1| ribonuclease III [Treponema vincentii ATCC 35580]
          Length = 245

 Score = 84.7 bits (208), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 67/204 (32%), Positives = 106/204 (51%), Gaps = 8/204 (3%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFD 64
           T +K     F N SLL+ A  H S S+ + +   + ERLEFLGD +LG++++  L+    
Sbjct: 18  TFQKNAVCKFKNISLLDIAFHHRSFSNEHSDFPINNERLEFLGDSVLGMIVAAELYLAHP 77

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+L+    ++VS ++   +A  L++  ++ +             ++ AD +E+LI 
Sbjct: 78  EKPEGDLAKIKAAVVSEDSLFPIALNLNIDKYLMLGHGEEVSGGRKKKALLADALEALIG 137

Query: 125 ALYLDGGIEVAGTFVDKYW--KQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRS 181
           ALYLD G +V   FV K    + + ++  K R RD K+ LQE+   K+ + P+Y +    
Sbjct: 138 ALYLDSGFKVVQRFVLKIIEPQMQLVEQNKHRYRDYKSLLQEYVQKKYRIIPKYLLVETH 197

Query: 182 GPDHDPRFTVVVEISG--LAPAQG 203
           GPDHD  F V V I      PA G
Sbjct: 198 GPDHDRVFQVKVVIKDKEYEPALG 221


>gi|28572359|ref|NP_789139.1| ribonuclease III [Tropheryma whipplei TW08/27]
 gi|28410490|emb|CAD66876.1| ribonuclease III [Tropheryma whipplei TW08/27]
          Length = 215

 Score = 84.7 bits (208), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 61/178 (34%), Positives = 93/178 (52%), Gaps = 8/178 (4%)

Query: 22  LLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL  A  H S S  +   ++ ERLEFLGD +LGL++S  LF       EG+LS   + +V
Sbjct: 12  LLRTAFVHKSFSFENGACQNNERLEFLGDAVLGLVVSHYLFETCPEYTEGQLSAARSYIV 71

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
           S  + +Q+A+EL+L  F+ +    +       TS+ AD++ESLI A+ +D G E A  FV
Sbjct: 72  SGTSIAQIAKELNLGQFMLLGKGEKLAGGMDKTSLLADLLESLIGAVMVDQGFESARDFV 131

Query: 140 DKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
                ++  + G+F   D KT+LQ+    +      Y+V    GP H   F   V ++
Sbjct: 132 LALVGEKLRQVGEFSVDDPKTKLQKLTRTQL----VYEVV-TEGPPHSRTFKASVIVN 184


>gi|295086176|emb|CBK67699.1| RNAse III [Bacteroides xylanisolvens XB1A]
          Length = 355

 Score = 84.7 bits (208), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 108/220 (49%), Gaps = 17/220 (7%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +G+   N  L E+AL H S S    +    + ERLEFLGD IL  ++  +++  F+  +E
Sbjct: 40  LGFYPRNIQLYEQALLHKSTSVRSDKGRPLNNERLEFLGDAILDAIVGDIVYKRFEGKRE 99

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G L+   + +V  ET +++A E+ L   I+ S+       S  + +  +  E+ I A+YL
Sbjct: 100 GFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAFEAFIGAIYL 155

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKVTFRSGPD 184
           D G E    F+++    R +   K  R   + K++L EW+   K  V+ E    F    D
Sbjct: 156 DQGYERCKQFMEQRIINRYIDLDKISRKEVNFKSKLIEWSQKNKMEVSFELIEQFL---D 212

Query: 185 HD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           HD  P F   V I GL    G   SK+ ++Q AA   +K+
Sbjct: 213 HDSNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 252


>gi|224282434|ref|ZP_03645756.1| ribonuclease III [Bifidobacterium bifidum NCIMB 41171]
 gi|310286876|ref|YP_003938134.1| Ribonuclease III [Bifidobacterium bifidum S17]
 gi|311063777|ref|YP_003970502.1| ribonuclease III [Bifidobacterium bifidum PRL2010]
 gi|313139580|ref|ZP_07801773.1| ribonuclease 3 [Bifidobacterium bifidum NCIMB 41171]
 gi|309250812|gb|ADO52560.1| Ribonuclease III [Bifidobacterium bifidum S17]
 gi|310866096|gb|ADP35465.1| RncS Ribonuclease III [Bifidobacterium bifidum PRL2010]
 gi|313132090|gb|EFR49707.1| ribonuclease 3 [Bifidobacterium bifidum NCIMB 41171]
          Length = 255

 Score = 84.7 bits (208), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 75/210 (35%), Positives = 104/210 (49%), Gaps = 19/210 (9%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL +ALTH S SH +    +YERLEFLGD +L L+ +  LF       EG+L+      V
Sbjct: 22  LLIQALTHRSFSHEHPGTSNYERLEFLGDAVLELVSTETLFTLHPDMTEGQLAKMRAKAV 81

Query: 80  SAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE----V 134
           S E  S +AR+ L +  FI +     +   +  +SI  D+VESLI A +L+ GIE    V
Sbjct: 82  SEEALSAIARDKLHVGPFILLGHGEAESGGAEKSSILCDIVESLIGATFLEHGIEGARKV 141

Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
               +D    + A +      D KT L   AH      P Y+++  SGP++   FT    
Sbjct: 142 VHRLIDDTLAEVATEGPAL--DWKTSLTVKAHELGLDEPRYRMSV-SGPEYAQEFTAKAT 198

Query: 195 ISGLAP-----AQGMDCSKRAAEQVAAAEV 219
           I    P      +G   SKR A Q+AAAE+
Sbjct: 199 I---GPKDDIIGKGTGTSKRKA-QLAAAEM 224


>gi|333029521|ref|ZP_08457582.1| Ribonuclease 3 [Bacteroides coprosuis DSM 18011]
 gi|332740118|gb|EGJ70600.1| Ribonuclease 3 [Bacteroides coprosuis DSM 18011]
          Length = 276

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 112/222 (50%), Gaps = 21/222 (9%)

Query: 13  IGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +G+   +    ++AL H S +      Y ++ ERLEFLGD +L  +++ LLF++FD  KE
Sbjct: 27  LGFVPNDLRYYQQALIHKSSTKVSKDGYYQNNERLEFLGDAVLDAVVADLLFHYFDEKKE 86

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G L+   + +V  ET +++A E+ L   I  S+       S    +  +  E+LI A+YL
Sbjct: 87  GFLTNTRSKIVQRETLNKLAVEIGLDKHIIFST----KSSSHNNYMFGNAFEALIGAIYL 142

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFR----- 180
           D G +    F+++    + L   +  +   + K++L EW     G   +YK+TF      
Sbjct: 143 DQGYKKCKAFIEQRIIDQFLDLDRLAQTELNFKSKLIEW-----GQKNKYKITFELIEEF 197

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                +P F   V + G++  +G+  SK+ ++Q A+ + L +
Sbjct: 198 QDEQSNPVFQTEVLVEGISGGRGVGYSKKESQQNASEKTLDK 239


>gi|258539823|ref|YP_003174322.1| ribonuclease III [Lactobacillus rhamnosus Lc 705]
 gi|257151499|emb|CAR90471.1| Ribonuclease III [Lactobacillus rhamnosus Lc 705]
          Length = 231

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 96/204 (47%), Gaps = 7/204 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNH 62
           S L +R G  F + SLL++A THSS  + ++E      ERLEFLGD +L L +S  L+  
Sbjct: 8   SELRQRYGIEFHDLSLLDEAFTHSSYVNEHKELGLKDNERLEFLGDAVLELTVSDYLYRK 67

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG+L+    + V     S  ++E     +I++     K       ++  D+ E+ 
Sbjct: 68  FPDKPEGDLTRIRAAAVQTAAFSAFSKEAHFDRYIKLGKGEEKAGARQRLTLLEDLFEAF 127

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFR 180
             ALYLD G E    F  +    + + +G+F   +D KT LQE       V   Y +   
Sbjct: 128 NGALYLDQGREANIKFAKQIIFPK-IDAGEFSADQDHKTALQETLQQNGDVAIVYHLLDE 186

Query: 181 SGPDHDPRFTVVVEISGLAPAQGM 204
            GP H+ +F V VE+ G     G 
Sbjct: 187 KGPAHERQFHVDVEVEGRVLGTGF 210


>gi|160883983|ref|ZP_02064986.1| hypothetical protein BACOVA_01957 [Bacteroides ovatus ATCC 8483]
 gi|156110713|gb|EDO12458.1| hypothetical protein BACOVA_01957 [Bacteroides ovatus ATCC 8483]
          Length = 352

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 108/220 (49%), Gaps = 17/220 (7%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +G+   N  L E+AL H S S    +    + ERLEFLGD IL  ++  +++  F+  +E
Sbjct: 40  LGFYPRNIQLYEQALLHKSTSVRSDKGRPLNNERLEFLGDAILDAIVGDIVYKRFEGKRE 99

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G L+   + +V  ET +++A E+ L   I+ S+       S  + +  +  E+ I A+YL
Sbjct: 100 GFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAFEAFIGAIYL 155

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKVTFRSGPD 184
           D G E    F+++    R +   K  R   + K++L EW+   K  V+ E    F    D
Sbjct: 156 DQGYERCKLFMEQRIINRYIDLDKISRKEVNFKSKLIEWSQKNKMEVSFELIEQFL---D 212

Query: 185 HD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           HD  P F   V I GL    G   SK+ ++Q AA   +K+
Sbjct: 213 HDSNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 252


>gi|229552452|ref|ZP_04441177.1| ribonuclease III [Lactobacillus rhamnosus LMS2-1]
 gi|229314189|gb|EEN80162.1| ribonuclease III [Lactobacillus rhamnosus LMS2-1]
          Length = 231

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 96/204 (47%), Gaps = 7/204 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNH 62
           S L +R G  F + SLL++A THSS  + ++E      ERLEFLGD +L L +S  L+  
Sbjct: 8   SELRQRYGIEFHDLSLLDEAFTHSSYVNEHKELGLKDNERLEFLGDAVLELTVSDYLYRK 67

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG+L+    + V     S  ++E     +I++     K       ++  D+ E+ 
Sbjct: 68  FPDKPEGDLTRIRAAAVQTAAFSAFSKEAHFDRYIKLGKGEEKAGARQRLTLLEDLFEAF 127

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFR 180
             ALYLD G E    F  +    + + +G+F   +D KT LQE       V   Y +   
Sbjct: 128 NGALYLDQGREANIKFTKQIIFPK-IDAGEFSADQDHKTALQETLQQNGDVAIVYHLLDE 186

Query: 181 SGPDHDPRFTVVVEISGLAPAQGM 204
            GP H+ +F V VE+ G     G 
Sbjct: 187 KGPAHERQFHVDVEVEGRVLGTGF 210


>gi|237716739|ref|ZP_04547220.1| ribonuclease III [Bacteroides sp. D1]
 gi|262405515|ref|ZP_06082065.1| ribonuclease III [Bacteroides sp. 2_1_22]
 gi|298480489|ref|ZP_06998686.1| ribonuclease 3 [Bacteroides sp. D22]
 gi|229442722|gb|EEO48513.1| ribonuclease III [Bacteroides sp. D1]
 gi|262356390|gb|EEZ05480.1| ribonuclease III [Bacteroides sp. 2_1_22]
 gi|298273310|gb|EFI14874.1| ribonuclease 3 [Bacteroides sp. D22]
          Length = 331

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 108/220 (49%), Gaps = 17/220 (7%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +G+   N  L E+AL H S S    +    + ERLEFLGD IL  ++  +++  F+  +E
Sbjct: 16  LGFYPRNIQLYEQALLHKSTSVRSDKGRPLNNERLEFLGDAILDAIVGDIVYKRFEGKRE 75

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G L+   + +V  ET +++A E+ L   I+ S+       S  + +  +  E+ I A+YL
Sbjct: 76  GFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAFEAFIGAIYL 131

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKVTFRSGPD 184
           D G E    F+++    R +   K  R   + K++L EW+   K  V+ E    F    D
Sbjct: 132 DQGYERCKQFMEQRIINRYIDLDKISRKEVNFKSKLIEWSQKNKMEVSFELIEQFL---D 188

Query: 185 HD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           HD  P F   V I GL    G   SK+ ++Q AA   +K+
Sbjct: 189 HDSNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 228


>gi|159904268|ref|YP_001551612.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9211]
 gi|159889444|gb|ABX09658.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9211]
          Length = 249

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 107/206 (51%), Gaps = 7/206 (3%)

Query: 21  SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
           ++  +ALTH+S +   + ++ERLEFLGD +L L  S  +  +F + K G+ S     LVS
Sbjct: 43  NIFNEALTHTSTNS--KTNHERLEFLGDAVLRLAASEYIEENFPNLKVGDRSALRAQLVS 100

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY-LDGGIEVAGTFV 139
            E  ++V +E+++  F+ +     KD  +  T +QA+  E++I ALY     I+    ++
Sbjct: 101 DEWLTKVGQEINIKQFMLIGPKAHKDKAASAT-LQAEATEAMIGALYECLKDIKSIKVWL 159

Query: 140 DKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEIS 196
             YW +  +++     R ++K+ LQEW+       P YK    S    DP RF   V I+
Sbjct: 160 KPYWDKTSKSVLEDPHRLNSKSALQEWSQGNGLDIPIYKNEELSQKHGDPRRFFCKVLIN 219

Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLKR 222
                +G   S++ AE+ AA + L +
Sbjct: 220 KKILGEGWGSSRKQAEKEAALKALNK 245


>gi|237720469|ref|ZP_04550950.1| ribonuclease III [Bacteroides sp. 2_2_4]
 gi|229450220|gb|EEO56011.1| ribonuclease III [Bacteroides sp. 2_2_4]
          Length = 328

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 108/220 (49%), Gaps = 17/220 (7%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +G+   N  L E+AL H S S    +    + ERLEFLGD IL  ++  +++  F+  +E
Sbjct: 16  LGFYPRNIQLYEQALLHKSTSVRSDKGRPLNNERLEFLGDAILDAIVGDIVYKRFEGKRE 75

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G L+   + +V  ET +++A E+ L   I+ S+       S  + +  +  E+ I A+YL
Sbjct: 76  GFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAFEAFIGAIYL 131

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKVTFRSGPD 184
           D G E    F+++    R +   K  R   + K++L EW+   K  V+ E    F    D
Sbjct: 132 DQGYERCKLFMEQRIINRYIDLDKISRKEVNFKSKLIEWSQKNKMEVSFELIEQFL---D 188

Query: 185 HD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           HD  P F   V I GL    G   SK+ ++Q AA   +K+
Sbjct: 189 HDSNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 228


>gi|83319588|ref|YP_424465.1| ribonuclease III [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
 gi|123535692|sp|Q2SRZ8|RNC_MYCCT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|83283474|gb|ABC01406.1| ribonuclease III [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
          Length = 232

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 112/215 (52%), Gaps = 16/215 (7%)

Query: 19  NRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           ++ + ++ALTH+S ++    + SY+RLEFLGD IL + +S  LF H+    EGEL+   +
Sbjct: 16  DQQIYKEALTHNSYANERKLKYSYQRLEFLGDAILQMYVSKFLFFHYSKLGEGELTRLRS 75

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           S V  E+ S++A++++L   IR+             SI AD+ E+L AA+Y+D   +  G
Sbjct: 76  STVREESLSRIAKDINLGQLIRLGHGELMTKGYEKQSILADIFEALTAAVYIDQNED--G 133

Query: 137 TFVDKYWKQRAL----KSGKF---RRDAKTELQEWAHAKFGVTPEYKVTFRSG--PDHDP 187
             +   W ++ L    K   F    +D K+ELQE   ++     +Y +        ++  
Sbjct: 134 LLI---WLEQTLFKYMKDPTFINVTKDFKSELQELLQSEKRSDLKYIIENEEFFVNENKT 190

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            +TV V + G     G   SK+ AEQ AA++ L +
Sbjct: 191 LYTVSVNLDGQKFGVGKGYSKQEAEQNAASDCLSK 225


>gi|28493529|ref|NP_787690.1| ribonuclease III [Tropheryma whipplei str. Twist]
 gi|81437751|sp|Q83FY2|RNC_TROWT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|90101654|sp|Q83I82|RNC_TROW8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|28476571|gb|AAO44659.1| ribonuclease III [Tropheryma whipplei str. Twist]
          Length = 223

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/178 (34%), Positives = 93/178 (52%), Gaps = 8/178 (4%)

Query: 22  LLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL  A  H S S  +   ++ ERLEFLGD +LGL++S  LF       EG+LS   + +V
Sbjct: 20  LLRTAFVHKSFSFENGACQNNERLEFLGDAVLGLVVSHYLFETCPEYTEGQLSAARSYIV 79

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
           S  + +Q+A+EL+L  F+ +    +       TS+ AD++ESLI A+ +D G E A  FV
Sbjct: 80  SGTSIAQIAKELNLGQFMLLGKGEKLAGGMDKTSLLADLLESLIGAVMVDQGFESARDFV 139

Query: 140 DKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
                ++  + G+F   D KT+LQ+    +      Y+V    GP H   F   V ++
Sbjct: 140 LALVGEKLRQVGEFSVDDPKTKLQKLTRTQL----VYEVV-TEGPPHSRTFKASVIVN 192


>gi|329964465|ref|ZP_08301519.1| ribonuclease III [Bacteroides fluxus YIT 12057]
 gi|328524865|gb|EGF51917.1| ribonuclease III [Bacteroides fluxus YIT 12057]
          Length = 294

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 113/225 (50%), Gaps = 13/225 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y    K +G+   N  + ++AL H S S   ++    + ERLEFLGD IL  ++  +++ 
Sbjct: 20  YLCFYKILGFFPHNIQIYQQALLHKSTSIRSEKGRPLNNERLEFLGDAILDAIVGDIVYK 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HFD  +EG L+   + +V  ET +++A E+ L   ++ S+       S  + +  +  E+
Sbjct: 80  HFDGRREGFLTNTRSKIVQRETLNKLAVEIGLDKLVKYST----RSSSHNSYMYGNAFEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKV 177
            I A+YLD G +    F+++   +  +   K  R   + K++L EW+   K  V+ E  +
Sbjct: 136 FIGAIYLDQGYDRCKQFMEEKIFKNYIDLDKMSRKEVNFKSKLIEWSQKNKMEVSFEL-I 194

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                 D++P F   V I G++   G   SK+ ++Q AA   LK+
Sbjct: 195 EQLLDEDYNPMFHTEVRIEGISAGTGTGYSKKESQQNAARMTLKK 239


>gi|319948353|ref|ZP_08022497.1| ribonuclease III [Dietzia cinnamea P4]
 gi|319437984|gb|EFV92960.1| ribonuclease III [Dietzia cinnamea P4]
          Length = 237

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 106/219 (48%), Gaps = 9/219 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           S L+  +G A     L  +ALTH S +  H      ERLEFLGD +L L+++  L+N + 
Sbjct: 6   SALDAVLGVALPA-GLATQALTHRSYAYEHGGLPHNERLEFLGDAVLELVVTEYLYNAYP 64

Query: 65  SAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVES 121
              EG+L+    SLV+    + +AREL    L   +R+             SI AD +E+
Sbjct: 65  DRPEGDLAKIRASLVNTYVLADIARELGDGGLGRHLRLGRGEELTGGRDKHSILADTLEA 124

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           +  ++YL  G+E A   ++K    R   +       D KT LQE   +       Y++T 
Sbjct: 125 VFGSVYLTHGLETARGLIEKIIGDRLTVVPHLGAALDWKTSLQEKCASLGRSKARYEIT- 183

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
            +GPDHD  F+ VV +      +G   +K+ AEQ AA +
Sbjct: 184 STGPDHDKTFSAVVFVGDDPLGEGTGRTKKEAEQKAAEQ 222


>gi|153807268|ref|ZP_01959936.1| hypothetical protein BACCAC_01546 [Bacteroides caccae ATCC 43185]
 gi|149130388|gb|EDM21598.1| hypothetical protein BACCAC_01546 [Bacteroides caccae ATCC 43185]
          Length = 329

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 108/218 (49%), Gaps = 13/218 (5%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +G+   N  L E+AL H S S    +    + ERLEFLGD IL  ++  +++  F+  +E
Sbjct: 40  LGFYPRNIQLYEQALLHKSSSVRSDKGRPLNNERLEFLGDAILDAIVGDIVYKRFEGKRE 99

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G L+   + +V  ET +++A E+ L   I+ S+       S  + +  +  E+ I A+YL
Sbjct: 100 GFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAFEAFIGAIYL 155

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAH-AKFGVTPEYKVTFRSGPD 184
           D G E    F+++    R +   K  R   + K++L EW+  +K  V+ E    F    D
Sbjct: 156 DQGYERCKQFMEQRIINRYIDLDKISRKEVNFKSKLIEWSQKSKLEVSFELIEQFLDQ-D 214

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            +P F   V I GL    G   SK+ ++Q AA   +K+
Sbjct: 215 SNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 252


>gi|260642610|ref|ZP_05416578.2| ribonuclease III [Bacteroides finegoldii DSM 17565]
 gi|260621352|gb|EEX44223.1| ribonuclease III [Bacteroides finegoldii DSM 17565]
          Length = 270

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 107/218 (49%), Gaps = 13/218 (5%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +G+   N  L E+AL H S S   ++    + ERLEFLGD IL  ++  +++ HF+  +E
Sbjct: 27  LGFYPRNIQLYEQALLHKSTSLRSEKGRPLNNERLEFLGDAILDAIVGDIVYKHFEGKRE 86

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G L+   + +V  ET +++A E+ L   I+ S+       S  + +  +  E+ I A+YL
Sbjct: 87  GFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAFEAFIGAIYL 142

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKVTFRSGPD 184
           D G E    F+++    R +      R   + K++L EW+   K  V+ E    F    D
Sbjct: 143 DQGYERCKQFMEERIINRYIDLDILSRKEVNFKSKLIEWSQKNKMEVSFELIEQFLDR-D 201

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            +P F   V I G     G   SK+ ++Q AA   +K+
Sbjct: 202 SNPVFQTEVRIEGFPAGTGTGYSKKESQQNAAQMAIKK 239


>gi|313665378|ref|YP_004047249.1| ribonuclease III [Mycoplasma leachii PG50]
 gi|312949374|gb|ADR23970.1| ribonuclease III [Mycoplasma leachii PG50]
          Length = 232

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/215 (31%), Positives = 110/215 (51%), Gaps = 16/215 (7%)

Query: 19  NRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           ++ + ++ALTH+S ++    + SY+RLEFLGD IL +  S  LF ++    EGEL+    
Sbjct: 16  DQQIYKEALTHNSYANERKLKYSYQRLEFLGDAILQMYTSKFLFFNYSKLGEGELTRLRA 75

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           S+V  E+ S++AR+++L   IR+             SI AD+ E+L AA+YLD   E  G
Sbjct: 76  SIVREESLSRIARDINLGQLIRLGHSELMTKGYEKQSILADIFEALTAAIYLDQSEE--G 133

Query: 137 TFVDKYWKQRAL----KSGKF---RRDAKTELQEWAHAKFGVTPEYKVTFRS--GPDHDP 187
             +   W ++ L    K   F    +D K+ELQE   ++     +Y          ++  
Sbjct: 134 LLI---WLEQTLFKYMKDPTFINVTKDFKSELQELLQSEKRSDLKYITENEEFFANENKT 190

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            +TV + + G     G   SK+ AEQ AA++ L +
Sbjct: 191 LYTVSINLDGQKFGVGKGYSKQEAEQNAASDCLSK 225


>gi|290343597|ref|YP_003494964.1| hypothetical protein OTV1_125 [Ostreococcus tauri virus 1]
 gi|260161012|emb|CAY39713.1| hypothetical protein OTV1_125 [Ostreococcus tauri virus 1]
          Length = 240

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 105/214 (49%), Gaps = 10/214 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDS 65
           +E+ +G    + S  ++A TH S    Y++   S+E LEF+GD +LG +I+  LF+ ++ 
Sbjct: 8   IEQLVGTKIRDLSFYQRAFTHKSALKEYEQFNVSFETLEFMGDSVLGFIITKFLFDRYEE 67

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
            +EG L+     LV +ET + +A +L L   + +     ++  +    I  DV E+L+ A
Sbjct: 68  RQEGFLTKARTKLVRSETLAAIALKLGLNKLVLMDEKGTRNGWNNNPKILEDVFEALVGA 127

Query: 126 LYLDGGIEVAGTFVDKYW---KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +Y+D G+  A  FV + +   K   L S     + K +L           PEY+V     
Sbjct: 128 IYMDLGLLHAKQFVLRIYNDPKYIDLNSIMVDDNFKDKLMRHCQVNNLPLPEYEVV---- 183

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
              +  F V   I+G    +G   SK+ AEQ+AA
Sbjct: 184 SHWEGNFYVDALINGRFCGRGQAKSKKQAEQLAA 217


>gi|163955118|ref|YP_001648222.1| hypothetical protein OsV5_145f [Ostreococcus virus OsV5]
 gi|163638567|gb|ABY27926.1| hypothetical protein OsV5_145f [Ostreococcus virus OsV5]
          Length = 241

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 105/214 (49%), Gaps = 10/214 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDS 65
           +E+ +G    + S  ++A TH S    Y++   S+E LEF+GD +LG +I+  LF+ ++ 
Sbjct: 8   IEQLVGTKIRDLSFYQRAFTHKSALKEYEQFNVSFETLEFMGDSVLGFIITKFLFDRYEE 67

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
            +EG L+     LV +ET + +A +L L   + +     ++  +    I  DV E+L+ A
Sbjct: 68  RQEGFLTKARTKLVRSETLAAIALKLGLNKLVLMDEKGTRNGWNNNPKILEDVFEALVGA 127

Query: 126 LYLDGGIEVAGTFVDKYW---KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +Y+D G+  A  FV + +   K   L S     + K +L           PEY+V     
Sbjct: 128 IYMDLGLLHAKQFVLRIYNDPKYIDLNSIMVDDNFKDKLMRHCQVNNLPLPEYEVV---- 183

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
              +  F V   I+G    +G   SK+ AEQ+AA
Sbjct: 184 SHWEGNFYVDALINGRFCGRGQAKSKKQAEQLAA 217


>gi|294660491|ref|NP_853275.2| ribonuclease 3 [Mycoplasma gallisepticum str. R(low)]
 gi|284812153|gb|AAP56843.2| Ribonuclease 3 (Ribonuclease III) [Mycoplasma gallisepticum str.
           R(low)]
 gi|284930761|gb|ADC30700.1| Ribonuclease 3 (Ribonuclease III) [Mycoplasma gallisepticum str.
           R(high)]
 gi|284931334|gb|ADC31272.1| Ribonuclease 3 (Ribonuclease III) [Mycoplasma gallisepticum str. F]
          Length = 655

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 110/220 (50%), Gaps = 18/220 (8%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           K+      N  L E+ALTH+S ++    + +Y+RLEFLGD I+  +++  LFNH DS+ E
Sbjct: 437 KKFKVVTNNIGLYEEALTHNSYANEMHLKYNYQRLEFLGDAIINKIVAEYLFNHSDSS-E 495

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GE++     ++ + T  + A +L+L ++IRV   L+  +      I  D+ E+ I A+YL
Sbjct: 496 GEMTKDRIKIIQSNTLIKAATQLELINYIRVGEGLK--IAPLSPKILEDIFEAFIGAMYL 553

Query: 129 DGG----IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK-FGVTPEYKVTF-RSG 182
           D G     ++    +  Y+++  L       D K+  QE  H+    +   Y+ T+ R  
Sbjct: 554 DQGEYAVRKILNDTIIGYYQKGQLTEN---TDYKSIFQEIIHSTGLNMKIHYERTYDRQK 610

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             H    TV +   G+   +G D S   AE  AA E + +
Sbjct: 611 NLH----TVSLYAGGIMYGEGKDSSTHKAEIKAAKEAISK 646


>gi|298387131|ref|ZP_06996685.1| ribonuclease 3 [Bacteroides sp. 1_1_14]
 gi|298260281|gb|EFI03151.1| ribonuclease 3 [Bacteroides sp. 1_1_14]
          Length = 324

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 109/220 (49%), Gaps = 17/220 (7%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +G+   N  + E+AL H S S   ++    + ERLEFLGD IL  ++  +++  F+  +E
Sbjct: 40  LGFYPHNIQIYEQALLHKSSSVRSEKGRPLNNERLEFLGDAILDAIVGDIVYKRFEGKRE 99

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G L+   + +V  ET +++A E+ L   I+ S+       S  + +  +  E+ I A+YL
Sbjct: 100 GFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAFEAFIGAIYL 155

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKVTFRSGPD 184
           D G E    F+++    R +   K  R   + K++L EW+   K  V+ E    F    D
Sbjct: 156 DQGYERCKQFMEQRIINRYIDLDKISRKEVNFKSKLIEWSQKNKMEVSFELIEQFL---D 212

Query: 185 HD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           HD  P F   V I GL    G   SK+ ++Q AA   +K+
Sbjct: 213 HDSNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 252


>gi|305681508|ref|ZP_07404315.1| ribonuclease III [Corynebacterium matruchotii ATCC 14266]
 gi|305659713|gb|EFM49213.1| ribonuclease III [Corynebacterium matruchotii ATCC 14266]
          Length = 259

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 103/205 (50%), Gaps = 7/205 (3%)

Query: 22  LLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           +L  ALTH S ++      + ERLEFLGD +LGL ++  LF  + +  E ++S    S+V
Sbjct: 38  ILTLALTHRSFANENGMLPNNERLEFLGDAVLGLSVAGKLFEQYPTRPESDISKMRASIV 97

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
           S    + +ARE+ L  +I +             SI AD  E+L+ A+Y   G ++A   V
Sbjct: 98  SRYGLADIAREIGLGQYILLGKGELLTDGRNKDSILADTTEALLGAIYRIHGFDIARDVV 157

Query: 140 DKYWKQRA--LKSGKFRRDAKTELQE-WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
            + +  +    ++    +D KT LQE  A  K  + P Y+ T   GP+H+  FT  V + 
Sbjct: 158 LRLFAHKISHAQATALHQDWKTSLQERLAEYKLPM-PVYEAT-SVGPEHEQVFTASVNVL 215

Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLK 221
           G    +G   +K+ AEQ  A + L+
Sbjct: 216 GRIIGEGTGTNKKLAEQAGAHQALE 240


>gi|229140493|ref|ZP_04269048.1| Ribonuclease 3 [Bacillus cereus BDRD-ST26]
 gi|228643054|gb|EEK99330.1| Ribonuclease 3 [Bacillus cereus BDRD-ST26]
          Length = 210

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/204 (33%), Positives = 101/204 (49%), Gaps = 7/204 (3%)

Query: 25  KALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
           +A THSS  + ++    E  ERLEFLGD +L L +S  LF  + +  EGEL+    ++V 
Sbjct: 3   QAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVC 62

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140
             +  + A EL   S + +             ++ ADV E+ I ALYLD G+E    F+ 
Sbjct: 63  EPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEAFIGALYLDQGLETVWGFLK 122

Query: 141 KYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
           +    + +  G F    D K++LQE          EY++    GP H+  F   V ++ +
Sbjct: 123 EIVYPK-INEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVTLNNV 181

Query: 199 APAQGMDCSKRAAEQVAAAEVLKR 222
           A   G   SK+ AEQ AAAE LK+
Sbjct: 182 ALGLGSGKSKKEAEQQAAAEALKK 205


>gi|225021993|ref|ZP_03711185.1| hypothetical protein CORMATOL_02025 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945279|gb|EEG26488.1| hypothetical protein CORMATOL_02025 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 259

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 103/205 (50%), Gaps = 7/205 (3%)

Query: 22  LLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           +L  ALTH S ++      + ERLEFLGD +LGL ++  LF  + +  E ++S    S+V
Sbjct: 38  ILTLALTHRSFANENGMLPNNERLEFLGDAVLGLSVAGKLFEQYPTRPESDISKMRASIV 97

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
           S    + +ARE+ L  +I +             SI AD  E+L+ A+Y   G ++A   V
Sbjct: 98  SRYGLADIAREIGLGQYILLGKGELLTDGRNKDSILADTTEALLGAIYRIHGFDIARDVV 157

Query: 140 DKYWKQRA--LKSGKFRRDAKTELQE-WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
            + +  +    ++    +D KT LQE  A  K  + P Y+ T   GP+H+  FT  V + 
Sbjct: 158 LRLFAHKISHAQATALHQDWKTSLQERLAEYKLPM-PVYEAT-SVGPEHEQVFTASVNVL 215

Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLK 221
           G    +G   +K+ AEQ  A + L+
Sbjct: 216 GRIIGEGTGTNKKLAEQAGAHQALE 240


>gi|227892635|ref|ZP_04010440.1| ribonuclease III [Lactobacillus ultunensis DSM 16047]
 gi|227865567|gb|EEJ72988.1| ribonuclease III [Lactobacillus ultunensis DSM 16047]
          Length = 228

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/204 (32%), Positives = 96/204 (47%), Gaps = 11/204 (5%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNH 62
           + L+      F N  LLE+A THSS S+ + +     YE+LEFLGD +L L +S  L+ H
Sbjct: 8   NKLKDEYNIEFNNEKLLEEAFTHSSYSNEHPDDGIRDYEKLEFLGDAVLELAVSDYLYRH 67

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +    EGEL+   +++V  E  S+ A E      I + +   K       ++  DV E+ 
Sbjct: 68  YPKLNEGELTRLRSNIVRTEGFSEFAIECGFQKEIHLGNGEEKAGARKRKTLLEDVFEAF 127

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFR 180
             AL+LD G+     F+        +  G+F   RD KT+LQE       V  EY V   
Sbjct: 128 NGALFLDQGMPAVQHFL-HLTVYPLIDKGEFDDSRDYKTDLQELLQQNGPVDIEYTVVSE 186

Query: 181 SG-PDHDPRFTVVVEISGLAPAQG 203
           S  P H   F V ++I+     QG
Sbjct: 187 SQLPSH---FVVELKINDKVQTQG 207


>gi|239631967|ref|ZP_04674998.1| ribonuclease 3 [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|301066653|ref|YP_003788676.1| dsRNA-specific ribonuclease [Lactobacillus casei str. Zhang]
 gi|239526432|gb|EEQ65433.1| ribonuclease 3 [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|300439060|gb|ADK18826.1| dsRNA-specific ribonuclease [Lactobacillus casei str. Zhang]
          Length = 231

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 97/204 (47%), Gaps = 7/204 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNH 62
           S L +R G  F + SLL++A THSS  + ++E      ERLEFLGD +L L +S  L+  
Sbjct: 8   SELRQRYGIEFHDLSLLDEAFTHSSYVNEHKELGLKDNERLEFLGDAVLELTVSDYLYRK 67

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG+L+    + V     S  ++E     +I++     K       ++  D+ E+ 
Sbjct: 68  FPDKPEGDLTRIRAAAVQTAAFSAFSKEAHFDRYIKLGKGEEKAGARKRLTLLEDLFEAF 127

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFR 180
             ALYLD G +    F ++    + + +G+F   +D KT LQE       V   Y +   
Sbjct: 128 NGALYLDQGRDANIRFAEQIIFPK-IDAGEFSADQDHKTALQEVLQQNGDVAIVYHLLDE 186

Query: 181 SGPDHDPRFTVVVEISGLAPAQGM 204
            GP H+ +F V VE+ G     G 
Sbjct: 187 QGPAHERQFHVDVEVDGRVLGTGF 210


>gi|291618446|ref|YP_003521188.1| Rnc [Pantoea ananatis LMG 20103]
 gi|291153476|gb|ADD78060.1| Rnc [Pantoea ananatis LMG 20103]
          Length = 176

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 81/159 (50%), Gaps = 3/159 (1%)

Query: 54  LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
           +I+  L++ F    EG++S    +LV   T +++ARE DL   +R+     K       S
Sbjct: 1   MIANALYHRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRES 60

Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGV 171
           I AD VE+LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +   
Sbjct: 61  ILADTVEALIGGVFLDSDIQTVEKLILDWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLP 120

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLA-PAQGMDCSKR 209
            P Y V    G  HD  FT+  ++SG+A P  G+  S+R
Sbjct: 121 LPSYLVVQVRGEAHDQEFTIHCQVSGMAEPVVGVGSSRR 159


>gi|291572035|dbj|BAI94307.1| ribonuclease III [Arthrospira platensis NIES-39]
          Length = 246

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/198 (31%), Positives = 105/198 (53%), Gaps = 12/198 (6%)

Query: 5   RYSTLEK---RIGYAFANR---SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58
           R   LEK   R+G +  ++    LL+ ALTH S+S   Q++YE+LEF+GD ++ L  S L
Sbjct: 12  RQHQLEKLIERLGLSPQHKIAWQLLDLALTHPSVSS--QDNYEQLEFVGDSVVRLAASEL 69

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF  + +A  GE +   + LVS    ++++    L  ++ V     +D     + + AD 
Sbjct: 70  LFETYPNAPVGEFAAVRSILVSDRILAEISESYGLGRYLLVGGSATRDRLGEESRL-ADC 128

Query: 119 VESLIAALYLD-GGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEY 175
            E+++AALYL    +E+   ++D +  +RA +  +   R++ K  LQEW  + + + P+Y
Sbjct: 129 FEAVLAALYLSTNTLELIRPWLDPHLLERATEIFNDPARQNYKAALQEWTQSCYKILPQY 188

Query: 176 KVTFRSGPDHDPRFTVVV 193
           KV        + RFT  V
Sbjct: 189 KVNETGYAGDEGRFTASV 206


>gi|220912984|ref|YP_002488293.1| ribonuclease III [Arthrobacter chlorophenolicus A6]
 gi|219859862|gb|ACL40204.1| Ribonuclease III [Arthrobacter chlorophenolicus A6]
          Length = 242

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/212 (32%), Positives = 98/212 (46%), Gaps = 20/212 (9%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           L KR+G    +   L  ALTH S ++      + ERLEFLGD ILG  ++  L+      
Sbjct: 7   LLKRLGVTI-DAGTLRLALTHRSYAYENGGIPTNERLEFLGDSILGFSVTDSLYRDNPDL 65

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGEL+ R +++VS    + + R L +  FI +    +        SI AD +E+LI A 
Sbjct: 66  PEGELAKRRSAVVSTRALANIGRSLGIGEFIYLGQGEKLTEGKNKASILADTMEALIGAT 125

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDA---------KTELQEWAHAKFGVTPEYKV 177
           Y+   IE A   V +         G   +DA         KT +QE A ++   T  Y V
Sbjct: 126 YVSNDIETARQLVMRLI-------GPLLKDAAVLGAGTDWKTSIQELAASRQLGTIHYAV 178

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
              +GPDH   F+ V+ I G    +G   SK+
Sbjct: 179 EG-AGPDHARTFSAVLNIGGKPYGKGTGHSKK 209


>gi|226365983|ref|YP_002783766.1| ribonuclease III [Rhodococcus opacus B4]
 gi|226244473|dbj|BAH54821.1| ribonuclease III [Rhodococcus opacus B4]
          Length = 252

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/205 (34%), Positives = 104/205 (50%), Gaps = 10/205 (4%)

Query: 21  SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           SLL  ALTH S ++      + ERLEFLGD +LG+ ++  L+       EG+L+    S+
Sbjct: 30  SLLTLALTHRSYAYENGGLPTNERLEFLGDSVLGVTVTEKLYLAHPDKSEGDLAKIRASI 89

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSF---MTSIQADVVESLIAALYLDGGIEVA 135
           V+    ++VAR L            + +  +      SI AD +ES++ A++L+ GI+ A
Sbjct: 90  VNMHALAEVARSLGEGGLGAHLLLGKGEEMTGGRDKPSILADGMESILGAIHLEHGIDTA 149

Query: 136 GTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
              V   +    QRA + G    D KT LQE    +    P Y++T  +GPDHD  FT  
Sbjct: 150 RRVVLDLFSDLLQRAPRLGAG-LDWKTSLQELTAERGVGVPAYEITA-TGPDHDKEFTAT 207

Query: 193 VEISGLAPAQGMDCSKRAAEQVAAA 217
           V + G     G+  SK+ AEQ AA+
Sbjct: 208 VIVGGKPLGVGIGRSKKEAEQKAAS 232


>gi|325290420|ref|YP_004266601.1| RNAse III [Syntrophobotulus glycolicus DSM 8271]
 gi|324965821|gb|ADY56600.1| RNAse III [Syntrophobotulus glycolicus DSM 8271]
          Length = 259

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 104/211 (49%), Gaps = 8/211 (3%)

Query: 12  RIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           ++G       LL  ALTH S +     S +E+ +RLEFLGD +L  +I   L+  +    
Sbjct: 39  KLGLENPENQLLYTALTHPSYTFENPASGRENNQRLEFLGDAVLDFVIGEYLYLKYRDKP 98

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EGEL+    ++V+  T ++ AR + +   + +    +        SI AD +E++I A+Y
Sbjct: 99  EGELTKMRAAVVNESTLARQARGIGIGQALFLGKGEQYSGGRERASILADALEAVIGAVY 158

Query: 128 LDGGIEVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           L  G E   +F+ K    +  A+  G +  D KT LQE A  K  +   Y++    GPDH
Sbjct: 159 LQYGFEEVRSFILKMLVPEIEAIDKGNY-GDFKTILQERAQ-KEDMEVSYRIIDEQGPDH 216

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           +  FT  V +      +G   +K+ AEQ AA
Sbjct: 217 NKLFTAGVYVQNNFYGKGTGKTKKEAEQHAA 247


>gi|119717505|ref|YP_924470.1| ribonuclease III [Nocardioides sp. JS614]
 gi|119538166|gb|ABL82783.1| RNAse III [Nocardioides sp. JS614]
          Length = 276

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/213 (30%), Positives = 102/213 (47%), Gaps = 13/213 (6%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH 62
            Y+ L   +G    +  LLE+ALTH S ++      + ERLEFLGD +LG++++  L+  
Sbjct: 34  NYAELRAALGDPTLDPELLERALTHRSFAYENGGLPTNERLEFLGDSVLGVVVTETLYLK 93

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
                EG L+    ++V+A   ++V R + +   +++             SI +D VE++
Sbjct: 94  HPDLSEGRLAKLRAAVVNARALAEVGRRIGVGEHVKLGRGEESTGGRHKASILSDTVEAV 153

Query: 123 IAALYLDGGIEVAGTFVDKYWKQ-----RALKSGKFRRDAKTELQEW-AHAKFGVTPEYK 176
           I A++L GG   +   V + +        AL +G    D KT LQE  A    GV PEY 
Sbjct: 154 IGAVHLSGGFTTSAVVVHRLFDPLIEAASALGAG---LDWKTSLQELSAEHGLGV-PEY- 208

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           V    GPDH   FT  V +       G+  SK+
Sbjct: 209 VIEDDGPDHMKTFTAQVRVGEGLYGNGVGRSKK 241


>gi|330444350|ref|YP_004377336.1| ribonuclease III [Chlamydophila pecorum E58]
 gi|328807460|gb|AEB41633.1| ribonuclease III [Chlamydophila pecorum E58]
          Length = 231

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 97/215 (45%), Gaps = 3/215 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65
           +E ++ + F    LL  A TH S  +      E  ERLEFLGD +LGL+++  LF  F +
Sbjct: 10  IESKLNFTFTQPQLLVTAFTHPSYRNESPVPIEDSERLEFLGDAVLGLIVTEHLFLLFPN 69

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
            +EG LS    SLV A  CS  A  L +   + +    R        S QA++ E+++ A
Sbjct: 70  LEEGVLSTIRASLVDASACSGYAESLGVCENLLIGKGERLQNQRGKLSSQANLFEAILGA 129

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           +YLDGG+  A          +         + K  LQ++        P+Y+ T     + 
Sbjct: 130 IYLDGGLSPARQLTVPLLPSKEKLQPLMFGNPKNLLQQFTQKHLRTLPKYQATQYVSKEG 189

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                V V I      +G+  SK+ AE++AA   L
Sbjct: 190 VMSHHVQVFIHDELWGEGVAHSKKEAEKLAAQHAL 224


>gi|194333018|ref|YP_002014878.1| Ribonuclease III [Prosthecochloris aestuarii DSM 271]
 gi|194310836|gb|ACF45231.1| Ribonuclease III [Prosthecochloris aestuarii DSM 271]
          Length = 277

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 98/215 (45%), Gaps = 10/215 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE--------SYERLEFLGDRILGLLISTLLF 60
           +E+ I    A+  + + A TH S  H   +        S +RLEFLGD +L L+IS  L+
Sbjct: 44  VEQLIRQPCASVDIYKTAFTHRSFVHDQHQGSSPAPFDSNQRLEFLGDAVLDLIISEHLY 103

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  + EG LS   + +V+ ++ +  A+ + L + + +     ++      +  AD  E
Sbjct: 104 KLFPESDEGALSSTRSKIVNRKSLADFAQAIALGNQLIIGESADEEKIRKSEATMADAFE 163

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI A+YLD G+     F+D +        K      + K+ L E+A A     P+Y + 
Sbjct: 164 ALIGAIYLDKGLPAVQRFIDDHVMTIVDVPKLATIEHNHKSRLIEFAQANQLSHPQYTII 223

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
              G +H   FTV V   G     G    K+ AEQ
Sbjct: 224 REEGAEHQKTFTVEVSFDGKPFGTGTAARKKDAEQ 258


>gi|87117424|gb|ABD19999.1| Rnc [Shigella flexneri]
          Length = 178

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 90/172 (52%), Gaps = 3/172 (1%)

Query: 54  LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
           +I+  L++ F  A EG++S    +LV   T +++ARE +L   +R+     K       S
Sbjct: 3   VIANALYHRFPRADEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRRES 62

Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGV 171
           I AD VE+LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +   
Sbjct: 63  ILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLP 122

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222
            P Y V    G  HD  FT+  ++SGL+ P  G   S+R AEQ AA + LK+
Sbjct: 123 LPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQALKK 174


>gi|296171390|ref|ZP_06852723.1| ribonuclease III [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295894165|gb|EFG73924.1| ribonuclease III [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 237

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/181 (35%), Positives = 93/181 (51%), Gaps = 8/181 (4%)

Query: 22  LLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL  ALTH S +  H    + ERLEFLGD +LGL I+  L++      EG+L+    S+V
Sbjct: 19  LLSLALTHRSYAYEHGGLPTNERLEFLGDAVLGLTITDELYHRHPDRSEGDLAKLRASVV 78

Query: 80  SAETCSQVARELD---LASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           + +  + VAR+L    L   + +         +  +SI AD +ESL+ A+YL  GI+ A 
Sbjct: 79  NTQALADVARKLSADGLGVHLFLGRGEANTGGADKSSILADGMESLLGAIYLQHGIDTAR 138

Query: 137 TFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
             + + +     A  +     D KT LQE   A+    P Y VT  +GPDHD  FT VV 
Sbjct: 139 EVILRLFGGLLDAAPTLGAGLDWKTSLQELTAARGMGAPSYVVT-STGPDHDKEFTAVVV 197

Query: 195 I 195
           +
Sbjct: 198 V 198


>gi|309810296|ref|ZP_07704134.1| ribonuclease III [Dermacoccus sp. Ellin185]
 gi|308435724|gb|EFP59518.1| ribonuclease III [Dermacoccus sp. Ellin185]
          Length = 272

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/204 (32%), Positives = 100/204 (49%), Gaps = 9/204 (4%)

Query: 19  NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           + SLL +ALTH S ++        ER EFLGD +LGL+++  L+     A EG L+ +  
Sbjct: 34  DESLLRRALTHRSFAYENGGIPHNERQEFLGDAVLGLVVTETLYTDQPDAPEGHLAKQRA 93

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE--- 133
           ++V++   ++VAR L+L  ++ +             SI AD  E++I  ++L GGIE   
Sbjct: 94  AVVNSRALAEVARGLELGEYLLLGRGELATGGRDKDSILADTTEAVIGTVFLSGGIEAGR 153

Query: 134 -VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
            +    +D    + +        D KT LQE   A     P Y V    GPDHD  FT  
Sbjct: 154 RIVHHLIDPLMNRSSTMGAAL--DWKTSLQEATAAAGLGAPTY-VVEGEGPDHDKVFTAT 210

Query: 193 VEISGLAPAQGMDCSKRAAEQVAA 216
           V + G     G   +K++AE +AA
Sbjct: 211 VLVDGRTLGAGTGRNKKSAEMIAA 234


>gi|198414531|ref|XP_002121902.1| PREDICTED: similar to ribonuclease III, nuclear, partial [Ciona
            intestinalis]
          Length = 1224

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 68/233 (29%), Positives = 115/233 (49%), Gaps = 19/233 (8%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALT----HSSI-SHSYQESYERLEFLGDRILGLLISTLL 59
            + +  E  IG  F +  LL KA T    H +I +H + +   RLEFLGD +  L+ S  L
Sbjct: 962  KLTKFEDSIGVKFNHIRLLAKAFTWRNVHENILTHGHNQ---RLEFLGDSVCNLVASAYL 1018

Query: 60   FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI--RVSSDLRKDVCSFMTSIQAD 117
            F  + +  EG L++   ++V+  T S VA EL +  ++   + +D  + V  +     AD
Sbjct: 1019 FKLYPTHHEGHLTLLRATVVNGRTQSLVATELGMPEYVICTLDNDSTERVPEWREKNLAD 1078

Query: 118  VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWA-----HAKF 169
            ++E+ +AAL++D G++   TF+   +  R LK     +   D K+ LQ+         K 
Sbjct: 1079 LLEAFVAALFIDKGLKYVKTFMKICFFPR-LKEFILTQEWNDPKSCLQQCCLTLRQEGKE 1137

Query: 170  GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
               P Y+++ ++GP H  ++ V V   G    +G   S + AE+ AA   L +
Sbjct: 1138 PQLPTYEISHQTGPSHSRKYVVTVHFKGEEIGKGTGESIQRAERNAARTALNQ 1190



 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 55/208 (26%), Positives = 81/208 (38%), Gaps = 64/208 (30%)

Query: 4   LRY----STLEKRIGYAFANRSLLEKALTH------------------------------ 29
           LRY     TLEK+IGY F  R  L  A+ H                              
Sbjct: 726 LRYHLCLRTLEKKIGYEFKERKWLSHAMNHPSCQMNFGLNPDHVRNTLSNCGLRLPRYGD 785

Query: 30  SSISHSYQ-------------------------ESYERLEFLGDRILGLLISTLLFNHFD 64
           SSI + Y                          E  ERLEFLGD ++G   S  LF  F 
Sbjct: 786 SSIHYKYTRKRGITTLIRIMARLGQQRPVLSPIEHNERLEFLGDAVVGYFTSVHLFLLFP 845

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESL 122
              EG L+     LV+ +  + +A  L L  F+  +     D+C  + +    A+  E+L
Sbjct: 846 DLSEGALTTFRTVLVNNQHLALLAERLQLDEFMLYAHG--PDLCRKADLRHAMANCFEAL 903

Query: 123 IAALYLDGGIEVAGTFVDKY-WKQRALK 149
           + A+Y++ G+E A     ++ W+  AL+
Sbjct: 904 MGAIYMEAGLERAQRLFGEFLWETEALQ 931


>gi|299136236|ref|ZP_07029420.1| ribonuclease III [Acidobacterium sp. MP5ACTX8]
 gi|298602360|gb|EFI58514.1| ribonuclease III [Acidobacterium sp. MP5ACTX8]
          Length = 289

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 120/251 (47%), Gaps = 47/251 (18%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESY------------------------ERLE 44
           L++ +G+ F    LL  ALTH S  H+Y+  +                        E+LE
Sbjct: 19  LQRLLGHRFTRPELLALALTHRS--HTYEARHGVPTVILPAHPDQRDQRNPPGTDNEQLE 76

Query: 45  FLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR 104
           FLGD ILGL+++  L+  F  + EGEL+   + LVS    ++V   L+L   + +     
Sbjct: 77  FLGDSILGLVVTEALYREFPQSSEGELTRLRSILVSRARMAEVGVALELGEQLFLGKSAD 136

Query: 105 KDVCSFMTSIQADVVESLIAALYLDG---GIEVAGTFVDKYWKQ------RALKSGK--- 152
           ++      ++ A+ VE++IAA+YLD    G++     V++Y  +      RA  +G+   
Sbjct: 137 QNGGRKKPALLANAVEAIIAAVYLDAGAKGLKAVRAIVERYVLEPDLDTMRAALAGEEGR 196

Query: 153 -FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG------LAPAQGMD 205
              RD KT LQE   A       Y  T ++GP H  RF+V  ++ G      LA A+G  
Sbjct: 197 GALRDHKTVLQERVQASGLGRLRYVDTDQTGPAHQRRFSVEAQLEGEAGTRTLAAAEG-- 254

Query: 206 CSKRAAEQVAA 216
            +K+ A+Q AA
Sbjct: 255 SNKKEAQQRAA 265


>gi|307448395|pdb|3O2R|A Chain A, Structural Flexibility In Region Involved In Dimer
           Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc)
           From Campylobacter Jejuni
 gi|307448397|pdb|3O2R|C Chain C, Structural Flexibility In Region Involved In Dimer
           Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc)
           From Campylobacter Jejuni
          Length = 170

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/141 (36%), Positives = 81/141 (57%), Gaps = 6/141 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE+ + Y F +++LL  ALTH S   SY    ERLEFLGD +L L++   LF+ F    E
Sbjct: 31  LEQSLTYEFKDKNLLIHALTHKSFKKSYNN--ERLEFLGDAVLDLVVGEYLFHKFAKDAE 88

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    +LV+ ++ +++A  L+L  FI +S     +      SI +D +E++I A++L
Sbjct: 89  GDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALEAIIGAIHL 148

Query: 129 DGGIEVAGT----FVDKYWKQ 145
           + G E A T     ++K + Q
Sbjct: 149 EAGFEFAKTIALRLIEKNFPQ 169


>gi|317474593|ref|ZP_07933867.1| ribonuclease III [Bacteroides eggerthii 1_2_48FAA]
 gi|316909274|gb|EFV30954.1| ribonuclease III [Bacteroides eggerthii 1_2_48FAA]
          Length = 306

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 111/225 (49%), Gaps = 13/225 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y    K +G+   N    ++AL H S S   ++    + ERLEFLGD IL  ++  +++ 
Sbjct: 37  YFCFYKILGFFPRNIRFYQQALLHKSTSVRSEKGRPLNNERLEFLGDAILDAIVGDIVYK 96

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF+  +EG L+   + +V  ET +++A E+ L   ++ S+       S  + +  +  E+
Sbjct: 97  HFEGRREGFLTNTRSKIVQRETLNKLAVEIGLDKLVKYST----RSSSHNSYMYGNAFEA 152

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKV 177
           LI A+YLD G E    F+++   +  +   K  R   + K++L EW+   K  V+ E   
Sbjct: 153 LIGAIYLDQGYERCKQFMEEKILKNYIDLDKMSRKEVNFKSKLIEWSQKNKMEVSFELIE 212

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            F    D++P F   V I  L    G   SK+ ++Q AA   LK+
Sbjct: 213 QFLD-RDYNPMFHTEVLIENLPAGTGTGYSKKESQQNAAQMALKK 256


>gi|119025240|ref|YP_909085.1| ribonuclease III [Bifidobacterium adolescentis ATCC 15703]
 gi|118764824|dbj|BAF39003.1| ribonuclease III [Bifidobacterium adolescentis ATCC 15703]
          Length = 262

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/207 (34%), Positives = 106/207 (51%), Gaps = 13/207 (6%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL +ALTH S SH ++  ++YERLEFLGD +L L+ +  L+       EG+L+      V
Sbjct: 18  LLVEALTHRSFSHEHEGAKNYERLEFLGDAVLELVSTETLYKVHPDMNEGQLAKMRAKAV 77

Query: 80  SAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE----V 134
           S E+ S++ARE L +  +I +     +   +  +SI  D+VESLI A ++  GI+    V
Sbjct: 78  SEESLSKIAREKLHVGPYILLGHGEAEQGGADKSSILCDIVESLIGATFIQHGIDEARRV 137

Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VV 192
               VD    + A +      D KT L   AH      P Y+ +  +GP++   FT   +
Sbjct: 138 VHHLVDDTLAEVATEGPAL--DWKTSLTVKAHEMGLPDPHYQTSV-AGPEYALEFTARAI 194

Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEV 219
           +   G     G   SKR A Q+AAAE+
Sbjct: 195 LGDGGEVIGVGTGSSKRKA-QLAAAEM 220


>gi|229491421|ref|ZP_04385245.1| ribonuclease III [Rhodococcus erythropolis SK121]
 gi|229321706|gb|EEN87503.1| ribonuclease III [Rhodococcus erythropolis SK121]
          Length = 257

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/211 (34%), Positives = 102/211 (48%), Gaps = 14/211 (6%)

Query: 21  SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            LL  ALTH S ++      + ERLEFLGD +LG+ ++  L+       EG+L+    S+
Sbjct: 30  GLLTLALTHRSYAYENGGLPTNERLEFLGDSVLGVTVTENLYLSHPDKSEGDLAKIRASV 89

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSF---MTSIQADVVESLIAALYLDGGIEVA 135
           V+    ++VAR L            + +  +      SI AD +ES++ A++L  GIE A
Sbjct: 90  VNMHALAEVARTLGEGGLGAHLLLGKGEEMTGGRDKPSILADGMESILGAIHLQHGIETA 149

Query: 136 -----GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
                  F D   +   L +G    D KT LQE         P Y++T  +GPDHD  FT
Sbjct: 150 RRVVLDLFDDLLTRAPLLGAG---LDWKTSLQELTAEHGAGVPVYEIT-ATGPDHDKEFT 205

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             V ISG     G+  SK+ AEQ AA+   K
Sbjct: 206 ATVLISGKPLGVGVGRSKKEAEQKAASSAWK 236


>gi|303236120|ref|ZP_07322722.1| ribonuclease III [Prevotella disiens FB035-09AN]
 gi|302483702|gb|EFL46695.1| ribonuclease III [Prevotella disiens FB035-09AN]
          Length = 293

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 108/218 (49%), Gaps = 13/218 (5%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           IG    N    + AL H S++   ++    + ERLEFLGD IL  ++  ++F HF   +E
Sbjct: 27  IGILPHNLEYYKTALLHKSVARRNEKGRPINNERLEFLGDAILDAIVGDIVFQHFSGKRE 86

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G L+   + +V  +T +++A+++ +   I   S+ R    S  + +  +  E+L+ ALYL
Sbjct: 87  GFLTNTRSKIVQRDTLNRLAKDMGITRLI--LSNGRS--ASHNSYLGGNAFEALVGALYL 142

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYK-VTFRSGPD 184
           D G      F+ K      +   K      + K++L EW   K  V  E+K + F    D
Sbjct: 143 DHGYNACKKFMQKQILGELINIDKVAYKEVNFKSKLLEWTQ-KHKVEIEFKPLNFGKDSD 201

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            +P F+  V +  +A  +G   SK+ ++Q AA E ++R
Sbjct: 202 GNPTFSFQVILENIACGEGKGYSKKESQQEAAKETMQR 239


>gi|111023481|ref|YP_706453.1| ribonuclease III [Rhodococcus jostii RHA1]
 gi|110823011|gb|ABG98295.1| ribonuclease III [Rhodococcus jostii RHA1]
          Length = 252

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/205 (34%), Positives = 104/205 (50%), Gaps = 10/205 (4%)

Query: 21  SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           SLL  ALTH S ++      + ERLEFLGD +LG+ ++  L+       EG+L+    S+
Sbjct: 30  SLLTLALTHRSYAYENGGLPTNERLEFLGDSVLGVTVTEKLYLAHPDKSEGDLAKIRASI 89

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSF---MTSIQADVVESLIAALYLDGGIEVA 135
           V+    ++VAR L            + +  +      SI AD +ES++ A++L+ GI+ A
Sbjct: 90  VNMHALAEVARTLGEGGLGAHLLLGKGEEMTGGRDKPSILADGMESILGAIHLEHGIDTA 149

Query: 136 GTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
              V   +    QRA + G    D KT LQE    +    P Y++T  +GPDHD  FT  
Sbjct: 150 RRVVLDLFSDLLQRAPRLGAG-LDWKTSLQELTAERGVGVPAYEITA-TGPDHDKEFTAT 207

Query: 193 VEISGLAPAQGMDCSKRAAEQVAAA 217
           V + G     G+  SK+ AEQ AA+
Sbjct: 208 VIVGGKPLGVGIGRSKKEAEQKAAS 232


>gi|332878384|ref|ZP_08446107.1| ribonuclease III [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332683649|gb|EGJ56523.1| ribonuclease III [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 262

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 105/221 (47%), Gaps = 19/221 (8%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHF 63
           Y+ ++  +GYA  N S   +A TH S  +  + ++SYERLEFLGD ILG +I+  +F + 
Sbjct: 33  YNKMKDLLGYAPKNLSFYSEAFTHPSYQYQKATRKSYERLEFLGDAILGAVIADYIFTNA 92

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG L+   + +V     +Q+  EL L SF+R     ++       +I  ++ E+LI
Sbjct: 93  PEQDEGYLTKMRSKIVERRNLNQLGEELQLLSFLRTKLTPKQ----LGNNITGNLFEALI 148

Query: 124 AALYLDGGIEVAGTFVDK-----YWKQRALKSGKFRRDAKTELQEWAHAK---FGVTPEY 175
            A+YLD G +    F+++     Y   + L+        K+ L EW       F    E 
Sbjct: 149 GAIYLDKGYKTCFKFIERKLILPYINIKNLEEKVI--SHKSLLIEWCQKHKRDFSFEAEE 206

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            V  RS   +   F   V + G +  +    SK+ AE+ AA
Sbjct: 207 DVEDRSETKY---FVAKVYVEGFSVTRARATSKKRAEESAA 244


>gi|154486628|ref|ZP_02028035.1| hypothetical protein BIFADO_00445 [Bifidobacterium adolescentis
           L2-32]
 gi|154084491|gb|EDN83536.1| hypothetical protein BIFADO_00445 [Bifidobacterium adolescentis
           L2-32]
          Length = 298

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/207 (34%), Positives = 106/207 (51%), Gaps = 13/207 (6%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL +ALTH S SH ++  ++YERLEFLGD +L L+ +  L+       EG+L+      V
Sbjct: 54  LLVEALTHRSFSHEHEGAKNYERLEFLGDAVLELVSTETLYKVHPDMNEGQLAKMRAKAV 113

Query: 80  SAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE----V 134
           S E+ S++ARE L +  +I +     +   +  +SI  D+VESLI A ++  GI+    V
Sbjct: 114 SEESLSKIAREKLHVGPYILLGHGEAEQGGADKSSILCDIVESLIGATFIQHGIDEARRV 173

Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VV 192
               VD    + A +      D KT L   AH      P Y+ +  +GP++   FT   +
Sbjct: 174 VHHLVDDTLAEVATEGPAL--DWKTSLTVKAHEMGLPDPHYQTSV-AGPEYALEFTARAI 230

Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEV 219
           +   G     G   SKR A Q+AAAE+
Sbjct: 231 LGDGGEVIGVGTGSSKRKA-QLAAAEM 256


>gi|116495089|ref|YP_806823.1| ribonuclease III [Lactobacillus casei ATCC 334]
 gi|191638593|ref|YP_001987759.1| ribonuclease III [Lactobacillus casei BL23]
 gi|227534896|ref|ZP_03964945.1| ribonuclease III [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|116105239|gb|ABJ70381.1| RNAse III [Lactobacillus casei ATCC 334]
 gi|190712895|emb|CAQ66901.1| Ribonuclease 3 (Ribonuclease III) (RNase III) [Lactobacillus casei
           BL23]
 gi|227187652|gb|EEI67719.1| ribonuclease III [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
          Length = 231

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 96/204 (47%), Gaps = 7/204 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNH 62
           S L +R G  F + SLL++A THSS  + ++E      ERLEFLGD +L L +S  L+  
Sbjct: 8   SELRQRYGIEFHDLSLLDEAFTHSSYVNEHKELGLKDNERLEFLGDAVLELTVSDYLYRK 67

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG+L+    + V     S  ++E     +I++     K       ++  D+ E+ 
Sbjct: 68  FPDKPEGDLTRIRAAAVQTAAFSAFSKEAHFDRYIKLGKGEEKAGARKRLTLLEDLFEAF 127

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFR 180
             ALYLD G +    F  +    + + +G+F   +D KT LQE       V   Y +   
Sbjct: 128 NGALYLDQGRDANIRFAQQIIFPK-IDAGEFSADQDHKTALQEVLQQNGDVAIVYHLLDE 186

Query: 181 SGPDHDPRFTVVVEISGLAPAQGM 204
            GP H+ +F V VE+ G     G 
Sbjct: 187 QGPAHERQFHVDVEVDGRVLGTGF 210


>gi|193215269|ref|YP_001996468.1| ribonuclease III [Chloroherpeton thalassium ATCC 35110]
 gi|193088746|gb|ACF14021.1| Ribonuclease III [Chloroherpeton thalassium ATCC 35110]
          Length = 269

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/213 (31%), Positives = 98/213 (46%), Gaps = 16/213 (7%)

Query: 9   LEKRIGYAFANRSLLEKALTHSS------ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           +E   G+  +N    E ALTH S       S     S ERLEFLGD +L L+++  L+  
Sbjct: 43  IESLTGFPISNVIHYETALTHRSAIDLNVYSKKKFVSNERLEFLGDAVLDLVVAECLYTR 102

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG+L+   + LV+A T +  AR++ L S + VS            +  AD  E+L
Sbjct: 103 FPDYDEGKLTKLRSQLVNARTLASFARKIHLGSLLIVSEAAEAIGVRDSETTLADAFEAL 162

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR------RDAKTELQEWAHAKFGVTPEYK 176
           + A+YLD        F++K    + L+   FR       + K+ L E+A A     P Y 
Sbjct: 163 VGAIYLDSDYLQTKRFLEK----KILEGIDFRELSSTDNNFKSVLLEYAQAHHLEIPTYT 218

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           V    GP H   FTV V I      +G+  SK+
Sbjct: 219 VIDEEGPSHKKVFTVAVYIGDEMLGKGVGRSKK 251


>gi|108798917|ref|YP_639114.1| ribonuclease III [Mycobacterium sp. MCS]
 gi|119868032|ref|YP_937984.1| ribonuclease III [Mycobacterium sp. KMS]
 gi|126434517|ref|YP_001070208.1| ribonuclease III [Mycobacterium sp. JLS]
 gi|108769336|gb|ABG08058.1| RNAse III [Mycobacterium sp. MCS]
 gi|119694121|gb|ABL91194.1| RNAse III [Mycobacterium sp. KMS]
 gi|126234317|gb|ABN97717.1| RNAse III [Mycobacterium sp. JLS]
          Length = 234

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/193 (34%), Positives = 97/193 (50%), Gaps = 14/193 (7%)

Query: 22  LLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL  ALTH S S  H    + ERLEFLGD +LGL I+  LF+      EG+L+    S+V
Sbjct: 20  LLTIALTHRSYSYEHGGLPTNERLEFLGDSVLGLTITEELFHRHPDRSEGDLAKLRASIV 79

Query: 80  SAETCSQVARELD---LASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           +    + V R+L    L S++ +         +  +SI AD VESL+ A+Y+  G+ V  
Sbjct: 80  NTGALADVGRKLSDDGLGSYLLLGKGEESSGGADKSSILADGVESLLGAIYVQHGLTVTR 139

Query: 137 TFVDKYW-----KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
             + + +         L +G    D K+ LQE   A+    P Y VT  +GPDHD  FT 
Sbjct: 140 EVILRLFAGLLDTAPTLGAG---LDWKSSLQELTAARGLGAPHYVVT-STGPDHDKEFTA 195

Query: 192 VVEISGLAPAQGM 204
            V ++ +   +G+
Sbjct: 196 TVLVTDIEYGRGV 208


>gi|87117520|gb|ABD20063.1| Rnc [Shigella boydii]
          Length = 178

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 90/172 (52%), Gaps = 3/172 (1%)

Query: 54  LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
           +I+ +L++ F    EG++S    +LV   T +++ARE +L   +R+     K       S
Sbjct: 3   VIANVLYHRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRRES 62

Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGV 171
           I AD VE+LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +   
Sbjct: 63  ILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLP 122

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222
            P Y V    G  HD  FT+  ++SGL+ P  G   S+R AEQ AA + LK+
Sbjct: 123 LPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQALKK 174


>gi|327382635|gb|AEA54111.1| ribonuclease III [Lactobacillus casei LC2W]
 gi|327385829|gb|AEA57303.1| ribonuclease III [Lactobacillus casei BD-II]
          Length = 231

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 96/204 (47%), Gaps = 7/204 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNH 62
           S L +R G  F + SLL++A THSS  + ++E      ERLEFLGD +L L +S  L+  
Sbjct: 8   SELRQRYGIEFHDLSLLDEAFTHSSYVNEHKELGLKDNERLEFLGDAVLELTVSDYLYRK 67

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG+L+    + V     S  ++E     +I++     K       ++  D+ E+ 
Sbjct: 68  FPDKPEGDLTRIRAAAVQTAAFSAFSKEAHFDRYIKLGKGEEKAGARKRLTLLEDLFEAF 127

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFR 180
             ALYLD G +    F  +    + + +G+F   +D KT LQE       V   Y +   
Sbjct: 128 NGALYLDQGRDANIRFAQQIIFPK-IDAGEFSDDQDHKTALQEVLQQNGDVAIVYHLLDE 186

Query: 181 SGPDHDPRFTVVVEISGLAPAQGM 204
            GP H+ +F V VE+ G     G 
Sbjct: 187 QGPAHERQFHVDVEVDGRVLGTGF 210


>gi|294791394|ref|ZP_06756551.1| ribonuclease III [Scardovia inopinata F0304]
 gi|294457865|gb|EFG26219.1| ribonuclease III [Scardovia inopinata F0304]
          Length = 271

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/200 (33%), Positives = 105/200 (52%), Gaps = 6/200 (3%)

Query: 22  LLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           L  +ALTH S +  H    +YERLEFLGD +L L+I+  L+ +  +  EG++S   + +V
Sbjct: 38  LFVEALTHRSFTNEHPLAHNYERLEFLGDAVLELVITETLYKNHPTYSEGQMSRIRSKVV 97

Query: 80  SAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138
           S E+ S++AR+ L ++ FI +    ++D  ++  SI  DVVESLI A++++ GI+ A   
Sbjct: 98  SEESLSEIARDKLKISQFILLGIGEQRDKGAYKPSILCDVVESLIGAVFIEQGIDKARQV 157

Query: 139 VDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
           +            +     D KT +   AH        Y++   SGP++   FT  + I+
Sbjct: 158 IHHLLDDNLAFYTTEGPALDWKTAIVIKAHKMNLGEVSYRMEM-SGPENHLEFTAYLLIN 216

Query: 197 GLAPAQGMDCSKRAAEQVAA 216
               A G   SKR A+  AA
Sbjct: 217 DQDVAWGRGSSKRKAQLDAA 236


>gi|108804222|ref|YP_644159.1| RNAse III [Rubrobacter xylanophilus DSM 9941]
 gi|108765465|gb|ABG04347.1| RNAse III [Rubrobacter xylanophilus DSM 9941]
          Length = 233

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/205 (33%), Positives = 99/205 (48%), Gaps = 12/205 (5%)

Query: 21  SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
            L ++ALTH S++  Y  S  RLEFLGD IL   ++ L+F+ +    EG+L+     LV 
Sbjct: 27  PLRKRALTHPSVADPYH-SNGRLEFLGDSILNHRVAELVFHSYPELLEGDLTRIRAHLVR 85

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140
               + V R   L   I  S            S+ AD VE++I A YL     V  T +D
Sbjct: 86  KSFLASVGRSEGLEEMIESSV--------INDSVIADTVEAIIGAAYLIDKNLVLRT-ID 136

Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
           + +    + + + R D KT LQE   A+ G+ P Y+V  + GP H P F   V + G   
Sbjct: 137 EIFNPAEVDTDELR-DWKTLLQETLQAE-GLRPTYRVISKQGPPHRPVFISGVSVDGEEV 194

Query: 201 AQGMDCSKRAAEQVAAAEVLKREGI 225
           A G   S + +EQ AA   L+  G+
Sbjct: 195 ATGRGSSIKQSEQAAARAALEILGV 219


>gi|162447098|ref|YP_001620230.1| dsRNA-specific ribonuclease III [Acholeplasma laidlawii PG-8A]
 gi|161985205|gb|ABX80854.1| dsRNA-specific ribonuclease III [Acholeplasma laidlawii PG-8A]
          Length = 219

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/200 (33%), Positives = 100/200 (50%), Gaps = 9/200 (4%)

Query: 25  KALTHSSISHSYQESY-ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83
           +ALTH+S +H  Q  + ERLEFLGD ++ L++ST LF H D + +G L+ R    V  E 
Sbjct: 20  QALTHTSYAHENQTDHNERLEFLGDAVIELMMSTYLFTH-DQSNQGVLTKRRAQAVREEA 78

Query: 84  CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143
               A+++DL S +R+ +  +    S +    AD  E+   ALY+D G +      +K  
Sbjct: 79  LVLYAQKMDLESKMRLGNGEQIAKPSMI----ADAFEAFFGALYMDQGFDKTYEIFNKVV 134

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI-SGLAPAQ 202
               L   +  +D KT+LQE+   +   +  YK     GP H P F   V + + +    
Sbjct: 135 IPH-LNLVEHIKDYKTQLQEFIQLERK-SLSYKTVKVGGPSHRPIFKSEVFLENSIMLGT 192

Query: 203 GMDCSKRAAEQVAAAEVLKR 222
           G   S + AEQ AA E L +
Sbjct: 193 GQGSSTKEAEQNAAKEALSK 212


>gi|83589801|ref|YP_429810.1| ribonuclease III [Moorella thermoacetica ATCC 39073]
 gi|123524697|sp|Q2RJX2|RNC_MOOTA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|83572715|gb|ABC19267.1| RNAse III [Moorella thermoacetica ATCC 39073]
          Length = 233

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 87/167 (52%), Gaps = 5/167 (2%)

Query: 23  LEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
           L+ ALTH + +  H      +RLEFLGD +LGL+++T L+ HF    EG+L+    ++V 
Sbjct: 26  LDLALTHPTYAFEHHLPGDNQRLEFLGDAVLGLVVATYLYQHFPQLPEGDLTRMRAAVVC 85

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140
             +  +VAR L +   +R+             S  AD +E++I ++YL GG E+A  FV 
Sbjct: 86  EASLVKVARRLRVGDLLRLGQGEEHSGGRERPSNLADAMEAIIGSVYLSGGYELARDFVL 145

Query: 141 KYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           + +      L    F  D+K+ LQE+  ++      YK+    GPDH
Sbjct: 146 QIFTPALEILSDTSF-IDSKSALQEFVQSQGTENVVYKILEEWGPDH 191


>gi|71042598|pdb|2A11|A Chain A, Crystal Structure Of Nuclease Domain Of Ribonuclase Iii
           From Mycobacterium Tuberculosis
          Length = 242

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/181 (35%), Positives = 92/181 (50%), Gaps = 8/181 (4%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL  ALTH S ++      + ERLEFLGD +LGL I+  LF+      EG+L+    S+V
Sbjct: 22  LLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVV 81

Query: 80  SAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           + +  + VAR L    L   + +         +  +SI AD +ESL+ A+YL  G+E A 
Sbjct: 82  NTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADGMESLLGAIYLQHGMEKAR 141

Query: 137 TFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
             + + +     A  +     D KT LQE   A+    P Y VT  +GPDHD  FT VV 
Sbjct: 142 EVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYLVT-STGPDHDKEFTAVVV 200

Query: 195 I 195
           +
Sbjct: 201 V 201


>gi|15610062|ref|NP_217441.1| ribonuclease III [Mycobacterium tuberculosis H37Rv]
 gi|15842471|ref|NP_337508.1| ribonuclease III [Mycobacterium tuberculosis CDC1551]
 gi|31794102|ref|NP_856595.1| ribonuclease III [Mycobacterium bovis AF2122/97]
 gi|121638807|ref|YP_979031.1| ribonuclease III [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148662771|ref|YP_001284294.1| ribonuclease III [Mycobacterium tuberculosis H37Ra]
 gi|148824115|ref|YP_001288869.1| ribonuclease III [Mycobacterium tuberculosis F11]
 gi|167969555|ref|ZP_02551832.1| ribonuclease III [Mycobacterium tuberculosis H37Ra]
 gi|215404901|ref|ZP_03417082.1| ribonuclease III [Mycobacterium tuberculosis 02_1987]
 gi|215412768|ref|ZP_03421480.1| ribonuclease III [Mycobacterium tuberculosis 94_M4241A]
 gi|215428370|ref|ZP_03426289.1| ribonuclease III [Mycobacterium tuberculosis T92]
 gi|215431873|ref|ZP_03429792.1| ribonuclease III [Mycobacterium tuberculosis EAS054]
 gi|215447189|ref|ZP_03433941.1| ribonuclease III [Mycobacterium tuberculosis T85]
 gi|218754678|ref|ZP_03533474.1| ribonuclease III [Mycobacterium tuberculosis GM 1503]
 gi|224991299|ref|YP_002645988.1| ribonuclease III [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253797986|ref|YP_003030987.1| ribonuclease III rnc [Mycobacterium tuberculosis KZN 1435]
 gi|254365562|ref|ZP_04981607.1| ribonuclease III rnc (RNase III) [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254551999|ref|ZP_05142446.1| ribonuclease III [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|260187945|ref|ZP_05765419.1| ribonuclease III [Mycobacterium tuberculosis CPHL_A]
 gi|260202061|ref|ZP_05769552.1| ribonuclease III [Mycobacterium tuberculosis T46]
 gi|260206245|ref|ZP_05773736.1| ribonuclease III [Mycobacterium tuberculosis K85]
 gi|289444482|ref|ZP_06434226.1| ribonuclease III [Mycobacterium tuberculosis T46]
 gi|289448592|ref|ZP_06438336.1| ribonuclease III rnc [Mycobacterium tuberculosis CPHL_A]
 gi|289553284|ref|ZP_06442494.1| ribonuclease III rnc [Mycobacterium tuberculosis KZN 605]
 gi|289575632|ref|ZP_06455859.1| ribonuclease III rnc [Mycobacterium tuberculosis K85]
 gi|289746725|ref|ZP_06506103.1| ribonuclease III [Mycobacterium tuberculosis 02_1987]
 gi|289751594|ref|ZP_06510972.1| ribonuclease III rnc [Mycobacterium tuberculosis T92]
 gi|289755039|ref|ZP_06514417.1| ribonuclease III [Mycobacterium tuberculosis EAS054]
 gi|289759048|ref|ZP_06518426.1| ribonuclease III [Mycobacterium tuberculosis T85]
 gi|289763102|ref|ZP_06522480.1| ribonuclease III rnc (RNase III) [Mycobacterium tuberculosis GM
           1503]
 gi|297635545|ref|ZP_06953325.1| ribonuclease III [Mycobacterium tuberculosis KZN 4207]
 gi|297732544|ref|ZP_06961662.1| ribonuclease III [Mycobacterium tuberculosis KZN R506]
 gi|298526395|ref|ZP_07013804.1| ribonuclease III [Mycobacterium tuberculosis 94_M4241A]
 gi|306777216|ref|ZP_07415553.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu001]
 gi|306781126|ref|ZP_07419463.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu002]
 gi|306785762|ref|ZP_07424084.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu003]
 gi|306789802|ref|ZP_07428124.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu004]
 gi|306794615|ref|ZP_07432917.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu005]
 gi|306798860|ref|ZP_07437162.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu006]
 gi|306804705|ref|ZP_07441373.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu008]
 gi|306808897|ref|ZP_07445565.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu007]
 gi|306968996|ref|ZP_07481657.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu009]
 gi|306973333|ref|ZP_07485994.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu010]
 gi|307081039|ref|ZP_07490209.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu011]
 gi|307085639|ref|ZP_07494752.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu012]
 gi|313659876|ref|ZP_07816756.1| ribonuclease III [Mycobacterium tuberculosis KZN V2475]
 gi|54039242|sp|P66667|RNC_MYCBO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|54041614|sp|P66666|RNC_MYCTU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|1405961|emb|CAA98974.1| PROBABLE RIBONUCLEASE III RNC (RNASE III) [Mycobacterium
           tuberculosis H37Rv]
 gi|13882776|gb|AAK47322.1| ribonuclease III [Mycobacterium tuberculosis CDC1551]
 gi|31619697|emb|CAD96637.1| PROBABLE RIBONUCLEASE III RNC (RNASE III) [Mycobacterium bovis
           AF2122/97]
 gi|121494455|emb|CAL72936.1| Probable ribonuclease III rnc (rnase III) [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|134151075|gb|EBA43120.1| ribonuclease III rnc (RNase III) [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148506923|gb|ABQ74732.1| ribonuclease III [Mycobacterium tuberculosis H37Ra]
 gi|148722642|gb|ABR07267.1| ribonuclease III rnc (RNase III) [Mycobacterium tuberculosis F11]
 gi|224774414|dbj|BAH27220.1| ribonuclease III [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253319489|gb|ACT24092.1| ribonuclease III rnc [Mycobacterium tuberculosis KZN 1435]
 gi|289417401|gb|EFD14641.1| ribonuclease III [Mycobacterium tuberculosis T46]
 gi|289421550|gb|EFD18751.1| ribonuclease III rnc [Mycobacterium tuberculosis CPHL_A]
 gi|289437916|gb|EFD20409.1| ribonuclease III rnc [Mycobacterium tuberculosis KZN 605]
 gi|289540063|gb|EFD44641.1| ribonuclease III rnc [Mycobacterium tuberculosis K85]
 gi|289687253|gb|EFD54741.1| ribonuclease III [Mycobacterium tuberculosis 02_1987]
 gi|289692181|gb|EFD59610.1| ribonuclease III rnc [Mycobacterium tuberculosis T92]
 gi|289695626|gb|EFD63055.1| ribonuclease III [Mycobacterium tuberculosis EAS054]
 gi|289710608|gb|EFD74624.1| ribonuclease III rnc (RNase III) [Mycobacterium tuberculosis GM
           1503]
 gi|289714612|gb|EFD78624.1| ribonuclease III [Mycobacterium tuberculosis T85]
 gi|298496189|gb|EFI31483.1| ribonuclease III [Mycobacterium tuberculosis 94_M4241A]
 gi|308214363|gb|EFO73762.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu001]
 gi|308326021|gb|EFP14872.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu002]
 gi|308329542|gb|EFP18393.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu003]
 gi|308333690|gb|EFP22541.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu004]
 gi|308337033|gb|EFP25884.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu005]
 gi|308340847|gb|EFP29698.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu006]
 gi|308344741|gb|EFP33592.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu007]
 gi|308348661|gb|EFP37512.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu008]
 gi|308353417|gb|EFP42268.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu009]
 gi|308357236|gb|EFP46087.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu010]
 gi|308361245|gb|EFP50096.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu011]
 gi|308364828|gb|EFP53679.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu012]
 gi|323718456|gb|EGB27628.1| ribonuclease III rnc [Mycobacterium tuberculosis CDC1551A]
 gi|326904540|gb|EGE51473.1| ribonuclease III rnc [Mycobacterium tuberculosis W-148]
 gi|328457760|gb|AEB03183.1| ribonuclease III rnc [Mycobacterium tuberculosis KZN 4207]
          Length = 240

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/181 (35%), Positives = 92/181 (50%), Gaps = 8/181 (4%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL  ALTH S ++      + ERLEFLGD +LGL I+  LF+      EG+L+    S+V
Sbjct: 20  LLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVV 79

Query: 80  SAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           + +  + VAR L    L   + +         +  +SI AD +ESL+ A+YL  G+E A 
Sbjct: 80  NTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADGMESLLGAIYLQHGMEKAR 139

Query: 137 TFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
             + + +     A  +     D KT LQE   A+    P Y VT  +GPDHD  FT VV 
Sbjct: 140 EVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYLVT-STGPDHDKEFTAVVV 198

Query: 195 I 195
           +
Sbjct: 199 V 199


>gi|116671047|ref|YP_831980.1| ribonuclease III [Arthrobacter sp. FB24]
 gi|116611156|gb|ABK03880.1| RNAse III [Arthrobacter sp. FB24]
          Length = 240

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 102/210 (48%), Gaps = 16/210 (7%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           L KR+G +  +   L  ALTH S  ++Y+     + ERLEFLGD ILG  ++  L+    
Sbjct: 8   LLKRLGVSI-DAGTLRLALTHRS--YAYENGGIPTNERLEFLGDSILGFSVTDALYRDNP 64

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EG+L+ R +++VS    + + R L +  +I +    +        SI AD +E+LI 
Sbjct: 65  ALPEGDLAKRRSAVVSTRALAGIGRSLGIGEYIYLGQGEKLTDGKNKASILADTMEALIG 124

Query: 125 ALYLDGGIEVAGTFVDK-----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           A Y+   IE A   V +          AL +G    D KT +QE A ++   +  Y V  
Sbjct: 125 ATYVSNDIETARQLVMRLIGPLLQDAAALGAGT---DWKTSIQELAASRQLGSIYYAVEG 181

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            SGPDH   F  V+ I G    QG   SK+
Sbjct: 182 -SGPDHARTFVAVLRIGGTDYGQGAGRSKK 210


>gi|332291744|ref|YP_004430353.1| Ribonuclease III [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169830|gb|AEE19085.1| Ribonuclease III [Krokinobacter diaphorus 4H-3-7-5]
          Length = 245

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 104/211 (49%), Gaps = 12/211 (5%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           IG+        EKA TH S+     +    +YERLEFLGD +LG +I+  LFN      E
Sbjct: 26  IGFKPKEIKYYEKAFTHRSLGLKKADGNPLNYERLEFLGDAMLGSVIAAHLFNAVQGGNE 85

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G L+   + +VS +  +++ R+L+L  ++R S  L     +F  +I  ++ E+L+ A+YL
Sbjct: 86  GYLTKMRSKVVSRKHLNELGRDLNLVRYVRASIPLD----NFGVNIHGNLFEALVGAIYL 141

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           D G +    F+ K   +  +   K        K+ L EW   K   T +++    +G D 
Sbjct: 142 DRGYKYCEKFIAKRVIEPYVDIEKLEGRIISYKSVLIEWCQ-KEKRTFKFETFEDTGQDT 200

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
              F V + I G   A+    SK+ AE++A+
Sbjct: 201 VKHFGVKLFIDGKVVAKARATSKKKAEEIAS 231


>gi|254822109|ref|ZP_05227110.1| ribonuclease III [Mycobacterium intracellulare ATCC 13950]
          Length = 235

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/182 (35%), Positives = 94/182 (51%), Gaps = 8/182 (4%)

Query: 22  LLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL  ALTH S +  H    + ERLEFLGD +LGL I+  L++      EG+L+    S+V
Sbjct: 19  LLSLALTHRSYAYEHGGLPTNERLEFLGDAVLGLTITDELYHRHPDRSEGDLAKLRASVV 78

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSF---MTSIQADVVESLIAALYLDGGIEVAG 136
           + +  + V R+L            R +  +     +SI AD +ESL+ A+YL+ GI+VA 
Sbjct: 79  NTQALADVGRKLCEGGLGVHLLLGRGEANTGGADKSSILADGMESLLGAIYLEHGIDVAR 138

Query: 137 TFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
             + + +     A  +     D KT LQE   A+    P Y VT  +GPDHD  FT VV 
Sbjct: 139 EVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARSMGAPSYVVT-STGPDHDKEFTAVVV 197

Query: 195 IS 196
           ++
Sbjct: 198 VA 199


>gi|90101612|sp|Q8A2E8|RNC_BACTN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
          Length = 311

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 109/220 (49%), Gaps = 17/220 (7%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +G+   N  + E+AL H S +   ++    + ERLEFLGD IL  ++  +++  F+  +E
Sbjct: 27  LGFYPHNIQIYEQALLHKSSAVRSEKGRPLNNERLEFLGDAILDAIVGDIVYKRFEGKRE 86

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G L+   + +V  ET +++A E+ L   I+ S+       S  + +  +  E+ I A+YL
Sbjct: 87  GFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAFEAFIGAIYL 142

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKVTFRSGPD 184
           D G E    F+++    R +   K  R   + K++L EW+   K  V+ E    F    D
Sbjct: 143 DQGYERCKQFMEQRIINRYIDLDKISRKEVNFKSKLIEWSQKNKMEVSFELIEQFL---D 199

Query: 185 HD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           HD  P F   V I GL    G   SK+ ++Q AA   +K+
Sbjct: 200 HDSNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 239


>gi|317129239|ref|YP_004095521.1| ribonuclease III [Bacillus cellulosilyticus DSM 2522]
 gi|315474187|gb|ADU30790.1| ribonuclease III [Bacillus cellulosilyticus DSM 2522]
          Length = 253

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 103/212 (48%), Gaps = 11/212 (5%)

Query: 19  NRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
           N  +  +A THSS  + ++    +  ERLEFLGD +L L IS  LF ++ +  EGE++  
Sbjct: 42  NVDIYIQAFTHSSYVNEHRIRPHDDNERLEFLGDAVLELAISQYLFKNYANMSEGEMTKL 101

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
             ++V   + +++A EL     + +             ++ ADV ES + ALYLD G++ 
Sbjct: 102 RAAIVCEPSLAKIADELKFGERVLLGKGEEMTGGRKRPALLADVFESFVGALYLDLGMDA 161

Query: 135 AGTF--VDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
              F  V+ Y K   +  G F    D K++LQE    +     +YK+    GP H   F 
Sbjct: 162 VYDFLKVNVYPK---IADGAFSDMMDYKSQLQELVQREGQGQIQYKIVQERGPAHAREFV 218

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             V +       G   SK+ AEQ+AA + L++
Sbjct: 219 SEVWLENKLLGIGAGRSKKEAEQMAAQKALEK 250


>gi|254431519|ref|ZP_05045222.1| ribonuclease III [Cyanobium sp. PCC 7001]
 gi|197625972|gb|EDY38531.1| ribonuclease III [Cyanobium sp. PCC 7001]
          Length = 245

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/204 (32%), Positives = 102/204 (50%), Gaps = 9/204 (4%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           +E+ALTH+S     + ++ERLEFLGD +L L  S  L  H      G  S   + LVS  
Sbjct: 36  IEEALTHTSARQ--RGNHERLEFLGDAVLRLAASEYLHRHHPQLGVGSQSALRSQLVSDR 93

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG--IEVAGTFVD 140
             +++A    L +  R+    R D     T ++A++ E+LI A+Y   G  +E   T++ 
Sbjct: 94  WLAELADSCGLETVWRIGPMARGDRAGIAT-VRAELCEALIGAVYRCWGDSLEPVLTWLT 152

Query: 141 KYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEI-S 196
            +W+Q  + L +   R + K+ LQEW   +    P Y    RS    DP RF+  + + +
Sbjct: 153 PHWQQASQELLADPDRHNWKSALQEWTQGQGLGLPSYSCEERSTLHADPRRFSCRLTLGA 212

Query: 197 GLAPAQGMDCSKRAAEQVAAAEVL 220
           G     G   S+RAAEQ AA + L
Sbjct: 213 GNESWDGWGPSRRAAEQDAARQAL 236


>gi|317506412|ref|ZP_07964217.1| ribonuclease III [Segniliparus rugosus ATCC BAA-974]
 gi|316255292|gb|EFV14557.1| ribonuclease III [Segniliparus rugosus ATCC BAA-974]
          Length = 347

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/204 (33%), Positives = 105/204 (51%), Gaps = 8/204 (3%)

Query: 21  SLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           SLL  ALTH S ++ + E  + ERLEFLGD +LGL+I+  L+      +EGEL+    ++
Sbjct: 127 SLLTLALTHRSWANEHGEVPTNERLEFLGDTVLGLVITEQLYVTHPDKEEGELAKLRANI 186

Query: 79  VSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
           VS  + +++AR L    L  ++ + +   +       SI AD +E+L+ A+++  GIE A
Sbjct: 187 VSTISLAEIARRLGKGGLGEYLYLGNGEMRTGGKNKDSILADGLEALLGAVHIQYGIEKA 246

Query: 136 GTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
              V         ++ +     D KT LQE   A+ G+ P       +GPDH+  FT VV
Sbjct: 247 REVVLHLCAPLLARAARLGAGLDWKTSLQELC-ARRGLRPPVYEVAEAGPDHEKLFTAVV 305

Query: 194 EISGLAPAQGMDCSKRAAEQVAAA 217
            I   +   G   +K+ AE  AA 
Sbjct: 306 LIEEKSLGTGSGRTKKEAEMKAAG 329


>gi|29348766|ref|NP_812269.1| ribonuclease III [Bacteroides thetaiotaomicron VPI-5482]
 gi|253568891|ref|ZP_04846301.1| ribonuclease III [Bacteroides sp. 1_1_6]
 gi|29340672|gb|AAO78463.1| ribonuclease III [Bacteroides thetaiotaomicron VPI-5482]
 gi|251840910|gb|EES68991.1| ribonuclease III [Bacteroides sp. 1_1_6]
          Length = 324

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 109/220 (49%), Gaps = 17/220 (7%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +G+   N  + E+AL H S +   ++    + ERLEFLGD IL  ++  +++  F+  +E
Sbjct: 40  LGFYPHNIQIYEQALLHKSSAVRSEKGRPLNNERLEFLGDAILDAIVGDIVYKRFEGKRE 99

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G L+   + +V  ET +++A E+ L   I+ S+       S  + +  +  E+ I A+YL
Sbjct: 100 GFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAFEAFIGAIYL 155

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKVTFRSGPD 184
           D G E    F+++    R +   K  R   + K++L EW+   K  V+ E    F    D
Sbjct: 156 DQGYERCKQFMEQRIINRYIDLDKISRKEVNFKSKLIEWSQKNKMEVSFELIEQFL---D 212

Query: 185 HD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           HD  P F   V I GL    G   SK+ ++Q AA   +K+
Sbjct: 213 HDSNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 252


>gi|289550987|ref|YP_003471891.1| Ribonuclease III [Staphylococcus lugdunensis HKU09-01]
 gi|315658482|ref|ZP_07911354.1| ribonuclease III [Staphylococcus lugdunensis M23590]
 gi|289180519|gb|ADC87764.1| Ribonuclease III [Staphylococcus lugdunensis HKU09-01]
 gi|315496811|gb|EFU85134.1| ribonuclease III [Staphylococcus lugdunensis M23590]
          Length = 243

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 100/220 (45%), Gaps = 11/220 (5%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           R+      +G  F N  L ++A +HSS  + +     E  ERLEFLGD +L + +S  LF
Sbjct: 16  RFEQKMNELGIHFDNIKLYQQAFSHSSFINDFNMNRLEHNERLEFLGDAVLEVTVSRYLF 75

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           +   +  EG L+    ++V   +    A ++ L   I +     K       S+ +D  E
Sbjct: 76  DKHPNLPEGNLTKMRATIVCEPSLVIFANKIQLNQLILLGKGEEKTGGRTRPSLISDAFE 135

Query: 121 SLIAALYLDGGIEVAGTFVDK----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           + + ALYLD G+     F +K    Y +   L       D KT+ QE+ H++      Y+
Sbjct: 136 AFVGALYLDQGLGAVWHFAEKVIFPYVEDDELIG---VVDFKTQFQEFVHSQNKGDVMYR 192

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           +    GP H   FT  V +   A A G   +K+ +EQ AA
Sbjct: 193 LVKEEGPAHHRLFTSEVILEQQAIAHGQGKTKKESEQKAA 232


>gi|320528410|ref|ZP_08029572.1| ribonuclease III [Solobacterium moorei F0204]
 gi|320131324|gb|EFW23892.1| ribonuclease III [Solobacterium moorei F0204]
          Length = 226

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 100/208 (48%), Gaps = 6/208 (2%)

Query: 19  NRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           N  ++++A  HSS +H ++     ERLEF+GD +L L  S  ++    +  EG ++    
Sbjct: 18  NAKMIQQAFIHSSYAHEHKNKNDNERLEFMGDAVLQLWSSNAIYPL--NLSEGHMTRLRA 75

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
            LV  +  +   R+L L  ++ + S   K       +I AD+ E+ + AL+LD G++   
Sbjct: 76  QLVCEKALAIYGRQLHLNDYLLLGSGEEKTGGRNKDAIIADMFEAFLGALFLDQGMDAVD 135

Query: 137 TFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
             + +    R           D KT+LQE+  +    T +Y++   +GP + P F + V 
Sbjct: 136 NILSEVITPRLAHPEDVGVIHDYKTKLQEYVQSDSRQTVKYELVSETGPSNAPEFVMNVL 195

Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           + GL    G   SK+ AEQ AA    ++
Sbjct: 196 VDGLVLGTGSGQSKKQAEQNAARNAFEK 223


>gi|87117463|gb|ABD20025.1| Rnc [Shigella dysenteriae]
          Length = 178

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 89/172 (51%), Gaps = 3/172 (1%)

Query: 54  LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
           +I+  L++ F    EG++S    +LV   T +++ARE +L   +R+     K       S
Sbjct: 3   VIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRRES 62

Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGV 171
           I AD VE+LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +   
Sbjct: 63  ILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLP 122

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222
            P Y V    G  HD  FT+  ++SGL+ P  G   S+R AEQ AA + LK+
Sbjct: 123 LPTYMVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQALKK 174


>gi|148238540|ref|YP_001223927.1| ribonuclease III [Synechococcus sp. WH 7803]
 gi|147847079|emb|CAK22630.1| Ribonuclease III [Synechococcus sp. WH 7803]
          Length = 240

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 99/203 (48%), Gaps = 6/203 (2%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           L +ALTH+S        +E+LEFLGD +L L  S  +   +     GE S     LVS  
Sbjct: 32  LNEALTHTS--SGLNPHHEQLEFLGDAVLRLAASEFIATAYPQMPVGERSSLRAQLVSDR 89

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
             +Q+   + +A + R+      D  +  T I+A++ E+LI A+Y   G++    ++  +
Sbjct: 90  WLAQLGEAIAIAQWWRIGPKASGDPSAAAT-IRAELSEALIGAVYRIAGLQTVQAWLTPH 148

Query: 143 WKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISGLA 199
           W+    A+ +  +R ++K+ LQEW+  +    P Y  +  S    DP RF   V +    
Sbjct: 149 WQTSAEAVLADPYRGNSKSALQEWSQGQGLGLPRYSCSEVSQSHGDPKRFQASVTLPPDL 208

Query: 200 PAQGMDCSKRAAEQVAAAEVLKR 222
            A G   S+R AEQ AA  ++ +
Sbjct: 209 SAAGWGGSRREAEQQAAEALMAQ 231


>gi|312131056|ref|YP_003998396.1| rnase iii [Leadbetterella byssophila DSM 17132]
 gi|311907602|gb|ADQ18043.1| RNAse III [Leadbetterella byssophila DSM 17132]
          Length = 242

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 103/217 (47%), Gaps = 23/217 (10%)

Query: 13  IGYAFANRSLLEKALTHSSISH-----SYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           +G   +N  L + A  H+S S       ++ES ERLEFLGD +LGL++   LF  +    
Sbjct: 24  VGAKPSNPLLYQLAFRHTSASKESMFKGFRESNERLEFLGDAVLGLIVGEYLFKKYPFKN 83

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG L+   + +V+ E+ + V R L L + I   SD  ++     TS+  D +E+LI A+Y
Sbjct: 84  EGFLTEIRSRIVNRESLNNVGRRLGLENLI--ESDGARNFQR--TSLLGDAMEALIGAIY 139

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDA--------KTELQEWAHAKFGVTPEYKVTF 179
           LD G +    FV        L S  F  D         K+ +  WA ++ G   E+ +  
Sbjct: 140 LDKGYKFTQKFV-----VSKLLSNHFDLDEVISNNTNYKSSILSWAQSE-GKKVEFVIVE 193

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             G +H   F   V + G   + G   +K+ AEQ A+
Sbjct: 194 EKGKNHSREFVAQVLVDGEIISNGNGWNKKKAEQDAS 230


>gi|296393287|ref|YP_003658171.1| ribonuclease III [Segniliparus rotundus DSM 44985]
 gi|296180434|gb|ADG97340.1| ribonuclease III [Segniliparus rotundus DSM 44985]
          Length = 338

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/204 (32%), Positives = 106/204 (51%), Gaps = 8/204 (3%)

Query: 21  SLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           SL+  ALTH S ++ + E  + ERLEFLGD +LGL+++  L+      +EGEL+    ++
Sbjct: 118 SLMTLALTHRSWANEHGEVPTNERLEFLGDTVLGLVVTEQLYVTHPDKEEGELAKLRANI 177

Query: 79  VSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
           VS  + +++AR L    L  ++ + +   +       SI AD +E++I A+++  GIE A
Sbjct: 178 VSTASLAEIARRLGKGGLGEYLYLGNGEVRTGGKNKDSILADGLEAVIGAVHIQYGIEKA 237

Query: 136 GTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
              V         ++ +     D KT LQE    +    P Y+VT  +GPDH+  FT VV
Sbjct: 238 REVVLALCAPLLARAARLGAGLDWKTSLQELCARRGLRPPVYEVT-EAGPDHEKLFTAVV 296

Query: 194 EISGLAPAQGMDCSKRAAEQVAAA 217
            I   +   G   +K+ AE  AA 
Sbjct: 297 LIEEKSLGTGSGRTKKEAEMKAAG 320


>gi|183601845|ref|ZP_02963214.1| ribonuclease III [Bifidobacterium animalis subsp. lactis HN019]
 gi|219682760|ref|YP_002469143.1| ribonuclease III [Bifidobacterium animalis subsp. lactis AD011]
 gi|241190336|ref|YP_002967730.1| ribonuclease III [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241195742|ref|YP_002969297.1| ribonuclease III [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|183218730|gb|EDT89372.1| ribonuclease III [Bifidobacterium animalis subsp. lactis HN019]
 gi|219620410|gb|ACL28567.1| ribonuclease III [Bifidobacterium animalis subsp. lactis AD011]
 gi|240248728|gb|ACS45668.1| ribonuclease III [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240250296|gb|ACS47235.1| ribonuclease III [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|295793323|gb|ADG32858.1| ribonuclease III [Bifidobacterium animalis subsp. lactis V9]
          Length = 258

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 71/210 (33%), Positives = 106/210 (50%), Gaps = 21/210 (10%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL +ALTH S SH ++  ++YERLEFLGD +L  +++  LF  +    EG+L+      V
Sbjct: 30  LLVEALTHRSFSHEHEGVKNYERLEFLGDAVLEFVVTETLFKQYPDKSEGQLAKIRAKAV 89

Query: 80  SAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI----EV 134
           S E+ S +AR+ L +  +I +     +   +  +SI  D+VESLI A ++  G+    EV
Sbjct: 90  SEESLSAIARDRLHVGPYILLGHGESEQGGAEKSSILCDIVESLIGATFVQYGVDKAREV 149

Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV- 193
               VD    + A +      D KT L   AH      P Y+++   GP++   FT    
Sbjct: 150 VHHLVDDTLAEVATEGPAL--DWKTSLTVKAHEMGLPEPRYQMSV-GGPEYALEFTAFAM 206

Query: 194 -----EISGLAPAQGMDCSKRAAEQVAAAE 218
                E+ G+    G   SKR A Q+AAAE
Sbjct: 207 LGDSKEVLGV----GNGSSKRKA-QLAAAE 231


>gi|257068990|ref|YP_003155245.1| RNAse III [Brachybacterium faecium DSM 4810]
 gi|256559808|gb|ACU85655.1| RNAse III [Brachybacterium faecium DSM 4810]
          Length = 250

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 107/213 (50%), Gaps = 8/213 (3%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71
           G    +  LLE +LTH S S+        ERLEFLGD +L L ++  L+    +  EG+L
Sbjct: 27  GADLQDSGLLELSLTHRSYSYENDGLPHNERLEFLGDAVLQLAVTEHLYAAHPTLPEGDL 86

Query: 72  SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131
           + R  + VS    + +A +LDL +++R+             SI AD  E++I A++L  G
Sbjct: 87  ARRRAATVSTRALAVIASKLDLGAYVRLGRGEDLTGGRAKASILADTTEAVIGAVHLALG 146

Query: 132 IEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
            +V+  FV    +   L S +F     D K+ LQE A A+ G    Y ++  SG +H   
Sbjct: 147 QDVSRRFVLDLLRP-LLDSDEFLEAGYDFKSRLQEIAAAE-GENVTYALS-ESGLEHQKV 203

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +T  V + G+  A+G   SK+ AE  AA   ++
Sbjct: 204 YTATVTVPGIVTARGDGASKKDAELAAAQNAVR 236


>gi|289178059|gb|ADC85305.1| Ribonuclease III [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 270

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 71/210 (33%), Positives = 106/210 (50%), Gaps = 21/210 (10%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL +ALTH S SH ++  ++YERLEFLGD +L  +++  LF  +    EG+L+      V
Sbjct: 42  LLVEALTHRSFSHEHEGVKNYERLEFLGDAVLEFVVTETLFKQYPDKSEGQLAKIRAKAV 101

Query: 80  SAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI----EV 134
           S E+ S +AR+ L +  +I +     +   +  +SI  D+VESLI A ++  G+    EV
Sbjct: 102 SEESLSAIARDRLHVGPYILLGHGESEQGGAEKSSILCDIVESLIGATFVQYGVDKAREV 161

Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV- 193
               VD    + A +      D KT L   AH      P Y+++   GP++   FT    
Sbjct: 162 VHHLVDDTLAEVATEGPAL--DWKTSLTVKAHEMGLPEPRYQMSV-GGPEYALEFTAFAM 218

Query: 194 -----EISGLAPAQGMDCSKRAAEQVAAAE 218
                E+ G+    G   SKR A Q+AAAE
Sbjct: 219 LGDSKEVLGV----GNGSSKRKA-QLAAAE 243


>gi|212716732|ref|ZP_03324860.1| hypothetical protein BIFCAT_01669 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660436|gb|EEB21011.1| hypothetical protein BIFCAT_01669 [Bifidobacterium catenulatum DSM
           16992]
          Length = 278

 Score = 82.0 bits (201), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 73/206 (35%), Positives = 105/206 (50%), Gaps = 13/206 (6%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL +ALTH S SH     ++YERLEFLGD +L L+ +  L+       EG+L+      V
Sbjct: 33  LLVEALTHRSFSHENPGAKNYERLEFLGDAVLELVSTETLYKAHPDMNEGQLAKMRAKAV 92

Query: 80  SAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE----V 134
           S E+ S++ARE L+   +I +         +  +SI  D+VESLI A ++  GI+    V
Sbjct: 93  SEESLSKIAREKLNAGPYILLGHGESDQGGADKSSILCDIVESLIGATFIQHGIDEARRV 152

Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
               VD+   + A +      D KT L   AH      P Y+++  SGP++   FT  V 
Sbjct: 153 VHHLVDETLAEVATEGPAL--DWKTSLTVKAHGMGFGEPRYQMSV-SGPEYAQVFTANVM 209

Query: 195 I--SGLAPAQGMDCSKRAAEQVAAAE 218
           +  S    + G   SKR A Q+AAAE
Sbjct: 210 LGESDEIISTGTGTSKRKA-QLAAAE 234


>gi|120403163|ref|YP_952992.1| ribonuclease III [Mycobacterium vanbaalenii PYR-1]
 gi|119955981|gb|ABM12986.1| RNAse III [Mycobacterium vanbaalenii PYR-1]
          Length = 235

 Score = 82.0 bits (201), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 64/185 (34%), Positives = 94/185 (50%), Gaps = 14/185 (7%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL  ALTH S S+      + ERLEFLGD +LGL I+  L++      EG+L+    S+V
Sbjct: 20  LLTIALTHRSYSYENGGVPTNERLEFLGDSVLGLTITEELYHRHPDRSEGDLAKLRASIV 79

Query: 80  SAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           + +  + V R L    L +++ +         +  +SI AD VESL+ A+YL+ G EVA 
Sbjct: 80  NTQALADVGRNLTEHGLGAYLLLGKGEENSGGADKSSILADGVESLLGAIYLECGGEVAR 139

Query: 137 TFVDKYWKQ-----RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
             + + +         L +G    D K+ LQE   ++    P Y VT  +GPDHD  FT 
Sbjct: 140 EVILRLFSSLLDTAPTLGAG---LDWKSSLQELTASRGLGAPTYVVT-STGPDHDKEFTA 195

Query: 192 VVEIS 196
            V + 
Sbjct: 196 AVMVG 200


>gi|307703518|ref|ZP_07640460.1| ribonuclease III [Streptococcus oralis ATCC 35037]
 gi|307622925|gb|EFO01920.1| ribonuclease III [Streptococcus oralis ATCC 35037]
          Length = 190

 Score = 82.0 bits (201), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 87/180 (48%), Gaps = 3/180 (1%)

Query: 45  FLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR 104
           FLGD +L LLIS  L+  +    EG+LS     +V  E+ +  AR+     FI++     
Sbjct: 6   FLGDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEE 65

Query: 105 KDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQ 162
           K       +I  D  E+ + AL LD  +     F+ +    + +++G F   +D KT LQ
Sbjct: 66  KSGGRNRDTILGDAFEAFLGALLLDKDVARVKEFIYQVMIPK-VEAGDFEMIKDYKTHLQ 124

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E       V   Y+VT  +GP HD  F V V + G +  +G   SK+ AEQ AA   +++
Sbjct: 125 ELLQVNGDVDIRYQVTSETGPAHDKVFDVEVLVEGKSIGKGQGRSKKLAEQEAAKNAVEK 184


>gi|225351172|ref|ZP_03742195.1| hypothetical protein BIFPSEUDO_02762 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158628|gb|EEG71870.1| hypothetical protein BIFPSEUDO_02762 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 275

 Score = 82.0 bits (201), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 73/206 (35%), Positives = 105/206 (50%), Gaps = 13/206 (6%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL +ALTH S SH     ++YERLEFLGD +L L+ +  L+       EG+L+      V
Sbjct: 33  LLVEALTHRSFSHENPGAKNYERLEFLGDAVLELVSTETLYKAHPDMNEGQLAKMRAKAV 92

Query: 80  SAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE----V 134
           S E+ S++ARE L+   +I +         +  +SI  D+VESLI A ++  GI+    V
Sbjct: 93  SEESLSKIAREKLNAGPYILLGHGESDQGGADKSSILCDIVESLIGATFIQHGIDEARRV 152

Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
               VD+   + A +      D KT L   AH      P Y+++  SGP++   FT  V 
Sbjct: 153 VHHLVDETLAEVATEGPAL--DWKTSLTVKAHGMGFGEPRYQMSV-SGPEYAQVFTANVM 209

Query: 195 I--SGLAPAQGMDCSKRAAEQVAAAE 218
           +  S    + G   SKR A Q+AAAE
Sbjct: 210 LGESDEIISTGTGTSKRKA-QLAAAE 234


>gi|218131792|ref|ZP_03460596.1| hypothetical protein BACEGG_03413 [Bacteroides eggerthii DSM 20697]
 gi|217986095|gb|EEC52434.1| hypothetical protein BACEGG_03413 [Bacteroides eggerthii DSM 20697]
          Length = 301

 Score = 82.0 bits (201), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 113/225 (50%), Gaps = 13/225 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y    K +G+   N    ++AL H S S   ++    + ERLEFLGD IL  ++  +++ 
Sbjct: 32  YFCFYKILGFFPRNIRFYQQALLHKSTSVRSEKGRPLNNERLEFLGDAILDAIVGDIVYK 91

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF+  +EG L+   + +V  ET +++A E+ L   ++ S+       S  + +  +  E+
Sbjct: 92  HFEGRREGFLTNTRSKIVQRETLNKLAVEIGLDKLVKYST----RSSSHNSYMYGNAFEA 147

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVT 178
           LI A+YLD G E    F+++   +  +   K  R   + K++L EW+  K  +   +++ 
Sbjct: 148 LIGAIYLDQGYERCKQFMEEKILKNYIDLDKMSRKEVNFKSKLIEWSQ-KNKMEVSFELI 206

Query: 179 FRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            +S   D++P F   V I  L    G   SK+ ++Q AA   LK+
Sbjct: 207 EQSLDRDYNPMFHTEVLIENLPAGTGTGYSKKESQQNAAQMALKK 251


>gi|290508248|ref|ZP_06547619.1| ribonuclease III [Klebsiella sp. 1_1_55]
 gi|289777642|gb|EFD85639.1| ribonuclease III [Klebsiella sp. 1_1_55]
          Length = 176

 Score = 82.0 bits (201), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 89/172 (51%), Gaps = 3/172 (1%)

Query: 54  LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
           +I+  L++ F    EG++S    +LV   T +++ARE +L   +R+     K       S
Sbjct: 1   MIANALYHRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRES 60

Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGV 171
           I AD VE+LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +   
Sbjct: 61  ILADTVEALIGGVFLDSDIQNVERLILSWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLP 120

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222
            P Y V    G  HD  FT+  ++SGL+ P  G   S+R AEQ AA + LK+
Sbjct: 121 LPSYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQALKK 172


>gi|24379904|ref|NP_721859.1| ribonuclease III [Streptococcus mutans UA159]
 gi|81451148|sp|Q8DT66|RNC_STRMU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|24377882|gb|AAN59165.1|AE014983_6 putative ribonuclease III [Streptococcus mutans UA159]
          Length = 231

 Score = 82.0 bits (201), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 114/225 (50%), Gaps = 11/225 (4%)

Query: 8   TLEKRIG----YAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59
           TLEK++       F+++ LLE A TH+S ++ ++       ERLEFLGD +L L IS  L
Sbjct: 3   TLEKKLAEDFKIVFSDKELLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLTISHYL 62

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F+ +    EG+LS   + +V  E+ +  +R      +I++     K       +I  D+ 
Sbjct: 63  FDKYPQKAEGDLSKMRSMIVREESLAGFSRNCHFDRYIKLGKGEEKSGGRQRDTILGDLF 122

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177
           E+ + AL LD G++    F+++    + +++  + R  D KT LQE       V  +Y+V
Sbjct: 123 EAFLGALLLDAGLKAVEAFLNQVVIPK-VENNNYERVTDYKTALQELLQVDGDVLIDYEV 181

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              SGP H   F V V ++    + G   SK+ AEQ AA   L++
Sbjct: 182 LKESGPAHAKCFEVAVSMNHEKLSSGTGKSKKLAEQEAAKNALEK 226


>gi|33864214|ref|NP_895774.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9313]
 gi|33635798|emb|CAE22123.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9313]
          Length = 281

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 105/207 (50%), Gaps = 11/207 (5%)

Query: 21  SLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           +++++ALTH+S     QE  ++ERLEFLGD +L L  S  +  HF     GE S     L
Sbjct: 52  AVIDEALTHTSA----QEIINHERLEFLGDAVLRLAASEYIDRHFPRMNVGERSALRAHL 107

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY-LDGGIEVAGT 137
           VS    ++V + + + S + +      D  S   ++QA+  E+LI ALY     +E    
Sbjct: 108 VSDRWLAEVGQRIGIESVLIIGPMAAGDA-SAKPTLQAEATEALIGALYECWQSLEPIHR 166

Query: 138 FVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVE 194
           ++  +W++   A+ +   R ++K+ LQEW+ A+    P Y+   RS    DP R+   V 
Sbjct: 167 WLTPHWQEASSAVLTDPHRLNSKSALQEWSQARGLGLPRYECAERSKQHGDPQRYVCQVH 226

Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +      +G   S+R AEQ AA   L+
Sbjct: 227 LDDRPIGEGWGGSRRNAEQEAARRSLQ 253


>gi|255017842|ref|ZP_05289968.1| ribonuclease III [Listeria monocytogenes FSL F2-515]
          Length = 158

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 78/141 (55%), Gaps = 4/141 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++  L++ +G+ F N  LL++A THSS  + ++    +  ERLEFLGD +L L +S  LF
Sbjct: 3   QWEELQESVGFDFKNVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N +    EG ++    ++V   +  + A  +  + ++R+     K       ++ ADV E
Sbjct: 63  NKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSXYVRLGKGEEKAGGRTRPALLADVFE 122

Query: 121 SLIAALYLDGGIEVAGTFVDK 141
           S I ALYLD GI+   TF+++
Sbjct: 123 SFIGALYLDNGIDKVVTFLER 143


>gi|325105464|ref|YP_004275118.1| ribonuclease III [Pedobacter saltans DSM 12145]
 gi|324974312|gb|ADY53296.1| ribonuclease III [Pedobacter saltans DSM 12145]
          Length = 242

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 103/228 (45%), Gaps = 17/228 (7%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           L   IG+   N SL   A  H SI+       + S ERLEFLGD +LG +++ +LF  + 
Sbjct: 21  LRNLIGFVPGNLSLYRMAFRHKSIALGIKKGVKNSNERLEFLGDAVLGAVVAEVLFKMYP 80

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG L+   + +VS    +Q+ ++L     I        ++ S  +S+  D  E+L+ 
Sbjct: 81  YKDEGFLTEMRSKIVSRANLNQLGKKLGFNKLIEFDPS-TVNISSKQSSLLGDAFEALVG 139

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSG-------KFRRDAKTELQEWAHAKFGVTPEYKV 177
           A+YLD G      F   +   R L              + K+ L EW   +     ++ +
Sbjct: 140 AVYLDKGY----NFTKDFLINRILNPHVDIHTLEVTETNFKSRLIEWCQ-RLSKEIQFNL 194

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
                 D D  FT+ V I G   A G+D +K+ AE++AA +  +  G+
Sbjct: 195 IPNQEGDSDKLFTIQVVIDGELMATGVDYNKKNAEKLAAEKTCEMLGV 242


>gi|87117418|gb|ABD19995.1| Rnc [Shigella flexneri]
 gi|87117421|gb|ABD19997.1| Rnc [Shigella flexneri]
 gi|87117427|gb|ABD20001.1| Rnc [Shigella flexneri]
 gi|87117430|gb|ABD20003.1| Rnc [Shigella dysenteriae]
 gi|87117433|gb|ABD20005.1| Rnc [Shigella flexneri]
 gi|87117436|gb|ABD20007.1| Rnc [Shigella flexneri]
 gi|87117439|gb|ABD20009.1| Rnc [Shigella flexneri]
 gi|87117442|gb|ABD20011.1| Rnc [Shigella boydii]
 gi|87117445|gb|ABD20013.1| Rnc [Shigella dysenteriae]
 gi|87117448|gb|ABD20015.1| Rnc [Shigella dysenteriae]
 gi|87117451|gb|ABD20017.1| Rnc [Shigella boydii]
 gi|87117454|gb|ABD20019.1| Rnc [Shigella boydii]
 gi|87117457|gb|ABD20021.1| Rnc [Shigella dysenteriae]
 gi|87117460|gb|ABD20023.1| Rnc [Shigella dysenteriae]
 gi|87117466|gb|ABD20027.1| Rnc [Shigella dysenteriae]
 gi|87117469|gb|ABD20029.1| Rnc [Shigella boydii]
 gi|87117472|gb|ABD20031.1| Rnc [Shigella boydii]
 gi|87117475|gb|ABD20033.1| Rnc [Shigella boydii]
 gi|87117478|gb|ABD20035.1| Rnc [Shigella dysenteriae]
 gi|87117481|gb|ABD20037.1| Rnc [Shigella flexneri]
 gi|87117484|gb|ABD20039.1| Rnc [Shigella dysenteriae]
 gi|87117487|gb|ABD20041.1| Rnc [Shigella boydii]
 gi|87117490|gb|ABD20043.1| Rnc [Shigella boydii]
 gi|87117493|gb|ABD20045.1| Rnc [Shigella boydii]
 gi|87117499|gb|ABD20049.1| Rnc [Shigella dysenteriae]
 gi|87117502|gb|ABD20051.1| Rnc [Shigella boydii]
 gi|87117505|gb|ABD20053.1| Rnc [Shigella dysenteriae]
 gi|87117508|gb|ABD20055.1| Rnc [Shigella boydii]
 gi|87117511|gb|ABD20057.1| Rnc [Shigella boydii]
 gi|87117517|gb|ABD20061.1| Rnc [Shigella boydii]
 gi|87117523|gb|ABD20065.1| Rnc [Shigella boydii]
 gi|87117526|gb|ABD20067.1| Rnc [Shigella flexneri]
 gi|87117529|gb|ABD20069.1| Rnc [Shigella flexneri]
 gi|87117532|gb|ABD20071.1| Rnc [Shigella boydii]
 gi|87117535|gb|ABD20073.1| Rnc [Escherichia coli]
 gi|87117538|gb|ABD20075.1| Rnc [Escherichia coli]
 gi|87117541|gb|ABD20077.1| Rnc [Escherichia coli]
          Length = 178

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 89/172 (51%), Gaps = 3/172 (1%)

Query: 54  LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
           +I+  L++ F    EG++S    +LV   T +++ARE +L   +R+     K       S
Sbjct: 3   VIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRRES 62

Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGV 171
           I AD VE+LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +   
Sbjct: 63  ILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLP 122

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222
            P Y V    G  HD  FT+  ++SGL+ P  G   S+R AEQ AA + LK+
Sbjct: 123 LPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQALKK 174


>gi|87117496|gb|ABD20047.1| Rnc [Shigella dysenteriae]
          Length = 178

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 89/172 (51%), Gaps = 3/172 (1%)

Query: 54  LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
           +I+  L++ F    EG++S    +LV   T +++ARE +L   +R+     K       S
Sbjct: 3   VIANALYHRFPCVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRRES 62

Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGV 171
           I AD VE+LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +   
Sbjct: 63  ILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLP 122

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222
            P Y V    G  HD  FT+  ++SGL+ P  G   S+R AEQ AA + LK+
Sbjct: 123 LPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQALKK 174


>gi|290580116|ref|YP_003484508.1| putative ribonuclease III [Streptococcus mutans NN2025]
 gi|254997015|dbj|BAH87616.1| putative ribonuclease III [Streptococcus mutans NN2025]
          Length = 231

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 114/225 (50%), Gaps = 11/225 (4%)

Query: 8   TLEKRIG----YAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59
           TLEK++       F+++ LLE A TH+S ++ ++       ERLEFLGD +L L IS  L
Sbjct: 3   TLEKKLAEDFKIVFSDKELLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLTISRYL 62

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F+ +    EG+LS   + +V  E+ +  +R      +I++     K       +I  D+ 
Sbjct: 63  FDKYPQKAEGDLSKMRSMIVREESLAGFSRNCHFDRYIKLGKGEEKSGGRQRDTILGDLF 122

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177
           E+ + AL LD G++    F+++    + +++  + R  D KT LQE       V  +Y+V
Sbjct: 123 EAFLGALLLDAGLKAVEAFLNQVVIPK-VENNNYERVTDYKTALQELLQVDGDVLIDYEV 181

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              SGP H   F V V ++    + G   SK+ AEQ AA   L++
Sbjct: 182 LKESGPAHAKCFEVAVSMNHEKLSSGTGKSKKLAEQEAAKNALEK 226


>gi|118462414|ref|YP_882955.1| ribonuclease III [Mycobacterium avium 104]
 gi|254776229|ref|ZP_05217745.1| ribonuclease III [Mycobacterium avium subsp. avium ATCC 25291]
 gi|118163701|gb|ABK64598.1| ribonuclease III [Mycobacterium avium 104]
          Length = 237

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 65/182 (35%), Positives = 93/182 (51%), Gaps = 8/182 (4%)

Query: 22  LLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL  ALTH S +  H    + ERLEFLGD +LGL I+  L++      EG+L+    S+V
Sbjct: 19  LLSLALTHRSYAYEHGGLPTNERLEFLGDAVLGLTITDALYHRHPDRTEGDLAKLRASVV 78

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSF---MTSIQADVVESLIAALYLDGGIEVAG 136
           + +  + VAR+L            R +  +     +SI AD +ESL+ A+YL  GI+ A 
Sbjct: 79  NTQALADVARKLCDGGLGAHLLLGRGEANTGGADKSSILADGMESLLGAIYLQHGIDTAR 138

Query: 137 TFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
             + + +     A  +     D KT LQE   A+    P Y VT  +GPDHD  FT VV 
Sbjct: 139 EVILRLFGALLDAAPTLGAGLDWKTSLQELTAARGMGAPSYLVT-STGPDHDKEFTAVVV 197

Query: 195 IS 196
           ++
Sbjct: 198 VA 199


>gi|270294929|ref|ZP_06201130.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317477924|ref|ZP_07937108.1| ribonuclease III [Bacteroides sp. 4_1_36]
 gi|270274176|gb|EFA20037.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316905940|gb|EFV27710.1| ribonuclease III [Bacteroides sp. 4_1_36]
          Length = 309

 Score = 81.6 bits (200), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 112/218 (51%), Gaps = 13/218 (5%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +G+   +  + ++AL H SIS   ++    + ERLEFLGD IL  ++  +++ HF+  +E
Sbjct: 44  LGFFPRDIKVYQQALLHKSISMRSEKGRPINNERLEFLGDAILDAIVGDIVYRHFEGRRE 103

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G L+   + +V  ET +++A E+ L   ++ S+       S  + +  +  E+ I A+YL
Sbjct: 104 GFLTNTRSKIVQRETLNKLAVEIGLDKLVKYST----RSSSHNSYMYGNAFEAFIGAIYL 159

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKVTFRSGPD 184
           D G +    F+++   +  +   K  R   + K++L EW+   K  V+ E    F    +
Sbjct: 160 DQGYDRCKQFMEEKIFKNYIDLDKMSRKEVNFKSKLIEWSQKNKMEVSFELIEQFLD-EE 218

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           ++P F   V I G++   G   SK+ ++Q AA   LK+
Sbjct: 219 YNPMFHTEVRIEGISAGTGTGYSKKESQQNAAQMALKK 256


>gi|293363981|ref|ZP_06610717.1| ribonuclease III [Mycoplasma alligatoris A21JP2]
 gi|292552471|gb|EFF41245.1| ribonuclease III [Mycoplasma alligatoris A21JP2]
          Length = 226

 Score = 81.6 bits (200), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 107/223 (47%), Gaps = 33/223 (14%)

Query: 19  NRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           N+ +  +AL H S     S  ESYERLEFLGD +L L +S+ ++  F + ++G+++    
Sbjct: 20  NKLIYFQALKHGSFVKKQSKLESYERLEFLGDSVLQLFVSSYIYTKFPNMEQGKMTELRA 79

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
            +V+A + SQV+ ++ L + ++             T +Q+D+ ES+I A+++D G+  A 
Sbjct: 80  KVVNANSLSQVSNKIGLINLLKTGGGQTAVSVKSSTKVQSDIFESIIGAIFVDLGLNHAY 139

Query: 137 TF--------VDKYWKQRALKSGKFRRDAKTELQEW------AHAKFGVTPEYKVTFRSG 182
            F        +D  +K          +D KT LQE+       + K+ V      +F + 
Sbjct: 140 KFIRLHLSSTIDNLFKHE-------NKDPKTRLQEYFQNISRENIKYIVDQLPNKSFSAK 192

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
             HD    +V  I       G   SK+ +E  AA E LK+  I
Sbjct: 193 ATHDK---IVYGI-------GKGSSKKESEINAALEALKKLNI 225


>gi|41409093|ref|NP_961929.1| ribonuclease III [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|81413486|sp|Q73VL8|RNC_MYCPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|41397452|gb|AAS05312.1| Rnc [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 237

 Score = 81.6 bits (200), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 65/182 (35%), Positives = 93/182 (51%), Gaps = 8/182 (4%)

Query: 22  LLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL  ALTH S +  H    + ERLEFLGD +LGL I+  L++      EG+L+    S+V
Sbjct: 19  LLSLALTHRSYAYEHGGLPTNERLEFLGDAVLGLTITDALYHRHPDRTEGDLAKLRASVV 78

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSF---MTSIQADVVESLIAALYLDGGIEVAG 136
           + +  + VAR+L            R +  +     +SI AD +ESL+ A+YL  GI+ A 
Sbjct: 79  NTQALADVARKLCDGGLGAHLLLGRGEANTGGADKSSILADGMESLLGAIYLQHGIDTAR 138

Query: 137 TFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
             + + +     A  +     D KT LQE   A+    P Y VT  +GPDHD  FT VV 
Sbjct: 139 EVILRLFGALLDAAPTLGAGLDWKTSLQELTAARGMGAPSYLVT-STGPDHDKEFTAVVV 197

Query: 195 IS 196
           ++
Sbjct: 198 VA 199


>gi|160888577|ref|ZP_02069580.1| hypothetical protein BACUNI_00994 [Bacteroides uniformis ATCC 8492]
 gi|156861891|gb|EDO55322.1| hypothetical protein BACUNI_00994 [Bacteroides uniformis ATCC 8492]
          Length = 306

 Score = 81.6 bits (200), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 112/218 (51%), Gaps = 13/218 (5%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +G+   +  + ++AL H SIS   ++    + ERLEFLGD IL  ++  +++ HF+  +E
Sbjct: 41  LGFFPRDIKVYQQALLHKSISMRSEKGRPINNERLEFLGDAILDAIVGDIVYRHFEGRRE 100

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G L+   + +V  ET +++A E+ L   ++ S+       S  + +  +  E+ I A+YL
Sbjct: 101 GFLTNTRSKIVQRETLNKLAVEIGLDKLVKYST----RSSSHNSYMYGNAFEAFIGAIYL 156

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKVTFRSGPD 184
           D G +    F+++   +  +   K  R   + K++L EW+   K  V+ E    F    +
Sbjct: 157 DQGYDRCKQFMEEKIFKNYIDLDKMSRKEVNFKSKLIEWSQKNKMEVSFELIEQFLD-EE 215

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           ++P F   V I G++   G   SK+ ++Q AA   LK+
Sbjct: 216 YNPMFHTEVRIEGISAGTGTGYSKKESQQNAAQMALKK 253


>gi|295396031|ref|ZP_06806215.1| ribonuclease III [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971119|gb|EFG47010.1| ribonuclease III [Brevibacterium mcbrellneri ATCC 49030]
          Length = 230

 Score = 81.6 bits (200), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 106/221 (47%), Gaps = 8/221 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           S L KR+G    +   L  +LTH S +  +    + ERLEFLGD +L L  +  LF+H  
Sbjct: 2   SELNKRLGVDI-DPETLRLSLTHRSYAFENGGIPTNERLEFLGDAVLQLKTTKWLFDHNT 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            A EG L+   +++V++   + VAR   +  F+ + +   +       SI AD VE++I 
Sbjct: 61  EASEGRLAKMRSAVVNSRALAGVARTYGIGEFLLLGNGEERTGGRDKDSILADTVEAIIG 120

Query: 125 ALYLDGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           A Y+  G + A   V++      + A+  G    D KT LQE A         Y VT   
Sbjct: 121 ACYVSQGPDAANALVERLVGPLLEDAVNLGA-GMDYKTTLQEAAADLSLGAVHYDVTGE- 178

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           GPDH   FT V  +     A G   SK+ AE VAA   +K+
Sbjct: 179 GPDHARVFTAVAYLGETRWASGEGTSKKNAELVAAEIAVKK 219


>gi|328777204|ref|XP_394444.3| PREDICTED: ribonuclease 3 [Apis mellifera]
          Length = 1290

 Score = 81.6 bits (200), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 110/228 (48%), Gaps = 14/228 (6%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  SI ++     S +RLEFLGD +L L++S  L+ +
Sbjct: 1010 KLTKFEESIGIEFTHIRLLARAFTDRSIGYTNLTLGSNQRLEFLGDTVLQLIVSEYLYKY 1069

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG LS+  +SLV+ +T + V  +L +  +    +          T  +AD++E+ 
Sbjct: 1070 FPEHHEGHLSLLRSSLVNNKTQAVVCDDLGMTQYALYGN----PKAELKTKDRADLLEAF 1125

Query: 123  IAALYLDGGIEVAGTFVDK--YWKQRALKSGKFRRDAKTELQEWAHAKFGV------TPE 174
            + ALY+D G+E    F D   + + +     +   D K++LQ+       +       P 
Sbjct: 1126 LGALYVDKGLEYCRVFCDVCFFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPV 1185

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YKV    GP +   +TV V   G   A+    S + AE  +A E L++
Sbjct: 1186 YKVIECKGPTNTRVYTVAVYFQGKRLAKASGHSIQEAEMNSAKEALEK 1233



 Score = 63.5 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/110 (37%), Positives = 66/110 (60%), Gaps = 9/110 (8%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
           T SSI+H+     ERLEFLGD ++  L S  LF+ F   +EG L+    ++V  +  + +
Sbjct: 861 TESSIAHN-----ERLEFLGDAVVEFLTSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVL 915

Query: 88  ARELDLASFIRVS--SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
           A++L+L  ++  +  SDL  D+   +    A+  E+L+ +L+LDGGIEVA
Sbjct: 916 AKKLNLEEYMLYAHGSDLCHDL--ELRHAMANCFEALMGSLFLDGGIEVA 963


>gi|116071631|ref|ZP_01468899.1| Ribonuclease III [Synechococcus sp. BL107]
 gi|116065254|gb|EAU71012.1| Ribonuclease III [Synechococcus sp. BL107]
          Length = 251

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 103/206 (50%), Gaps = 8/206 (3%)

Query: 21  SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
           +L+++ALTH  IS    +++ERLEFLGD +L L  +  + +H+ +   G  S     LVS
Sbjct: 28  NLVDEALTH--ISAGRGKNFERLEFLGDAVLRLAATEFIDHHYPNLPVGSCSSLRAQLVS 85

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY--LDGGIEVAGTF 138
               +Q+  +L L SF+ +      D  +  T + AD  E+LI A+Y   D  +E    +
Sbjct: 86  DRWLTQLGEKLQLESFLVIGPKALGDEAARAT-LHADATEALIGAIYSGSDNNLEPIHQW 144

Query: 139 VDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEI 195
           +   W+Q      +     + K+ LQEW+ A+    P Y  T +S    DP RF   V++
Sbjct: 145 LTPQWQQTTADVFATPHLFNGKSILQEWSQAEGLGLPNYITTEQSCRHGDPERFKSHVQV 204

Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLK 221
                A G   S++ AEQ AA+  ++
Sbjct: 205 GTRLGADGFGRSRKYAEQNAASNAVQ 230


>gi|86605510|ref|YP_474273.1| ribonuclease III [Synechococcus sp. JA-3-3Ab]
 gi|86554052|gb|ABC99010.1| ribonuclease III [Synechococcus sp. JA-3-3Ab]
          Length = 241

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 97/193 (50%), Gaps = 10/193 (5%)

Query: 22  LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
           LL++AL H S+    Q + +RLEFLGD +L +L +  LF  +     GEL+   + L+S 
Sbjct: 34  LLDQALIHPSLDG--QRNNDRLEFLGDSVLRILATEFLFQSYPHLSVGELTAVRSDLISD 91

Query: 82  ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG---TF 138
              +++A    L  ++ V S  + D+      + AD  E+++ +LYL  G+        +
Sbjct: 92  AHLAELADLHGLERYLEVGSSSQNDLAGRERRL-ADAFEAVLGSLYLSWGMHTLARLHPW 150

Query: 139 VDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
           +D Y++QR  +      RR+ K  LQE     +G  PEY++   +  +H P FT+ V   
Sbjct: 151 LDPYFRQRVEQWFQDPTRRNPKAALQELTQRLWGTLPEYRLV--AAREHPPHFTMEVWGH 208

Query: 197 GLAPAQGMDCSKR 209
           G    +G   SK+
Sbjct: 209 GQCWGRGEGRSKK 221


>gi|329954117|ref|ZP_08295212.1| ribonuclease III [Bacteroides clarus YIT 12056]
 gi|328528094|gb|EGF55074.1| ribonuclease III [Bacteroides clarus YIT 12056]
          Length = 327

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 62/207 (29%), Positives = 105/207 (50%), Gaps = 13/207 (6%)

Query: 24  EKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           ++AL H S S   ++    + ERLEFLGD IL  ++  +++ HF+  +EG L+   + +V
Sbjct: 50  QQALLHKSTSVRSEKGRPLNNERLEFLGDAILDAIVGDIVYKHFEGRREGFLTNTRSKIV 109

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
             ET +++A E+ L   ++ S+       S  + +  +  E+ I A+YLD G E    F+
Sbjct: 110 QRETLNKLAVEIGLDKLVKYST----RSSSHNSYMYGNAFEAFIGAIYLDQGYERCKQFM 165

Query: 140 DKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
           +K   +  +   K  R   + K++L EW+   K  V+ E    F    D++P F   V I
Sbjct: 166 EKKILKNYIDLDKMSRKEVNFKSKLIEWSQKNKMEVSFELIEQFLDR-DYNPMFHTEVRI 224

Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             L+   G   SK+ ++Q AA   LK+
Sbjct: 225 ESLSAGTGTGYSKKESQQNAAQMALKK 251


>gi|171741390|ref|ZP_02917197.1| hypothetical protein BIFDEN_00473 [Bifidobacterium dentium ATCC
           27678]
 gi|171277004|gb|EDT44665.1| hypothetical protein BIFDEN_00473 [Bifidobacterium dentium ATCC
           27678]
          Length = 229

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 73/206 (35%), Positives = 106/206 (51%), Gaps = 13/206 (6%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL +ALTH S SH +   ++YERLEFLGD +L L+ +  L+       EG+L+      V
Sbjct: 18  LLVEALTHRSFSHEHPGAKNYERLEFLGDAVLELVSTETLYAAHPDMTEGQLAKMRAKAV 77

Query: 80  SAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE----V 134
           S E+ S +ARE L +  +I + +   +   +  +SI  D+VESLI A ++  GI+    V
Sbjct: 78  SEESLSHIAREKLHVGPYILLGNGEAEQHGAEKSSILCDIVESLIGATFIQHGIDEARKV 137

Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VV 192
               VD    + A +      D KT L   AH      P Y+++  SGP++   FT   +
Sbjct: 138 VHHLVDDTLAEVATEGPAL--DWKTSLTVKAHDMGLGEPYYRMSV-SGPEYAQVFTAKAM 194

Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAE 218
           +E S      G   SKR A Q+AAAE
Sbjct: 195 LEGSDEVIGIGKGSSKRKA-QLAAAE 219


>gi|157952932|ref|YP_001497824.1| hypothetical protein NY2A_B628R [Paramecium bursaria Chlorella
           virus NY2A]
 gi|155123159|gb|ABT15027.1| hypothetical protein NY2A_B628R [Paramecium bursaria Chlorella
           virus NY2A]
          Length = 268

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 105/234 (44%), Gaps = 31/234 (13%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + +E  IG    +    + A ++++I    + +YER+EF+GD +LG +I+  L+++F   
Sbjct: 45  NDIEYLIGMPIIDFEYYKTAFSYNAIVEG-ESTYERMEFVGDSVLGFIIARYLYDNFPGK 103

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG LS      VS +  S +A  + L +F+ +         +    I  DV E+L+ A+
Sbjct: 104 DEGFLSRLRTKFVSGKFLSSIALRMGLHNFVIMHQKGLYRGWNTNPRILEDVFEALMGAI 163

Query: 127 YLDGGIEVAGTF---------------VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV 171
           Y D GI  A  F               +D  +K R LK  +     K ELQ         
Sbjct: 164 YFDLGINAAKQFFMSTLVKYADIHNLMIDTNYKDRLLKHTR-----KIELQR-------- 210

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            PE+   F  G   +P F V V I+G   + G   S++ AEQ A+   L   GI
Sbjct: 211 -PEFVSVFEKG-GANPSFVVDVVINGQKISTGTGKSRKDAEQNASKLALYSMGI 262


>gi|157953758|ref|YP_001498649.1| hypothetical protein AR158_C568R [Paramecium bursaria Chlorella
           virus AR158]
 gi|156068406|gb|ABU44113.1| hypothetical protein AR158_C568R [Paramecium bursaria Chlorella
           virus AR158]
          Length = 268

 Score = 81.3 bits (199), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 105/234 (44%), Gaps = 31/234 (13%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + +E  IG    +    + A ++++I    + +YER+EF+GD +LG +I+  L+++F   
Sbjct: 45  NDIEYLIGMPIIDFEYYKTAFSYNAIVEG-ESTYERMEFVGDSVLGFIIARYLYDNFPGK 103

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG LS      VS +  S +A  + L +F+ +         +    I  DV E+L+ A+
Sbjct: 104 DEGFLSRLRTKFVSGKFLSSIALRMGLHNFVIMHQKGLYRGWNTNPRILEDVFEALMGAI 163

Query: 127 YLDGGIEVAGTF---------------VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV 171
           Y D GI  A  F               +D  +K R LK  +     K ELQ         
Sbjct: 164 YFDLGINAAKQFFMSTLVKYADIHNLMIDTNYKDRLLKHTR-----KIELQR-------- 210

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            PE+   F  G   +P F V V I+G   + G   S++ AEQ A+   L   GI
Sbjct: 211 -PEFVSVFEKG-GANPSFVVDVVINGQKISTGTGKSRKDAEQNASKLALYSMGI 262


>gi|221126960|ref|XP_002167020.1| PREDICTED: similar to ribonuclease III, nuclear [Hydra
           magnipapillata]
          Length = 576

 Score = 81.3 bits (199), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 110/222 (49%), Gaps = 25/222 (11%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHS-------SISHSYQESYERLEFLGDRILGL 53
           ++  ++ TLEK+IG  F + SLL KALTHS       +I+     +YE+LEFLGD IL  
Sbjct: 350 LTLQKFVTLEKKIGVEFTHISLLVKALTHSVKGLDDETITRG---NYEQLEFLGDAILKY 406

Query: 54  LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
           + S  L+ HF + +EG L++   SL++ +  ++ + E+DL  +I    +      +  T 
Sbjct: 407 ICSDYLYKHFPNHQEGHLTLLRISLINLKCLAKASEEIDLIKYIVFHPNHEPSTTNEKTF 466

Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD---AKTELQEWAHAKFG 170
             +DV E+ +AAL+LD G+      ++     R LK     +D    K++LQ+  +  + 
Sbjct: 467 --SDVFEAFLAALHLDKGLLHCQKLIEVCILSR-LKEFILSQDWLEPKSQLQQCCNTYYN 523

Query: 171 VT-------PEYKVTFRSGPDHDPRFTVVVEISG--LAPAQG 203
            T       P YK    S  +    F V V  +G  L   QG
Sbjct: 524 KTKPDKVEHPVYKRIKLSTINGVQNFKVGVYFNGKRLGTGQG 565



 Score = 43.9 bits (102), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 2/84 (2%)

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S  LF  F     G+LS+  + LV  E    +A +L+L  F+ V    R  V   +    
Sbjct: 230 SMHLFLMFPEKGPGKLSIFRSGLVQGEHLRTIANKLNLVDFLLVKH--RSQVLQNLGYFL 287

Query: 116 ADVVESLIAALYLDGGIEVAGTFV 139
            + VE++I A+YLD G+E A + +
Sbjct: 288 GNAVEAVIGAVYLDAGLEKADSLI 311


>gi|68536283|ref|YP_250988.1| ribonuclease III [Corynebacterium jeikeium K411]
 gi|90101621|sp|Q4JUY7|RNC_CORJK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|68263882|emb|CAI37370.1| ribonuclease III [Corynebacterium jeikeium K411]
          Length = 244

 Score = 81.3 bits (199), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 99/205 (48%), Gaps = 6/205 (2%)

Query: 22  LLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL  ALTH S ++   +  + ERLEFLGD +LGL ++  L+  F    E ++S   + +V
Sbjct: 37  LLRLALTHRSFANENGHLPNNERLEFLGDAVLGLAVAEQLYRQFPERAESDISKMRSGVV 96

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
           +    + VAR L +  +I +             SI AD VES++ A+YL  G EVA   V
Sbjct: 97  NMYALADVARRLGMGDYILLGRGEMLTGGKDKHSILADSVESMLGAIYLHHGFEVARATV 156

Query: 140 DKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197
            + + ++  ++       D KT L E         P Y+V    GP+HD  F   V I  
Sbjct: 157 LRLFAEKITEAPTTGLTMDWKTVLLEKLSDMKLPLPTYEVR-GEGPEHDKTFYATVTIED 215

Query: 198 LAPAQGMDCSKRAAEQVAAAEVLKR 222
           L    G   +K+ AE  AA + +++
Sbjct: 216 LV-THGEGHTKKVAEHAAAKQAVQK 239


>gi|73953910|ref|XP_868231.1| PREDICTED: similar to Ribonuclease III (RNase III) (Drosha) (p241)
            isoform 3 [Canis familiaris]
          Length = 1282

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 55/164 (33%), Positives = 91/164 (55%), Gaps = 7/164 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  ++  +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1103 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1162

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1163 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1221

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQE 163
            IAALY+D  +E   TF++  +  R LK     +   D K++LQ+
Sbjct: 1222 IAALYIDKDLEYVHTFMNVCFFPR-LKEFILNQDWNDPKSQLQQ 1264



 Score = 57.0 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%)

Query: 28   THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
            T S I+H+     ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +
Sbjct: 949  TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 1003

Query: 88   ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135
            A++L+L  F+  +     D+C  S +    A+  E+LI A+YL+G +E A
Sbjct: 1004 AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1051


>gi|323343670|ref|ZP_08083897.1| ribonuclease 3 [Prevotella oralis ATCC 33269]
 gi|323095489|gb|EFZ38063.1| ribonuclease 3 [Prevotella oralis ATCC 33269]
          Length = 361

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 116/225 (51%), Gaps = 13/225 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61
           YS+L + IG+   N S  + AL H SI    S     + ERLEFLGD IL  ++  ++++
Sbjct: 22  YSSLYRIIGFYPRNISYYKLALMHKSIMRRNSKGKPVNNERLEFLGDAILDAIVGHIVYD 81

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF   +EG L+   + LV  +T +++A+E+ +   I +S+       S+M     +  E+
Sbjct: 82  HFPGKREGFLTNTRSKLVQRDTLNKLAQEMGINRLI-LSNGRSSSHNSYMG---GNAFEA 137

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKV- 177
           L+ A+YLD G +    F++K    + +   K      + K++L EW+  K  V  E+K+ 
Sbjct: 138 LVGAIYLDRGYDACMRFMNKRILAQMINIDKVAYKEVNFKSKLIEWSQ-KNRVRMEFKML 196

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             +   +  P F  +V + G+    G   SK+ ++Q+A+   L+R
Sbjct: 197 DQKKDKNGSPMFQYMVCLEGVDGCSGTGYSKKESQQLASKLTLER 241


>gi|332885395|gb|EGK05644.1| hypothetical protein HMPREF9456_02446 [Dysgonomonas mossii DSM
           22836]
          Length = 290

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 112/225 (49%), Gaps = 13/225 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y +  K  G+   N +L E+AL H S S   ++    + ERLEFLGD IL  +++ ++F 
Sbjct: 20  YVSFYKIFGFYPYNITLYEQALLHKSSSIKLKDGKWINNERLEFLGDAILDAIVADIVFK 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F+  KEG L+   + +V  ET +++A EL +   I+ S+  R    +  T +  + +E+
Sbjct: 80  EFEYKKEGFLTNMRSKIVQRETLNKLALELGIDKLIKTSA--RNTTPN--THMYGNALEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALK---SGKFRRDAKTELQEWAHA-KFGVTPEYKV 177
           LI A+YLD G  V+  FV +   +  L      +   + K+ L EW+   K  V+ +   
Sbjct: 136 LIGAIYLDQGYRVSKKFVLERLIKEHLNIDTVAEQEANYKSRLIEWSQKQKISVSFDLVD 195

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +F    ++ P F   V I G     G   SK+ ++Q AA E   +
Sbjct: 196 SF-VDENNTPIFKTAVVILGEQAGLGTGYSKKESQQKAAKEAFNK 239


>gi|283455260|ref|YP_003359824.1| ribonuclease III [Bifidobacterium dentium Bd1]
 gi|283101894|gb|ADB09000.1| rncS Ribonuclease III [Bifidobacterium dentium Bd1]
          Length = 294

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/206 (35%), Positives = 106/206 (51%), Gaps = 13/206 (6%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL +ALTH S SH +   ++YERLEFLGD +L L+ +  L+       EG+L+      V
Sbjct: 83  LLVEALTHRSFSHEHPGAKNYERLEFLGDAVLELVSTETLYAAHPDMTEGQLAKMRAKAV 142

Query: 80  SAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE----V 134
           S E+ S +ARE L +  +I + +   +   +  +SI  D+VESLI A ++  GI+    V
Sbjct: 143 SEESLSHIAREKLHVGPYILLGNGEAEQHGAEKSSILCDIVESLIGATFIQHGIDEARKV 202

Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VV 192
               VD    + A +      D KT L   AH      P Y+++  SGP++   FT   +
Sbjct: 203 VHHLVDDTLAEVATEGPAL--DWKTSLTVKAHDMGLGEPYYRMSV-SGPEYAQVFTAKAM 259

Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAE 218
           +E S      G   SKR A Q+AAAE
Sbjct: 260 LEGSDEVIGIGKGSSKRKA-QLAAAE 284


>gi|306823678|ref|ZP_07457053.1| ribonuclease III [Bifidobacterium dentium ATCC 27679]
 gi|309802879|ref|ZP_07696980.1| ribonuclease III [Bifidobacterium dentium JCVIHMP022]
 gi|304553385|gb|EFM41297.1| ribonuclease III [Bifidobacterium dentium ATCC 27679]
 gi|308220346|gb|EFO76657.1| ribonuclease III [Bifidobacterium dentium JCVIHMP022]
          Length = 294

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/206 (35%), Positives = 106/206 (51%), Gaps = 13/206 (6%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL +ALTH S SH +   ++YERLEFLGD +L L+ +  L+       EG+L+      V
Sbjct: 83  LLVEALTHRSFSHEHPGAKNYERLEFLGDAVLELVSTETLYAAHPDMTEGQLAKMRAKAV 142

Query: 80  SAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE----V 134
           S E+ S +ARE L +  +I + +   +   +  +SI  D+VESLI A ++  GI+    V
Sbjct: 143 SEESLSHIAREKLHVGPYILLGNGEAEQHGAEKSSILCDIVESLIGATFIQHGIDEARKV 202

Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VV 192
               VD    + A +      D KT L   AH      P Y+++  SGP++   FT   +
Sbjct: 203 VHHLVDDTLAEVATEGPAL--DWKTSLTVKAHDMGLGEPYYRMSV-SGPEYAQVFTAKAM 259

Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAE 218
           +E S      G   SKR A Q+AAAE
Sbjct: 260 LEGSDEVIGIGKGSSKRKA-QLAAAE 284


>gi|87117514|gb|ABD20059.1| Rnc [Shigella boydii]
          Length = 178

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 88/172 (51%), Gaps = 3/172 (1%)

Query: 54  LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
           +I+  L++ F    EG++S    +LV   T +++ARE +L   +R+     K       S
Sbjct: 3   VIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRRES 62

Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGV 171
           I AD VE+LI  ++LD  I      +  +++ R   +  G  ++D KT LQE+   +   
Sbjct: 63  ILADTVEALIGGVFLDSDIRTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLP 122

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222
            P Y V    G  HD  FT+  ++SGL+ P  G   S+R AEQ AA + LK+
Sbjct: 123 LPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQALKK 174


>gi|124024288|ref|YP_001018595.1| ribonuclease III [Prochlorococcus marinus str. MIT 9303]
 gi|123964574|gb|ABM79330.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9303]
          Length = 262

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 104/207 (50%), Gaps = 11/207 (5%)

Query: 21  SLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           ++L++ALTH+S     QE  ++ERLEFLGD +L L  S  +  HF     GE S     L
Sbjct: 52  AILDEALTHTSA----QEIINHERLEFLGDAVLRLAASEYIDRHFPRMDVGERSALRAHL 107

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY-LDGGIEVAGT 137
           VS    ++V + + + + + +      D  S   ++QA+  E+LI ALY     +E    
Sbjct: 108 VSDRWLAEVGQRIGIEAVLIIGPMAAGDA-SAKPTLQAEATEALIGALYECWQSLEPIHH 166

Query: 138 FVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVE 194
           ++  +W +   A+ +   R ++K+ LQEW+ A+    P Y+   RS    DP R+   V 
Sbjct: 167 WLTPHWHEASSAVLADPHRLNSKSALQEWSQARGLGLPRYECAERSKQHGDPQRYLCQVH 226

Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +      +G   S+R AEQ AA   L+
Sbjct: 227 LDNRPIGEGWGGSRRNAEQEAARHSLE 253


>gi|332830459|gb|EGK03087.1| hypothetical protein HMPREF9455_01337 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 273

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 111/225 (49%), Gaps = 13/225 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y +  K +G+   N +L E+AL H S S   ++    + ERLEFLGD IL  +++ ++F 
Sbjct: 20  YVSFCKILGFYPYNITLYEQALLHKSSSIKLKDGRWINNERLEFLGDAILDAIVADIVFK 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F+  KEG L+   + +V  ET +++A E+ +   I+ S+  R    +  T +  + +E+
Sbjct: 80  EFEYKKEGFLTNMRSKIVQRETLNRLALEIGIDKLIKTST--RNTTPN--THMYGNALEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALK---SGKFRRDAKTELQEWAHA-KFGVTPEYKV 177
            I A+YLD G   A  FV +   Q  L      +   + K+ L EW+   K  V+ +   
Sbjct: 136 FIGAIYLDQGYRAAKRFVFERLIQEHLNIESVAELEANYKSRLIEWSQKQKISVSFDLID 195

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +F    ++ P F   V I G     G   SK+ ++Q AA E   +
Sbjct: 196 SF-VDENNTPIFKTAVIIMGEQAGLGTGYSKKESQQKAAKEAYNK 239


>gi|330723844|gb|AEC46214.1| Ribonuclease III [Mycoplasma hyorhinis MCLD]
          Length = 225

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 84/148 (56%), Gaps = 5/148 (3%)

Query: 19  NRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           N SL E+A TH S  H    +  YE LEFLGD +L L  S  +F + D+  EG  ++  +
Sbjct: 17  NLSLYEQAFTHKSYHHVRPNKPHYEMLEFLGDSLLNLQTSLYIFKNIDAKNEGNATILRS 76

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
            +VS+ + ++++ +L L+ +++V+    + + +  T I+AD++ESL AA+YLD   +   
Sbjct: 77  QIVSSVSFAKISDKLQLSKYLKVAKGSEEILNN--TKIKADILESLTAAIYLDQDKKTFE 134

Query: 137 TFVDKYWKQRALK-SGKFRRDAKTELQE 163
            FV K       K S K  +D K+E QE
Sbjct: 135 DFVKKILHSLVKKQSKKVIKDPKSEFQE 162


>gi|315606951|ref|ZP_07881957.1| ribonuclease III [Prevotella buccae ATCC 33574]
 gi|315251332|gb|EFU31315.1| ribonuclease III [Prevotella buccae ATCC 33574]
          Length = 371

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 111/230 (48%), Gaps = 18/230 (7%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y++L   IG+   +  L E+AL H S+     +    + ERLEFLGD IL  ++  ++F 
Sbjct: 20  YTSLYDIIGFYPRDIRLYEQALMHKSVMRRNAKGRPVNNERLEFLGDAILDAIVGDIVFK 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF   +EG L+   + LV  +T +++A+E+ ++  I  +        S  + +  +  E+
Sbjct: 80  HFPGKREGFLTNTRSKLVQRDTLNKLAQEMGISQLILSNG----HNSSHNSYLGGNAFEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178
           L+ ALYLD G +    F+ K    + +   K      + K++L EW   K  V  ++K+ 
Sbjct: 136 LVGALYLDRGYDACMKFMQKRILSQMINIDKVAYKEVNFKSKLIEWGQ-KNRVKLDFKL- 193

Query: 179 FRSGPDHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAA---EVLKRE 223
              G D D  P F     I G     G   SK+ ++Q A+    E LKRE
Sbjct: 194 LSQGKDKDGNPMFAYQAVIEGCEGGTGKGYSKKESQQTASKLTLEKLKRE 243


>gi|313763647|gb|EFS35011.1| ribonuclease III [Propionibacterium acnes HL013PA1]
 gi|313773586|gb|EFS39552.1| ribonuclease III [Propionibacterium acnes HL074PA1]
 gi|313794040|gb|EFS42064.1| ribonuclease III [Propionibacterium acnes HL110PA1]
 gi|313801428|gb|EFS42679.1| ribonuclease III [Propionibacterium acnes HL110PA2]
 gi|313811637|gb|EFS49351.1| ribonuclease III [Propionibacterium acnes HL083PA1]
 gi|313813554|gb|EFS51268.1| ribonuclease III [Propionibacterium acnes HL025PA1]
 gi|313816825|gb|EFS54539.1| ribonuclease III [Propionibacterium acnes HL059PA1]
 gi|313829556|gb|EFS67270.1| ribonuclease III [Propionibacterium acnes HL063PA2]
 gi|313831378|gb|EFS69092.1| ribonuclease III [Propionibacterium acnes HL007PA1]
 gi|313834990|gb|EFS72704.1| ribonuclease III [Propionibacterium acnes HL056PA1]
 gi|313839852|gb|EFS77566.1| ribonuclease III [Propionibacterium acnes HL086PA1]
 gi|314914649|gb|EFS78480.1| ribonuclease III [Propionibacterium acnes HL005PA4]
 gi|314919238|gb|EFS83069.1| ribonuclease III [Propionibacterium acnes HL050PA1]
 gi|314920852|gb|EFS84683.1| ribonuclease III [Propionibacterium acnes HL050PA3]
 gi|314930530|gb|EFS94361.1| ribonuclease III [Propionibacterium acnes HL067PA1]
 gi|314957411|gb|EFT01514.1| ribonuclease III [Propionibacterium acnes HL002PA1]
 gi|314963605|gb|EFT07705.1| ribonuclease III [Propionibacterium acnes HL082PA1]
 gi|314968563|gb|EFT12661.1| ribonuclease III [Propionibacterium acnes HL037PA1]
 gi|314974253|gb|EFT18349.1| ribonuclease III [Propionibacterium acnes HL053PA1]
 gi|314976742|gb|EFT20837.1| ribonuclease III [Propionibacterium acnes HL045PA1]
 gi|314984443|gb|EFT28535.1| ribonuclease III [Propionibacterium acnes HL005PA1]
 gi|315079459|gb|EFT51452.1| ribonuclease III [Propionibacterium acnes HL053PA2]
 gi|315081314|gb|EFT53290.1| ribonuclease III [Propionibacterium acnes HL078PA1]
 gi|315095393|gb|EFT67369.1| ribonuclease III [Propionibacterium acnes HL038PA1]
 gi|315099274|gb|EFT71250.1| ribonuclease III [Propionibacterium acnes HL059PA2]
 gi|315100492|gb|EFT72468.1| ribonuclease III [Propionibacterium acnes HL046PA1]
 gi|315109074|gb|EFT81050.1| ribonuclease III [Propionibacterium acnes HL030PA2]
 gi|327328345|gb|EGE70107.1| ribonuclease III [Propionibacterium acnes HL096PA2]
 gi|327334306|gb|EGE76020.1| ribonuclease III [Propionibacterium acnes HL097PA1]
 gi|327444129|gb|EGE90783.1| ribonuclease III [Propionibacterium acnes HL043PA2]
 gi|327444991|gb|EGE91645.1| ribonuclease III [Propionibacterium acnes HL043PA1]
 gi|327451940|gb|EGE98594.1| ribonuclease III [Propionibacterium acnes HL092PA1]
 gi|327455025|gb|EGF01680.1| ribonuclease III [Propionibacterium acnes HL087PA3]
 gi|327457687|gb|EGF04342.1| ribonuclease III [Propionibacterium acnes HL083PA2]
 gi|328755143|gb|EGF68759.1| ribonuclease III [Propionibacterium acnes HL087PA1]
 gi|328758079|gb|EGF71695.1| ribonuclease III [Propionibacterium acnes HL025PA2]
 gi|328760097|gb|EGF73676.1| ribonuclease III [Propionibacterium acnes HL099PA1]
          Length = 265

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/200 (32%), Positives = 99/200 (49%), Gaps = 7/200 (3%)

Query: 22  LLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL+ ALTH S +  +    + ERLEFLGD IL + ++  L+  F    EG+L+   +++V
Sbjct: 53  LLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAFPDKPEGQLAKLRSAVV 112

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
           S  +  Q+AR+L +   I++     +      TSI AD  E+L+ A+ L  G+      V
Sbjct: 113 STVSLGQLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALLGAVELSAGLPDVLRLV 172

Query: 140 DKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
              +      A +SG    D KT LQE+        P Y++   SGPDH+ R+     + 
Sbjct: 173 HHLFDPLVDEADRSGAG-TDWKTVLQEYCAEHGFDAPRYEIVG-SGPDHNRRYCARANVD 230

Query: 197 GLAPAQGMDCSKRAAEQVAA 216
           G   A     +K+ AEQ AA
Sbjct: 231 GRLHAAYTGHNKKEAEQGAA 250


>gi|332706107|ref|ZP_08426179.1| RNAse III [Lyngbya majuscula 3L]
 gi|332355199|gb|EGJ34667.1| RNAse III [Lyngbya majuscula 3L]
          Length = 237

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 92/163 (56%), Gaps = 6/163 (3%)

Query: 19  NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           N SLL+ ALTH SIS   +++YE+LEF+GD ++ L  S  L+ ++ ++  GE +   + L
Sbjct: 28  NWSLLDLALTHCSIS--AEDNYEQLEFVGDAVIRLASSEWLWENYPNSSVGEFAAIRSVL 85

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG-GIEVAGT 137
           VS    SQ+AR   L  ++ VS+    D     TS  AD  E+++ ALYL    +E+   
Sbjct: 86  VSDRILSQLARSYGLERYLLVSNSAAGDKVG-ETSRLADAFEAILGALYLSTHTLELVRP 144

Query: 138 FVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++D + ++    ++    R++ K  LQEW  A + + P+Y +T
Sbjct: 145 WLDPHLQKLTTEIRQDPARQNYKDALQEWTQAHYKLLPKYHLT 187


>gi|257055001|ref|YP_003132833.1| RNAse III [Saccharomonospora viridis DSM 43017]
 gi|256584873|gb|ACU96006.1| RNAse III [Saccharomonospora viridis DSM 43017]
          Length = 250

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/185 (36%), Positives = 95/185 (51%), Gaps = 12/185 (6%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL  ALTH S ++        ERLEFLGD +LGL+++  L+       EG+L+    S+V
Sbjct: 28  LLTLALTHRSYAYENGGLPPNERLEFLGDAVLGLVVTDHLYRQHPDLPEGQLAKLRASVV 87

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSF---MTSIQADVVESLIAALYLDGGIEVAG 136
           +    + VAR L            + +  +      SI AD +E++I A+YL+ GIE A 
Sbjct: 88  NMHALAGVARSLGEGGLGAHLLLGKGEELTGGRDKASILADGLEAVIGAVYLEHGIETAR 147

Query: 137 TFVDKYWKQRALKSGKFRR---DAKTELQEW-AHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
           + V + +  R L     R    D KT LQE  A A  GV PEYKV   +GPDH   F+ V
Sbjct: 148 SLVHRLFG-RLLAEAPRRGAGLDWKTSLQELTASAGLGV-PEYKV-VDTGPDHRKEFSAV 204

Query: 193 VEISG 197
           V ++G
Sbjct: 205 VLVNG 209


>gi|332299505|ref|YP_004441426.1| Ribonuclease 3 [Porphyromonas asaccharolytica DSM 20707]
 gi|332176568|gb|AEE12258.1| Ribonuclease 3 [Porphyromonas asaccharolytica DSM 20707]
          Length = 259

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 105/224 (46%), Gaps = 16/224 (7%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNH 62
           +TL  RIG       L   A+ H S S   +E    + ERLEFLGD +L   I T L+  
Sbjct: 29  TTLFDRIGIVPVRTDLYLLAMRHRSCSIVGEEGEKLNNERLEFLGDAVLEASICTYLYQL 88

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASF-IRVSSDLRKDVCSFMTSIQADVVES 121
             +  EGELS   +SLVS    ++V R L L  + I V S L   V      I  + VE+
Sbjct: 89  HPTWDEGELSKCKSSLVSRPVNNEVGRRLHLERYIIMVPSALDNSV-----DIYGNTVEA 143

Query: 122 LIAALYLDGGIEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           LI A+YLD G      FV  +    ++     +    ++ K+EL EW   K  ++ E+++
Sbjct: 144 LIGAIYLDQGYARTQEFVRDFILPTYRDMQAHTVASIQNYKSELIEWVQ-KHHLSHEFRL 202

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
                  HD  F   V I G    +G   SK+ A+Q AA + LK
Sbjct: 203 EEHEMAPHD-HFIYSVWIDGKPVGRGAGSSKKRAQQEAARDTLK 245


>gi|289426387|ref|ZP_06428130.1| ribonuclease III [Propionibacterium acnes SK187]
 gi|289428762|ref|ZP_06430445.1| ribonuclease III [Propionibacterium acnes J165]
 gi|295130991|ref|YP_003581654.1| ribonuclease III [Propionibacterium acnes SK137]
 gi|289153115|gb|EFD01833.1| ribonuclease III [Propionibacterium acnes SK187]
 gi|289158160|gb|EFD06380.1| ribonuclease III [Propionibacterium acnes J165]
 gi|291376694|gb|ADE00549.1| ribonuclease III [Propionibacterium acnes SK137]
 gi|332675870|gb|AEE72686.1| ribonuclease III [Propionibacterium acnes 266]
          Length = 246

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/200 (32%), Positives = 99/200 (49%), Gaps = 7/200 (3%)

Query: 22  LLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL+ ALTH S +  +    + ERLEFLGD IL + ++  L+  F    EG+L+   +++V
Sbjct: 34  LLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAFPDKPEGQLAKLRSAVV 93

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
           S  +  Q+AR+L +   I++     +      TSI AD  E+L+ A+ L  G+      V
Sbjct: 94  STVSLGQLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALLGAVELSAGLPDVLRLV 153

Query: 140 DKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
              +      A +SG    D KT LQE+        P Y++   SGPDH+ R+     + 
Sbjct: 154 HHLFDPLVDEADRSGAG-TDWKTVLQEYCAEHGFDAPRYEIVG-SGPDHNRRYCARANVD 211

Query: 197 GLAPAQGMDCSKRAAEQVAA 216
           G   A     +K+ AEQ AA
Sbjct: 212 GRLHAAYTGHNKKEAEQGAA 231


>gi|313819677|gb|EFS57391.1| ribonuclease III [Propionibacterium acnes HL046PA2]
 gi|313822217|gb|EFS59931.1| ribonuclease III [Propionibacterium acnes HL036PA1]
 gi|313823550|gb|EFS61264.1| ribonuclease III [Propionibacterium acnes HL036PA2]
 gi|314924611|gb|EFS88442.1| ribonuclease III [Propionibacterium acnes HL036PA3]
 gi|314962025|gb|EFT06126.1| ribonuclease III [Propionibacterium acnes HL002PA2]
 gi|315087196|gb|EFT59172.1| ribonuclease III [Propionibacterium acnes HL002PA3]
          Length = 265

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/200 (32%), Positives = 99/200 (49%), Gaps = 7/200 (3%)

Query: 22  LLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL+ ALTH S +  +    + ERLEFLGD IL + ++  L+  F    EG+L+   +++V
Sbjct: 53  LLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAFPDKPEGQLAKLRSAVV 112

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
           S  +  Q+AR+L +   I++     +      TSI AD  E+L+ A+ L  G+      V
Sbjct: 113 STVSLGQLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALLGAVELSAGLPDVLRLV 172

Query: 140 DKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
              +      A +SG    D KT LQE+        P Y++   SGPDH+ R+     + 
Sbjct: 173 HHLFDPLVDEADRSGAG-TDWKTVLQEYCAEHGFDAPRYEIVG-SGPDHNRRYCARANVD 230

Query: 197 GLAPAQGMDCSKRAAEQVAA 216
           G   A     +K+ AEQ AA
Sbjct: 231 GRLHAAYTGHNKKEAEQGAA 250


>gi|301312334|ref|ZP_07218251.1| ribonuclease III [Bacteroides sp. 20_3]
 gi|300829756|gb|EFK60409.1| ribonuclease III [Bacteroides sp. 20_3]
          Length = 280

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 113/226 (50%), Gaps = 15/226 (6%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y +L K +G+   N  + E+AL H S S    +    + ERLEFLGD IL   ++ +++ 
Sbjct: 24  YLSLSKILGFYPDNLQIYEQALLHKSSSVETDDGKWLNNERLEFLGDGILDAAVADIVYK 83

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + + +EG L+   + +V  ET ++VA +L L   +  S+     + S    +  + +E+
Sbjct: 84  RYPNKREGFLTNTRSKIVQRETMNKVAVQLGLDQMVVYST----KINSHNNHMYGNALEA 139

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVT 178
           LI A+YLD G +V   F+     ++ +      R   + K+ L EW+  K  ++  + + 
Sbjct: 140 LIGAIYLDQGYDVCYKFIRDVMIEKYIDVDTLVRKEINFKSNLIEWSQ-KNKISISFDL- 197

Query: 179 FRSGPDHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             S  DHD  P F   +++ G     G+  SK+ ++Q A+   +KR
Sbjct: 198 IESFTDHDGNPVFQSAIKLLGEQIGIGIGYSKKESQQAASKMAVKR 243


>gi|149371093|ref|ZP_01890688.1| putative ribonuclease III [unidentified eubacterium SCB49]
 gi|149355879|gb|EDM44437.1| putative ribonuclease III [unidentified eubacterium SCB49]
          Length = 247

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 106/216 (49%), Gaps = 12/216 (5%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHF 63
            ++K +G+   + ++ E+A TH S +   +E    +YERLEFLGD +L  +I+  L+   
Sbjct: 21  VIKKLLGFKPKDITIYEEAFTHRSTNEKTREGHAQNYERLEFLGDAMLSAVIAAHLYKKV 80

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG L+   + +VS E  +++ R+L+L   +R +  +++    F  ++  +V ESL+
Sbjct: 81  PGGNEGYLTKMRSKVVSREHLNELGRDLELIKHLRTTIPIKQ----FGGNVHGNVFESLV 136

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA---KTELQEWAHAKFGVTPEYKVTFR 180
            A+YLD G      F++K   +  +   K        K+   EW   K     ++ V   
Sbjct: 137 GAIYLDRGYRYCEKFINKRVIKPYVDIKKLEGKVISYKSLFIEWCQ-KHKSQFKFAVYED 195

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           +G D    F V + +  +   +    SK+ AE++AA
Sbjct: 196 TGNDKLKHFAVKLHLDNVVVGKARATSKKKAEEMAA 231


>gi|288925905|ref|ZP_06419835.1| ribonuclease III [Prevotella buccae D17]
 gi|288337329|gb|EFC75685.1| ribonuclease III [Prevotella buccae D17]
          Length = 370

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 111/230 (48%), Gaps = 18/230 (7%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y++L   IG+   +  L E+AL H S+     +    + ERLEFLGD IL  ++  ++F 
Sbjct: 19  YTSLYDIIGFYPRDIRLYEQALMHKSVMRRNAKGRPVNNERLEFLGDAILDAIVGDIVFK 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF   +EG L+   + LV  +T +++A+E+ ++  I  +        S  + +  +  E+
Sbjct: 79  HFPGKREGFLTNTRSKLVQRDTLNKLAQEMGISQLILSNG----HNSSHNSYLGGNAFEA 134

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178
           L+ ALYLD G +    F+ K    + +   K      + K++L EW   K  V  ++K+ 
Sbjct: 135 LVGALYLDRGYDACMKFMQKRILSQMINIDKVAYKEVNFKSKLIEWGQ-KNRVKLDFKL- 192

Query: 179 FRSGPDHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAA---EVLKRE 223
              G D D  P F     I G     G   SK+ ++Q A+    E LKRE
Sbjct: 193 LSQGKDKDGNPMFAYQAVIEGCEGGTGKGYSKKESQQTASKLTLEKLKRE 242


>gi|88808139|ref|ZP_01123650.1| putative ribonuclease III [Synechococcus sp. WH 7805]
 gi|88788178|gb|EAR19334.1| putative ribonuclease III [Synechococcus sp. WH 7805]
          Length = 269

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 98/201 (48%), Gaps = 6/201 (2%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           L +ALTH+S        +E+LEFLGD +L L  S  +   +     GE S     LVS  
Sbjct: 61  LNEALTHTS--SGLHPHHEQLEFLGDAVLRLAASEFIAVAYPQMPVGERSSLRAQLVSDR 118

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
             +Q+   + +  + R+      D  +  T I+A++ E+LI A+Y   G++   T++  +
Sbjct: 119 WLTQLGEAITIEEWWRIGPKASGDPTAAAT-IRAELSEALIGAMYRIAGLQAVQTWLTPH 177

Query: 143 WKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISGLA 199
           W++   A+ +   R ++K+ LQEW+  +    P Y  +  S    DP RF   V +    
Sbjct: 178 WQRSAEAVLADPHRGNSKSALQEWSQGRGLGLPRYACSEVSQRHGDPKRFQASVTLPPDL 237

Query: 200 PAQGMDCSKRAAEQVAAAEVL 220
            A G   S+R AEQ AA  ++
Sbjct: 238 AADGWGGSRREAEQQAAEALM 258


>gi|332881433|ref|ZP_08449083.1| ribonuclease III [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332680809|gb|EGJ53756.1| ribonuclease III [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 297

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 110/227 (48%), Gaps = 22/227 (9%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY---ERLEFLGDRILGLLISTLLFNH 62
           YS+  K +G+   +    E+AL H S S   Q S+   ERLEFLGD IL  ++  ++F H
Sbjct: 21  YSSFYKILGFYPHHIQYYEQALHHKSSSIKKQGSWINNERLEFLGDAILDAVVGDIVFRH 80

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F   +EG L+   + +V  ET +++A E+ L   I +SS       S+M     +  E++
Sbjct: 81  FKGKREGFLTNTRSKIVQRETLNRLAVEIGLDKLI-ISSTHSSTHNSYMC---GNAFEAM 136

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVTF 179
           + A+YLD G      F+ K    + +   K      + K++L EW   +       ++TF
Sbjct: 137 VGAIYLDRGYSYCMRFIGKRIMTQLINIDKLAYKEVNFKSKLIEWGQKR-----RVEITF 191

Query: 180 ------RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                 R G    P FT  + I G+   +G   SK+ ++Q+AA + L
Sbjct: 192 DLIDQAREGSS-TPVFTTQITIEGVTCCKGRGYSKKESQQLAAKDTL 237


>gi|313807892|gb|EFS46373.1| ribonuclease III [Propionibacterium acnes HL087PA2]
 gi|313825876|gb|EFS63590.1| ribonuclease III [Propionibacterium acnes HL063PA1]
 gi|314986461|gb|EFT30553.1| ribonuclease III [Propionibacterium acnes HL005PA2]
 gi|314990820|gb|EFT34911.1| ribonuclease III [Propionibacterium acnes HL005PA3]
 gi|315083515|gb|EFT55491.1| ribonuclease III [Propionibacterium acnes HL027PA2]
 gi|327329789|gb|EGE71545.1| ribonuclease III [Propionibacterium acnes HL096PA3]
 gi|327446474|gb|EGE93128.1| ribonuclease III [Propionibacterium acnes HL013PA2]
 gi|328752230|gb|EGF65846.1| ribonuclease III [Propionibacterium acnes HL020PA1]
          Length = 265

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/200 (32%), Positives = 99/200 (49%), Gaps = 7/200 (3%)

Query: 22  LLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL+ ALTH S +  +    + ERLEFLGD IL + ++  L+  F    EG+L+   +++V
Sbjct: 53  LLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAFPDKPEGQLAKLRSAVV 112

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
           S  +  Q+AR+L +   I++     +      TSI AD  E+L+ A+ L  G+      V
Sbjct: 113 STVSLGQLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALLGAVELSAGLPDVLRLV 172

Query: 140 DKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
              +      A +SG    D KT LQE+        P Y++   SGPDH+ R+     + 
Sbjct: 173 HHLFDPLVDEADRSGAG-TDWKTVLQEYCAEHGFDAPRYEIVG-SGPDHNRRYCARANVD 230

Query: 197 GLAPAQGMDCSKRAAEQVAA 216
           G   A     +K+ AEQ AA
Sbjct: 231 GRLHAAYTGHNKKEAEQGAA 250


>gi|183981795|ref|YP_001850086.1| ribonuclease III Rnc [Mycobacterium marinum M]
 gi|183175121|gb|ACC40231.1| ribonuclease III Rnc [Mycobacterium marinum M]
          Length = 241

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/188 (35%), Positives = 95/188 (50%), Gaps = 20/188 (10%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           L+  ALTH S ++      + ERLEFLGD +LGL I+  LF+      EG+L+    S+V
Sbjct: 18  LVTLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDELFHRHPERSEGDLAKLRASVV 77

Query: 80  SAETCSQVARELD---LASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA- 135
           + +  + VAR L    L + + +         +  +SI AD +ESL+ A+YL  G+EVA 
Sbjct: 78  NTQALADVARHLSEHGLGAHMLLGRGEANTGGADKSSILADGMESLLGAIYLHHGMEVAR 137

Query: 136 -------GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
                  G  +D       L +G    D KT LQE   ++    P Y VT  +GPDH   
Sbjct: 138 EAILRIFGPLLD---AAPTLGAG---LDWKTSLQELTASRSLGAPSYAVT-STGPDHHKE 190

Query: 189 FTVVVEIS 196
           FT VV ++
Sbjct: 191 FTAVVVVN 198


>gi|255027417|ref|ZP_05299403.1| ribonuclease III [Listeria monocytogenes FSL J2-003]
          Length = 151

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 78/141 (55%), Gaps = 4/141 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++  L++ +G+ F +  LL++A THSS  + ++    +  ERLEFLGD +L L +S  LF
Sbjct: 3   QWEELQESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N +    EG ++    ++V   +  + A  +  + ++R+     K       ++ ADV E
Sbjct: 63  NKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFE 122

Query: 121 SLIAALYLDGGIEVAGTFVDK 141
           S I ALYLD GI+   TF+++
Sbjct: 123 SFIGALYLDNGIDKVVTFLER 143


>gi|313836649|gb|EFS74363.1| ribonuclease III [Propionibacterium acnes HL037PA2]
 gi|314928156|gb|EFS91987.1| ribonuclease III [Propionibacterium acnes HL044PA1]
 gi|314972155|gb|EFT16252.1| ribonuclease III [Propionibacterium acnes HL037PA3]
 gi|328907982|gb|EGG27742.1| ribonuclease III [Propionibacterium sp. P08]
          Length = 259

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/200 (32%), Positives = 99/200 (49%), Gaps = 7/200 (3%)

Query: 22  LLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL+ ALTH S +  +    + ERLEFLGD IL + ++  L+  F    EG+L+   +++V
Sbjct: 47  LLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAFPDKPEGQLAKLRSAVV 106

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
           S  +  Q+AR L +   +++     +      TSI AD  E+L+ A+ L  G+  A   V
Sbjct: 107 STVSLGQLARRLGIGPQVKLGRGEERTGGHDKTSILADTTEALLGAVELSSGLPDALRLV 166

Query: 140 DKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
              +      A +SG    D KT LQE+        P Y++   SGPDH+ R+     + 
Sbjct: 167 HHLFDPLVDEADRSGAG-TDWKTVLQEYCAEHGFDAPRYEIVG-SGPDHNRRYCARANVD 224

Query: 197 GLAPAQGMDCSKRAAEQVAA 216
           G   A     +K+ AEQ AA
Sbjct: 225 GRLHAAYTGHNKKEAEQGAA 244


>gi|260578984|ref|ZP_05846886.1| ribonuclease III [Corynebacterium jeikeium ATCC 43734]
 gi|258602849|gb|EEW16124.1| ribonuclease III [Corynebacterium jeikeium ATCC 43734]
          Length = 244

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 99/205 (48%), Gaps = 6/205 (2%)

Query: 22  LLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL  ALTH S ++   +  + ERLEFLGD +LGL ++  L+  F    E ++S   + +V
Sbjct: 37  LLRLALTHRSFANENGHLPNNERLEFLGDAVLGLAVAEQLYRQFPERAESDISKMRSGVV 96

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
           +    + VAR L +  +I +             SI AD VES++ A+YL  G +VA   V
Sbjct: 97  NMYALADVARHLGMGDYILLGRGEMLTGGKDKHSILADSVESMLGAIYLHHGFDVARATV 156

Query: 140 DKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197
            + + ++  ++       D KT L E         P Y+V    GP+HD  F   V I  
Sbjct: 157 LRLFAEKITEAPTTGLTMDWKTVLLEKLSDMKLPLPTYEVR-GEGPEHDKTFYATVTIED 215

Query: 198 LAPAQGMDCSKRAAEQVAAAEVLKR 222
           L    G   +K+ AE  AA + +++
Sbjct: 216 LV-THGEGHTKKVAEHAAAKQAVQK 239


>gi|194757473|ref|XP_001960989.1| GF13644 [Drosophila ananassae]
 gi|190622287|gb|EDV37811.1| GF13644 [Drosophila ananassae]
          Length = 1303

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 106/225 (47%), Gaps = 17/225 (7%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +  E+ IG  F +  LL +A T  SI  +H    S +RLEFLGD +L L+ S  L+ HF 
Sbjct: 956  TKFEESIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRHFP 1015

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
               EG LS+  +SLV+  T + V  +L +  +    +DL+       T  +AD++E+ + 
Sbjct: 1016 EHHEGHLSLLRSSLVNNRTQAVVCDDLGMPQYANPKADLK-------TKDRADLLEAFLG 1068

Query: 125  ALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV------TPEYK 176
            ALY+D G+     F  V  + + +     +   D K++LQ+       +       P YK
Sbjct: 1069 ALYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPYYK 1128

Query: 177  VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V   SGP +   + V V       A     S + AE  AA + L+
Sbjct: 1129 VVEASGPTNTRVYKVAVYFRSKRLATSNGSSIQQAEMNAAKQALE 1173



 Score = 48.5 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 10/121 (8%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
           T S+I+H+     ERLEFLGD ++  L S  LF  F   +EG L+    ++V  +  + +
Sbjct: 805 TVSNITHN-----ERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALL 859

Query: 88  ARELDLASFIRVSSDLRKDVCSFMT--SIQADVVESLIAALYLDGGIEVAG-TFVDKYWK 144
           A++L L  F+  +     D+C  +      A+  E+L+ AL LDGGI+VA   F D  ++
Sbjct: 860 AKKLQLEEFMLYAHG--SDLCHELELRHAMANCFEALMGALLLDGGIKVADEVFTDALFR 917

Query: 145 Q 145
           Q
Sbjct: 918 Q 918


>gi|118617606|ref|YP_905938.1| ribonuclease III [Mycobacterium ulcerans Agy99]
 gi|118569716|gb|ABL04467.1| ribonuclease III Rnc [Mycobacterium ulcerans Agy99]
          Length = 243

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/188 (35%), Positives = 95/188 (50%), Gaps = 20/188 (10%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           L+  ALTH S ++      + ERLEFLGD +LGL I+  LF+      EG+L+    S+V
Sbjct: 20  LVTLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDELFHRHPERSEGDLAKLRASVV 79

Query: 80  SAETCSQVARELD---LASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA- 135
           + +  + VAR L    L + + +         +  +SI AD +ESL+ A+YL  G+EVA 
Sbjct: 80  NTQALADVARHLSDHGLGAHMLLGRGEANTGGADKSSILADGMESLLGAIYLHHGMEVAR 139

Query: 136 -------GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
                  G  +D       L +G    D KT LQE   ++    P Y VT  +GPDH   
Sbjct: 140 EAILRIFGPLLD---AAPTLGAG---LDWKTSLQELTASRSLGAPSYAVT-STGPDHHKE 192

Query: 189 FTVVVEIS 196
           FT VV ++
Sbjct: 193 FTAVVVVN 200


>gi|225012041|ref|ZP_03702478.1| Ribonuclease III [Flavobacteria bacterium MS024-2A]
 gi|225003596|gb|EEG41569.1| Ribonuclease III [Flavobacteria bacterium MS024-2A]
          Length = 236

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 78/138 (56%), Gaps = 8/138 (5%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           L+K++     N+ L +KA THSS++   +E    ++ERLEFLGD +L  +++  LFN   
Sbjct: 11  LQKKLNIRTRNKELYKKAFTHSSVNLKDKEGNTINFERLEFLGDALLSTIVAEYLFNFHP 70

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            AKEGEL+     +VS    + + +++ L     +SS  +    +F  +I  +++ESLI 
Sbjct: 71  EAKEGELTKLRAKIVSRSQLNSIGKQMGLFELADISSHHK----TFGENIHGNLIESLIG 126

Query: 125 ALYLDGGIEVAGTFVDKY 142
           AL++D G      +V KY
Sbjct: 127 ALFIDKGYNKTKDYVLKY 144


>gi|329120775|ref|ZP_08249436.1| ribonuclease III [Neisseria bacilliformis ATCC BAA-1200]
 gi|327460145|gb|EGF06483.1| ribonuclease III [Neisseria bacilliformis ATCC BAA-1200]
          Length = 316

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 107/217 (49%), Gaps = 7/217 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L+  IG+ FA+ +LL++ALTH S S  + E   R EF+GD IL   ++ +LF+ +    E
Sbjct: 87  LQAAIGHTFADPALLDRALTHRSFSSRHNE---RFEFVGDAILNYTVARMLFDAYPQLPE 143

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G LS    +LV+    ++ A  L++   + + +   K       SI AD +E++ AA+  
Sbjct: 144 GRLSRLRANLVNQTVLAETAAALNIGDALLLGAGELKSGGFRRPSILADAMEAVFAAVSF 203

Query: 129 DGGIEVAGTFVDKYWKQRALK---SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           D     A   V + + +R        K  +DAKT LQE   A+    P+Y++  + G   
Sbjct: 204 DADFAAAEAVVRRLFAERVANIDCGEKEAKDAKTRLQEALQAQRFALPKYRIDKQEGEGS 263

Query: 186 DPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221
              FTV  ++  L   +      +RAAEQ AA   L+
Sbjct: 264 GAWFTVSCDLGELGFVSTAQAAGRRAAEQEAAKTALE 300


>gi|331698524|ref|YP_004334763.1| Ribonuclease 3 [Pseudonocardia dioxanivorans CB1190]
 gi|326953213|gb|AEA26910.1| Ribonuclease 3 [Pseudonocardia dioxanivorans CB1190]
          Length = 238

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/207 (34%), Positives = 100/207 (48%), Gaps = 16/207 (7%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL  ALTH S ++      + ERLEFLGD +L ++++  L+       EG+L+    S+V
Sbjct: 19  LLTLALTHRSYAYENGGLPTNERLEFLGDSVLSIVVTERLYLDHPDLPEGQLAKLRASVV 78

Query: 80  SAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE--- 133
           +    + VA EL    L + + +             SI AD  E+LI A+YL  G+E   
Sbjct: 79  NMNALAGVAAELVPDGLGAHLFLGRGEELTGGRAKASILADATEALIGAVYLQHGLETSR 138

Query: 134 --VAGTFVDKYWKQRALKSGKFRRDAKTELQEW-AHAKFGVTPEYKVTFRSGPDHDPRFT 190
             +   F D       L +G    D KT LQE  A A+ GV PEY++T   GPDH   FT
Sbjct: 139 DVIHRLFADLLRNAPLLGAG---LDWKTSLQELTAAAELGV-PEYRIT-EDGPDHLKTFT 193

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAA 217
               + G     G   +K+ AEQ AAA
Sbjct: 194 ATAVVGGRELGSGDGRTKKEAEQKAAA 220


>gi|75907020|ref|YP_321316.1| ribonuclease III [Anabaena variabilis ATCC 29413]
 gi|75700745|gb|ABA20421.1| RNAse III [Anabaena variabilis ATCC 29413]
          Length = 242

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 88/160 (55%), Gaps = 6/160 (3%)

Query: 22  LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
           LL+ ALTH ++S S   +YE+LEF+GD ++ L  + +L+  +     G+ +   + LVS 
Sbjct: 31  LLDLALTHPTVSES--ANYEQLEFVGDAVVRLAAAVMLWETYPDCPVGDFAAIRSVLVSD 88

Query: 82  ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIEVAGTFVD 140
              +Q+ARE  L   + V+     D     + + AD  E+++ ALYL    +E+   ++D
Sbjct: 89  RILAQLAREYGLELHLLVAGSATSDKIGQESRL-ADAFEAVLGALYLSTSNLELIRPWLD 147

Query: 141 KYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
            +++Q A  ++    R + K  LQEW  A+F V PEY+V 
Sbjct: 148 HHFRQLAAEIRLDPARLNYKAALQEWTQAQFKVLPEYRVV 187


>gi|256419408|ref|YP_003120061.1| ribonuclease III [Chitinophaga pinensis DSM 2588]
 gi|256034316|gb|ACU57860.1| ribonuclease III [Chitinophaga pinensis DSM 2588]
          Length = 253

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 110/228 (48%), Gaps = 17/228 (7%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y  L   +G+A  N SL E AL+H S    + ES ERLE+LGD ILG +I   LF  +  
Sbjct: 32  YKDLYNLLGFAPGNFSLYEVALSHRSSKEKFLESNERLEYLGDAILGAIIGDYLFKKYPY 91

Query: 66  AKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
             EG L+   + +V+ +  + +A ++    L  + + +S L+      ++ I  + +E+L
Sbjct: 92  KTEGYLTEMRSKIVNRQQLNDIAIKMGLRKLTIYDKYNSFLK------ISQIFGNTLEAL 145

Query: 123 IAALYLDGGIEVAGTFVDK-----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           + A+YLD G      FV +     Y     L++     + K +L  WA+ K G T E+ +
Sbjct: 146 VGAVYLDKGYNRTKQFVHQRLIVPYIDLEQLEN--VEMNHKNKLYGWAN-KHGKTLEFDL 202

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
                 +    FTV   + G     G   +K+ A Q+AA + ++  G+
Sbjct: 203 LEEQMDNGRRIFTVGAVVDGELICSGKAFNKKDASQIAAQQAIELLGL 250


>gi|86134672|ref|ZP_01053254.1| ribonuclease III [Polaribacter sp. MED152]
 gi|85821535|gb|EAQ42682.1| ribonuclease III [Polaribacter sp. MED152]
          Length = 245

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 110/226 (48%), Gaps = 22/226 (9%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61
           Y  L+  + ++    S  +KA TH S+    S     +YERLEFLGD ILG +I++ L+ 
Sbjct: 19  YFELKTLLNFSPKKISKYKKAFTHRSVQMTDSKGNPINYERLEFLGDSILGSVIASYLYK 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
              +  EG L+   + +VS E  +++ ++L+L  F++ + D      +   +I  ++ E+
Sbjct: 79  KVPTGSEGYLTQMRSKIVSREHLNELGKDLELIRFVKSNIDQN----TVGDNIHGNIFEA 134

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR------DAKTELQEWAHAKFGVTPEY 175
           L+ A+YLD G   A  F+   ++   L      R        K  + EW   +     +Y
Sbjct: 135 LVGAIYLDRGYNYAQKFI---YENVILPYVNIERLEGKITSYKGLIIEWCQKQ---KKKY 188

Query: 176 KV-TFR-SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           K  T+  SG +    F+V V I G   A+G   SK+ AE+ A+  V
Sbjct: 189 KFETYEDSGNEAIKHFSVKVSIDGEQVAKGRATSKKKAEEQASKRV 234


>gi|150024312|ref|YP_001295138.1| ribonuclease III [Flavobacterium psychrophilum JIP02/86]
 gi|149770853|emb|CAL42318.1| Ribonuclease III [Flavobacterium psychrophilum JIP02/86]
          Length = 246

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 107/221 (48%), Gaps = 12/221 (5%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTL 58
            L +S LEK +G+   N +   +A TH S++   ++    +YERLEF+GD +LG +I+  
Sbjct: 17  GLFFSKLEKILGFKPLNLTHFRRAFTHRSMNKLDEKGNPMNYERLEFMGDAMLGSVIAAH 76

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LFN   +  EG L+   + +VS E  +++ ++L+L  F+     L+    +F  +I  ++
Sbjct: 77  LFNMSPTGDEGYLTKMRSKIVSREHLNELGKDLNLIQFLESKVTLQ----NFGENIHGNL 132

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA---KTELQEWAHAKFGVTPEY 175
            E+ + A+YLD G      F+ K   +  +   K        K+ L EW   +  V   Y
Sbjct: 133 FEAFVGAIYLDRGFVYCEKFIHKKVIKPYVDIDKLEGKVISYKSLLIEWCQKEKRVF-HY 191

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            +           F V + I G   A+    SK+ AE++A+
Sbjct: 192 DIYEDEDAGKLKYFGVKLSIDGKVVAKARATSKKKAEEIAS 232


>gi|304373283|ref|YP_003856492.1| Ribonuclease III [Mycoplasma hyorhinis HUB-1]
 gi|304309474|gb|ADM21954.1| Ribonuclease III [Mycoplasma hyorhinis HUB-1]
          Length = 225

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 83/146 (56%), Gaps = 5/146 (3%)

Query: 21  SLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           SL E+A TH S  H    +  YE LEFLGD +L L  S  +F + D+  EG  ++  + +
Sbjct: 19  SLYEQAFTHKSYHHVRPNKPHYEMLEFLGDSLLNLQTSLYIFKNIDAKNEGNATILRSQI 78

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138
           VS+ + ++++ +L L+ +++V+    + + +  T I+AD++ESL AA+YLD   +    F
Sbjct: 79  VSSVSFAKISEKLQLSKYLKVAKGSEEILNN--TKIKADILESLTAAIYLDQDKKTFEDF 136

Query: 139 VDKYWKQRALK-SGKFRRDAKTELQE 163
           V K       K S K  +D K+E QE
Sbjct: 137 VKKILHSLVKKQSKKVIKDPKSEFQE 162


>gi|256842428|ref|ZP_05547931.1| ribonuclease III [Parabacteroides sp. D13]
 gi|262384660|ref|ZP_06077793.1| ribonuclease III [Bacteroides sp. 2_1_33B]
 gi|256736035|gb|EEU49366.1| ribonuclease III [Parabacteroides sp. D13]
 gi|262293641|gb|EEY81576.1| ribonuclease III [Bacteroides sp. 2_1_33B]
          Length = 280

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 113/227 (49%), Gaps = 17/227 (7%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y +L K +G+   N  + E+AL H S S    +    + ERLEFLGD IL   ++ +++ 
Sbjct: 24  YLSLSKILGFYPDNLQIYEQALLHKSSSVETGDGKWLNNERLEFLGDGILDAAVADIVYK 83

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + + +EG L+   + +V  ET ++VA +L L   +  S+     + S    +  + +E+
Sbjct: 84  RYPNKREGFLTNTRSKIVQRETMNKVAVQLGLDQMVVYST----KINSHNNHMYGNALEA 139

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKV 177
           LI A+YLD G +V   F+     ++ +      R   + K+ L EW+   K  ++ +   
Sbjct: 140 LIGAIYLDQGYDVCYKFIRDVMIEKYIDVDMLVRKEINFKSNLIEWSQKNKISISFDLIE 199

Query: 178 TFRSGPDHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +F    DHD  P F   +++ G     G+  SK+ ++Q A+   +KR
Sbjct: 200 SF---TDHDGNPVFQSAIKLLGEQIGIGIGYSKKESQQAASKMAVKR 243


>gi|150009420|ref|YP_001304163.1| ribonuclease III [Parabacteroides distasonis ATCC 8503]
 gi|298377793|ref|ZP_06987743.1| ribonuclease III [Bacteroides sp. 3_1_19]
 gi|149937844|gb|ABR44541.1| ribonuclease III [Parabacteroides distasonis ATCC 8503]
 gi|298265239|gb|EFI06902.1| ribonuclease III [Bacteroides sp. 3_1_19]
          Length = 280

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 113/226 (50%), Gaps = 15/226 (6%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y +L K +G+   N  + E+AL H S S    +    + ERLEFLGD IL   ++ +++ 
Sbjct: 24  YLSLSKILGFYPDNLQIYEQALLHKSSSVETGDGKWLNNERLEFLGDGILDAAVADIVYK 83

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + + +EG L+   + +V  ET ++VA +L L   +  S+     + S    +  + +E+
Sbjct: 84  RYPNKREGFLTNTRSKIVQRETMNKVAVQLGLDQMVVYST----KINSHNNHMYGNALEA 139

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVT 178
           LI A+YLD G +V   F+     ++ +      R   + K+ L EW+  K  ++  + + 
Sbjct: 140 LIGAIYLDQGYDVCYKFIRDVMIEKYIDVDMLVRKEINFKSNLIEWSQ-KNKISISFDL- 197

Query: 179 FRSGPDHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             S  DHD  P F   +++ G     G+  SK+ ++Q A+   +KR
Sbjct: 198 IESFTDHDGNPVFQSAIKLLGEQIGIGIGYSKKESQQAASKMAVKR 243


>gi|321475336|gb|EFX86299.1| hypothetical protein DAPPUDRAFT_442 [Daphnia pulex]
          Length = 939

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 107/225 (47%), Gaps = 16/225 (7%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66
            E+ IG  F +  LL +A T  SI  +     S +RLEFLGD +L L+ S  L+  F   
Sbjct: 704 FEESIGIKFTHIRLLARAFTDRSIGFNNLTLGSNQRLEFLGDTVLQLIASEYLYKFFPEH 763

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG LS+  +SLV+  T + V  +L + ++   SS          T  +AD++E+ + AL
Sbjct: 764 HEGHLSLLRSSLVNNRTQAVVCDDLGMTNYALYSS----PKAELKTKDRADLLEAFLGAL 819

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGV------TPEYKV 177
           Y+D G+E   TF    +  R L+     +   D K++LQ+       +       P YKV
Sbjct: 820 YVDKGLEDCQTFCQVCFFPR-LQDFILHQDWNDPKSKLQQCCLTLRTMDGGEPDIPVYKV 878

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
               GP +   ++V V   G+  A     S + AE  AA E L++
Sbjct: 879 IECKGPTNTRVYSVAVYFRGIRLASASGHSIQQAEMNAAKEALEK 923



 Score = 65.5 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 44/116 (37%), Positives = 67/116 (57%), Gaps = 9/116 (7%)

Query: 22  LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
           L +K  T SSI+H+     ERLEFLGD ++  L S  L++ F   +EG L+    ++V  
Sbjct: 545 LGKKQETESSITHN-----ERLEFLGDAVVEFLASIHLYHMFPDLEEGGLATYRAAIVQN 599

Query: 82  ETCSQVARELDLASFIRVS--SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
           +  +Q+A+ L L  F+  +  SDL  D+   +    A+  E+L+ AL+LDGGI VA
Sbjct: 600 QHLAQLAKNLQLDQFMLYAHGSDLCHDL--ELRHAMANCFEALMGALFLDGGINVA 653


>gi|73662845|ref|YP_301626.1| ribonuclease III [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
 gi|90101648|sp|Q49X17|RNC_STAS1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|72495360|dbj|BAE18681.1| dsRNA-specific ribonuclease RNase III [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 244

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 99/219 (45%), Gaps = 11/219 (5%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + +   F    L ++A +HSS  + +     +  ERLEFLGD +L L +S  LF+ +   
Sbjct: 22  QELNLDFNRVDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLFDKYPEL 81

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG L+    ++V   +    A ++ L   I +     K       S+ +D  E+ + AL
Sbjct: 82  PEGNLTKMRATIVCEPSLVIFANKIQLNDLILLGKGEEKTGGRTRPSLVSDAFEAFVGAL 141

Query: 127 YLDGGIEVAGTFVDK----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           YLD G+E    F ++    Y +   L       D KT+ QE+ H +      Y++    G
Sbjct: 142 YLDQGLEAVWQFSEQIIFPYVEDDELDG---VVDFKTQFQEYVHRQNKGDVTYRLINEEG 198

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           P H   FT  V +   A A+G   +K+ +EQ AA    K
Sbjct: 199 PAHHRLFTSEVILEEDAVAEGKGKTKKESEQKAAERAYK 237


>gi|265752863|ref|ZP_06088432.1| ribonuclease 3 [Bacteroides sp. 3_1_33FAA]
 gi|263236049|gb|EEZ21544.1| ribonuclease 3 [Bacteroides sp. 3_1_33FAA]
          Length = 308

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 114/219 (52%), Gaps = 13/219 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y    K +G+   + S+ E+AL H S+S   ++    + ERLEFLGD IL  +++ +++ 
Sbjct: 20  YFRFYKMLGFYPKDISIYEQALLHKSLSVKSEKGRLLNNERLEFLGDAILDAVVADIVYK 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F+  +EG L+   + +V  ET +++A E+ L   I+ ++  +    S+M     +  E+
Sbjct: 80  RFEGKREGFLTNTRSKIVQRETLNRLAIEIGLDKLIKYTAR-QSSHNSYMC---GNAFEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKV 177
           L+ A+YLD G      F++       +   K  R   + K++L EW+   +F VT E  +
Sbjct: 136 LVGAIYLDRGYRACKYFMEHRIIGSYINLEKISRKEVNFKSKLIEWSQKNRFEVTFEL-I 194

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           T      ++P F   V + G++  +G   SK+ ++Q+AA
Sbjct: 195 TQSHDQGYNPTFESEVLVEGISGGKGTGYSKKESQQMAA 233


>gi|150003618|ref|YP_001298362.1| putative ribonuclease III [Bacteroides vulgatus ATCC 8482]
 gi|189043292|sp|A6KZ76|RNC_BACV8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|149932042|gb|ABR38740.1| putative ribonuclease III [Bacteroides vulgatus ATCC 8482]
          Length = 308

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 114/219 (52%), Gaps = 13/219 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y    K +G+   + S+ E+AL H S+S   ++    + ERLEFLGD IL  +++ +++ 
Sbjct: 20  YLRFYKMLGFYPKDISIYEQALLHKSLSVKSEKGRLLNNERLEFLGDAILDAVVADIVYK 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F+  +EG L+   + +V  ET +++A E+ L   I+ ++  +    S+M     +  E+
Sbjct: 80  RFEGKREGFLTNTRSKIVQRETLNRLAIEIGLDKLIKYTAR-QSSHNSYMC---GNAFEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKV 177
           L+ A+YLD G      F++       +   K  R   + K++L EW+   +F VT E  +
Sbjct: 136 LVGAIYLDRGYRACKYFMEHRIIGPYINLEKISRKEVNFKSKLIEWSQKNRFEVTFEL-I 194

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           T      ++P F   V + G++  +G   SK+ ++Q+AA
Sbjct: 195 TQSHDQGYNPTFESEVLVEGISGGKGTGYSKKESQQMAA 233


>gi|157119283|ref|XP_001653338.1| ribonuclease iii [Aedes aegypti]
 gi|108875392|gb|EAT39617.1| ribonuclease iii [Aedes aegypti]
          Length = 1374

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 112/225 (49%), Gaps = 14/225 (6%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64
            +  E  IG  F +  LL +A T  SI  +     S +RLEFLGD +L L+ S  L+ HF 
Sbjct: 946  TKFEDAIGVNFNHIRLLARAFTDRSIGFTNLTLGSNQRLEFLGDTVLQLICSEYLYRHFP 1005

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
               EG LS+  +SLV+  T + V  +L + ++  V S+ + D+    T  +AD++E+ + 
Sbjct: 1006 EHHEGHLSLLRSSLVNNRTQAVVCDDLGMTTYA-VYSNPKADL---KTKDRADLLEAFLG 1061

Query: 125  ALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWA---HAKFGVTPE---YK 176
            ALY+D G+E   TF  V  + + +     +   D K++LQ+         G  P+   YK
Sbjct: 1062 ALYVDKGLEHCETFCHVCLFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPIYK 1121

Query: 177  VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V   +GP +   +TV V   G   A     S + AE  AA + L+
Sbjct: 1122 VIECNGPTNTRVYTVAVYFRGKRLACSNGHSIQQAEMNAAKKALE 1166



 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 60/110 (54%), Gaps = 9/110 (8%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
           T S+I+H+     ERLEFLGD ++  + S  LF+ F   +EG L+    ++V  +  + +
Sbjct: 795 TDSNITHN-----ERLEFLGDAVVEFITSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVL 849

Query: 88  ARELDLASFIRVSSDLRKDVCSFMT--SIQADVVESLIAALYLDGGIEVA 135
           A+ L L  F+  +     D+C  +      A+  E+L+ AL LDGGIE A
Sbjct: 850 AKTLHLEEFMLYAHG--SDLCHELELRHALANCFEALMGALLLDGGIETA 897


>gi|212692274|ref|ZP_03300402.1| hypothetical protein BACDOR_01770 [Bacteroides dorei DSM 17855]
 gi|237726085|ref|ZP_04556566.1| ribonuclease 3 [Bacteroides sp. D4]
 gi|212665151|gb|EEB25723.1| hypothetical protein BACDOR_01770 [Bacteroides dorei DSM 17855]
 gi|229435893|gb|EEO45970.1| ribonuclease 3 [Bacteroides dorei 5_1_36/D4]
          Length = 308

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 114/219 (52%), Gaps = 13/219 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y    K +G+   + S+ E+AL H S+S   ++    + ERLEFLGD IL  +++ +++ 
Sbjct: 20  YFRFYKMLGFYPKDISIYEQALLHKSLSVKSEKGRLLNNERLEFLGDAILDAVVADIVYK 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F+  +EG L+   + +V  ET +++A E+ L   I+ ++  +    S+M     +  E+
Sbjct: 80  RFEGKREGFLTNTRSKIVQRETLNRLAIEIGLDKLIKYTAR-QSSHNSYMC---GNAFEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKV 177
           L+ A+YLD G      F++       +   K  R   + K++L EW+   +F VT E  +
Sbjct: 136 LVGAIYLDRGYRACKYFMEHRIIGSYINLEKISRKEVNFKSKLIEWSQKNRFEVTFEL-I 194

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           T      ++P F   V + G++  +G   SK+ ++Q+AA
Sbjct: 195 TQSHDQGYNPTFESEVLVEGISGGKGTGYSKKESQQMAA 233


>gi|213963479|ref|ZP_03391733.1| ribonuclease III [Capnocytophaga sputigena Capno]
 gi|213953887|gb|EEB65215.1| ribonuclease III [Capnocytophaga sputigena Capno]
          Length = 252

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 102/219 (46%), Gaps = 15/219 (6%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           Y+ ++  +G+A  N S   +A TH S     + ++SYERLEFLGD ILG +I+  +F + 
Sbjct: 23  YNKIKNLLGFAPKNLSYYSEAFTHPSYQFQKATRKSYERLEFLGDAILGAVIADYIFTNA 82

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG L+   + +V     +Q+ +++ L  F+R     R+       +I  ++ E+LI
Sbjct: 83  PEQDEGYLTKMRSKIVERRNLNQLGKDMGLLDFLRTKLTPRQ----LGNNITGNLFEALI 138

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA---KTELQEWAHAK---FGVTPEYKV 177
            A+YLD G +    F+++      +            K+ L EW       F    E  +
Sbjct: 139 GAIYLDRGYKACFRFIERELILPHINIKNLEGKVISHKSLLIEWCQKHKLDFAFEAEEDM 198

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             RS   +   F   V + G +  +    SK+ AE++AA
Sbjct: 199 EDRSETKY---FVAKVHVQGFSVTRARSTSKKKAEEIAA 234


>gi|254881153|ref|ZP_05253863.1| ribonuclease III [Bacteroides sp. 4_3_47FAA]
 gi|294777572|ref|ZP_06743023.1| ribonuclease III [Bacteroides vulgatus PC510]
 gi|254833946|gb|EET14255.1| ribonuclease III [Bacteroides sp. 4_3_47FAA]
 gi|294448640|gb|EFG17189.1| ribonuclease III [Bacteroides vulgatus PC510]
          Length = 308

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 114/219 (52%), Gaps = 13/219 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y    K +G+   + S+ E+AL H S+S   ++    + ERLEFLGD IL  +++ +++ 
Sbjct: 20  YLRFYKMLGFYPKDISIYEQALLHKSLSVKSEKGRLLNNERLEFLGDAILDAVVADIVYK 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F+  +EG L+   + +V  ET +++A E+ L   I+ ++  +    S+M     +  E+
Sbjct: 80  RFEGKREGFLTNTRSKIVQRETLNRLAIEIGLDKLIKYTAR-QSSHNSYMC---GNAFEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKV 177
           L+ A+YLD G      F++       +   K  R   + K++L EW+   +F VT E  +
Sbjct: 136 LVGAIYLDRGYRACKYFMEHRIIGPYINLEKISRKEVNFKSKLIEWSQKNRFEVTFEL-I 194

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           T      ++P F   V + G++  +G   SK+ ++Q+AA
Sbjct: 195 TQSHDQGYNPTFESEVLVEGISGGKGTGYSKKESQQMAA 233


>gi|318042834|ref|ZP_07974790.1| putative ribonuclease III [Synechococcus sp. CB0101]
          Length = 242

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/198 (31%), Positives = 96/198 (48%), Gaps = 7/198 (3%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           G A    + +++ALTH+S   +   ++E+LEFLGD +L L  S  L  H      GE S 
Sbjct: 26  GLASTGWAAVDEALTHTSAGLAI--NHEQLEFLGDAVLRLAASEYLEQHHPELSVGERSA 83

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGI 132
               LVS    ++V   + ++  +R+      D  +  T ++A+  E+LI ALY   G +
Sbjct: 84  LRAQLVSDRWLAEVGEAIGISDALRIGPTAGGDATALST-LRAEATEALIGALYRAFGSL 142

Query: 133 EVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RF 189
                ++   W++  RA+ S   R + K+ LQEW+ AK    P Y+   RS    DP RF
Sbjct: 143 APVHQWLTPSWERTSRAVLSDPHRGNCKSALQEWSQAKALGLPTYRTKERSKRHGDPQRF 202

Query: 190 TVVVEISGLAPAQGMDCS 207
              V + G   A+G   S
Sbjct: 203 HCHVGLEGWISAEGWGGS 220


>gi|315104262|gb|EFT76238.1| ribonuclease III [Propionibacterium acnes HL050PA2]
 gi|315106730|gb|EFT78706.1| ribonuclease III [Propionibacterium acnes HL030PA1]
          Length = 265

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/200 (32%), Positives = 99/200 (49%), Gaps = 7/200 (3%)

Query: 22  LLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL+ ALTH S +  +    + ERLEFLGD IL + ++  L+  F    EG+L+   +++V
Sbjct: 53  LLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAFPDKPEGQLAKLRSAVV 112

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
           S  +  ++AR+L +   I++     +      TSI AD  E+L+ A+ L  G+      V
Sbjct: 113 STVSLGRLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALLGAVELSAGLPNVLRLV 172

Query: 140 DKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
              +      A +SG    D KT LQE+        P Y++   SGPDH+ R+     + 
Sbjct: 173 HHLFDPLVDEADRSGAG-TDWKTVLQEYCAEHGFDAPRYEIVG-SGPDHNRRYCARANVD 230

Query: 197 GLAPAQGMDCSKRAAEQVAA 216
           G   A     +K+ AEQ AA
Sbjct: 231 GRLHAAYTGHNKKEAEQGAA 250


>gi|119489560|ref|ZP_01622320.1| Ribonuclease III [Lyngbya sp. PCC 8106]
 gi|119454472|gb|EAW35620.1| Ribonuclease III [Lyngbya sp. PCC 8106]
          Length = 395

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 103/226 (45%), Gaps = 23/226 (10%)

Query: 17  FANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLFNHFDSAK-EGEL 71
           F +  LL++ALTH +    +    +   E+LEFLGD +L  L    L+  +   + EGEL
Sbjct: 175 FQDARLLQRALTHRTYVFEHPTKTEGDNEQLEFLGDSVLNFLAGDYLYEQYSHRRDEGEL 234

Query: 72  SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131
           + R +S V     +Q A +L+L  ++++            +S+ ++  E+++ A YLD G
Sbjct: 235 TRRRSSFVDNSQFAQFAVKLNLGEWMQLGKGEELQGGRTKSSLLSNTFEAVMGAYYLDSG 294

Query: 132 IEVAGTFVDKYWK------------QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           IE     +  +++            Q+ L       D K  LQ  A       PEY V  
Sbjct: 295 IEAVRELIKPFFESVDTATVEDSIPQQTLI------DVKGRLQNLAQTNDLPIPEYYVVS 348

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
             G DH   FTV V I+     +G    K+ AE+ AA + L+  G+
Sbjct: 349 EMGKDHAKIFTVEVRINRKFYGRGTGNKKKEAEKQAAIDALQCLGL 394


>gi|161621795|ref|YP_056158.2| ribonuclease III [Propionibacterium acnes KPA171202]
          Length = 246

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/200 (32%), Positives = 99/200 (49%), Gaps = 7/200 (3%)

Query: 22  LLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL+ ALTH S +  +    + ERLEFLGD IL + ++  L+  F    EG+L+   +++V
Sbjct: 34  LLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAFPDKPEGQLAKLRSAVV 93

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
           S  +  ++AR+L +   I++     +      TSI AD  E+L+ A+ L  G+      V
Sbjct: 94  STVSLGRLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALLGAVELSAGLPNVLRLV 153

Query: 140 DKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
              +      A +SG    D KT LQE+        P Y++   SGPDH+ R+     + 
Sbjct: 154 HHLFDPLVDEADRSGAG-TDWKTVLQEYCAEHGFDAPRYEIVG-SGPDHNRRYCARANVD 211

Query: 197 GLAPAQGMDCSKRAAEQVAA 216
           G   A     +K+ AEQ AA
Sbjct: 212 GRLHAAYTGHNKKEAEQGAA 231


>gi|85057423|ref|YP_456339.1| dsRNA-specific ribonuclease [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|123518419|sp|Q2NJY3|RNC_AYWBP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|84789528|gb|ABC65260.1| dsRNA-specific ribonuclease [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 237

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 104/208 (50%), Gaps = 9/208 (4%)

Query: 19  NRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
           N  L ++ALTHSS S+     QE  ERLEFLGD I+GLL++  L++      EG ++ + 
Sbjct: 17  NLVLYKQALTHSSYSNEQTPPQEDNERLEFLGDAIVGLLMADYLYSQ-SKEDEGIMTKKR 75

Query: 76  NSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
              V  ++ +  A++++L +++ +   +  KD  +    I AD  E+L  A+YLD G   
Sbjct: 76  AQAVCEKSLTIYAQKIELQNYLLLGKGEKNKDFNA--KGIMADTFEALFGAIYLDLGYLT 133

Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
           A             K+  +  D KT+LQE   ++   T +YK+    GP H   F   V 
Sbjct: 134 AKKVFHNIVLPHLAKT-IYIIDFKTQLQEIVQSE-KKTIQYKIVQEQGPAHSKNFVAEVY 191

Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +       G   +K++AEQ AA + L +
Sbjct: 192 LEKNLLGTGEGSTKKSAEQKAAQQALSK 219


>gi|260654634|ref|ZP_05860124.1| ribonuclease III [Jonquetella anthropi E3_33 E1]
 gi|260630650|gb|EEX48844.1| ribonuclease III [Jonquetella anthropi E3_33 E1]
          Length = 239

 Score = 79.0 bits (193), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 77/217 (35%), Positives = 112/217 (51%), Gaps = 12/217 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES-YERLEFLGDRILGLLISTLLFNHFD 64
            S  +KR G  F + +LL+ ALTH S +        +RLEFLGD ++   +S  LF    
Sbjct: 15  LSAFQKRSGLVFRDPALLDLALTHRSFAAERGGGDNQRLEFLGDALIEGAVSAELFCSRT 74

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EG+L+ R   LV  ++ ++ A +L L   +R      +       +++AD  E+L A
Sbjct: 75  NDDEGKLTRRRARLVCQKSLARCADKLGLGELLRRG----RGQTEATEAMKADAFEALAA 130

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           ALYLDGG E     VD    +          DAKT L +W  A   VT  ++ T R+GPD
Sbjct: 131 ALYLDGGAEAMRGLVDLILSEPLAPL-----DAKTLLCQWG-ASCRVTVTFEETGRTGPD 184

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           H+P F V V+ +G   A G   S+ AAEQ AA +V++
Sbjct: 185 HEPHFFVRVQ-AGSETACGEGPSRLAAEQDAAGKVIR 220


>gi|187735104|ref|YP_001877216.1| Ribonuclease III [Akkermansia muciniphila ATCC BAA-835]
 gi|187425156|gb|ACD04435.1| Ribonuclease III [Akkermansia muciniphila ATCC BAA-835]
          Length = 231

 Score = 79.0 bits (193), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 92/211 (43%), Gaps = 6/211 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61
           + ++ LE ++GY F N  LL +ALTH S     +   +YERLEFLGD IL L ++  L++
Sbjct: 1   MNHTALEDKLGYRFNNPDLLVQALTHPSTDSKPETRRAYERLEFLGDAILQLAVTQYLYH 60

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           H   + EGEL+      VS     +    L L   I +     +       SI A+  ES
Sbjct: 61  HMPQSPEGELTQLRARTVSRANLGKYGFILGLDKHIALGKGEERAGGRGKNSIIANTFES 120

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVT 178
           +  A+ LD   E A     +   + AL S        + K ELQ         TP Y+  
Sbjct: 121 VFGAMSLDSDYETAKAVALRVLHE-ALDSAASHPKEINPKGELQAILQDILPETPSYETE 179

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            +   D + RF   V   G A   G   SKR
Sbjct: 180 EKGPRDAENRFESRVFWHGHAIGAGSGASKR 210


>gi|316976669|gb|EFV59916.1| putative RNase3 domain protein [Trichinella spiralis]
          Length = 1460

 Score = 79.0 bits (193), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 91/164 (55%), Gaps = 5/164 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNH 62
           + +  E+RIG  F +  LL +A T   + +++      +RLEFLGD +L L+ +  L+ H
Sbjct: 783 KLTEFEQRIGVRFNHIRLLARAFTRKCVGYNFLTLGHNQRLEFLGDSVLQLVTTEYLYKH 842

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSFMTSIQADVVES 121
           F   +EG LS+  +SLV+  T + +  +L++ +FI +  + LR +        +AD+VE+
Sbjct: 843 FPDHQEGHLSLLRSSLVNNRTQAVICDDLEIPNFILQPPAFLRNEPQELRMKDKADLVEA 902

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQE 163
            + AL++D  ++    FV   +  R  +  + +R  D K++LQ+
Sbjct: 903 FLGALFVDHSLDYCAAFVRHCFLPRLKQFIEEQRWCDPKSQLQQ 946



 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 9/112 (8%)

Query: 41  ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
           ERLE+LGD ++  L +  LF  F   +EG L+     +V     S++A ++ L  F+  +
Sbjct: 640 ERLEYLGDAVIEFLTTIHLFYIFPDLEEGALAPYRTLMVQNSHLSKLAAKMGLDEFMLFA 699

Query: 101 SDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY-----WKQ 145
                D+C    M    A+  E+++ A+YLDGG+ VA     ++     W Q
Sbjct: 700 HG--PDLCFEEDMRHAMANAFEAILGAVYLDGGVHVADRVFGRFLFPPDWNQ 749


>gi|155371010|ref|YP_001426544.1| hypothetical protein ATCV1_Z063L [Acanthocystis turfacea Chlorella
           virus 1]
 gi|155124330|gb|ABT16197.1| hypothetical protein ATCV1_Z063L [Acanthocystis turfacea Chlorella
           virus 1]
          Length = 268

 Score = 79.0 bits (193), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 99/232 (42%), Gaps = 31/232 (13%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +E  IG    + +L   A +++ +  +  E++ERLEFLGD +LG LI+  L++ F    E
Sbjct: 47  IEGLIGMPVCDFNLYVTAFSYNPLEEN-GETFERLEFLGDSVLGFLIARYLYDVFPGKNE 105

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G L+      VS +  S++A +L L  FI +S                D  E+LI A+YL
Sbjct: 106 GVLTRLRVKFVSGKLLSKLAHQLGLHEFIIMSQKGLYRCWHTNPKTLEDAFEALIGAIYL 165

Query: 129 DGGIEVAGTF---------------VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP 173
           D GI  A  F               +D   K R +K  +    AK              P
Sbjct: 166 DLGINAARQFLMSVLTKHVNIYELMIDANHKDRLVKHCRVLNLAK--------------P 211

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            +  TF  G   +  F V   I  +   +G   +++ AEQ AA   L R GI
Sbjct: 212 TFVTTFERG-GTNSMFVVEARIDNVPHGEGTGTTRKDAEQAAARTALLRLGI 262


>gi|312599268|gb|ADQ91291.1| hypothetical protein BpV2_124 [Bathycoccus sp. RCC1105 virus BpV2]
          Length = 242

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 103/217 (47%), Gaps = 12/217 (5%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHF 63
            ++E  +G    N  L +KA  H SI     S   S+E LEF+GD +LG +I+  LF+ +
Sbjct: 6   QSVELLVGTKLTNLDLYQKAFRHKSILKEDESLDGSFETLEFIGDSVLGFVITKFLFDRY 65

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
           ++ +EG L+     LV  ET + +A +L L +++++     ++       I  DV E+L+
Sbjct: 66  ENRQEGFLTKARTKLVRGETLADIATKLGLYNWVQMDEKGMRNEWFKNPKILEDVFEALV 125

Query: 124 AALYLDGGIEVAGTFVDKYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            A+Y+D G+  A  F+   +       + S     + K  L           PEY+V   
Sbjct: 126 GAIYMDLGLLHAKQFILNIYTNPEYVNMNSIMVDDNFKDHLMRHCQTNNLSLPEYRVL-- 183

Query: 181 SGPDHDPR-FTVVVEISGLAPAQGMDCSKRAAEQVAA 216
              +H+   F + V +  +   +G   +K+ AEQ AA
Sbjct: 184 ---NHENGIFYIDVYVDNVFLGRGHAKNKKQAEQHAA 217


>gi|322803055|gb|EFZ23143.1| hypothetical protein SINV_00854 [Solenopsis invicta]
          Length = 1447

 Score = 78.6 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 108/228 (47%), Gaps = 14/228 (6%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  SI ++     S +RLEFLGD +L L++S  L+  
Sbjct: 990  KLTKFEESIGIEFTHIRLLARAFTDRSIGYTNLTLGSNQRLEFLGDTVLQLIVSEYLYKF 1049

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG LS+  +SLV+ +T + V  +L +  +    +          T  +AD++E+ 
Sbjct: 1050 FPEHHEGHLSLLRSSLVNNKTQAVVCDDLGMTQYALYGN----PKAELKTKDRADLLEAF 1105

Query: 123  IAALYLDGGIEVAGTFVDK--YWKQRALKSGKFRRDAKTELQEWAHAKFGV------TPE 174
            + ALY+D G++    F D   + + +     +   D K++LQ+       +       P 
Sbjct: 1106 LGALYVDKGLKYCHIFCDVCFFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPV 1165

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YKV    GP +   +TV V   G   A     S + AE  +A E L++
Sbjct: 1166 YKVIECKGPTNTRVYTVAVYFQGKRLATASGHSIQEAEMNSAKEALEK 1213



 Score = 65.1 bits (157), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 42/113 (37%), Positives = 67/113 (59%), Gaps = 9/113 (7%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
           K  T SSI+H+     ERLEFLGD ++  L S  LF+ F   +EG L+    ++V  +  
Sbjct: 838 KTETESSIAHN-----ERLEFLGDAVVEFLTSIHLFHMFPELEEGGLATYRAAIVQNQHL 892

Query: 85  SQVARELDLASFIRVS--SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
           + +A++L+L  ++  +  SDL  D+   +    A+  E+L+ +L+LDGGIEVA
Sbjct: 893 AVLAKKLNLEEYMLYAHGSDLCHDL--ELRHAMANCFEALMGSLFLDGGIEVA 943


>gi|50840533|gb|AAT83200.1| ribonuclease III [Propionibacterium acnes KPA171202]
          Length = 366

 Score = 78.6 bits (192), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 64/200 (32%), Positives = 99/200 (49%), Gaps = 7/200 (3%)

Query: 22  LLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL+ ALTH S +  +    + ERLEFLGD IL + ++  L+  F    EG+L+   +++V
Sbjct: 154 LLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAFPDKPEGQLAKLRSAVV 213

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
           S  +  ++AR+L +   I++     +      TSI AD  E+L+ A+ L  G+      V
Sbjct: 214 STVSLGRLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALLGAVELSAGLPNVLRLV 273

Query: 140 DKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
              +      A +SG    D KT LQE+        P Y++   SGPDH+ R+     + 
Sbjct: 274 HHLFDPLVDEADRSGAG-TDWKTVLQEYCAEHGFDAPRYEIVG-SGPDHNRRYCARANVD 331

Query: 197 GLAPAQGMDCSKRAAEQVAA 216
           G   A     +K+ AEQ AA
Sbjct: 332 GRLHAAYTGHNKKEAEQGAA 351


>gi|261878907|ref|ZP_06005334.1| ribonuclease III [Prevotella bergensis DSM 17361]
 gi|270334489|gb|EFA45275.1| ribonuclease III [Prevotella bergensis DSM 17361]
          Length = 366

 Score = 78.6 bits (192), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 114/224 (50%), Gaps = 15/224 (6%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHF 63
           +L + IG+   + S  + AL H S++   +     + ERLEFLGD IL   +  +++ HF
Sbjct: 28  SLYRIIGFYPHDISHYKMALLHKSVTQHNKMGKRVNNERLEFLGDAILDAAVGDIVYRHF 87

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
              KEG L+   + LV  +T +++A+EL +   I +S+       S+M     +  E+L+
Sbjct: 88  PGKKEGFLTNTRSKLVQRDTLNKLAKELGINDLI-LSNGCSSSHNSYMG---GNAFEALV 143

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVTFR 180
            A+YLD G +    F+ K    + +   K      + K++L EW+  K  +  ++++  +
Sbjct: 144 GAIYLDRGYDACMHFLKKRILAQMINIDKMAYKEVNFKSKLIEWSQ-KNHIKMDFEL-LK 201

Query: 181 SGPDHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              D +  P F+  V + G+A  +G   SK+ ++Q A  E LKR
Sbjct: 202 EDKDKNGSPTFSYRVMLEGIAGCEGTGFSKKESQQKACKETLKR 245


>gi|307448396|pdb|3O2R|B Chain B, Structural Flexibility In Region Involved In Dimer
           Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc)
           From Campylobacter Jejuni
 gi|307448398|pdb|3O2R|D Chain D, Structural Flexibility In Region Involved In Dimer
           Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc)
           From Campylobacter Jejuni
          Length = 144

 Score = 78.6 bits (192), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 49/131 (37%), Positives = 78/131 (59%), Gaps = 5/131 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLISTLLFNHFDSA 66
           LE+ + Y F +++LL  ALTH S     ++SY  ERLEFLGD +L L++   LF+ F   
Sbjct: 5   LEQSLTYEFKDKNLLIHALTHKSFX---KKSYNNERLEFLGDAVLDLVVGEYLFHKFAKD 61

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+LS    +LV+ ++ +++A  L+L  FI +S     +      SI +D +E++I A+
Sbjct: 62  AEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALEAIIGAI 121

Query: 127 YLDGGIEVAGT 137
           +L+ G E A T
Sbjct: 122 HLEAGFEFAKT 132


>gi|330996547|ref|ZP_08320429.1| ribonuclease III [Paraprevotella xylaniphila YIT 11841]
 gi|329573103|gb|EGG54722.1| ribonuclease III [Paraprevotella xylaniphila YIT 11841]
          Length = 297

 Score = 78.6 bits (192), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 110/227 (48%), Gaps = 22/227 (9%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY---ERLEFLGDRILGLLISTLLFNH 62
           YS+  K +G+   +    E+AL H S S   Q S+   ERLEFLGD IL  ++  ++F H
Sbjct: 21  YSSFYKILGFYPHHIQYYEQALHHKSSSIKKQGSWINNERLEFLGDAILDAVVGDIVFRH 80

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L+   + +V  ET +++A E+ L   I +SS       S+M     +  E++
Sbjct: 81  FKGKHEGFLTNTRSKIVQRETLNKLAVEIGLDKLI-ISSTHSSTHNSYMC---GNAFEAM 136

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVTF 179
           + A+YLD G      F+ K    + +   K      + K++L EW   +       ++TF
Sbjct: 137 VGAIYLDRGYSYCMRFIGKRIMTQLINIDKLAYKEVNFKSKLIEWGQKR-----RVEITF 191

Query: 180 ------RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                 + G +  P FT  + I G+   +G   SK+ ++Q+AA + L
Sbjct: 192 DLIDQAQEG-NSTPVFTTQITIEGVTCCKGRGYSKKESQQLAAKDTL 237


>gi|226305918|ref|YP_002765878.1| ribonuclease III [Rhodococcus erythropolis PR4]
 gi|226185035|dbj|BAH33139.1| probable ribonuclease III [Rhodococcus erythropolis PR4]
          Length = 257

 Score = 78.6 bits (192), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 70/211 (33%), Positives = 101/211 (47%), Gaps = 14/211 (6%)

Query: 21  SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            LL  ALTH S ++      + ERLEFLGD +LG+ ++  L+       EG+L+    S+
Sbjct: 30  GLLTLALTHRSYAYENGGLPTNERLEFLGDSVLGVTVTENLYLSHPDKSEGDLAKIRASV 89

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSF---MTSIQADVVESLIAALYLDGGIEVA 135
           V+    ++VAR L            + +  +      SI AD +ES++ A++L  GI+ A
Sbjct: 90  VNMHALAEVARTLGEGGLGAHLLLGKGEEMTGGRDKPSILADGMESILGAIHLQHGIDTA 149

Query: 136 -----GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
                  F D   +   L +G    D KT LQE         P Y++T  +GPDHD  FT
Sbjct: 150 RRVVLDLFDDLLTRAPLLGAG---LDWKTSLQELTAEHGAGVPVYEIT-ATGPDHDKEFT 205

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             V IS      G+  SK+ AEQ AA+   K
Sbjct: 206 ATVLISDKPLGVGVGRSKKEAEQKAASSAWK 236


>gi|119509571|ref|ZP_01628718.1| ribonuclease III [Nodularia spumigena CCY9414]
 gi|119465760|gb|EAW46650.1| ribonuclease III [Nodularia spumigena CCY9414]
          Length = 226

 Score = 78.6 bits (192), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 100/211 (47%), Gaps = 7/211 (3%)

Query: 17  FANRSLLEKALTHSS-ISHSYQESY-ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
           F N  LL++ALTH S ++ +  E + ERLEFLGD +L  +    L+  +    E E++ R
Sbjct: 7   FQNEKLLQQALTHRSYVNENPGEKHNERLEFLGDALLTFISGEYLYTRYPEIAEDEMTRR 66

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL--DGGI 132
            ++LV  +  ++ A E+ L   +R+     +D      ++ +   ES++ A YL  D  I
Sbjct: 67  RSALVDEKQLAKFAIEVGLDFKMRLGRGAIQDGGFQSPNLLSSAFESVVGAYYLDCDRNI 126

Query: 133 EVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFG-VTPEYKVTFRSGPDHDPRF 189
           E     +   +    +A+   +   D+K   QEW  AKFG + P+Y      G DH P +
Sbjct: 127 EKIRPIIADLFNSVPQAIMEIRSNVDSKNRFQEWVQAKFGTLLPKYITERIGGQDHAPEY 186

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
              V +       G    K+ AE+ AA   L
Sbjct: 187 LAQVFVGEQVYGYGKARGKKEAEKQAAENAL 217


>gi|314923852|gb|EFS87683.1| ribonuclease III [Propionibacterium acnes HL001PA1]
 gi|314966091|gb|EFT10190.1| ribonuclease III [Propionibacterium acnes HL082PA2]
 gi|314981862|gb|EFT25955.1| ribonuclease III [Propionibacterium acnes HL110PA3]
 gi|315090788|gb|EFT62764.1| ribonuclease III [Propionibacterium acnes HL110PA4]
 gi|315094941|gb|EFT66917.1| ribonuclease III [Propionibacterium acnes HL060PA1]
 gi|327328032|gb|EGE69801.1| ribonuclease III [Propionibacterium acnes HL103PA1]
          Length = 265

 Score = 78.6 bits (192), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 64/200 (32%), Positives = 99/200 (49%), Gaps = 7/200 (3%)

Query: 22  LLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL+ ALTH S +  +    + ERLEFLGD IL + ++  L+  F    EG+L+   +++V
Sbjct: 53  LLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAFPDKPEGQLAKLRSAVV 112

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
           S  +  ++AR+L +   I++     +      TSI AD  E+L+ A+ L  G+      V
Sbjct: 113 STVSLGRLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALLGAVELSAGLPDVLRLV 172

Query: 140 DKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
              +      A +SG    D KT LQE+        P Y++   SGPDH+ R+     + 
Sbjct: 173 HHLFDPLVDEADRSGAG-TDWKTVLQEYCAEHGFDAPRYEIVG-SGPDHNRRYCARANVD 230

Query: 197 GLAPAQGMDCSKRAAEQVAA 216
           G   A     +K+ AEQ AA
Sbjct: 231 GRLYAAYTGHNKKEAEQGAA 250


>gi|282854597|ref|ZP_06263932.1| ribonuclease III [Propionibacterium acnes J139]
 gi|282582179|gb|EFB87561.1| ribonuclease III [Propionibacterium acnes J139]
          Length = 246

 Score = 78.6 bits (192), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 64/200 (32%), Positives = 99/200 (49%), Gaps = 7/200 (3%)

Query: 22  LLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL+ ALTH S +  +    + ERLEFLGD IL + ++  L+  F    EG+L+   +++V
Sbjct: 34  LLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAFPDKPEGQLAKLRSAVV 93

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
           S  +  ++AR+L +   I++     +      TSI AD  E+L+ A+ L  G+      V
Sbjct: 94  STVSLGRLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALLGAVELSAGLPDVLRLV 153

Query: 140 DKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
              +      A +SG    D KT LQE+        P Y++   SGPDH+ R+     + 
Sbjct: 154 HHLFDPLVDEADRSGAG-TDWKTVLQEYCAEHGFDAPRYEIVG-SGPDHNRRYCARANVD 211

Query: 197 GLAPAQGMDCSKRAAEQVAA 216
           G   A     +K+ AEQ AA
Sbjct: 212 GRLYAAYTGHNKKEAEQGAA 231


>gi|146298900|ref|YP_001193491.1| ribonuclease III [Flavobacterium johnsoniae UW101]
 gi|146153318|gb|ABQ04172.1| Ribonuclease III [Flavobacterium johnsoniae UW101]
          Length = 246

 Score = 78.6 bits (192), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 107/220 (48%), Gaps = 16/220 (7%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-----SYERLEFLGDRILGLLISTLLF 60
           + T++K +G+   N    +KA TH S S+   E     +YERLEFLGD +L  +I+  LF
Sbjct: 20  FDTIQKILGFQPINIEFYKKAFTHRS-SNKLDEAGHPINYERLEFLGDAMLSAVIAAHLF 78

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N   +  EG L+   + +VS E  +++ ++L+L  F+    + +  V  F  +I  ++ E
Sbjct: 79  NKAPNGDEGYLTKMRSKIVSREHLNELGKDLNLVRFV----ESKVPVQHFGENIHGNIFE 134

Query: 121 SLIAALYLDGGIEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           SLI A+YLD G      F+ K     +   A   GK     K+ + EW   +  +   Y 
Sbjct: 135 SLIGAIYLDKGYSYCERFIQKRVITPYVDIARLEGKV-ISYKSLVIEWCQKEKRIF-HYD 192

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           +   +G D    F V + I     A+    SK+ AE+ A+
Sbjct: 193 IFEDNGIDGQRLFGVKLSIDDKVVARARATSKKKAEEKAS 232


>gi|332017989|gb|EGI58626.1| Ribonuclease 3 [Acromyrmex echinatior]
          Length = 1326

 Score = 78.2 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 109/228 (47%), Gaps = 14/228 (6%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  SI ++     S +RLEFLGD +L L++S  L+ +
Sbjct: 1036 KLTKFEESIGIEFTHIRLLARAFTDRSIGYTNLTLGSNQRLEFLGDTVLQLIVSEYLYKY 1095

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG LS+  +SLV+ +T + V  +L +  +    +          T  +AD++E+ 
Sbjct: 1096 FPEHHEGHLSLLRSSLVNNKTQAVVCDDLGMTQYALYGN----PKAELKTKDRADLLEAF 1151

Query: 123  IAALYLDGGIEVAGTFVDK--YWKQRALKSGKFRRDAKTELQEWAHAKFGV------TPE 174
            + ALY+D G++    F D   + + +     +   D K++LQ+       +       P 
Sbjct: 1152 LGALYVDKGLKYCHVFCDVCFFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPV 1211

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YKV    GP +   +TV V   G   A     S + AE  +A E L++
Sbjct: 1212 YKVIECKGPTNTRVYTVAVYFQGKRLATASGHSIQEAEMNSAKEALEK 1259



 Score = 63.5 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/113 (37%), Positives = 67/113 (59%), Gaps = 9/113 (7%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
           K  T SSI+H+     ERLEFLGD ++  L S  LF+ F   +EG L+    ++V  +  
Sbjct: 884 KTETESSIAHN-----ERLEFLGDAVVEFLTSIHLFHMFPDLEEGGLATYRAAIVQNQHL 938

Query: 85  SQVARELDLASFIRVS--SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
           + +A++L+L  ++  +  SDL  D+   +    A+  E+L+ +L+LDGGIEVA
Sbjct: 939 AVLAKKLNLEEYMLYAHGSDLCHDL--ELRHAMANCFEALMGSLFLDGGIEVA 989


>gi|328723672|ref|XP_003247913.1| PREDICTED: ribonuclease 3-like [Acyrthosiphon pisum]
          Length = 1273

 Score = 78.2 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 106/229 (46%), Gaps = 18/229 (7%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNH 62
            + +  E  IG  F +  LL +A T  S+  +     S +RLEFLGD +L L+ S  L+ +
Sbjct: 964  KLTNFEDSIGIKFTHIRLLARAFTDRSVGFTNLTLGSNQRLEFLGDTVLQLIASDYLYKY 1023

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG LS+  +SLV+  T S V  +L + S+   ++          T  +AD++E+ 
Sbjct: 1024 FPEHHEGHLSLLRSSLVNNRTQSVVCDDLGMVSYALYAN----PKAELKTKDRADLLEAF 1079

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR----ALKSGKFRRDAKTELQEWAHAKFGV------T 172
            + ALY+D G+     F +  +  R     LK      D K++LQ+       V       
Sbjct: 1080 LGALYIDKGLTFCQAFCNVCFFPRLHDFILKQD--WNDPKSKLQQCCLTLRSVDGGEPDI 1137

Query: 173  PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            P YKV    GP +  ++TV V    +  +Q    S + AE  AA   L+
Sbjct: 1138 PVYKVIECMGPTNGRKYTVAVYFKSVRLSQATGHSIQRAEMNAANSALE 1186



 Score = 64.7 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/152 (32%), Positives = 73/152 (48%), Gaps = 24/152 (15%)

Query: 17  FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           F  +S +E  + H+          ERLEFLGD ++  + S  LFN F   +EG L+    
Sbjct: 809 FGKKSEMESNIMHN----------ERLEFLGDAVVEFVSSIHLFNMFPDIEEGGLATFRA 858

Query: 77  SLVSAETCSQVARELDLASFIRVS--SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
           ++V  +  + +A+ L L  F+  +  SDL  D  S +    A+  E+L+ AL+LDGGIEV
Sbjct: 859 AIVQNQHLAVLAKTLKLDDFMLYAHGSDLCHD--SELKHAMANCFEALMGALFLDGGIEV 916

Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAH 166
           A     K           F RD+   L  W +
Sbjct: 917 ADRVFGK----------TFYRDSPEYLDIWVN 938


>gi|254442236|ref|ZP_05055712.1| ribonuclease III [Verrucomicrobiae bacterium DG1235]
 gi|198256544|gb|EDY80852.1| ribonuclease III [Verrucomicrobiae bacterium DG1235]
          Length = 263

 Score = 78.2 bits (191), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 101/214 (47%), Gaps = 6/214 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           LE ++GY F  + LL ++LTH S    +    ++ +RLEFLGD ++ L+++  L+  F S
Sbjct: 39  LENKLGYTFKTKGLLHQSLTHPSFLLNTKDQLKNNQRLEFLGDSVIQLVLTEKLYEKFPS 98

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
            +EG+L+   +     +  + +AREL L  ++ +    R    +   S   D  E+LI A
Sbjct: 99  LREGKLTSIRSGYARGDYMAGIARELKLGDYLILKPKDRNAGVAENDSALGDAFEALIGA 158

Query: 126 LYLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTP-EYKVTFRSG 182
           +YLD   E +   + + +     A  +     + K +LQE      G     Y+   ++G
Sbjct: 159 IYLDSDFETSRKIILELYNYLDTAPTAKGVIANPKGKLQELIQPVHGNNALRYETIAQTG 218

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             H+  F V V        +G   +K+ A + AA
Sbjct: 219 EAHEREFEVAVFCHDEQLGKGAGRTKKEAAEKAA 252


>gi|319640160|ref|ZP_07994887.1| ribonuclease 3 [Bacteroides sp. 3_1_40A]
 gi|317388438|gb|EFV69290.1| ribonuclease 3 [Bacteroides sp. 3_1_40A]
          Length = 308

 Score = 78.2 bits (191), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 113/219 (51%), Gaps = 13/219 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y    K +G+   + S+ E+AL H S+S   ++    + ERLEFLGD IL  +++ +++ 
Sbjct: 20  YLRFYKMLGFYPKDISIYEQALLHKSLSVKSEKGRLLNNERLEFLGDAILDAVVADIVYK 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F+  +EG L+   + +V  ET +++A E+ L   I+ ++  +    S+M     +  E+
Sbjct: 80  RFEGKREGFLTNTRSKIVQRETLNRLAIEIGLDKLIKYTAR-QSSHNSYMC---GNAFEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKV 177
           L+ A+YLD G      F++       +   K  R   + K++L EW+   +F VT E  +
Sbjct: 136 LVGAIYLDRGYRACKYFMEHRIIGPYINLEKISRKEVNFKSKLIEWSQKNRFEVTFEL-I 194

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           T      + P F   V + G++  +G   SK+ ++Q+AA
Sbjct: 195 TQSHDQGYSPTFESEVLVEGISGGKGTGYSKKESQQMAA 233


>gi|155370768|ref|YP_001426302.1| hypothetical protein FR483_N670L [Paramecium bursaria Chlorella
           virus FR483]
 gi|155122358|gb|ABT14226.1| hypothetical protein MT325_M672L [Paramecium bursaria chlorella
           virus MT325]
 gi|155124088|gb|ABT15955.1| hypothetical protein FR483_N670L [Paramecium bursaria Chlorella
           virus FR483]
          Length = 266

 Score = 78.2 bits (191), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 99/214 (46%), Gaps = 3/214 (1%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           +G    +  L   A +++ I     E++ERLEFLGD +LG LI+  L++ F    EG L+
Sbjct: 49  VGMPVGDFGLYVTAFSYNPILEG-GETFERLEFLGDSVLGFLIAKYLYDTFPGKNEGILT 107

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                 VS +  S++A  L L ++I +S        +    I  D  E+LI A+YLDGGI
Sbjct: 108 RIRVKFVSGKFLSKLALNLGLHNYIIMSQKGLYRGWNTNPKILEDAFEALIGAIYLDGGI 167

Query: 133 EVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
             A  F      + A ++      + K  L +         PE+ + F  G   +  F V
Sbjct: 168 NAAKQFFMTTLARHANIQELLIDSNHKDRLAKHCRRLSLGRPEFVIQFERG-GANSLFIV 226

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            V + G   A+G   +++ AEQ A  + L   GI
Sbjct: 227 GVHVDGNKFAEGSGTTRKDAEQDACNKALLHMGI 260


>gi|315225570|ref|ZP_07867380.1| ribonuclease III [Capnocytophaga ochracea F0287]
 gi|314944514|gb|EFS96553.1| ribonuclease III [Capnocytophaga ochracea F0287]
          Length = 252

 Score = 78.2 bits (191), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 108/225 (48%), Gaps = 27/225 (12%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           Y+ +++ +G+   N S   +A TH S     + ++SYERLEFLGD ILG +I+  +F + 
Sbjct: 23  YTKIKELLGFPPKNLSYYSEAFTHPSYQFQKATRKSYERLEFLGDAILGAVIADYIFTNA 82

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG L+   + +V     +Q+ +++ L  F+R     R+       +I  ++ E+LI
Sbjct: 83  PEQDEGYLTKMRSKIVERRNLNQLGKDMRLLDFLRTKLTPRQ----LGNNITGNLFEALI 138

Query: 124 AALYLDGGIEVAGTFVDK-----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
            A+YLD G +    F+++     Y   + L+ GK     K+ L EW         ++K+ 
Sbjct: 139 GAIYLDRGYKACFKFIERELILPYINIKNLE-GKV-ISHKSLLIEWCQ-------KHKLD 189

Query: 179 FRSGPDHDPR-------FTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           F    + D         F   V + G +  +    SK+ AE++AA
Sbjct: 190 FAFEAEEDIEDCSETKFFVAKVHVQGFSVTRARSTSKKKAEEIAA 234


>gi|269101846|ref|ZP_06154543.1| ribonuclease III [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268161744|gb|EEZ40240.1| ribonuclease III [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 178

 Score = 78.2 bits (191), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 3/162 (1%)

Query: 51  LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110
           +  +I+  L++ F +  EG++S    +LV  +T +++ RE +L   + +     K     
Sbjct: 1   MSFVIADDLYHRFPNVDEGDMSRMRATLVRGKTLAELGREFELGDHLLLGPGELKSGGFR 60

Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAK 168
             SI AD VE++I A+YLD  IE     V  +++ R   ++ G  ++D KT LQE    +
Sbjct: 61  RDSILADCVEAIIGAIYLDSDIEKVRNIVLDWYQSRLETIQPGVNQKDPKTRLQECLQGR 120

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKR 209
               P Y VT   G  H+  FTV  E++GL  P  G   S+R
Sbjct: 121 RLPLPAYTVTKVHGEAHNQEFTVQCEVTGLDKPVVGKGGSRR 162


>gi|308177247|ref|YP_003916653.1| ribonuclease III [Arthrobacter arilaitensis Re117]
 gi|307744710|emb|CBT75682.1| ribonuclease III [Arthrobacter arilaitensis Re117]
          Length = 225

 Score = 78.2 bits (191), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 69/214 (32%), Positives = 106/214 (49%), Gaps = 14/214 (6%)

Query: 11  KRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           KR+G    + +    A TH S S  H    + ERLEFLGD ILG  ++  L+  F    E
Sbjct: 2   KRLGINIDSETF-RLAFTHRSYSYEHGGIPTNERLEFLGDSILGFCVAEYLYASFPDLPE 60

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+L+ R  ++VS    + +AR+L++   + +     +   +  +SI AD +E+++ A YL
Sbjct: 61  GDLAKRRAAIVSTRALAMIARDLEVGEHLFLGRGESQSNGANKSSILADTMEAILGATYL 120

Query: 129 DGGIEVAGTFVDKYW-----KQRALKSGKFRRDAKTELQ-EWAHAKFGVTPEYKVTFRSG 182
             G++ A   V ++        R L +     D KT +Q E A  K G    Y+VT  SG
Sbjct: 121 VQGMDEARALVLRFVTPLLEDPRLLGA---TTDWKTVIQEEVASQKLGEMC-YEVT-GSG 175

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           PDH   +   + I   +  +G   SK+ AEQ AA
Sbjct: 176 PDHARTYVAKLCIGAKSYGEGHGPSKKEAEQEAA 209


>gi|313886831|ref|ZP_07820536.1| ribonuclease III [Porphyromonas asaccharolytica PR426713P-I]
 gi|312923721|gb|EFR34525.1| ribonuclease III [Porphyromonas asaccharolytica PR426713P-I]
          Length = 259

 Score = 78.2 bits (191), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 104/224 (46%), Gaps = 16/224 (7%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNH 62
           +TL  RIG       L   A+ H S S       + + ERLEFLGD +L   I T L+  
Sbjct: 29  TTLFDRIGILPVRTDLYLLAMRHRSCSIVGEGGEKLNNERLEFLGDAVLEASICTYLYQL 88

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASF-IRVSSDLRKDVCSFMTSIQADVVES 121
             +  EGELS   +SLVS    ++V R L L  + I V S L   V      I  + VE+
Sbjct: 89  HPTWDEGELSKCKSSLVSRPVNNEVGRRLHLERYIIMVPSALDNSV-----DIYGNTVEA 143

Query: 122 LIAALYLDGGIEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           LI A+YLD G      FV  +    ++     +    ++ K+EL EW   K  ++ E+++
Sbjct: 144 LIGAIYLDQGYARTQEFVRDFILPTYRDMQAHTVASIQNYKSELIEWVQ-KHHLSHEFRL 202

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
                  HD  F   V I G    +G   SK+ A+Q AA + LK
Sbjct: 203 EEHEMAPHD-HFIYSVWIDGKPVGRGAGSSKKRAQQEAARDTLK 245


>gi|256820149|ref|YP_003141428.1| ribonuclease III [Capnocytophaga ochracea DSM 7271]
 gi|256581732|gb|ACU92867.1| ribonuclease III [Capnocytophaga ochracea DSM 7271]
          Length = 252

 Score = 78.2 bits (191), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 108/225 (48%), Gaps = 27/225 (12%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           Y+ +++ +G+   N S   +A TH S     + ++SYERLEFLGD ILG +I+  +F + 
Sbjct: 23  YTKIKELLGFPPKNLSYYSEAFTHPSYQFQKATRKSYERLEFLGDAILGAVIADYIFTNA 82

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG L+   + +V     +Q+ +++ L  F+R     R+       +I  ++ E+LI
Sbjct: 83  PEQDEGYLTKMRSKIVERRNLNQLGKDMRLLDFLRTKLTPRQ----LGNNITGNLFEALI 138

Query: 124 AALYLDGGIEVAGTFVDK-----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
            A+YLD G +    F+++     Y   + L+ GK     K+ L EW         ++K+ 
Sbjct: 139 GAIYLDRGYKACFKFIERELILPYINIKNLE-GKV-ISHKSLLIEWCQ-------KHKLD 189

Query: 179 FRSGPDHDPR-------FTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           F    + D         F   V + G +  +    SK+ AE++AA
Sbjct: 190 FAFEAEEDIEDCSETKFFVAKVHVQGFSVTRARSTSKKKAEEIAA 234


>gi|291456081|ref|ZP_06595471.1| ribonuclease III [Bifidobacterium breve DSM 20213]
 gi|291382490|gb|EFE90008.1| ribonuclease III [Bifidobacterium breve DSM 20213]
          Length = 247

 Score = 78.2 bits (191), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 72/207 (34%), Positives = 101/207 (48%), Gaps = 15/207 (7%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL +ALTH S SH +    +YERLEFLGD +L L+ +  LF       EG+L+      V
Sbjct: 32  LLVQALTHRSFSHEHPGVSNYERLEFLGDAVLELVTTETLFTIHPDMNEGQLAKMRAKAV 91

Query: 80  SAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE----V 134
           S +  S +A+ +L +  +I +     +   +   SI  D+VESLI A +L+ GI+    V
Sbjct: 92  SEDALSAIAKTKLKVGPYILLGHGEAEQGGAEKNSILCDIVESLIGATFLEHGIDEARKV 151

Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
               +D    + A +      D KT L   AH      P Y +   SGP++   FT  V 
Sbjct: 152 IHRLIDDTLAEVATEGPAL--DWKTSLTVKAHHLGKAEPVYHMEV-SGPEYAQIFTAKVT 208

Query: 195 ISGLAP---AQGMDCSKRAAEQVAAAE 218
           + G  P     G   SKR A Q+AAAE
Sbjct: 209 L-GDNPEIIGTGKGSSKRKA-QLAAAE 233


>gi|255016282|ref|ZP_05288408.1| ribonuclease III [Bacteroides sp. 2_1_7]
          Length = 256

 Score = 78.2 bits (191), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 112/224 (50%), Gaps = 15/224 (6%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHF 63
           +L K +G+   N  + E+AL H S S    +    + ERLEFLGD IL   ++ +++  +
Sbjct: 2   SLSKILGFYPDNLQIYEQALLHKSSSVETGDGKWLNNERLEFLGDGILDAAVADIVYKRY 61

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            + +EG L+   + +V  ET ++VA +L L   +  S+     + S    +  + +E+LI
Sbjct: 62  PNKREGFLTNTRSKIVQRETMNKVAVQLGLDQMVVYST----KINSHNNHMYGNALEALI 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFR 180
            A+YLD G +V   F+     ++ +      R   + K+ L EW+  K  ++  + +   
Sbjct: 118 GAIYLDQGYDVCYKFIRDVMIEKYIDVDMLVRKEINFKSNLIEWSQ-KNKISISFDL-IE 175

Query: 181 SGPDHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           S  DHD  P F   +++ G     G+  SK+ ++Q A+   +KR
Sbjct: 176 SFTDHDGNPVFQSAIKLLGEQIGIGIGYSKKESQQAASKMAVKR 219


>gi|237711457|ref|ZP_04541938.1| ribonuclease III [Bacteroides sp. 9_1_42FAA]
 gi|229454152|gb|EEO59873.1| ribonuclease III [Bacteroides sp. 9_1_42FAA]
          Length = 283

 Score = 78.2 bits (191), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 112/212 (52%), Gaps = 13/212 (6%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +G+   + S+ E+AL H S+S   ++    + ERLEFLGD IL  +++ +++  F+  +E
Sbjct: 2   LGFYPKDISIYEQALLHKSLSVKSEKGRLLNNERLEFLGDAILDAVVADIVYKRFEGKRE 61

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G L+   + +V  ET +++A E+ L   I+ ++  +    S+M     +  E+L+ A+YL
Sbjct: 62  GFLTNTRSKIVQRETLNRLAIEIGLDKLIKYTAR-QSSHNSYMC---GNAFEALVGAIYL 117

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKVTFRSGPD 184
           D G      F++       +   K  R   + K++L EW+   +F VT E  +T      
Sbjct: 118 DRGYRACKYFMEHRIIGSYINLEKISRKEVNFKSKLIEWSQKNRFEVTFEL-ITQSHDQG 176

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           ++P F   V + G++  +G   SK+ ++Q+AA
Sbjct: 177 YNPTFESEVLVEGISGGKGTGYSKKESQQMAA 208


>gi|119487905|ref|ZP_01621402.1| Ribonuclease III [Lyngbya sp. PCC 8106]
 gi|119455481|gb|EAW36619.1| Ribonuclease III [Lyngbya sp. PCC 8106]
          Length = 242

 Score = 78.2 bits (191), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 97/186 (52%), Gaps = 8/186 (4%)

Query: 22  LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
           LL+ ALTH SIS   + +YE+LEF+GD ++ L  S  L+  +     GE S   + LVS 
Sbjct: 31  LLDLALTHPSIS--MEANYEQLEFVGDAVVRLAASEFLWETYPKQPVGEFSAIRSVLVSD 88

Query: 82  ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG-GIEVAGTFVD 140
              +++A    +  ++ +     +D     + + AD +E+++AA YL    +++   +++
Sbjct: 89  RFLAEIAESYGMGRYLLIGGSAAQDRMGEQSRL-ADCLEAILAAFYLSTHNLQLIHPWLE 147

Query: 141 KYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISG 197
            ++++ A +      R++ K  LQEW  + + V PEY VT  SGP  D  R+T  V   G
Sbjct: 148 PHFQKGATQILRDPARQNYKAALQEWTQSHYKVLPEYTVT-ESGPMGDEERYTAQVWFQG 206

Query: 198 LAPAQG 203
               +G
Sbjct: 207 KPVGEG 212


>gi|15229816|ref|NP_189978.1| ribonuclease III family protein [Arabidopsis thaliana]
 gi|7594553|emb|CAB88120.1| putative protein [Arabidopsis thaliana]
 gi|94450858|gb|ABF19799.1| dicer-like 3 [Arabidopsis thaliana]
 gi|332644321|gb|AEE77842.1| protein dicer-like 3 [Arabidopsis thaliana]
          Length = 1531

 Score = 78.2 bits (191), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 86/155 (55%), Gaps = 26/155 (16%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            LE++I + F+ + LL++A+THSS+  SY  SYERLEFLGD +L  LI+  LFN ++    
Sbjct: 1152 LERKIQHEFSAKFLLKEAITHSSLRESY--SYERLEFLGDSVLDFLITRHLFNTYEQTGP 1209

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSFMTSIQ------------ 115
            GE++   ++ V+ E  +QVA + +L + + R ++ L   +  ++ S Q            
Sbjct: 1210 GEMTDLRSACVNNENFAQVAVKNNLHTHLQRCATVLETQINDYLMSFQKPDETGRSIPSI 1269

Query: 116  ------ADVVESLIAALYLDGGIEVAGTFVDKYWK 144
                   DVVES+  AL +D  ++     +D+ W+
Sbjct: 1270 QGPKALGDVVESIAGALLIDTRLD-----LDQVWR 1299



 Score = 40.0 bits (92), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 3/85 (3%)

Query: 14   GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
             ++ ++ S+LE A+T  +   S+  S ERLE LGD +L  + S  LF  +    EG+LS 
Sbjct: 949  NFSISSTSILE-AVTTLTCPESF--SMERLELLGDSVLKYVASCHLFLKYPDKDEGQLSR 1005

Query: 74   RFNSLVSAETCSQVARELDLASFIR 98
            +  S++S     ++     L  +IR
Sbjct: 1006 QRQSIISNSNLHRLTTSRKLQGYIR 1030


>gi|307208065|gb|EFN85596.1| Ribonuclease 3 [Harpegnathos saltator]
          Length = 1328

 Score = 78.2 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 108/228 (47%), Gaps = 14/228 (6%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  SI ++     S +RLEFLGD +L L++S  L+  
Sbjct: 1041 KLTKFEESIGIKFTHIRLLARAFTDRSIGYTNLTLGSNQRLEFLGDTVLQLIVSEYLYKF 1100

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG LS+  +SLV+ +T + V  +L +  +    +          T  +AD++E+ 
Sbjct: 1101 FPEHHEGHLSLLRSSLVNNKTQAVVCDDLGMTQYALYGN----PKAELKTKDRADLLEAF 1156

Query: 123  IAALYLDGGIEVAGTFVDK--YWKQRALKSGKFRRDAKTELQEWAHAKFGV------TPE 174
            + ALY+D G +    F D   + + +     +   D K++LQ+       +       P 
Sbjct: 1157 LGALYVDKGFKYCHVFCDVCFFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPV 1216

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YKV    GP +   +TV V   G   A+    S + AE  +A E L++
Sbjct: 1217 YKVIECKGPTNTRVYTVAVYFQGKRLAKASGHSIQEAEMNSAKEALEK 1264



 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/110 (37%), Positives = 66/110 (60%), Gaps = 9/110 (8%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
           T SSI+H+     ERLEFLGD ++  L S  LF+ F   +EG L+    ++V  +  + +
Sbjct: 892 TESSIAHN-----ERLEFLGDAVVEFLTSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVL 946

Query: 88  ARELDLASFIRVS--SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
           A++L+L  ++  +  SDL  D+   +    A+  E+L+ +L+LDGGIEVA
Sbjct: 947 AKKLNLEEYMLYAHGSDLCHDL--ELRHAMANCFEALMGSLFLDGGIEVA 994


>gi|238479965|ref|NP_001154663.1| ribonuclease III family protein [Arabidopsis thaliana]
 gi|322518661|sp|Q9LXW7|DCL3_ARATH RecName: Full=Endoribonuclease Dicer homolog 3; AltName:
            Full=Dicer-like protein 3; Short=AtDCL3
 gi|332644322|gb|AEE77843.1| protein dicer-like 3 [Arabidopsis thaliana]
          Length = 1580

 Score = 78.2 bits (191), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 86/155 (55%), Gaps = 26/155 (16%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            LE++I + F+ + LL++A+THSS+  SY  SYERLEFLGD +L  LI+  LFN ++    
Sbjct: 1201 LERKIQHEFSAKFLLKEAITHSSLRESY--SYERLEFLGDSVLDFLITRHLFNTYEQTGP 1258

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSFMTSIQ------------ 115
            GE++   ++ V+ E  +QVA + +L + + R ++ L   +  ++ S Q            
Sbjct: 1259 GEMTDLRSACVNNENFAQVAVKNNLHTHLQRCATVLETQINDYLMSFQKPDETGRSIPSI 1318

Query: 116  ------ADVVESLIAALYLDGGIEVAGTFVDKYWK 144
                   DVVES+  AL +D  ++     +D+ W+
Sbjct: 1319 QGPKALGDVVESIAGALLIDTRLD-----LDQVWR 1348



 Score = 40.0 bits (92), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 3/85 (3%)

Query: 14   GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
             ++ ++ S+LE A+T  +   S+  S ERLE LGD +L  + S  LF  +    EG+LS 
Sbjct: 998  NFSISSTSILE-AVTTLTCPESF--SMERLELLGDSVLKYVASCHLFLKYPDKDEGQLSR 1054

Query: 74   RFNSLVSAETCSQVARELDLASFIR 98
            +  S++S     ++     L  +IR
Sbjct: 1055 QRQSIISNSNLHRLTTSRKLQGYIR 1079


>gi|332644323|gb|AEE77844.1| protein dicer-like 3 [Arabidopsis thaliana]
          Length = 1570

 Score = 77.8 bits (190), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 86/155 (55%), Gaps = 26/155 (16%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            LE++I + F+ + LL++A+THSS+  SY  SYERLEFLGD +L  LI+  LFN ++    
Sbjct: 1191 LERKIQHEFSAKFLLKEAITHSSLRESY--SYERLEFLGDSVLDFLITRHLFNTYEQTGP 1248

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSFMTSIQ------------ 115
            GE++   ++ V+ E  +QVA + +L + + R ++ L   +  ++ S Q            
Sbjct: 1249 GEMTDLRSACVNNENFAQVAVKNNLHTHLQRCATVLETQINDYLMSFQKPDETGRSIPSI 1308

Query: 116  ------ADVVESLIAALYLDGGIEVAGTFVDKYWK 144
                   DVVES+  AL +D  ++     +D+ W+
Sbjct: 1309 QGPKALGDVVESIAGALLIDTRLD-----LDQVWR 1338



 Score = 40.0 bits (92), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 3/85 (3%)

Query: 14   GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
             ++ ++ S+LE A+T  +   S+  S ERLE LGD +L  + S  LF  +    EG+LS 
Sbjct: 988  NFSISSTSILE-AVTTLTCPESF--SMERLELLGDSVLKYVASCHLFLKYPDKDEGQLSR 1044

Query: 74   RFNSLVSAETCSQVARELDLASFIR 98
            +  S++S     ++     L  +IR
Sbjct: 1045 QRQSIISNSNLHRLTTSRKLQGYIR 1069


>gi|242078881|ref|XP_002444209.1| hypothetical protein SORBIDRAFT_07g015020 [Sorghum bicolor]
 gi|241940559|gb|EES13704.1| hypothetical protein SORBIDRAFT_07g015020 [Sorghum bicolor]
          Length = 291

 Score = 77.8 bits (190), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 50/148 (33%), Positives = 80/148 (54%), Gaps = 19/148 (12%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58
           MSA   + +E  +GY FA++SL+E ALTH S    Y+  ++YERLE+LGD +L  L+S  
Sbjct: 22  MSAEDVAAIEAVLGYEFADKSLVELALTHGSFYFPYRPGDTYERLEYLGDGVLTCLMSRE 81

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ-- 115
           +F ++ +   G L+    + V  E  ++VA +  L  F+R  +  L+  +C F+  ++  
Sbjct: 82  VFRNYRTLPPGPLTRLRAANVDTEKLARVAVDRGLHRFLRHKAPKLQDQICLFIEEMRKY 141

Query: 116 --------------ADVVESLIAALYLD 129
                          D+VESLI A+Y D
Sbjct: 142 PVHSNGLLDPPKVLCDIVESLIGAIYWD 169


>gi|238479963|ref|NP_001154662.1| ribonuclease III family protein [Arabidopsis thaliana]
          Length = 1577

 Score = 77.8 bits (190), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 86/155 (55%), Gaps = 26/155 (16%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            LE++I + F+ + LL++A+THSS+  SY  SYERLEFLGD +L  LI+  LFN ++    
Sbjct: 1198 LERKIQHEFSAKFLLKEAITHSSLRESY--SYERLEFLGDSVLDFLITRHLFNTYEQTGP 1255

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSFMTSIQ------------ 115
            GE++   ++ V+ E  +QVA + +L + + R ++ L   +  ++ S Q            
Sbjct: 1256 GEMTDLRSACVNNENFAQVAVKNNLHTHLQRCATVLETQINDYLMSFQKPDETGRSIPSI 1315

Query: 116  ------ADVVESLIAALYLDGGIEVAGTFVDKYWK 144
                   DVVES+  AL +D  ++     +D+ W+
Sbjct: 1316 QGPKALGDVVESIAGALLIDTRLD-----LDQVWR 1345



 Score = 40.0 bits (92), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 3/85 (3%)

Query: 14   GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
             ++ ++ S+LE A+T  +   S+  S ERLE LGD +L  + S  LF  +    EG+LS 
Sbjct: 995  NFSISSTSILE-AVTTLTCPESF--SMERLELLGDSVLKYVASCHLFLKYPDKDEGQLSR 1051

Query: 74   RFNSLVSAETCSQVARELDLASFIR 98
            +  S++S     ++     L  +IR
Sbjct: 1052 QRQSIISNSNLHRLTTSRKLQGYIR 1076


>gi|314954310|gb|EFS98716.1| ribonuclease III [Propionibacterium acnes HL027PA1]
          Length = 265

 Score = 77.8 bits (190), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 64/200 (32%), Positives = 98/200 (49%), Gaps = 7/200 (3%)

Query: 22  LLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL+ ALTH S +  +    + ERLEFLGD IL + ++  L+  F    EG+L+   +++V
Sbjct: 53  LLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAFPDKPEGQLAKLRSAVV 112

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
           S  +  Q+AR+L +   I++     +      TSI AD  E+L+ A+ L  G+      V
Sbjct: 113 STVSLGQLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALLGAVELSAGLPDVLRLV 172

Query: 140 DKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
              +      A +SG    D KT LQE+        P Y++    GPDH+ R+     + 
Sbjct: 173 HHLFDPLVDEADRSGAG-TDWKTVLQEYCAEHGFDAPRYEIVG-FGPDHNRRYCARANVD 230

Query: 197 GLAPAQGMDCSKRAAEQVAA 216
           G   A     +K+ AEQ AA
Sbjct: 231 GRLHAAYTGHNKKEAEQGAA 250


>gi|283782836|ref|YP_003373590.1| ribonuclease III [Gardnerella vaginalis 409-05]
 gi|283442034|gb|ADB14500.1| ribonuclease III [Gardnerella vaginalis 409-05]
          Length = 242

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/212 (34%), Positives = 104/212 (49%), Gaps = 21/212 (9%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL +ALTH S SH +    +YERLEFLGD +L L+ +  LF+      EG+L+      V
Sbjct: 29  LLVEALTHRSFSHEHPGTRNYERLEFLGDAVLELVSTETLFSAHPDMTEGQLAKMRAKAV 88

Query: 80  SAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138
           S    S VARE L + ++I +     +   +   SI  D+VE+LI A +++ GI+ A   
Sbjct: 89  SEWALSAVAREKLHVGAYILLGRGEMEQGGNNKDSILCDIVEALIGATFVEHGIDEARRV 148

Query: 139 VDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV-- 193
           V +         L  G    D KT L   AH      PEY++   SGP++ P F      
Sbjct: 149 VHRLIDDTLAEVLTEGPA-LDWKTSLTVKAHDMGLEDPEYRMAV-SGPEYAPVFEARAVL 206

Query: 194 ------EISGLAPAQGMDCSKRAAEQVAAAEV 219
                 E+ G+    G   SKR A Q+AAAE+
Sbjct: 207 AHKDGDEVLGV----GSGSSKRKA-QLAAAEI 233


>gi|282901362|ref|ZP_06309287.1| Ribonuclease III [Cylindrospermopsis raciborskii CS-505]
 gi|281193641|gb|EFA68613.1| Ribonuclease III [Cylindrospermopsis raciborskii CS-505]
          Length = 228

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 109/223 (48%), Gaps = 13/223 (5%)

Query: 17  FANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           F N  L+ +ALTH S ++      +  ERLEFLGD IL  +    L++ +    E EL+ 
Sbjct: 7   FKNEKLVRQALTHRSYANENPTEGDHNERLEFLGDAILNFISGEYLYSRYPQKGEDELTR 66

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG-- 131
           R ++LV  +  ++ A E+ L   +R+     +D      ++ +   E++I A YLD    
Sbjct: 67  RRSALVEEKQLAKFALEVGLNLKMRLGKGTIQDGGYQNPNLLSSTFEAVIGAYYLDNNCN 126

Query: 132 ---IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT-PEYKVTFRSGPDHDP 187
              ++VA   +  +  Q  ++S ++  D+K   QEW   K     P+YK     G  H P
Sbjct: 127 IEAVKVAVEPLFDFVSQHTIES-RYNVDSKNRFQEWVQKKLCANPPKYKTQQIGGSPHLP 185

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKREGIWT 227
            F   V + G    QG   +K+ AE+ AA +    L+REG+++
Sbjct: 186 EFASRVLVDGKEFGQGKGKNKKDAEKAAAEDAIARLQREGLFS 228


>gi|298253314|ref|ZP_06977106.1| dsRNA-specific ribonuclease [Gardnerella vaginalis 5-1]
 gi|297532709|gb|EFH71595.1| dsRNA-specific ribonuclease [Gardnerella vaginalis 5-1]
          Length = 276

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/212 (34%), Positives = 104/212 (49%), Gaps = 21/212 (9%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL +ALTH S SH +    +YERLEFLGD +L L+ +  LF+      EG+L+      V
Sbjct: 63  LLVEALTHRSFSHEHPGTRNYERLEFLGDAVLELVSTETLFSAHPDMTEGQLAKMRAKAV 122

Query: 80  SAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138
           S    S VARE L + ++I +     +   +   SI  D+VE+LI A +++ GI+ A   
Sbjct: 123 SEWALSAVAREKLHVGAYILLGRGEMEQGGNNKDSILCDIVEALIGATFVEHGIDEARRV 182

Query: 139 VDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV-- 193
           V +         L  G    D KT L   AH      PEY++   SGP++ P F      
Sbjct: 183 VHRLIDDTLAEVLTEGPA-LDWKTSLTVKAHDMGLEDPEYRMAV-SGPEYAPVFEARAVL 240

Query: 194 ------EISGLAPAQGMDCSKRAAEQVAAAEV 219
                 E+ G+    G   SKR A Q+AAAE+
Sbjct: 241 ARKDGDEVLGV----GSGSSKRKA-QLAAAEI 267


>gi|295397856|ref|ZP_06807919.1| ribonuclease III [Aerococcus viridans ATCC 11563]
 gi|294973901|gb|EFG49665.1| ribonuclease III [Aerococcus viridans ATCC 11563]
          Length = 247

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 92/193 (47%), Gaps = 7/193 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
           L  R G    + +   +A THSS  +  Q    +  ER+EFLGD +L L++S  L+ ++ 
Sbjct: 26  LADRFGLEIQDETHYIEAFTHSSYVNENQNLALQDNERIEFLGDAVLELVVSNYLYRNYP 85

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG +S     +V  E+ ++   E     F+R+ +           S+  D+ ES++ 
Sbjct: 86  EMDEGRMSSLRALIVREESLAKRCVECGFDQFVRLGNGEEASNGRKRPSLLCDLFESVLG 145

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YLD G++     +      + +K+G F R  DAKT LQE    +  +   Y++   SG
Sbjct: 146 AIYLDLGLDAIEHLMSLTIYPK-IKNGDFTRLSDAKTALQEELQKEGAIQLAYELESESG 204

Query: 183 PDHDPRFTVVVEI 195
           P H   F V V +
Sbjct: 205 PAHSKEFHVAVRL 217


>gi|297815500|ref|XP_002875633.1| hypothetical protein ARALYDRAFT_484824 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297321471|gb|EFH51892.1| hypothetical protein ARALYDRAFT_484824 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1521

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 85/155 (54%), Gaps = 26/155 (16%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            LE++I + F+ + LL++A+THSS+  SY  SYERLEFLGD +L  LI+  LFN ++    
Sbjct: 1142 LERKIQHEFSAKFLLKEAITHSSVHESY--SYERLEFLGDSVLDFLITRHLFNTYEQTGP 1199

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSFMTSIQ------------ 115
            GE++   ++ V+ E  +QVA + +L   + R ++ L   +  ++ S Q            
Sbjct: 1200 GEMTDLRSACVNNENFAQVAVKNNLHIHLQRCATVLENQINEYLMSFQKPDETGRSIPSI 1259

Query: 116  ------ADVVESLIAALYLDGGIEVAGTFVDKYWK 144
                   DVVES+  AL +D  ++     +D+ W+
Sbjct: 1260 QGPKALGDVVESIAGALLIDTRLD-----LDQVWR 1289



 Score = 41.6 bits (96), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 3/85 (3%)

Query: 14   GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
             ++ ++ S+LE A+T  +   ++  S ERLE LGD +L  + S  LF  +    EG+LS 
Sbjct: 939  NFSISSTSILE-AVTTLTCPEAF--SMERLELLGDSVLKYVASCYLFLKYPDKDEGQLSR 995

Query: 74   RFNSLVSAETCSQVARELDLASFIR 98
            +  S++S     ++A    L  +IR
Sbjct: 996  QRQSIISNSNLHRLATNRKLQGYIR 1020


>gi|297242888|ref|ZP_06926826.1| dsRNA-specific ribonuclease [Gardnerella vaginalis AMD]
 gi|296889099|gb|EFH27833.1| dsRNA-specific ribonuclease [Gardnerella vaginalis AMD]
          Length = 273

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/212 (34%), Positives = 104/212 (49%), Gaps = 21/212 (9%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL +ALTH S SH +    +YERLEFLGD +L L+ +  LF+      EG+L+      V
Sbjct: 60  LLVEALTHRSFSHEHPGTRNYERLEFLGDAVLELVSTETLFSAHPDMTEGQLAKMRAKAV 119

Query: 80  SAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138
           S    S VARE L + ++I +     +   +   SI  D+VE+LI A +++ GI+ A   
Sbjct: 120 SEWALSAVAREKLHVGAYILLGRGEMEQGGNNKDSILCDIVEALIGATFVEHGIDEARRV 179

Query: 139 VDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV-- 193
           V +         L  G    D KT L   AH      PEY++   SGP++ P F      
Sbjct: 180 VHRLIDDTLAEVLTEGPA-LDWKTSLTVKAHDMGLEDPEYRMAV-SGPEYAPVFEARAVL 237

Query: 194 ------EISGLAPAQGMDCSKRAAEQVAAAEV 219
                 E+ G+    G   SKR A Q+AAAE+
Sbjct: 238 AHKDGDEVLGV----GSGSSKRKA-QLAAAEI 264


>gi|294155354|ref|YP_003559738.1| ribonuclease III [Mycoplasma crocodyli MP145]
 gi|291600141|gb|ADE19637.1| ribonuclease III [Mycoplasma crocodyli MP145]
          Length = 223

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 106/213 (49%), Gaps = 20/213 (9%)

Query: 19  NRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           N  +  +A+THSS   S  +   YERLEFLGD ++  ++S+ LF   D   +G+++    
Sbjct: 20  NTKIYLQAITHSSFFSSSNKKNSYERLEFLGDSVIQFVVSSELFK-MDDLNQGKMTELRA 78

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
            +V AET + ++  + L   ++ +    ++     T IQ DV E+++ A+Y+D G+++A 
Sbjct: 79  KVVRAETLASISIAIGLIDILKTAPGGSQETIKNSTKIQCDVFEAIVGAIYVDQGLDIAY 138

Query: 137 TFVDKYWKQRALKSGKF-RRDAKTELQEW------AHAKFGVTPEYKVTFRSGPDHDPRF 189
            FV K+ KQ    + +   +D K+ LQE+       + K+ V       F++   H+   
Sbjct: 139 NFVFKFIKQYINGARQVENKDPKSRLQEYFQNFSKENIKYNVNQLPNKIFQARAIHE--- 195

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                  G     G   SK+ AE  AA + LK+
Sbjct: 196 -------GSVYGMGQGYSKKEAEIEAAIDALKK 221


>gi|158297080|ref|XP_555381.3| AGAP008087-PA [Anopheles gambiae str. PEST]
 gi|157015023|gb|EAL39656.3| AGAP008087-PA [Anopheles gambiae str. PEST]
          Length = 1404

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 112/225 (49%), Gaps = 18/225 (8%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66
             E  IG  F +  LL +A T  SI  +     S +RLEFLGD +L L+ S  L+ HF   
Sbjct: 953  FEDSIGVQFNHIRLLARAFTDRSIGFTNLTLGSNQRLEFLGDTVLQLICSEYLYRHFPEH 1012

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
             EG LS+  +SLV+  T + V  +L +  +  V S+ + D+    T  +AD++E+ + AL
Sbjct: 1013 HEGHLSLLRSSLVNNRTQAVVCDDLGMTQYA-VYSNPKADL---KTKDRADLLEAFLGAL 1068

Query: 127  YLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWA---HAKFGVTPE---YKVT 178
            Y+D G+E    F  V  + + +     +   D K++LQ+         G  P+   YKV 
Sbjct: 1069 YVDKGLEYCEMFCHVCLFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPVYKVI 1128

Query: 179  FRSGPDHDPRFTVVVEISG--LAPAQGMDCSKRAAEQVAAAEVLK 221
              +GP +   ++V V   G  LA A G   S + AE  AA + L+
Sbjct: 1129 ECTGPTNTRVYSVAVYFRGKRLACADGH--SIQQAEMNAAKQALE 1171



 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 62/110 (56%), Gaps = 9/110 (8%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
           T S+I+H+     ERLEFLGD ++  + S  LF+ F   +EG L+    ++V  +  + +
Sbjct: 800 TDSNITHN-----ERLEFLGDAVVEFITSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVL 854

Query: 88  ARELDLASFIRVSSDLRKDVCSFMT--SIQADVVESLIAALYLDGGIEVA 135
           A++L L  F+  +     D+C  +      A+  E+L+ AL LDGGIEVA
Sbjct: 855 AKKLHLEEFMLYAHG--SDLCHELELRHALANCFEALMGALLLDGGIEVA 902


>gi|9632031|ref|NP_048820.1| hypothetical protein PBCV1_A464R [Paramecium bursaria Chlorella
           virus 1]
 gi|2500556|sp|Q98514|A464_PBCV1 RecName: Full=Putative protein A464R
 gi|1620135|gb|AAC96831.1| similar to Bacillus ribonuclease III, corresponds to Swiss-Prot
           Accession Number P51833 [Paramecium bursaria Chlorella
           virus 1]
          Length = 275

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 104/232 (44%), Gaps = 31/232 (13%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +E  IG    + S  + A ++++I    + +YER+EF+GD +LG +I+  L+++F    E
Sbjct: 54  VEYLIGMPIIDFSYYKTAFSYNAIVEG-EATYERMEFVGDSVLGFIIARYLYDNFPGKDE 112

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G LS      VS +  S +A  + L +++ +         +    I  DV E+L+ A+Y 
Sbjct: 113 GFLSRLRTKFVSGKFLSSIALRMGLHNYVIMHQKGLYRGWNTNPRILEDVFEALMGAIYF 172

Query: 129 DGGIEVAGTF---------------VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP 173
           D GI  A  F               +D  +K R LK  +     K EL           P
Sbjct: 173 DLGINAAKQFFMTTLAKYADMQSLMLDTNYKDRLLKHTR-----KVELPR---------P 218

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           E+   F  G   +P F V V I+G   + G   S++ AEQ A+   L   G+
Sbjct: 219 EFVSVFEKG-GANPSFIVDVVINGQKISTGTGKSRKDAEQNASKIALHTMGV 269


>gi|195119378|ref|XP_002004208.1| GI19789 [Drosophila mojavensis]
 gi|193909276|gb|EDW08143.1| GI19789 [Drosophila mojavensis]
          Length = 1297

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 107/225 (47%), Gaps = 14/225 (6%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +  E  IG  F +  LL +A T  SI  +H    S +RLEFLGD +L L+ S  L+ HF 
Sbjct: 936  TRFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRHFP 995

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
               EG LS+  +SLV+  T + V  +L +  F  V ++ + D+    T  +AD++E+ + 
Sbjct: 996  EHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKFA-VYANPKADL---KTKDRADLLEAFLG 1051

Query: 125  ALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV------TPEYK 176
            ALY+D G+     F  V  + + +     +   D K++LQ+       +       P YK
Sbjct: 1052 ALYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPYYK 1111

Query: 177  VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V   SGP +   + V V       A     S + AE  AA + L+
Sbjct: 1112 VVEASGPTNTRVYKVAVYFRSKRLATASGSSIQQAEMNAAKQALE 1156



 Score = 48.9 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 10/121 (8%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
           T S+I+H+     ERLEFLGD ++  L S  LF  F   +EG L+    ++V  +  + +
Sbjct: 785 TVSNITHN-----ERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALL 839

Query: 88  ARELDLASFIRVSSDLRKDVCSFMT--SIQADVVESLIAALYLDGGIEVAG-TFVDKYWK 144
           A++L L  F+  +     D+C  +      A+  E+L+ AL LDGGI+VA   F D  ++
Sbjct: 840 AKKLQLEEFMLYAHG--SDLCHELELRHAMANCFEALMGALLLDGGIKVADEVFTDALFR 897

Query: 145 Q 145
           Q
Sbjct: 898 Q 898


>gi|88801614|ref|ZP_01117142.1| putative ribonuclease III [Polaribacter irgensii 23-P]
 gi|88782272|gb|EAR13449.1| putative ribonuclease III [Polaribacter irgensii 23-P]
          Length = 245

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 106/219 (48%), Gaps = 14/219 (6%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           L+K + ++  + +  +KA TH S+    ++    +YERLEFLGD ILG +IS  L+    
Sbjct: 22  LKKLLKFSPTSINKYKKAFTHRSVQMIDRKGIPINYERLEFLGDSILGAVISAYLYKEAP 81

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG L+   + +VS E  +++ ++L+L  F++ + D      +   +I  ++ E+LI 
Sbjct: 82  KGSEGYLTQMRSKIVSREHLNELGKDLNLIRFVKSNIDQ----ANVGDNIHGNIFEALIG 137

Query: 125 ALYLDGGIEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           A+YLD G      F+ +     +   A   GK     K  + EW   K      +     
Sbjct: 138 AIYLDKGFNFCQKFIHQNVIAPYVDIAKLEGKI-TSYKGLIIEWCQ-KQKKRYAFDAYED 195

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           SG +    F+V + I G   A+G   SK+ AE+ A+  V
Sbjct: 196 SGNETTKHFSVKISIDGQQIAKGRATSKKKAEEQASKRV 234


>gi|314978880|gb|EFT22974.1| ribonuclease III [Propionibacterium acnes HL072PA2]
 gi|315089369|gb|EFT61345.1| ribonuclease III [Propionibacterium acnes HL072PA1]
          Length = 265

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/200 (32%), Positives = 98/200 (49%), Gaps = 7/200 (3%)

Query: 22  LLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL+ ALTH S +  +    + ERLEFLGD IL + ++  L+  F    EG+L+   +++V
Sbjct: 53  LLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAFPDKPEGQLAKLRSAVV 112

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
           S  +   +AR+L +   I++     +      TSI AD  E+L+ A+ L  G+      V
Sbjct: 113 STVSLGLLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALLGAVELSAGLPDVLRLV 172

Query: 140 DKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
              +      A +SG    D KT LQE+        P Y++   SGPDH+ R+     + 
Sbjct: 173 HHLFDPLVDEADRSGAG-TDWKTVLQEYCAEHGFDAPRYEIVG-SGPDHNRRYCARANVD 230

Query: 197 GLAPAQGMDCSKRAAEQVAA 216
           G   A     +K+ AEQ AA
Sbjct: 231 GRLHAAYTGHNKKEAEQGAA 250


>gi|308235889|ref|ZP_07666626.1| ribonuclease III [Gardnerella vaginalis ATCC 14018]
          Length = 309

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 75/209 (35%), Positives = 106/209 (50%), Gaps = 17/209 (8%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL +ALTH S SH +   ++YERLEFLGD +L L+ +  LF+      EG+L+      V
Sbjct: 88  LLVEALTHRSFSHEHPGTKNYERLEFLGDAVLELVSTETLFSAHPDMTEGQLAKLRAKAV 147

Query: 80  SAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138
           S    S VAR+ L +  +I +     +   +   SI  D+VE+LI A +++ GI+ A   
Sbjct: 148 SEWALSAVARDKLHVGPYILLGHGEMEHGGAQKDSILCDIVEALIGATFVEHGIDEARAV 207

Query: 139 VDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF---TVV 192
           V +         L  G    D KT L   AH      P+Y+++  SGPD+ P F    V+
Sbjct: 208 VHRLIDDTLAEVLTEGPA-LDWKTSLTVLAHEMGLDEPQYRMSV-SGPDYAPVFHARAVL 265

Query: 193 VEISG---LAPAQGMDCSKRAAEQVAAAE 218
              SG   L  A G   SKR A Q+AAA+
Sbjct: 266 AHESGDELLGEADG--SSKRKA-QLAAAD 291


>gi|189462275|ref|ZP_03011060.1| hypothetical protein BACCOP_02961 [Bacteroides coprocola DSM 17136]
 gi|189431014|gb|EDU99998.1| hypothetical protein BACCOP_02961 [Bacteroides coprocola DSM 17136]
          Length = 314

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 112/226 (49%), Gaps = 15/226 (6%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y    K +G+   N  + ++AL H S S    +    + ERLEFLGD IL  +++ +++ 
Sbjct: 20  YLCFYKMLGFYPRNIEIYQQALLHKSSSIKAGKGRLLNNERLEFLGDAILDAIVADIVYK 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F+  +EG L+   + +V  ET ++VA E+ L   I+ ++  +    S+M     +  E+
Sbjct: 80  KFEGKREGFLTNTRSKIVQRETLNRVAVEIGLDKLIKYTTR-QSSHNSYMC---GNAFEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKV 177
           LI A+YLD G      F+++    + L   K  R   + K++L EW+   KF V  E+ +
Sbjct: 136 LIGAIYLDRGYRACKKFMEERIINQYLNLEKISRKEVNFKSKLIEWSQKNKFCV--EFNL 193

Query: 178 TFRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             +S   D +P F   + +  +    G   SK+ ++Q AA   L +
Sbjct: 194 IEQSLDSDQNPIFETQITVENIPAGTGKGYSKKESQQEAAHATLTK 239


>gi|317968415|ref|ZP_07969805.1| putative ribonuclease III [Synechococcus sp. CB0205]
          Length = 236

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 98/198 (49%), Gaps = 7/198 (3%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           L++ALTH+S   S   ++E+LEFLGD +L L  S  L  H+ +   G+ S     LVS  
Sbjct: 29  LDEALTHTSAGLSV--NHEKLEFLGDAVLRLAASEFLEQHYPNLSVGQSSALRAQLVSDR 86

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY-LDGGIEVAGTFVDK 141
              ++ R + + + +R+      D  S   +++A+  E+ I ALY L G +     ++  
Sbjct: 87  WLGELGRAVGIDAVLRIGPTAAGDT-SARETLRAEACEACIGALYRLWGDLTPVLLWLTP 145

Query: 142 YWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISGL 198
           +W+   RA ++     + K+ LQEW+  +    P+Y+    S    DP RF   V +   
Sbjct: 146 HWQATARAFEADPHLHNWKSALQEWSQGQKRGLPDYRCEEVSQVHADPRRFHCQVSLGKT 205

Query: 199 APAQGMDCSKRAAEQVAA 216
              +G   S+R AEQ AA
Sbjct: 206 TLGEGWGRSRRQAEQEAA 223


>gi|288800507|ref|ZP_06405965.1| ribonuclease III [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332720|gb|EFC71200.1| ribonuclease III [Prevotella sp. oral taxon 299 str. F0039]
          Length = 321

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 108/225 (48%), Gaps = 29/225 (12%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +G+   N  L + AL+H SI    ++    + ERLEFLGD IL  ++  +++ HF   +E
Sbjct: 7   LGFYPRNIELYQMALSHKSIHFKNKKGKPVNNERLEFLGDAILDAIVGDIVYKHFPGKRE 66

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G L+   + LV  ET +++A+E+ L+  I  SS       S+M     +  E+LI ALYL
Sbjct: 67  GFLTNTRSKLVQRETLNKIAQEIGLSRLI-YSSGRNFSHNSYMA---GNAFEALIGALYL 122

Query: 129 DGGIEVAGTFV-DKYWKQR------ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF-- 179
           D G  +   F+ +K  K+       A K   F    K+ L EWA        +  + F  
Sbjct: 123 DRGYNLCMRFMQEKILKKMVNIDTVAYKEVNF----KSRLIEWAQKN-----KMNIAFNL 173

Query: 180 ---RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              +   + +P F   V I G+        SK+ ++Q+A+ E L+
Sbjct: 174 LEQKKDEEGNPVFKYCVVIEGIKCNSASGFSKKESQQLASEETLE 218


>gi|311115015|ref|YP_003986236.1| ribonuclease III [Gardnerella vaginalis ATCC 14019]
 gi|310946509|gb|ADP39213.1| ribonuclease III [Gardnerella vaginalis ATCC 14019]
          Length = 298

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 75/209 (35%), Positives = 106/209 (50%), Gaps = 17/209 (8%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL +ALTH S SH +   ++YERLEFLGD +L L+ +  LF+      EG+L+      V
Sbjct: 77  LLVEALTHRSFSHEHPGTKNYERLEFLGDAVLELVSTETLFSAHPDMTEGQLAKLRAKAV 136

Query: 80  SAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138
           S    S VAR+ L +  +I +     +   +   SI  D+VE+LI A +++ GI+ A   
Sbjct: 137 SEWALSAVARDKLHVGPYILLGHGEMEHGGAQKDSILCDIVEALIGATFVEHGIDEARAV 196

Query: 139 VDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF---TVV 192
           V +         L  G    D KT L   AH      P+Y+++  SGPD+ P F    V+
Sbjct: 197 VHRLIDDTLAEVLTEGPA-LDWKTSLTVLAHEMGLDEPQYRMSV-SGPDYAPVFHARAVL 254

Query: 193 VEISG---LAPAQGMDCSKRAAEQVAAAE 218
              SG   L  A G   SKR A Q+AAA+
Sbjct: 255 AHESGDELLGEADG--SSKRKA-QLAAAD 280


>gi|67923480|ref|ZP_00516956.1| Ribonuclease III [Crocosphaera watsonii WH 8501]
 gi|67854668|gb|EAM49951.1| Ribonuclease III [Crocosphaera watsonii WH 8501]
          Length = 238

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 104/201 (51%), Gaps = 7/201 (3%)

Query: 22  LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
           LL+ ALTH +IS   + +Y++LEF+GD ++ L+ + +L   + +   GE +   + LVS 
Sbjct: 31  LLDLALTHPTISK--ENNYQQLEFVGDSVVRLVSAEILLETYPNELVGEFAAIRSILVSD 88

Query: 82  ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG-GIEVAGTFVD 140
            T ++ A    L  ++ +   + +D    ++ + AD  E+++ ALYL    + +   ++D
Sbjct: 89  RTLAEFADNYGLDRYLLMIDSVAQDKIGRVSWL-ADTFEAVLGALYLSTQNMTLIRPWLD 147

Query: 141 KYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR-SGPDHDPRFTVVVEISG 197
               Q+A  ++S   R++ K  LQEW   ++ + P+Y+V  +     H  RF   V +  
Sbjct: 148 PLLLQKAAEIRSDPARQNYKDALQEWTQGQYKILPDYRVAEQHQNRGHHQRFFAEVWLKD 207

Query: 198 LAPAQGMDCSKRAAEQVAAAE 218
                G   SK+ AEQ AA +
Sbjct: 208 RQLGSGYGRSKKMAEQAAAKD 228


>gi|328696734|ref|XP_003240110.1| PREDICTED: endoribonuclease dcr-1-like isoform 3 [Acyrthosiphon
            pisum]
          Length = 1630

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/156 (32%), Positives = 74/156 (47%), Gaps = 32/156 (20%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            Y  LE+RIGY+F ++ LL +ALTH +    + E Y+RLEFLGD IL  LI+T +  H   
Sbjct: 1373 YELLERRIGYSFKHKHLLAQALTHPTYQFGFSECYQRLEFLGDAILDFLITTYIIEHCYH 1432

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD----------------------- 102
               GE++   +SLV+  T + ++  + L  FI   S                        
Sbjct: 1433 KTPGEITDIRSSLVNNITFASLSARIGLHRFILAKSVQMTEAIDRFYEHQQKNNHKIGQE 1492

Query: 103  ----LRKDVCSFMTSIQ-----ADVVESLIAALYLD 129
                + +  C    S+       D+ ESLIAA+YLD
Sbjct: 1493 VLYLIEESDCYAAESVDVPKVLGDLFESLIAAIYLD 1528



 Score = 41.2 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 33/62 (53%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
            +YER+E  GD  L   +S +LF+ F S  EG L+     LV       V R L+L S++ 
Sbjct: 1151 NYERMETYGDSFLKFAVSLVLFDAFPSDNEGVLTELKMKLVGNRNLLYVGRNLNLGSYLV 1210

Query: 99   VS 100
            V+
Sbjct: 1211 VN 1212


>gi|328696732|ref|XP_001945890.2| PREDICTED: endoribonuclease dcr-1-like isoform 1 [Acyrthosiphon
            pisum]
          Length = 1691

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/156 (32%), Positives = 74/156 (47%), Gaps = 32/156 (20%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            Y  LE+RIGY+F ++ LL +ALTH +    + E Y+RLEFLGD IL  LI+T +  H   
Sbjct: 1434 YELLERRIGYSFKHKHLLAQALTHPTYQFGFSECYQRLEFLGDAILDFLITTYIIEHCYH 1493

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD----------------------- 102
               GE++   +SLV+  T + ++  + L  FI   S                        
Sbjct: 1494 KTPGEITDIRSSLVNNITFASLSARIGLHRFILAKSVQMTEAIDRFYEHQQKNNHKIGQE 1553

Query: 103  ----LRKDVCSFMTSIQ-----ADVVESLIAALYLD 129
                + +  C    S+       D+ ESLIAA+YLD
Sbjct: 1554 VLYLIEESDCYAAESVDVPKVLGDLFESLIAAIYLD 1589



 Score = 41.2 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 33/62 (53%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
            +YER+E  GD  L   +S +LF+ F S  EG L+     LV       V R L+L S++ 
Sbjct: 1212 NYERMETYGDSFLKFAVSLVLFDAFPSDNEGVLTELKMKLVGNRNLLYVGRNLNLGSYLV 1271

Query: 99   VS 100
            V+
Sbjct: 1272 VN 1273


>gi|328696730|ref|XP_003240109.1| PREDICTED: endoribonuclease dcr-1-like isoform 2 [Acyrthosiphon
            pisum]
          Length = 1648

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/156 (32%), Positives = 74/156 (47%), Gaps = 32/156 (20%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            Y  LE+RIGY+F ++ LL +ALTH +    + E Y+RLEFLGD IL  LI+T +  H   
Sbjct: 1391 YELLERRIGYSFKHKHLLAQALTHPTYQFGFSECYQRLEFLGDAILDFLITTYIIEHCYH 1450

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD----------------------- 102
               GE++   +SLV+  T + ++  + L  FI   S                        
Sbjct: 1451 KTPGEITDIRSSLVNNITFASLSARIGLHRFILAKSVQMTEAIDRFYEHQQKNNHKIGQE 1510

Query: 103  ----LRKDVCSFMTSIQ-----ADVVESLIAALYLD 129
                + +  C    S+       D+ ESLIAA+YLD
Sbjct: 1511 VLYLIEESDCYAAESVDVPKVLGDLFESLIAAIYLD 1546



 Score = 41.2 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 33/62 (53%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
            +YER+E  GD  L   +S +LF+ F S  EG L+     LV       V R L+L S++ 
Sbjct: 1169 NYERMETYGDSFLKFAVSLVLFDAFPSDNEGVLTELKMKLVGNRNLLYVGRNLNLGSYLV 1228

Query: 99   VS 100
            V+
Sbjct: 1229 VN 1230


>gi|284022406|gb|ADB65770.1| drosha [Marsupenaeus japonicus]
          Length = 400

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 109/224 (48%), Gaps = 14/224 (6%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64
           S  E+ IG  F +  LL +A T  SI  +     S +RLEFLGD +L L+ S  L+ +F 
Sbjct: 143 SKFEESIGVHFNHIRLLARAFTDRSIGFNNLTLGSNQRLEFLGDTVLQLVASEYLYKYFP 202

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG LS+  +SLV+  T + V  +L + ++  + S L+ ++    T  +AD++E+ + 
Sbjct: 203 EHHEGHLSLLRSSLVNNRTQAVVCDDLGMTAYT-MYSHLKTEL---KTKDRADLLEAFLG 258

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGV------TPEYK 176
           ALY+D G++    F    +  R  +    +   D K++LQ+       +       P YK
Sbjct: 259 ALYIDRGLDYCRAFCQVCFFPRLHQFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPIYK 318

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           V    GP +   +TV V   G   A+    S + AE  AA E L
Sbjct: 319 VIECKGPTNTRVYTVAVYFRGRRLAKASGHSIQQAEMNAAREAL 362



 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 4/95 (4%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS-- 100
            EF GD ++  L S  LF+ F S +EG L+    ++V  +  + +A +L L  F+  +  
Sbjct: 2   FEFFGDAVVEFLTSIHLFHLFPSLEEGGLATYRAAIVQNQHLAVLAEKLGLDQFMLYAHG 61

Query: 101 SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
           SDL  D    +    A+  E+L+ A++LD GIE A
Sbjct: 62  SDLCHDF--ELRHAMANCFEALMGAIFLDTGIEDA 94


>gi|325281581|ref|YP_004254123.1| Ribonuclease 3 [Odoribacter splanchnicus DSM 20712]
 gi|324313390|gb|ADY33943.1| Ribonuclease 3 [Odoribacter splanchnicus DSM 20712]
          Length = 246

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 103/222 (46%), Gaps = 27/222 (12%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAK 67
           +IG+   N+SL   AL H S S    +    +YERLEFLGD +LG +++ LL+  F    
Sbjct: 26  QIGFVPNNKSLYRLALLHKSASKMTSKGVVLNYERLEFLGDAVLGAIVAELLYKFFPKKD 85

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG L+   + +VS E+ +++A  + L   +   SD+ ++       I  DV E+ I A++
Sbjct: 86  EGFLTRVRSKVVSRESLNELAINIGLDKAVVAKSDISRN-----KHIYGDVFEAFIGAMF 140

Query: 128 LDGGIEVAGTFVDK-----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           LD G      F++K     ++  + L +     + K+ L EW           KV     
Sbjct: 141 LDQGFVNTKRFIEKFIFPNFFDIKDLVT--IDTNYKSRLIEWGQKN-------KVDIHFQ 191

Query: 183 PDHDPR----FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            D   R    F   V +S     +G   SK+ AEQ AA  V+
Sbjct: 192 TDEVARGRRKFCCTVMLSEEEKGKGEGTSKKEAEQNAAKIVI 233


>gi|149278306|ref|ZP_01884444.1| ribonuclease III [Pedobacter sp. BAL39]
 gi|149231072|gb|EDM36453.1| ribonuclease III [Pedobacter sp. BAL39]
          Length = 242

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 107/217 (49%), Gaps = 13/217 (5%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           L+  +G+   N  L + A  H S++    +  + S ERLEFLGD ILG +++ LLF ++ 
Sbjct: 21  LKNILGFVPGNTILYQMAFRHRSVAKVLKNGSRSSNERLEFLGDAILGSVVAELLFKNYP 80

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             +EG L+   + +V+    +Q+AR++     I V      +V +   S+  D  E+LI 
Sbjct: 81  YKEEGFLTEMRSKIVNRANLNQLARKMGFDQLI-VFDQKTVNVQTKHHSMLGDAFEALIG 139

Query: 125 ALYLDGGIEVAGTFVDK-----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           A+YLD G      F+ K     Y     L+  +   + K++L EW   + G    +++  
Sbjct: 140 AIYLDKGYNFTKDFLLKRIIKPYVDIHTLELTE--TNFKSKLIEWCQ-RHGKDVIFEMVQ 196

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            S  D    FT+   I G +   G D +K+ AE++AA
Sbjct: 197 NSEGDSPKLFTISAVIDGESVGIGRDYNKKNAEKLAA 233


>gi|227545817|ref|ZP_03975866.1| ribonuclease III [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|227213933|gb|EEI81772.1| ribonuclease III [Bifidobacterium longum subsp. infantis ATCC
           55813]
          Length = 242

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/206 (34%), Positives = 101/206 (49%), Gaps = 13/206 (6%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL +ALTH S SH +    +YERLEFLGD +L L+ +  LF       EG+L+      V
Sbjct: 27  LLVQALTHRSFSHEHPGVANYERLEFLGDAVLELVSTETLFTIHPDMTEGQLAKMRAKAV 86

Query: 80  SAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE----V 134
           S +  S +A+ +L +  +I +     +   +   SI  D+VESLI A +L+ GI+    V
Sbjct: 87  SEDALSAIAKTKLKVGPYILLGHGEAEQGGAEKNSILCDIVESLIGATFLEHGIDEARKV 146

Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
               +D    + A +      D KT L   AH      P Y +   SGP++   FT  V 
Sbjct: 147 IHRLIDDTLAEVATEGPAL--DWKTSLTVKAHGLGKEEPVYHMEV-SGPEYAQIFTARVS 203

Query: 195 I--SGLAPAQGMDCSKRAAEQVAAAE 218
           +  +G     G   SKR A Q+AAAE
Sbjct: 204 LGENGDTIGIGKGSSKRKA-QLAAAE 228


>gi|262202009|ref|YP_003273217.1| ribonuclease III [Gordonia bronchialis DSM 43247]
 gi|262085356|gb|ACY21324.1| ribonuclease III [Gordonia bronchialis DSM 43247]
          Length = 262

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 101/201 (50%), Gaps = 20/201 (9%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL  ALTH S ++      + ERLEFLGD +LG++I+  L+  +    EGEL+    S+V
Sbjct: 25  LLTLALTHRSYAYENGGLPTNERLEFLGDSVLGVVITERLYLSYPDRPEGELAKIRASVV 84

Query: 80  SAETCSQVARELDLASFIR---------VSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           +    + VAR L      R         ++    KD      SI AD +ESL  A++++ 
Sbjct: 85  NMHALADVARSLGPGGLGRHLYLGRGEEMTGGRDKD------SILADGLESLFGAVFIEH 138

Query: 131 GIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           G+  +   + + +     ++G      D KT LQE +  +    P+Y+++  +GPDH+  
Sbjct: 139 GLATSKRVILRLFDDVIDRAGTLGAGLDWKTSLQELSAEQGLGPPQYQIS-STGPDHNKE 197

Query: 189 FTVVVEISGLAPAQGMDCSKR 209
           FT V  ++G +   G+  +K+
Sbjct: 198 FTAVAVVAGESLGNGVGRTKK 218


>gi|150402698|ref|YP_001329992.1| ribonuclease III [Methanococcus maripaludis C7]
 gi|150033728|gb|ABR65841.1| Ribonuclease III [Methanococcus maripaludis C7]
          Length = 229

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 100/221 (45%), Gaps = 7/221 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
            +  L  ++   F +  + ++A  HSS  +  +    E  ERLE+LGD +L L+IS  LF
Sbjct: 3   NFEKLLSKLDIKFNDLDIFKRAFMHSSYVNEQKNTNLEDNERLEYLGDAVLELIISEYLF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
              +S  EGE+S      V        A++L    ++ +             +I +DV E
Sbjct: 63  KK-ESLSEGEMSKLRAKYVCESALFTYAKKLKFNDYVLLGKGELNSKGYNKPAIISDVFE 121

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + IAA+YLD G++ A  FV+ +      ++ K    D KT LQE+       T EY    
Sbjct: 122 AFIAAIYLDQGLDSAKKFVNNHIIPIIEENSKELFIDYKTRLQEFPELN-NKTIEYINLE 180

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             G  HD +F V V+       +G   SK+ AE  AA   L
Sbjct: 181 EVGEPHDKKFIVAVKSGRKMLGKGTGKSKKEAEMKAAKNAL 221


>gi|183508806|ref|ZP_02958264.1| ribonuclease III [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|182675758|gb|EDT87663.1| ribonuclease III [Ureaplasma parvum serovar 14 str. ATCC 33697]
          Length = 236

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 104/215 (48%), Gaps = 20/215 (9%)

Query: 19  NRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNH-------FDSAKEG 69
           N S+  +ALTH S +  H   ++Y+RLEFLGD  +  +IS  +FN+         S  EG
Sbjct: 19  NLSIYLEALTHKSYANEHKLTKNYQRLEFLGDACVEWVISNFIFNYKIKDNEKMHSLDEG 78

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           E++   +++V +E  S  A++L L  F+ +   L +D  + M  I  D+ E+ I A+  D
Sbjct: 79  EMTRARSNMVRSEILSYAAKDLGLTDFLMIGVGLEQDQSARMEKIYEDIFEAFIGAVAQD 138

Query: 130 GGIEVAGTFVD----KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
            GI+     ++    KY+++  +    +++D KT  QE A         YK+    G   
Sbjct: 139 QGIKKVSLILEKTLIKYFREGQI---NYQKDYKTIFQEQAQRINKKPIMYKLVRNEGDKK 195

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +        I G+    G+  +++ AE +AA   +
Sbjct: 196 EVHLVWNDLIYGI----GIASTRKEAEILAAKNAI 226


>gi|326798772|ref|YP_004316591.1| ribonuclease 3 [Sphingobacterium sp. 21]
 gi|326549536|gb|ADZ77921.1| Ribonuclease 3 [Sphingobacterium sp. 21]
          Length = 243

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 106/228 (46%), Gaps = 17/228 (7%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           L+  +G+   N  L + A  H S++       + S ERLEFLGD ILG +++ LLF  + 
Sbjct: 21  LKNLLGFIPGNLYLYQMAFRHKSVAVQVKKGTKNSNERLEFLGDAILGAVVAELLFKMYP 80

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG L+   + +VS    +Q+AR+L     I+  S +        +S+  D  E+LI 
Sbjct: 81  YKDEGFLTEMRSKIVSRVHLNQLARKLGFDELIQYDSKMV-GYPGKSSSLLGDAFEALIG 139

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSG-------KFRRDAKTELQEWAHAKFGVTPEYKV 177
           A+YLD G      F   +   R +K         +   + K+ L EW  +  G    ++V
Sbjct: 140 AVYLDKGY----MFTRNFLLSRIIKPHVDIHLLEQTETNFKSRLIEWCQST-GNEVLFEV 194

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
              +  +    FTV   ISG     G D +K+ AE++AA +  +  GI
Sbjct: 195 ANNAEGESAKLFTVEAIISGEVRGTGRDYNKKNAEKLAAEKACEALGI 242


>gi|167752469|ref|ZP_02424596.1| hypothetical protein ALIPUT_00720 [Alistipes putredinis DSM 17216]
 gi|167659538|gb|EDS03668.1| hypothetical protein ALIPUT_00720 [Alistipes putredinis DSM 17216]
          Length = 264

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 96/221 (43%), Gaps = 11/221 (4%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSS----ISHSYQESYERLEFLGDRILGLLISTLLFN 61
           Y  +++  G+   N  L + AL H S    ++   Q + ERLEFLGD ++  + S  L+ 
Sbjct: 20  YRIIDELFGFVPHNIELYKLALIHKSASLVLADGRQINNERLEFLGDAVIEAVTSDYLYI 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F   +EG L+   + +VS ++ + +AR + L  ++  +     +       I  D  E+
Sbjct: 80  EFPDRQEGFLTQLRSKIVSRQSLNTIARTIGLDRYVIANPTGSTN----QKHIYGDAFEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178
           +I A+YLD G E A   +      R L          D K+ L EW            V 
Sbjct: 136 MIGAIYLDQGYEFANRLLINNIYYRYLNLDNLTDEETDFKSRLIEWCQKTHHTIAFETVH 195

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            R+   + P F   V I G+    G   SK+ AEQ AA  V
Sbjct: 196 GRNYSSNHPIFDATVVIDGIRVGHGQGESKKEAEQCAAHSV 236


>gi|13357763|ref|NP_078037.1| ribonuclease III [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|170762098|ref|YP_001752286.1| ribonuclease III [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|171920496|ref|ZP_02931789.1| ribonuclease III [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|171920571|ref|ZP_02931835.1| ribonuclease III [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
 gi|185178791|ref|ZP_02964587.1| ribonuclease III [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|186701949|ref|ZP_02971588.1| ribonuclease III [Ureaplasma parvum serovar 6 str. ATCC 27818]
 gi|188024220|ref|ZP_02996925.1| ribonuclease III [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|188524062|ref|ZP_03004155.1| ribonuclease III [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|195867699|ref|ZP_03079700.1| ribonuclease III [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
 gi|198273484|ref|ZP_03206020.1| ribonuclease III [Ureaplasma urealyticum serovar 4 str. ATCC 27816]
 gi|209554634|ref|YP_002284601.1| ribonuclease III [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
 gi|225550368|ref|ZP_03771317.1| ribonuclease III [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
 gi|225551297|ref|ZP_03772243.1| ribonuclease III [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
 gi|22654077|sp|Q9PQT8|RNC_UREPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|11263399|pir||F82919 ribonuclease III UU205 [imported] - Ureaplasma urealyticum
 gi|6899171|gb|AAF30612.1|AE002120_4 ribonuclease III [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|168827675|gb|ACA32937.1| ribonuclease III [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|171902964|gb|EDT49253.1| ribonuclease III [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|171903275|gb|EDT49564.1| ribonuclease III [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
 gi|184209411|gb|EDU06454.1| ribonuclease III [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|186700702|gb|EDU18984.1| ribonuclease III [Ureaplasma parvum serovar 6 str. ATCC 27818]
 gi|188018874|gb|EDU56914.1| ribonuclease III [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|195659811|gb|EDX53191.1| ribonuclease III [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|195660554|gb|EDX53810.1| ribonuclease III [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
 gi|198250004|gb|EDY74784.1| ribonuclease III [Ureaplasma urealyticum serovar 4 str. ATCC 27816]
 gi|209542135|gb|ACI60364.1| ribonuclease III [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
 gi|225379112|gb|EEH01477.1| ribonuclease III [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
 gi|225379522|gb|EEH01884.1| ribonuclease III [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
          Length = 236

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 104/215 (48%), Gaps = 20/215 (9%)

Query: 19  NRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNH-------FDSAKEG 69
           N S+  +ALTH S +  H   ++Y+RLEFLGD  +  +IS  +FN+         S  EG
Sbjct: 19  NLSIYLEALTHKSYANEHKLTKNYQRLEFLGDACVEWVISNFIFNYKIKDNEKMRSLDEG 78

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           E++   +++V +E  S  A++L L  F+ +   L +D  + M  I  D+ E+ I A+  D
Sbjct: 79  EMTRARSNMVRSEILSYAAKDLGLTDFLMIGVGLEQDQSARMEKIYEDIFEAFIGAVAQD 138

Query: 130 GGIEVAGTFVD----KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
            GI+     ++    KY+++  +    +++D KT  QE A         YK+    G   
Sbjct: 139 QGIKKVSLILEKTLIKYFREGQI---NYQKDYKTIFQEQAQRINKKPIMYKLVRNEGDKK 195

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +        I G+    G+  +++ AE +AA   +
Sbjct: 196 EVHLVWNDLIYGI----GIASTRKEAEILAAKNAI 226


>gi|188518513|ref|ZP_03003985.1| ribonuclease III [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|188997913|gb|EDU67010.1| ribonuclease III [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
          Length = 239

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 104/215 (48%), Gaps = 20/215 (9%)

Query: 19  NRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNH-------FDSAKEG 69
           N S+  +ALTH S +  H   ++Y+RLEFLGD  +  +IS  +FN+         S  EG
Sbjct: 19  NLSIYLEALTHKSYANEHKLTKNYQRLEFLGDACVEWVISNFIFNYKIKDNEKMRSLDEG 78

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           E++   +++V +E  S  A++L L  F+ +   L +D  + M  I  D+ E+ I A+  D
Sbjct: 79  EMTRARSNMVRSEILSYAAKDLGLTDFLMIGVGLEQDQSARMEKIYEDIFEAFIGAVAQD 138

Query: 130 GGIEVAGTFVD----KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
            GI+     ++    KY+++  +    +++D KT  QE A         YK+    G   
Sbjct: 139 QGIKKVSLILEKTLIKYFREGQI---NYQKDYKTIFQEQAQRINKKPIMYKLVRNEGDKK 195

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +        I G+    G+  +++ AE +AA   +
Sbjct: 196 EVHLVWNDLIYGI----GIASTRKEAEILAAKNAI 226


>gi|296139284|ref|YP_003646527.1| ribonuclease III [Tsukamurella paurometabola DSM 20162]
 gi|296027418|gb|ADG78188.1| ribonuclease III [Tsukamurella paurometabola DSM 20162]
          Length = 249

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/182 (34%), Positives = 95/182 (52%), Gaps = 10/182 (5%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL  ALTH S ++      + ERLEFLGD +LG+ ++  L+       EGEL+    S+V
Sbjct: 28  LLTLALTHRSYAYEAGGLPTNERLEFLGDSVLGISVTEWLYVTHPDKPEGELAKIRASVV 87

Query: 80  SAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           +    ++VAR+L    L + + +             SI AD +E+L+ A++++ GI+ A 
Sbjct: 88  NMHALARVARKLGEGGLGAHLYLGRGEELTGGRDKDSILADGMEALLGAVHIEHGIDTAR 147

Query: 137 TFVDKYWKQRALKSGKFRR--DAKTELQEW-AHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
           + V + ++     S       D KT LQE  A    GV P Y++T  +GPDHD  FT VV
Sbjct: 148 SVVLRLFEPMLTTSSTMGAGLDWKTSLQELTAERDLGV-PAYRIT-STGPDHDKEFTAVV 205

Query: 194 EI 195
            I
Sbjct: 206 VI 207


>gi|23464896|ref|NP_695499.1| ribonuclease III [Bifidobacterium longum NCC2705]
 gi|23325487|gb|AAN24135.1| ribonuclease III [Bifidobacterium longum NCC2705]
          Length = 277

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 71/206 (34%), Positives = 101/206 (49%), Gaps = 13/206 (6%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL +ALTH S SH +    +YERLEFLGD +L L+ +  LF       EG+L+      V
Sbjct: 62  LLVQALTHRSFSHEHPGVANYERLEFLGDAVLELVSTETLFTIHPDMTEGQLAKMRAKAV 121

Query: 80  SAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE----V 134
           S +  S +A+ +L +  +I +     +   +   SI  D+VESLI A +L+ GI+    V
Sbjct: 122 SEDALSAIAKTKLKVGPYILLGHGEAEQGGAEKNSILCDIVESLIGATFLEHGIDEARKV 181

Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
               +D    + A +      D KT L   AH      P Y +   SGP++   FT  V 
Sbjct: 182 IHRLIDDTLAEVATEGPAL--DWKTSLTVKAHGLGKEEPVYHMEV-SGPEYAQIFTARVS 238

Query: 195 I--SGLAPAQGMDCSKRAAEQVAAAE 218
           +  +G     G   SKR A Q+AAAE
Sbjct: 239 LGENGDIIGIGKGSSKRKA-QLAAAE 263


>gi|167538060|ref|XP_001750696.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163770830|gb|EDQ84509.1| predicted protein [Monosiga brevicollis MX1]
          Length = 603

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 107/227 (47%), Gaps = 25/227 (11%)

Query: 15  YAFANRS-LLEK---ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
           Y+ AN + +LE+   ALTH S + + Q S ERLEFLGDR+L L  +  L++ F    EG 
Sbjct: 289 YSAANITYVLERTRPALTHGSRASAEQPSNERLEFLGDRVLNLAAAEHLYHAFPKEGEGV 348

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRV--SSDLRKDVCSFMTSIQADVVESLIAALYL 128
           L+ + +++V+A+    +A+ L L   I+V    DL     S  T +  D VE+L+ A+ L
Sbjct: 349 LTKKLSAMVNAQALHGMAKRLKLDQHIQVIEGVDL-----SERTRVLGDAVEALLGAILL 403

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           DGG   A       W   ++     R + K  LQ  A  KF        T R   + +  
Sbjct: 404 DGGWPAALAVTHHLW---SISHTPTRTNFKEALQILAQ-KFEPHELPIYTPRGCDESESV 459

Query: 189 FTVVVEISGLAPA----------QGMDCSKRAAEQVAAAEVLKREGI 225
            T  V +    P+           G   S +AAEQ AA  VLK+  I
Sbjct: 460 RTWHVRVEANLPSSWWGPIQLMGHGQGTSIKAAEQAAAISVLKQLNI 506


>gi|150399590|ref|YP_001323357.1| ribonuclease III [Methanococcus vannielii SB]
 gi|150012293|gb|ABR54745.1| Ribonuclease III [Methanococcus vannielii SB]
          Length = 227

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 101/205 (49%), Gaps = 7/205 (3%)

Query: 17  FANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           F N ++ ++A  HSS  + +     E  ERLE+LGD +L L++S  LF +     EGE+S
Sbjct: 15  FNNLNIFKQAFIHSSYVNEHDNENLEDNERLEYLGDAVLELVVSEYLFEN-KLLNEGEMS 73

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
              +  V   +    A++L+   +I +             +I +DV E+ IAA+YLD G+
Sbjct: 74  KLRSKYVCEYSLFLYAKKLNFGDYILLGKGEINSNGFNRPTILSDVFEAFIAAIYLDLGL 133

Query: 133 EVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
                F +K+      + S K   D KT+LQE   ++   T  Y +    G  HD  F V
Sbjct: 134 CSVKKFFNKFIVPIIEENSKKLFIDYKTKLQEMIQSE-NKTVRYILLEELGEPHDKEFIV 192

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAA 216
            V+I     ++G+  SK+ AE+ AA
Sbjct: 193 AVKIGRKIISKGVGKSKKDAERQAA 217


>gi|239622484|ref|ZP_04665515.1| ribonuclease III [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|239514481|gb|EEQ54348.1| ribonuclease III [Bifidobacterium longum subsp. infantis CCUG
           52486]
          Length = 272

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 71/206 (34%), Positives = 101/206 (49%), Gaps = 13/206 (6%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL +ALTH S SH +    +YERLEFLGD +L L+ +  LF       EG+L+      V
Sbjct: 57  LLVQALTHRSFSHEHPGVANYERLEFLGDAVLELVSTETLFTIHPDMTEGQLAKMRAKAV 116

Query: 80  SAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE----V 134
           S +  S +A+ +L +  +I +     +   +   SI  D+VESLI A +L+ GI+    V
Sbjct: 117 SEDALSAIAKTKLKVGPYILLGHGEAEQGGAEKNSILCDIVESLIGATFLEHGIDEARKV 176

Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
               +D    + A +      D KT L   AH      P Y +   SGP++   FT  V 
Sbjct: 177 IHRLIDDTLAEVATEGPAL--DWKTSLTVKAHGLGKEEPVYHMEV-SGPEYAQIFTARVS 233

Query: 195 I--SGLAPAQGMDCSKRAAEQVAAAE 218
           +  +G     G   SKR A Q+AAAE
Sbjct: 234 LGENGDIIGIGKGSSKRKA-QLAAAE 258


>gi|325000484|ref|ZP_08121596.1| RNAse III [Pseudonocardia sp. P1]
          Length = 249

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/213 (31%), Positives = 95/213 (44%), Gaps = 19/213 (8%)

Query: 19  NRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           +  LL  ALTH S +  H    + ERLEFLGD +L ++I+  L+       EG+L+    
Sbjct: 25  DEELLTLALTHRSYAYEHGGLPTNERLEFLGDSVLSIVITERLYRDHPDLPEGQLAKLRA 84

Query: 77  SLVSAETCSQVARELD--------LASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           S+V+    + VA  L         L +++ +             SI AD  E+L+ A+YL
Sbjct: 85  SVVNMHALAGVAVALPTPGESSDGLGAYLYLGRGEELTGGRSKASILADATEALLGAVYL 144

Query: 129 DGGIE-----VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
             G+E     V   F D       L +G    D KT LQE   A     PEY++    GP
Sbjct: 145 QHGLEPSRELVHRLFADLLHSAPLLGAG---LDWKTSLQELTAAGGHGVPEYRID-EEGP 200

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           DH   FT    + G     G   +K+ AEQ AA
Sbjct: 201 DHLKVFTATAVVGGRDLGSGAGRTKKEAEQKAA 233


>gi|254411633|ref|ZP_05025409.1| ribonuclease III [Microcoleus chthonoplastes PCC 7420]
 gi|196181355|gb|EDX76343.1| ribonuclease III [Microcoleus chthonoplastes PCC 7420]
          Length = 278

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 99/187 (52%), Gaps = 9/187 (4%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           L+ ALTH S+S     +Y++LEF+GD ++ +  S LLF  + +A  G+ +   + LVS  
Sbjct: 74  LDLALTHPSMSRDV--NYDQLEFVGDAVVRMAASELLFETYPNASVGDFAAIRSVLVSDR 131

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG-GIEVAGTFVDK 141
             +Q+A+E  L  ++ ++     D    M+ + AD  E+++ ALYL    +E+   ++D 
Sbjct: 132 ILAQLAQEYGLERYLLLAPSAAADPRGEMSRL-ADAFEAIVGALYLSTHTLELIRPWLDP 190

Query: 142 YWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISG- 197
           ++++    +     R++ K  LQEW  A +   PEY++T  +  + D  RFT  V   G 
Sbjct: 191 HFQRLTEDILKDPARQNYKDALQEWTQAHYKSLPEYRLTETNPIEADENRFTAQVWFKGQ 250

Query: 198 -LAPAQG 203
            L   QG
Sbjct: 251 QLGEGQG 257


>gi|325299342|ref|YP_004259259.1| Ribonuclease 3 [Bacteroides salanitronis DSM 18170]
 gi|324318895|gb|ADY36786.1| Ribonuclease 3 [Bacteroides salanitronis DSM 18170]
          Length = 325

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 109/218 (50%), Gaps = 15/218 (6%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           G+   N  + ++AL H S S   ++    + ERLEFLGD IL  +++ +++  F+  +EG
Sbjct: 28  GFYPRNIDIYKQALLHKSSSIKNEKGRLLNNERLEFLGDAILDAVVADIVYKRFEKKREG 87

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
            L+   + +V  ET + +A ++ L   ++ ++       S  + +  +  E+LI ALYLD
Sbjct: 88  FLTNTRSKIVQRETLNHIAVQIGLDKLVKFTTRQ----SSHNSYMGGNAFEALIGALYLD 143

Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKVTFRSGPDH 185
            G      F+++    + L   K  R   + K++L EW+   KF +   + +  +S  D 
Sbjct: 144 RGYRACKKFMEERIISQYLDIDKLSRKEVNFKSKLIEWSQKNKFQIA--FNLVNQSLDDE 201

Query: 186 -DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            +P F   + +  +    G   SK+ ++Q AA E LK+
Sbjct: 202 LNPIFNTQILVENVPAGTGKGYSKKESQQEAAHETLKK 239


>gi|319900438|ref|YP_004160166.1| RNAse III [Bacteroides helcogenes P 36-108]
 gi|319415469|gb|ADV42580.1| RNAse III [Bacteroides helcogenes P 36-108]
          Length = 290

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 112/218 (51%), Gaps = 13/218 (5%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +G+   N  + ++AL H SIS   ++    + ERLEFLGD IL  ++  +++ HF+  +E
Sbjct: 27  LGFFPRNIQIYQQALLHKSISIRSEKGRPLNNERLEFLGDAILDAIVGDIVYKHFEGRRE 86

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G L+   + +V  ET +++A E+ L   ++ SS       S  + +  +  E+ + A+YL
Sbjct: 87  GFLTNTRSKIVQRETLNKLAVEIGLDKLVKYSS----RSSSHNSYMYGNAFEAFVGAIYL 142

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKVTFRSGPD 184
           D G +    F+++   +  +   K  R   + K++L EW+   K  V+ E  +      D
Sbjct: 143 DQGYDRCKWFMEEKIFKHYIDLDKMSRKEVNFKSKLIEWSQKNKMEVSFEL-IKQLLDKD 201

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           ++P F   + I G++   G   SK+ ++Q AA   L++
Sbjct: 202 YNPMFHTEIRIEGVSAGTGTGYSKKESQQNAAQIALRK 239


>gi|311747672|ref|ZP_07721457.1| ribonuclease III [Algoriphagus sp. PR1]
 gi|126575659|gb|EAZ79969.1| ribonuclease III [Algoriphagus sp. PR1]
          Length = 250

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 102/210 (48%), Gaps = 21/210 (10%)

Query: 19  NRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
           N +L + ALT SS+    S  ++ S ERLEFLGD ILG +++  LF  +    EG L+  
Sbjct: 39  NIALYKLALTPSSLGEETSKGFKISNERLEFLGDAILGAVVAEYLFQKYPYRDEGFLTET 98

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
            + LV+ E+ +    ++ L   + +    R  + +   S+  D++E+ + A+YLD G   
Sbjct: 99  RSKLVNRESLNATGVKIGLKKILNLEIGDRNFIGN--KSLYGDILEAFLGAVYLDKGYH- 155

Query: 135 AGTFVDKYWKQRALKSGKFRRDA--------KTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
              F  K+  +R L    F  D         K+++ EW+  +     EYK+    G    
Sbjct: 156 ---FTKKFILKRILLH--FDLDGMITTVSNYKSKIIEWSQRE-NKNIEYKILHVHGNQRF 209

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             F V +EI G   +QG   +K+ AEQ A+
Sbjct: 210 KEFIVALEIDGEEASQGKGPTKKKAEQEAS 239


>gi|46190765|ref|ZP_00121069.2| COG0571: dsRNA-specific ribonuclease [Bifidobacterium longum
           DJO10A]
 gi|189439904|ref|YP_001954985.1| ribonuclease III [Bifidobacterium longum DJO10A]
 gi|312133320|ref|YP_004000659.1| rnc [Bifidobacterium longum subsp. longum BBMN68]
 gi|317482014|ref|ZP_07941039.1| ribonuclease III [Bifidobacterium sp. 12_1_47BFAA]
 gi|322688500|ref|YP_004208234.1| ribonuclease III [Bifidobacterium longum subsp. infantis 157F]
 gi|322690510|ref|YP_004220080.1| ribonuclease III [Bifidobacterium longum subsp. longum JCM 1217]
 gi|90101613|sp|Q8G7H1|RNC_BIFLO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189428339|gb|ACD98487.1| dsRNA-specific ribonuclease [Bifidobacterium longum DJO10A]
 gi|291517392|emb|CBK71008.1| RNAse III [Bifidobacterium longum subsp. longum F8]
 gi|311772536|gb|ADQ02024.1| Rnc [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916581|gb|EFV37978.1| ribonuclease III [Bifidobacterium sp. 12_1_47BFAA]
 gi|320455366|dbj|BAJ65988.1| ribonuclease III [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320459836|dbj|BAJ70456.1| ribonuclease III [Bifidobacterium longum subsp. infantis 157F]
          Length = 242

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 71/206 (34%), Positives = 101/206 (49%), Gaps = 13/206 (6%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL +ALTH S SH +    +YERLEFLGD +L L+ +  LF       EG+L+      V
Sbjct: 27  LLVQALTHRSFSHEHPGVANYERLEFLGDAVLELVSTETLFTIHPDMTEGQLAKMRAKAV 86

Query: 80  SAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE----V 134
           S +  S +A+ +L +  +I +     +   +   SI  D+VESLI A +L+ GI+    V
Sbjct: 87  SEDALSAIAKTKLKVGPYILLGHGEAEQGGAEKNSILCDIVESLIGATFLEHGIDEARKV 146

Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
               +D    + A +      D KT L   AH      P Y +   SGP++   FT  V 
Sbjct: 147 IHRLIDDTLAEVATEGPAL--DWKTSLTVKAHGLGKEEPVYHMEV-SGPEYAQIFTARVS 203

Query: 195 I--SGLAPAQGMDCSKRAAEQVAAAE 218
           +  +G     G   SKR A Q+AAAE
Sbjct: 204 LGENGDIIGIGKGSSKRKA-QLAAAE 228


>gi|296453545|ref|YP_003660688.1| ribonuclease III [Bifidobacterium longum subsp. longum JDM301]
 gi|296182976|gb|ADG99857.1| Ribonuclease III [Bifidobacterium longum subsp. longum JDM301]
          Length = 242

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 71/206 (34%), Positives = 101/206 (49%), Gaps = 13/206 (6%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL +ALTH S SH +    +YERLEFLGD +L L+ +  LF       EG+L+      V
Sbjct: 27  LLVQALTHRSFSHEHPGVANYERLEFLGDAVLELVSTETLFTIHPDMTEGQLAKMRAKAV 86

Query: 80  SAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE----V 134
           S +  S +A+ +L +  +I +     +   +   SI  D+VESLI A +L+ GI+    V
Sbjct: 87  SEDALSAIAKTKLKVGPYILLGHGETEQGGAEKNSILCDIVESLIGATFLEHGIDEARKV 146

Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
               +D    + A +      D KT L   AH      P Y +   SGP++   FT  V 
Sbjct: 147 IHRLIDDTLAEVATEGPAL--DWKTSLTVKAHGLGKDEPVYHMEV-SGPEYAQIFTARVS 203

Query: 195 I--SGLAPAQGMDCSKRAAEQVAAAE 218
           +  +G     G   SKR A Q+AAAE
Sbjct: 204 LGENGDIIGIGKGSSKRKA-QLAAAE 228


>gi|325286163|ref|YP_004261953.1| ribonuclease III [Cellulophaga lytica DSM 7489]
 gi|324321617|gb|ADY29082.1| ribonuclease III [Cellulophaga lytica DSM 7489]
          Length = 246

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 104/220 (47%), Gaps = 30/220 (13%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +G+   N S+  KA  H S +   ++    +YERLEFLGD +LG +IS  L+N      E
Sbjct: 26  LGFKPKNISIYRKAFLHRSANKKDKDGNPLNYERLEFLGDSMLGTIISKYLYNEVPLGDE 85

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFI--RVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           G L+   + +VS E  +++ ++L+L  ++  R+S         F  +I  +V E+L+ A+
Sbjct: 86  GYLTKMRSKIVSREHLNELGKDLELIKYVESRISK------SHFGDNIHGNVFEALVGAI 139

Query: 127 YLDGGIE---------VAGTFVD-KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           YLD G +         V G +VD +  + R +         K+ + EW   K      Y 
Sbjct: 140 YLDRGYQYCEKFINERVIGPYVDIEQLEGRVI-------SYKSLVIEWCQ-KQKKQFNYN 191

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           V   +G D    F V + I     A+    SK+ AE+ A+
Sbjct: 192 VYEDTGNDTLKHFAVKLSIDNNVIAKARATSKKKAEEAAS 231


>gi|213691313|ref|YP_002321899.1| Ribonuclease III [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213522774|gb|ACJ51521.1| Ribonuclease III [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|320457380|dbj|BAJ68001.1| ribonuclease III [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 242

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 71/206 (34%), Positives = 101/206 (49%), Gaps = 13/206 (6%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL +ALTH S SH +    +YERLEFLGD +L L+ +  LF       EG+L+      V
Sbjct: 27  LLVQALTHRSFSHEHPGVANYERLEFLGDAVLELVSTETLFTIHPDMTEGQLAKMRAKAV 86

Query: 80  SAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE----V 134
           S +  S +A+ +L +  +I +     +   +   SI  D+VESLI A +L+ GI+    V
Sbjct: 87  SEDALSAIAKTKLKVGPYILLGHGEAEQGGAEKNSILCDIVESLIGATFLEHGIDEARKV 146

Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
               +D    + A +      D KT L   AH      P Y +   SGP++   FT  V 
Sbjct: 147 LHRLIDDTLAEVATEGPAL--DWKTSLTVKAHGLGKEEPVYHMEV-SGPEYAQIFTARVS 203

Query: 195 I--SGLAPAQGMDCSKRAAEQVAAAE 218
           +  +G     G   SKR A Q+AAAE
Sbjct: 204 LGENGDIIGIGKGSSKRKA-QLAAAE 228


>gi|305665924|ref|YP_003862211.1| putative ribonuclease III [Maribacter sp. HTCC2170]
 gi|88710699|gb|EAR02931.1| putative ribonuclease III [Maribacter sp. HTCC2170]
          Length = 245

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 106/220 (48%), Gaps = 22/220 (10%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           + K +G+   N  + +KA  H S +   ++    +YERLEFLGD +LG +IS  L+N   
Sbjct: 22  ITKILGFKPKNLKIFKKAFLHRSANRKDEDGNPMNYERLEFLGDAMLGTIISKHLYNEVP 81

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG L+   + +VS E  +++ ++L+L  F+    + R     F  +I  +V E+L+ 
Sbjct: 82  DGDEGYLTKMRSKIVSREHLNELGKDLNLIKFV----ESRIPKTHFGDNIHGNVFEALVG 137

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKS--------GKFRRDAKTELQEWAHAKFGVTPEYK 176
           A+YLD G      + +K+  +R +          GK     K+ + EW   K   + +Y 
Sbjct: 138 AIYLDRGY----NYCEKFIHERVILPYVDIEQLEGKV-ISYKSLVIEWCQ-KQKKSFKYN 191

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           V   +G D    F V + I     A+    SK+ AE+ A+
Sbjct: 192 VYEDTGKDVLKHFAVKLSIGDNVVAKARATSKKKAEERAS 231


>gi|313768121|ref|YP_004061552.1| hypothetical protein BpV1_122 [Bathycoccus sp. RCC1105 virus BpV1]
 gi|312599728|gb|ADQ91749.1| hypothetical protein BpV1_122 [Bathycoccus sp. RCC1105 virus BpV1]
          Length = 242

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 102/217 (47%), Gaps = 12/217 (5%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHF 63
            ++E  +G       L +KA  H SI     S   S+E LEF+GD +LG +I+  LF+ +
Sbjct: 6   QSVELLVGTKITKLDLYQKAFRHKSILKEDESLDGSFETLEFIGDSVLGFVITKFLFDRY 65

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
           ++ +EG L+     LV  ET + +A +L L +++++     ++       I  DV E+L+
Sbjct: 66  ENRQEGFLTKARTKLVRGETLADIATKLGLYNWVQMDEKGMRNEWFKNPKILEDVFEALV 125

Query: 124 AALYLDGGIEVAGTFVDKYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            A+Y+D G+  A  F+   +       + S     + K  L           PEY+V   
Sbjct: 126 GAIYMDLGLLHAKQFILNIYTNPEYVNMNSIMVDDNFKDHLMRHCQTNNLSLPEYRVL-- 183

Query: 181 SGPDHDPR-FTVVVEISGLAPAQGMDCSKRAAEQVAA 216
              +H+   F + V +  +   +G   +K+ AEQ AA
Sbjct: 184 ---NHENGIFYIDVYVDNVFLGRGHAKNKKQAEQHAA 217


>gi|124026759|ref|YP_001015874.1| putative ribonuclease III [Prochlorococcus marinus str. NATL1A]
 gi|123961827|gb|ABM76610.1| putative ribonuclease III [Prochlorococcus marinus str. NATL1A]
          Length = 247

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 108/203 (53%), Gaps = 7/203 (3%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           + ++LTHSS +     +YE LEFLGD +L L+ S  + N +   + GE S   + LVS +
Sbjct: 39  INESLTHSSANSEI--NYENLEFLGDAVLRLIASDFIKNKYPYMQVGERSELRSHLVSDQ 96

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI-EVAGTFVDK 141
              +V +++++ + + + +   +D  +  T IQA+  E+LI ALY    + E    ++  
Sbjct: 97  WLEEVGKKIEIKNVLVIGNKALRDKSASAT-IQAEATEALIGALYESLTVLEPIKDWLIP 155

Query: 142 YWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVT-FRSGPDHDPRFTVVVEISGL 198
           +W++++ +  +   +++ K+ LQE   +K    P YK T      D+  RF   V +   
Sbjct: 156 FWEEKSKEVLADPHKKNYKSALQELTQSKGLSIPIYKTTEIDKKHDNPERFFCNVYVKNR 215

Query: 199 APAQGMDCSKRAAEQVAAAEVLK 221
           + A+G   S + AE+ AA++ LK
Sbjct: 216 SIAEGSGKSMKQAEKNAASKALK 238


>gi|222151066|ref|YP_002560220.1| ribonuclease III [Macrococcus caseolyticus JCSC5402]
 gi|222120189|dbj|BAH17524.1| ribonuclease III [Macrococcus caseolyticus JCSC5402]
          Length = 242

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 90/203 (44%), Gaps = 9/203 (4%)

Query: 25  KALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
           +A +HSS  + ++    +  ERLEFLGD +L L++S  L+       EG L+    ++V 
Sbjct: 34  QAFSHSSFINDFKLDKNKDNERLEFLGDAVLELMVSQYLYQQHRDLPEGRLTKLRAAIVC 93

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140
             +    A+ L     I +     K       S+ ADV E+ + ALYLD G +V   F +
Sbjct: 94  EPSLVTFAKMLKFDQLILLGKGEEKTGGRTRPSLIADVFEAFVGALYLDQGHDVTKRFFN 153

Query: 141 KYW---KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197
            Y        L  G    D KT LQE+ H    +   Y++    GP H   FT  V +  
Sbjct: 154 SYIFPAITEDLLHGLI--DYKTCLQEYIHKTKNLQVTYRLVKEEGPAHFKAFTSEVYVED 211

Query: 198 LAPAQGMDCSKRAAEQVAAAEVL 220
                G   +K+ +EQ AA   L
Sbjct: 212 KVIGTGTGRTKKESEQQAAQTAL 234


>gi|261337990|ref|ZP_05965874.1| ribonuclease III [Bifidobacterium gallicum DSM 20093]
 gi|270277492|gb|EFA23346.1| ribonuclease III [Bifidobacterium gallicum DSM 20093]
          Length = 247

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 97/206 (47%), Gaps = 12/206 (5%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL +ALTH S SH      +YERLEFLGD +L L+ +  LF       EGEL+      V
Sbjct: 35  LLVEALTHRSFSHENPGTRNYERLEFLGDAVLELVATESLFTDHPDLSEGELAKMRAKAV 94

Query: 80  SAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE----V 134
           S E  S+VARE L +  +I + +       +   SI  D+VESLI A +++ GIE    V
Sbjct: 95  SEEELSRVAREKLHVGPYILLGNGEAAQGGADKDSILCDIVESLIGATFVEHGIEGARPV 154

Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF--TVV 192
               +D    +   +      D KT L   AH      P +++    GP++ P +   V+
Sbjct: 155 VHHLIDDVLAEMMTEGPAL--DWKTSLVIKAHELGMDEPHFRMAV-GGPEYAPEYHAQVL 211

Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAE 218
           +         G   SKR A+  AA E
Sbjct: 212 IGDDDRVWGTGDGSSKRKAQLAAAHE 237


>gi|298491860|ref|YP_003722037.1| ribonuclease III ['Nostoc azollae' 0708]
 gi|298233778|gb|ADI64914.1| ribonuclease III ['Nostoc azollae' 0708]
          Length = 237

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 94/166 (56%), Gaps = 6/166 (3%)

Query: 21  SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
            LL+ ALTH+++S S   +YE+LEF+GD ++ L+ + +L+ H+     G+ +   + LVS
Sbjct: 30  PLLDLALTHATVSES--ANYEQLEFVGDAVVRLVAAVVLWEHYPYCSVGDFAAIRSVLVS 87

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG-GIEVAGTFV 139
               SQ+ARE  L  ++ V+     D     + + AD  E+++ ALYL    +E+   ++
Sbjct: 88  DRILSQLAREYGLELYLLVAGSATADHVGQESRL-ADAFEAVLGALYLSTHNLELIRPWL 146

Query: 140 DKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           D ++++  + ++    R + K  LQEW  A+F + PEY+V   + P
Sbjct: 147 DPHFQELTKEIRLDPARLNYKAALQEWTQAQFKILPEYRVMEVNQP 192


>gi|195332283|ref|XP_002032828.1| GM20991 [Drosophila sechellia]
 gi|194124798|gb|EDW46841.1| GM20991 [Drosophila sechellia]
          Length = 1310

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 108/225 (48%), Gaps = 14/225 (6%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +  E  IG  F +  LL +A T  SI  +H    S +RLEFLGD +L L+ S  L+ HF 
Sbjct: 960  TKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRHFP 1019

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
               EG LS+  +SLV+  T + V  +L +  F  V ++ + D+    T  +AD++E+ + 
Sbjct: 1020 EHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKFA-VYANPKADL---KTKDRADLLEAFLG 1075

Query: 125  ALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWA---HAKFGVTPE---YK 176
            ALY+D G+     F  V  + + +     +   D K++LQ+         G  P+   YK
Sbjct: 1076 ALYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPYYK 1135

Query: 177  VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V   SGP +   + V V       A     S + AE  AA + L+
Sbjct: 1136 VVEASGPTNTRVYKVAVYFRSKRLATSSGSSIQQAEMNAAKQALE 1180



 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 10/121 (8%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
           T S+I+H+     ERLEFLGD ++  L S  LF  F   +EG L+    ++V  +  + +
Sbjct: 809 TVSNITHN-----ERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALL 863

Query: 88  ARELDLASFIRVSSDLRKDVCSFMT--SIQADVVESLIAALYLDGGIEVAG-TFVDKYWK 144
           A++L L  F+  +     D+C  +      A+  E+L+ AL LDGGI+VA   F D  ++
Sbjct: 864 AKKLQLEEFMLYAHG--SDLCHELELRHAMANCFEALMGALLLDGGIKVADEVFTDALFR 921

Query: 145 Q 145
           Q
Sbjct: 922 Q 922


>gi|195581370|ref|XP_002080507.1| GD10519 [Drosophila simulans]
 gi|194192516|gb|EDX06092.1| GD10519 [Drosophila simulans]
          Length = 1310

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 107/225 (47%), Gaps = 14/225 (6%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +  E  IG  F +  LL +A T  SI  +H    S +RLEFLGD +L L+ S  L+ HF 
Sbjct: 960  TKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRHFP 1019

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
               EG LS+  +SLV+  T + V  +L +  +  V ++ + D+    T  +AD++E+ + 
Sbjct: 1020 EHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYA-VYANPKADL---KTKDRADLLEAFLG 1075

Query: 125  ALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV------TPEYK 176
            ALY+D G+     F  V  + + +     +   D K++LQ+       +       P YK
Sbjct: 1076 ALYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPYYK 1135

Query: 177  VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V   SGP +   + V V       A     S + AE  AA + L+
Sbjct: 1136 VVEASGPTNTRVYKVAVYFRSKRLATSSGSSIQQAEMNAAKQALE 1180



 Score = 48.5 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 10/121 (8%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
           T S+I+H+     ERLEFLGD ++  L S  LF  F   +EG L+    ++V  +  + +
Sbjct: 809 TVSNITHN-----ERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALL 863

Query: 88  ARELDLASFIRVSSDLRKDVCSFMT--SIQADVVESLIAALYLDGGIEVAG-TFVDKYWK 144
           A++L L  F+  +     D+C  +      A+  E+L+ AL LDGGI+VA   F D  ++
Sbjct: 864 AKKLQLEEFMLYAHG--SDLCHELELRHAMANCFEALMGALLLDGGIKVADEVFTDALFR 921

Query: 145 Q 145
           Q
Sbjct: 922 Q 922


>gi|300770264|ref|ZP_07080143.1| ribonuclease III [Sphingobacterium spiritivorum ATCC 33861]
 gi|300762740|gb|EFK59557.1| ribonuclease III [Sphingobacterium spiritivorum ATCC 33861]
          Length = 229

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 105/222 (47%), Gaps = 23/222 (10%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           L+  +G+   N  L + A  H S++ + +E    S ERLEFLGD ILG +++ LLF  + 
Sbjct: 4   LKNLLGFVPENIRLYQMAFRHKSVATAIKEGAKNSNERLEFLGDAILGSVVAELLFKKYP 63

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT---SIQADVVES 121
              EG L+   + +VS    +Q++R+L L   I+  + +     SF     S+  D  E+
Sbjct: 64  YKDEGFLTEMRSKIVSRANLNQLSRKLGLNELIQYDARM----ISFPNKQGSLLGDAFEA 119

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG-------KFRRDAKTELQEWAHAKFGVTPE 174
           L+ A+YLD G     TF   +   R +K+            + K+ L EW     G   +
Sbjct: 120 LVGAVYLDKGY----TFTKSFLLNRIIKTHVDIQLLEVTETNFKSRLIEWCQ-HLGKDVQ 174

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           +  T     +    F++   + G     G D +K++AE++AA
Sbjct: 175 FLPTANPEGESSKMFSIEAIVEGEVCGIGRDFNKKSAEKLAA 216


>gi|255037664|ref|YP_003088285.1| ribonuclease III [Dyadobacter fermentans DSM 18053]
 gi|254950420|gb|ACT95120.1| ribonuclease III [Dyadobacter fermentans DSM 18053]
          Length = 248

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 105/213 (49%), Gaps = 10/213 (4%)

Query: 13  IGYAFANRSLLEKALTHSSISH-----SYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           IG   +N  + + A  H+S S       ++ES ERLE+LGD +LG++++  LF  +    
Sbjct: 31  IGDKPSNLGVYQLAFRHTSASRETAIKGFRESNERLEYLGDAVLGMVVAEFLFTKYPYKD 90

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG L+   + +V+ E+ +Q++R+L L   I    + R    S  +S+  D +E+ + A+Y
Sbjct: 91  EGFLTEIRSRIVNRESLNQISRKLGLDRLIEYDGNRRG--MSPRSSMYGDALEAFVGAIY 148

Query: 128 LDGGIEVAGTF-VDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           LD G     TF + K      L S  +   + K+ + EWA  + G    +++    G  H
Sbjct: 149 LDKGFRFTRTFIISKLITHYDLDSIIQNNVNFKSLIIEWAQRE-GKEIRFEILEERGTRH 207

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
              F   + ++    A G   +K+ AEQ A+ +
Sbjct: 208 HREFISQILVNDEPFAIGNGFTKKKAEQSASEQ 240


>gi|33864688|ref|NP_896247.1| putative ribonuclease III [Synechococcus sp. WH 8102]
 gi|33632211|emb|CAE06667.1| putative ribonuclease III [Synechococcus sp. WH 8102]
          Length = 238

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 105/210 (50%), Gaps = 11/210 (5%)

Query: 8   TLEKRIGYA-FANRSLL---EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +L KR+G     + SLL   E+A+TH+S   +  +  ERLEFLGD +L L  +  L  H 
Sbjct: 11  SLIKRLGLEDMDSPSLLLEVERAMTHTSSGRT--DHNERLEFLGDAVLRLAATLYLDRHH 68

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
                G+ S     LVS    +++   +D+ S + +      D  +  T+I+AD  E+LI
Sbjct: 69  PGLTVGDSSSLRAQLVSDRWLAELGEAIDIESCLILGVKALGDAAA-RTTIRADATEALI 127

Query: 124 AALY-LDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            ALY + G +E    ++  +W++ +  + +   R + KT LQEW+  +    PEY    R
Sbjct: 128 GALYKVSGSLEPILGWLTPHWQRTSADVLAAPHRFNGKTTLQEWSQGQGLGLPEYSTEER 187

Query: 181 SGPDHDP-RFTVVVEISGLAPAQGMDCSKR 209
           S    DP RF   V ++    A+G   S++
Sbjct: 188 SQVHGDPQRFRSTVRVASKVLAEGHGRSRK 217


>gi|282896739|ref|ZP_06304747.1| Ribonuclease III [Raphidiopsis brookii D9]
 gi|281198457|gb|EFA73345.1| Ribonuclease III [Raphidiopsis brookii D9]
          Length = 276

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 92/196 (46%), Gaps = 10/196 (5%)

Query: 17  FANRSLLEKALTHSSISH---SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           F +  LL +ALTH S ++   S  +  ERLEFLGD IL  +    L++ +    E EL+ 
Sbjct: 56  FEDEKLLRQALTHRSYANENPSEGDHNERLEFLGDAILNFISGEYLYSRYPQKGEDELTR 115

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG--G 131
           R ++LV  +  ++ A E+ L   +R+     +D      ++ +   E++I A YLD    
Sbjct: 116 RRSALVEEKQLAKFALEVGLNVKMRLGKGTIQDGGYQNPNLLSSTFEAIIGAYYLDNNCN 175

Query: 132 IEVAGTFVDK---YWKQRALKSGKFRRDAKTELQEWAHAKFGVT-PEYKVTFRSGPDHDP 187
           IE     V+    +  Q  ++S ++  D+K   QEW   K     P+YK     G  H P
Sbjct: 176 IEAVKLAVEPLFDFVSQHTIES-RYNVDSKNRFQEWVQKKLCANPPKYKTQQIGGSPHLP 234

Query: 188 RFTVVVEISGLAPAQG 203
            F   V + G    QG
Sbjct: 235 EFFSRVLVDGKEFGQG 250


>gi|300727555|ref|ZP_07060946.1| ribonuclease III [Prevotella bryantii B14]
 gi|299775258|gb|EFI71859.1| ribonuclease III [Prevotella bryantii B14]
          Length = 360

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 110/228 (48%), Gaps = 21/228 (9%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNH 62
           S+L   +G+   +  L ++AL H SI H   +    + ERLEFLGD IL  ++  +++ H
Sbjct: 21  SSLYDILGFYPHDIKLYKQALMHKSIMHRNSKGKPVNNERLEFLGDAILDAIVGDIVYQH 80

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F   +EG L+   + LV  +T +++A+E+ +   I  +        S  + +  +  E+L
Sbjct: 81  FPGKREGFLTNTRSKLVQRDTLNKLAQEMGITQLILSNG----HSSSHNSYVGGNAFEAL 136

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVTF 179
           + A+YLD G      F+      + +   K      + K++L EW+          K++F
Sbjct: 137 VGAVYLDRGYNACMNFMQNRILAKMINIDKVAYKEVNFKSKLIEWSQKN-----RVKLSF 191

Query: 180 R-SGPDHD----PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             +G D D    P F+  V I  +  A+G   SK+ ++Q+A+   L +
Sbjct: 192 EMTGQDKDKNGSPIFSYKVVIENIDGAEGKGYSKKESQQIASKGTLDK 239


>gi|220905831|ref|YP_002481142.1| Ribonuclease III [Cyanothece sp. PCC 7425]
 gi|219862442|gb|ACL42781.1| Ribonuclease III [Cyanothece sp. PCC 7425]
          Length = 238

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 88/185 (47%), Gaps = 6/185 (3%)

Query: 22  LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
           LL+ ALTH + S   Q +YE+LEF GD +  L ++  L   +     GE +   + LVS 
Sbjct: 31  LLDLALTHPTFSP--QANYEQLEFFGDAVARLTVAQFLRQTYPDRSVGEWTAIRSVLVSD 88

Query: 82  ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIEVAGTFVD 140
            T + +     L  F+ + S    D  S  TS  AD +E+L+AALYL      +   ++D
Sbjct: 89  RTLATIGDSYGLERFLLMGSSAAAD-ASGQTSRLADAMEALLAALYLSTSDFRLIHPWLD 147

Query: 141 KYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
           ++W+    A+ +    ++ K  LQ W  A     PEY+V        + RF   V + G+
Sbjct: 148 RHWQPLAEAILNDPAHQNYKAALQTWTQATSRTLPEYRVQEIQQASPEERFQAEVWVQGV 207

Query: 199 APAQG 203
              QG
Sbjct: 208 LLGQG 212


>gi|312890952|ref|ZP_07750480.1| ribonuclease III [Mucilaginibacter paludis DSM 18603]
 gi|311296568|gb|EFQ73709.1| ribonuclease III [Mucilaginibacter paludis DSM 18603]
          Length = 241

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 107/221 (48%), Gaps = 22/221 (9%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           L+  +G+   N SL   A  H S++ + ++    S ERLEFLGD ILG +++ +LF  + 
Sbjct: 21  LKNLLGFVPGNLSLYRLAFRHKSVAQNVKKGVKNSNERLEFLGDAILGCVVAEVLFKLYP 80

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG L+   + +VS    +Q+AR+L     I   S  R    +   S+  D  E+L+ 
Sbjct: 81  YEDEGFLTELRSKIVSRVNLNQLARKLGFEQLIEYDS--RMVGSTRQGSLLGDAFEALVG 138

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWA--HAKFGVTPEYKVTF 179
           A+YLD G +    F+  +  +  +   K  +   + K++L EW   H+K        V+F
Sbjct: 139 AVYLDKGYDFTKNFLVNHIIKSHIDIHKLEQTESNFKSKLIEWCQRHSK-------DVSF 191

Query: 180 ---RSGPDHDPR-FTVVVEISGLAPAQGMDCSKRAAEQVAA 216
               +     P+ FT+   I G     G + +K+ AE++AA
Sbjct: 192 DLVENKEGESPKLFTIQASIDGEVLGVGKEFNKKNAEKLAA 232


>gi|15291861|gb|AAK93199.1| LD29995p [Drosophila melanogaster]
          Length = 1071

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 107/225 (47%), Gaps = 14/225 (6%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +  E  IG  F +  LL +A T  SI  +H    S +RLEFLGD +L L+ S  L+ HF 
Sbjct: 720 TKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRHFP 779

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG LS+  +SLV+  T + V  +L +  +  V ++ + D+    T  +AD++E+ + 
Sbjct: 780 EHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYA-VYANPKADL---KTKDRADLLEAFLG 835

Query: 125 ALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV------TPEYK 176
           ALY+D G+     F  V  + + +     +   D K++LQ+       +       P YK
Sbjct: 836 ALYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPYYK 895

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           V   SGP +   + V V       A     S + AE  AA + L+
Sbjct: 896 VVEASGPTNTRVYKVAVYFRSKRLATSSGSSIQQAEMNAAKQALE 940



 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 10/121 (8%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
           T S+I+H+     ERLEFLGD ++  L S  LF  F   +EG L+    ++V  +  + +
Sbjct: 569 TVSNITHN-----ERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALL 623

Query: 88  ARELDLASFIRVSSDLRKDVCSFMT--SIQADVVESLIAALYLDGGIEVAG-TFVDKYWK 144
           A++L L  F+  +     D+C  +      A+  E+L+ AL LDGGI+VA   F D  ++
Sbjct: 624 AKKLQLEEFMLYAHG--SDLCHELELRHAMANCFEALMGALLLDGGIKVADEVFTDALFR 681

Query: 145 Q 145
           Q
Sbjct: 682 Q 682


>gi|56752450|ref|YP_173151.1| ribonuclease III [Synechococcus elongatus PCC 6301]
 gi|81300454|ref|YP_400662.1| RNAse III [Synechococcus elongatus PCC 7942]
 gi|56687409|dbj|BAD80631.1| ribonuclease III [Synechococcus elongatus PCC 6301]
 gi|81169335|gb|ABB57675.1| RNAse III [Synechococcus elongatus PCC 7942]
          Length = 247

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 85/168 (50%), Gaps = 7/168 (4%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           +++ALTH S +   ++ Y+RLEFLGD +L L I+  L  H+     G+ S   + L S  
Sbjct: 40  IDRALTHPSAA---EDHYDRLEFLGDAVLRLAIADFLDRHYPDLSVGDCSALRSELGSDR 96

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG-GIEVAGTFVDK 141
           T + +A   +L   +RV      D     + + A+  E+L+ ALYL    ++   +++D 
Sbjct: 97  TLAAIAASYNLERVLRVGKTAANDRAGQQSRL-AEAFEALLGALYLSQRNLDPIRSWLDP 155

Query: 142 YWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           + +QR  A+     R + K  LQEW   ++   PEY+   RS    DP
Sbjct: 156 HLQQRATAMLQDPTRGNYKAALQEWTLQRYQELPEYRTEQRSDACGDP 203


>gi|212550552|ref|YP_002308869.1| ribonuclease III [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
 gi|229564347|sp|B6YQI6|RNC_AZOPC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|212548790|dbj|BAG83458.1| ribonuclease III [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
          Length = 261

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 107/223 (47%), Gaps = 22/223 (9%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISH-----SYQESYERLEFLGDRILGLLISTLLF 60
           Y  L + +G+   N S+ EKAL H S S       YQ + ERLEFLGD I   +I+ +L+
Sbjct: 20  YFALYRMLGFPPKNFSIYEKALLHKSSSKRDENGCYQNN-ERLEFLGDAIFNAIIAVILY 78

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F +  EG L+   + +V  +T  ++A +L +   I +S+ ++         I  + +E
Sbjct: 79  KKFPTNDEGFLTNTRSKIVKRDTLDKIAYQLGINHLIMISAKVKNH-----KHIMGNTLE 133

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA---KTELQEWAHAKFGVTPEYKV 177
           + I A+YLD G      FV+K      +      R+    K++L EW   K  +  +++ 
Sbjct: 134 AFIGAIYLDKGYLKTKEFVEKRIINPYIDIDTLVREEVNFKSKLFEWCQ-KHKILLQFQ- 191

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQ----GMDCSKRAAEQVAA 216
           T  +  D++    VV +I  L        G+  SKR ++Q A+
Sbjct: 192 TLENFTDNNR--NVVFQIQALLNNHIAGIGIGYSKRESQQHAS 232


>gi|299142079|ref|ZP_07035213.1| ribonuclease 3 [Prevotella oris C735]
 gi|298576541|gb|EFI48413.1| ribonuclease 3 [Prevotella oris C735]
          Length = 363

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 112/226 (49%), Gaps = 15/226 (6%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           YS+L   +G+   N S  + AL H SI     +    + ERLEFLGD IL  ++  +++ 
Sbjct: 20  YSSLYAILGFYPRNISYYKLALMHKSIMRRNAKGKPVNNERLEFLGDAILDAIVGDIVYQ 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF   +EG L+   + LV  +T +++A EL ++  I +S+       S+M     +  E+
Sbjct: 80  HFPGKREGFLTNTRSKLVQRDTLNKLANELGISKLI-LSNGRSSSHNSYMG---GNAFEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178
           L+ A+YLD G +    F+      + +   K      + K++L EW+  K  V  ++++ 
Sbjct: 136 LVGAVYLDRGYDACMNFMQHRILTQMINIDKVAYKEVNFKSKLIEWSQ-KNRVKLDFEI- 193

Query: 179 FRSGPDHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              G D +  P F   V I G+    G+  SK+ ++Q+A    L++
Sbjct: 194 LEQGKDKNGSPIFNYKVVIEGIDGCDGVGYSKKESQQLACKLTLEQ 239


>gi|198459728|ref|XP_001361471.2| GA21287 [Drosophila pseudoobscura pseudoobscura]
 gi|198136788|gb|EAL26049.2| GA21287 [Drosophila pseudoobscura pseudoobscura]
          Length = 1292

 Score = 75.1 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 67/225 (29%), Positives = 107/225 (47%), Gaps = 14/225 (6%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +  E  IG  F +  LL +A T  SI  +H    S +RLEFLGD +L L+ S  L+ HF 
Sbjct: 941  TKFEDSIGLKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLISSEYLYRHFP 1000

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
               EG LS+  +SLV+  T + V  +L +  +  V ++ + D+    T  +AD++E+ + 
Sbjct: 1001 EHHEGHLSLLRSSLVNNRTQAVVCDDLGMTKYA-VYANPKADL---KTKDRADLLEAFLG 1056

Query: 125  ALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV------TPEYK 176
            +LY+D G+     F  V  + + +     +   D K++LQ+       +       P YK
Sbjct: 1057 SLYVDKGLLFCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPYYK 1116

Query: 177  VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V   SGP +   + V V       A     S + AE  AA + L+
Sbjct: 1117 VVEASGPTNTRVYKVAVYFRSKRLATSSGASIQQAEMNAAKQALE 1161



 Score = 46.2 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/110 (35%), Positives = 61/110 (55%), Gaps = 9/110 (8%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
           T S+I+H+     ERLEFLGD ++  L S  LF  F   +EG L+    ++V  +  + +
Sbjct: 790 TVSNITHN-----ERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALL 844

Query: 88  ARELDLASFIRVSSDLRKDVCSFMT--SIQADVVESLIAALYLDGGIEVA 135
           A++L L  F+  +     D+C  +      A+  E+L+ AL LDGGI+VA
Sbjct: 845 AKKLQLEEFMLYAHG--SDLCHELELRHAMANCFEALMGALLLDGGIKVA 892


>gi|134102537|ref|YP_001108198.1| ribonuclease III [Saccharopolyspora erythraea NRRL 2338]
 gi|291007096|ref|ZP_06565069.1| ribonuclease III [Saccharopolyspora erythraea NRRL 2338]
 gi|133915160|emb|CAM05273.1| ribonuclease III [Saccharopolyspora erythraea NRRL 2338]
          Length = 236

 Score = 75.1 bits (183), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 68/191 (35%), Positives = 96/191 (50%), Gaps = 12/191 (6%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL  ALTH S ++        ERLEFLGD +LGL+I+  L+N      EG+L+    S+V
Sbjct: 12  LLTLALTHRSYAYENGGLPPNERLEFLGDAVLGLVITDRLYNEHPDLPEGQLAKLRASVV 71

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSF---MTSIQADVVESLIAALYLDGGIEVAG 136
           +    + VAR L            R +  +      SI AD +E+++ A+YL  GI+VA 
Sbjct: 72  NMHALAGVARGLGEGGLGEYLLLGRGEELTGGRDKASILADGLEAVLGAVYLQDGIDVAR 131

Query: 137 TFVDKYWKQ---RALKSGKFRRDAKTELQEW-AHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
             + + ++     A + G    D KT LQE  A A  GV PEY+V    GPDH   F+  
Sbjct: 132 DVIHRLFEPLLTEAPQRGAG-LDWKTSLQELTAAAALGV-PEYRVE-EQGPDHRKEFSAY 188

Query: 193 VEISGLAPAQG 203
           V ++G    QG
Sbjct: 189 VSVAGDTLGQG 199


>gi|242021933|ref|XP_002431397.1| ribonuclease III, putative [Pediculus humanus corporis]
 gi|212516673|gb|EEB18659.1| ribonuclease III, putative [Pediculus humanus corporis]
          Length = 1410

 Score = 75.1 bits (183), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 108/228 (47%), Gaps = 14/228 (6%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64
            +  E+  G  F +  LL +A T  S+ ++     S +RLEFLGD +L L+ S  L+ +F 
Sbjct: 1152 TKFEEATGIEFKHIRLLARAFTDRSVGYTNLTLGSNQRLEFLGDSVLQLIASEYLYKYFP 1211

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
               EG LS+  +SLV+ +T S V  +L +  +   ++             +AD++E+ + 
Sbjct: 1212 EHHEGHLSLLRSSLVNNKTQSVVCDDLGMTQYAVYAN----PKVELKVKDRADLLEAFLG 1267

Query: 125  ALYLDGGIEVAGTFVDK--YWKQRALKSGKFRRDAKTELQEWA---HAKFGVTPE---YK 176
            ALY+D G+++   F D   + + +     +   D K++LQ+          V P+   YK
Sbjct: 1268 ALYVDNGLDICRVFCDVCFFPRLQIFIMNQDWNDPKSKLQQCCLTLRTMDNVEPDIPIYK 1327

Query: 177  VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            V    GP +   +TV V       A+    S + AE  AA + ++  G
Sbjct: 1328 VVECKGPTNTRVYTVAVYFRNKRLAKATGHSIQQAEMNAAQKAMEVSG 1375



 Score = 62.4 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 43/113 (38%), Positives = 65/113 (57%), Gaps = 9/113 (7%)

Query: 25   KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
            K  T S+I H+     ERLEFLGD ++  + S  LF+ F   +EG L+    +LV  +  
Sbjct: 998  KNETQSNIYHN-----ERLEFLGDAVVEFITSIHLFHIFRDLEEGGLATYRAALVQNQHL 1052

Query: 85   SQVARELDLASFIRVS--SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
            S +A++L+L  F+  +  SDL  D+   +    A+  E+L+ AL+LDGGIE A
Sbjct: 1053 SVLAKKLNLDEFMLYAHGSDLCHDL--ELKHAMANCFEALMGALFLDGGIESA 1103


>gi|225159274|ref|ZP_03725574.1| Ribonuclease III [Opitutaceae bacterium TAV2]
 gi|224802127|gb|EEG20399.1| Ribonuclease III [Opitutaceae bacterium TAV2]
          Length = 250

 Score = 75.1 bits (183), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 72/130 (55%), Gaps = 3/130 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSS---ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           + L+ RIG+ F   +LLE A+TH S    +    ++ +RLE LGD +L LL++  L+  F
Sbjct: 22  AALQMRIGHKFTTPALLETAITHPSWLQDNPGAPDNNQRLELLGDAVLQLLLTHELYTLF 81

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            + +EG LS R   L      +Q+ARE+ L + +R+S+   +       S   D  E+L 
Sbjct: 82  PTDREGPLSKRRAVLSRGGFLAQLAREVGLDTVLRLSASEEQTGGRQRDSALEDAFEALF 141

Query: 124 AALYLDGGIE 133
            ALYLD G++
Sbjct: 142 GALYLDAGLD 151


>gi|119510841|ref|ZP_01629966.1| Ribonuclease III [Nodularia spumigena CCY9414]
 gi|119464520|gb|EAW45432.1| Ribonuclease III [Nodularia spumigena CCY9414]
          Length = 239

 Score = 75.1 bits (183), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 89/160 (55%), Gaps = 6/160 (3%)

Query: 22  LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
           LL+ ALTH ++S S   +YE+LEF+GD ++ L  + +L+  +     G+ +   + LVS 
Sbjct: 31  LLDLALTHPTVSES--ANYEQLEFVGDAVVRLAAAVVLWETYPDCPVGDFAAIRSVLVSD 88

Query: 82  ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIEVAGTFVD 140
              +Q+ARE  L  ++ V+     D     + + AD  E+++ ALYL    +E+   ++D
Sbjct: 89  RILAQLAREYSLQLYLLVAGSATSDKIGLESRL-ADAFEAVLGALYLSTNNLELIRPWLD 147

Query: 141 KYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
            + K+ A  ++    R + K  LQEW  A+F V PEY+VT
Sbjct: 148 FHLKKLATEIRLDPARLNYKAALQEWTQAEFKVLPEYRVT 187


>gi|13508284|ref|NP_110234.1| ribonuclease III [Mycoplasma pneumoniae M129]
 gi|2500551|sp|P75233|RNC_MYCPN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|1673968|gb|AAB95945.1| ribonuclease III [Mycoplasma pneumoniae M129]
 gi|301633525|gb|ADK87079.1| ribonuclease III [Mycoplasma pneumoniae FH]
          Length = 282

 Score = 75.1 bits (183), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 72/127 (56%), Gaps = 8/127 (6%)

Query: 19  NRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
           N    E A  HSS  +  ++   SY+RLEFLGD ++  +++  LF  + +  EG L+   
Sbjct: 31  NWQFYEDAFVHSSYVNENEDARASYDRLEFLGDALIDFIVAKKLFELYPNYNEGMLTRTK 90

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
             +V  E  +++ +EL+  +FI++   +      +  ++  DV+E+L+AA+Y D GIE A
Sbjct: 91  IEIVKGENLNRIGKELNFGNFIKLGKGM-----PYTETLFGDVLEALVAAIYEDLGIEKA 145

Query: 136 GTFVDKY 142
             FV+++
Sbjct: 146 NQFVEEH 152


>gi|330982653|gb|EGH80756.1| ribonuclease III [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 176

 Score = 74.7 bits (182), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 85/170 (50%), Gaps = 3/170 (1%)

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF     A+EG+LS     LV  ET + +AR  DL  ++R+ S   K       SI AD 
Sbjct: 2   LFERSPQAREGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADA 61

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           +E+LI A+YLD G+E A   V  +      +L      +D KT LQE+  ++    P Y+
Sbjct: 62  LEALIGAIYLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACELPRYE 121

Query: 177 VTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225
           V    G  H   F V  EI+ L   ++G   S+R AEQVAAA  L   G+
Sbjct: 122 VVDIQGEPHCRTFFVECEINLLNEKSRGQGVSRRIAEQVAAAAALIALGV 171


>gi|195026766|ref|XP_001986330.1| GH21300 [Drosophila grimshawi]
 gi|193902330|gb|EDW01197.1| GH21300 [Drosophila grimshawi]
          Length = 1324

 Score = 74.7 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 66/225 (29%), Positives = 107/225 (47%), Gaps = 14/225 (6%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +  E  +G  F +  LL +A T  SI  +H    S +RLEFLGD +L L+ S  L+ HF 
Sbjct: 968  TKFEDSVGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRHFP 1027

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
               EG LS+  +SLV+  T + V  +L +  +  V ++ + D+    T  +AD++E+ + 
Sbjct: 1028 EHHEGHLSLLRSSLVNNRTQAVVCDDLGMPQYA-VYANPKADL---KTKDRADLLEAFLG 1083

Query: 125  ALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV------TPEYK 176
            ALY+D G+     F  V  + + +     +   D K++LQ+       +       P YK
Sbjct: 1084 ALYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPYYK 1143

Query: 177  VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V   +GP +   + V V       A     S + AE  AA + L+
Sbjct: 1144 VVEATGPTNTRVYKVAVYFRSKRLATASGSSIQQAEMNAAKQALE 1188



 Score = 48.9 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 10/121 (8%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
           T S+I+H+     ERLEFLGD ++  L S  LF  F   +EG L+    ++V  +  + +
Sbjct: 817 TLSNITHN-----ERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALL 871

Query: 88  ARELDLASFIRVSSDLRKDVCSFMT--SIQADVVESLIAALYLDGGIEVAG-TFVDKYWK 144
           A++L L  F+  +     D+C  +      A+  E+L+ AL LDGGI+VA   F D  ++
Sbjct: 872 AKKLQLEEFMLYAHG--SDLCHELELRHAMANCFEALMGALLLDGGIKVADEVFTDALFR 929

Query: 145 Q 145
           Q
Sbjct: 930 Q 930


>gi|281424694|ref|ZP_06255607.1| ribonuclease III [Prevotella oris F0302]
 gi|281401064|gb|EFB31895.1| ribonuclease III [Prevotella oris F0302]
          Length = 363

 Score = 74.7 bits (182), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 111/226 (49%), Gaps = 15/226 (6%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           YS+L   +G+   N S  + AL H SI     +    + ERLEFLGD IL  ++  +++ 
Sbjct: 20  YSSLYAILGFYPRNISYYKLALMHKSIMRRNAKGKPVNNERLEFLGDAILDAIVGDIVYQ 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF   +EG L+   + LV  +T +++A EL ++  I +S+       S+M     +  E+
Sbjct: 80  HFPGKREGFLTNTRSKLVQRDTLNKLANELGISKLI-LSNGRSSSHNSYMG---GNAFEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178
           L+ A+YLD G +    F+      + +   K      + K++L EW+  K  V   +++ 
Sbjct: 136 LVGAVYLDRGYDACMNFMQHRILTQMINIDKVAYKEVNFKSKLIEWSQ-KNRVKLNFEI- 193

Query: 179 FRSGPDHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              G D +  P F   V I G+    G+  SK+ ++Q+A    L++
Sbjct: 194 LEQGKDKNGSPIFNYKVVIEGIDGCDGVGYSKKESQQLACKLTLEQ 239


>gi|195402669|ref|XP_002059927.1| GJ15113 [Drosophila virilis]
 gi|194140793|gb|EDW57264.1| GJ15113 [Drosophila virilis]
          Length = 1306

 Score = 74.7 bits (182), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 107/225 (47%), Gaps = 14/225 (6%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +  E  IG  F +  LL +A T  SI  +H    S +RLEFLGD +L L+ S  L+ HF 
Sbjct: 957  TKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRHFP 1016

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
               EG LS+  +SLV+  T + V  +L +  +  V ++ + D+    T  +AD++E+ + 
Sbjct: 1017 EHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYA-VYANPKADL---KTKDRADLLEAFLG 1072

Query: 125  ALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV------TPEYK 176
            ALY+D G+     F  V  + + +     +   D K++LQ+       +       P YK
Sbjct: 1073 ALYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPYYK 1132

Query: 177  VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V   SGP +   + V V       A     S + AE  AA + L+
Sbjct: 1133 VVEASGPTNTRVYKVAVYFRSKRLATASGSSIQQAEMNAAKQALE 1177



 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 10/121 (8%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
           T S+I+H+     ERLEFLGD ++  L S  LF  F   +EG L+    ++V  +  + +
Sbjct: 806 TVSNITHN-----ERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALL 860

Query: 88  ARELDLASFIRVSSDLRKDVCSFMT--SIQADVVESLIAALYLDGGIEVAG-TFVDKYWK 144
           A++L L  F+  +     D+C  +      A+  E+L+ AL LDGGI+VA   F D  ++
Sbjct: 861 AKKLQLEEFMLYAHG--SDLCHELELRHAMANCFEALMGALLLDGGIKVADEVFTDALFR 918

Query: 145 Q 145
           Q
Sbjct: 919 Q 919


>gi|284039991|ref|YP_003389921.1| ribonuclease III [Spirosoma linguale DSM 74]
 gi|283819284|gb|ADB41122.1| ribonuclease III [Spirosoma linguale DSM 74]
          Length = 253

 Score = 74.7 bits (182), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 101/203 (49%), Gaps = 17/203 (8%)

Query: 13  IGYAFANRSLLEKALTHSSISHS-----YQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           IG   +N  L + AL H+S S +     ++ES ERLE+LGD +LG++I+  LF  +    
Sbjct: 35  IGARPSNLGLYQLALRHTSASKATAIEGFRESNERLEYLGDAVLGMVIAEFLFKKYPYKD 94

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG L+   + +V+ ET + +AR++ L   I       + + +  TS+  D +E+L+ A+Y
Sbjct: 95  EGFLTEIRSRIVNRETLNGIARKIGLDQLIEYDGSRTRSLPA-RTSMYGDALEALVGAVY 153

Query: 128 LDGGIEVAGTFVDK-----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           LD G   +  F+ K     Y  +  +++     + K+ L EWA  + G    +++    G
Sbjct: 154 LDKGFRFSRRFILKDLLAHYDIESVVQNNG---NYKSRLIEWAQRE-GKEIRFEIVSEKG 209

Query: 183 PDHDPRFT--VVVEISGLAPAQG 203
             H   F   VV++    A   G
Sbjct: 210 NSHFREFISQVVIDDEPFATGSG 232


>gi|298492780|ref|YP_003722957.1| ribonuclease III ['Nostoc azollae' 0708]
 gi|298234698|gb|ADI65834.1| ribonuclease III ['Nostoc azollae' 0708]
          Length = 227

 Score = 74.7 bits (182), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 86/190 (45%), Gaps = 8/190 (4%)

Query: 16  AFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            F    LL +ALTH S  +      E  ERLEFLGD IL  +    L+  +    E EL+
Sbjct: 6   TFNREKLLCQALTHRSYVNENPGEGEHNERLEFLGDAILNFISGQYLYRRYPQKGEDELT 65

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
            R ++LV  +  ++ A E+ L   +R+     +D      ++ +   E++I A YLD   
Sbjct: 66  RRRSALVEEKQLAKFAIEVGLDFRMRLGKGAIRDGGFQNPNLLSSTFEAVIGAYYLDNNC 125

Query: 133 EVAG--TFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR-SGPDHDP 187
           EV    T ++  +   +  +   +   D+K   QEW   + G  P   VT +  GP H P
Sbjct: 126 EVEPIRTIIEPLFDSVSEDIIEPRSNVDSKNRFQEWVQKEIGANPPKYVTEQIGGPSHAP 185

Query: 188 RFTVVVEISG 197
            F   V + G
Sbjct: 186 EFIARVLVDG 195


>gi|260061436|ref|YP_003194516.1| putative ribonuclease III [Robiginitalea biformata HTCC2501]
 gi|88785568|gb|EAR16737.1| putative ribonuclease III [Robiginitalea biformata HTCC2501]
          Length = 245

 Score = 74.7 bits (182), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 105/213 (49%), Gaps = 16/213 (7%)

Query: 13  IGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +G+   +  + ++A  H S++    + +  +YERLEFLGD +LG +IS  L+N   +  E
Sbjct: 26  LGFKPKSLEVYKRAFLHRSVNKKDKNGHPMNYERLEFLGDSMLGTIISKHLYNEVPAGDE 85

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G L+   + +VS +  +++ ++L L +F+    + R     F  +I  +V E+L+ A+YL
Sbjct: 86  GYLTKMRSKIVSRKHLNELGKDLGLLNFV----ESRIPKAHFGENIHGNVFEALVGAIYL 141

Query: 129 DGGIEVAGTF-----VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           D G +    F     ++ Y     L+        K+ + EW   K     E++V   +G 
Sbjct: 142 DRGYKYCEKFIQSRVIEPYVDIEQLEGQVI--SYKSLVIEWCQ-KQKKEFEFEVYEDTGN 198

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           D    F V + I G   A+    SK+ AE+ A+
Sbjct: 199 DPVKHFAVKLHIDGRILAKARATSKKKAEEKAS 231


>gi|188995567|ref|YP_001929819.1| putative ribonuclease III [Porphyromonas gingivalis ATCC 33277]
 gi|188595247|dbj|BAG34222.1| putative ribonuclease III [Porphyromonas gingivalis ATCC 33277]
          Length = 261

 Score = 74.7 bits (182), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 103/218 (47%), Gaps = 14/218 (6%)

Query: 13  IGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +G+  +  +  E A  HSS S      Y+ + ERLEFLGD +L   IS  L+       E
Sbjct: 30  LGFKPSRIAFYELAFRHSSCSLVDDEGYRLNNERLEFLGDSVLATAISGYLYRQHPHWDE 89

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G++S R +++V  +  + VA++L L  F+ V    R ++    + I  + +E+LI A+YL
Sbjct: 90  GDMSQRRSAIVKRQINNVVAKKLRLDRFLIV----RGEISQMSSDIMGNTLEALIGAIYL 145

Query: 129 DGGIEVAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           D G + A  FV       + +          + K+ L EWA  K  +  E+++       
Sbjct: 146 DKGYQAAEKFVLTRFIPVFHELEDSLTDTTTNYKSLLLEWAQ-KHHLNLEFRLISEPKRA 204

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           H   F   V + G     G+  +K+ A Q AA + L++
Sbjct: 205 HG-HFNYAVFVDGHRIGSGIGMNKKEAHQNAAHDALEK 241


>gi|91215536|ref|ZP_01252507.1| putative ribonuclease III [Psychroflexus torquis ATCC 700755]
 gi|91186488|gb|EAS72860.1| putative ribonuclease III [Psychroflexus torquis ATCC 700755]
          Length = 245

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 104/222 (46%), Gaps = 12/222 (5%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIST 57
           + + +  +++ I     + S+ ++A THSS+     E    SYERLEFLGD ILG +IST
Sbjct: 16  NGIFFKKIQRIIKVKHKSLSIYKQAFTHSSLKLKDDEGKFISYERLEFLGDSILGAVIST 75

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF +     EG L+   + +VS +  + +    DLA        + K       +I  +
Sbjct: 76  YLFENAPHGDEGYLTKMRSKIVSRKNLNLLGESFDLADLTLSEIPVEK----MGKNINGN 131

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA---KTELQEWAHAKFGVTPE 174
           + E+LI A+Y+D G +    F+ K   +  +   K  +     K+ + EW   K     E
Sbjct: 132 LFEALIGAIYVDKGFKDCEAFIYKKVIREDVDLAKLEKRVMSYKSLMIEWCQ-KNKFPFE 190

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           + +    G D +  F V + I+     +  + SK+ AE+ A+
Sbjct: 191 FVIEDDFGKDEEKHFAVKLIINNEISGKARETSKKRAEEKAS 232


>gi|282877263|ref|ZP_06286095.1| RNase3 domain protein [Prevotella buccalis ATCC 35310]
 gi|281300604|gb|EFA92941.1| RNase3 domain protein [Prevotella buccalis ATCC 35310]
          Length = 350

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 111/230 (48%), Gaps = 18/230 (7%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           YS+L + IG+   + S  + AL H S+     +    + ERLEFLGD IL   +  +++ 
Sbjct: 20  YSSLYRIIGFYPHDISYYKLALMHKSVMRRNAKGKPVNNERLEFLGDAILDATVGHIVYE 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF   +EG L+   + LV   T +++A E+ +   I +SS       S+M     +  E+
Sbjct: 80  HFPGKREGFLTNTRSKLVQRSTLNKLANEMGICKLI-LSSGRNASHNSYMG---GNAFEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178
           L+ A+YLD G +    F+     +  L   K      + K++L EW+  K  V   +K+ 
Sbjct: 136 LVGAIYLDRGYDACMRFMKDRILKEMLNIDKVAYKEVNFKSKLIEWSQ-KNKVKINFKL- 193

Query: 179 FRSGPDH--DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA---EVLKRE 223
              G D   +P F    E+ G+    G   SK+ ++Q+A+    E LKR+
Sbjct: 194 LNQGQDKNGNPVFKYAAELEGIEGCSGEGFSKKESQQLASKLTLEQLKRK 243


>gi|226528435|ref|NP_001141713.1| hypothetical protein LOC100273842 [Zea mays]
 gi|194705648|gb|ACF86908.1| unknown [Zea mays]
          Length = 329

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 79/152 (51%), Gaps = 19/152 (12%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTL 58
           MSA   + +E  +GY F ++SL+E ALTH S    +   ++YERLE+LGD +L  L+S  
Sbjct: 43  MSAKDVTAIEALLGYCFIDKSLVELALTHGSFYWPNRPGDTYERLEYLGDGVLTCLMSRE 102

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ-- 115
           +F  + + + G L+    + V  E  ++VA    L  F+R  +  L+  +C F+  ++  
Sbjct: 103 VFRTYRTLQPGPLTRLRAANVDTEKLARVAVHRGLHRFLRHKAPKLQDQICFFIEEMRKY 162

Query: 116 --------------ADVVESLIAALYLDGGIE 133
                          D+VESLI A+YLD   +
Sbjct: 163 PVHSNGLLDPPKVLCDIVESLIGAIYLDSNFD 194


>gi|17137682|ref|NP_477436.1| drosha [Drosophila melanogaster]
 gi|4868118|gb|AAD31170.1| ribonuclease [Drosophila melanogaster]
 gi|7304132|gb|AAF59169.1| drosha [Drosophila melanogaster]
 gi|68051279|gb|AAY84903.1| LD20030p [Drosophila melanogaster]
          Length = 1327

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 108/225 (48%), Gaps = 14/225 (6%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +  E  IG  F +  LL +A T  SI  +H    S +RLEFLGD +L L+ S  L+ HF 
Sbjct: 976  TKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRHFP 1035

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
               EG LS+  +SLV+  T + V  +L +  +  V ++ + D+    T  +AD++E+ + 
Sbjct: 1036 EHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYA-VYANPKADL---KTKDRADLLEAFLG 1091

Query: 125  ALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWA---HAKFGVTPE---YK 176
            ALY+D G+     F  V  + + +     +   D K++LQ+         G  P+   YK
Sbjct: 1092 ALYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPYYK 1151

Query: 177  VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V   SGP +   + V V       A     S + AE  AA + L+
Sbjct: 1152 VVEASGPTNTRVYKVAVYFRSKRLATSSGSSIQQAEMNAAKQALE 1196



 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 10/121 (8%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
           T S+I+H+     ERLEFLGD ++  L S  LF  F   +EG L+    ++V  +  + +
Sbjct: 825 TVSNITHN-----ERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALL 879

Query: 88  ARELDLASFIRVSSDLRKDVCSFMT--SIQADVVESLIAALYLDGGIEVAG-TFVDKYWK 144
           A++L L  F+  +     D+C  +      A+  E+L+ AL LDGGI+VA   F D  ++
Sbjct: 880 AKKLQLEEFMLYAHG--SDLCHELELRHAMANCFEALMGALLLDGGIKVADEVFTDALFR 937

Query: 145 Q 145
           Q
Sbjct: 938 Q 938


>gi|228470695|ref|ZP_04055546.1| ribonuclease III [Porphyromonas uenonis 60-3]
 gi|228307552|gb|EEK16548.1| ribonuclease III [Porphyromonas uenonis 60-3]
          Length = 243

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 105/224 (46%), Gaps = 16/224 (7%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNH 62
           ++L  RIG       L   A+ H S +       + + ERLEFLGD +L   I T L++ 
Sbjct: 13  TSLFDRIGIVPVRTDLYLLAMRHRSCTIIGEGGEKLNNERLEFLGDAVLEASICTYLYHL 72

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASF-IRVSSDLRKDVCSFMTSIQADVVES 121
             +  EG+LS   +SLVS    ++V R L L  + I V S L   V      I  + VE+
Sbjct: 73  HPTWDEGDLSKCKSSLVSRPVNNEVGRRLHLERYIIMVPSALDNSV-----DIYGNTVEA 127

Query: 122 LIAALYLDGGIEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           LI A+YLD G      FV  Y    ++     +    ++ K+EL EW   K  ++ E+++
Sbjct: 128 LIGAIYLDQGYARTQDFVRDYILPTYRDMREHTVASIQNYKSELIEWVQ-KHHLSHEFRL 186

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
                  HD  F   V I G    +G   SK+ A+Q AA + L+
Sbjct: 187 EEHQTMPHD-HFIYSVWIDGKPVGRGAGSSKKRAQQEAARDTLE 229


>gi|148241236|ref|YP_001226393.1| ribonuclease III [Synechococcus sp. RCC307]
 gi|147849546|emb|CAK27040.1| Ribonuclease III [Synechococcus sp. RCC307]
          Length = 236

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 98/208 (47%), Gaps = 11/208 (5%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           L  ALTH+S     + ++E LEFLGD +L L  +  L  +      GE S     LVS  
Sbjct: 25  LHTALTHTSAG--LEVNHEELEFLGDAVLRLACAEFLEENNSKLSVGERSAFRAQLVSDR 82

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL-----DGGIEVAGT 137
             +++A EL L   I+  S    D  +   +++A+  E+L+ A+YL     DGG+     
Sbjct: 83  WLAELAAELQLDGLIKQGSATAADT-TARATVRAECCEALVGAVYLAWGGADGGLHAVRQ 141

Query: 138 FVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVE 194
           ++D  W++  L+      R + K+ LQE   A+    P Y  T  +    D  RF  VV 
Sbjct: 142 WLDPQWQRSCLELAEDPHRHNWKSALQELTQAQQAGLPSYSTTEENSNHGDQRRFRSVVS 201

Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           ++      G   S+R AEQ AA   L++
Sbjct: 202 VNAKEKGCGWGPSRRLAEQEAARAALEQ 229


>gi|194863666|ref|XP_001970553.1| GG23313 [Drosophila erecta]
 gi|190662420|gb|EDV59612.1| GG23313 [Drosophila erecta]
          Length = 1329

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 108/225 (48%), Gaps = 14/225 (6%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +  E  IG  F +  LL +A T  SI  +H    S +RLEFLGD +L L+ S  L+ HF 
Sbjct: 975  TKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRHFP 1034

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
               EG LS+  +SLV+  T + V  +L +  +  V ++ + D+    T  +AD++E+ + 
Sbjct: 1035 EHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYA-VYANPKADL---KTKDRADLLEAFLG 1090

Query: 125  ALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWA---HAKFGVTPE---YK 176
            ALY+D G+     F  V  + + +     +   D K++LQ+         G  P+   YK
Sbjct: 1091 ALYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPYYK 1150

Query: 177  VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V   SGP +   + V V       A     S + AE  AA + L+
Sbjct: 1151 VVEASGPTNTRVYKVAVYFRSKRLATSSGSSIQQAEMNAAKQALE 1195



 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 10/121 (8%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
           T S+I+H+     ERLEFLGD ++  L S  LF  F   +EG L+    ++V  +  + +
Sbjct: 824 TVSNITHN-----ERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALL 878

Query: 88  ARELDLASFIRVSSDLRKDVCSFMT--SIQADVVESLIAALYLDGGIEVAG-TFVDKYWK 144
           A++L L  F+  +     D+C  +      A+  E+L+ AL LDGGI+VA   F D  ++
Sbjct: 879 AKKLQLEEFMLYAHG--SDLCHELELRHAMANCFEALMGALLLDGGIKVADEVFTDALFR 936

Query: 145 Q 145
           Q
Sbjct: 937 Q 937


>gi|195624966|gb|ACG34313.1| endoribonuclease Dicer [Zea mays]
          Length = 329

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 79/152 (51%), Gaps = 19/152 (12%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTL 58
           MSA   + +E  +GY F ++SL+E ALTH S    +   ++YERLE+LGD +L  L+S  
Sbjct: 43  MSAKDVTAIEALLGYCFIDKSLVELALTHGSFYWPNRPGDTYERLEYLGDGVLTCLMSRE 102

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ-- 115
           +F  + + + G L+    + V  E  ++VA    L  F+R  +  L+  +C F+  ++  
Sbjct: 103 VFRTYRTLQPGPLTRLRAANVDTEKLARVAVHRGLYRFLRHKAPKLQDQICFFIEEMRKY 162

Query: 116 --------------ADVVESLIAALYLDGGIE 133
                          D+VESLI A+YLD   +
Sbjct: 163 PVHSNGLLDPPKVLCDIVESLIGAIYLDSNFD 194


>gi|34541386|ref|NP_905865.1| ribonuclease III [Porphyromonas gingivalis W83]
 gi|34397703|gb|AAQ66764.1| ribonuclease III [Porphyromonas gingivalis W83]
          Length = 237

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 103/218 (47%), Gaps = 14/218 (6%)

Query: 13  IGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +G+  +  +  E A  HSS S      Y+ + ERLEFLGD +L   IS  L+       E
Sbjct: 6   LGFKPSRIAFYELAFRHSSCSLVDDEGYRLNNERLEFLGDSVLATAISGYLYRQHPHWDE 65

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G++S R +++V  +  + VA++L L  F+ V    R ++    + I  + +E+LI A+YL
Sbjct: 66  GDMSQRRSAIVKRQINNVVAKKLRLDRFLIV----RGEISQMSSDIMGNTLEALIGAIYL 121

Query: 129 DGGIEVAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           D G + A  FV       + +          + K+ L EWA  K  +  E+++       
Sbjct: 122 DKGYQAAEKFVLTRFIPVFHELEDSLTDTTTNYKSLLLEWAQ-KHHLNLEFRLISEPKRA 180

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           H   F   V + G     G+  +K+ A Q AA + L++
Sbjct: 181 HG-HFNYAVFVDGHRIGSGIGMNKKEAHQNAAHDALEK 217


>gi|194476942|ref|YP_002049121.1| putative ribonuclease III [Paulinella chromatophora]
 gi|171191949|gb|ACB42911.1| putative ribonuclease III [Paulinella chromatophora]
          Length = 246

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 109/225 (48%), Gaps = 10/225 (4%)

Query: 4   LRYSTLEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           LR   LEK  G    NR L  +++ALTH+S       ++E+LEFLGD +L L  +  L +
Sbjct: 17  LRGLGLEKLDGINLRNRDLAMVDEALTHTSAELGI--NHEKLEFLGDAVLRLAAAEHLLS 74

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           H+ +   G+ S     LVS    +++     + + IR+ +    D  +  T ++A+  E+
Sbjct: 75  HYPTLSVGQSSALRAQLVSDRWLAEIGESCGIETVIRIGAAASGDQAARQT-LRAESTEA 133

Query: 122 LIAALY--LDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           LI ALY   +  +E    ++  +W++   AL +  +  + K+ LQEW+ A+    P Y+ 
Sbjct: 134 LIGALYSSWENSLEPVNHWLSLHWQRSSIALLTDPYCYNWKSALQEWSQAEGLGLPNYRS 193

Query: 178 TFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              +    D  RF   V I      +G   ++R AEQ AA   L 
Sbjct: 194 KEINRLHGDLSRFHSCVFIETKYLGEGFGGARREAEQQAARSALN 238


>gi|288928881|ref|ZP_06422727.1| ribonuclease 3 (Ribonuclease III) (RNase III) [Prevotella sp. oral
           taxon 317 str. F0108]
 gi|288329865|gb|EFC68450.1| ribonuclease 3 (Ribonuclease III) (RNase III) [Prevotella sp. oral
           taxon 317 str. F0108]
          Length = 459

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 115/226 (50%), Gaps = 15/226 (6%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61
           YS+L + +G+   N S  + AL H S+    ++    + ERLEFLGD IL  ++  +++ 
Sbjct: 20  YSSLFEILGFYPRNISYYKLALMHKSVMRRGANGKPVNNERLEFLGDAILDAIVGDIVYR 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF   +EG L+   + LV  ET +++A+E+ ++  I +SS       S+M     +  E+
Sbjct: 80  HFPGKREGFLTNTRSKLVQRETLNRLAQEMGISRLI-LSSGHTSSHNSYMG---GNAFEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178
           L+ A+YLD G      F++K    + +   K      + K++L EW+  K  V  ++ + 
Sbjct: 136 LVGAIYLDRGYSSCMRFMEKRILAKMINIDKVAYKEVNFKSKLIEWSQ-KNRVKLDF-IV 193

Query: 179 FRSGPDHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              G D +  P F   V + G+    G   SK+ ++Q+A+   L+R
Sbjct: 194 KEQGKDKNGSPFFLFCVHLEGVEGCNGRGYSKKESQQLASKLTLER 239


>gi|317504409|ref|ZP_07962390.1| ribonuclease III [Prevotella salivae DSM 15606]
 gi|315664455|gb|EFV04141.1| ribonuclease III [Prevotella salivae DSM 15606]
          Length = 364

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 111/225 (49%), Gaps = 13/225 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           YS+L   +G+   + S  + AL H SI     +    + ERLEFLGD IL  ++  +++ 
Sbjct: 20  YSSLYTILGFYPRDISYYKLALMHKSIMKRNAKGKPVNNERLEFLGDAILDAIVGHIVYQ 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF   +EG L+   + LV  ET +++A EL +   I +S+       S+M     +  E+
Sbjct: 80  HFPGKREGFLTNTRSKLVQRETLNKLANELGINQLI-LSNGRSSSHNSYMG---GNAFEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178
           L+ A+YLD G +    F+      + +   K      + K++L EW+  K  V   + + 
Sbjct: 136 LVGAVYLDRGYDACMNFMKNRILAQMINIDKVAYKEVNFKSKLIEWSQ-KNRVRLTFDIL 194

Query: 179 FRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            +S  ++  P F   V I G+    G+  SK+ ++Q+A+   L+R
Sbjct: 195 EQSKDNNGSPVFNYKVVIEGIDGCNGVGYSKKESQQLASKLTLER 239


>gi|229818312|ref|ZP_04448593.1| hypothetical protein BIFANG_03612 [Bifidobacterium angulatum DSM
           20098]
 gi|229784182|gb|EEP20296.1| hypothetical protein BIFANG_03612 [Bifidobacterium angulatum DSM
           20098]
          Length = 246

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/204 (34%), Positives = 97/204 (47%), Gaps = 20/204 (9%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL +ALTH S +H +   + YERLEFLGD +L L+ +  LF       EGEL+      V
Sbjct: 38  LLVQALTHRSFAHEHPGAKHYERLEFLGDAVLELISTETLFRLHPDMSEGELAKMRAKAV 97

Query: 80  SAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE----V 134
           S E  S +AR +L +  +I +         +  +SI  D+VESLI A +L+ GI+    V
Sbjct: 98  SEEALSAIARTKLHVEPYILLGHGEATQGGAQKSSILCDIVESLIGATFLEHGIDGARKV 157

Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV- 193
               +D    + A +      D KT L   AH      P Y +   SGP++   FT  V 
Sbjct: 158 VHRLIDDTLAEVATEGPAL--DWKTSLTVKAHHLGKGEPVYHMAV-SGPEYAQVFTARVS 214

Query: 194 -----EISGLAPAQGMDCSKRAAE 212
                EI G+    G   SKR A+
Sbjct: 215 LGDDEEILGV----GKGSSKRKAQ 234


>gi|330889504|gb|EGH22165.1| ribonuclease III [Pseudomonas syringae pv. mori str. 301020]
          Length = 171

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/166 (36%), Positives = 84/166 (50%), Gaps = 3/166 (1%)

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F  A+EG+LS     LV  ET + +AR  DL  ++R+ S   K       SI AD +E+L
Sbjct: 1   FPQAREGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADALEAL 60

Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           I A+YLD G+E A   V  +      +L      +D KT LQE+  ++    P Y+V   
Sbjct: 61  IGAIYLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACELPRYEVVDI 120

Query: 181 SGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225
            G  H   F V  EI+ L   ++G   S+R AEQVAAA  L   G+
Sbjct: 121 QGEPHCRTFFVECEINLLNEKSRGQGVSRRIAEQVAAAAALIALGV 166


>gi|256077012|ref|XP_002574802.1| ribonuclease III [Schistosoma mansoni]
 gi|238660017|emb|CAZ31035.1| ribonuclease III, putative [Schistosoma mansoni]
          Length = 907

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 82/167 (49%), Gaps = 29/167 (17%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTH-SSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           R+  L++++GY F    LL +A+TH SSI+  Y  +Y+RLEFLGD ILG +IS  LF   
Sbjct: 683 RFFQLQEKLGYYFKGIELLAEAMTHQSSINKQYWGNYQRLEFLGDSILGHIISNYLFQKC 742

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFI-------------------------- 97
            ++  G L+   +++VS    + V  E D+  FI                          
Sbjct: 743 PNSSPGALTTARSTVVSNINLANVVVEHDIYPFIDFGNCSLKACIDDIKSIHRQTDSHFE 802

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLD--GGIEVAGTFVDKY 142
           R+    +K        + ADV ES++ A+++D  G  +VA + + ++
Sbjct: 803 RIELITKKVSSGLNVKVLADVFESILGAIFVDSNGNHQVASSIIHRF 849


>gi|195474532|ref|XP_002089545.1| GE19158 [Drosophila yakuba]
 gi|194175646|gb|EDW89257.1| GE19158 [Drosophila yakuba]
          Length = 1328

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 108/225 (48%), Gaps = 14/225 (6%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +  E  IG  F +  LL +A T  SI  +H    S +RLEFLGD +L L+ S  L+ HF 
Sbjct: 976  TKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRHFP 1035

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
               EG LS+  +SLV+  T + V  +L +  +  V ++ + D+    T  +AD++E+ + 
Sbjct: 1036 EHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYA-VYANPKADL---KTKDRADLLEAFLG 1091

Query: 125  ALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWA---HAKFGVTPE---YK 176
            ALY+D G+     F  V  + + +     +   D K++LQ+         G  P+   YK
Sbjct: 1092 ALYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPYYK 1151

Query: 177  VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V   SGP +   + V V       A     S + AE  AA + L+
Sbjct: 1152 VVEASGPTNTRVYKVAVYFRSKRLATSSGSSIQQAEMNAAKQALE 1196



 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 10/121 (8%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
           T S+I+H+     ERLEFLGD ++  L S  LF  F   +EG L+    ++V  +  + +
Sbjct: 825 TVSNITHN-----ERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALL 879

Query: 88  ARELDLASFIRVSSDLRKDVCSFMT--SIQADVVESLIAALYLDGGIEVAG-TFVDKYWK 144
           A++L L  F+  +     D+C  +      A+  E+L+ AL LDGGI+VA   F D  ++
Sbjct: 880 AKKLQLEEFMLYAHG--SDLCHELELRHAMANCFEALMGALLLDGGIKVADEVFTDALFR 937

Query: 145 Q 145
           Q
Sbjct: 938 Q 938


>gi|225460893|ref|XP_002278706.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 364

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/145 (34%), Positives = 79/145 (54%), Gaps = 21/145 (14%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +E+ I Y F N+ LLE+ALTHSS + S   SY+RLEF+GD  LG  +S  +F  + S   
Sbjct: 35  VERIINYKFRNKKLLEEALTHSSYTDS--ASYQRLEFIGDAALGCALSNYVFLAYPSLDP 92

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQ------------ 115
           G+LS+   + +S E  ++VA  + L  ++R ++    D V  F  ++Q            
Sbjct: 93  GQLSLIRAANISTEKLARVAVRVGLYQYVRHNAAALDDKVREFALAVQEEGDSVLYGGSV 152

Query: 116 ------ADVVESLIAALYLDGGIEV 134
                 AD+VES+ AA+Y+D   ++
Sbjct: 153 KAPKFLADIVESVAAAIYVDCNFDL 177


>gi|297737474|emb|CBI26675.3| unnamed protein product [Vitis vinifera]
          Length = 337

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/145 (34%), Positives = 79/145 (54%), Gaps = 21/145 (14%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +E+ I Y F N+ LLE+ALTHSS + S   SY+RLEF+GD  LG  +S  +F  + S   
Sbjct: 8   VERIINYKFRNKKLLEEALTHSSYTDS--ASYQRLEFIGDAALGCALSNYVFLAYPSLDP 65

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQ------------ 115
           G+LS+   + +S E  ++VA  + L  ++R ++    D V  F  ++Q            
Sbjct: 66  GQLSLIRAANISTEKLARVAVRVGLYQYVRHNAAALDDKVREFALAVQEEGDSVLYGGSV 125

Query: 116 ------ADVVESLIAALYLDGGIEV 134
                 AD+VES+ AA+Y+D   ++
Sbjct: 126 KAPKFLADIVESVAAAIYVDCNFDL 150


>gi|45359089|ref|NP_988646.1| ribonuclease III family protein [Methanococcus maripaludis S2]
 gi|45047964|emb|CAF31082.1| Ribonuclease III family:Double-stranded RNA binding (DsRBD) domain
           [Methanococcus maripaludis S2]
          Length = 230

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 103/221 (46%), Gaps = 7/221 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
            +  L  ++   F + ++ ++A  HSS  +  +    E  ERLE+LGD +L L+IS  LF
Sbjct: 4   NFEKLLSKLDIQFNDLNIFKRAFMHSSYVNEQKNTNLEDNERLEYLGDAVLDLIISEYLF 63

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
              ++  EGE+S      V        A++L   +++ +             +I +DV E
Sbjct: 64  KK-ENLSEGEMSKLRAKYVCESALFTYAKKLKFNNYVLLGKGEINSKGYNKPAIVSDVFE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + IAA+YLD G++    FV ++      +S K    D KT+LQE+       +  Y    
Sbjct: 123 AFIAAIYLDQGLDSVKKFVYEFIIPIIEESSKELFIDYKTKLQEFPEL-INKSINYVNLE 181

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            +G  HD +F + V+       +G+  SK+ AE  AA   L
Sbjct: 182 ETGEAHDKKFVIAVKSGRKILGKGIGKSKKEAEMKAAKNAL 222


>gi|258648277|ref|ZP_05735746.1| ribonuclease III [Prevotella tannerae ATCC 51259]
 gi|260852193|gb|EEX72062.1| ribonuclease III [Prevotella tannerae ATCC 51259]
          Length = 284

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 101/211 (47%), Gaps = 20/211 (9%)

Query: 26  ALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
           A  HSS  +  +     + ERLEFLGD +L +++S ++F  F+  +EG L+   + +V  
Sbjct: 40  AFAHSSSEYKGRNGRTVNNERLEFLGDAVLEMVVSDIVFRRFERKREGFLTGTRSKIVQR 99

Query: 82  ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141
            T +Q+A E  ++  +R S        S  ++I  +  E+   ALYLD G   A  F  K
Sbjct: 100 ATLNQLAEETGISKLLRTSM----RATSHNSNIGGNAFEAFFGALYLDRGYRAAYRFFAK 155

Query: 142 -----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV-TFRSGPDHDPRFTVVVEI 195
                +    A+   K   + K++L EW+  K  +  E+K+    +   + P F   V +
Sbjct: 156 RILGVHINLEAV--AKKEENFKSKLLEWSQ-KNRLRAEFKLDRTENNASNGPVFYTTVRL 212

Query: 196 SGLAPAQGMDCSKRAAEQVAAAEV---LKRE 223
            GL   +G   SK+ ++Q AA      LKRE
Sbjct: 213 EGLEAGKGSGYSKKESQQKAAKAALMKLKRE 243


>gi|86608239|ref|YP_477001.1| ribonuclease III [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556781|gb|ABD01738.1| ribonuclease III [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 240

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 93/193 (48%), Gaps = 10/193 (5%)

Query: 22  LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
           LL++AL H S+    + + +RLE LGD +L +L++  LF  +     GEL+   + L S 
Sbjct: 34  LLDQALIHPSLDG--RRNNDRLELLGDSVLRILVTEFLFQSYPHLSVGELTAIRSDLTSD 91

Query: 82  ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG---TF 138
              +++A    L  ++ V S  + D+      + AD  E+L+ A YL  GI        +
Sbjct: 92  AYLAELADLHGLDRYLEVGSSSQNDLAGRGRRL-ADAFEALLGAFYLSWGIYTLPRLHPW 150

Query: 139 VDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
           +D Y  +R  +      RR+ K  LQE     +G  PEY++   +  +H P FT+ V   
Sbjct: 151 LDPYLHRRVEQWFQDPTRRNPKAALQELTQRLWGSLPEYRLV--AAQEHPPHFTMEVWGQ 208

Query: 197 GLAPAQGMDCSKR 209
           G    +G   SK+
Sbjct: 209 GRCWGRGEGRSKK 221


>gi|72383017|ref|YP_292372.1| RNAse III [Prochlorococcus marinus str. NATL2A]
 gi|72002867|gb|AAZ58669.1| RNAse III [Prochlorococcus marinus str. NATL2A]
          Length = 247

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 107/203 (52%), Gaps = 7/203 (3%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           + ++LTHSS +     +YE LEFLGD +L L+ S  + N +   + GE S   + LVS  
Sbjct: 39  INESLTHSSANSEI--NYENLEFLGDAVLRLIASDFIKNKYPYMQVGERSELRSHLVSDL 96

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI-EVAGTFVDK 141
              +V +++++ S + + +   +D  +  T IQA+  E+LI ALY    I E    ++  
Sbjct: 97  WLEEVGKKIEINSVLVIGNKALRDKSANAT-IQAEATEALIGALYESLTIVEPIKDWLIP 155

Query: 142 YWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYK-VTFRSGPDHDPRFTVVVEISGL 198
           +W++++  + +   +++ K+ LQE   +K    P YK +      D+  RF   V +   
Sbjct: 156 FWEEKSKEVLADPHKKNYKSALQELTQSKGLSIPIYKTIEIDKKHDNPKRFFCNVYVKNR 215

Query: 199 APAQGMDCSKRAAEQVAAAEVLK 221
           + A+G   S + AE+ AA++ LK
Sbjct: 216 SIAEGSGKSIKQAEKNAASKALK 238


>gi|307564748|ref|ZP_07627276.1| ribonuclease III [Prevotella amnii CRIS 21A-A]
 gi|307346470|gb|EFN91779.1| ribonuclease III [Prevotella amnii CRIS 21A-A]
          Length = 266

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 108/225 (48%), Gaps = 13/225 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y +L +  G+   N S  + AL H S+S   ++    + ERLEFLGD +L  +++ +++N
Sbjct: 20  YLSLYQITGFIPHNISYYKTALLHKSVSQRNKKGKLINNERLEFLGDAVLDCVVADIVYN 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F + +EG L+   + +V  ET ++V+ E+ +   ++ +       C    +I  +  E+
Sbjct: 80  RFPNKREGFLTNTRSKIVKRETLNKVSTEMGINKMLKQNGHTITHNC----NIAGNAFEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHA-KFGVTPEYKV 177
           L+ ALY+D G      F+  +     L   K      + K++L EW    K  VT + +V
Sbjct: 136 LVGALYIDHGYNACMIFMRDHVCGCLLSIEKMAYQEMNYKSKLIEWTQKNKVSVTFD-EV 194

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                 + +P F   V I  +   +G   +K+ ++Q AA    KR
Sbjct: 195 KTSIDENGNPIFLAQVVIGNVRCEEGKGFTKKESQQNAAKLTYKR 239


>gi|227538735|ref|ZP_03968784.1| ribonuclease III [Sphingobacterium spiritivorum ATCC 33300]
 gi|227241244|gb|EEI91259.1| ribonuclease III [Sphingobacterium spiritivorum ATCC 33300]
          Length = 229

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 104/222 (46%), Gaps = 23/222 (10%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           L+  +G+   N  L + A  H S++ + +E    S ERLEFLGD ILG +++ LLF  + 
Sbjct: 4   LKNLLGFVPENVRLYQMAFRHKSVATAIKEGAKNSNERLEFLGDAILGSVVAELLFKKYP 63

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT---SIQADVVES 121
              EG L+   + +VS    +Q++R+L L   I+  + +     SF     S+  D  E+
Sbjct: 64  YKDEGFLTEMRSKIVSRANLNQLSRKLGLNELIQYDARM----ISFPNKQGSLLGDAFEA 119

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG-------KFRRDAKTELQEWAHAKFGVTPE 174
           L+ A+YLD G      F   +   R +K+            + K+ L EW     G   +
Sbjct: 120 LVGAVYLDKGY----AFTKSFLLNRIIKTHVDIQLLEVTETNFKSRLIEWCQ-HLGKDVQ 174

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           +  T     +    F++   + G     G D +K++AE++AA
Sbjct: 175 FLPTANPEGESSKMFSIEAIVEGEVCGIGRDFNKKSAEKLAA 216


>gi|159905527|ref|YP_001549189.1| ribonuclease III [Methanococcus maripaludis C6]
 gi|159887020|gb|ABX01957.1| Ribonuclease III [Methanococcus maripaludis C6]
          Length = 229

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 102/221 (46%), Gaps = 7/221 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
            +  L  ++   F + ++ ++A  HSS  +  +    E  ERLE+LGD +L L+IS  LF
Sbjct: 3   NFEKLLSKLDIKFNDLNIFKRAFMHSSYVNEQKNTNLEDNERLEYLGDAVLELIISEYLF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
              ++  EGE+S      V        A++L   +++ +             +I +DV E
Sbjct: 63  KQ-ENLSEGEMSKLRAKYVCESALFTYAKKLKFDNYVLLGKGELISKGYNKPAIVSDVFE 121

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + IAA+YLD G+  A  FV  +      +S K    D KT+LQE+       +  Y    
Sbjct: 122 AFIAAIYLDQGLNSAKKFVYNHILPIIEESSKELFIDYKTKLQEFPEL-INKSINYVNLE 180

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            +G  HD +F V V+       +G+  SK+ AE  AA   L
Sbjct: 181 EAGEPHDKKFVVAVKQDRKILGKGIGKSKKEAEMKAAKNAL 221


>gi|156553364|ref|XP_001601748.1| PREDICTED: similar to ribonuclease iii [Nasonia vitripennis]
          Length = 1381

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 110/228 (48%), Gaps = 14/228 (6%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F++  LL +A T  SI ++     S +RLEFLGD +L L++S  L+  
Sbjct: 1019 KLTKFEEGIGVEFSHIRLLARAFTDRSIGYTNLTLGSNQRLEFLGDTVLQLIVSEYLYKF 1078

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG LS+  +SLV+ +T + V  +L +  +    +          T  +AD++E+ 
Sbjct: 1079 FPEHHEGHLSLLRSSLVNNKTQAVVCDDLGMTQYALYGN----PKAELKTKDRADLLEAF 1134

Query: 123  IAALYLDGGIEVAGTFVDK--YWKQRALKSGKFRRDAKTELQEWA---HAKFGVTPE--- 174
            + ALY+D G+     F +   + + +     +   D K++LQ+         G  P+   
Sbjct: 1135 LGALYVDKGLLHCQVFCNVCFFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPV 1194

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YKV    GP +   +TV V   G   A+    S + AE  +A E L++
Sbjct: 1195 YKVIECKGPTNTRVYTVAVYFQGKRLAKASGHSIQEAEMNSAKEALEK 1242



 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 67/115 (58%), Gaps = 9/115 (7%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
           K  T SSI+H+     ERLEFLGD ++  L S  LF+ F   +EG L+    ++V  +  
Sbjct: 867 KKETESSIAHN-----ERLEFLGDAVVEFLTSIHLFHMFPDLEEGGLATYRAAIVQNQHL 921

Query: 85  SQVARELDLASFIRVS--SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137
           + +A++L+L  ++  +  SDL  D+   +    A+  E+L+ AL+LDGGI +A T
Sbjct: 922 AVLAKKLNLEQYMLYAHGSDLCHDL--ELRHAMANCFEALMGALFLDGGIRIADT 974


>gi|189241708|ref|XP_967454.2| PREDICTED: similar to ribonuclease iii [Tribolium castaneum]
          Length = 1180

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 113/227 (49%), Gaps = 16/227 (7%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64
            +  E+ +G  F +  LL +A T  S+ ++     S +RLEFLGD +L L+ S  L+ +F 
Sbjct: 869  TKFEESVGLQFNHIRLLARAFTDRSVGYTNLTLGSNQRLEFLGDTVLQLIASEYLYKYFP 928

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
               EG LS+  +SLV+  T + V  +L ++++  V ++ + ++    T  +AD++E+ I 
Sbjct: 929  EHHEGHLSLLRSSLVNNRTQAVVCDDLGMSNYA-VYNNPKAEL---KTKDRADLLEAFIG 984

Query: 125  ALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV------TPEYK 176
            ALY+D G+E    F  V  + + +     +   D K++LQ+       +       P YK
Sbjct: 985  ALYVDQGLEFCEVFCQVTLFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPVYK 1044

Query: 177  --VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              V F +   +   +TV V   G   A  M  S + AE  AA + L+
Sbjct: 1045 SVVCFTNSEVNTRVYTVAVYFRGRRLASAMGHSIQQAEMNAAKKALE 1091



 Score = 58.2 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 43/124 (34%), Positives = 67/124 (54%), Gaps = 13/124 (10%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
           T S+I+H+     ERLEFLGD ++  L S  LF  F   +EG L+    ++V  +  + +
Sbjct: 718 TESNITHN-----ERLEFLGDAVVEFLSSIHLFYTFPDLEEGGLATYRAAIVQNQHLAVL 772

Query: 88  ARELDLASFIRVS--SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145
           A+ L L  F+  +  SDL  D+   +    A+  E+L+ AL+LDGGI V    VD+ + +
Sbjct: 773 AKTLKLDQFMLYAHGSDLCHDL--ELRHAMANCFEALMGALFLDGGINV----VDRVFSE 826

Query: 146 RALK 149
              K
Sbjct: 827 TLFK 830


>gi|325123052|gb|ADY82575.1| ribonuclease III, ds RNA [Acinetobacter calcoaceticus PHEA-2]
          Length = 176

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 86/172 (50%), Gaps = 3/172 (1%)

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
           ++I+  L++ + +  EG L+    +LV  E   ++A +L L+  + +S+   K       
Sbjct: 1   MIIANYLYHAYPNENEGRLTRMRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRE 60

Query: 113 SIQADVVESLIAALYLDGG-IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKF 169
           SI AD VE++I A+YLD G + +    V K++      ++     +D K+ LQE+  A+ 
Sbjct: 61  SILADTVEAIIGAIYLDSGDLNLLKDIVLKWYIPYLDHIEPTDQLKDPKSRLQEYLQARK 120

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              P Y+V    G      F V   + GL    G   S+R AEQ AAAE+LK
Sbjct: 121 KPLPVYEVVDIQGDAPHQHFKVECVVDGLPKIYGEGSSRRFAEQAAAAEILK 172


>gi|256077671|ref|XP_002575125.1| ribonuclease III [Schistosoma mansoni]
 gi|238660353|emb|CAZ31358.1| ribonuclease III, putative [Schistosoma mansoni]
          Length = 1531

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 107/228 (46%), Gaps = 11/228 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNH 62
            +  TLE  +G  F +  +L +A+T      ++      +RLEFLGD +L  + +  LF H
Sbjct: 1061 KLCTLEDTLGIKFKHLRVLARAMTIRKTGFNFYTLGDNQRLEFLGDSLLKYVSTDYLFRH 1120

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI--RVSSDLRKDVCSFMTSIQADVVE 120
            F    EG LS+  NSLV+  T + V  EL L  ++  R  +D   +  +     +AD++E
Sbjct: 1121 FPRHHEGHLSLLKNSLVNKYTQASVCSELGLEHYVIHRNKNDNCNNSQNQNVKYRADLLE 1180

Query: 121  SLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQE--WAHAKFGVTPE-- 174
            + I AL++D  +     F    +  R ++    +   DAK++LQ+           PE  
Sbjct: 1181 AFIGALFVDKDLAWVERFCQICFWPRLVEFILKQEWNDAKSKLQQCCLTFRSLNEDPEIA 1240

Query: 175  -YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             YKV   SGP +   + V V   G   A G   S + A+  AA + L+
Sbjct: 1241 HYKVLEHSGPTNQRVYRVGVYFRGQRLATGEGRSVQQAQMEAAKKALE 1288



 Score = 49.7 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 4/96 (4%)

Query: 41   ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
            ERLEFLGD ++ ++ S  LF  F    EG L     ++V  +  +++A  L +  ++  +
Sbjct: 920  ERLEFLGDAVVEVISSIHLFFMFPELSEGHLDAYRQAIVQNQHLAELAVRLGIHKYLLYT 979

Query: 101  SDLRKDVCSFMTSIQA--DVVESLIAALYLDGGIEV 134
              +  D C   T I A  D  E+L+AA+ LD G+++
Sbjct: 980  HSV--DFCYDSTFIYARSDAFEALMAAITLDAGLDI 1013


>gi|256077669|ref|XP_002575124.1| ribonuclease III [Schistosoma mansoni]
 gi|238660352|emb|CAZ31357.1| ribonuclease III, putative [Schistosoma mansoni]
          Length = 1577

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 107/228 (46%), Gaps = 11/228 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNH 62
            +  TLE  +G  F +  +L +A+T      ++      +RLEFLGD +L  + +  LF H
Sbjct: 1107 KLCTLEDTLGIKFKHLRVLARAMTIRKTGFNFYTLGDNQRLEFLGDSLLKYVSTDYLFRH 1166

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI--RVSSDLRKDVCSFMTSIQADVVE 120
            F    EG LS+  NSLV+  T + V  EL L  ++  R  +D   +  +     +AD++E
Sbjct: 1167 FPRHHEGHLSLLKNSLVNKYTQASVCSELGLEHYVIHRNKNDNCNNSQNQNVKYRADLLE 1226

Query: 121  SLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQE--WAHAKFGVTPE-- 174
            + I AL++D  +     F    +  R ++    +   DAK++LQ+           PE  
Sbjct: 1227 AFIGALFVDKDLAWVERFCQICFWPRLVEFILKQEWNDAKSKLQQCCLTFRSLNEDPEIA 1286

Query: 175  -YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             YKV   SGP +   + V V   G   A G   S + A+  AA + L+
Sbjct: 1287 HYKVLEHSGPTNQRVYRVGVYFRGQRLATGEGRSVQQAQMEAAKKALE 1334



 Score = 49.7 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 4/96 (4%)

Query: 41   ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
            ERLEFLGD ++ ++ S  LF  F    EG L     ++V  +  +++A  L +  ++  +
Sbjct: 966  ERLEFLGDAVVEVISSIHLFFMFPELSEGHLDAYRQAIVQNQHLAELAVRLGIHKYLLYT 1025

Query: 101  SDLRKDVCSFMTSIQA--DVVESLIAALYLDGGIEV 134
              +  D C   T I A  D  E+L+AA+ LD G+++
Sbjct: 1026 HSV--DFCYDSTFIYARSDAFEALMAAITLDAGLDI 1059


>gi|255660287|ref|ZP_05405696.1| ribonuclease III [Mycoplasma genitalium G37]
          Length = 271

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 76/147 (51%), Gaps = 8/147 (5%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFN 61
           + +T  K +     N    EKA  H+S  + ++   ESY+RLEFLGD ++  +++  LF 
Sbjct: 26  KLATFLKNLDIFPNNWEFFEKAFIHASYINEHEDVSESYDRLEFLGDALIDFVVAKKLFE 85

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +    EG L+     +V  E  +++  EL L  F+++S+           +   DV+E+
Sbjct: 86  LYPKYNEGLLTRTKIEIVKGENLNRIGMELKLGDFVKLSNG-----AELTENTVGDVLEA 140

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL 148
           L+ A+Y D G++ A  FV+KY  +R  
Sbjct: 141 LVGAIYEDMGMKKATEFVEKYIFERTF 167


>gi|282897359|ref|ZP_06305361.1| Ribonuclease III [Raphidiopsis brookii D9]
 gi|281198011|gb|EFA72905.1| Ribonuclease III [Raphidiopsis brookii D9]
          Length = 240

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 104/200 (52%), Gaps = 7/200 (3%)

Query: 21  SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
            LL+ ALTH ++S S   +YE+LEF+GD ++ L+ + +L+  +     G+ +   + LVS
Sbjct: 30  PLLDLALTHPTVSES--ANYEQLEFVGDAVVRLVAAVVLWESYPDCCVGDFAAIRSVLVS 87

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG-GIEVAGTFV 139
               +++ARE DL  ++ V+     D     + + AD  E+L+ ALYL    + +   ++
Sbjct: 88  DRILARLAREYDLELYLLVAGSATADNVGQESRL-ADAFEALLGALYLSTQNLILIRPWL 146

Query: 140 DKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT-FRSGPDHDPRFTVVVEIS 196
           D ++++ A  ++    R + K  LQEW  A + V PEY+V       +   RF   V + 
Sbjct: 147 DPHFQELAEQIRLDPARLNYKAALQEWTQAGYKVLPEYRVVEVNQSQNAHERFLAQVWLH 206

Query: 197 GLAPAQGMDCSKRAAEQVAA 216
                QG   S +AAEQ AA
Sbjct: 207 EKILGQGKGRSIKAAEQEAA 226


>gi|12045228|ref|NP_073039.1| ribonuclease III [Mycoplasma genitalium G37]
 gi|1350804|sp|P47607|RNC_MYCGE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|3844954|gb|AAC71594.1| ribonuclease III [Mycoplasma genitalium G37]
 gi|166078923|gb|ABY79541.1| ribonuclease III [synthetic Mycoplasma genitalium JCVI-1.0]
          Length = 262

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 76/147 (51%), Gaps = 8/147 (5%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFN 61
           + +T  K +     N    EKA  H+S  + ++   ESY+RLEFLGD ++  +++  LF 
Sbjct: 17  KLATFLKNLDIFPNNWEFFEKAFIHASYINEHEDVSESYDRLEFLGDALIDFVVAKKLFE 76

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +    EG L+     +V  E  +++  EL L  F+++S+           +   DV+E+
Sbjct: 77  LYPKYNEGLLTRTKIEIVKGENLNRIGMELKLGDFVKLSNG-----AELTENTVGDVLEA 131

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL 148
           L+ A+Y D G++ A  FV+KY  +R  
Sbjct: 132 LVGAIYEDMGMKKATEFVEKYIFERTF 158


>gi|184200693|ref|YP_001854900.1| ribonuclease III [Kocuria rhizophila DC2201]
 gi|183580923|dbj|BAG29394.1| ribonuclease III [Kocuria rhizophila DC2201]
          Length = 234

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/209 (33%), Positives = 98/209 (46%), Gaps = 14/209 (6%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           L +R+G      +L   ALTH S +  H  +   ERLEFLGD +L L ++  +++ +   
Sbjct: 10  LLERLGVDLDTETL-RIALTHRSYAYEHPGEVHNERLEFLGDAVLQLAVTDEIYHRYPEW 68

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG L+    S+VSA   + VAR L L   IR+     +   S   SI AD  E++I A+
Sbjct: 69  DEGRLAKLRASVVSARALAGVARSLGLGPHIRLGKGEVRTHGSDKASILADTTEAVIGAV 128

Query: 127 YLDGGIEVAGTFVDKYW-----KQRALKSGKFRRDAKTELQEWAHAKFGV-TPEYKVTFR 180
           Y   G   A   V +         R L  G   RD KT + E   A+ G+ T  Y+V   
Sbjct: 129 YESLGPVPARDLVLRMMVPLLEDTRVLHEG---RDWKTHIVELV-AQHGLGTVRYEVEG- 183

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           +GPDH+  FT    + G     G   SK+
Sbjct: 184 TGPDHERHFTADAVVDGNVLGHGEGTSKK 212


>gi|159027736|emb|CAO89606.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 234

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 94/175 (53%), Gaps = 7/175 (4%)

Query: 22  LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
           LL+ ALTH S+S    ++YE+LEF+GD ++ L+ + +L   +  A  GE +   + +VS 
Sbjct: 31  LLDLALTHPSVSRD--KNYEQLEFVGDSVVRLVAAEVLLETYPEALVGEFAALRSMMVSD 88

Query: 82  ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV-AGTFVD 140
            T ++ A       ++ VSS    D    ++ + AD  E+++ ALYL     +   +++D
Sbjct: 89  RTLAEFADRYGFERYLLVSSSTSIDRAGRISRL-ADAFEAVLGALYLSTQTMILVRSWLD 147

Query: 141 KYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
           +  +++A  ++    R++ K  LQEW  AK+   P+Y V   +G D + RF   V
Sbjct: 148 EPLREKAAEIRRDPARQNYKDALQEWTQAKYKKLPQYLVKEINGLDQE-RFCAEV 201


>gi|75909289|ref|YP_323585.1| ribonuclease III [Anabaena variabilis ATCC 29413]
 gi|75703014|gb|ABA22690.1| RNAse III [Anabaena variabilis ATCC 29413]
          Length = 228

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 84/185 (45%), Gaps = 8/185 (4%)

Query: 17  FANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           F +  LL +ALTH S  +   E     ERLEFLGD IL  L    L+       E EL+ 
Sbjct: 7   FRDEKLLRRALTHRSYVNENPEEGEHNERLEFLGDAILNFLSGEYLYRSHPDRGEDELTR 66

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG--G 131
           R ++LV  +  ++ A E+ L   +R+     +D      ++ +   E++I A YLD    
Sbjct: 67  RRSALVDEKQLAKFAIEVGLDFRMRLGKGAIRDGGYQNPNLLSSTFEAVIGAYYLDNNSN 126

Query: 132 IEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR-SGPDHDPR 188
           IE     ++  ++    +    R   D+K   QEW     G TP   +T + SGP H P 
Sbjct: 127 IEAVRVIIEPLFESVPEQIVVVRSNVDSKNRFQEWVQRNIGPTPPKYLTKQISGPSHAPE 186

Query: 189 FTVVV 193
           F   V
Sbjct: 187 FQAKV 191


>gi|198275414|ref|ZP_03207945.1| hypothetical protein BACPLE_01577 [Bacteroides plebeius DSM 17135]
 gi|198271750|gb|EDY96020.1| hypothetical protein BACPLE_01577 [Bacteroides plebeius DSM 17135]
          Length = 339

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 112/225 (49%), Gaps = 14/225 (6%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNH 62
           Y    K +G+   N  + ++AL H S S   +    + ERLEFLGD IL  +++ +++  
Sbjct: 20  YLCFYKILGFYPRNIEIYQQALLHKSSSVKAKGRLLNNERLEFLGDAILDAVVADIVYKR 79

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F+  +EG L+   + +V  ET +Q+A ++ L   I+ ++  +    S+M     +  E+L
Sbjct: 80  FEGKREGFLTNTRSKIVQRETLNQIAVKIGLDKLIKYTT-RQSSHNSYMC---GNAFEAL 135

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHA-KFGVTPEYKVT 178
           + A+YLD G      F+++   +  L   K  R   + K++L EW    KF +  E+ + 
Sbjct: 136 VGAIYLDRGYATCKFFMEERIIKPYLNLEKLSRKEVNFKSKLIEWGQKNKFLI--EFNLL 193

Query: 179 FRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            ++     +P F   V +  +   QG   SK+ ++Q AA E L +
Sbjct: 194 EQTVDEQQNPVFETQVVVEQIPAGQGKGYSKKESQQEAAHETLNK 238


>gi|134045095|ref|YP_001096581.1| ribonuclease III [Methanococcus maripaludis C5]
 gi|132662720|gb|ABO34366.1| RNAse III [Methanococcus maripaludis C5]
          Length = 229

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 101/221 (45%), Gaps = 7/221 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
            +  L  ++   F + ++ ++A  HSS  +  +    E  ERLE+LGD +L L+I   LF
Sbjct: 3   NFEKLLSKLDIKFNDLNIFKRAFMHSSYVNEQKNTNLEDNERLEYLGDAVLELIIIEYLF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
              ++  EGE+S      V        A++L+  ++I +             +I +DV E
Sbjct: 63  KK-ENLSEGEMSKLRAKYVCESALFTYAKKLNFNNYILLGKGELNSKGYNKPAIISDVFE 121

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + IAA+YLD G++ A  FV         +S K    D KT LQE        T +Y    
Sbjct: 122 AFIAAIYLDQGLDSAKKFVYNNIIPIIEESSKELFIDHKTRLQELPELN-NKTIKYVKLE 180

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            +G  HD +F + V+       +G+  SK+ AE  AA   L
Sbjct: 181 EAGKPHDKKFVIAVKSGQKMLGKGIGKSKKEAEMKAAKNAL 221


>gi|84498322|ref|ZP_00997119.1| ribonuclease III [Janibacter sp. HTCC2649]
 gi|84381822|gb|EAP97705.1| ribonuclease III [Janibacter sp. HTCC2649]
          Length = 249

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 86/193 (44%), Gaps = 5/193 (2%)

Query: 21  SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           +LL +ALTH S ++        ERLEFLGD +LGL+++  L+       EG+L+    ++
Sbjct: 27  ALLGRALTHRSYAYEAGGIPHNERLEFLGDSVLGLVVTDSLYVTHPDLTEGQLAKLRAAV 86

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138
           V+    + V R L L  ++ +             SI AD VE++I A Y   G+  AG  
Sbjct: 87  VNMRALAAVGRTLGLGDYLHLGRGEESTGGRDKDSILADTVEAVIGATYCSAGLVAAGDL 146

Query: 139 VDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
           V          S       D KT LQE   A     P   V    GP+H   F+  V + 
Sbjct: 147 VHHLLDPLMASSATLGAGLDWKTSLQEIC-ALHSAGPVEYVLEEDGPEHSKTFSARVLVG 205

Query: 197 GLAPAQGMDCSKR 209
           G+    G+  +K+
Sbjct: 206 GVEHGSGVGRTKK 218


>gi|302344776|ref|YP_003813129.1| ribonuclease III [Prevotella melaninogenica ATCC 25845]
 gi|302149813|gb|ADK96075.1| ribonuclease III [Prevotella melaninogenica ATCC 25845]
          Length = 365

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 110/231 (47%), Gaps = 25/231 (10%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y +L + IG    + S  + AL H S++    +    + ERLEFLGD IL  ++  +++ 
Sbjct: 31  YLSLYQIIGIIPHDISYYKTALLHKSVARRNAKGKPVNNERLEFLGDAILDAIVGDIVYE 90

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF   +EG L+   + +V  +T +++A+E+ +   I  +        S  + +  +  E+
Sbjct: 91  HFPGKREGFLTNTRSKIVQRDTLNRLAKEMGIGQLILSNG----QTSSHNSYLGGNAFEA 146

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---------RRDAKTELQEWAHAKFGVT 172
           L+ ALYLD G         K+ KQ+ L  GK            + K++L EW+  K  V 
Sbjct: 147 LVGALYLDHGYNACM----KFMKQQVL--GKLINIDKVAYKEVNFKSKLIEWSQ-KNKVN 199

Query: 173 PEYK-VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            E+K +  +      P F   V + G+   +G   SK+ ++Q A+   L+R
Sbjct: 200 MEFKLIENQKDKQGSPTFHFQVIMEGIPCGEGHGYSKKESQQEASKLTLQR 250


>gi|126178317|ref|YP_001046282.1| ribonuclease III [Methanoculleus marisnigri JR1]
 gi|125861111|gb|ABN56300.1| RNAse III [Methanoculleus marisnigri JR1]
          Length = 258

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 102/215 (47%), Gaps = 28/215 (13%)

Query: 21  SLLEKALTHSSISHSYQ------ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
            L ++ALTH S ++  +      E  ERLEFLG+ +L  +I+  L+  +D    GE++ R
Sbjct: 55  PLYDRALTHRSYANHGEYPAETFEDNERLEFLGNYVLDFVIADHLYGEYD-LPPGEMNRR 113

Query: 75  FNSLVSAETCSQVARELDLASFIR-----VSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
                      QV R   LA  +R     +   +R+       SI AD  E+LI A+YLD
Sbjct: 114 L----------QVTRNTKLAEIVRRQGLGIDGAVRRRGQPPTDSIVADAFEALIGAIYLD 163

Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEW-AHAKFGVTPEYKVTF-RSGPDHDP 187
            G+ VA   V   +++  +      R+ +  LQE+ A    G   E +  F ++GP + P
Sbjct: 164 RGLGVARDVVLAIFEEE-IAECDTHRNYRGRLQEYVARENLG---ELEYAFLQTGPGNCP 219

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            +   V + G+   +G   +K+ A  +AA E L R
Sbjct: 220 VWAARVTVGGIPFGEGEARTKQGAAMIAAKEALAR 254


>gi|304382096|ref|ZP_07364607.1| ribonuclease 3 [Prevotella marshii DSM 16973]
 gi|304336694|gb|EFM02919.1| ribonuclease 3 [Prevotella marshii DSM 16973]
          Length = 359

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 111/222 (50%), Gaps = 13/222 (5%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           L + IG+     S  ++AL H S++    +    + ERLEFLGD IL  ++  +++ HF 
Sbjct: 23  LRRIIGFYPHEISYYQQALMHKSVARRNAKGKPVNNERLEFLGDAILDAIVGDIVYQHFP 82

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             +EG L+   + LV  ET +++A+E+ + + I +SS       S+M     +  E+L+ 
Sbjct: 83  GKREGFLTNTRSKLVQRETLNRLAKEMGINNLI-LSSGRTSSHNSYMG---GNAFEALVG 138

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYK-VTFR 180
           A+YLD G      F++     + +   K      + K++L EW+  K  +  +++ V  +
Sbjct: 139 AIYLDKGYNACMKFMNHRILGQIINLDKMAYKEVNFKSKLIEWSQ-KNRIRLDFELVEQK 197

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                +P FT  V +  +    G   SK+ ++Q A+ + LK+
Sbjct: 198 KDESGNPVFTCKVVLEDVEGCCGTGFSKKESQQTASEKTLKK 239


>gi|312375831|gb|EFR23111.1| hypothetical protein AND_13526 [Anopheles darlingi]
          Length = 1254

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 114/228 (50%), Gaps = 18/228 (7%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64
            +  E  IG  F++  LL +A T  S+  +     S +RLEFLGD +L L+ S  L+ HF 
Sbjct: 779  TRFEDSIGVKFSHIRLLARAFTDRSMGFTNLTLGSNQRLEFLGDTVLQLICSEYLYRHFP 838

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
               EG LS+  +SLV+  T + V  +L +  +  V S+ + ++    T  +AD++E+ + 
Sbjct: 839  EHHEGHLSLLRSSLVNNRTQAVVCDDLGMTQYA-VYSNPKAEL---KTKDRADLLEAFLG 894

Query: 125  ALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWA---HAKFGVTPE---YK 176
            ALY+D G+     F  V  + + +     +   D K++LQ+         G  P+   YK
Sbjct: 895  ALYVDKGLVYCEKFCQVCLFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPLYK 954

Query: 177  VTFRSGPDHDPRFTVVVEISG--LAPAQGMDCSKRAAEQVAAAEVLKR 222
            V   +GP +   ++V V   G  LA A G   S + AE  AA + L++
Sbjct: 955  VIECTGPTNTRVYSVAVYFRGKRLACANGH--SIQQAEMNAARQALEK 1000



 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 61/110 (55%), Gaps = 9/110 (8%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
           T S+I+H+     ERLEFLGD ++  + S  LF+ F   +EG L+    ++V  +  + +
Sbjct: 627 TDSNITHN-----ERLEFLGDAVVEFITSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVL 681

Query: 88  ARELDLASFIRVSSDLRKDVCSFMT--SIQADVVESLIAALYLDGGIEVA 135
           A++L L  F+  +     D+C  +      A+  E+L+ AL LDGGI VA
Sbjct: 682 AKKLHLEEFMLYAHG--SDLCHELELRHALANCFEALMGALLLDGGIAVA 729


>gi|288801829|ref|ZP_06407271.1| ribonuclease 3 (Ribonuclease III) (RNase III) [Prevotella
           melaninogenica D18]
 gi|288335871|gb|EFC74304.1| ribonuclease 3 (Ribonuclease III) (RNase III) [Prevotella
           melaninogenica D18]
          Length = 354

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 110/231 (47%), Gaps = 25/231 (10%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y +L + IG    + S  + AL H S++    +    + ERLEFLGD IL  ++  +++ 
Sbjct: 20  YLSLYQIIGIIPHDISYYKTALLHKSVARRNAKGKPINNERLEFLGDAILDAIVGDIVYE 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF   +EG L+   + +V  +T +++A+E+ +   I  +        S  + +  +  E+
Sbjct: 80  HFPGKREGFLTNTRSKIVQRDTLNRLAKEMGIGQLILSNG----QTSSHNSYLGGNAFEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---------RRDAKTELQEWAHAKFGVT 172
           L+ ALYLD G         K+ KQ+ L  GK            + K++L EW+  K  V 
Sbjct: 136 LVGALYLDHGYNACM----KFMKQQVL--GKLINIDKVAYKEVNFKSKLIEWSQ-KNKVN 188

Query: 173 PEYK-VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            E+K +  +      P F   V + G+   +G   SK+ ++Q A+   L+R
Sbjct: 189 MEFKLIENQKDKQGSPTFHFQVIMEGIPCGEGHGYSKKESQQEASKLTLQR 239


>gi|319952824|ref|YP_004164091.1| rnase iii [Cellulophaga algicola DSM 14237]
 gi|319421484|gb|ADV48593.1| RNAse III [Cellulophaga algicola DSM 14237]
          Length = 245

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 105/213 (49%), Gaps = 16/213 (7%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +G+     ++ +KA  H S +   ++    +YERLEFLGD +LG +IS  L+    +  E
Sbjct: 26  LGFKPKKLAVYKKAFLHRSANIRDEDGTPMNYERLEFLGDSMLGTIISKYLYTEVPTGDE 85

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G L+   + +VS E  +++ +EL+L  ++    + R     F  +I  +V E+L+ A+YL
Sbjct: 86  GYLTKMRSKIVSREHLNELGKELNLIHYV----ESRIPKSHFGDNIHGNVYEALVGAIYL 141

Query: 129 DGGIEVAGTFVDK-----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           D G +    F+ K     Y     L+ GK     K+ L EW   K   +  Y +   +G 
Sbjct: 142 DRGYKYCEKFIHKSVIVPYVDIEQLE-GKV-ISYKSLLIEWCQ-KQKKSFYYDIYEDTGN 198

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           D    F V + I+    ++    SK+ AE++A+
Sbjct: 199 DAVKHFAVKLHINKKIVSKARATSKKKAEEIAS 231


>gi|224476345|ref|YP_002633951.1| ribonuclease III [Staphylococcus carnosus subsp. carnosus TM300]
 gi|254807899|sp|B9DPJ2|RNC_STACT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|222420952|emb|CAL27766.1| putative ribonuclease III [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 242

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 96/206 (46%), Gaps = 15/206 (7%)

Query: 21  SLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
            L ++A +HSS  + +        ERLEFLGD +L L +S  LF+ +    EG L+    
Sbjct: 32  PLYQQAFSHSSFINDFNMDRLAHNERLEFLGDAVLELTVSRYLFDKYPELPEGNLTKMRA 91

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           ++V   +    A ++ L   I +     K       S+ +D  E+ + ALYLD G++   
Sbjct: 92  TIVCEPSLVIFANKIQLNELILLGKGEEKTGGRTRPSLVSDAFEAFVGALYLDQGLDAVW 151

Query: 137 TFVDK----YWKQRALKSGKFRRDAKTELQEWAH--AKFGVTPEYKVTFRSGPDHDPRFT 190
            F ++    + +   L       D KT+ QE  H  +K  VT  Y++    GP H   FT
Sbjct: 152 QFSEEVIFPHVEDDELMG---VVDFKTQFQELIHRLSKGNVT--YRLIDEQGPAHHRLFT 206

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAA 216
             V + G   A+G   +K+ +EQ AA
Sbjct: 207 SEVLLEGEPVAKGQGRTKKESEQKAA 232


>gi|170594121|ref|XP_001901812.1| RNase3 domain containing protein [Brugia malayi]
 gi|158590756|gb|EDP29371.1| RNase3 domain containing protein [Brugia malayi]
          Length = 1329

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 104/230 (45%), Gaps = 12/230 (5%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66
            LEK IG  F +  +L KA T  +I  +       +RLEFLGD +L L+ +  L+ HF   
Sbjct: 1020 LEKNIGITFKHIRVLAKAFTRRNIGFNNLTLGHNQRLEFLGDTVLQLITTDYLYKHFPYH 1079

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM-TSIQADVVESLIAA 125
             EG LS+    LVS  T S +  ++ +  ++     ++K     +    +AD+VE+ + A
Sbjct: 1080 HEGHLSILRTCLVSNRTQSVICDDIGMTKYLVTPKVMQKSGMPVLRVKDKADLVEAFLGA 1139

Query: 126  LYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV------TPEYKV 177
            LY+D G +    F  +  + + +     +   D K++LQ+       +       PEY+ 
Sbjct: 1140 LYVDRGFDYCKVFCRICFFPRLKFFIIAQHWNDPKSQLQQCCLTLRQMDGGEPDIPEYRT 1199

Query: 178  TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL-KREGIW 226
                GP +   + V V       A G   + + A+  AA   L KR  ++
Sbjct: 1200 IAVEGPTNTRIYKVAVYFRKKRLAVGCGHTMQLAQMRAAENALIKRSDLF 1249



 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 60/111 (54%), Gaps = 9/111 (8%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
           K    S ++H+     ERLEFLGD ++  + +  LF  F    EG L+   +++V  +  
Sbjct: 864 KKAEQSPLNHN-----ERLEFLGDAVIEFITTIHLFYMFSELDEGGLATYRSTMVQNKNL 918

Query: 85  SQVARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIE 133
           + +A+++ L  F+  +     D+C  S +    A+  E+++AA+YLD GI+
Sbjct: 919 ALLAKKIGLDEFMLYAHG--PDLCHESDLRHAMANAFEAMMAAIYLDAGID 967


>gi|254233016|ref|ZP_04926343.1| ribonuclease III rnc (RNase III) [Mycobacterium tuberculosis C]
 gi|124602075|gb|EAY61085.1| ribonuclease III rnc (RNase III) [Mycobacterium tuberculosis C]
          Length = 198

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 80/158 (50%), Gaps = 6/158 (3%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRV 99
           +EFLGD +LGL I+  LF+      EG+L+    S+V+ +  + VAR L    L   + +
Sbjct: 1   MEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLL 60

Query: 100 SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDA 157
                    +  +SI AD +ESL+ A+YL  G+E A   + + +     A  +     D 
Sbjct: 61  GRGEANTGGADKSSILADGMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDW 120

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
           KT LQE   A+    P Y VT  +GPDHD  FT VV +
Sbjct: 121 KTSLQELTAARGLGAPSYLVT-STGPDHDKEFTAVVVV 157


>gi|33241211|ref|NP_876153.1| dsRNA-specific ribonuclease/ribonuclease III [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
 gi|5738536|emb|CAB52818.1| ribonuclease III [Prochlorococcus marinus]
 gi|33238741|gb|AAQ00806.1| dsRNA-specific ribonuclease/ribonuclease III [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
          Length = 249

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 7/205 (3%)

Query: 22  LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
           +L +ALTH+S + S   ++ERLEF GD +L L  S  + +HF     G+ S     LVS 
Sbjct: 45  ILNEALTHTSFNLSI--NHERLEFQGDAVLRLAASEYIQSHFPKLSVGDRSALRAQLVSD 102

Query: 82  ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY-LDGGIEVAGTFVD 140
              ++V  ++ + + + +++   KD  +  T I A+  E+LI ALY     I+    +++
Sbjct: 103 RWLAKVGYKIGIKTTMLIANKALKDEAATDT-ICAEGTEALIGALYECLRNIDAIQNWLE 161

Query: 141 KYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISG 197
            YW  +   + +   +++ K+ LQEW+  +    P Y +   S    D  RF   V I  
Sbjct: 162 PYWNIESEEVLADPHKQNEKSALQEWSQGQGLNKPIYTIKEISKQHGDLKRFYCTVHIQN 221

Query: 198 LAPAQGMDCSKRAAEQVAAAEVLKR 222
               +G   S++ A++ AA E LK+
Sbjct: 222 DFRGEGWGSSRKKAQKEAAKEALKK 246


>gi|195455348|ref|XP_002074681.1| GK23200 [Drosophila willistoni]
 gi|194170766|gb|EDW85667.1| GK23200 [Drosophila willistoni]
          Length = 1320

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 108/225 (48%), Gaps = 14/225 (6%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +  E  +G  F +  LL +A T  SI  +H    S +RLEFLGD +L L+ S  L+ HF 
Sbjct: 962  TKFEDSVGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRHFP 1021

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
               EG LS+  +SLV+  T + V  +L +  +  V ++ + D+    T  +AD++E+ + 
Sbjct: 1022 EHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYA-VYANPKADL---KTKDRADLLEAFLG 1077

Query: 125  ALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWA---HAKFGVTPE---YK 176
            +LY+D G+     F  V  + + +     +   D K++LQ+         G  P+   YK
Sbjct: 1078 SLYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPYYK 1137

Query: 177  VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V   SGP +   + V V       A     S + AE  AA + L+
Sbjct: 1138 VVEASGPTNTRVYKVAVYFRSKRLATSSGSSIQQAEMNAAKQALE 1182



 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 10/121 (8%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
           T S+I+H+     ERLEFLGD ++  L S  LF  F   +EG L+    ++V  +  + +
Sbjct: 811 TVSNITHN-----ERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALL 865

Query: 88  ARELDLASFIRVSSDLRKDVCSFMT--SIQADVVESLIAALYLDGGIEVAG-TFVDKYWK 144
           A++L L  F+  +     D+C  +      A+  E+L+ AL LDGGI+VA   F D  ++
Sbjct: 866 AKKLQLEEFMLYAHG--SDLCHELELRHAMANCFEALMGALLLDGGIKVADEVFTDALFR 923

Query: 145 Q 145
           Q
Sbjct: 924 Q 924


>gi|225447097|ref|XP_002270948.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 236

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 85/167 (50%), Gaps = 25/167 (14%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +E+ +GY+F N+ LLE+A TH+S   + Q SYERLEF+GD +L LLI+   F  +   + 
Sbjct: 33  VEQILGYSFTNKRLLEEAYTHASCQKN-QFSYERLEFMGDSVLSLLITKEQFFLYPDLQP 91

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ------------ 115
           G L+   ++ V  E  ++VA +  L  F+R     + + +  F  +I+            
Sbjct: 92  GRLTRLRSANVDKEKLARVALKHGLHRFLRHKKPKIEQQIYEFAEAIKEYPLHSNGQIEV 151

Query: 116 ----ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRD 156
               ADVVES I A+++D         VD  WK      G++  R+D
Sbjct: 152 PKVLADVVESTIGAVFVD-----CNCSVDTVWKDYFAGRGEYPLRKD 193


>gi|315604391|ref|ZP_07879457.1| ribonuclease III [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315314097|gb|EFU62148.1| ribonuclease III [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 241

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 99/209 (47%), Gaps = 9/209 (4%)

Query: 21  SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           +LL+ AL H S ++      + ERLEFLGD +L ++I+  L+  +    E +LS    + 
Sbjct: 29  TLLQLALVHRSYANEAGGIANNERLEFLGDSVLSIVIAQKLYEQYPDVAESDLSRMRAAT 88

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138
           VS +  +  AR + L  F+ +             SI +D  E+LI A YL  G+E A   
Sbjct: 89  VSQQPLAAAARRIGLGDFVFLGKGESTHGGRDKDSILSDTFEALIGATYLTSGLEEARRV 148

Query: 139 VDK---YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VVV 193
           +     +    A   G+  +D KT L E++ +K      Y+V    GPDH   FT    V
Sbjct: 149 ILARLGFLLADAPSRGQH-QDWKTLLVEYSQSKGLGEVSYEVEG-EGPDHQRVFTARAYV 206

Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             S  A  +G   SK+ AE  AA + +KR
Sbjct: 207 SESSEALGEGRASSKKHAENAAAQDAMKR 235


>gi|260910581|ref|ZP_05917245.1| ribonuclease 3 [Prevotella sp. oral taxon 472 str. F0295]
 gi|260635280|gb|EEX53306.1| ribonuclease 3 [Prevotella sp. oral taxon 472 str. F0295]
          Length = 473

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 116/226 (51%), Gaps = 15/226 (6%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61
           YS+L + +G+   N    + AL H S+    ++    + ERLEFLGD IL  ++  +++ 
Sbjct: 20  YSSLFEILGFYPRNIGYYKLALMHKSVMRRGANGKPVNNERLEFLGDAILDAIVGDIVYR 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF   +EG L+   + LV  ET +++A+E+ ++  I +SS       S+M     +  E+
Sbjct: 80  HFPGKREGFLTNTRSKLVQRETLNRLAQEMGISRLI-LSSGHSSSHNSYMG---GNAFEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178
           L+ A+YLD G      F++K    + +   K      + K++L EW+  K  V  ++ + 
Sbjct: 136 LVGAIYLDRGYASCMRFMEKRILTKMINIDKVAYKEVNFKSKLIEWSQ-KNRVKLDF-IV 193

Query: 179 FRSGPDHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              G D +  P F   VE+ G+   +G   SK+ ++Q+A+   L+R
Sbjct: 194 KEQGKDKNGSPFFLFCVELEGIEGCKGRGYSKKESQQLASKLTLER 239


>gi|195151442|ref|XP_002016656.1| GL11697 [Drosophila persimilis]
 gi|194110503|gb|EDW32546.1| GL11697 [Drosophila persimilis]
          Length = 1262

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 108/225 (48%), Gaps = 14/225 (6%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +  E  IG  F +  LL +A T  SI  +H    S +RLEFLGD +L L+ S  L+ HF 
Sbjct: 941  TKFEDSIGLKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLISSEYLYRHFP 1000

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
               EG LS+  +SLV+  T + V  +L +  +  V ++ + D+    T  +AD++E+ + 
Sbjct: 1001 EHHEGHLSLLRSSLVNNRTQAVVCDDLGMTKYA-VYANPKADL---KTKDRADLLEAFLG 1056

Query: 125  ALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWA---HAKFGVTPE---YK 176
            +LY+D G+     F  V  + + +     +   D K++LQ+         G  P+   YK
Sbjct: 1057 SLYVDKGLLFCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPYYK 1116

Query: 177  VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V   SGP +   + V V       A     S + AE  AA + L+
Sbjct: 1117 VVEASGPTNTRVYKVAVYFRSKRLATSSGASIQQAEMNAAKQALE 1161



 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 61/110 (55%), Gaps = 9/110 (8%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
           T S+I+H+     ERLEFLGD ++  L S  LF  F   +EG L+    ++V  +  + +
Sbjct: 790 TVSNITHN-----ERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALL 844

Query: 88  ARELDLASFIRVSSDLRKDVCSFMT--SIQADVVESLIAALYLDGGIEVA 135
           A++L L  F+  +     D+C  +      A+  E+L+ AL LDGGI+VA
Sbjct: 845 AKKLQLEEFMLYAHG--SDLCHELELRHAMANCFEALMGALLLDGGIKVA 892


>gi|157285009|gb|ABV31244.1| dicer-like 1 [Physcomitrella patens]
          Length = 1662

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 109/249 (43%), Gaps = 40/249 (16%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            M ++ + +LE  IG+ F  RSLL +A+TH+S   S    Y+RLEF+GD +L  LI+  LF
Sbjct: 1316 MLSIDFDSLEASIGHKFRKRSLLVEAITHASRPSSGVPGYQRLEFVGDAVLDYLITRFLF 1375

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ---- 115
              +     G L+    + V+ E  ++VA +      +R  SS L   + +F+  IQ    
Sbjct: 1376 FKYTDLPPGRLTDLRAAAVNNENFARVAVKHSFHLHLRHGSSALETQIRNFVNDIQTELD 1435

Query: 116  ------------------ADVVESLIAALYLDGGIEVAGTFVDKYWK------QRALKSG 151
                               D++ES+  AL+LD  +E      D  WK      Q  +   
Sbjct: 1436 KPGVNSFGLGDFKAPKVLGDILESIAGALFLDACLE-----TDHVWKVFEPLLQPMVTPE 1490

Query: 152  KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
                    ELQE    +     EYK + R+G       TV V + G+      +  K+ A
Sbjct: 1491 TLPMHPVRELQERCQQQAEAL-EYKAS-RAG----NVATVEVYVDGVQIGSAQNAQKKMA 1544

Query: 212  EQVAAAEVL 220
            +++AA   L
Sbjct: 1545 QKLAARNAL 1553



 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            L+ +I Y  A   +LE ALT +S   ++  SYER E LGD  L  ++S  LF  +    E
Sbjct: 1096 LKHQIDYPIAASKVLE-ALTAASCQETF--SYERAELLGDAYLKWVVSRRLFLKYPCKHE 1152

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIR 98
            G+L+     +VS     Q A +  L S+I+
Sbjct: 1153 GQLTRMRQQIVSNSVLYQYALDKGLQSYIQ 1182


>gi|324501501|gb|ADY40667.1| Ribonuclease 3 DROSHA [Ascaris suum]
          Length = 1304

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 103/225 (45%), Gaps = 11/225 (4%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64
            +  EK IG  F +  +L KA T  ++  +       +RLEFLGD +L L+ +  L+ HF 
Sbjct: 1000 TEFEKSIGVTFKHIRVLAKAFTRRNVGFNNLTLGHNQRLEFLGDTVLQLITTDYLYKHFP 1059

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM-TSIQADVVESLI 123
               EG LS+    LVS +T S +  ++ +  ++ +   ++K+    +    +AD+VES +
Sbjct: 1060 MHHEGHLSILRTCLVSNKTQSVICDDVGMTKYLVMPKAMQKNGAPVLRVKDKADLVESFL 1119

Query: 124  AALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV------TPEY 175
             ALY+D G+     F  V  + + +     +   D K++LQ+       V       PEY
Sbjct: 1120 GALYVDRGLGYCKVFCRVCFFPRLKFFIVSQRWNDPKSQLQQCCLTLRQVDGGEPDIPEY 1179

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            +     GP +   + V V       A G   + + A+  AA   L
Sbjct: 1180 RTIAVEGPTNTRVYKVAVYFRKKRLAVGSGHTMQIAQMHAAENAL 1224



 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 61/111 (54%), Gaps = 9/111 (8%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
           K +  S ++H+     ERLEFLGD ++  + +  LF  F    EG L+   +++V  +  
Sbjct: 846 KKVEQSPLNHN-----ERLEFLGDAVIEFITTIHLFFMFTELDEGGLATYRSTMVQNKNL 900

Query: 85  SQVARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIE 133
           + +A+++ L  F+  +     D+C  S +    A+  E+++AA+YLD GI+
Sbjct: 901 AVLAKKIGLDEFMLYAHG--PDLCHESDLRHAMANAFEAMMAAIYLDAGID 949


>gi|256379958|ref|YP_003103618.1| ribonuclease III [Actinosynnema mirum DSM 43827]
 gi|255924261|gb|ACU39772.1| ribonuclease III [Actinosynnema mirum DSM 43827]
          Length = 267

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 65/186 (34%), Positives = 90/186 (48%), Gaps = 14/186 (7%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL  ALTH S ++        ERLEFLGD +LGL+++  L+       EG+L+    S+V
Sbjct: 28  LLTLALTHRSYAYENGGLPPNERLEFLGDAVLGLVVTDHLYRAHPDRPEGQLAKLRASVV 87

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSF---MTSIQADVVESLIAALYLDGGIEVAG 136
           +    + VAR L            R +  +      SI AD +E++I A+YL  GI+ A 
Sbjct: 88  NMHALAGVARGLGADGLGGHLLLGRGEELTGGRDKASILADGLEAVIGAVYLQFGIDTAR 147

Query: 137 TFV----DKYWKQRALKSGKFRRDAKTELQEW-AHAKFGVTPEYKVTFRSGPDHDPRFTV 191
             V    D    +  L+      D KT LQE  A +  GV PEY+V  + GPDH   FT 
Sbjct: 148 QLVHHLFDPLLAEAPLRGAGL--DWKTSLQELTASSGLGV-PEYRVDDQ-GPDHRKEFTA 203

Query: 192 VVEISG 197
            V + G
Sbjct: 204 TVYVGG 209


>gi|126642554|ref|YP_001085538.1| ribonuclease III [Acinetobacter baumannii ATCC 17978]
          Length = 176

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 85/172 (49%), Gaps = 3/172 (1%)

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
           ++I+  L++ +    EG L+    +LV  E   ++A +L L+  + +S+   K       
Sbjct: 1   MIIANYLYHAYPHENEGRLTRMRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRE 60

Query: 113 SIQADVVESLIAALYLDGG-IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKF 169
           SI AD VE++I A+YLD   + +    V K++      ++     +D K+ LQE+  A+ 
Sbjct: 61  SILADTVEAIIGAIYLDSSDLNLLKDIVLKWYTPYLDHIEPTDQLKDPKSRLQEYLQARK 120

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              P Y+V    G      F V   + GL+   G   S+R AEQ AAAE+LK
Sbjct: 121 KPLPVYEVVDIQGDAPHQHFKVECLVDGLSKIHGEGSSRRFAEQAAAAEILK 172


>gi|312069951|ref|XP_003137921.1| RNase3 domain-containing protein [Loa loa]
 gi|307766916|gb|EFO26150.1| RNase3 domain-containing protein [Loa loa]
          Length = 1297

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 104/230 (45%), Gaps = 12/230 (5%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66
            LEK IG  F +  +L KA T  +I  +       +RLEFLGD +L L+ +  L+ HF   
Sbjct: 990  LEKSIGVTFKHIRVLAKAFTRRNIGFNNLTLGHNQRLEFLGDTVLQLITTDYLYKHFPYH 1049

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM-TSIQADVVESLIAA 125
             EG LS+    LVS  T S +  ++ +  ++     ++K     +    +AD+VE+ + A
Sbjct: 1050 HEGHLSILRTCLVSNRTQSVICDDIGMTKYLVTPKVMQKSGLPILRVKDKADLVEAFLGA 1109

Query: 126  LYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV------TPEYKV 177
            LY+D G +    F  +  + + +     +   D K++LQ+       +       PEY+ 
Sbjct: 1110 LYVDRGFDYCKVFCRICFFPRLKFFIIAQHWNDPKSQLQQCCLTLRQMDGGEPDIPEYRT 1169

Query: 178  TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL-KREGIW 226
                GP +   + V V       A G   + + A+  AA   L KR  ++
Sbjct: 1170 IAVEGPTNTRIYKVAVYFRKKRLAVGCGHTMQLAQMRAAENALIKRSDLF 1219



 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 60/111 (54%), Gaps = 9/111 (8%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
           K    S ++H+     ERLEFLGD ++  + +  LF  F    EG L+   +++V  +  
Sbjct: 834 KKAEQSPLNHN-----ERLEFLGDAVIEFITTIHLFYMFSELDEGGLATYRSTMVQNKNL 888

Query: 85  SQVARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIE 133
           + +A+++ L  F+  +     D+C  S +    A+  E+++AA+YLD GI+
Sbjct: 889 AVLAKKIGLDEFMLYAHG--PDLCHESDLRHAMANAFEAMMAAIYLDAGID 937


>gi|168010516|ref|XP_001757950.1| dsRNA-specific nuclease dicer and related ribonuclease
            [Physcomitrella patens subsp. patens]
 gi|162690827|gb|EDQ77192.1| dsRNA-specific nuclease dicer and related ribonuclease
            [Physcomitrella patens subsp. patens]
          Length = 1662

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 109/249 (43%), Gaps = 40/249 (16%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            M ++ + +LE  IG+ F  RSLL +A+TH+S   S    Y+RLEF+GD +L  LI+  LF
Sbjct: 1316 MLSIDFDSLEASIGHKFRKRSLLVEAITHASRPSSGVPCYQRLEFVGDAVLDYLITRFLF 1375

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ---- 115
              +     G L+    + V+ E  ++VA +      +R  SS L   + +F+  IQ    
Sbjct: 1376 FKYTDLPPGRLTDLRAAAVNNENFARVAVKHSFHLHLRHGSSALETQIRNFVNDIQTELD 1435

Query: 116  ------------------ADVVESLIAALYLDGGIEVAGTFVDKYWK------QRALKSG 151
                               D++ES+  AL+LD  +E      D  WK      Q  +   
Sbjct: 1436 KPGVNSFGLGDFKAPKVLGDILESIAGALFLDACLE-----TDHVWKVFEPLLQPMVTPE 1490

Query: 152  KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
                    ELQE    +     EYK + R+G       TV V + G+      +  K+ A
Sbjct: 1491 TLPMHPVRELQERCQQQAEAL-EYKAS-RAG----NVATVEVYVDGVQIGSAQNAQKKMA 1544

Query: 212  EQVAAAEVL 220
            +++AA   L
Sbjct: 1545 QKLAARNAL 1553



 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            L+ +I Y  A   +LE ALT +S   ++  SYER E LGD  L  ++S  LF  +    E
Sbjct: 1096 LKHQIDYPIAASKVLE-ALTAASCQETF--SYERAELLGDAYLKWVVSRRLFLKYPCKHE 1152

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIR 98
            G+L+     +VS     Q A +  L S+I+
Sbjct: 1153 GQLTRMRQQIVSNSVLYQYALDKGLQSYIQ 1182


>gi|297739192|emb|CBI28843.3| unnamed protein product [Vitis vinifera]
          Length = 287

 Score = 72.0 bits (175), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 79/153 (51%), Gaps = 23/153 (15%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +E+ +GY+F N+ LLE+A TH+S   + Q SYERLEF+GD +L LLI+   F  +   + 
Sbjct: 33  VEQILGYSFTNKRLLEEAYTHASCQKN-QFSYERLEFMGDSVLSLLITKEQFFLYPDLQP 91

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ------------ 115
           G L+   ++ V  E  ++VA +  L  F+R     + + +  F  +I+            
Sbjct: 92  GRLTRLRSANVDKEKLARVALKHGLHRFLRHKKPKIEQQIYEFAEAIKEYPLHSNGQIEV 151

Query: 116 ----ADVVESLIAALYLDGGIEVAGTFVDKYWK 144
               ADVVES I A+++D         VD  WK
Sbjct: 152 PKVLADVVESTIGAVFVD-----CNCSVDTVWK 179


>gi|47459246|ref|YP_016108.1| ribonuclease III [Mycoplasma mobile 163K]
 gi|81614213|sp|Q6KHN3|RNC_MYCMO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|47458575|gb|AAT27897.1| ribonuclease III [Mycoplasma mobile 163K]
          Length = 246

 Score = 72.0 bits (175), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 97/210 (46%), Gaps = 25/210 (11%)

Query: 25  KALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           +ALTH + +  H+  ESY+ LEF+GD IL +  S  +F HF +  EGE S+    + +  
Sbjct: 29  QALTHKTYANEHANIESYDILEFIGDAILQMKSSIFIFQHFQNITEGEASL----IRAKN 84

Query: 83  TCSQVARE-------LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
            CS    E         L    + S  LR++V      I AD+ ES +AA+YLD G E  
Sbjct: 85  VCSSGLSELSKKLGLSKLLLISKGSEHLRENV-----KINADLFESFVAAIYLDLGDEKL 139

Query: 136 GTFVDK----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
             F+ +    Y     L+S K   D K+  QE+  +      EYK+T          F  
Sbjct: 140 EEFLKEIFYPYISTTNLESIK---DPKSSFQEYIQSYSNEIIEYKITQLENELRSELFKA 196

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            +  +G+    G   +K+ AE+ AA   L+
Sbjct: 197 ELMHNGITYGVGFGKTKKVAEEEAATRALE 226


>gi|298207213|ref|YP_003715392.1| putative ribonuclease III [Croceibacter atlanticus HTCC2559]
 gi|83849849|gb|EAP87717.1| putative ribonuclease III [Croceibacter atlanticus HTCC2559]
          Length = 247

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 76/138 (55%), Gaps = 8/138 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLLFN 61
           +S ++  +G+   N    +KA TH S++        ++YERLEFLGD +L  +I+  LF+
Sbjct: 19  FSAIQNLVGFKPTNLKPYKKAFTHRSLNEVDELGNAQNYERLEFLGDAMLSAIIAAHLFS 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
                 EG L+     +VS +  +++ ++LDL S ++  +++ K    F  +I  ++ E+
Sbjct: 79  AVPGGNEGYLTKMRAKVVSRKHLNELGKDLDLVSLVK--TNIPK--TQFGANIHGNLFEA 134

Query: 122 LIAALYLDGGIEVAGTFV 139
           LI A+YLD G +    F+
Sbjct: 135 LIGAIYLDKGYKSCKRFI 152


>gi|282901412|ref|ZP_06309337.1| Ribonuclease III [Cylindrospermopsis raciborskii CS-505]
 gi|281193691|gb|EFA68663.1| Ribonuclease III [Cylindrospermopsis raciborskii CS-505]
          Length = 238

 Score = 71.6 bits (174), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 105/200 (52%), Gaps = 7/200 (3%)

Query: 21  SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
            LL+ ALTH ++S S   +YE+LEF+GD ++ L+ + +L+  +     G+ +   + LVS
Sbjct: 30  PLLDLALTHPTVSES--ANYEQLEFVGDAVVRLVAAVVLWESYPDCCVGDFAAIRSVLVS 87

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG-GIEVAGTFV 139
               +++ARE  L  ++ V+     D     + + AD  E+L+ ALYL    + +   ++
Sbjct: 88  DRILARLAREYGLELYLLVAGSATADNVGQESRL-ADAFEALLGALYLSTQNLILIRPWL 146

Query: 140 DKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEIS 196
           D ++++ A  ++    + + K  LQEW  A + V PEY+V   + P +   RF   V + 
Sbjct: 147 DPHFQELAEQIRLDPAKLNYKAALQEWTQAGYKVLPEYRVVEVNQPQNPHERFLAQVWLH 206

Query: 197 GLAPAQGMDCSKRAAEQVAA 216
                QG   S +AAEQ AA
Sbjct: 207 EKILGQGKGRSIKAAEQEAA 226


>gi|269115244|ref|YP_003303007.1| dsRNA-specific ribonuclease III [Mycoplasma hominis]
 gi|268322869|emb|CAX37604.1| dsRNA-specific ribonuclease III [Mycoplasma hominis ATCC 23114]
          Length = 231

 Score = 71.2 bits (173), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 100/209 (47%), Gaps = 15/209 (7%)

Query: 20  RSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
           R     A THSS S+ ++  ESY+ LEFLGD +LG ++S  +F+++ +  EG+ +   + 
Sbjct: 28  RRYFCNAFTHSSYSNEHKNLESYQYLEFLGDSVLGFVVSDFIFDNYKNFGEGKATKLKSE 87

Query: 78  LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI----E 133
           +V       +++     + +R       +     +   +D++ES I A Y   G+    E
Sbjct: 88  IVDKNALGFLSKYYGFPNCLRTGKSAFANGKGIKSD--SDLIESFIGACYKACGLKFTKE 145

Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
           +   F+DK  K+            KT+LQE   + +G  P Y+        ++ +F   V
Sbjct: 146 IIYHFIDKILKKF---HNSINEHPKTKLQELVQSNWGCRPRYE----DQALNNGKFESKV 198

Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            I+     +G+  SK+ ++  AA++ LK+
Sbjct: 199 FINNNLYGEGIGQSKKESQTKAASDALKK 227


>gi|241895655|ref|ZP_04782951.1| dsRNA-specific ribonuclease [Weissella paramesenteroides ATCC
           33313]
 gi|241871022|gb|EER74773.1| dsRNA-specific ribonuclease [Weissella paramesenteroides ATCC
           33313]
          Length = 232

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 104/207 (50%), Gaps = 8/207 (3%)

Query: 17  FANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           F +  LLE+ALT ++  + +       Y+RLEFLGD ++    +  LF  F +  EG L+
Sbjct: 17  FNDLKLLEEALTQANYINEHPGYKGGDYQRLEFLGDAVMQQSTAVYLFKRFPNWDEGRLT 76

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
               S+V     + ++REL L  ++++             S+  D+ E+ I AL+LD G 
Sbjct: 77  ELRISMVQTRAFAALSRELHLDRYVQLGRGEELSGARNRDSLLEDLWEAFIGALFLDQGQ 136

Query: 133 EVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEY-KVTFRSGPDHDPRF 189
           EV   F+++    + +  G + +  D K++LQE+      V   Y K+  ++  +++  F
Sbjct: 137 EVVMNFLEEMMFVK-IDEGFYDQFVDYKSKLQEYLQRHGTVKIAYTKLDEQAISNNEQVF 195

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAA 216
           T+ V + G   A G   S + AE++AA
Sbjct: 196 TIQVSVDGKPLATGEGKSTKDAEKMAA 222


>gi|294787403|ref|ZP_06752656.1| ribonuclease III [Parascardovia denticolens F0305]
 gi|315227028|ref|ZP_07868815.1| ribonuclease III [Parascardovia denticolens DSM 10105]
 gi|294484759|gb|EFG32394.1| ribonuclease III [Parascardovia denticolens F0305]
 gi|315119478|gb|EFT82611.1| ribonuclease III [Parascardovia denticolens DSM 10105]
          Length = 290

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 71/117 (60%), Gaps = 3/117 (2%)

Query: 22  LLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL +ALTH S +  H    +YERLEFLGD +L L+ +  L+    +  EG++S   + +V
Sbjct: 33  LLIEALTHRSFANEHPGTRNYERLEFLGDAVLELVATETLYKAHPNYTEGQMSKIRSKVV 92

Query: 80  SAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
           S E+ +++AR+ L ++  I +    R+D  +   SI  D+VESL  A++++ GIE A
Sbjct: 93  SEESLAEIARDKLKISPMILLGIGERRDGGADKDSILCDIVESLFGAIFVEYGIETA 149


>gi|255534075|ref|YP_003094447.1| ribonuclease III [Pedobacter heparinus DSM 2366]
 gi|255347059|gb|ACU06385.1| ribonuclease III [Pedobacter heparinus DSM 2366]
          Length = 242

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 104/217 (47%), Gaps = 13/217 (5%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           L+  +G+   N +L + A  H S++    +  + S ERLEFLGD +LG +I+ LLF  + 
Sbjct: 21  LKNILGFVPGNATLYKMAFRHRSVAKILKNGSRSSNERLEFLGDAVLGSVIAELLFKSYP 80

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             +EG L+   + +V+    +Q+AR++     I V      +V +   S+  D  E+LI 
Sbjct: 81  YKEEGFLTEMRSKIVNRANLNQLARKMGFDQLI-VFDQKAVNVQTKHHSMLGDAFEALIG 139

Query: 125 ALYLDGGIEVAGTF-----VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           A+YLD G      F     V  Y     L+  +   + K++L EW   + G    + +  
Sbjct: 140 AVYLDKGYNFTREFLLKRIVKPYIDIHTLELTE--TNFKSKLIEWCQ-RHGKDITFDMME 196

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
               +    FT+   + G +   G D +K+ AE++AA
Sbjct: 197 NEEGESAKLFTIQAVVEGESYGIGRDYNKKNAEKLAA 233


>gi|194246455|ref|YP_002004094.1| DsRNA-specific ribonuclease [Candidatus Phytoplasma mali]
 gi|259491959|sp|B3R075|RNC_PHYMT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|193806812|emb|CAP18239.1| DsRNA-specific ribonuclease [Candidatus Phytoplasma mali]
          Length = 225

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 99/203 (48%), Gaps = 7/203 (3%)

Query: 21  SLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
           SL + ++THSS ++  +   +  ERLEFLGD ++ LL++  L+   +   EG +S +   
Sbjct: 17  SLYKMSITHSSYANENKLKKKDNERLEFLGDAVINLLMADYLYTKKEKENEGFMSKKRAQ 76

Query: 78  LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137
            V  ++    A+ + L ++I +    +    +   SI A+  E+L  A+YLD G  +A  
Sbjct: 77  SVCEDSLVIYAKSIQLQNYILLGKGEKNK--NINNSILANAFEALFGAIYLDLGYYIAKK 134

Query: 138 FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197
                   R L +     D KT+LQE   ++   T  Y +T   G DH   FT  V +  
Sbjct: 135 VFILIVIPR-LSNIIDNIDFKTQLQELVQSQ-KKTISYYITEEKGLDHSKEFTAEVFLEK 192

Query: 198 LAPAQGMDCSKRAAEQVAAAEVL 220
               +G   +K++AEQ AA  VL
Sbjct: 193 KNVGRGFGKTKKSAEQDAARYVL 215


>gi|296111745|ref|YP_003622127.1| dsRNA-specific ribonuclease RNaseIII [Leuconostoc kimchii IMSNU
           11154]
 gi|295833277|gb|ADG41158.1| dsRNA-specific ribonuclease RNaseIII [Leuconostoc kimchii IMSNU
           11154]
          Length = 233

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 99/212 (46%), Gaps = 8/212 (3%)

Query: 17  FANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           F N  LL +ALT  +  + + +     Y+RLEFLGD ++ + ++  LF  + S  EG+L+
Sbjct: 18  FHNEELLREALTQRNYLNEHPDEPGRDYQRLEFLGDSVMQVSVAEYLFKRYPSWHEGQLT 77

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
               ++V   + +  +R   L   IR+             S+  D+ E+ I ALYLD G 
Sbjct: 78  EMRIAMVQTRSFAHFSRVAHLNEGIRLGKGEEMSGARDRDSLLEDIWEAFIGALYLDQGS 137

Query: 133 EVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV-TFRSGPDHDPRF 189
           E   TF+D+     A+ +  F R  D K+ LQE       V   Y+  + +    ++  F
Sbjct: 138 EAVRTFLDQTLFA-AIDTDFFDRFIDFKSRLQEKLQKNGAVDIAYRTESEKQMIGNEQLF 196

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              V +     A+G   S + AE+VAA   LK
Sbjct: 197 EASVSVDNRELARGTGKSIKDAEKVAARAALK 228


>gi|300172910|ref|YP_003772075.1| ribonuclease III [Leuconostoc gasicomitatum LMG 18811]
 gi|299887288|emb|CBL91256.1| Ribonuclease III [Leuconostoc gasicomitatum LMG 18811]
          Length = 233

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 101/213 (47%), Gaps = 10/213 (4%)

Query: 17  FANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           F + SLL++ALT  +  + +Q+     Y+RLEFLGD ++ + ++  LF  + +  EG+L+
Sbjct: 18  FNDDSLLQEALTQRNYLNEHQDESGRDYQRLEFLGDSVMQVSVAEYLFKRYPNWHEGQLT 77

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
               ++V   + +  +R + L   IR+             S+  D+ E+ I ALYLD G+
Sbjct: 78  EMRIAMVQTRSFAHFSRVVHLNEGIRLGKGEEMSGARDRDSLLEDIWEAFIGALYLDQGL 137

Query: 133 EVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGP--DHDPR 188
           E    F+D+     A+ +  F R  D K+ LQE    K G    Y  T    P   +   
Sbjct: 138 EAVSVFLDQTLFA-AIDTDFFDRFIDFKSRLQEKLQ-KNGAVDIYYRTESEQPLAGNTQL 195

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           F   + +     A+G   S + AE+ AA   LK
Sbjct: 196 FEASISVDDHELARGTGKSIKDAEKAAARTALK 228


>gi|330945754|gb|EGH47188.1| ribonuclease III [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 164

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/140 (35%), Positives = 69/140 (49%), Gaps = 2/140 (1%)

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF  F  A+EG+LS     LV  ET + +AR  DL  ++R+ S   K       SI AD 
Sbjct: 12  LFERFPQAREGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADA 71

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           +E+LI A+YLD G+E A   V  +      +L      +D KT LQE+  ++    P Y+
Sbjct: 72  LEALIGAIYLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACELPRYE 131

Query: 177 VTFRSGPDHDPRFTVVVEIS 196
           V    G  H   F V  EI+
Sbjct: 132 VVDIQGEPHCRTFFVECEIN 151


>gi|326334475|ref|ZP_08200686.1| ribonuclease 3 [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325693244|gb|EGD35172.1| ribonuclease 3 [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 255

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 99/217 (45%), Gaps = 16/217 (7%)

Query: 9   LEKRIGYAFANRSLLEKALT---HSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           +EK +G+        E+A T   + S    +  SYERLEFLGD ILG +I+  +F    +
Sbjct: 22  MEKLLGFPPKEIRYYEEAFTLGSNRSQDLGHPISYERLEFLGDAILGAVIAHFVFLQAPN 81

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+L+     +V  +  +Q+  EL L  +++     RK +     +I  +++E+L+ A
Sbjct: 82  KDEGDLTKMRTRMVRRDNLNQIGEELQLREYLQTE---RKSLL-LSGNISGNLLEALVGA 137

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA---KTELQEWA---HAKFGVTPEYKVTF 179
           +YLD G + A  F+ +      L            K+ + EWA   H       E   T+
Sbjct: 138 IYLDRGYQKATEFIHRILIDANLSMKDLENKVISYKSLMVEWAQKYHKTIAFIAEEDPTY 197

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           +    +   F   V I+     +  D SK+ AE+ AA
Sbjct: 198 KGKIKY---FQARVMINDKVYTKAHDTSKKKAEERAA 231


>gi|299473645|emb|CBN78039.1| RNAseIII [Ectocarpus siliculosus]
          Length = 523

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 69/128 (53%), Gaps = 9/128 (7%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           +E  +GY F +R LL  ALTH S    +H+    ++ LE+LGD +L L +S+ LF     
Sbjct: 17  VEHALGYCFGDRRLLLTALTHRSFCNETHTASGDFDELEWLGDSVLQLAVSSWLFRSAKG 76

Query: 66  AKE--GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
           ++   G+LS      V +  C   AR+L+L  ++R+     + V    T I AD  E+++
Sbjct: 77  SRRSSGQLSATRQRFVDSHACESFARQLNLLPYLRIGHG--QPVGG--TKILADCFEAVL 132

Query: 124 AALYLDGG 131
            A+Y+D G
Sbjct: 133 GAVYVDAG 140


>gi|332638233|ref|ZP_08417096.1| ribonuclease III [Weissella cibaria KACC 11862]
          Length = 232

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 100/207 (48%), Gaps = 8/207 (3%)

Query: 17  FANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           F + SLLE+ALT ++  + +       Y+RLEFLGD ++    +  LF  +    EG L+
Sbjct: 17  FNDVSLLEEALTQANYINEHPNYTGNDYQRLEFLGDAVMQQSTAVYLFKRYPEWDEGRLT 76

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
               S+V     + ++REL L  ++++             S+  D+ E+ I AL+LD G 
Sbjct: 77  ELRISMVQTRAFAALSRELHLDQYVQLGRGEELSGARNRDSLLEDLWEAFIGALFLDQGQ 136

Query: 133 EVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEY-KVTFRSGPDHDPRF 189
           +V   F+      + +  G + R  D K++LQE       V   Y K+  R   +++  F
Sbjct: 137 DVVMHFLGDIMFNK-IDEGFYDRFVDYKSKLQEHLQRHGSVKITYTKLGERPVENNEQIF 195

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAA 216
           TV V ++    A G   S + AE+VAA
Sbjct: 196 TVQVAVNDQVLATGEGKSTKEAEKVAA 222


>gi|147770295|emb|CAN62473.1| hypothetical protein VITISV_005321 [Vitis vinifera]
          Length = 287

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 76/143 (53%), Gaps = 18/143 (12%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +E+ +GY+F N+ LLE+A TH+S   + Q SYERLEF+GD +L LLI+   F  +   + 
Sbjct: 33  VEQILGYSFTNKRLLEEAYTHASCQKN-QFSYERLEFMGDSVLSLLITKEQFFLYPDLQP 91

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ------------ 115
           G L+   ++ V  E  ++VA +  L  F+R     + + +  F  +I+            
Sbjct: 92  GRLTRLRSANVDKEKLARVALKHGLHRFLRHKKPKIEQQIYEFAEAIKEYPLHSNGQIEV 151

Query: 116 ----ADVVESLIAALYLDGGIEV 134
               ADVVES I A+++D    V
Sbjct: 152 PKVLADVVESTIGAVFVDCNCSV 174


>gi|170076696|ref|YP_001733334.1| ribonuclease III [Synechococcus sp. PCC 7002]
 gi|169884365|gb|ACA98078.1| ribonuclease III [Synechococcus sp. PCC 7002]
          Length = 239

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 97/192 (50%), Gaps = 9/192 (4%)

Query: 22  LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
           LL+ ALTH SIS    ++YE+LEF+GD ++ L  S +L+  + +   GE +   + LVS 
Sbjct: 29  LLDLALTHPSISPD--KNYEQLEFIGDAVVRLAASEVLYAEYPAEPVGEFAAIRSILVSD 86

Query: 82  ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL-DGGIEVAGTFVD 140
            T ++ A   +L  ++           +   S+ AD  E+++ AL+L    + +   ++D
Sbjct: 87  RTLAEFAHRYNLKKYLSYHGHYH---GAGEISLLADAFEAMLGALFLTTNDLSLVHPWLD 143

Query: 141 KYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH-DPRFTVVVEISG 197
           ++ + +A  +K    R + K  LQ W+  ++   P Y+VT      H + RF   V++  
Sbjct: 144 EHLRHKAAEIKQDPARENYKDALQTWSQGEYQKLPTYQVTENPEFRHEEERFLAEVKLGD 203

Query: 198 LAPAQGMDCSKR 209
               +G+  SK+
Sbjct: 204 TLLGKGVGRSKK 215


>gi|284992411|ref|YP_003410965.1| ribonuclease III [Geodermatophilus obscurus DSM 43160]
 gi|284065656|gb|ADB76594.1| ribonuclease III [Geodermatophilus obscurus DSM 43160]
          Length = 270

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 89/191 (46%), Gaps = 12/191 (6%)

Query: 28  THSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85
           TH S +  H    + ERLEFLGD +LGL+++  L+       EG L+    S+V+  + +
Sbjct: 51  THRSYAYEHGGLPTNERLEFLGDSVLGLVVTDELYQRHPDLPEGRLAKLRASVVNMTSLA 110

Query: 86  QVARELDLASFIRVSSDLRKDVCSF---MTSIQADVVESLIAALYLDGGIEVAGTFV--- 139
            VAR L            R +  +      SI AD VE++I A+++  G++ A   V   
Sbjct: 111 GVARRLGDGGLGPHLLLGRGEETTGGRDKDSILADAVEAIIGAVHVGLGLDTAAAIVHRL 170

Query: 140 -DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
            D    Q A +      D KT LQE   A+ G+     V   +GPDH   FT  V ++G 
Sbjct: 171 FDPLLDQAATRGAGL--DWKTSLQELG-ARLGLGAPTYVVEDTGPDHAKTFTAAVVLAGT 227

Query: 199 APAQGMDCSKR 209
              +G   +K+
Sbjct: 228 VYGRGAGRTKK 238


>gi|126662618|ref|ZP_01733617.1| putative ribonuclease III [Flavobacteria bacterium BAL38]
 gi|126625997|gb|EAZ96686.1| putative ribonuclease III [Flavobacteria bacterium BAL38]
          Length = 260

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 78/147 (53%), Gaps = 13/147 (8%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           +  + K +G+        +KA TH S +   ++    +YERLEFLGD +LG +I+  L+N
Sbjct: 34  FEKITKILGFEPKELRYYKKAFTHRSTNKVDEKGNPFNYERLEFLGDAMLGSVIAAHLYN 93

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI--RVSSDLRKDVCSFMTSIQADVV 119
              S  EG L+   + +VS E  +++ R+ +L  F+  +V+S+       F  +I  ++ 
Sbjct: 94  EVPSGDEGYLTKMRSKIVSREHLNELGRDFNLVHFVESKVNSN------QFGENIHGNLF 147

Query: 120 ESLIAALYLDGGIEVAGTFV-DKYWKQ 145
           E+ I A+YLD G      F+ +K  KQ
Sbjct: 148 EAFIGAIYLDRGFTYCEMFIRNKIIKQ 174


>gi|39939094|ref|NP_950860.1| dsRNA-specific ribonuclease [Onion yellows phytoplasma OY-M]
 gi|81402281|sp|Q6YPW7|RNC_ONYPE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|39722203|dbj|BAD04693.1| dsRNA-specific ribonuclease [Onion yellows phytoplasma OY-M]
          Length = 238

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/202 (31%), Positives = 99/202 (49%), Gaps = 11/202 (5%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFD 64
           TL + +     N +L ++ALTHSS S+     QE  ERLEFLGD I+GLL++  L++   
Sbjct: 6   TLFQTLNITPQNLTLYKQALTHSSYSNEQNPPQEDNERLEFLGDAIVGLLMADYLYSQ-S 64

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS-SDLRKDVCSFMTSIQADVVESLI 123
              EG ++ +    V   + +  A  ++L +++ +   +  KD  +   SI AD  E+L 
Sbjct: 65  KEDEGIMTKKRAQAVCERSLTIYAHNIELQNYLLLGKGEKNKDFNA--KSIIADTFEALF 122

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            A+YLD G   A             K+  +  D KT+LQE   ++   T +YK+    GP
Sbjct: 123 GAIYLDLGYLTAKKVFHNIVLPHLAKT-IYIIDFKTQLQEIVQSE-KKTIQYKIVQEQGP 180

Query: 184 DHDPRFT--VVVEISGLAPAQG 203
            H   F   V +E + L   +G
Sbjct: 181 AHSKNFVAEVYLEKNLLGTGEG 202


>gi|115292171|emb|CAK32533.1| putative dicer-like protein [Mucor circinelloides]
          Length = 1529

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 72/149 (48%), Gaps = 23/149 (15%)

Query: 13   IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            +GY F N +L+ +ALTH+S+++S    Y+RLEFLGD +L   ++  LF  + +A  G L 
Sbjct: 1258 LGYEFQNEALIAEALTHASVTNSSVPCYQRLEFLGDAVLDFCVTNYLFEKYHTAPPGTLH 1317

Query: 73   VRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM-------------------T 112
                S V+ +  S +  +L L   IR  S+     V  F                     
Sbjct: 1318 DLRKSSVNNDILSVLCIQLGLHVHIRHFSTTFPSAVKQFQELVVASQDEKGEYWLNFNPP 1377

Query: 113  SIQADVVESLIAALYLDGGIE---VAGTF 138
             + +DVVESLI A+++D G     V G F
Sbjct: 1378 KVLSDVVESLIGAVFVDAGFNLDPVLGLF 1406



 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 20/112 (17%)

Query: 37   QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96
            ++ Y+RLEFLGD +L  + ST +F     + E EL+     ++S     + A +L L  +
Sbjct: 1076 EKDYQRLEFLGDSVLKFITSTYVFVTLPISNEFELTESRMRMISNTALFKSAIQLRLYEY 1135

Query: 97   I----------RVSSDLRKDVCSFMT----------SIQADVVESLIAALYL 128
            I          R  + L KD  + M              ADVVES + A YL
Sbjct: 1136 ICSQNLPRRFYRPPNYLCKDDSAEMIKSLTYHKLSDKTLADVVESTLGASYL 1187


>gi|17231599|ref|NP_488147.1| ribonuclease III [Nostoc sp. PCC 7120]
 gi|17133242|dbj|BAB75806.1| ribonuclease III [Nostoc sp. PCC 7120]
          Length = 202

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 77/143 (53%), Gaps = 4/143 (2%)

Query: 39  SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
           +YE+LEF+GD ++ L  + +L+  +     G+ +   + LVS    +Q+ARE  L   + 
Sbjct: 6   NYEQLEFVGDAVVRLAAAVMLWETYPDCPVGDFAAIRSVLVSDRILAQLAREYGLELHLL 65

Query: 99  VSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIEVAGTFVDKYWKQRA--LKSGKFRR 155
           V+     D     + + AD  E+++ ALYL    +E+   ++D +++Q A  ++    R 
Sbjct: 66  VAGSATSDKIGQESRL-ADAFEAVLGALYLSTSNLELIRPWLDHHFRQLAAEIRLDPARL 124

Query: 156 DAKTELQEWAHAKFGVTPEYKVT 178
           + K  LQEW  A+F V PEY+V 
Sbjct: 125 NYKAALQEWTQAQFKVLPEYRVV 147


>gi|270001216|gb|EEZ97663.1| hypothetical protein TcasGA2_TC016208 [Tribolium castaneum]
          Length = 1063

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/134 (32%), Positives = 77/134 (57%), Gaps = 6/134 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64
           +  E+ +G  F +  LL +A T  S+ ++     S +RLEFLGD +L L+ S  L+ +F 
Sbjct: 869 TKFEESVGLQFNHIRLLARAFTDRSVGYTNLTLGSNQRLEFLGDTVLQLIASEYLYKYFP 928

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG LS+  +SLV+  T + V  +L ++++  V ++ + ++    T  +AD++E+ I 
Sbjct: 929 EHHEGHLSLLRSSLVNNRTQAVVCDDLGMSNYA-VYNNPKAEL---KTKDRADLLEAFIG 984

Query: 125 ALYLDGGIEVAGTF 138
           ALY+D G+E    F
Sbjct: 985 ALYVDQGLEFCEVF 998



 Score = 58.5 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 43/124 (34%), Positives = 67/124 (54%), Gaps = 13/124 (10%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
           T S+I+H+     ERLEFLGD ++  L S  LF  F   +EG L+    ++V  +  + +
Sbjct: 718 TESNITHN-----ERLEFLGDAVVEFLSSIHLFYTFPDLEEGGLATYRAAIVQNQHLAVL 772

Query: 88  ARELDLASFIRVS--SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145
           A+ L L  F+  +  SDL  D+   +    A+  E+L+ AL+LDGGI V    VD+ + +
Sbjct: 773 AKTLKLDQFMLYAHGSDLCHDL--ELRHAMANCFEALMGALFLDGGINV----VDRVFSE 826

Query: 146 RALK 149
              K
Sbjct: 827 TLFK 830


>gi|281421655|ref|ZP_06252654.1| ribonuclease 3 [Prevotella copri DSM 18205]
 gi|281404289|gb|EFB34969.1| ribonuclease 3 [Prevotella copri DSM 18205]
          Length = 360

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 113/226 (50%), Gaps = 15/226 (6%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y +L + +G+   + S  + AL H SI H   +    + ERLEFLGD +L  ++  +++ 
Sbjct: 20  YLSLYEILGFYPHDISYYKMALLHKSIMHRNSKGKPVNNERLEFLGDAVLDAVVGDIVYQ 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF   +EG L+   + LV  +T +++A+E+ +   I +S+       S+M     +  E+
Sbjct: 80  HFPGKREGFLTNTRSKLVQRDTLNKLAQEMGINQLI-LSNGHSSSHNSYMG---GNAFEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178
           L+ A+YLD G +    F+ K    + +   K      + K++L EW+  K  V  ++ V 
Sbjct: 136 LVGAIYLDRGYDACMYFMQKRILAQMINIDKVAYKEVNFKSKLIEWSQ-KNRVKLDF-VM 193

Query: 179 FRSGPDHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                D +  P FT  V + G+    G   SK+ ++QVA+   L++
Sbjct: 194 LDQQKDKNGSPIFTYQVVLEGVDGGVGKGYSKKESQQVASKTSLEK 239


>gi|307169891|gb|EFN62400.1| Ribonuclease 3 [Camponotus floridanus]
          Length = 1167

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/138 (31%), Positives = 73/138 (52%), Gaps = 6/138 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  SI ++     S +RLEFLGD +L L++S  L+  
Sbjct: 990  KLTKFEESIGIEFTHIRLLARAFTDRSIGYTNLTLGSNQRLEFLGDTVLQLIVSEYLYKF 1049

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG LS+  +SLV+ +T + V  +L +  +    +          T  +AD++E+ 
Sbjct: 1050 FPEHHEGHLSLLRSSLVNNKTQAVVCDDLGMTQYALYGN----PKAELKTKDRADLLEAF 1105

Query: 123  IAALYLDGGIEVAGTFVD 140
            + ALY+D G++    F D
Sbjct: 1106 LGALYVDKGLKYCHVFCD 1123



 Score = 63.5 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/128 (35%), Positives = 72/128 (56%), Gaps = 13/128 (10%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
           K  T SSI+H+     ERLEFLGD ++  L S  LF+ F   +EG L+    ++V  +  
Sbjct: 838 KTETESSIAHN-----ERLEFLGDAVVEFLTSIHLFHMFPDLEEGGLATYRAAIVQNQHL 892

Query: 85  SQVARELDLASFIRVS--SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
           + +A++L L  ++  +  SDL  D+   +    A+  E+L+ +L+LDGGIEVA    D+ 
Sbjct: 893 AVLAKKLSLEEYMLYAHGSDLCHDL--ELRHAMANCFEALMGSLFLDGGIEVA----DRV 946

Query: 143 WKQRALKS 150
           + +   KS
Sbjct: 947 FGETLFKS 954


>gi|228472309|ref|ZP_04057075.1| ribonuclease 3 [Capnocytophaga gingivalis ATCC 33624]
 gi|228276512|gb|EEK15236.1| ribonuclease 3 [Capnocytophaga gingivalis ATCC 33624]
          Length = 232

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 100/226 (44%), Gaps = 19/226 (8%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           +E+ +G+        E+A T  ++   S     SYERLEFLGD ILG +I+  +F     
Sbjct: 1   MEQLLGFPPKEIHYYEEAFTLGTVRTDSAQPHISYERLEFLGDAILGAVIAHFVFLQAPD 60

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT-SIQADVVESLIA 124
             EG+L+     +V  E  +Q+  +L L  +      L  D  + ++ +I  +++E+L+ 
Sbjct: 61  KNEGDLTKMRTRMVRRENLNQIGEDLRLREY------LLADKHTLLSGNIAGNLLEALVG 114

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA---KTELQEWA---HAKFGVTPEYKVT 178
           A+YLD G   A  F+ +      L            K+ + EWA   H       E   T
Sbjct: 115 AIYLDRGYSKATEFIHRILIDTNLSMRDLENKVISYKSLMVEWAQKYHKTIAFVSEEDPT 174

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           ++    +   F   V I+    A+  D SK+ AE+ AA     R G
Sbjct: 175 YKGRTKY---FQAKVMINDKVFAKAHDTSKKKAEERAAKRAFFRAG 217


>gi|218189575|gb|EEC72002.1| hypothetical protein OsI_04862 [Oryza sativa Indica Group]
          Length = 1858

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 79/152 (51%), Gaps = 23/152 (15%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +  LE ++GY+F+ + LL +ALTH S      +  YERLEFLGD +L +L++  LFN   
Sbjct: 1175 FEMLEAKLGYSFSVKGLLVEALTHPSQQELGAKYCYERLEFLGDAVLDILLTRYLFNSHK 1234

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQ-------- 115
               EGEL+   ++ V+ E  +QVA + +   F++ SS L  D +  ++  ++        
Sbjct: 1235 DTNEGELTDLRSASVNNENFAQVAVKHNFHHFLQHSSGLLLDQITEYVNRLEGSSMDKVE 1294

Query: 116  -------------ADVVESLIAALYLDGGIEV 134
                          D+VES+  A+ LD  +++
Sbjct: 1295 LLSDGLPKGPKVLGDIVESIAGAILLDTKLDL 1326


>gi|224116530|ref|XP_002317324.1| predicted protein [Populus trichocarpa]
 gi|222860389|gb|EEE97936.1| predicted protein [Populus trichocarpa]
          Length = 217

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 75/142 (52%), Gaps = 23/142 (16%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +EK + Y F N+  LE+ALTHSS + S   SY+R+EFLGD  LGL +S  ++  +     
Sbjct: 8   VEKILNYKFKNKRHLEEALTHSSYTDS--ASYQRMEFLGDAALGLALSNYVYLAYPQLDP 65

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIR----------------VSSDLRKDVCSFMT 112
           G LS+   + +S E  ++VA +  L  F+R                VS +   D   +  
Sbjct: 66  GHLSLLRAANISTEKLARVAIKHGLYRFVRHNATALDDKVKEFSDAVSGEDDDDALVYGG 125

Query: 113 SIQ-----ADVVESLIAALYLD 129
           SI+     AD+VES+ AA+Y+D
Sbjct: 126 SIKAPKILADIVESVAAAVYVD 147


>gi|222619725|gb|EEE55857.1| hypothetical protein OsJ_04485 [Oryza sativa Japonica Group]
          Length = 1839

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 79/152 (51%), Gaps = 23/152 (15%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +  LE ++GY+F+ + LL +ALTH S      +  YERLEFLGD +L +L++  LFN   
Sbjct: 1175 FEMLEAKLGYSFSVKGLLVEALTHPSQQELGAKYCYERLEFLGDAVLDILLTRYLFNSHK 1234

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQ-------- 115
               EGEL+   ++ V+ E  +QVA + +   F++ SS L  D +  ++  ++        
Sbjct: 1235 DTNEGELTDLRSASVNNENFAQVAVKHNFHHFLQHSSGLLLDQITEYVNRLEGSSMDKVE 1294

Query: 116  -------------ADVVESLIAALYLDGGIEV 134
                          D+VES+  A+ LD  +++
Sbjct: 1295 LLSDGLPKGPKVLGDIVESIAGAILLDTKLDL 1326


>gi|301107618|ref|XP_002902891.1| ribonuclease 3, putative [Phytophthora infestans T30-4]
 gi|262098009|gb|EEY56061.1| ribonuclease 3, putative [Phytophthora infestans T30-4]
          Length = 312

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 88/186 (47%), Gaps = 20/186 (10%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSI--SHSYQE-------SYERLEFLGDRILGLLISTLL 59
           L++RIG  F + +LL+ ALTH     ++   E       S   LEFLGD +LG   +  +
Sbjct: 126 LQERIGVKFQDVTLLQSALTHHGCLPTNPVPEDVPVVRLSNRSLEFLGDSLLGAAAAGYV 185

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD-----VCSFMTSI 114
           +      +EG+LS   ++LV+ +T S+++ +L +   +       +      V     +I
Sbjct: 186 YQMLPRHQEGQLSRAKSALVNNDTLSKISADLGITDLLLWPPGFNEARGAPLVAKGRVTI 245

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD----AKTELQEWAHAKFG 170
            A  VESLIAA+YLD G+E A  FV      R+++     RD       ELQ      + 
Sbjct: 246 AAGSVESLIAAIYLDQGMETAMKFVTTQILPRSVEYAT--RDVIWEPIVELQNLLQGHYY 303

Query: 171 VTPEYK 176
             P YK
Sbjct: 304 GQPVYK 309


>gi|115441737|ref|NP_001045148.1| Os01g0909200 [Oryza sativa Japonica Group]
 gi|75321191|sp|Q5N870|DCL3A_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 3a; AltName:
            Full=Dicer-like protein 3a; Short=OsDCL3a
 gi|56785369|dbj|BAD82327.1| putative Endoribonuclease Dicer homolog [Oryza sativa Japonica Group]
 gi|113534679|dbj|BAF07062.1| Os01g0909200 [Oryza sativa Japonica Group]
          Length = 1651

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 79/152 (51%), Gaps = 23/152 (15%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +  LE ++GY+F+ + LL +ALTH S      +  YERLEFLGD +L +L++  LFN   
Sbjct: 1241 FEMLEAKLGYSFSVKGLLVEALTHPSQQELGAKYCYERLEFLGDAVLDILLTRYLFNSHK 1300

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQ-------- 115
               EGEL+   ++ V+ E  +QVA + +   F++ SS L  D +  ++  ++        
Sbjct: 1301 DTNEGELTDLRSASVNNENFAQVAVKHNFHHFLQHSSGLLLDQITEYVNRLEGSSMDKVE 1360

Query: 116  -------------ADVVESLIAALYLDGGIEV 134
                          D+VES+  A+ LD  +++
Sbjct: 1361 LLSDGLPKGPKVLGDIVESIAGAILLDTKLDL 1392



 Score = 43.9 bits (102), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 4/94 (4%)

Query: 7    STLEKRIGYAFANRS--LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            S L   IGY+ +N S  L+ +A+T    S  +  S ERLE LGD +L   +S  LF  F 
Sbjct: 1032 SQLRSEIGYSDSNISSFLILEAITTLRCSEDF--SMERLELLGDSVLKYAVSCHLFLKFP 1089

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
            +  EG+LS     ++   T  ++  E ++  ++R
Sbjct: 1090 NKDEGQLSSIRCHMICNATLYKLGIERNVQGYVR 1123


>gi|260436673|ref|ZP_05790643.1| ribonuclease III [Synechococcus sp. WH 8109]
 gi|260414547|gb|EEX07843.1| ribonuclease III [Synechococcus sp. WH 8109]
          Length = 241

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 94/205 (45%), Gaps = 7/205 (3%)

Query: 21  SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
           +L+++ALTH  +S     + ERLEFLGD +L L  +  +         G  S     LVS
Sbjct: 28  ALVDQALTH--VSSGRTRNLERLEFLGDAVLRLAATEFIDRDHTDLAVGACSNLRAQLVS 85

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIEVAGTFV 139
               + V   LD+   + V    + D  S  + ++AD  E+LI ALY   G +E    ++
Sbjct: 86  DRWLADVGSALDIEQHLLVGRHAQGDR-SAQSRLRADATEALIGALYSALGNVEAIHRWL 144

Query: 140 DKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEIS 196
             +W    +A+ +   + + KT LQEW+  +    P Y     S    DP RF   V I 
Sbjct: 145 TPHWCATAQAVLTNPHQFNGKTTLQEWSQGQGLGLPNYATEECSRQHGDPERFRCRVSIQ 204

Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLK 221
               A+    S++ AEQ AA   L+
Sbjct: 205 DRELAEAKGRSRKEAEQNAATAALQ 229


>gi|313206470|ref|YP_004045647.1| rnase iii [Riemerella anatipestifer DSM 15868]
 gi|312445786|gb|ADQ82141.1| RNAse III [Riemerella anatipestifer DSM 15868]
 gi|315023589|gb|EFT36593.1| Ribonuclease III [Riemerella anatipestifer RA-YM]
 gi|325336084|gb|ADZ12358.1| dsRNA-specific ribonuclease [Riemerella anatipestifer RA-GD]
          Length = 247

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 98/210 (46%), Gaps = 11/210 (5%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LEK +G      S  ++A +  S S   Q +Y+RLEFLGD +LG ++S  L+  +    E
Sbjct: 30  LEKILGIQPKEVSWYQEAFSLKSTSS--QLNYDRLEFLGDAVLGSIVSYYLYRQYPQESE 87

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G L+   + +V+ +  +Q+  +L+L S +       K+   F+  +  +++E+L+ A+Y+
Sbjct: 88  GFLTQMKSKIVNRKNLNQIGEKLNLTSLV------LKNGSKFVADLSGNLLEALVGAIYM 141

Query: 129 DGGIEVAGTFV--DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D G E     V          LK        K+ L EW+  K  +  +YK      P   
Sbjct: 142 DFGYEKCQKVVLSKILTHSEMLKLENKIISYKSLLLEWSQ-KNKIKIDYKTEEEFLPSKV 200

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             F   + + G   A   + SK+ +E+ AA
Sbjct: 201 KMFKTYIFVGGSKVASATETSKKKSEEKAA 230


>gi|312384091|gb|EFR28902.1| hypothetical protein AND_02573 [Anopheles darlingi]
          Length = 1155

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 107/226 (47%), Gaps = 18/226 (7%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66
            E  IG  F +  LL +A T  S  ++     + +RLEFLGD +L L+ +  ++ HF   
Sbjct: 679 FEDSIGVKFNHIRLLARAFTDRSRGYTALTLGTNQRLEFLGDAVLKLIGTEHVYRHFPKH 738

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
               L+   N LVS  T + V  +L +A +  +S+             +AD++E+ I AL
Sbjct: 739 HSQHLADWRNQLVSNRTLATVCDDLGMAHYAIISN----PKTELKMKDRADLLEAFIGAL 794

Query: 127 YLDGGIEVAGTFVDK--YWKQRALKSGKFRRDAKTELQEWAHAK---FGVTPE---YKVT 178
           Y+D G+       +   + + + L   + R D KT+LQ+  HA    +G TP+   YK+ 
Sbjct: 795 YVDKGLLHCEKLCEVCLFPRLQELIENQERNDPKTKLQQHCHATHPMYGSTPDHPLYKLI 854

Query: 179 FRSGPDHDPRFTVVVEISG--LAPAQGMDCSKRAAEQVAAAEVLKR 222
              G   +   TV V   G  LA A G   S R AE+ AA   L++
Sbjct: 855 GCIGSMKNRVCTVGVYFRGKQLAIANGH--SIRQAEENAARLALEQ 898



 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 72/170 (42%), Gaps = 48/170 (28%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS----------------------------------- 33
           LEK+I Y F NR  L+ ALTH + +                                   
Sbjct: 463 LEKQIDYRFTNRYTLQLALTHRTYANNGGTNPDHVRNVLANCGILNMNPRKRNVHSMIRP 522

Query: 34  HSYQES--------YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85
           HS ++S         ERL FLGD ++    S  LF+ F +  EG LSV   ++V  +   
Sbjct: 523 HSGKKSETAFNRRHNERLAFLGDAVIVFSASVPLFHMFPNLGEGGLSVYRGAIVEKQHLV 582

Query: 86  QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
            +A++L L  F+R +        +      AD  ++L+ AL LDGGI VA
Sbjct: 583 VLAKKLHLEEFLRCAHG-----SAASNRTVADCFQALMGALLLDGGIAVA 627


>gi|163786802|ref|ZP_02181250.1| hypothetical protein FBALC1_16492 [Flavobacteriales bacterium
           ALC-1]
 gi|159878662|gb|EDP72718.1| hypothetical protein FBALC1_16492 [Flavobacteriales bacterium
           ALC-1]
          Length = 247

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 99/200 (49%), Gaps = 22/200 (11%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           L+K +G+   ++SL  KA TH S++   +     +YERLEF+GD +L  +I+  LF    
Sbjct: 23  LKKILGFKPKSKSLYIKAFTHRSMNIKNKNGNAINYERLEFVGDAMLSSVIAAYLFEQVP 82

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG L+   + +VS E  +++ ++L L   ++     R    +F  +I  ++ E+L+ 
Sbjct: 83  HGDEGYLTKMRSKVVSREHLNELGKDLGLIDLVQS----RIPKSNFGNNIHGNLFEALVG 138

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKS--------GKFRRDAKTELQEWAHAKFGVTPEYK 176
           A+YLD G +    F +K+  +R +          GK     K+ L EW   K   T +Y 
Sbjct: 139 AIYLDKGYK----FCEKFIYKRVINPYVDIETLEGKV-ISYKSLLIEWCQ-KEKNTFDYN 192

Query: 177 VTFRSGPDHDPRFTVVVEIS 196
           V   +G D    F+V + I+
Sbjct: 193 VYEDTGKDELKHFSVKLSIN 212


>gi|94272417|ref|ZP_01292119.1| Ribonuclease III [delta proteobacterium MLMS-1]
 gi|93450139|gb|EAT01469.1| Ribonuclease III [delta proteobacterium MLMS-1]
          Length = 156

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 64/134 (47%), Gaps = 1/134 (0%)

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           +LV+ E  + +AR+L L  FIR+             SI A   E+L+ A+YLDGG E A 
Sbjct: 1   ALVNEEHLAGMARQLALGEFIRLGRGEEATGGRDKPSILAATFEALVGAVYLDGGYEPAL 60

Query: 137 TFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
             +   +          R  D+K+ LQE    + G  P Y +    GPDHD RFTV VE+
Sbjct: 61  ALLRPLFAPWVANPPLPRISDSKSALQEVLQQRHGEGPVYYLENEEGPDHDKRFTVRVEL 120

Query: 196 SGLAPAQGMDCSKR 209
            G    +G    K+
Sbjct: 121 QGKVLGRGRGRGKK 134


>gi|311977725|ref|YP_003986845.1| probable ribonuclease 3 [Acanthamoeba polyphaga mimivirus]
 gi|82000280|sp|Q5UQT7|RNC_MIMIV RecName: Full=Probable ribonuclease 3; AltName: Full=Ribonuclease
           III; Short=RNase III
 gi|55416962|gb|AAV50612.1| RNAse III (dsRNA binding motif) [Acanthamoeba polyphaga mimivirus]
 gi|308204768|gb|ADO18569.1| probable ribonuclease 3 [Acanthamoeba polyphaga mimivirus]
          Length = 538

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 100/200 (50%), Gaps = 20/200 (10%)

Query: 31  SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90
           SI    ++S ERL+FLGD ++  +I   LFN +  + EG L+     L ++E+   +A++
Sbjct: 341 SIVRLQKKSNERLQFLGDAVIHFIIGEYLFNKYADSGEGYLTRLRCKLENSESLFFLAKQ 400

Query: 91  LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS 150
            D++S++ +S ++         +I    +E+ + ALYL+ G+   GT      KQ  L+ 
Sbjct: 401 SDISSYLLISQNIEVLHGRENVNIIGGGLEAFVGALYLNIGL---GTV-----KQFLLEI 452

Query: 151 GKFRRD----AKTE-------LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
            +   D    A+ E       LQ +   K+G  P YK+    GPDH   FT+ + +    
Sbjct: 453 MRIELDINQIAENETNYKDLILQLYNKNKWG-HPVYKILKEEGPDHCKIFTMGLYLGNKL 511

Query: 200 PAQGMDCSKRAAEQVAAAEV 219
              G   SK+ AEQ+A+ ++
Sbjct: 512 MGIGKASSKKKAEQIASKKM 531



 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 100/216 (46%), Gaps = 14/216 (6%)

Query: 17  FANRSLLEKALTH-SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
           + +  + E+A+ H S+I     ++YERLE+LGD I  ++I+   ++ ++   EG L+   
Sbjct: 40  YVDMHIFEEAMLHVSTIYEESDKTYERLEYLGDAIFHMIITEYFYHRYNEENEGFLTRLR 99

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
             +   ++  ++++ L L +F+++         S    I  D+ ES I A YL+ G++  
Sbjct: 100 IRIERGDSMVELSKNLGLNNFVQIYG------ISLNDHILEDIFESFIGAFYLNFGMKYT 153

Query: 136 GTFVDKYWKQRALKSGKFRRDAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
             F+ K  ++    S     D   +   L+ +   K+G  P+Y       P ++ R   +
Sbjct: 154 RLFIIKLIEKHKNLSELIAYDDNYKDLLLRYFHQMKWG-HPKYIEEIVIDPKNNQRNKFI 212

Query: 193 VEISGL---APAQGMDCSKRAAEQVAAAEVLKREGI 225
            ++          G   +K+ +EQ+A+   L   G+
Sbjct: 213 SKVKNPFDKVIGIGSASTKKKSEQLASQMALTNLGV 248


>gi|255577153|ref|XP_002529460.1| ribonuclease III, putative [Ricinus communis]
 gi|223531076|gb|EEF32926.1| ribonuclease III, putative [Ricinus communis]
          Length = 342

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 75/143 (52%), Gaps = 22/143 (15%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S +EK + Y F N+ L+E+ALTHSS + S   +Y+RLEF+GD  LGL +S  +F  +   
Sbjct: 8   SAVEKILNYTFKNKQLVEEALTHSSYTAS--PNYQRLEFIGDAALGLALSNHVFLAYPDL 65

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD-VCSF--------------- 110
             G LS+   + +S E  ++VA +  L  F+R ++    D V  F               
Sbjct: 66  DPGHLSLLRAANISTEKLARVAVKHGLFRFLRHNATALDDKVKEFSDAVLREEDEAVAHG 125

Query: 111 ----MTSIQADVVESLIAALYLD 129
                  + AD+VES+ AA+Y+D
Sbjct: 126 GTVKAPKVLADIVESVAAAVYVD 148


>gi|158334880|ref|YP_001516052.1| ribonuclease III [Acaryochloris marina MBIC11017]
 gi|158305121|gb|ABW26738.1| ribonuclease III [Acaryochloris marina MBIC11017]
          Length = 247

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 69/208 (33%), Positives = 92/208 (44%), Gaps = 26/208 (12%)

Query: 5   RYSTLEKRI------GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58
           R   LEK I      G A     LL+ ALTH S S   + +YE+LEF+GD ++ LL + L
Sbjct: 8   RQRQLEKLIQRLGLPGNAPIRWDLLDLALTHPSASG--RANYEQLEFVGDSVVRLLAAVL 65

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L         GE S   + LVS    + +A    L  F+ +     KD      S  AD 
Sbjct: 66  LQAENAQGSVGEWSAIRSVLVSDRHLATLAANYGLDRFLLLGPSTLKDRRG-QDSRLADA 124

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDA-----KTELQEWAHAKFGV 171
            E+++ ALYL  G       + + W Q  L  K+ + R D      K  LQ+W  A +  
Sbjct: 125 FEAVLGALYLSTG----DLSLIQPWLQDPLRNKAEQVRIDPAYQNYKAALQQWTQAVYQQ 180

Query: 172 TPEYKVTFRSGPDHDP------RFTVVV 193
            PEY+V   S P  DP      RFT  V
Sbjct: 181 LPEYRVQETSPPSQDPSDVMADRFTAEV 208


>gi|166368821|ref|YP_001661094.1| ribonuclease III [Microcystis aeruginosa NIES-843]
 gi|166091194|dbj|BAG05902.1| ribonuclease III [Microcystis aeruginosa NIES-843]
          Length = 234

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 85/159 (53%), Gaps = 6/159 (3%)

Query: 22  LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
           LL+ ALTH SIS    ++YE+LEF+GD ++ L  + +L   +  A  GE +   + +VS 
Sbjct: 31  LLDLALTHPSISRD--KNYEQLEFVGDSVVRLAAAEVLLETYPEALVGEFAALRSMMVSD 88

Query: 82  ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV-AGTFVD 140
            T ++ A       ++ VSS    D    ++ + AD  E+++ ALYL     V   +++D
Sbjct: 89  RTLAEFADRYGFERYLLVSSSTSIDQAGRISRL-ADAFEAVLGALYLSTQTMVLVRSWLD 147

Query: 141 KYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           +  +++A  ++    R++ K  LQEW  A +   P+Y V
Sbjct: 148 EPLREKAAEIRRDPARQNYKDALQEWTQATYKKLPQYLV 186


>gi|332519389|ref|ZP_08395856.1| ribonuclease III [Lacinutrix algicola 5H-3-7-4]
 gi|332045237|gb|EGI81430.1| ribonuclease III [Lacinutrix algicola 5H-3-7-4]
          Length = 247

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 97/205 (47%), Gaps = 12/205 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61
           + T+ + IGY        + A TH S+    S     +YERLEFLGD +L  +I+  L+ 
Sbjct: 19  FITVSQIIGYKPKTIKHFKTAFTHRSMNIRNSKGNIVNYERLEFLGDAMLSAVIAHHLYE 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
              S  EG L+   + +VS E  +++ R+L L +   V S + K    F  +I  ++ ES
Sbjct: 79  EVPSGDEGYLTKMRSKVVSREHLNELGRDLKLINL--VESKIPKG--QFGDNIHGNLFES 134

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA---KTELQEWAHAKFGVTPEYKVT 178
           L+ A+YLDGG +    F+ K      +   +        K+ L EW   K   T +Y V 
Sbjct: 135 LVGAIYLDGGFKACEKFIYKRVITPFVDIEQLEGKVISYKSLLIEWCQ-KEKKTFDYNVY 193

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQG 203
             +G D+   F+V + I     ++G
Sbjct: 194 EDTGNDNIRHFSVKLSIDNKIVSKG 218


>gi|262340868|ref|YP_003283723.1| ribonuclease III [Blattabacterium sp. (Blattella germanica) str.
           Bge]
 gi|262272205|gb|ACY40113.1| ribonuclease III [Blattabacterium sp. (Blattella germanica) str.
           Bge]
          Length = 250

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 107/224 (47%), Gaps = 24/224 (10%)

Query: 9   LEKRIGYAFANRSLLEKALTHS------SISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           L K +G+   N   L++   +S      +++ +Y  +++RLEFLGD +L  +IS  L   
Sbjct: 22  LIKILGFCPKNTKFLKEVFIYSFSTKRKNLNPNYSVNFQRLEFLGDAVLNSIISHFLCEK 81

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
               KEGEL+   + +V     ++++R+L +A        L K V S   +I  + +E+L
Sbjct: 82  LPEKKEGELTQIRSKIVCRRNLNEISRKLTIADIF-----LEKSVTS--DNILGNTLEAL 134

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA---KTELQEWAHA-KFGVTPEYKVT 178
           I  +YL+ G +    FV +      +   K + +    K  + EW+   KF +  +   T
Sbjct: 135 IGFIYLEIGYQGCKNFVHQKILHSHVNITKLQNEIFSYKVWMIEWSQKNKFLINFK---T 191

Query: 179 FRSGPDHDPRFTVVV-EISGLA---PAQGMDCSKRAAEQVAAAE 218
           FR   D D    + + E++ L      +G   SK+ +E++AA E
Sbjct: 192 FREKEDKDKNLIIYLSELTILGFEIQTKGRGSSKKKSEEMAAKE 235


>gi|282858948|ref|ZP_06268088.1| ribonuclease III [Prevotella bivia JCVIHMP010]
 gi|282588330|gb|EFB93495.1| ribonuclease III [Prevotella bivia JCVIHMP010]
          Length = 333

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 111/225 (49%), Gaps = 13/225 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y +L +  G    + S  + AL H S+S   ++    + ERLEFLGD +L  +++ +++ 
Sbjct: 20  YLSLYQITGLIPHDISYYKTALLHKSVSRRNEKGKLVNNERLEFLGDAVLDCVVADIVYE 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F + +EG L+   + LV  ET ++V+ E+ +   ++ +       C    ++  +  E+
Sbjct: 80  RFPNKREGFLTNTRSKLVKRETLNKVSTEMGIDKMLKQNGHTVTHNC----NVAGNAFEA 135

Query: 122 LIAALYLDGGIEVAGTFVDK--YWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEY-KV 177
           L+ ALYLD G +    F+    +     ++   +R  + K++L EW   K  VT  + +V
Sbjct: 136 LVGALYLDHGYDACMNFMRNRVFGHLVNVEKMAYREMNYKSKLIEWTQ-KNKVTVIFDEV 194

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              +  + +P F   V I  +   +G   +K+ ++Q AA +  +R
Sbjct: 195 NTSTDENGNPVFLAQVIIGNVRCEEGKGFTKKESQQNAAKQTYRR 239


>gi|78780081|ref|YP_398193.1| RNAse III [Prochlorococcus marinus str. MIT 9312]
 gi|78713580|gb|ABB50757.1| RNAse III [Prochlorococcus marinus str. MIT 9312]
          Length = 249

 Score = 68.9 bits (167), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 7/204 (3%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
             +A  HSS       +YE+LEF GD +L L  S  +  ++     GE S     +VS E
Sbjct: 42  FNQAFIHSSEDKII--NYEKLEFFGDAVLRLAASNFIEKNYPQMSVGERSELRAQIVSDE 99

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY-LDGGIEVAGTFVDK 141
             +++ R++D+   I        D  S   +I  +  E+LI A+Y     I+    ++D 
Sbjct: 100 WLTKLGRKIDIEKLIIKGPKALGDQNS-KNTIIGEATEALIGAVYKCFNSIQEVNLWLDD 158

Query: 142 YWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISGL 198
            W++ +       ++  +KT LQEW  +K    P YK+   S  + DP RF+  + + GL
Sbjct: 159 IWEEDSEIFLKAPYKFKSKTVLQEWCQSKGFDLPVYKIIEVSKKNGDPKRFSCDIFVEGL 218

Query: 199 APAQGMDCSKRAAEQVAAAEVLKR 222
             +     S + AE  AA  ++++
Sbjct: 219 KESSAFGKSHKQAETNAAKVLIEK 242


>gi|260591983|ref|ZP_05857441.1| ribonuclease 3 [Prevotella veroralis F0319]
 gi|260536267|gb|EEX18884.1| ribonuclease 3 [Prevotella veroralis F0319]
          Length = 354

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 106/225 (47%), Gaps = 13/225 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y +L   IG+   N    + AL H SI+    +    + ERLEFLGD IL  ++  +++ 
Sbjct: 20  YLSLYHIIGFIPHNIDYYKTALLHKSIARRNAKGKPVNNERLEFLGDAILDAIVGDIVYE 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF   +EG L+   + +V  +T +++A+E+ +   I +S+       S+M     +  E+
Sbjct: 80  HFPYKREGFLTNTRSKIVQRDTLNRLAKEMGINQLI-LSNGHSSSHNSYMG---GNAFEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYK-V 177
           L+ ALYLD G      F+ K      +   K      + K++L EW+  K  V  E++ +
Sbjct: 136 LVGALYLDHGYNACMEFMRKQILGELINIDKVAYKEVNFKSKLIEWSQ-KNKVNMEFRLI 194

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                    P F   V +  +A  +G   SK+  +Q AA   L+R
Sbjct: 195 EHEKDKQGSPTFHFQVFMEEIACGEGRGYSKKEGQQEAAKLTLQR 239


>gi|167234451|ref|NP_001107840.1| Dicer-2 [Tribolium castaneum]
 gi|270002830|gb|EEZ99277.1| hypothetical protein TcasGA2_TC001108 [Tribolium castaneum]
          Length = 1623

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 39/108 (36%), Positives = 64/108 (59%), Gaps = 2/108 (1%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHF 63
            ++  +E+R+GY F NR+ L +ALTHSS S +    SYERLEFLGD +L  LI+  +F H 
Sbjct: 1370 QWREIEQRLGYTFTNRAFLLQALTHSSYSPNRITLSYERLEFLGDAVLDFLITCYIFEHC 1429

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASF-IRVSSDLRKDVCSF 110
               + G+++   +SLV+  T + +        F + ++S+L+  +  F
Sbjct: 1430 GHLEPGQVTDLRSSLVNNNTFASLVVRCGFHKFLLMMNSNLQGHIDKF 1477


>gi|33862159|ref|NP_893720.1| putative ribonuclease III [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
 gi|33634377|emb|CAE20062.1| putative ribonuclease III [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
          Length = 249

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 100/204 (49%), Gaps = 7/204 (3%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
             +ALTHSS ++    +YE+LEF GD +L L  S  +   + S   G  S   + +VS E
Sbjct: 42  FNEALTHSSANNIV--NYEKLEFFGDAVLRLSASDFIERTYKSMSVGSRSELRSQIVSDE 99

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY-LDGGIEVAGTFVDK 141
             +++ +++ +   I        D  S   +I A+  E+LI A+Y     I     ++D 
Sbjct: 100 WLTELGKKIFIEKVIIKGPKAMGDENS-KDTIIAETSEALIGAIYKCFNSINEVNIWLDN 158

Query: 142 YWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISGL 198
           +WK+ A        + +AK+ LQEW  ++    P YK+   S    DP RF+  + I+G 
Sbjct: 159 FWKKDAELYLQAPHKYNAKSALQEWCQSQGFDLPIYKIYEVSKNHGDPKRFSCEIYINGS 218

Query: 199 APAQGMDCSKRAAEQVAAAEVLKR 222
             A     S + AE+ AA+ ++++
Sbjct: 219 KKAFSFGHSHKKAEKNAASILIQK 242


>gi|167046026|gb|ABZ10544.1| dicer-like protein C [Placozoa sp. DMJ-2008]
          Length = 352

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 78/162 (48%), Gaps = 35/162 (21%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LEK IGY+F N+  + +ALTHSS  H     ES ++LEFLGD IL  +I+   FN    A
Sbjct: 185 LEKVIGYSFQNKLFMIRALTHSSYHHHNIAIESNQKLEFLGDTILQYIIARHFFNSHPDA 244

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSFMTSI----------- 114
           K  +L     ++V+ +  + +   + ++ +I + S DL +D+  F+  I           
Sbjct: 245 KPAKLHDFQEAIVNNKCLADIGIAIGVSKYIFQESPDLFRDINQFVKIITCDYMIDDEMN 304

Query: 115 ---------------------QADVVESLIAALYLDGGIEVA 135
                                 +DVVE+LI A+Y+D G  +A
Sbjct: 305 YNDRTEALFENFTEEVKIPKPMSDVVEALIGAIYIDTGESIA 346


>gi|17227776|ref|NP_484324.1| ribonuclease III [Nostoc sp. PCC 7120]
 gi|22654062|sp|Q8Z023|RNC_ANASP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|17135258|dbj|BAB77804.1| ribonuclease III [Nostoc sp. PCC 7120]
          Length = 228

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 89/201 (44%), Gaps = 8/201 (3%)

Query: 17  FANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           F +  LL +ALTH S  +   E     ERLEFLGD IL  L    L+       E EL+ 
Sbjct: 7   FRDDKLLRRALTHRSYVNENPEEGEHNERLEFLGDAILNFLSGEYLYRSHPDRGEDELTR 66

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG--G 131
           R ++LV  +  ++ A E+ L   +R+     +D      ++ +   E++I A YLD    
Sbjct: 67  RRSALVDEKQLAKFAIEVGLDFKMRLGKGAIRDGGYQNPNLLSSTFEAVIGAYYLDNNSN 126

Query: 132 IEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR-SGPDHDPR 188
           IE     ++  ++    +    R   D+K   QEW     G TP   +T +  G  H P 
Sbjct: 127 IEAVRAIIEPLFESVPEQIVVVRSNVDSKNRFQEWVQRNIGPTPPKYLTEQIGGFSHAPE 186

Query: 189 FTVVVEISGLAPAQGMDCSKR 209
           F   V +      +G+  +K+
Sbjct: 187 FKATVLVGEKEYGEGIGKNKK 207


>gi|89889945|ref|ZP_01201456.1| ribonuclease III (Rnase III), double-stranded RNA binding motif
           [Flavobacteria bacterium BBFL7]
 gi|89518218|gb|EAS20874.1| ribonuclease III (Rnase III), double-stranded RNA binding motif
           [Flavobacteria bacterium BBFL7]
          Length = 246

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 70/137 (51%), Gaps = 8/137 (5%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           ++K  G    N  +  KA TH S+S    +    SYERLEFLGD ILG +I+  ++N   
Sbjct: 23  IKKITGITPKNIDIYRKAFTHKSMSLKDADGNPISYERLEFLGDAILGSVIAEYIYNEVP 82

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG L+   + +VS E  +++  +  L  F +     R    +F  ++  ++ E+L+ 
Sbjct: 83  HGDEGYLTKMRSKIVSREHLNELGLDFGLIDFAKTQVPER----NFGANVHGNLFEALVG 138

Query: 125 ALYLDGGIEVAGTFVDK 141
           A+YLD G +    F+ +
Sbjct: 139 AIYLDKGYKRTQNFISR 155


>gi|15828634|ref|NP_325994.1| ribonuclease III (RNase III) [Mycoplasma pulmonis UAB CTIP]
 gi|14089576|emb|CAC13336.1| RIBONUCLEASE III (RNASE III) [Mycoplasma pulmonis]
          Length = 241

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 107/209 (51%), Gaps = 13/209 (6%)

Query: 20  RSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDSAK--EGELSVRFN 76
           +++  +A TH++  + Y+ +SYE LEFLGD IL   +S  +F + +S K   G  ++  +
Sbjct: 37  KNIFFQAFTHTTFHNLYKAKSYEMLEFLGDAILQKNVSEYIFKNTESNKINPGTATLIRS 96

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
            LV+    S +A+EL L  F+ +     + V +    + +D+ ESL AA+Y+  G +V  
Sbjct: 97  KLVNKTCLSNLAKELKLDKFLLLPKGQEELVKN--EKVLSDLFESLCAAIYITKGNDVLE 154

Query: 137 TFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD-HDPRFTVVV 193
            F+ KY   K + L+  K  ++AK   QE   A      +Y ++F      ++ +     
Sbjct: 155 VFLQKYLYPKMQDLEY-KTLKNAKGRFQEIFQATTKSAGKYVISFDEEKKIYEAKLIHSE 213

Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            I G+    G   +K+ AEQ AA + LK+
Sbjct: 214 TIYGI----GYGKNKKEAEQNAAEDALKK 238


>gi|283769480|ref|ZP_06342376.1| ribonuclease III [Bulleidia extructa W1219]
 gi|283103748|gb|EFC05134.1| ribonuclease III [Bulleidia extructa W1219]
          Length = 226

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 88/188 (46%), Gaps = 8/188 (4%)

Query: 22  LLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           L+E+ALTHSS +  H  +   ERLEF+GD +L L  S  ++    +  EG+++   + LV
Sbjct: 19  LIEQALTHSSYANEHGSKADNERLEFMGDAVLQLWSSAQIYPL--NLSEGQMTRLRSQLV 76

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI----EVA 135
                +  +R+L L  +IR+             +I AD +E+ + AL+LD G+     + 
Sbjct: 77  CESALANYSRQLGLNQYIRLGKGEEHSGGREKDAIIADALEAFLGALFLDQGMLAVDLIL 136

Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
              +  + +Q        + D KT LQE   A    +  Y++    GP + P F +   +
Sbjct: 137 RQVITPHLQQAKEIVQGVQLDYKTRLQEVVQADSRRSLVYQLVSEKGPSNAPTFMMNAVV 196

Query: 196 SGLAPAQG 203
            GL    G
Sbjct: 197 DGLVLGTG 204


>gi|168039663|ref|XP_001772316.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162676303|gb|EDQ62787.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1275

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 117/248 (47%), Gaps = 34/248 (13%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           +S  + S LE  + Y F N+ LL +ALTH+S      + Y+RLEFLGD +L  LI+   +
Sbjct: 694 LSEAKVSELEILLNYKFQNKGLLVEALTHASCRRHSGDCYQRLEFLGDAVLDFLITKHFY 753

Query: 61  NHFDSAK--EGELSVRFNSLVSAETCSQVARELDLASF-IRVSSDLRKDVCSFM------ 111
            +  + K   G L+   ++ V+ E  ++VA   +L  + +  SSDL   V  ++      
Sbjct: 754 ANSANLKRDPGLLTDLRSAAVNNECFARVAVRHNLHLYLLHNSSDLAARVDKYVHGSTTD 813

Query: 112 -----------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKT 159
                        + +D+VESL  A++LD G ++   + V K   +  +     R +   
Sbjct: 814 AQCHGWNGDSGPKVLSDLVESLAGAVFLDSGYKLDTVWNVFKQLLKPLVTPATLRLEPIR 873

Query: 160 ELQEWAHA-KFGVTPEYKVTFRSGPDHDPRFTVVVE-----ISGLAPAQGMDCSKRAAEQ 213
           EL E     KFG  P YK    +  D D   TV VE     I+G+    G    +++A +
Sbjct: 874 ELWELCQTEKFG-EPNYKKKREAMGDFD--MTVTVELKDETITGV----GRKPDEKSARK 926

Query: 214 VAAAEVLK 221
           VAA + L+
Sbjct: 927 VAAIQALE 934



 Score = 42.4 bits (98), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 84/197 (42%), Gaps = 47/197 (23%)

Query: 21  SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
           +L+ +A+T S    S+  S E LE LGD  L + +S  LF   +   EGELS R  +L+ 
Sbjct: 512 NLMLEAITTSKCQESF--SLEGLELLGDAFLEVSVSERLFLLHNRLDEGELSKRRTNLIC 569

Query: 81  AETCSQVARE-----------------------LDLAS--FIR----------VSSDLRK 105
            +   ++ RE                       ++L S  +IR              +R+
Sbjct: 570 NKMLERLGRERGIMVSKSCRDTTRSTYKQFEIMINLVSENYIRDTQFSPKEWATPGRVRE 629

Query: 106 DVCSFMTSIQ----ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTEL 161
             C  +  +Q    ADV E+LI A Y+ GG+E A   +     +  + S   R +A+T +
Sbjct: 630 TQCK-LPPLQGKTIADVFEALIGAHYIHGGVEAAQAMMGWLGCEVGV-SSSIREEARTRV 687

Query: 162 QEWAHAKFGVTPEYKVT 178
               H +  +  E KV+
Sbjct: 688 ----HGQLELLSEAKVS 700


>gi|116618659|ref|YP_819030.1| dsRNA-specific ribonuclease [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|122271141|sp|Q03VW5|RNC_LEUMM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|116097506|gb|ABJ62657.1| RNAse III [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 236

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 88/177 (49%), Gaps = 7/177 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNH 62
           S + K+   +F + SLL +ALT  +  + + +     Y+RLEFLGD ++ ++++  LF  
Sbjct: 8   SYILKKFNISFNDESLLTEALTQRNYLNEHPDEKGRDYQRLEFLGDSVMQMIVAEYLFKR 67

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +    EG+L+    ++V   + +  +R + L   IR+             S+  D+ E+ 
Sbjct: 68  YPDWHEGQLTEMRIAMVQTRSFAHFSRMVHLNEGIRLGKGEEMSGARDRDSLLEDIWEAF 127

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177
           I ALYLD G +V   F+++     A+ +  F R  D K+ LQE    K  V  +Y+ 
Sbjct: 128 IGALYLDQGADVVRQFLNQTLFA-AIDTDFFDRFIDFKSRLQERLQTKGSVDIDYQT 183


>gi|255536416|ref|YP_003096787.1| Ribonuclease III [Flavobacteriaceae bacterium 3519-10]
 gi|255342612|gb|ACU08725.1| Ribonuclease III [Flavobacteriaceae bacterium 3519-10]
          Length = 254

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 104/224 (46%), Gaps = 35/224 (15%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           + K  G +  N +L  +A +  + S   Q ++YERLEFLGD +LG +IS  LF+ +  A 
Sbjct: 29  ISKITGCSVQNINLYREAFSLKTASPRTQVKNYERLEFLGDSVLGAIISCHLFSTYPHAN 88

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG L+   + +V+ +  +++  EL L  F++  S       +   +   +++E+LI ALY
Sbjct: 89  EGYLTQMKSKIVNRKNLNKLGDELGLTGFLQNESP-----STLSENTSGNLLEALIGALY 143

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRR------DAKTELQEWA-----HAKFGVTPEYK 176
           LD   E     V     +R L   +  +        K+ L EW+     H ++    E +
Sbjct: 144 LDVDYETCKKVV----LERLLTPSEINKLENKIVSYKSLLLEWSQKKKEHIRYDTEQEMQ 199

Query: 177 ----VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
               V FRS          V+ I+    A   + SK+ AE+ AA
Sbjct: 200 AGKNVVFRS----------VIWINDRKVANATETSKKKAEEKAA 233


>gi|78211701|ref|YP_380480.1| RNAse III [Synechococcus sp. CC9605]
 gi|78196160|gb|ABB33925.1| Ribonuclease III [Synechococcus sp. CC9605]
          Length = 241

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 93/204 (45%), Gaps = 7/204 (3%)

Query: 22  LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
           L+++A+TH  +S     + ERLEFLGD +L L  +  +  H      G  S     LVS 
Sbjct: 29  LVDQAMTH--VSSGRDRNLERLEFLGDAVLRLAATEFIDRHHADLTVGACSNLRAQLVSD 86

Query: 82  ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIEVAGTFVD 140
              + V   L +   + +    + D  S  + ++AD  E+LI ALY   G ++    ++ 
Sbjct: 87  RWLADVGEALGIEEHLLLGRHAQGDR-SARSRLRADATEALIGALYTALGNLKAIHRWLT 145

Query: 141 KYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISG 197
            +W    +A+ +   +   KT LQEW+  +    P Y     S    DP RF   V I G
Sbjct: 146 PHWSATTQAVLATPHQFGGKTTLQEWSQGQGLGLPRYATEECSRQHGDPERFRCQVSIQG 205

Query: 198 LAPAQGMDCSKRAAEQVAAAEVLK 221
              A+    S++ AEQ AA   L+
Sbjct: 206 RNLAEAKGRSRKEAEQNAATAALQ 229


>gi|125555283|gb|EAZ00889.1| hypothetical protein OsI_22916 [Oryza sativa Indica Group]
          Length = 276

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 74/148 (50%), Gaps = 19/148 (12%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTL 58
           M     + +E  +GY F +++L+E+ALTH S  + Y+   +YERLE+LGD +L  ++S  
Sbjct: 34  MGPGEVAAVESLLGYEFRDKALVEQALTHGSFYYPYRPGVTYERLEYLGDAVLTCVVSRE 93

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------ 111
           +F  +   + G L+    + V  E  ++VA    L  F+R  + +L   +  F+      
Sbjct: 94  VFLTYGQLQPGPLTRLRAANVDKEKLARVAVVHGLHHFLRHKAPNLDGQITDFIEELSMY 153

Query: 112 ----------TSIQADVVESLIAALYLD 129
                       +  DVVESLI A+Y D
Sbjct: 154 PIHSNGLLDPPKVLCDVVESLIGAIYCD 181


>gi|52548547|gb|AAU82396.1| ribonuclease III [uncultured archaeon GZfos17C7]
          Length = 248

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 75/125 (60%), Gaps = 8/125 (6%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLFNHFDSA 66
           LEK IG+ F N +LLE+A+T  S S+ + +S  Y+RLEFLGDR+L L+++  LF    SA
Sbjct: 3   LEKLIGHKFKNIALLEEAITTGSYSNEHPDSSDYQRLEFLGDRVLSLILAEELFKLSKSA 62

Query: 67  --KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+++     L +    ++    + L ++IR +++ R+D+      + ADV E++  
Sbjct: 63  SLDEGKMTFLKAELENNLRLAEYGENMGLRNYIR-ANEKREDI---RPKVIADVFEAICG 118

Query: 125 ALYLD 129
           A+Y D
Sbjct: 119 AVYQD 123


>gi|163754630|ref|ZP_02161752.1| putative ribonuclease III [Kordia algicida OT-1]
 gi|161325571|gb|EDP96898.1| putative ribonuclease III [Kordia algicida OT-1]
          Length = 244

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 76/138 (55%), Gaps = 8/138 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           ++ LE  +G+    + + +KA TH S++    +    +YERLEFLGD +L  +IS  LF 
Sbjct: 19  FAELEDILGFKTKRKKIYKKAFTHRSMNKKDAKGNSVNYERLEFLGDAMLSSVISAYLFT 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
              S  EG L+   + +VS E  +++ R+L L     V S + KD  +F  +I  ++ E+
Sbjct: 79  EVPSGNEGYLTKMRSKIVSREHLNELGRDLKLIDL--VQSRIPKD--NFGENIHGNLFEA 134

Query: 122 LIAALYLDGGIEVAGTFV 139
           LI A++LD G +    F+
Sbjct: 135 LIGAIFLDKGYKYCERFI 152


>gi|282881269|ref|ZP_06289955.1| ribonuclease III [Prevotella timonensis CRIS 5C-B1]
 gi|281304859|gb|EFA96933.1| ribonuclease III [Prevotella timonensis CRIS 5C-B1]
          Length = 347

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 106/233 (45%), Gaps = 24/233 (10%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           YS+L   IG+   + S  + AL H S+     +    + ERLEFLGD +L  ++  +++ 
Sbjct: 20  YSSLYNIIGFYPHDISYYKLALMHKSVMRRNAKGRPVNNERLEFLGDAVLDAIVGHIVYE 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF   +EG L+   + LV   T +++A E+ +               S  + +  +  E+
Sbjct: 80  HFPGKREGFLTNTRSKLVQRSTLNKLANEMGICK----LLLSSGRSSSHNSYVGGNAFEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178
           L+ A+YLD G +    F+        L   K      + K++L EW+          K+ 
Sbjct: 136 LVGAIYLDRGYDACMRFMKNRILSEMLNIDKVAYKEVNFKSKLIEWSQKN-----RVKIH 190

Query: 179 F-----RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA---EVLKRE 223
           F     +   + +P F  +VE+ G+    G   SK+ ++Q+A+    E LKR+
Sbjct: 191 FNLLEQKKDENGNPIFKYLVELEGIEGCSGEGFSKKESQQLASKLTLEQLKRQ 243


>gi|195997771|ref|XP_002108754.1| hypothetical protein TRIADDRAFT_18215 [Trichoplax adhaerens]
 gi|190589530|gb|EDV29552.1| hypothetical protein TRIADDRAFT_18215 [Trichoplax adhaerens]
          Length = 1018

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 35/162 (21%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LEK IGY+F N+  + +ALTHSS  H     ES ++LEFLGD IL  +I+   FN    A
Sbjct: 817 LEKVIGYSFQNKLFMIRALTHSSYHHHDIAIESNQKLEFLGDTILQYIIARHFFNSHPDA 876

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDV--------CSFMTSIQ-- 115
           K  +L     ++V+ +  + +   + ++ ++ + S DL +D+        C +M   +  
Sbjct: 877 KPAKLHDFQEAIVNNKCLAVIGIAIGVSKYVFQESPDLFRDIDQFAKIITCDYMIDDEMN 936

Query: 116 ----------------------ADVVESLIAALYLDGGIEVA 135
                                 +DVVE+LI A+Y+D G  +A
Sbjct: 937 YNDRTEALFENFTEEVKIPKPVSDVVEALIGAIYIDTGESIA 978


>gi|308190056|ref|YP_003922987.1| ribonuclease III [Mycoplasma fermentans JER]
 gi|319777350|ref|YP_004137001.1| ribonuclease iii [Mycoplasma fermentans M64]
 gi|238809526|dbj|BAH69316.1| hypothetical protein [Mycoplasma fermentans PG18]
 gi|307624798|gb|ADN69103.1| ribonuclease III [Mycoplasma fermentans JER]
 gi|318038425|gb|ADV34624.1| Ribonuclease III [Mycoplasma fermentans M64]
          Length = 236

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 97/193 (50%), Gaps = 20/193 (10%)

Query: 39  SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI- 97
           +Y+ LEFLGD IL  L S  +F  F +   G +++  + LV  ++ ++++ ++ L  F+ 
Sbjct: 52  NYQDLEFLGDAILQYLSSDFVFKKFPNLSAGNMTLIRSKLVCTKSLNEISTKIGLKDFLL 111

Query: 98  ----RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153
               ++S D ++ V      + AD+ E+ IAA+YLD  ++V   F++K      +K G F
Sbjct: 112 TAPGQMSKDAKRSV-----KVGADIFEAFIAAIYLDTNLKVVKEFLNKTVFD--IKIGDF 164

Query: 154 R----RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
                +DAKT  QE   +   +   Y V+ +S  + +       +I G+    G   SK 
Sbjct: 165 DIKHLKDAKTAFQEQIQSFSKLAVMYIVSEKSPTEFEAHAVHDNKIYGI----GFGKSKA 220

Query: 210 AAEQVAAAEVLKR 222
            AE+ AA + L +
Sbjct: 221 EAEENAALDALHK 233


>gi|193216954|ref|YP_002000196.1| ribonuclease III [Mycoplasma arthritidis 158L3-1]
 gi|193002277|gb|ACF07492.1| ribonuclease III [Mycoplasma arthritidis 158L3-1]
          Length = 222

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 93/201 (46%), Gaps = 7/201 (3%)

Query: 25  KALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           K+LTH S   S  ++ +YE LEFLGD +L    S  +F +F    EGE +     +VS E
Sbjct: 20  KSLTHKSFDQSDHFKFNYEYLEFLGDAVLEFYTSDRIFQNFPKYTEGEATRHRQMIVSNE 79

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTS-IQADVVESLIAALYLDGGIEVAGTFVDK 141
             +++A ++ L    R    + +++ +   S + +D+ ES I ALY   GI     ++D 
Sbjct: 80  NLAKIAHKIGLVEIARFGKKVFEEIKNIPNSKVFSDMFESFIGALYFGLGIGPTFQYLDS 139

Query: 142 YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201
                 L      +D K+  QE   A   ++   ++ + +   ++  F   + +      
Sbjct: 140 VLLDSVLNVID-SKDPKSYFQEIIQANGNLS---RLRYVTVAQNNGEFKSELLVDQKVFG 195

Query: 202 QGMDCSKRAAEQVAAAEVLKR 222
            G   SK+ AE+ AA   LK+
Sbjct: 196 VGYGHSKKQAEKAAAISALKK 216


>gi|325859734|ref|ZP_08172864.1| ribonuclease III [Prevotella denticola CRIS 18C-A]
 gi|327312785|ref|YP_004328222.1| ribonuclease III [Prevotella denticola F0289]
 gi|325482660|gb|EGC85663.1| ribonuclease III [Prevotella denticola CRIS 18C-A]
 gi|326945209|gb|AEA21094.1| ribonuclease III [Prevotella denticola F0289]
          Length = 356

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 106/225 (47%), Gaps = 13/225 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y +L + IG    + +  + AL H S++    +    + ERLEFLGD IL  ++  +++ 
Sbjct: 20  YLSLYQIIGIIPHDITYYKTALLHKSVARRNAKGKPVNNERLEFLGDAILDAIVGDIVYE 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF   +EG L+   + +V  +T +++A+E+ +   I  +        S  + +  +  E+
Sbjct: 80  HFPGKREGFLTNTRSKIVQRDTLNRLAKEMGINQLILSNG----HSSSHNSYLGGNAFEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYK-V 177
           L+ ALYLD G      F+        +   K      + K++L EW+  K  V  E+K +
Sbjct: 136 LVGALYLDHGYNACMKFMKTQILGELINIDKVAYKEVNFKSKLIEWSQ-KNKVKMEFKLI 194

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             +      P F   V + GL   +G   SK+ ++Q A+   L+R
Sbjct: 195 ENQKDKQGSPTFYFQVLMEGLPCGEGRGYSKKESQQEASKLTLQR 239


>gi|282855648|ref|ZP_06264959.1| ribonuclease 3 (Ribonuclease III) (RNase III) [Pyramidobacter
           piscolens W5455]
 gi|282586496|gb|EFB91753.1| ribonuclease 3 (Ribonuclease III) (RNase III) [Pyramidobacter
           piscolens W5455]
          Length = 253

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 95/223 (42%), Gaps = 13/223 (5%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLISTLLFNH 62
           R  +L+KR GY F +  LL  A T  S +     S   ERLEFLGD  L LL+   L+  
Sbjct: 13  RADSLQKRTGYQFRDPELLRLAFTQRSGAGGPNPSMNNERLEFLGDAALSLLVGEALYRE 72

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +  A EG +++  + LV     S    E      +RV      D      ++  D VE+ 
Sbjct: 73  YPEADEGFMTIERSKLVCGRNLSAWGYEAGFDQMLRVC-----DGVEVSDAMVEDSVEAA 127

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ-EWAHAKFGVTPEYKVTFRS 181
             A +LDGG++     +  +       +G    D++  L+ + ++ K G  P Y  T R 
Sbjct: 128 AGAFFLDGGLDAVRALLQSFSDYPDQGAGF---DSRRHLERDCSYEKLGA-PRYD-TMRR 182

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             +    F   V +       G+   +  AE+ AA + + R G
Sbjct: 183 RANGKIIFESSVSLDKEPSGTGIGADRTEAERNAARDAMCRLG 225


>gi|124486133|ref|YP_001030749.1| hypothetical protein Mlab_1315 [Methanocorpusculum labreanum Z]
 gi|124363674|gb|ABN07482.1| ribonuclease III [Methanocorpusculum labreanum Z]
          Length = 145

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 77/147 (52%), Gaps = 11/147 (7%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLL 59
           + YS L  +IGY FAN  LL  ALT ++ +     S  E+ + L  LGD +L L++   L
Sbjct: 1   MNYSDLYAKIGYTFANVDLLLHALTRTAYARENELSMSETMDSLAVLGDAVLDLIVIRRL 60

Query: 60  F--NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS-SDLRKDVCSFMTSIQA 116
                FD   +GE++ +   LV+     ++A ++ L  ++R    +LR  + +    + A
Sbjct: 61  IEEGEFD---KGEITRKKIDLVNMTVVRKLAEDIGLPEYMRWGKGELRMQIWTS-GRVSA 116

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYW 143
           +  E+L+ A YLDGG+E +   +D  W
Sbjct: 117 ECFEALMGAAYLDGGVEASSAILDHVW 143


>gi|115468004|ref|NP_001057601.1| Os06g0358800 [Oryza sativa Japonica Group]
 gi|75254269|sp|Q69KJ0|RTL3_ORYSJ RecName: Full=Ribonuclease 3-like protein 3; AltName:
           Full=Ribonuclease III-like protein 3; Short=RNase
           III-like protein 3
 gi|51091751|dbj|BAD36550.1| CAF protein-like [Oryza sativa Japonica Group]
 gi|113595641|dbj|BAF19515.1| Os06g0358800 [Oryza sativa Japonica Group]
 gi|125597181|gb|EAZ36961.1| hypothetical protein OsJ_21299 [Oryza sativa Japonica Group]
          Length = 299

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 74/148 (50%), Gaps = 19/148 (12%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTL 58
           M     + +E  +GY F +++L+E+ALTH S  + Y+   +YERLE+LGD +L  ++S  
Sbjct: 34  MGPGEVAAVESLLGYEFRDKALVEEALTHGSFYYPYRPGVTYERLEYLGDAVLTCVVSRE 93

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------ 111
           +F  +   + G L+    + V  E  ++VA    L  F+R  + +L   +  F+      
Sbjct: 94  VFLTYGQLQPGPLTRLRAANVDKEKLARVAVVHGLHHFLRHKAPNLDGQITDFIEELSMY 153

Query: 112 ----------TSIQADVVESLIAALYLD 129
                       +  DVVESLI A+Y D
Sbjct: 154 PIHSNGLLDPPKVLCDVVESLIGAIYCD 181


>gi|18402610|ref|NP_566661.1| RTL2 (RNASE THREE-LIKE PROTEIN 2); double-stranded RNA binding /
           ribonuclease III [Arabidopsis thaliana]
 gi|75274109|sp|Q9LTQ0|RTL2_ARATH RecName: Full=Ribonuclease 3-like protein 2; AltName:
           Full=Ribonuclease III-like protein 2; Short=RNase
           III-like protein 2; AltName: Full=Ribonuclease
           three-like protein 2
 gi|9294562|dbj|BAB02825.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642855|gb|AEE76376.1| RNAse THREE-like protein 2 [Arabidopsis thaliana]
          Length = 391

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 80/151 (52%), Gaps = 22/151 (14%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +EK + Y F+N+SLL++A+TH+S +     SYERLEF+GD  +GL IS  L+  + S + 
Sbjct: 63  VEKILNYKFSNKSLLKEAITHTSCTDF--PSYERLEFIGDSAIGLAISNYLYLTYPSLEP 120

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSD-LRKDVCSF----------------- 110
            +LS+   + VS E  ++V+    L SF+R ++  L + V  F                 
Sbjct: 121 HDLSLLRAANVSTEKLARVSLNHGLYSFLRRNAPSLDEKVKEFSEAVGKEDDLSVSYGGL 180

Query: 111 --MTSIQADVVESLIAALYLDGGIEVAGTFV 139
                + AD+ ESL  A+Y+D   ++   +V
Sbjct: 181 VKAPKVLADLFESLAGAVYVDVNFDLQRLWV 211


>gi|307150902|ref|YP_003886286.1| ribonuclease III [Cyanothece sp. PCC 7822]
 gi|306981130|gb|ADN13011.1| ribonuclease III [Cyanothece sp. PCC 7822]
          Length = 235

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 92/176 (52%), Gaps = 9/176 (5%)

Query: 8   TLEKRIGY---AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           TL +++G    A  N SLL+ AL H S S   + +Y++LEF+GD ++ L  + +L   + 
Sbjct: 14  TLVQKLGLPDTAAVNWSLLDLALIHPSFSR--EVNYQQLEFVGDAVVRLAAAEVLLETYP 71

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            A  GE +   + +VS  T ++ A    L  ++  S     D    ++ + AD  E+L+ 
Sbjct: 72  DALVGEFAALRSMMVSDRTLAEFADVYGLERYLLTSERSSTDEAGRVSRL-ADGFEALLG 130

Query: 125 ALYLDG-GIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           ALYL    +++   ++D+  + +A  ++    R + K  LQEW  A + + PEY+V
Sbjct: 131 ALYLSTHNMKLIRPWLDELLQNKAAEIRLDPARLNYKDALQEWTQAHYKLLPEYRV 186


>gi|325268333|ref|ZP_08134966.1| ribonuclease 3 [Prevotella multiformis DSM 16608]
 gi|324989475|gb|EGC21425.1| ribonuclease 3 [Prevotella multiformis DSM 16608]
          Length = 356

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 108/229 (47%), Gaps = 21/229 (9%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y +L + IG    + +  + AL H S++    +    + ERLEFLGD IL  ++  +++ 
Sbjct: 20  YLSLYQIIGIIPHDITYYKTALLHKSVARRNAKGKPVNNERLEFLGDAILDAIVGDIVYE 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF   +EG L+   + +V  +T +++A+E+ +   I  +        S  + +  +  E+
Sbjct: 80  HFPGKREGFLTNTRSKIVQRDTLNRLAKEMGINQLILSNG----HSSSHNSYLGGNAFEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL-------KSGKFRRDAKTELQEWAHAKFGVTPE 174
           L+ ALYLD G      F+    K R L       K      + K++L EW+  K  V  E
Sbjct: 136 LVGALYLDHGYNACMQFM----KTRILGELINIDKVAYKEVNFKSKLIEWSQ-KNKVKME 190

Query: 175 YK-VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +K +  +      P F   V + GL   +G   SK+ ++Q A+   L+R
Sbjct: 191 FKLIENQKDKQGSPTFYFQVLMEGLPCGEGRGYSKKESQQEASKLTLQR 239


>gi|213389868|gb|ACJ45995.1| putative ribonuclease III [Palm lethal yellowing phytoplasma]
          Length = 207

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 94/197 (47%), Gaps = 13/197 (6%)

Query: 19  NRSLLEKALTHSSISH--SYQES-YERLEFLGDRILGLLISTLLF--NHFDSAKEGELSV 73
           N SL   ALTHSS ++   +Q +  ERLEFLGD ++  L++  L+  N +D   EG ++ 
Sbjct: 16  NISLYINALTHSSYANESPFQNNDNERLEFLGDAVINFLMANYLYRKNKYD---EGSMTK 72

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           +    V  ++    A E+DL  +I +    +K       SI AD  E+L  A+YLD G E
Sbjct: 73  KRAQAVCIDSLLIYANEIDLKEYILLGKGEQKRYIH-NYSIIADAFEALFGAIYLDLGYE 131

Query: 134 -VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
            V  TF   Y     L       D KT+LQE   A+   T  YK+   +G  H+  F   
Sbjct: 132 QVKKTFY--YVVLPCLNKIIKIIDYKTQLQEIVQAE-KQTIHYKIIEETGLAHEKEFIAE 188

Query: 193 VEISGLAPAQGMDCSKR 209
           V ++      G   +K+
Sbjct: 189 VYLNNKLLGSGTGKTKK 205


>gi|310831171|ref|YP_003969814.1| putative dsRNA-specific ribonuclease III [Cafeteria roenbergensis
           virus BV-PW1]
 gi|309386355|gb|ADO67215.1| putative dsRNA-specific ribonuclease III [Cafeteria roenbergensis
           virus BV-PW1]
          Length = 362

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 86/198 (43%), Gaps = 15/198 (7%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
           +SYERLE+LGDR++ L++S  LF+ +    EG ++     +      S+++R++ L+ + 
Sbjct: 99  KSYERLEYLGDRVIKLIVSMYLFHRYPKQDEGFMTKLQTVIEDKNNLSKMSRDMGLSKYF 158

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
            +S  +             D+ E+   ALYL  G       +    + +   + K  R+ 
Sbjct: 159 IISKQIENIRGREAEKFNEDIFEAFFGALYLSNGFNSCLELLLNLLESQIDYAEKLYRNK 218

Query: 158 --KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF-----------TVVVEISGL--APAQ 202
             K +L  + H++    PEY      GP H   F           T++ E + L      
Sbjct: 219 NYKDQLLRYYHSQKWGYPEYYQIGEFGPSHKRNFIMGVKKDEHKETIITENNKLEIGLGY 278

Query: 203 GMDCSKRAAEQVAAAEVL 220
           G+   KR AEQ A+   L
Sbjct: 279 GVGNKKRDAEQSASKMAL 296


>gi|167046024|gb|ABZ10543.1| dicer-like protein C [Trichoplax adhaerens]
          Length = 358

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 35/162 (21%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LEK IGY+F N+  + +ALTHSS  H     ES ++LEFLGD IL  +I+   FN    A
Sbjct: 191 LEKVIGYSFQNKLFMIRALTHSSYHHHDIAIESNQKLEFLGDTILQYIIARHFFNSHPDA 250

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDV--------CSFMTSIQ-- 115
           K  +L     ++V+ +  + +   + ++ ++ + S DL +D+        C +M   +  
Sbjct: 251 KPAKLHDFQEAIVNNKCLAVIGIAIGVSKYVFQESPDLFRDIDQFAKIITCDYMIDDEMN 310

Query: 116 ----------------------ADVVESLIAALYLDGGIEVA 135
                                 +DVVE+LI A+Y+D G  +A
Sbjct: 311 YNDRTEALFENFTEEVKIPKPVSDVVEALIGAIYIDTGESIA 352


>gi|330717913|ref|ZP_08312513.1| ribonuclease III [Leuconostoc fallax KCTC 3537]
          Length = 236

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 100/220 (45%), Gaps = 8/220 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           L +    +F N +LL +ALT  +  + + +     Y+RLEFLGD ++   ++  LF  + 
Sbjct: 10  LNQTFAISFDNETLLLEALTQRNYLNEHPDETGRDYQRLEFLGDAVMQETVAEYLFRRYP 69

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+L+    ++V   + +  AR++ L   IR+      +      S+  D+ E+ I 
Sbjct: 70  KWHEGQLTEMRIAMVQTRSFAHFARQVRLNEAIRLGKGEEMNGARDRDSLLEDIWEAFIG 129

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182
           ALYLD G +    F+D      A+ +  F    D K+ LQE   A   V  +Y     + 
Sbjct: 130 ALYLDQGADTVKRFLDATLFA-AVDTDFFDHFIDFKSRLQEKLQANGPVDIDYNTISETI 188

Query: 183 -PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             D+   F   V +     A+G   S + AE+ AA + L 
Sbjct: 189 LADNSTCFEASVSLDDRELARGTGKSIKDAEKAAARKALN 228


>gi|157285013|gb|ABV31246.1| dicer-like 4 [Physcomitrella patens]
          Length = 1445

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 120/255 (47%), Gaps = 41/255 (16%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            +S  + S LE  + Y F N+ LL +ALTH+S      + Y+RL FLGD +L  LI+   +
Sbjct: 1169 LSEAKVSELEILLNYKFQNKGLLVEALTHASCRRHSGDCYQRLGFLGDAVLDFLITKHFY 1228

Query: 61   NHFDSAK--EGELSVRFNSLVSAETCSQVARELDLASF-IRVSSDL-----------RKD 106
             +  + K   G L+   ++ V+ E  ++VA   +L  + +  SSDL             D
Sbjct: 1229 ANSANLKRDPGLLTDLRSAAVNNECFARVAVRHNLHLYLLHNSSDLAARVDKYVHGSTTD 1288

Query: 107  VCSF-----------MTSIQ--ADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGK 152
            VC+             +S+Q  +D+VESL  A++LD G ++   + V K   +  +    
Sbjct: 1289 VCALSEAFLLSKHLSCSSMQVLSDLVESLAGAVFLDSGYKLDTVWNVFKQLLKPLVTPAT 1348

Query: 153  FRRDAKTELQEWAHA-KFGVTPEYKVTFRSGPDHDPRFTVVVE-----ISGLAPAQGMDC 206
             R +   EL E     KFG  P YK    +  D D   TV VE     I+G+    G   
Sbjct: 1349 LRLEPIRELWELCQTEKFG-EPNYKKKREAMGDFD--MTVTVELKDETITGV----GRKP 1401

Query: 207  SKRAAEQVAAAEVLK 221
             +++A +VAA + L+
Sbjct: 1402 DEKSARKVAAIQALE 1416



 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 82/172 (47%), Gaps = 22/172 (12%)

Query: 21   SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
            +L+ +A+T S    S+  S E LE LGD  L + +S  LF   +   EGELS R  +L+ 
Sbjct: 1012 NLMLEAITTSKCQESF--SLEGLELLGDAFLEVSVSERLFLLHNRLDEGELSKRRTNLIC 1069

Query: 81   AETCSQVARELDLASFIR----------VSSDLRKDVCSFMTSIQ----ADVVESLIAAL 126
             +   ++ RE  + ++IR              +R+  C  +  +Q    ADV E+LI A 
Sbjct: 1070 NKMLERLGRERGIMNYIRDTQFSPKEWATPGRVRETQCK-LPPLQGKTIADVFEALIGAH 1128

Query: 127  YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
            Y+ GG+E A   +     +  + S   R +A+T +    H +  +  E KV+
Sbjct: 1129 YIHGGVEAAQAMMGWLGCEVGV-SSSIREEARTRV----HGQLELLSEAKVS 1175


>gi|186681790|ref|YP_001864986.1| ribonuclease III [Nostoc punctiforme PCC 73102]
 gi|186464242|gb|ACC80043.1| ribonuclease III [Nostoc punctiforme PCC 73102]
          Length = 228

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 77/186 (41%), Gaps = 9/186 (4%)

Query: 17  FANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           F N  LL  ALTH S  H      E  ERLEFLGD +L  L    L+       E EL+ 
Sbjct: 7   FHNEKLLRHALTHRSYVHENPGEGEHNERLEFLGDALLNFLSGEYLYKCHPEMGEDELTR 66

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG--G 131
           R ++LV  +  ++ A E+ L   +R+      D      ++ +   E+++ A YLD    
Sbjct: 67  RRSALVDEKQLAKFAEEVGLDFRMRLGKGAILDGGYQNPNLLSSTFEAVLGAYYLDNDSN 126

Query: 132 IEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFR-SGPDHDP 187
           IE     ++  +     K     R   D+K   QEW        P    T +  GP H P
Sbjct: 127 IEAVRAIIEPLFDSVDPKHIVVSRSNVDSKNRFQEWVQRNVTPNPPKYFTEQIGGPSHAP 186

Query: 188 RFTVVV 193
            F   V
Sbjct: 187 EFIAKV 192


>gi|225453660|ref|XP_002268369.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1971

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 110/245 (44%), Gaps = 32/245 (13%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            + ++ + TLE  +   F NR LL +A+TH+S   S    Y+RLEF+GD +L  LI+  LF
Sbjct: 1627 LRSVNFDTLEGALNIKFNNRGLLIEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 1686

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ---- 115
              +     G L+    + V+ E  ++VA +  L   +R  SS L K +  F+  +Q    
Sbjct: 1687 FTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHIHLRHGSSALEKQIRDFVKEVQDELS 1746

Query: 116  ------------------ADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRD 156
                               D+VES+  A++LD G + A  + V +      +        
Sbjct: 1747 KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTAVVWKVFQPLLHPMVTPETLPMH 1806

Query: 157  AKTELQEWAHAKF-GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
               ELQE    +  G+  EYK T RSG       TV V I G+      +  K+ A+++A
Sbjct: 1807 PVRELQERCQQQAEGL--EYKAT-RSG----NLATVEVFIDGVQIGIAQNPQKKMAQKLA 1859

Query: 216  AAEVL 220
            A   L
Sbjct: 1860 ARNAL 1864



 Score = 39.7 bits (91), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 3/90 (3%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            L+  I Y      +LE ALT +S   ++   YER E LGD  L  ++S  LF  +    E
Sbjct: 1414 LKDVINYPVPAAKILE-ALTAASCQETF--CYERAELLGDAYLKWVVSRFLFLKYPQKHE 1470

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIR 98
            G+L+     +VS     Q A    L S+I+
Sbjct: 1471 GQLTRMRQQMVSNMVLYQSALCKGLQSYIQ 1500


>gi|332029751|gb|EGI69620.1| Endoribonuclease Dcr-1 [Acromyrmex echinatior]
          Length = 1257

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 34/158 (21%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
            TLE +IGY F NR+ L +A TH S  ++   E Y+RLEFLGD IL  LI+  ++ +  + 
Sbjct: 1003 TLESKIGYKFKNRAFLLQAFTHPSYTANGITECYQRLEFLGDAILDFLITCYIYENDVNL 1062

Query: 67   KEGELSVRFNSLVSAET--CSQVARELDLA-------------SFIRVSSD--------- 102
              G+L+   ++LV+  T  C  V   L  A              F+R   +         
Sbjct: 1063 SPGDLTDLRSALVNNITFACLSVRHGLHTALLAYAPKLHEIIDCFVRFQEERDYVVNDEL 1122

Query: 103  ----LRKDVCSF-----MTSIQADVVESLIAALYLDGG 131
                + +D C+      +  +  D+ ESLI A+YLD G
Sbjct: 1123 LYVLIEEDECNITEYVDVPKVLGDLFESLIGAIYLDSG 1160


>gi|300933883|ref|ZP_07149139.1| ribonuclease III [Corynebacterium resistens DSM 45100]
          Length = 264

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 80/167 (47%), Gaps = 13/167 (7%)

Query: 26  ALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83
           ALTH S ++      + ERLEFLGD +LGL ++  L+  F +  E E+S     +V+   
Sbjct: 41  ALTHRSFANENDNLPNNERLEFLGDAVLGLTVAEQLYRQFPNRTESEISKMRAGVVNMYA 100

Query: 84  CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143
            + VAREL+L   I +     +       SI +D VE+++ A+YL+ G   A   V + +
Sbjct: 101 LADVARELNLGPNILLGRGEMRTGGDDKHSILSDTVEAILGAIYLEHGFATARETVLRIF 160

Query: 144 KQRALKSGK--FRRDAKT---------ELQEWAHAKFGVTPEYKVTF 179
             R  ++       D KT         +L +  +A  G  PE+  TF
Sbjct: 161 SDRITEAPTVGLTMDWKTVLVEKLSDLKLGDAVYASHGEGPEHNQTF 207


>gi|157414210|ref|YP_001485076.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9215]
 gi|157388785|gb|ABV51490.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9215]
          Length = 249

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 93/204 (45%), Gaps = 7/204 (3%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
             +A  HSS       +YE+LEF GD +L L  S  +   +     GE S     +VS E
Sbjct: 42  FNQAFIHSSEDKII--NYEKLEFFGDAVLRLAASNFIEKKYPQMSVGERSELRAQIVSDE 99

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY-LDGGIEVAGTFVDK 141
             +++  ++D+   I        D  S   +I  +  E+LI A+Y     I+    ++D 
Sbjct: 100 WLTKLGEKIDIEKLIIKGPKALGDENS-KNTIIGEATEALIGAVYKCFNSIQEVNLWLDD 158

Query: 142 YWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISGL 198
            W++ +       ++  +KT LQEW  +K    P YK+   S  + DP RF+  + I GL
Sbjct: 159 IWEKDSEIFLKAPYKFKSKTVLQEWCQSKGFDLPIYKIIEFSKKNGDPKRFSCDIHIEGL 218

Query: 199 APAQGMDCSKRAAEQVAAAEVLKR 222
             +     S + AE  AA  ++++
Sbjct: 219 KESSAFGKSHKQAETNAARVLIEK 242


>gi|300741697|ref|ZP_07071718.1| ribonuclease III [Rothia dentocariosa M567]
 gi|311113800|ref|YP_003985022.1| ribonuclease III [Rothia dentocariosa ATCC 17931]
 gi|300380882|gb|EFJ77444.1| ribonuclease III [Rothia dentocariosa M567]
 gi|310945294|gb|ADP41588.1| ribonuclease III [Rothia dentocariosa ATCC 17931]
          Length = 228

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 88/197 (44%), Gaps = 23/197 (11%)

Query: 26  ALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83
           +LTH S +  +   E  ERLEFLGD +L L I+  ++       EGEL    + +VSA  
Sbjct: 27  SLTHRSYAFENPGVEHNERLEFLGDSVLSLAIAEEVYRRHPELPEGELVKLHHVVVSAPA 86

Query: 84  CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143
            +  AR+L+L   IR+    R    +   SI AD +E++  A Y+  G E A   V +  
Sbjct: 87  LAIAARKLELGKHIRLGKGERLTGGADKDSILADTMEAIFGATYISLGREAARELVLRLI 146

Query: 144 -----KQRALKSGKFRRDAKTELQ------EWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
                 ++ L SG   RD KT+LQ       W    + +  E       GPDH   +T  
Sbjct: 147 APMLEDEQILNSG---RDWKTDLQTLVTSRSWGDVTYEIEAE-------GPDHARVYTAR 196

Query: 193 VEISGLAPAQGMDCSKR 209
             ++      G   SK+
Sbjct: 197 AIVAKQTAGTGSGPSKK 213


>gi|17511264|gb|AAK68755.2| Unknown protein [Arabidopsis thaliana]
 gi|20148705|gb|AAM10243.1| unknown protein [Arabidopsis thaliana]
          Length = 391

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 80/151 (52%), Gaps = 22/151 (14%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +EK + Y F+N+SLL++A+TH+S +     SYERLEF+GD  +GL IS  L+  + S + 
Sbjct: 63  VEKILNYKFSNKSLLKEAVTHTSCTDF--PSYERLEFIGDSAIGLAISNYLYLTYPSLEP 120

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSD-LRKDVCSF----------------- 110
            +LS+   + VS E  ++V+    L SF+R ++  L + V  F                 
Sbjct: 121 HDLSLLRAANVSTEKLARVSLNHGLYSFLRRNAPSLDEKVKEFSEAVGKEDDLSVSYGGL 180

Query: 111 --MTSIQADVVESLIAALYLDGGIEVAGTFV 139
                + AD+ ESL  A+Y+D   ++   +V
Sbjct: 181 VKAPKVLADLFESLAGAVYVDVNFDLQRLWV 211


>gi|149921056|ref|ZP_01909515.1| ribonuclease III [Plesiocystis pacifica SIR-1]
 gi|149818060|gb|EDM77517.1| ribonuclease III [Plesiocystis pacifica SIR-1]
          Length = 244

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 92/197 (46%), Gaps = 17/197 (8%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +G+AFA   LL  ALT  S ++  ++    S   LEF GD +L L+ +  L+  F    E
Sbjct: 16  LGHAFAQPQLLRVALTVGSWANENRDAGWPSNACLEFFGDAVLDLVAADALWRRFPRLGE 75

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G L+    SLVS  + ++ AR +DL  +I +     +          AD +E+++ A +L
Sbjct: 76  GALTRLRASLVSERSLAKAARSIDLGRWIYLGRGDEQRGARERDGTLADALEAVLGAAFL 135

Query: 129 D-----GGIEVAGTFV-DKYWKQR----ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           D     G   VA   V ++ + +R    A + G    D K+ LQ+   A+  +TP Y   
Sbjct: 136 DAREAGGDPSVAAAQVFERLFGERVRSLAPEDGL---DPKSRLQQLVQAERRLTPVYVAI 192

Query: 179 FRSGPDHDPRFTVVVEI 195
               P  DP +   VE+
Sbjct: 193 GEPPPADDPHWRARVEL 209


>gi|52550203|gb|AAU84052.1| ribonuclease III [uncultured archaeon GZfos36D8]
          Length = 262

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 97/197 (49%), Gaps = 18/197 (9%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE  IG+ F N +LLE+A+T  S S  H    +Y+ LEFLGDR+L L+++  LF    SA
Sbjct: 19  LEASIGHQFKNIALLEEAITTGSYSNEHPGSSNYQTLEFLGDRVLSLILAEELFKLSKSA 78

Query: 67  K--EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+++     L +    ++    + L ++IR +++ R+D+      + ADV E++  
Sbjct: 79  SLDEGKMTFLKAELENNLRLAEYGENIGLRNYIR-ANEKREDI---RPKVIADVFEAICG 134

Query: 125 ALYLDGGIEVAGTFVDKYWK--------QRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           A+YLD    +    V K+          ++ + SGK     + + +     K    PE K
Sbjct: 135 AIYLDTEESIRIKEVKKFLLKFEILERIKKEMSSGKGFLPIRNQFENKFREKHRCNPEIK 194

Query: 177 VTFRS--GPDHDPRFTV 191
              +S  G +H  R+ +
Sbjct: 195 FEQKSTLGEEHPTRWRI 211


>gi|293192364|ref|ZP_06609475.1| ribonuclease III [Actinomyces odontolyticus F0309]
 gi|292820279|gb|EFF79273.1| ribonuclease III [Actinomyces odontolyticus F0309]
          Length = 240

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 96/208 (46%), Gaps = 9/208 (4%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL+ AL H S ++      + ERLEFLGD +L ++I+  L+  +    E +LS    + V
Sbjct: 30  LLQLALVHRSYANEAGGIANNERLEFLGDSVLSIVIAQKLYEQYPDVAESDLSRMRAATV 89

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
           S +  +  AR + L  F+ +             SI +D  E+LI A YL  G+E A   +
Sbjct: 90  SQQPLAAAARRIGLGDFVFLGKGESMHGGRDKDSILSDTFEALIGATYLTSGLEEARRVI 149

Query: 140 DK---YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
            +   +    A   G+  +D KT L E++ A+      Y+V    GPDH   FT    +S
Sbjct: 150 LERLSFLLVDAPSRGQ-HQDWKTILIEYSQAQGLGEVSYEVEGE-GPDHQRVFTARAFVS 207

Query: 197 GLAP--AQGMDCSKRAAEQVAAAEVLKR 222
                   G   SK+ AE  AA + + R
Sbjct: 208 ERPDPIGSGQASSKKHAENAAAQDAMSR 235


>gi|242059623|ref|XP_002458957.1| hypothetical protein SORBIDRAFT_03g043355 [Sorghum bicolor]
 gi|241930932|gb|EES04077.1| hypothetical protein SORBIDRAFT_03g043355 [Sorghum bicolor]
          Length = 1651

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 77/149 (51%), Gaps = 23/149 (15%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            LE ++GY F  + LL +ALTH S   S     Y+RLEFLGD +L +LI+  LF       
Sbjct: 1245 LEAKLGYTFQVKGLLIEALTHPSQQESGATYCYQRLEFLGDAVLDILITRHLFLSHKDTD 1304

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQ----------- 115
            EGEL+   ++ V+ E  +QVA + +L  F++ SS   +D +  ++ S++           
Sbjct: 1305 EGELTDLRSASVNNENFAQVAVKHNLHQFLQHSSGFLQDQITEYVNSLEGSSMDRTSLLS 1364

Query: 116  ----------ADVVESLIAALYLDGGIEV 134
                       D+VES+  A+ +D  +++
Sbjct: 1365 SGPSRGPKVLGDIVESIAGAILIDSKLDL 1393



 Score = 40.4 bits (93), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 73/196 (37%), Gaps = 63/196 (32%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
            S ERLE LGD +L   +S  LF  F +  EG+LS R    +   T  ++  E  +  +IR
Sbjct: 1066 SMERLELLGDSVLKYAVSAHLFMTFLNKHEGQLSSRRQETICNATLYRLGTERRIQGYIR 1125

Query: 99   ------------------------------VSSDLRKD-----------------VCSFM 111
                                          ++ D+ +                  +CS  
Sbjct: 1126 DAAFDPRRWLAPGQLSSRPCPCECPVKSEVITEDIHRIDDKSIIIGKACDKGHRWICSKT 1185

Query: 112  TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ----------RALKSGKFRRD-AKTE 160
             S   D VE++I A Y++GG++ A  F    W Q           AL S   R    K +
Sbjct: 1186 IS---DCVEAIIGAYYVEGGLKAA--FAVLKWLQIETLEEEQIMEALSSASVRNYLPKVD 1240

Query: 161  LQEWAHAKFGVTPEYK 176
            + E+  AK G T + K
Sbjct: 1241 VVEFLEAKLGYTFQVK 1256


>gi|268611358|ref|ZP_06145085.1| dsRNA-spesific ribonuclease [Ruminococcus flavefaciens FD-1]
          Length = 512

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 105/250 (42%), Gaps = 44/250 (17%)

Query: 13  IGYAFANRSLLEKALTHS--SISHSYQESYERLEFLGDRILGLLISTLLFNHF------- 63
           IGY F N +LL +A T    SI +  +ES E LEF GD++L ++I+  +++ F       
Sbjct: 170 IGYHFNNDNLLRQAFTRRAFSIEYGLEESNEILEFFGDQVLSMIITREMYSSFIVYSNHS 229

Query: 64  ------DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
                     EGEL+   +  ++ E  S  A EL L  +I   +           S + D
Sbjct: 230 VEAPFTSKFNEGELTKIRSKFINKEHLSARAAELGLDKYILYGTGEEPG-----DSARED 284

Query: 118 VVESLIAALYLDG--GIEVAGTFVDKYWKQRALKSGKFRR----DAKTELQEWAHAKFGV 171
           ++E+LI A+  D     +V    VDK     AL  G   R     A   L +W    FG 
Sbjct: 285 MMEALIGAVAADSNWNWKVIEDVVDKL---VALYFGNTERLLEESAYDRLNKWHQKHFGC 341

Query: 172 TPEYKVTFRSGPDHDP--------RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---- 219
            PEY+V      +  P        R++V     G+  AQ +D     +  +A A      
Sbjct: 342 MPEYEVRRVCTDEDSPSSRYICTLRYSVPSNDKGIRNAQRIDGRPGFSRSMARAYCANMA 401

Query: 220 ---LKREGIW 226
              +K+ G+W
Sbjct: 402 LIFIKKHGLW 411


>gi|312384317|gb|EFR29067.1| hypothetical protein AND_02261 [Anopheles darlingi]
          Length = 1651

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 74/163 (45%), Gaps = 33/163 (20%)

Query: 9    LEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            +E+ +GY F NR+ L +A TH++  +++  +SYE+LEFLGD +L  LI+  +F       
Sbjct: 1404 IERTVGYKFRNRTFLLQAFTHATYTTNTLTKSYEQLEFLGDAVLDFLITLYIFERNPHMS 1463

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ------------ 115
             G+L+   ++LV+  T + V     L  +I   S +  D       +Q            
Sbjct: 1464 PGQLTDLRSALVNNVTLACVLVRFRLHHYILSQSPMLTDKIDKFVEVQGQKRNRIGDWVR 1523

Query: 116  --------------------ADVVESLIAALYLDGGIEVAGTF 138
                                 DV E+LI A+YLD G ++  T+
Sbjct: 1524 LLTEESETPLAEYVDVPKVLGDVFEALIGAIYLDSGCDLVTTW 1566


>gi|226510363|ref|NP_001140816.1| hypothetical protein LOC100272891 [Zea mays]
 gi|194701228|gb|ACF84698.1| unknown [Zea mays]
          Length = 376

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 77/160 (48%), Gaps = 30/160 (18%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +E+ + Y F +R+LLE+ALTH S S     SY+RLEF+GD  LGL  S  L+    +   
Sbjct: 44  VERLLRYQFCDRALLEEALTHQSFSDGAL-SYQRLEFVGDAALGLAFSNFLYLTNPTLGP 102

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIR----------------VSSDLRKDVCSF-- 110
           G LS    + +S E  ++VA   DL   +R                V  +L  D+ +   
Sbjct: 103 GALSTLRAANISTEKLARVAVRHDLYPLLRRKCPRLDLLVGQFIESVKQELMHDLATAPY 162

Query: 111 ------MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
                    + AD+VE++ AA+Y+D   +     ++K WK
Sbjct: 163 GGSVVKAPKVLADIVEAIAAAVYVDCKFD-----LEKLWK 197


>gi|189502546|ref|YP_001958263.1| hypothetical protein Aasi_1206 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497987|gb|ACE06534.1| hypothetical protein Aasi_1206 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 241

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 103/212 (48%), Gaps = 17/212 (8%)

Query: 19  NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           N SL   AL HSS +   + S ERLEFLGD +L L+++  LF  +   +EG L+   + +
Sbjct: 37  NLSLYRLALQHSS-AKIEENSNERLEFLGDAVLSLVVAEYLFKKYPLQEEGFLTEIRSRI 95

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138
           V+  +  ++A+ + +   +  + D R      +  +  + +E+ I A+YLD G  +   F
Sbjct: 96  VNRASLGELAKRIGMDELL--TYDTRSVNHHNIKFVYGNALEAFIGAVYLDQGYALCAQF 153

Query: 139 -VDKYWKQRALKSGKFRRDA--KTELQEWA-----HAKFGVTPEYKVTFRSGPDHDPRFT 190
            VD+  K           D   K+++  WA     H +F +  E ++    G      F 
Sbjct: 154 IVDRLLKIHVDLETIVLTDNNYKSKIIAWAQKNRKHIQFILITEKRI---KGV---REFV 207

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           V + + G    +G+  +K+ AEQ+AA E LKR
Sbjct: 208 VQLLLEGEVYGEGVGKTKKQAEQMAAQESLKR 239


>gi|254526942|ref|ZP_05138994.1| ribonuclease III [Prochlorococcus marinus str. MIT 9202]
 gi|221538366|gb|EEE40819.1| ribonuclease III [Prochlorococcus marinus str. MIT 9202]
          Length = 249

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 93/204 (45%), Gaps = 7/204 (3%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
             +A  HSS       +YE+LEF GD +L L  S  +   +     GE S     +VS E
Sbjct: 42  FNQAFIHSSEDKII--NYEKLEFFGDAVLRLAASNFIEKKYPHMSVGERSELRAQIVSDE 99

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY-LDGGIEVAGTFVDK 141
             +++  E+D+   I        D  S   +I  +  E+LI A+Y     I+    ++D 
Sbjct: 100 WLTKLGGEIDIEKLIIKGPKALGDENS-KNTIIGESTEALIGAVYKCFNSIQEVNLWLDD 158

Query: 142 YWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISGL 198
            W++ +       ++  +KT LQEW  +K    P YK+   S  + DP RF+  + I GL
Sbjct: 159 IWEKDSEIFLKAPYKFKSKTVLQEWCQSKGFDLPVYKIIEFSKKNGDPKRFSCDIYIEGL 218

Query: 199 APAQGMDCSKRAAEQVAAAEVLKR 222
             +     S + AE  AA  ++++
Sbjct: 219 KESSAFGKSHKQAETNAARVLIEK 242


>gi|313157061|gb|EFR56491.1| ribonuclease III [Alistipes sp. HGB5]
          Length = 232

 Score = 65.9 bits (159), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 98/218 (44%), Gaps = 21/218 (9%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           G+   N  L + AL H S S   ++    + ERLEFLGD ++  + S  LF  +    EG
Sbjct: 3   GFIPNNIELYKLALIHKSASLVLEDGRAINNERLEFLGDAVIEAVTSDYLFIEYPDRDEG 62

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
            L+   + +VS ++ + +A  + L     V S+    V      I  D  E++I A+YLD
Sbjct: 63  FLTQLRSKIVSRQSLNVLAVNIGLDR--HVISNGSTSVTQ--KHIYGDAFEAMIGAVYLD 118

Query: 130 GGIEVAGTFVDK--YWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
            G E     +    Y++  +L    +   D K+ L EW          +K+ FR+G D +
Sbjct: 119 QGYEFVNRLLINRIYFRHLSLDELTESETDFKSRLIEWCQKN-----RHKIAFRTGYDKE 173

Query: 187 -----PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
                P F   V + G+    G   SK+ AEQ AA  V
Sbjct: 174 YSANHPVFYSTVLVDGMEVGHGSGDSKKEAEQHAAFSV 211


>gi|295132160|ref|YP_003582836.1| ribonuclease III [Zunongwangia profunda SM-A87]
 gi|294980175|gb|ADF50640.1| putative ribonuclease III [Zunongwangia profunda SM-A87]
          Length = 197

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 61/101 (60%), Gaps = 4/101 (3%)

Query: 39  SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
           +YERLEFLGD +LG +I++ L+       EG L+   + +VS +  +++ ++L+L  F++
Sbjct: 10  NYERLEFLGDAMLGSVIASHLYQEVPEGDEGYLTKMRSKIVSRKHLNELGKDLNLIRFVK 69

Query: 99  VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
             S++  D   F  +I  ++ E+L+ A+YLD G +    F+
Sbjct: 70  --SNIPND--QFGVNIHGNIFEALVGAIYLDRGYKYCNRFI 106


>gi|326330626|ref|ZP_08196930.1| ribonuclease III [Nocardioidaceae bacterium Broad-1]
 gi|325951467|gb|EGD43503.1| ribonuclease III [Nocardioidaceae bacterium Broad-1]
          Length = 183

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 78/162 (48%), Gaps = 3/162 (1%)

Query: 50  ILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS 109
           +LG++++  L+       EG+L+    ++V+A   ++V + + L   I++          
Sbjct: 1   MLGVVVTETLYRTHPDLPEGKLAKLRAAVVNARALAEVGQAIGLGQHIKLGRGEEATGGR 60

Query: 110 FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHA 167
              SI +D VE++I A++L GGIEV+   V + +     K+       D KT LQE A  
Sbjct: 61  EKASIVSDTVEAVIGAVHLSGGIEVSTVLVHRLFDPLIEKASDLGAGLDWKTSLQELAAE 120

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           +    PEY +T   GPDH   FT  V +       G+  SK+
Sbjct: 121 RALGVPEYVIT-DEGPDHMKTFTAKVRVGDQLYGNGVGRSKK 161


>gi|154509007|ref|ZP_02044649.1| hypothetical protein ACTODO_01524 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798641|gb|EDN81061.1| hypothetical protein ACTODO_01524 [Actinomyces odontolyticus ATCC
           17982]
          Length = 240

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 95/208 (45%), Gaps = 9/208 (4%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL+ AL H S ++      + ERLEFLGD +L ++I+  L+  +    E +LS    + V
Sbjct: 30  LLQLALVHRSYANEAGGIANNERLEFLGDSVLSIVIAQKLYEQYPDVAESDLSRMRAATV 89

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
           S +  +  AR + L  F+ +             SI +D  E+LI A YL  G+E A   +
Sbjct: 90  SQQPLAAAARRIGLGDFVFLGKGESMHGGRDKDSILSDTFEALIGATYLTSGLEEARRVI 149

Query: 140 DK---YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
            +   +    A   G+  +D KT L E++ A       Y+V    GPDH   FT    +S
Sbjct: 150 LERLSFLLVDAPSRGQ-HQDWKTILIEYSQAHGLGEVSYEVEG-EGPDHQRVFTARAFVS 207

Query: 197 GLAP--AQGMDCSKRAAEQVAAAEVLKR 222
                   G   SK+ AE  AA + + R
Sbjct: 208 ERPDPIGSGQASSKKHAENAAAQDAMSR 235


>gi|224141703|ref|XP_002324204.1| dicer-like protein [Populus trichocarpa]
 gi|222865638|gb|EEF02769.1| dicer-like protein [Populus trichocarpa]
          Length = 1492

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 76/145 (52%), Gaps = 14/145 (9%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
            +LE ++GY F  + +L++A+TH+SI        Y+RLEFLGD +L LLI+  L+      
Sbjct: 1124 SLESKLGYTFGVKFVLQEAMTHASIQEQGVTYCYQRLEFLGDSVLDLLITWHLYQSHTDV 1183

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLAS-FIRVSSDLRKDVCSFMTSIQ---------- 115
              GEL+   ++ V+ +  +QVA + +L +  +  S+ L+  +  ++ S            
Sbjct: 1184 DPGELTDLRSASVNNDNFAQVAVKQNLYTHLLHCSTLLQSQITEYVNSFHESDQGTKAPK 1243

Query: 116  --ADVVESLIAALYLDGGIEVAGTF 138
               D++ES+  AL +D    + G +
Sbjct: 1244 ALGDLIESIAGALLIDTKFNLDGVW 1268



 Score = 35.8 bits (81), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 2/77 (2%)

Query: 21   SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
            SL+ +A+T      S+  S ERLE LGD +L   +S  LF  + +  EG+LS   +  V 
Sbjct: 927  SLILEAITTLRCCESF--SMERLELLGDSVLKYAVSCHLFLKYPNKHEGQLSSWRSGAVC 984

Query: 81   AETCSQVARELDLASFI 97
              T  ++  +  +  +I
Sbjct: 985  NSTLHKLGTDCKVQGYI 1001


>gi|227432061|ref|ZP_03914075.1| dsRNA-specific ribonuclease [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227352178|gb|EEJ42390.1| dsRNA-specific ribonuclease [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 236

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 87/177 (49%), Gaps = 7/177 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNH 62
           S + K+   +F + SLL +ALT  +  + + +     Y+RLEFLGD ++ ++++  LF  
Sbjct: 8   SYILKKFNVSFNDESLLTEALTQRNYLNEHPDEKGRDYQRLEFLGDSVMQMIVAEYLFKR 67

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +    EG+L+    ++V   + +  +R + L   IR+             S+  D+ E+ 
Sbjct: 68  YPDWHEGQLTEMRIAMVQTRSFAHFSRMVHLNEGIRLGKGEEMSGARDRDSLLEDIWEAF 127

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177
           I ALYLD G +V   F+++     A+ +  F    D K+ LQE    K  V  +Y+ 
Sbjct: 128 IGALYLDQGADVVRQFLNQTLFA-AIDTDFFDHFIDFKSRLQERLQTKGSVDIDYQT 183


>gi|123969345|ref|YP_001010203.1| putative ribonuclease III [Prochlorococcus marinus str. AS9601]
 gi|123199455|gb|ABM71096.1| putative ribonuclease III [Prochlorococcus marinus str. AS9601]
          Length = 249

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 95/205 (46%), Gaps = 9/205 (4%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
             +A  HSS       +YE+LEF GD +L L  S  +   +     GE S     +VS E
Sbjct: 42  FNQAFIHSSEDKII--NYEKLEFFGDAVLRLAASNFIEKKYPQMSVGERSELRAQIVSDE 99

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY-LDGGIEVAGTFVDK 141
             +++  ++D+   I        D  S   +I  +  E+LI A+Y     I+    ++D 
Sbjct: 100 WLTKLGEKIDIEKLIIKGPKAIGDENS-KNTIICEATEALIGAIYKCFSSIKEVNLWLDD 158

Query: 142 YWKQRA---LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISG 197
            W++ +   LKS  ++  +KT LQEW  +K    P YK+   S  + DP RF   + I G
Sbjct: 159 IWEEDSEIFLKS-PYKFKSKTVLQEWCQSKGFDLPVYKIIEVSKKNGDPERFYCNIFIEG 217

Query: 198 LAPAQGMDCSKRAAEQVAAAEVLKR 222
           L  +     S + AE  AA  ++++
Sbjct: 218 LKESSAFGKSHKQAETNAARVLIEK 242


>gi|86143647|ref|ZP_01062023.1| putative ribonuclease III [Leeuwenhoekiella blandensis MED217]
 gi|85829690|gb|EAQ48152.1| putative ribonuclease III [Leeuwenhoekiella blandensis MED217]
          Length = 248

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 80/140 (57%), Gaps = 8/140 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           + T++K IG+   N +  E+A TH S++   ++    +YERLEFLGD +LG +I+  LF+
Sbjct: 19  FVTVKKIIGFKPINITHYEEAFTHRSMALQDKKGNAFNYERLEFLGDAMLGAVIAAYLFD 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
                 EG L+   + +VS E  +++ R+L L     V S + K+  +F  +I  ++ E+
Sbjct: 79  EVGKGDEGYLTKMRSKVVSREHLNELGRDLGLLG--LVKSAIPKE--NFGANIHGNLFEA 134

Query: 122 LIAALYLDGGIEVAGTFVDK 141
           L+ A+Y D G   A  F++K
Sbjct: 135 LVGAIYQDRGYRYARKFINK 154


>gi|332005448|gb|AED92831.1| dicer-like protein 4 [Arabidopsis thaliana]
          Length = 1688

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 71/146 (48%), Gaps = 19/146 (13%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            TLE ++ Y F ++ LL +A  H S +      Y+RLEFLGD +L  L+++  F  F   K
Sbjct: 1280 TLENQLDYKFLHKGLLVQAFIHPSYNRHGGGCYQRLEFLGDAVLDYLMTSYFFTVFPKLK 1339

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIRVSS----DLRKDVCSFMTS---------- 113
             G+L+   +  V+ E  + VA    L  F+   S    ++ +D  +F+ S          
Sbjct: 1340 PGQLTDLRSLSVNNEALANVAVSFSLKRFLFCESIYLHEVIEDYTNFLASSPLASGQSEG 1399

Query: 114  -----IQADVVESLIAALYLDGGIEV 134
                 +  D+VES + AL+LD G  +
Sbjct: 1400 PRCPKVLGDLVESCLGALFLDCGFNL 1425



 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 61/143 (42%), Gaps = 42/143 (29%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI- 97
            S ERLE LGD  L   +S  LF H DS  EGEL+ R +++V+     ++A + +L  +I 
Sbjct: 1103 SLERLEVLGDAFLKFAVSRHLFLHHDSLDEGELTRRRSNVVNNSNLCRLAIKKNLQVYIR 1162

Query: 98   ----------------RVSSD---------LRKDV-----------CS-----FMTSIQA 116
                            RV+ D         L +D+           CS           A
Sbjct: 1163 DQALDPTQFFAFGHPCRVTCDEVASKEVHSLNRDLGILESNTGEIRCSKGHHWLYKKTIA 1222

Query: 117  DVVESLIAALYLDGGIEVAGTFV 139
            DVVE+L+ A  +D G + A  F+
Sbjct: 1223 DVVEALVGAFLVDSGFKGAVKFL 1245


>gi|145358264|ref|NP_197532.3| DCL4 (DICER-LIKE 4); RNA binding / protein binding / ribonuclease III
            [Arabidopsis thaliana]
 gi|322510021|sp|P84634|DCL4_ARATH RecName: Full=Dicer-like protein 4
 gi|73672051|gb|AAZ80387.1| dicer-like 4 [Arabidopsis thaliana]
 gi|332005447|gb|AED92830.1| dicer-like protein 4 [Arabidopsis thaliana]
          Length = 1702

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 71/146 (48%), Gaps = 19/146 (13%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            TLE ++ Y F ++ LL +A  H S +      Y+RLEFLGD +L  L+++  F  F   K
Sbjct: 1294 TLENQLDYKFLHKGLLVQAFIHPSYNRHGGGCYQRLEFLGDAVLDYLMTSYFFTVFPKLK 1353

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIRVSS----DLRKDVCSFMTS---------- 113
             G+L+   +  V+ E  + VA    L  F+   S    ++ +D  +F+ S          
Sbjct: 1354 PGQLTDLRSLSVNNEALANVAVSFSLKRFLFCESIYLHEVIEDYTNFLASSPLASGQSEG 1413

Query: 114  -----IQADVVESLIAALYLDGGIEV 134
                 +  D+VES + AL+LD G  +
Sbjct: 1414 PRCPKVLGDLVESCLGALFLDCGFNL 1439



 Score = 44.3 bits (103), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 61/143 (42%), Gaps = 42/143 (29%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI- 97
            S ERLE LGD  L   +S  LF H DS  EGEL+ R +++V+     ++A + +L  +I 
Sbjct: 1117 SLERLEVLGDAFLKFAVSRHLFLHHDSLDEGELTRRRSNVVNNSNLCRLAIKKNLQVYIR 1176

Query: 98   ----------------RVSSD---------LRKDV-----------CS-----FMTSIQA 116
                            RV+ D         L +D+           CS           A
Sbjct: 1177 DQALDPTQFFAFGHPCRVTCDEVASKEVHSLNRDLGILESNTGEIRCSKGHHWLYKKTIA 1236

Query: 117  DVVESLIAALYLDGGIEVAGTFV 139
            DVVE+L+ A  +D G + A  F+
Sbjct: 1237 DVVEALVGAFLVDSGFKGAVKFL 1259


>gi|328905041|gb|AEB54796.1| dicer 2 [Litopenaeus vannamei]
          Length = 1502

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 106/244 (43%), Gaps = 36/244 (14%)

Query: 9    LEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            LEK+IGY F +RS + +A+THSS +++   + Y+RLEFLGD +L  L++  +F  F    
Sbjct: 1242 LEKKIGYTFRDRSFIVQAVTHSSYVNNQVTDCYQRLEFLGDAVLDYLVTCHIFCRFTDYS 1301

Query: 68   EGELSVRFNSLVSAETCSQVARELDL-ASFIRVSSDLRKDVCSFMTSIQ----------- 115
             G+LS   +  V  +T  + A +  L    + ++  L   +  F++ +            
Sbjct: 1302 PGQLSDLRSYFVKNDTLGRAAAKGKLHQHLLHLNPKLEASIDKFLSILHQDPLGEELNTE 1361

Query: 116  ---------------ADVVESLIAALYLDGG--IEVAGTFVDKYWKQRALKSGKFRRDAK 158
                            D+VE++I A+YLD    ++VA   +     +R L          
Sbjct: 1362 DDVQDCEDVEIPKALGDMVEAIIGAVYLDSNRSLKVAWQVI-----ERILGDLLNTSIQT 1416

Query: 159  TELQEWAHAKFGVTPEYKVTFRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
             +L         V  E +V F  G D    + T VV++ G         + R A++  AA
Sbjct: 1417 IQLNPIRQLLEEVPGEKQVEFVKGEDDGSEKSTYVVKVKGFGTFTASGKNYRVAKKKVAA 1476

Query: 218  EVLK 221
              LK
Sbjct: 1477 IALK 1480


>gi|16331355|ref|NP_442083.1| ribonuclease III [Synechocystis sp. PCC 6803]
 gi|2500555|sp|Q55637|RNC2_SYNY3 RecName: Full=Ribonuclease 3 2; AltName: Full=Ribonuclease III 2;
           Short=RNase III 2
 gi|1001526|dbj|BAA10153.1| ribonuclease III [Synechocystis sp. PCC 6803]
          Length = 244

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 82/164 (50%), Gaps = 14/164 (8%)

Query: 21  SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
           +L++ ALTH+S   S +++Y++LEF+GD ++ L  + +L  H+     GE+S     LVS
Sbjct: 29  NLVDLALTHAS--QSPEQNYQQLEFVGDAVVRLASAEVLMKHYPQTSVGEMSALRAILVS 86

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140
             T +       L  F+ ++  +  D  +   S+ AD  E+L+ ALYL     V    + 
Sbjct: 87  DRTLAGWGELYGLDRFLWITPAVLAD-KNGRVSLMADSFEALLGALYL----SVGDLSLI 141

Query: 141 KYWKQRAL--KSGKFRRDA-----KTELQEWAHAKFGVTPEYKV 177
           + W    L  K+ + R+D      K  LQ W  A +   PEY+V
Sbjct: 142 RPWLSEHLLAKATEIRQDPALHNYKEALQAWTQAHYKCLPEYRV 185


>gi|62320294|dbj|BAD94606.1| CAF protein [Arabidopsis thaliana]
          Length = 690

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 23/154 (14%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           + ++ +  LE+ + Y F  + LL +A+TH+S   S    Y+RLEF+GD +L  LI+  LF
Sbjct: 335 LKSIDFVRLERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 394

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ---- 115
             + S   G L+    + V+ E  ++VA +  L  ++R  SS L K +  F+  +Q    
Sbjct: 395 FTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESS 454

Query: 116 ------------------ADVVESLIAALYLDGG 131
                              D+VES+  A++LD G
Sbjct: 455 KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSG 488



 Score = 42.0 bits (97), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 3/97 (3%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           S L    L+  I Y      +LE ALT +S   ++   YER E LGD  L  ++S  LF 
Sbjct: 120 SMLLAVQLKNLISYPIPTSKILE-ALTAASCQETF--CYERAELLGDAYLKWVVSRFLFL 176

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
            +    EG+L+     +VS     Q A    L S+I+
Sbjct: 177 KYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 213


>gi|52549755|gb|AAU83604.1| similar to ribonuclease III [uncultured archaeon GZfos32E4]
          Length = 264

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 96/197 (48%), Gaps = 18/197 (9%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE  IG+ F N +LLE+A+T  S S  H    +Y+ LEFLGDR+L L+++  LF    SA
Sbjct: 19  LEASIGHQFKNIALLEEAITTGSYSNEHPGSSNYQTLEFLGDRVLSLILAEELFKLSKSA 78

Query: 67  K--EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+++     L +    ++    + L ++IR +++ R+D+      + ADV E++  
Sbjct: 79  SLDEGKMTFLKAELENNLRLAEYGENIGLRNYIR-ANEKREDI---RPKVIADVFEAICG 134

Query: 125 ALYLDGGIEVAGTFVDKYWK--------QRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           A+YLD    +    V K           ++ + SGK     + + +     K    PE K
Sbjct: 135 AIYLDTEESIRIKEVKKILLKFEILERIKKEMSSGKGFLPIRNQFENKFREKHRCNPEIK 194

Query: 177 VTFRS--GPDHDPRFTV 191
              +S  G +H  R+ +
Sbjct: 195 FEQKSTLGEEHPTRWRI 211


>gi|332189100|gb|AEE27221.1| endoribonuclease Dicer [Arabidopsis thaliana]
          Length = 1910

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 23/154 (14%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            + ++ +  LE+ + Y F  + LL +A+TH+S   S    Y+RLEF+GD +L  LI+  LF
Sbjct: 1555 LKSIDFVGLERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 1614

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ---- 115
              + S   G L+    + V+ E  ++VA +  L  ++R  SS L K +  F+  +Q    
Sbjct: 1615 FTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESS 1674

Query: 116  ------------------ADVVESLIAALYLDGG 131
                               D+VES+  A++LD G
Sbjct: 1675 KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSG 1708



 Score = 42.0 bits (97), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 3/97 (3%)

Query: 2    SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
            S L    L+  I Y      +LE ALT +S   ++   YER E LGD  L  ++S  LF 
Sbjct: 1340 SMLLAVQLKNLISYPIPTSKILE-ALTAASCQETF--CYERAELLGDAYLKWVVSRFLFL 1396

Query: 62   HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
             +    EG+L+     +VS     Q A    L S+I+
Sbjct: 1397 KYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 1433


>gi|15223286|ref|NP_171612.1| DCL1 (DICER-LIKE 1); ATP-dependent helicase/ double-stranded RNA
            binding / protein binding / ribonuclease III [Arabidopsis
            thaliana]
 gi|34922211|sp|Q9SP32|DCL1_ARATH RecName: Full=Endoribonuclease Dicer homolog 1; AltName:
            Full=Dicer-like protein 1; Short=AtDCL1; AltName:
            Full=Protein ABNORMAL SUSPENSOR 1; AltName: Full=Protein
            CARPEL FACTORY; AltName: Full=Protein SHORT INTEGUMENTS
            1; AltName: Full=Protein SUSPENSOR 1
 gi|11559645|gb|AAG38019.1|AF292940_1 short integuments 1 [Arabidopsis thaliana]
 gi|11559647|gb|AAG38020.1|AF292941_1 short integuments 1 [Arabidopsis thaliana]
 gi|332189099|gb|AEE27220.1| endoribonuclease Dicer [Arabidopsis thaliana]
          Length = 1909

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 23/154 (14%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            + ++ +  LE+ + Y F  + LL +A+TH+S   S    Y+RLEF+GD +L  LI+  LF
Sbjct: 1554 LKSIDFVGLERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 1613

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ---- 115
              + S   G L+    + V+ E  ++VA +  L  ++R  SS L K +  F+  +Q    
Sbjct: 1614 FTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESS 1673

Query: 116  ------------------ADVVESLIAALYLDGG 131
                               D+VES+  A++LD G
Sbjct: 1674 KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSG 1707



 Score = 41.6 bits (96), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 3/97 (3%)

Query: 2    SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
            S L    L+  I Y      +LE ALT +S   ++   YER E LGD  L  ++S  LF 
Sbjct: 1339 SMLLAVQLKNLISYPIPTSKILE-ALTAASCQETF--CYERAELLGDAYLKWVVSRFLFL 1395

Query: 62   HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
             +    EG+L+     +VS     Q A    L S+I+
Sbjct: 1396 KYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 1432


>gi|6102610|gb|AAF03534.1|AF187317_1 CAF protein [Arabidopsis thaliana]
          Length = 1909

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 23/154 (14%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            + ++ +  LE+ + Y F  + LL +A+TH+S   S    Y+RLEF+GD +L  LI+  LF
Sbjct: 1554 LKSIDFVGLERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 1613

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ---- 115
              + S   G L+    + V+ E  ++VA +  L  ++R  SS L K +  F+  +Q    
Sbjct: 1614 FTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESS 1673

Query: 116  ------------------ADVVESLIAALYLDGG 131
                               D+VES+  A++LD G
Sbjct: 1674 KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSG 1707



 Score = 41.6 bits (96), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 3/97 (3%)

Query: 2    SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
            S L    L+  I Y      +LE ALT +S   ++   YER E LGD  L  ++S  LF 
Sbjct: 1339 SMLLAVQLKNLISYPIPTSKILE-ALTAASCQETF--CYERAELLGDAYLKWVVSRFLFL 1395

Query: 62   HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
             +    EG+L+     +VS     Q A    L S+I+
Sbjct: 1396 KYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 1432


>gi|218508317|ref|ZP_03506195.1| ribonuclease III [Rhizobium etli Brasil 5]
          Length = 75

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 44/66 (66%)

Query: 1  MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
          +SA   + LE  IG+ FA +  L++ALTH+S       +YERLEFLGDR+LGL I+ LLF
Sbjct: 7  LSAADRAKLENLIGHDFAEKERLDRALTHASARTEKGSNYERLEFLGDRVLGLCIAELLF 66

Query: 61 NHFDSA 66
            F +A
Sbjct: 67 RTFGTA 72


>gi|125542181|gb|EAY88320.1| hypothetical protein OsI_09779 [Oryza sativa Indica Group]
          Length = 1883

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 76/158 (48%), Gaps = 23/158 (14%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            M ++ + TL+  +G  F N+ LL +A+TH+S   S    Y+RLEF+GD +L  LI+  LF
Sbjct: 1533 MRSINFDTLKGVLGIEFQNKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 1592

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ---- 115
              +     G L+    + V+ E  ++VA +  L   +R  SS L   +  F+  +Q    
Sbjct: 1593 FTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQIREFVKDVQEELL 1652

Query: 116  ------------------ADVVESLIAALYLDGGIEVA 135
                               D+VES+  A++LD G + +
Sbjct: 1653 KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGYDTS 1690



 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 3/97 (3%)

Query: 2    SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
            S L    L+  I Y      +LE ALT +S   ++   YER E LGD  L  ++S  LF 
Sbjct: 1317 SMLLAVQLKDIIDYPVPATKILE-ALTAASCQETF--CYERAELLGDAYLKWVVSRFLFL 1373

Query: 62   HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
             +    EG+L+     +VS     Q A    L S+I+
Sbjct: 1374 KYPQKHEGQLTRMRQQMVSNMVLYQYALNKTLQSYIQ 1410


>gi|126179439|ref|YP_001047404.1| ribonuclease III [Methanoculleus marisnigri JR1]
 gi|125862233|gb|ABN57422.1| RNAse III [Methanoculleus marisnigri JR1]
          Length = 154

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 74/142 (52%), Gaps = 7/142 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ------ESYERLEFLGDRILGLLISTLLFNH 62
           LE+RI Y+F  + LL++AL H S S+  +      E  + L  LGD +L  ++  LL   
Sbjct: 5   LEERINYSFKQKDLLQRALLHRSRSNEERQKQKICEDQDALRTLGDAVLKTILCDLLMRS 64

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
               K GE++++ +++      +++ R  DL   I V    R    +   ++ A+ +E++
Sbjct: 65  GYETK-GEITIKKSTIERRPFLAELGRRFDLQDKILVGEGARMQKHNEEPNVIAETLEAI 123

Query: 123 IAALYLDGGIEVAGTFVDKYWK 144
           I A+YLDGG E A   V  +++
Sbjct: 124 IGAMYLDGGYESAKKAVSGWYE 145


>gi|125584735|gb|EAZ25399.1| hypothetical protein OsJ_09217 [Oryza sativa Japonica Group]
          Length = 1883

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 76/158 (48%), Gaps = 23/158 (14%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            M ++ + TL+  +G  F N+ LL +A+TH+S   S    Y+RLEF+GD +L  LI+  LF
Sbjct: 1533 MRSINFDTLKGVLGIEFQNKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 1592

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ---- 115
              +     G L+    + V+ E  ++VA +  L   +R  SS L   +  F+  +Q    
Sbjct: 1593 FTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQIREFVKDVQEELL 1652

Query: 116  ------------------ADVVESLIAALYLDGGIEVA 135
                               D+VES+  A++LD G + +
Sbjct: 1653 KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGYDTS 1690



 Score = 39.7 bits (91), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 44/97 (45%), Gaps = 3/97 (3%)

Query: 2    SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
            S L    L+  I Y      +LE ALT +S   +    YER E LGD  L  ++S  LF 
Sbjct: 1317 SMLLAVQLKDIIDYPVPATKILE-ALTAASCQETL--CYERAELLGDAYLKWVVSRFLFL 1373

Query: 62   HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
             +    EG+L+     +VS     Q A    L S+I+
Sbjct: 1374 KYPQKHEGQLTRMRQQMVSNMVLYQYALNKTLQSYIQ 1410


>gi|75330224|sp|Q8LMR2|DCL1_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 1; AltName:
            Full=Dicer-like protein 1; Short=OsDCL1
 gi|21426125|gb|AAM52322.1|AC105363_11 Putative CAF protein [Oryza sativa Japonica Group]
 gi|108705906|gb|ABF93701.1| DEAD/DEAH box helicase carpel factory, putative, expressed [Oryza
            sativa Japonica Group]
          Length = 1883

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 76/158 (48%), Gaps = 23/158 (14%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            M ++ + TL+  +G  F N+ LL +A+TH+S   S    Y+RLEF+GD +L  LI+  LF
Sbjct: 1533 MRSINFDTLKGVLGIEFQNKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 1592

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ---- 115
              +     G L+    + V+ E  ++VA +  L   +R  SS L   +  F+  +Q    
Sbjct: 1593 FTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQIREFVKDVQEELL 1652

Query: 116  ------------------ADVVESLIAALYLDGGIEVA 135
                               D+VES+  A++LD G + +
Sbjct: 1653 KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGYDTS 1690



 Score = 39.7 bits (91), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 44/97 (45%), Gaps = 3/97 (3%)

Query: 2    SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
            S L    L+  I Y      +LE ALT +S   +    YER E LGD  L  ++S  LF 
Sbjct: 1317 SMLLAVQLKDIIDYPVPATKILE-ALTAASCQETL--CYERAELLGDAYLKWVVSRFLFL 1373

Query: 62   HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
             +    EG+L+     +VS     Q A    L S+I+
Sbjct: 1374 KYPQKHEGQLTRMRQQMVSNMVLYQYALNKTLQSYIQ 1410


>gi|299754132|ref|XP_002911949.1| type III restriction enzyme [Coprinopsis cinerea okayama7#130]
 gi|298410618|gb|EFI28455.1| type III restriction enzyme [Coprinopsis cinerea okayama7#130]
          Length = 1457

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 105/220 (47%), Gaps = 36/220 (16%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            + TL++R+GY F + S+L +A+TH S + +   SY+RLEFLGD IL L++   L+  F  
Sbjct: 1121 FDTLQERLGYTFHSNSILVEAVTHPSFA-TDGPSYQRLEFLGDAILDLVVVHYLYEKFPE 1179

Query: 66   AKEGELSVRFNSLVSAETCSQVA-RELDLASFIRVSS-DLRKDVCSFMTSIQ-------- 115
            A   +LS+    ++ A T + +A +EL +   + +++  L + + +++   +        
Sbjct: 1180 ANSHQLSLLRAKVICAPTLAYLAIKELGVHKILLINNMGLYRAIEAYVPVFEDITDEEIA 1239

Query: 116  ------------ADVVESLIAALYLDGGIEVAGT------FVDKYWKQRALKSGKFRRDA 157
                        +DV ESL+ A+ +D G     T       + K   Q +L   K   D 
Sbjct: 1240 RSYYKFDPPKAISDVFESLVGAVLVDSGYNYDKTSAVVLDIMSKVLDQLSLDMAK---DP 1296

Query: 158  KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197
             + L EW  A+ G     +++F      +    VV+E+ G
Sbjct: 1297 VSLLLEWV-AQHGCR---EISFSKNRKFNYDAGVVLEVHG 1332



 Score = 43.9 bits (102), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 19/115 (16%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
            S +RLE LGD +L L  +  LFN + +  EG+L+    + VS +   Q A E+ L  +I 
Sbjct: 973  SNQRLETLGDAVLQLCTTVHLFNQYPNRHEGQLTTLRRATVSNKFLLQRALEMGLEEYIT 1032

Query: 99   V----------------SSDLRKDVCSFMT--SIQADVVESLIAALYLDGGIEVA 135
            V                 +   + V + +   S+Q D +E+L+ A +L GGI +A
Sbjct: 1033 VEIASVARWRYILGEDADTAPPRSVRTLVPRRSLQ-DCMEALLGASFLQGGIPMA 1086


>gi|302815180|ref|XP_002989272.1| hypothetical protein SELMODRAFT_129431 [Selaginella moellendorffii]
 gi|300143015|gb|EFJ09710.1| hypothetical protein SELMODRAFT_129431 [Selaginella moellendorffii]
          Length = 524

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 28/167 (16%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLL 59
           ++++ +  LE  +GY+F +R+LL +ALTHSS    S    YERLEF+GD +L  L++  +
Sbjct: 190 LNSIDFEGLENTLGYSFGSRNLLAQALTHSSSRQASMVPIYERLEFIGDAVLDHLLTRHI 249

Query: 60  FNHFDSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF-------- 110
           +  +     G L+ +R  +L S      + +    A  +  S+D    + ++        
Sbjct: 250 YFSYKDLHPGRLTDLRCAALNSESFARAMVKHKLHAHILHESNDFHSQIKTYAKHALNME 309

Query: 111 -------------MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
                           +  DV +SL+ ALY+D G+      +D+ WK
Sbjct: 310 ENAIYSYGFGAVKAPKVLGDVFQSLVGALYIDSGLN-----LDQVWK 351



 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 7/127 (5%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L K I Y      +LE ALT ++    Y   YER+E LGD  L   +ST L+  F    E
Sbjct: 31  LRKAINYNIPASKILE-ALTAANCHEPY--CYERIELLGDAYLKWAVSTRLYLKFSDFPE 87

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDL----RKDVCSFMTSIQADVVESLIA 124
           GEL++    ++S      +A E  L +++R++  +      D+    + + A+VVE+LI 
Sbjct: 88  GELTITRGKIISNSALHYLALEKGLETYVRINPFVPGREPTDLQELSSKVLANVVEALIG 147

Query: 125 ALYLDGG 131
           A Y+  G
Sbjct: 148 AYYVHHG 154


>gi|297834980|ref|XP_002885372.1| hypothetical protein ARALYDRAFT_479566 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297331212|gb|EFH61631.1| hypothetical protein ARALYDRAFT_479566 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 391

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 77/151 (50%), Gaps = 22/151 (14%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LEK + Y F N+SLL++A+TH+S +     SYERLEF+GD  +GL IS  L+  + S + 
Sbjct: 63  LEKILNYKFKNKSLLKEAITHTSCTDF--PSYERLEFVGDSAIGLAISNYLYLTYPSLEP 120

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSD-LRKDVCSF----------------- 110
            +LS+   + VS E  ++V     L  F+R ++  L + V  F                 
Sbjct: 121 HQLSLLRAANVSTEKLARVTLNHGLYQFLRRNAPSLDEKVKEFSDAVGKEDDFSVAYGGL 180

Query: 111 --MTSIQADVVESLIAALYLDGGIEVAGTFV 139
                + AD+ ES+  A+Y+D   ++   +V
Sbjct: 181 VKAPKVLADLFESVAGAVYVDVNFDLQRLWV 211


>gi|123967024|ref|YP_001012105.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9515]
 gi|123201390|gb|ABM72998.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9515]
          Length = 249

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 98/205 (47%), Gaps = 9/205 (4%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
             +ALTHSS       +YE+LEF GD +L L  S  +   + +   G  S   + LVS E
Sbjct: 42  FNEALTHSSADKIV--NYEKLEFFGDAVLRLSASDFIERKYKNMSVGNRSELRSQLVSDE 99

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY-LDGGIEVAGTFVDK 141
             +++ +++ +   I        D  S   +I A+  E+LI A+Y     I     ++D 
Sbjct: 100 WLTELGKKIFIEKVIVKGPKAIGDENS-KDTIIAETSEALIGAIYKCFNSIHEVNIWLDN 158

Query: 142 YWKQRA---LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISG 197
           +W++ A   LK+   + +AK+ LQEW        P YK+   S    DP RF+  + ++G
Sbjct: 159 FWEKDAELYLKAPH-KYNAKSALQEWCQKHGFDLPIYKIYEVSSSHGDPKRFSCDIYLNG 217

Query: 198 LAPAQGMDCSKRAAEQVAAAEVLKR 222
              A     S + AE+ AA  ++++
Sbjct: 218 SKEASSFGNSHKKAEKNAATILIEK 242


>gi|224068194|ref|XP_002302679.1| dicer-like protein [Populus trichocarpa]
 gi|222844405|gb|EEE81952.1| dicer-like protein [Populus trichocarpa]
          Length = 1817

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 111/245 (45%), Gaps = 32/245 (13%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            + ++ + TLE  +   F +R LL +A+TH+S   S    Y+RLEF+GD +L  LI+  LF
Sbjct: 1518 LRSVDFDTLEGALDIKFNDRGLLIEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 1577

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ---- 115
              + +   G L+    + V+ E  ++VA +  L   +R  SS L K +  F+  +Q    
Sbjct: 1578 FTYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALEKQIRDFVREVQDELL 1637

Query: 116  ------------------ADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRD 156
                               D+VES+  A++LD G + A  + V +      +        
Sbjct: 1638 KPVFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTAVVWKVFQPLLHPMVTPETLPMH 1697

Query: 157  AKTELQEWAHAKF-GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
               ELQE    +  G+  EYK T RSG       TV V I G+      +  K+ A+++A
Sbjct: 1698 PVRELQERCQQQAEGL--EYKAT-RSG----NLATVEVFIDGVQVGVAQNPQKKMAQKLA 1750

Query: 216  AAEVL 220
            A   L
Sbjct: 1751 ARNAL 1755



 Score = 41.2 bits (95), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 3/90 (3%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            L+  I Y      +LE ALT +S   ++   YER E LGD  L  ++S  LF  +    E
Sbjct: 1306 LKDIINYPVPASKILE-ALTAASCQETF--CYERAELLGDAYLKWVVSRFLFLKYPQKHE 1362

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIR 98
            G+L+     +VS     Q A    L S+I+
Sbjct: 1363 GQLTRMRQQMVSNMVLYQYALNKGLQSYIQ 1392


>gi|242090101|ref|XP_002440883.1| hypothetical protein SORBIDRAFT_09g013160 [Sorghum bicolor]
 gi|241946168|gb|EES19313.1| hypothetical protein SORBIDRAFT_09g013160 [Sorghum bicolor]
          Length = 377

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 78/160 (48%), Gaps = 30/160 (18%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +E+ + Y F +R+LLE+ALTH S S     SY+RLEF+GD  LGL  S  L+    +   
Sbjct: 45  VERLLRYQFCDRALLEEALTHQSFSDG-AFSYQRLEFVGDAALGLAFSNFLYLTNPTLGP 103

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSFMTSIQ------------ 115
           G LS    + +S E  ++VA   DL   + R  + L   V  F+ S++            
Sbjct: 104 GALSTLRAANISTEKLARVAVRHDLYPLLRRKCARLDLLVGQFIESVKQEVMHDLATAPY 163

Query: 116 -----------ADVVESLIAALYLDGGIEVAGTFVDKYWK 144
                      AD+VE++ AA+Y+D   +     ++K WK
Sbjct: 164 GGSVVKAPKVLADIVEAIAAAVYVDCKFD-----LEKLWK 198


>gi|325954697|ref|YP_004238357.1| ribonuclease 3 [Weeksella virosa DSM 16922]
 gi|323437315|gb|ADX67779.1| Ribonuclease 3 [Weeksella virosa DSM 16922]
          Length = 256

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 67/123 (54%), Gaps = 8/123 (6%)

Query: 24  EKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           E+A TH S      +    ++ERLEFLGD +LG   +  L+N     +EG L+   + +V
Sbjct: 42  EEAFTHRSAQRKDDKGQNVNFERLEFLGDALLGASAAVHLYNSAPDRQEGYLTKMRSKIV 101

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
           S    ++V+R+L L  F+  +++L     +    +  D++E+ + A+Y+D G+ +   F+
Sbjct: 102 SRRQLNEVSRKLHLTEFLIPANNL----ANLGEDVNGDLLEAFVGAIYVDQGLLITEKFI 157

Query: 140 DKY 142
            +Y
Sbjct: 158 TRY 160


>gi|302755618|ref|XP_002961233.1| hypothetical protein SELMODRAFT_74321 [Selaginella moellendorffii]
 gi|300172172|gb|EFJ38772.1| hypothetical protein SELMODRAFT_74321 [Selaginella moellendorffii]
          Length = 1291

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 77/147 (52%), Gaps = 22/147 (14%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            +LEK + Y F N++LL +A+TH+S   +    Y+RLEF+GD +L  L++  LF       
Sbjct: 1046 SLEKELCYTFQNKALLLEAITHASTPDTVF-CYQRLEFIGDAVLDFLVTRHLFTSHPGLS 1104

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFMTSIQ----------- 115
             G LS   ++ V+ +  ++VA +  L S++R  S++LR  + SF+  +            
Sbjct: 1105 PGLLSDLRSASVNNDCLARVAVKHRLHSYLRHGSAELRAKITSFLDVLDRDPECSVMFGF 1164

Query: 116  ---------ADVVESLIAALYLDGGIE 133
                     AD+VES+  A+ +D G +
Sbjct: 1165 KALSGPKALADIVESVAGAILVDSGFD 1191



 Score = 36.6 bits (83), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 32/60 (53%)

Query: 39  SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
           SYE LE LGD +L   ++  L+    +  EGELS R +  +   T  ++A   DL  ++R
Sbjct: 865 SYEGLELLGDSVLKYAVTRKLYLLHSTMHEGELSDRRSHAICNSTLRKLAVAQDLPMYVR 924


>gi|320093928|ref|ZP_08025763.1| ribonuclease III [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319979140|gb|EFW10648.1| ribonuclease III [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 239

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 96/207 (46%), Gaps = 9/207 (4%)

Query: 21  SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           +LL  AL H S ++      + ERLEFLGD +L ++I+  LF+ +    E +LS    + 
Sbjct: 29  ALLSLALVHRSYANEAGGIANNERLEFLGDSVLSVVIAERLFHDYPDVAESDLSRMRAAT 88

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138
           VS    +  AR + L  ++ +             SI +D  E+LI A YL  G++ A   
Sbjct: 89  VSQAPLAAAARRIGLGDYVYLGKGESLHGGRDKDSILSDTFEALIGATYLTHGLQAARRV 148

Query: 139 VDK---YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
           V +   +  + A + G   +D KT L E++         Y+V    GPDH   FT    I
Sbjct: 149 VLERLSFLLEDAQERG-HHQDWKTLLVEYSQEHGLGEVSYEVEG-EGPDHRRVFTARAFI 206

Query: 196 SGL-AP-AQGMDCSKRAAEQVAAAEVL 220
           +G+  P   G   SK+ AE  AA   +
Sbjct: 207 AGIDGPVGSGRATSKKHAENAAAQNAM 233


>gi|255565079|ref|XP_002523532.1| Ribonuclease III, putative [Ricinus communis]
 gi|223537239|gb|EEF38871.1| Ribonuclease III, putative [Ricinus communis]
          Length = 1633

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 114/246 (46%), Gaps = 39/246 (15%)

Query: 3    ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            ++  S+LE  + + F NR L+ +A  H S +      Y+RLEFLGD +L  LI++ LF+ 
Sbjct: 1204 SIDVSSLEDSLDHQFVNRGLVLQAFVHPSYNKHGGGCYQRLEFLGDAVLDYLITSYLFSV 1263

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-DLRKDVCSFMTSIQ------ 115
            +   K G L+   ++LV+    + VA +     F+   S +L + + +++  ++      
Sbjct: 1264 YPKLKPGLLTDLRSALVNNRAFAIVAVDRSFNEFLICDSGNLSEAIETYVNFVKRPAVEK 1323

Query: 116  ------------ADVVESLIAALYLDGGIEVAG------TFVDKYWKQRALKSGKFRRDA 157
                         D+VES I A++LD G ++        +F+D       +    FR   
Sbjct: 1324 DSLEGPKCPKVLGDLVESCIGAIFLDTGFDLNCIWKLMLSFLDPILNSSNVLLNPFR--- 1380

Query: 158  KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG---LAPAQGMDCSKRAAEQV 214
              EL E+  +      ++K+ F +    D  F V  +++G      A   + +K+ A ++
Sbjct: 1381 --ELHEFCESH-----KWKLQFPTL-KRDMNFLVEAKVTGKDICLDASANNSNKKEAIRI 1432

Query: 215  AAAEVL 220
            A+ +++
Sbjct: 1433 ASEQII 1438


>gi|307105017|gb|EFN53268.1| hypothetical protein CHLNCDRAFT_53967 [Chlorella variabilis]
          Length = 947

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 107/261 (40%), Gaps = 53/261 (20%)

Query: 9   LEKRIGYAFANRSLLEKALTHSS-----ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +E   G    +  L   ALTH S     +     +SYERLEFLGD +LGL   TLL    
Sbjct: 685 VEALTGCGVRDMGLYRTALTHKSALPLELRLEKLQSYERLEFLGDSVLGLCCRTLLMARC 744

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------------ 99
             + EG++S R + LVS  + ++ A  L L  ++ +                        
Sbjct: 745 PDSDEGQMSRRNSLLVSGASNARYAAFLGLDRYVLLEPRALRHAPLEASSEQPWHSSAAG 804

Query: 100 SSDLRKDVCSF--------MTSIQADVVESLIAALYLDGGIEVAGTFVDKY------WKQ 145
           S+   +  C F           + AD  E+L+ ALYLD G  VA  F  +       W+Q
Sbjct: 805 STRRSRRRCHFSAGEGAQHKPGLLADAFEALLGALYLDRGFVVARRFCMRVLEACVEWEQ 864

Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-----PRFTVVVEISGLAP 200
             L++ +   D K  L  +A A     P + V   S  ++      P +TV V   G   
Sbjct: 865 --LEAAQ---DFKALLCRYAGAHQKPQPRFSVRSTSQREYKAGLQLPWWTVEVAFGGRVV 919

Query: 201 AQGMDCSKRAAEQVAAAEVLK 221
             G    KR AEQ AA E L+
Sbjct: 920 GSGGSFDKRGAEQAAAREALE 940


>gi|6102924|emb|CAB59269.1| hypothetical protein [Homo sapiens]
          Length = 525

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 43/252 (17%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +   EK+I Y F N++ L +A TH+S  + +  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 269 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 328

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111
               G L+   ++LV+    + +A + D   + +  S              L K+    M
Sbjct: 329 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 388

Query: 112 TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149
            S                      D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 389 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 448

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 449 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 501

Query: 210 AAEQVAAAEVLK 221
            A+  AA   L+
Sbjct: 502 IAKSAAAKRALR 513


>gi|326920976|ref|XP_003206741.1| PREDICTED: endoribonuclease Dicer-like [Meleagris gallopavo]
          Length = 1921

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 103/252 (40%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y+F N++ L +A TH+S  + +  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1665 FENFEKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1724

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSF------------- 110
                G L+   ++LV+    + +A + D   + + VS +L   +  F             
Sbjct: 1725 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGM 1784

Query: 111  ------------------MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149
                              +     D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 1785 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1844

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1845 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1897

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1898 IAKSAAARRALR 1909



 Score = 40.0 bits (92), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 18   ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
             N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   + 
Sbjct: 1293 PNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1350

Query: 78   LVSAETCSQVARELDLASFIRVS 100
             VS     ++ ++  L S + VS
Sbjct: 1351 KVSNCNLYRLGKKKGLPSRMVVS 1373


>gi|302772092|ref|XP_002969464.1| hypothetical protein SELMODRAFT_91347 [Selaginella moellendorffii]
 gi|300162940|gb|EFJ29552.1| hypothetical protein SELMODRAFT_91347 [Selaginella moellendorffii]
          Length = 1255

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 79/153 (51%), Gaps = 22/153 (14%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            +LEK + Y F N++LL +A+TH+S   +    Y+RLEF+GD +L  L++  LF       
Sbjct: 1010 SLEKELCYTFQNKALLLEAITHASTPDTVF-CYQRLEFIGDAVLDFLVTRHLFTSHPGLS 1068

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFMTSIQ----------- 115
             G LS   ++ V+ +  ++VA +  L S++R  S++LR  + SF+  +            
Sbjct: 1069 PGLLSDLRSASVNNDCLARVAVKHRLHSYLRHGSAELRAKINSFLDVLDRDPECSVMFGF 1128

Query: 116  ---------ADVVESLIAALYLDGGIEVAGTFV 139
                     AD+VES+  A+ +D G +    +V
Sbjct: 1129 KALSGPKALADIVESVAGAILVDSGFDFEKLWV 1161



 Score = 36.6 bits (83), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 32/60 (53%)

Query: 39  SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
           SYE LE LGD +L   ++  L+    +  EGELS R +  +   T  ++A   DL  ++R
Sbjct: 829 SYEGLELLGDSVLKYAVTRKLYLLHSTMHEGELSDRRSHAICNSTLRKLAVAQDLPMYVR 888


>gi|158300291|ref|XP_320248.4| AGAP012289-PA [Anopheles gambiae str. PEST]
 gi|157013088|gb|EAA00264.4| AGAP012289-PA [Anopheles gambiae str. PEST]
          Length = 1672

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 77/163 (47%), Gaps = 33/163 (20%)

Query: 9    LEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            +E  +GY F NR+ L +A TH+S  S+S   SY++LEFLGD +L  L+S  ++    S  
Sbjct: 1426 IEATLGYRFRNRTYLLQAFTHTSYTSNSLTGSYQQLEFLGDAVLDFLVSMYIYERNPSMS 1485

Query: 68   EGELSVRFNSLVSAET--CSQVARELD-------------LASFIRVSSDLRKDVCSF-- 110
             G+L+   ++LV+     C  V  EL              +  F+ V    R    ++  
Sbjct: 1486 PGQLTDLRSALVNNVNLACVLVRNELHRHILSQSPMLTDAIGKFVAVHRCHRNQGSNWVR 1545

Query: 111  ---------------MTSIQADVVESLIAALYLDGGIEVAGTF 138
                           +  +  DV+E+LI A+YLD G ++A T+
Sbjct: 1546 LLTEESDTPMAEYVDVPKVLGDVLEALIGAIYLDSGNDLAATW 1588


>gi|326533632|dbj|BAK05347.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 381

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 73/148 (49%), Gaps = 28/148 (18%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHFDSA 66
           +E+ + Y F +RSLL++ALTH S S       SY+RLEF+GD  LGL  S  L+    + 
Sbjct: 46  VERLLQYRFRDRSLLDEALTHQSFSGGAGGAASYQRLEFVGDAALGLAFSNFLYLTNPTV 105

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD--VCSFMTSIQ--------- 115
             G LS    + +S E  ++VA   DL   +R +   R D  V  F+ S++         
Sbjct: 106 GPGALSTLRAANISTEKLARVAVRHDLYPLLRRNCP-RLDLLVGQFIESVKQELEDDLGI 164

Query: 116 --------------ADVVESLIAALYLD 129
                         AD+VE++ AA+Y+D
Sbjct: 165 TPYGGSVFKAPKVLADIVEAIAAAVYVD 192


>gi|326497771|dbj|BAK05975.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 379

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 73/148 (49%), Gaps = 28/148 (18%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHFDSA 66
           +E+ + Y F +RSLL++ALTH S S       SY+RLEF+GD  LGL  S  L+    + 
Sbjct: 44  VERLLQYRFRDRSLLDEALTHQSFSGGAGGAASYQRLEFVGDAALGLAFSNFLYLTNPTV 103

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD--VCSFMTSIQ--------- 115
             G LS    + +S E  ++VA   DL   +R +   R D  V  F+ S++         
Sbjct: 104 GPGALSTLRAANISTEKLARVAVRHDLYPLLRRNCP-RLDLLVGQFIESVKQELEDDLGI 162

Query: 116 --------------ADVVESLIAALYLD 129
                         AD+VE++ AA+Y+D
Sbjct: 163 TPYGGSVFKAPKVLADIVEAIAAAVYVD 190


>gi|255548081|ref|XP_002515097.1| dicer-1, putative [Ricinus communis]
 gi|223545577|gb|EEF47081.1| dicer-1, putative [Ricinus communis]
          Length = 1543

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 109/245 (44%), Gaps = 32/245 (13%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            + ++ +  LE  +   F +R LL +A+TH+S   S    Y+RLEF+GD +L  LI+  LF
Sbjct: 1199 LRSIDFDALEGALNIKFQDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 1258

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ---- 115
              + +   G L+    + V+ E  ++VA    L   +R  SS L K +  F+  +Q    
Sbjct: 1259 FTYTNLPPGRLTDLRAAAVNNENFARVAVNHKLHVHLRHGSSALEKQIRDFVREVQDELS 1318

Query: 116  ------------------ADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRD 156
                               D+VES+  A++LD G + A  + V +      +        
Sbjct: 1319 KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTAVVWKVFQPLLHPMVTPETLPMH 1378

Query: 157  AKTELQEWAHAKF-GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
               ELQE    +  G+  EYK T RSG       TV V I G+      +  K+ A+++A
Sbjct: 1379 PVRELQERCQQQAEGL--EYKAT-RSG----NLATVEVFIDGVQVGVAQNPQKKMAQKLA 1431

Query: 216  AAEVL 220
            A   L
Sbjct: 1432 ARNAL 1436



 Score = 38.9 bits (89), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 3/90 (3%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            L+  I Y+     +LE ALT +S   ++   YER E LGD  L  ++S  LF  +    E
Sbjct: 986  LKDIIHYSVPALKILE-ALTAASCQETF--CYERAELLGDAYLKWVVSRFLFLKYPQKHE 1042

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIR 98
            G+L+     +VS     Q A    L S+I+
Sbjct: 1043 GQLTRMRQQMVSNMVLYQYALIKGLQSYIQ 1072


>gi|168177333|pdb|3C4T|A Chain A, Structure Of Rnaseiiib And Dsrna Binding Domains Of Mouse
           Dicer
          Length = 265

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 102/252 (40%), Gaps = 43/252 (17%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
           + T EK+I Y F N++ L +A TH+S  + +  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 15  FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDXYQRLEFLGDAILDYLITKHLYEDPR 74

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111
               G L+   ++LV+    + +A + D   + +  S              L K+    M
Sbjct: 75  QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 134

Query: 112 TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149
            S                      D+ ESL  A+Y+D G+ +   +   Y   + L    
Sbjct: 135 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 194

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 195 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 247

Query: 210 AAEQVAAAEVLK 221
            A+  AA   L+
Sbjct: 248 IAKSAAARRALR 259


>gi|156368540|ref|XP_001627751.1| predicted protein [Nematostella vectensis]
 gi|156214670|gb|EDO35651.1| predicted protein [Nematostella vectensis]
          Length = 199

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 79/160 (49%), Gaps = 30/160 (18%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            EKRIGY F+N+  L +ALTH+S S +   + Y+RLEFLGD +L  L++ L+++   +  
Sbjct: 4   FEKRIGYEFSNKLYLIQALTHASYSQNRLTDCYQRLEFLGDALLDFLVTELIYSRNTNLD 63

Query: 68  EGELSVRFNSLVSAETCSQVARELDL-ASFIRVSSDLRKDVCSFMTSIQ----------- 115
            GEL+    +LV+    +++A +     S  ++S +    +  F+  ++           
Sbjct: 64  PGELTDLRQALVNNNIFAEIAVKHGFNKSLFQMSPEWFNKIGVFVDHVKEREARGIQDPF 123

Query: 116 -----------------ADVVESLIAALYLDGGIEVAGTF 138
                             D+ ES+  A++LD G+++  T+
Sbjct: 124 LTLSNDDEEGIEAPKVLGDIFESVAGAIFLDSGMDLVLTW 163


>gi|254281274|ref|NP_001156875.1| endoribonuclease Dicer [Taeniopygia guttata]
          Length = 1921

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 103/252 (40%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y+F N++ L +A TH+S  + +  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1665 FENFEKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1724

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSF------------- 110
                G L+   ++LV+    + +A + D   + + VS +L   +  F             
Sbjct: 1725 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGM 1784

Query: 111  ------------------MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149
                              +     D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 1785 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1844

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1845 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1897

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1898 IAKSAAARRALR 1909



 Score = 40.0 bits (92), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 18   ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
             N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   + 
Sbjct: 1293 PNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1350

Query: 78   LVSAETCSQVARELDLASFIRVS 100
             VS     ++ ++  L S + VS
Sbjct: 1351 KVSNCNLYRLGKKKGLPSRMVVS 1373


>gi|94957752|ref|NP_001035555.1| endoribonuclease Dicer [Gallus gallus]
 gi|257051054|sp|Q25BN1|DICER_CHICK RecName: Full=Endoribonuclease Dicer
 gi|90074858|dbj|BAE87103.1| Dicer protein [Gallus gallus]
          Length = 1921

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 103/252 (40%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y+F N++ L +A TH+S  + +  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1665 FENFEKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1724

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSF------------- 110
                G L+   ++LV+    + +A + D   + + VS +L   +  F             
Sbjct: 1725 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGM 1784

Query: 111  ------------------MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149
                              +     D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 1785 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1844

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1845 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1897

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1898 IAKSAAARRALR 1909



 Score = 40.0 bits (92), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 18   ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
             N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   + 
Sbjct: 1293 PNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1350

Query: 78   LVSAETCSQVARELDLASFIRVS 100
             VS     ++ ++  L S + VS
Sbjct: 1351 KVSNCNLYRLGKKKGLPSRMVVS 1373


>gi|218439615|ref|YP_002377944.1| ribonuclease III [Cyanothece sp. PCC 7424]
 gi|218172343|gb|ACK71076.1| Ribonuclease III [Cyanothece sp. PCC 7424]
          Length = 235

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 85/160 (53%), Gaps = 6/160 (3%)

Query: 21  SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
           SLL+ AL H S S     +Y++LEF+GD ++ L  + +L   +  A  GE +   + +VS
Sbjct: 30  SLLDLALIHPSFSKEV--NYQQLEFVGDAVVRLAAAEVLLETYPEAPVGEFAALRSIMVS 87

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG-GIEVAGTFV 139
             T ++ A    L  ++  ++ +  D    ++ + AD  E+++ ALYL    +++   ++
Sbjct: 88  DRTLAEFADVFGLERYLLTAAYVSGDEAGRISRL-ADAFEAVLGALYLSTHTMQLVRPWL 146

Query: 140 DKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           D+  +++A  +     R + K  LQEW  A + + P+Y+V
Sbjct: 147 DELLEKKAAEILQDPARLNYKDALQEWTQAHYKLLPQYRV 186


>gi|327259080|ref|XP_003214366.1| PREDICTED: endoribonuclease Dicer-like isoform 2 [Anolis
            carolinensis]
          Length = 1915

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 103/252 (40%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y+F N++ L +A TH+S  + +  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1659 FENFEKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1718

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSF------------- 110
                G L+   ++LV+    + +A + D   + + VS +L   +  F             
Sbjct: 1719 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGM 1778

Query: 111  ------------------MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149
                              +     D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 1779 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWHVYYPMMRPLIEKF 1838

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1839 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1891

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1892 IAKSAAARRALR 1903



 Score = 40.0 bits (92), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 18   ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
             N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   + 
Sbjct: 1287 PNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1344

Query: 78   LVSAETCSQVARELDLASFIRVS 100
             VS     ++ ++  L S + VS
Sbjct: 1345 KVSNCNLYRLGKKKGLPSRMVVS 1367


>gi|262278196|ref|ZP_06055981.1| ribonuclease III [Acinetobacter calcoaceticus RUH2202]
 gi|262258547|gb|EEY77280.1| ribonuclease III [Acinetobacter calcoaceticus RUH2202]
          Length = 155

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 74/148 (50%), Gaps = 3/148 (2%)

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG-IEVA 135
           +LV  E   ++A +L L+  + +S+   K       SI AD VE++I A+Y+D G + + 
Sbjct: 4   TLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRESILADTVEAIIGAIYIDSGDLNLL 63

Query: 136 GTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
              V K++      ++     +D K+ LQE+  A+    P Y+V    G      F V  
Sbjct: 64  TDIVLKWYVPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQHFKVEC 123

Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            I GL+   G   S+R AEQ AAAE+LK
Sbjct: 124 LIDGLSKIYGEGSSRRFAEQAAAAEILK 151


>gi|193786026|dbj|BAG51002.1| unnamed protein product [Homo sapiens]
          Length = 554

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 43/252 (17%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +   EK+I Y F N++ L +A TH+S  + +  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 298 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 357

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111
               G L+   ++LV+    + +A + D   + +  S              L K+    M
Sbjct: 358 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 417

Query: 112 TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149
            S                      D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 418 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 477

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 478 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 530

Query: 210 AAEQVAAAEVLK 221
            A+  AA   L+
Sbjct: 531 IAKSAAARRALR 542


>gi|109084784|ref|XP_001100868.1| PREDICTED: endoribonuclease Dicer [Macaca mulatta]
          Length = 1920

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S  + +  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1664 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1723

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111
                G L+   ++LV+    + +A + D   + +  S              L K+    M
Sbjct: 1724 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1783

Query: 112  TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149
             S                      D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 1784 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1843

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1844 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1896

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1897 IAKSAAARRALR 1908



 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 13   IGYAF----ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            IGY+      N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A E
Sbjct: 1281 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1338

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVS 100
            G LS   +  VS     ++ ++  L S + VS
Sbjct: 1339 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1370


>gi|114654611|ref|XP_001154010.1| PREDICTED: dicer1 isoform 1 [Pan troglodytes]
          Length = 1930

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S  + +  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1666 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1725

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111
                G L+   ++LV+    + +A + D   + +  S              L K+    M
Sbjct: 1726 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1785

Query: 112  TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149
             S                      D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 1786 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1845

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1846 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1898

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1899 IAKSAAARRALR 1910



 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 13   IGYAF----ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            IGY+      N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A E
Sbjct: 1283 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1340

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVS 100
            G LS   +  VS     ++ ++  L S + VS
Sbjct: 1341 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1372


>gi|327259078|ref|XP_003214365.1| PREDICTED: endoribonuclease Dicer-like isoform 1 [Anolis
            carolinensis]
          Length = 1918

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 103/252 (40%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y+F N++ L +A TH+S  + +  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1662 FENFEKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1721

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSF------------- 110
                G L+   ++LV+    + +A + D   + + VS +L   +  F             
Sbjct: 1722 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGM 1781

Query: 111  ------------------MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149
                              +     D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 1782 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWHVYYPMMRPLIEKF 1841

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1842 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1894

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1895 IAKSAAARRALR 1906



 Score = 40.0 bits (92), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 18   ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
             N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   + 
Sbjct: 1290 PNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1347

Query: 78   LVSAETCSQVARELDLASFIRVS 100
             VS     ++ ++  L S + VS
Sbjct: 1348 KVSNCNLYRLGKKKGLPSRMVVS 1370


>gi|119602001|gb|EAW81595.1| Dicer1, Dcr-1 homolog (Drosophila), isoform CRA_a [Homo sapiens]
          Length = 1923

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S  + +  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1667 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1726

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111
                G L+   ++LV+    + +A + D   + +  S              L K+    M
Sbjct: 1727 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1786

Query: 112  TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149
             S                      D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 1787 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1846

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1847 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1899

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1900 IAKSAAARRALR 1911



 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 13   IGYAF----ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            IGY+      N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A E
Sbjct: 1284 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1341

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVS 100
            G LS   +  VS     ++ ++  L S + VS
Sbjct: 1342 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1373


>gi|297695799|ref|XP_002825114.1| PREDICTED: endoribonuclease Dicer-like isoform 1 [Pongo abelii]
 gi|297695801|ref|XP_002825115.1| PREDICTED: endoribonuclease Dicer-like isoform 2 [Pongo abelii]
 gi|297695803|ref|XP_002825116.1| PREDICTED: endoribonuclease Dicer-like isoform 3 [Pongo abelii]
          Length = 1922

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S  + +  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1666 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1725

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111
                G L+   ++LV+    + +A + D   + +  S              L K+    M
Sbjct: 1726 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1785

Query: 112  TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149
             S                      D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 1786 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1845

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1846 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1898

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1899 IAKSAAARRALR 1910



 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 13   IGYAF----ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            IGY+      N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A E
Sbjct: 1283 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1340

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVS 100
            G LS   +  VS     ++ ++  L S + VS
Sbjct: 1341 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1372


>gi|29294649|ref|NP_085124.2| endoribonuclease Dicer isoform 1 [Homo sapiens]
 gi|29294651|ref|NP_803187.1| endoribonuclease Dicer isoform 1 [Homo sapiens]
 gi|257051056|sp|Q9UPY3|DICER_HUMAN RecName: Full=Endoribonuclease Dicer; AltName: Full=Helicase with
            RNase motif; Short=Helicase MOI
 gi|20521696|dbj|BAA76772.2| KIAA0928 protein [Homo sapiens]
 gi|119602002|gb|EAW81596.1| Dicer1, Dcr-1 homolog (Drosophila), isoform CRA_b [Homo sapiens]
 gi|152012889|gb|AAI50288.1| Dicer 1, ribonuclease type III [Homo sapiens]
 gi|307685563|dbj|BAJ20712.1| dicer 1, ribonuclease type III [synthetic construct]
          Length = 1922

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S  + +  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1666 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1725

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111
                G L+   ++LV+    + +A + D   + +  S              L K+    M
Sbjct: 1726 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1785

Query: 112  TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149
             S                      D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 1786 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1845

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1846 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1898

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1899 IAKSAAARRALR 1910



 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 13   IGYAF----ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            IGY+      N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A E
Sbjct: 1283 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1340

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVS 100
            G LS   +  VS     ++ ++  L S + VS
Sbjct: 1341 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1372


>gi|296215831|ref|XP_002754304.1| PREDICTED: endoribonuclease Dicer isoform 1 [Callithrix jacchus]
 gi|296215833|ref|XP_002754305.1| PREDICTED: endoribonuclease Dicer isoform 2 [Callithrix jacchus]
 gi|296215835|ref|XP_002754306.1| PREDICTED: endoribonuclease Dicer isoform 3 [Callithrix jacchus]
          Length = 1922

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S  + +  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1666 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1725

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111
                G L+   ++LV+    + +A + D   + +  S              L K+    M
Sbjct: 1726 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1785

Query: 112  TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149
             S                      D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 1786 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1845

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1846 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1898

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1899 IAKSAAARRALR 1910



 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 13   IGYAF----ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            IGY+      N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A E
Sbjct: 1283 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1340

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVS 100
            G LS   +  VS     ++ ++  L S + VS
Sbjct: 1341 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1372


>gi|114654613|ref|XP_001154199.1| PREDICTED: dicer1 isoform 3 [Pan troglodytes]
 gi|114654615|ref|XP_001154247.1| PREDICTED: dicer1 isoform 4 [Pan troglodytes]
 gi|114654617|ref|XP_001154306.1| PREDICTED: dicer1 isoform 5 [Pan troglodytes]
 gi|114654619|ref|XP_001154369.1| PREDICTED: endoribonuclease Dicer isoform 6 [Pan troglodytes]
          Length = 1922

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S  + +  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1666 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1725

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111
                G L+   ++LV+    + +A + D   + +  S              L K+    M
Sbjct: 1726 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1785

Query: 112  TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149
             S                      D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 1786 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1845

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1846 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1898

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1899 IAKSAAARRALR 1910



 Score = 40.8 bits (94), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 13   IGYAF----ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            IGY+      N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A E
Sbjct: 1283 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1340

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVS 100
            G LS   +  VS     ++ ++  L S + VS
Sbjct: 1341 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1372


>gi|5019620|dbj|BAA78691.1| helicase-MOI [Homo sapiens]
          Length = 1924

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 102/252 (40%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S  + +  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1668 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1727

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSF------------- 110
                G L+   ++LV+    + +A + D   + + VS +L   +  F             
Sbjct: 1728 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1787

Query: 111  ------------------MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149
                              +     D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 1788 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1847

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1848 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1900

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1901 IAKSAAARRALR 1912



 Score = 40.8 bits (94), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 13   IGYAF----ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            IGY+      N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A E
Sbjct: 1285 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1342

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVS 100
            G LS   +  VS     ++ ++  L S + VS
Sbjct: 1343 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1374


>gi|332223646|ref|XP_003260983.1| PREDICTED: endoribonuclease Dicer isoform 1 [Nomascus leucogenys]
 gi|332223648|ref|XP_003260984.1| PREDICTED: endoribonuclease Dicer isoform 2 [Nomascus leucogenys]
          Length = 1922

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S  + +  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1666 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1725

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111
                G L+   ++LV+    + +A + D   + +  S              L K+    M
Sbjct: 1726 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1785

Query: 112  TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149
             S                      D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 1786 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1845

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1846 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1898

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1899 IAKSAAARRALR 1910



 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 18   ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
             N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   + 
Sbjct: 1292 PNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1349

Query: 78   LVSAETCSQVARELDLASFIRVS 100
             VS     ++ ++  L S + VS
Sbjct: 1350 KVSNCNLYRLGKKKGLPSRMVVS 1372


>gi|194225335|ref|XP_001496219.2| PREDICTED: similar to Endoribonuclease Dicer (Helicase with RNase
            motif) (Helicase MOI) [Equus caballus]
          Length = 1785

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S  + +  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1529 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1588

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111
                G L+   ++LV+    + +A + D   + +  S              L K+    M
Sbjct: 1589 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1648

Query: 112  TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149
             S                      D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 1649 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1708

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1709 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1761

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1762 IAKSAAARRALR 1773



 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 18   ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
             N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   + 
Sbjct: 1157 PNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1214

Query: 78   LVSAETCSQVARELDLASFIRVS 100
             VS     ++ ++  L S + VS
Sbjct: 1215 KVSNCNLYRLGKKKGLPSRMVVS 1237


>gi|193787170|dbj|BAG52376.1| unnamed protein product [Homo sapiens]
          Length = 820

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 43/252 (17%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +   EK+I Y F N++ L +A TH+S  + +  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 564 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 623

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111
               G L+   ++LV+    + +A + D   + +  S              L K+    M
Sbjct: 624 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 683

Query: 112 TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149
            S                      D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 684 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 743

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 744 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 796

Query: 210 AAEQVAAAEVLK 221
            A+  AA   L+
Sbjct: 797 IAKSAAARRALR 808



 Score = 40.8 bits (94), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 13  IGYAF----ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           IGY+      N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A E
Sbjct: 181 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 238

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVS 100
           G LS   +  VS     ++ ++  L S + VS
Sbjct: 239 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 270


>gi|297848414|ref|XP_002892088.1| hypothetical protein ARALYDRAFT_333551 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297337930|gb|EFH68347.1| hypothetical protein ARALYDRAFT_333551 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1962

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 76/154 (49%), Gaps = 23/154 (14%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            + ++ +  LE+ + + F  + LL +A+TH+S   S    Y+RLEF+GD +L  LI+  LF
Sbjct: 1607 LKSIDFVGLERALKFEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 1666

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ---- 115
              + S   G L+    + V+ E  ++VA +  L  ++R  SS L K +  F+  +Q    
Sbjct: 1667 FTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESS 1726

Query: 116  ------------------ADVVESLIAALYLDGG 131
                               D+VES+  A++LD G
Sbjct: 1727 KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSG 1760



 Score = 41.2 bits (95), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 3/97 (3%)

Query: 2    SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
            S L    L+  I Y      +LE ALT +S   ++   YER E LGD  L  ++S  LF 
Sbjct: 1392 SMLLAVQLKNLISYPIPTSKILE-ALTAASCQETF--CYERAELLGDAYLKWVVSRYLFL 1448

Query: 62   HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
             +    EG+L+     +VS     Q A    L S+I+
Sbjct: 1449 KYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 1485


>gi|21665773|emb|CAB38857.2| hypothetical helicase K12H4.8-like protein [Homo sapiens]
          Length = 1912

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S  + +  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1656 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1715

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111
                G L+   ++LV+    + +A + D   + +  S              L K+    M
Sbjct: 1716 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1775

Query: 112  TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149
             S                      D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 1776 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1835

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1836 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1888

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1889 IAKSAAARRALR 1900



 Score = 40.8 bits (94), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 13   IGYAF----ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            IGY+      N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A E
Sbjct: 1273 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1330

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVS 100
            G LS   +  VS     ++ ++  L S + VS
Sbjct: 1331 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1362


>gi|300775975|ref|ZP_07085834.1| ribonuclease III [Chryseobacterium gleum ATCC 35910]
 gi|300505108|gb|EFK36247.1| ribonuclease III [Chryseobacterium gleum ATCC 35910]
          Length = 254

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 68/123 (55%), Gaps = 4/123 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L+K +G    N +L  +A +  + S +   +YERLEFLGD +LG +IS  LF  +  A
Sbjct: 28  TELKKVLGTEVQNIALYREAFSLKNSSKNQDSNYERLEFLGDSVLGTIISCHLFQTYPQA 87

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG L+   + +V+ +  +++  +L L + ++  +       +   +I  ++ E+LI A+
Sbjct: 88  NEGYLTQMKSKIVNRKNLNKLGEDLKLTNLLQKQN----SSSALGENISGNLFEALIGAV 143

Query: 127 YLD 129
           YLD
Sbjct: 144 YLD 146


>gi|170017643|ref|YP_001728562.1| dsRNA-specific ribonuclease [Leuconostoc citreum KM20]
 gi|238688973|sp|B1N016|RNC_LEUCK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|169804500|gb|ACA83118.1| dsRNA-specific ribonuclease [Leuconostoc citreum KM20]
          Length = 233

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 90/196 (45%), Gaps = 10/196 (5%)

Query: 17  FANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           F N +LL +ALT  +  + + +     Y+RLEFLGD ++ + ++  LF  + +  EG+L+
Sbjct: 18  FNNETLLLEALTQRNYLNEHPDEPGRDYQRLEFLGDSVMQVSVAEYLFKRYPNWHEGQLT 77

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
               ++V   + +  +R   L   IR+             S+  D+ E+ I ALYLD G 
Sbjct: 78  EMRIAMVQTRSFAHFSRVAHLNEGIRLGKGEEMSGARDRDSLLEDIWEAFIGALYLDQGF 137

Query: 133 EVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF- 189
           E    F+D+     A+ +  F R  D K+ LQE       V  +Y+        H+ +  
Sbjct: 138 EAVRKFLDQTLFA-AVDTDFFDRFIDFKSRLQEKLQKNGAVDIDYRTENEQQLSHNAQLF 196

Query: 190 --TVVVEISGLAPAQG 203
             +V V+   LA   G
Sbjct: 197 EASVSVDDHELARGTG 212


>gi|126290301|ref|XP_001367933.1| PREDICTED: similar to Dicer protein [Monodelphis domestica]
          Length = 1923

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S  + +  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1667 FENFEKKINYNFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1726

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111
                G L+   ++LV+    + +A + D   + +  S              L K+    M
Sbjct: 1727 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1786

Query: 112  TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149
             S                      D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 1787 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1846

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1847 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1899

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1900 IAKSAAARRALR 1911



 Score = 40.0 bits (92), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 18   ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
             N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   + 
Sbjct: 1295 PNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1352

Query: 78   LVSAETCSQVARELDLASFIRVS 100
             VS     ++ ++  L S + VS
Sbjct: 1353 KVSNCNLYRLGKKKGLPSRMVVS 1375


>gi|121714731|ref|XP_001274976.1| RNA helicase/RNAse III, putative [Aspergillus clavatus NRRL 1]
 gi|158706439|sp|A1C9M6|DCL2_ASPCL RecName: Full=Dicer-like protein 2; Includes: RecName:
            Full=Endoribonuclease dcl2; Includes: RecName:
            Full=ATP-dependent helicase dcl2
 gi|119403130|gb|EAW13550.1| RNA helicase/RNAse III, putative [Aspergillus clavatus NRRL 1]
          Length = 1389

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 60/101 (59%), Gaps = 5/101 (4%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +  L++ I Y F N SLL +ALTH S  + +  +SY+RLEFLGD +L ++I + +FNH  
Sbjct: 1099 HDRLKRHISYTFENESLLVEALTHPSCDYDASTQSYQRLEFLGDAVLDMIIVSAIFNHPV 1158

Query: 65   SAKEGELSVRFNSLVSAE----TCSQVARELDLASFIRVSS 101
               +G ++   ++LV+A      C + A   + AS  ++S+
Sbjct: 1159 QMPQGHMTKIKHALVNANLLAFLCMEFAIPEERASVEQIST 1199



 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 58/127 (45%), Gaps = 15/127 (11%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI- 97
            +Y+R EFLGD IL   +S  LF    +  EG LS   + +V     ++ A +  L +F+ 
Sbjct: 953  NYQRYEFLGDSILKFSVSCQLFFKHPNWHEGYLSEGRDEIVQNPRLTKAALDTGLDAFVI 1012

Query: 98   ------------RVSSDLRKDVCSFMTS--IQADVVESLIAALYLDGGIEVAGTFVDKYW 143
                         +S  L +       S  + ADVVE+LI A Y+DGG   A   + ++ 
Sbjct: 1013 TKMFTPRKWSAPLISERLERVAGKRQVSSKVLADVVEALIGAAYMDGGHAAAQACIRRFL 1072

Query: 144  KQRALKS 150
             +  L S
Sbjct: 1073 PEINLHS 1079


>gi|73963940|ref|XP_537547.2| PREDICTED: similar to dicer1 isoform 1 [Canis familiaris]
          Length = 1923

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S  + +  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1667 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1726

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111
                G L+   ++LV+    + +A + D   + +  S              L K+    M
Sbjct: 1727 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1786

Query: 112  TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149
             S                      D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 1787 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1846

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1847 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1899

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1900 IAKSAAARRALR 1911



 Score = 40.4 bits (93), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 18   ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
             N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   + 
Sbjct: 1293 PNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1350

Query: 78   LVSAETCSQVARELDLASFIRVS 100
             VS     ++ ++  L S + VS
Sbjct: 1351 KVSNCNLYRLGKKKGLPSRMVVS 1373


>gi|169768544|ref|XP_001818742.1| ATP-dependent helicase dcl2 [Aspergillus oryzae RIB40]
 gi|121804870|sp|Q2UNX5|DCL2_ASPOR RecName: Full=Dicer-like protein 2; Includes: RecName:
            Full=Endoribonuclease dcl2; Includes: RecName:
            Full=ATP-dependent helicase dcl2
 gi|83766600|dbj|BAE56740.1| unnamed protein product [Aspergillus oryzae]
          Length = 1377

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 49/75 (65%), Gaps = 1/75 (1%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            L++ +GY F N  LL +ALTH S  H    +SY+RLEFLGD IL ++I  ++F + +   
Sbjct: 1095 LQRHLGYTFKNEDLLIEALTHPSCQHDQTTQSYQRLEFLGDAILDMVIVPIIFQYSNKIS 1154

Query: 68   EGELSVRFNSLVSAE 82
             G++++  +++V+A 
Sbjct: 1155 PGDMTLIKHAVVNAN 1169



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 15/108 (13%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
            +Y+R EFLGD IL  ++S  LF    +  EG L+    ++V     ++ A +  L SFI 
Sbjct: 945  NYQRYEFLGDSILKYIVSCQLFFQNLNWPEGFLTEGRTTIVQNPRLTRAALDAGLDSFII 1004

Query: 99   VSS-DLRKDVCSFMTS--------------IQADVVESLIAALYLDGG 131
              +   R+ +   +++              + ADV+E+LI A YLDGG
Sbjct: 1005 TKALTPRRWIAPLISTRVGAAPVKRQMSAKVLADVIEALIGAAYLDGG 1052


>gi|73963946|ref|XP_868526.1| PREDICTED: similar to dicer1 isoform 4 [Canis familiaris]
          Length = 1900

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S  + +  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1644 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1703

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111
                G L+   ++LV+    + +A + D   + +  S              L K+    M
Sbjct: 1704 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1763

Query: 112  TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149
             S                      D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 1764 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1823

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1824 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1876

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1877 IAKSAAARRALR 1888



 Score = 40.4 bits (93), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 18   ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
             N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   + 
Sbjct: 1293 PNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1350

Query: 78   LVSAETCSQVARELDLASFIRVS 100
             VS     ++ ++  L S + VS
Sbjct: 1351 KVSNCNLYRLGKKKGLPSRMVVS 1373


>gi|73963944|ref|XP_868522.1| PREDICTED: similar to Endoribonuclease Dicer (Helicase with RNase
           motif) (Helicase-MOI) isoform 3 [Canis familiaris]
          Length = 821

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 43/252 (17%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +   EK+I Y F N++ L +A TH+S  + +  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 565 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 624

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111
               G L+   ++LV+    + +A + D   + +  S              L K+    M
Sbjct: 625 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 684

Query: 112 TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149
            S                      D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 685 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 744

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 745 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 797

Query: 210 AAEQVAAAEVLK 221
            A+  AA   L+
Sbjct: 798 IAKSAAARRALR 809



 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 18  ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   + 
Sbjct: 191 PNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 248

Query: 78  LVSAETCSQVARELDLASFIRVS 100
            VS     ++ ++  L S + VS
Sbjct: 249 KVSNCNLYRLGKKKGLPSRMVVS 271


>gi|109478606|ref|XP_001068155.1| PREDICTED: dicer 1, ribonuclease type III [Rattus norvegicus]
 gi|109479876|ref|XP_001069041.1| PREDICTED: dicer 1, ribonuclease type III [Rattus norvegicus]
 gi|149025439|gb|EDL81806.1| rCG20888 [Rattus norvegicus]
          Length = 1918

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S  + +  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1662 FENFEKKINYIFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1721

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111
                G L+   ++LV+    + +A + D   + +  S              L K+    M
Sbjct: 1722 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1781

Query: 112  TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149
             S                      D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 1782 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKF 1841

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1842 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1894

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1895 IAKSAAARRALR 1906



 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 18   ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
             N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   + 
Sbjct: 1292 PNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1349

Query: 78   LVSAETCSQVARELDLASFIRVS 100
             VS     ++ ++  L S + VS
Sbjct: 1350 KVSNCNLYRLGKKQGLPSRMVVS 1372


>gi|19072784|gb|AAL84637.1|AF484523_1 endoribonuclease Dicer [Mus musculus]
          Length = 361

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 102/252 (40%), Gaps = 43/252 (17%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
           + T EK+I Y F N++ L +A TH+S  + +  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 105 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 164

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111
               G L+   ++LV+    + +A + D   + +  S              L K+    M
Sbjct: 165 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 224

Query: 112 TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149
            S                      D+ ESL  A+Y+D G+ +   +   Y   + L    
Sbjct: 225 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 284

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 285 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 337

Query: 210 AAEQVAAAEVLK 221
            A+  AA   L+
Sbjct: 338 IAKSAAARRALR 349


>gi|47210543|emb|CAF93935.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 479

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 101/252 (40%), Gaps = 43/252 (17%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +   E++I Y F N++ L +A TH+S  + +  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 223 FENFERKISYTFQNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 282

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-------------VSSDLRKDVCSFM 111
               G L+   ++LV+    + +A + D   + +             V   L K+    M
Sbjct: 283 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAISPELFHVIDDFVQFQLEKNEMQGM 342

Query: 112 TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149
            S                      D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 343 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 402

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 403 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 455

Query: 210 AAEQVAAAEVLK 221
            A+  AA   L+
Sbjct: 456 IAKSAAARRALR 467


>gi|110520367|gb|ABG74922.1| Dicer-like 1b protein [Physcomitrella patens]
          Length = 1695

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 79/156 (50%), Gaps = 23/156 (14%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            M ++ +S+L+K +G+ F  RSLL +A+TH+S        Y+RLEF+GD +L  LI+  LF
Sbjct: 1339 MRSIDFSSLQKNVGHEFRERSLLVEAITHASRPSLGVPCYQRLEFVGDAVLDHLITRYLF 1398

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQV---------------ARELDLASFIR-VSSDLR 104
              + +   G L+    + V+ E  ++V               A E  + +F+  + S+L 
Sbjct: 1399 FKYTNLPPGRLTDLRAAAVNNENFARVAVKHSYHLHLRHGSTALETQIRNFVNDIHSELD 1458

Query: 105  KD-VCSF------MTSIQADVVESLIAALYLDGGIE 133
            K  V SF         +  D+ ES+  AL+LD  ++
Sbjct: 1459 KPGVNSFGLGDFKAPKVLGDIFESIAGALFLDARLD 1494



 Score = 40.0 bits (92), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            L+ +I Y  A   +   ALT +S   ++  SYER E L D  L  ++S  LF  F S  E
Sbjct: 1122 LKHQIDYPIAASKV---ALTAASGQETF--SYERAELLSDAYLEWVVSHRLFLKFPSKHE 1176

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIR 98
            G+L+     +VS     Q A E  L S+I+
Sbjct: 1177 GQLTRMRQKIVSNSVLYQHALEKGLQSYIQ 1206


>gi|308237838|ref|NP_001184123.1| endoribonuclease Dicer [Sus scrofa]
 gi|307715909|gb|ADN88174.1| dicer [Sus scrofa]
          Length = 1915

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 102/252 (40%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E++I Y+F N++ L +A TH+S  + +  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1659 FENFERKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1718

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111
                G L+   ++LV+    + +A + D   + +  S              L K+    M
Sbjct: 1719 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1778

Query: 112  TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149
             S                      D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 1779 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKF 1838

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1839 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1891

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1892 IAKSAAARRALR 1903



 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 18   ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
             N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   + 
Sbjct: 1290 PNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1347

Query: 78   LVSAETCSQVARELDLASFIRVS 100
             VS     ++ ++  L S + VS
Sbjct: 1348 KVSNCNLYRLGKKKGLPSRMVVS 1370


>gi|257051055|sp|A0MQH0|DICER_CRIGR RecName: Full=Endoribonuclease Dicer
 gi|116831677|gb|ABK28790.1| DICER [Cricetulus griseus]
          Length = 1917

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S  + +  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1661 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1720

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111
                G L+   ++LV+    + +A + D   + +  S              L K+    M
Sbjct: 1721 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1780

Query: 112  TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149
             S                      D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 1781 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKF 1840

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1841 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1893

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1894 IAKSAAARRALR 1905



 Score = 40.4 bits (93), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 18   ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
             N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   + 
Sbjct: 1292 PNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1349

Query: 78   LVSAETCSQVARELDLASFIRVS 100
             VS     ++ ++  L S + VS
Sbjct: 1350 KVSNCNLYRLGKKKGLPSRMVVS 1372


>gi|42733596|ref|NP_976235.1| endoribonuclease Dicer [Bos taurus]
 gi|257051053|sp|Q6TUI4|DICER_BOVIN RecName: Full=Endoribonuclease Dicer
 gi|38679195|gb|AAR26432.1| dicer [Bos taurus]
          Length = 1923

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S  + +  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1667 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1726

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111
                G L+   ++LV+    + +A + D   + +  S              L K+    M
Sbjct: 1727 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1786

Query: 112  TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149
             S                      D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 1787 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1846

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1847 SANVPRSPVRELLEMEPEITKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1899

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1900 IAKSAAARRALR 1911


>gi|296475171|gb|DAA17286.1| endoribonuclease Dicer [Bos taurus]
          Length = 1922

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S  + +  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1667 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1726

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111
                G L+   ++LV+    + +A + D   + +  S              L K+    M
Sbjct: 1727 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1786

Query: 112  TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149
             S                      D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 1787 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1846

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1847 SANVPRSPVRELLEMEPEITKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1899

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1900 IAKSAAARRALR 1911


>gi|126697134|ref|YP_001092020.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9301]
 gi|126544177|gb|ABO18419.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9301]
          Length = 249

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 94/204 (46%), Gaps = 7/204 (3%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
             +A  HSS       +YE+LEF GD +L L  S  +   +     GE S     +VS E
Sbjct: 42  FNQAFIHSSEDKII--NYEKLEFFGDAVLRLAASNFIEKKYPQLSVGERSELRAQIVSDE 99

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY-LDGGIEVAGTFVDK 141
             +++ R++++   I        D  S   +I  +  E+LI A+Y     I+    ++D 
Sbjct: 100 WLTKLGRKIEIDKLIIKGPKALGDENS-KNTIIGEATEALIGAVYKCFNSIQEINLWLDN 158

Query: 142 YWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGL 198
            W++ + +     ++  +KT LQEW  +K    P YK+   S  + D  RF+  + I GL
Sbjct: 159 IWEEDSEQFLKAPYKYKSKTVLQEWCQSKGFDLPVYKIMEVSKKNGDLKRFSCDIFIEGL 218

Query: 199 APAQGMDCSKRAAEQVAAAEVLKR 222
             +     S + AE  AA  ++++
Sbjct: 219 KESSAFGKSHKQAETNAARVLIEK 242


>gi|255733032|ref|XP_002551439.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240131180|gb|EER30741.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 623

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 104/220 (47%), Gaps = 22/220 (10%)

Query: 22  LLEKALTHSSI--SHSYQES-------YERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           L E+  TH S   + +Y  +        ERLEFLGD IL  L++ ++F  F++  EGELS
Sbjct: 255 LFERVFTHKSFVNNKNYLNNSELLKLHNERLEFLGDSILNNLVTLIIFKEFNNCNEGELS 314

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQADVVESLIAALYLDGG 131
               SL+  +T  + A E    +  R+ S + K+ + S    I ADV E+ I AL ++ G
Sbjct: 315 KIRASLICNKTLLKFAYEYGFDT--RLKSFINKEAIKSGDQKIYADVFEAYIGALGIERG 372

Query: 132 I---EVAGTFVDKYWK-----QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
               EV    +  +       ++ L       +AK+EL      +  + P+YKV    G 
Sbjct: 373 NDLKEVQDWLIKLFEPLIFELKKDLNKEPLDNNAKSELYSLI-GRTDMHPQYKV-IEEGD 430

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             + +F V   ++G    +G++ S + A   AA E LK +
Sbjct: 431 GVEKKFIVSCMMNGEEIGKGVEKSIKDAGIRAAMEALKNK 470


>gi|255550219|ref|XP_002516160.1| Ribonuclease III, putative [Ricinus communis]
 gi|223544646|gb|EEF46162.1| Ribonuclease III, putative [Ricinus communis]
          Length = 1660

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 78/155 (50%), Gaps = 24/155 (15%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            +E ++GY F+ + LL++A+TH+S+        Y+RLEFLGD +L LLI+  L+ +  S  
Sbjct: 1265 IESKLGYTFSVKFLLQEAMTHASMQEQGIGYCYQRLEFLGDSVLDLLITWHLYQNHTSMD 1324

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ----------- 115
             GEL+   ++ VS E  +QV    DL   ++  S+ L   +  ++ S             
Sbjct: 1325 PGELTDLRSACVSNENFAQVVVRRDLYKHLQHCSTLLLSQIKEYLESFHESDEVAKATGP 1384

Query: 116  ------ADVVESLIAALYLDGGIEVAGTFVDKYWK 144
                   D++ES+  A+ +D  +      +D+ W+
Sbjct: 1385 KGPKALGDLLESIAGAMLIDAKLN-----LDEVWR 1414



 Score = 38.5 bits (88), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 32/63 (50%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
            S ERLE LGD +L   +S  LF  + +  EG+LS +    V   T  Q+     L  +IR
Sbjct: 1084 SMERLELLGDSVLKYSVSCDLFLRYPTKHEGQLSAQRTRAVCNSTLHQLGIGCKLQGYIR 1143

Query: 99   VSS 101
             S+
Sbjct: 1144 DSA 1146


>gi|148686841|gb|EDL18788.1| Dicer1, Dcr-1 homolog (Drosophila), isoform CRA_b [Mus musculus]
          Length = 1908

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 102/252 (40%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
            + T EK+I Y F N++ L +A TH+S  + +  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1652 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1711

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111
                G L+   ++LV+    + +A + D   + +  S              L K+    M
Sbjct: 1712 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 1771

Query: 112  TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149
             S                      D+ ESL  A+Y+D G+ +   +   Y   + L    
Sbjct: 1772 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 1831

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1832 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1884

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1885 IAKSAAARRALR 1896



 Score = 40.4 bits (93), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 13   IGYAF----ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            +GY+      N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A E
Sbjct: 1275 VGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1332

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVS 100
            G LS   +  VS     ++ ++  L S + VS
Sbjct: 1333 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1364


>gi|213158242|ref|YP_002320293.1| ribonuclease III [Acinetobacter baumannii AB0057]
 gi|215482645|ref|YP_002324839.1| Ribonuclease 3 [Acinetobacter baumannii AB307-0294]
 gi|213057402|gb|ACJ42304.1| ribonuclease III [Acinetobacter baumannii AB0057]
 gi|213986369|gb|ACJ56668.1| Ribonuclease 3 [Acinetobacter baumannii AB307-0294]
 gi|322509030|gb|ADX04484.1| rnc [Acinetobacter baumannii 1656-2]
 gi|323519012|gb|ADX93393.1| ribonuclease III [Acinetobacter baumannii TCDC-AB0715]
          Length = 155

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 73/148 (49%), Gaps = 3/148 (2%)

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG-IEVA 135
           +LV  E   ++A +L L+  + +S+   K       SI AD VE++I A+YLD   + + 
Sbjct: 4   TLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRESILADTVEAIIGAIYLDSSDLNLL 63

Query: 136 GTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
              V K++      ++     +D K+ LQE+  A+    P Y+V    G      F V  
Sbjct: 64  KDIVLKWYTPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQHFKVEC 123

Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            + GL+   G   S+R AEQ AAAE+LK
Sbjct: 124 LVDGLSKIHGEGSSRRFAEQAAAAEILK 151


>gi|148686840|gb|EDL18787.1| Dicer1, Dcr-1 homolog (Drosophila), isoform CRA_a [Mus musculus]
          Length = 1916

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 102/252 (40%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
            + T EK+I Y F N++ L +A TH+S  + +  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1660 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1719

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111
                G L+   ++LV+    + +A + D   + +  S              L K+    M
Sbjct: 1720 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 1779

Query: 112  TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149
             S                      D+ ESL  A+Y+D G+ +   +   Y   + L    
Sbjct: 1780 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 1839

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1840 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1892

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1893 IAKSAAARRALR 1904



 Score = 40.4 bits (93), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 13   IGYAF----ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            +GY+      N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A E
Sbjct: 1283 VGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1340

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVS 100
            G LS   +  VS     ++ ++  L S + VS
Sbjct: 1341 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1372


>gi|117168271|ref|NP_683750.2| endoribonuclease Dicer [Mus musculus]
 gi|225000568|gb|AAI72621.1| Dicer1, Dcr-1 homolog (Drosophila) [synthetic construct]
          Length = 1906

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 102/252 (40%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
            + T EK+I Y F N++ L +A TH+S  + +  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1650 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1709

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111
                G L+   ++LV+    + +A + D   + +  S              L K+    M
Sbjct: 1710 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 1769

Query: 112  TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149
             S                      D+ ESL  A+Y+D G+ +   +   Y   + L    
Sbjct: 1770 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 1829

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1830 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1882

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1883 IAKSAAARRALR 1894



 Score = 40.4 bits (93), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 13   IGYAF----ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            +GY+      N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A E
Sbjct: 1273 VGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1330

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVS 100
            G LS   +  VS     ++ ++  L S + VS
Sbjct: 1331 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1362


>gi|71051733|gb|AAH98796.1| Dicer1 protein [Rattus norvegicus]
          Length = 401

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 43/252 (17%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +   EK+I Y F N++ L +A TH+S  + +  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 145 FENFEKKINYIFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 204

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111
               G L+   ++LV+    + +A + D   + +  S              L K+    M
Sbjct: 205 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 264

Query: 112 TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149
            S                      D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 265 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKF 324

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 325 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVELVGKGKFKGVGRSYR 377

Query: 210 AAEQVAAAEVLK 221
            A+  AA   L+
Sbjct: 378 IAKSAAARRALR 389


>gi|257051057|sp|Q8R418|DICER_MOUSE RecName: Full=Endoribonuclease Dicer; AltName:
            Full=Double-strand-specific ribonuclease mDCR-1
          Length = 1916

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 102/252 (40%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
            + T EK+I Y F N++ L +A TH+S  + +  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1660 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1719

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111
                G L+   ++LV+    + +A + D   + +  S              L K+    M
Sbjct: 1720 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 1779

Query: 112  TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149
             S                      D+ ESL  A+Y+D G+ +   +   Y   + L    
Sbjct: 1780 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 1839

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1840 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1892

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1893 IAKSAAARRALR 1904



 Score = 40.4 bits (93), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 13   IGYAF----ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            +GY+      N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A E
Sbjct: 1283 VGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1340

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVS 100
            G LS   +  VS     ++ ++  L S + VS
Sbjct: 1341 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1372


>gi|302764440|ref|XP_002965641.1| hypothetical protein SELMODRAFT_84784 [Selaginella moellendorffii]
 gi|300166455|gb|EFJ33061.1| hypothetical protein SELMODRAFT_84784 [Selaginella moellendorffii]
          Length = 524

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 28/167 (16%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLL 59
           ++++ +  LE  +GY+F +R+LL +ALTHSS    S    YERLEF+GD +L  L++  +
Sbjct: 190 LNSIDFEGLENTLGYSFRSRNLLAQALTHSSSRQASMVPIYERLEFIGDAVLDHLLTRHI 249

Query: 60  FNHFDSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF-------- 110
           +  +     G L+ +R  +L S      + +    A  +  S+D    + ++        
Sbjct: 250 YFSYKDLHPGRLTDLRCAALNSESFARAMVKHKLHAHILHESNDFHSQIKTYAKHALNME 309

Query: 111 -------------MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
                           +  DV +SL+ A+Y+D G+      +D+ WK
Sbjct: 310 ENAIYSYGFGAVKAPKVLGDVFQSLVGAVYIDSGLN-----LDQVWK 351



 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 7/127 (5%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L K I Y      +LE ALT ++    Y   YER+E LGD  L   +ST L+  F    E
Sbjct: 31  LRKAINYNIPASKILE-ALTAANCHEPY--CYERIELLGDAYLKWAVSTRLYLKFSDFPE 87

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDL----RKDVCSFMTSIQADVVESLIA 124
           GEL++    ++S      +A E  L +++R++  +      D+    + + A+VVE+LI 
Sbjct: 88  GELTITRGKIISNSALHYLALEKGLETYVRINPFVPGREPTDLQELSSKVLANVVEALIG 147

Query: 125 ALYLDGG 131
           A Y+  G
Sbjct: 148 AYYVHHG 154


>gi|20385913|gb|AAM21495.1|AF430845_1 dicer-like protein [Mus musculus]
          Length = 1917

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 102/252 (40%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
            + T EK+I Y F N++ L +A TH+S  + +  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1661 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1720

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111
                G L+   ++LV+    + +A + D   + +  S              L K+    M
Sbjct: 1721 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 1780

Query: 112  TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149
             S                      D+ ESL  A+Y+D G+ +   +   Y   + L    
Sbjct: 1781 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 1840

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1841 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1893

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1894 IAKSAAARRALR 1905



 Score = 40.4 bits (93), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 13   IGYAF----ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            +GY+      N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A E
Sbjct: 1284 VGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1341

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVS 100
            G LS   +  VS     ++ ++  L S + VS
Sbjct: 1342 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1373


>gi|113953295|ref|YP_729437.1| ribonuclease III [Synechococcus sp. CC9311]
 gi|113880646|gb|ABI45604.1| ribonuclease III [Synechococcus sp. CC9311]
          Length = 254

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 15/179 (8%)

Query: 19  NRSLLE---KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
           NR  LE   +ALTH+S        +E+LEFLGD +L L  S  + +       GE S   
Sbjct: 30  NREQLEHLNEALTHTSTG--LARHHEQLEFLGDAVLRLAASDFIESEHPQMPVGERSALR 87

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY-LDGGIEV 134
             LVS    +++   + +   ++V S    D  +  T ++A+  E+LI A+Y + G +  
Sbjct: 88  AQLVSDRWLAELGTTIGIEVLLQVGSKASGDQAARST-LRAEHCEALIGAIYRISGKVSP 146

Query: 135 AGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEY---KVTFRSGPDHDPR 188
              ++  YW++  R + +   R ++K+ LQEW  A+    P Y   +V  R G   DPR
Sbjct: 147 VQCWLTPYWRETSRDVLADPHRGNSKSALQEWTQAQGLGLPIYECHEVNKRHG---DPR 202


>gi|37360146|dbj|BAC98051.1| mKIAA0928 protein [Mus musculus]
          Length = 1475

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 102/252 (40%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
            + T EK+I Y F N++ L +A TH+S  + +  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1219 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1278

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111
                G L+   ++LV+    + +A + D   + +  S              L K+    M
Sbjct: 1279 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 1338

Query: 112  TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149
             S                      D+ ESL  A+Y+D G+ +   +   Y   + L    
Sbjct: 1339 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 1398

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1399 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1451

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1452 IAKSAAARRALR 1463



 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 13  IGYAF----ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +GY+      N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A E
Sbjct: 842 VGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 899

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVS 100
           G LS   +  VS     ++ ++  L S + VS
Sbjct: 900 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 931


>gi|302793023|ref|XP_002978277.1| hypothetical protein SELMODRAFT_108314 [Selaginella moellendorffii]
 gi|300154298|gb|EFJ20934.1| hypothetical protein SELMODRAFT_108314 [Selaginella moellendorffii]
          Length = 1728

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 28/167 (16%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            M+++ +  LE  IGY F  +S+L +A++H+S   +    Y+RLEF+GD +L  LI+  LF
Sbjct: 1379 MNSIDFEKLELAIGYKFQMKSVLVEAISHASRPSAGVPCYQRLEFVGDAVLDHLITRYLF 1438

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQV---------------ARELDLASFIR-VSSDLR 104
              +     G L+    + V+ E  +++               A E  +  F++ + S+L 
Sbjct: 1439 FRYQDLPPGRLTDLRAAAVNNENFARISVKHSFHLHLRHGSSALEAQIKDFVKDIQSELD 1498

Query: 105  KD-VCSF------MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
            K  + SF         +  D++ES+  A++LD G+       D+ WK
Sbjct: 1499 KPGINSFGIGDFKAPKVLGDILESIAGAIFLDTGLA-----ADEVWK 1540



 Score = 38.9 bits (89), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 3/90 (3%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            L+  IG+      +LE ALT +S   ++  SYER E LGD  L  ++S  LF       E
Sbjct: 1161 LKHEIGFPIPAAKVLE-ALTAASCQETF--SYERAELLGDAYLKWVVSRRLFIKHPRKHE 1217

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIR 98
            G+L+      VS     + A    L S+I+
Sbjct: 1218 GQLTRMRQQTVSNMVLYEFAISKSLQSYIQ 1247


>gi|74204500|dbj|BAE23515.1| unnamed protein product [Mus musculus]
          Length = 514

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 102/252 (40%), Gaps = 43/252 (17%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
           + T EK+I Y F N++ L +A TH+S  + +  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 258 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 317

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111
               G L+   ++LV+    + +A + D   + +  S              L K+    M
Sbjct: 318 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 377

Query: 112 TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149
            S                      D+ ESL  A+Y+D G+ +   +   Y   + L    
Sbjct: 378 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 437

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 438 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 490

Query: 210 AAEQVAAAEVLK 221
            A+  AA   L+
Sbjct: 491 IAKSAAARRALR 502


>gi|302765743|ref|XP_002966292.1| hypothetical protein SELMODRAFT_86110 [Selaginella moellendorffii]
 gi|300165712|gb|EFJ32319.1| hypothetical protein SELMODRAFT_86110 [Selaginella moellendorffii]
          Length = 1730

 Score = 62.0 bits (149), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 28/167 (16%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            M+++ +  LE  IGY F  +S+L +A++H+S   +    Y+RLEF+GD +L  LI+  LF
Sbjct: 1379 MNSIDFEKLELAIGYKFQMKSVLVEAISHASRPSAGVPCYQRLEFVGDAVLDHLITRYLF 1438

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQV---------------ARELDLASFIR-VSSDLR 104
              +     G L+    + V+ E  +++               A E  +  F++ + S+L 
Sbjct: 1439 FRYQDLPPGRLTDLRAAAVNNENFARISVKHSFHLHLRHGSSALEAQIKDFVKDIQSELD 1498

Query: 105  KD-VCSF------MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
            K  + SF         +  D++ES+  A++LD G+       D+ WK
Sbjct: 1499 KPGINSFGIGDFKAPKVLGDILESIAGAIFLDTGLA-----ADEVWK 1540



 Score = 38.5 bits (88), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 3/90 (3%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            L+  IG+      +LE ALT +S   ++  SYER E LGD  L  ++S  LF       E
Sbjct: 1161 LKHEIGFPIPAAKVLE-ALTAASCQETF--SYERAELLGDAYLKWVVSRRLFIKHPRKHE 1217

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIR 98
            G+L+      VS     + A    L S+I+
Sbjct: 1218 GQLTRMRQQTVSNMVLYEFAISKSLQSYIQ 1247


>gi|22830885|dbj|BAC15765.1| double-strand-specific ribonuclease MDCR [Mus musculus]
          Length = 1906

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 102/252 (40%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
            + T EK+I Y F N++ L +A TH+S  + +  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1650 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1709

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111
                G L+   ++LV+    + +A + D   + +  S              L K+    M
Sbjct: 1710 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 1769

Query: 112  TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149
             S                      D+ ESL  A+Y+D G+ +   +   Y   + L    
Sbjct: 1770 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 1829

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1830 SANVPRSPVRELLEMEPETAEFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1882

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1883 IAKSAAARRALR 1894



 Score = 40.4 bits (93), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 13   IGYAF----ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            +GY+      N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A E
Sbjct: 1273 VGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1330

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVS 100
            G LS   +  VS     ++ ++  L S + VS
Sbjct: 1331 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1362


>gi|270015102|gb|EFA11550.1| dicer-1 [Tribolium castaneum]
          Length = 1835

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 1/124 (0%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y   E+ IGY F +RS L +ALTH+S S ++  + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1579 YDQFERHIGYKFRDRSYLLQALTHASFSPNTLTDCYQRLEFLGDAVLDYLITRHLYEDTR 1638

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
                G L+   ++LV+    + +A       + R  S    +V      +Q D   +L+ 
Sbjct: 1639 MHSPGALTDLRSALVNNTIFASLAVRNGFHRYFRNLSPSLNEVVEKFVRLQEDSGHTLVD 1698

Query: 125  ALYL 128
             LYL
Sbjct: 1699 ELYL 1702


>gi|281339672|gb|EFB15256.1| hypothetical protein PANDA_009266 [Ailuropoda melanoleuca]
          Length = 1917

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 101/245 (41%), Gaps = 36/245 (14%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S  + +  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1668 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1727

Query: 65   SAKEGELSVRFNSLVSAETCSQVAR------------------ELDLASFIRVSSDLRKD 106
                G L+   ++LV+    + +A                   +L+      + S+LR+ 
Sbjct: 1728 QHSPGVLTDLRSALVNNTIFASLAYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRS 1787

Query: 107  -------VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK---SGKFRRD 156
                       +     D+ ESL  A+Y+D G+ +   +   Y   R L    S    R 
Sbjct: 1788 EEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRS 1847

Query: 157  AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
               EL E        +P  +        +D +  V VE+ G    +G+  S R A+  AA
Sbjct: 1848 PVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAA 1900

Query: 217  AEVLK 221
               L+
Sbjct: 1901 RRALR 1905



 Score = 40.4 bits (93), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 18   ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
             N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   + 
Sbjct: 1294 PNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1351

Query: 78   LVSAETCSQVARELDLASFIRVS 100
             VS     ++ ++  L S + VS
Sbjct: 1352 KVSNCNLYRLGKKKGLPSRMVVS 1374


>gi|322510548|gb|ADX05862.1| putative ribonuclease III [Organic Lake phycodnavirus 1]
          Length = 293

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 107/249 (42%), Gaps = 44/249 (17%)

Query: 16  AFANRSLLEKA-LTHSSISHS----YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
           AF N S +++  + +SS   +     Q S ERLEF+GD IL L+    L+  F  A EG 
Sbjct: 42  AFVNSSYIKQPNIMYSSCPFNCLELKQSSNERLEFIGDGILELITKYYLYKRFPDADEGF 101

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVS--SDLRKDVCSFMTSIQADVVESLIAALYL 128
           ++ +  +LV  +   ++A +L L  ++ +S  S+ +K+ C++       + ES + AL+L
Sbjct: 102 MTEKKINLVKNDHIGKLAYKLGLHKYLLLSKQSEEKKNRCNYKKL--GCLFESFLGALFL 159

Query: 129 D------------GGIEVAGTFVDKYWKQRALKSGKFRRD--AKTELQEWAHAKFGVTPE 174
           D             GI+    F++  + +    +     D   K   Q     +F  TPE
Sbjct: 160 DTNETQDELFLMGNGIQYCQLFIENVFNKLVDWTEILENDDNYKNIFQVKIQKEFKCTPE 219

Query: 175 YKVT---------------FRSGPDHDPRFTVVVEISGLAP------AQGMDCSKRAAEQ 213
           YK+                  S      +F ++  +  + P        G+   K+ AEQ
Sbjct: 220 YKIIQQDEELRYTMGVYLYLNSKDTSSTKFELIKNLEHIKPNTNVHFGTGVHKIKKKAEQ 279

Query: 214 VAAAEVLKR 222
           +A  + LK+
Sbjct: 280 LACLDALKK 288


>gi|189234048|ref|XP_968993.2| PREDICTED: Dicer-1 [Tribolium castaneum]
          Length = 1865

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 1/124 (0%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y   E+ IGY F +RS L +ALTH+S S ++  + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1609 YDQFERHIGYKFRDRSYLLQALTHASFSPNTLTDCYQRLEFLGDAVLDYLITRHLYEDTR 1668

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
                G L+   ++LV+    + +A       + R  S    +V      +Q D   +L+ 
Sbjct: 1669 MHSPGALTDLRSALVNNTIFASLAVRNGFHRYFRNLSPSLNEVVEKFVRLQEDSGHTLVD 1728

Query: 125  ALYL 128
             LYL
Sbjct: 1729 ELYL 1732


>gi|149636857|ref|XP_001510982.1| PREDICTED: similar to Dicer protein [Ornithorhynchus anatinus]
          Length = 1921

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 101/252 (40%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E++I Y F N++ L +A TH+S  + +  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1665 FENFERKINYNFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1724

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM 111
                G L+   ++LV+    + +A + D   + +  S              L K+    M
Sbjct: 1725 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1784

Query: 112  TS-------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149
             S                      D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 1785 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1844

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1845 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1897

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1898 IAKSAAARRALR 1909



 Score = 40.0 bits (92), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 18   ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
             N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   + 
Sbjct: 1293 PNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1350

Query: 78   LVSAETCSQVARELDLASFIRVS 100
             VS     ++ ++  L S + VS
Sbjct: 1351 KVSNCNLYRLGKKKGLPSRMVVS 1373


>gi|224109196|ref|XP_002315119.1| dicer-like protein [Populus trichocarpa]
 gi|222864159|gb|EEF01290.1| dicer-like protein [Populus trichocarpa]
          Length = 1408

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 106/244 (43%), Gaps = 33/244 (13%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            +RY  LE  + Y+F + SLL +ALTH S +       Y+RLEFLGD +L  LI+  L+  
Sbjct: 1155 VRY--LESLLNYSFRDPSLLVEALTHGSYMLPEIPSCYQRLEFLGDAVLDYLITMHLYKE 1212

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVC------------- 108
            +     G L+   ++ V+ +  +Q A + DL   I   S DL K +              
Sbjct: 1213 YPGMSPGLLTDLRSASVNNDCYAQSAVKGDLHKHILHTSQDLHKHIVETAEIFQKSSLGS 1272

Query: 109  -------SFMTSIQADVVESLIAALYLDGGIEVAGTFVD-KYWKQRALKSGKFRRDAKTE 160
                   +    +  DV+ESL  A+ +D G      F   +   +  +     R     E
Sbjct: 1273 TFGWESETSFPKVLGDVIESLAGAILVDSGYNKEIVFQSIRPLLEPLITPATVRLHPARE 1332

Query: 161  LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA---PAQGMDCSKRAAEQVAAA 217
            L E    +     +YK +  S    +   T+VV  +G+     A   D  K+ A+++A+ 
Sbjct: 1333 LSELCQKQHF---DYKKSVVSYNGRNASITIVVGANGVTFKHTATAAD--KKTAKKLASK 1387

Query: 218  EVLK 221
            EVLK
Sbjct: 1388 EVLK 1391


>gi|254423613|ref|ZP_05037331.1| ribonuclease III [Synechococcus sp. PCC 7335]
 gi|196191102|gb|EDX86066.1| ribonuclease III [Synechococcus sp. PCC 7335]
          Length = 263

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 94/199 (47%), Gaps = 7/199 (3%)

Query: 22  LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
           LLE AL    IS S  ++ E+LEFLGD  L L  +  L   +     G++S   + +VS 
Sbjct: 52  LLELALV--DISSSATQNNEKLEFLGDAALRLAAAEFLMERYPQMALGDMSAVRSQIVSD 109

Query: 82  ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIEVAGTFVD 140
            T + +A+   L  ++ +S     D     + + AD  E+++ ALYL  G + +   ++D
Sbjct: 110 RTLATLAKRYHLRRYLILSKSAAGDKAGTDSRL-ADTFEAILGALYLSAGNLSLIRPWLD 168

Query: 141 KYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISG 197
            ++ +  ++L+S   R++ K  LQE   + +   P YKV+  S    D  RF        
Sbjct: 169 PHFARLTQSLRSDPARQNYKAALQELTQSHYKSLPTYKVSEISQIHGDEERFQAEAWFQD 228

Query: 198 LAPAQGMDCSKRAAEQVAA 216
                G   S + AEQ AA
Sbjct: 229 KLWGTGKGRSMKMAEQAAA 247


>gi|167046036|gb|ABZ10549.1| dicer 1 [Nematostella vectensis]
          Length = 412

 Score = 61.6 bits (148), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 81/169 (47%), Gaps = 33/169 (19%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFN 61
           A++    E RIGY F+N+  L +ALTH+S S +   + Y+RLEFLGD +L  L++ L+++
Sbjct: 236 AVQLQGFENRIGYEFSNKLYLIQALTHASYSQNRLTDCYQRLEFLGDALLDFLVTELIYS 295

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDL-ASFIRVSSDLRKDVCSFMTSIQ----- 115
              +   GEL+    +LV+    +++A +     S  ++S +    +  F+  ++     
Sbjct: 296 RNTNLDPGELTDLRQALVNNNIFAEIAVKHGFNKSLFQMSPEWFNKIGVFVDHVKEREAR 355

Query: 116 --------------------------ADVVESLIAALYLDGGIEVAGTF 138
                                      D+ ES+  A++LD G+++  T+
Sbjct: 356 GIQISKDPFLTLSNDDEEGIEAPKVLGDIFESVAGAIFLDSGMDLVLTW 404



 Score = 39.7 bits (91), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 6/102 (5%)

Query: 22  LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
           LL +ALT  S   ++    ERLE LGD  L   +S  L+  +    EG+L+ R  S +S 
Sbjct: 19  LLLQALTTKSAGDAF--DLERLEMLGDAFLKQAVSIFLYCCYKDGDEGKLTKRKTSQLSN 76

Query: 82  ETCSQVARELDLASFIRVSSDLRKDVCSFMT-SIQADVVESL 122
               +VA  L L  +++   + + D  S+ T S+QA  VE +
Sbjct: 77  RALYRVACRLGLPEYLQ---NTQLDRVSWTTPSLQAAEVEPV 115


>gi|157120736|ref|XP_001659747.1| dicer-1 [Aedes aegypti]
 gi|108883036|gb|EAT47261.1| dicer-1 [Aedes aegypti]
          Length = 2193

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 67/259 (25%), Positives = 111/259 (42%), Gaps = 55/259 (21%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            YS  E  +GY F +RS L +A+TH+S   +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1937 YSAFEDSLGYQFTDRSYLLQAMTHASYCPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1996

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELD---------------LASFIRVSSD------- 102
                G L+   ++LV+    + +A   D               +  F+R+  D       
Sbjct: 1997 QHSPGALTDLRSALVNNTIFASLAVRHDFHKYFRHLSPGLNDVIDRFVRIQQDNGHIISE 2056

Query: 103  ----LRKDVCSFMTSIQ-----ADVVESLIAALYLDGGIEVAGTFVDKYWK-QRALKSGK 152
                + +D C     ++      DV ES+  A++LD  +      +D  WK  R++   +
Sbjct: 2057 EYYLISEDECDEAEDVEVPKALGDVFESVAGAIFLDSNMS-----LDAVWKVYRSMMGPE 2111

Query: 153  FRRDA----KTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203
              + +    K+ ++E        AKFG  PE     R       R  V VE+ G    +G
Sbjct: 2112 IEQFSNSVPKSPIRELLELEPETAKFG-KPEKLADGR-------RVRVTVEVFGKGTFRG 2163

Query: 204  MDCSKRAAEQVAAAEVLKR 222
            +  + R A+  AA   L++
Sbjct: 2164 IGRNYRIAKCTAAKCALRQ 2182


>gi|157167186|ref|XP_001652212.1| dicer-1 [Aedes aegypti]
 gi|108877338|gb|EAT41563.1| dicer-1 [Aedes aegypti]
          Length = 1658

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 100/225 (44%), Gaps = 41/225 (18%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHF 63
             Y  +E  +GY F +R+ L +ALTH+S  ++    SY++LEFLGD +L  LIS  +F   
Sbjct: 1400 NYRRIESILGYKFKDRTYLLQALTHASYPTNRITGSYQQLEFLGDAVLDFLISMYIFEQN 1459

Query: 64   DSAKEGELSVRFNSLVSAET--CSQVARELDL------ASFIRVSSDL------------ 103
             +   G+L+   ++LV+  T  C  V   L L      ASF    S              
Sbjct: 1460 PTMSPGQLTDLRSALVNNVTLACILVRHGLHLYILAESASFTDTVSKFVLFQEQNKHEIT 1519

Query: 104  ----------RKDVCSFMTSIQA--DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151
                       + +  F+   +A  DV ESL+AA++LD G + A T+   Y     +   
Sbjct: 1520 DQVNLLVEESDRKMAEFVDVPKALGDVFESLVAAVFLDSGNDFAATWQVIY----GMMGN 1575

Query: 152  KFRRDAKTELQEWAHAKFGVTPEYKVTF-RSGPDHDPRFTVVVEI 195
            +     +    +     +   P  K TF R+ PD D   TV+V++
Sbjct: 1576 EILTFTENTPIQIVRQLYEFKPSCKPTFSRAIPDED---TVLVKL 1617


>gi|67525463|ref|XP_660793.1| hypothetical protein AN3189.2 [Aspergillus nidulans FGSC A4]
 gi|40743766|gb|EAA62953.1| hypothetical protein AN3189.2 [Aspergillus nidulans FGSC A4]
          Length = 1726

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 50/79 (63%), Gaps = 1/79 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNH 62
            ++   LE  IGY F +++LL +ALTH S  +    +SY+RLEFLGD +L +LI  L+  H
Sbjct: 1351 IQQENLENHIGYTFKDKTLLMEALTHPSCPYDTSIQSYQRLEFLGDAVLDMLIVDLIRAH 1410

Query: 63   FDSAKEGELSVRFNSLVSA 81
                ++GE++   +++V+ 
Sbjct: 1411 HVECQQGEMTKIKHAIVNG 1429



 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 15/131 (11%)

Query: 40   YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI-- 97
            Y+R EF GD +L   ++  LF +  +  EG L+   ++LV     ++ A +  L ++I  
Sbjct: 1205 YQRYEFFGDSVLKFTVAASLFYNNPNWHEGYLTETLHALVQNARLTRAALDQGLDAYIIS 1264

Query: 98   -----------RVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
                        +S  L       S    + ADVVE+LI A Y+DGG+  A + + ++  
Sbjct: 1265 NRFTPRKWSAPLISEKLYASASTRSMSAKVLADVVEALIGAAYIDGGLHKAQSCIVRFLP 1324

Query: 145  QRALKSGKFRR 155
            +  L   K  R
Sbjct: 1325 EIELPETKLPR 1335


>gi|294463153|gb|ADE77113.1| unknown [Picea sitchensis]
          Length = 173

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 77/141 (54%), Gaps = 20/141 (14%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S LE  + Y F ++SLL++A+THSS +++  ESYE+LEF+GD +LG L++  L+  +   
Sbjct: 20  SELEDILKYKFKSKSLLKEAITHSSNNNT--ESYEKLEFVGDSVLGYLVTKHLYCAYPKL 77

Query: 67  KEGELSVRFNSLVSAETCSQVARE--------LDLASFIRVSSDLRKDV--------CSF 110
            +G L++  +  V  E  ++V  +        L+  +  ++  D  KD+        C  
Sbjct: 78  YQGTLTLLRSRNVDTEKFARVCVKHKFHQYLLLNAPALQQIIEDFVKDIEDESKSFRCGD 137

Query: 111 M--TSIQADVVESLIAALYLD 129
                + AD+VES+  A+++D
Sbjct: 138 FKPPKVLADIVESIAGAVFVD 158


>gi|254281220|ref|NP_001123390.2| endoribonuclease Dicer [Xenopus (Silurana) tropicalis]
 gi|238064965|sp|B3DLA6|DICER_XENTR RecName: Full=Endoribonuclease Dicer
 gi|169261418|gb|ACA52289.1| endoribonuclease [Xenopus tropicalis]
          Length = 1893

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 102/252 (40%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S  + +  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1637 FENFEKKINYPFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1696

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-------------------------V 99
                G L+   ++LV+    + +A + D   + +                         +
Sbjct: 1697 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAISPELFHVIDDFVQFQLEKNEMQGM 1756

Query: 100  SSDLRKD-------VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149
             S+LR+            +     D+ ESL  A+Y+D G+ +   +   Y   + L    
Sbjct: 1757 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWHVYYPMMQPLIEKF 1816

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1817 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1869

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1870 IAKSAAARRALR 1881



 Score = 38.9 bits (89), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 18   ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
             N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS
Sbjct: 1269 PNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLS 1321


>gi|188593364|emb|CAO78751.1| Oikopleura cytoplasmic RNAse III enzyme Dicer [Oikopleura dioica]
          Length = 1814

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 81/190 (42%), Gaps = 53/190 (27%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y   EK+IGY F N+  L ++LTH+S  ++     Y+RLEFLGD +L  LI+  LF+H  
Sbjct: 1544 YGEFEKKIGYTFKNKGYLLQSLTHASYQYNQVTNCYQRLEFLGDAVLDFLITRHLFDHPT 1603

Query: 65   SA-KEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDL-------------RKDVCS 109
                 GEL+    +LV+    + +A + D   ++  ++ DL             R+DV  
Sbjct: 1604 KRFSPGELTDLRAALVNNNIFAALAVKFDFHKYLYALTPDLHNVIRDYVLYCQTRQDVEG 1663

Query: 110  F---------------------------MTSIQADVVESLIAALYLDGGIEVAGT----- 137
                                        +  +  D+ ES+  A+YLD G+ +        
Sbjct: 1664 MEAVLKRIRLEEEPEEEEGDHEDSEDIEVPKVLGDIYESVAGAIYLDSGMNLDAVWGVYR 1723

Query: 138  -----FVDKY 142
                 ++DKY
Sbjct: 1724 PMLQKYIDKY 1733


>gi|307169911|gb|EFN62420.1| Endoribonuclease Dcr-1 [Camponotus floridanus]
          Length = 506

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 71/157 (45%), Gaps = 34/157 (21%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           +E +IGY F NR+ L +A TH S + +   E Y+RLEFLGD IL  LI+  ++    +  
Sbjct: 254 METKIGYKFNNRAFLLQAFTHPSYTPNVITECYQRLEFLGDAILDFLITCYIYETCGNLS 313

Query: 68  EGELSVRFNSLVSAET--CSQVARELDLA-------------SFIRVSSDLRKDV----- 107
            G L+   ++LV+  T  C  V   LD A              F++   +    V     
Sbjct: 314 PGHLTDLRSALVNNITFACLAVRYGLDTALLSYAPKLHEAIDRFVKFQQERNYVVNDELL 373

Query: 108 --------CSF-----MTSIQADVVESLIAALYLDGG 131
                   C+      +  +  D+ ESLI A+YLD G
Sbjct: 374 WVLLEEEECNLAEYVDVPKVLGDLFESLIGAIYLDSG 410


>gi|37522217|ref|NP_925594.1| ribonuclease III [Gloeobacter violaceus PCC 7421]
 gi|35213217|dbj|BAC90589.1| ribonuclease III [Gloeobacter violaceus PCC 7421]
          Length = 242

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 91/200 (45%), Gaps = 11/200 (5%)

Query: 22  LLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
           LL +AL H S S     E  +RLEFLGD IL LL +  L+        GE++   + LVS
Sbjct: 33  LLHRALIHPSWSAQEGGEDNDRLEFLGDEILRLLAAEFLYRADPELTVGEMTAVRSVLVS 92

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIEVAGTFV 139
               +++A   DL  F+ V      D    +T + AD  E++I ALYL  G + +   ++
Sbjct: 93  DVALAELAEGYDLGEFLVVGRSASGDERGRITRL-ADGFEAVIGALYLSTGDLGLIRPWL 151

Query: 140 DKYWKQRA--LKSGKFRRDAKTELQEWAHA-KFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
             +    A  + +   R + K+ LQE       G  PEY++      D  P F   V   
Sbjct: 152 LPHLAHLAESVMADPTRGNHKSALQELTQKLAAGELPEYRLV-----DPGPPFRYEVWAL 206

Query: 197 GLAPAQGMDCSKRAAEQVAA 216
           G     G   SK+ A+Q AA
Sbjct: 207 GRLWGSGEGPSKKLAQQRAA 226


>gi|120437705|ref|YP_863391.1| ribonuclease III [Gramella forsetii KT0803]
 gi|117579855|emb|CAL68324.1| ribonuclease III [Gramella forsetii KT0803]
          Length = 243

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 73/130 (56%), Gaps = 10/130 (7%)

Query: 16  AFANRSLL--EKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
            F  +S+L  +KA TH S++   ++    ++ER+EFLGD +L  ++++ LF       EG
Sbjct: 27  GFKPKSILHYKKAFTHRSLNRRDEDGNAINFERMEFLGDAMLSAVVASHLFKAVPGGNEG 86

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
            L+   + +VS +  +++ ++L L     V +++ KD   F  +I  ++ E+L+ A+YLD
Sbjct: 87  YLTKMRSKVVSRKHLNELGKDLGLIE--HVQTNIPKD--QFGVNIHGNLFEALVGAIYLD 142

Query: 130 GGIEVAGTFV 139
            G +    F+
Sbjct: 143 RGYKHCKRFI 152


>gi|63054443|ref|NP_588215.2| dicer [Schizosaccharomyces pombe 972h-]
 gi|1351642|sp|Q09884|DCR1_SCHPO RecName: Full=Protein Dicer; AltName: Full=Cell cycle control protein
            dcr1; AltName: Full=RNA interference pathway protein
            dcr1; Includes: RecName: Full=Endoribonuclease dcr1;
            Includes: RecName: Full=ATP-dependent helicase dcr1
 gi|157310516|emb|CAB41233.2| dicer [Schizosaccharomyces pombe]
          Length = 1374

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 73/153 (47%), Gaps = 25/153 (16%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            S +E+ IGY+F N+ LL  A  H S+       E+Y++LEFLGD +L  +I   L+  + 
Sbjct: 1084 SYIEETIGYSFKNKKLLHLAFIHPSMMSQQGIYENYQQLEFLGDAVLDYIIVQYLYKKYP 1143

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQA------- 116
            +A  GEL+   +  V  ++ S +   L+L  +I+  S    D +  +   I+A       
Sbjct: 1144 NATSGELTDYKSFYVCNKSLSYIGFVLNLHKYIQHESAAMCDAIFEYQELIEAFRETASE 1203

Query: 117  ---------------DVVESLIAALYLDGGIEV 134
                           D +E++I A++LD G  +
Sbjct: 1204 NPWFWFEIDSPKFISDTLEAMICAIFLDSGFSL 1236



 Score = 35.8 bits (81), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 18/114 (15%)

Query: 40   YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASF-IR 98
            Y+RLEF GD  L L  S  +F  F   +E +L      ++S     +VA + +L  + + 
Sbjct: 929  YDRLEFYGDCFLKLGASITVFLKFPDTQEYQLHFNRKKIISNCNLYKVAIDCELPKYALS 988

Query: 99   VSSDLRK-----------DVCSFMT----SIQ--ADVVESLIAALYLDGGIEVA 135
               ++R            D C +      S++  AD+VE+ I A  LD G++ A
Sbjct: 989  TPLEIRHWCPYGFQKSTSDKCRYAVLQKLSVKRIADMVEASIGACLLDSGLDSA 1042


>gi|57236096|gb|AAW48725.1| dicer-2 [Aedes aegypti]
          Length = 1658

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 100/225 (44%), Gaps = 41/225 (18%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHF 63
             Y  +E  +GY F +R+ L +ALTH+S  ++    SY++LEFLGD +L  LIS  +F   
Sbjct: 1400 NYRRIEGILGYKFKDRTYLLQALTHASYPTNRITGSYQQLEFLGDAVLDFLISMYIFEQN 1459

Query: 64   DSAKEGELSVRFNSLVSAET--CSQVARELDL------ASFIRVSSDL------------ 103
             +   G+L+   ++LV+  T  C  V   L L      ASF    S              
Sbjct: 1460 PTMSPGQLTDLRSALVNNVTLACILVRHGLHLYILAESASFTDTVSKFVLFQEQHKHEIT 1519

Query: 104  ----------RKDVCSFMTSIQA--DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151
                       + +  F+   +A  DV ESL+AA++LD G + A T+   Y     +   
Sbjct: 1520 DQVNLLVEESDRKMAEFVDVPKALGDVFESLVAAVFLDSGNDFAATWQVIY----GMMGN 1575

Query: 152  KFRRDAKTELQEWAHAKFGVTPEYKVTF-RSGPDHDPRFTVVVEI 195
            +     +    +     +   P  K TF R+ PD D   TV+V++
Sbjct: 1576 EILTFTENTPIQIVRQLYEFKPSCKPTFSRAIPDED---TVLVKL 1617


>gi|259485853|tpe|CBF83228.1| TPA: Dicer-like protein 2 [Includes Endoribonuclease dcl2(EC
           3.1.26.-);ATP-dependent helicase dcl2(EC 3.6.1.-)]
           [Source:UniProtKB/Swiss-Prot;Acc:P0C5H7] [Aspergillus
           nidulans FGSC A4]
          Length = 1269

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 50/79 (63%), Gaps = 1/79 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNH 62
           ++   LE  IGY F +++LL +ALTH S  +    +SY+RLEFLGD +L +LI  L+  H
Sbjct: 894 IQQENLENHIGYTFKDKTLLMEALTHPSCPYDTSIQSYQRLEFLGDAVLDMLIVDLIRAH 953

Query: 63  FDSAKEGELSVRFNSLVSA 81
               ++GE++   +++V+ 
Sbjct: 954 HVECQQGEMTKIKHAIVNG 972



 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 15/131 (11%)

Query: 40  YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI-- 97
           Y+R EF GD +L   ++  LF +  +  EG L+   ++LV     ++ A +  L ++I  
Sbjct: 748 YQRYEFFGDSVLKFTVAASLFYNNPNWHEGYLTETLHALVQNARLTRAALDQGLDAYIIS 807

Query: 98  -----------RVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
                       +S  L       S    + ADVVE+LI A Y+DGG+  A + + ++  
Sbjct: 808 NRFTPRKWSAPLISEKLYASASTRSMSAKVLADVVEALIGAAYIDGGLHKAQSCIVRFLP 867

Query: 145 QRALKSGKFRR 155
           +  L   K  R
Sbjct: 868 EIELPETKLPR 878


>gi|158706440|sp|P0C5H7|DCL2_EMENI RecName: Full=Dicer-like protein 2; Includes: RecName:
            Full=Endoribonuclease dcl2; Includes: RecName:
            Full=ATP-dependent helicase dcl2
          Length = 1429

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 50/79 (63%), Gaps = 1/79 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNH 62
            ++   LE  IGY F +++LL +ALTH S  +    +SY+RLEFLGD +L +LI  L+  H
Sbjct: 1054 IQQENLENHIGYTFKDKTLLMEALTHPSCPYDTSIQSYQRLEFLGDAVLDMLIVDLIRAH 1113

Query: 63   FDSAKEGELSVRFNSLVSA 81
                ++GE++   +++V+ 
Sbjct: 1114 HVECQQGEMTKIKHAIVNG 1132



 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 15/131 (11%)

Query: 40   YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI-- 97
            Y+R EF GD +L   ++  LF +  +  EG L+   ++LV     ++ A +  L ++I  
Sbjct: 908  YQRYEFFGDSVLKFTVAASLFYNNPNWHEGYLTETLHALVQNARLTRAALDQGLDAYIIS 967

Query: 98   -----------RVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
                        +S  L       S    + ADVVE+LI A Y+DGG+  A + + ++  
Sbjct: 968  NRFTPRKWSAPLISEKLYASASTRSMSAKVLADVVEALIGAAYIDGGLHKAQSCIVRFLP 1027

Query: 145  QRALKSGKFRR 155
            +  L   K  R
Sbjct: 1028 EIELPETKLPR 1038


>gi|223944141|gb|ACN26154.1| unknown [Zea mays]
          Length = 206

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 4/121 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTL 58
           MSA   + +E  +GY F ++SL+E ALTH S    +   ++YERLE+LGD +L  L+S  
Sbjct: 43  MSAKDVTAIEALLGYCFIDKSLVELALTHGSFYWPNRPGDTYERLEYLGDGVLTCLMSRE 102

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV--CSFMTSIQA 116
           +F  + + + G L+    + V  E  ++VA    L  F+R  +   +D   C+ +   Q 
Sbjct: 103 VFRTYRTLQPGPLTRLRAANVDTEKLARVAVHRGLHRFLRHKAPKLQDQKKCANIQFTQM 162

Query: 117 D 117
           D
Sbjct: 163 D 163


>gi|313236326|emb|CBY11646.1| unnamed protein product [Oikopleura dioica]
          Length = 1519

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 81/190 (42%), Gaps = 53/190 (27%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y   EK+IGY F N+  L ++LTH+S  ++     Y+RLEFLGD +L  LI+  LF+H  
Sbjct: 1249 YGEFEKKIGYTFKNKGYLLQSLTHASYQYNQVTNCYQRLEFLGDAVLDFLITRHLFDHPT 1308

Query: 65   SA-KEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDL-------------RKDVCS 109
                 GEL+    +LV+    + +A + D   ++  ++ DL             R+DV  
Sbjct: 1309 KRFSPGELTDLRAALVNNNIFAALAVKFDFHKYLYALTPDLHNVIRDYVLYCQTRQDVEG 1368

Query: 110  F---------------------------MTSIQADVVESLIAALYLDGGIEVAGT----- 137
                                        +  +  D+ ES+  A+YLD G+ +        
Sbjct: 1369 MEAVLKRIRLEEEPEEEEGDHEDSEDIEVPKVLGDIYESVAGAIYLDSGMNLDAVWGVYR 1428

Query: 138  -----FVDKY 142
                 ++DKY
Sbjct: 1429 PMLQKYIDKY 1438


>gi|326693698|ref|ZP_08230703.1| ribonuclease III [Leuconostoc argentinum KCTC 3773]
          Length = 240

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 89/202 (44%), Gaps = 8/202 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           L       F +  LL +ALT  +  + +       Y+RLEFLGD ++ + ++  LF  + 
Sbjct: 17  LRTEFNIVFHDEDLLLEALTQRNYLNEHPNEPGRDYQRLEFLGDSVMQVSVAEYLFKRYP 76

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EG+L+    ++V   + +  +R + L   +R+             S+  D+ E+ I 
Sbjct: 77  NWHEGQLTEMRIAMVQTRSFAHFSRLVHLNEAVRLGKGEEMSGARERDSLLEDIWEAFIG 136

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182
           ALYLD G +    F+++     A+ +G F R  D K+ LQE       V  +Y+      
Sbjct: 137 ALYLDQGADAVQEFLERTLFA-AIDTGFFDRFIDFKSRLQEKLQVNGAVVIDYQTEREQA 195

Query: 183 -PDHDPRFTVVVEISGLAPAQG 203
             D    F   V + G   A+G
Sbjct: 196 MADKTQVFEASVSVDGHELARG 217


>gi|242076428|ref|XP_002448150.1| hypothetical protein SORBIDRAFT_06g022180 [Sorghum bicolor]
 gi|241939333|gb|EES12478.1| hypothetical protein SORBIDRAFT_06g022180 [Sorghum bicolor]
          Length = 698

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 76/164 (46%), Gaps = 26/164 (15%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  S LE+ IGY F ++ LL +A  H S +      Y+R+EFLGD +L  L+++ L+
Sbjct: 247 MNYMNISELEELIGYTFKHKGLLLQAFVHPSFNKHSGGCYQRMEFLGDAVLDYLMASYLY 306

Query: 61  NHFDSAKEGELS------VRFNSLVSAETCSQVAREL------------DLASFIRVSSD 102
           + +   K G+L+      +  NS         + + L               +++ +SS 
Sbjct: 307 SAYPDLKPGQLTDLKSLALNNNSFAYVAVKKSIHKYLIKDSKSLTAAINKFQNYVNLSSS 366

Query: 103 LRKDVCSFMTS--IQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
             KD+    T   +  D+VES + A+ LD G       ++  WK
Sbjct: 367 -EKDLLEEPTCPKVLGDIVESCVGAVLLDSGFN-----LNHVWK 404


>gi|189908862|gb|ACE60552.1| dicer-like protein 2 [Brassica rapa]
          Length = 1392

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 77/151 (50%), Gaps = 25/151 (16%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            +RY  +E  + Y F ++SLL +ALTH S +       Y+RLEFLGD +L  LI+  L+  
Sbjct: 1148 VRY--MESLLNYKFKDKSLLVEALTHGSYMIPEIPRCYQRLEFLGDSVLDYLITKHLYGE 1205

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSF------MTSIQ 115
            + +   G L+   ++ V+ E  +QVA + +L   +   S DL K +         ++S+Q
Sbjct: 1206 YPNLSPGLLTDMRSASVNNECYAQVAVKSNLHKHVLHASHDLHKHISRTVSEFERLSSVQ 1265

Query: 116  A---------------DVVESLIAALYLDGG 131
            +               DV+ESL  A+++D G
Sbjct: 1266 SSFGWESEIAFPKVLGDVIESLAGAIHVDSG 1296


>gi|283131646|dbj|BAI63215.1| Dicer [Hemicentrotus pulcherrimus]
          Length = 1816

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 79/168 (47%), Gaps = 35/168 (20%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y   EK I Y F +R+ L +A THSS   +S  + Y+RLEFLGD +L  LI+  L++H  
Sbjct: 1562 YDGFEKTINYRFKDRAYLLQAFTHSSYHRNSITDCYQRLEFLGDALLDYLITRHLYDHHT 1621

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFMTSIQA------- 116
            +   G L+   ++LV+    + +A + +   + +  ++++ + + +F+T + A       
Sbjct: 1622 NLSPGALTDLRSALVNNTIFASLAVKFNFHKYFKAYTANMFQVIDNFVTFVDAKNEALGM 1681

Query: 117  --------------------------DVVESLIAALYLDGGIEVAGTF 138
                                      D+ ES+  A+YLD G+ +   +
Sbjct: 1682 DSQLKYSEMDGEQEESEDIEVPKALGDIFESVAGAIYLDSGMSLNAVW 1729


>gi|328871085|gb|EGG19456.1| hypothetical protein DFA_00033 [Dictyostelium fasciculatum]
          Length = 1106

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/102 (37%), Positives = 56/102 (54%), Gaps = 6/102 (5%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
           +SYERLEFLGD  L L+IS  L++ F   +EG LS     LV  E  +Q++++++L+  I
Sbjct: 887 DSYERLEFLGDAFLDLVISKHLYDQFPDKQEGFLSTARAGLVKNEALAQISQKINLSLAI 946

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
              SD       F      D++E+ I  L LD G+E    F+
Sbjct: 947 ---SDPH---IHFTVKRLGDLLEAFIGCLLLDCGMEKTKYFI 982



 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 66/142 (46%), Gaps = 26/142 (18%)

Query: 16  AFANRSLLEKALTHSS---ISHSYQESY-------------ERLEFLGDRILGLLISTLL 59
           +  N  LL +  TH S   I+    +SY             +RLEFLGD +L    +  L
Sbjct: 696 SIKNDLLLRQVFTHPSTKMINSLVPQSYNIFRDYLPFDGDNQRLEFLGDSVLKFCTTYYL 755

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR--VSSDLRKDVCSFMTSIQAD 117
           +  +   +EG+L+ + + + S           ++   +R  V+ D++K         +AD
Sbjct: 756 YFKYPQLREGQLTSKRSEITSNSYLLSKCERWNVVDLLRFTVTEDMKKP--------KAD 807

Query: 118 VVESLIAALYLDGGIEVAGTFV 139
           V+E++  AL+++ G++ A  F+
Sbjct: 808 VMEAIFGALFIERGVKEAYQFI 829


>gi|119487463|ref|XP_001262524.1| RNA helicase/RNAse III, putative [Neosartorya fischeri NRRL 181]
 gi|158705692|sp|A1D9Z6|DCL2_NEOFI RecName: Full=Dicer-like protein 2; Includes: RecName:
            Full=Endoribonuclease dcl2; Includes: RecName:
            Full=ATP-dependent helicase dcl2
 gi|119410681|gb|EAW20627.1| RNA helicase/RNAse III, putative [Neosartorya fischeri NRRL 181]
          Length = 1388

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 50/75 (66%), Gaps = 1/75 (1%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            L+  IGY F + SLL +ALTH S  + S  +SY+RLE+LGD +L ++I + +FNH     
Sbjct: 1101 LKDHIGYTFEDESLLVEALTHPSCDYDSTTQSYQRLEYLGDAVLDMVIVSAIFNHPIQRP 1160

Query: 68   EGELSVRFNSLVSAE 82
            +G+++   +++V+A 
Sbjct: 1161 QGDMTKIKHAVVNAN 1175



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 19/110 (17%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI- 97
            +Y+R EFLGD IL   +S  LF    +  EG LS     +V     ++ A +  L ++I 
Sbjct: 952  NYQRYEFLGDSILKFSVSCQLFFQHPNWHEGYLSEGRAMIVQNPRLAKAALDTGLDAYIV 1011

Query: 98   --RVSSDLRKDVCSFM--------------TSIQADVVESLIAALYLDGG 131
              R++S  RK     +              T + ADVVE+LI A Y+DGG
Sbjct: 1012 TKRIAS--RKWSAPLISEKLERVPAKRQMSTKVLADVVEALIGAAYMDGG 1059


>gi|302318908|ref|NP_001180543.1| dicer-2 [Bombyx mori]
 gi|300669733|dbj|BAJ11655.1| DICER-2 [Bombyx mori]
          Length = 1677

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 77/159 (48%), Gaps = 34/159 (21%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            + +EK + Y F + + L  AL+HSS I +    SYERLEFLGD I+  L+++ +F +   
Sbjct: 1424 TDVEKILNYTFKDSTFLLNALSHSSYIRNRLTSSYERLEFLGDAIIDFLVTSHIFENCRE 1483

Query: 66   AKEGELSVRFNSLVSAET--------------CSQVARELDLASF------IRVSSDLRK 105
             K GE++   ++LV+  T              CS++   L+ A        I  + ++  
Sbjct: 1484 LKPGEMTDLRSALVNNVTFAAYTVKLGLHKYLCSELNPSLEKAIMKFVEHQIERNHEIEF 1543

Query: 106  DVCSFMTSIQ-------------ADVVESLIAALYLDGG 131
            DV   ++ +              +D+ E+L+ A+YLD G
Sbjct: 1544 DVLLLISEVDCQVAEYVDVPKVLSDIFEALVGAVYLDSG 1582


>gi|255589974|ref|XP_002535144.1| dicer-1, putative [Ricinus communis]
 gi|223523936|gb|EEF27239.1| dicer-1, putative [Ricinus communis]
          Length = 259

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 23/158 (14%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +E+ + Y F NRSLLE+A T SS       SYERLE +GD +L LL +   +  + +   
Sbjct: 35  VEEILKYKFKNRSLLEEAFTDSSFPGKCF-SYERLEHVGDSVLNLLFTKEHYFKYPNLPP 93

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSD-LRKDVCSF----------------M 111
           G L+    + V  E  ++VA +     F+R     L + +  F                +
Sbjct: 94  GALTRLRAANVDTEKLARVAVKHGFHRFLRHKKPLLEEQIREFSQAILEYPLHSNGLVDV 153

Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK 149
             + AD+VES I A+++D     + + VD  WK+R LK
Sbjct: 154 PKVLADIVESAIGAVFID-----SNSSVDTVWKKRNLK 186


>gi|218196456|gb|EEC78883.1| hypothetical protein OsI_19246 [Oryza sativa Indica Group]
 gi|222630918|gb|EEE63050.1| hypothetical protein OsJ_17858 [Oryza sativa Japonica Group]
          Length = 350

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 32/162 (19%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +E+ + Y F +  LLE+ALTH S +     SY+RLEF+GD  LGL  S  L+    +   
Sbjct: 40  VERLLRYQFRDGRLLEEALTHQSFADD-AVSYQRLEFVGDSALGLAFSNFLYLTNPTLGP 98

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD--VCSFMTSIQ----------- 115
           G LS    + +S E  ++VA   DL   +R +   R D  V  F+ +++           
Sbjct: 99  GPLSTLRAANISTEKLARVAVRHDLYPLLRRNCP-RLDLLVGQFIETVKQEPEDDLSTVP 157

Query: 116 ------------ADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145
                       AD+VE++ AA+Y+D   +     ++K WK+
Sbjct: 158 YGGSVVKAPKVLADIVEAIAAAVYVDCKFD-----LEKLWKR 194


>gi|158706446|sp|Q4WA22|DCL2_ASPFU RecName: Full=Dicer-like protein 2; Includes: RecName:
            Full=Endoribonuclease dcl2; Includes: RecName:
            Full=ATP-dependent helicase dcl2
          Length = 1388

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 50/75 (66%), Gaps = 1/75 (1%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            L+  IGY F + SLL +ALTH S  + S  +SY+RLE+LGD +L ++I + +FNH     
Sbjct: 1101 LKDHIGYTFEDESLLVEALTHPSCDYDSTTQSYQRLEYLGDAVLDMVIVSAIFNHRIQRP 1160

Query: 68   EGELSVRFNSLVSAE 82
            +G+++   +++V+A 
Sbjct: 1161 QGDMTKIKHAVVNAN 1175



 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 67/144 (46%), Gaps = 19/144 (13%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI- 97
            +Y+R EFLGD IL   +S  LF    +  EG LS   + +V     ++ A +  L ++I 
Sbjct: 952  NYQRYEFLGDSILKFSVSCQLFFQHPNWHEGYLSEGRDMIVQNPRLAKAALDTGLDAYIV 1011

Query: 98   --RVSSDLRKDVCSFM--------------TSIQADVVESLIAALYLDGGIEVAGTFVDK 141
              R++S  RK     +              T + ADVVE+LI A Y+DGG   A   + +
Sbjct: 1012 TKRLAS--RKWSAPLISEKLGRVPAKRQMSTKVLADVVEALIGAAYVDGGHSTAQACIRR 1069

Query: 142  YWKQRALKSGKFRRDAKTELQEWA 165
            +  +  L +   R  A++   E A
Sbjct: 1070 FLPEINLHAVDTRTAARSVAPESA 1093


>gi|251765118|sp|Q6ATG6|RTL2_ORYSJ RecName: Full=Ribonuclease 3-like protein 2; AltName:
           Full=Ribonuclease III-like protein 2; Short=RNase
           III-like protein 2
          Length = 317

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 74/160 (46%), Gaps = 30/160 (18%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +E+ + Y F +  LLE+ALTH S +     SY+RLEF+GD  LGL  S  L+    +   
Sbjct: 40  VERLLRYQFRDGRLLEEALTHQSFADDAV-SYQRLEFVGDSALGLAFSNFLYLTNPTLGP 98

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIR----------------VSSDLRKDVCSF-- 110
           G LS    + +S E  ++VA   DL   +R                V  +   D+ +   
Sbjct: 99  GPLSTLRAANISTEKLARVAVRHDLYPLLRRNCPRLDLLVGQFIETVKQEPEDDLSTVPY 158

Query: 111 ------MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
                    + AD+VE++ AA+Y+D   +     ++K WK
Sbjct: 159 GGSVVKAPKVLADIVEAIAAAVYVDCKFD-----LEKLWK 193


>gi|40063138|gb|AAR37985.1| ribonuclease III [uncultured marine bacterium 561]
          Length = 149

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 59/119 (49%), Gaps = 8/119 (6%)

Query: 104 RKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR----RDAKT 159
           RK       SI AD VE++  A+ LD G + A   +  +W   AL  G+ +    +D+KT
Sbjct: 25  RKSGGRHRASILADTVEAIAGAMLLDAGYDNAAPVI-LHWFADAL--GELQVDGDKDSKT 81

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAA 217
            LQEW  A+    P Y +    GPDH   F VV  I G   A  G   S+R AEQ AA+
Sbjct: 82  LLQEWLQARNLPLPSYDLVSVEGPDHAQEFEVVCLIKGQKNAFSGRGSSRRNAEQQAAS 140


>gi|198421916|ref|XP_002122382.1| PREDICTED: similar to rCG20888 [Ciona intestinalis]
          Length = 2053

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 64/270 (23%), Positives = 106/270 (39%), Gaps = 67/270 (24%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            S  E++I Y F N++ L +A TH+S  + +  + Y+RLEFLGD +L  LI+  LFN    
Sbjct: 1788 SGFERKINYTFKNKAYLLQAFTHASYYYNTVTDCYQRLEFLGDAVLDFLITRHLFNDERH 1847

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ--------- 115
               G L+   ++LV+    + +A   D   + + +S +L   +  F+   Q         
Sbjct: 1848 HSPGALTDLRSALVNNTIFASLAVHYDFHKYFKSISPELHHIIEDFVMYQQKQEDAQGMD 1907

Query: 116  ------------------------------------ADVVESLIAALYLDGGIEVAGTFV 139
                                                 D+ ES+  A+Y+D G++++    
Sbjct: 1908 AHLMRDYDRVEIVAPSSLEKDEEEGENEDVEVPKALGDIFESVAGAIYMDSGMDLSSV-- 1965

Query: 140  DKYWKQRALK--------SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
               WK  ++         S    R    EL E       + PE      +   +D +  V
Sbjct: 1966 ---WKVYSVMMLPLIEKFSACVPRSPVRELLE-------MEPETAKFSCAEKRYDGKVRV 2015

Query: 192  VVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             VEI G    +G+  S R A+  AA   L+
Sbjct: 2016 TVEIIGKGRFKGVGRSYRIAKSAAARRALR 2045



 Score = 36.2 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 2/73 (2%)

Query: 22   LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
            L+ +ALT S+ S  +  + ERLE LGD  L   ++  L+  +  + EG+LS   +  VS 
Sbjct: 1460 LILQALTLSNASDGF--NLERLEMLGDSFLKHAVTVYLYCTYPESHEGKLSYMRSKKVSN 1517

Query: 82   ETCSQVARELDLA 94
                ++ ++  LA
Sbjct: 1518 YNLYRIGKQFGLA 1530


>gi|159122296|gb|EDP47418.1| RNA helicase/RNAse III, putative [Aspergillus fumigatus A1163]
          Length = 1384

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 50/75 (66%), Gaps = 1/75 (1%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            L+  IGY F + SLL +ALTH S  + S  +SY+RLE+LGD +L ++I + +FNH     
Sbjct: 1097 LKDHIGYTFEDESLLVEALTHPSCDYDSTTQSYQRLEYLGDAVLDMVIVSAIFNHRIQRP 1156

Query: 68   EGELSVRFNSLVSAE 82
            +G+++   +++V+A 
Sbjct: 1157 QGDMTKIKHAVVNAN 1171



 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 67/144 (46%), Gaps = 19/144 (13%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI- 97
            +Y+R EFLGD IL   +S  LF    +  EG LS   + +V     ++ A +  L ++I 
Sbjct: 948  NYQRYEFLGDSILKFSVSCQLFFQHPNWHEGYLSEGRDMIVQNPRLAKAALDTGLDAYIV 1007

Query: 98   --RVSSDLRKDVCSFM--------------TSIQADVVESLIAALYLDGGIEVAGTFVDK 141
              R++S  RK     +              T + ADVVE+LI A Y+DGG   A   + +
Sbjct: 1008 TKRLAS--RKWSAPLISEKLERVPAKRQMSTKVLADVVEALIGAAYVDGGHSTAQACIRR 1065

Query: 142  YWKQRALKSGKFRRDAKTELQEWA 165
            +  +  L +   R  A++   E A
Sbjct: 1066 FLPEINLHAVDTRTAARSVAPESA 1089


>gi|313675278|ref|YP_004053274.1| RNAse iii [Marivirga tractuosa DSM 4126]
 gi|312941976|gb|ADR21166.1| RNAse III [Marivirga tractuosa DSM 4126]
          Length = 243

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 70/131 (53%), Gaps = 7/131 (5%)

Query: 13  IGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +GY      L      HSS++    + ++ S ERLE+LGD ILG +++  LF  +    E
Sbjct: 27  VGYKPFRLELFRLVTQHSSVAKTLPNGFRASNERLEYLGDAILGAVVADYLFKKYPFKDE 86

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G L+   + +V+ E+ S +A+++ ++  +   SD  +    F  SI  D++E+ I A+Y+
Sbjct: 87  GFLTEIRSRIVNRESLSLLAKKIGISQML--ESDFSRSRYHF-KSIYGDMMEAFIGAVYI 143

Query: 129 DGGIEVAGTFV 139
           D G +    F+
Sbjct: 144 DRGYKYCQKFI 154


>gi|70981901|ref|XP_746479.1| RNA helicase/RNAse III [Aspergillus fumigatus Af293]
 gi|66844102|gb|EAL84441.1| RNA helicase/RNAse III, putative [Aspergillus fumigatus Af293]
          Length = 1384

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 50/75 (66%), Gaps = 1/75 (1%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            L+  IGY F + SLL +ALTH S  + S  +SY+RLE+LGD +L ++I + +FNH     
Sbjct: 1097 LKDHIGYTFEDESLLVEALTHPSCDYDSTTQSYQRLEYLGDAVLDMVIVSAIFNHRIQRP 1156

Query: 68   EGELSVRFNSLVSAE 82
            +G+++   +++V+A 
Sbjct: 1157 QGDMTKIKHAVVNAN 1171



 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 67/144 (46%), Gaps = 19/144 (13%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI- 97
            +Y+R EFLGD IL   +S  LF    +  EG LS   + +V     ++ A +  L ++I 
Sbjct: 948  NYQRYEFLGDSILKFSVSCQLFFQHPNWHEGYLSEGRDMIVQNPRLAKAALDTGLDAYIV 1007

Query: 98   --RVSSDLRKDVCSFM--------------TSIQADVVESLIAALYLDGGIEVAGTFVDK 141
              R++S  RK     +              T + ADVVE+LI A Y+DGG   A   + +
Sbjct: 1008 TKRLAS--RKWSAPLISEKLGRVPAKRQMSTKVLADVVEALIGAAYVDGGHSTAQACIRR 1065

Query: 142  YWKQRALKSGKFRRDAKTELQEWA 165
            +  +  L +   R  A++   E A
Sbjct: 1066 FLPEINLHAVDTRTAARSVAPESA 1089


>gi|78126079|dbj|BAE47000.1| ribonuclease III [Ehrlichia ruminantium]
          Length = 92

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 51/90 (56%)

Query: 86  QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145
           ++A+ ++L  FI +S   R    +  ++   + +E+LI A+YLDGG++ A  F+  +WK 
Sbjct: 3   EIAQSINLGIFIIMSDGERSCGGANNSNNLENALEALIGAIYLDGGLKAAKDFIFLFWKN 62

Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
            A       +DAKT LQEWA +K    P Y
Sbjct: 63  SATHMKVPPQDAKTILQEWAQSKGFPAPSY 92


>gi|115462923|ref|NP_001055061.1| Os05g0271300 [Oryza sativa Japonica Group]
 gi|50878449|gb|AAT85223.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|55908895|gb|AAV67838.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578612|dbj|BAF16975.1| Os05g0271300 [Oryza sativa Japonica Group]
          Length = 344

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 32/162 (19%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +E+ + Y F +  LLE+ALTH S +     SY+RLEF+GD  LGL  S  L+    +   
Sbjct: 34  VERLLRYQFRDGRLLEEALTHQSFADD-AVSYQRLEFVGDSALGLAFSNFLYLTNPTLGP 92

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD--VCSFMTSIQ----------- 115
           G LS    + +S E  ++VA   DL   +R +   R D  V  F+ +++           
Sbjct: 93  GPLSTLRAANISTEKLARVAVRHDLYPLLRRNCP-RLDLLVGQFIETVKQEPEDDLSTVP 151

Query: 116 ------------ADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145
                       AD+VE++ AA+Y+D   +     ++K WK+
Sbjct: 152 YGGSVVKAPKVLADIVEAIAAAVYVDCKFD-----LEKLWKR 188


>gi|290989569|ref|XP_002677410.1| hypothetical protein NAEGRDRAFT_48963 [Naegleria gruberi]
 gi|284091017|gb|EFC44666.1| hypothetical protein NAEGRDRAFT_48963 [Naegleria gruberi]
          Length = 1214

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 6/125 (4%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            LE+ IGY F N       L H S+   +  +YE LEF+GD +L L +S  +F++F    +
Sbjct: 1026 LERIIGYKFKNILYAYYTLIHPSVDIGFNVNYETLEFVGDAVLDLYVSRTMFHNF-YLDQ 1084

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
             E+    ++ V      ++A++  +   + V  DL+    S      +DV+E+LI A+ L
Sbjct: 1085 SEMHTFRSNFVRNTALEKIAKDFRIDQLLFVKKDLKLKAKSI-----SDVMEALIGAVAL 1139

Query: 129  DGGIE 133
            D  ++
Sbjct: 1140 DSNLD 1144



 Score = 34.7 bits (78), Expect = 9.1,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 21/125 (16%)

Query: 16  AFANRSLLEKALTHSSISHSYQESYERLEFLGDRIL--GLLISTLLFNHFDSAK--EGEL 71
            + N S L  A+TH + S +   +YER EF GD IL   +++  +L   F++ K    E 
Sbjct: 850 GYINLSELRNAITHRT-SQNLDTNYERYEFFGDTILKYAVVLDIVLRFPFENMKFYNEEK 908

Query: 72  SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS------------IQADVV 119
           + +    VS     ++A++L +  F   +     +V     S            ++AD++
Sbjct: 909 TAK----VSNSNLRKLAQKLSIMDFFIETQYYHHNVAGIAFSKSEQEASVKGKKVRADII 964

Query: 120 ESLIA 124
           ESLI 
Sbjct: 965 ESLIG 969


>gi|170033786|ref|XP_001844757.1| endoribonuclease Dcr-1 [Culex quinquefasciatus]
 gi|167874834|gb|EDS38217.1| endoribonuclease Dcr-1 [Culex quinquefasciatus]
          Length = 2270

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 60/124 (48%), Gaps = 1/124 (0%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            YS  E  +GY F +RS L +A+TH+S   +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 2014 YSAFEDSLGYRFQDRSYLLQAMTHASYCPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2073

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
                G L+   ++LV+    + +A   D   + R  S    DV      IQ D   S+  
Sbjct: 2074 QHSPGALTDLRSALVNNTIFASLAVRHDFHKYFRHLSPGLNDVIDRFVRIQQDNGHSISE 2133

Query: 125  ALYL 128
              YL
Sbjct: 2134 EYYL 2137


>gi|37266499|gb|AAQ90464.1| Dicer1 [Danio rerio]
          Length = 1243

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 99/250 (39%), Gaps = 43/250 (17%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
              E +I Y F N++ L +A TH+S  + +  + Y+RLEFLGD IL  LI+  L+      
Sbjct: 989  NFESKINYTFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQH 1048

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-------------LRKDVCSFMTS 113
              G L+   ++LV+    + +A + D   + +  S              L K+    M S
Sbjct: 1049 SPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDS 1108

Query: 114  -------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK---SG 151
                                  D+ ESL  A+Y+D G+ +   +   Y   R L    S 
Sbjct: 1109 ELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSA 1168

Query: 152  KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
               R    EL E        +P  +        +D +  V VE+ G    +G+  S R A
Sbjct: 1169 NVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYRIA 1221

Query: 212  EQVAAAEVLK 221
            +  AA   L+
Sbjct: 1222 KSAAARRALR 1231



 Score = 40.8 bits (94), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 18  ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   + 
Sbjct: 652 PNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 709

Query: 78  LVSAETCSQVARELDLASFIRVS 100
            VS     ++ ++  L S + VS
Sbjct: 710 KVSNCNLYRLGKKKGLPSRMVVS 732


>gi|72059370|ref|XP_790894.1| PREDICTED: similar to Dicer protein [Strongylocentrotus purpuratus]
 gi|115954873|ref|XP_001197815.1| PREDICTED: similar to Dicer protein [Strongylocentrotus purpuratus]
          Length = 1850

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 79/168 (47%), Gaps = 35/168 (20%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y   EK I Y F +R+ L +A THSS   +S  + Y+RLEFLGD +L  LI+  L++H  
Sbjct: 1596 YDGFEKTINYRFRDRAYLLQAFTHSSYHRNSITDCYQRLEFLGDALLDYLITRHLYDHHT 1655

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFMTSIQA------- 116
            +   G L+   ++LV+    + +A + +   + +  ++++ + + +F+T + A       
Sbjct: 1656 NLSPGALTDLRSALVNNTIFASLAVKFNFHKYFKAYTANMFQVIDNFVTFVDAKNEALGM 1715

Query: 117  --------------------------DVVESLIAALYLDGGIEVAGTF 138
                                      D+ ES+  A+YLD G+ +   +
Sbjct: 1716 DSQLKYSEMDGEQEESEDIEVPKALGDIFESVAGAIYLDSGMSLNAVW 1763


>gi|255521158|ref|ZP_05388395.1| ribonuclease III [Listeria monocytogenes FSL J1-175]
          Length = 147

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 3/133 (2%)

Query: 86  QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145
           + A  +  + ++R+     K       ++ ADV ES I ALYLD GI+   TF+++    
Sbjct: 6   EFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFESFIGALYLDNGIDKVVTFLERVIFP 65

Query: 146 RALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203
           + + +G + +  D KT+LQE       V  EY +   +GP H+  F   V ++G    +G
Sbjct: 66  K-IDAGAYLQTVDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKG 124

Query: 204 MDCSKRAAEQVAA 216
              +K+ AEQ AA
Sbjct: 125 SGRTKKQAEQSAA 137


>gi|156838880|ref|XP_001643138.1| hypothetical protein Kpol_455p11 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156113733|gb|EDO15280.1| hypothetical protein Kpol_455p11 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 558

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 101/217 (46%), Gaps = 38/217 (17%)

Query: 29  HSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS------VRFNSLVSAE 82
           H + +   Q S ERLEFLGD  LG L+S +++  F SA EG LS      V  N+L    
Sbjct: 132 HLNDAQKTQLSNERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKESIVNNNNLFDWS 191

Query: 83  TCSQVAREL--DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG-GIEVAGTFV 139
           T     + L  ++A+  RV  D        M+   AD VE+ I AL +D  G E    F+
Sbjct: 192 TKLNFTKRLQGNIATPTRVVKDK-------MSKRYADCVEAYIGALVIDRFGTE----FL 240

Query: 140 D-KYW-----KQRALKSGK------FRRDAKTELQEWAH-AKFGVTPEYKVTFRSGPDHD 186
           D K W     +++  KS +        ++AK EL E     K G    +K+ +R   +  
Sbjct: 241 DIKEWLEELSEKKLAKSSQMVIKEPLNKNAKNELAELLQINKLG----HKLHYRKLTEM- 295

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           P F V V+I  +   +    S R AE  AA +VL+ +
Sbjct: 296 PPFRVEVKIGDILLDEAEGNSIREAEHRAAMKVLEND 332


>gi|168177328|pdb|3C4B|A Chain A, Structure Of Rnaseiiib And Dsrna Binding Domains Of Mouse
           Dicer
          Length = 265

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 101/252 (40%), Gaps = 43/252 (17%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
           + T EK+I Y F N++ L +A TH+S  + +  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 15  FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDXYQRLEFLGDAILDYLITKHLYEDPR 74

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSF------------- 110
               G L+   ++LV+    + +A + D   + + VS +L   +  F             
Sbjct: 75  QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEXQGX 134

Query: 111 ------------------MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149
                             +     D+ ESL  A+Y D G  +   +   Y   + L    
Sbjct: 135 DSELRRSEEDEEKEEDIEVPKAXGDIFESLAGAIYXDSGXSLEVVWQVYYPXXQPLIEKF 194

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 195 SANVPRSPVRELLEXEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 247

Query: 210 AAEQVAAAEVLK 221
            A+  AA   L+
Sbjct: 248 IAKSAAARRALR 259


>gi|238814324|ref|NP_001154925.1| endoribonuclease Dicer [Danio rerio]
 gi|229485378|sp|Q6TV19|DICER_DANRE RecName: Full=Endoribonuclease Dicer
          Length = 1865

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 99/250 (39%), Gaps = 43/250 (17%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
              E +I Y F N++ L +A TH+S  + +  + Y+RLEFLGD IL  LI+  L+      
Sbjct: 1611 NFESKINYTFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQH 1670

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFMTS 113
              G L+   ++LV+    + +A + D   + +  S              L K+    M S
Sbjct: 1671 SPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDS 1730

Query: 114  -------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK---SG 151
                                  D+ ESL  A+Y+D G+ +   +   Y   R L    S 
Sbjct: 1731 ELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSA 1790

Query: 152  KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
               R    EL E        +P  +        +D +  V VE+ G    +G+  S R A
Sbjct: 1791 NVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYRIA 1843

Query: 212  EQVAAAEVLK 221
            +  AA   L+
Sbjct: 1844 KSAAARRALR 1853



 Score = 40.4 bits (93), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 18   ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
             N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   + 
Sbjct: 1274 PNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1331

Query: 78   LVSAETCSQVARELDLASFIRVS 100
             VS     ++ ++  L S + VS
Sbjct: 1332 KVSNCNLYRLGKKKGLPSRMVVS 1354


>gi|166240125|ref|XP_647462.2| hypothetical protein DDB_G0268410 [Dictyostelium discoideum AX4]
 gi|165988755|gb|EAL73658.2| hypothetical protein DDB_G0268410 [Dictyostelium discoideum AX4]
          Length = 1385

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 7/136 (5%)

Query: 13   IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            IG   ++ SLLE+AL      HS  +SY+RLE++GD +L   +S  L+  F  A+EG+L+
Sbjct: 1222 IGVHISHSSLLEEALCFPYSFHSASKSYQRLEYVGDAVLDFFVSDFLYATFPLAQEGQLT 1281

Query: 73   VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG-- 130
               + LV     S ++R+L L     VS  +R    +       D +ES I   ++D   
Sbjct: 1282 DYRSRLVRNSNLSSISRKLCLPP--TVSKGIRD---TLPIKKLGDYLESFIGCCFVDTTQ 1336

Query: 131  GIEVAGTFVDKYWKQR 146
              E   + V KY   R
Sbjct: 1337 SFEYTKSLVYKYLDLR 1352



 Score = 53.1 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 13/119 (10%)

Query: 18   ANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
            + +++ ++ LT   I   YQ      +RLEFLGD +L L+ +  LF  +    EG LS  
Sbjct: 1069 STKTIPKRTLTQLGIFGKYQPYLGDNQRLEFLGDSVLKLVSTIYLFFKYPKMSEGFLSQT 1128

Query: 75   FNSLVSAETCSQVARELDLASFIRVSS--DLRKDVCSFMTSIQADVVESLIAALYLDGG 131
             +     +    V++ L L   +R ++  + RK         QADV+E+LI A+Y+D G
Sbjct: 1129 RSDFTKNDHLLDVSKRLGLEEILRFTTEEEFRKP--------QADVIEALIGAVYIDRG 1179


>gi|156044530|ref|XP_001588821.1| hypothetical protein SS1G_10369 [Sclerotinia sclerotiorum 1980]
 gi|154694757|gb|EDN94495.1| hypothetical protein SS1G_10369 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1515

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 68/135 (50%), Gaps = 18/135 (13%)

Query: 17   FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
             ++R L++ A+TH+S  +S   +Y+RLEFLGD IL L  S  L + +    EG LS   +
Sbjct: 1013 ISDRGLVQTAITHAS--YSLTSNYQRLEFLGDSILKLCTSVQLISEYPLWPEGYLSAMKD 1070

Query: 77   SLVSAETCSQVARELDLASFI-------------RVSSDLR---KDVCSFMTSIQADVVE 120
             +VS    S+ A EL L  +I              V   L+   +      + + +DVVE
Sbjct: 1071 RIVSNSRSSRAAVELGLDEYIITKKFTGSKWRPMYVEDYLKTTEQKSRQMSSKVLSDVVE 1130

Query: 121  SLIAALYLDGGIEVA 135
            +LI A  +DGGI  A
Sbjct: 1131 ALIGACMVDGGIPKA 1145



 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 53/89 (59%), Gaps = 1/89 (1%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            +E+ + Y F  +SLL +A+TH S  +  Q S ERLEFLGD IL  +I T ++++      
Sbjct: 1185 IEQILAYTFTKKSLLVEAMTHPSYINGTQ-SLERLEFLGDAILDNIIVTAMWSYETELSH 1243

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFI 97
             ++ +  ++LV+A+  + +  E+ +  ++
Sbjct: 1244 FQMHLLRSALVNADFLAFLCMEMSIEQYV 1272


>gi|242215871|ref|XP_002473747.1| predicted protein [Postia placenta Mad-698-R]
 gi|220727142|gb|EED81071.1| predicted protein [Postia placenta Mad-698-R]
          Length = 1725

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 93/189 (49%), Gaps = 26/189 (13%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            +SAL ++ L++ +GY F +  LL +A+TH S +     SY+RLEFLGD ++ L +   L+
Sbjct: 1112 VSAL-FTLLQESLGYRFRSGRLLLEAMTHPSFNSFETSSYQRLEFLGDAVVDLAVMRYLY 1170

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVA-RELDLASFIRVSS-DLRKDVCSFMTSIQ--- 115
            N F  A  G+LS   +  V A + + VA + L L   + V++ +L   + +++  ++   
Sbjct: 1171 NKFPQATSGQLSWARSRAVCAPSLASVAVKRLGLHKLLLVNNVELSIAINNYVPILEELS 1230

Query: 116  -----------------ADVVESLIAALYLDG--GIEVAGTFVDKYWKQ-RALKSGKFRR 155
                             +DV+ES++ A+ +D     E+A +  +        + S    R
Sbjct: 1231 NEELIHNAWKQDPPKAISDVMESVLGAVLVDSDYNWEIACSVSEMVMGDLLVVLSPNLPR 1290

Query: 156  DAKTELQEW 164
            D  +EL  W
Sbjct: 1291 DPISELMIW 1299



 Score = 39.3 bits (90), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 2/80 (2%)

Query: 22   LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
            LL +ALT  S +  +    +RLE LGD +L L     LFN F    EG+L     + VS 
Sbjct: 950  LLIQALTIPSANAGFNN--QRLETLGDSVLKLTTVVHLFNRFPFRHEGQLDTLRRNSVSN 1007

Query: 82   ETCSQVARELDLASFIRVSS 101
             T    A+E+ L  ++   S
Sbjct: 1008 RTLLARAKEVGLEEYLSCES 1027


>gi|215694849|dbj|BAG90040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 1058

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 19/145 (13%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE+ IGY F ++ LL +A  H S S      Y+RLEFLGD +L  +I++ L++ +   K 
Sbjct: 618 LEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLYSTYPDIKP 677

Query: 69  GELSVRFNSLVSAETCSQVARELDL-ASFIRVSSDLRKDVCSFMTSIQ------------ 115
           G+++   +  V  ++ +  A E  +    I+ S+ L   +  F   ++            
Sbjct: 678 GQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNSEKDLLEEP 737

Query: 116 ------ADVVESLIAALYLDGGIEV 134
                  D+VES I A+ LD G  +
Sbjct: 738 ACPKALGDIVESCIGAVLLDSGFNL 762



 Score = 35.4 bits (80), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 9/75 (12%)

Query: 154  RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VVVEISGLAPAQGMDC----- 206
             + A++ L E   A +   PE+K+    GP H  +FT  VVVEI G A A  ++C     
Sbjct: 968  HKTARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKG-ASATLLECHSDGK 1026

Query: 207  -SKRAAEQVAAAEVL 220
              K+AA++ AA   L
Sbjct: 1027 LQKKAAQEHAAQGAL 1041


>gi|219558950|ref|ZP_03538026.1| ribonuclease III [Mycobacterium tuberculosis T17]
 gi|289571114|ref|ZP_06451341.1| ribonuclease III rnc [Mycobacterium tuberculosis T17]
 gi|289544868|gb|EFD48516.1| ribonuclease III rnc [Mycobacterium tuberculosis T17]
          Length = 139

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 63/117 (53%), Gaps = 5/117 (4%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LL  ALTH S ++      + ERLEFLGD +LGL I+  LF+      EG+L+    S+V
Sbjct: 20  LLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVV 79

Query: 80  SAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           + +  + VAR L    L   + +         +  +SI AD +ESL+ A+YL  G+E
Sbjct: 80  NTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADGMESLLGAIYLQHGME 136


>gi|115459356|ref|NP_001053278.1| Os04g0509300 [Oryza sativa Japonica Group]
 gi|113564849|dbj|BAF15192.1| Os04g0509300 [Oryza sativa Japonica Group]
          Length = 1090

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 102/245 (41%), Gaps = 44/245 (17%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE+ IGY F ++ LL +A  H S S      Y+RLEFLGD +L  +I++ L++ +   K 
Sbjct: 650 LEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLYSTYPDIKP 709

Query: 69  GELSVRFNSLVSAETCSQVARELDL-ASFIRVSSDLRKDVCSFMTSIQ------------ 115
           G+++   +  V  ++ +  A E  +    I+ S+ L   +  F   ++            
Sbjct: 710 GQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNSEKDLLEEP 769

Query: 116 ------ADVVESLIAALYLDGGIEVAGTFVDKYWK------QRALKSGKFRRDAKTELQE 163
                  D+VES I A+ LD G       ++  WK      +  L       +   EL+E
Sbjct: 770 ACPKALGDIVESCIGAVLLDSGFN-----LNYVWKVMLMLLKPVLTFANMHTNPMRELRE 824

Query: 164 WAHA---KFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVAAA 217
                  + G+    K         D  + V VE+   S +      + + +AA + AA 
Sbjct: 825 LCQCHGFELGLPKPMKA--------DGEYHVKVEVNIKSKIIICTAANRNSKAARKFAAQ 876

Query: 218 EVLKR 222
           E L +
Sbjct: 877 ETLSK 881



 Score = 35.4 bits (80), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 9/75 (12%)

Query: 154  RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VVVEISGLAPAQGMDC----- 206
             + A++ L E   A +   PE+K+    GP H  +FT  VVVEI G A A  ++C     
Sbjct: 1000 HKTARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKG-ASATLLECHSDGK 1058

Query: 207  -SKRAAEQVAAAEVL 220
              K+AA++ AA   L
Sbjct: 1059 LQKKAAQEHAAQGAL 1073


>gi|218195189|gb|EEC77616.1| hypothetical protein OsI_16596 [Oryza sativa Indica Group]
          Length = 1576

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 102/245 (41%), Gaps = 44/245 (17%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            LE+ IGY F ++ LL +A  H S S      Y+RLEFLGD +L  +I++ L++ +   K 
Sbjct: 1136 LEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLYSTYPDIKP 1195

Query: 69   GELSVRFNSLVSAETCSQVARELDL-ASFIRVSSDLRKDVCSFMTSIQ------------ 115
            G+++   +  V  ++ +  A E  +    I+ S+ L   +  F   ++            
Sbjct: 1196 GQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNSEKDLLEEP 1255

Query: 116  ------ADVVESLIAALYLDGGIEVAGTFVDKYWK------QRALKSGKFRRDAKTELQE 163
                   D+VES I A+ LD G       ++  WK      +  L       +   EL+E
Sbjct: 1256 ACPKALGDIVESCIGAVLLDSGFN-----LNYVWKVMLMLLKPVLTFANMHTNPMRELRE 1310

Query: 164  WAHA---KFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVAAA 217
                   + G+    K         D  + V VE+   S +      + + +AA + AA 
Sbjct: 1311 LCQCHGFELGLPKPMKA--------DGEYHVKVEVNIKSKIIICTAANRNSKAARKFAAQ 1362

Query: 218  EVLKR 222
            E L +
Sbjct: 1363 ETLSK 1367



 Score = 35.8 bits (81), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 9/75 (12%)

Query: 154  RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VVVEISGLAPAQGMDC----- 206
             + A++ L E   A +   PE+K+    GP H  +FT  VVVEI G A A  ++C     
Sbjct: 1486 HKTARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKG-ASATLLECHSDGK 1544

Query: 207  -SKRAAEQVAAAEVL 220
              K+AA++ AA   L
Sbjct: 1545 LQKKAAQEHAAQGAL 1559


>gi|157279689|dbj|BAF80150.1| SHOOT ORGANIZATION1 [Oryza sativa Japonica Group]
          Length = 1631

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 102/245 (41%), Gaps = 44/245 (17%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            LE+ IGY F ++ LL +A  H S S      Y+RLEFLGD +L  +I++ L++ +   K 
Sbjct: 1191 LEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLYSTYPDIKP 1250

Query: 69   GELSVRFNSLVSAETCSQVARELDL-ASFIRVSSDLRKDVCSFMTSIQ------------ 115
            G+++   +  V  ++ +  A E  +    I+ S+ L   +  F   ++            
Sbjct: 1251 GQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNSEKDLLEEP 1310

Query: 116  ------ADVVESLIAALYLDGGIEVAGTFVDKYWK------QRALKSGKFRRDAKTELQE 163
                   D+VES I A+ LD G       ++  WK      +  L       +   EL+E
Sbjct: 1311 ACPKALGDIVESCIGAVLLDSGFN-----LNYVWKVMLMLLKPVLTFANMHTNPMRELRE 1365

Query: 164  WAHA---KFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVAAA 217
                   + G+    K         D  + V VE+   S +      + + +AA + AA 
Sbjct: 1366 LCQCHGFELGLPKPMKA--------DGEYHVKVEVNIKSKIIICTAANRNSKAARKFAAQ 1417

Query: 218  EVLKR 222
            E L +
Sbjct: 1418 ETLSK 1422



 Score = 35.8 bits (81), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 9/75 (12%)

Query: 154  RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VVVEISGLAPAQGMDC----- 206
             + A++ L E   A +   PE+K+    GP H  +FT  VVVEI G A A  ++C     
Sbjct: 1541 HKTARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKG-ASATLLECHSDGK 1599

Query: 207  -SKRAAEQVAAAEVL 220
              K+AA++ AA   L
Sbjct: 1600 LQKKAAQEHAAQGAL 1614


>gi|251764670|sp|A7LFZ6|DCL4_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 4; AltName:
            Full=Dicer-like protein 4; Short=OsDCL4; AltName:
            Full=Protein SHOOT ORGANIZATION 1
 gi|152926631|gb|ABS32306.1| dicer-like protein [Oryza sativa Japonica Group]
          Length = 1657

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 102/245 (41%), Gaps = 44/245 (17%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            LE+ IGY F ++ LL +A  H S S      Y+RLEFLGD +L  +I++ L++ +   K 
Sbjct: 1217 LEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLYSTYPDIKP 1276

Query: 69   GELSVRFNSLVSAETCSQVARELDL-ASFIRVSSDLRKDVCSFMTSIQ------------ 115
            G+++   +  V  ++ +  A E  +    I+ S+ L   +  F   ++            
Sbjct: 1277 GQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNSEKDLLEEP 1336

Query: 116  ------ADVVESLIAALYLDGGIEVAGTFVDKYWK------QRALKSGKFRRDAKTELQE 163
                   D+VES I A+ LD G       ++  WK      +  L       +   EL+E
Sbjct: 1337 ACPKALGDIVESCIGAVLLDSGFN-----LNYVWKVMLMLLKPVLTFANMHTNPMRELRE 1391

Query: 164  WAHA---KFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVAAA 217
                   + G+    K         D  + V VE+   S +      + + +AA + AA 
Sbjct: 1392 LCQCHGFELGLPKPMKA--------DGEYHVKVEVNIKSKIIICTAANRNSKAARKFAAQ 1443

Query: 218  EVLKR 222
            E L +
Sbjct: 1444 ETLSK 1448



 Score = 35.8 bits (81), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 9/75 (12%)

Query: 154  RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VVVEISGLAPAQGMDC----- 206
             + A++ L E   A +   PE+K+    GP H  +FT  VVVEI G A A  ++C     
Sbjct: 1567 HKTARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKG-ASATLLECHSDGK 1625

Query: 207  -SKRAAEQVAAAEVL 220
              K+AA++ AA   L
Sbjct: 1626 LQKKAAQEHAAQGAL 1640


>gi|32488296|emb|CAE03362.1| OSJNBb0065L13.5 [Oryza sativa Japonica Group]
 gi|116311061|emb|CAH67991.1| OSIGBa0157K09-H0214G12.2 [Oryza sativa Indica Group]
          Length = 1604

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 102/245 (41%), Gaps = 44/245 (17%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            LE+ IGY F ++ LL +A  H S S      Y+RLEFLGD +L  +I++ L++ +   K 
Sbjct: 1164 LEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLYSTYPDIKP 1223

Query: 69   GELSVRFNSLVSAETCSQVARELDL-ASFIRVSSDLRKDVCSFMTSIQ------------ 115
            G+++   +  V  ++ +  A E  +    I+ S+ L   +  F   ++            
Sbjct: 1224 GQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNSEKDLLEEP 1283

Query: 116  ------ADVVESLIAALYLDGGIEVAGTFVDKYWK------QRALKSGKFRRDAKTELQE 163
                   D+VES I A+ LD G       ++  WK      +  L       +   EL+E
Sbjct: 1284 ACPKALGDIVESCIGAVLLDSGFN-----LNYVWKVMLMLLKPVLTFANMHTNPMRELRE 1338

Query: 164  WAHA---KFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVAAA 217
                   + G+    K         D  + V VE+   S +      + + +AA + AA 
Sbjct: 1339 LCQCHGFELGLPKPMKA--------DGEYHVKVEVNIKSKIIICTAANRNSKAARKFAAQ 1390

Query: 218  EVLKR 222
            E L +
Sbjct: 1391 ETLSK 1395



 Score = 35.8 bits (81), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 9/75 (12%)

Query: 154  RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VVVEISGLAPAQGMDC----- 206
             + A++ L E   A +   PE+K+    GP H  +FT  VVVEI G A A  ++C     
Sbjct: 1514 HKTARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKG-ASATLLECHSDGK 1572

Query: 207  -SKRAAEQVAAAEVL 220
              K+AA++ AA   L
Sbjct: 1573 LQKKAAQEHAAQGAL 1587


>gi|198457361|ref|XP_001360634.2| GA19635 [Drosophila pseudoobscura pseudoobscura]
 gi|198135949|gb|EAL25209.2| GA19635 [Drosophila pseudoobscura pseudoobscura]
          Length = 1720

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 1/113 (0%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +S LE+ +GY F +R  L +ALTH S  ++     Y+ LEF+GD IL  LIS  +F +
Sbjct: 1438 INHSYLEQNLGYKFRDRGYLLQALTHPSFPTNRLTGCYQELEFIGDAILDFLISAYIFEN 1497

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
             +  + GEL+   ++LV+  T   +     L  FI   + L  +  S     Q
Sbjct: 1498 NNKLRPGELTDLRSALVNNTTLGCICVRHKLHLFILAENALLSETISKFVKFQ 1550


>gi|71893762|ref|YP_279208.1| ribonuclease III [Mycoplasma hyopneumoniae J]
 gi|72080732|ref|YP_287790.1| ribonuclease III [Mycoplasma hyopneumoniae 7448]
 gi|71851889|gb|AAZ44497.1| ribonuclease III [Mycoplasma hyopneumoniae J]
 gi|71913856|gb|AAZ53767.1| ribonuclease III [Mycoplasma hyopneumoniae 7448]
          Length = 227

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 78/145 (53%), Gaps = 12/145 (8%)

Query: 25  KALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           +ALTH S +  +  +  YE LEFLGD ++   +S +++++F   +     +R + L S  
Sbjct: 26  QALTHKSYNFINPDKPHYEMLEFLGDSVINYAVSKVIYDNFYKNEGNSTQIR-SLLTSTS 84

Query: 83  TCSQVARELDLASFI---RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
           + +   +++ L +++   R +S++R++       ++AD+ ES  AA+ LD G E    F+
Sbjct: 85  SLANATKKVGLMNYVLLGRGASEIREN-----NKLKADIFESFCAAILLDQGFEKLNEFL 139

Query: 140 DKY-WKQRALKSGKFRRDAKTELQE 163
            +Y +K     + K  +D K+  QE
Sbjct: 140 SEYLYKDVNFDTEKQYKDPKSIFQE 164


>gi|331236934|ref|XP_003331125.1| hypothetical protein PGTG_13088 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|309310115|gb|EFP86706.1| hypothetical protein PGTG_13088 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1465

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 27/162 (16%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
            L+   LEK+IGY F  + LL +ALTH S +      YER E+LGD ++ + I    +  F
Sbjct: 1099 LKCQALEKKIGYVFKEKLLLVQALTHRSANSFMTNCYEREEWLGDAVIDMWIVEHAYKRF 1158

Query: 64   DSAKEGELSVRFNSLVSAETCSQVA-RELDLASFIRVSSDLRKDVCS------------- 109
            D A   EL++    +VS  +   +A ++L L   I  +S+  +  C+             
Sbjct: 1159 DHATAEELTLARAKVVSNGSLGFLALKKLGLQEIIMHASENFEQACTEAIEAIKPFAKIE 1218

Query: 110  --FMT-----------SIQADVVESLIAALYLDGGIEVAGTF 138
              F T            I  DV+E+++ A+++D G  +   +
Sbjct: 1219 EYFSTIDNLFVVFDPPKILNDVLEAIVGAVFIDSGFNLHTAY 1260


>gi|294611997|gb|ADF27743.1| ribonuclease III [Ehrlichia ruminantium]
          Length = 92

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 50/90 (55%)

Query: 87  VARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQR 146
           +A+ ++L  FI +S   R    +   +   + +E+LI A+YLDGG++ A  F+  +WK  
Sbjct: 3   IAQSINLGIFIIMSDGERSCGGANNCNNLENALEALIGAIYLDGGLKAAKDFIFLFWKNS 62

Query: 147 ALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           A       +DAKT LQEWA +K    P Y+
Sbjct: 63  ATHMKVPPQDAKTILQEWAQSKGFPAPSYQ 92


>gi|312601347|gb|ADQ90602.1| Ribonuclease III [Mycoplasma hyopneumoniae 168]
          Length = 227

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 78/145 (53%), Gaps = 12/145 (8%)

Query: 25  KALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           +ALTH S +  +  +  YE LEFLGD ++   +S +++++F   +     +R + L S  
Sbjct: 26  QALTHKSYNFINPDKPHYEMLEFLGDSVINYAVSKVIYDNFYKNEGNSTQIR-SLLTSTS 84

Query: 83  TCSQVARELDLASFI---RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
           + +   +++ L +++   R +S++R++       ++AD+ ES  AA+ LD G E    F+
Sbjct: 85  SLANATKKVGLMNYVLLGRGASEIREN-----NKLKADIFESFCAAILLDQGFEKLNEFL 139

Query: 140 DKY-WKQRALKSGKFRRDAKTELQE 163
            +Y +K     + K  +D K+  QE
Sbjct: 140 SEYLYKDVNFDTEKQYKDPKSIFQE 164


>gi|229495315|ref|ZP_04389050.1| ribonuclease III [Porphyromonas endodontalis ATCC 35406]
 gi|229317758|gb|EEN83656.1| ribonuclease III [Porphyromonas endodontalis ATCC 35406]
          Length = 298

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 104/236 (44%), Gaps = 29/236 (12%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHS--------------YQESYERLEFLGDRIL 51
           + TLE+ +G+A  ++     AL   S + S                ++ +RLEFLGD I+
Sbjct: 25  WKTLEQILGFAIRDKEYYRLALIDPSTTASGNGGKRAAGRSKMTSNDNNDRLEFLGDSII 84

Query: 52  GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD--LRKDVCS 109
           G ++S  L+  + ++  G LS +   +VS +    +A+ + +   I+ SS+  L KD   
Sbjct: 85  GAVVSETLYRTYPNSPVGALSEQKAKIVSRKIGDTIAKRMGIDGLIQHSSENFLAKDA-- 142

Query: 110 FMTSIQADVVESLIAALYLDGGIEVAGTFVDK----YWKQRALKSGKFRRDAKTELQEWA 165
                  + +E+++ A+YLD G + A  FV+      +++          + K +L EW 
Sbjct: 143 -----PGNALEAIVGAIYLDRGFDFAHQFVNHKMLGIYREIRETQPDLGTNFKNKLIEWG 197

Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             K   T E+ +   + P     F   V I           +K+ +EQ AA   L+
Sbjct: 198 -LKHKCTVEFCLIAHA-PGPRGYFVSQVFIDNQPMGHSKGSTKKGSEQGAAKLALE 251


>gi|148985143|ref|ZP_01818382.1| ribonuclease III [Streptococcus pneumoniae SP3-BS71]
 gi|147922588|gb|EDK73706.1| ribonuclease III [Streptococcus pneumoniae SP3-BS71]
          Length = 153

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 68/147 (46%), Gaps = 3/147 (2%)

Query: 78  LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137
           +V  E+ +  AR+     FI++     K       +I  D  E+ + AL LD  +     
Sbjct: 2   IVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILGDAFEAFLGALLLDKDVAKVKE 61

Query: 138 FVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
           F+ +    + +++G+F    D KT LQE       V   Y+V   +GP HD  F V V +
Sbjct: 62  FIYQVMIPK-VEAGEFEMITDYKTHLQELLQVNGDVAIRYQVISETGPAHDKVFDVEVLV 120

Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            G +  QG   SK+ AEQ AA   +++
Sbjct: 121 EGKSIGQGQGRSKKLAEQEAAKNAVEK 147


>gi|302901921|ref|XP_003048541.1| hypothetical protein NECHADRAFT_95770 [Nectria haematococca mpVI
            77-13-4]
 gi|256729474|gb|EEU42828.1| hypothetical protein NECHADRAFT_95770 [Nectria haematococca mpVI
            77-13-4]
          Length = 1381

 Score = 58.9 bits (141), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 58/99 (58%), Gaps = 4/99 (4%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            LE+ IGY+F  +SLL +A+TH S +  ++Q SYE+LEFLGD +L  +I T +FN      
Sbjct: 1095 LEELIGYSFRKKSLLIEAVTHGSYAGDTHQRSYEQLEFLGDAVLDYIIVTKVFNVKPPLP 1154

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD 106
              +L +   ++V+ E  + V  E  L    RV +D+  D
Sbjct: 1155 HSDLHLIKTAMVNGEFLAFVNLEHRLR---RVETDVNAD 1190


>gi|332020119|gb|EGI60563.1| Endoribonuclease Dcr-1 [Acromyrmex echinatior]
          Length = 1979

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 67/254 (26%), Positives = 100/254 (39%), Gaps = 45/254 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y  LEK IGY F + S L +A TH+S   +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1721 YEELEKSIGYKFRDSSYLLQAFTHASYQPNRLTDCYQRLEFLGDAVLDYLITRHLYEDSR 1780

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ--------- 115
                G L+   ++LV+    + +A       + R  S     V +    IQ         
Sbjct: 1781 QHSPGALTDLRSALVNNTIFASLAVRCGFHKYFRHLSPGLSVVINRFVRIQEENGHSISE 1840

Query: 116  ----------------------ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153
                                   DV ESL  A+YLD G+ +   +   Y   ++      
Sbjct: 1841 EYYLIGEEECEEAEDVEVPKALGDVFESLAGAIYLDSGMSLDAVWSVYYTIMKSEIEQFS 1900

Query: 154  RRDAKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
                K+ ++E        AKFG  PE     R       R  V V++ G    +G+  + 
Sbjct: 1901 TNVPKSPIRELLELEPETAKFG-RPEKLADGR-------RVRVTVDVFGKGSFKGIGRNY 1952

Query: 209  RAAEQVAAAEVLKR 222
            R A+  AA   LK+
Sbjct: 1953 RIAKCTAAKCALKK 1966



 Score = 36.6 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 14   GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            G++  + SL+ +ALT S+ +     + ERLE +GD  L   I+T L+  +D+  EG+LS
Sbjct: 1437 GHSGPSPSLILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYCTYDNIHEGKLS 1493


>gi|307190121|gb|EFN74275.1| Endoribonuclease Dcr-1 [Camponotus floridanus]
          Length = 1976

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 67/254 (26%), Positives = 100/254 (39%), Gaps = 45/254 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y  LEK IGY F + S L +A TH+S   +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1717 YDELEKSIGYKFRDSSYLLQAFTHASYQPNRLTDCYQRLEFLGDAVLDYLITRHLYEDSR 1776

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ--------- 115
                G L+   ++LV+    + +A       + R  S     V +    IQ         
Sbjct: 1777 QHSPGALTDLRSALVNNTIFASLAVRCGFHKYFRHLSPGLSVVINRFVRIQEENGHSISE 1836

Query: 116  ----------------------ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153
                                   DV ESL  A+YLD G+ +   +   Y   ++      
Sbjct: 1837 EYYLIGEEECEEAEDVEVPKALGDVFESLAGAIYLDSGMSLDAVWSVYYTIMKSEIEQFS 1896

Query: 154  RRDAKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
                K+ ++E        AKFG  PE     R       R  V V++ G    +G+  + 
Sbjct: 1897 TNVPKSPIRELLELEPETAKFG-RPEKLADGR-------RVRVTVDVFGKGSFKGIGRNY 1948

Query: 209  RAAEQVAAAEVLKR 222
            R A+  AA   LK+
Sbjct: 1949 RIAKCTAAKCALKK 1962


>gi|148907962|gb|ABR17101.1| unknown [Picea sitchensis]
          Length = 685

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 27/158 (17%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE+ +GY F+ + LL +A  H S +      Y+RLEFLGD +L  +I++ L++ +   K 
Sbjct: 225 LERLLGYNFSYKGLLLEAFAHPSFNEHNGGCYQRLEFLGDAVLDYIITSYLYSVYPDMKP 284

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSD-LRKDVCSFMTSIQA----------- 116
           G L+   +  V+ E+ + VA    L  ++   SD L   V  ++  ++A           
Sbjct: 285 GYLTDMRSMTVNNESFACVAVRHGLYMYLIQKSDSLSSAVTKYVDFMKALFTADRDSCDE 344

Query: 117 ----------DVVESLIAALYLDGGIEVAGTFVDKYWK 144
                     D+VES   AL +D G +     +D  WK
Sbjct: 345 PEPKCPKVLGDIVESFAGALVIDTGFD-----LDCVWK 377


>gi|113474882|ref|YP_720943.1| RNAse III [Trichodesmium erythraeum IMS101]
 gi|110165930|gb|ABG50470.1| RNAse III [Trichodesmium erythraeum IMS101]
          Length = 250

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 84/167 (50%), Gaps = 12/167 (7%)

Query: 16  AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
           A    +LL+ ALTHS++S ++    E+LEF GD ++ L+ + LL  ++ +   GE +   
Sbjct: 25  ALIKWNLLDLALTHSTVSSTHNN--EKLEFFGDAVVRLVAAQLLLENYPNCSVGEFTAIR 82

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIEV 134
           + LVS  + +Q+A +   + ++ VS     D       + AD  E+++ ALYL    +E+
Sbjct: 83  SILVSDRSLAQIADKYGWSRYLLVSKSAAGDKVGRERRL-ADSFEAVLGALYLSTNNLEL 141

Query: 135 AGTFVDKYWKQRALKSGKFRRDA-----KTELQEWAHAKFGVTPEYK 176
              ++D ++++      + R+D      K  LQE     +   P Y+
Sbjct: 142 IRPWLDSHFERLI---AEIRKDPACHSYKAALQELTQGYYKTLPNYQ 185


>gi|156554976|ref|XP_001602524.1| PREDICTED: similar to dicer-1 [Nasonia vitripennis]
          Length = 1563

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 87/204 (42%), Gaps = 39/204 (19%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHFDSA 66
            T+E+R+GY F NR+ L +A TH S   + Q  SY+RLEFLGD +L  L++  ++    + 
Sbjct: 1362 TMEERLGYKFRNRAFLLQAFTHPSYMPNRQTASYQRLEFLGDAVLDFLLTIHIYETCGNL 1421

Query: 67   KEGELSVRFNSLVSAET--CSQVARELDLA-------------SFIRVSSDLRKDV---- 107
              GEL+   ++LV+  T  C  V   L  A              F++   +    +    
Sbjct: 1422 SPGELTDLRSALVNNITFACLAVRYGLHTALLALAPKLFDLIDKFVKFQENRNYKIDDEL 1481

Query: 108  ---------CSF-----MTSIQADVVESLIAALYLDGG--IEVAGTFVDKYWKQRALKSG 151
                     C+      +  +  D+ ES+I A++LD G  +EV    +    K       
Sbjct: 1482 LWVLLEEEECNMAEHVDVPKVLGDIYESVIGAIFLDSGKNLEVVWQVIYNLMKNEI---D 1538

Query: 152  KFRRDAKTELQEWAHAKFGVTPEY 175
             F ++   +     H   G  P++
Sbjct: 1539 LFSKNVPKQPIRVIHETQGANPKF 1562


>gi|158706443|sp|Q0CEI2|DCL2_ASPTN RecName: Full=Dicer-like protein 2; Includes: RecName:
            Full=Endoribonuclease dcl2; Includes: RecName:
            Full=ATP-dependent helicase dcl2
          Length = 1377

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 50/76 (65%), Gaps = 1/76 (1%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
            +L++ +GY F N +LL +ALTH S  S +  +SY+RLEFLGD +L +++   + +H    
Sbjct: 1092 SLKQHLGYTFVNEALLVEALTHPSCRSDASTQSYQRLEFLGDAVLDMVVVHAMAHHAVEC 1151

Query: 67   KEGELSVRFNSLVSAE 82
             +GE+++  ++L +A 
Sbjct: 1152 PQGEMTMIKHALTNAN 1167



 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 15/115 (13%)

Query: 40   YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99
            Y+R EF GD +L   +S  L+    +  EG LS   + +V     ++ A ++ L +FI  
Sbjct: 950  YQRYEFFGDSVLKFTVSCQLYMQHPNWPEGYLSEGRDEIVQNNRLARAALDVGLDAFILT 1009

Query: 100  SSDLRKDVCSFMTS---------------IQADVVESLIAALYLDGGIEVAGTFV 139
                 +   + + S               + ADVVESLI A Y+DGG   A T +
Sbjct: 1010 RRFTPRKWTAPLISEKAVEVAGKRPLSSKVLADVVESLIGAAYMDGGQAKAHTCI 1064


>gi|168027292|ref|XP_001766164.1| dsRNA-specific nuclease dicer and related ribonuclease
            [Physcomitrella patens subsp. patens]
 gi|162682596|gb|EDQ69013.1| dsRNA-specific nuclease dicer and related ribonuclease
            [Physcomitrella patens subsp. patens]
          Length = 1460

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 29/159 (18%)

Query: 9    LEKRIGYAFANRSLLEKALTH-SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             EKRIGY F N+ L  +ALTH S++       Y+RLEFLGD +L  L++  LF    ++ 
Sbjct: 1227 FEKRIGYTFKNKYLPLEALTHFSNMVGDQIRCYQRLEFLGDAVLDFLLTRHLFTSHPTST 1286

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-LRKDVCSFMTSIQA---------- 116
             G L+    + V+ E  ++VA +  L  ++R  S  L   +  F+ S +A          
Sbjct: 1287 PGLLTSLRTASVNNERFARVAVKHRLHCYLRHGSGRLLHQIEEFVKSFEAADDDQKNSSF 1346

Query: 117  ------------DVVESLIAALYLDGGIEVAGTFVDKYW 143
                        D+VES+  A+ +D   +     +DK W
Sbjct: 1347 GLNGLEAPKVLGDLVESIAGAILVDTCFD-----LDKVW 1380


>gi|328716579|ref|XP_001944314.2| PREDICTED: endoribonuclease Dcr-1-like isoform 1 [Acyrthosiphon
            pisum]
          Length = 1609

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 68/250 (27%), Positives = 107/250 (42%), Gaps = 49/250 (19%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            + + E+ +GY F +RS L +A+TH+S   +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1357 FESFEQHLGYHFQDRSYLLQAMTHASYYPNRLTDCYQRLEFLGDAVLDYLITRHLYEDKR 1416

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ-------- 115
                G L+   ++LV+    + +A       + + +S  L   VC F+T IQ        
Sbjct: 1417 QHSPGALTDLRSALVNNTIFASLAVRNGFHKYFKHLSPGLSDVVCRFVT-IQEENGHTID 1475

Query: 116  -----------------------ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
                                    DV ES+  A+YLD  + +  T    Y K    +  +
Sbjct: 1476 EEFYFLGEDDCEEAEDVEVPKALGDVFESVAGAIYLDSNMSL-DTVWKVYHKIMENEMEQ 1534

Query: 153  FRRDA-KTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206
            F ++  K+ ++E        AKF   PE     R       R  VVVEI G    +G+  
Sbjct: 1535 FSKNVPKSPIRELLELEPETAKFS-KPEKLADGR-------RVRVVVEIFGKGEFKGIGR 1586

Query: 207  SKRAAEQVAA 216
            + R A+  AA
Sbjct: 1587 NYRIAKCTAA 1596


>gi|213405195|ref|XP_002173369.1| double-strand-specific pac1 ribonuclease [Schizosaccharomyces
           japonicus yFS275]
 gi|212001416|gb|EEB07076.1| double-strand-specific pac1 ribonuclease [Schizosaccharomyces
           japonicus yFS275]
          Length = 325

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 86/193 (44%), Gaps = 19/193 (9%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY-ERLEFLGDRILGLLISTLL 59
           +  +R   LE+++   F ++S   +   H   +      + ERLEFLGD +L  +++ ++
Sbjct: 99  LPIIRQKKLEEQV---FTHKSRANELFPHCLDARKLLSKHNERLEFLGDDVLEGIVTKII 155

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  F +A EGELS    +LV  +  S+ A    L   +++     K      T + ADV 
Sbjct: 156 YERFPNANEGELSKLRATLVGNDMVSKFATLYGLHEKLQLGLCGEKSQLRKCTKVVADVF 215

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALK---SGKFRRDAKTELQ------------EW 164
           E+ + ALYLD  I+ A  +V +  +   ++        + AK ELQ              
Sbjct: 216 EAYLGALYLDNQIDAAFEWVKQLIEPELVRFKMEPPINKLAKAELQRRIGKAGGKVEYRC 275

Query: 165 AHAKFGVTPEYKV 177
              K G   EYKV
Sbjct: 276 IEKKMGQREEYKV 288


>gi|195150547|ref|XP_002016212.1| GL10619 [Drosophila persimilis]
 gi|194110059|gb|EDW32102.1| GL10619 [Drosophila persimilis]
          Length = 1720

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 1/113 (0%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +S LE+ +GY F +R  L +ALTH S  ++     Y+ LEF+GD IL  LIS  +F +
Sbjct: 1438 INHSYLEQNLGYKFRDRGYLLQALTHPSFPTNRLTGCYQELEFIGDAILDFLISAYIFEN 1497

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
                + GEL+   ++LV+  T   +     L  FI   + L  +  S     Q
Sbjct: 1498 NTKLRPGELTDLRSALVNNTTLGCICVRHKLHLFILAENALLSETISKFVKFQ 1550


>gi|159481710|ref|XP_001698921.1| dicer-like protein [Chlamydomonas reinhardtii]
 gi|158273413|gb|EDO99203.1| dicer-like protein [Chlamydomonas reinhardtii]
          Length = 5684

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 38/97 (39%), Positives = 52/97 (53%), Gaps = 8/97 (8%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFD 64
            LE  +GY F N  L  +ALTH  +SH         Y+RLEFLGD +LGL++S  +F+   
Sbjct: 3493 LEALLGYRFRNPDLCVQALTH--VSHPRAAGCGGGYQRLEFLGDAVLGLVVSFWVFSAGG 3550

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS 101
            SA+   +S R   LVS    ++ A  L L   +R  S
Sbjct: 3551 SAE--AMSTRRRDLVSNGPLAEAAARLGLQRHLRAGS 3585


>gi|298711900|emb|CBJ48587.1| dicer-like 3 [Ectocarpus siliculosus]
          Length = 1557

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 86/185 (46%), Gaps = 32/185 (17%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHS-------YQESYERLEFLGDRILGLLISTLLF- 60
            LEKR+GY F    L  +A+TH S + +         + Y+RLEFLGD +LG +++  L+ 
Sbjct: 1324 LEKRLGYTFRYPWLCMQAITHPSWTINDIPPGTVPAQDYQRLEFLGDAVLGWMVTAHLYF 1383

Query: 61   --NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI---- 114
              + F  A+   + V  +S V   +   +A  LD+   +R S  +   + +F+ +     
Sbjct: 1384 ASSAFTPAELTRIKVT-SSCVCNASLWVIALRLDVHHVLRASPKILGHIHAFIENNGVSG 1442

Query: 115  -------QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHA 167
                    ADV+E+LI A+++D    +  + +        L+    R   +T  + WA  
Sbjct: 1443 TGTAPKHPADVLEALIGAVFIDSSCCMNASLL--------LEGAPPRMSMRT--KAWADM 1492

Query: 168  KFGVT 172
             F VT
Sbjct: 1493 AFAVT 1497


>gi|296424770|ref|XP_002841919.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295638171|emb|CAZ86110.1| unnamed protein product [Tuber melanosporum]
          Length = 1402

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 32/167 (19%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
            +E+ +GY F +  LL  ALTH S+  ++    SY+RLEFLGD +L L+    +F  +  A
Sbjct: 1124 IEELVGYKFKHPRLLISALTHPSLPFTWDRVPSYQRLEFLGDAVLDLVCVRYMFQKYPHA 1183

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFIR-----VSSDLRK---DV----------C 108
                L+    ++VS +    VA E+     +R     +   +R+   D+           
Sbjct: 1184 DPQWLTEHKMAMVSNKFLGMVAVEMGFHRKLRRMGSVLDHAIREYEVDIQDAKANSNGAV 1243

Query: 109  SFMTSIQA------DVVESLIAALYLDGGIE------VAGTFVDKYW 143
             F TS++A      DV+E+ I A+++D G +      +  TF+  Y+
Sbjct: 1244 DFWTSLKAPPKALPDVLEAFIGAVFVDSGFQYNIVERLVNTFILPYF 1290



 Score = 40.8 bits (94), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 23/132 (17%)

Query: 31   SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90
            S+      +YERLEFLGD  L L  S  L+  + +  E EL V+   L+        A+E
Sbjct: 951  SLQRGMGSNYERLEFLGDCFLKLATSLSLYTAYHADDECELHVKRMVLICNRYLFTKAKE 1010

Query: 91   LDLASFIRVSSDLRKDVCSFMTSIQ-----------------------ADVVESLIAALY 127
            + +  +I+ +   R+     M  +                        +DV E+LI A  
Sbjct: 1011 MKIPEYIQTAGFSRRTWYPKMKLLMGKGTTQHNSSKEEISHRLADKSISDVCEALIGAAL 1070

Query: 128  LDGGIEVAGTFV 139
            +D G++ A   V
Sbjct: 1071 IDKGLDGATQIV 1082


>gi|115401870|ref|XP_001216523.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114190464|gb|EAU32164.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 1635

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 50/76 (65%), Gaps = 1/76 (1%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
            +L++ +GY F N +LL +ALTH S  S +  +SY+RLEFLGD +L +++   + +H    
Sbjct: 1066 SLKQHLGYTFVNEALLVEALTHPSCRSDASTQSYQRLEFLGDAVLDMVVVHAMAHHAVEC 1125

Query: 67   KEGELSVRFNSLVSAE 82
             +GE+++  ++L +A 
Sbjct: 1126 PQGEMTMIKHALTNAN 1141



 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 15/117 (12%)

Query: 40   YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99
            Y+R EF GD +L   +S  L+    +  EG LS   + +V     ++ A ++ L +FI  
Sbjct: 924  YQRYEFFGDSVLKFTVSCQLYMQHPNWPEGYLSEGRDEIVQNNRLARAALDVGLDAFILT 983

Query: 100  SSDLRKDVCSFMTS---------------IQADVVESLIAALYLDGGIEVAGTFVDK 141
                 +   + + S               + ADVVESLI A Y+DGG   A T + +
Sbjct: 984  RRFTPRKWTAPLISEKAVEVAGKRPLSSKVLADVVESLIGAAYMDGGQAKAHTCIRR 1040


>gi|224101241|ref|XP_002312197.1| dicer-like protein [Populus trichocarpa]
 gi|222852017|gb|EEE89564.1| dicer-like protein [Populus trichocarpa]
          Length = 1468

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 104/242 (42%), Gaps = 29/242 (11%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            +RY  LE  + Y+F + SLL +ALTH S +       Y+RLEFLGD +L  LI+  ++  
Sbjct: 1216 VRY--LESLLNYSFNDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITLHMYKE 1273

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSFMTSIQ------ 115
            +     G L+   ++ V+ +  +  A ++ L   I   S DL K + + +  IQ      
Sbjct: 1274 YPGMSPGLLTDLRSASVNNDCYALSAVKVGLDRHILHASHDLHKHIVATVKKIQEFSLES 1333

Query: 116  --------------ADVVESLIAALYLDGGIEVAGTFVD-KYWKQRALKSGKFRRDAKTE 160
                           DV+ESL  A+ +D G      F   +   +  +     R     E
Sbjct: 1334 TFGWESETAFPKVLGDVIESLAGAILVDSGYNKEVVFESIRPLLEPLITPETLRLQPVRE 1393

Query: 161  LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS-KRAAEQVAAAEV 219
            L E    +     +YK    S    +   T+ VE +GL        + K  A+++A+ EV
Sbjct: 1394 LNELCQRQHF---DYKKPIVSRNGRNASVTIEVEANGLIFKHTATVADKTTAKKLASKEV 1450

Query: 220  LK 221
            LK
Sbjct: 1451 LK 1452


>gi|255030397|ref|ZP_05302348.1| ribonuclease III [Listeria monocytogenes LO28]
          Length = 102

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 56/99 (56%), Gaps = 4/99 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++  L++ +G+ F N  LL++A THSS  + ++    +  ERLEFLGD +L L +S  LF
Sbjct: 3   QWEELQESVGFDFKNVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99
           N +    EG ++    ++V   +  + A  +  + ++R+
Sbjct: 63  NKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRL 101


>gi|331250710|ref|XP_003337961.1| hypothetical protein PGTG_19538 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|309316951|gb|EFP93542.1| hypothetical protein PGTG_19538 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1489

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 27/162 (16%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
            L+   LE++IGY F  + LL +ALTH S +      YER E+LGD ++ + I    +  F
Sbjct: 1107 LKCQALEEKIGYVFKEKLLLVQALTHRSANSFMTNCYEREEWLGDAVIDMWIVEHAYKRF 1166

Query: 64   DSAKEGELSVRFNSLVSAETCSQVA-RELDLASFIRVSSDLRKDVCS------------- 109
            D A   EL++    +VS  +   +A ++L L   I  +S+  +  C+             
Sbjct: 1167 DHATAEELTLARAKVVSNGSLGFLALKKLGLQEIIMHASENFEQACTEAIEAIKPFAKIE 1226

Query: 110  --FMT-----------SIQADVVESLIAALYLDGGIEVAGTF 138
              F T            I  DV+E+++ A+++D G  +   +
Sbjct: 1227 EYFSTIDNLFVVFDPPKILNDVLEAIVGAVFVDSGFNLQSAY 1268


>gi|290983750|ref|XP_002674591.1| predicted protein [Naegleria gruberi]
 gi|284088182|gb|EFC41847.1| predicted protein [Naegleria gruberi]
          Length = 809

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/131 (32%), Positives = 67/131 (51%), Gaps = 12/131 (9%)

Query: 14  GYAFANRSLLEK-ALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHF--DSAK 67
           GY F    LL + A T  S +H     +  YERLEF+GD ++ L     L      D +K
Sbjct: 357 GYRFLKDPLLIRVAHTFPSYAHKMNFGRGHYERLEFMGDSVVNLTACVELIKSCRNDDSK 416

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           +G+ +  F  L++ ++ ++ A +L ++     SSD       F    Q++V+ES+I ALY
Sbjct: 417 KGDWNAGFTVLIANDSITREAEKLQISEHFLNSSD------KFSKKAQSNVIESIIGALY 470

Query: 128 LDGGIEVAGTF 138
           +  GI  A +F
Sbjct: 471 MAEGIRGARSF 481


>gi|281211700|gb|EFA85862.1| putative RNase III [Polysphondylium pallidum PN500]
          Length = 1126

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 50/182 (27%), Positives = 78/182 (42%), Gaps = 42/182 (23%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHS----------------YQESYERLEFLGDRILGLL 54
           KR  Y+  N  LL +  TH S   S                Y+   +R+EFLGD +L   
Sbjct: 701 KRNIYSINNERLLREVFTHPSTKRSNQTPPVNMKIYKNYKFYEGDNQRIEFLGDSVLKFC 760

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
            S  LF  F  A EG L+ + + + +     ++    ++   +R+  + + D+       
Sbjct: 761 TSIYLFYKFPEAMEGVLTTKRSEMTNNNYLIEICDMFEMDEVLRLPQN-KDDI----KKP 815

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174
           +ADVVE+L  A+YL+ G+  A  F+ K           F+ D         H+KF   PE
Sbjct: 816 KADVVEALFGAVYLERGMYEAFRFIMKMI---------FKID---------HSKF---PE 854

Query: 175 YK 176
           YK
Sbjct: 855 YK 856



 Score = 56.2 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/106 (35%), Positives = 56/106 (52%), Gaps = 9/106 (8%)

Query: 39  SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
           SY+RLEFLGD  L ++ S  LF+ F + +EG LS     LV  ++ + + ++L+L   + 
Sbjct: 899 SYQRLEFLGDAFLDVVTSDFLFHAFPNEQEGFLSQARALLVKNDSLACIFQQLNLKDCVD 958

Query: 99  VSSDLRKDVCS---FMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141
           +SS      C    F      D+ ES++  L LD GIE    FV K
Sbjct: 959 LSS------CPGIVFNQKRMGDLFESVVGCLLLDQGIEKTKDFVLK 998


>gi|114600833|ref|XP_001157148.1| PREDICTED: ribonuclease III, nuclear isoform 2 [Pan troglodytes]
          Length = 1193

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/99 (34%), Positives = 57/99 (57%), Gaps = 2/99 (2%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  ++  +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1069 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1128

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS 101
            F    EG L++  +SLV+  T ++VA EL++   ++V S
Sbjct: 1129 FPDHHEGHLTLLRSSLVNNRTQAKVAEELEIKEGMQVWS 1167



 Score = 56.6 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%)

Query: 28   THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
            T S I+H+     ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +
Sbjct: 921  TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 975

Query: 88   ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135
            A++L+L  F+  +     D+C  S +    A+  E+LI A+YL+G +E A
Sbjct: 976  AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1023


>gi|297812215|ref|XP_002873991.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297319828|gb|EFH50250.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1693

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 19/145 (13%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            LE ++ Y F ++ LL +A  H S +      Y+RLEFLGD +L  L+++  F  F   K 
Sbjct: 1287 LENQLDYNFLHKGLLVQAFIHPSYNRHGGGCYQRLEFLGDAVLDYLMTSYFFTVFPKLKP 1346

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA------------ 116
            G+L+   +  V+ +  + VA    L  F+   S    +     T+ +A            
Sbjct: 1347 GQLTDLRSLSVNNKALANVAVSFSLKRFLFCESVYLHEAIEDYTNFRAASPLASGPSEGP 1406

Query: 117  -------DVVESLIAALYLDGGIEV 134
                   D+VES + AL+LD G  +
Sbjct: 1407 RCPKVLGDLVESCLGALFLDCGFNL 1431



 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 33/60 (55%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
            S ERLE LGD  L   +S  LF H D   EGEL+ R +  V+     ++A + +L  +IR
Sbjct: 1110 SLERLEVLGDAFLKFAVSRHLFLHHDRLDEGELTRRRSKAVNNSNLCRLAIKRNLQVYIR 1169


>gi|80979085|gb|ABB54745.1| Dicer-2 [Drosophila melanogaster]
          Length = 1715

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 1/95 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +S LEK +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1424 INHSYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1483

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
                  G L+   ++LV+  T + +     L  FI
Sbjct: 1484 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFI 1518


>gi|80979089|gb|ABB54747.1| Dicer-2 [Drosophila melanogaster]
          Length = 1715

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 1/95 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +S LEK +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1424 INHSYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1483

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
                  G L+   ++LV+  T + +     L  FI
Sbjct: 1484 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFI 1518


>gi|80979093|gb|ABB54749.1| Dicer-2 [Drosophila melanogaster]
          Length = 1715

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 1/95 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +S LEK +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1424 INHSYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1483

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
                  G L+   ++LV+  T + +     L  FI
Sbjct: 1484 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFI 1518


>gi|240255863|ref|NP_680697.4| ATRTL1 (ARABIDOPSIS THALIANA RNASEIII-LIKE 1); RNA binding /
           ribonuclease III [Arabidopsis thaliana]
 gi|332658200|gb|AEE83600.1| protein RNAse II-like 1 [Arabidopsis thaliana]
          Length = 264

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 77/182 (42%), Gaps = 17/182 (9%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +   +LEK + Y F ++SLL KA T +S      ESYE LE LGD IL + I       +
Sbjct: 27  MEIESLEKILNYKFKDKSLLLKAFTDASYVDDKSESYELLELLGDSILNMGIIYDFIKLY 86

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-LRKDVCSFMTSIQ------- 115
                G L+      V  E  ++VA    L S++R     L + +  F+ +++       
Sbjct: 87  PKEAPGPLTKLRAVNVDTEKLARVAVNHQLYSYLRHKKPLLEEQILEFVEAMEKYPLHSN 146

Query: 116 ---------ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH 166
                    AD+VES I A+++D         V K   +  +   K +    TEL E   
Sbjct: 147 GLLKVPKVLADIVESTIGAIFMDCNSTETVWKVIKPLLEPIIHLDKMKSHPMTELNEMCQ 206

Query: 167 AK 168
            +
Sbjct: 207 KR 208


>gi|80979091|gb|ABB54748.1| Dicer-2 [Drosophila melanogaster]
          Length = 1715

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 1/95 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +S LEK +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1424 INHSYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1483

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
                  G L+   ++LV+  T + +     L  FI
Sbjct: 1484 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFI 1518


>gi|80979099|gb|ABB54752.1| Dicer-2 [Drosophila melanogaster]
          Length = 1715

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 1/95 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +S LEK +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1424 INHSYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1483

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
                  G L+   ++LV+  T + +     L  FI
Sbjct: 1484 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFI 1518


>gi|80979097|gb|ABB54751.1| Dicer-2 [Drosophila melanogaster]
          Length = 1715

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 1/95 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +S LEK +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1424 INHSYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1483

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
                  G L+   ++LV+  T + +     L  FI
Sbjct: 1484 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFI 1518


>gi|328772805|gb|EGF82843.1| hypothetical protein BATDEDRAFT_23044 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 1492

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 88/189 (46%), Gaps = 38/189 (20%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHFDSAK 67
            +E  + Y F ++S+L +ALTHSS S S    +Y+RLEFLGD +L  +I+  L+    S+ 
Sbjct: 1223 IEAVLNYTFQDKSILWEALTHSSSSFSICGLNYQRLEFLGDAVLSFIITKYLYTQLGSSS 1282

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIRV-----------------------SSDLR 104
             G +S   + +V  +  + V+  L L  ++RV                       +  ++
Sbjct: 1283 PGVISHLKSEMVCNQFLACVSIRLGLIDWLRVKKSDTVWIVDAYAQQVIEHLSQPADSIQ 1342

Query: 105  KDVCSFMTS---IQADVVESLIAALYLDG--GIE-----VAGTFVDKYWKQRALKSGKFR 154
            K   + MT+   I  DV E+++ A+++D    IE     V  + +  +W   +    +  
Sbjct: 1343 KIFWAHMTTAPKICGDVYEAILGAIFVDSKFSIEKVDEFVLNSLIKPWWDHFS----QIV 1398

Query: 155  RDAKTELQE 163
            +D K  LQ 
Sbjct: 1399 QDGKVVLQN 1407



 Score = 44.7 bits (104), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 56/127 (44%), Gaps = 14/127 (11%)

Query: 17   FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV-RF 75
            F N   L+  L  SS    Y  SYERLE LGD  L +  S  LF    S  EG L+  R 
Sbjct: 1048 FINIETLQTVLVASSTDLPY--SYERLEILGDSFLKIHQSLHLFALNPSQDEGWLTTSRM 1105

Query: 76   NSLVSAETCSQVARELDLASFIRVSSDLRKD----------VCSFMTSIQADVVESLIAA 125
             +  + E C + A E+ L   I  +   RK           + S    I ADV E++I  
Sbjct: 1106 VAEQNLELCRR-ATEVGLQGLILTTRFSRKQWVPPAKGHDSMQSMPKKILADVTEAIIGG 1164

Query: 126  LYLDGGI 132
              +DGGI
Sbjct: 1165 CLIDGGI 1171


>gi|195124758|ref|XP_002006854.1| GI21295 [Drosophila mojavensis]
 gi|193911922|gb|EDW10789.1| GI21295 [Drosophila mojavensis]
          Length = 1728

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTH-SSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  LEK +GY F +R+ L +ALTH S+ ++     Y+ LEF+GD IL  LIS  +F H
Sbjct: 1438 INHQYLEKNLGYTFCDRAYLLQALTHPSNPTNRLTGCYQELEFIGDAILDFLISAYIFEH 1497

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVA 88
                  G+L+   ++LV+  T + + 
Sbjct: 1498 KTRMTPGQLTDLRSALVNNTTLACIC 1523


>gi|196229194|ref|ZP_03128059.1| dsRNA-specific ribonuclease [Chthoniobacter flavus Ellin428]
 gi|196226426|gb|EDY20931.1| dsRNA-specific ribonuclease [Chthoniobacter flavus Ellin428]
          Length = 69

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 3/64 (4%)

Query: 9  LEKRIGYAFANRSLLEKALTHSSISHSYQESY---ERLEFLGDRILGLLISTLLFNHFDS 65
          LE+RI Y F N  LL +ALTH S+ H  Q  +   +RLEFLGD +L L+ +  LF+ F  
Sbjct: 4  LEQRIKYKFRNSLLLAEALTHPSLGHETQRHHFDNQRLEFLGDAVLQLIFTEYLFDQFPR 63

Query: 66 AKEG 69
           + G
Sbjct: 64 LQRG 67


>gi|156553056|ref|XP_001605287.1| PREDICTED: similar to dicer-1 [Nasonia vitripennis]
          Length = 1917

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 60/126 (47%), Gaps = 1/126 (0%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y +LE+ IGY F NRS L +A TH+S   +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1657 YDSLERSIGYTFRNRSYLLQAFTHASYQPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1716

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
                G L+   ++LV+    + +A       + R  S     V      IQ +   S+  
Sbjct: 1717 QHSPGALTDLRSALVNNTIFASLAVRCGFHKYFRHLSPGLNTVIDRFVRIQEENGHSISE 1776

Query: 125  ALYLDG 130
              YL G
Sbjct: 1777 EYYLIG 1782



 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 14   GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            G++  + SL+ +ALT S+ +     + ERLE +GD  L   I+T LF  +++  EG+LS
Sbjct: 1370 GHSGPSPSLILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLFCTYNNIHEGKLS 1426


>gi|313204618|ref|YP_004043275.1| ribonuclease iii [Paludibacter propionicigenes WB4]
 gi|312443934|gb|ADQ80290.1| ribonuclease III [Paludibacter propionicigenes WB4]
          Length = 277

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 78/152 (51%), Gaps = 18/152 (11%)

Query: 26  ALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
           A+ H S+S   +     S ERLEFLGD +L  +++ +L+  +   +EG L+   + +V  
Sbjct: 40  AVRHKSVSIPTENGRNLSNERLEFLGDAVLNSVVTDILYRRYKEEREGFLTNTRSKIVKR 99

Query: 82  ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141
           ++ +++A E+ L   ++V+  +     +   +I  + +E+L+ A+YLD G +    FV+ 
Sbjct: 100 DSLNKLALEIGLDKLVKVTKYVNAHTNN---NIYGNALEALLGAIYLDYGYKKCKKFVE- 155

Query: 142 YWKQRALKS-------GKFRRDAKTELQEWAH 166
              QR  KS        +   + K++L EW  
Sbjct: 156 ---QRLFKSFVNLDKVAENEVNFKSKLIEWCQ 184


>gi|242008637|ref|XP_002425109.1| dicer-1, putative [Pediculus humanus corporis]
 gi|212508774|gb|EEB12371.1| dicer-1, putative [Pediculus humanus corporis]
          Length = 471

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 61/108 (56%), Gaps = 2/108 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           Y+ LE+ +GY F  + LL +A+TH S + +     Y+RLEFLGD IL  L++  +  +F 
Sbjct: 220 YTDLEETLGYTFKRKELLLEAITHPSYVRNRLTPCYQRLEFLGDAILDFLVTVYIQENFK 279

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASF-IRVSSDLRKDVCSFM 111
               G ++   ++LV+  T + ++ + D   + +  SS L K + +F+
Sbjct: 280 DMNPGLITDIRSALVNNSTLACLSVKYDFHKYLLYTSSPLNKCIENFV 327


>gi|6714410|gb|AAF26098.1|AC012328_1 unknown protein [Arabidopsis thaliana]
          Length = 2042

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 22/145 (15%)

Query: 9    LEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            +E  + Y+F ++SLL +ALTH S +       Y+RLEFLGD +L  LI+  L++ +    
Sbjct: 1806 MESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYPCLS 1865

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIRVSS-----DLRKDVCSF-MTSIQA----- 116
             G L+   ++ V+ E  + VA + +L   I  +S      + + V  F  +S+Q+     
Sbjct: 1866 PGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQSTFGWE 1925

Query: 117  ----------DVVESLIAALYLDGG 131
                      DV+ESL  A+++D G
Sbjct: 1926 SDISFPKVLGDVIESLAGAIFVDSG 1950


>gi|289425710|ref|ZP_06427468.1| RNase3 domain protein [Propionibacterium acnes SK187]
 gi|289153883|gb|EFD02586.1| RNase3 domain protein [Propionibacterium acnes SK187]
          Length = 146

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 58/107 (54%), Gaps = 2/107 (1%)

Query: 23  LEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
           L  ALTH S ++   +  + ERLEFLGD +LGL +++ L+  + S  E ++S    S+VS
Sbjct: 38  LRLALTHRSFANENGHLPNNERLEFLGDAVLGLSVASQLYITYPSRPESDISKMRASIVS 97

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
               S +ARE++L   I +    +        SI AD  E++  A+Y
Sbjct: 98  RYGLSDIAREINLGPHILLGKGEQSTGGRDKDSILADTTEAIFGAIY 144


>gi|261749614|ref|YP_003257300.1| ribonuclease III [Blattabacterium sp. (Periplaneta americana) str.
           BPLAN]
 gi|261497707|gb|ACX84157.1| ribonuclease III [Blattabacterium sp. (Periplaneta americana) str.
           BPLAN]
          Length = 251

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 106/232 (45%), Gaps = 26/232 (11%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHS------SISHSYQESYERLEFLGDRILGLLI 55
           +++  S L+K +G+   N  LL+    +S      ++  +Y   ++RLEFLGD +L  +I
Sbjct: 14  NSILVSRLKKILGFCPKNLKLLKDVFIYSFSTKRKTLDKNYFLDFQRLEFLGDAVLNSII 73

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLAS-FIRVSSDLRKDVCSFMTSI 114
           S  L       KEGEL+   + +V  +  ++++++L LA  F + +  +  +      +I
Sbjct: 74  SHFLCEKLPEKKEGELTQVRSKIVCRKNLNEISKKLTLAEVFFQNNQPIISE------NI 127

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA---KTELQEWAHA-KFG 170
             + +E+LI  +YL+ G +    FV K      +   + + +    K  + EW+   KF 
Sbjct: 128 LGNTLEALIGFIYLEIGYQGCKNFVYKKILHYHVNITQLQNEISSYKVWVIEWSQKNKFI 187

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLA------PAQGMDCSKRAAEQVAA 216
           +      TFR   +      V+   S           +G   SK+ +E++AA
Sbjct: 188 INFN---TFRETKEEIENKHVITYFSEFTISRCGIKTEGRGPSKKKSEEMAA 236


>gi|17552834|ref|NP_498761.1| DiCer Related family member (dcr-1) [Caenorhabditis elegans]
 gi|21431882|sp|P34529|DCR1_CAEEL RecName: Full=Endoribonuclease dcr-1
 gi|15145374|gb|AAA28101.2| Dicer related protein 1, partially confirmed by transcript evidence
            [Caenorhabditis elegans]
          Length = 1845

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 107/258 (41%), Gaps = 46/258 (17%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
             +++ LE++IGY F  R+ L +A TH+S I++     Y+RLEFLGD +L  +I+  LF  
Sbjct: 1576 FQFTQLEEKIGYRFKERAYLVQAFTHASYINNRVTGCYQRLEFLGDAVLDYMITRYLFED 1635

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLAS-FIRVSSDLRK------DVCS---FMT 112
                  G L+   ++LV+    + +A + +    FI +   L         +CS   F T
Sbjct: 1636 SRQYSPGVLTDLRSALVNNTIFASLAVKFEFQKHFIAMCPGLYHMIEKFVKLCSERNFDT 1695

Query: 113  SIQA--------------------------DVVESLIAALYLDGGIEVAGTFVDKYWKQR 146
            +  A                          D+ ES+  A+YLD G  +  T+   +   R
Sbjct: 1696 NFNAEMYMVTTEEEIDEGQEEDIEVPKAMGDIFESVAGAIYLDSGRNLDTTWQVIFHMMR 1755

Query: 147  A---LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203
                L      R    EL E+  +K   +   ++   SG     +  V VE+       G
Sbjct: 1756 GTIELCCANPPRSPIRELMEFEQSKVRFSKMERI-LESG-----KVRVTVEVVNNMRFTG 1809

Query: 204  MDCSKRAAEQVAAAEVLK 221
            M  + R A+  AA   LK
Sbjct: 1810 MGRNYRIAKATAAKRALK 1827


>gi|149732822|ref|XP_001500801.1| PREDICTED: ribonuclease type III, nuclear isoform 3 [Equus caballus]
          Length = 1192

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%)

Query: 28   THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
            T S I+H+     ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +
Sbjct: 921  TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 975

Query: 88   ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135
            A++L+L  F+  +     D+C  S +    A+  E+LI A+YL+G +E A
Sbjct: 976  AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1023



 Score = 55.5 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 2/91 (2%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  ++  +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1069 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1128

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDL 93
            F    EG L++  +SLV+  T ++VA EL +
Sbjct: 1129 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGM 1159


>gi|145338056|ref|NP_566199.4| DCL2 (DICER-LIKE 2); ATP binding / ATP-dependent helicase/ RNA
            binding / double-stranded RNA binding / helicase/ nucleic
            acid binding / ribonuclease III [Arabidopsis thaliana]
 gi|322518659|sp|Q3EBC8|DCL2_ARATH RecName: Full=Endoribonuclease Dicer homolog 2; AltName:
            Full=Dicer-like protein 2; Short=AtDCL2
 gi|332640403|gb|AEE73924.1| protein dicer-like 2 [Arabidopsis thaliana]
 gi|332640405|gb|AEE73926.1| protein dicer-like 2 [Arabidopsis thaliana]
          Length = 1388

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 22/145 (15%)

Query: 9    LEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            +E  + Y+F ++SLL +ALTH S +       Y+RLEFLGD +L  LI+  L++ +    
Sbjct: 1152 MESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYPCLS 1211

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIRVSS-----DLRKDVCSF-MTSIQA----- 116
             G L+   ++ V+ E  + VA + +L   I  +S      + + V  F  +S+Q+     
Sbjct: 1212 PGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQSTFGWE 1271

Query: 117  ----------DVVESLIAALYLDGG 131
                      DV+ESL  A+++D G
Sbjct: 1272 SDISFPKVLGDVIESLAGAIFVDSG 1296


>gi|94450854|gb|ABF19797.1| dicer-like 2 spliceform 1 [Arabidopsis thaliana]
          Length = 1386

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 22/145 (15%)

Query: 9    LEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            +E  + Y+F ++SLL +ALTH S +       Y+RLEFLGD +L  LI+  L++ +    
Sbjct: 1150 MESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYPCLS 1209

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIRVSS-----DLRKDVCSF-MTSIQA----- 116
             G L+   ++ V+ E  + VA + +L   I  +S      + + V  F  +S+Q+     
Sbjct: 1210 PGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQSTFGWE 1269

Query: 117  ----------DVVESLIAALYLDGG 131
                      DV+ESL  A+++D G
Sbjct: 1270 SDISFPKVLGDVIESLAGAIFVDSG 1294


>gi|195023643|ref|XP_001985724.1| GH20958 [Drosophila grimshawi]
 gi|193901724|gb|EDW00591.1| GH20958 [Drosophila grimshawi]
          Length = 1713

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 1/104 (0%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTH-SSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +S LE  +GY F +R+ L +ALTH S+ ++     Y+ LEF+GD IL  LIS  +F H
Sbjct: 1421 INHSALEHNLGYTFRDRAYLLQALTHPSNPTNRLTGCYQELEFVGDAILDFLISAYIFEH 1480

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD 106
                  G+L+   ++LV+  T + +     +  FI   + +  D
Sbjct: 1481 KTRMTPGQLTDLRSALVNNTTLACICVRHRIHFFILAENAMLSD 1524


>gi|240247227|emb|CAX68236.1| dicer-1 [Blattella germanica]
          Length = 2271

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 105/253 (41%), Gaps = 55/253 (21%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y   E+RI Y F +RS L ++LTH+S S +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 2015 YDVFERRIRYKFRDRSYLLQSLTHASYSPNRLTDCYQRLEFLGDAVLDYLITRHLYEDSR 2074

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ--------- 115
                G L+   ++LV+    + +A       + R  S    +V      IQ         
Sbjct: 2075 QHSPGALTDLRSALVNNTIFASLAVRYGFHKYFRHLSPGLNEVVDRFVRIQEENGHTISE 2134

Query: 116  ----------------------ADVVESLIAALYLDGGIEVAGTFVDKYWK--QRALKS- 150
                                   DV ES+  A++LD G+      +D  W+   R +KS 
Sbjct: 2135 EYYLIEEEECEEAEDVEVPKALGDVFESVAGAIFLDSGMS-----LDAVWRVYYRMMKSE 2189

Query: 151  -GKFRRD-AKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203
              +F  +  K+ ++E        AKFG  PE     R       R  V VE+ G    +G
Sbjct: 2190 IEQFSTNVPKSPIRELLELEPETAKFG-KPEKLADGR-------RVRVTVEVFGKGTFKG 2241

Query: 204  MDCSKRAAEQVAA 216
            +  + R A+  AA
Sbjct: 2242 IGRNYRIAKCTAA 2254


>gi|225462996|ref|XP_002264486.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296084589|emb|CBI25610.3| unnamed protein product [Vitis vinifera]
          Length = 1623

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 112/243 (46%), Gaps = 41/243 (16%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            LEK +G+ F ++ LL +A+ H S +      Y+RLEFLGD +L  LI++ L++ +   K 
Sbjct: 1202 LEKLLGHEFLHKGLLLQAIVHPSYNKHGGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKP 1261

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFMTSIQ------------ 115
            G+++   +  V+ ++ + VA    L  F+   +S L + +  ++  I+            
Sbjct: 1262 GQMTDLRSLSVNNKSFANVAVSRSLHEFLICDASSLSEAIKKYVDFIRTPTLDKDLHEGP 1321

Query: 116  ------ADVVESLIAALYLDGGIEVAGTFVDKYWK------QRALKSGKFRRDAKTELQE 163
                   D+VES + A+ LD G +     ++  W        R +     + +   ELQE
Sbjct: 1322 KCPKALGDLVESCMGAILLDKGFD-----LNHAWNIMLSILDRIMSFSDLQLNPIRELQE 1376

Query: 164  WA-HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG---LAPAQGMDCSKRAAEQVAAAEV 219
               H  + +  ++  + + G      F V  ++SG      A   + +++ A ++A+ ++
Sbjct: 1377 LCQHHNWDL--QFPTSKQGG-----TFLVEAKVSGDDICTTASATNANRKDARRIASNQL 1429

Query: 220  LKR 222
             K+
Sbjct: 1430 FKK 1432



 Score = 40.0 bits (92), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 56/138 (40%), Gaps = 37/138 (26%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
            S ERLE LGD  L   +   LF  +D+  EGEL+ R +++V+     ++A   +L  +IR
Sbjct: 1029 SLERLEVLGDAFLKFAVGRRLFLLYDALDEGELTRRRSNVVNNSNLFKLAVRRNLQVYIR 1088

Query: 99   -----------------------------------VSSDLRKDVCS--FMTSIQADVVES 121
                                                ++++R   C         ADVVE+
Sbjct: 1089 DQSFDPGQFFALGHRCPRICEKETEMAIHSRCGKTPTTEVRCSKCHHWLHKKTIADVVEA 1148

Query: 122  LIAALYLDGGIEVAGTFV 139
            L+ A  +D G + A  F+
Sbjct: 1149 LVGAFIVDSGFKAATVFL 1166


>gi|330802362|ref|XP_003289187.1| hypothetical protein DICPUDRAFT_79950 [Dictyostelium purpureum]
 gi|325080763|gb|EGC34305.1| hypothetical protein DICPUDRAFT_79950 [Dictyostelium purpureum]
          Length = 1059

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 28/158 (17%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHS-----------YQESY------ERLEFL 46
           +R +    RI  +  +  +L +A TH S   S           +++ Y      +RLE+L
Sbjct: 736 VRLAQFNTRI-VSLKSYKILREAFTHPSTKASNRLIPPSELPMFKDYYPYLGDNQRLEYL 794

Query: 47  GDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS--DLR 104
           GD +L L  S  LF  +  +KEG LS+   + +  +   +V++ + L   +R+S+  +++
Sbjct: 795 GDSVLKLASSIYLFYKYSGSKEGALSMERANNIKNDNLIEVSKRMHLDEILRLSNSDEIK 854

Query: 105 KDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
           K          ADV+E+L  A+ LD G E A   + +Y
Sbjct: 855 KP--------HADVIEALFGAISLDRGFEKAYEIIVRY 884



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 10/122 (8%)

Query: 21   SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
            SLLE+A +  +       +Y+RLEF+GD +L  + +  L+  F    EG L+   + LV 
Sbjct: 924  SLLEEAFSSGT-----NVNYQRLEFVGDGVLDYITADYLYKEFPEYNEGTLTEFRSRLVR 978

Query: 81   AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140
                S  ++ L L   I       ++  +       D  ESL+  L LD G+E    FV 
Sbjct: 979  NNNLSDASKRLKLPPNIT-----DEERAALPPKRLGDYFESLVGCLVLDRGVEETKQFVK 1033

Query: 141  KY 142
            K+
Sbjct: 1034 KH 1035


>gi|114600831|ref|XP_001156889.1| PREDICTED: ribonuclease III, nuclear isoform 1 [Pan troglodytes]
          Length = 1189

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%)

Query: 28   THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
            T S I+H+     ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +
Sbjct: 921  TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 975

Query: 88   ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135
            A++L+L  F+  +     D+C  S +    A+  E+LI A+YL+G +E A
Sbjct: 976  AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1023



 Score = 55.5 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 2/91 (2%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  ++  +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1069 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1128

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDL 93
            F    EG L++  +SLV+  T ++VA EL +
Sbjct: 1129 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGM 1159


>gi|32450506|gb|AAH54003.1| RNASEN protein [Homo sapiens]
          Length = 1192

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 9/110 (8%)

Query: 28   THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
            T S I+H+     ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +
Sbjct: 921  TPSRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAML 975

Query: 88   ARELDLASFIRVSSDLRKDVC--SFMTSIQADVVESLIAALYLDGGIEVA 135
            A++L+L  F+  +     D+C  S +    A+  E+LI A+YL+G +E A
Sbjct: 976  AKKLELDRFMLYAHG--PDLCRESDLRHAMANCFEALIGAVYLEGSLEEA 1023



 Score = 55.5 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 2/91 (2%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  ++  +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1069 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1128

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDL 93
            F    EG L++  +SLV+  T ++VA EL +
Sbjct: 1129 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGM 1159


>gi|302693114|ref|XP_003036236.1| hypothetical protein SCHCODRAFT_31237 [Schizophyllum commune H4-8]
 gi|300109932|gb|EFJ01334.1| hypothetical protein SCHCODRAFT_31237 [Schizophyllum commune H4-8]
          Length = 1342

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 88/186 (47%), Gaps = 28/186 (15%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHF 63
            +S L+ ++GY F +  LL +ALTHSS +   SY  SYERLEFLGD ++ L +   L+  F
Sbjct: 1086 FSELQAKLGYTFRDGGLLCEALTHSSFASLDSYG-SYERLEFLGDAVINLAVVDYLYRKF 1144

Query: 64   DSAKEGELSVR-----FNSLVSAETC-------SQVARELDLASFIRVSSDLRKDVCSF- 110
              A   +LS+       N  +SA +        S +   ++L+  I   + + +D     
Sbjct: 1145 PDANSDQLSLPRARAVCNQALSALSVKHLQLHKSVLVNNVELSIAINKHAPILEDKPYPE 1204

Query: 111  ---------MTSIQADVVESLIAALYLDGG--IEVAGTFVDKYWKQRALK-SGKFRRDAK 158
                        + +D+ ES++ A+++D G   E+    V++  +   +  S    RD  
Sbjct: 1205 ILVKGWKLDPPKVLSDIFESIVGAVFVDTGYDYEITAAVVEQAMEGLLVHLSPAMPRDPV 1264

Query: 159  TELQEW 164
            +EL  W
Sbjct: 1265 SELIIW 1270



 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 16/137 (11%)

Query: 13   IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            +G  +  R LL +ALT       +    +RLE LGD +L L  +  LFN +    EG+L+
Sbjct: 919  LGLPYIERDLLIQALTLPCAGMPFNN--QRLETLGDAVLELSTTVHLFNKYPHRHEGQLT 976

Query: 73   VRFNSLVSAETCSQVARELDLASFIRVSS------DLRKDV-----CS---FMTSIQADV 118
                  +S +     ARE+ L  F+   +      D  +D      C+   F      D 
Sbjct: 977  PLRQICISNKCLLTRAREVQLERFLTSETHSLSIWDYVEDSEVPARCARRLFPRRSLQDC 1036

Query: 119  VESLIAALYLDGGIEVA 135
            +E+++ A YL GGI+ A
Sbjct: 1037 MEAILGASYLTGGIDTA 1053


>gi|94450856|gb|ABF19798.1| dicer-like 2 spliceform 2 [Arabidopsis thaliana]
          Length = 1374

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 22/145 (15%)

Query: 9    LEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            +E  + Y+F ++SLL +ALTH S +       Y+RLEFLGD +L  LI+  L++ +    
Sbjct: 1138 MESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYPCLS 1197

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIRVSS-----DLRKDVCSF-MTSIQA----- 116
             G L+   ++ V+ E  + VA + +L   I  +S      + + V  F  +S+Q+     
Sbjct: 1198 PGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQSTFGWE 1257

Query: 117  ----------DVVESLIAALYLDGG 131
                      DV+ESL  A+++D G
Sbjct: 1258 SDISFPKVLGDVIESLAGAIFVDSG 1282


>gi|145331748|ref|NP_001078101.1| DCL2 (DICER-LIKE 2); ATP binding / ATP-dependent helicase/ RNA
            binding / double-stranded RNA binding / helicase/ nucleic
            acid binding / ribonuclease III [Arabidopsis thaliana]
 gi|332640404|gb|AEE73925.1| protein dicer-like 2 [Arabidopsis thaliana]
          Length = 1374

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 22/145 (15%)

Query: 9    LEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            +E  + Y+F ++SLL +ALTH S +       Y+RLEFLGD +L  LI+  L++ +    
Sbjct: 1138 MESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYPCLS 1197

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIRVSS-----DLRKDVCSF-MTSIQA----- 116
             G L+   ++ V+ E  + VA + +L   I  +S      + + V  F  +S+Q+     
Sbjct: 1198 PGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQSTFGWE 1257

Query: 117  ----------DVVESLIAALYLDGG 131
                      DV+ESL  A+++D G
Sbjct: 1258 SDISFPKVLGDVIESLAGAIFVDSG 1282


>gi|328849595|gb|EGF98772.1| hypothetical protein MELLADRAFT_79606 [Melampsora larici-populina
            98AG31]
          Length = 1540

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 31/162 (19%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            ++ L+ +IGY F    LL +ALTH S        YER E+LGD I+ L I+   +  F  
Sbjct: 1107 HTALQHKIGYEFKQPLLLMQALTHRSADSFLTNCYEREEWLGDAIVDLWITEHCYRRFSD 1166

Query: 66   AKEGELSVRFNSLVSA-------------------------ETCSQVARELDLASFIRVS 100
            +   +L+    SLV+                          + C    R  D+ SFI V 
Sbjct: 1167 STAAQLTFTRASLVTNASLGYLSLKKLGLHKMIQHDSRHFEKACDDALR--DIESFIEVG 1224

Query: 101  SDLRKDVCSFMT----SIQADVVESLIAALYLDGGIEVAGTF 138
            S       SF+      I  D +E+++ A+++D G+ ++  +
Sbjct: 1225 SFYDNLTNSFIVFDPPKILGDALEAIVGAIFIDCGLHLSVAY 1266


>gi|2244899|emb|CAB10321.1| UFD1 like protein [Arabidopsis thaliana]
 gi|7268289|emb|CAB78584.1| UFD1 like protein [Arabidopsis thaliana]
          Length = 778

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 17/143 (11%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +   +LEK + Y F ++SLL KA T +S      ESYE LE LGD IL + I       +
Sbjct: 52  MEIESLEKILNYKFKDKSLLLKAFTDASYVDDKSESYELLELLGDSILNMGIIYDFIKLY 111

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-LRKDVCSFMTSIQ------- 115
                G L+      V  E  ++VA    L S++R     L + +  F+ +++       
Sbjct: 112 PKEAPGPLTKLRAVNVDTEKLARVAVNHQLYSYLRHKKPLLEEQILEFVEAMEKYPLHSN 171

Query: 116 ---------ADVVESLIAALYLD 129
                    AD+VES I A+++D
Sbjct: 172 GLLKVPKVLADIVESTIGAIFMD 194


>gi|328947077|ref|YP_004364414.1| ribonuclease III [Treponema succinifaciens DSM 2489]
 gi|328447401|gb|AEB13117.1| ribonuclease III [Treponema succinifaciens DSM 2489]
          Length = 369

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 11/132 (8%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHF--- 63
           ++  I Y F N  LLE+A T  S S  + E  + E LEF GD IL   ++ +++  F   
Sbjct: 9   VQSSINYQFKNLQLLEQAFTRKSYSEEHPELQNNEVLEFYGDEILDFFVTKMMYKRFSRI 68

Query: 64  ------DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
                     EGEL+   + LVS E+ ++    +  + F+ +     K+      S+  D
Sbjct: 69  LNNELVSEKNEGELTKLKSILVSKESLARCMYNIGFSKFLYLGKSDEKNEVYKSKSVNED 128

Query: 118 VVESLIAALYLD 129
           + E++I A+  D
Sbjct: 129 LFEAIIGAVAAD 140


>gi|322694902|gb|EFY86720.1| abhydrolase domain-containing protein [Metarhizium acridum CQMa
           102]
          Length = 333

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 16/142 (11%)

Query: 29  HSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVA 88
           H  +S   + SYERLE+LGD  L L+ S+L++  F S   G  S     L+  +T +Q  
Sbjct: 73  HPGLSDPLR-SYERLEWLGDAYLELIASSLIYQTFTSTPTGRCSQLREILIRNKTLAQYF 131

Query: 89  RELDLASFIRVSSDLRKDVCSFMTS--------IQADVVESLIAALYL---DGGIEVAGT 137
           RE  L S   + SDL+ D+     S         QAD+ E+ +AA  +   + G+    +
Sbjct: 132 REYGLESKAHLPSDLKTDISRSRGSSSDKDIIKTQADMFEAYVAAAIISDPENGMANTAS 191

Query: 138 FVDKYW----KQRALKSGKFRR 155
           ++   W    K + L + K R+
Sbjct: 192 WLKSLWARTIKNQILNNEKNRK 213


>gi|283827860|gb|ADB44075.1| dicer-1 [Marsupenaeus japonicus]
          Length = 2482

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 106/258 (41%), Gaps = 56/258 (21%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y   E++IGY F +RS L +A TH+S   +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 2226 YQVFEEKIGYTFQDRSYLLQAFTHASYYKNRLTDCYQRLEFLGDAVLDYLITRHLYEDKR 2285

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ-------- 115
                G L+   ++LV+    + +A + D   + R  S  L + +  F+   +        
Sbjct: 2286 QHSPGALTDLRSALVNNTIFASLAVKYDYHKYFRHFSPGLDRVIRDFVKMQEENGHKINE 2345

Query: 116  ----------------------ADVVESLIAALYLDGGIEVAGTFVDKYW--------KQ 145
                                   DV ES+  A++LD     +G+ +D  W        ++
Sbjct: 2346 EYYFMEEDECEAAEDIEVPKALGDVFESVAGAIFLD-----SGSSLDAVWSVYYTMMCRE 2400

Query: 146  RALKSGKFRRDAKTEL--QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203
                SG   +    EL   E   AKFG  PE  V        D +  V VEI G     G
Sbjct: 2401 IEQFSGVVPKSPIRELLEMEPETAKFG-KPERLV--------DGKVRVSVEIFGKGSFSG 2451

Query: 204  MDCSKRAAEQVAAAEVLK 221
            +  + R A+  AA   L+
Sbjct: 2452 VGRNYRIAKSTAAKRALR 2469


>gi|170091728|ref|XP_001877086.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164648579|gb|EDR12822.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1358

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 73/167 (43%), Gaps = 31/167 (18%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
            S +E+ IG+ F    LL +ALTHSS+      SY RLEF+GD IL  ++   +FN   + 
Sbjct: 1075 SAIERIIGHNFQRPHLLAQALTHSSMQGHESASYGRLEFIGDAILDFMVIQHIFNRDQTL 1134

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
              G L++   ++VS    + V           VSS LRK +              L  + 
Sbjct: 1135 SPGALTLLKGAMVSNSALAAVC----------VSSGLRKHL--------------LFESY 1170

Query: 127  YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP 173
             L G IEV    +    ++  L +    R+ ++  Q W     G+ P
Sbjct: 1171 QLAGSIEVYANELKARQQKEYLAA---EREGRSPGQYW----LGIEP 1210


>gi|157285011|gb|ABV31245.1| dicer-like 3 [Physcomitrella patens]
          Length = 1641

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 74/159 (46%), Gaps = 29/159 (18%)

Query: 9    LEKRIGYAFANRSLLEKALTH-SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             EKRIGY F N  L  +ALTH S++       Y+RLEFLGD +L  L++  LF    ++ 
Sbjct: 1353 FEKRIGYTFKNIYLPLEALTHFSNMVGDQIRCYQRLEFLGDAVLDFLLTRHLFTSHPTST 1412

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-LRKDVCSFMTSIQA---------- 116
             G L+    + V+ E  ++VA +  L  ++R  S  L   +  F+ S +A          
Sbjct: 1413 PGLLTSLRTASVNNERFARVAVKHRLHCYLRHGSGRLLHQIEEFVKSFEAADDDQKNSSF 1472

Query: 117  ------------DVVESLIAALYLDGGIEVAGTFVDKYW 143
                        D+VES+  A+ +D   +     +DK W
Sbjct: 1473 GLNGLEAPKVLGDLVESIAGAILVDTCFD-----LDKVW 1506


>gi|302664704|ref|XP_003023979.1| nucleolar RNAse III, putative [Trichophyton verrucosum HKI 0517]
 gi|291188003|gb|EFE43361.1| nucleolar RNAse III, putative [Trichophyton verrucosum HKI 0517]
          Length = 452

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 70/138 (50%), Gaps = 11/138 (7%)

Query: 16  AFANRSLLEKALTHSSI-------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
              + SL     TH+ I       + + +++Y+RLE LGD  + L+ + L++ +F +   
Sbjct: 185 PIGDESLKTAVFTHTGIMERGPVSTQTSEKTYDRLEVLGDAYIELISTRLIWENFPTLPA 244

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+++    ++V  ET ++ A        ++ SSD+ K+V    T +  DV E+ +AA  +
Sbjct: 245 GKIAQARETMVKNETLAEYAIAYGFDRLLKTSSDI-KNVPKRWTKVMGDVFEAYVAAAII 303

Query: 129 ---DGGIEVAGTFVDKYW 143
               GG++   +++ + W
Sbjct: 304 ADPKGGLQAVESWLTQLW 321


>gi|308485595|ref|XP_003104996.1| CRE-DCR-1 protein [Caenorhabditis remanei]
 gi|308257317|gb|EFP01270.1| CRE-DCR-1 protein [Caenorhabditis remanei]
          Length = 1941

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 37/171 (21%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
            +++ LE+RIGY F  R+ L +A TH+S I++     Y+RLEFLGD +L  +I+  LF   
Sbjct: 1673 QFANLEERIGYRFKERAYLVQAFTHASYINNRVTGCYQRLEFLGDAVLDYMITRYLFEDV 1732

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELD---------------LASFIRVSSDLRKDVC 108
                 G L+   ++LV+    + +A + +               +  F+++ +D   D  
Sbjct: 1733 RQYSPGVLTDLRSALVNNTIFASLAVKFEFQKHFIAMCPGLHHMIEKFVKLCADRNFDTN 1792

Query: 109  ----SFMTSIQ-----------------ADVVESLIAALYLDGGIEVAGTF 138
                 +M + +                  DV ES+  A+YLD G  +  T+
Sbjct: 1793 FNAEMYMVTTEEEIDEGHEEDVEVPKALGDVFESVAGAIYLDSGRNLDTTW 1843


>gi|307198394|gb|EFN79336.1| Endoribonuclease dcr-1 [Harpegnathos saltator]
          Length = 1479

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 34/162 (20%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
            ++EKR+GY F NR+ L +A TH S S +   + Y+RLEFLGD +L  LI+  ++    + 
Sbjct: 1278 SIEKRLGYKFNNRAYLLQAFTHPSYSVNRITDCYQRLEFLGDAVLDFLITCHIYEFCGNL 1337

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLAS---------------FIRVSSDLRKDV---- 107
              G L+   ++LV+  T + +A    L +               F++   D    +    
Sbjct: 1338 SPGALTDLRSALVNNITFACLAVRYGLHTCLLAYAPQLHEMINRFVKFQEDRNYAINDEL 1397

Query: 108  ---------CSFMTSIQ-----ADVVESLIAALYLDGGIEVA 135
                     C+    I       D+ E+LI A+YLD    +A
Sbjct: 1398 LWVLLEEEDCNIAEYIDVPKVLGDLFETLIGAIYLDSNRNLA 1439


>gi|87240866|gb|ABD32724.1| Helicase, C-terminal; Argonaute and Dicer protein, PAZ; Ribonuclease
            III, bacterial [Medicago truncatula]
          Length = 1939

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 74/158 (46%), Gaps = 23/158 (14%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            + ++ +  LE  +   F ++ LL +++TH+S   S    Y+RLEF+GD +L  LI+  LF
Sbjct: 1596 LRSVDFDALEGALNIKFKDKGLLIESITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 1655

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFMTSIQ---- 115
              +     G L+    + V+ E  ++V  + +L   +R  SS L K +  F+  +Q    
Sbjct: 1656 FSYTDLPPGRLTDLRAAAVNNENFARVTVKHNLHLHLRHGSSALEKQIKDFVKEVQDELS 1715

Query: 116  ------------------ADVVESLIAALYLDGGIEVA 135
                               D++ES+  A++LD G   A
Sbjct: 1716 KPGFNSFGLGDCKAPKVLGDILESIAGAIFLDSGRNTA 1753


>gi|294993977|ref|ZP_06799668.1| ribonuclease III [Mycobacterium tuberculosis 210]
          Length = 188

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 71/148 (47%), Gaps = 6/148 (4%)

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCS 109
           + I+  LF+      EG+L+    S+V+ +  + VAR L    L   + +         +
Sbjct: 1   MTITDALFHRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGA 60

Query: 110 FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHA 167
             +SI AD +ESL+ A+YL  G+E A   + + +     A  +     D KT LQE   A
Sbjct: 61  DKSSILADGMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAA 120

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
           +    P Y VT  +GPDHD  FT VV +
Sbjct: 121 RGLGAPSYLVT-STGPDHDKEFTAVVVV 147


>gi|114654621|ref|XP_001154071.1| PREDICTED: dicer1 isoform 2 [Pan troglodytes]
          Length = 1868

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 33/176 (18%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S  + +  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1666 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1725

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSF------------- 110
                G L+   ++LV+    + +A + D   + + VS +L   +  F             
Sbjct: 1726 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1785

Query: 111  ------------------MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL 148
                              +     D+ ESL  A+Y+D G+ +   +   Y   R L
Sbjct: 1786 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPL 1841



 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 13   IGYAF----ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            IGY+      N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A E
Sbjct: 1283 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1340

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVS 100
            G LS   +  VS     ++ ++  L S + VS
Sbjct: 1341 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1372


>gi|148829108|gb|ABR14013.1| Dicer-1 [Penaeus monodon]
          Length = 2473

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 106/258 (41%), Gaps = 56/258 (21%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y   E++IGY F +RS L +A TH+S   +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 2217 YQVFEEKIGYTFRDRSYLLQAFTHASYYKNRLTDCYQRLEFLGDAVLDYLITRHLYEDKR 2276

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ-------- 115
                G L+   ++LV+    + +A + D   + R  S  L + +  F+   +        
Sbjct: 2277 QHSPGALTDLRSALVNNTIFASLAVKYDYHKYFRHFSPGLDRVIRDFVKMQEENGHKINE 2336

Query: 116  ----------------------ADVVESLIAALYLDGGIEVAGTFVDKYW--------KQ 145
                                   DV ES+  A++LD     +G+ +D  W        ++
Sbjct: 2337 EYYFMEEDECEAAEDIEVPKALGDVFESVAGAIFLD-----SGSSLDAVWSVYYTMMCRE 2391

Query: 146  RALKSGKFRRDAKTEL--QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203
                SG   +    EL   E   AKFG  PE  V        D +  V VEI G     G
Sbjct: 2392 IEQFSGVVPKSPIRELLEMEPETAKFG-KPERLV--------DGKVRVSVEIFGKGSFSG 2442

Query: 204  MDCSKRAAEQVAAAEVLK 221
            +  + R A+  AA   L+
Sbjct: 2443 VGRNYRIAKSTAAKRALR 2460


>gi|255547506|ref|XP_002514810.1| ATP binding protein, putative [Ricinus communis]
 gi|223545861|gb|EEF47364.1| ATP binding protein, putative [Ricinus communis]
          Length = 1388

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 68/145 (46%), Gaps = 22/145 (15%)

Query: 9    LEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            LE  + Y+F +  LL +ALTH S +       Y+RLEFLGD +L  LI+  L+  +    
Sbjct: 1146 LESLLKYSFRDPCLLVEALTHGSYMLPEIPRCYQRLEFLGDSVLDYLITVHLYEKYPGMS 1205

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSFMTS------------- 113
             G L+   ++ V+ +  +Q A    L  +I   S  L KD+ S + +             
Sbjct: 1206 PGLLTDMRSASVNNDCYAQSAVREGLHKYILHASQKLHKDIVSTVANCKEFSSESTFGWE 1265

Query: 114  -------IQADVVESLIAALYLDGG 131
                   +  DV+ESL  A+++D G
Sbjct: 1266 SEISFPKVLGDVIESLAGAIFVDSG 1290



 Score = 39.7 bits (91), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 56/129 (43%), Gaps = 30/129 (23%)

Query: 41   ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
            E LE LGD  L   +   LF  + +  EG LS++ + L+S  T  ++  +  +  FIR  
Sbjct: 989  ESLETLGDSFLKYAVGQQLFKTYQNHHEGLLSIKKDKLISNATLCRLGCDSKIPGFIRNE 1048

Query: 101  S----------------DLRKDVCS------------FMTSIQADVVESLIAALYLDGGI 132
            S                 L +++ S                + ADVVE+LI A YL  G 
Sbjct: 1049 SFDPKNWLIPDEISGCYSLSEEILSNGRKMYIKRRRKLKEKMIADVVEALIGA-YLSTGG 1107

Query: 133  EVAG-TFVD 140
            E+AG  F+D
Sbjct: 1108 EIAGLLFLD 1116


>gi|310798327|gb|EFQ33220.1| RNase3 domain-containing protein [Glomerella graminicola M1.001]
          Length = 1532

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 30/155 (19%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66
            +++ +GY F   +LL  A  H S   +Y++  +Y+RLEFLGD +L ++    LF  F  A
Sbjct: 1241 IKENLGYEFKYPALLRSAFKHPSYPRAYEDLPNYQRLEFLGDALLDMVCVDFLFKKFPDA 1300

Query: 67   KEGELSVRFNSLVSAETCSQVARELDL--------ASFIRVSSDL-------RKDV---- 107
                L+    ++VS +  + +  +L L        AS +  + D        ++D     
Sbjct: 1301 DPQWLTEHKTAMVSNQFLACLCVQLGLHKHVLSGHASLLNQTQDFVGVLECAKQDAAADG 1360

Query: 108  ----CSFMTSIQA-----DVVESLIAALYLDGGIE 133
                C ++   QA     DVVE+ I AL++D G +
Sbjct: 1361 TFSQCYWIHVKQAPKFLSDVVEAYIGALFVDSGYD 1395


>gi|160285502|pdb|2EB1|A Chain A, Crystal Structure Of The C-Terminal Rnase Iii Domain Of
           Human Dicer
 gi|160285503|pdb|2EB1|B Chain B, Crystal Structure Of The C-Terminal Rnase Iii Domain Of
           Human Dicer
 gi|160285504|pdb|2EB1|C Chain C, Crystal Structure Of The C-Terminal Rnase Iii Domain Of
           Human Dicer
          Length = 200

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 33/176 (18%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +   EK+I Y F N++ L +A TH+S  + +  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 8   FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSF------------- 110
               G L+   ++LV+    + +A + D   + + VS +L   +  F             
Sbjct: 68  QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 127

Query: 111 ------------------MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL 148
                             +     D+ ESL  A+Y+D G+ +   +   Y   R L
Sbjct: 128 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPL 183


>gi|213408108|ref|XP_002174825.1| dicer [Schizosaccharomyces japonicus yFS275]
 gi|212002872|gb|EEB08532.1| dicer [Schizosaccharomyces japonicus yFS275]
          Length = 1384

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 32/162 (19%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64
            S LE  +GY F +  LL+ A TH+S   + Q   +Y++LEFLGD +L  ++   LF  + 
Sbjct: 1105 SGLESLVGYTFKHPGLLKIAFTHASYVKTTQTAVNYQQLEFLGDAVLDFIVVRYLFKKYQ 1164

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASF-IRVSSDLR---KDVCSFMTSIQ----- 115
            +    EL+   +  V  ++ + V+ +L L  F ++ + D+R   K+  S +  +Q     
Sbjct: 1165 NKTAAELTDTKSFYVCNKSLAYVSFKLGLYDFMLQDNEDIRNAYKEYKSVIDKLQQDTKI 1224

Query: 116  ---------------------ADVVESLIAALYLDGGIEVAG 136
                                 +D+ ES + A+YLD G + + 
Sbjct: 1225 DSNHPTPSEKFWLLIEPPKFLSDIFESFVCAVYLDSGFQFSA 1266



 Score = 35.0 bits (79), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 57/145 (39%), Gaps = 21/145 (14%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            L  R+    + +SLLE + +  S+       Y+R EF GD  L L  S  +F  +    E
Sbjct: 922  LRVRLQAKISTKSLLEASTSPGSV---LPFDYDRYEFYGDTFLKLAASNSVFLSYLWVPE 978

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF------------------ 110
             +L +    ++   T   ++++ DL  F+     + K    F                  
Sbjct: 979  CKLHIERKRIIRNSTLFTISKKHDLPGFLLSEPFVIKTFIPFGYQPTQKSKNKMERSQLL 1038

Query: 111  MTSIQADVVESLIAALYLDGGIEVA 135
                 AD+VES + A   D G++ A
Sbjct: 1039 ANKTVADIVESSLGACLYDSGVDEA 1063


>gi|323126809|gb|ADX24106.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
           ATCC 12394]
          Length = 151

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 70/145 (48%), Gaps = 3/145 (2%)

Query: 78  LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137
           +V  E+ +  +R     ++I++     K       +I  D+ E+ + AL LD G++    
Sbjct: 2   IVREESLAGFSRFCSFDTYIKLGKGEEKSGGRNRDTILGDLFEAFLGALLLDKGVDEVRR 61

Query: 138 FVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
           F+ +    +  K G F +  D KT LQE   +K  +  +Y+V    GP H  +F V V +
Sbjct: 62  FLQQVMIPQVEK-GNFEKVKDYKTCLQELLQSKGDIAIDYQVISEKGPAHAKQFEVAVFV 120

Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVL 220
           +    ++G+  SK+ AEQ AA   L
Sbjct: 121 NEEVLSKGLGKSKKMAEQDAAKNAL 145


>gi|297832974|ref|XP_002884369.1| hypothetical protein ARALYDRAFT_317213 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297330209|gb|EFH60628.1| hypothetical protein ARALYDRAFT_317213 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 2033

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 22/145 (15%)

Query: 9    LEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            +E  + Y+F ++SLL +ALTH S +       Y+RLEFLGD +L  LI+  L++ +    
Sbjct: 1797 MESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYPCLS 1856

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIRVSS-----DLRKDVCSF-MTSIQA----- 116
             G L+   ++ V+ E  + VA + +L   I  +S      + + V  F  +S+Q+     
Sbjct: 1857 PGLLTDMRSASVNNECYALVAVKENLHKHILHASHVLHKHISRTVSEFEQSSLQSTFGWE 1916

Query: 117  ----------DVVESLIAALYLDGG 131
                      DV+ESL  A+++D G
Sbjct: 1917 CDISFPKVLGDVIESLAGAIFVDSG 1941


>gi|316974223|gb|EFV57735.1| putative ribosomal protein S7e [Trichinella spiralis]
          Length = 2029

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 3/62 (4%)

Query: 2    SALRYSTLEKRIGYAFANRSLLEKALTHSS---ISHSYQESYERLEFLGDRILGLLISTL 58
            +A   ++ E +IGY F N++ L +ALTHSS   +     +SYERLEFLGD IL  LIS  
Sbjct: 1763 TAYDLNSFEAKIGYRFTNKAYLIQALTHSSYNEVETPVTDSYERLEFLGDAILDYLISRH 1822

Query: 59   LF 60
            L+
Sbjct: 1823 LY 1824


>gi|260907271|ref|ZP_05915593.1| ribonuclease III [Brevibacterium linens BL2]
          Length = 234

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 77/170 (45%), Gaps = 7/170 (4%)

Query: 26  ALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83
           ALTH S +       + ERLEFLGD +LGL+ +  L+       EG L+   +++V+   
Sbjct: 25  ALTHRSFAFEAGGIPTNERLEFLGDSVLGLVATESLYYDNPDLAEGSLAKMRSAVVNTRA 84

Query: 84  CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143
            + +AR   +   I +             SI AD VE+LI A ++  G E A  FV +  
Sbjct: 85  LASIARRHGIGPHILLGKGEELTGGRDKDSILADTVEALIGATFVARGREEAFAFVHRLI 144

Query: 144 KQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
                 A+  G    D KT LQE A         Y++   SGPDH   FT
Sbjct: 145 DSMLSDAVNLGA-GMDYKTTLQEAAADLDLGAVSYEIV-SSGPDHAMVFT 192


>gi|301770225|ref|XP_002920522.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer-like
            [Ailuropoda melanoleuca]
          Length = 1931

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 101/260 (38%), Gaps = 51/260 (19%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S  + +  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1667 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1726

Query: 65   SAKEGELSVRFNSLVSAETCSQVAR---------------------------------EL 91
                G L+   ++LV+    + +A                                  +L
Sbjct: 1727 QHSPGVLTDLRSALVNNTIFASLAVXXXXXXXXXXDYHKYFKAVSPELFHVIDDFVQFQL 1786

Query: 92   DLASFIRVSSDLRKD-------VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
            +      + S+LR+            +     D+ ESL  A+Y+D G+ +   +   Y  
Sbjct: 1787 EKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPM 1846

Query: 145  QRALK---SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201
             R L    S    R    EL E        +P  +        +D +  V VE+ G    
Sbjct: 1847 MRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKF 1899

Query: 202  QGMDCSKRAAEQVAAAEVLK 221
            +G+  S R A+  AA   L+
Sbjct: 1900 KGVGRSYRIAKSAAARRALR 1919



 Score = 40.4 bits (93), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 18   ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
             N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   + 
Sbjct: 1293 PNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1350

Query: 78   LVSAETCSQVARELDLASFIRVS 100
             VS     ++ ++  L S + VS
Sbjct: 1351 KVSNCNLYRLGKKKGLPSRMVVS 1373


>gi|190344934|gb|EDK36728.2| hypothetical protein PGUG_00826 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 525

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 103/226 (45%), Gaps = 20/226 (8%)

Query: 17  FANRSLLEKALTHS----SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            A R  + K+ T+S    ++S       ERLEFLGD IL  +++ ++F  F +A EGELS
Sbjct: 176 LAARVFVHKSTTNSKSYLAMSELINSHNERLEFLGDSILNNVVTLIIFEQFPTASEGELS 235

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
               SL++    ++ +        ++ S+   +D+ +    I AD+ E+ I AL +D   
Sbjct: 236 RIRASLINNAFLTEFSLAYGFDKKLK-SNINEEDLRNGKQKIYADLFEAYIGALIIDRKY 294

Query: 133 EVAGTFVDKYWKQRALKS--GKFRRDAK--TELQEWAHAKF-------GVTPEYKVTFRS 181
           ++      K W ++ +K   G   RD K   E+ + A A+         + P+Y+V    
Sbjct: 295 DITEI---KAWLKKLMKDKLGSIARDMKGIKEVNKDAKAELYSLIGTAALHPQYEVIVE- 350

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           G   + +F +   ++G     G   S + A   AA   L  + + T
Sbjct: 351 GDGSEKQFEIACTMNGEILGVGRAPSHKEAGLRAAMHALTNKPVLT 396


>gi|294655098|ref|XP_457193.2| DEHA2B05302p [Debaryomyces hansenii CBS767]
 gi|199429689|emb|CAG85188.2| DEHA2B05302p [Debaryomyces hansenii]
          Length = 540

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 94/201 (46%), Gaps = 24/201 (11%)

Query: 41  ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-- 98
           ERLEFLGD +L  L++ ++FN F  A EGELS   +SLV+  T ++ +        +R  
Sbjct: 220 ERLEFLGDSVLNNLVTVIIFNKFPEASEGELSKIRSSLVNNVTLAEFSILYGFDKKLRSN 279

Query: 99  VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA------GTFVDKYWKQRALK--- 149
           ++  + KD       I AD+ E+ I AL ++   +         T +D    + A +   
Sbjct: 280 INDQILKDSTQ---KIYADIFEAYIGALAIERKFDYTEIQQWLTTLMDSRLNKHARQISS 336

Query: 150 SGKFRRDAKTELQEW-AHAKFGVTPEYKVTFRSGPDHDP---RFTVVVEISGLAPAQGMD 205
           + +  +DAK+EL      A F   P+Y+V        +P   R T+  ++ G+  A    
Sbjct: 337 TEEINKDAKSELYSLIGTAAFH--PQYEVVKTGDGSSNPFVIRCTMGDDVLGVGTAP--- 391

Query: 206 CSKRAAEQVAAAEVLKREGIW 226
            S + A   AA E LK + + 
Sbjct: 392 -SNKDAGLRAAMEALKNKSLL 411


>gi|195380844|ref|XP_002049171.1| GJ20897 [Drosophila virilis]
 gi|194143968|gb|EDW60364.1| GJ20897 [Drosophila virilis]
          Length = 1722

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTH-SSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  LE+ +GY F +R+ L +ALTH S+ ++     Y+ LEF+GD IL  LIS  +F H
Sbjct: 1433 INHQHLEQNLGYTFRDRAYLLQALTHPSNPTNRLTGCYQELEFIGDAILDFLISAYIFEH 1492

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVA 88
                  G+L+   ++LV+  T + + 
Sbjct: 1493 KTRMTPGQLTDLRSALVNNTTLACIC 1518


>gi|66822085|ref|XP_644397.1| hypothetical protein DDB_G0274077 [Dictyostelium discoideum AX4]
 gi|66823323|ref|XP_645016.1| hypothetical protein DDB_G0273051 [Dictyostelium discoideum AX4]
 gi|50057720|emb|CAC41976.2| putative RNaseIII [Dictyostelium discoideum]
 gi|60472520|gb|EAL70472.1| hypothetical protein DDB_G0274077 [Dictyostelium discoideum AX4]
 gi|60473215|gb|EAL71163.1| hypothetical protein DDB_G0273051 [Dictyostelium discoideum AX4]
          Length = 1203

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 22/140 (15%)

Query: 19   NRSLLEKALTHSSIS-------------HSYQ---ESYERLEFLGDRILGLLISTLLFNH 62
            N  +L + LTH S                SY+   + Y+RLEFLGD +L +  S  LF  
Sbjct: 888  NNQVLREVLTHPSTKVISERKPIEKDQFQSYRPFMKDYQRLEFLGDSVLKITSSLYLFKK 947

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            FD+  EG LS +       E  ++++R +     +R+++          +   AD++E+ 
Sbjct: 948  FDNEGEGLLSKKREFYTKNEYLTELSRRIGFDYILRITT------IGDHSKPHADLIEAF 1001

Query: 123  IAALYLDGGIEVAGTFVDKY 142
            I A+Y++ G + +  ++ K+
Sbjct: 1002 IGAIYIECGFKDSFDWIIKW 1021



 Score = 46.6 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 6/94 (6%)

Query: 41   ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
            ERLEFLGD +L  +++  LF+ +   +EG L+   + LV+ E  S++     L S   + 
Sbjct: 1102 ERLEFLGDAVLDFIVADYLFSKYKEQQEGYLTESKSKLVNNENLSKI-----LKSNKNIF 1156

Query: 101  SDLRKDVCS-FMTSIQADVVESLIAALYLDGGIE 133
            S  ++D    F      D +ES I   YL  G E
Sbjct: 1157 SPSQQDSFKHFSVKRMGDHIESYIGGFYLKFGFE 1190


>gi|309355088|emb|CAP39460.2| CBR-DCR-1 protein [Caenorhabditis briggsae AF16]
          Length = 2030

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 39/173 (22%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
             +++ LE++IGY F +R+ L +A TH+S I++     Y+RLEFLGD +L  +I+  LF  
Sbjct: 1760 FQFAQLEEKIGYRFKDRAYLVQAFTHASYINNRVTGCYQRLEFLGDAVLDYMITRYLFED 1819

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELD---------------LASFIRVSSDLRKDV 107
                  G L+   ++LV+    + +A + +               +  F+++  D   D 
Sbjct: 1820 VRQYSPGVLTDLRSALVNNTIFASLAVKFEFQKHFIAMCPGLHHMIEKFVKLCGDRSFDT 1879

Query: 108  CSFMTSIQ----------------------ADVVESLIAALYLDGGIEVAGTF 138
             +F T +                        DV ES+  A+YLD G  +  T+
Sbjct: 1880 -NFNTEMYMVTTEEEIDEGHEEDVEVPKALGDVFESVAGAIYLDSGRNLDTTW 1931


>gi|241896736|emb|CAZ65730.1| dicer-2 protein [Mucor circinelloides f. lusitanicus]
          Length = 1608

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 23/142 (16%)

Query: 13   IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            +G  F    L+ +ALTH+S+ +S    Y+RLEFLGD IL  ++   LF  +  A  G ++
Sbjct: 1332 VGREFKTPLLIVEALTHASLPNSTSPCYQRLEFLGDAILDFMVIRYLFARYPDADPGIIT 1391

Query: 73   VRFNSLVSAETCSQVARELDL-ASFIRVSSDLRKDVCSFMTSIQ---------------- 115
               +S V+      V  E  L    I  S  L + +  F++ ++                
Sbjct: 1392 DLKDSCVNNHILGIVCIETGLYRHIIHYSGKLIRAIEFFVSEVEETKARGEAVGEYWVDF 1451

Query: 116  ------ADVVESLIAALYLDGG 131
                  +DVVES++ A ++D G
Sbjct: 1452 NIPKVLSDVVESMLGATFVDAG 1473


>gi|80979087|gb|ABB54746.1| Dicer-2 [Drosophila melanogaster]
          Length = 1715

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 1/95 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  LEK +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1424 INHYYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1483

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
                  G L+   ++LV+  T + +     L  FI
Sbjct: 1484 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFI 1518


>gi|16215719|dbj|BAB69959.1| double-strand-specific ribonuclease [Drosophila melanogaster]
          Length = 1722

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 1/95 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  LEK +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1431 INHYYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1490

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
                  G L+   ++LV+  T + +     L  FI
Sbjct: 1491 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFI 1525


>gi|22026807|ref|NP_523778.2| Dicer-2 [Drosophila melanogaster]
 gi|21627058|gb|AAF57830.2| Dicer-2 [Drosophila melanogaster]
          Length = 1722

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 1/95 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  LEK +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1431 INHYYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1490

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
                  G L+   ++LV+  T + +     L  FI
Sbjct: 1491 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFI 1525


>gi|268576156|ref|XP_002643058.1| C. briggsae CBR-DCR-1 protein [Caenorhabditis briggsae]
          Length = 1863

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 39/173 (22%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
             +++ LE++IGY F +R+ L +A TH+S I++     Y+RLEFLGD +L  +I+  LF  
Sbjct: 1595 FQFAQLEEKIGYRFKDRAYLVQAFTHASYINNRVTGCYQRLEFLGDAVLDYMITRYLFED 1654

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELD---------------LASFIRVSSDLRKDV 107
                  G L+   ++LV+    + +A + +               +  F+++  D   D 
Sbjct: 1655 VRQYSPGVLTDLRSALVNNTIFASLAVKFEFQKHFIAMCPGLHHMIEKFVKLCGDRSFDT 1714

Query: 108  CSFMTSIQ----------------------ADVVESLIAALYLDGGIEVAGTF 138
             +F T +                        DV ES+  A+YLD G  +  T+
Sbjct: 1715 -NFNTEMYMVTTEEEIDEGHEEDVEVPKALGDVFESVAGAIYLDSGRNLDTTW 1766


>gi|123974683|ref|XP_001313928.1| RNase3 domain containing protein [Trichomonas vaginalis G3]
 gi|121895887|gb|EAY01056.1| RNase3 domain containing protein [Trichomonas vaginalis G3]
          Length = 810

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 11/143 (7%)

Query: 11  KRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNH-FDSA 66
           ++  Y F N  ++ + L   S    S  +  +YERLE+LGD +L LL    +FN  ++ A
Sbjct: 379 EKFNYTFKNWHIVWQFLIDPSYYFRSSQFIHNYERLEYLGDTVLDLLFGISVFNGCYNYA 438

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG +S    + V   T S+++  LDL S +  S+    D+        AD+ E+L  A+
Sbjct: 439 NEGLMSELKIAFVKNRTFSKISEILDLKSLLCTSTPTNYDLGK---KGSADLFEALFGAI 495

Query: 127 YLDGG----IEVAGTFVDKYWKQ 145
            LD      IE+    +++Y ++
Sbjct: 496 LLDSNISKCIEIFKKIIEEYQEE 518



 Score = 42.4 bits (98), Expect = 0.052,   Method: Composition-based stats.
 Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 13/168 (7%)

Query: 18  ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
           +N +    ALTHSS+    + +YER+EF+GD I+   +       F +A E  +S+  + 
Sbjct: 573 SNVTQFTVALTHSSVG---KYNYERIEFIGDLIVKYSLIVSQMEAFPNATESGMSIASSF 629

Query: 78  LVSAETCSQVARE---LDLASFIR---VSSDLRK-DVCSFMT-SIQADVVESLIAALYLD 129
           L S +   + A +   +DL S +R    S D  K D+    T     DV E++ AA+   
Sbjct: 630 LKSNDFLGKRAYKIGLIDLLSIVRKENSSEDAAKGDIDESRTPKYYGDVFEAITAAIAGT 689

Query: 130 GGIEVAGTFVDK--YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
            GI  A  FV K    K+  + S       K +L  +   +F + P +
Sbjct: 690 FGIITAMRFVIKNSIGKEWPIDSNHPNLPIKVQLLYFLQNEFKIIPNF 737


>gi|307195788|gb|EFN77602.1| Endoribonuclease Dcr-1 [Harpegnathos saltator]
          Length = 1807

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 100/254 (39%), Gaps = 45/254 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y  LEK IGY F + S L +A TH+S   +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1550 YEELEKSIGYKFRDSSYLLQAFTHASYQPNRLTDCYQRLEFLGDAVLDYLITRHLYEDSR 1609

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ--------- 115
                G L+   ++LV+    + +A       + R  S     V +    IQ         
Sbjct: 1610 QHSPGALTDLRSALVNNTIFASLAVRCGFHKYFRHLSPGLSVVINRFVRIQEENGHSISE 1669

Query: 116  ----------------------ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153
                                   DV ESL  A+YLD G+ +   +   Y   ++      
Sbjct: 1670 EYYLIGKEECEEAEDVEVPKALGDVFESLAGAIYLDSGMSLDAVWSVYYTIMKSEIEQFS 1729

Query: 154  RRDAKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
                K+ ++E        AKFG  PE     R       R  V V++ G    +G+  + 
Sbjct: 1730 TNVPKSPIRELLELEPETAKFG-KPEKLADGR-------RVRVTVDVFGKGSFKGIGRNY 1781

Query: 209  RAAEQVAAAEVLKR 222
            R A+  AA   LK+
Sbjct: 1782 RIAKCTAAKCALKK 1795



 Score = 37.0 bits (84), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 14   GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            G+   + SL+ +ALT S+ +     + ERLE +GD  L   I+T L+  +D+  EG+LS
Sbjct: 1266 GHPGPSPSLILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYCTYDNIHEGKLS 1322


>gi|40215441|gb|AAR82738.1| SD11113p [Drosophila melanogaster]
          Length = 1640

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 1/95 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  LEK +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1410 INHYYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1469

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
                  G L+   ++LV+  T + +     L  FI
Sbjct: 1470 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFI 1504


>gi|302506394|ref|XP_003015154.1| nucleolar RNAse III, putative [Arthroderma benhamiae CBS 112371]
 gi|291178725|gb|EFE34514.1| nucleolar RNAse III, putative [Arthroderma benhamiae CBS 112371]
          Length = 399

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 69/138 (50%), Gaps = 11/138 (7%)

Query: 16  AFANRSLLEKALTHSSI-------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
              + SL     TH+ I       + + +++Y+RLE LGD  + L+ + L++ +F +   
Sbjct: 132 PIGDESLKTAVFTHTGIMERGPVSTQTSEKTYDRLEVLGDAYIELISTRLIWENFPTLPA 191

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+++    ++V  ET ++ A        ++ SSD+ K V    T +  DV E+ +AA  +
Sbjct: 192 GKIAQARETMVKNETLAEYAIAYGFDRLLKTSSDI-KSVSKRWTKVMGDVFEAYVAAAII 250

Query: 129 ---DGGIEVAGTFVDKYW 143
               GG++   +++ + W
Sbjct: 251 ADPKGGLQAVESWLTQLW 268


>gi|80979095|gb|ABB54750.1| Dicer-2 [Drosophila melanogaster]
          Length = 1715

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            LEK +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +     
Sbjct: 1429 LEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFENNTKMN 1488

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFI 97
             G L+   ++LV+  T + +     L  FI
Sbjct: 1489 PGALTDLRSALVNNTTLACICVRHRLHFFI 1518


>gi|260831340|ref|XP_002610617.1| hypothetical protein BRAFLDRAFT_202604 [Branchiostoma floridae]
 gi|229295984|gb|EEN66627.1| hypothetical protein BRAFLDRAFT_202604 [Branchiostoma floridae]
          Length = 1760

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 101/243 (41%), Gaps = 43/243 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y   E+ + Y+F +++ + +A TH S  + +  + Y+RLEFLGD +L  LI+  LF    
Sbjct: 1509 YQQFEETVQYSFNDKAYMLQAFTHPSYHYNTITDCYQRLEFLGDAVLDYLITNHLFKDPQ 1568

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111
                G L+   ++LV+    + +A + D   +++ VS +L   + +F+            
Sbjct: 1569 QHSPGALTDLRSALVNNTIFASLAVKYDYHKYLKFVSPELFNIISNFVQFQQEQGEEQGM 1628

Query: 112  ---TSIQ----------------ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149
               T I                  DV ES+  A+YLD G+ +   +   Y   + L    
Sbjct: 1629 DSQTYINDEGEEESEDIEVPKALGDVFESVAGAIYLDSGMSLETVWRVYYRMMKPLIDKF 1688

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S K  R    EL E        +P  +        +D +  V V + G    +G+  + R
Sbjct: 1689 SAKVPRSPVRELLEMEPETAKFSPSERT-------YDGKVRVTVTVIGKGQFKGVGRNYR 1741

Query: 210  AAE 212
             A+
Sbjct: 1742 IAK 1744


>gi|195335297|ref|XP_002034311.1| GM19969 [Drosophila sechellia]
 gi|194126281|gb|EDW48324.1| GM19969 [Drosophila sechellia]
          Length = 1731

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 1/95 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +S LE  +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1443 INHSHLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1502

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
                  G L+   ++LV+  T + +     L  FI
Sbjct: 1503 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFI 1537


>gi|241858001|ref|XP_002416132.1| ribonuclease III, putative [Ixodes scapularis]
 gi|215510346|gb|EEC19799.1| ribonuclease III, putative [Ixodes scapularis]
          Length = 778

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 2/90 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66
            E+  G  F +  LL KA TH SI  +     S +RLEFLGD +L L+ S  L+ +F   
Sbjct: 577 FEELTGIEFTHIRLLAKAFTHRSIGFNNLTLGSNQRLEFLGDTVLQLVASEYLYKYFPEH 636

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASF 96
            EG LS+  +SLV+  T + V  +L +  F
Sbjct: 637 HEGHLSLLRSSLVNNRTQAVVCDDLGMVEF 666



 Score = 42.0 bits (97), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 56/120 (46%), Gaps = 18/120 (15%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
           T SSISH+     ERLEFLGD ++  L S  LF  F   +EG L+    ++V  +  + +
Sbjct: 414 TASSISHN-----ERLEFLGDAVVEFLSSIHLFFMFPDLEEGGLATYRAAIVQNQHLAVL 468

Query: 88  AR------------ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
           A+            EL ++  I  S   R      M    + +  SL  AL+LD GI VA
Sbjct: 469 AKVILHSKVFTHVEELPISPHISFSLPARHAFAIGMLEETSWLFVSL-GALFLDSGIRVA 527


>gi|307108113|gb|EFN56354.1| hypothetical protein CHLNCDRAFT_144841 [Chlorella variabilis]
          Length = 229

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 69/130 (53%), Gaps = 3/130 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           R   L++R+GY F+N  LL  AL HSS + +   S   + ++GD  + L+++  +     
Sbjct: 64  RIHELQERLGYRFSNLYLLRLALIHSSAAPTTHNSI--MAWIGDAAMYLVVAEEVAAALG 121

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS-IQADVVESLI 123
            A  G+LS    +L+    C + A  L L+ ++ +   +R       +S + A++ E+++
Sbjct: 122 YAPIGQLSEVRKTLIGRAMCEKYAAHLGLSEYLVLGKSVRIQNAGVASSNMLAELFEAVM 181

Query: 124 AALYLDGGIE 133
            A+YLDG ++
Sbjct: 182 GAVYLDGDLD 191


>gi|320590575|gb|EFX03018.1| rnase3 domain containing protein [Grosmannia clavigera kw1407]
          Length = 1246

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 91/222 (40%), Gaps = 46/222 (20%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDS 65
            ++ K +GY F    LL  A TH S    Y+   SY+RLEFLGD +L + I   LF+ F +
Sbjct: 945  SIAKDLGYQFRFPRLLRSAFTHPSYPRIYENLPSYQRLEFLGDALLDMAIVDYLFHKFSN 1004

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSFMTSIQ--------- 115
                 L+    ++VS +  + ++  L     I   S ++RK +  ++T ++         
Sbjct: 1005 KDPQWLTEHKMAMVSNQFLAFLSVSLGFHRHILSFSGEMRKQILEYVTKVEEERVRAESE 1064

Query: 116  --------------------------ADVVESLIAALYLDGGIEVAGTF-------VDKY 142
                                      ADV+E+ + AL++D   +  GT        V  Y
Sbjct: 1065 AVEAGRPASEFARDYWVHVTHPPKALADVLEAYVGALFVDSEYDYHGTVLKFFNTHVQPY 1124

Query: 143  WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
            +K  +L      +   T   +    +FG   +++V  +  PD
Sbjct: 1125 FKDMSLYDTFANKHPVTFAVKMLSQRFGCR-DWRVIVQEIPD 1165


>gi|195584278|ref|XP_002081941.1| Dcr-2 [Drosophila simulans]
 gi|194193950|gb|EDX07526.1| Dcr-2 [Drosophila simulans]
          Length = 1666

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 1/95 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +S LE  +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1378 INHSHLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1437

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
                  G L+   ++LV+  T + +     L  FI
Sbjct: 1438 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFI 1472


>gi|172355315|ref|NP_001116485.1| endoribonuclease Dicer-1 [Apis mellifera]
 gi|170181362|gb|ACB11577.1| dicer-1 CG4792-PA-like protein [Apis mellifera]
          Length = 1946

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 67/255 (26%), Positives = 102/255 (40%), Gaps = 47/255 (18%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y  LEK IGY F + S L +A TH+S   +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1695 YEELEKNIGYKFHDISYLLQAFTHASYQPNRLTDCYQRLEFLGDAVLDYLITRHLYEDTR 1754

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ--------- 115
                G L+   ++LV+    + +A       + R  S     V +    IQ         
Sbjct: 1755 QHSPGALTDLRSALVNNTIFASLAVRCGFHKYFRHLSPGLSIVINRFVRIQEENGHSIGE 1814

Query: 116  ----------------------ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153
                                   DV ESL  A+YL  G+ +   +   Y+     +  +F
Sbjct: 1815 EYYLIGEEECEEAEDVEVPKALGDVFESLAGAIYLGSGMSLDAVW-SVYYAIMKNEIEQF 1873

Query: 154  RRDA-KTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +  K+ ++E        AKFG  PE     R       R  V V++ G    +G+  +
Sbjct: 1874 STNVPKSPIRELLELEPETAKFG-KPEKLADGR-------RVRVTVDVFGKGSFKGIGRN 1925

Query: 208  KRAAEQVAAAEVLKR 222
             R A+  AA   LK+
Sbjct: 1926 YRIAKCTAAKCALKK 1940


>gi|325685925|gb|EGD27990.1| ribonuclease III [Lactobacillus delbrueckii subsp. lactis DSM
           20072]
          Length = 154

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 70/150 (46%), Gaps = 11/150 (7%)

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           ++V  E  S+VA +      I +     K       ++  DV E+   AL+LD GIE   
Sbjct: 5   NIVRTEGFSKVALDCGFKEEINLGVGEEKAGGRKRKALLEDVFEAFNGALFLDQGIEA-- 62

Query: 137 TFVDKYWKQRA---LKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
             V+K+ +Q     + +G F   RD KT+LQE       VT EY+V   S     P F V
Sbjct: 63  --VEKFLRQTVYPLIAAGYFTPSRDFKTDLQELLQQNGSVTIEYRVLNES--QQPPHFEV 118

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V + G   A G   +K+ AEQ AA+  L+
Sbjct: 119 EVLVDGKKLASGEGRNKKKAEQDAASHALE 148


>gi|80979105|gb|ABB54755.1| Dicer-2 [Drosophila simulans]
 gi|80979109|gb|ABB54757.1| Dicer-2 [Drosophila simulans]
          Length = 1714

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 1/113 (0%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +S LE  +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1426 INHSHLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1485

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
                  G L+   ++LV+  T + +     L  FI   ++   +  S   + Q
Sbjct: 1486 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENEKLSETISKFVNFQ 1538


>gi|80979107|gb|ABB54756.1| Dicer-2 [Drosophila simulans]
          Length = 1567

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 1/113 (0%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +S LE  +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1426 INHSHLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1485

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
                  G L+   ++LV+  T + +     L  FI   ++   +  S   + Q
Sbjct: 1486 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENEKLSETISKFVNFQ 1538


>gi|80979101|gb|ABB54753.1| Dicer-2 [Drosophila simulans]
          Length = 1714

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 1/95 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +S LE  +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1426 INHSHLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1485

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
                  G L+   ++LV+  T + +     L  FI
Sbjct: 1486 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFI 1520


>gi|80979115|gb|ABB54760.1| Dicer-2 [Drosophila simulans]
          Length = 1714

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 1/95 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +S LE  +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1426 INHSHLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1485

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
                  G L+   ++LV+  T + +     L  FI
Sbjct: 1486 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFI 1520


>gi|80979111|gb|ABB54758.1| Dicer-2 [Drosophila simulans]
          Length = 1564

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 1/113 (0%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +S LE  +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1426 INHSHLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1485

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
                  G L+   ++LV+  T + +     L  FI   ++   +  S   + Q
Sbjct: 1486 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENEKLSETISKFVNFQ 1538


>gi|80979113|gb|ABB54759.1| Dicer-2 [Drosophila simulans]
          Length = 1565

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 1/113 (0%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +S LE  +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1426 INHSHLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1485

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
                  G L+   ++LV+  T + +     L  FI   ++   +  S   + Q
Sbjct: 1486 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENEKLSETISKFVNFQ 1538


>gi|194755862|ref|XP_001960198.1| GF13246 [Drosophila ananassae]
 gi|190621496|gb|EDV37020.1| GF13246 [Drosophila ananassae]
          Length = 1727

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 1/95 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + ++ LE+ +GY F +R  L +ALTH S  ++     Y++LEF+GD IL  LIS  +F +
Sbjct: 1441 INHANLEQNLGYTFKDRGYLLQALTHPSYPTNRITGCYQQLEFIGDAILDFLISGYIFEN 1500

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
                  G+L+   ++LV+  T + +     +  FI
Sbjct: 1501 NTKMTPGQLTDLRSALVNNTTLACICVRHKIHLFI 1535


>gi|80979103|gb|ABB54754.1| Dicer-2 [Drosophila simulans]
          Length = 1537

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 1/95 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +S LE  +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1426 INHSHLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1485

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
                  G L+   ++LV+  T + +     L  FI
Sbjct: 1486 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFI 1520


>gi|322704127|gb|EFY95726.1| abhydrolase domain-containing protein [Metarhizium anisopliae ARSEF
           23]
          Length = 340

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 68/144 (47%), Gaps = 13/144 (9%)

Query: 29  HSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVA 88
           H  +S   +  YERLE+LGD  L L+ S+L++  F S   G  S     L+  +T +Q  
Sbjct: 73  HPGLSDPLR-GYERLEWLGDAYLELIASSLIYQTFTSTPVGRCSQLREILIRNKTLAQYF 131

Query: 89  RELDLASFIRVSSDLRKDVCSFMTS--------IQADVVESLIAALYL---DGGIEVAGT 137
           RE  L S  ++  DL+KD+     S         QAD+ E+ +AA  +   + G+    +
Sbjct: 132 REYGLESKAQLPGDLKKDISRGRGSSSDKDIIKTQADMFEAYVAAAIISDPENGMANTAS 191

Query: 138 FVDKYWKQRALKSGKFRRDAKTEL 161
           ++   W  R +K      D K +L
Sbjct: 192 WLKSLW-ARTIKDQIVANDRKRKL 214


>gi|242039323|ref|XP_002467056.1| hypothetical protein SORBIDRAFT_01g018890 [Sorghum bicolor]
 gi|241920910|gb|EER94054.1| hypothetical protein SORBIDRAFT_01g018890 [Sorghum bicolor]
          Length = 1586

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 28/162 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +  LE ++ Y F+ + LL +A++H S+        Y+RLEFLGD +L LLI+  L+    
Sbjct: 1179 FEELEAKLKYNFSVKGLLLEAVSHPSLQELGVDYCYQRLEFLGDSVLDLLITQHLYATHT 1238

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-LRKDVCSFMTS---------- 113
                GEL+   ++LVS E  +Q     ++ S ++  S  L + V  ++ S          
Sbjct: 1239 DVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSGILLEQVTEYVRSSLEYHGKENE 1298

Query: 114  -----------IQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
                       +  D++ES+  A+++D         VD  WK
Sbjct: 1299 FVQQATFKAPKVLGDIMESITGAIFIDVNFN-----VDLVWK 1335


>gi|317035030|ref|XP_001400925.2| ATP-dependent helicase dcl2 [Aspergillus niger CBS 513.88]
          Length = 1407

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            L   IGY F N+SLL ++LTH S    +  +SY+RLEFLGD +L + I + L +H     
Sbjct: 1097 LMAHIGYTFTNKSLLVESLTHPSCQFDTTTQSYQRLEFLGDAVLDMAIMSTLLSHPREIP 1156

Query: 68   EGELSVRFNSLVSA 81
            +G ++   +++V+A
Sbjct: 1157 QGLMTKIKHAVVNA 1170



 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 15/127 (11%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI- 97
            +Y+R EF GD +L   +S  LF    +  EG LS   + +V     ++ A +  L +FI 
Sbjct: 948  NYQRYEFFGDSVLKFTVSCQLFFQHPNWHEGYLSEGRDEIVQNSRLARAALDAGLDAFIM 1007

Query: 98   -------RVSSDLRKDVCSFM-------TSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143
                   + S+ L  +  S         T + ADVVE+LI A Y+DGG   A   + ++ 
Sbjct: 1008 NKMFTPRKWSAPLISEKISLTPKQRTMSTKVLADVVEALIGASYIDGGFAAAHACIHRFL 1067

Query: 144  KQRALKS 150
             +  L++
Sbjct: 1068 PEVNLEN 1074


>gi|158706449|sp|A2R345|DCL21_ASPNC RecName: Full=Dicer-like protein 2-1; Includes: RecName:
            Full=Endoribonuclease dcl2-1; Includes: RecName:
            Full=ATP-dependent helicase dcl2-1
          Length = 1387

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            L   IGY F N+SLL ++LTH S    +  +SY+RLEFLGD +L + I + L +H     
Sbjct: 1097 LMAHIGYTFTNKSLLVESLTHPSCQFDTTTQSYQRLEFLGDAVLDMAIMSTLLSHPREIP 1156

Query: 68   EGELSVRFNSLVSA 81
            +G ++   +++V+A
Sbjct: 1157 QGLMTKIKHAVVNA 1170



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 15/127 (11%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI- 97
            +Y+R EF GD +L   +S  LF    +  EG LS   + +V     ++ A +  L +FI 
Sbjct: 948  NYQRYEFFGDSVLKFTVSCQLFFQHPNWHEGYLSEGRDEIVQNSRLARAALDAGLDAFIM 1007

Query: 98   -------RVSSDLRKDVCSFM-------TSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143
                   + S+ L  +  S         T + ADVVE+LI A Y+DGG   A   + ++ 
Sbjct: 1008 NKMFTPRKWSAPLISEKISLTPKQRTMSTKVLADVVEALIGASYIDGGFAAAHACIHRFL 1067

Query: 144  KQRALKS 150
             +  L++
Sbjct: 1068 PEVNLEN 1074


>gi|327301473|ref|XP_003235429.1| RNase3 domain-containing protein [Trichophyton rubrum CBS 118892]
 gi|326462781|gb|EGD88234.1| RNase3 domain-containing protein [Trichophyton rubrum CBS 118892]
          Length = 399

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 68/138 (49%), Gaps = 11/138 (7%)

Query: 16  AFANRSLLEKALTHSSI-------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
              + SL     TH+ I       + + +++Y+RLE LGD  + L+ + L++ +F +   
Sbjct: 132 PIGDESLKTAVFTHTGIMERGPISTQTSEKTYDRLEVLGDAYIELISTRLIWENFPTLPA 191

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+++    ++V  ET ++ A        ++ SSD+ K V    T +  DV E+ +AA  +
Sbjct: 192 GKIAQARETMVKNETLAEYAVAYGFDQLLKTSSDI-KSVPKRWTKVMGDVFEAYVAAAII 250

Query: 129 ---DGGIEVAGTFVDKYW 143
               GG+    +++ + W
Sbjct: 251 ADPKGGLRAVESWLTQLW 268


>gi|326468912|gb|EGD92921.1| RNase3 domain-containing protein [Trichophyton tonsurans CBS
           112818]
 gi|326480108|gb|EGE04118.1| double-strand-specific pac1 ribonuclease [Trichophyton equinum CBS
           127.97]
          Length = 399

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 68/138 (49%), Gaps = 11/138 (7%)

Query: 16  AFANRSLLEKALTHSSI-------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
              + SL     TH+ I       + + +++Y+RLE LGD  + L+ + L++ +F +   
Sbjct: 132 PIGDESLKTAVFTHTGIMERGPVSTQTSEKTYDRLEVLGDAYIELISTRLIWENFPTLPA 191

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+++    ++V  ET ++ A        ++ SSD+ K V    T +  DV E+ +AA  +
Sbjct: 192 GKIAQARETMVKNETLAEYAIAYGFDQLLKTSSDI-KSVPKRWTKVMGDVFEAYVAAAII 250

Query: 129 ---DGGIEVAGTFVDKYW 143
               GG+    +++ + W
Sbjct: 251 ADPKGGLRAVESWLSQLW 268


>gi|328716581|ref|XP_003245985.1| PREDICTED: endoribonuclease Dcr-1-like isoform 2 [Acyrthosiphon
            pisum]
          Length = 1489

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 2/109 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            + + E+ +GY F +RS L +A+TH+S   +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1357 FESFEQHLGYHFQDRSYLLQAMTHASYYPNRLTDCYQRLEFLGDAVLDYLITRHLYEDKR 1416

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMT 112
                G L+   ++LV+    + +A       + + +S  L   VC F+T
Sbjct: 1417 QHSPGALTDLRSALVNNTIFASLAVRNGFHKYFKHLSPGLSDVVCRFVT 1465


>gi|254572848|ref|XP_002493533.1| RNAase III [Pichia pastoris GS115]
 gi|238033332|emb|CAY71354.1| RNAase III [Pichia pastoris GS115]
 gi|328354643|emb|CCA41040.1| ribonuclease III [Pichia pastoris CBS 7435]
          Length = 524

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 91/194 (46%), Gaps = 28/194 (14%)

Query: 22  LLEKALTHSSISHSYQE--------SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           L  K  TH S     +E        SYERLE+LGD +L L +++++   F ++ EG LSV
Sbjct: 172 LRSKVFTHKSAVTQAEEDSIEAANSSYERLEYLGDAVLELAVTSIVMKEFPASSEGHLSV 231

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDL--RKDVCSFMTSIQADVVESLIAALYLDGG 131
               +VS       ++   L  F    S L  +++       I AD+ E+ I ALY+   
Sbjct: 232 CRQQIVSNSNLENYSK---LYGFPEKLSSLMSKEETDKNNGKIYADIFEAYIGALYVQNN 288

Query: 132 IEVAGTFVDKYWKQRA---LKSGKFRRDAKTELQEWAHAKF-------GVTPEYKVTFRS 181
            ++  T + ++  + A   +++ K +RD K+ L + A  K           P+Y VT  +
Sbjct: 289 NDL--TMIQEWLGKLARPVIEAMKMKRD-KSYLNKSAKEKLYALIGSAKSAPKY-VTLDN 344

Query: 182 GPDHDPRFTVVVEI 195
           GP  D  + V VE+
Sbjct: 345 GPARD-EWLVQVEM 357


>gi|6715634|gb|AAF26461.1|AC007323_2 T25K16.4 [Arabidopsis thaliana]
          Length = 2024

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 60/108 (55%), Gaps = 1/108 (0%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            + ++ +  LE+ + Y F  + LL +A+TH+S   S    Y+RLEF+GD +L  LI+  LF
Sbjct: 1642 LKSIDFVGLERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 1701

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDV 107
              + S   G L+    + V+ E  ++VA +  L  ++R  SS L K V
Sbjct: 1702 FTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQV 1749



 Score = 42.0 bits (97), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 3/97 (3%)

Query: 2    SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
            S L    L+  I Y      +LE ALT +S   ++   YER E LGD  L  ++S  LF 
Sbjct: 1427 SMLLAVQLKNLISYPIPTSKILE-ALTAASCQETF--CYERAELLGDAYLKWVVSRFLFL 1483

Query: 62   HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
             +    EG+L+     +VS     Q A    L S+I+
Sbjct: 1484 KYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 1520


>gi|134081603|emb|CAK46537.1| unnamed protein product [Aspergillus niger]
          Length = 1352

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            L   IGY F N+SLL ++LTH S    +  +SY+RLEFLGD +L + I + L +H     
Sbjct: 1062 LMAHIGYTFTNKSLLVESLTHPSCQFDTTTQSYQRLEFLGDAVLDMAIMSTLLSHPREIP 1121

Query: 68   EGELSVRFNSLVSA 81
            +G ++   +++V+A
Sbjct: 1122 QGLMTKIKHAVVNA 1135



 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 15/127 (11%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI- 97
            +Y+R EF GD +L   +S  LF    +  EG LS   + +V     ++ A +  L +FI 
Sbjct: 913  NYQRYEFFGDSVLKFTVSCQLFFQHPNWHEGYLSEGRDEIVQNSRLARAALDAGLDAFIM 972

Query: 98   -------RVSSDLRKDVCSFM-------TSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143
                   + S+ L  +  S         T + ADVVE+LI A Y+DGG   A   + ++ 
Sbjct: 973  NKMFTPRKWSAPLISEKISLTPKQRTMSTKVLADVVEALIGASYIDGGFAAAHACIHRFL 1032

Query: 144  KQRALKS 150
             +  L++
Sbjct: 1033 PEVNLEN 1039


>gi|46117132|ref|XP_384584.1| hypothetical protein FG04408.1 [Gibberella zeae PH-1]
          Length = 1451

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            LE+ IGY F  +SLL +A+TH S +    Q SYE+LEFLGD +L  ++ T +F       
Sbjct: 1157 LEELIGYTFQKKSLLIEAMTHGSYAADGQQRSYEQLEFLGDAVLDYIVVTRMFQSDPPVP 1216

Query: 68   EGELSVRFNSLVSAE 82
             G L +   ++ +A+
Sbjct: 1217 NGRLHMVKTAMANAD 1231


>gi|218283082|ref|ZP_03489177.1| hypothetical protein EUBIFOR_01763 [Eubacterium biforme DSM 3989]
 gi|218216151|gb|EEC89689.1| hypothetical protein EUBIFOR_01763 [Eubacterium biforme DSM 3989]
          Length = 198

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 64/149 (42%), Gaps = 6/149 (4%)

Query: 60  FNHF---DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
            N+F      +EG+++      V   T   + R+L    F+R+     K       SI A
Sbjct: 29  LNYFLMEPKMREGQMTTLRAQTVCESTLYVLNRQLGWYEFLRLGVGEEKTGGRNRESILA 88

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPE 174
           D  E+ I A+Y+D G  V    + KY K    K  K     D KT LQE   A    T +
Sbjct: 89  DQFEACIGAIYIDQGYHVCDEILTKYMKP-VFKQEKSEAVTDYKTHLQEVIQADSRKTIQ 147

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQG 203
           YK+    GP + P FT+ V +  +   QG
Sbjct: 148 YKLLEEKGPSNAPTFTMGVYLDDILLGQG 176


>gi|294611999|gb|ADF27744.1| ribonuclease III [Ehrlichia ruminantium]
          Length = 71

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 26/59 (44%), Positives = 36/59 (61%)

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
           + +E+LI A+YLDGG++ A  F+  +WK  A       +DAKT LQEWA +K    P Y
Sbjct: 13  NALEALIGAIYLDGGLKAAKDFIFLFWKNSATHMKVPPQDAKTILQEWAQSKGFPAPSY 71


>gi|255933596|ref|XP_002558177.1| Pc12g13700 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211582796|emb|CAP80997.1| Pc12g13700 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1393

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 53/89 (59%), Gaps = 1/89 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  L   IGY F + +LL +ALTH+S  + +  +SY+RLEFLGD +L +++  ++  H
Sbjct: 1104 INHHRLAGLIGYTFNDPALLTEALTHASCEYDTSTQSYQRLEFLGDAVLDMVVMAVIAGH 1163

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVAREL 91
                 +G +++  +S+V+A   +    EL
Sbjct: 1164 PVEMDQGPMTLLKHSVVNANLLAFFCMEL 1192



 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 56/119 (47%), Gaps = 15/119 (12%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
            +Y+R EF GD +L   +S  LF    +  EG LS   + L+     ++ A +L + SF+ 
Sbjct: 960  NYQRYEFFGDSVLKFTVSCQLFFRNGNWHEGYLSESRDKLIQNSRLARAALDLGIDSFVL 1019

Query: 99   VSS-DLRKDVCSFM--------------TSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
             S    RK     +              T + ADVVESLI A Y+DGGI  A   + ++
Sbjct: 1020 TSRFTPRKWTTPLIRNKLEPSTAKRNISTKVLADVVESLIGAAYVDGGIREAQACLHRF 1078


>gi|241061228|ref|XP_002408100.1| dicer-1, putative [Ixodes scapularis]
 gi|215492369|gb|EEC02010.1| dicer-1, putative [Ixodes scapularis]
          Length = 2050

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 1/94 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y   E RIGY F +R+ L +A TH+S  ++   + Y+RLEFLGD +L  LI+  L++   
Sbjct: 1794 YDAFEARIGYRFRDRAYLLQAFTHASYHYNRLTDCYQRLEFLGDAVLDYLITRHLYDDPQ 1853

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
                G L+   ++LV+    + +A + D   + +
Sbjct: 1854 RHSPGTLTDLRSALVNNTFFASLAVKYDFHRYFK 1887


>gi|321461347|gb|EFX72380.1| hypothetical protein DAPPUDRAFT_308316 [Daphnia pulex]
          Length = 1741

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 107/248 (43%), Gaps = 42/248 (16%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            + + E++I Y F +RS L +A +H+S   +   + Y+RLEFLGD +L  LI+  L+ +  
Sbjct: 1490 FESFEEKICYKFNDRSYLLQAFSHASYYLNRLTDCYQRLEFLGDAVLDYLITRYLYENLP 1549

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTS---------- 113
                G L+   ++LV+  T + +A   +   + + +S  L + +  F+ +          
Sbjct: 1550 RHPPGALTDLRSALVNNTTFAVLAERYEFHRYFKHLSPSLNQIMDKFIKAQEENGHSINE 1609

Query: 114  --------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AK 158
                          +  DV ES+  A+YLD  + +   +   Y+     +  +F ++  K
Sbjct: 1610 EYYMIEAEDVEVPKVLGDVFESVAGAIYLDSHMSLNAVW-RVYYNMMKKEIDEFSKNVPK 1668

Query: 159  TELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            + ++E         KFG               D R  V V++ G    +G+  + R A+ 
Sbjct: 1669 SPIRELLELETDRVKFGKAERLP---------DGRLRVTVDVIGKGTFKGIGRNYRIAKC 1719

Query: 214  VAAAEVLK 221
             AA   L+
Sbjct: 1720 TAAKYALR 1727


>gi|289711908|gb|ACC62400.2| ribonuclease III [Penaeus monodon]
          Length = 2473

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 105/258 (40%), Gaps = 56/258 (21%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y   E++IGY F +RS L +A TH+S   +     Y+RLEFLGD +L  LI+  L+    
Sbjct: 2217 YQVFEEKIGYTFRDRSYLLQAFTHASYYKNRLTGCYQRLEFLGDAVLDYLITRHLYEDKR 2276

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ-------- 115
                G L+   ++LV+    + +A + D   + R  S  L + +  F+   +        
Sbjct: 2277 QHSPGALTDLRSALVNNTIFASLAVKYDYHKYFRHFSPGLDRVIRDFVKMQEENGHKINE 2336

Query: 116  ----------------------ADVVESLIAALYLDGGIEVAGTFVDKYW--------KQ 145
                                   DV ES+  A++LD     +G+ +D  W        ++
Sbjct: 2337 EYYFMEEDECEAAEDIEVPKALGDVFESVAGAIFLD-----SGSSLDAVWSVYYTMMCRE 2391

Query: 146  RALKSGKFRRDAKTEL--QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203
                SG   +    EL   E   AKFG  PE  V        D +  V VEI G     G
Sbjct: 2392 IEQFSGVVPKSPIRELLEMEPETAKFG-KPERLV--------DGKVRVSVEIFGKGSFSG 2442

Query: 204  MDCSKRAAEQVAAAEVLK 221
            +  + R A+  AA   L+
Sbjct: 2443 VGRNYRIAKSTAAKRALR 2460


>gi|242018047|ref|XP_002429494.1| dicer-1, putative [Pediculus humanus corporis]
 gi|212514432|gb|EEB16756.1| dicer-1, putative [Pediculus humanus corporis]
          Length = 2179

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 72/265 (27%), Positives = 109/265 (41%), Gaps = 58/265 (21%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ I Y F +RS L +ALTH+S   +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1914 FDIFEESIKYRFRDRSYLLQALTHASYYPNRLTDCYQRLEFLGDAVLDYLITRHLYEDSR 1973

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQA------- 116
                G L+   ++LV+    + +A   D   + R +   L + V  F+   QA       
Sbjct: 1974 HHSPGALTDLRSALVNNTIFASLAVRHDFHKYFRHLCPSLNEVVDRFVRFQQANGHAISE 2033

Query: 117  -----------------------DVVESLIAALYLDGGIEVAGTFVDKYWK--QRALK-- 149
                                   DV ES+  A++LD G+      +D  W+   R +K  
Sbjct: 2034 EFYLIEEEECEEAEDVEVPKALGDVFESVAGAIFLDSGMS-----LDAVWRVYYRIMKNE 2088

Query: 150  ----SGKFRRDAKTELQEW--AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203
                S    +    EL E     A+FG  PE     R       R  V VE+ G     G
Sbjct: 2089 IELFSTNVPKSPIRELFELEPETAQFG-KPEKLADGR-------RVRVSVEVFGKGIFNG 2140

Query: 204  MDCSKRAAEQVAAA---EVLKREGI 225
            +  + R A+  AA    + LKR+G+
Sbjct: 2141 IGRNYRIAKCTAAKCALKQLKRKGL 2165


>gi|154484153|ref|ZP_02026601.1| hypothetical protein EUBVEN_01864 [Eubacterium ventriosum ATCC
           27560]
 gi|149735195|gb|EDM51081.1| hypothetical protein EUBVEN_01864 [Eubacterium ventriosum ATCC
           27560]
          Length = 379

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 71/140 (50%), Gaps = 19/140 (13%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGL-LISTLL--FNHFD 64
           +E++IGY F NR LL +A    S S  +  E+ E LEF+GD+ L L ++ TL   + H  
Sbjct: 16  VERQIGYKFVNRDLLVQAFVRKSYSMENGGENNEVLEFIGDKALDLSVVKTLTDKYGHMI 75

Query: 65  SAK---------------EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS 109
           S +               EG+L+   + LV  E  S    EL LA F+ +S    K+   
Sbjct: 76  SDEPDYEDEDDEFYCEYSEGKLTHLKSLLVRKEYLSARIDELKLAPFLIMSKGDLKNNID 135

Query: 110 FMTSIQADVVESLIAALYLD 129
             TS++ D+ E++I A+ LD
Sbjct: 136 KNTSVKEDLFEAIIGAVTLD 155


>gi|146423032|ref|XP_001487449.1| hypothetical protein PGUG_00826 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 525

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 105/229 (45%), Gaps = 26/229 (11%)

Query: 17  FANRSLLEKALTHS----SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            A R  + K+ T+S    ++S       ERLEFLGD IL  +++ ++F  F +A EGELS
Sbjct: 176 LAARVFVHKSTTNSKSYLAMSELINSHNERLEFLGDSILNNVVTLIIFEQFPTASEGELS 235

Query: 73  VRFNSLVSAETCSQVARELDLASFI--RVSSDLR-KDVCSFMTSIQADVVESLIAALYLD 129
            R  +L+     +    E  LA     ++ S++  +D+ +    I AD+ E+ I AL +D
Sbjct: 236 -RIRALL---INNAFLTEFSLAYGFDKKLKSNINEEDLRNGKQKIYADLFEAYIGALIID 291

Query: 130 GGIEVAGTFVDKYWKQRALKS--GKFRRDAK--TELQEWAHAKF-------GVTPEYKVT 178
              ++      K W ++ +K   G   RD K   E+ + A A+         + P+Y+V 
Sbjct: 292 RKYDITEI---KAWLKKLMKDKLGSIARDMKGIKEVNKDAKAELYSLIGTAALHPQYEVI 348

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
              G   + +F +   ++G     G   S + A   AA   L  + + T
Sbjct: 349 VE-GDGSEKQFEIACTMNGEILGVGRAPSHKEAGLRAAMHALTNKPVLT 396


>gi|281205614|gb|EFA79803.1| hypothetical protein PPL_06622 [Polysphondylium pallidum PN500]
          Length = 1043

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 64/137 (46%), Gaps = 20/137 (14%)

Query: 19  NRSLLEKALTHSSISHS----------------YQESYERLEFLGDRILGLLISTLLFNH 62
           N+ LL +  TH SI+ +                ++   +RLE+ GD IL   I+  L+  
Sbjct: 666 NQRLLREVFTHPSINRNNTVPPRSLKVFKDYQLFKSDNQRLEYFGDSILKFCITYYLYFL 725

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           + +A EG L+ + + + S      +  +  +   +R+     +D        +ADV+E+L
Sbjct: 726 YPNAPEGFLTTKRSEVTSNTYLQNICDQTSIDDILRLGLSNTED----YKKPKADVIEAL 781

Query: 123 IAALYLDGGIEVAGTFV 139
            AA+YL+ GI V   F+
Sbjct: 782 FAAVYLECGINVVYEFI 798



 Score = 53.5 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 10/121 (8%)

Query: 22  LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
           L ++A+  SS     + +Y+RLEFLGD  + L++S  L+++F   +EG LS     LV  
Sbjct: 843 LFQEAMNCSS---DPKMNYQRLEFLGDSYIDLVVSEFLYHNFPREQEGFLSQTRALLVRN 899

Query: 82  ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141
           E  +  A  L      R+   +   V    T    D+ ES    L LDGG++   +F+ K
Sbjct: 900 EKLANTANHL------RIRQSIDPSVVP-TTKRMGDLFESFTGCLLLDGGLQDTKSFLIK 952

Query: 142 Y 142
           +
Sbjct: 953 H 953


>gi|296081735|emb|CBI20740.3| unnamed protein product [Vitis vinifera]
          Length = 1688

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 73/143 (51%), Gaps = 24/143 (16%)

Query: 9    LEKRIGYAFANRSLLEKALTHSS---ISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            LE +IGY F+ + LL +A+TH++   +   Y   Y+RLEFLGD +L +LI+  L+     
Sbjct: 1269 LESKIGYEFSVKGLLLEAITHATEQELGVGY--CYQRLEFLGDSVLDVLITWHLYQSHRD 1326

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL--------------RKDVCSFM 111
               GEL+   ++ V+ E+ +QVA   +L   ++  S L                DV + +
Sbjct: 1327 IDPGELTDLRSASVNNESFAQVAVRRNLQQHLQHCSGLLLGQIKEYAKYLSGSDDVPNPL 1386

Query: 112  TSIQ-----ADVVESLIAALYLD 129
             S +      D+VES+  A+ +D
Sbjct: 1387 QSTKGPKALGDLVESIAGAILID 1409



 Score = 43.5 bits (101), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 8/142 (5%)

Query: 2    SALRYSTLEKRIGYAFANR---SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58
            S +  S L + I +   ++   SL+ +A+T    S S+  S ERLE LGD +L   +S  
Sbjct: 1050 SLMLASQLREEIAFTTGSQISSSLILEAITTLRCSESF--SMERLELLGDSVLKYAVSCH 1107

Query: 59   LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-DLRKDVCSFMTSIQAD 117
            LF  +    EG+LS R + +V   T  ++  +  L  +IR  + D R+ V     SI+  
Sbjct: 1108 LFLKYPKKHEGQLSARRSWVVCNSTLHKLGTDRSLQGYIRDGAFDPRRWVAPGQRSIRPV 1167

Query: 118  VVESLIAAL--YLDGGIEVAGT 137
                 + AL   LDG  +   T
Sbjct: 1168 PCSCGVDALEVPLDGKFQTEDT 1189


>gi|225429722|ref|XP_002280293.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1661

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 73/143 (51%), Gaps = 24/143 (16%)

Query: 9    LEKRIGYAFANRSLLEKALTHSS---ISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            LE +IGY F+ + LL +A+TH++   +   Y   Y+RLEFLGD +L +LI+  L+     
Sbjct: 1242 LESKIGYEFSVKGLLLEAITHATEQELGVGY--CYQRLEFLGDSVLDVLITWHLYQSHRD 1299

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL--------------RKDVCSFM 111
               GEL+   ++ V+ E+ +QVA   +L   ++  S L                DV + +
Sbjct: 1300 IDPGELTDLRSASVNNESFAQVAVRRNLQQHLQHCSGLLLGQIKEYAKYLSGSDDVPNPL 1359

Query: 112  TSIQ-----ADVVESLIAALYLD 129
             S +      D+VES+  A+ +D
Sbjct: 1360 QSTKGPKALGDLVESIAGAILID 1382



 Score = 43.5 bits (101), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 8/142 (5%)

Query: 2    SALRYSTLEKRIGYAFANR---SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58
            S +  S L + I +   ++   SL+ +A+T    S S+  S ERLE LGD +L   +S  
Sbjct: 1023 SLMLASQLREEIAFTTGSQISSSLILEAITTLRCSESF--SMERLELLGDSVLKYAVSCH 1080

Query: 59   LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-DLRKDVCSFMTSIQAD 117
            LF  +    EG+LS R + +V   T  ++  +  L  +IR  + D R+ V     SI+  
Sbjct: 1081 LFLKYPKKHEGQLSARRSWVVCNSTLHKLGTDRSLQGYIRDGAFDPRRWVAPGQRSIRPV 1140

Query: 118  VVESLIAAL--YLDGGIEVAGT 137
                 + AL   LDG  +   T
Sbjct: 1141 PCSCGVDALEVPLDGKFQTEDT 1162


>gi|158706455|sp|Q2H0G2|DCL1_CHAGB RecName: Full=Dicer-like protein 1; Includes: RecName:
            Full=Endoribonuclease DCL1; Includes: RecName:
            Full=ATP-dependent helicase DCL1
          Length = 1607

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 4/116 (3%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66
             E R+GYAF +  LL  A  H +    Y++  SY+RLEFLGD +L +     LF+ F  A
Sbjct: 1275 FEARMGYAFTHPRLLRSAFQHPTYPSVYEKLPSYQRLEFLGDALLDMASVEFLFHRFPGA 1334

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQADVVES 121
                L+    ++VS +    +A  L     I   +S ++K++  ++T I+ D ++S
Sbjct: 1335 DPQWLTEHKMAMVSNQFLGCLAVYLGFHRAISYCASAIQKEITEYVTEIE-DALQS 1389


>gi|218184775|gb|EEC67202.1| hypothetical protein OsI_34085 [Oryza sativa Indica Group]
          Length = 1093

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 30/160 (18%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           LE ++ Y F+ + LL +A+TH S+        Y+RLEFLGD +L LL++  L+       
Sbjct: 730 LEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQRLEFLGDSVLDLLLTRHLYATHTDVD 789

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-----------------------LR 104
            GEL+   ++LVS E  +Q     ++ S ++  S                        L+
Sbjct: 790 PGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSGILLEQITEYVRSNLECQGKESEFLQ 849

Query: 105 KDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
              C  +  +  D++ES+  A++LD         VD  W+
Sbjct: 850 HTTCK-VPKVLGDIMESIAGAVFLDTDFN-----VDMVWE 883


>gi|78099743|gb|ABB20894.1| dicer-like protein [Oryza sativa Indica Group]
          Length = 1116

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 25/150 (16%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           LE ++ Y F+ + LL +A+TH S+        Y+RLEFLGD +L LL++  L+       
Sbjct: 724 LEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQRLEFLGDSVLDLLLTRHLYATHTDVD 783

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-----------------------LR 104
            GEL+   ++LVS E  +Q     ++ S ++  S                        L+
Sbjct: 784 PGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSGILLGQITEYVRSNLECQGKESEFLQ 843

Query: 105 KDVCSFMTSIQADVVESLIAALYLDGGIEV 134
              C  +  +  D++ES+  A++LD    V
Sbjct: 844 HTTCK-VPKVLGDIMESIAGAVFLDTDFNV 872


>gi|26553818|ref|NP_757752.1| ribonuclease III [Mycoplasma penetrans HF-2]
 gi|26453825|dbj|BAC44156.1| ribonuclease III [Mycoplasma penetrans HF-2]
          Length = 244

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 67/120 (55%), Gaps = 9/120 (7%)

Query: 26  ALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83
           ALTH+S ++  +   +Y+RLEFLGD ++  LIS  LF +  S  E +++    +LV++E 
Sbjct: 35  ALTHNSYNNEKKVGYTYQRLEFLGDAVISKLISEFLFKN-KSLDEQKMTEIRKNLVNSEI 93

Query: 84  CSQVARELDL--ASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141
             + + EL L   +FI    +L  D       I+AD+ E+   A+++D G +    +++K
Sbjct: 94  FKKASEELGLLDYAFIGKGINLENDT----KKIKADLFEAFAGAIFIDKGEDEVWKYLEK 149


>gi|161579129|gb|ABX72052.1| Dicer-1 protein [Tribolium castaneum]
          Length = 157

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           Y   E+ IGY F +RS L +ALTH+S S ++  + Y+RLEFLGD +L  LI+  L+    
Sbjct: 63  YDQFERHIGYKFRDRSYLLQALTHASFSPNTLTDCYQRLEFLGDAVLDYLITRHLYEDTR 122

Query: 65  SAKEGELSVRFNSLVSAETCSQVA 88
               G L+   ++LV+    + +A
Sbjct: 123 MHSPGALTDLRSALVNNTIFASLA 146


>gi|169868762|ref|XP_001840952.1| hypothetical protein CC1G_03181 [Coprinopsis cinerea okayama7#130]
 gi|116498110|gb|EAU81005.1| hypothetical protein CC1G_03181 [Coprinopsis cinerea okayama7#130]
          Length = 2074

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 5/89 (5%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            +E  +GY F  + LL +ALTH+S   H    SYER+EF+GD IL ++++ +L+       
Sbjct: 1736 VEHMLGYTFKRKILLIEALTHASYREHINTISYERMEFIGDSILDMVVTDMLYRAPREYS 1795

Query: 68   EGELSVRFNSLVS----AETCSQVARELD 92
             G + +R +++V+    A  C  + REL+
Sbjct: 1796 PGHIHLRRSAVVNGHFLAYICLGMWRELE 1824


>gi|255524265|ref|ZP_05391224.1| Ribonuclease III [Clostridium carboxidivorans P7]
 gi|255512090|gb|EET88371.1| Ribonuclease III [Clostridium carboxidivorans P7]
          Length = 152

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 72/139 (51%), Gaps = 4/139 (2%)

Query: 86  QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK- 144
           ++A++ DL  +IR+S            SI AD VE++IAA+Y+D G E A  FV   +K 
Sbjct: 8   EIAKKWDLGKYIRMSKGEELTGGRERVSILADCVEAIIAAIYIDAGFEKAKGFVLTNFKD 67

Query: 145 --QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
             ++A+K+ K   D KT+LQE       V  +Y +    GP H  +F   V ++      
Sbjct: 68  TIEKAIKN-KIILDYKTKLQEVMQKNGDVDIQYDLMKYEGPPHRRKFYTQVSVNNKVLGN 126

Query: 203 GMDCSKRAAEQVAAAEVLK 221
           G   SK+ +EQ AA + LK
Sbjct: 127 GTGYSKKESEQSAAKKALK 145


>gi|224064945|ref|XP_002301611.1| predicted protein [Populus trichocarpa]
 gi|222843337|gb|EEE80884.1| predicted protein [Populus trichocarpa]
          Length = 303

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 74/153 (48%), Gaps = 23/153 (15%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +E+ + Y F ++ LLE+ALTH+S S     SYERLE++GD +L LL +   +  +     
Sbjct: 57  VEEILHYKFKSKKLLEEALTHASFSDQCF-SYERLEYVGDSVLNLLFTKEQYFLYPDLPP 115

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSD-LRKDVCSFMTSI------------- 114
           G L+   ++ V  E  ++VA +  L  ++R     L + +  F  +I             
Sbjct: 116 GPLTRLRSANVDTEKLARVAIKHKLHRYLRHKMPLLEEQIREFSQAILDYPLHSNGLVET 175

Query: 115 ---QADVVESLIAALYLDGGIEVAGTFVDKYWK 144
               AD+VE+ I A+++D         +D  WK
Sbjct: 176 PKALADIVEAAIGAVFIDSNFS-----IDVVWK 203


>gi|195425457|ref|XP_002061021.1| GK10670 [Drosophila willistoni]
 gi|194157106|gb|EDW72007.1| GK10670 [Drosophila willistoni]
          Length = 1720

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 1/86 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTH-SSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + Y  LE+ +GY F +R+ L +ALTH S+ ++     Y+ LEF+GD IL  LIS  +F  
Sbjct: 1436 INYHYLERNLGYTFKDRAYLLQALTHPSNPTNRLTGCYQELEFIGDAILDFLISAYIFER 1495

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVA 88
                  G+L+   ++LV+  T + + 
Sbjct: 1496 NIRMNPGQLTDLRSALVNNTTLACIC 1521


>gi|193582606|ref|XP_001943370.1| PREDICTED: endoribonuclease Dcr-1-like [Acyrthosiphon pisum]
          Length = 1626

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 64/253 (25%), Positives = 105/253 (41%), Gaps = 55/253 (21%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            + + E+ +GY F +RS L +A+TH+S   +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1374 FESFEQHLGYYFQDRSYLLQAMTHASYYPNCLTDCYQRLEFLGDAVLDYLITRHLYEDKR 1433

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ--------- 115
                G L+   ++LV+    + +A +     +++  S    +V     +IQ         
Sbjct: 1434 RHPPGALTDLRSALVNNTIFASLAVKNGFHKYLKHLSPGLSEVVYRFVAIQEENGHTIDE 1493

Query: 116  ----------------------ADVVESLIAALYLDGGIEVAGTFVDKYWK-QRALKSGK 152
                                   D+ ES+  A+YLD  +      +D  WK    +   +
Sbjct: 1494 EFCFSGEDDFEDAEDVEAPKVLGDIFESVAGAIYLDSNMS-----LDAVWKVYHKIMENE 1548

Query: 153  FRRDAKT-------ELQEWA--HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203
             ++ +K        EL E     AKF   PE  V  R       R  V+VEI G    +G
Sbjct: 1549 IKQFSKNVPISPVRELLELEPNTAKFS-KPEKLVDGR-------RVRVIVEILGKGVFKG 1600

Query: 204  MDCSKRAAEQVAA 216
            +  + R A+  AA
Sbjct: 1601 IGRNYRIAKCTAA 1613


>gi|320580371|gb|EFW94594.1| ribonuclease III, putative [Pichia angusta DL-1]
          Length = 347

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 95/225 (42%), Gaps = 23/225 (10%)

Query: 16  AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
            F +RS +     H S     + + ERLEFLGD I+  L++ +LF  + S  EGELS+  
Sbjct: 38  VFTHRSAVSNT-KHLSKKEILESNNERLEFLGDSIINNLVTQILFERYPSFDEGELSILR 96

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT---SIQADVVESLIAALYLDGGI 132
           + L+S  +  + + +      + V  +  KD  +F      I +DV E+ +  LY+D   
Sbjct: 97  SQLISNSSLGEFSEKYGFPEKLVV--NFAKD-AAFQKGKHKIYSDVFEAYVGGLYVDSNY 153

Query: 133 EVAGTFVDKYWKQRALKS-----------GKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
               T   K W ++ +                  DAK +L  +A       P   +T ++
Sbjct: 154 SNLDTI--KKWLEQLITPRLSKLTERFNLKNLNNDAKAQL--YALIGSAALPPRYITKQT 209

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL-KREGI 225
           G   D  F V   I      +G   + + A   AA + L KRE I
Sbjct: 210 GNGFDVSFIVQCMIGDEIIGEGEGSNLKQAGLRAAEDALSKREVI 254


>gi|229025290|ref|ZP_04181710.1| Ribonuclease 3 [Bacillus cereus AH1272]
 gi|228736043|gb|EEL86618.1| Ribonuclease 3 [Bacillus cereus AH1272]
          Length = 163

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 3/157 (1%)

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EGEL+    ++V   +  + A EL   S + +             ++ ADV E+ I ALY
Sbjct: 3   EGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEAFIGALY 62

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           LD G+E    F+ +    + +  G F    D K++LQE          EY++    GP H
Sbjct: 63  LDQGLETVWGFLKEVVYPK-INEGAFSHVMDYKSQLQELIQRDGSGNVEYQILQEKGPAH 121

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +  F   V ++ +A   G   SK+ AEQ AAAE LK+
Sbjct: 122 NREFVSRVTLNNVALGLGSGKSKKEAEQQAAAEALKK 158


>gi|195424855|gb|ACF96960.1| dicer-1 [Litopenaeus vannamei]
          Length = 2473

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 102/258 (39%), Gaps = 56/258 (21%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y   E++IGY F +RS L +A TH+S   +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 2217 YQVFEEKIGYTFRDRSYLLQASTHASYYKNRLTDCYQRLEFLGDAVLDYLITRHLYEDKR 2276

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ--------- 115
                G L+   ++LV+    + +A + D   + R  S     V      +Q         
Sbjct: 2277 QHSPGALTDLRSALVNNTIFASLAVKYDYHKYFRHFSPGPDRVIRDFVKMQEENGHKINE 2336

Query: 116  ----------------------ADVVESLIAALYLDGGIEVAGTFVDKYW--------KQ 145
                                   DV ES+  A++LD     +G+ +D  W         +
Sbjct: 2337 EYYFMEEDEREAAEDIEVPKALGDVFESVAGAIFLD-----SGSSLDAVWSVYYTMMCPE 2391

Query: 146  RALKSGKFRRDAKTEL--QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203
                SG   +    EL   E   AKFG  PE  V        D +  V VEI G     G
Sbjct: 2392 IERFSGVVPKSPIRELLEMEPETAKFG-KPERLV--------DGKVRVSVEIFGKGSFSG 2442

Query: 204  MDCSKRAAEQVAAAEVLK 221
            +  + R A+  AA   L+
Sbjct: 2443 VGRNYRIAKSTAAKRALR 2460


>gi|315049207|ref|XP_003173978.1| double-strand-specific pac1 ribonuclease [Arthroderma gypseum CBS
           118893]
 gi|311341945|gb|EFR01148.1| double-strand-specific pac1 ribonuclease [Arthroderma gypseum CBS
           118893]
          Length = 397

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 69/138 (50%), Gaps = 11/138 (7%)

Query: 16  AFANRSLLEKALTHSSI-------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
              + +L     TH+ I       + + +++Y+RLE LGD  + L+ + L++ +F +   
Sbjct: 132 PIGDEALKTAVFTHTGIMERGPISTQTSEKTYDRLEVLGDAYIELISTRLIWENFPTLPA 191

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+++    ++V  ET ++ A        ++ SSD+R  V    T +  DV E+ +AA  +
Sbjct: 192 GKIAQARETMVKNETLAEYAIAYGFDQRLKTSSDIR-SVPKRWTKVMGDVFEAYVAAAII 250

Query: 129 ---DGGIEVAGTFVDKYW 143
               GG++   +++ + W
Sbjct: 251 ADPKGGLQAVESWLTQLW 268


>gi|291000766|ref|XP_002682950.1| hypothetical protein NAEGRDRAFT_62031 [Naegleria gruberi]
 gi|284096578|gb|EFC50206.1| hypothetical protein NAEGRDRAFT_62031 [Naegleria gruberi]
          Length = 1386

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/131 (30%), Positives = 68/131 (51%), Gaps = 13/131 (9%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF---DS 65
            L +++ + F N  LL +A  H S +  +  +YERLEFLGD +LGL++++ +F  F    S
Sbjct: 1109 LTEKLNFQFENSGLLLEAFIHPSYNGVF--NYERLEFLGDSVLGLIVTSKIFEKFHKNSS 1166

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-------LRKDVCSFMTSIQADV 118
               G +S     +V  +  + +  E  L ++I  S +         KD   ++  + +DV
Sbjct: 1167 FSLGMMSKLREKIVMNKNFANLCIENQLQNYIIFSGNHIAQQVVHSKDDGEYVKML-SDV 1225

Query: 119  VESLIAALYLD 129
             ESL  AL++D
Sbjct: 1226 FESLAGALFVD 1236



 Score = 46.6 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/137 (30%), Positives = 63/137 (45%), Gaps = 21/137 (15%)

Query: 22   LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
            LLE+ALT  +       +YE+LEF GD IL  ++S  +++ F     G LS   +  VS 
Sbjct: 935  LLEEALT--AKRSQVGANYEKLEFFGDSILKYIVSKHIYHEFPLYSSGSLSQLQHKFVSN 992

Query: 82   ETCSQVARELDLASFIRV----SSDLRKDVCSFMTS-------------IQADVVESLIA 124
               + VAR   L  FI      +S L +++  F ++             + ADVVES+I 
Sbjct: 993  YFLASVARNTRLPLFIITEPLNTSQLVQNIGGFKSNKFADETNIEAEYKVLADVVESIIG 1052

Query: 125  ALY--LDGGIEVAGTFV 139
              Y    G +E    F+
Sbjct: 1053 FCYHIFGGSLEQINRFL 1069


>gi|115437482|ref|NP_001043306.1| Os01g0551100 [Oryza sativa Japonica Group]
 gi|75105855|sp|Q5JK90|RTL1_ORYSJ RecName: Full=Ribonuclease 3-like protein 1; AltName:
           Full=Ribonuclease III-like protein 1; Short=RNase
           III-like protein 1
 gi|57900069|dbj|BAD88131.1| unknown protein [Oryza sativa Japonica Group]
 gi|57900480|dbj|BAD87969.1| unknown protein [Oryza sativa Japonica Group]
 gi|113532837|dbj|BAF05220.1| Os01g0551100 [Oryza sativa Japonica Group]
 gi|215695480|dbj|BAG90671.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 256

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 74/144 (51%), Gaps = 25/144 (17%)

Query: 14  GYAFANRS--LLEKALTHSSISHSYQES-----YERLEFLGDRILGLLISTLLFNHFDSA 66
           GY+F +    LLE ALTHS   H   E+     ++RLEFLGD  LGL  +T+ +      
Sbjct: 30  GYSFRDGGALLLEDALTHSV--HPRDEAGGRARHQRLEFLGDAALGLAFATIFYRDDPGL 87

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD--VCSFMTSIQ--------- 115
            +G+L+V  ++ VS +  ++VA    L   +R  +   +D  V  F  S++         
Sbjct: 88  DQGDLTVLRSANVSTQKLARVAVRRRLYPLLRRYNCAPQDHEVSRFTKSVEGPYSGDPIE 147

Query: 116 -----ADVVESLIAALYLDGGIEV 134
                AD+VE+++ A+YLD  +++
Sbjct: 148 GPRVLADIVEAIVGAVYLDSKLDL 171


>gi|119174400|ref|XP_001239561.1| hypothetical protein CIMG_09182 [Coccidioides immitis RS]
          Length = 1357

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 28/167 (16%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
            + ++K++GY F    LL  A TH S   ++     Y+RLEFLGD +L +     +++   
Sbjct: 1081 AQVKKKLGYDFKYPKLLRSAFTHPSYPSAWARVPCYQRLEFLGDALLDMACVEHIYHKHP 1140

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQA------- 116
                  L+    ++VS +    VA  L L S +   S+ L+  + +++  I+A       
Sbjct: 1141 DKDPQWLTEHKMAMVSNKFLGSVAVRLGLHSHLNHFSTSLQSQITNYVEEIEAAELESGD 1200

Query: 117  ----------------DVVESLIAALYLDGG--IEVAGTFVDKYWKQ 145
                            D+VE+ I A+++D G   EV   F  K+ K+
Sbjct: 1201 PPDAWTLTSDPPKCLPDMVEAYIGAIFIDSGFSFEVVEEFFQKFLKK 1247


>gi|225678617|gb|EEH16901.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
          Length = 314

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 71/143 (49%), Gaps = 13/143 (9%)

Query: 16  AFANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSA 66
              ++SL     TH  ++            +++YERLE LGD  + +  + L+++ F   
Sbjct: 150 PVPDKSLQTAIFTHEGVNDPTNTTTTTASTEKNYERLELLGDAYIEIFATRLVWDTFPRL 209

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           + G LS     LV  ET ++ A    L   ++V++++R+   ++ T ++ D+ E+ +AA+
Sbjct: 210 RAGRLSQIREMLVKNETLAEYATRYGLDRRLQVAAEIRRQAKTW-TKVRGDLFEAYVAAV 268

Query: 127 YLDG---GIEVAGTFVDKYWKQR 146
            L     G+E+   ++ + W  R
Sbjct: 269 ILSHPKRGVEMVEEWLTQLWIPR 291


>gi|213409700|ref|XP_002175620.1| double-strand-specific pac1 ribonuclease [Schizosaccharomyces
           japonicus yFS275]
 gi|212003667|gb|EEB09327.1| double-strand-specific pac1 ribonuclease [Schizosaccharomyces
           japonicus yFS275]
          Length = 377

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 59/130 (45%), Gaps = 2/130 (1%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           +  L+ S LEK++ +   +R+  E    HS+         ERLEFLGD       + L++
Sbjct: 150 LPKLKSSKLEKQV-FMHISRAY-ELYPNHSNSQDLLSVHNERLEFLGDSFFNFYTTRLIY 207

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EGELS   + LV  ET  + AR       + +S    KD       + AD  E
Sbjct: 208 ERFAELNEGELSKLRSKLVGNETAEKYARLYGFDKRLVLSVSAEKDELREAKKVIADTFE 267

Query: 121 SLIAALYLDG 130
           + + AL LDG
Sbjct: 268 AYLGALALDG 277


>gi|30350181|gb|AAP31489.1| putative ribonuclease III [Western X phytoplasma]
          Length = 228

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 89/189 (47%), Gaps = 15/189 (7%)

Query: 9   LEKRIGYAFANRSLLEKALTHSS---ISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           L KR+     N SL   ALTHSS    +++   + ERLEFLGD ++   +++ L+ + + 
Sbjct: 6   LFKRLNIKPKNISLFINALTHSSYANENNAKHNNNERLEFLGDSVINFFMASYLYKN-NK 64

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVS-SDLRKDVCSFMTSIQADVVESLIA 124
             EG ++ +    V  ++    A E+ L  +I +   + ++ V ++  SI  D  E+L  
Sbjct: 65  DDEGVMTKKRAQAVCVDSLLIYAEEIQLKKYIYLGKGEKKRSVHNY--SIVTDAFEALFG 122

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKS-GKFRR--DAKTELQEWAHAKFGVTPEYKVTFRS 181
           A+YLD G + A     K + Q  L    K     D KT+LQE    K      YK+    
Sbjct: 123 AIYLDLGFKQA----QKTFYQVVLPCLNKIINIIDFKTQLQELVQTK-KQNITYKIISEK 177

Query: 182 GPDHDPRFT 190
           G  H+  F 
Sbjct: 178 GLAHEKEFV 186


>gi|125526376|gb|EAY74490.1| hypothetical protein OsI_02382 [Oryza sativa Indica Group]
          Length = 256

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 74/144 (51%), Gaps = 25/144 (17%)

Query: 14  GYAFANRS--LLEKALTHSSISHSYQES-----YERLEFLGDRILGLLISTLLFNHFDSA 66
           GY+F +    LLE ALTHS   H   E+     ++RLEFLGD  LGL  +T+ +      
Sbjct: 30  GYSFRDGGALLLEDALTHSV--HPRDEAGGRARHQRLEFLGDAALGLAFATIFYRDDPGL 87

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD--VCSFMTSIQ--------- 115
            +G+L+V  ++ VS +  ++VA    L   +R  +   +D  V  F  S++         
Sbjct: 88  DQGDLTVLRSANVSTQKLARVAVRRRLYPLLRRYNCAPQDHEVSRFTKSVEGLYSGDPIE 147

Query: 116 -----ADVVESLIAALYLDGGIEV 134
                AD+VE+++ A+YLD  +++
Sbjct: 148 GPRVLADIVEAIVGAVYLDSKLDL 171


>gi|75858914|ref|XP_868797.1| hypothetical protein AN9415.2 [Aspergillus nidulans FGSC A4]
 gi|40747690|gb|EAA66846.1| hypothetical protein AN9415.2 [Aspergillus nidulans FGSC A4]
          Length = 1073

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 66/127 (51%), Gaps = 4/127 (3%)

Query: 23  LEKAL-THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
           LE+A+ TH  ++   + +Y+RLE LGD  + L+ + L++N F     G +S     LV  
Sbjct: 120 LERAVFTHPGVAKDSRTTYDRLEILGDAYIELISTKLIWNKFQHIPSGRISQIRELLVKN 179

Query: 82  ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL--DGGIEVAGTFV 139
           ET ++ A +  +     V ++L      ++ + + D+ E+ +AA+ L    G  VA T++
Sbjct: 180 ETLAEYATQYGIDKKASVPAELYNQPKRWIKT-KGDIFEAYVAAVILSHPDGYSVAETWL 238

Query: 140 DKYWKQR 146
            + W  +
Sbjct: 239 SELWSPK 245


>gi|51512119|gb|AAU05314.1| pac1 ribonuclease [Schizosaccharomyces pombe]
 gi|51512121|gb|AAU05315.1| pac1 ribonuclease [Schizosaccharomyces pombe]
          Length = 363

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 46/101 (45%)

Query: 41  ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
           ERLEFLGD    L  + ++F+ F    EG LS      V  E+  + AR       + +S
Sbjct: 172 ERLEFLGDSFFNLFTTRIIFSKFPQMDEGSLSKLRAKFVGNESADKFARLYGFDKTLVLS 231

Query: 101 SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141
               KD       + AD  E+ + AL LDG  E A  +V +
Sbjct: 232 YSAEKDQLRKSQKVIADTFEAYLGALILDGQEETAFQWVSR 272


>gi|57236094|gb|AAW48724.1| dicer-1 [Aedes aegypti]
          Length = 2192

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 66/259 (25%), Positives = 110/259 (42%), Gaps = 56/259 (21%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            YS  E  +GY  + RS L +A+TH+S   +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1937 YSAFEDSLGYHHS-RSYLLQAMTHASYCPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELD---------------LASFIRVSSD------- 102
                G L+   ++LV+    + +A   D               +  F+R+  D       
Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHDFHKYFRHLSPGLNDVIDRFVRIQQDNGHIISE 2055

Query: 103  ----LRKDVCSFMTSIQ-----ADVVESLIAALYLDGGIEVAGTFVDKYWK-QRALKSGK 152
                + +D C     ++      DV ES+  A++LD  +      +D  WK  R++   +
Sbjct: 2056 EYYLISEDECDEAEDVEVPKALGDVFESVAGAIFLDSNMS-----LDAVWKVYRSMMGPE 2110

Query: 153  FRRDA----KTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203
              + +    K+ ++E        AKFG  PE     R       R  V VE+ G    +G
Sbjct: 2111 IEQFSNSVPKSPIRELLELEPETAKFG-KPEKLADGR-------RVRVTVEVFGKGTFRG 2162

Query: 204  MDCSKRAAEQVAAAEVLKR 222
            +  + R A+  AA   L++
Sbjct: 2163 IGRNYRIAKCTAAKCALRQ 2181


>gi|19112084|ref|NP_595292.1| double-strand-specific ribonuclease Pac1 [Schizosaccharomyces pombe
           972h-]
 gi|129540|sp|P22192|PAC1_SCHPO RecName: Full=Double-strand-specific pac1 ribonuclease; AltName:
           Full=Protein hcs
 gi|4999|emb|CAA38745.1| Pac1 ribonuclease [Schizosaccharomyces pombe]
 gi|1042212|gb|AAB34897.1| double-strand-specific Pac1 ribonuclease [Schizosaccharomyces
           pombe]
 gi|2959372|emb|CAA17926.1| double-strand-specific ribonuclease Pac1 [Schizosaccharomyces
           pombe]
 gi|68697667|emb|CAJ14141.1| unnamed protein product [Schizosaccharomyces pombe]
          Length = 363

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 46/101 (45%)

Query: 41  ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
           ERLEFLGD    L  + ++F+ F    EG LS      V  E+  + AR       + +S
Sbjct: 172 ERLEFLGDSFFNLFTTRIIFSKFPQMDEGSLSKLRAKFVGNESADKFARLYGFDKTLVLS 231

Query: 101 SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141
               KD       + AD  E+ + AL LDG  E A  +V +
Sbjct: 232 YSAEKDQLRKSQKVIADTFEAYLGALILDGQEETAFQWVSR 272


>gi|240277023|gb|EER40533.1| RNase3 domain-containing protein [Ajellomyces capsulatus H143]
 gi|325094961|gb|EGC48271.1| RNase3 domain-containing protein [Ajellomyces capsulatus H88]
          Length = 380

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 61/110 (55%), Gaps = 4/110 (3%)

Query: 37  QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96
           +++YER+E LGD  + ++ + L+++ F     G LS     LV  ET ++      L   
Sbjct: 159 EKNYERMELLGDAYIEIIATRLVWDTFPRLPAGRLSQIRELLVKNETLAEYTSLYGLDQK 218

Query: 97  IRVSSDLRKDVCSFMTSIQADVVESLIAALYL---DGGIEVAGTFVDKYW 143
           ++V  ++R  V ++ T I+ D+ E+ +AA+ L   D G+++A  ++ + W
Sbjct: 219 LQVPPNIRDQVKTW-TKIKGDLFEAYVAAVILSNRDNGVQLAEDWLTQLW 267


>gi|258567596|ref|XP_002584542.1| predicted protein [Uncinocarpus reesii 1704]
 gi|237905988|gb|EEP80389.1| predicted protein [Uncinocarpus reesii 1704]
          Length = 1055

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 78/167 (46%), Gaps = 28/167 (16%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
            + +++++GY F    LL  A THSS   ++     Y+RLEFLGD +L +     L++ + 
Sbjct: 864  AQIKEKLGYQFKYPKLLRSAFTHSSYPSAWAAVPCYQRLEFLGDSLLDMACVEHLYHRYP 923

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQA------- 116
                  L+    ++VS +    VA +L L   +R  S+ ++  + +++  I+A       
Sbjct: 924  DKDPQWLTEHKMAMVSNKFLGCVAVKLGLHPHLRHFSAPIQSQIATYVEEIEAAELESGD 983

Query: 117  ----------------DVVESLIAALYLDGGI--EVAGTFVDKYWKQ 145
                            D+VE+ I A+++D     EV   F +++ K+
Sbjct: 984  SPDAWTSTSDPPKCLPDMVEAYIGAIFIDSDFRYEVVEDFFERFLKR 1030



 Score = 44.7 bits (104), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 49/115 (42%), Gaps = 21/115 (18%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
           ++YERLEFLGD  L +  S  LF       E +  V+   LV  +   + A  L L  FI
Sbjct: 698 KNYERLEFLGDCFLKMATSISLFTMNPDNDEYDFHVKRMCLVCNQNLFKAALNLKLYEFI 757

Query: 98  RVSSDLRKD-VCSFMTSIQ--------------------ADVVESLIAALYLDGG 131
           R  S  R+      +T +Q                    ADV E+LI A YL GG
Sbjct: 758 RSQSFSRRGWYPEGLTLLQGKGQSKTAPENKHALADKTIADVCEALIGASYLSGG 812


>gi|259481091|tpe|CBF74306.1| TPA: nucleolar RNAse III, putative (AFU_orthologue; AFUA_5G04440)
           [Aspergillus nidulans FGSC A4]
          Length = 355

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 66/127 (51%), Gaps = 4/127 (3%)

Query: 23  LEKAL-THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
           LE+A+ TH  ++   + +Y+RLE LGD  + L+ + L++N F     G +S     LV  
Sbjct: 127 LERAVFTHPGVAKDSRTTYDRLEILGDAYIELISTKLIWNKFQHIPSGRISQIRELLVKN 186

Query: 82  ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL--DGGIEVAGTFV 139
           ET ++ A +  +     V ++L      ++ + + D+ E+ +AA+ L    G  VA T++
Sbjct: 187 ETLAEYATQYGIDKKASVPAELYNQPKRWIKT-KGDIFEAYVAAVILSHPDGYSVAETWL 245

Query: 140 DKYWKQR 146
            + W  +
Sbjct: 246 SELWSPK 252


>gi|281427125|ref|NP_001163918.1| dicer 1, ribonuclease type III [Xenopus laevis]
 gi|261826170|gb|ACX94846.1| truncated double-stranded RNA-specific endoribonuclease type III
            [Xenopus laevis]
          Length = 1795

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 1/97 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S  + +  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1625 FENFEKKINYQFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1684

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS 101
                G L+   ++LV+    + +A + D   + +  S
Sbjct: 1685 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAIS 1721


>gi|158706456|sp|Q1DKI1|DCL1_COCIM RecName: Full=Dicer-like protein 1; Includes: RecName:
            Full=Endoribonuclease DCL1; Includes: RecName:
            Full=ATP-dependent helicase DCL1
          Length = 1464

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 28/167 (16%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
            + ++K++GY F    LL  A TH S   ++     Y+RLEFLGD +L +     +++   
Sbjct: 1188 AQVKKKLGYDFKYPKLLRSAFTHPSYPSAWARVPCYQRLEFLGDALLDMACVEHIYHKHP 1247

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQA------- 116
                  L+    ++VS +    VA  L L S +   S+ L+  + +++  I+A       
Sbjct: 1248 DKDPQWLTEHKMAMVSNKFLGSVAVRLGLHSHLNHFSTSLQSQITNYVEEIEAAELESGD 1307

Query: 117  ----------------DVVESLIAALYLDGG--IEVAGTFVDKYWKQ 145
                            D+VE+ I A+++D G   EV   F  K+ K+
Sbjct: 1308 PPDAWTLTSDPPKCLPDMVEAYIGAIFIDSGFSFEVVEEFFQKFLKK 1354


>gi|251764789|sp|Q7XD96|DCL3B_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 3b; AltName:
            Full=Dicer-like protein 3b; Short=OsDCL3b
          Length = 1637

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 72/160 (45%), Gaps = 30/160 (18%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            LE ++ Y F+ + LL +A+TH S+        Y+RLEFLGD +L LL++  L+       
Sbjct: 1244 LEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQRLEFLGDSVLDLLLTRHLYATHTDVD 1303

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-----------------------LR 104
             GEL+   ++LVS E  +Q     ++ S ++  S                        L+
Sbjct: 1304 PGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSGILLEQITEYVRSNLECQGKESEFLQ 1363

Query: 105  KDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
               C  +  +  D++ES+  A+++D         VD  W+
Sbjct: 1364 HTTCK-VPKVLGDIMESIAGAVFIDTDFN-----VDMVWE 1397


>gi|309800535|ref|ZP_07694686.1| ribonuclease III [Streptococcus infantis SK1302]
 gi|308115846|gb|EFO53371.1| ribonuclease III [Streptococcus infantis SK1302]
          Length = 115

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 3/109 (2%)

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTP 173
            D  E+ + AL LD  I+   TF+ +    + +++G F   +D KT LQE       V  
Sbjct: 2   GDAFEAFLGALLLDKDIKTVKTFIYQVMIPK-VEAGDFEMIKDYKTHLQELLQVNGDVDI 60

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            Y+V    GP HD  F V V + G +   G   SK+ AEQ AA   +++
Sbjct: 61  RYQVISEIGPAHDKMFEVEVLVEGQSLGSGKGRSKKLAEQEAAKNAVEK 109


>gi|331236185|ref|XP_003330752.1| hypothetical protein PGTG_12289 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|309309742|gb|EFP86333.1| hypothetical protein PGTG_12289 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1470

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 70/157 (44%), Gaps = 27/157 (17%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            +E++I Y F  +  L +ALTH S +      YER E+LGD ++ + I    +  FD+A  
Sbjct: 1117 IERKINYVFKEKLFLVQALTHRSANSFLTNCYEREEWLGDAVIDMWIVEHAYKRFDNATA 1176

Query: 69   GELSVRFNSLVSAETCSQVA-RELDLASFIRVSSDLRKDVCS--------------FMTS 113
             ELS+    +    +   +A ++L L  FI   SD     C+              F ++
Sbjct: 1177 DELSLARAKVACNGSLGFLAIKKLGLHEFIMHKSDNFHQACAEAIEAIEPFTKISEFFSN 1236

Query: 114  IQ------------ADVVESLIAALYLDGGIEVAGTF 138
            I              D +E+++ A+++D G+ +   +
Sbjct: 1237 INNLFVVFDPPKILNDALEAIVGAVFVDSGLNLPTAY 1273


>gi|303319323|ref|XP_003069661.1| RNase3 domain containing protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240109347|gb|EER27516.1| RNase3 domain containing protein [Coccidioides posadasii C735 delta
           SOWgp]
          Length = 390

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 53/100 (53%), Gaps = 1/100 (1%)

Query: 29  HSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVA 88
           H+    +   SY+RLE LGD  L ++ + L+++ F +   G +S     LV  ET +Q +
Sbjct: 158 HAQAPSAVHSSYDRLEILGDAYLEVIATRLIWDRFQTLPAGRMSQIRELLVKNETLAQFS 217

Query: 89  RELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
                   ++++SD+R     +M  ++ D+ E+ +AA+ L
Sbjct: 218 ERYGFDRRVKIASDIRSQAKRWM-KVKGDIFEAYVAAVIL 256


>gi|212537171|ref|XP_002148741.1| RNA helicase/RNAse III, putative [Penicillium marneffei ATCC 18224]
 gi|210068483|gb|EEA22574.1| RNA helicase/RNAse III, putative [Penicillium marneffei ATCC 18224]
          Length = 1431

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 70/142 (49%), Gaps = 21/142 (14%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQES-YERLEFLGDRILGLLISTLLFNHFDSA 66
            T+  R+G+     S L   LT  S S +++E+ Y+R EFLGD +L L+ S  L  +    
Sbjct: 951  TVLSRVGF-----SNLAHVLTAISASSAHEENDYQRYEFLGDSLLKLITSIHLVVNNPLW 1005

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-DLRKDVCSFMTSIQ---------- 115
             EG LS   +++VS     + A  L L  FI   S   RK   S+++  +          
Sbjct: 1006 HEGMLSAAKDTIVSNGRLYRTALNLGLDRFILTKSFTGRKWRPSYVSQFETVGEEKRELS 1065

Query: 116  ----ADVVESLIAALYLDGGIE 133
                ADVVESL+ A +LDGG E
Sbjct: 1066 TKTLADVVESLLGAAFLDGGYE 1087



 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   +E+ +GY F   S+L +ALTH S S+    +Y+RLEFLGD +L   +    FNH +
Sbjct: 1127 KLGQMEEMLGYKFNKPSILFEALTHPS-SNDGAPTYQRLEFLGDSLLDHFVVQEFFNHPE 1185

Query: 65   SAKEGELSVRFNSLVSA 81
                 E+ +   ++V+A
Sbjct: 1186 KLSHQEMHLMRTAVVNA 1202


>gi|320040901|gb|EFW22834.1| RNase3 domain-containing protein [Coccidioides posadasii str.
           Silveira]
          Length = 390

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 53/100 (53%), Gaps = 1/100 (1%)

Query: 29  HSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVA 88
           H+    +   SY+RLE LGD  L ++ + L+++ F +   G +S     LV  ET +Q +
Sbjct: 158 HAQAPSAVHSSYDRLEILGDAYLEVIATRLIWDRFQTLPAGRMSQIRELLVKNETLAQFS 217

Query: 89  RELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
                   ++++SD+R     +M  ++ D+ E+ +AA+ L
Sbjct: 218 ERYGFDRRVKIASDIRSQAKRWM-KVKGDIFEAYVAAVIL 256


>gi|169608916|ref|XP_001797877.1| hypothetical protein SNOG_07542 [Phaeosphaeria nodorum SN15]
 gi|160701743|gb|EAT85008.2| hypothetical protein SNOG_07542 [Phaeosphaeria nodorum SN15]
          Length = 1017

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/56 (51%), Positives = 35/56 (62%), Gaps = 1/56 (1%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNH 62
            LE  IGY F  + LL +ALTH+S S  +   SYERLEFLGD +L  +IS  L  H
Sbjct: 714 VLETLIGYTFKKKPLLLEALTHASFSGPHVHCSYERLEFLGDAVLDYIISKRLHAH 769



 Score = 40.8 bits (94), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 66/146 (45%), Gaps = 19/146 (13%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           +TL   +    A+  LL +AL  S+   +  ++Y+RLEFLGD IL  + +  L       
Sbjct: 533 TTLLGPVALDSAHSLLLTRALKSSAADGN--DNYQRLEFLGDCILKFIATVHLMAANPKW 590

Query: 67  KEGELSVRFNSLVS------AETCSQVARELDLASFI------RVSSDLRKDVCSFM--- 111
            E  L+ +   +VS      A   + + R +   SF       R + DL  +    +   
Sbjct: 591 PESHLTAKKGRIVSNGFLARATIAAGLDRFMITKSFTGAKWAPRYAGDLLAETGPAVKEE 650

Query: 112 --TSIQADVVESLIAALYLDGGIEVA 135
             + + AD++ESLI A Y  GG E A
Sbjct: 651 RSSKLIADIIESLIGACYTVGGFEKA 676


>gi|297610684|ref|NP_001064898.2| Os10g0485600 [Oryza sativa Japonica Group]
 gi|18087887|gb|AAL59041.1|AC087182_24 putative RNA helicase [Oryza sativa Japonica Group]
 gi|31432753|gb|AAP54346.1| Type III restriction enzyme, res subunit family protein, expressed
            [Oryza sativa Japonica Group]
 gi|255679506|dbj|BAF26812.2| Os10g0485600 [Oryza sativa Japonica Group]
          Length = 1458

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 72/160 (45%), Gaps = 30/160 (18%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            LE ++ Y F+ + LL +A+TH S+        Y+RLEFLGD +L LL++  L+       
Sbjct: 1107 LEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQRLEFLGDSVLDLLLTRHLYATHTDVD 1166

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-----------------------LR 104
             GEL+   ++LVS E  +Q     ++ S ++  S                        L+
Sbjct: 1167 PGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSGILLEQITEYVRSNLECQGKESEFLQ 1226

Query: 105  KDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
               C  +  +  D++ES+  A+++D         VD  W+
Sbjct: 1227 HTTCK-VPKVLGDIMESIAGAVFIDTDFN-----VDMVWE 1260


>gi|222613035|gb|EEE51167.1| hypothetical protein OsJ_31945 [Oryza sativa Japonica Group]
          Length = 1570

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 72/160 (45%), Gaps = 30/160 (18%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            LE ++ Y F+ + LL +A+TH S+        Y+RLEFLGD +L LL++  L+       
Sbjct: 1176 LEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQRLEFLGDSVLDLLLTRHLYATHTDVD 1235

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-----------------------LR 104
             GEL+   ++LVS E  +Q     ++ S ++  S                        L+
Sbjct: 1236 PGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSGILLEQITEYVRSNLECQGKESEFLQ 1295

Query: 105  KDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
               C  +  +  D++ES+  A+++D         VD  W+
Sbjct: 1296 HTTCK-VPKVLGDIMESIAGAVFIDTDFN-----VDMVWE 1329


>gi|226295027|gb|EEH50447.1| abhydrolase domain-containing protein [Paracoccidioides
           brasiliensis Pb18]
          Length = 723

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 63/113 (55%), Gaps = 4/113 (3%)

Query: 37  QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96
           +++YERLE LGD  + +  + L+++ F   + G LS     LV  ET ++ A    L   
Sbjct: 180 EKNYERLELLGDAYIEIFATRLVWDTFPRLRAGRLSQIREMLVKNETLAEYATRYGLDRR 239

Query: 97  IRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG---GIEVAGTFVDKYWKQR 146
           ++V++++R+   ++ T ++ D+ E+ +AA+ L     G+E+   ++ + W  R
Sbjct: 240 LQVAAEIRRQAKTW-TKVRGDLFEAYVAAVILSHPKRGVEMVEEWLTQLWIPR 291


>gi|302794558|ref|XP_002979043.1| hypothetical protein SELMODRAFT_444049 [Selaginella moellendorffii]
 gi|300153361|gb|EFJ20000.1| hypothetical protein SELMODRAFT_444049 [Selaginella moellendorffii]
          Length = 1686

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            +LE ++ Y F NRSLL +A+TH+S  +     Y+RLEFLGD +L  L+S  LF       
Sbjct: 1494 SLEHKLQYKFQNRSLLVEAITHASQPNCLL-CYQRLEFLGDGVLDFLVSRHLFETHPGLP 1552

Query: 68   EGELS 72
             G L+
Sbjct: 1553 PGTLT 1557



 Score = 40.8 bits (94), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 32/60 (53%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
            SYE LE LGD  L  +++  LF  +D   EG+LS R +         Q+A+   +A +IR
Sbjct: 1324 SYESLELLGDSFLKYVVTQKLFLVYDKKHEGQLSARRSRATCNAALYQLAKSSGIAEYIR 1383


>gi|323307668|gb|EGA60933.1| Rnt1p [Saccharomyces cerevisiae FostersO]
          Length = 253

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 3/92 (3%)

Query: 41  ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
           ERLEFLGD IL  +++ +++N F    EG+LS    +LVS E   Q +   +    ++ +
Sbjct: 95  ERLEFLGDSILNSVMTLIIYNKFPDYSEGQLSTLRMNLVSNEQIKQWSIMYNFHEKLKTN 154

Query: 101 SDLRKDVCSFMT---SIQADVVESLIAALYLD 129
            DL+ +  +F      + ADV E+ I  L  D
Sbjct: 155 FDLKDENSNFQNGKLKLYADVFEAYIGGLMED 186


>gi|307133775|ref|NP_001182502.1| endoribonuclease Dicer isoform 2 [Homo sapiens]
 gi|300517087|gb|ADK25182.1| t-Dicer [Homo sapiens]
          Length = 1829

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 55/100 (55%), Gaps = 2/100 (2%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S  + +  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1666 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1725

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDL 103
                G L+   ++LV+    + +A + D   + + VS +L
Sbjct: 1726 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPEL 1765



 Score = 40.8 bits (94), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 13   IGYAF----ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            IGY+      N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A E
Sbjct: 1283 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1340

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVS 100
            G LS   +  VS     ++ ++  L S + VS
Sbjct: 1341 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1372


>gi|158705946|sp|Q0UL22|DCL2_PHANO RecName: Full=Dicer-like protein 2; Includes: RecName:
            Full=Endoribonuclease DCL2; Includes: RecName:
            Full=ATP-dependent helicase DCL2
          Length = 1399

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/56 (51%), Positives = 35/56 (62%), Gaps = 1/56 (1%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNH 62
             LE  IGY F  + LL +ALTH+S S  +   SYERLEFLGD +L  +IS  L  H
Sbjct: 1096 VLETLIGYTFKKKPLLLEALTHASFSGPHVHCSYERLEFLGDAVLDYIISKRLHAH 1151



 Score = 40.4 bits (93), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 66/146 (45%), Gaps = 19/146 (13%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
            +TL   +    A+  LL +AL  S+   +  ++Y+RLEFLGD IL  + +  L       
Sbjct: 915  TTLLGPVALDSAHSLLLTRALKSSAADGN--DNYQRLEFLGDCILKFIATVHLMAANPKW 972

Query: 67   KEGELSVRFNSLVS------AETCSQVARELDLASFI------RVSSDLRKDVCSFM--- 111
             E  L+ +   +VS      A   + + R +   SF       R + DL  +    +   
Sbjct: 973  PESHLTAKKGRIVSNGFLARATIAAGLDRFMITKSFTGAKWAPRYAGDLLAETGPAVKEE 1032

Query: 112  --TSIQADVVESLIAALYLDGGIEVA 135
              + + AD++ESLI A Y  GG E A
Sbjct: 1033 RSSKLIADIIESLIGACYTVGGFEKA 1058


>gi|154300125|ref|XP_001550479.1| hypothetical protein BC1G_10438 [Botryotinia fuckeliana B05.10]
 gi|150856727|gb|EDN31919.1| hypothetical protein BC1G_10438 [Botryotinia fuckeliana B05.10]
          Length = 1398

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 95/215 (44%), Gaps = 63/215 (29%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            +E+ + Y F  +SLL +A+TH S +   Q S ERLEFLGD IL  +I T +++H      
Sbjct: 1090 VEQILAYTFTKKSLLVEAMTHPSYTSGTQ-SLERLEFLGDSILDNIIVTAMWSHSTPLSH 1148

Query: 69   GELSVRFNSLVSAE----TCSQVA----------------------RELDLASFIRVSS- 101
              + +  ++LV+A+     C +++                      R + L SF+R SS 
Sbjct: 1149 FHMHLLRSALVNADFLAFLCMEMSIDQNVTNLTEGKNHRIHETHSRRRVSLVSFLRHSSV 1208

Query: 102  --------------DLRKDVC-----------SFMTSIQA-----DVVESLIAALYLD-G 130
                          +LR  +            + ++ + A     D++ESL+ A+++D G
Sbjct: 1209 RLSIYQKEALSRHAELRDQILEAIYTGDTFPWALLSRLDARKFFSDMIESLLGAVWIDSG 1268

Query: 131  GIEVAGTFVDKY----WKQRALKSGKFRRDAKTEL 161
             +EV    +++     + +R LK G      K EL
Sbjct: 1269 SMEVCTQLIERMGVLRYMRRILKDGVRIMHPKEEL 1303



 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 63/125 (50%), Gaps = 19/125 (15%)

Query: 17   FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIST-LLFNHFDSAKEGELSVRF 75
             +++SL++ A+TH+S  +S   +Y+RLEFLGD IL L  S  L+  H D   EG LS   
Sbjct: 964  ISDQSLIQTAITHAS--YSLDSNYQRLEFLGDSILKLCTSVQLVAEHLD-WHEGYLSAMK 1020

Query: 76   NSLVSAETCSQVARELDLASFIRVS------------SDL---RKDVCSFMTSIQADVVE 120
            + +VS    S+ A E+ L  +I                DL    +      + I +DVVE
Sbjct: 1021 DRIVSNSRSSRAAAEVGLDEYIMTKKFTGAKWRPMYVDDLVVTEQKTREMSSKILSDVVE 1080

Query: 121  SLIAA 125
            +LI A
Sbjct: 1081 ALIGA 1085


>gi|302819693|ref|XP_002991516.1| hypothetical protein SELMODRAFT_448444 [Selaginella moellendorffii]
 gi|300140718|gb|EFJ07438.1| hypothetical protein SELMODRAFT_448444 [Selaginella moellendorffii]
          Length = 1719

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            +LE ++ Y F NRSLL +A+TH+S  +     Y+RLEFLGD +L  L+S  LF       
Sbjct: 1463 SLEHKLQYKFQNRSLLVEAITHASQPNCLL-CYQRLEFLGDGVLDFLVSRHLFETHPGLP 1521

Query: 68   EGELS 72
             G L+
Sbjct: 1522 PGTLT 1526



 Score = 41.2 bits (95), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 32/60 (53%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
            SYE LE LGD  L  +++  LF  +D   EG+LS R +         Q+A+   +A +IR
Sbjct: 1293 SYESLELLGDSFLKYVVTQKLFLVYDKKHEGQLSARRSRATCNAALHQLAKSSGIAEYIR 1352


>gi|195487840|ref|XP_002092062.1| Dcr-2 [Drosophila yakuba]
 gi|194178163|gb|EDW91774.1| Dcr-2 [Drosophila yakuba]
          Length = 1730

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 1/95 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  LE  +GY F +R  L +ALTH S  ++     Y+ LEF+GD IL  LIS  +F +
Sbjct: 1439 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1498

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
                  G L+   ++LV+  T + +     L  FI
Sbjct: 1499 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFI 1533


>gi|80979119|gb|ABB54762.1| Dicer-2 [Drosophila yakuba]
          Length = 1719

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 1/95 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  LE  +GY F +R  L +ALTH S  ++     Y+ LEF+GD IL  LIS  +F +
Sbjct: 1428 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1487

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
                  G L+   ++LV+  T + +     L  FI
Sbjct: 1488 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFI 1522


>gi|196000070|ref|XP_002109903.1| hypothetical protein TRIADDRAFT_20536 [Trichoplax adhaerens]
 gi|190588027|gb|EDV28069.1| hypothetical protein TRIADDRAFT_20536 [Trichoplax adhaerens]
          Length = 190

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 2/70 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +  E+ IG  F +  LL KA TH S  ++H     Y+RLEFLGD IL  ++++ ++  F 
Sbjct: 121 TDFEESIGVEFKHIRLLAKAFTHPSAGLNHLTIGDYQRLEFLGDAILSYMLASHVYRQFP 180

Query: 65  SAKEGELSVR 74
             +EG LSVR
Sbjct: 181 HYREGHLSVR 190



 Score = 35.8 bits (81), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG+LSV  ++LV+ +   ++ ++L L  F+  S +  K+  +   SI A+ VE+L
Sbjct: 2   FPDLSEGDLSVYRSALVNNKQLGRLGKKLKLDEFLAYSHEALKN-NNLDRSI-ANGVEAL 59

Query: 123 IAALYLDGGIE 133
             A+YL+ G++
Sbjct: 60  FGAMYLENGLD 70


>gi|80979125|gb|ABB54765.1| Dicer-2 [Drosophila yakuba]
          Length = 1719

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 1/95 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  LE  +GY F +R  L +ALTH S  ++     Y+ LEF+GD IL  LIS  +F +
Sbjct: 1428 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1487

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
                  G L+   ++LV+  T + +     L  FI
Sbjct: 1488 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFI 1522


>gi|80979133|gb|ABB54769.1| Dicer-2 [Drosophila teissieri]
          Length = 1719

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 1/95 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  LE  +GY F +R  L +ALTH S  ++     Y+ LEF+GD IL  LIS  +F +
Sbjct: 1428 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1487

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
                  G L+   ++LV+  T + +     L  FI
Sbjct: 1488 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFI 1522


>gi|80979127|gb|ABB54766.1| Dicer-2 [Drosophila yakuba]
          Length = 1719

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 1/95 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  LE  +GY F +R  L +ALTH S  ++     Y+ LEF+GD IL  LIS  +F +
Sbjct: 1428 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1487

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
                  G L+   ++LV+  T + +     L  FI
Sbjct: 1488 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFI 1522


>gi|80979131|gb|ABB54768.1| Dicer-2 [Drosophila santomea]
          Length = 1719

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 1/95 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  LE  +GY F +R  L +ALTH S  ++     Y+ LEF+GD IL  LIS  +F +
Sbjct: 1428 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1487

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
                  G L+   ++LV+  T + +     L  FI
Sbjct: 1488 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFI 1522


>gi|80979123|gb|ABB54764.1| Dicer-2 [Drosophila yakuba]
          Length = 1719

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 1/95 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  LE  +GY F +R  L +ALTH S  ++     Y+ LEF+GD IL  LIS  +F +
Sbjct: 1428 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1487

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
                  G L+   ++LV+  T + +     L  FI
Sbjct: 1488 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFI 1522


>gi|80979121|gb|ABB54763.1| Dicer-2 [Drosophila yakuba]
          Length = 1719

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 1/95 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  LE  +GY F +R  L +ALTH S  ++     Y+ LEF+GD IL  LIS  +F +
Sbjct: 1428 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1487

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
                  G L+   ++LV+  T + +     L  FI
Sbjct: 1488 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFI 1522


>gi|80979129|gb|ABB54767.1| Dicer-2 [Drosophila yakuba]
          Length = 1719

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 1/95 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  LE  +GY F +R  L +ALTH S  ++     Y+ LEF+GD IL  LIS  +F +
Sbjct: 1428 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1487

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
                  G L+   ++LV+  T + +     L  FI
Sbjct: 1488 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFI 1522


>gi|154276932|ref|XP_001539311.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150414384|gb|EDN09749.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 380

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 61/110 (55%), Gaps = 4/110 (3%)

Query: 37  QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96
           +++YER+E LGD  + ++ + L+++ F     G LS     LV  ET ++      L   
Sbjct: 159 EKNYERMELLGDAYIEIIATRLVWDTFPRLPAGRLSQIRELLVKNETLAEYTSLYGLDQK 218

Query: 97  IRVSSDLRKDVCSFMTSIQADVVESLIAALYL---DGGIEVAGTFVDKYW 143
           ++V  ++R  + ++ T I+ D+ E+ +AA+ L   D G+++A  ++ + W
Sbjct: 219 LQVPPNIRDQIKTW-TKIKGDLFEAYVAAVILSNRDNGVQLAEDWLTQLW 267


>gi|126177989|ref|YP_001045954.1| ribonuclease III [Methanoculleus marisnigri JR1]
 gi|125860783|gb|ABN55972.1| RNAse III [Methanoculleus marisnigri JR1]
          Length = 156

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 68/133 (51%), Gaps = 5/133 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLFNH 62
             +E+RIGY F +R+LLE+ALT  + +       +   + L  LGD ++ + +   +   
Sbjct: 12  GVIEERIGYTFKDRALLERALTRLAYTLEAGIPPETHMDALATLGDAVINVAVVEAVVAG 71

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
               K G +S R  +LV+      +A +LDLA ++R               + A+ +E+L
Sbjct: 72  GAHDK-GAISNRKMNLVNMTRLRGLAEDLDLADYVRWGKGEAAQRVWTSGRVLAECLEAL 130

Query: 123 IAALYLDGGIEVA 135
           + A+YLDGG++ A
Sbjct: 131 VGAVYLDGGMDAA 143


>gi|312069719|ref|XP_003137813.1| hypothetical protein LOAG_02227 [Loa loa]
 gi|307767024|gb|EFO26258.1| hypothetical protein LOAG_02227 [Loa loa]
          Length = 1928

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
             ++S LE  IGY F +R+ L +A TH+S   +     Y+RLEFLGD +L  +I+  LF H
Sbjct: 1660 FQFSKLEDFIGYRFNDRAYLLQAFTHASYYKNRITGCYQRLEFLGDAVLDYVITRFLFQH 1719

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVA 88
                  G L+   ++LV+    + +A
Sbjct: 1720 SSHYSPGVLTDLRSALVNNTIFASLA 1745


>gi|295657108|ref|XP_002789127.1| abhydrolase domain-containing protein [Paracoccidioides
           brasiliensis Pb01]
 gi|226284541|gb|EEH40107.1| abhydrolase domain-containing protein [Paracoccidioides
           brasiliensis Pb01]
          Length = 740

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 63/113 (55%), Gaps = 4/113 (3%)

Query: 37  QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96
           +++YERLE LGD  + +  + L+++ F   + G LS     LV  ET ++ A    L   
Sbjct: 175 EKNYERLELLGDAYIEIFATRLVWDTFPRLRAGRLSQIREMLVKNETLAEYATRYGLDRR 234

Query: 97  IRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG---GIEVAGTFVDKYWKQR 146
           ++V++++R+   ++ T ++ D+ E+ +AA+ L     G+E+   ++ + W  R
Sbjct: 235 LQVAAEIRRQAKTW-TKVRGDLFEAYVAAVILSHPKRGVEMVEEWLTQLWIPR 286


>gi|80979117|gb|ABB54761.1| Dicer-2 [Drosophila yakuba]
          Length = 1719

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 1/95 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  LE  +GY F +R  L +ALTH S  ++     Y+ LEF+GD IL  LIS  +F +
Sbjct: 1428 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1487

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
                  G L+   ++LV+  T + +     L  FI
Sbjct: 1488 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFI 1522


>gi|322707759|gb|EFY99337.1| Dicer-like protein 2 [Metarhizium anisopliae ARSEF 23]
          Length = 1442

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 112/274 (40%), Gaps = 63/274 (22%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLI-------STLLF 60
            LE  +GY F  +SLL +A+TH S    YQ  SYE LEF+GD IL  +I         LL 
Sbjct: 1158 LEHLVGYQFNKKSLLIEAMTHQSCMFDYQRRSYEHLEFIGDAILDFIIVRKMYTAEPLLA 1217

Query: 61   NH-FDSAKEGELSVRFNSLVSAE-----TCSQVARELDLA----------SFIRVSSD-- 102
             H   S K   ++  F + +S +     T + V  +L +           +F+R SS+  
Sbjct: 1218 PHQMHSLKTAMVNADFLAFLSLDHQMRRTETAVTSDLQIVDKETTPLALWTFMRHSSEAI 1277

Query: 103  -------------LRKDVC-----------SFMTSIQA-----DVVESLIAALYLD-GGI 132
                         LR ++            + +  +QA     D+ ESL+ A+++D G I
Sbjct: 1278 GIEQATTLKRYEALRGEILATLRQGSHYPWALLAGLQAKKFYSDIFESLLGAVWVDSGSI 1337

Query: 133  EVAGTFVDKYWK----QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
            E+    + K+       R LK     +  K  L + A  +   T  Y V  +  PD D  
Sbjct: 1338 ELCECMLQKFGVLSILDRLLKDRVQVQHPKEVLGKMAVTQ---TVTYNVDVQEAPDGDRA 1394

Query: 189  FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            FT  V +      + +D   +   +  AAE   R
Sbjct: 1395 FTCRVLVGQRVITEVVDGVTKEEVKTKAAEAAIR 1428



 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 54/123 (43%), Gaps = 17/123 (13%)

Query: 30   SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAR 89
            SS S +   +YERLEFLGD IL    +  +        EG LS   + LVS    S+ A 
Sbjct: 996  SSRSAAEPVNYERLEFLGDSILKYCTAIQVSAIHPEWPEGYLSFFKDRLVSNSRLSRAAI 1055

Query: 90   ELDLASFI-----------------RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
            ++ LA FI                    +  +       T   ADVVE+LI A Y++GGI
Sbjct: 1056 DVGLAKFILTKTFTGQKWRPLYLENYTGNPGKVSPRKLSTKTLADVVEALIGASYVNGGI 1115

Query: 133  EVA 135
              A
Sbjct: 1116 TKA 1118


>gi|121717533|ref|XP_001276079.1| RNase3 domain protein [Aspergillus clavatus NRRL 1]
 gi|119404277|gb|EAW14653.1| RNase3 domain protein [Aspergillus clavatus NRRL 1]
          Length = 228

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 64/147 (43%), Gaps = 6/147 (4%)

Query: 27  LTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQ 86
            TH  +      +Y+RLE LGD  + L+ + L++N F     G +S     LV  ET S+
Sbjct: 6   FTHPGVGKDLNSTYDRLEILGDAYIELIATKLIWNEFKDLSSGRISQMRELLVKNETLSE 65

Query: 87  VARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD---GGIEVAGTFVDKYW 143
            A      S   V  D       + T  + D+ ES +AA+ L     G  VA  ++ + W
Sbjct: 66  FAALYGFDSRAAVPHDYLNQPKRW-TKTKGDIFESYVAAVILSRPLDGYSVAERWLTQLW 124

Query: 144 --KQRALKSGKFRRDAKTELQEWAHAK 168
             K R     + R DAK  L +   AK
Sbjct: 125 LPKLRCTALRQPRLDAKEALAKKIMAK 151


>gi|116196272|ref|XP_001223948.1| hypothetical protein CHGG_04734 [Chaetomium globosum CBS 148.51]
 gi|88180647|gb|EAQ88115.1| hypothetical protein CHGG_04734 [Chaetomium globosum CBS 148.51]
          Length = 1476

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 17/132 (12%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66
             E R+GYAF +  LL  A  H +    Y++  SY+RLEFLGD +L +     LF+ F  A
Sbjct: 1201 FEARMGYAFTHPRLLRSAFQHPTYPSVYEKLPSYQRLEFLGDALLDMASVEFLFHRFPGA 1260

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV---CSFMTSIQADVVESLI 123
                   +  +  +    +    +L   SF R       D    CS       DVVE+ +
Sbjct: 1261 DP-----QSKTPCNRHATTPSPGDLPAESFAR-------DFWVRCSRPPKCLPDVVEAYV 1308

Query: 124  AALYLDGGIEVA 135
             A+++D   + A
Sbjct: 1309 GAVFVDSRYDFA 1320


>gi|887620|emb|CAA90210.1| unknown [Saccharomyces cerevisiae]
          Length = 362

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 3/92 (3%)

Query: 41  ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
           ERLEFLGD IL  +++ +++N F    EG+LS    +LVS E   Q +   +    ++ +
Sbjct: 129 ERLEFLGDSILNSVMTLIIYNKFPDYSEGQLSTLRMNLVSNEQIKQWSIMYNFHEKLKTN 188

Query: 101 SDLRKDVCSFMT---SIQADVVESLIAALYLD 129
            DL+ +  +F      + ADV E+ I  L  D
Sbjct: 189 FDLKDENSNFQNGKLKLYADVFEAYIGGLMED 220


>gi|316961980|gb|EFV48479.1| endoribonuclease Dicer [Trichinella spiralis]
          Length = 325

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 39/62 (62%), Gaps = 3/62 (4%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHS---SISHSYQESYERLEFLGDRILGLLISTL 58
           +A   ++ E +IGY F N++ L +ALTHS    +     +SYERLEFLGD IL  LIS  
Sbjct: 59  TAYDLNSFEAKIGYRFTNKAYLIQALTHSLYNEVETPVTDSYERLEFLGDAILDYLISRH 118

Query: 59  LF 60
           L+
Sbjct: 119 LY 120


>gi|326472405|gb|EGD96414.1| dicer [Trichophyton tonsurans CBS 112818]
          Length = 1519

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 72/165 (43%), Gaps = 28/165 (16%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64
            + ++ ++GY F    LL  A  H S    +     Y+RLEFLGD +L ++    LF  + 
Sbjct: 1236 NQIQSKLGYCFKYPKLLRSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMVCVNHLFERYP 1295

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDL-ASFIRVSSDLRKDVCSFMTSIQA------- 116
                  L+    ++VS +    +A  L+L    I +S+ L+  + S+   +QA       
Sbjct: 1296 DKDPQWLTEHKMAMVSNKFLGSLAVNLNLHVHLIHISNTLQGQITSYTEELQAMKIKMEG 1355

Query: 117  ----------------DVVESLIAALYLDGGIEVAGTFVDKYWKQ 145
                            D+VE+ + A+++D         VD+++++
Sbjct: 1356 NLEAWTYTNEPPKCLPDIVEAYLGAIFVDSNFNF--DVVDEFFRK 1398


>gi|321475108|gb|EFX86072.1| hypothetical protein DAPPUDRAFT_309030 [Daphnia pulex]
          Length = 1607

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 110/254 (43%), Gaps = 51/254 (20%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
            + EKR+ Y F N++LL +ALTH+S I +     Y+RLEFLGD +L  L++   +++    
Sbjct: 1350 SFEKRLRYTFKNKALLIEALTHASYIPNRITNCYQRLEFLGDAVLDYLVTRYYYDNPCQY 1409

Query: 67   KEGELSVRFNSLVSAETCSQVA---------RELDLA------SFIRV------------ 99
                L+   +++V+ ET + +A         + L L+       F+R             
Sbjct: 1410 TPAILTDLRSAMVNNETFAVMAVQNRFHLYLKHLSLSLNVILDRFVRSQEENGHLLMHNY 1469

Query: 100  -----SSDLRKDVCSFM--TSIQADVVESLIAALYLDGGIEVAGTFVDKYWK------QR 146
                 +S+  + + S +    +  D+ ES+  A+++D G+      +D  WK        
Sbjct: 1470 FVLEETSEPHQSLASNIDVPKVLGDIFESVAGAIFVDSGMS-----LDAVWKSYLPFLHD 1524

Query: 147  ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206
            AL+  KF            H ++    +++   +S    D R  V +EI G    +G   
Sbjct: 1525 ALE--KFNEKIPISALRVLHERYPNALKFR---KSESLADGRLCVAIEIQGTRVFKGAGG 1579

Query: 207  SKRAAEQVAAAEVL 220
            + + A+  AA   L
Sbjct: 1580 NSKTAKSAAAKYAL 1593


>gi|194880776|ref|XP_001974538.1| GG21041 [Drosophila erecta]
 gi|190657725|gb|EDV54938.1| GG21041 [Drosophila erecta]
          Length = 1729

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 1/95 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  LE  +GY F +R  L +ALTH S  ++     Y+ LEF+GD IL  LIS  +F +
Sbjct: 1439 INHYHLENNLGYTFKDRGYLLQALTHPSYPTNRITGCYQELEFIGDAILDFLISVYIFEN 1498

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
              +   G L+   ++LV+  T + +     L  FI
Sbjct: 1499 NTNMNPGALTDLRSALVNNTTLACICVRHRLHFFI 1533


>gi|225561826|gb|EEH10106.1| dicer-like protein [Ajellomyces capsulatus G186AR]
          Length = 1502

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 28/163 (17%)

Query: 11   KRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
             R+GY F    LL  A TH+S   ++     Y+RLEFLGD +L ++    L++H+     
Sbjct: 1244 NRLGYYFTYPRLLRSAFTHASYPSAWSTVPCYQRLEFLGDSLLDMVCVEHLYHHYPDRDP 1303

Query: 69   GELSVRFNSLVSAETCSQVARELDL-ASFIRVSSDLRKDVCSFMTSIQ------------ 115
              L+    ++VS +    VA +L L    + +S+ L   +  +   I+            
Sbjct: 1304 QWLTEHKMAMVSNKFLGAVAVKLGLHKHLLYISNALFGQITRYAEEIEVAVAESADSPDA 1363

Query: 116  -----------ADVVESLIAALYLDGG--IEVAGTFVDKYWKQ 145
                        D++E+ I A+++D     EV   F  +Y KQ
Sbjct: 1364 WTTTSDPPKCLPDMLEAYIGAIFVDSNFSFEVVEDFFQRYLKQ 1406



 Score = 37.4 bits (85), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 50/131 (38%), Gaps = 28/131 (21%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
            ++YERLEFLGD  L +  S  LF       E +  V+   L+  +     A  L L  F+
Sbjct: 1075 KNYERLEFLGDCFLKMATSISLFAMNPDNDEFDFHVKRMCLICNQNLFNTAVRLKLYEFV 1134

Query: 98   RVS--------------------SDLRKDVCSFMTSIQADVVESLIAALYLDGG------ 131
            R                      S+  ++  +      AD+ E+LI A  L GG      
Sbjct: 1135 RTQGFSRRNWYPEGIKLLQGKAKSESAQNKQALGDKTIADICEALIGASLLSGGKACRFD 1194

Query: 132  --IEVAGTFVD 140
              ++    FVD
Sbjct: 1195 TAVKAVTVFVD 1205


>gi|326481629|gb|EGE05639.1| hypothetical protein TEQG_04648 [Trichophyton equinum CBS 127.97]
          Length = 1519

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 72/165 (43%), Gaps = 28/165 (16%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64
            + ++ ++GY F    LL  A  H S    +     Y+RLEFLGD +L ++    LF  + 
Sbjct: 1236 NQIQSKLGYCFKYPKLLRSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMVCVNHLFERYP 1295

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDL-ASFIRVSSDLRKDVCSFMTSIQA------- 116
                  L+    ++VS +    +A  L+L    I +S+ L+  + S+   +QA       
Sbjct: 1296 DKDPQWLTEHKMAMVSNKFLGSLAVNLNLHVHLIHISNTLQGQITSYTEELQAMKIKMEG 1355

Query: 117  ----------------DVVESLIAALYLDGGIEVAGTFVDKYWKQ 145
                            D+VE+ + A+++D         VD+++++
Sbjct: 1356 NLEAWTYTNEPPKCLPDIVEAYLGAIFVDSNFNF--DVVDEFFRK 1398


>gi|6323895|ref|NP_013966.1| Rnt1p [Saccharomyces cerevisiae S288c]
 gi|2500557|sp|Q02555|RNT1_YEAST RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|1185416|gb|AAB04172.1| Rnt1p [Saccharomyces cerevisiae]
 gi|151945944|gb|EDN64176.1| conserved protein [Saccharomyces cerevisiae YJM789]
 gi|190408465|gb|EDV11730.1| ribonuclease III [Saccharomyces cerevisiae RM11-1a]
 gi|256271587|gb|EEU06629.1| Rnt1p [Saccharomyces cerevisiae JAY291]
 gi|285814244|tpg|DAA10139.1| TPA: Rnt1p [Saccharomyces cerevisiae S288c]
 gi|323303453|gb|EGA57248.1| Rnt1p [Saccharomyces cerevisiae FostersB]
 gi|323332152|gb|EGA73563.1| Rnt1p [Saccharomyces cerevisiae AWRI796]
          Length = 471

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 3/92 (3%)

Query: 41  ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
           ERLEFLGD IL  +++ +++N F    EG+LS    +LVS E   Q +   +    ++ +
Sbjct: 238 ERLEFLGDSILNSVMTLIIYNKFPDYSEGQLSTLRMNLVSNEQIKQWSIMYNFHEKLKTN 297

Query: 101 SDLRKDVCSFMT---SIQADVVESLIAALYLD 129
            DL+ +  +F      + ADV E+ I  L  D
Sbjct: 298 FDLKDENSNFQNGKLKLYADVFEAYIGGLMED 329


>gi|259148825|emb|CAY82070.1| Rnt1p [Saccharomyces cerevisiae EC1118]
          Length = 471

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 3/92 (3%)

Query: 41  ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
           ERLEFLGD IL  +++ +++N F    EG+LS    +LVS E   Q +   +    ++ +
Sbjct: 238 ERLEFLGDSILNSVMTLIIYNKFPDYSEGQLSTLRMNLVSNEQIKQWSIMYNFHEKLKTN 297

Query: 101 SDLRKDVCSFMT---SIQADVVESLIAALYLD 129
            DL+ +  +F      + ADV E+ I  L  D
Sbjct: 298 FDLKDENSNFQNGKLKLYADVFEAYIGGLMED 329


>gi|320527636|ref|ZP_08028810.1| RNase3 domain protein [Solobacterium moorei F0204]
 gi|320131957|gb|EFW24513.1| RNase3 domain protein [Solobacterium moorei F0204]
          Length = 373

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 84/199 (42%), Gaps = 29/199 (14%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLL---FNH 62
           + ++  IGY F N+ LLE+A T  S S  +  E  E LEF+GD+ L + I  +L   F +
Sbjct: 8   NDIQNIIGYTFKNQELLEQAFTRRSYSMENGGEHNEVLEFIGDKALDIAIVKILSEEFGY 67

Query: 63  FDSAK----------------------EGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
           F+ ++                      EGEL+     +V   T S     L L  ++ + 
Sbjct: 68  FNKSEQRRSNYYYSPKVYDGTFSSDKDEGELTEIKKRIVKKTTLSDAIDNLGLQHYLIMG 127

Query: 101 SDLRKDVCSFMTSIQADVVESLIAALYLDG--GIEVAGTFVDKYWKQRALKSGKFRRDAK 158
              RK       S + D+ E++I A+ LD    I +    V+   +   +  G       
Sbjct: 128 RGDRKKHVERSNSTKEDLFEAIIGAIALDSRWDINMIQETVENMIEIDDI-IGSDEDSYI 186

Query: 159 TELQEWAHAKFGVTPEYKV 177
            E+Q W+   + V P+Y V
Sbjct: 187 EEIQNWSLKHYDVLPDYSV 205


>gi|327297344|ref|XP_003233366.1| dicer-like protein 1 [Trichophyton rubrum CBS 118892]
 gi|326464672|gb|EGD90125.1| dicer-like protein 1 [Trichophyton rubrum CBS 118892]
          Length = 1519

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 70/164 (42%), Gaps = 28/164 (17%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64
            + ++ ++GY F    LL  A  H S    +     Y+RLEFLGD +L ++    LF  + 
Sbjct: 1236 NQIQSKLGYCFKYPKLLRSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMVCVNHLFERYP 1295

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDL-ASFIRVSSDLRKDVCSFMTSIQA------- 116
                  L+    ++VS +    +A  L+L    I +S+ L+  + S+   +QA       
Sbjct: 1296 DKDPQWLTEHKMAMVSNKFLGSLAVSLNLHVHLIHISNTLQGQITSYTEELQAMKIKMEG 1355

Query: 117  ----------------DVVESLIAALYLDG--GIEVAGTFVDKY 142
                            D+VE+ + A+++D     +V   F  K+
Sbjct: 1356 NLEAWTYTNEPPKCLPDIVEAYLGAIFVDSNFNFDVVDDFFRKF 1399


>gi|302662009|ref|XP_003022664.1| hypothetical protein TRV_03185 [Trichophyton verrucosum HKI 0517]
 gi|291186623|gb|EFE42046.1| hypothetical protein TRV_03185 [Trichophyton verrucosum HKI 0517]
          Length = 1510

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 70/164 (42%), Gaps = 28/164 (17%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64
            + ++ ++GY F    LL  A  H S    +     Y+RLEFLGD +L ++    LF  + 
Sbjct: 1227 NQIQSKLGYCFKYPKLLRSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMVCVNHLFERYP 1286

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDL-ASFIRVSSDLRKDVCSFMTSIQA------- 116
                  L+    ++VS +    +A  L+L    I +S+ L+  + S+   +QA       
Sbjct: 1287 DKDPQWLTEHKMAMVSNKFLGSLAVSLNLHVHLIHISNTLQGQITSYTEELQAMKIKMEG 1346

Query: 117  ----------------DVVESLIAALYLDG--GIEVAGTFVDKY 142
                            D+VE+ + A+++D     +V   F  K+
Sbjct: 1347 NLEAWTYTNEPPKCLPDIVEAYLGAIFVDSNFNFDVVDDFFRKF 1390


>gi|284050833|ref|ZP_06381043.1| ribonuclease III [Arthrospira platensis str. Paraca]
          Length = 120

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 59/108 (54%), Gaps = 8/108 (7%)

Query: 5   RYSTLEK---RIGYAFANR---SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58
           R   LEK   R+G +  ++    LL+ ALTH S+S   Q++YE+LEF+GD ++ L  S L
Sbjct: 12  RQHQLEKLIERLGLSPQHKIAWQLLDLALTHPSVSS--QDNYEQLEFVGDSVVRLAASEL 69

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD 106
           LF  + +A  GE +   + LVS    ++++    L  ++ V     +D
Sbjct: 70  LFETYPNAPVGEFAAVRSILVSDRILAEISESYGLGRYLLVGGSATRD 117


>gi|302511053|ref|XP_003017478.1| hypothetical protein ARB_04359 [Arthroderma benhamiae CBS 112371]
 gi|291181049|gb|EFE36833.1| hypothetical protein ARB_04359 [Arthroderma benhamiae CBS 112371]
          Length = 1510

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 70/164 (42%), Gaps = 28/164 (17%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64
            + ++ ++GY F    LL  A  H S    +     Y+RLEFLGD +L ++    LF  + 
Sbjct: 1227 NQIQSKLGYCFKYPKLLRSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMVCVNHLFERYP 1286

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDL-ASFIRVSSDLRKDVCSFMTSIQA------- 116
                  L+    ++VS +    +A  L+L    I +S+ L+  + S+   +QA       
Sbjct: 1287 DKDPQWLTEHKMAMVSNKFLGSLAVSLNLHVHLIHISNTLQGQITSYTEELQAMKIKMEG 1346

Query: 117  ----------------DVVESLIAALYLDG--GIEVAGTFVDKY 142
                            D+VE+ + A+++D     +V   F  K+
Sbjct: 1347 NLEAWTYTNEPPKCLPDIVEAYLGAIFVDSNFNFDVVDDFFRKF 1390


>gi|50294317|ref|XP_449570.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49528884|emb|CAG62546.1| unnamed protein product [Candida glabrata]
          Length = 449

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 6/114 (5%)

Query: 20  RSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
           R  + K+L +  +    S   + + ERLEFLGD IL  +++ +++N F S  EG L+   
Sbjct: 190 RVFMHKSLVNDKVYLNESDIIKSNNERLEFLGDSILNTVMTMIIYNKFPSLNEGNLTELR 249

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
             LV  ET  + +   +L   ++  S+L  DV    +   AD+ E+ I  L  D
Sbjct: 250 KKLVKNETLREWSELYELPKQLK--SNLSPDVDLSTSKTSADIFEAYIGGLMED 301


>gi|323347050|gb|EGA81326.1| Rnt1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 441

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 3/92 (3%)

Query: 41  ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
           ERLEFLGD IL  +++ +++N F    EG+LS    +LVS E   Q +   +    ++ +
Sbjct: 238 ERLEFLGDSILNSVMTLIIYNKFPDYSEGQLSTLRMNLVSNEQIKQWSIMYNFHEKLKTN 297

Query: 101 SDLRKDVCSFMT---SIQADVVESLIAALYLD 129
            DL+ +  +F      + ADV E+ I  L  D
Sbjct: 298 FDLKDENSNFQNGKLKLYADVFEAYIGGLMED 329


>gi|316975421|gb|EFV58865.1| putative RNase3 domain protein [Trichinella spiralis]
          Length = 1903

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 24/149 (16%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFDS 65
            S  E  IGY F +RSLL +ALTHS+  ++   + Y+RLEFLGD +L  LI+  L+     
Sbjct: 1653 SQFEDIIGYRFKDRSLLVQALTHSTYFYNEVTDCYQRLEFLGDAVLDHLITRHLYEDKRM 1712

Query: 66   AKEGELSVRFNSLVSAETCS----QVARELDLASFIRVSSDLRKDVCSFMTSIQ------ 115
               G L+   ++L     C      + + +   + I+ +++  ++V   + ++       
Sbjct: 1713 HSPGMLTDLRSALYFMYLCPGLMMMIEKFVKTLNIIKENANFDREVRVHLLNLYLLEGEE 1772

Query: 116  -------------ADVVESLIAALYLDGG 131
                          D+ ES+  A+YLD G
Sbjct: 1773 ENAEEQVEVPKALGDIFESVAGAIYLDSG 1801



 Score = 38.9 bits (89), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 28/127 (22%), Positives = 59/127 (46%), Gaps = 19/127 (14%)

Query: 26   ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85
            A+T S+++ ++  + E LE LGD  L  + +   +  +    EG+LS+  + ++S     
Sbjct: 1406 AITASAVAETF--NLEGLEILGDSFLKYVTTVYCYKAYSKMHEGKLSLLRSRMISNYNLY 1463

Query: 86   QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV---DKY 142
            ++ +              RK++  +M +I+ D  ++ +   Y+    EV  T +   DK 
Sbjct: 1464 KLGK--------------RKNIPQYMIAIKFDPSDTWLPPCYVPLNCEVQDTAIEEEDKL 1509

Query: 143  WKQRALK 149
             +QR + 
Sbjct: 1510 MEQRLMN 1516


>gi|119182644|ref|XP_001242444.1| hypothetical protein CIMG_06340 [Coccidioides immitis RS]
          Length = 390

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 53/100 (53%), Gaps = 1/100 (1%)

Query: 29  HSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVA 88
           H+    +   SY+RLE LGD  L ++ + L+++ F +   G +S     LV  ET +Q +
Sbjct: 158 HAQAPSAVHSSYDRLEILGDAYLEVIATRLIWDRFQTLPAGRMSQIRELLVKNETLAQFS 217

Query: 89  RELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
                   +++++D+R     +M  ++ D+ E+ +AA+ L
Sbjct: 218 ERYGFDRRVKIATDIRSQAKRWM-KVKGDIFEAYVAAVIL 256


>gi|195572986|ref|XP_002104476.1| Dicer-1 [Drosophila simulans]
 gi|194200403|gb|EDX13979.1| Dicer-1 [Drosophila simulans]
          Length = 1533

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 1/118 (0%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1277 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1336

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
                G L+   ++LV+    + +A       F R  S    DV      IQ +   S+
Sbjct: 1337 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHSI 1394


>gi|194910778|ref|XP_001982226.1| GG12488 [Drosophila erecta]
 gi|190656864|gb|EDV54096.1| GG12488 [Drosophila erecta]
          Length = 2249

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 1/113 (0%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1993 FEVFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2052

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
                G L+   ++LV+    + +A       F R  S    DV      IQ +
Sbjct: 2053 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQE 2105


>gi|167046032|gb|ABZ10547.1| dicer-like protein E [Trichoplax adhaerens]
          Length = 359

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 1/117 (0%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           +++E  + Y+F NRSLL  ALTH S S     SYE+L FLGD +L   I   L+  +   
Sbjct: 171 NSVETILNYSFRNRSLLMLALTHKSYSGLESISYEKLAFLGDTLLIYQICLFLYTQYTDY 230

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASF-IRVSSDLRKDVCSFMTSIQADVVESL 122
           +  +  +    L        VA   DL  F +  S +L   +     +++AD V+S 
Sbjct: 231 QPKDYHLLLEYLTCNRMYGIVAIASDLCKFLLHKSRELTLQIDEIYQALEADDVQSF 287


>gi|240275432|gb|EER38946.1| ATP-dependent helicase DCL1 [Ajellomyces capsulatus H143]
          Length = 495

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 70/163 (42%), Gaps = 28/163 (17%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            R+GY F    LL  A TH+S   ++     Y+RLEFLGD +L ++    L++H+     
Sbjct: 155 NRLGYHFTYPRLLRSAFTHASYPSAWSTVPCYQRLEFLGDSLLDMVCVEYLYHHYPDRDP 214

Query: 69  GELSVRFNSLVSAETCSQVARELDL-ASFIRVSSDLRKDVCSFMTSIQ------------ 115
             L+    ++VS +    V  +L L    + +S+ L   +  +   I+            
Sbjct: 215 QWLTEHKMAMVSNKFLGAVTVKLGLHKHLLYISNALFGQITRYAEEIEVAVAESADSPDA 274

Query: 116 -----------ADVVESLIAALYLDGG--IEVAGTFVDKYWKQ 145
                       D++E+ I A+++D     EV   F  +Y KQ
Sbjct: 275 WTTTSDPPKCLPDMLEAYIGAIFVDSNFSFEVVEDFFQRYLKQ 317


>gi|170591572|ref|XP_001900544.1| Type III restriction enzyme, res subunit family protein [Brugia
            malayi]
 gi|158592156|gb|EDP30758.1| Type III restriction enzyme, res subunit family protein [Brugia
            malayi]
          Length = 1856

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 72/166 (43%), Gaps = 38/166 (22%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
             ++S LE  IGY F +R+ L +A TH+S   +     Y+RLEFLGD +L  +I+  LF H
Sbjct: 1588 FQFSKLEDCIGYRFHDRAYLLQAFTHASYYKNRITGCYQRLEFLGDAVLDYVITRFLFQH 1647

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELD-----LASFIRVSSDLRKDVC--------- 108
                  G L+   ++LV+    + +A + +     +A   R+   + K VC         
Sbjct: 1648 SAHYSPGVLTDLRSALVNNTIFASLAVKYNFHKHFIAMCPRLHHMIEKFVCLCAEKNLSS 1707

Query: 109  ------SFMTSI-----------------QADVVESLIAALYLDGG 131
                   +M +                    D+ ES+  A+YLD G
Sbjct: 1708 ANFNEEMYMVTTEEEIDEGEEEDIEVPKAMGDIFESVAGAIYLDSG 1753


>gi|154283385|ref|XP_001542488.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150410668|gb|EDN06056.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 1359

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 70/163 (42%), Gaps = 28/163 (17%)

Query: 11   KRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
             R+GY F    LL  A TH+S   ++     Y+RLEFLGD +L ++    L++H+     
Sbjct: 1101 NRLGYHFTYPRLLRSAFTHASYPSAWSTVPCYQRLEFLGDSLLDMVCVEYLYHHYPDRDP 1160

Query: 69   GELSVRFNSLVSAETCSQVARELDL-ASFIRVSSDLRKDVCSFMTSIQ------------ 115
              L+    ++VS +    V  +L L    + +S+ L   +  +   I+            
Sbjct: 1161 QWLTEHKMAMVSNKFLGAVTVKLGLHKHLLYISNALFGQITRYAEEIEVAVAESADSPDA 1220

Query: 116  -----------ADVVESLIAALYLDGG--IEVAGTFVDKYWKQ 145
                        D++E+ I A+++D     EV   F  +Y KQ
Sbjct: 1221 WTTTSDPPKCLPDMLEAYIGAIFVDSNFSFEVVEDFFQRYLKQ 1263


>gi|241954756|ref|XP_002420099.1| RNAse III, putative; double-stranded ribonuclease, putative
           [Candida dubliniensis CD36]
 gi|223643440|emb|CAX42319.1| RNAse III, putative [Candida dubliniensis CD36]
          Length = 611

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 65/122 (53%), Gaps = 10/122 (8%)

Query: 17  FANRSLLEKA--LTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
           F +RS +     L  + + HS+ E   RLEF GD IL  L++ ++F  F  + EG+LS  
Sbjct: 252 FVHRSTVNNKQYLEANQLLHSHNE---RLEFYGDSILNNLVTLIIFKEFPDSAEGDLSKI 308

Query: 75  FNSLVSAETCSQVARE--LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
            + LV+ +T  + A +   D     R+S ++ K   +    I ADV E+ I AL L+ G+
Sbjct: 309 RSRLVNNKTLVKFAFQYGFDKKLRTRISENVLK---TGDQKIFADVFEAYIGALALEKGL 365

Query: 133 EV 134
           EV
Sbjct: 366 EV 367


>gi|258571479|ref|XP_002544543.1| predicted protein [Uncinocarpus reesii 1704]
 gi|237904813|gb|EEP79214.1| predicted protein [Uncinocarpus reesii 1704]
          Length = 387

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 1/94 (1%)

Query: 39  SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
           SY+RLE LGD  L ++ + L+++ F S   G +S     LV  ET +Q +        +R
Sbjct: 158 SYDRLEILGDAYLEVIATRLIWDRFQSLPPGRISQIRELLVKNETLAQFSERFKFDQLVR 217

Query: 99  VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
           VS ++R     ++  ++ DV E+  AA+ L   I
Sbjct: 218 VSPEIRSQPKRWV-KVKGDVFEAYAAAVILSDPI 250


>gi|328865990|gb|EGG14376.1| putative RNase III [Dictyostelium fasciculatum]
          Length = 576

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 26/142 (18%)

Query: 16  AFANRSLLEKALTHSSISH----------------SYQESYERLEFLGDRILGLLISTLL 59
           +F N  LL +  TH S                    +    +RLEFLGD IL    S  L
Sbjct: 141 SFENDLLLREIFTHPSSKKINSLNPAEYKLFKDLLPFTTDNQRLEFLGDSILKFCASIYL 200

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS--DLRKDVCSFMTSIQAD 117
           F  +  A EGEL+ R + L +     +   E  +   +R SS  D++K         +AD
Sbjct: 201 FFKYPKANEGELTTRRSELTNNTYLLEKCNEWGIIELLRYSSTEDIKKP--------KAD 252

Query: 118 VVESLIAALYLDGGIEVAGTFV 139
           V+E++  A++L+ G +    F+
Sbjct: 253 VMEAMFGAIFLERGFKEVYRFI 274



 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 54/112 (48%), Gaps = 9/112 (8%)

Query: 22  LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
           LLE A+T      +Y  SY+RLEFLGD  L  ++S  L+  F    EG LS     LV  
Sbjct: 320 LLEDAITCLG-DQNY--SYQRLEFLGDSYLDGIVSHFLYREFPLENEGFLSQARALLVRN 376

Query: 82  ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           E  +Q+++ + L   +   S       +F T    D+ E+ I  + LD  +E
Sbjct: 377 EALAQISQRIKLYQLVTDPS------ATFSTKRLGDLFEAFIGGVLLDNELE 422


>gi|254584338|ref|XP_002497737.1| ZYRO0F12342p [Zygosaccharomyces rouxii]
 gi|238940630|emb|CAR28804.1| ZYRO0F12342p [Zygosaccharomyces rouxii]
          Length = 456

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 6/106 (5%)

Query: 27  LTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQ 86
           LT S +  ++ E   RLEFLGD +L  +I+ +++N F    EG+LS    +LVS E   +
Sbjct: 208 LTESEMIKAHNE---RLEFLGDSVLNTVITMIIYNKFPRYTEGQLSKLRMTLVSNERLKE 264

Query: 87  VARELDLASFIRVSSDLRKDVCSFMT---SIQADVVESLIAALYLD 129
                 L   +R + D+ K+  +F      + ADV E+ I  L  D
Sbjct: 265 WTFMYGLEKKLRTNFDMTKENANFQQGKRKLYADVFEAYIGGLIED 310


>gi|300709179|ref|XP_002996756.1| hypothetical protein NCER_100079 [Nosema ceranae BRL01]
 gi|239606080|gb|EEQ83085.1| hypothetical protein NCER_100079 [Nosema ceranae BRL01]
          Length = 1131

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 4/125 (3%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHFDSA 66
            +EK I Y F N+  +EKA+ H S   +    E +++LE +GD  L L +S  +F  +  A
Sbjct: 981  VEKIINYTFKNKGYIEKAMIHPSYKDNIFGSERFQKLELVGDCFLDLKVSDYIFFKYTDA 1040

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLA--SFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
                L     SLV+  T + +  +  L   SF  +S   R    + ++    D+ E+L  
Sbjct: 1041 DPETLHTHRKSLVNNHTFAMILFKSGLYDFSFTGLSDQTRDFNNNKVSKCYGDIFEALAG 1100

Query: 125  ALYLD 129
            A+ LD
Sbjct: 1101 AVILD 1105


>gi|325091272|gb|EGC44582.1| ATP-dependent helicase DCL1 [Ajellomyces capsulatus H88]
          Length = 1432

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 70/163 (42%), Gaps = 28/163 (17%)

Query: 11   KRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
             R+GY F    LL  A TH+S   ++     Y+RLEFLGD +L ++    L++H+     
Sbjct: 1174 NRLGYHFTYPRLLRSAFTHASYPSAWSTVPCYQRLEFLGDSLLDMVCVEYLYHHYPDRDP 1233

Query: 69   GELSVRFNSLVSAETCSQVARELDL-ASFIRVSSDLRKDVCSFMTSIQ------------ 115
              L+    ++VS +    V  +L L    + +S+ L   +  +   I+            
Sbjct: 1234 QWLTEHKMAMVSNKFLGAVTVKLGLHKHLLYISNALFGQITRYAEEIEVAVAESADSPDA 1293

Query: 116  -----------ADVVESLIAALYLDGG--IEVAGTFVDKYWKQ 145
                        D++E+ I A+++D     EV   F  +Y KQ
Sbjct: 1294 WTTTSDPPKCLPDMLEAYIGAIFVDSNFSFEVVEDFFQRYLKQ 1336



 Score = 37.4 bits (85), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 50/131 (38%), Gaps = 28/131 (21%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
            ++YERLEFLGD  L +  S  LF       E +  V+   L+  +     A  L L  F+
Sbjct: 1005 KNYERLEFLGDCFLKMATSISLFAMNPDNDEFDFHVKRMCLICNQNLFNTAVRLKLYEFV 1064

Query: 98   RVS--------------------SDLRKDVCSFMTSIQADVVESLIAALYLDGG------ 131
            R                      S+  ++  +      AD+ E+LI A  L GG      
Sbjct: 1065 RTQGFSRRNWYPEGIKLLQGKAKSESAQNKQALGDKTIADICEALIGASLLSGGKACRFD 1124

Query: 132  --IEVAGTFVD 140
              ++    FVD
Sbjct: 1125 TAVKAVTVFVD 1135


>gi|320037410|gb|EFW19347.1| hypothetical protein CPSG_03731 [Coccidioides posadasii str.
            Silveira]
          Length = 1465

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 28/167 (16%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
            + ++K++GY F    LL  A TH S   ++     Y+RLEFLGD +L +     +++   
Sbjct: 1189 AQVKKKLGYVFKYPKLLRSAFTHPSYPSAWARVPCYQRLEFLGDALLDMACVEHIYHKHP 1248

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQA------- 116
                  L+    ++VS +    VA  L L S +   S+ L+  + +++  I+A       
Sbjct: 1249 DKDPQWLTEHKMAMVSNKFLGSVAVRLGLHSHLNHFSTSLQSQITNYVEEIEAAELESGD 1308

Query: 117  ----------------DVVESLIAALYLDGG--IEVAGTFVDKYWKQ 145
                            D+VE+ I A+++D     EV   F  K+ K+
Sbjct: 1309 SPDAWTLTSDPPKCLPDMVEAYIGAIFIDSNFSFEVVEEFFQKFLKK 1355


>gi|212723814|ref|NP_001131630.1| hypothetical protein LOC100192986 [Zea mays]
 gi|194692090|gb|ACF80129.1| unknown [Zea mays]
          Length = 365

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 106/248 (42%), Gaps = 40/248 (16%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-----ESYERLEFLGDRILGLLISTL 58
           +   +LE  + Y+F + SLL +ALTH     SYQ       Y+RLEFLGD +L  + +  
Sbjct: 110 INVKSLELLLDYSFNDPSLLMEALTHG----SYQIAGTTPCYQRLEFLGDAVLDHIFTDY 165

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSF------- 110
            ++ +       L+   ++ V+    +  A +  L   +   SS L K +  +       
Sbjct: 166 FYHQYPECTPELLTDLRSASVNNSCYAHAAVKAGLHKHVLHSSSALHKRMADYLDKFEQS 225

Query: 111 -------------MTSIQADVVESLIAALYLDGGIEVAGTFVD-KYWKQRALKSGKFRRD 156
                        +  +  DVVES+  A+Y+D   +    +   K   +  +     + D
Sbjct: 226 FSGPSHGWEAGISLPKVLGDVVESIAGAIYIDAKHDKGVVWRSMKRILEPLVTPDTLQND 285

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQ 213
              ELQE+  +K G T EY VT  +G       +VV E+        A     SK  A++
Sbjct: 286 PVKELQEFCDSK-GYTLEYTVTRDNGVS-----SVVAEVRTEGTTYKATRTGFSKLDAKK 339

Query: 214 VAAAEVLK 221
           +AA+ VL+
Sbjct: 340 LAASSVLR 347


>gi|126134051|ref|XP_001383550.1| hypothetical protein PICST_30953 [Scheffersomyces stipitis CBS
           6054]
 gi|126095699|gb|ABN65521.1| predicted protein [Scheffersomyces stipitis CBS 6054]
          Length = 566

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 65/125 (52%), Gaps = 10/125 (8%)

Query: 19  NRSLLEKALTHSSISHS---------YQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           +++L E+   H S+ +               ERLEFLGD +L  L++ ++++ F SA EG
Sbjct: 210 DQTLYERVFVHKSVVNGKTYLDQNDLINSHNERLEFLGDSVLNNLVTLIIYDKFPSASEG 269

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           +L+   + L+   T +Q + E      ++  +D  + + +    + AD+ E+ I AL ++
Sbjct: 270 KLTKMRSQLIDNHTLTQFSFEYGFDKRLKTKTD-EEILKTGDQKVYADIFEAYIGALSVE 328

Query: 130 GGIEV 134
            G+++
Sbjct: 329 RGLDL 333


>gi|15150411|gb|AAK84929.1| SD01621p [Drosophila melanogaster]
          Length = 865

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 1/113 (0%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 609 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 668

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
               G L+   ++LV+    + +A       F R  S    DV      IQ +
Sbjct: 669 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQE 721


>gi|195996297|ref|XP_002108017.1| hypothetical protein TRIADDRAFT_52064 [Trichoplax adhaerens]
 gi|190588793|gb|EDV28815.1| hypothetical protein TRIADDRAFT_52064 [Trichoplax adhaerens]
          Length = 707

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 1/117 (0%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           +++E  + Y+F NRSLL  ALTH S S     SYE+L FLGD +L   I   L+  +   
Sbjct: 441 NSVETILNYSFRNRSLLMLALTHKSYSGLESISYEKLAFLGDTLLIYQICLFLYTQYTDY 500

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASF-IRVSSDLRKDVCSFMTSIQADVVESL 122
           +  +  +    L        VA   DL  F +  S +L   +     +++AD V+S 
Sbjct: 501 QPKDYHLLLEYLTCNRMYGIVAIASDLCKFLLHKSRELTLQIDEIYQALEADDVQSF 557


>gi|158706444|sp|Q1DW80|DCL2_COCIM RecName: Full=Dicer-like protein 2; Includes: RecName:
            Full=Endoribonuclease DCL2; Includes: RecName:
            Full=ATP-dependent helicase DCL2
          Length = 1478

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 20/134 (14%)

Query: 16   AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
             F+N SL+  A++ S+   +   +Y+RLEFLGD +L L  S  L        EG L++R 
Sbjct: 1011 GFSNLSLVLTAISSSAAREA--SNYQRLEFLGDSLLKLHTSIQLAADHPLWPEGRLTMRK 1068

Query: 76   NSLVSAETCSQVARELDLASFIRV------------------SSDLRKDVCSFMTSIQAD 117
             ++VS    +  A +  L  FI                    + D+ +      T + AD
Sbjct: 1069 GNIVSNGYLANAALQTGLDKFILTKPFTGAKWRPSYNTDHINTGDMTEPTREMSTKVLAD 1128

Query: 118  VVESLIAALYLDGG 131
            VVE+LI A  +DGG
Sbjct: 1129 VVEALIGAANIDGG 1142



 Score = 48.1 bits (113), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 17/96 (17%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLI------STLLF 60
            S +E  +GY F  + LL  A+TH S S     SY+RLEF+GD IL +++      S   F
Sbjct: 1185 SEIEGLVGYTFKKKPLLLAAVTHPS-SKGSGHSYQRLEFVGDSILDIIVVQELFESPRCF 1243

Query: 61   NHFDSAKEGELSVRFNSLVSAE----TCSQVARELD 92
            +HFD      + +   +LV+A+     C    RE D
Sbjct: 1244 HHFD------MHLMRTALVNADFLAFLCMNAYREED 1273


>gi|195502701|ref|XP_002098342.1| GE24009 [Drosophila yakuba]
 gi|194184443|gb|EDW98054.1| GE24009 [Drosophila yakuba]
          Length = 2250

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 1/113 (0%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1994 FDEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2053

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
                G L+   ++LV+    + +A       F R  S    DV      IQ +
Sbjct: 2054 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQE 2106


>gi|303314275|ref|XP_003067146.1| Type III restriction enzyme, res subunit family protein [Coccidioides
            posadasii C735 delta SOWgp]
 gi|240106814|gb|EER25001.1| Type III restriction enzyme, res subunit family protein [Coccidioides
            posadasii C735 delta SOWgp]
          Length = 1487

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 28/167 (16%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
            + ++K++GY F    LL  A TH S   ++     Y+RLEFLGD +L +     +++   
Sbjct: 1211 AQVKKKLGYVFKYPKLLRSAFTHPSYPSAWARVPCYQRLEFLGDALLDMACVEHIYHKHP 1270

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQA------- 116
                  L+    ++VS +    VA  L L S +   S+ L+  + +++  I+A       
Sbjct: 1271 DKDPQWLTEHKMAMVSNKFLGSVAVRLGLHSHLNHFSTSLQSQITNYVEEIEAAELESGD 1330

Query: 117  ----------------DVVESLIAALYLDGG--IEVAGTFVDKYWKQ 145
                            D+VE+ I A+++D     EV   F  K+ K+
Sbjct: 1331 SPDAWTLTSDPPKCLPDMVEAYIGAIFIDSNFSFEVVEEFFQKFLKK 1377


>gi|238881386|gb|EEQ45024.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 611

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 61/130 (46%), Gaps = 14/130 (10%)

Query: 16  AFANRSLLEKALTHSSI---------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
              N  L E+   H S          +H      ERLEF GD IL  L + ++F  F  +
Sbjct: 241 PINNPKLFERVFIHKSTVNNKQYLEANHLLHSHNERLEFYGDSILNNLATLIIFKEFPDS 300

Query: 67  KEGELSVRFNSLVSAETCSQVARE--LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            EG+LS   + LVS +T  ++A +   D     R+S D+ K   +    I ADV E+ I 
Sbjct: 301 TEGDLSKIRSKLVSNKTLIKIAFQYGFDKKLRSRISDDVLK---TGDKKIFADVFEAYIG 357

Query: 125 ALYLDGGIEV 134
           AL ++ G ++
Sbjct: 358 ALAMERGFDL 367


>gi|119498655|ref|XP_001266085.1| RNase3 domain protein [Neosartorya fischeri NRRL 181]
 gi|119414249|gb|EAW24188.1| RNase3 domain protein [Neosartorya fischeri NRRL 181]
          Length = 373

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 4/123 (3%)

Query: 27  LTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQ 86
            TH  +S   + +Y+RLE LGD  + L+ +  +++ F+    G++S     LV  ET S+
Sbjct: 149 FTHPGLSKDSKSTYDRLEILGDAYIELIATRFIWSRFEDISSGQISQIRELLVKNETLSE 208

Query: 87  VARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD---GGIEVAGTFVDKYW 143
            A    L     V  DL      + T  + D+ ES +AA+ L     G  VA  ++ + W
Sbjct: 209 FATLYGLDGRASVPQDLLNQPRRW-TKTKGDIFESYVAAIILSRPTDGYHVAERWLTQLW 267

Query: 144 KQR 146
             R
Sbjct: 268 LPR 270


>gi|170099920|ref|XP_001881178.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164643857|gb|EDR08108.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1469

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 60/111 (54%), Gaps = 20/111 (18%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQE------SYERLEFLGDRILGLLISTLLFNH 62
            +E  +GY F ++ LL +ALTH+S    YQ+      SYER+EFLGD IL ++++  L+  
Sbjct: 1158 VESMLGYTFNHKLLLIEALTHAS----YQQDQYTSSSYERMEFLGDSILDMIVTDYLYRA 1213

Query: 63   FDSAKE---GELSVRFNSLVSAE----TCSQVARELDLASFIRVSSDLRKD 106
                KE   G + +R +++V+A      C +     D AS  R S D + D
Sbjct: 1214 --PGKEYSPGHMHLRKSAVVNAHFLAFICLRTCLHFD-ASMPRPSPDSQGD 1261


>gi|156371137|ref|XP_001628622.1| predicted protein [Nematostella vectensis]
 gi|156215603|gb|EDO36559.1| predicted protein [Nematostella vectensis]
          Length = 261

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 36/159 (22%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDS 65
           +E  +GY F +R +L +ALTH+S   +Y     SYE+LEFLGD +L  L++  +   F  
Sbjct: 9   VEASLGYTFRDRDILLQALTHTSYPRAYSSVNSSYEQLEFLGDALLDYLVTRHVLQRFPR 68

Query: 66  AKEGELSVRFNSLVSAET--CSQVARELD-------------LASFIRVSSDL-----RK 105
              G ++   +++V+  +  C  + R+               +  F+R  S++     R 
Sbjct: 69  LSPGAITDLRSAVVNNYSLACLTIQRDFHKHMRSMSMALFKVVRRFVRRLSEIEEKETRP 128

Query: 106 DVCSFMT-------------SIQADVVESLIAALYLDGG 131
           D     T              +  D+ E+L+ ALY+D G
Sbjct: 129 DQLLLTTVEDGRGGEAIEVPKVLGDLFEALLGALYVDCG 167


>gi|315044595|ref|XP_003171673.1| hypothetical protein MGYG_06219 [Arthroderma gypseum CBS 118893]
 gi|311344016|gb|EFR03219.1| hypothetical protein MGYG_06219 [Arthroderma gypseum CBS 118893]
          Length = 1518

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 70/164 (42%), Gaps = 28/164 (17%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64
            + ++ ++GY F    LL  A  H S    +     Y+RLEFLGD +L ++    LF  + 
Sbjct: 1236 NQIKSKLGYCFRYPKLLRSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMVCVNHLFERYP 1295

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDL-ASFIRVSSDLRKDVCSFMTSIQA------- 116
                  L+    ++VS +    +A  L+L    I +S+ L+  + S+   +QA       
Sbjct: 1296 DKDPQWLTEHKMAMVSNKFLGSLAVSLNLHVHLIHISNTLQGQITSYTEELQAMKIKMEG 1355

Query: 117  ----------------DVVESLIAALYLDG--GIEVAGTFVDKY 142
                            D+VE+ + A+++D     +V   F  K+
Sbjct: 1356 NLEAWTYTNEPPKCLPDIVEAYLGAMFVDSNFNFDVVDDFFRKF 1399


>gi|195331135|ref|XP_002032258.1| GM23619 [Drosophila sechellia]
 gi|194121201|gb|EDW43244.1| GM23619 [Drosophila sechellia]
          Length = 2249

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 1/113 (0%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1993 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2052

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
                G L+   ++LV+    + +A       F R  S    DV      IQ +
Sbjct: 2053 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQE 2105


>gi|17738129|ref|NP_524453.1| Dicer-1 [Drosophila melanogaster]
 gi|51316117|sp|Q9VCU9|DCR1_DROME RecName: Full=Endoribonuclease Dcr-1; Short=Protein dicer-1
 gi|7300916|gb|AAF56056.1| Dicer-1 [Drosophila melanogaster]
          Length = 2249

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 1/113 (0%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1993 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2052

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
                G L+   ++LV+    + +A       F R  S    DV      IQ +
Sbjct: 2053 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQE 2105


>gi|119190771|ref|XP_001245992.1| hypothetical protein CIMG_05433 [Coccidioides immitis RS]
          Length = 1435

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 20/134 (14%)

Query: 16   AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
             F+N SL+  A++ S+   +   +Y+RLEFLGD +L L  S  L        EG L++R 
Sbjct: 968  GFSNLSLVLTAISSSAAREA--SNYQRLEFLGDSLLKLHTSIQLAADHPLWPEGRLTMRK 1025

Query: 76   NSLVSAETCSQVARELDLASFIRV------------------SSDLRKDVCSFMTSIQAD 117
             ++VS    +  A +  L  FI                    + D+ +      T + AD
Sbjct: 1026 GNIVSNGYLANAALQTGLDKFILTKPFTGAKWRPSYNTDHINTGDMTEPTREMSTKVLAD 1085

Query: 118  VVESLIAALYLDGG 131
            VVE+LI A  +DGG
Sbjct: 1086 VVEALIGAANIDGG 1099



 Score = 48.1 bits (113), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 17/96 (17%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLI------STLLF 60
            S +E  +GY F  + LL  A+TH S S     SY+RLEF+GD IL +++      S   F
Sbjct: 1142 SEIEGLVGYTFKKKPLLLAAVTHPS-SKGSGHSYQRLEFVGDSILDIIVVQELFESPRCF 1200

Query: 61   NHFDSAKEGELSVRFNSLVSAE----TCSQVARELD 92
            +HFD      + +   +LV+A+     C    RE D
Sbjct: 1201 HHFD------MHLMRTALVNADFLAFLCMNAYREED 1230


>gi|299747526|ref|XP_001837094.2| hypothetical protein CC1G_00230 [Coprinopsis cinerea okayama7#130]
 gi|298407559|gb|EAU84711.2| hypothetical protein CC1G_00230 [Coprinopsis cinerea okayama7#130]
          Length = 1499

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 76/167 (45%), Gaps = 35/167 (20%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            +E  IG+ F    LL + LTH+S+  S   +YERLEF+GD IL  ++   +F+   +   
Sbjct: 1213 VEGIIGHRFQQPHLLAQILTHTSVHGSKVLTYERLEFIGDAILDFMVIRHIFDRERTLSP 1272

Query: 69   GELSVRFNSLVSAETCSQVA------RELDLASFIRVSSDL---------RKD------- 106
            G L++   ++V+  T + V       + L   S+ ++SS +         R D       
Sbjct: 1273 GGLTMLKGAMVANSTLATVCILSGIYKHLVFGSY-QLSSAIEDYAEAINERADKEYALAE 1331

Query: 107  -----VCSFMTSIQ-----ADVVESLIAALYLDGGIEVAGT--FVDK 141
                    F   I+     +DV+ES+I ALY+       GT  F DK
Sbjct: 1332 QENRMPGQFWPDIEPPKALSDVIESIIGALYISDNFCPVGTEAFFDK 1378



 Score = 41.6 bits (96), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 2/89 (2%)

Query: 11   KRIGYAFANRSLLEKAL--THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            K +   F + ++ E+ L    +++S   + +YERLE LGD  L  L S ++F    +  E
Sbjct: 958  KELNMQFFDNAIDEELLYMATTTVSAEMEHNYERLELLGDAFLKYLASVVVFVMNPTQNE 1017

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFI 97
            G L V    L+S +     A ++ L ++I
Sbjct: 1018 GSLHVARQRLISNKALLACATQVGLPAYI 1046


>gi|170049284|ref|XP_001855187.1| endoribonuclease Dicer [Culex quinquefasciatus]
 gi|167871117|gb|EDS34500.1| endoribonuclease Dicer [Culex quinquefasciatus]
          Length = 1665

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 36/166 (21%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            +E+ + Y F +R+ L +ALTH+S  ++    SY++LEF+GD +L  LIS  ++    +  
Sbjct: 1413 IERILDYTFKDRTYLLQALTHASYPTNRITGSYQQLEFVGDAVLDFLISAYIYEQNPTMS 1472

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ------------ 115
             G+L+   ++LV+  T + +     L  +I   S    D  S   + Q            
Sbjct: 1473 PGQLTDLRSALVNNITLACILVRHGLHLYILSESASLTDTVSKFVAFQEAHKHEITDQVN 1532

Query: 116  -----------------------ADVVESLIAALYLDGGIEVAGTF 138
                                    DV ESLI A++LD G ++  T+
Sbjct: 1533 LLSEESERCQGAMAEFVDVPKALGDVFESLIGAVFLDSGNDLEVTW 1578


>gi|167046034|gb|ABZ10548.1| dicer-like protein E [Placozoa sp. DMJ-2008]
          Length = 359

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 1/117 (0%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           +++E  + Y+F NRSLL  ALTH S S     SYE+L FLGD +L   I   L+  +   
Sbjct: 171 NSVETILNYSFRNRSLLMLALTHKSYSGLESISYEKLAFLGDTLLIYQIYLFLYTQYTDY 230

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASF-IRVSSDLRKDVCSFMTSIQADVVESL 122
           +  +  +    L        VA   DL  F +  S +L   +     +++AD V+S 
Sbjct: 231 QPKDYHLLLEYLTCNRMYGIVAIASDLCKFLLHKSRELTLQIDEIYQALEADDVQSF 287


>gi|303315249|ref|XP_003067632.1| Type III restriction enzyme, res subunit family protein [Coccidioides
            posadasii C735 delta SOWgp]
 gi|240107302|gb|EER25487.1| Type III restriction enzyme, res subunit family protein [Coccidioides
            posadasii C735 delta SOWgp]
          Length = 1448

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 20/134 (14%)

Query: 16   AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
             F+N SL+  A++ S+   +   +Y+RLEFLGD +L L  S  L        EG L++R 
Sbjct: 968  GFSNLSLVLTAISSSAAREA--SNYQRLEFLGDSLLKLHTSIQLAADHPLWPEGRLTMRK 1025

Query: 76   NSLVSAETCSQVARELDLASFIRV------------------SSDLRKDVCSFMTSIQAD 117
             ++VS    +  A +  L  FI                    + D+ +      T + AD
Sbjct: 1026 GNVVSNGYLANAALQTGLDKFILTKPFTGAKWRPSYNTDHINTGDMTEPTREMSTKVLAD 1085

Query: 118  VVESLIAALYLDGG 131
            VVE+LI A  +DGG
Sbjct: 1086 VVEALIGAANIDGG 1099



 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 17/96 (17%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL------F 60
            S +E  +GY F  + LL  A+TH S S     SY+RLEF+GD IL +++   L      F
Sbjct: 1142 SEIEGLVGYTFKKKPLLLAAVTHPS-SKGSGHSYQRLEFVGDSILDIIVVQELFESPRGF 1200

Query: 61   NHFDSAKEGELSVRFNSLVSAE----TCSQVARELD 92
            +HFD      + +   +LV+A+     C    RE D
Sbjct: 1201 HHFD------MHLMRTALVNADFLAFLCMNAYREED 1230


>gi|296817299|ref|XP_002848986.1| RNase3 domain-containing protein [Arthroderma otae CBS 113480]
 gi|238839439|gb|EEQ29101.1| RNase3 domain-containing protein [Arthroderma otae CBS 113480]
          Length = 378

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 66/130 (50%), Gaps = 7/130 (5%)

Query: 17  FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           F +  ++E+    S  S   ++SY+RLE LGD  + L+ + L++ +F +   G+++    
Sbjct: 125 FTHTGIVERGPGSSLCS---EKSYDRLEVLGDAYIELISTRLIWENFPTLPAGKMAQARE 181

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD---GGIE 133
           ++V  ET +Q A        ++ +SD R  V    T I+ DV E+ +AA  +     G+ 
Sbjct: 182 TMVKNETLAQYATAYGFDELLKTTSDYR-SVPKRWTKIRGDVFEAYVAAAIISDPKDGLR 240

Query: 134 VAGTFVDKYW 143
              +++ + W
Sbjct: 241 AVESWLTQLW 250


>gi|312376926|gb|EFR23879.1| hypothetical protein AND_11908 [Anopheles darlingi]
          Length = 994

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +   E+ +GY F +RS L +A+TH+S S +   + Y+RLEFLGD IL  LI+  L+    
Sbjct: 711 FEVFERSLGYHFQDRSYLLQAMTHASYSPNRLTDCYQRLEFLGDAILDYLITRHLYEDRR 770

Query: 65  SAKEGELSVRFNSLVS 80
               G L+   ++LV+
Sbjct: 771 QHSPGALTDLRSALVN 786


>gi|305354766|emb|CBL30926.1| Dicer protein [Echinococcus multilocularis]
          Length = 1981

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 19/116 (16%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISH-----------------SYQESYERLEFLG 47
            R+S LE+ IGY F NR LL +A THS+                    S    YERLEFLG
Sbjct: 1695 RFSKLEEIIGYTFKNRRLLIEAFTHSTCRDLHGPPSDDDGGFHGSVTSISGGYERLEFLG 1754

Query: 48   DRILGLLISTLLFNHFDSAK--EGELSVRFNSLVSAETCSQVARELDLASFIRVSS 101
            D +L   ++  LF    +A+   G L+   ++LV+      +A    L +F+R ++
Sbjct: 1755 DAVLDYAVTRFLFTTDATARLSPGALTDLRSALVNNVVFGALAVRHGLHAFLRAAA 1810


>gi|195391256|ref|XP_002054279.1| GJ24359 [Drosophila virilis]
 gi|194152365|gb|EDW67799.1| GJ24359 [Drosophila virilis]
          Length = 2250

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 1/113 (0%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E  +GY F++RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1994 FEEFESSLGYTFSDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2053

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
                G L+   ++LV+    + +A       + R  S    DV      IQ +
Sbjct: 2054 QHSPGALTDLRSALVNNTIFASLAVRHGFHKYFRHLSPGLNDVIDRFVRIQQE 2106


>gi|194744012|ref|XP_001954492.1| GF18290 [Drosophila ananassae]
 gi|190627529|gb|EDV43053.1| GF18290 [Drosophila ananassae]
          Length = 2252

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 1/118 (0%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E  +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1996 FEEFEASLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2055

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
                G L+   ++LV+    + +A       F R  S    DV      IQ +   S+
Sbjct: 2056 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHSI 2113


>gi|116788280|gb|ABK24820.1| unknown [Picea sitchensis]
          Length = 330

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 107/252 (42%), Gaps = 47/252 (18%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNH 62
           +RY  LE  + Y+F   +L+ +++TH+S    S+   Y+RLEFLGD +L  LI+   +  
Sbjct: 82  VRY--LESLLKYSFRVHTLVVESVTHASYKEPSFSGCYQRLEFLGDAVLDYLITLYFYKT 139

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSF----------- 110
           +     G L+   ++ V+ +  +Q A + +L   +R  SS+L   +  F           
Sbjct: 140 YPGLSPGLLTDLRSAAVNNDCYAQAAVKCNLHQQLRHASSELHNQITEFAKLISSSSASG 199

Query: 111 ------------MTSIQADVVESLIAALYLDGGIEV------AGTFVDKYWKQRALKSGK 152
                       +  +  D++ES+  A+ +D   +           ++     + +K   
Sbjct: 200 DHFFGWTTTEVAVPKVLGDLIESIAGAVLVDSEFDTQLVWNAMKPLLEPLVTPKTIKYQP 259

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC---SKR 209
            R     ELQE    +F     Y   F    +     TV VE+     +    C   +KR
Sbjct: 260 VR-----ELQELCQKEF-----YTCCFDDSQEEGTS-TVKVEVRVKGDSYIETCEASNKR 308

Query: 210 AAEQVAAAEVLK 221
            A+++AA +VLK
Sbjct: 309 TAKKLAAEKVLK 320


>gi|170090528|ref|XP_001876486.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164647979|gb|EDR12222.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 356

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 9/108 (8%)

Query: 41  ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV- 99
           E+ E LGD ++GL +++L+F  +   + G  +     +V   T ++++    L   +R+ 
Sbjct: 105 EKYEHLGDTVIGLSVTSLMFEMYPGLRVGPSTKIRAMIVGNFTLAEISLRYKLPDRLRLH 164

Query: 100 ---SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
              S  LR       T+IQADV ES +  LYLD G+E    +++  ++
Sbjct: 165 PAQSITLRAS-----TNIQADVFESFVGGLYLDQGLEAVKAWLNPLFR 207


>gi|54020492|ref|YP_115922.1| ribonuclease III [Mycoplasma hyopneumoniae 232]
 gi|53987665|gb|AAV27866.1| ribonuclease III [Mycoplasma hyopneumoniae 232]
          Length = 183

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 67/125 (53%), Gaps = 10/125 (8%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI---RV 99
           LEFLGD ++   +S +++++F   +     +R + L S  + +   +++ L +++   R 
Sbjct: 2   LEFLGDSVINYAVSKVIYDNFYKNEGNSTQIR-SLLTSTSSLANATKKVGLMNYVLLGRG 60

Query: 100 SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY-WKQRALKSGKFRRDAK 158
           +S++R++       ++AD+ ES  AA+ LD G E    F+ +Y +K     + K  +D K
Sbjct: 61  ASEIREN-----NKLKADIFESFCAAILLDQGFEKLNEFLSEYLYKDVNFDTEKQYKDPK 115

Query: 159 TELQE 163
           +  QE
Sbjct: 116 SIFQE 120


>gi|125773725|ref|XP_001358121.1| GA18437 [Drosophila pseudoobscura pseudoobscura]
 gi|54637856|gb|EAL27258.1| GA18437 [Drosophila pseudoobscura pseudoobscura]
          Length = 2280

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 1/113 (0%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E  +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 2024 FEEFEASLGYRFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2083

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
                G L+   ++LV+    + +A       F R  S    DV      IQ +
Sbjct: 2084 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQE 2136


>gi|195143531|ref|XP_002012751.1| GL23778 [Drosophila persimilis]
 gi|194101694|gb|EDW23737.1| GL23778 [Drosophila persimilis]
          Length = 2278

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 1/113 (0%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E  +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 2022 FEEFEASLGYRFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2081

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
                G L+   ++LV+    + +A       F R  S    DV      IQ +
Sbjct: 2082 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQE 2134


>gi|159468548|ref|XP_001692436.1| dicer-like protein [Chlamydomonas reinhardtii]
 gi|158278149|gb|EDP03914.1| dicer-like protein [Chlamydomonas reinhardtii]
          Length = 3556

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 9/116 (7%)

Query: 15   YAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
            Y F    L  +ALTH  +SH         Y+RLEFLGD ++G ++S  LF    SA+   
Sbjct: 3277 YCFRRPELCLQALTH--VSHPRAAGCGGGYQRLEFLGDAVMGTVVSFWLFRAGGSAE--A 3332

Query: 71   LSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFMTSIQADVVESLIAA 125
            ++ R  +LVS    +  A  L L   +RV SS L   + +F+  +QA + +  +A+
Sbjct: 3333 MTARRKALVSNGPLAAAAVCLGLQRHLRVGSSALLGTLGAFVEEVQAALEDGSLAS 3388


>gi|167046039|gb|ABZ10551.1| dicer 2 [Nematostella vectensis]
          Length = 1162

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 3/67 (4%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDS 65
            +E  +GY F +R +L +ALTH+S   +Y     SYE+LEFLGD +L  L++  +   F  
Sbjct: 938  VEASLGYTFRDRDILLQALTHTSYPRAYSSVNSSYEQLEFLGDALLDYLVTRHVLQRFPR 997

Query: 66   AKEGELS 72
               G ++
Sbjct: 998  LSPGAIT 1004



 Score = 35.4 bits (80), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 2/77 (2%)

Query: 21  SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
           +L+ +ALT +S +      +ERLE  GD  +   IS LL++ F +  EG LS      VS
Sbjct: 582 TLILRALTTTSANDIID--HERLEIYGDAFIKYAISELLYSDFPNVNEGRLSFLRGLRVS 639

Query: 81  AETCSQVARELDLASFI 97
            +    + R   LA  I
Sbjct: 640 NQQLFYLGRSRGLAPLI 656


>gi|167046028|gb|ABZ10545.1| dicer-like protein D [Trichoplax adhaerens]
          Length = 351

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 67/166 (40%), Gaps = 47/166 (28%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S + +   Y F N   L  A THSS++    E+Y+RLE+LGD IL  L+   ++      
Sbjct: 174 SCILRNTDYQFNNFYWLRIAFTHSSVA---SENYQRLEYLGDAILEYLLIEFVYCRKPYF 230

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ----------- 115
             G++S   + +   +T S +A      + IR  S L+ D+   M SIQ           
Sbjct: 231 GPGKISHFKSVMTRNQTFSLIAIAFQFYTHIRCHSKLKLDI---MDSIQNFKEILLDNHQ 287

Query: 116 ------------------------------ADVVESLIAALYLDGG 131
                                         ADV E+ IAA+YLD G
Sbjct: 288 DDHQPDIGHFANLAYQLYTSNRYQKLPKVCADVFEAFIAAIYLDCG 333


>gi|321460750|gb|EFX71789.1| hypothetical protein DAPPUDRAFT_326825 [Daphnia pulex]
          Length = 204

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 65/130 (50%), Gaps = 19/130 (14%)

Query: 9   LEKRIGYAFANRSLLEKALTH--SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LEK +GY F N+  L+ ALTH  S+ +    +  +R E LGD+ LG LI    +  + + 
Sbjct: 38  LEKILGYEFQNKDNLKLALTHTISNPTKCPSKDSDRSESLGDKFLGALIMVNCYKTYPTY 97

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFI-------RVSSDLRKDVCSFMTSIQADVV 119
             GEL+    +L S  TC+     L + + I       R+S ++          + AD+ 
Sbjct: 98  GAGELA----NLTSMITCNDTFAVLAVPALIPTTIPGERISIEID------YPKVYADLF 147

Query: 120 ESLIAALYLD 129
           E++ A++Y+D
Sbjct: 148 EAVAASIYVD 157


>gi|302896162|ref|XP_003046961.1| hypothetical protein NECHADRAFT_95309 [Nectria haematococca mpVI
            77-13-4]
 gi|256727889|gb|EEU41248.1| hypothetical protein NECHADRAFT_95309 [Nectria haematococca mpVI
            77-13-4]
          Length = 1452

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 90/210 (42%), Gaps = 40/210 (19%)

Query: 13   IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            +GY F   +LL  A  H S  +    +Y+RLEFLGD +L + I   LF  F  A    L+
Sbjct: 1161 VGYRFKWPALLRSAFKHPSWPYDPVPNYQRLEFLGDALLDMAIVDNLFQRFPQADPQWLT 1220

Query: 73   VRFNSLVSAETCSQVARELDL--------ASFI-RVSS----------DLRKDVCSFMTS 113
                ++ S +    +  +LDL        +S I ++SS          D R++  +  T+
Sbjct: 1221 EHKMAMASNQFLGCLCVKLDLHKHLTSTTSSLIGQISSYASELELAEEDARQEAKANKTA 1280

Query: 114  IQ--------------ADVVESLIAALYLDGGIEVA------GTFVDKYWKQRALKSGKF 153
            ++              ADV+E+L+ A+++D   +          F++ Y++  AL     
Sbjct: 1281 MRKDFWLRASAPPKAFADVMEALVGAMFVDAKYDYTVVRNFFTRFIEPYFEDMALYDSFA 1340

Query: 154  RRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
             +   T L +      G T  ++V+  + P
Sbjct: 1341 NKHPVTYLSKKMQQDLGCT-NWRVSAENVP 1369


>gi|255934909|ref|XP_002558481.1| Pc13g00300 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211583101|emb|CAP91099.1| Pc13g00300 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 144

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 72/137 (52%), Gaps = 6/137 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           +SA     +E  + Y F ++SLL+KA      + + +  ++R   +GD  L L+++ L +
Sbjct: 5   LSAESIRAIESILNYEFHDKSLLDKAFEAPGATEA-RGGHQRQALIGDAALKLVLTELGY 63

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
               +A  GE+++   S VS E   ++   L L ++ R++   +  V     S+ A  +E
Sbjct: 64  E--GNASTGEITISRGSRVSNENLKRLGESLGLNAYFRLNPASQGVVPR---SMMATTME 118

Query: 121 SLIAALYLDGGIEVAGT 137
           ++I A+YLD G ++A T
Sbjct: 119 AIIGAVYLDSGKDMATT 135


>gi|85105148|ref|XP_961898.1| hypothetical protein NCU08270 [Neurospora crassa OR74A]
 gi|74616659|sp|Q7S8J7|DCL1_NEUCR RecName: Full=Dicer-like protein 1; Includes: RecName:
            Full=Endoribonuclease dcl-1; Includes: RecName:
            Full=ATP-dependent helicase dcl-1
 gi|28923482|gb|EAA32662.1| predicted protein [Neurospora crassa OR74A]
          Length = 1584

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 3/108 (2%)

Query: 11   KRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            +R+GY F +  LL  A  H +    Y+   SY+RLEFLGD +  ++    LF  F +A  
Sbjct: 1263 ERMGYKFKHPRLLRAAFQHPTYPSLYERLPSYQRLEFLGDALFDMVAVDYLFRKFPAADP 1322

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSFMTSIQ 115
              L+    ++VS +    ++  L     I  +S  + KD+  ++T I+
Sbjct: 1323 QWLTEHKMAMVSNQFLCCLSFHLGFNKCIATMSPSILKDIAEYVTEIE 1370



 Score = 38.1 bits (87), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 46/112 (41%), Gaps = 20/112 (17%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
            ++YERLEFLGD  L +  +  ++       E E  V    L+  +     A E+ L  +I
Sbjct: 1096 DNYERLEFLGDSFLKMATTIAIYTLIPDKGEFEYHVERMLLICNKNLFNNALEIGLEEYI 1155

Query: 98   RV-------------------SSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
            R                    S D R+       SI ADV E+LI A YL G
Sbjct: 1156 RSMSFNRRQWYPEGLILKKGKSKDARQRHVLADKSI-ADVCEALIGAAYLTG 1206


>gi|260945020|ref|XP_002616808.1| hypothetical protein CLUG_04049 [Clavispora lusitaniae ATCC 42720]
 gi|238850457|gb|EEQ39921.1| hypothetical protein CLUG_04049 [Clavispora lusitaniae ATCC 42720]
          Length = 406

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 17/149 (11%)

Query: 41  ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
           ERLEFLGD +L  L++ +L+  F  A EG LS   +SLVS +T ++ + +      +R  
Sbjct: 92  ERLEFLGDSVLNTLVTFILYEKFPFANEGLLSQIRSSLVSNKTLAEFSTQYGFDQSLRCK 151

Query: 101 SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL------------ 148
            D    + +    I AD+ E+ + AL ++ G ++      + W +  +            
Sbjct: 152 VD-ESALRNGKQKIFADIFEAYVGALAMERGFDMNEV---QQWLKALMASKLSEADLAIK 207

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           K+    +DAKTEL         + P YKV
Sbjct: 208 KATPINKDAKTELYSLVGTA-SLHPIYKV 235


>gi|158705874|sp|A4RHU9|DCL2_MAGO7 RecName: Full=Dicer-like protein 2; Includes: RecName:
            Full=Endoribonuclease DCL2; Includes: RecName:
            Full=ATP-dependent helicase DCL2
          Length = 1485

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 2/61 (3%)

Query: 9    LEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
            LE+ +GY+F  +SLL +A+TH+S  I  S   S ERLEFLGD +L  ++   LF+  D A
Sbjct: 1171 LEELLGYSFNKKSLLIEAITHASYNIPGSAGSSLERLEFLGDSVLDFVVVARLFSVKDPA 1230

Query: 67   K 67
             
Sbjct: 1231 P 1231



 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 13/110 (11%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
            +YER+EFLGD +L L  +     +     EG LS+  + LVS     + A  L L  FI 
Sbjct: 1022 NYERVEFLGDAVLKLGAAVTCATNNLHFPEGYLSLLKDRLVSNSRLCKAATALGLDQFII 1081

Query: 99   VSSDLRKDVCSFMTSIQ-------------ADVVESLIAALYLDGGIEVA 135
                  K   + +T+ +             ADV E+LI A Y++GG+  A
Sbjct: 1082 TRQYSLKQWRNMLTAPEPPTNTRKMSSKTLADVTEALIGAAYIEGGMSKA 1131


>gi|58382645|ref|XP_312076.2| AGAP002836-PA [Anopheles gambiae str. PEST]
 gi|55241936|gb|EAA07793.2| AGAP002836-PA [Anopheles gambiae str. PEST]
          Length = 2256

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S S +   + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1979 FEEFEQALGYRFRDRSYLLQAMTHASYSPNRLTDCYQRLEFLGDAILDYLITRHLYEDRR 2038

Query: 65   SAKEGELSVRFNSLVS 80
                G L+   ++LV+
Sbjct: 2039 QHSPGALTDLRSALVN 2054


>gi|268325168|emb|CBH38756.1| conserved hypothetical protein, containing RNase3 and AIR
           carboxylase domain [uncultured archaeon]
 gi|268326276|emb|CBH39864.1| conserved hypothetical protein, containing RNase3 and AIR
           carboxylase domain [uncultured archaeon]
          Length = 421

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 71/143 (49%), Gaps = 7/143 (4%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSIS------HSYQESYERLEFLGDRILGLLISTLLFN 61
           T+E+ I Y+F ++++L +ALT  + +      +   E  E    LGD +L  ++  LL  
Sbjct: 277 TIEENIRYSFLDKNILNRALTRKAYALEQRQRNQACEDQEIFRTLGDAVLKAVLVDLLIK 336

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
                +E E++ +   L   E+ +++ REL +   I +    +K   +    + A+  E+
Sbjct: 337 SGCKTRE-EITRKKIELEREESLAKIGRELGIGESIMLGVGEKKQRANEEPYVLAETFEA 395

Query: 122 LIAALYLDGGIEVAGTFVDKYWK 144
           +I A+YLDG  ++A   +   +K
Sbjct: 396 VIGAIYLDGCYDIAKKIITNLFK 418


>gi|222629185|gb|EEE61317.1| hypothetical protein OsJ_15421 [Oryza sativa Japonica Group]
          Length = 1632

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 39/64 (60%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            LE+ IGY F ++ LL +A  H S S      Y++ EFLGD +L  +I++ L++ +   K 
Sbjct: 1185 LEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQKTEFLGDAVLEYVITSYLYSTYPDIKP 1244

Query: 69   GELS 72
            G+++
Sbjct: 1245 GQIT 1248



 Score = 38.5 bits (88), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 19/125 (15%)

Query: 41   ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL-ASFIRV 99
            +RLEFLGD +L  +I++ L++ +   K G+++   +  V  ++ +  A E  +    I+ 
Sbjct: 1308 KRLEFLGDAVLEYVITSYLYSTYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKD 1367

Query: 100  SSDLRKDVCSFMTSIQ------------------ADVVESLIAALYLDGGIEVAGTFVDK 141
            S+ L   +  F   ++                   D+VES I A+ LD G  +   + + 
Sbjct: 1368 SNHLTSAISKFEMYVKLSNSEKDLLEEPACPKALGDIVESCIGAVLLDSGFNLNYVWKNY 1427

Query: 142  YWKQR 146
             +K R
Sbjct: 1428 GYKHR 1432



 Score = 35.4 bits (80), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 9/74 (12%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VVVEISGLAPAQGMDC------ 206
            + A++ L E   A +   PE+K+    GP H  +FT  VVVEI G A A  ++C      
Sbjct: 1543 KTARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKG-ASATLLECHSDGKL 1601

Query: 207  SKRAAEQVAAAEVL 220
             K+AA++ AA   L
Sbjct: 1602 QKKAAQEHAAQGAL 1615


>gi|145612483|ref|XP_367242.2| hypothetical protein MGG_12357 [Magnaporthe oryzae 70-15]
 gi|145019642|gb|EDK03870.1| hypothetical protein MGG_12357 [Magnaporthe oryzae 70-15]
          Length = 1386

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 2/61 (3%)

Query: 9    LEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
            LE+ +GY+F  +SLL +A+TH+S  I  S   S ERLEFLGD +L  ++   LF+  D A
Sbjct: 1072 LEELLGYSFNKKSLLIEAITHASYNIPGSAGSSLERLEFLGDSVLDFVVVARLFSVKDPA 1131

Query: 67   K 67
             
Sbjct: 1132 P 1132



 Score = 43.5 bits (101), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 13/110 (11%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
            +YER+EFLGD +L L  +     +     EG LS+  + LVS     + A  L L  FI 
Sbjct: 923  NYERVEFLGDAVLKLGAAVTCATNNLHFPEGYLSLLKDRLVSNSRLCKAATALGLDQFII 982

Query: 99   VSSDLRKDVCSFMTSIQ-------------ADVVESLIAALYLDGGIEVA 135
                  K   + +T+ +             ADV E+LI A Y++GG+  A
Sbjct: 983  TRQYSLKQWRNMLTAPEPPTNTRKMSSKTLADVTEALIGAAYIEGGMSKA 1032


>gi|289619621|emb|CBI53904.1| unnamed protein product [Sordaria macrospora]
          Length = 1586

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 3/108 (2%)

Query: 11   KRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            +R+GY F +  LL  A  H +    Y+   SY+RLEFLGD +  ++    LF  F +A  
Sbjct: 1263 ERMGYKFKHPRLLRAAFQHPTYPSLYERLPSYQRLEFLGDALFDMVAVDYLFRKFPAADP 1322

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSFMTSIQ 115
              L+    ++VS +    ++  L     +  +S  + KD+  ++T I+
Sbjct: 1323 QWLTEHKMAMVSNQFLCCLSYHLGFYKCVATMSPSILKDIAEYVTEIE 1370


>gi|261190414|ref|XP_002621616.1| RNase3 domain-containing protein [Ajellomyces dermatitidis
           SLH14081]
 gi|239591039|gb|EEQ73620.1| RNase3 domain-containing protein [Ajellomyces dermatitidis
           SLH14081]
 gi|239614955|gb|EEQ91942.1| RNase3 domain-containing protein [Ajellomyces dermatitidis ER-3]
 gi|327356568|gb|EGE85425.1| hypothetical protein BDDG_08370 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 382

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 63/125 (50%), Gaps = 9/125 (7%)

Query: 27  LTHSSISHSY-----QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
           LTH  I +       +++YER+E LGD  + ++ + L+++ F     G LS     LV  
Sbjct: 144 LTHEGIHNPNTASLSEKNYERMELLGDAYIEIMATRLVWDTFPRLPAGRLSQIRELLVKN 203

Query: 82  ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL---DGGIEVAGTF 138
           ET ++      L   + V  ++R    ++ T ++ D+ E+ +AA+ L   D G+++   +
Sbjct: 204 ETLAEYTTLYGLDQKLMVPPEIRNQAKTW-TKVKGDLFEAYVAAVILSNRDNGVQLVEDW 262

Query: 139 VDKYW 143
           + + W
Sbjct: 263 LTQLW 267


>gi|29424049|gb|AAO73809.1| dicer-1 [Anopheles gambiae]
          Length = 2259

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S S +   + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1982 FEEFEQALGYRFRDRSYLLQAMTHASYSPNRLTDCYQRLEFLGDAILDYLITRHLYEDRR 2041

Query: 65   SAKEGELSVRFNSLVS 80
                G L+   ++LV+
Sbjct: 2042 QHSPGALTDLRSALVN 2057


>gi|327349134|gb|EGE77991.1| dicer [Ajellomyces dermatitidis ATCC 18188]
          Length = 1482

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 6/65 (9%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN---- 61
            +  +E  +GY+F  +  L +A TH S   S   SY+RLEF+GD IL  +I   LFN    
Sbjct: 1151 FQEIESLLGYSFNKKVFLVQAFTHPSNPGSTTSSYQRLEFVGDAILDHIIVHHLFNSSRN 1210

Query: 62   --HFD 64
              HFD
Sbjct: 1211 LPHFD 1215



 Score = 35.8 bits (81), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 58/134 (43%), Gaps = 20/134 (14%)

Query: 16   AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
            AF + SL+  A++ S    +   +Y+R+EFLGD IL    +  L        EG LS   
Sbjct: 977  AFTDLSLVVTAISASVAREA--TNYQRIEFLGDSILKFHTTLQLSAANLVWHEGLLSRAK 1034

Query: 76   NSLVSAETCSQVARELDLASFIRV------------------SSDLRKDVCSFMTSIQAD 117
            +++VS +  S  A E  L  FI V                  S +         T   AD
Sbjct: 1035 DNVVSNKRLSYAAVETGLDKFILVDVFTGAKWRPRYNKVHLESEEQGIPQREMTTKTLAD 1094

Query: 118  VVESLIAALYLDGG 131
            VVE+L+ A  ++GG
Sbjct: 1095 VVEALLGAATIEGG 1108


>gi|240276002|gb|EER39515.1| dicer-like protein [Ajellomyces capsulatus H143]
          Length = 800

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 6/65 (9%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN---- 61
           +  +E  +GY F  +  L +A TH S   S   SY+RLEF+GD IL  +I   LFN    
Sbjct: 461 FQEVESLVGYVFNKKVFLVQAFTHPSNPGSKTSSYQRLEFVGDAILDHIIVYHLFNAPRI 520

Query: 62  --HFD 64
             HFD
Sbjct: 521 LPHFD 525



 Score = 42.7 bits (99), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 60/134 (44%), Gaps = 20/134 (14%)

Query: 16  AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
           AF + SL+  A++ S+   +   +Y+R+EFLGD IL    +  L        EG LS   
Sbjct: 287 AFTDLSLVITAISASAAREA--TNYQRIEFLGDSILKFQTTLQLTAANPIWHEGLLSRAK 344

Query: 76  NSLVSAETCSQVARELDLASFIRVS--------SDLRKDVCS----------FMTSIQAD 117
           +++VS +  S  A E  L  FI +             KD               T   AD
Sbjct: 345 DTVVSNKRLSYAAIETGLDKFILLDVFTGAKWRPPCNKDHLESEEQGVPQREMSTKTLAD 404

Query: 118 VVESLIAALYLDGG 131
           VVE+L+AA  LDGG
Sbjct: 405 VVEALLAAATLDGG 418


>gi|239610437|gb|EEQ87424.1| dicer-like protein 2 [Ajellomyces dermatitidis ER-3]
          Length = 1509

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 6/65 (9%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN---- 61
            +  +E  +GY+F  +  L +A TH S   S   SY+RLEF+GD IL  +I   LFN    
Sbjct: 1177 FQEIESLLGYSFNKKVFLVQAFTHPSNPGSTTSSYQRLEFVGDAILDHIIVHHLFNSSRN 1236

Query: 62   --HFD 64
              HFD
Sbjct: 1237 LPHFD 1241



 Score = 35.8 bits (81), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 58/134 (43%), Gaps = 20/134 (14%)

Query: 16   AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
            AF + SL+  A++ S    +   +Y+R+EFLGD IL    +  L        EG LS   
Sbjct: 1003 AFTDLSLVVTAISASVAREA--TNYQRIEFLGDSILKFHTTLQLSAANLVWHEGLLSRAK 1060

Query: 76   NSLVSAETCSQVARELDLASFIRV------------------SSDLRKDVCSFMTSIQAD 117
            +++VS +  S  A E  L  FI V                  S +         T   AD
Sbjct: 1061 DNVVSNKRLSYAAVETGLDKFILVDVFTGAKWRPRYNKVHLESEEQGIPQREMTTKTLAD 1120

Query: 118  VVESLIAALYLDGG 131
            VVE+L+ A  ++GG
Sbjct: 1121 VVEALLGAATIEGG 1134


>gi|302687578|ref|XP_003033469.1| hypothetical protein SCHCODRAFT_37756 [Schizophyllum commune H4-8]
 gi|300107163|gb|EFI98566.1| hypothetical protein SCHCODRAFT_37756 [Schizophyllum commune H4-8]
          Length = 1343

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 9/77 (11%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQE-----SYERLEFLGDRILGLLISTLLFNHF 63
            +E+ +GY F  ++LL +ALTH+S    YQE     SY RLEFLGD +L + ++  +F   
Sbjct: 1130 VERMLGYTFERKALLIEALTHAS----YQEPLPTPSYGRLEFLGDAVLDMAVTPYIFASK 1185

Query: 64   DSAKEGELSVRFNSLVS 80
             +   G + +R ++ V+
Sbjct: 1186 KNYSPGHIHLRRSAAVN 1202



 Score = 38.9 bits (89), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 33/124 (26%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVA---------- 88
            +Y+RLE +GD +L  L+S  L+  +    EG L+ + +  VS    ++++          
Sbjct: 973  NYQRLETMGDTVLKYLVSIQLYAEYPLWHEGYLAKQKDHTVSNVRLAKISVRRHIFQWII 1032

Query: 89   RELDL---------------ASFIRVSSDLRKDVCSFMT--SIQADVVESLIAALYLDGG 131
            RE +                 + ++++S+L       +T  S+ ADV+ESLI A Y+ GG
Sbjct: 1033 REKNKPKKKKKKDNNQLSTKGTVLKITSEL------LLTKLSVLADVIESLIGAAYVHGG 1086

Query: 132  IEVA 135
            + + 
Sbjct: 1087 LSLG 1090


>gi|241061224|ref|XP_002408099.1| dicer-1, putative [Ixodes scapularis]
 gi|215492368|gb|EEC02009.1| dicer-1, putative [Ixodes scapularis]
          Length = 1348

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            +E+ +GY F +RS L +A+TH+S   +   + Y+RLEFLGD ++  L++  L+       
Sbjct: 1069 VERALGYTFVDRSFLLQAVTHASYYRNRLTDCYQRLEFLGDAVIDYLVTRYLYELPRKFN 1128

Query: 68   EGELSVRFNSLVS 80
             G+L+   +SLV+
Sbjct: 1129 PGQLTDLRSSLVN 1141


>gi|324500060|gb|ADY40039.1| Endoribonuclease dcr-1 [Ascaris suum]
          Length = 1970

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 1/78 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
             ++S LE  I Y F +R+ L +A TH+S   +     Y+RLEFLGD +L  +I+  LF H
Sbjct: 1701 FQFSKLEDSICYRFKDRAYLLQAFTHASYYKNRITGCYQRLEFLGDAVLDYVITRFLFQH 1760

Query: 63   FDSAKEGELSVRFNSLVS 80
                  G L+   ++LV+
Sbjct: 1761 PRQYSPGVLTDLRSALVN 1778


>gi|261195592|ref|XP_002624200.1| dicer-like protein 2 [Ajellomyces dermatitidis SLH14081]
 gi|239588072|gb|EEQ70715.1| dicer-like protein 2 [Ajellomyces dermatitidis SLH14081]
          Length = 1509

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 6/65 (9%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN---- 61
            +  +E  +GY+F  +  L +A TH S   S   SY+RLEF+GD IL  +I   LFN    
Sbjct: 1177 FQEIESLLGYSFNKKVFLVQAFTHPSNPGSTTSSYQRLEFVGDAILDHIIVHHLFNSSRN 1236

Query: 62   --HFD 64
              HFD
Sbjct: 1237 LPHFD 1241



 Score = 35.8 bits (81), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 58/134 (43%), Gaps = 20/134 (14%)

Query: 16   AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
            AF + SL+  A++ S    +   +Y+R+EFLGD IL    +  L        EG LS   
Sbjct: 1003 AFTDLSLVVTAISASVAREA--TNYQRIEFLGDSILKFHTTLQLSAANLVWHEGLLSRAK 1060

Query: 76   NSLVSAETCSQVARELDLASFIRV------------------SSDLRKDVCSFMTSIQAD 117
            +++VS +  S  A E  L  FI V                  S +         T   AD
Sbjct: 1061 DNVVSNKRLSYAAVETGLDKFILVDVFTGAKWRPRYNKVHLESEEQGIPQREMTTKTLAD 1120

Query: 118  VVESLIAALYLDGG 131
            VVE+L+ A  ++GG
Sbjct: 1121 VVEALLGAATIEGG 1134


>gi|317150438|ref|XP_001824024.2| dicer-like protein 1 [Aspergillus oryzae RIB40]
 gi|158706453|sp|Q2U6C4|DCL1_ASPOR RecName: Full=Dicer-like protein 1; Includes: RecName:
            Full=Endoribonuclease dcl1; Includes: RecName:
            Full=ATP-dependent helicase dcl1
          Length = 1523

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66
            +E+++GY F    LL  A TH S   ++ +   Y+RLEFLGD +L ++    LF  +   
Sbjct: 1244 VEEKLGYRFKYPRLLHSAFTHPSYPSTWAKVPCYQRLEFLGDSLLDMVCVDDLFYRYPDK 1303

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQADVVESLIAA 125
                L+    ++VS +    +A +L L + +R  S+ L+  +  +   IQA   ES  A 
Sbjct: 1304 DPQWLTEHKMAMVSNKFLGALAVKLGLHTHLRHFSNPLQSQITHYAEEIQAAENESQGAV 1363

Query: 126  LY 127
             Y
Sbjct: 1364 DY 1365


>gi|325093360|gb|EGC46670.1| dicer-like protein [Ajellomyces capsulatus H88]
          Length = 1436

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 6/65 (9%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN---- 61
            +  +E  +GY F  +  L +A TH S   S   SY+RLEF+GD IL  +I   LFN    
Sbjct: 1097 FQEVESLVGYVFNKKVFLVQAFTHPSNPGSKTSSYQRLEFVGDAILDHIIVYHLFNAPRT 1156

Query: 62   --HFD 64
              HFD
Sbjct: 1157 LPHFD 1161



 Score = 42.0 bits (97), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 60/134 (44%), Gaps = 20/134 (14%)

Query: 16   AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
            AF + SL+  A++ S+   +   +Y+R+EFLGD IL    +  L        EG LS   
Sbjct: 923  AFTDLSLVITAISASAAREA--TNYQRIEFLGDSILKFQTTLQLTAANPIWHEGLLSRAK 980

Query: 76   NSLVSAETCSQVARELDLASFIRVS--------SDLRKDVCS----------FMTSIQAD 117
            +++VS +  S  A E  L  FI +             KD               T   AD
Sbjct: 981  DTVVSNKRLSYAAIETGLDKFILLDVFTGAKWRPPCNKDHLESEEQGVPQREMSTKTLAD 1040

Query: 118  VVESLIAALYLDGG 131
            VVE+L+AA  LDGG
Sbjct: 1041 VVEALLAAATLDGG 1054


>gi|321458470|gb|EFX69538.1| hypothetical protein DAPPUDRAFT_329028 [Daphnia pulex]
          Length = 1597

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 111/254 (43%), Gaps = 38/254 (14%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES-YERLEFLGDRILGLLISTLLFN-HF 63
            + TLE+ + + F NR  L +A +H+S  H+   S Y+RLEFLGD +   LI+  L++   
Sbjct: 1348 FETLERSLNFRFGNRFYLLQAFSHASYHHNRMTSCYQRLEFLGDAVFDYLITKYLYDCRL 1407

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDL---------RKDVCSFMTS 113
                 G LS   ++LV+  T + +A       +++ +  D+         ++++C   T 
Sbjct: 1408 FQLTPGALSDMRSALVNNVTFAVLAVRNGFHRYLKHLVPDVHQAIDRFVQQQEMCDHATP 1467

Query: 114  ---------------------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
                                 +  D+ ESL+ A++LD  + +   +   Y   R      
Sbjct: 1468 DEFFLIGTHDDPMAEAVEVPKVLGDIFESLVGAVFLDSDMSLDAVWRVFYPLIRQEIEAC 1527

Query: 153  FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI-SGLAPAQGMDCSKRAA 211
             R   K+ ++   + K+    ++K T  + PD   R  + VE+ +     +G+  + R A
Sbjct: 1528 TRVVPKSPIRT-IYEKYPGKVQFK-TLENLPDG--RICIAVEVLNNGRLYKGVGKNSRIA 1583

Query: 212  EQVAAAEVLKREGI 225
            +  AA   L + GI
Sbjct: 1584 KNTAAKYALSQLGI 1597


>gi|297804712|ref|XP_002870240.1| ribonuclease III family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316076|gb|EFH46499.1| ribonuclease III family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 214

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 17/143 (11%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           L   +LEK + Y F ++ LL +A T +S      +SYE LE LGD IL + I       +
Sbjct: 28  LEIESLEKILNYKFKDKRLLVQAFTDASYVDDKCDSYEILELLGDSILNMSIIDEFIKLY 87

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-LRKDVCSFMTSIQ------- 115
                G L+      V  E  ++VA +  L  ++R     L + +  F+ +++       
Sbjct: 88  PKESPGPLTKLRAVNVDTEKLARVAVKHQLYRYLRHKKPLLEEQILEFVEAMEKYPLHSN 147

Query: 116 ---------ADVVESLIAALYLD 129
                    AD+VES I AL+ D
Sbjct: 148 GLLKVPKVLADIVESTIGALFRD 170


>gi|145612491|ref|XP_001412113.1| hypothetical protein MGG_07167 [Magnaporthe oryzae 70-15]
 gi|145019646|gb|EDK03874.1| hypothetical protein MGG_07167 [Magnaporthe oryzae 70-15]
          Length = 819

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 39/60 (65%), Gaps = 2/60 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE+ +GY+F  +SLL +A+TH+S  I  S   S ERLEFLGD +L  ++   LF+  D A
Sbjct: 505 LEELLGYSFNKKSLLIEAITHASYNIPGSAGSSLERLEFLGDSVLDFVVVARLFSVKDPA 564



 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 13/110 (11%)

Query: 39  SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
           +YER+EFLGD +L L  +     +     EG LS+  + LVS     + A  L L  FI 
Sbjct: 356 NYERVEFLGDAVLKLGAAVTCATNNLHFPEGYLSLLKDRLVSNSRLCKAATALGLDQFII 415

Query: 99  VSSDLRKDVCSFMTSIQ-------------ADVVESLIAALYLDGGIEVA 135
                 K   + +T+ +             ADV E+LI A Y++GG+  A
Sbjct: 416 TRQYSLKQWRNMLTAPEPPTNTRKMSSKTLADVTEALIGAAYIEGGMSKA 465


>gi|89114028|gb|ABD61605.1| Dicer-1 [Drosophila melanogaster]
          Length = 2043

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 1/103 (0%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1936 FEKFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107
                G L+   ++LV+    + +A       F R  S    DV
Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDV 2038


>gi|109390419|gb|ABG33778.1| double-strand-specific Pac1 ribonuclease [Schizosaccharomyces
           pombe]
          Length = 363

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 45/101 (44%)

Query: 41  ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
           ERLEFLGD    L  + ++F+ F    E  LS      V  E+  + AR       + +S
Sbjct: 172 ERLEFLGDSFFNLFTTRIIFSKFPQMDEESLSKLRAKFVGNESADKFARLYGFDKTLVLS 231

Query: 101 SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141
               KD       + AD  E+ + AL LDG  E A  +V +
Sbjct: 232 YSAEKDQLRKSQKVIADTFEAYLGALILDGQEETAFQWVSR 272


>gi|154282055|ref|XP_001541840.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150412019|gb|EDN07407.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 1437

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 6/65 (9%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN---- 61
            +  +E  +GY F  +  L +A TH S   S   SY+RLEF+GD IL  +I   LFN    
Sbjct: 1097 FQEVESLVGYVFNKKVFLVQAFTHPSNPGSKTSSYQRLEFVGDAILDHIIVHHLFNAPRA 1156

Query: 62   --HFD 64
              HFD
Sbjct: 1157 LPHFD 1161



 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 62/139 (44%), Gaps = 30/139 (21%)

Query: 16   AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGL-----LISTLLFNHFDSAKEGE 70
            AF + SL+  A++ S    +   +Y+R+EFLGD IL       L +T L  H     EG 
Sbjct: 923  AFTDLSLVITAISASVAREA--TNYQRIEFLGDSILKFQTTLQLTATNLIWH-----EGL 975

Query: 71   LSVRFNSLVSAETCSQVARELDLASFIRVS--------SDLRKDVCS----------FMT 112
            LS   +++VS +  S  A E  L  FI +             KD               T
Sbjct: 976  LSRAKDTVVSNKRLSYAAIEAGLDKFILLDVFTGAKWRPPYNKDHLESEEQGVAQREMST 1035

Query: 113  SIQADVVESLIAALYLDGG 131
               ADVVE+L+AA  LDGG
Sbjct: 1036 KTLADVVEALLAAATLDGG 1054


>gi|89114044|gb|ABD61613.1| Dicer-1 [Drosophila simulans]
          Length = 2043

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 1/103 (0%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107
                G L+   ++LV+    + +A       F R  S    DV
Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDV 2038


>gi|238503379|ref|XP_002382923.1| nucleolar RNAse III, putative [Aspergillus flavus NRRL3357]
 gi|83771529|dbj|BAE61661.1| unnamed protein product [Aspergillus oryzae]
 gi|220691733|gb|EED48081.1| nucleolar RNAse III, putative [Aspergillus flavus NRRL3357]
          Length = 234

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 5/126 (3%)

Query: 22  LLEKAL-THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
           +LE+A+ TH  +S+  +++Y+RLE LGD  + L+ + L++  F     G +S     LV 
Sbjct: 4   VLERAVFTHPGVSNDTEKTYDRLEILGDAYIELIATKLIWKRFREIPSGRISQIRELLVK 63

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD---GGIEVAGT 137
            ET ++ A    L     V  D  +    + T  +AD+ E+ +AA  +     G  V   
Sbjct: 64  NETLAEYAAGYGLDRKAAVPQDYLRQSKRW-TKTRADIFEAYVAAAIISHPVDGYRVVEN 122

Query: 138 FVDKYW 143
           ++ + W
Sbjct: 123 WLTQLW 128


>gi|156845983|ref|XP_001645880.1| hypothetical protein Kpol_1045p6 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156116550|gb|EDO18022.1| hypothetical protein Kpol_1045p6 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 478

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 3/92 (3%)

Query: 41  ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
           ERLEFLGD +L  +++ +++N F +  EG+LS    +LVS E         +    ++ +
Sbjct: 226 ERLEFLGDSVLNTIMTMIIYNKFPTFTEGQLSKLRMNLVSNERIKSWTYLYNFDKKLKTN 285

Query: 101 SDLRKDVCSFMTSIQ---ADVVESLIAALYLD 129
            DL  D   F    Q   ADV E+ I  L  D
Sbjct: 286 FDLGNDKSHFQNGKQKLYADVFEAYIGGLIED 317


>gi|89114038|gb|ABD61610.1| Dicer-1 [Drosophila simulans]
          Length = 2043

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 1/103 (0%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107
                G L+   ++LV+    + +A       F R  S    DV
Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDV 2038


>gi|89114030|gb|ABD61606.1| Dicer-1 [Drosophila melanogaster]
          Length = 2043

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 1/103 (0%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107
                G L+   ++LV+    + +A       F R  S    DV
Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDV 2038


>gi|89114048|gb|ABD61615.1| Dicer-1 [Drosophila simulans]
          Length = 2043

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 1/103 (0%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107
                G L+   ++LV+    + +A       F R  S    DV
Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDV 2038


>gi|89114042|gb|ABD61612.1| Dicer-1 [Drosophila simulans]
          Length = 2043

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 1/103 (0%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107
                G L+   ++LV+    + +A       F R  S    DV
Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDV 2038


>gi|225563402|gb|EEH11681.1| dicer-like protein [Ajellomyces capsulatus G186AR]
          Length = 1436

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 6/65 (9%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN---- 61
            +  +E  +GY F  +  L +A TH S   S   SY+RLEF+GD IL  +I   LFN    
Sbjct: 1097 FQEVESLVGYVFNKKVFLVQAFTHPSNPGSKTSSYQRLEFVGDAILDHIIVYHLFNAPRT 1156

Query: 62   --HFD 64
              HFD
Sbjct: 1157 FPHFD 1161



 Score = 40.8 bits (94), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 60/134 (44%), Gaps = 20/134 (14%)

Query: 16   AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
            AF + SL+  A++ S    +   +Y+R+EFLGD IL    +  L        EG LS   
Sbjct: 923  AFTDLSLVITAISASVAREA--TNYQRIEFLGDSILKFQTTLQLTAANPIWHEGLLSRAK 980

Query: 76   NSLVSAETCSQVARELDLASFIRVS----------------SDLRKDVCS--FMTSIQAD 117
            +++VS +  S  A E  L  FI +                     +DV      T   AD
Sbjct: 981  DTVVSNKRLSYAAIETGLDKFILLDVFTGAKWRPPCNKDHLESEEQDVPQREMSTKTLAD 1040

Query: 118  VVESLIAALYLDGG 131
            VVE+L+AA  LDGG
Sbjct: 1041 VVEALLAAATLDGG 1054


>gi|89114022|gb|ABD61602.1| Dicer-1 [Drosophila melanogaster]
          Length = 2043

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 1/103 (0%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107
                G L+   ++LV+    + +A       F R  S    DV
Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDV 2038


>gi|89114050|gb|ABD61616.1| Dicer-1 [Drosophila simulans]
          Length = 2043

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 1/103 (0%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107
                G L+   ++LV+    + +A       F R  S    DV
Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDV 2038


>gi|89114036|gb|ABD61609.1| Dicer-1 [Drosophila simulans]
          Length = 2043

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 1/103 (0%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107
                G L+   ++LV+    + +A       F R  S    DV
Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDV 2038


>gi|195996287|ref|XP_002108012.1| hypothetical protein TRIADDRAFT_52058 [Trichoplax adhaerens]
 gi|190588788|gb|EDV28810.1| hypothetical protein TRIADDRAFT_52058 [Trichoplax adhaerens]
          Length = 915

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 67/166 (40%), Gaps = 47/166 (28%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S + +   Y F N   L  A THSS++    E+Y+RLE+LGD IL  L+   ++      
Sbjct: 652 SCILRNTDYQFNNFYWLRIAFTHSSVA---SENYQRLEYLGDAILEYLLIEFVYCRKPYF 708

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ----------- 115
             G++S   + +   +T S +A      + IR  S L+ D+   M SIQ           
Sbjct: 709 GPGKISHFKSVMTRNQTFSLIAIAFQFYTHIRCHSKLKLDI---MDSIQNFKEILLDNHQ 765

Query: 116 ------------------------------ADVVESLIAALYLDGG 131
                                         ADV E+ IAA+YLD G
Sbjct: 766 DDHQPDIGHFANLAYQLYTSNRYQKLPKVCADVFEAFIAAIYLDCG 811


>gi|89114032|gb|ABD61607.1| Dicer-1 [Drosophila melanogaster]
          Length = 2043

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 1/103 (0%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107
                G L+   ++LV+    + +A       F R  S    DV
Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDV 2038


>gi|225554674|gb|EEH02970.1| RNase3 domain-containing protein [Ajellomyces capsulatus G186AR]
          Length = 380

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 4/110 (3%)

Query: 37  QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96
           +++YER+E LGD  + ++ + L+++ F     G LS     LV  ET ++      L   
Sbjct: 159 EKNYERMELLGDAYIEIIATRLVWDTFPRLPAGRLSQIRELLVKNETLAEYTSLYGLDQK 218

Query: 97  IRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG---GIEVAGTFVDKYW 143
           ++V  ++R D     T I+ D+ E+ +AA+ L     G+++A  ++ + W
Sbjct: 219 LQVPPNIR-DQAKTWTKIKGDLFEAYVAAVILSNREYGVQLAEDWLTQLW 267


>gi|89114046|gb|ABD61614.1| Dicer-1 [Drosophila simulans]
          Length = 2043

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 1/103 (0%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107
                G L+   ++LV+    + +A       F R  S    DV
Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDV 2038


>gi|89114024|gb|ABD61603.1| Dicer-1 [Drosophila melanogaster]
          Length = 2043

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 1/103 (0%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107
                G L+   ++LV+    + +A       F R  S    DV
Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDV 2038


>gi|89114040|gb|ABD61611.1| Dicer-1 [Drosophila simulans]
          Length = 2043

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 1/103 (0%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107
                G L+   ++LV+    + +A       F R  S    DV
Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDV 2038


>gi|89114034|gb|ABD61608.1| Dicer-1 [Drosophila melanogaster]
          Length = 2043

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 1/103 (0%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107
                G L+   ++LV+    + +A       F R  S    DV
Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDV 2038


>gi|89114020|gb|ABD61601.1| Dicer-1 [Drosophila melanogaster]
          Length = 2043

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 1/103 (0%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107
                G L+   ++LV+    + +A       F R  S    DV
Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDV 2038


>gi|321454554|gb|EFX65720.1| hypothetical protein DAPPUDRAFT_117031 [Daphnia pulex]
          Length = 322

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 20/140 (14%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLISTLL 59
           ++   + L ++IGY F N++LL +A+THS+ + +   S   E  E LGD  LG   +   
Sbjct: 66  TSFSLTALPEKIGYKFRNKNLLGRAMTHSTANQTKCPSQDGENFEVLGDVALGNFFAMAR 125

Query: 60  FNHF----------DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS 109
            NH            +  +G+LS+    L SA TC+    +L     I  +   R +   
Sbjct: 126 VNHTVVLELLLDLNPNYNQGQLSL----LKSAITCNDTFADL---VIIPSAEGYRANEID 178

Query: 110 FMTSIQADVVESLIAALYLD 129
           +   I AD  E+LI AL +D
Sbjct: 179 Y-PEIYADAFEALIGALRID 197


>gi|68477460|ref|XP_717201.1| probable ribonuclease III [Candida albicans SC5314]
 gi|46438903|gb|EAK98227.1| probable ribonuclease III [Candida albicans SC5314]
          Length = 611

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 60/124 (48%), Gaps = 14/124 (11%)

Query: 22  LLEKALTHSSI---------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           L E+   H S          +H      ERLEF GD IL  L + ++F  F  + EG+LS
Sbjct: 247 LFERVFIHKSTVNNKQYLEANHLLHSHNERLEFYGDSILNNLATLIIFKEFPDSTEGDLS 306

Query: 73  VRFNSLVSAETCSQVARE--LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
              + LVS +T  ++A +   D     R+S D+ K   +    I ADV E+ I AL ++ 
Sbjct: 307 KIRSKLVSNKTLIKIAFQYGFDKKLRSRISDDVLK---TGDKKIFADVFEAYIGALAMER 363

Query: 131 GIEV 134
           G ++
Sbjct: 364 GFDL 367


>gi|195109134|ref|XP_001999145.1| GI24348 [Drosophila mojavensis]
 gi|193915739|gb|EDW14606.1| GI24348 [Drosophila mojavensis]
          Length = 2256

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 1/113 (0%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E  +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 2000 FEEFEASLGYTFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2059

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
                G L+   ++LV+    + +A       + R  S    DV      IQ +
Sbjct: 2060 QHSPGALTDLRSALVNNTIFASLAVRHGFHKYFRHLSPGLNDVIDRFVRIQQE 2112


>gi|328770756|gb|EGF80797.1| hypothetical protein BATDEDRAFT_24696 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 1641

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            +E++IGY F +++LL +ALTHS  +      ++RLEFLGD +L  L    L+        
Sbjct: 1292 IEEQIGYTFRDKTLLWEALTHSG-TGKLGSMFQRLEFLGDAVLSYLAMQHLYKITPPLNP 1350

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIR 98
            G LS     LV  +  + V+ ++ L  +IR
Sbjct: 1351 GGLSKLRAELVCNQFLACVSIQIGLVKYIR 1380



 Score = 37.0 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 12/134 (8%)

Query: 18   ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
            A   LL+ A T S+ +  Y  SYERLE LGD  L +  S  LF       EG ++ +   
Sbjct: 1116 ATPKLLQIATTSSASNMGY--SYERLETLGDSFLKIHQSLHLFCRNPFKNEGWMTQQRIK 1173

Query: 78   LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ----------ADVVESLIAALY 127
            +   +   Q A +  L  FI      +++      +I+          A  +E++I A  
Sbjct: 1174 IEKNQVLHQKALDAGLQHFILTKPLTKRNWVPPAKNIRLNQEISNKTLAGSIEAVIGACV 1233

Query: 128  LDGGIEVAGTFVDK 141
             +GG+E A   V +
Sbjct: 1234 EEGGVEQAALAVSR 1247


>gi|195037032|ref|XP_001989969.1| GH18503 [Drosophila grimshawi]
 gi|193894165|gb|EDV93031.1| GH18503 [Drosophila grimshawi]
          Length = 2254

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 1/113 (0%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E  +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1998 FEEFEASLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2057

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
                G L+   ++LV+    + +A       + R  S    DV      IQ +
Sbjct: 2058 QHSPGALTDLRSALVNNTIFASLAVRHGFHKYFRHLSPGLNDVIDRFVRIQQE 2110



 Score = 36.2 bits (82), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 13   IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            +G+   + S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+LS
Sbjct: 1714 VGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYMTYENVHEGKLS 1771


>gi|296434189|tpg|DAA12515.1| TPA_exp: Dicer 1 protein [Naumovia castellii]
          Length = 610

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 97/217 (44%), Gaps = 19/217 (8%)

Query: 16  AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
           AF +RSL    +  + +  +   S ERLEFLGD  LG L++ +++  +  A EG LS   
Sbjct: 124 AFIHRSLPNMNVKLTELQKTVM-SNERLEFLGDSWLGALVAYIIYKKYPYANEGALSKMK 182

Query: 76  NSLVSAETCSQVARELD----LASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-- 129
            ++V+     ++  +L     L   I  SS   KD    +T   AD VE+ I AL +D  
Sbjct: 183 EAIVNNNNLEKICEKLGFKERLKENIPRSSMKIKD---RLTKNYADCVEAYIGALVIDRF 239

Query: 130 -GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY-----KVTFRSGP 183
                    ++++  ++  ++ G      K  L + A  + G   ++     K++++   
Sbjct: 240 STEFNDVALWLEELSEEHFIELGPMM--VKEPLNKNAKGELGAFLQFNNIGAKISYKRLN 297

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           D  P F V V +       G   + R AEQ AA E L
Sbjct: 298 DKSP-FKVEVRLGNNLLGIGDGSNVREAEQRAAMEAL 333


>gi|320035561|gb|EFW17502.1| RNA helicase/RNAse III [Coccidioides posadasii str. Silveira]
          Length = 1448

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 20/134 (14%)

Query: 16   AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
             F+N SL+  A++ S+   +   +Y+RLEFLGD +L L  S  L        EG L++R 
Sbjct: 968  GFSNLSLVLTAISSSAAREA--SNYQRLEFLGDSLLKLHTSIQLAADHPLWPEGRLTMRK 1025

Query: 76   NSLVSAETCSQVARELDLASFIRV------------------SSDLRKDVCSFMTSIQAD 117
             ++VS    +  A +  L  FI                    + ++ +      T + AD
Sbjct: 1026 GNVVSNGYLANAALQTGLDKFILTKPFTGAKWRPSYNTDHINTGNMTEPTREMSTKVLAD 1085

Query: 118  VVESLIAALYLDGG 131
            VVE+LI A  +DGG
Sbjct: 1086 VVEALIGAANIDGG 1099



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 17/96 (17%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL------F 60
            S +E  +GY F  + LL  A+TH S S     SY+RLEF+GD IL +++   L      F
Sbjct: 1142 SEIEGLVGYTFKKKPLLLAAVTHPS-SKGSGHSYQRLEFVGDSILDIIVVQELFESPRGF 1200

Query: 61   NHFDSAKEGELSVRFNSLVSAE----TCSQVARELD 92
            +HFD      + +   +LV+A+     C    RE D
Sbjct: 1201 HHFD------MHLMRTALVNADFLAFLCMNAYREED 1230


>gi|68477301|ref|XP_717277.1| probable ribonuclease III [Candida albicans SC5314]
 gi|46438981|gb|EAK98304.1| probable ribonuclease III [Candida albicans SC5314]
          Length = 611

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 60/124 (48%), Gaps = 14/124 (11%)

Query: 22  LLEKALTHSSI---------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           L E+   H S          +H      ERLEF GD IL  L + ++F  F  + EG+LS
Sbjct: 247 LFERVFIHKSTVNNKQYLEANHLLHSHNERLEFYGDSILNNLATLIIFKEFPDSTEGDLS 306

Query: 73  VRFNSLVSAETCSQVARE--LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
              + LVS +T  ++A +   D     R+S D+ K   +    I ADV E+ I AL ++ 
Sbjct: 307 KIRSKLVSNKTLIKIAFQYGFDKKLRSRISDDVLK---TGDKKIFADVFEAYIGALAMER 363

Query: 131 GIEV 134
           G ++
Sbjct: 364 GFDL 367


>gi|189199432|ref|XP_001936053.1| conserved hypothetical protein [Pyrenophora tritici-repentis
            Pt-1C-BFP]
 gi|187983152|gb|EDU48640.1| conserved hypothetical protein [Pyrenophora tritici-repentis
            Pt-1C-BFP]
          Length = 1439

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 1/55 (1%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            +EK +GY F N++LL +ALTH +    +   SYER EFLGD +L  ++S  LF H
Sbjct: 1126 VEKLLGYKFTNKALLLEALTHVTFRGLNTNCSYERHEFLGDAVLDYIVSRRLFAH 1180


>gi|195443910|ref|XP_002069632.1| GK11626 [Drosophila willistoni]
 gi|194165717|gb|EDW80618.1| GK11626 [Drosophila willistoni]
          Length = 2281

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 1/113 (0%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E  +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 2025 FEEFEAILGYRFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2084

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
                G L+   ++LV+    + +A       F R  S    DV      IQ +
Sbjct: 2085 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQE 2137


>gi|171689324|ref|XP_001909602.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944624|emb|CAP70735.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1406

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 1/54 (1%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFN 61
            LEK IGY F  +SLL +A+TH S +    + S +RLEFLGD IL  L+   LF+
Sbjct: 1080 LEKLIGYTFKKKSLLIEAMTHPSFNVQDTRASLDRLEFLGDAILDYLVVESLFS 1133


>gi|289614471|emb|CBI58755.1| unnamed protein product [Sordaria macrospora]
          Length = 1365

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 32/49 (65%), Gaps = 2/49 (4%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLI 55
            LEK +GYAF  +SLL +A+TH S          YERLEFLGD IL +++
Sbjct: 1001 LEKAMGYAFTKKSLLIEAMTHPSCPGLGDNDSCYERLEFLGDAILDVIV 1049



 Score = 38.5 bits (88), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 67/159 (42%), Gaps = 30/159 (18%)

Query: 1   MSALRYSTLEKRIG-YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILG----LLI 55
           MS +    +  R+G     N  L+  ALT  SI      +YERLEFLGD IL     L  
Sbjct: 804 MSLVAADLMYNRLGCLELDNLLLVTTALT--SIGSRAPTNYERLEFLGDTILKFCACLTA 861

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM---- 111
           S L  NH     E  LS   +SLV+     + + +  L  +I  S   +K    F+    
Sbjct: 862 SALFPNH----HERLLSQWKDSLVNNVRLCRASIDFGLDEYIIHSMASKKWRPKFVENYL 917

Query: 112 ---------------TSIQADVVESLIAALYLDGGIEVA 135
                          + + ADV+ESLI A Y+ G +  A
Sbjct: 918 DDSKSPKSAETREMSSKMVADVIESLIGATYMCGDMSKA 956


>gi|242763899|ref|XP_002340666.1| RNA helicase/RNAse III, putative [Talaromyces stipitatus ATCC 10500]
 gi|218723862|gb|EED23279.1| RNA helicase/RNAse III, putative [Talaromyces stipitatus ATCC 10500]
          Length = 1494

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 98/245 (40%), Gaps = 36/245 (14%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
            +E ++GY F    LL  A TH S   ++     Y+RLEFLGD +L ++    L+  F   
Sbjct: 1209 VEMKLGYCFQYPKLLRSAFTHPSYPSAWSTVPCYQRLEFLGDSLLDMVCVEDLYERFPDR 1268

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ---------- 115
                L+    ++VS +    +A  L L + ++  S+ L+  +   +   Q          
Sbjct: 1269 DPQWLTEHKMAMVSNKFLGSLAVRLSLHTHLQYFSNPLQAQIARAVQDSQLAYDSHQTVD 1328

Query: 116  ------------ADVVESLIAALYLDGGIEVA------GTFVDKYWKQRALKSGKFRRDA 157
                        +D+VE+ + A+++D G +           +  Y++  AL      +  
Sbjct: 1329 FWLHTDDPPKCLSDMVEAYLGAIFVDSGFDFGVIESFYAKHIKPYFEDMALYDTFANKHP 1388

Query: 158  KTELQEWAHAKFGVTPEYKVTFRSGPDHD---PRFTVVVEISGLAPAQGMDCSKRAAEQV 214
             T L       FG   +Y +     P  D   P     V +  +  AQG   S R A ++
Sbjct: 1389 TTFLHRKLTDDFGCI-QYTLRAAEIPSVDGAPPVVLAAVLVHDVVLAQGTASSGRYA-KI 1446

Query: 215  AAAEV 219
             A+EV
Sbjct: 1447 KASEV 1451


>gi|189190408|ref|XP_001931543.1| double-strand-specific ribonuclease Pac1 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187973149|gb|EDU40648.1| double-strand-specific ribonuclease Pac1 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 362

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 5/136 (3%)

Query: 17  FANRS-LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
           F +RS + + ++  S++       YERLE LGD  + L+ S  L+N F      EL +  
Sbjct: 132 FTHRSAIFDPSIPGSALGQDLSLDYERLELLGDAYIELIASRALYNRFPHVDVPELCMWR 191

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL---DGGI 132
             LV   T  + +        ++  +   K    +   + AD+VE+ +AA+ L   D G 
Sbjct: 192 ERLVENSTLGKFSHAYGFPDRLKHRAMWDKTSKQYQKVV-ADIVEAYVAAVVLSDPDNGF 250

Query: 133 EVAGTFVDKYWKQRAL 148
           E A  ++ + W  + L
Sbjct: 251 ETAEAWLTELWAPQLL 266


>gi|212529276|ref|XP_002144795.1| RNA helicase/RNAse III, putative [Penicillium marneffei ATCC 18224]
 gi|210074193|gb|EEA28280.1| RNA helicase/RNAse III, putative [Penicillium marneffei ATCC 18224]
          Length = 1497

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 75/165 (45%), Gaps = 27/165 (16%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
            + ++K++GY F    LL  A TH S   ++     Y+RLEFLGD +L ++    L+  F 
Sbjct: 1212 NQIDKKLGYRFKYPRLLRSAFTHPSYPTAWSIVPCYQRLEFLGDSLLDMVCIENLYERFP 1271

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ-------- 115
                  L+    ++VS +    +A  LDL + ++  S+ L+  +   +   Q        
Sbjct: 1272 DRDPQWLTEHKMAMVSNKFLGSLAVRLDLHTHLQYFSNPLQGRIAQAVEDAQLAYESHQS 1331

Query: 116  --------------ADVVESLIAALYLDGGIE--VAGTFVDKYWK 144
                          +D+VE+ + A+++D G +  V  +F  K+ K
Sbjct: 1332 VDFWIMIEDPPKCLSDMVEAYLGAIFVDSGFDFGVIESFYAKHIK 1376



 Score = 39.3 bits (90), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 59/149 (39%), Gaps = 26/149 (17%)

Query: 9    LEKRIGYAFA-----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
            LE ++GYA       + +  E  L          ++YERLEFLGD  L +  S  LF   
Sbjct: 1012 LEIQLGYALEAVTKDSDNTEEHRLEQIQFQRGMGKNYERLEFLGDCFLKMATSISLFVGS 1071

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK----------------DV 107
             + +E +L V   +L+        A+E  +  +IR     R+                D 
Sbjct: 1072 PNDQEFDLHVNRMTLICNRNLFNTAKERKIYEYIRSKGFSRRNWYPEGMKLLRGKANEDK 1131

Query: 108  CSFMT-----SIQADVVESLIAALYLDGG 131
             S  T        ADV E+LI A  L GG
Sbjct: 1132 ASTHTHGLGEKTIADVCEALIGASLLSGG 1160


>gi|325185579|emb|CCA20062.1| Dicerlike 1 (DCL1) putative [Albugo laibachii Nc14]
          Length = 1609

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 72/173 (41%), Gaps = 50/173 (28%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISH-----------SYQESYERLEFLGDRILGLLIST 57
            LE+R+ Y F N+ LL +A+TH S+             S+Q +YERLE+LGD ++  L  +
Sbjct: 1383 LEQRLCYRFRNKLLLLEAITHPSVRRLEIVMDNEKRVSWQGNYERLEYLGDALIEYLTVS 1442

Query: 58   LLFNHFDSAKEGELSVRFNSLVSAETCSQVA--------------RELDLASFIRVSSDL 103
              F   D+   G LS    + VS +   + A               + D     ++ +  
Sbjct: 1443 YAFLAHDTWLPGSLSNWKAATVSNDALGKTAIACFGVDEAICLGHVQFDREIMNKIKTIP 1502

Query: 104  RKDVCSF-------------------------MTSIQADVVESLIAALYLDGG 131
            RK    +                         +  I ADV+E+L+AA++LD G
Sbjct: 1503 RKYAVDYNVDTIQPGHSRNSTTKSNCTTNLLALPKILADVMEALVAAVFLDSG 1555


>gi|299748332|ref|XP_001837616.2| double-stranded RNA binding domain-containing protein-containing
           protein [Coprinopsis cinerea okayama7#130]
 gi|298407924|gb|EAU84240.2| double-stranded RNA binding domain-containing protein-containing
           protein [Coprinopsis cinerea okayama7#130]
          Length = 435

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 63/125 (50%), Gaps = 14/125 (11%)

Query: 17  FANRSLLEKALTHSSI----SHSYQE-------SYERLEFLGDRILGLLISTLLFNHFDS 65
             NR++  +  TH S     +H +++         ER E LGD +LGL+++ L+F+ F  
Sbjct: 94  ITNRNIELQVFTHRSYHARPTHVFEDHINDLSPDNERYEHLGDTVLGLVVTNLMFDMFPG 153

Query: 66  AKEGELSVRFNSLVSAE-TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            + G  S +  SLV    T ++++++  L   +R+    +       T++QADV E+ + 
Sbjct: 154 LRVGP-STKIRSLVVGNSTLAEISKKYRLPDRLRLHQ-AQAITLRASTNVQADVFEAFVG 211

Query: 125 ALYLD 129
            L+ D
Sbjct: 212 GLFKD 216


>gi|221125080|ref|XP_002155102.1| PREDICTED: similar to dicer 1 [Hydra magnipapillata]
          Length = 798

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/111 (31%), Positives = 60/111 (54%), Gaps = 2/111 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTH-SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            E  I Y F+N+S L +A TH S +S+S    Y++ EFLGD IL  LI+  + ++  +  
Sbjct: 604 FEDLISYKFSNKSHLIQAFTHLSYLSNSVTGCYQQYEFLGDAILDFLITLHIQSNTQNLS 663

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSS-DLRKDVCSFMTSIQAD 117
            G+L+   +++V+  T   +A +     +I  SS +L     SF+  ++ D
Sbjct: 664 PGQLTYFRSAVVNNNTFGLLAIKHSFYKYIYSSSNELFSSYNSFIEIVKDD 714



 Score = 37.7 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 31/57 (54%)

Query: 41  ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
           ERLE LGD  L   +S  +F    S  EG+L++R  + +S E   +V + + + + I
Sbjct: 423 ERLEILGDSFLKQAVSIFVFFQNPSFHEGKLTIRRKNCISNENLCKVGKSVGIQNII 479


>gi|89114026|gb|ABD61604.1| Dicer-1 [Drosophila melanogaster]
          Length = 2043

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 1/103 (0%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  +I+  L+    
Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYIITRHLYEDPR 1995

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107
                G L+   ++LV+    + +A       F R  S    DV
Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDV 2038


>gi|238499729|ref|XP_002381099.1| dicer-1, putative [Aspergillus flavus NRRL3357]
 gi|220692852|gb|EED49198.1| dicer-1, putative [Aspergillus flavus NRRL3357]
          Length = 605

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 3/122 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66
           +E+++GY F    LL  A TH S   ++ +   Y+RLEFLGD +L ++    LF  +   
Sbjct: 326 VEEKLGYRFKYPRLLHSAFTHPSYPSTWAKVPCYQRLEFLGDSLLDMVCVDDLFYRYPDK 385

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQADVVESLIAA 125
               L+    ++ S +    +A +L L + +R  S+ L+  +  +   IQA   ES  A 
Sbjct: 386 DPQWLTEHKMAMASNKFLGALAVKLGLHTHLRHFSNPLQSQITHYAEEIQAAENESQGAV 445

Query: 126 LY 127
            Y
Sbjct: 446 DY 447



 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 46/118 (38%), Gaps = 22/118 (18%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
           ++YERLEFLGD  L +  S  LF       E +  V    L+  +     A + +L  +I
Sbjct: 157 KNYERLEFLGDCFLKMATSISLFVQNPDDDEFDFHVNRMCLICNKNLFNTALKKELYQYI 216

Query: 98  RV-----------------SSDLRKDVC-----SFMTSIQADVVESLIAALYLDGGIE 133
           R                    D RK V      +      ADV E+LI A  L GG+ 
Sbjct: 217 RSRGFSRHTWYPDGLTLLHGRDHRKKVSAESKHALREKTVADVCEALIGASLLSGGLH 274


>gi|242809985|ref|XP_002485488.1| RNA helicase/RNAse III, putative [Talaromyces stipitatus ATCC 10500]
 gi|218716113|gb|EED15535.1| RNA helicase/RNAse III, putative [Talaromyces stipitatus ATCC 10500]
          Length = 1420

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 60/132 (45%), Gaps = 17/132 (12%)

Query: 17   FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
            F N S +  A++ SS    +   Y+R EFLGD +L L+ S  L        EG LS   +
Sbjct: 954  FENLSHVLTAISASSAQEEH--DYQRYEFLGDSLLKLITSIHLVVKKPLWHEGLLSAEKD 1011

Query: 77   SLVSAETCSQVARELDLASFIRVSS----DLRKDVCS-----------FMTSIQADVVES 121
            ++VS     + A +L L  FI   S      R +  S             T   ADVVE+
Sbjct: 1012 TIVSNGRLHRTALDLGLDKFILTKSFTGRKWRPNYISQFETVTEEKRQMSTKTLADVVEA 1071

Query: 122  LIAALYLDGGIE 133
            L+ A +LDGG E
Sbjct: 1072 LLGAAFLDGGYE 1083



 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 1/73 (1%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            +E+ +GY F   S+L +ALTH   ++    +Y+RLEFLGD +L   +    FNH +    
Sbjct: 1127 MEEILGYKFNKPSILFEALTHPC-ANDGAPTYQRLEFLGDSLLDHFVVQEFFNHPEKISH 1185

Query: 69   GELSVRFNSLVSA 81
             ++ +   ++V+A
Sbjct: 1186 QDMHLMRTAVVNA 1198


>gi|171690380|ref|XP_001910115.1| hypothetical protein [Podospora anserina S mat+]
 gi|170945138|emb|CAP71249.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1568

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 3/110 (2%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66
              KR+GY F    LL  A  H +   S+++  SY+RLEFLGD +L +     LF+ F  A
Sbjct: 1260 FHKRMGYRFQYPRLLRSAFQHPTYPTSWEKLPSYQRLEFLGDALLDMACIDHLFHRFPGA 1319

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-LRKDVCSFMTSIQ 115
                L+    ++VS +    +A  +     ++ SS  ++ ++ S++T I+
Sbjct: 1320 DPQWLTEHKMAMVSNQFLGCLAVYIGFHRSLQHSSPAVQSEIASYVTEIE 1369



 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 48/119 (40%), Gaps = 22/119 (18%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
            +YERLEFLGD  L +  +  ++       E E  V    L+        A E+ L  +IR
Sbjct: 1096 NYERLEFLGDAFLKMATTIAIYTLIPDKDEFEYHVERMVLICNRNLFNNALEVKLEEYIR 1155

Query: 99   VSS-------------------DLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138
              +                   D+RK       SI ADV E++I A YL    + AG F
Sbjct: 1156 SMAFNRRTWYPEGLTLKRGKRKDIRKKHVLADKSI-ADVCEAIIGAAYLTA--QEAGNF 1211


>gi|330944921|ref|XP_003306459.1| hypothetical protein PTT_19601 [Pyrenophora teres f. teres 0-1]
 gi|311316023|gb|EFQ85435.1| hypothetical protein PTT_19601 [Pyrenophora teres f. teres 0-1]
          Length = 1448

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 84/201 (41%), Gaps = 67/201 (33%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            +EK +GY F N++LL +ALTH +    +   SYER EFLGD +L  ++S  L+ H     
Sbjct: 1164 IEKLLGYKFNNKALLLEALTHVTFRGLNTNCSYERHEFLGDAVLDYIVSRKLYAH----- 1218

Query: 68   EGELSVR-------------------FNSLVSAETCSQVARELD-----LASFIRVSSDL 103
            + ELS R                   F + V+ E  ++   E +     L  F+R +S+ 
Sbjct: 1219 KPELSHRKMHGIRTAMVNASFLAYSMFETTVTEELTNKNTLEPEVHQRALWQFLRCTSN- 1277

Query: 104  RKDVCSFMTSIQ---------------------------------ADVVESLIAALYLD- 129
             + V S + + Q                                 +D+VES+I ALY+D 
Sbjct: 1278 -ELVASRIIATQQHAEARNRIATGLKHDSRFPWQALSLTDPPKYLSDIVESVIGALYIDS 1336

Query: 130  -GGIEVAGTFVDKYWKQRALK 149
             G I     FV++      LK
Sbjct: 1337 HGSIATCEEFVNRLGIMSCLK 1357


>gi|296809942|ref|XP_002845309.1| dicer-like protein 1 [Arthroderma otae CBS 113480]
 gi|238842697|gb|EEQ32359.1| dicer-like protein 1 [Arthroderma otae CBS 113480]
          Length = 1521

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 70/165 (42%), Gaps = 28/165 (16%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64
            + +E+++GY F    LL  A  H S    +     Y+RLEFLGD +L +     LF  + 
Sbjct: 1238 NQIEEKLGYRFKYPKLLRSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMACVNHLFTKYP 1297

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDL-ASFIRVSSDLRKDVCSFMTSIQA------- 116
                  L+    ++VS +    +A  L+L    I +S+ L+  +  +   +QA       
Sbjct: 1298 DKDPQWLTEHKMAMVSNKFLGSLAVGLNLHVHLIHISNVLQGQITCYTEELQAMKMEMGG 1357

Query: 117  ----------------DVVESLIAALYLDGGIEVAGTFVDKYWKQ 145
                            D+VE+ + A+++D         +D ++K+
Sbjct: 1358 NLEAWTYTNEPPKCLPDIVEAYLGAIFVDSNFNF--DVIDDFFKR 1400


>gi|317148472|ref|XP_001822794.2| RNase3 domain protein [Aspergillus oryzae RIB40]
          Length = 354

 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 5/126 (3%)

Query: 22  LLEKAL-THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
           +LE+A+ TH  +S+  +++Y+RLE LGD  + L+ + L++  F     G +S     LV 
Sbjct: 124 VLERAVFTHPGVSNDTEKTYDRLEILGDAYIELIATKLIWKRFREIPSGRISQIRELLVK 183

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD---GGIEVAGT 137
            ET ++ A    L     V  D  +    + T  +AD+ E+ +AA  +     G  V   
Sbjct: 184 NETLAEYAAGYGLDRKAAVPQDYLRQSKRW-TKTRADIFEAYVAAAIISHPVDGYRVVEN 242

Query: 138 FVDKYW 143
           ++ + W
Sbjct: 243 WLTQLW 248


>gi|325115276|emb|CBZ50831.1| putative helicase [Neospora caninum Liverpool]
          Length = 4082

 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 36/61 (59%)

Query: 22   LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
            LL  A     I     E+YERLE+LGD ++G L++  LF+ F + +EG LS   N L+S 
Sbjct: 3873 LLTVARNRDVILPGLAETYERLEYLGDSVIGFLVTDWLFSRFPAFREGPLSEAKNVLLSN 3932

Query: 82   E 82
            +
Sbjct: 3933 Q 3933


>gi|320585938|gb|EFW98617.1| RNA helicase rnase [Grosmannia clavigera kw1407]
          Length = 2671

 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 63/130 (48%), Gaps = 17/130 (13%)

Query: 18   ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
            ++RSL+  A+  S+ +    ++YE LEF+GD +L L+ +         A EG LS+  + 
Sbjct: 1073 SDRSLITTAI--SAPAARLHDNYEVLEFIGDAVLKLMAAANCAAQNLDAPEGHLSLFKDR 1130

Query: 78   LVSAETCSQVARELDLASFIRVSS-DLR--KDV------------CSFMTSIQADVVESL 122
            LV+     + A E  L  FI  S   LR  +DV                T   ADVVE+L
Sbjct: 1131 LVANSRLCRAATEFGLDRFIVGSQWSLREWRDVKIEAEEEKGGEQLVMSTKTLADVVEAL 1190

Query: 123  IAALYLDGGI 132
            I A  +DGG+
Sbjct: 1191 IGAALVDGGL 1200



 Score = 41.6 bits (96), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQES-YERLEFLGDRILGLLISTLLFN 61
            +TLE+ +GY F   SLL +A+TH S     +    ERLEF+GD +L  +I   L  
Sbjct: 1241 TTLEELLGYQFRRPSLLAEAMTHPSTPGIREGGCMERLEFIGDAVLDYVIVQRLLG 1296


>gi|312213183|emb|CBX93265.1| similar to dicer-like protein 2 [Leptosphaeria maculans]
          Length = 1393

 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            STLE+ IG+ F+ + LL  A+TH+S +  +    Y+R EFLGD +L  +I+  L+ H   
Sbjct: 1090 STLERLIGHTFSKKFLLLDAITHASYLGPNVHCDYQRTEFLGDAVLDFIITKRLYAHTPP 1149

Query: 66   AKEGELSVRFNSLVSA 81
             +   +     ++V+A
Sbjct: 1150 LEHQTMHAIRTAMVNA 1165



 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 66/151 (43%), Gaps = 24/151 (15%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
            LR S L   + +   +  LL KALT SS      E Y++LEF GD IL  + S  L    
Sbjct: 908  LRTSLLSP-VAFQLLDLPLLVKALTSSSTGEV--EDYQQLEFYGDCILKFISSLHLMAAN 964

Query: 64   DSAKEGELSVRFNSLVS--AETCSQVARELD-----------------LASFIRVSSDLR 104
                E  L+ +  ++VS  + T + ++  LD                 L   + V+S   
Sbjct: 965  PKEPESFLTQKKGNIVSNGSLTRASLSAGLDRYVITKRFTGAKWQPRLLVETVTVTSPPN 1024

Query: 105  KDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
            K      + + ADVVES+I A ++ GG   A
Sbjct: 1025 K--VKLSSKLIADVVESIIGASFVVGGFPKA 1053


>gi|212537957|ref|XP_002149134.1| nucleolar RNAse III, putative [Penicillium marneffei ATCC 18224]
 gi|210068876|gb|EEA22967.1| nucleolar RNAse III, putative [Penicillium marneffei ATCC 18224]
          Length = 296

 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 4/114 (3%)

Query: 37  QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96
           +++Y+RLE LGD  + ++ + L+++HF     G +S     LV  ET +  A +      
Sbjct: 67  EQNYDRLEVLGDAYVEVIATRLIWDHFKDMPAGRMSQVREDLVKNETLAGFASQYGFDKR 126

Query: 97  IRVSS-DLRKDVCSFMTSIQADVVESLIAALYL---DGGIEVAGTFVDKYWKQR 146
           + VS+ + +K        I+ DV E+ +AA+ L   D G ++   ++ + W  R
Sbjct: 127 VSVSAPEEQKAQPKRWLKIRGDVFEAYVAAVVLSNPDHGFDIVEQWLRELWLPR 180


>gi|225430894|ref|XP_002269915.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1380

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 68/145 (46%), Gaps = 22/145 (15%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            S LE  + Y+F + SLL +ALTH S +       Y+RLEFLGD +L  L++  L++ +  
Sbjct: 1136 SYLESILNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLMTMHLYHKYPG 1195

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-DLRKDVC---------------- 108
               G L+   ++ V+ +  +Q A +  L   I  SS +L + +                 
Sbjct: 1196 MSPGLLTDLRSASVNNDCYAQSAVKAKLHQHILHSSQELHRHIVVTVGNFDKLPVESTFG 1255

Query: 109  ----SFMTSIQADVVESLIAALYLD 129
                S    +  DV+ESL  A+ +D
Sbjct: 1256 WESESSFPKVLGDVIESLAGAILVD 1280


>gi|297735235|emb|CBI17597.3| unnamed protein product [Vitis vinifera]
          Length = 1340

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 68/145 (46%), Gaps = 22/145 (15%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            S LE  + Y+F + SLL +ALTH S +       Y+RLEFLGD +L  L++  L++ +  
Sbjct: 1096 SYLESILNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLMTMHLYHKYPG 1155

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-DLRKDVC---------------- 108
               G L+   ++ V+ +  +Q A +  L   I  SS +L + +                 
Sbjct: 1156 MSPGLLTDLRSASVNNDCYAQSAVKAKLHQHILHSSQELHRHIVVTVGNFDKLPVESTFG 1215

Query: 109  ----SFMTSIQADVVESLIAALYLD 129
                S    +  DV+ESL  A+ +D
Sbjct: 1216 WESESSFPKVLGDVIESLAGAILVD 1240


>gi|330928085|ref|XP_003302123.1| hypothetical protein PTT_13822 [Pyrenophora teres f. teres 0-1]
 gi|311322704|gb|EFQ89784.1| hypothetical protein PTT_13822 [Pyrenophora teres f. teres 0-1]
          Length = 441

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 5/136 (3%)

Query: 17  FANRS-LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
           F +RS + + ++  S++       YERLE LGD  + L+ S  L+N F      EL +  
Sbjct: 139 FTHRSAIFDPSIPGSTLGQDLSLDYERLELLGDAYIELIASRALYNRFPHVDVPELCMWR 198

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL---DGGI 132
             LV   T  + +        ++  +   K    +   + AD+VE+ +AA+ L   D G 
Sbjct: 199 ERLVENSTLGRFSHAYGFPDRLKHRAMWDKTSKQYQKVV-ADIVEAYVAAIVLSDPDNGF 257

Query: 133 EVAGTFVDKYWKQRAL 148
           E A  ++ + W  + L
Sbjct: 258 EAAEAWLTELWAPQLL 273


>gi|167046030|gb|ABZ10546.1| dicer-like protein D [Placozoa sp. DMJ-2008]
          Length = 351

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 66/166 (39%), Gaps = 47/166 (28%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S + +   Y F N   L  A THSS++    E+Y+RLE+LGD  L  L+   ++      
Sbjct: 174 SCILRNTDYQFNNFYWLRIAFTHSSVA---SENYQRLEYLGDATLEYLLIEFVYCRKPYF 230

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ----------- 115
             G++S   + +   +T S +A      + IR  S L+ D+   M SIQ           
Sbjct: 231 GPGKISHFKSVMTRNQTFSLIAIAFQFYTHIRCHSKLKLDI---MDSIQNFKEILLDNHQ 287

Query: 116 ------------------------------ADVVESLIAALYLDGG 131
                                         ADV E+ IAA+YLD G
Sbjct: 288 DDHQPDIGHFANLAYQLYTSNRYQKLPKVCADVFEAFIAAIYLDCG 333


>gi|258565145|ref|XP_002583317.1| predicted protein [Uncinocarpus reesii 1704]
 gi|237907018|gb|EEP81419.1| predicted protein [Uncinocarpus reesii 1704]
          Length = 1194

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 36/52 (69%), Gaps = 1/52 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           +E+ +GY F  +SL+  ALTH S S + + SY+RLEF+GD +L +++   LF
Sbjct: 902 IEELLGYTFTKKSLVLAALTHPS-STTSRHSYQRLEFIGDSVLDIIVVQALF 952



 Score = 40.8 bits (94), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 59/135 (43%), Gaps = 20/135 (14%)

Query: 17  FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           F++ SL+  A++ S    +   +Y+RLEFLGD +L L  S  L        EG L+ R +
Sbjct: 727 FSDLSLVLTAISSSVAREA--SNYQRLEFLGDSLLKLYTSIELAAKNLQWPEGLLTSRKS 784

Query: 77  SLVSAETCSQVARELDLASFIRV------------------SSDLRKDVCSFMTSIQADV 118
            +VS    ++ A E  L  FI                    + D         T + ADV
Sbjct: 785 HVVSNSHLAKAATETGLDRFILTKPFSGAKWRPSYNTDHVHAGDEEGSPRVMSTKVLADV 844

Query: 119 VESLIAALYLDGGIE 133
           VE+LI A  +DG  E
Sbjct: 845 VEALIGAANIDGADE 859


>gi|221130589|ref|XP_002165718.1| PREDICTED: similar to dicer 1 [Hydra magnipapillata]
          Length = 1615

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/111 (31%), Positives = 59/111 (53%), Gaps = 2/111 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTH-SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            E  I Y F N+S L +A TH S +S+S    Y++ EFLGD IL  LI+  + ++  +  
Sbjct: 787 FEDHISYRFLNKSHLIQAFTHLSYLSNSVTGCYQQYEFLGDAILDFLITLHIQSNTQNLS 846

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSS-DLRKDVCSFMTSIQAD 117
            G+L+   +++V+  T   +A +     +I  SS +L     SF+  ++ D
Sbjct: 847 PGQLTYFRSAVVNNNTFGLLAIKHSFYKYIYSSSNELFSSYNSFIEIVKDD 897



 Score = 37.4 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
           +ALT    S  +    ERLE LGD  L   +S  +F    S  EG+L++R    +S E  
Sbjct: 592 EALTTRQASMPF--DLERLEVLGDSFLKQAVSIFVFFQNPSFHEGKLTIRRKKCISNENL 649

Query: 85  SQVARELDLASFI 97
            +V + + + + I
Sbjct: 650 CKVGKSVGIQNII 662


>gi|255944467|ref|XP_002563001.1| Pc20g04580 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211587736|emb|CAP85787.1| Pc20g04580 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 151

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 8/121 (6%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE  IGY F +RSLLE+AL  +       E  ERL  LGD++L L++    +   ++ ++
Sbjct: 5   LESLIGYQFHDRSLLEEALEEAG---PQTEGNERLALLGDKVLSLMLLHRWYMEGNTTEQ 61

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G   ++  +    +     AR LD   F+    D+++ V        A  V++++ A++L
Sbjct: 62  GTNLLQIYA--GNKHLISRARALDFPKFVIQRLDIKRSVPDHTL---ATTVKAILGAVWL 116

Query: 129 D 129
           D
Sbjct: 117 D 117


>gi|195996181|ref|XP_002107959.1| hypothetical protein TRIADDRAFT_51985 [Trichoplax adhaerens]
 gi|190588735|gb|EDV28757.1| hypothetical protein TRIADDRAFT_51985 [Trichoplax adhaerens]
          Length = 685

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 4/67 (5%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLFNHFD 64
           LE  +GY+F +R LL  ALTH++ +H+      E Y+RLEFLGD IL  ++    ++  +
Sbjct: 433 LEAVLGYSFKDRKLLISALTHATYNHNRIAEGVECYQRLEFLGDAILQYIVVRHCYHANN 492

Query: 65  SAKEGEL 71
           + K  +L
Sbjct: 493 NYKPADL 499



 Score = 37.4 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
           KALT +  +  +  + E LEFLGD  L   +S   F  +    EG+LS   + +VS E  
Sbjct: 248 KALTLARANDDF--NLETLEFLGDSYLKYAVSISFFLSYSKFHEGQLSSLKSKIVSNENL 305

Query: 85  SQVARELDLASFI 97
            Q+  ++ L  +I
Sbjct: 306 YQIGIKMGLPGYI 318


>gi|159126180|gb|EDP51296.1| nucleolar RNAse III, putative [Aspergillus fumigatus A1163]
          Length = 373

 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 4/123 (3%)

Query: 27  LTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQ 86
            TH  +S   + +Y+RLE LGD  + L+ +  ++  ++    G++S     LV  ET S+
Sbjct: 149 FTHPGLSKDSKLTYDRLEILGDAYIELIATRFIWGRYEGFSSGQISQIRELLVKNETLSE 208

Query: 87  VARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL---DGGIEVAGTFVDKYW 143
            A    L +   V  DL      + T  + D+ ES +AA+ L     G  VA  ++ + W
Sbjct: 209 FATLYGLDNRASVPRDLLSQPRRW-TKTKGDIFESYVAAVILSRPSDGYHVAERWLTRLW 267

Query: 144 KQR 146
             R
Sbjct: 268 LPR 270


>gi|212537955|ref|XP_002149133.1| nucleolar RNAse III, putative [Penicillium marneffei ATCC 18224]
 gi|210068875|gb|EEA22966.1| nucleolar RNAse III, putative [Penicillium marneffei ATCC 18224]
          Length = 374

 Score = 48.1 bits (113), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 4/114 (3%)

Query: 37  QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96
           +++Y+RLE LGD  + ++ + L+++HF     G +S     LV  ET +  A +      
Sbjct: 145 EQNYDRLEVLGDAYVEVIATRLIWDHFKDMPAGRMSQVREDLVKNETLAGFASQYGFDKR 204

Query: 97  IRVSS-DLRKDVCSFMTSIQADVVESLIAALYL---DGGIEVAGTFVDKYWKQR 146
           + VS+ + +K        I+ DV E+ +AA+ L   D G ++   ++ + W  R
Sbjct: 205 VSVSAPEEQKAQPKRWLKIRGDVFEAYVAAVVLSNPDHGFDIVEQWLRELWLPR 258


>gi|162447497|ref|YP_001620629.1| dsRNA-spesific ribonuclease [Acholeplasma laidlawii PG-8A]
 gi|161985604|gb|ABX81253.1| dsRNA-spesific ribonuclease [Acholeplasma laidlawii PG-8A]
          Length = 335

 Score = 48.1 bits (113), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 18/172 (10%)

Query: 9   LEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           +E  +GY F N++LL +A T SS    +     E LEF+GD ++  +I  +  N+  +A 
Sbjct: 9   IEDILGYTFTNKNLLIQAFTRSSEREKNNNRDSEILEFIGDTVINYVIIQMFNNNLFNAD 68

Query: 68  ---------EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
                    EGEL+   + +V  +  +    +  L  F+R  SD  K + S   S ++D+
Sbjct: 69  NYGLNSQYSEGELTELKSLIVENKNLAAKIDDFGLDRFLR--SDNSKQIPS---SFKSDL 123

Query: 119 VESLIAALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAK 168
           +ES++ A+ +D   E    +  VD     RA   G  + +   +L++W   +
Sbjct: 124 LESIVGAIAIDSHYEEKEIYEIVDYLLMPRAY-IGSLKFNYYLKLKQWCKIR 174


>gi|321456672|gb|EFX67773.1| hypothetical protein DAPPUDRAFT_115150 [Daphnia pulex]
          Length = 228

 Score = 48.1 bits (113), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 32/46 (69%), Gaps = 1/46 (2%)

Query: 9  LEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGL 53
          +EK IGY F N+ LL +A+THSS  ++   ESY   E++GDR+LG 
Sbjct: 29 VEKTIGYIFKNKLLLIQAMTHSSYKNNCLTESYNEQEWIGDRVLGF 74


>gi|217077865|ref|YP_002335583.1| ribonuclease III [Thermosipho africanus TCF52B]
 gi|217037720|gb|ACJ76242.1| ribonuclease III [Thermosipho africanus TCF52B]
          Length = 159

 Score = 48.1 bits (113), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 72/154 (46%), Gaps = 12/154 (7%)

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE--- 133
           ++ S +   ++ R++ L ++I +     K    +  SI ADVVE+L+AA+Y+D   +   
Sbjct: 7   AVASEDILYEIGRDIGLENYIFLGKGELKSGGKYKKSIIADVVEALVAAIYVDCKKDLNV 66

Query: 134 VAGTFVDKYWKQ-RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
           +   F D + +      SGK   D KT+LQE    +F   P Y            +F   
Sbjct: 67  LENVFHDTFKRYIEIFFSGKRIFDYKTKLQEITQDRFKQLPVYDTV-----SQKNKFITT 121

Query: 193 VEISGLAPAQGMDCSKRAAEQVAAA---EVLKRE 223
           + I G   ++    SK+ +E++AA    E LK E
Sbjct: 122 LYIDGKIYSKAEGFSKKESEKLAAKIAYEKLKEE 155


>gi|296422379|ref|XP_002840738.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636961|emb|CAZ84929.1| unnamed protein product [Tuber melanosporum]
          Length = 524

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 61/139 (43%), Gaps = 27/139 (19%)

Query: 22  LLEKALTHSS--------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           L ++A TH S        +    Q+ YERLEFLGD  L  + S +L+N F   +EG LS 
Sbjct: 275 LRQQAFTHKSFIKGEDAGLPGIEQQHYERLEFLGDSYLQSITSRILYNRFSKLREGPLSD 334

Query: 74  RFNSLVSAETCSQVA---------RELD------LASFIRVSSDLRKDVCSFMTSIQADV 118
               LV+    S  A         RE          + +  S    KD+   +    AD 
Sbjct: 335 MRQQLVANRPLSTYATIYRFHDKVRESKGQNTAAPVALVHNSRGTYKDMG--VNKTLADC 392

Query: 119 VESLIAALYLD--GGIEVA 135
            E+ IAA+ LD   G+++A
Sbjct: 393 FEAYIAAIVLDSPNGVDIA 411


>gi|70984786|ref|XP_747899.1| nucleolar RNAse III [Aspergillus fumigatus Af293]
 gi|66845527|gb|EAL85861.1| nucleolar RNAse III, putative [Aspergillus fumigatus Af293]
          Length = 373

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 4/123 (3%)

Query: 27  LTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQ 86
            TH  +S   + +Y+RLE LGD  + L+ +  ++  ++    G++S     LV  ET S+
Sbjct: 149 FTHPGLSKDSKLTYDRLEILGDAYIELIATRFIWGRYEGFSSGQISQIRELLVKNETLSE 208

Query: 87  VARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL---DGGIEVAGTFVDKYW 143
            A    L +   V  DL      + T  + D+ ES +AA+ L     G  VA  ++ + W
Sbjct: 209 FATLYGLDNRASVPRDLLSQPRRW-TKTKGDIFESYVAAVILSRPSDGYHVAERWLTQLW 267

Query: 144 KQR 146
             R
Sbjct: 268 LPR 270


>gi|530452|emb|CAA83781.1| ribonuclease III [Mycoplasma capricolum subsp. capricolum ATCC
          27343]
          Length = 84

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 38/56 (67%), Gaps = 2/56 (3%)

Query: 19 NRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
          ++ + ++ALTH+S ++    + SY+RLEFLGD IL + +S  LF H+    EGEL+
Sbjct: 16 DQQIYKEALTHNSYANERKLKYSYQRLEFLGDAILQMYVSKFLFFHYSKLGEGELT 71


>gi|146149942|gb|ABQ02405.1| dicer [Schistosoma mansoni]
          Length = 2641

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 19/135 (14%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS------ISHSYQES-------------YERLEF 45
            R+  LE  + Y F + SLL +A TH S      +S S   S             Y+RLEF
Sbjct: 2194 RFDELESSLNYTFKDPSLLIQAFTHPSYHQLRVLSTSNNLSDQSNLMFSTDLDCYQRLEF 2253

Query: 46   LGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK 105
            LGD +L  +I+  L+        G L+   ++LV+    + +A  + L  + R SS    
Sbjct: 2254 LGDAVLDYVITRFLYEDSKQHSPGVLTDLRSALVNNNIFAALAVRIGLHKYFRASSPQLL 2313

Query: 106  DVCSFMTSIQADVVE 120
                     Q DV +
Sbjct: 2314 HTIDVFVRYQKDVAK 2328


>gi|251764794|sp|Q69LX2|DCL2B_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 2b; AltName:
            Full=Dicer-like protein 2b; Short=OsDCL2b
          Length = 1377

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 19/141 (13%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQES-YERLEFLGDRILGLLISTLLFNHFDSA 66
            +LE  +GY F +  LL +ALTH S   S   S Y+RLEFLGD IL  L +   ++ +   
Sbjct: 1134 SLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSKYPDC 1193

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSF--------------- 110
                L+   ++ V+    +  A +  L   I   SS+L + +  +               
Sbjct: 1194 TPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLGQSFTGPSYGWEAG 1253

Query: 111  --MTSIQADVVESLIAALYLD 129
              +  +  DV+ES+  A+YLD
Sbjct: 1254 IGLPKVLGDVIESIAGAIYLD 1274


>gi|222625282|gb|EEE59414.1| hypothetical protein OsJ_11564 [Oryza sativa Japonica Group]
          Length = 1371

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 19/141 (13%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQES-YERLEFLGDRILGLLISTLLFNHFDSA 66
            +LE  +GY F +  LL +ALTH S   S   S Y+RLEFLGD IL  L +   ++ +   
Sbjct: 1128 SLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSKYPDC 1187

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSF--------------- 110
                L+   ++ V+    +  A +  L   I   SS+L + +  +               
Sbjct: 1188 TPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLGQSFTGPSYGWEAG 1247

Query: 111  --MTSIQADVVESLIAALYLD 129
              +  +  DV+ES+  A+YLD
Sbjct: 1248 IGLPKVLGDVIESIAGAIYLD 1268


>gi|50726394|dbj|BAD34005.1| CAF protein-like [Oryza sativa Japonica Group]
 gi|51091635|dbj|BAD36404.1| CAF protein-like [Oryza sativa Japonica Group]
          Length = 1375

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 19/141 (13%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQES-YERLEFLGDRILGLLISTLLFNHFDSA 66
            +LE  +GY F +  LL +ALTH S   S   S Y+RLEFLGD IL  L +   ++ +   
Sbjct: 1132 SLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSKYPDC 1191

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSF--------------- 110
                L+   ++ V+    +  A +  L   I   SS+L + +  +               
Sbjct: 1192 TPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLGQSFTGPSYGWEAG 1251

Query: 111  --MTSIQADVVESLIAALYLD 129
              +  +  DV+ES+  A+YLD
Sbjct: 1252 IGLPKVLGDVIESIAGAIYLD 1272


>gi|322700444|gb|EFY92199.1| Dicer-like protein 2 [Metarhizium acridum CQMa 102]
          Length = 1441

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLI 55
            LE  +GY F  +SLL +A+TH S    Y + SYE LEF+GD IL  +I
Sbjct: 1157 LEHLVGYQFKKKSLLIEAMTHQSCMFDYNRRSYEHLEFIGDAILDFII 1204



 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 68/150 (45%), Gaps = 21/150 (14%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
            +TL +RI     +  L+ +A+  SS S +   +YERLEFLGD IL    +  +       
Sbjct: 976  TTLLERIN--ITDLGLVREAI--SSRSAAEPVNYERLEFLGDSILKYCTAIQVSAIHPEW 1031

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------DLRKDVCS---------- 109
             EG LS   + LV     S+ A ++ LA FI   S        L  D  +          
Sbjct: 1032 PEGYLSFFKDRLVGNSRLSRAAIDVGLAKFILTKSFTGQKWRPLYLDNYTGNPGKVSPRK 1091

Query: 110  FMTSIQADVVESLIAALYLDGGIEVAGTFV 139
              T   ADVVE+LI A Y++GGI  A   +
Sbjct: 1092 ISTKTLADVVEALIGASYINGGITKAQNCI 1121


>gi|297836192|ref|XP_002885978.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297331818|gb|EFH62237.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 57/92 (61%), Gaps = 4/92 (4%)

Query: 9  LEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLFNHFDSA 66
          +EK + Y F +++LL++A+T +S S++   S  +ERLEFLGD +L ++ S  +   + + 
Sbjct: 7  VEKILNYTFTDKNLLKEAITKTSGSNTESSSLLFERLEFLGDSVLLVVFSNHIEITYPNL 66

Query: 67 KEGELS-VRFNSLVSAETCSQVARELDLASFI 97
             +L+ VR  + VS ET ++VA   +L  FI
Sbjct: 67 HPNDLNDVRIAN-VSNETFARVAVNNNLHQFI 97



 Score = 41.6 bits (96), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 67/139 (48%), Gaps = 21/139 (15%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +EK + Y+F N++LL +ALTH+S   S    ++RL F+G   + L  +  ++  +     
Sbjct: 376 VEKILNYSFTNKNLLREALTHNS---SNLLPFQRLMFVGKAGISLAFANHMYLTYPKLGP 432

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDL-RKDVCSFM---------------- 111
            EL++  N+    +  ++VA +  +  F++ +    ++ +  F+                
Sbjct: 433 KELTMLQNANTCNDRYARVAVKRGIYQFLKCNVRTSKRQIIEFIKMLGKEDDPDPFRSVK 492

Query: 112 -TSIQADVVESLIAALYLD 129
              I  D+VES+  A+Y+D
Sbjct: 493 APKILTDLVESVAGAVYID 511


>gi|327355811|gb|EGE84668.1| hypothetical protein BDDG_07613 [Ajellomyces dermatitidis ATCC 18188]
          Length = 1509

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 28/162 (17%)

Query: 12   RIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
            R+GY F    LL  A TH+S   ++     Y+RLEFLGD +L ++    L++ +      
Sbjct: 1228 RLGYQFRYPRLLRSAFTHASFPSAWSRVPCYQRLEFLGDSLLDMVCVEYLYHRYPDRDPQ 1287

Query: 70   ELSVRFNSLVSAETCSQVARELDLA-SFIRVSSDLRKDVCSFMTSIQ------------- 115
             L+    ++VS +    VA +L L    I  S+ L   +  ++  I+             
Sbjct: 1288 WLTEHKMAMVSNKFLGAVAVKLGLHRHLIYFSNALLGQITRYVEEIELAEADSNNSPDAW 1347

Query: 116  ----------ADVVESLIAALYLDGG--IEVAGTFVDKYWKQ 145
                       D++E+ I A+++D     EV   F  ++ KQ
Sbjct: 1348 TTTSDPPKCLPDMLEAYIGAIFVDSNFKFEVVEDFFQQHLKQ 1389



 Score = 38.5 bits (88), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 50/130 (38%), Gaps = 27/130 (20%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
            ++YERLEFLGD  L +  S  LF       E +  V+   L+  +     A  + L  FI
Sbjct: 1059 KNYERLEFLGDCFLKMATSISLFAMNPDNDEYDFHVKRMCLICNQNLFNTAVRIKLYEFI 1118

Query: 98   RVSSDLRKD-------------------VCSFMTSIQADVVESLIAALYLDGG------- 131
            R     R++                     S      AD+ E+LI A  L GG       
Sbjct: 1119 RTQGFSRRNWYPEGIKLLQGKAKSESQNKHSLGDKTIADICEALIGASLLSGGKAHRFDS 1178

Query: 132  -IEVAGTFVD 140
             ++   TFV+
Sbjct: 1179 AVKAVTTFVN 1188


>gi|261198280|ref|XP_002625542.1| dicer-like protein [Ajellomyces dermatitidis SLH14081]
 gi|239595505|gb|EEQ78086.1| dicer-like protein [Ajellomyces dermatitidis SLH14081]
          Length = 1522

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 28/162 (17%)

Query: 12   RIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
            R+GY F    LL  A TH+S   ++     Y+RLEFLGD +L ++    L++ +      
Sbjct: 1241 RLGYQFRYPRLLRSAFTHASFPSAWSRVPCYQRLEFLGDSLLDMVCVEYLYHRYPDRDPQ 1300

Query: 70   ELSVRFNSLVSAETCSQVARELDLA-SFIRVSSDLRKDVCSFMTSIQ------------- 115
             L+    ++VS +    VA +L L    I  S+ L   +  ++  I+             
Sbjct: 1301 WLTEHKMAMVSNKFLGAVAVKLGLHRHLIYFSNALLGQITRYVEEIELAEADSNNSPDAW 1360

Query: 116  ----------ADVVESLIAALYLDGG--IEVAGTFVDKYWKQ 145
                       D++E+ I A+++D     EV   F  ++ KQ
Sbjct: 1361 TTTSDPPKCLPDMLEAYIGAIFVDSNFKFEVVEDFFQQHLKQ 1402



 Score = 38.5 bits (88), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 50/130 (38%), Gaps = 27/130 (20%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
            ++YERLEFLGD  L +  S  LF       E +  V+   L+  +     A  + L  FI
Sbjct: 1072 KNYERLEFLGDCFLKMATSISLFAMNPDNDEYDFHVKRMCLICNQNLFNTAVRIKLYEFI 1131

Query: 98   RVSSDLRKD-------------------VCSFMTSIQADVVESLIAALYLDGG------- 131
            R     R++                     S      AD+ E+LI A  L GG       
Sbjct: 1132 RTQGFSRRNWYPEGIKLLQGKAKSESQNKHSLGDKTIADICEALIGASLLSGGKAHRFDS 1191

Query: 132  -IEVAGTFVD 140
             ++   TFV+
Sbjct: 1192 AVKAVTTFVN 1201


>gi|238497846|ref|XP_002380158.1| RNA helicase/RNAse III, putative [Aspergillus flavus NRRL3357]
 gi|220693432|gb|EED49777.1| RNA helicase/RNAse III, putative [Aspergillus flavus NRRL3357]
          Length = 1339

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 15/108 (13%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
            +Y+R EFLGD IL  ++S  LF    +  EG L+    ++V     ++ A +  L SFI 
Sbjct: 945  NYQRYEFLGDSILKYIVSCQLFFQNLNWPEGFLTEGRTTIVQNPRLTRAALDAGLDSFII 1004

Query: 99   VSS-DLRKDVCSFMTS--------------IQADVVESLIAALYLDGG 131
              +   R+ +   +++              + ADV+E+LI A YLDGG
Sbjct: 1005 TKALTPRRWIAPLISTRVGAAPVKRQMSAKVLADVIEALIGAAYLDGG 1052


>gi|321445499|gb|EFX60714.1| hypothetical protein DAPPUDRAFT_123225 [Daphnia pulex]
          Length = 145

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 32/46 (69%), Gaps = 1/46 (2%)

Query: 9  LEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGL 53
          +EK IGY F N+ LL +A+THSS  ++   ESY   E++GDR+LG 
Sbjct: 29 VEKTIGYIFKNKLLLIQAMTHSSYKNNCLTESYNEQEWIGDRVLGF 74


>gi|146324173|ref|XP_753471.2| RNA helicase/RNAse III [Aspergillus fumigatus Af293]
 gi|129558032|gb|EAL91433.2| RNA helicase/RNAse III, putative [Aspergillus fumigatus Af293]
          Length = 1546

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 15/140 (10%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65
            +E+ +GY F    LL  A+TH S+  ++      Y+RLEFLGD +L ++    LF  F  
Sbjct: 1277 VEEELGYHFTYPRLLASAITHPSLPSTWGYRVPCYQRLEFLGDSLLDMVCVEDLFRRFPD 1336

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFMTSIQ--------- 115
                 LS    ++VS +    ++ +L     I   S+ L+  +  ++  I+         
Sbjct: 1337 RDPQWLSEHKMAMVSNKFLGALSVKLGFHRRIMAFSNPLQAQITHYVEEIETAQAESQGA 1396

Query: 116  --ADVVESLIAALYLDGGIE 133
               D+VE+ + A+++D   +
Sbjct: 1397 CLPDMVEAYLGAIFVDSKFD 1416


>gi|239607869|gb|EEQ84856.1| dicer-like protein [Ajellomyces dermatitidis ER-3]
          Length = 1522

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 28/162 (17%)

Query: 12   RIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
            R+GY F    LL  A TH+S   ++     Y+RLEFLGD +L ++    L++ +      
Sbjct: 1241 RLGYQFRYPRLLRSAFTHASFPSAWSRVPCYQRLEFLGDSLLDMVCVEYLYHRYPDRDPQ 1300

Query: 70   ELSVRFNSLVSAETCSQVARELDLA-SFIRVSSDLRKDVCSFMTSIQ------------- 115
             L+    ++VS +    VA +L L    I  S+ L   +  ++  I+             
Sbjct: 1301 WLTEHKMAMVSNKFLGAVAVKLGLHRHLIYFSNALLGQITRYVEEIELAEADSNNSPDAW 1360

Query: 116  ----------ADVVESLIAALYLDGG--IEVAGTFVDKYWKQ 145
                       D++E+ I A+++D     EV   F  ++ KQ
Sbjct: 1361 TTTSDPPKCLPDMLEAYIGAIFVDSNFKFEVVEDFFQQHLKQ 1402



 Score = 38.5 bits (88), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 50/130 (38%), Gaps = 27/130 (20%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
            ++YERLEFLGD  L +  S  LF       E +  V+   L+  +     A  + L  FI
Sbjct: 1072 KNYERLEFLGDCFLKMATSISLFAMNPDNDEYDFHVKRMCLICNQNLFNTAVRIKLYEFI 1131

Query: 98   RVSSDLRKD-------------------VCSFMTSIQADVVESLIAALYLDGG------- 131
            R     R++                     S      AD+ E+LI A  L GG       
Sbjct: 1132 RTQGFSRRNWYPEGIKLLQGKAKSESQNKHSLGDKTIADICEALIGASLLSGGKAHRFDS 1191

Query: 132  -IEVAGTFVD 140
             ++   TFV+
Sbjct: 1192 AVKAVTTFVN 1201


>gi|256087296|ref|XP_002579808.1| dicer-1 [Schistosoma mansoni]
 gi|238665295|emb|CAZ36047.1| dicer-1, putative [Schistosoma mansoni]
          Length = 2174

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 19/116 (16%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS------ISHSYQES-------------YERLEF 45
            R+  LE  + Y F + SLL +A TH S      +S S   S             Y+RLEF
Sbjct: 1890 RFDELESSLNYTFKDPSLLIQAFTHPSYHQLRVLSTSNNLSDQSNLMFSTDLDCYQRLEF 1949

Query: 46   LGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS 101
            LGD +L  +I+  L+        G L+   ++LV+    + +A  + L  + R SS
Sbjct: 1950 LGDAVLDYVITRFLYEDSKQHSPGVLTDLRSALVNNNIFAALAVRIGLHKYFRASS 2005


>gi|15242329|ref|NP_199328.1| RTL3 (RNase three-like protein 3); RNA binding / double-stranded
           RNA binding / ribonuclease III [Arabidopsis thaliana]
 gi|75171238|sp|Q9FKF0|RTL3_ARATH RecName: Full=Ribonuclease 3-like protein 3; AltName:
           Full=Ribonuclease III-like protein 3; Short=RNase
           III-like protein 3; AltName: Full=Ribonuclease
           three-like protein 3
 gi|9759600|dbj|BAB11388.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007827|gb|AED95210.1| RNAse THREE-like protein 3 [Arabidopsis thaliana]
          Length = 957

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/145 (26%), Positives = 72/145 (49%), Gaps = 25/145 (17%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +EK + Y+F N++LL++A+T  S        ++RLEF GD IL +  +  + + + + K 
Sbjct: 7   VEKILNYSFVNKTLLKEAITQKS------PLFDRLEFFGDSILEVAFTNYICHTYPNLKV 60

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSS-DLRKDVCSFMTSIQ------------ 115
            EL     + VS E  +++A   +L  F+ + +  L K V +F  +++            
Sbjct: 61  KELRDLRTANVSNEKFARIAVNHNLHHFLLLQNPSLFKKVKNFAEAVRKEDDPVPYGGLV 120

Query: 116 ------ADVVESLIAALYLDGGIEV 134
                 AD +ES+ A +++D   +V
Sbjct: 121 KAPKILADTLESIAATVFIDVNYDV 145


>gi|159126799|gb|EDP51915.1| RNA helicase/RNAse III, putative [Aspergillus fumigatus A1163]
          Length = 1546

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 15/140 (10%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65
            +E+ +GY F    LL  A+TH S+  ++      Y+RLEFLGD +L ++    LF  F  
Sbjct: 1277 VEEELGYHFTYPRLLASAITHPSLPSTWGYRVPCYQRLEFLGDSLLDMVCVEDLFRRFPD 1336

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFMTSIQ--------- 115
                 LS    ++VS +    ++ +L     I   S+ L+  +  ++  I+         
Sbjct: 1337 RDPQWLSEHKMAMVSNKFLGALSVKLGFHRRIMAFSNPLQAQITHYVEEIETAQAESQGA 1396

Query: 116  --ADVVESLIAALYLDGGIE 133
               D+VE+ + A+++D   +
Sbjct: 1397 CLPDMVEAYLGAIFVDSKFD 1416


>gi|297794785|ref|XP_002865277.1| hypothetical protein ARALYDRAFT_917014 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297311112|gb|EFH41536.1| hypothetical protein ARALYDRAFT_917014 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 786

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 75/157 (47%), Gaps = 32/157 (20%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           T+EK + Y+F N++LL++A+T S         ++RLEFLGD +L + ++  + + + + K
Sbjct: 6   TVEKILNYSFKNKTLLKEAITLSP-------RFKRLEFLGDSVLEVALANYIHHAYPNLK 58

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFI--RVSSDLRKDVCSFMTSIQ---------- 115
             EL     + V+ E  ++   + +L  FI    SS   + +  F  ++           
Sbjct: 59  LQELCDLRTANVNNEKFARATVKHNLYQFIIGEKSSSPSEKIKEFSEAVSKEDVPVPYGG 118

Query: 116 --------ADVVESLIAALYLDGGIEVAGTFVDKYWK 144
                    D+VES+  A+Y+D   +V      ++W+
Sbjct: 119 LVEAPKVLGDIVESIAGAVYIDVDFDVQ-----RFWE 150



 Score = 38.9 bits (89), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 33/153 (21%), Positives = 69/153 (45%), Gaps = 25/153 (16%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M +     +EK + Y F N++LL++AL  +S        +++L F+G   L L I+  ++
Sbjct: 467 MDSDSVKAVEKILNYVFTNKNLLKEALRQTS------SLFQKLRFVGRAALVLAITNHIY 520

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF---------- 110
             + + +  EL +        +T ++VA + ++  F        K + +F          
Sbjct: 521 LRYPNFEPRELELLQRGNTCNKTLARVAVKHNIHQFFIGQFKSEKKIEAFSKVVGKEDDP 580

Query: 111 ---------MTSIQADVVESLIAALYLDGGIEV 134
                     T++ +D+VES+  A+Y+D   ++
Sbjct: 581 VPSDGRSERTTNVLSDLVESVAGAVYIDMNFDI 613


>gi|167046020|gb|ABZ10541.1| dicer-like protein B [Trichoplax adhaerens]
          Length = 357

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 4/67 (5%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLFNHFD 64
           LE  +GY+F +R LL  ALTH++ +H+      E Y+RLEFLGD IL  ++    ++  +
Sbjct: 187 LEAVLGYSFKDRKLLISALTHATYNHNRIAEGVECYQRLEFLGDAILQYIVVRHCYHANN 246

Query: 65  SAKEGEL 71
           + K  +L
Sbjct: 247 NYKPADL 253


>gi|147833654|emb|CAN77284.1| hypothetical protein VITISV_043738 [Vitis vinifera]
          Length = 1296

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 99/238 (41%), Gaps = 27/238 (11%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            S LE  + Y+F + SLL ++LTH S +       Y+RLEFLGD +L  L++  L++ +  
Sbjct: 1052 SYLESILNYSFRDPSLLVESLTHGSYMLPEIPRCYQRLEFLGDAVLDYLMTMHLYHKYPG 1111

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-DLRKDVC---------------- 108
               G L+   ++ V+ +  +Q A +  L   I  SS +L + +                 
Sbjct: 1112 MSPGLLTDLRSASVNNDCYAQSAVKAKLHQHILHSSQELHRHIVVTVGBFDKLPXESTFG 1171

Query: 109  ----SFMTSIQADVVESLIAALYLDGGIEVAGTFVD-KYWKQRALKSGKFRRDAKTELQE 163
                S    +  DV+ESL  A+ +D        F   +   +  +     +     EL E
Sbjct: 1172 WESESSFPKVLGDVIESLAGAILVDSDYNKEVVFQSIRPLLEPLITPETVKLHPARELXE 1231

Query: 164  WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
                +        V+ ++G       T+ VE +G          KR A ++A+ EVLK
Sbjct: 1232 LCQKEHYXIKRVVVS-QNG---KASVTIEVEANGAKHKHTSTSDKRTAXKLASKEVLK 1285


>gi|145613552|ref|XP_363615.2| hypothetical protein MGG_01541 [Magnaporthe oryzae 70-15]
 gi|145020615|gb|EDK04744.1| hypothetical protein MGG_01541 [Magnaporthe oryzae 70-15]
          Length = 1534

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 2/56 (3%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLF 60
            S ++ ++GY F N  LL  A  H S    Y+   SY+RLEFLGD +L ++    LF
Sbjct: 1187 SQIKNKMGYRFKNPRLLRCAFMHPSYPRQYENIPSYQRLEFLGDSLLDMVCVDYLF 1242


>gi|167046022|gb|ABZ10542.1| dicer-like protein B [Placozoa sp. DMJ-2008]
          Length = 357

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 4/67 (5%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLFNHFD 64
           LE  +GY+F +R LL  ALTH++ +H+      E Y+RLEFLGD IL  ++    ++  +
Sbjct: 187 LEAVLGYSFKDRKLLISALTHATYNHNRIAEGVECYQRLEFLGDAILQYIVVRHCYHANN 246

Query: 65  SAKEGEL 71
           + K  +L
Sbjct: 247 NYKPADL 253


>gi|158706447|sp|A4RKC3|DCL1_MAGO7 RecName: Full=Dicer-like protein 1; Includes: RecName:
            Full=Endoribonuclease DCL1; Includes: RecName:
            Full=ATP-dependent helicase DCL1
          Length = 1591

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 2/56 (3%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLF 60
            S ++ ++GY F N  LL  A  H S    Y+   SY+RLEFLGD +L ++    LF
Sbjct: 1244 SQIKNKMGYRFKNPRLLRCAFMHPSYPRQYENIPSYQRLEFLGDSLLDMVCVDYLF 1299


>gi|312212763|emb|CBX92846.1| hypothetical protein [Leptosphaeria maculans]
          Length = 1067

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 16/144 (11%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHS--YQ------ESYERLEFLGDRILGL 53
           +A+R   +E R GY F N+ L  +AL ++  +    Y+      +   RL  LGDR+LGL
Sbjct: 123 AAVRVGHIEARTGYNFKNKFLCIEALKNTGKNWPLYYKGVVVEIDRNNRLALLGDRVLGL 182

Query: 54  LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV-ARELDLASFIRVSSDLRKDVCSFMT 112
            +  + F+   S   G  SV  NS +       V  R + L   I +  +L     S + 
Sbjct: 183 ALCEIWFHSGHST--GNYSV-MNSFIETRAALNVTGRAMKLHQDILLQHELAVPANSHV- 238

Query: 113 SIQADVVESLIAALYLDGGIEVAG 136
              A+  E++I A+Y+D G  V  
Sbjct: 239 ---AEAFEAIIGAIYVDSGHNVPA 259


>gi|242221926|ref|XP_002476701.1| predicted protein [Postia placenta Mad-698-R]
 gi|220724029|gb|EED78105.1| predicted protein [Postia placenta Mad-698-R]
          Length = 232

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 1/55 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLF 60
           S +E  +GY F +++LL +ALTH+S        SYERLEFLGD  L ++++  L+
Sbjct: 178 SLVETMLGYEFTHKALLVQALTHASYHGDLTTMSYERLEFLGDSALDMVVTDWLY 232


>gi|281414106|ref|ZP_06245848.1| RNAse III [Micrococcus luteus NCTC 2665]
          Length = 74

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 2/67 (2%)

Query: 23 LEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
          LE+ALTH S ++      + ERLEFLGD +LG +++  +F  +    EG+L+ R  ++VS
Sbjct: 8  LERALTHRSFAYEQGGLPTNERLEFLGDSVLGYVVTDHIFTVYPDLAEGDLARRRAAVVS 67

Query: 81 AETCSQV 87
              ++V
Sbjct: 68 TRALAKV 74


>gi|116205049|ref|XP_001228335.1| hypothetical protein CHGG_10408 [Chaetomium globosum CBS 148.51]
 gi|88176536|gb|EAQ84004.1| hypothetical protein CHGG_10408 [Chaetomium globosum CBS 148.51]
          Length = 1227

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 3/77 (3%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSA- 66
            LE  +GY F  ++LL +A+TH S +    + S +RLEFLGD IL  ++   LF   D A 
Sbjct: 1117 LESLVGYTFTKKALLVEAMTHPSCNGPGIRASLDRLEFLGDAILDYVVVNKLFAISDPAP 1176

Query: 67   -KEGELSVRFNSLVSAE 82
             +   L +   +LV+A+
Sbjct: 1177 LENSSLHLLRTALVNAD 1193



 Score = 38.5 bits (88), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 69/167 (41%), Gaps = 21/167 (12%)

Query: 9    LEKRI-GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            LE R+      + SL+  A+T S+        YER+EFLGD IL    +      +    
Sbjct: 934  LESRLEQTGITDLSLIVTAITASAARGP--TDYERIEFLGDSILKFCTTINCSATYLKFP 991

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFI------------RVSSDLRKDVCS------ 109
            EG LS   + +VS     + A +  L  +I                DL ++  S      
Sbjct: 992  EGCLSPLKDKIVSNSRLFRAAVDFGLDRYIIHKAFTLHKWRPTYVEDLIENPPSATETRR 1051

Query: 110  FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD 156
              T I ADVVE+LI   ++ GGI  A   +  +    A  S ++ R+
Sbjct: 1052 ISTKIIADVVEALIGTAFVSGGISKALACMSLFLPDVAWNSIEYGRE 1098


>gi|161783812|sp|Q7SCC1|DCL2_NEUCR RecName: Full=Dicer-like protein 2; Includes: RecName:
            Full=Endoribonuclease dcl-2; Includes: RecName:
            Full=ATP-dependent helicase dcl-2
 gi|18376024|emb|CAB91758.2| related to RNA helicase/RNAseIII CAF [Neurospora crassa]
          Length = 1540

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 4/86 (4%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHF--D 64
            LEK + Y F  +SLL +A+TH S +   + +  YERLEFLGD IL +++   L      +
Sbjct: 1162 LEKAMDYTFNKKSLLIEAMTHPSCAGLGTNESCYERLEFLGDAILDVIVVKRLMAETGPN 1221

Query: 65   SAKEGELSVRFNSLVSAETCSQVARE 90
                 ++    +S+V+A+  + +A E
Sbjct: 1222 ELAHNDMHEHLSSVVTADIMAFLAME 1247



 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 66/161 (40%), Gaps = 28/161 (17%)

Query: 1    MSALRYSTLEKRIG-YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILG----LLI 55
            MS +    +  R+G     N  L+  AL  S        +YERLEF+GD IL     L  
Sbjct: 959  MSLVAADLMYNRLGCLQLDNLPLITTALISSG--SRGPTNYERLEFIGDTILKFCACLTA 1016

Query: 56   STLLFNH--FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI---------------- 97
            S L  +H    +  E  LS   + LV+     + +R+  L  +I                
Sbjct: 1017 SALSAHHSIVPNHHERLLSQWKDKLVNNVRLCRASRDFGLDEYIINSAASKKWRPKFVED 1076

Query: 98   ---RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
                + S +  +     + + ADVVESLI A Y+ GG+  A
Sbjct: 1077 YMDEMKSPISAETRQMSSKMVADVVESLIGAAYMCGGMSKA 1117


>gi|164424566|ref|XP_963538.2| hypothetical protein NCU06766 [Neurospora crassa OR74A]
 gi|157070568|gb|EAA34302.2| predicted protein [Neurospora crassa OR74A]
          Length = 1421

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 4/86 (4%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHF--D 64
            LEK + Y F  +SLL +A+TH S +   + +  YERLEFLGD IL +++   L      +
Sbjct: 1043 LEKAMDYTFNKKSLLIEAMTHPSCAGLGTNESCYERLEFLGDAILDVIVVKRLMAETGPN 1102

Query: 65   SAKEGELSVRFNSLVSAETCSQVARE 90
                 ++    +S+V+A+  + +A E
Sbjct: 1103 ELAHNDMHEHLSSVVTADIMAFLAME 1128


>gi|50290469|ref|XP_447666.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526976|emb|CAG60603.1| unnamed protein product [Candida glabrata]
          Length = 734

 Score = 46.6 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 95/205 (46%), Gaps = 20/205 (9%)

Query: 37  QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96
           + SYERLEFLGD ++  +++T+++  F +   G+++     LVS     + A    L   
Sbjct: 453 KNSYERLEFLGDSVINSIMTTIIYKSFPNYDAGQMTRLRVLLVSNRRLEKWAYLYGLQKH 512

Query: 97  IRVSSDLRKDVC---SFMTSIQADVVESLIAALYLD---GGI----EVAGTFVDKYWKQR 146
           + +   +  ++    S +  I AD+ E+ +  L  D   G +    +   T  ++  K  
Sbjct: 513 LLIRKSILNEMLNSGSKVYKIYADLFEAYVGGLVEDDPTGNMPKIRDWLSTLAEEAIKTI 572

Query: 147 ALKSG------KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV--EISGL 198
           + K+           +AKT+L++   A  G+  +Y +T R      P FTV+     +G 
Sbjct: 573 SDKNALPGTDNNINMNAKTQLEKLL-APVGLEAQYVITNRRSSKKSP-FTVIECRVANGQ 630

Query: 199 APAQGMDCSKRAAEQVAAAEVLKRE 223
               G   + + AEQ+AA  +L+++
Sbjct: 631 VTGIGKGRNYKIAEQIAAGNILEKK 655


>gi|295673975|ref|XP_002797533.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
 gi|226280183|gb|EEH35749.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
          Length = 1450

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 1/77 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            +  +E  +GY F  +  L +A TH S   S   SY+RLEFLGD IL  +I   LFN   +
Sbjct: 1136 FRDIESLVGYTFNKKVFLAQAFTHPSNPGSTM-SYQRLEFLGDSILDHIIVDHLFNSPRN 1194

Query: 66   AKEGELSVRFNSLVSAE 82
                ++ +   SL +A+
Sbjct: 1195 FPHVDMHLMRASLANAD 1211



 Score = 39.3 bits (90), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 48/111 (43%), Gaps = 20/111 (18%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
            +Y+R+EFLGD IL    S  L        EG LS   + +VS +  S  A E  L  FI 
Sbjct: 985  NYQRIEFLGDSILKFHTSLQLLAANPIWHEGLLSNAKDEVVSNKRLSYAAIETGLDKFIF 1044

Query: 99   VS------------------SDLRKDVCSFMTSIQADVVESLIAALYLDGG 131
            V                    D+ +   S  T   ADV+E+L+ A  +DGG
Sbjct: 1045 VDIFTGVKWRPLYNKAHVKEQDIPRREMS--TKTLADVIEALLGAATIDGG 1093


>gi|115453927|ref|NP_001050564.1| Os03g0583900 [Oryza sativa Japonica Group]
 gi|122246906|sp|Q10HL3|DCL2A_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 2a; AltName:
            Full=Dicer-like protein 2a; Short=OsDCL2a
 gi|50399921|gb|AAT76309.1| putative RNA helicase/RNAseIII protein, C-terminus truncated [Oryza
            sativa Japonica Group]
 gi|108709535|gb|ABF97330.1| Type III restriction enzyme, res subunit family protein, expressed
            [Oryza sativa Japonica Group]
 gi|113549035|dbj|BAF12478.1| Os03g0583900 [Oryza sativa Japonica Group]
 gi|215701504|dbj|BAG92928.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 1410

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 22/144 (15%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQES-YERLEFLGDRILGLLISTLLFNHFDSA 66
            +LE  +GY F +  LL +ALTH S   S   S Y+RLEFLGD IL  L +   ++ +   
Sbjct: 1163 SLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSKYPDC 1222

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSF--------------- 110
                L+   ++ V+    +  A +  L   I   SS+L + +  +               
Sbjct: 1223 TPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLEEFGQSFTGPSYGW 1282

Query: 111  -----MTSIQADVVESLIAALYLD 129
                 +  +  DV+ES+  A+YLD
Sbjct: 1283 EAGIGLPKVLGDVIESIAGAIYLD 1306


>gi|41469333|gb|AAS07189.1| putative ribonuclease III, 5'-partial (with alternative splicing)
           [Oryza sativa Japonica Group]
          Length = 1017

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 22/144 (15%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQES-YERLEFLGDRILGLLISTLLFNHFDSA 66
           +LE  +GY F +  LL +ALTH S   S   S Y+RLEFLGD IL  L +   ++ +   
Sbjct: 770 SLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSKYPDC 829

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSF--------------- 110
               L+   ++ V+    +  A +  L   I   SS+L + +  +               
Sbjct: 830 TPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLEEFGQSFTGPSYGW 889

Query: 111 -----MTSIQADVVESLIAALYLD 129
                +  +  DV+ES+  A+YLD
Sbjct: 890 EAGIGLPKVLGDVIESIAGAIYLD 913


>gi|218193216|gb|EEC75643.1| hypothetical protein OsI_12390 [Oryza sativa Indica Group]
          Length = 1318

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 22/144 (15%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQES-YERLEFLGDRILGLLISTLLFNHFDSA 66
            +LE  +GY F +  LL +ALTH S   S   S Y+RLEFLGD IL  L +   ++ +   
Sbjct: 1071 SLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSKYPDC 1130

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSF--------------- 110
                L+   ++ V+    +  A +  L   I   SS+L + +  +               
Sbjct: 1131 TPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLEEFGQSFTGPSYGW 1190

Query: 111  -----MTSIQADVVESLIAALYLD 129
                 +  +  DV+ES+  A+YLD
Sbjct: 1191 EAGIGLPKVLGDVIESIAGAIYLD 1214


>gi|321460745|gb|EFX71784.1| hypothetical protein DAPPUDRAFT_111332 [Daphnia pulex]
          Length = 134

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 8/80 (10%)

Query: 9   LEKRIGYAFANRSLLEKALTHSS---ISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           LEK +GY F N+  L+ ALTH++   I    ++S +RLE LGD+ LG +I    +  + +
Sbjct: 38  LEKILGYEFQNKDNLKLALTHTTSNPIKCPSKDS-DRLETLGDKFLGAMIMVKYYKTYPT 96

Query: 66  AKEGELSVRFNSLVSAETCS 85
              GEL+    +L S  TC+
Sbjct: 97  YGAGELA----NLTSMITCN 112


>gi|307353641|ref|YP_003894692.1| ribonuclease III [Methanoplanus petrolearius DSM 11571]
 gi|307156874|gb|ADN36254.1| ribonuclease III [Methanoplanus petrolearius DSM 11571]
          Length = 173

 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 67/130 (51%), Gaps = 9/130 (6%)

Query: 9   LEKRIGYAFANRSLLEKALTH--SSISHSYQESY--ERLEFLGDRILGLLISTLLFNHFD 64
           LE+ IGY F N  LL +ALT    S+ +   E +  + L  LGD ++ +++   L     
Sbjct: 34  LEEIIGYRFKNHELLTRALTRLAYSLENDLPEGFHMDALATLGDAVIDVIVLESLMKSGL 93

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS--IQADVVESL 122
            +K GELSV  + +V+     + A  ++L  ++       ++     TS  + A++ E+L
Sbjct: 94  YSK-GELSVAKSDIVNMTRLRKAAESIELFRYVHWGKG--EEASHIWTSGRVMAELCEAL 150

Query: 123 IAALYLDGGI 132
             A+YLDGG+
Sbjct: 151 AGAVYLDGGL 160


>gi|168061351|ref|XP_001782653.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162665886|gb|EDQ52556.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 514

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 89/204 (43%), Gaps = 20/204 (9%)

Query: 31  SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90
           + + ++ E+  +L  +GD +L L+ ST L   +     G ++ R + LV     S +AR 
Sbjct: 307 TFADAHAEARLKLALIGDTVLNLVASTHLIRQYPLLSTGSITERRSQLVCN---SNLARA 363

Query: 91  ----LDLASFIRVSSDLRKDVCSFMTSIQ-------ADVVESLIAALYLDGGIEVAGTFV 139
               LDL   +     L +   +  T++        AD +E+ I  LY++ G+E    FV
Sbjct: 364 WCTLLDLRELVLCDPLLSRSKKASATALLENQMKACADTLEAYIGGLYVEKGLESTLQFV 423

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK---VTFRSGPDHDPRFTVVVEIS 196
           +       L   K  R+  T L +         P+YK   V  ++ P+   R  V V+  
Sbjct: 424 ETR-LLPLLLLAKPTRNPVTILHDRCAMVLQEKPDYKLIGVDNQNTPNESCRIRVYVK-- 480

Query: 197 GLAPAQGMDCSKRAAEQVAAAEVL 220
           G   + G+  S+R A Q AA + L
Sbjct: 481 GFRLSTGIGKSQRLARQDAAEKAL 504


>gi|224613135|dbj|BAH24240.1| dsRNA-specific ribonuclease RNaseIII [Candidatus Phytoplasma
           oryzae]
          Length = 161

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 61/135 (45%), Gaps = 5/135 (3%)

Query: 88  ARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI-EVAGTFVDKYWKQR 146
           ARE+ L  +I +    +K    +  SI AD  E+L  A+YLD G  EV   F        
Sbjct: 4   AREIKLKDYILLGKGEKKRYI-YNYSIIADAFEALFGAIYLDLGYSEVERVFYHIILP-- 60

Query: 147 ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206
            LK      D KT+LQE    +      YK+    G  H+ +F     +      +G+  
Sbjct: 61  CLKKTINIIDFKTKLQELVQTE-KKNICYKIISEKGLAHEKKFLAEAYLENKCLGRGLGK 119

Query: 207 SKRAAEQVAAAEVLK 221
           +K+AAEQ AA + LK
Sbjct: 120 TKKAAEQRAAEKALK 134


>gi|50897085|dbj|BAD34723.1| Dicer-related RNase III protein Dcr2p [Tetrahymena thermophila]
          Length = 1838

 Score = 46.2 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 23/122 (18%)

Query: 35   SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLA 94
            +Y    +RLEFLGD +L L+I   LFN F ++  GEL+    SLV  +T   +       
Sbjct: 1617 NYNLCNQRLEFLGDAVLDLIIVEYLFNKFPNSDPGELTQMKTSLVQNKTLCLINLMKGFY 1676

Query: 95   SFIRVSSD--------LRKDVCSFM--TSIQ-------------ADVVESLIAALYLDGG 131
             FI  S          L  +V  FM  TS+               DV+ESL+ A+++D  
Sbjct: 1677 KFIIGSIQHNKEEIELLLNNVEMFMGDTSLMYDTTYNQSLIKTLGDVIESLVGAIFIDNN 1736

Query: 132  IE 133
            ++
Sbjct: 1737 LD 1738


>gi|121713724|ref|XP_001274473.1| RNase3 domain protein [Aspergillus clavatus NRRL 1]
 gi|119402626|gb|EAW13047.1| RNase3 domain protein [Aspergillus clavatus NRRL 1]
          Length = 1552

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 83/197 (42%), Gaps = 33/197 (16%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65
            +E+++GY F    LL  A+TH S   ++      Y+RLEFLGD +L ++    LF+ F  
Sbjct: 1271 VEEKLGYHFRYPRLLCSAVTHPSTPSTWYFRVPCYQRLEFLGDSLLDMVCVEDLFHRFPD 1330

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFMTSIQ--------- 115
                 L+    ++VS +    +A +L     I+  S+ L+  +  ++  I+         
Sbjct: 1331 RDPQWLTEHKMAMVSNKFLGALAVKLGFHKHIKAFSNPLQAQITYYVEEIETAEAESEGA 1390

Query: 116  --------------ADVVESLIAALYLDG--GIEVAGTF----VDKYWKQRALKSGKFRR 155
                           D+VE+ + A+++D     EV   F    +  Y++  ++      +
Sbjct: 1391 VDYWVVAKDPPKCLPDMVEAYLGAIFVDSDFSFEVIEAFFQAQIKPYFQDMSIYDTFANK 1450

Query: 156  DAKTELQEWAHAKFGVT 172
               T L      +FG T
Sbjct: 1451 HPTTFLHNRLANEFGCT 1467



 Score = 39.3 bits (90), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 47/118 (39%), Gaps = 22/118 (18%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
            ++YERLEFLGD  L +  S  LF       E +  V    L+  +     A++  +  +I
Sbjct: 1102 KNYERLEFLGDCFLKMATSIALFTQNPDDDEFDYHVNRMCLICNKNLFNTAKKRQIYRYI 1161

Query: 98   RVSSDLR-------------KDVCSFMTS---------IQADVVESLIAALYLDGGIE 133
            R  S  R             KD    M S           ADV E+LI A  L GG E
Sbjct: 1162 RSRSFSRHVWYPDGLTLLQGKDHSKKMLSQAKHALGEKTIADVCEALIGACLLSGGPE 1219


>gi|296417821|ref|XP_002838549.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634492|emb|CAZ82740.1| unnamed protein product [Tuber melanosporum]
          Length = 1490

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 35/53 (66%), Gaps = 1/53 (1%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLF 60
            LE  IGY F +++LL +A+TH S  S     SY+R+EFLGD +L +++   LF
Sbjct: 1108 LESLIGYHFTHKALLLEAITHPSWESDMTSLSYQRMEFLGDALLDMVVVNHLF 1160



 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 58/143 (40%), Gaps = 20/143 (13%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            LE+ + +     S+ +     S+ S      Y+R EFLGD +L  L S  L +      E
Sbjct: 921  LERTLLHPVGFNSIPKMVTALSASSARESTDYQRFEFLGDSVLKFLTSVNLLDEHPFWHE 980

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFI--------------------RVSSDLRKDVC 108
            G L+ +   +V+    ++ A +  LA +I                          RK   
Sbjct: 981  GYLTRKKEQMVANSRLARAAIDNRLAKWIITDIFTGSKWRPRYVISEEEEFPEKKRKGPK 1040

Query: 109  SFMTSIQADVVESLIAALYLDGG 131
               T I ADVVE+LI A YL+G 
Sbjct: 1041 QLSTKILADVVEALIGAAYLEGN 1063


>gi|146180696|ref|XP_001470932.1| conserved hypothetical protein [Tetrahymena thermophila]
 gi|146144409|gb|EDK31487.1| conserved hypothetical protein [Tetrahymena thermophila SB210]
          Length = 1822

 Score = 46.2 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 23/122 (18%)

Query: 35   SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLA 94
            +Y    +RLEFLGD +L L+I   LFN F ++  GEL+    SLV  +T   +       
Sbjct: 1601 NYNLCNQRLEFLGDAVLDLIIVEYLFNKFPNSDPGELTQMKTSLVQNKTLCLINLMKGFY 1660

Query: 95   SFIRVSSD--------LRKDVCSFM--TSIQ-------------ADVVESLIAALYLDGG 131
             FI  S          L  +V  FM  TS+               DV+ESL+ A+++D  
Sbjct: 1661 KFIIGSIQHNKEEIELLLNNVEMFMGDTSLMYDTTYNQSLIKTLGDVIESLVGAIFIDNN 1720

Query: 132  IE 133
            ++
Sbjct: 1721 LD 1722


>gi|158706452|sp|A2RAF3|DCL1_ASPNC RecName: Full=Dicer-like protein 1; Includes: RecName:
            Full=Endoribonuclease dcl1; Includes: RecName:
            Full=ATP-dependent helicase dcl1
          Length = 1525

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 72/164 (43%), Gaps = 28/164 (17%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66
            +E+++ Y F   +LL  A TH S   ++ +   Y+RLEFLGD ++ ++    LF  F   
Sbjct: 1246 IEEKLSYRFRYPTLLGSAFTHPSYPSAWAKVPCYQRLEFLGDSLIDMVCVEDLFARFPDR 1305

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ---------- 115
                L+    ++VS +    +A +L L + ++  S+ L+  +  +   IQ          
Sbjct: 1306 DPQWLTEHKMAMVSNKFLGALAVKLGLHTHLKYFSAPLQSQITQYAEEIQTAEGESEGAV 1365

Query: 116  -------------ADVVESLIAALYLDG--GIEVAGTFVDKYWK 144
                          D+VE+ + A+++D     EV   F   Y K
Sbjct: 1366 DYWTVTKDPPKCLPDMVEAYVGAVFVDSDFNFEVIERFFRDYIK 1409


>gi|322798617|gb|EFZ20221.1| hypothetical protein SINV_06556 [Solenopsis invicta]
          Length = 386

 Score = 46.2 bits (108), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 34/141 (24%)

Query: 25  KALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83
           +A TH S + +   E Y+RLEFLGD IL  LI+  ++    +   GEL+   ++LV+  T
Sbjct: 150 QAFTHPSYTANGLTECYQRLEFLGDAILDFLITCYIYEKCGNLSPGELTDLRSALVNNIT 209

Query: 84  --CSQVARELDLA-------------SFIRVSSD-------------LRKDVCSF----- 110
             C  V   L +A              F++   D             + ++ C+      
Sbjct: 210 FACLAVRYGLHIALLAYAPKLDEIIDRFVKFQEDRDYVVNDELLYVLIEEEECNLVEYVD 269

Query: 111 MTSIQADVVESLIAALYLDGG 131
           +  +  D+ ESLI A+YLD G
Sbjct: 270 VPKVLGDLFESLIGAIYLDSG 290


>gi|158706457|sp|A1CBC9|DCL1_ASPCL RecName: Full=Dicer-like protein 1; Includes: RecName:
            Full=Endoribonuclease dcl1; Includes: RecName:
            Full=ATP-dependent helicase dcl1
          Length = 1534

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 83/197 (42%), Gaps = 33/197 (16%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65
            +E+++GY F    LL  A+TH S   ++      Y+RLEFLGD +L ++    LF+ F  
Sbjct: 1253 VEEKLGYHFRYPRLLCSAVTHPSTPSTWYFRVPCYQRLEFLGDSLLDMVCVEDLFHRFPD 1312

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFMTSIQ--------- 115
                 L+    ++VS +    +A +L     I+  S+ L+  +  ++  I+         
Sbjct: 1313 RDPQWLTEHKMAMVSNKFLGALAVKLGFHKHIKAFSNPLQAQITYYVEEIETAEAESEGA 1372

Query: 116  --------------ADVVESLIAALYLDG--GIEVAGTF----VDKYWKQRALKSGKFRR 155
                           D+VE+ + A+++D     EV   F    +  Y++  ++      +
Sbjct: 1373 VDYWVVAKDPPKCLPDMVEAYLGAIFVDSDFSFEVIEAFFQAQIKPYFQDMSIYDTFANK 1432

Query: 156  DAKTELQEWAHAKFGVT 172
               T L      +FG T
Sbjct: 1433 HPTTFLHNRLANEFGCT 1449



 Score = 39.3 bits (90), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 47/118 (39%), Gaps = 22/118 (18%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
            ++YERLEFLGD  L +  S  LF       E +  V    L+  +     A++  +  +I
Sbjct: 1084 KNYERLEFLGDCFLKMATSIALFTQNPDDDEFDYHVNRMCLICNKNLFNTAKKRQIYRYI 1143

Query: 98   RVSSDLR-------------KDVCSFMTS---------IQADVVESLIAALYLDGGIE 133
            R  S  R             KD    M S           ADV E+LI A  L GG E
Sbjct: 1144 RSRSFSRHVWYPDGLTLLQGKDHSKKMLSQAKHALGEKTIADVCEALIGACLLSGGPE 1201


>gi|317037196|ref|XP_001398755.2| dicer-like protein 1 [Aspergillus niger CBS 513.88]
          Length = 1493

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 72/164 (43%), Gaps = 28/164 (17%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66
            +E+++ Y F   +LL  A TH S   ++ +   Y+RLEFLGD ++ ++    LF  F   
Sbjct: 1214 IEEKLSYRFRYPTLLGSAFTHPSYPSAWAKVPCYQRLEFLGDSLIDMVCVEDLFARFPDR 1273

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ---------- 115
                L+    ++VS +    +A +L L + ++  S+ L+  +  +   IQ          
Sbjct: 1274 DPQWLTEHKMAMVSNKFLGALAVKLGLHTHLKYFSAPLQSQITQYAEEIQTAEGESEGAV 1333

Query: 116  -------------ADVVESLIAALYLDG--GIEVAGTFVDKYWK 144
                          D+VE+ + A+++D     EV   F   Y K
Sbjct: 1334 DYWTVTKDPPKCLPDMVEAYVGAVFVDSDFNFEVIERFFRDYIK 1377


>gi|309800534|ref|ZP_07694685.1| ribonuclease III [Streptococcus infantis SK1302]
 gi|308115845|gb|EFO53370.1| ribonuclease III [Streptococcus infantis SK1302]
          Length = 83

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 4/61 (6%)

Query: 7  STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62
          S L+      F ++SLLE A TH+S ++ ++       ERLEFLGD +L LLIS  LF  
Sbjct: 6  SVLQDSFELVFTDKSLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLFKK 65

Query: 63 F 63
          +
Sbjct: 66 Y 66


>gi|225684610|gb|EEH22894.1| dicer [Paracoccidioides brasiliensis Pb03]
          Length = 1415

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 1/77 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            +  +E  +GY F  +  L +A TH S   S   SY+RLEFLGD IL  +I   +FN   +
Sbjct: 1128 FRDIESLVGYIFNKKVFLAQAFTHPSNPGSTM-SYQRLEFLGDSILDHIIVDHIFNSPRN 1186

Query: 66   AKEGELSVRFNSLVSAE 82
             +  ++ +   SL +A+
Sbjct: 1187 FQHVDMHLMRASLANAD 1203



 Score = 37.7 bits (86), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 48/111 (43%), Gaps = 20/111 (18%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
            +Y+R+EFLGD IL    S  L        EG LS   + +VS +  S  A E  L  FI 
Sbjct: 977  NYQRIEFLGDSILKFHTSLQLLAANPIWHEGLLSNAKDEVVSNKRLSYAAIETGLDKFIF 1036

Query: 99   VS------------------SDLRKDVCSFMTSIQADVVESLIAALYLDGG 131
            +                    D+ +   S  T   ADV+E+L+ A  +DGG
Sbjct: 1037 MDIFTGVKWRPRYNKAHVEEQDIPRREMS--TKTLADVIEALLGAATIDGG 1085


>gi|258614465|ref|ZP_05712235.1| ribonuclease III [Enterococcus faecium DO]
          Length = 97

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 4/68 (5%)

Query: 9  LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
          L++     F + +LLE+A THSS  + ++       ERLEFLGD +L L++S  LF  + 
Sbjct: 9  LKENYNIVFHDLNLLEQAFTHSSYVNEHRNLQLSDNERLEFLGDAVLELMVSQYLFRLYP 68

Query: 65 SAKEGELS 72
             EG+L+
Sbjct: 69 HLPEGKLT 76


>gi|226286856|gb|EEH42369.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
          Length = 1450

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 1/77 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            +  +E  +GY F  +  L +A TH S   S   SY+RLEFLGD IL  +I   +FN   +
Sbjct: 1128 FRDIESLVGYIFNKKVFLAQAFTHPSNPGSTM-SYQRLEFLGDSILDHIIVDHIFNSPRN 1186

Query: 66   AKEGELSVRFNSLVSAE 82
             +  ++ +   SL +A+
Sbjct: 1187 FQHVDMHLMRASLANAD 1203



 Score = 37.7 bits (86), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 48/111 (43%), Gaps = 20/111 (18%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
            +Y+R+EFLGD IL    S  L        EG LS   + +VS +  S  A E  L  FI 
Sbjct: 977  NYQRIEFLGDSILKFHTSLQLLAANPIWHEGLLSNAKDEVVSNKRLSYAAIETGLDKFIF 1036

Query: 99   VS------------------SDLRKDVCSFMTSIQADVVESLIAALYLDGG 131
            +                    D+ +   S  T   ADV+E+L+ A  +DGG
Sbjct: 1037 MDIFTGVKWRPRYNKAHVEEQDIPRREMS--TKTLADVIEALLGAATIDGG 1085


>gi|322702026|gb|EFY93774.1| Dicer-like protein 1 [Metarhizium acridum CQMa 102]
          Length = 1524

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 2/123 (1%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            +E  IGY F +  LL  A  H S  +  +  +Y+RLEFLGD +L + I   LF  +  A 
Sbjct: 1248 VEGSIGYKFRSPKLLRSAFKHPSYPYEPELPNYQRLEFLGDALLDVAIVDFLFRRYPLAD 1307

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSFMTSIQADVVESLIAAL 126
               L+    ++ S    S +  EL L   I    S +   +  F+  I+   +++    L
Sbjct: 1308 PQWLTEHKMAMASNHFFSFLCVELGLHRHILSTGSSMMGHIAGFVEQIEKAKLQTEDGVL 1367

Query: 127  YLD 129
             LD
Sbjct: 1368 QLD 1370


>gi|326475978|gb|EGD99987.1| hypothetical protein TESG_07315 [Trichophyton tonsurans CBS 112818]
          Length = 1435

 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 14/105 (13%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
            S +E  I Y+F  ++LL  +L+H S   S + +Y+RLEFLGD IL  +++  LF      
Sbjct: 1154 SKIEPLIDYSFTKKALLATSLSHPSNLIS-RMTYQRLEFLGDSILDNIVTRALFRCKKEI 1212

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFI--RVSSDL-RKDVC 108
               ++ +   +LV+A          D  +F+    S+D+ R+DVC
Sbjct: 1213 PHQDMHLIRTALVNA----------DFLAFLCMNTSTDVTREDVC 1247



 Score = 43.9 bits (102), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 55/136 (40%), Gaps = 22/136 (16%)

Query: 16   AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
             F N  L+  A+T +S       +Y+RLEFLGD  L L  S  L        EG LS + 
Sbjct: 977  GFQNIQLVLTAITATSARED--TNYQRLEFLGDSALKLHASMQLLAEHPLWHEGILSKKK 1034

Query: 76   NSLVSAETCSQVARELDLASFIRVSSDL--------------------RKDVCSFMTSIQ 115
            +S+VS     + A +  L  FI  +                        K      T   
Sbjct: 1035 DSIVSNSRLWKAAVDTGLDQFILTTCFTGAKWRPLYNSTYADNAGKIGEKSTRELSTKTL 1094

Query: 116  ADVVESLIAALYLDGG 131
            ADVVESLI A  +DGG
Sbjct: 1095 ADVVESLIGAAIIDGG 1110


>gi|224613121|dbj|BAH24228.1| dsRNA-specific ribonuclease RNaseIII [Paulownia witches'-broom
           phytoplasma]
          Length = 157

 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 5/136 (3%)

Query: 88  ARELDLASFIRVS-SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQR 146
           A+ ++L +++ +   +  KD  +   SI AD  E+L  A+YLD G   A           
Sbjct: 7   AQNIELQNYLLLGKGEKNKDFNA--KSIMADTFEALFGAIYLDLGYLTAKKVFHNIVLPH 64

Query: 147 ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206
             K+  +  D KT+LQE   ++     +YK+    GP H  +F   V +       G   
Sbjct: 65  LAKT-IYIIDFKTQLQEIVQSEKKAI-QYKIVQEQGPAHSKKFVAEVYLEKNLLGTGEGS 122

Query: 207 SKRAAEQVAAAEVLKR 222
           +K+AAEQ AA + L +
Sbjct: 123 TKKAAEQKAAHQALSK 138


>gi|145517933|ref|XP_001444844.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|74830355|emb|CAI39054.1| Ribonuclease with two RNaseIII domains [Paramecium tetraurelia]
 gi|124412277|emb|CAK77447.1| unnamed protein product [Paramecium tetraurelia]
          Length = 632

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 15/122 (12%)

Query: 19  NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           N  + E+A+  SS +  ++ +YE LE LGD +L  +I+  +F  +    EGE++   + L
Sbjct: 340 NYQVPEEAIVTSSFN--FKRNYENLEVLGDSVLKYVITADIFKQYKLLDEGEMTSLRSRL 397

Query: 79  VSAETCSQVARELDLASFI--------RVSSDLRKDVCS-----FMTSIQADVVESLIAA 125
           +     +Q+  +L L  FI        ++ + L  D+ S        S +AD+ E++I  
Sbjct: 398 IMNTFLAQLFEQLGLEQFIINQDLHFKQIKNPLVNDIISSENKQLQISQKADIYEAIIGG 457

Query: 126 LY 127
           ++
Sbjct: 458 VF 459


>gi|315051166|ref|XP_003174957.1| hypothetical protein MGYG_02485 [Arthroderma gypseum CBS 118893]
 gi|311340272|gb|EFQ99474.1| hypothetical protein MGYG_02485 [Arthroderma gypseum CBS 118893]
          Length = 1425

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 14/109 (12%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
            S +E  I Y+F  R+LL  +L+H S   S   +Y+RLEFLGD IL  +++  LF      
Sbjct: 1143 SKIEPLIDYSFTKRALLAASLSHPSNLISGM-TYQRLEFLGDSILDNVVTRALFRCDKEI 1201

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFI--RVSSDLRK-DVCSFMT 112
               ++ +   +LV+A          D  +F+  + S+D R+ DVC+  T
Sbjct: 1202 PHQDMHLIRTALVNA----------DFLAFLCMKTSTDERREDVCASPT 1240



 Score = 44.7 bits (104), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 63/145 (43%), Gaps = 24/145 (16%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
            +T+   IG  F +  L+  A+T +S   +   +Y+RLEFLGD  L L  S  L       
Sbjct: 959  NTILSSIG--FKDIKLVLTAITATSAREN--TNYQRLEFLGDSALKLHASMQLLADHPIW 1014

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFI--------------------RVSSDLRKD 106
             EG LS + +S+VS     + A +  L  FI                     V +  R+ 
Sbjct: 1015 HEGILSKKKDSIVSNSRLWKAAVDTGLDRFILTTCFTGAKWRPLYNSTYRHNVGTARREQ 1074

Query: 107  VCSFMTSIQADVVESLIAALYLDGG 131
                 T   ADVVESLI A  +DGG
Sbjct: 1075 TRELSTKTLADVVESLIGAAIVDGG 1099


>gi|326485005|gb|EGE09015.1| dicer-like protein 2 [Trichophyton equinum CBS 127.97]
          Length = 1417

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 14/105 (13%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
            S +E  I Y+F  ++LL  +L+H S   S + +Y+RLEFLGD IL  +++  LF      
Sbjct: 1136 SKIEPLIDYSFTKKALLATSLSHPSNLIS-RMTYQRLEFLGDSILDNIVTRALFRCKKEI 1194

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFI--RVSSDL-RKDVC 108
               ++ +   +LV+A          D  +F+    S+D+ R+DVC
Sbjct: 1195 PHQDMHLIRTALVNA----------DFLAFLCMNTSTDVTREDVC 1229



 Score = 42.7 bits (99), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 49/123 (39%), Gaps = 20/123 (16%)

Query: 29   HSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVA 88
             SS S     +Y+RLEFLGD  L L  S  L        EG LS + +S+VS     + A
Sbjct: 970  QSSTSAREDTNYQRLEFLGDSALKLHASMQLLAEHPLWHEGILSKKKDSIVSNSRLWKAA 1029

Query: 89   RELDLASFIRVSSDL--------------------RKDVCSFMTSIQADVVESLIAALYL 128
             +  L  FI  +                        K      T   ADVVESLI A  +
Sbjct: 1030 VDTGLDQFILTTCFTGAKWRPLYNSTYADNAGKIGEKSTRELSTKTLADVVESLIGAAII 1089

Query: 129  DGG 131
            DGG
Sbjct: 1090 DGG 1092


>gi|302502160|ref|XP_003013071.1| RNA helicase/RNAse III, putative [Arthroderma benhamiae CBS 112371]
 gi|291176633|gb|EFE32431.1| RNA helicase/RNAse III, putative [Arthroderma benhamiae CBS 112371]
          Length = 1490

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 14/105 (13%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
            S +E  I Y+F  ++LL  +L+H S   S   +Y+RLEFLGD IL  +++  LF      
Sbjct: 1209 SKIEPLIDYSFTKKALLAASLSHPSNPISGM-TYQRLEFLGDSILDNIVTRALFRCKKEI 1267

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFIRVSS---DLRKDVC 108
               ++ +   +LV+A          D  +F+ +++   + R+DVC
Sbjct: 1268 PHQDMHLIRTALVNA----------DFLAFLCMNTSTDETREDVC 1302



 Score = 42.4 bits (98), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 54/136 (39%), Gaps = 22/136 (16%)

Query: 16   AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
             F N  L+  A+T +S       +Y+RLEFLGD  L L  S  L        EG LS + 
Sbjct: 1032 GFQNIQLVLTAITATSARED--TNYQRLEFLGDSALKLHASMQLLAEHPLWHEGILSKKK 1089

Query: 76   NSLVSAETCSQVARELDLASFIRVSSDL--------------------RKDVCSFMTSIQ 115
            +S+VS     + A +  L  FI  +                        K      T   
Sbjct: 1090 DSIVSNSRLWKAAVDTGLDQFILTTCFTGAKWRPLYNSTYTDNAGKIGEKSTRKLSTKTL 1149

Query: 116  ADVVESLIAALYLDGG 131
            ADVVESLI    +DGG
Sbjct: 1150 ADVVESLIGVAIIDGG 1165


>gi|302694007|ref|XP_003036682.1| hypothetical protein SCHCODRAFT_102832 [Schizophyllum commune H4-8]
 gi|300110379|gb|EFJ01780.1| hypothetical protein SCHCODRAFT_102832 [Schizophyllum commune H4-8]
          Length = 1489

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 75/165 (45%), Gaps = 30/165 (18%)

Query: 1    MSALRYSTL---EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIST 57
            +S LR  T+   +  IG       LL  ALTH++ S S   +YER+EFLGD +L   +  
Sbjct: 1205 VSFLRPGTIDGVQSVIGQKLNKPELLALALTHANNS-SPLGNYERIEFLGDALLDFQVVE 1263

Query: 58   LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSFMTSIQ- 115
             ++  +       L++  +++V     + +  E  L   + + S  +++ + +++T++Q 
Sbjct: 1264 YVYRKYTQQPPSVLTLLKSAMVGNSPLAAICAESGLYRHLHQKSHQIQQSINTYLTALQK 1323

Query: 116  ------------------------ADVVESLIAALYLDGGIEVAG 136
                                    +D+VES++ A+Y+   +E  G
Sbjct: 1324 AKQKEYAAADDDLRERGQYWFDALSDIVESIVGAIYISDDLEWTG 1368



 Score = 39.3 bits (90), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 40/79 (50%), Gaps = 7/79 (8%)

Query: 22   LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF---NHFDSAKEGELSVRFNSL 78
            LL  ALT  + S  +  +YERLE  GD  L  L S  LF   +H DS  EG+L      L
Sbjct: 996  LLHAALT--TPSAGFDRNYERLELYGDAFLKYLASLHLFVMSHHNDS--EGKLHAARRPL 1051

Query: 79   VSAETCSQVARELDLASFI 97
            +S +   + +  L L SF+
Sbjct: 1052 ISNQKLMECSLALGLPSFV 1070


>gi|300868242|ref|ZP_07112873.1| hypothetical protein OSCI_3600020 [Oscillatoria sp. PCC 6506]
 gi|300333766|emb|CBN58057.1| hypothetical protein OSCI_3600020 [Oscillatoria sp. PCC 6506]
          Length = 328

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 9/113 (7%)

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--------RDAKTELQEWAHAKFG 170
           +E L  A++LD GI+    F++  +++   +   F          D+K   QEW  A   
Sbjct: 209 LEFLGDAVFLDSGIDSVREFIEPLFEKAIKEPAAFNFNLESKNFVDSKNRFQEWVQANSD 268

Query: 171 VTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            TP   VT  +G   H P +   V +      +G   SK+ AE+ AA + L R
Sbjct: 269 NTPPKYVTIHAGGAPHKPEYLAKVYVGEKLYGEGKGSSKKEAEKNAAEDALAR 321


>gi|154150151|ref|YP_001403769.1| ribonuclease III [Candidatus Methanoregula boonei 6A8]
 gi|153998703|gb|ABS55126.1| ribonuclease III [Methanoregula boonei 6A8]
          Length = 196

 Score = 45.1 bits (105), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 15/131 (11%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLL 59
           LE+ IGY F  +  L +ALTHS+ ++           Q++Y     LGD +L    S +L
Sbjct: 13  LERIIGYHFFEQQHLIRALTHSAYANEVIQKNRICLTQDAY---STLGDAVLK--TSLIL 67

Query: 60  FNHFDSAKE-GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           F      +E G ++     L    + +Q+ R L +  F+R+    +    S   +I AD 
Sbjct: 68  FLMEKGLQEKGAITRAKEQLEDNASLAQIGRRLKIRRFVRLGRGEKDLWKSGEDTILADT 127

Query: 119 VESLIAALYLD 129
           VE++I A+YLD
Sbjct: 128 VEAIIGAVYLD 138


>gi|328773741|gb|EGF83778.1| hypothetical protein BATDEDRAFT_85615 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 1746

 Score = 45.1 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 27/154 (17%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            +++++ Y F N  LL  AL   +  +  +  +ERLEFLGD I+ +L++   + H+  A  
Sbjct: 1484 VQQKLSYNFHNPELLLIALM--TPFYFVKSKFERLEFLGDAIMDILVARYFYRHYKHADP 1541

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVSSDL----RKDVCSFMTSIQ--------- 115
              LS    + V      ++   L L   +  SS L    ++ +  +   IQ         
Sbjct: 1542 CSLSKMIQATVCKPAFCKILVSLKLHEHLLQSSQLSQHSKEAIVLYANYIQNSHSQHAFK 1601

Query: 116  ------------ADVVESLIAALYLDGGIEVAGT 137
                         DV E ++AA+++D G  +  T
Sbjct: 1602 QADKAIDGPKVLCDVFEVIVAAIFIDTGYNLERT 1635



 Score = 44.7 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 24/121 (19%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
            +YERLE LGD++L   ++  L + + S + G+LS   + LVS +   ++A++  L   + 
Sbjct: 1314 NYERLETLGDKVLKFGVAHYLHSSYQSYEVGQLSTILSGLVSNKNLFEIAQQHSLTGMLN 1373

Query: 99   V----SSDLRKDVCSFMTSI--------------------QADVVESLIAALYLDGGIEV 134
                 S+        F T I                    Q+D +E+L+ A +L+ G+E 
Sbjct: 1374 TAPFQSNSWTPPSFCFETRIFVAPTASVDCLDNRVFCGKKQSDFIEALLGAYFLECGVEA 1433

Query: 135  A 135
            A
Sbjct: 1434 A 1434


>gi|296812107|ref|XP_002846391.1| dicer-like protein 2 [Arthroderma otae CBS 113480]
 gi|238841647|gb|EEQ31309.1| dicer-like protein 2 [Arthroderma otae CBS 113480]
          Length = 1437

 Score = 45.1 bits (105), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
            S +E  I Y+F  ++LL  +L+H S   S   +Y+RLEFLGD IL  +++  LF      
Sbjct: 1156 SKIEPLIDYSFTKKALLATSLSHPSNPISGM-TYQRLEFLGDSILDSIVTRALFRSNKEI 1214

Query: 67   KEGELSVRFNSLVSAE 82
               ++ +   +LV+A+
Sbjct: 1215 PHQDMHLMRTALVNAD 1230



 Score = 37.4 bits (85), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 57/139 (41%), Gaps = 28/139 (20%)

Query: 16   AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
             F +  L+  A++ SS   S   +Y+RLEFLGD  L L  S  L        EG LS + 
Sbjct: 979  GFKDIQLVLTAISASSARES--TNYQRLEFLGDSALKLHTSMQLLVDHPFWHEGLLSHKK 1036

Query: 76   NSLVSAETCSQVARELDLASFI-----------------------RVSSDLRKDVCSFMT 112
              ++S     +   E  L  FI                       RV  +  +++    T
Sbjct: 1037 GFIISNSRLWKATIETGLDRFILTACFTGAKWRPLYNSTYTANAGRVGKNSTREIS---T 1093

Query: 113  SIQADVVESLIAALYLDGG 131
               ADVVE+LI A  +DGG
Sbjct: 1094 KTLADVVEALIGAAIVDGG 1112


>gi|313906469|ref|ZP_07839804.1| ribonuclease III [Eubacterium cellulosolvens 6]
 gi|313468696|gb|EFR64063.1| ribonuclease III [Eubacterium cellulosolvens 6]
          Length = 365

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 91/221 (41%), Gaps = 40/221 (18%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDS 65
           + ++ +IGY F N  LL +A    S +     E+ E LEF+GD +L   +   L   + +
Sbjct: 9   TVVQNQIGYEFQNPLLLRQAFVRKSYTEENGGENNEVLEFIGDTVLSTAVMRYLTEKYGN 68

Query: 66  AK----------------------EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL 103
           A                       EGELS     L   +T ++   EL    F+ +    
Sbjct: 69  APSFKRPIWPNTPQKPMDFHCEKTEGELSRLKQKLTEKKTLARKIDELGFDKFLIMG--- 125

Query: 104 RKDVCSFMT---SIQADVVESLIAALYLDGGIEVAG--TFVDKYWKQRALKSGKFRRDAK 158
           + D+   MT   S++ D+ E+++ A+ LD   +     + V+      ++ +     D  
Sbjct: 126 KGDIGQNMTKQASVKEDLFEAILGAVALDSSFDYKKIQSVVEIMLHPDSIVNDGEEADYV 185

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGP------DHDPRFTVVV 193
             + EW +A FG  P ++  +R  P       ++P   V+V
Sbjct: 186 QLIYEWDNA-FGAIPYFR--YRQEPYGISLSPYNPEVIVIV 223


>gi|50312305|ref|XP_456185.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49645321|emb|CAG98893.1| KLLA0F24816p [Kluyveromyces lactis]
          Length = 478

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 5/118 (4%)

Query: 16  AFANRSLLEKAL--THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
            F ++S++   L  T   I  S+ E   RLEFLGD IL   ++T+++N F    EG+LS 
Sbjct: 207 VFIHKSMINDKLYLTDQEIIRSHNE---RLEFLGDSILNTTMTTIIYNKFPHFDEGQLSQ 263

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131
               L++ E   + +        ++  +    D       + ADV E+ I  L  D G
Sbjct: 264 LRMRLINNELLKEWSFLYKFPDELKTHNVKPDDNKDGKQKLYADVFEAYIGGLVEDNG 321


>gi|302661784|ref|XP_003022555.1| RNA helicase/RNAse III, putative [Trichophyton verrucosum HKI 0517]
 gi|291186507|gb|EFE41937.1| RNA helicase/RNAse III, putative [Trichophyton verrucosum HKI 0517]
          Length = 1468

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 14/105 (13%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
            S +E  I Y+F  ++LL  +L+H S   S   +Y+RLEFLGD IL  +++  LF      
Sbjct: 1187 SKIEPLIDYSFTKKALLAASLSHPSNPISGM-TYQRLEFLGDSILDNIVTRALFRCKREI 1245

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFIRVSS---DLRKDVC 108
               ++ +   +LV+A          D  +F+ +++   + R+DVC
Sbjct: 1246 PHQDMHLIRTALVNA----------DFLAFLCMNTSTDETREDVC 1280



 Score = 42.4 bits (98), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 54/136 (39%), Gaps = 22/136 (16%)

Query: 16   AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
             F N  L+  A+T +S       +Y+RLEFLGD  L L  S  L        EG LS + 
Sbjct: 1010 GFQNIQLVLTAITATSARE--DTNYQRLEFLGDSALKLHASMQLLAEHPLWHEGILSKKK 1067

Query: 76   NSLVSAETCSQVARELDLASFIRVSSDL--------------------RKDVCSFMTSIQ 115
            +S+VS     + A +  L  FI  +                        K      T   
Sbjct: 1068 DSIVSNSRLWKAAVDTGLDQFILTTCFTGAKWRPLYNSTYTNNAGKIGEKSTRKLSTKTL 1127

Query: 116  ADVVESLIAALYLDGG 131
            ADVVESLI    +DGG
Sbjct: 1128 ADVVESLIGVAIIDGG 1143


>gi|167046018|gb|ABZ10540.1| dicer-like protein A [Placozoa sp. DMJ-2008]
          Length = 351

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 29/52 (55%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            E+ +GY F N   L  A THSS       +YE+LEF+GD IL  L+   LF
Sbjct: 185 FEENLGYKFINIDYLILAFTHSSSEFGDSFNYEKLEFVGDSILNYLVIKYLF 236


>gi|167046016|gb|ABZ10539.1| dicer-like protein A [Trichoplax adhaerens]
          Length = 351

 Score = 44.7 bits (104), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 29/52 (55%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            E+ +GY F N   L  A THSS       +YE+LEF+GD IL  L+   LF
Sbjct: 185 FEENLGYKFINIDYLILAFTHSSSEFGDSFNYEKLEFVGDSILNYLVIKYLF 236


>gi|242807890|ref|XP_002485049.1| nucleolar RNAse III, putative [Talaromyces stipitatus ATCC 10500]
 gi|218715674|gb|EED15096.1| nucleolar RNAse III, putative [Talaromyces stipitatus ATCC 10500]
          Length = 371

 Score = 44.7 bits (104), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 11/140 (7%)

Query: 19  NRSLLEKALTHSSI-----SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           N SL     TH        +   +++Y+RLE LGD  + ++ + L++  F     G +S 
Sbjct: 120 NASLERAVFTHPGAPVNVAAEGMEQNYDRLEVLGDAYVEVIATRLIWEQFKDMPAGRMSQ 179

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSS--DLRKDVCSFMTSIQADVVESLIAALYLDG- 130
               LV  ET +  A +      + VS+  D R     ++  I+ DV E+ +AA+ L   
Sbjct: 180 VREDLVKNETLAGFATQYGFDKRVSVSALEDQRAQTKRWL-KIRGDVFEAYVAAVILSNP 238

Query: 131 --GIEVAGTFVDKYWKQRAL 148
             G ++   ++ + W  R L
Sbjct: 239 LHGFDIVEKWLRELWLPRLL 258


>gi|302412551|ref|XP_003004108.1| ribonuclease [Verticillium albo-atrum VaMs.102]
 gi|261356684|gb|EEY19112.1| ribonuclease [Verticillium albo-atrum VaMs.102]
          Length = 426

 Score = 44.7 bits (104), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 6/127 (4%)

Query: 16  AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
           A  +  L     TH ++      +YERLE+LGD    ++ S+LLF  F     G+LS   
Sbjct: 159 AICDPKLETAVFTHYTVGPGL--NYERLEWLGDAYAEIISSSLLFRTFGGFSSGKLSQLR 216

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL---DGGI 132
             L+      Q + +  L   +R   +++     +   +  DV ES +AA+ L   + G+
Sbjct: 217 ELLICNANLGQYSAQYGLVDRVRAPEEVKASKEKW-KKVPGDVFESYVAAVILSDPENGL 275

Query: 133 EVAGTFV 139
           + AG ++
Sbjct: 276 QRAGEWL 282


>gi|255720468|ref|XP_002556514.1| KLTH0H15180p [Lachancea thermotolerans]
 gi|238942480|emb|CAR30652.1| KLTH0H15180p [Lachancea thermotolerans]
          Length = 494

 Score = 44.7 bits (104), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 43/92 (46%), Gaps = 3/92 (3%)

Query: 41  ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
           ERLEFLGD IL   I+ +L+N F    EG+LS     L+S E   + +        +R +
Sbjct: 225 ERLEFLGDSILNTTITMILYNKFPHLSEGQLSKLRMKLISNERLKKWSFLYKFNEKLRTN 284

Query: 101 SDLRKDVCSFMTSIQ---ADVVESLIAALYLD 129
            D   +   F    Q   ADV E+ I  L  D
Sbjct: 285 LDKTCENNDFKHGKQKLYADVFEAYIGGLIED 316


>gi|158706522|sp|Q4WVE3|DCL1_ASPFU RecName: Full=Dicer-like protein 1; Includes: RecName:
            Full=Endoribonuclease dcl1; Includes: RecName:
            Full=ATP-dependent helicase dcl1
          Length = 1537

 Score = 44.7 bits (104), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 4/123 (3%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65
            +E+ +GY F    LL  A+TH S+  ++      Y+RLEFLGD +L ++    LF  F  
Sbjct: 1256 VEEELGYHFTYPRLLASAITHPSLPSTWGYRVPCYQRLEFLGDSLLDMVCVEDLFRRFPD 1315

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFMTSIQADVVESLIA 124
                 LS    ++VS +    ++ +L     I   S+ L+  +  ++  I+    ES  A
Sbjct: 1316 RDPQWLSEHKMAMVSNKFLGALSVKLGFHRRIMAFSNPLQAQITHYVEEIETAQAESQGA 1375

Query: 125  ALY 127
              Y
Sbjct: 1376 VDY 1378


>gi|327303976|ref|XP_003236680.1| dicer-like protein 2 [Trichophyton rubrum CBS 118892]
 gi|326462022|gb|EGD87475.1| dicer-like protein 2 [Trichophyton rubrum CBS 118892]
          Length = 1460

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 14/105 (13%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
            S +E  I Y+F  ++LL  +L+H S   S   +Y+RLEFLGD IL  +++  LF      
Sbjct: 1179 SKVEPLIEYSFTKKALLAASLSHPSNPISGM-TYQRLEFLGDSILDNIVTRALFRCKKEI 1237

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFIRVSS---DLRKDVC 108
               ++ +   +LV+A          D  +F+ +++   + R+DVC
Sbjct: 1238 PHQDMHLIRTALVNA----------DFLAFLCMNTSTDETREDVC 1272



 Score = 43.9 bits (102), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 55/136 (40%), Gaps = 22/136 (16%)

Query: 16   AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
             F N  L+  A+T +S       +Y+RLEFLGD  L L  S  L        EG LS + 
Sbjct: 1002 GFQNIQLVLTAITAASAREDI--NYQRLEFLGDSALKLHASMQLLAEHPLWHEGILSKKK 1059

Query: 76   NSLVSAETCSQVARELDLASFIRVSSDL--------------------RKDVCSFMTSIQ 115
            +S+VS     + A +  L  FI  +                        K      T   
Sbjct: 1060 DSIVSNSRLWKAAVDTGLDQFILTTCFTGAKWRPLYNSTYTNNAGKIGEKSTRELSTKTL 1119

Query: 116  ADVVESLIAALYLDGG 131
            ADVVESLI A  +DGG
Sbjct: 1120 ADVVESLIGAAIIDGG 1135


>gi|302308935|ref|NP_986085.2| AFR538Cp [Ashbya gossypii ATCC 10895]
 gi|299790864|gb|AAS53909.2| AFR538Cp [Ashbya gossypii ATCC 10895]
          Length = 485

 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 9/121 (7%)

Query: 17  FANRSLLEKAL--THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
           F +RSL    L    + + +S+ E   RLEFLGD IL   ++ +++N F    EG LS  
Sbjct: 236 FTHRSLTNDKLYLDEAQMINSHNE---RLEFLGDSILNTTMTMIIYNKFPGFNEGRLSQL 292

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDL----RKDVCSFMTSIQADVVESLIAALYLDG 130
              L++ +   + +    L S +R + ++      +V +    + ADV E+ I  L  + 
Sbjct: 293 RTKLINNDRLKEWSFMYQLPSKLRTNIEMFNGTTHEVSNGKLKLYADVFEAYIGGLVEED 352

Query: 131 G 131
           G
Sbjct: 353 G 353


>gi|83772763|dbj|BAE62891.1| unnamed protein product [Aspergillus oryzae]
          Length = 1374

 Score = 44.3 bits (103), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 21/140 (15%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66
            +E+++GY F    LL  A TH S   ++ +   Y+RLEFLGD +L ++    LF  +   
Sbjct: 1156 VEEKLGYRFKYPRLLHSAFTHPSYPSTWAKVPCYQRLEFLGDSLLDMVCVDDLFYRYPDK 1215

Query: 67   K-----EGELSVRF-------------NSLVSAETCSQVARELDLASFIR-VSSDLRKDV 107
                  E ++SVR               ++VS +    +A +L L + +R  S+ L+  +
Sbjct: 1216 DPQWLTEHKVSVRLFVSTKHLLTITLQMAMVSNKFLGALAVKLGLHTHLRHFSNPLQSQI 1275

Query: 108  CSFMTSIQADVVESLIAALY 127
              +   IQA   ES  A  Y
Sbjct: 1276 THYAEEIQAAENESQGAVDY 1295


>gi|134084339|emb|CAK48679.1| unnamed protein product [Aspergillus niger]
          Length = 1531

 Score = 44.3 bits (103), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66
            +E+++ Y F   +LL  A TH S   ++ +   Y+RLEFLGD ++ ++    LF  F   
Sbjct: 1236 IEEKLSYRFRYPTLLGSAFTHPSYPSAWAKVPCYQRLEFLGDSLIDMVCVEDLFARFPDR 1295

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ 115
                L+    ++VS +    +A +L L + ++  S+ L+  +  +   IQ
Sbjct: 1296 DPQWLTEHKMAMVSNKFLGALAVKLGLHTHLKYFSAPLQSQITQYAEEIQ 1345


>gi|119478976|ref|XP_001259517.1| RNase3 domain protein [Neosartorya fischeri NRRL 181]
 gi|158706438|sp|A1DE13|DCL1_NEOFI RecName: Full=Dicer-like protein 1; Includes: RecName:
            Full=Endoribonuclease dcl1; Includes: RecName:
            Full=ATP-dependent helicase dcl1
 gi|119407671|gb|EAW17620.1| RNase3 domain protein [Neosartorya fischeri NRRL 181]
          Length = 1538

 Score = 44.3 bits (103), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 4/123 (3%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65
            +E+ +GY F    LL  A+TH S+  ++      Y+RLEFLGD +L ++    LF  F  
Sbjct: 1257 VEEELGYHFTYPRLLASAITHPSLPSTWGYRVPCYQRLEFLGDSLLDMVCVEDLFRRFPD 1316

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFMTSIQADVVESLIA 124
                 L+    ++VS +    ++ +L     I   S+ L+  +  ++  I++   ES  A
Sbjct: 1317 RDPQWLTEHKMAMVSNKFLGALSVKLGFHRRIMAFSNPLQAQITHYVEEIESAQAESRGA 1376

Query: 125  ALY 127
              Y
Sbjct: 1377 VDY 1379


>gi|195995859|ref|XP_002107798.1| hypothetical protein TRIADDRAFT_51673 [Trichoplax adhaerens]
 gi|190588574|gb|EDV28596.1| hypothetical protein TRIADDRAFT_51673 [Trichoplax adhaerens]
          Length = 1418

 Score = 44.3 bits (103), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 29/52 (55%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
             E+ +GY F N   L  A THSS       +YE+LEF+GD IL  L+   LF
Sbjct: 1225 FEENLGYKFINIDYLILAFTHSSSEFGDSFNYEKLEFVGDSILNYLVIKYLF 1276


>gi|148985144|ref|ZP_01818383.1| ribonuclease III [Streptococcus pneumoniae SP3-BS71]
 gi|147922589|gb|EDK73707.1| ribonuclease III [Streptococcus pneumoniae SP3-BS71]
          Length = 79

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 14/63 (22%)

Query: 7  STLEKRIGYAFANRSLLEKALTHSS---------ISHSYQESYERLEFLGDRILGLLIST 57
          + L+      FA+++LLE A TH+S         ISH+     ERLEFLGD +L LLIS 
Sbjct: 6  TVLKNHFAIEFADKNLLETAFTHTSYANEHRLLKISHN-----ERLEFLGDAVLQLLISE 60

Query: 58 LLF 60
           L+
Sbjct: 61 YLY 63


>gi|121807816|sp|Q2VF18|DCL2_CRYPA RecName: Full=Dicer-like protein 2; Includes: RecName:
            Full=Endoribonuclease DCL-2; Includes: RecName:
            Full=ATP-dependent helicase DCL-2
 gi|77632776|gb|ABB00357.1| dicer-like protein 2 [Cryphonectria parasitica]
          Length = 1451

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 63/139 (45%), Gaps = 24/139 (17%)

Query: 17   FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
             +N S+L +A+   S      E+YER+EFLGD IL   I+  L        EG LS+  +
Sbjct: 981  ISNVSMLVEAICAKSARTP--ENYERIEFLGDSILKTCITVNLAATKLHLPEGILSLMKD 1038

Query: 77   SLVSAETCSQVARELDLASFIRVS------------SDLRKD--------VCSFMTSIQA 116
             LVS     + A + +L  F+               SDL K         + S  T   A
Sbjct: 1039 RLVSNARLCRAACDAELDQFLVTQQLVTKGWQPPYMSDLAKQDQEPESKRILSPKT--LA 1096

Query: 117  DVVESLIAALYLDGGIEVA 135
            DVVE+LI   ++DGG+  A
Sbjct: 1097 DVVEALIGVSFVDGGLPKA 1115



 Score = 43.1 bits (100), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 45/75 (60%), Gaps = 1/75 (1%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            LE+ I Y+F  ++LL +A+TH S + S     Y+RLEF+GD IL  +I   +F    + +
Sbjct: 1156 LEQLIEYSFCEKALLVEAVTHPSYNVSGTVACYDRLEFIGDAILDYIIVEEVFALEPALE 1215

Query: 68   EGELSVRFNSLVSAE 82
              ++ +   +LV+A+
Sbjct: 1216 NWQMHLLRTALVNAD 1230


>gi|196229195|ref|ZP_03128060.1| Ribonuclease III [Chthoniobacter flavus Ellin428]
 gi|196226427|gb|EDY20932.1| Ribonuclease III [Chthoniobacter flavus Ellin428]
          Length = 152

 Score = 44.3 bits (103), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 3/116 (2%)

Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFG 170
           S  +D  E+LI A+YLD         V    +     L+      + K  LQE   A   
Sbjct: 16  STLSDAFEALIGAMYLDSDFVTVRRIVLTESRDLLEDLEVDPPDTNPKGRLQELLQAISP 75

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           ++P Y +  +SGP+H  RF   +   G     G   SK+ AE  AA + L +E +W
Sbjct: 76  ISPTYPIVDQSGPEHQKRFVAKIVWDGKELGSGDGRSKKEAETAAARDALSKE-LW 130


>gi|321456685|gb|EFX67786.1| hypothetical protein DAPPUDRAFT_115168 [Daphnia pulex]
          Length = 216

 Score = 43.9 bits (102), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 6/81 (7%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           +E  +GY F ++  L+  LTH S + +    E  +RLE LGD++LG L+  + +    + 
Sbjct: 34  IETTLGYEFRHKENLKLPLTHISTNPNKVPSEDSDRLETLGDKLLGTLVMAICYTTCPTY 93

Query: 67  KEGELSVRFNSLVSAETCSQV 87
             GEL+    +L S  TC+  
Sbjct: 94  GAGELT----NLTSMITCNDT 110


>gi|125570782|gb|EAZ12297.1| hypothetical protein OsJ_02188 [Oryza sativa Japonica Group]
          Length = 234

 Score = 43.9 bits (102), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 18/133 (13%)

Query: 18  ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
           A R+ +E+AL         +  ++RLEFLGD  LGL  +T+ +       +G+L+V  ++
Sbjct: 19  AARAEVERALGGDEAGGRAR--HQRLEFLGDAALGLAFATIFYRDDPGLDQGDLTVLRSA 76

Query: 78  LVSAETCSQVARELDLASFIRVSSDLRKD--VCSFMTSIQ--------------ADVVES 121
            VS +  ++VA    L   +R  +   +D  V  F  S++              AD+VE+
Sbjct: 77  NVSTQKLARVAVRRRLYPLLRRYNCAPQDHEVSRFTKSVEGPYSGDPIEGPRVLADIVEA 136

Query: 122 LIAALYLDGGIEV 134
           ++ A+YLD  +++
Sbjct: 137 IVGAVYLDSKLDL 149


>gi|46132992|ref|XP_389201.1| hypothetical protein FG09025.1 [Gibberella zeae PH-1]
          Length = 1495

 Score = 43.9 bits (102), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 14   GYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDSA 66
            GY F +  LL+ A TH S ++S    +Y+RLEFLGD ++ + I   L+ +F  A
Sbjct: 1204 GYHFKSAPLLQSAFTHPSYAYSGNVPNYQRLEFLGDALIDMTIVEYLYRNFPLA 1257


>gi|47225094|emb|CAF98721.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1041

 Score = 43.9 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 16/112 (14%)

Query: 30   SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAR 89
            S I+H+     ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A+
Sbjct: 917  SRINHN-----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAK 971

Query: 90   ELDLASFIRVS--------SDLRKDVCSFMTSIQADVV---ESLIAALYLDG 130
            +L+L  F+  +        SDLR  + +   ++  + +   E  +   YL G
Sbjct: 972  KLELDRFMLYAHGPDLCRESDLRHAMANCFEALIGETLMRQEQTLCCFYLTG 1023


>gi|499371|gb|AAA21843.1| RNase III [Escherichia coli]
          Length = 45

 Score = 43.9 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 3/48 (6%)

Query: 1  MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGD 48
          M+ +  + L++++GY F ++ LL++ALTH S S  +    ERLEFLGD
Sbjct: 1  MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKHN---ERLEFLGD 45


>gi|255953957|ref|XP_002567731.1| Pc21g06890 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589442|emb|CAP95586.1| Pc21g06890 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1495

 Score = 43.5 bits (101), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 74/164 (45%), Gaps = 28/164 (17%)

Query: 11   KRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            +++GY F    LL  A TH S   ++ +   Y+RLEFLGD +L ++    LF+ F +   
Sbjct: 1217 EKVGYDFKYPRLLRSAFTHPSYPLAWAKVPCYQRLEFLGDALLDMVCVEHLFHRFPNRDP 1276

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQ------------ 115
              L+    ++VS +    +A +L L   ++  S+ L      +   IQ            
Sbjct: 1277 QWLTEHKMAMVSNKFLGALAVKLGLHLHLQHFSNPLMIQNSKYAEEIQLAESESNGEVDY 1336

Query: 116  -----------ADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL 148
                        D++E+ + A+++D G +   T ++ ++++  L
Sbjct: 1337 WLSTSDSPKCLPDMLEAYLGAIFVDSGFDF--TVIEAFFQRHIL 1378



 Score = 39.7 bits (91), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 49/116 (42%), Gaps = 22/116 (18%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
            ++YERLE LGD +L +  S  LF       E +  V    L+  +   + A EL L  +I
Sbjct: 1046 KNYERLELLGDSVLKMATSISLFAQNPDDDEYDYHVNRMCLICNKNLFKNAIELKLYEYI 1105

Query: 98   R-------------VSSDLRKDVCSFMTS---------IQADVVESLIAALYLDGG 131
            R             +S +  +D   F+ S           ADV E+LI A  L GG
Sbjct: 1106 RSRGFSRHMWYPPGLSLEYGRDHAKFIDSEGKHSLAEKTIADVCEALIGASLLSGG 1161


>gi|225457085|ref|XP_002280078.1| PREDICTED: similar to NFD2 (NUCLEAR FUSION DEFECTIVE 2); RNA
           binding / ribonuclease III [Vitis vinifera]
 gi|297733813|emb|CBI15060.3| unnamed protein product [Vitis vinifera]
          Length = 183

 Score = 43.5 bits (101), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 4/99 (4%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           +L   TL+K+IGY F +  LL +A+THSS S   +E+ + L  LG   +   +S      
Sbjct: 38  SLALETLQKQIGYTFQSIGLLRRAMTHSSFS---EENNKALSILGASTIETSVSLQYLKK 94

Query: 63  FDSAKEGELSVRFNSLVSAE-TCSQVARELDLASFIRVS 100
              A   +L+ R + +   E +C+  A  L L   IRVS
Sbjct: 95  DIEASAKDLNRRISEISQVESSCAVDAMRLGLQKVIRVS 133


>gi|322704697|gb|EFY96289.1| Dicer-like protein 1 [Metarhizium anisopliae ARSEF 23]
          Length = 1476

 Score = 43.5 bits (101), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 13   IGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71
            IGY F +  LL  A  H S  +  +  +Y+RLEFLGD +L + I   LF  +  A    L
Sbjct: 1204 IGYNFRSPKLLRSAFKHPSYPYEPELPNYQRLEFLGDALLDVAIVDFLFQRYPLADPQWL 1263

Query: 72   SVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
            +    ++ S    S +  EL L   I    S +   +  F+  I+    ++    L LD
Sbjct: 1264 TEHKMAMASNHFFSFLCVELGLHRHILSTGSSIMGHIAGFVEQIEKAKSQTEDGVLQLD 1322


>gi|145506903|ref|XP_001439412.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|74830350|emb|CAI39053.1| Ribonuclease with two RNaseIII domains [Paramecium tetraurelia]
 gi|124406596|emb|CAK72015.1| unnamed protein product [Paramecium tetraurelia]
          Length = 632

 Score = 43.5 bits (101), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 63/122 (51%), Gaps = 15/122 (12%)

Query: 19  NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           N  ++E+A+  SS   +++ +YE LE LGD +L  +++  +F  ++   EGE++   + L
Sbjct: 340 NYQVVEEAIVTSS--SNFKRNYENLELLGDSVLKYVVTVDIFRQYELLDEGEMTSLRSRL 397

Query: 79  VSAETCSQVARELDLASFI--------RVSSDLRKDVCS-----FMTSIQADVVESLIAA 125
           +     +Q+  +L L  +I        ++ + L  D+ S        S +AD+ E+++  
Sbjct: 398 IMNTFLAQLFEQLGLQHYIINQDLHFKQIRNPLVNDMISSDNKQLQISQKADIYEAIVGG 457

Query: 126 LY 127
           ++
Sbjct: 458 VF 459


>gi|242033791|ref|XP_002464290.1| hypothetical protein SORBIDRAFT_01g015670 [Sorghum bicolor]
 gi|241918144|gb|EER91288.1| hypothetical protein SORBIDRAFT_01g015670 [Sorghum bicolor]
          Length = 1385

 Score = 43.5 bits (101), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 100/254 (39%), Gaps = 60/254 (23%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQ-----ESYERLEFLGDRILGLLISTLLFNH 62
            +LE  + Y F++ SLL +ALTH S    YQ       Y+RLEFLGD +L  + +   ++ 
Sbjct: 1134 SLELMLDYNFSDPSLLLEALTHGS----YQIAGTTACYQRLEFLGDAVLDHIFTDYFYHQ 1189

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSF----------- 110
            +       L+   ++ V+    +  A +  L   I   SS L K +  +           
Sbjct: 1190 YPECTPELLTDLRSASVNNSCYAHAAVKAGLHKHILHSSSALHKKMADYLDKFEQSFSGP 1249

Query: 111  ---------MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--------SGKF 153
                     +  +  DV+ES+  A+Y+D       T  DK    R +K            
Sbjct: 1250 SHGWEAGICLPKVLGDVIESIAGAIYID-------TKNDKKVVWRKMKRLLEPLATPDTL 1302

Query: 154  RRDAKTELQEWAHA-----KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA-PAQGMDCS 207
              D   EL E+        K+ V  E +VT            V V+  G    A     +
Sbjct: 1303 EIDPVKELHEFCDPKTCSIKYTVAREDRVT---------SVAVEVQTKGTTYKATRTGLT 1353

Query: 208  KRAAEQVAAAEVLK 221
            KR A+++AA  VLK
Sbjct: 1354 KRDAKKLAAKSVLK 1367


>gi|253741929|gb|EES98787.1| Dicer [Giardia intestinalis ATCC 50581]
          Length = 750

 Score = 43.1 bits (100), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 5/93 (5%)

Query: 35  SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLA 94
           S+ + ++RLE LGD +LG +++  L   F +A  G L      LV  ET + + R L L 
Sbjct: 327 SHTDIFQRLELLGDAVLGFIVTARLLCLFPNASIGTLVELKMELVRNETLNHLTRMLGLP 386

Query: 95  SFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
               +S+ L        +   AD+ E ++ +++
Sbjct: 387 QLAEISNQLLAS-----SKTWADMYEEIVGSIF 414



 Score = 35.8 bits (81), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 10/125 (8%)

Query: 22  LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
           LL+ ALT         + Y++LE LGD  L   ++  L     +  EG L+    S  S 
Sbjct: 631 LLQLALT--------PQVYQKLELLGDAFLKCSLALHLHTRHPTLTEGALTRMRQSAESN 682

Query: 82  ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141
                + ++L  +  + V +D    +    + +  D  ES++AA+ L  G E A +FV K
Sbjct: 683 HVLGVLTKKLP-SPVLEVITDAHPGI-QPDSKVYGDTFESILAAVLLACGEEAASSFVRK 740

Query: 142 YWKQR 146
               R
Sbjct: 741 LVLPR 745


>gi|302422698|ref|XP_003009179.1| RNase3 domain-containing protein [Verticillium albo-atrum VaMs.102]
 gi|261352325|gb|EEY14753.1| RNase3 domain-containing protein [Verticillium albo-atrum VaMs.102]
          Length = 1510

 Score = 43.1 bits (100), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 65/156 (41%), Gaps = 34/156 (21%)

Query: 10   EKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            E     AF + +LL  A  H S    ++   +Y+RLEFLGD +L ++    LF  F  A 
Sbjct: 1223 EGNFDMAFKSPALLRSAFKHPSYPRQFESVPNYQRLEFLGDALLDMVCVDFLFRKFPDAD 1282

Query: 68   EGELSVRFNSLVSAETCSQVARELD----LASFIRVSSDLRKDVCSFMT----------- 112
               L+    ++VS      ++ EL     +  F  V ++  KD    +T           
Sbjct: 1283 PQWLTEHKMAMVSNHFLGSLSVELGFYRRVLHFSGVMANQIKDYVDALTHARQEAEAAAQ 1342

Query: 113  -----------SIQ------ADVVESLIAALYLDGG 131
                       ++Q      +DVVE+ I A+++D G
Sbjct: 1343 ISGVISQDYWLNVQHPPKFLSDVVEAYIGAIFVDSG 1378



 Score = 42.7 bits (99), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 68/186 (36%), Gaps = 44/186 (23%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
             +YERLEFLGD  L +  +  LF     + E E  V    L+  +    VA + +L  +I
Sbjct: 1110 NNYERLEFLGDCFLKMATTIALFTRIPDSNEFEYHVERMLLICNQNLFNVALKKNLQEYI 1169

Query: 98   RVSSDLRK------------------DVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
            R     R+                  +  S      ADV E++I A YL    E  G F 
Sbjct: 1170 RSKQFDRRSWYPQGLKQKAGKAQGAQNSHSLADKSIADVCEAMIGASYLSYADE--GNF- 1226

Query: 140  DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK----------------VTFRSGP 183
            D  +K  AL    F+  +          +F   P Y+                  FR  P
Sbjct: 1227 DMAFKSPALLRSAFKHPSYPR-------QFESVPNYQRLEFLGDALLDMVCVDFLFRKFP 1279

Query: 184  DHDPRF 189
            D DP++
Sbjct: 1280 DADPQW 1285


>gi|242033789|ref|XP_002464289.1| hypothetical protein SORBIDRAFT_01g015666 [Sorghum bicolor]
 gi|241918143|gb|EER91287.1| hypothetical protein SORBIDRAFT_01g015666 [Sorghum bicolor]
          Length = 462

 Score = 43.1 bits (100), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHF 63
           +L+  IGY F + SLL +ALTHSS + +      ERLEFLGD +L  +++   +  +
Sbjct: 221 SLQTIIGYVFDDSSLLIEALTHSSYNTAGITTCNERLEFLGDAVLDYILTDYFYRKY 277


>gi|238567352|ref|XP_002386225.1| hypothetical protein MPER_15614 [Moniliophthora perniciosa FA553]
 gi|215437540|gb|EEB87155.1| hypothetical protein MPER_15614 [Moniliophthora perniciosa FA553]
          Length = 116

 Score = 43.1 bits (100), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 9  LEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLF 60
          +E  IG+ F  + LL +ALTH+S        SYER+EFLGD +L ++++  L+
Sbjct: 8  VETIIGHTFKRKLLLVEALTHASHQQDLGTVSYERMEFLGDAVLDMIVNDYLY 60


>gi|330913942|ref|XP_003296428.1| hypothetical protein PTT_06534 [Pyrenophora teres f. teres 0-1]
 gi|311331414|gb|EFQ95479.1| hypothetical protein PTT_06534 [Pyrenophora teres f. teres 0-1]
          Length = 1572

 Score = 43.1 bits (100), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 63/148 (42%), Gaps = 26/148 (17%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66
            +E +  Y F    LL  A  H S  + Y+   +Y+RLEFLGD +L +   T L+  +   
Sbjct: 1284 IEAKHPYHFKYPRLLRSAFAHPSYPYIYENIPNYQRLEFLGDSLLDMAFITHLYYKYPDK 1343

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFIR-----VSSDLRKDV-------------C 108
                L+     +VS +    V  +L    +I+     ++S +R  V              
Sbjct: 1344 DPQWLTEHKTPMVSNKFLGAVCVKLGWHVYIKQNTAILTSQIRDYVLEAQEAERESGGAV 1403

Query: 109  SFMTSIQ------ADVVESLIAALYLDG 130
             +  +I       ADV+E+  AAL++D 
Sbjct: 1404 DYWVTISEPPKCLADVIEAYTAALFVDA 1431


>gi|321452752|gb|EFX64071.1| hypothetical protein DAPPUDRAFT_118569 [Daphnia pulex]
          Length = 344

 Score = 43.1 bits (100), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 15/81 (18%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           + LE++IGY F +++LL +ALTHSS  ++       E LE LGD  L L      +N   
Sbjct: 66  TALEEKIGYEFKDKTLLGRALTHSSANVTKCPSRDGENLEVLGDASLDL---NPRYN--- 119

Query: 65  SAKEGELSVRFNSLVSAETCS 85
              +G+LSV    L SA TC+
Sbjct: 120 ---QGQLSV----LKSAITCN 133


>gi|170086892|ref|XP_001874669.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164649869|gb|EDR14110.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 353

 Score = 42.7 bits (99), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 63/160 (39%), Gaps = 23/160 (14%)

Query: 7   STLEKRIGYA--FANRSLLEKALTHSSISHSYQESYER---------LEFLGDRILGLLI 55
           S    RIG A    +  L+++A TH S +  Y + Y R         L  LG+ +LGL  
Sbjct: 60  SAFAHRIGLASILTSTDLIQQACTHPSFTALYSQHYPRETPPSTNAQLVILGNSLLGLFA 119

Query: 56  STLLFNHFDSAKEGELSVR-----FNSLVSAETCSQVARELDLASFIRVSSDLRKDV--C 108
           +  L     +AK   L  R       + V   TC+ +A+E+     +R     R      
Sbjct: 120 TEYL-----NAKYPYLPTRVQKAALTAHVGPATCASIAQEMGATPLVRWHRTPRTSTRPS 174

Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL 148
              T   A V  +L A +Y    +  A  FV  Y+  R +
Sbjct: 175 VLHTDALASVPRALTALVYQQRSLFSARKFVHSYFLSRQI 214


>gi|321259818|ref|XP_003194629.1| hypothetical protein CGB_F1490W [Cryptococcus gattii WM276]
 gi|317461101|gb|ADV22842.1| Hypothetical Protein CGB_F1490W [Cryptococcus gattii WM276]
          Length = 433

 Score = 42.7 bits (99), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 14/121 (11%)

Query: 19  NRSLLEKALTHSSI-----------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           +R LL +  TH+S              ++    E+LE +GD +LG +++ LL + + +  
Sbjct: 170 DRELLRQVFTHTSYVGARKQSALFDKEAFHHDNEKLEHVGDALLGCIVTCLLHDLYPNLN 229

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR-KDVCSFMTSIQADVVESLIAAL 126
            G  +      V  +T SQ++R   +    R+ +D+   ++    T   A++ E+ +A L
Sbjct: 230 PGNATEMKAICVCNQTLSQLSRRYKMPE--RLITDVNATEILKNGTKTTANIFEAYVAGL 287

Query: 127 Y 127
           +
Sbjct: 288 H 288


>gi|321448873|gb|EFX61617.1| hypothetical protein DAPPUDRAFT_272455 [Daphnia pulex]
          Length = 177

 Score = 42.7 bits (99), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 28/43 (65%), Gaps = 3/43 (6%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRIL 51
           LE  + Y+F NR LL+ ALTH   S     +YERLEFLGD +L
Sbjct: 138 LESILNYSFKNRGLLKGALTHRYFSAL---NYERLEFLGDIVL 177



 Score = 35.0 bits (79), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 19/145 (13%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            E+  GY F +  +L +AL   + S  S  +  +RLE +GD +L L++    F    + +
Sbjct: 26  FEEIFGYKFKDEEMLHQALKRPTASLKSSVKKGDRLELVGDAVLDLIMIEECFERHVNYE 85

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS-------IQA--DV 118
            G+LS     L   +T ++ A E        +  D   + C  M +       I+A  D 
Sbjct: 86  AGQLSGVKCELTCNDTLARKAEE--------IQPDYPPEKCPKMDTNWHVNYGIEATIDK 137

Query: 119 VESLIAALYLDGGIEVAGTFVDKYW 143
           +ES++   + + G+ + G    +Y+
Sbjct: 138 LESILNYSFKNRGL-LKGALTHRYF 161


>gi|163916108|gb|AAI57422.1| Double stranded RNA activated protein kinase 1 [Xenopus laevis]
          Length = 578

 Score = 42.7 bits (99), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 31/53 (58%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           K G++ ++K    +GP HDPRFT  V ++G    +G D  K+ AE +AA   L
Sbjct: 16  KNGLSYQFKKVESTGPSHDPRFTFQVFVNGEKLGEGQDKKKKGAEYMAAKMAL 68


>gi|226294068|gb|EEH49488.1| Dicer [Paracoccidioides brasiliensis Pb18]
          Length = 1423

 Score = 42.7 bits (99), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 2/84 (2%)

Query: 12   RIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
            R+GY F    LL  A TH+S    + +   Y+RLEFLGD +L ++    L++ +      
Sbjct: 1146 RLGYRFKYPRLLSSAFTHASYPTGWSKVPCYQRLEFLGDSLLDMVCVEHLYHKYPDRDPQ 1205

Query: 70   ELSVRFNSLVSAETCSQVARELDL 93
             L+    ++VS +    VA +L L
Sbjct: 1206 WLTEHKMAMVSNKFLGAVAVKLGL 1229



 Score = 36.6 bits (83), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 20/114 (17%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
            ++YERLEFLGD  L +  S  LF       E +  V+   L+  +     A  L +  F+
Sbjct: 976  KNYERLEFLGDCFLKMSTSISLFAMNADDDEFDFHVKRMCLICNQNLFNTAMSLGIYEFV 1035

Query: 98   RVS--------------------SDLRKDVCSFMTSIQADVVESLIAALYLDGG 131
            R                      S+  ++  S      AD+ E+LI A  L GG
Sbjct: 1036 RTQGFSRRNWYPEGIKLLQGKAKSETAENKHSLADKSIADICEALIGASLLSGG 1089


>gi|164658275|ref|XP_001730263.1| hypothetical protein MGL_2645 [Malassezia globosa CBS 7966]
 gi|159104158|gb|EDP43049.1| hypothetical protein MGL_2645 [Malassezia globosa CBS 7966]
          Length = 294

 Score = 42.7 bits (99), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 56/138 (40%), Gaps = 20/138 (14%)

Query: 21  SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR-----F 75
           +L+  ALTH S  H  Q    RL F+G R L   +S   F+  + A+    SV       
Sbjct: 117 TLVSHALTHESWMHGMQGHNRRLAFIGRRALKTYLSLFFFDILEHARRTNSSVSDVEYLQ 176

Query: 76  NSLVSAETCSQVAR----------ELDLASFIRVSSDLRKDVC-----SFMTSIQADVVE 120
           N L S +    +A            L L   +R  S +R D       S +  ++   VE
Sbjct: 177 NLLSSQQHVDDIASTHHLGIVSAANLCLEKVMRWHSTVRMDPVSGPQESGLFKVRGSCVE 236

Query: 121 SLIAALYLDGGIEVAGTF 138
            LI A+Y   G +VA  F
Sbjct: 237 GLIGAIYHYKGAQVAQQF 254


>gi|284054885|ref|ZP_06385095.1| ribonuclease III [Arthrospira platensis str. Paraca]
          Length = 131

 Score = 42.7 bits (99), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 3/81 (3%)

Query: 116 ADVVESLIAALYLDGG-IEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVT 172
           AD  E+++AALYL    +E+   ++D +  +RA +  +   R++ K  LQEW  + + + 
Sbjct: 11  ADCFEAVLAALYLSTNTLELIRPWLDPHLLERATEIFNDPARQNYKAALQEWTQSCYKIL 70

Query: 173 PEYKVTFRSGPDHDPRFTVVV 193
           P+YKV        + RFT  V
Sbjct: 71  PQYKVNETGYAGDEGRFTASV 91


>gi|269115408|gb|ACZ26274.1| dicer-1-like protein [Mayetiola destructor]
          Length = 227

 Score = 42.7 bits (99), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 62/123 (50%), Gaps = 9/123 (7%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           Y  +EK++ Y F ++S + +A +H S + +    +Y+ L+F+GD I+  L+   LF    
Sbjct: 8   YEQIEKKLNYTFRDKSFMLQAFSHESFTANDICPNYDSLDFVGDGIINYLLCRHLFREAG 67

Query: 65  ---SAKEGELSVRFNSLVSAETC-SQVARELDLASFIR-VSSDLRKDVCSFMTSIQADVV 119
              SA E E    F + + +  C + V+    + +F R + + L   + SF+  +Q +  
Sbjct: 68  GQFSANEIEF---FTNTLKSNCCFATVSIRHGIHNFFRLMDTKLNGSLASFVKFVQKNQC 124

Query: 120 ESL 122
           + +
Sbjct: 125 QPI 127


>gi|225684422|gb|EEH22706.1| dicer [Paracoccidioides brasiliensis Pb03]
          Length = 1469

 Score = 42.7 bits (99), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 2/84 (2%)

Query: 12   RIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
            R+GY F    LL  A TH+S    + +   Y+RLEFLGD +L ++    L++ +      
Sbjct: 1207 RLGYRFKYPRLLSSAFTHASYPTGWSKVPCYQRLEFLGDSLLDMVCVEHLYHKYPDRDPQ 1266

Query: 70   ELSVRFNSLVSAETCSQVARELDL 93
             L+    ++VS +    VA +L L
Sbjct: 1267 WLTEHKMAMVSNKFLGAVAVKLGL 1290



 Score = 36.6 bits (83), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 20/114 (17%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
            ++YERLEFLGD  L +  S  LF       E +  V+   L+  +     A  L +  F+
Sbjct: 1037 KNYERLEFLGDCFLKMSTSISLFAMNADDDEFDFHVKRMCLICNQNLFNTAMSLGIYEFV 1096

Query: 98   RVS--------------------SDLRKDVCSFMTSIQADVVESLIAALYLDGG 131
            R                      S+  ++  S      AD+ E+LI A  L GG
Sbjct: 1097 RTQGFSRRNWYPEGIKLLQGKAKSETAENKHSLADKSIADICEALIGASLLSGG 1150


>gi|39965953|ref|XP_365151.1| hypothetical protein [Magnaporthe oryzae 70-15]
 gi|145015378|gb|EDJ99914.1| predicted protein [Magnaporthe oryzae 70-15]
          Length = 147

 Score = 42.4 bits (98), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 15/136 (11%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS---------HSYQESYERLEFLGDRILGLLISTLL 59
           ++ +IG+ F N+ L ++ALT + ++         H + +    L  +GD IL   I   L
Sbjct: 8   IQTKIGHTFGNQRLCDEALTAAGVTLRMSATSQVH-HLDGNAALALIGDGIL--QIGVGL 64

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
            +      +GE S R  ++VS +  + +     L   + + +  +    S  T  +A VV
Sbjct: 65  RSRGLGESKGEASDRLKNIVSNKNLASIFDTAQLGPHV-IGNPSQWGAISAKT--KATVV 121

Query: 120 ESLIAALYLDGGIEVA 135
           E+L+ A+Y+D GIE A
Sbjct: 122 EALLGAVYVDAGIEAA 137


>gi|255524266|ref|ZP_05391225.1| ribonuclease III [Clostridium carboxidivorans P7]
 gi|255512091|gb|EET88372.1| ribonuclease III [Clostridium carboxidivorans P7]
          Length = 96

 Score = 42.4 bits (98), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 3/69 (4%)

Query: 6  YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLF-NH 62
          +  LE+++   F ++ LL+ ALTHSS ++  +  +  ERLEFLGD +L + IS  LF N+
Sbjct: 14 FVELEQKLDVCFEDKELLKIALTHSSYANGKKNIKFNERLEFLGDSVLQISISEYLFLNY 73

Query: 63 FDSAKEGEL 71
              KE  L
Sbjct: 74 SKKLKENLL 82


>gi|219852808|ref|YP_002467240.1| ribonuclease III [Methanosphaerula palustris E1-9c]
 gi|219547067|gb|ACL17517.1| ribonuclease III [Methanosphaerula palustris E1-9c]
          Length = 160

 Score = 42.4 bits (98), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 5/128 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYER----LEFLGDRILGLLISTLLFNHFD 64
           LE+RI Y F +++  ++ALT  + +       +R    L  LGD ++ LL+   L     
Sbjct: 10  LERRIKYRFIDQAHPQRALTRLAFAGEQHFEDDRDMDALATLGDAVIDLLVIDDLLRT-G 68

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             ++GE++V     V+      +A  LDLA  +                + A+  E++I 
Sbjct: 69  VTRKGEITVLKVRRVNMSVLRSIAESLDLAPLVFWGKGEETQQVWLSGRVLAECCEAVIG 128

Query: 125 ALYLDGGI 132
           A++LDGG+
Sbjct: 129 AVFLDGGL 136


>gi|327282012|ref|XP_003225738.1| PREDICTED: interferon-inducible double stranded RNA-dependent
           protein kinase activator A-like [Anolis carolinensis]
          Length = 329

 Score = 42.4 bits (98), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 1/99 (1%)

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           AAL +  G  V    V  +    A+   + + +    LQE A  K    PEY +   +GP
Sbjct: 113 AALNIMKGNSVVCIAVPDHLIPGAVNQAQNKTNPVGSLQELAIQKGWKLPEYSMAQETGP 172

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            H   FTV   I       GM  SK+ A++ AA ++L++
Sbjct: 173 PHKREFTVTCRIEAFV-ETGMGTSKKLAKRNAAEKLLRK 210


>gi|189205613|ref|XP_001939141.1| endoribonuclease dcr-1 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187975234|gb|EDU41860.1| endoribonuclease dcr-1 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1572

 Score = 42.4 bits (98), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 63/148 (42%), Gaps = 26/148 (17%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66
            +E +  Y F    LL  A  H S  + Y+   +Y+RLEFLGD +L +   T L+  +   
Sbjct: 1284 IEAKHPYHFKYPRLLRSAFAHPSYPYIYENIPNYQRLEFLGDSLLDMAFITHLYYKYPDK 1343

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFIR-----VSSDLRKDV-------------C 108
                L+     +VS +    V  +L    +I+     ++S +R  V              
Sbjct: 1344 DPQWLTEHKTPMVSNKFLGAVCVKLGWHVYIKQNTAILTSQIRDYVLEAQEAEREASSAV 1403

Query: 109  SFMTSIQ------ADVVESLIAALYLDG 130
             +  +I       ADV+E+  AA+++D 
Sbjct: 1404 DYWVTISEPPKCLADVIEAYTAAIFVDA 1431


>gi|58268964|ref|XP_571638.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134112802|ref|XP_774944.1| hypothetical protein CNBF1090 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50257592|gb|EAL20297.1| hypothetical protein CNBF1090 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57227873|gb|AAW44331.1| expressed protein [Cryptococcus neoformans var. neoformans JEC21]
          Length = 418

 Score = 42.0 bits (97), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 14/121 (11%)

Query: 19  NRSLLEKALTHSSI-----------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           +R LL +  TH+S              ++    E+LE +GD +LG +++ LL + + +  
Sbjct: 155 DRELLRQVFTHTSYVGARKQSALFDKEAFHHDNEKLEHVGDALLGCIVTCLLHDLYPNLN 214

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR-KDVCSFMTSIQADVVESLIAAL 126
            G  +      V  +T SQ++R   +    R+ +D+   ++    T   A++ E+ +A L
Sbjct: 215 PGNATEMKAICVCNQTLSQLSRRYKMPE--RLITDVNATEILKNGTKTTANIFEAYVAGL 272

Query: 127 Y 127
           +
Sbjct: 273 H 273


>gi|168046558|ref|XP_001775740.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672892|gb|EDQ59423.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 792

 Score = 42.0 bits (97), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 12/118 (10%)

Query: 8   TLEKRIGYAFANRSLL--------EKALTHSSISH-SYQESYERLEFLGDRILGLLISTL 58
           TLEK+IGY F  +SLL        E   T S +   S+Q  ++RLEFLGD +L  LI   
Sbjct: 542 TLEKKIGYQFKCKSLLLSAFDYGDEVTFTQSGVPRGSFQ--FQRLEFLGDSVLDFLIMRH 599

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSFMTSIQ 115
               + +    +L+    + V++E  +  A       ++ R+S  LR ++  +  S+ 
Sbjct: 600 FVQLYSAFNPEQLNDLRQATVNSENFACTAIRHGFHHYLKRMSPILRDEIELYAASVH 657


>gi|145523303|ref|XP_001447490.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124415001|emb|CAK80093.1| unnamed protein product [Paramecium tetraurelia]
          Length = 419

 Score = 42.0 bits (97), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 47/241 (19%), Positives = 107/241 (44%), Gaps = 36/241 (14%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE---------SYERLEFLGDRILGLLISTLL 59
           +  RI + F N ++L +ALT+      YQ          + E    +G  IL    S  L
Sbjct: 89  MNNRI-FRFQNTNILAQALTNKIHELEYQSKKGTKYPFGNNEEFIVIGQMILEFYFSDYL 147

Query: 60  ----FNHFDSA--KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD--LRKDVCSFM 111
               +   DS+  K  +L +    L++ +  +++A + ++ +F+++ +   L+K+     
Sbjct: 148 MQRGYPKKDSSIKKPSDLVLLRQRLLNDKNLAEIAIQYNVHNFVQIGNQTALKKN----- 202

Query: 112 TSIQADVVESLIAALYLDGGIEVAGT----------FVDKYWKQRALKSGKFRRDAKTEL 161
           + + A+ +++++AA Y D G ++  T           +DK    + +   + +++ KT  
Sbjct: 203 SKVLAETLKAMVAAQYYDSGFDLEHTREILQSILKELLDK---GQNVPIAELKQNPKTSF 259

Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            E+ + +  + P+  V ++   +    + + +E+           +KR  EQ+   E LK
Sbjct: 260 LEYINNQTDLIPKVSVEWKKDENSINVYKIQLELDSYINITKTGANKRQTEQLVYQEALK 319

Query: 222 R 222
           +
Sbjct: 320 Q 320


>gi|310794641|gb|EFQ30102.1| RNase3 domain-containing protein [Glomerella graminicola M1.001]
          Length = 1447

 Score = 42.0 bits (97), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLF 60
            LE  IGY F  ++LL +A+TH+S +        ERLEF+GD +L  ++   LF
Sbjct: 1142 LEHLIGYKFDRKTLLIQAMTHASFNLGNPFGCLERLEFMGDSVLDYVVVNRLF 1194



 Score = 39.7 bits (91), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 19/137 (13%)

Query: 16   AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
            A ++ SL+  A++  S S     +YER+EFLGD IL    +  +        E  LS   
Sbjct: 968  AISDLSLILTAISTGSASEP--TNYERIEFLGDSILKFSATINVAALNPQWPERLLSFHK 1025

Query: 76   NSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDVCSFMTSIQADV 118
            +++VS  T  + A +  L  +I                  +S    K +    T   AD+
Sbjct: 1026 DAIVSNSTLCKAAVKHGLDRYILTKPFTGQKWRPIYVDSVLSRGEDKSMRKMSTKTLADI 1085

Query: 119  VESLIAALYLDGGIEVA 135
            VE+LI A  +DGG++ A
Sbjct: 1086 VEALIGASMIDGGLDKA 1102


>gi|147906536|ref|NP_001091256.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Xenopus
           laevis]
 gi|121308150|emb|CAM07152.1| double stranded RNA activated protein kinase 1 [Xenopus laevis]
          Length = 578

 Score = 42.0 bits (97), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 31/53 (58%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           K G++ ++K    +GP HDPRFT  V ++G    +G D  K+ AE +AA   L
Sbjct: 16  KNGLSYQFKKVEATGPSHDPRFTFQVFVNGEKLGEGQDKKKKGAECMAAKMAL 68


>gi|302845712|ref|XP_002954394.1| hypothetical protein VOLCADRAFT_106340 [Volvox carteri f.
            nagariensis]
 gi|300260324|gb|EFJ44544.1| hypothetical protein VOLCADRAFT_106340 [Volvox carteri f.
            nagariensis]
          Length = 2391

 Score = 42.0 bits (97), Expect = 0.065,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 6/56 (10%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLF 60
            +E+ +G+ FA+  L  +ALTH  +SH    S    Y+R+EFLGD +LG++ S   F
Sbjct: 2112 VEELLGHTFAHPKLCVQALTH--VSHPTASSCGGGYQRVEFLGDGVLGMVASVWAF 2165


>gi|67925688|ref|ZP_00519002.1| Ribonuclease III [Crocosphaera watsonii WH 8501]
 gi|67852471|gb|EAM47916.1| Ribonuclease III [Crocosphaera watsonii WH 8501]
          Length = 328

 Score = 41.6 bits (96), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 71/146 (48%), Gaps = 15/146 (10%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTLLFNHF 63
           S ++++I + F N  LL  +L+  S      +     +RLE LG+ +L L+I   L++HF
Sbjct: 6   SLVQEKISFNFKNTDLLFLSLSDPSYGKQINQPDSDNQRLESLGENLLALIIIDYLYHHF 65

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLA---SFIRVSSD---LR-KDVCSFMTSIQA 116
                 +++   + L+  E  + +   L L     F+ V+ +   LR K    F  S++A
Sbjct: 66  PYLTLSKMTALQDKLLDKEKLTNLWFSLGLGESYPFLDVNQERHRLRVKTTNPFEKSLKA 125

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKY 142
                L+AA+++D G   +  + +K+
Sbjct: 126 -----LVAAIHVDRGFSHSYNWFNKH 146


>gi|88602406|ref|YP_502584.1| ribonuclease III [Methanospirillum hungatei JF-1]
 gi|88187868|gb|ABD40865.1| RNAse III [Methanospirillum hungatei JF-1]
          Length = 151

 Score = 41.6 bits (96), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 5/137 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLLFNHFD 64
           LE+  GY F ++SLL +ALT  + S     S     + L  LGD ++ L+I T L    +
Sbjct: 10  LERITGYTFRDKSLLLRALTRLAYSKEQGLSEDSHLDALATLGDAVIELIILTRLVKGGE 69

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             K G +S++   LV+       AR + L  ++R      +        + A+ +E+   
Sbjct: 70  HDK-GAVSLKKMDLVNMSVLRDAARSIHLEQYVRWGKGEARMHVWTSGRVLAECMEAFAG 128

Query: 125 ALYLDGGIEVAGTFVDK 141
           ALYLDGGI+ A   +++
Sbjct: 129 ALYLDGGIDAAEEVLER 145


>gi|307109321|gb|EFN57559.1| hypothetical protein CHLNCDRAFT_143199 [Chlorella variabilis]
          Length = 2232

 Score = 41.6 bits (96), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 32/50 (64%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58
            +E  +G+ FA++ L+ +ALTH S   S    ++RLEFLGD +L  L+  +
Sbjct: 1928 IEAVLGHTFASKWLVVEALTHCSWPGSGVRCFQRLEFLGDAVLDALMHDM 1977



 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 15/109 (13%)

Query: 42   RLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-- 99
            RLE LGD  L   +S  LF+      EG+L+ R   +V+    ++ A +L L   +RV  
Sbjct: 1765 RLETLGDAFLKFAVSAQLFSAHRQYHEGQLTKRKELVVANIHLAEAAVKLGLDRRLRVLP 1824

Query: 100  --------SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140
                       +RK      + + AD +E+L+ A  + GG   A  F+ 
Sbjct: 1825 FSMHNWASPEAVRKS-----SKVLADAMEALLGAFLVAGGYPAALAFLQ 1868


>gi|158706454|sp|Q0CW42|DCL1_ASPTN RecName: Full=Dicer-like protein 1; Includes: RecName:
            Full=Endoribonuclease dcl1; Includes: RecName:
            Full=ATP-dependent helicase dcl1
          Length = 1519

 Score = 41.2 bits (95), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
            +E+++GY F    LL  A TH S   ++     Y+ LEFLGD +L ++    LF  F   
Sbjct: 1238 VEEKLGYHFRYPRLLHSAFTHPSYPSAWARVPCYQSLEFLGDALLDMVCVEDLFRRFPDR 1297

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFI 97
                L+    ++VS +    +A +L L + +
Sbjct: 1298 DPQWLTEHKMAMVSNKFLGALAVKLGLHTHL 1328



 Score = 37.4 bits (85), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 29/61 (47%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
            ++YERLEFLGD  L +  S  LFN      E +  V    L+        A + +L  FI
Sbjct: 1069 KNYERLEFLGDCFLKMATSISLFNQHPDDNEFDYHVNRMCLICNRNLFNSAVKKELYQFI 1128

Query: 98   R 98
            R
Sbjct: 1129 R 1129


>gi|194665306|ref|XP_581374.4| PREDICTED: adenosine deaminase, RNA-specific [Bos taurus]
 gi|297472608|ref|XP_002686059.1| PREDICTED: RNA adenosine deaminase-like [Bos taurus]
 gi|296489763|gb|DAA31876.1| RNA adenosine deaminase-like [Bos taurus]
          Length = 1149

 Score = 41.2 bits (95), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  T L E  H K G + E+++  R GP HDP+F   V +           SK+AA+Q+
Sbjct: 562 KNPVTTLLECVH-KLGSSCEFRLLSREGPAHDPKFQYCVAMGTHTFPTASAPSKKAAKQM 620

Query: 215 AAAEVLK 221
           AA E +K
Sbjct: 621 AAEEAMK 627


>gi|195116871|ref|XP_002002975.1| GI17670 [Drosophila mojavensis]
 gi|193913550|gb|EDW12417.1| GI17670 [Drosophila mojavensis]
          Length = 96

 Score = 41.2 bits (95), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 4/83 (4%)

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV--VE 120
           F   +EG L++   ++V  + C+ +A++L L  F+  +  L  D+C  +    A V   E
Sbjct: 2   FPEQEEGGLAMYSAAIVQNQHCALLAKKLQLEEFMLYAQGL--DMCHELELRHAMVSCFE 59

Query: 121 SLIAALYLDGGIEVAGTFVDKYW 143
            L+ A+ LDGGI VA     ++W
Sbjct: 60  DLMGAILLDGGIMVADEVFTRFW 82


>gi|115387529|ref|XP_001211270.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114195354|gb|EAU37054.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 1344

 Score = 41.2 bits (95), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
            +E+++GY F    LL  A TH S   ++     Y+ LEFLGD +L ++    LF  F   
Sbjct: 1212 VEEKLGYHFRYPRLLHSAFTHPSYPSAWARVPCYQSLEFLGDALLDMVCVEDLFRRFPDR 1271

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFI 97
                L+    ++VS +    +A +L L + +
Sbjct: 1272 DPQWLTEHKMAMVSNKFLGALAVKLGLHTHL 1302



 Score = 37.0 bits (84), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 29/61 (47%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
            ++YERLEFLGD  L +  S  LFN      E +  V    L+        A + +L  FI
Sbjct: 1043 KNYERLEFLGDCFLKMATSISLFNQHPDDNEFDYHVNRMCLICNRNLFNSAVKKELYQFI 1102

Query: 98   R 98
            R
Sbjct: 1103 R 1103


>gi|145540581|ref|XP_001455980.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|74834199|emb|CAI44479.1| Dicer-like ribonuclease with helicase and Rnase III domains
            [Paramecium tetraurelia]
 gi|124423789|emb|CAK88583.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1797

 Score = 41.2 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 74/195 (37%), Gaps = 72/195 (36%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSS----------------------------ISHSYQE 38
            ++LE  IGY F ++S+L +A+TH S                            IS+  Q 
Sbjct: 1501 NSLENIIGYKFNDQSILIQAITHQSFLSVLDFYNYRKCKCNFVEFQNTKNILQISNLNQN 1560

Query: 39   -------------------SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
                               SYERLEFLGD +L  ++   L   F+  K  +L+++   +V
Sbjct: 1561 DINESLLTQLNQQQNRIDMSYERLEFLGDSVLDSVVVEWLVKEFNKEKVEDLALKKQCVV 1620

Query: 80   SAETCSQVARELDLASFI--------------------RVSSDLRKDVCSFMTS-----I 114
              +  + V     L  F+                    ++ ++   D+    TS     I
Sbjct: 1621 CNKALALVTLHYKLDQFLLHPTLHKVAHENHQTLNKIKQMYNEYYDDISKMYTSEPIIKI 1680

Query: 115  QADVVESLIAALYLD 129
              DV ES++ A+++D
Sbjct: 1681 LGDVFESIVGAIFVD 1695


>gi|311254196|ref|XP_003125793.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like,
           partial [Sus scrofa]
          Length = 1171

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  T L E  H K G + E+++  R GP HDP+F   V +           SK+AA+Q+
Sbjct: 584 KNPVTTLLECVH-KLGSSCEFRLLSREGPAHDPKFQYCVAMGTHTFPTASAPSKKAAKQL 642

Query: 215 AAAEVLK 221
           AA E +K
Sbjct: 643 AAEEAMK 649


>gi|297794783|ref|XP_002865276.1| hypothetical protein ARALYDRAFT_494464 [Arabidopsis lyrata subsp.
          lyrata]
 gi|297311111|gb|EFH41535.1| hypothetical protein ARALYDRAFT_494464 [Arabidopsis lyrata subsp.
          lyrata]
          Length = 892

 Score = 41.2 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 6/85 (7%)

Query: 9  LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
          +EK + Y+F N++LL+ A+T  S        ++RLEF GD +L +  +  + + + + K 
Sbjct: 7  VEKILNYSFTNKTLLKDAITQRSTL------FDRLEFFGDSVLEVAFTNYIRHTYPNLKV 60

Query: 69 GELSVRFNSLVSAETCSQVARELDL 93
           EL     + VS E  ++VA  L +
Sbjct: 61 KELCDLRTANVSNEKFARVAEILQI 85



 Score = 36.2 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 50/97 (51%), Gaps = 5/97 (5%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M +     +EK + Y+F N++LL + LTH++        ++RL F+G+  L L  +  L+
Sbjct: 345 MDSDSVEAVEKILNYSFVNKNLLNELLTHNT-----SPLFQRLMFVGEPALSLAFTKHLY 399

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
             +   +  +LS+  ++    +  ++VA +  +  FI
Sbjct: 400 LTYPKLEPKDLSLLRDANACNDRYARVAVKKGIYQFI 436


>gi|118370147|ref|XP_001018276.1| Dicer-related RNase III protein Dcr1p, putative [Tetrahymena
            thermophila]
 gi|89300043|gb|EAR98031.1| Dicer-related RNase III protein Dcr1p, putative [Tetrahymena
            thermophila SB210]
          Length = 1903

 Score = 41.2 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 35/52 (67%), Gaps = 4/52 (7%)

Query: 7    STLEKRIGYAFANRSLLEKAL---THSSISHSYQESYERLEFLGDRILGLLI 55
            S  EK + Y F ++SLL KAL   ++S+  H +Q+ Y+ LEFLGD ++ +L+
Sbjct: 1640 SGFEKILNYTFKDKSLLIKALNCHSNSNFEHYFQD-YQILEFLGDALIEILV 1690


>gi|330889503|gb|EGH22164.1| ribonuclease III [Pseudomonas syringae pv. mori str. 301020]
          Length = 52

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 3/48 (6%)

Query: 7  STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLL 54
          S LE+++GY F ++ L+  ALTH S +     + ERLEFLGD IL  +
Sbjct: 6  SRLERQLGYTFKDQELMVLALTHRSFA---GRNNERLEFLGDAILNFV 50


>gi|294464151|gb|ADE77592.1| unknown [Picea sitchensis]
          Length = 505

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           K  LQE A       PEYK T R GPDH PRF   V  +G A      C      Q AAA
Sbjct: 3   KNRLQEVAQKHCVSLPEYKST-REGPDHAPRFKATVTYNGRAFESPAFCKTAKEAQNAAA 61

Query: 218 E 218
           E
Sbjct: 62  E 62



 Score = 36.6 bits (83), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           LQE+A  +    PEY VT RSGP H P F   V+ +G   A     SK+ AE+ AA
Sbjct: 350 LQEFAQKEGIPFPEY-VTDRSGPSHIPIFKSTVKFAGTTFAGKEANSKKQAEKNAA 404


>gi|257058554|ref|YP_003136442.1| ribonuclease III [Cyanothece sp. PCC 8802]
 gi|256588720|gb|ACU99606.1| ribonuclease III [Cyanothece sp. PCC 8802]
          Length = 323

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 7/141 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTLLFNHF 63
           S++E +IG  F N  LL   L H S +    E     ERLE+LG+ IL L+I+  L+ + 
Sbjct: 6   SSVEDKIGINFKNSELLFLCLIHPSYAQQINEPEKDNERLEYLGETILRLVITDYLYQNC 65

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLA---SFIRVSSDLRKDVCSFMTSIQADVVE 120
                 +LS   + L   E  + +   L L     F+ +  D R  +     +     ++
Sbjct: 66  PYLAVSKLSALRDKLEEGERLTTLWFNLGLGETFPFLAL-KDERYRLKIKRNNPFEKALK 124

Query: 121 SLIAALYLDGGIEVAGTFVDK 141
           +L+ AL +D G      +++K
Sbjct: 125 ALVGALEIDRGYSQTYNWLNK 145


>gi|218245517|ref|YP_002370888.1| ribonuclease III [Cyanothece sp. PCC 8801]
 gi|218165995|gb|ACK64732.1| ribonuclease III [Cyanothece sp. PCC 8801]
          Length = 323

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 7/141 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTLLFNHF 63
           S++E +IG  F N  LL   L H S +    E     ERLE+LG+ IL L+I+  L+ + 
Sbjct: 6   SSVEDKIGINFKNSELLFLCLIHPSYAQQINEPEKDNERLEYLGETILRLVITDYLYQNC 65

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLA---SFIRVSSDLRKDVCSFMTSIQADVVE 120
                 +LS   + L   E  + +   L L     F+ +  D R  +     +     ++
Sbjct: 66  PYLAVSKLSALRDKLEEGERLTTLWFNLGLGETFPFLAL-KDERYRLKIKRNNPFEKALK 124

Query: 121 SLIAALYLDGGIEVAGTFVDK 141
           +L+ AL +D G      +++K
Sbjct: 125 ALVGALEIDRGYSQTYNWLNK 145


>gi|114654623|ref|XP_510148.2| PREDICTED: dicer1 isoform 7 [Pan troglodytes]
          Length = 1715

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 13   IGYAF----ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            IGY+      N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A E
Sbjct: 1283 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1340

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVS 100
            G LS   +  VS     ++ ++  L S + VS
Sbjct: 1341 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1372


>gi|323126808|gb|ADX24105.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
          ATCC 12394]
          Length = 79

 Score = 40.8 bits (94), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 31/49 (63%), Gaps = 4/49 (8%)

Query: 16 AFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           F + +LLE A TH+S ++ ++       ERLEFLGD +L L+IS  LF
Sbjct: 15 CFEDHTLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIISEYLF 63


>gi|50897087|dbj|BAD34724.1| Dicer-related RNase III protein Dcl1p [Tetrahymena thermophila]
          Length = 1275

 Score = 40.8 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 35/52 (67%), Gaps = 4/52 (7%)

Query: 7    STLEKRIGYAFANRSLLEKAL---THSSISHSYQESYERLEFLGDRILGLLI 55
            S  EK + Y F ++SLL KAL   ++S+  H +Q+ Y+ LEFLGD ++ +L+
Sbjct: 1012 SGFEKILNYTFKDKSLLIKALNCHSNSNFEHYFQD-YQILEFLGDALIEILV 1062


>gi|158706448|sp|Q0UI93|DCL1_PHANO RecName: Full=Dicer-like protein 1; Includes: RecName:
            Full=Endoribonuclease DCL1; Includes: RecName:
            Full=ATP-dependent helicase DCL1
          Length = 1522

 Score = 40.8 bits (94), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 68/164 (41%), Gaps = 28/164 (17%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66
            +E +  Y F    LL  A  H S    ++   SY+RLEFLGD +L +     LF  +   
Sbjct: 1225 IEMKHPYRFRYPRLLRSAFIHPSQPFMWENIPSYQRLEFLGDSLLDMAFIMHLFYKYPDK 1284

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFIR-----VSSDLRKDV-------------C 108
                L+     +VS +    V  +L   + ++     +SS +R  V              
Sbjct: 1285 DPQWLTEHKTPMVSNKFLGAVCVKLGWHTHMKQNTAILSSQIRDYVYEVEEAEREANGAV 1344

Query: 109  SFMTSIQ------ADVVESLIAALYLDGGIE--VAGTFVDKYWK 144
             +  S+       ADV+E+ +AA+++D   +  V   F D + K
Sbjct: 1345 DYWVSVSEPPKCLADVIEAFVAAIFVDSEFDFNVVQKFFDLHLK 1388


>gi|295670335|ref|XP_002795715.1| RNase3 domain-containing protein [Paracoccidioides brasiliensis Pb01]
 gi|226284800|gb|EEH40366.1| RNase3 domain-containing protein [Paracoccidioides brasiliensis Pb01]
          Length = 1346

 Score = 40.8 bits (94), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 8/101 (7%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
            ++YERLEFLGD  L +  S  LF       E +  V+   L+  +     A  L +  F+
Sbjct: 944  KNYERLEFLGDCFLKMSTSISLFAMNADNDEFDFHVKRMCLICNQNLFNTAMSLGIYEFV 1003

Query: 98   RVSSDLRKD-------VCSFMTSIQADVVESLIAALYLDGG 131
            R     R++       +     SI AD+ E+LI A  L GG
Sbjct: 1004 RTQGFSRRNWYPEGIKLLQADKSI-ADICEALIGASLLSGG 1043



 Score = 39.7 bits (91), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 12   RIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHF 63
            R+GY F    LL  A TH+S    + +   Y+RLEFLGD +L ++    L++ +
Sbjct: 1100 RLGYRFKYPRLLSSAFTHASYPTVWSKVPCYQRLEFLGDSLLDMVCVEHLYHKY 1153


>gi|33322810|gb|AAQ07140.1|AF496451_1 ribonuclease III [Lactobacillus delbrueckii subsp. lactis]
          Length = 107

 Score = 40.8 bits (94), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 4/91 (4%)

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
           +S  L+ HF    EGEL+   +++V  E  S+VA +       ++     K       ++
Sbjct: 2   VSDYLYRHFQHLNEGELTRLRSNIVRTEGFSKVALDCGFKKEXKLGVGEEKAGGRKRKAL 61

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145
             DV E+   AL+LD GIE     V+K+ KQ
Sbjct: 62  LEDVFEAFNGALFLDQGIEA----VEKFLKQ 88


>gi|115478498|ref|NP_001062844.1| Os09g0315100 [Oryza sativa Japonica Group]
 gi|113631077|dbj|BAF24758.1| Os09g0315100 [Oryza sativa Japonica Group]
          Length = 245

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQES-YERLEFLGDRILGLLIS 56
           +LE  +GY F +  LL +ALTH S   S   S Y+RLEFLGD IL  L +
Sbjct: 191 SLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFT 240


>gi|330982830|gb|EGH80933.1| ribonuclease III [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 49

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 3/46 (6%)

Query: 7  STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILG 52
          S LE+++GY F ++ L+  ALTH S +     + ERLEFLGD IL 
Sbjct: 6  SRLERQLGYTFKDQELMVLALTHRSFA---GRNNERLEFLGDAILN 48


>gi|224613141|dbj|BAH24245.1| dsRNA-specific ribonuclease RNaseIII [Korean potato witches'-broom
           phytoplasma]
          Length = 163

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 11/137 (8%)

Query: 88  ARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI----EVAGTFVDKYW 143
           A+E+ L ++I +    +K   +   SI +D  E+L  A+YLD G     ++    V  Y 
Sbjct: 22  AKEIKLKNYILLGKGEKKRYDN-NYSIISDAFEALFGAIYLDLGFNQTQKIFHNIVLPY- 79

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203
               LK      D KT+LQE           YK+    G  H+  F   V +      +G
Sbjct: 80  ----LKKVINIIDFKTKLQELIQTNRH-NINYKIVSEQGLAHEKEFITEVYLEEQFLGRG 134

Query: 204 MDCSKRAAEQVAAAEVL 220
           M  +K+A+EQ AA + L
Sbjct: 135 MGKTKKASEQKAAQQAL 151


>gi|322511164|gb|ADX06477.1| putative ribonuclease III [Organic Lake phycodnavirus 2]
          Length = 92

 Score = 40.4 bits (93), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 37  QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96
           Q S ERLEF+GD IL ++    L+  F  A EG ++ +  +LV  +   ++A +L L  +
Sbjct: 15  QSSNERLEFIGDGILEMITKYYLYKRFPDADEGFMTEKKINLVKNDHIGKLAYKLGLHKW 74

Query: 97  IRVS 100
           + +S
Sbjct: 75  LLLS 78


>gi|321463701|gb|EFX74715.1| hypothetical protein DAPPUDRAFT_108624 [Daphnia pulex]
          Length = 257

 Score = 40.4 bits (93), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILG 52
           LE  + Y F N+  L +AL H S   +  ES ++ EFLGD+ LG
Sbjct: 100 LETILKYKFTNKLFLLQALRHPSAVSALDESNDKFEFLGDKQLG 143


>gi|149234499|ref|XP_001523129.1| hypothetical protein LELG_05675 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146453238|gb|EDK47494.1| hypothetical protein LELG_05675 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 729

 Score = 40.4 bits (93), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 78/176 (44%), Gaps = 23/176 (13%)

Query: 21  SLLEKALTHSSISHS---------YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71
           +L EK   H S  ++           +  ERLEF GD IL  LI+ +++N F +  EGEL
Sbjct: 360 ALYEKVFVHKSTVNNRTYLGSDALIHKHNERLEFYGDSILNNLITIIIYNKFPNNTEGEL 419

Query: 72  SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF-MTSIQADVVESLIAALYLDG 130
           S    ++++     ++A +      +R   D  +DV +     I ADV E+ I AL L+ 
Sbjct: 420 SKIRAAMINNRVLKEIAVDYGFDKKLRTRID--QDVLNLGEQKIYADVFEAYIGALGLER 477

Query: 131 GI---EVAGTFVDKYWK-----QRALKSGKFRRDAKTELQEWAHAKFG-VTPEYKV 177
                EV       Y K     QR        RDAK EL  ++    G + P YKV
Sbjct: 478 QFDLKEVKDWLEILYAKRIADLQREYIKDPLDRDAKAEL--YSMIGTGDLHPTYKV 531


>gi|47210542|emb|CAF93934.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1479

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 18   ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
             N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   + 
Sbjct: 1347 PNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1404

Query: 78   LVSAETCSQVARELDLASFIRVS 100
             VS     ++ ++  L S + VS
Sbjct: 1405 KVSNCNLYRLGKKKGLPSRMVVS 1427


>gi|224135779|ref|XP_002322158.1| predicted protein [Populus trichocarpa]
 gi|222869154|gb|EEF06285.1| predicted protein [Populus trichocarpa]
          Length = 160

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 6/95 (6%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           TL+ + GYAF N   L +A+THSS S   +E+ + L  LG  ++   +S           
Sbjct: 20  TLQNQTGYAFKNIGYLRRAMTHSSFS---EENNKALSILGSNVIDTSVSMYYLGKDAEIS 76

Query: 68  EGELSVRF--NSLVSAETCSQVARELDLASFIRVS 100
             +L+ R   NS V   +C+     L L   +RVS
Sbjct: 77  SKDLNRRIADNSKVDT-SCAVDGMRLGLHKVVRVS 110


>gi|321451187|gb|EFX62921.1| hypothetical protein DAPPUDRAFT_336204 [Daphnia pulex]
          Length = 158

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 2/77 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            E+  GY F +  +L +AL   + S  S  +  +RLE +GD +LG+L+S  LF       
Sbjct: 26  FEEIFGYKFKDEEMLHQALKRPTASLKSSVKKGDRLELVGDAVLGILVSIGLFRTITMYN 85

Query: 68  EGELSVRFNSLVSAETC 84
            G+L+ R  S ++   C
Sbjct: 86  PGDLT-RHRSALTCNDC 101


>gi|19072786|gb|AAL84638.1|AF484524_1 endoribonuclease Dicer [Mus musculus x Mus spretus]
          Length = 1539

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 13   IGYAF----ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            +GY+      N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A E
Sbjct: 1267 VGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYHDAHE 1324

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVS 100
            G LS   +  VS     ++ ++  L S + VS
Sbjct: 1325 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1356


>gi|196007068|ref|XP_002113400.1| hypothetical protein TRIADDRAFT_57522 [Trichoplax adhaerens]
 gi|190583804|gb|EDV23874.1| hypothetical protein TRIADDRAFT_57522 [Trichoplax adhaerens]
          Length = 213

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 34/155 (21%), Positives = 74/155 (47%), Gaps = 30/155 (19%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSS-----ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            ++KR+GY   N +LL +ALT  S     I ++ + + +RL+++G  +    I   L+  
Sbjct: 24  NMQKRLGYHIKNINLLLQALTRQSAIRQGIHYASKSNNQRLQWVGSNMFHSGIVYKLYEK 83

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADV 118
           + +          NS +S +  ++VA  +++ S + + +++ K +    C F  S +  +
Sbjct: 84  YAN----------NSYISTDYLNKVA--INITSNMALVAEIGKRIGLASCVFRGSDEEII 131

Query: 119 VESLIAALYL---------DGGIEVAGTFVDKYWK 144
              ++A  +L         DGG +     ++++WK
Sbjct: 132 TSEILAHTFLAILGSITLDDGGQKAVHDVIERHWK 166


>gi|168021275|ref|XP_001763167.1| dsRNA-specific nuclease dicer and related ribonuclease
           [Physcomitrella patens subsp. patens]
 gi|162685650|gb|EDQ72044.1| dsRNA-specific nuclease dicer and related ribonuclease
           [Physcomitrella patens subsp. patens]
          Length = 961

 Score = 40.0 bits (92), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 2/73 (2%)

Query: 26  ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85
           ALT +S   ++  SYER E L D  L  ++S  LF  F S  EG+L+     +VS     
Sbjct: 512 ALTAASCQETF--SYERAELLSDAYLEWVVSHRLFLKFPSKHEGQLTRMRQKIVSNSVLY 569

Query: 86  QVARELDLASFIR 98
           Q A E  L S+I+
Sbjct: 570 QHALEKGLQSYIQ 582


>gi|218283083|ref|ZP_03489178.1| hypothetical protein EUBIFOR_01764 [Eubacterium biforme DSM 3989]
 gi|218216152|gb|EEC89690.1| hypothetical protein EUBIFOR_01764 [Eubacterium biforme DSM 3989]
          Length = 81

 Score = 40.0 bits (92), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 11 KRIGYAFANRSLLEKALTHSSIS---HSYQESYERLEFLGDRILGLLISTLLF 60
          K  GY + N  +  +A THSS +   H   +  ERLEF+GD +L +  +T LF
Sbjct: 9  KANGYKYKNEDIYLEACTHSSYANEHHRQMDDNERLEFMGDSVLQIWSATQLF 61


>gi|294881176|ref|XP_002769282.1| hypothetical protein Pmar_PMAR007696 [Perkinsus marinus ATCC 50983]
 gi|239872560|gb|EER02000.1| hypothetical protein Pmar_PMAR007696 [Perkinsus marinus ATCC 50983]
          Length = 1394

 Score = 40.0 bits (92), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 64/139 (46%), Gaps = 31/139 (22%)

Query: 14   GYAFANRS-LLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71
            GY F     LL ++LTH+S+ S S   S ERLE++GD +LG ++   LF      K    
Sbjct: 1136 GYVFEKHPWLLTESLTHASVTSVSASYSNERLEWIGDAVLGAVVLQWLFKLEKPPKN--- 1192

Query: 72   SVRFNSLVSAETCS----QVARE----LDLASFIRVSSDLRKDVCSFMTSI--------- 114
                    +A TC+    +VA E     DL  F   S+ L + V  F+  +         
Sbjct: 1193 ---IVEAFTANTCNAHLAKVAVERLGVPDL--FNAFSAPLLRAVNRFVNELFSGRAVVRR 1247

Query: 115  ----QADVVESLIAALYLD 129
                 AD VE++I A++LD
Sbjct: 1248 GPKPLADCVEAIIGAVWLD 1266


>gi|15221749|ref|NP_173854.1| NFD2 (NUCLEAR FUSION DEFECTIVE 2); RNA binding / ribonuclease III
           [Arabidopsis thaliana]
 gi|9743333|gb|AAF97957.1|AC000103_7 F21J9.11 [Arabidopsis thaliana]
 gi|15010594|gb|AAK73956.1| At1g24450/F21J9_210 [Arabidopsis thaliana]
 gi|20334854|gb|AAM16183.1| At1g24450/F21J9_210 [Arabidopsis thaliana]
 gi|332192410|gb|AEE30531.1| nuclear fusion defective 2 protein /ribonuclease III [Arabidopsis
           thaliana]
          Length = 191

 Score = 40.0 bits (92), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 20/151 (13%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L+ +IGY F N +LL +A+TH+S S   QE+ + L   G  I+   +S         AK+
Sbjct: 51  LQTQIGYKFNNINLLRRAMTHASFS---QENNKALSIFGTHIIETAVSLQFL-----AKD 102

Query: 69  GELSVR-FNSLVS-----AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            ++S +    L+S       +C+     L L   IRVS+  + D  +  ++I      ++
Sbjct: 103 IDISSKALGRLISEVSNVESSCALDGDRLGLGKIIRVST--KTDASN--SAILCTGFRAI 158

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153
             A+ +D G       +  +WK    ++G+ 
Sbjct: 159 FGAIAIDAG--TVDEAIKVFWKVHGARAGRL 187


>gi|58264874|ref|XP_569593.1| hypothetical protein CNC03670 [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|57225825|gb|AAW42286.1| hypothetical protein CNC03670 [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 875

 Score = 40.0 bits (92), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 21/107 (19%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF----NSLVS 80
           +ALT  S  +    +YERLE LGD +L   I+  ++ H   A   E S++     + LVS
Sbjct: 454 QALTAPSSQNVTPWTYERLEILGDTLLKFFITIHVYLHGGGANSREDSLKVWQDRHKLVS 513

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
             T +  A +L L  F                 + AD+VE++I A Y
Sbjct: 514 NRTLTANAIKLGLVEF-----------------LLADIVEAIIGASY 543


>gi|134109497|ref|XP_776863.1| hypothetical protein CNBC3540 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50259543|gb|EAL22216.1| hypothetical protein CNBC3540 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 875

 Score = 40.0 bits (92), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 21/107 (19%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF----NSLVS 80
           +ALT  S  +    +YERLE LGD +L   I+  ++ H   A   E S++     + LVS
Sbjct: 454 QALTAPSSQNVTPWTYERLEILGDTLLKFFITIHVYLHGGGANSREDSLKVWQDRHKLVS 513

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
             T +  A +L L  F                 + AD+VE++I A Y
Sbjct: 514 NRTLTANAIKLGLVEF-----------------LLADIVEAIIGASY 543


>gi|302412697|ref|XP_003004181.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
 gi|261356757|gb|EEY19185.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
          Length = 1240

 Score = 40.0 bits (92), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLF 60
           LE+ I Y F  + LL +++TH+S +  +     ERLEFLGD IL  ++ + LF
Sbjct: 937 LEELIDYTFTKKILLIESITHASFTAGHVNGCLERLEFLGDAILDDIVVSHLF 989


>gi|321456688|gb|EFX67789.1| hypothetical protein DAPPUDRAFT_261055 [Daphnia pulex]
          Length = 279

 Score = 40.0 bits (92), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 6/81 (7%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHFD 64
           + +E  +GY F ++  L+  LTH S + +    E  +RLE LGD +LG L+  + +    
Sbjct: 75  AVIETTLGYEFRHKENLKLPLTHISTNPNKVPSEDSDRLETLGDILLGTLVMAICYTTCP 134

Query: 65  SAKEGELSVRFNSLVSAETCS 85
           +   GEL+    +L S  TC+
Sbjct: 135 TYGAGELT----NLTSMITCN 151


>gi|297851136|ref|XP_002893449.1| hypothetical protein ARALYDRAFT_472903 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297339291|gb|EFH69708.1| hypothetical protein ARALYDRAFT_472903 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 190

 Score = 40.0 bits (92), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 12/153 (7%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           A   +TL+ +IGY F N +LL +A+TH+S S   QE+ + L   G  I+   +S L F  
Sbjct: 44  ATDLATLQTQIGYKFNNTNLLRRAMTHASFS---QENNKALSIFGTNIIETSVS-LQFLA 99

Query: 63  FDSAKEGELSVRFNSLVSA--ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            D     +   R  + VS    +C+     L L   IRVS   + D  +  ++I      
Sbjct: 100 KDIDISSKALRRLIAQVSNVESSCALDGDRLGLGKIIRVSP--KTDASN--SAILCAGFR 155

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153
           ++  A+ +D G+      +  +WK    + G+ 
Sbjct: 156 AIFGAIAIDTGM--VDEAIKVFWKVHGDRPGRL 186


>gi|126659516|ref|ZP_01730648.1| ribonuclease III (rnc) [Cyanothece sp. CCY0110]
 gi|126619155|gb|EAZ89892.1| ribonuclease III (rnc) [Cyanothece sp. CCY0110]
          Length = 328

 Score = 39.7 bits (91), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 15/145 (10%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTLLFNHF 63
           S ++++I + F N  LL  +L+  S      +     ERLE LG+ +L L+I   L++HF
Sbjct: 6   SLVQEKISFNFKNPELLFLSLSDPSYGKQINQPGSDNERLESLGETVLDLIIIDYLYHHF 65

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLA---SFIRVSSD---LR-KDVCSFMTSIQA 116
                 +++   + L   E  + +   L L     F+ V+ +   LR K    F  S++A
Sbjct: 66  PYLTISKMTALRDKLSEKERLTNLWFGLGLGESYPFLDVNEERHRLRVKSSNPFEKSLKA 125

Query: 117 DVVESLIAALYLDGGIEVAGTFVDK 141
                L+ A+++D G   +  +V+K
Sbjct: 126 -----LVGAIHIDRGFSQSYNWVNK 145


>gi|296089027|emb|CBI38730.3| unnamed protein product [Vitis vinifera]
          Length = 1474

 Score = 39.7 bits (91), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 3/90 (3%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            L+  I Y      +LE ALT +S   ++   YER E LGD  L  ++S  LF  +    E
Sbjct: 1358 LKDVINYPVPAAKILE-ALTAASCQETF--CYERAELLGDAYLKWVVSRFLFLKYPQKHE 1414

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIR 98
            G+L+     +VS     Q A    L S+I+
Sbjct: 1415 GQLTRMRQQMVSNMVLYQSALCKGLQSYIQ 1444


>gi|154149851|ref|YP_001403469.1| ribonuclease III [Candidatus Methanoregula boonei 6A8]
 gi|153998403|gb|ABS54826.1| ribonuclease III [Methanoregula boonei 6A8]
          Length = 154

 Score = 39.7 bits (91), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 6/128 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLLFNH 62
           S LE R+G+   +R++L+ ALT  +  +    +  +  + L  +GD +LG +++T L+  
Sbjct: 6   SELETRLGFTIKDRTILDAALTRQAYINENPTAGNDCMDPLATVGDAVLGAVVATRLYES 65

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV-ES 121
               K G L+      V+ +     A +  L  FIR      K+      S   D   E+
Sbjct: 66  GIRDK-GTLTSEKIRGVNRDKTRAFAEKFQLHKFIRWGKGEEKNKVWEQGSQAFDAAFEA 124

Query: 122 LIAALYLD 129
           LI A++LD
Sbjct: 125 LIGAVFLD 132


>gi|313212467|emb|CBY36441.1| unnamed protein product [Oikopleura dioica]
          Length = 2196

 Score = 39.7 bits (91), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 1/108 (0%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            L+  + Y F    L   AL     +   ++++ERLEFLGD +L  L+   L+N   +A +
Sbjct: 1894 LQNELEYTFKTPHLCRLALAKKKYTKDPKDNFERLEFLGDAVLDYLVVDELYNRRSAALD 1953

Query: 69   -GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
             G+L+    S+ S      +A  + L     + +   KD  S M  ++
Sbjct: 1954 SGQLTDLKQSITSNNLFGSLAFCMGLPQSTLMKASAAKDHISCMYKLE 2001


>gi|149751348|ref|XP_001497601.1| PREDICTED: adenosine deaminase, RNA-specific [Equus caballus]
          Length = 1145

 Score = 39.7 bits (91), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  T L E  H K G + E+++  R GP HDP+F   V +           SK+ A+Q+
Sbjct: 558 KNPVTTLLECVH-KLGSSCEFRLLSREGPAHDPKFQYCVAMGTHTFPTASAPSKKVAKQM 616

Query: 215 AAAEVLK 221
           AA E +K
Sbjct: 617 AAEEAMK 623


>gi|147856819|emb|CAN79168.1| hypothetical protein VITISV_028064 [Vitis vinifera]
          Length = 292

 Score = 39.7 bits (91), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
           R   KT LQE  H K    PEY  T + GP H+P F   V + GL+
Sbjct: 8   REMNKTRLQELCHRKRWNPPEYS-TRKDGPPHNPTFXATVSVGGLS 52


>gi|310794561|gb|EFQ30022.1| RNase3 domain-containing protein [Glomerella graminicola M1.001]
          Length = 334

 Score = 39.7 bits (91), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 11/138 (7%)

Query: 17  FANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
            +N  L   A TH  ++ +  + SY+RLE+LGD  L L+ S+L+F  F     G+ S   
Sbjct: 62  ISNPVLEMAAFTHVGMAKTKTDLSYDRLEWLGDAYLELISSSLIFQTFGGLPTGKCSQLR 121

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVC-------SFMTSIQADVVESLIAALYL 128
             L+      + +    L    ++ S+ R +           +  +  D+ E+ +AA+ L
Sbjct: 122 ELLIRNSNLGEYSAHYKLFERAKLPSEYRPNGTLPAMAKPHEIQKVHGDLFEAYVAAIAL 181

Query: 129 D---GGIEVAGTFVDKYW 143
                G+  A  ++   W
Sbjct: 182 SDPVSGLSRAAEWLKTLW 199


>gi|169610828|ref|XP_001798832.1| hypothetical protein SNOG_08521 [Phaeosphaeria nodorum SN15]
 gi|160702165|gb|EAT83689.2| hypothetical protein SNOG_08521 [Phaeosphaeria nodorum SN15]
          Length = 1443

 Score = 39.7 bits (91), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 60/146 (41%), Gaps = 11/146 (7%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66
            +E +  Y F    LL  A  H S    ++   SY+RLEFLGD +L +     LF  +   
Sbjct: 1165 IEMKHPYRFRYPRLLRSAFIHPSQPFMWENIPSYQRLEFLGDSLLDMAFIMHLFYKYPDK 1224

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ------ADVVE 120
                L+     +VS +    V    D    +  +         +  S+       ADV+E
Sbjct: 1225 DPQWLTEHKTPMVSNKFLGAVQIR-DYVYEVEEAEREANGAVDYWVSVSEPPKCLADVIE 1283

Query: 121  SLIAALYLDGGIE--VAGTFVDKYWK 144
            + +AA+++D   +  V   F D + K
Sbjct: 1284 AFVAAIFVDSEFDFNVVQKFFDLHLK 1309


>gi|313224452|emb|CBY20242.1| unnamed protein product [Oikopleura dioica]
          Length = 2082

 Score = 39.7 bits (91), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 1/108 (0%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            L+  + Y F    L   AL     +   ++++ERLEFLGD +L  L+   L+N   +A +
Sbjct: 1882 LQNELEYTFKTPHLCRLALAKKKYTKDPKDNFERLEFLGDAVLDYLVVDELYNRRSAALD 1941

Query: 69   -GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
             G+L+    S+ S      +A  + L     + +   KD  S M  ++
Sbjct: 1942 SGQLTDLKQSITSNNLFGSLAFCMGLPQSTLMKASAAKDHISCMYKLE 1989


>gi|169612533|ref|XP_001799684.1| hypothetical protein SNOG_09389 [Phaeosphaeria nodorum SN15]
 gi|111062461|gb|EAT83581.1| hypothetical protein SNOG_09389 [Phaeosphaeria nodorum SN15]
          Length = 474

 Score = 39.7 bits (91), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 13/139 (9%)

Query: 22  LLEKALTHSSIS------HSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           L E   TH SI       H + +    YERLE+LGD  + L+ S  L+N F      +L 
Sbjct: 162 LQEAVFTHRSIHANNVNVHQHVDFGLDYERLEYLGDAYIELIASRALYNRFPHVDVPQLC 221

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL---D 129
                LV     ++ +        ++   +  K+  ++   + AD+ E+ +A + L   +
Sbjct: 222 SWRERLVENVALAKFSEAYGFPDQLKRKVEFDKNSKAWRKVV-ADIFEAYVAGVVLSDPE 280

Query: 130 GGIEVAGTFVDKYWKQRAL 148
            G   A  ++D+ W  + L
Sbjct: 281 NGFATAEKWLDELWASQLL 299


>gi|301774246|ref|XP_002922574.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-specific
           adenosine deaminase-like [Ailuropoda melanoleuca]
          Length = 1144

 Score = 39.7 bits (91), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  T L E  H K G + E+++  R GP HDP+F   V +           SK+ A+Q+
Sbjct: 560 KNPVTTLLECVH-KLGSSCEFRLLSREGPAHDPKFQYCVAMGAHTFPTASAPSKKVAKQM 618

Query: 215 AAAEVLK 221
           AA E +K
Sbjct: 619 AAEEAVK 625


>gi|302808147|ref|XP_002985768.1| hypothetical protein SELMODRAFT_122841 [Selaginella moellendorffii]
 gi|300146677|gb|EFJ13346.1| hypothetical protein SELMODRAFT_122841 [Selaginella moellendorffii]
          Length = 219

 Score = 39.7 bits (91), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 8/73 (10%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L++++GY F N+ +L  AL+     H    ++ RLEFLGD +L  L++  L   F     
Sbjct: 77  LQEKLGYQFRNKQVLRVALSF----HDDNFTFRRLEFLGDAVLDYLVTRHLVRSFPDQSA 132

Query: 69  GELSVRFNSLVSA 81
           G    R N++  A
Sbjct: 133 G----RHNTIKQA 141


>gi|154301554|ref|XP_001551189.1| hypothetical protein BC1G_10104 [Botryotinia fuckeliana B05.10]
 gi|150855766|gb|EDN30958.1| hypothetical protein BC1G_10104 [Botryotinia fuckeliana B05.10]
          Length = 1842

 Score = 39.7 bits (91), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 7/120 (5%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66
            +E +  Y F +  LL  A  H +    Y++   Y+RLEFLGD +L +     LF++  + 
Sbjct: 1539 VEMKHPYHFKHPRLLRSAFIHPAYLFIYEQIPCYQRLEFLGDSLLDMACVNFLFHNHPTK 1598

Query: 67   KEGELSVRFNSLVSAETCSQVARELDL-ASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
                L+    ++VS +    +  +L      + + S ++K +  +     +D+ E+LI A
Sbjct: 1599 DPQWLTEHKMAIVSNQFLGALCVKLGFHKHLLTLDSQVQKMIADY----SSDINEALIQA 1654


>gi|254411973|ref|ZP_05025748.1| RNase3 domain protein [Microcoleus chthonoplastes PCC 7420]
 gi|196180939|gb|EDX75928.1| RNase3 domain protein [Microcoleus chthonoplastes PCC 7420]
          Length = 317

 Score = 39.3 bits (90), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 66/140 (47%), Gaps = 7/140 (5%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTLLFNHFD 64
           +LE +IG  F +   L  AL H S +    ES    ERL+FLGD I+ L+I+  L+++  
Sbjct: 7   SLENQIGIQFKHSDTLRLALMHRSYAEQIGESEQNNERLKFLGDAIVNLVITDYLYHNCP 66

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLA---SFIRVSSDLRKDVCSFMTSIQADVVES 121
             +        + LV  +  +++  +L L     F+ ++ +  +         +  ++ +
Sbjct: 67  YLEVSNFKGLRDKLVEGQRLTKLWYQLGLGEGYPFLGLTQERHRLRLQNHNPFEEALI-A 125

Query: 122 LIAALYLDGGIEVAGTFVDK 141
           L+ A++ D G   A  ++ K
Sbjct: 126 LVGAIHQDRGFSQARNWLVK 145


>gi|151940843|gb|EDN59225.1| YmL15 [Saccharomyces cerevisiae YJM789]
          Length = 234

 Score = 39.3 bits (90), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 14/141 (9%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH---FDSAKE 68
           + G   +N  +L+  LTH S +H  +   E+L  LG + L L        +    +S + 
Sbjct: 58  KYGINLSNELILQ-CLTHKSFAHGSKPYNEKLNLLGAQFLKLQTCIHSLKNGSPAESCEN 116

Query: 69  GELSVRFNS--------LVSAETCSQVARELDLASFI--RVSSDLRKDVCSFMTSIQADV 118
           G+LS++F++        L S  T     +  +L  FI  ++   ++    +  T+I A V
Sbjct: 117 GQLSLQFSNLGTKFAKELTSKNTACTFVKLHNLGPFIFWKMRDPIKDGHINGETTIFASV 176

Query: 119 VESLIAALYLDGGIEVAGTFV 139
           + + I A+    G E A  F+
Sbjct: 177 LNAFIGAILSTNGSEKAAKFI 197


>gi|291397874|ref|XP_002715382.1| PREDICTED: adenosine deaminase, RNA-specific [Oryctolagus
           cuniculus]
          Length = 1150

 Score = 39.3 bits (90), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E  H K G + E+++  + GP HDP+F   V +           SK+ A+Q+AA E
Sbjct: 564 TTLLECVH-KLGSSCEFRLLSKEGPAHDPKFQYCVAVGSQTFPTASAPSKKVAKQMAAEE 622

Query: 219 VLK 221
            +K
Sbjct: 623 AMK 625


>gi|157377514|ref|YP_001476114.1| hypothetical protein Ssed_4384 [Shewanella sediminis HAW-EB3]
 gi|157319888|gb|ABV38986.1| conserved hypothetical protein [Shewanella sediminis HAW-EB3]
          Length = 300

 Score = 39.3 bits (90), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 22/134 (16%)

Query: 22  LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
           LL    T  ++ H  +   +  EF+G+RIL   +ST             +S +FN L   
Sbjct: 111 LLPLPYTEEAVKHLSRRIIQVQEFMGERILLENVSTY------------VSCQFNELTEG 158

Query: 82  ETCSQVARE------LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG---I 132
           E  + VA+E      LD+ +    + +L +D+ +FM +I  + V+ +  A + D G   +
Sbjct: 159 EFLAAVAKEADCYLLLDINNAYVTAKNLNQDMQAFMEAIPVERVKQIHLAGFHDKGDFLL 218

Query: 133 EVAGTFVDK-YWKQ 145
           +     VDK  W++
Sbjct: 219 DAHNHPVDKDVWQE 232


>gi|190405368|gb|EDV08635.1| 60S ribosomal protein L15, mitochondrial precursor [Saccharomyces
           cerevisiae RM11-1a]
          Length = 234

 Score = 39.3 bits (90), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 14/141 (9%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH---FDSAKE 68
           + G   +N  +L+  LTH S +H  +   E+L  LG + L L        +    +S + 
Sbjct: 58  KYGINLSNELILQ-CLTHKSFAHGSKPYNEKLNLLGAQFLKLQTCIHSLKNGSPAESCEN 116

Query: 69  GELSVRFNS--------LVSAETCSQVARELDLASFI--RVSSDLRKDVCSFMTSIQADV 118
           G+LS++F++        L S  T     +  +L  FI  ++   ++    +  T+I A V
Sbjct: 117 GQLSLQFSNLGTKFAKELTSKNTACTFVKLHNLGPFIFWKMRDSIKDGHINGETTIFASV 176

Query: 119 VESLIAALYLDGGIEVAGTFV 139
           + + I A+    G E A  F+
Sbjct: 177 LNAFIGAILSTNGSEKAAKFI 197


>gi|225439221|ref|XP_002270719.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 581

 Score = 39.3 bits (90), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
           KT LQE  H K    PEY  T + GP H+P F   V + GL+
Sbjct: 3   KTRLQELCHRKRWNPPEYS-TRKDGPPHNPTFIATVSVGGLS 43


>gi|255543655|ref|XP_002512890.1| double-stranded RNA binding protein, putative [Ricinus communis]
 gi|223547901|gb|EEF49393.1| double-stranded RNA binding protein, putative [Ricinus communis]
          Length = 477

 Score = 39.3 bits (90), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 12/72 (16%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA----PAQGMDCSKRAAEQ 213
           K  LQE AH + G+      T RSGP H P FT  VE++G+     PA+    +K+ AE+
Sbjct: 92  KNLLQETAH-RAGLNLPVYTTIRSGPGHVPTFTCTVELAGMNFTGEPAK----TKKQAEK 146

Query: 214 ---VAAAEVLKR 222
              +AA   LKR
Sbjct: 147 NAAIAAWSALKR 158


>gi|218186287|gb|EEC68714.1| hypothetical protein OsI_37196 [Oryza sativa Indica Group]
          Length = 2010

 Score = 39.3 bits (90), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 4/61 (6%)

Query: 158  KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF--TVVVEISGLAPAQGMDCSKRAAEQVA 215
            K+ LQE+A      TPEY  TF+ GP H+P F  TVV+  +      G   +++AAEQ A
Sbjct: 1270 KSRLQEYAQKTGLQTPEYH-TFKEGPSHEPVFKSTVVINNTSYDSLPGF-FNRKAAEQSA 1327

Query: 216  A 216
            A
Sbjct: 1328 A 1328


>gi|323332393|gb|EGA73802.1| Mrpl15p [Saccharomyces cerevisiae AWRI796]
 gi|323353848|gb|EGA85703.1| Mrpl15p [Saccharomyces cerevisiae VL3]
          Length = 248

 Score = 39.3 bits (90), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 14/141 (9%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH---FDSAKE 68
           + G   +N  +L+  LTH S +H  +   E+L  LG + L L        +    +S + 
Sbjct: 72  KYGINLSNELILQ-CLTHKSFAHGSKPYNEKLNLLGAQFLKLQTCIHSLKNGSPAESCEN 130

Query: 69  GELSVRFNS--------LVSAETCSQVARELDLASFI--RVSSDLRKDVCSFMTSIQADV 118
           G+LS++F++        L S  T     +  +L  FI  ++   ++    +  T+I A V
Sbjct: 131 GQLSLQFSNLGTKFAKELTSKNTACTFVKLHNLGPFIFWKMRDPIKDGHINGETTIFASV 190

Query: 119 VESLIAALYLDGGIEVAGTFV 139
           + + I A+    G E A  F+
Sbjct: 191 LNAFIGAILSTNGSEKAAKFI 211


>gi|207342841|gb|EDZ70480.1| YLR312W-Ap-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256270407|gb|EEU05604.1| Mrpl15p [Saccharomyces cerevisiae JAY291]
 gi|259148294|emb|CAY81541.1| Mrpl15p [Saccharomyces cerevisiae EC1118]
 gi|323336359|gb|EGA77627.1| Mrpl15p [Saccharomyces cerevisiae Vin13]
 gi|323347380|gb|EGA81652.1| Mrpl15p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 253

 Score = 39.3 bits (90), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 14/141 (9%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH---FDSAKE 68
           + G   +N  +L+  LTH S +H  +   E+L  LG + L L        +    +S + 
Sbjct: 77  KYGINLSNELILQ-CLTHKSFAHGSKPYNEKLNLLGAQFLKLQTCIHSLKNGSPAESCEN 135

Query: 69  GELSVRFNS--------LVSAETCSQVARELDLASFI--RVSSDLRKDVCSFMTSIQADV 118
           G+LS++F++        L S  T     +  +L  FI  ++   ++    +  T+I A V
Sbjct: 136 GQLSLQFSNLGTKFAKELTSKNTACTFVKLHNLGPFIFWKMRDPIKDGHINGETTIFASV 195

Query: 119 VESLIAALYLDGGIEVAGTFV 139
           + + I A+    G E A  F+
Sbjct: 196 LNAFIGAILSTNGSEKAAKFI 216


>gi|134079420|emb|CAK40801.1| unnamed protein product [Aspergillus niger]
          Length = 1379

 Score = 39.3 bits (90), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNH 62
            +E+ +GY F ++SL  +++TH S +   Q  SY RL FLG  +L  ++ + L  H
Sbjct: 1095 MEELLGYTFTDKSLAVESMTHPSCTGLVQTTSYRRLSFLGASVLEWIVVSYLHRH 1149


>gi|13236212|gb|AAK16101.1|AF291875_1 RNA adenosine deaminase 1 [Mus musculus]
          Length = 634

 Score = 39.3 bits (90), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E  H K G + E+++  + GP HDP+F   V +           SK+ A+Q+AA E
Sbjct: 52  TTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQMAAEE 110

Query: 219 VLK 221
            +K
Sbjct: 111 AMK 113


>gi|302685924|ref|XP_003032642.1| hypothetical protein SCHCODRAFT_53921 [Schizophyllum commune H4-8]
 gi|300106336|gb|EFI97739.1| hypothetical protein SCHCODRAFT_53921 [Schizophyllum commune H4-8]
          Length = 368

 Score = 39.3 bits (90), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 67/166 (40%), Gaps = 16/166 (9%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQE---------SYERLEFLGDRILGLLISTLLFNHF 63
           +G       L+++A TH+S     +E         +  +LE +G+ ++GL  S  L   +
Sbjct: 68  LGNVLTTPELVQQACTHASFVALQKEVNPNAPAPATNAQLEQVGNALMGLFASEYLAAKY 127

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIR----VSSDLRKDVCSFMTSIQADVV 119
                  L     + V   TC+ VA+E+     +R    +S +         T   A + 
Sbjct: 128 PYLPTKVLKAAVTAHVGPLTCANVAQEMGATQLLRWNRTISRNPSHPQVMLHTDALASIP 187

Query: 120 ESLIAALYLDGGIEVAGTFVDKYW--KQRALKSG-KFRRDAKTELQ 162
            +L A +Y    +  A  FV  ++  +Q  L+S  KFR      LQ
Sbjct: 188 RALTALIYQKRSLPAARQFVHSFFLSRQVDLRSMLKFRNPKWALLQ 233


>gi|158706450|sp|A2QX45|DCL22_ASPNC RecName: Full=Dicer-like protein 2-2; Includes: RecName:
            Full=Endoribonuclease dcl2-2; Includes: RecName:
            Full=ATP-dependent helicase dcl2-2
          Length = 1362

 Score = 39.3 bits (90), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNH 62
            +E+ +GY F ++SL  +++TH S +   Q  SY RL FLG  +L  ++ + L  H
Sbjct: 1078 MEELLGYTFTDKSLAVESMTHPSCTGLVQTTSYRRLSFLGASVLEWIVVSYLHRH 1132


>gi|73961632|ref|XP_547564.2| PREDICTED: similar to adenosine deaminase, RNA-specific isoform b
           [Canis familiaris]
          Length = 1119

 Score = 39.3 bits (90), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  T L E  H K G + E+++  R GP HDP+F   V +           SK+ A+Q+
Sbjct: 532 KNPVTTLLECVH-KLGSSCEFRLLSREGPAHDPKFQYCVAMGAHTFPTVSAPSKKVAKQM 590

Query: 215 AAAEVLK 221
           AA E +K
Sbjct: 591 AAEEAMK 597


>gi|116785242|gb|ABK23649.1| unknown [Picea sitchensis]
          Length = 188

 Score = 39.3 bits (90), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 3/92 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L+ +I Y F ++SLL K +TH+S S    ++   L  LG  I+   IS    +   +  +
Sbjct: 43  LQTKIKYQFKDKSLLAKTMTHASFS---LDNNAVLNILGSEIIEAAISFHYLSKNSTISK 99

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVS 100
           G+L+ +   + +    S+ A +L L   IRV+
Sbjct: 100 GDLTSQKAKISNCSALSKDAFDLQLNELIRVA 131


>gi|13236216|gb|AAK16103.1|AF291877_1 RNA adenosine deaminase 1 [Mus musculus]
          Length = 660

 Score = 39.3 bits (90), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E  H K G + E+++  + GP HDP+F   V +           SK+ A+Q+AA E
Sbjct: 52  TTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQMAAEE 110

Query: 219 VLK 221
            +K
Sbjct: 111 AMK 113


>gi|317033008|ref|XP_001394728.2| hypothetical protein ANI_1_2258094 [Aspergillus niger CBS 513.88]
          Length = 889

 Score = 38.9 bits (89), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNH 62
           +E+ +GY F ++SL  +++TH S +   Q  SY RL FLG  +L  ++ + L  H
Sbjct: 605 MEELLGYTFTDKSLAVESMTHPSCTGLVQTTSYRRLSFLGASVLEWIVVSYLHRH 659


>gi|296085908|emb|CBI31232.3| unnamed protein product [Vitis vinifera]
          Length = 494

 Score = 38.9 bits (89), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
           KT LQE  H K    PEY  T + GP H+P F   V + GL+
Sbjct: 3   KTRLQELCHRKRWNPPEYS-TRKDGPPHNPTFIATVSVGGLS 43


>gi|72157362|ref|XP_797998.1| PREDICTED: similar to MGC53736 protein [Strongylocentrotus
           purpuratus]
 gi|115963208|ref|XP_001187016.1| PREDICTED: similar to MGC53736 protein [Strongylocentrotus
           purpuratus]
          Length = 306

 Score = 38.9 bits (89), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 2/62 (3%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           LQE   AK GVTP Y    + G  H P+FT+    +G     G   SK+ A+Q AA +VL
Sbjct: 11  LQELC-AKKGVTPVYDTIGQEGASHQPKFTIRC-TAGDVVGNGQGPSKKVAKQSAAEDVL 68

Query: 221 KR 222
           ++
Sbjct: 69  QQ 70



 Score = 38.9 bits (89), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 1/62 (1%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           ELQE         PEY+    SGP H+ RF + V +      QG+D SKR A++ AA+ +
Sbjct: 95  ELQELVTCMGWRKPEYEALEESGPPHNRRFVISVSVDKYK-EQGVDQSKRLAKRAAASAM 153

Query: 220 LK 221
           L+
Sbjct: 154 LE 155


>gi|74192520|dbj|BAE43048.1| unnamed protein product [Mus musculus]
          Length = 705

 Score = 38.9 bits (89), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E  H K G + E+++  + GP HDP+F   V +           SK+ A+Q+AA E
Sbjct: 123 TTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQMAAEE 181

Query: 219 VLK 221
            +K
Sbjct: 182 AMK 184


>gi|149048040|gb|EDM00616.1| adenosine deaminase, RNA-specific, isoform CRA_a [Rattus
           norvegicus]
          Length = 634

 Score = 38.9 bits (89), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E  H K G + E+++  + GP HDP+F   V +           SK+ A+Q+AA E
Sbjct: 52  TTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 110

Query: 219 VLK 221
            +K
Sbjct: 111 AMK 113


>gi|218186280|gb|EEC68707.1| hypothetical protein OsI_37189 [Oryza sativa Indica Group]
          Length = 474

 Score = 38.9 bits (89), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 4/61 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF--TVVVEISGLAPAQGMDCSKRAAEQVA 215
           K+ LQE+A      TPEY  TF+ GP H+P F  TVV+  +      G   +++AAEQ A
Sbjct: 35  KSRLQEYAQKAGLQTPEYH-TFKEGPSHEPVFKSTVVINNTSYDSLPGFF-NRKAAEQSA 92

Query: 216 A 216
           A
Sbjct: 93  A 93


>gi|148683241|gb|EDL15188.1| adenosine deaminase, RNA-specific, isoform CRA_d [Mus musculus]
          Length = 674

 Score = 38.9 bits (89), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E  H K G + E+++  + GP HDP+F   V +           SK+ A+Q+AA E
Sbjct: 92  TTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQMAAEE 150

Query: 219 VLK 221
            +K
Sbjct: 151 AMK 153


>gi|321253833|ref|XP_003192867.1| hypothetical protein CGB_C5530W [Cryptococcus gattii WM276]
 gi|317459336|gb|ADV21080.1| hypothetical protein CNC03670 [Cryptococcus gattii WM276]
          Length = 916

 Score = 38.9 bits (89), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 9/88 (10%)

Query: 20  RSLLE-----KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
           RSLL      +ALT  S  +    +YERLE LGD +L   I+  ++ H   A   E S++
Sbjct: 440 RSLLHPELALQALTAPSSVNVTPWTYERLEILGDTLLKFFITIHVYLHGGGANSREDSLK 499

Query: 75  F----NSLVSAETCSQVARELDLASFIR 98
                + LVS  T +  A +L L  ++R
Sbjct: 500 VWQDRHKLVSNRTLTANAIKLGLVDYVR 527


>gi|322518582|sp|B7E321|DRB5_ORYSJ RecName: Full=Double-stranded RNA-binding protein 5; AltName:
           Full=dsRNA-binding protein 2; Short=OsDRB2; AltName:
           Full=dsRNA-binding protein 5
 gi|215765071|dbj|BAG86768.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 404

 Score = 38.9 bits (89), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           K  LQE AH      P Y  T RSGP H P F+  VE++G++ A     +K+ AE+ AA
Sbjct: 89  KNLLQETAHRAGLKLPVY-TTVRSGPGHSPVFSSTVELAGMSFAGDPAKTKKHAEKNAA 146



 Score = 38.1 bits (87), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK-RAAEQVAA 216
           K +LQE A       P Y  T R GPDH PRF   V  +G       +C+  R AE  AA
Sbjct: 3   KNQLQELAQRSCFSLPSYVCT-REGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAAA 61

Query: 217 AEVLKR 222
              L R
Sbjct: 62  EVALAR 67


>gi|156032684|ref|XP_001585179.1| hypothetical protein SS1G_13747 [Sclerotinia sclerotiorum 1980]
 gi|154699150|gb|EDN98888.1| hypothetical protein SS1G_13747 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1867

 Score = 38.9 bits (89), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 2/48 (4%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLL 54
            +E +  Y F    LL  A TH +   SY++  SY+RLEFLGD +L ++
Sbjct: 1573 VETKHPYHFKYPRLLRSASTHPAYPFSYEQIPSYQRLEFLGDALLDMV 1620


>gi|148683240|gb|EDL15187.1| adenosine deaminase, RNA-specific, isoform CRA_c [Mus musculus]
          Length = 700

 Score = 38.9 bits (89), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E  H K G + E+++  + GP HDP+F   V +           SK+ A+Q+AA E
Sbjct: 92  TTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQMAAEE 150

Query: 219 VLK 221
            +K
Sbjct: 151 AMK 153


>gi|238492895|ref|XP_002377684.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
 gi|220696178|gb|EED52520.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
          Length = 790

 Score = 38.9 bits (89), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 9/78 (11%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNH--FDS 65
           LE  +GY F+++SL  +++TH S    Y   SY RL FLG  I+ L++   L     F S
Sbjct: 552 LEALLGYTFSDKSLAIESMTHPSCVGLYGTASYRRLSFLGAGIIELVVVRYLHRQKSFTS 611

Query: 66  AKEGELSVRFNSLVSAET 83
           +K      R  SL SA T
Sbjct: 612 SK------RLQSLKSAVT 623


>gi|224055781|ref|XP_002298650.1| predicted protein [Populus trichocarpa]
 gi|222845908|gb|EEE83455.1| predicted protein [Populus trichocarpa]
          Length = 357

 Score = 38.9 bits (89), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 12/72 (16%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA----PAQGMDCSKRAAEQ 213
           K  LQE AH + G+      T RSGP H P FT  VE++G+     PA+    +K+ AE+
Sbjct: 89  KNLLQETAH-RAGLNLPVYTTVRSGPGHVPVFTCTVELAGMNFTGEPAK----TKKQAEK 143

Query: 214 ---VAAAEVLKR 222
              +AA   LKR
Sbjct: 144 NAAIAAWSALKR 155



 Score = 35.4 bits (80), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           K +LQE A       P Y    R GPDH PRF   V  +G        C+     + AAA
Sbjct: 3   KNQLQELAQRSCFNLPSY-ACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61

Query: 218 EV 219
           EV
Sbjct: 62  EV 63


>gi|317156821|ref|XP_001826035.2| hypothetical protein AOR_1_660054 [Aspergillus oryzae RIB40]
          Length = 939

 Score = 38.5 bits (88), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 9/78 (11%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNH--FDS 65
           LE  +GY F+++SL  +++TH S    Y   SY RL FLG  I+ L++   L     F S
Sbjct: 701 LEALLGYTFSDKSLAIESMTHPSCVGLYGTASYRRLSFLGAGIIELVVVRYLHRQKSFTS 760

Query: 66  AKEGELSVRFNSLVSAET 83
           +K      R  SL SA T
Sbjct: 761 SK------RLQSLKSAVT 772


>gi|83774779|dbj|BAE64902.1| unnamed protein product [Aspergillus oryzae]
          Length = 1256

 Score = 38.5 bits (88), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 9/78 (11%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNH--FDS 65
            LE  +GY F+++SL  +++TH S    Y   SY RL FLG  I+ L++   L     F S
Sbjct: 1018 LEALLGYTFSDKSLAIESMTHPSCVGLYGTASYRRLSFLGAGIIELVVVRYLHRQKSFTS 1077

Query: 66   AKEGELSVRFNSLVSAET 83
            +K      R  SL SA T
Sbjct: 1078 SK------RLQSLKSAVT 1089


>gi|289620343|emb|CBI53201.1| unnamed protein product [Sordaria macrospora]
          Length = 345

 Score = 38.5 bits (88), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 29/182 (15%)

Query: 22  LLEKALTHSSISHSYQE------SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
           +L+ AL  ++++H  +       SYERLE++GD  L L+ S+ ++  F +   G+ + R 
Sbjct: 66  ILDPALKKAALTHPGKANNDPVASYERLEWIGDAYLELIASSFIYQTFPTLPAGKSAQRR 125

Query: 76  NSLVSAETCSQ--VARELDLASFIRVSSDLRKDVCSFMTS------IQADVVESLIAALY 127
             L+   T  +  V   LD  + I    ++   V     S      I  D+ E+ +  + 
Sbjct: 126 EMLIRNTTLGEFSVYYGLDNMADIPEEFNMEGRVGGTNASQKVRVKILGDLFEAYVGGVI 185

Query: 128 LD---GGIEVAGTFVDKYW----------KQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174
           L     GI+    ++   W          +++  KSG+   D KT L+    A+ GV  E
Sbjct: 186 LSDPANGIQRVSDWLKALWGPLMAEYIREEEKKSKSGQ-AHDPKTILEAAIGAR-GVKIE 243

Query: 175 YK 176
           YK
Sbjct: 244 YK 245


>gi|289807913|ref|ZP_06538542.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
          Typhi str. AG3]
          Length = 61

 Score = 38.5 bits (88), Expect = 0.71,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 30/45 (66%), Gaps = 3/45 (6%)

Query: 1  MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEF 45
          M+ +  + L++++GY F ++ LL++ALTH S S  +    ERLEF
Sbjct: 20 MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKHN---ERLEF 61


>gi|327274458|ref|XP_003221994.1| PREDICTED: double-stranded RNA-specific editase B2-like [Anolis
           carolinensis]
          Length = 714

 Score = 38.5 bits (88), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 16/92 (17%)

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTP--------------EYKVTFRSGPDHDPRF 189
           ++R L+ G      K +L  W    + VTP              +YK+  ++GP H P F
Sbjct: 71  RKRPLEEGNSGHFCKLQLI-WKKVSWSVTPKNALVQLHELKPGLQYKMVSQTGPVHAPVF 129

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V VE++GL   +G   +K+ A+  AA   LK
Sbjct: 130 AVAVEVNGLT-FEGTGPTKKKAKMRAAELALK 160


>gi|326921558|ref|XP_003207024.1| PREDICTED: double-stranded RNA-specific editase B2-like [Meleagris
           gallopavo]
          Length = 720

 Score = 38.5 bits (88), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 16/92 (17%)

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTP--------------EYKVTFRSGPDHDPRF 189
           ++R L+ G      K +L  W    + VTP              +YK+  ++GP H P F
Sbjct: 73  RKRPLEDGNNGHFCKLQLI-WKKVSWSVTPKNALVQLHELKPGLQYKMVSQTGPVHAPVF 131

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V VE++GL   +G   +K+ A+  AA   LK
Sbjct: 132 AVAVEVNGLT-FEGTGPTKKKAKMRAAELALK 162


>gi|308162643|gb|EFO65028.1| Dicer [Giardia lamblia P15]
          Length = 754

 Score = 38.5 bits (88), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 5/93 (5%)

Query: 35  SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLA 94
           S+   ++RLE LGD +LG +++  L   F +A  G L      LV  ET + + + L L 
Sbjct: 327 SHTNVFQRLELLGDAVLGFVVTARLLCLFPNASVGTLVDLKMELVRNETLNYLVQMLRLP 386

Query: 95  SFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
                S  L        +   AD+ E L+ +++
Sbjct: 387 QLAEFSGTLMAK-----SKTWADMYEELVGSVF 414


>gi|50286821|ref|XP_445840.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49525146|emb|CAG58759.1| unnamed protein product [Candida glabrata]
          Length = 226

 Score = 38.5 bits (88), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 69/145 (47%), Gaps = 17/145 (11%)

Query: 6   YSTLEKRIGYA-----FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGL---LIST 57
           ++++ +R+G+       ++ ++L+  LTH S +H  +   E+L  LG + L L   + S 
Sbjct: 57  HASVRERMGFQEHGIELSDAAILQ-CLTHKSFAHGSRPYNEKLNLLGSQYLKLQAAMHSV 115

Query: 58  LLFNHFDSAKEGELSVRFN-SLVSAETCSQ--VARELDLASFIRVSSDLRKDVCSFMTSI 114
              N F     G L    +  LVS +T ++  +A+ L+   F +VS  L        + +
Sbjct: 116 GPENSF-----GNLGTPVSKGLVSYQTAAEYVIAKNLEPLVFWKVSDPLNDGPIKGKSKV 170

Query: 115 QADVVESLIAALYLDGGIEVAGTFV 139
            + V+ S I A+ L  G + A  F+
Sbjct: 171 MSTVLNSFIGAILLQQGEKKASQFI 195


>gi|221361577|emb|CAX18337.1| dicel-like 2 [Nicotiana benthamiana]
          Length = 224

 Score = 38.5 bits (88), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 55/127 (43%), Gaps = 28/127 (22%)

Query: 41  ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
           E LE LGD  L    S  LF  +++  EG L+V+ NS++S     ++     +  FIR  
Sbjct: 22  ESLETLGDSFLKYAASIQLFKTYENHHEGLLTVKKNSIISNAALCKLGCARKIPGFIRNE 81

Query: 101 S-DLR--------KDVCSF-----MTSIQ--------------ADVVESLIAALYLDGGI 132
             DL+          V +F     M S++              ADVVE+LI A    GG 
Sbjct: 82  PFDLKGWLIPGDNSQVYNFDEEVLMPSVKMYSRGRQKTKSKRVADVVEALIGAFLSSGGE 141

Query: 133 EVAGTFV 139
             A +F+
Sbjct: 142 VAALSFM 148



 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 3/49 (6%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRIL 51
           +RY  LE  + Y F + SLL +ALTH S +       Y+RLEFLGD +L
Sbjct: 176 VRY--LESLLHYKFHDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDVVL 222


>gi|299756084|ref|XP_001829079.2| hypothetical protein CC1G_01759 [Coprinopsis cinerea okayama7#130]
 gi|298411515|gb|EAU92714.2| hypothetical protein CC1G_01759 [Coprinopsis cinerea okayama7#130]
          Length = 352

 Score = 38.5 bits (88), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 10/132 (7%)

Query: 16  AFANRSLLEKALTHSSI------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
             +N  L+ +  THSS+      S   Q   ERL +LG  +L  +++ LLF+     + G
Sbjct: 45  PISNTDLVLQIFTHSSLRTRLTCSSLDQYDNERLSWLGKHVLDSVVTELLFDTRPMLRAG 104

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA--DVVESLIAALY 127
           E+  R   L+  +   +      L   +R    LR+   S +T  Q   D+  +  A +Y
Sbjct: 105 EIVERKEELLCDDLFEEWVTHYGLLRKLRYDPVLRE--SSGITKPQETRDIFYAYTAGVY 162

Query: 128 LDGGIEVAGTFV 139
           LD G  V   ++
Sbjct: 163 LDSGAPVVREWI 174


>gi|321468486|gb|EFX79471.1| hypothetical protein DAPPUDRAFT_244860 [Daphnia pulex]
          Length = 118

 Score = 38.5 bits (88), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L EW   +    PEY+V  +SGP H   + +  ++S     +G+  SK+AA+  AA ++L
Sbjct: 52  LSEWRLTRHSTLPEYRVVRKSGPSHSKTYFMTCKLSERV-TEGVGKSKKAAKNDAAQKML 110

Query: 221 K 221
           +
Sbjct: 111 Q 111


>gi|224044691|ref|XP_002193461.1| PREDICTED: similar to adenosine deaminase, RNA-specific, B2
           [Taeniopygia guttata]
          Length = 744

 Score = 38.5 bits (88), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 16/92 (17%)

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTP--------------EYKVTFRSGPDHDPRF 189
           ++R L+ G      K +L  W    + VTP              +YK+  ++GP H P F
Sbjct: 98  RKRPLEEGNNGHFCKLQLI-WKKVSWSVTPKNALVQLHELKPGLQYKMVSQTGPVHAPVF 156

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V VE++GL   +G   +K+ A+  AA   LK
Sbjct: 157 AVAVEVNGLT-FEGTGPTKKKAKMRAAELALK 187


>gi|226507212|ref|NP_001141877.1| hypothetical protein LOC100274020 [Zea mays]
 gi|194706274|gb|ACF87221.1| unknown [Zea mays]
          Length = 392

 Score = 38.5 bits (88), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           K  LQE AH      P Y  T RSGP H P F+  VE++GL+ A     +K+ AE+ AA
Sbjct: 89  KNLLQETAHRAGLKLPAY-TTVRSGPGHSPVFSSTVELAGLSFAGDPARTKKQAEKNAA 146



 Score = 35.0 bits (79), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK-RAAEQVAA 216
           K +LQE A       P Y V  R GPDH PRF   V  +G        C+  R AE  AA
Sbjct: 3   KNQLQELAQRSCFSLPSY-VCTREGPDHAPRFRAAVTFNGETFEGPSGCTTLRQAEHAAA 61

Query: 217 AEVLKR 222
              L R
Sbjct: 62  EVALAR 67


>gi|222616496|gb|EEE52628.1| hypothetical protein OsJ_34969 [Oryza sativa Japonica Group]
          Length = 781

 Score = 38.5 bits (88), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 4/61 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF--TVVVEISGLAPAQGMDCSKRAAEQVA 215
           K+ LQE+A      TPEY  TF+ GP H+P F  TVV+  +      G   +++AAEQ A
Sbjct: 35  KSRLQEYAQKTGLQTPEYH-TFKEGPSHEPVFKSTVVINNTSYDSLPGF-FNRKAAEQSA 92

Query: 216 A 216
           A
Sbjct: 93  A 93


>gi|255633098|gb|ACU16904.1| unknown [Glycine max]
          Length = 188

 Score = 38.1 bits (87), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 4/94 (4%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           TL+K++GY F +  LL +A+TH+S S   +E+ +    LG  ++   +S  L +      
Sbjct: 47  TLQKQLGYTFKSIDLLRRAVTHASFS---EENNKAFAILGASVIETSVSFHLLSRDVDLS 103

Query: 68  EGELSVRFNSLVSAE-TCSQVARELDLASFIRVS 100
             EL+ R + + + + +C+     L L   +RVS
Sbjct: 104 SKELNRRLSQITNVDSSCAVDGTRLGLHKVVRVS 137


>gi|85083779|ref|XP_957185.1| hypothetical protein NCU01762 [Neurospora crassa OR74A]
 gi|7800875|emb|CAB91233.1| related to Ribonuclease III [Neurospora crassa]
 gi|28918272|gb|EAA27949.1| predicted protein [Neurospora crassa OR74A]
          Length = 352

 Score = 38.1 bits (87), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 17/139 (12%)

Query: 22  LLEKALTHSSISHSYQE------SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
           +L+ AL  ++++H  +       SYERLE++GD  L L+ S+ ++  F +   G+ + R 
Sbjct: 65  ILDPALKKAALTHPGKANNDPVASYERLEWIGDAYLELIASSFIYQTFPTLPAGKSAQRR 124

Query: 76  NSLVSAETCSQ--VARELDLASFIRVSSDLRKDVCSFMTS------IQADVVESLIAALY 127
             L+   T  +  V   LD  + I    ++   V     S      I  D+ E+ +  + 
Sbjct: 125 EMLIRNTTLGEFSVYYGLDKMADIPEEFNMEGRVGGTNASQKVRIKILGDLFEAYVGGVI 184

Query: 128 LD---GGIEVAGTFVDKYW 143
           L     GI+ A  ++   W
Sbjct: 185 LSDPANGIQRASDWLKALW 203


>gi|226371684|ref|NP_001033676.2| double-stranded RNA-specific adenosine deaminase isoform 2 [Mus
           musculus]
          Length = 930

 Score = 38.1 bits (87), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E  H K G + E+++  + GP HDP+F   V +           SK+ A+Q+AA E
Sbjct: 322 TTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQMAAEE 380

Query: 219 VLK 221
            +K
Sbjct: 381 AMK 383


>gi|88192985|pdb|2FFL|A Chain A, Crystal Structure Of Dicer From Giardia Intestinalis
 gi|88192986|pdb|2FFL|B Chain B, Crystal Structure Of Dicer From Giardia Intestinalis
 gi|88192987|pdb|2FFL|C Chain C, Crystal Structure Of Dicer From Giardia Intestinalis
 gi|88192988|pdb|2FFL|D Chain D, Crystal Structure Of Dicer From Giardia Intestinalis
 gi|158430470|pdb|2QVW|A Chain A, Structure Of Giardia Dicer Refined Against Twinned Data
 gi|158430471|pdb|2QVW|B Chain B, Structure Of Giardia Dicer Refined Against Twinned Data
 gi|158430472|pdb|2QVW|C Chain C, Structure Of Giardia Dicer Refined Against Twinned Data
 gi|158430473|pdb|2QVW|D Chain D, Structure Of Giardia Dicer Refined Against Twinned Data
          Length = 756

 Score = 38.1 bits (87), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 5/93 (5%)

Query: 35  SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLA 94
           S+ + ++RLE LGD +LG +++  L   F  A  G L      LV  E  + + + L L 
Sbjct: 329 SHTDVFQRLELLGDAVLGFIVTARLLCLFPDASVGTLVELKMELVRNEALNYLVQTLGLP 388

Query: 95  SFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
                S++L        +   AD+ E ++ +++
Sbjct: 389 QLAEFSNNLVAK-----SKTWADMYEEIVGSIF 416


>gi|159110564|ref|XP_001705536.1| Dicer [Giardia lamblia ATCC 50803]
 gi|229485333|sp|A8BQJ3|DCL_GIAIC RecName: Full=Endoribonuclease Dicer-like
 gi|157433622|gb|EDO77862.1| Dicer [Giardia lamblia ATCC 50803]
          Length = 754

 Score = 38.1 bits (87), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 5/93 (5%)

Query: 35  SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLA 94
           S+ + ++RLE LGD +LG +++  L   F  A  G L      LV  E  + + + L L 
Sbjct: 327 SHTDVFQRLELLGDAVLGFIVTARLLCLFPDASVGTLVELKMELVRNEALNYLVQTLGLP 386

Query: 95  SFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
                S++L        +   AD+ E ++ +++
Sbjct: 387 QLAEFSNNLVAK-----SKTWADMYEEIVGSIF 414


>gi|74188545|dbj|BAE28026.1| unnamed protein product [Mus musculus]
          Length = 930

 Score = 38.1 bits (87), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E  H K G + E+++  + GP HDP+F   V +           SK+ A+Q+AA E
Sbjct: 322 TTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQMAAEE 380

Query: 219 VLK 221
            +K
Sbjct: 381 AMK 383


>gi|30693732|ref|NP_198923.2| DRB5 (DSRNA-BINDING PROTEIN 5); double-stranded RNA binding
           [Arabidopsis thaliana]
 gi|75244423|sp|Q8GY79|DRB5_ARATH RecName: Full=Double-stranded RNA-binding protein 5; AltName:
           Full=dsRNA-binding protein 5; Short=AtDRB5
 gi|26450682|dbj|BAC42450.1| unknown protein [Arabidopsis thaliana]
 gi|32189297|gb|AAP75803.1| At5g41070 [Arabidopsis thaliana]
 gi|332007250|gb|AED94633.1| dsRNA-binding protein 5 [Arabidopsis thaliana]
          Length = 393

 Score = 38.1 bits (87), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           K +LQE A       P Y    R GPDH PRF   V  +G        CS     + AAA
Sbjct: 3   KNQLQELAQRSCFNLPSY-TCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAAA 61

Query: 218 EV 219
           EV
Sbjct: 62  EV 63


>gi|9759153|dbj|BAB09709.1| unnamed protein product [Arabidopsis thaliana]
          Length = 384

 Score = 38.1 bits (87), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           K +LQE A       P Y    R GPDH PRF   V  +G        CS     + AAA
Sbjct: 3   KNQLQELAQRSCFNLPSY-TCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAAA 61

Query: 218 EV 219
           EV
Sbjct: 62  EV 63


>gi|118085593|ref|XP_418563.2| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 803

 Score = 38.1 bits (87), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 16/92 (17%)

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTP--------------EYKVTFRSGPDHDPRF 189
           ++R L+ G      K +L  W    + VTP              +YK+  ++GP H P F
Sbjct: 109 RKRPLEDGNNGHFCKLQLI-WKKVSWSVTPKNALVQLHELKPGLQYKMVSQTGPVHAPVF 167

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V VE++GL   +G   +K+ A+  AA   LK
Sbjct: 168 AVAVEVNGLT-FEGTGPTKKKAKMRAAELALK 198


>gi|222615377|gb|EEE51509.1| hypothetical protein OsJ_32675 [Oryza sativa Japonica Group]
          Length = 830

 Score = 38.1 bits (87), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 4/61 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF--TVVVEISGLAPAQGMDCSKRAAEQVA 215
           K+ LQE+A      TPEY  TF+ GP H+P F  TVV+  +      G   +++AAEQ A
Sbjct: 35  KSRLQEYAQKAGLQTPEYH-TFKEGPSHEPVFKSTVVINNTSYDSLPGF-FNRKAAEQSA 92

Query: 216 A 216
           A
Sbjct: 93  A 93


>gi|159123457|gb|EDP48576.1| hypothetical protein AFUB_080110 [Aspergillus fumigatus A1163]
          Length = 620

 Score = 38.1 bits (87), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 30/170 (17%)

Query: 9   LEKRIGYAFANRSLLEKALTHS----SISHSYQESYERLEFLGDRILGLLISTLLF-NHF 63
           ++ R+GY F N ++L  ALT +    +   + +    RL  LG+ ++  L++ + F +  
Sbjct: 10  VQDRLGYRFKNEAILRLALTAAGKGGAEDGANKRGNSRLAHLGNFLMQFLLAWIGFGDDR 69

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A    L+ RFN   SA+ C++VA + +L   ++   D+R        S  A V+   +
Sbjct: 70  TRADTSTLATRFN---SADHCAKVAEKAELDRCLKY--DMRS------GSRSAVVLRKAV 118

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP 173
            A+       +A  FVD     + L        A T L  + H  FGV P
Sbjct: 119 NAI-------MAAIFVDSQDIHQVLM-------AVTNLGLFGHDDFGVDP 154


>gi|116006497|ref|NP_013416.2| Mrpl15p [Saccharomyces cerevisiae S288c]
 gi|3123277|sp|P36523|RM15_YEAST RecName: Full=54S ribosomal protein L15, mitochondrial; AltName:
           Full=YmL15; Flags: Precursor
 gi|2258171|gb|AAB64533.1| Mrpl15p: mitochondrial ribosomal protein YmL15 [Saccharomyces
           cerevisiae]
 gi|285813726|tpg|DAA09622.1| TPA: Mrpl15p [Saccharomyces cerevisiae S288c]
 gi|323303777|gb|EGA57561.1| Mrpl15p [Saccharomyces cerevisiae FostersB]
 gi|323307957|gb|EGA61214.1| Mrpl15p [Saccharomyces cerevisiae FostersO]
          Length = 253

 Score = 38.1 bits (87), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 14/141 (9%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH---FDSAKE 68
           + G   +N  +L+  LTH S +H  +   E+L  LG + L L        +    +S + 
Sbjct: 77  KYGINLSNELILQ-CLTHKSFAHGSKPYNEKLNLLGAQFLKLQTCIHSLKNGSPAESCEN 135

Query: 69  GELSVRFNS--------LVSAETCSQVARELDLASFI--RVSSDLRKDVCSFMTSIQADV 118
           G+LS++F++        L S  T     +  +L  FI  ++   ++    +  T+I A V
Sbjct: 136 GQLSLQFSNLGTKFAKELTSKNTACTFVKLHNLDPFIFWKMRDPIKDGHINGETTIFASV 195

Query: 119 VESLIAALYLDGGIEVAGTFV 139
           + + I A+    G E A  F+
Sbjct: 196 LNAFIGAILSTNGSEKAAKFI 216


>gi|168043507|ref|XP_001774226.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
           patens]
 gi|162674494|gb|EDQ61002.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
           patens]
          Length = 683

 Score = 38.1 bits (87), Expect = 0.93,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 35/88 (39%), Gaps = 5/88 (5%)

Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
           K W    ++   F    K +LQE A       P Y    R GPDH PRF   V  +G   
Sbjct: 50  KRWTVGVVREWAFDCMYKNQLQELAQRSCFNLPAY-ACIREGPDHAPRFKATVNFNGEVF 108

Query: 201 AQGMDCSKRAAEQVAAAEV----LKREG 224
                C+     + AAAEV    L R G
Sbjct: 109 ESPNYCNTLRQAEHAAAEVALNTLSRRG 136


>gi|27652061|gb|AAO17549.1| putative bidentate RNase III [Giardia intestinalis]
          Length = 627

 Score = 38.1 bits (87), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 5/93 (5%)

Query: 35  SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLA 94
           S+ + ++RLE LGD +LG +++  L   F  A  G L      LV  E  + + + L L 
Sbjct: 200 SHTDVFQRLELLGDAVLGFIVTARLLCLFPDASVGTLVELKMELVRNEALNYLVQTLGLP 259

Query: 95  SFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
                S++L        +   AD+ E ++ +++
Sbjct: 260 QLAEFSNNLVAK-----SKTWADMYEEIVGSIF 287


>gi|297805542|ref|XP_002870655.1| dsRNA-binding protein 5 [Arabidopsis lyrata subsp. lyrata]
 gi|297316491|gb|EFH46914.1| dsRNA-binding protein 5 [Arabidopsis lyrata subsp. lyrata]
          Length = 394

 Score = 38.1 bits (87), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           K +LQE A       P Y    R GPDH PRF   V  +G        CS     + AAA
Sbjct: 3   KNQLQELAQRSCFNLPSY-TCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAAA 61

Query: 218 EV 219
           EV
Sbjct: 62  EV 63


>gi|118405094|ref|NP_001072537.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Xenopus
           (Silurana) tropicalis]
 gi|112418622|gb|AAI22034.1| double-stranded RNA activated protein kinase 1 [Xenopus (Silurana)
           tropicalis]
 gi|168984501|emb|CAO98764.1| double-stranded RNA activated protein kinase 1 [Xenopus (Silurana)
           tropicalis]
          Length = 552

 Score = 38.1 bits (87), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 23/40 (57%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +GP HDPRFT  V ++     +G D  K+ AE +AA   L
Sbjct: 29  TGPSHDPRFTSQVFVNQEKLGEGQDKKKKGAENIAAKMAL 68


>gi|208690891|gb|ACI31221.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Ateles
           geoffroyi]
          Length = 552

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 33/70 (47%), Gaps = 4/70 (5%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA-- 215
           K EL ++   K GV   YK    SGP HD RFT  V I G    +    SK+ A   A  
Sbjct: 11  KEELNKYRQ-KQGVVLRYKELPNSGPPHDRRFTFQVIIDGREFPEAEGRSKKEATNAAAK 69

Query: 216 -AAEVLKREG 224
            A E+L RE 
Sbjct: 70  VAVEILNREN 79


>gi|302771083|ref|XP_002968960.1| hypothetical protein SELMODRAFT_90770 [Selaginella moellendorffii]
 gi|300163465|gb|EFJ30076.1| hypothetical protein SELMODRAFT_90770 [Selaginella moellendorffii]
          Length = 128

 Score = 38.1 bits (87), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 62/137 (45%), Gaps = 24/137 (17%)

Query: 15  YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF-----DSAKEG 69
           Y F + +LL+ ALTHSS S   + +   L  LG  I    I   ++ H+     D+ KE 
Sbjct: 2   YKFNDSTLLQDALTHSSYS---RHNNGPLHLLGVSI----IRASVYKHYLAKNRDATKE- 53

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSS--DLRKDVCSFMTSIQADVVESLIAALY 127
           EL    +SL S   C++ A  L L   IR  +  D + D       + A    +L  A+ 
Sbjct: 54  ELEAMSSSLSSTTACARRASGLGLDKLIRADAPVDRKSD------KVLAVAFHALFGAIA 107

Query: 128 LDGGIEVAGTFVDKYWK 144
           +DG  + A +    +WK
Sbjct: 108 MDGSADQAMSV---FWK 121


>gi|224121666|ref|XP_002318642.1| predicted protein [Populus trichocarpa]
 gi|222859315|gb|EEE96862.1| predicted protein [Populus trichocarpa]
          Length = 179

 Score = 37.7 bits (86), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 3/48 (6%)

Query: 9  LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIS 56
          L+ +IGY F N   L +A+THSS S   QE+ + L  LG  ++   +S
Sbjct: 40 LQNQIGYTFKNIGYLRRAMTHSSFS---QENNKALSILGSNVIDTSVS 84


>gi|222641889|gb|EEE70021.1| hypothetical protein OsJ_29958 [Oryza sativa Japonica Group]
          Length = 325

 Score = 37.7 bits (86), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           K  LQE AH      P Y  T RSGP H P F+  VE++G++ A     +K+ AE+ AA
Sbjct: 89  KNLLQETAHRAGLKLPVY-TTVRSGPGHSPVFSSTVELAGMSFAGDPAKTKKHAEKNAA 146



 Score = 37.4 bits (85), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK-RAAEQVAA 216
           K +LQE A       P Y V  R GPDH PRF   V  +G       +C+  R AE  AA
Sbjct: 3   KNQLQELAQRSCFSLPSY-VCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAAA 61

Query: 217 AEVLKR 222
              L R
Sbjct: 62  EVALAR 67


>gi|307110681|gb|EFN58917.1| hypothetical protein CHLNCDRAFT_140869 [Chlorella variabilis]
          Length = 171

 Score = 37.7 bits (86), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 8  TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE+R+ Y F N   L+ AL H S     + +  RL +LGD +LG  +S LL+     A
Sbjct: 22 ALEQRLNYNFNNTWGLKLALVHPSYG---ELNNARLTWLGDAVLGAAVSDLLYQALPDA 77


>gi|294143002|ref|YP_003558980.1| hypothetical protein SVI_4231 [Shewanella violacea DSS12]
 gi|293329471|dbj|BAJ04202.1| conserved hypothetical protein [Shewanella violacea DSS12]
          Length = 289

 Score = 37.7 bits (86), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 18/116 (15%)

Query: 22  LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
           LL    T  ++ H  +   +  +F+G+RIL   +ST             +S +FN +   
Sbjct: 111 LLPLPYTQEAVEHLSRRIIQVQDFMGERILLENVSTY------------VSCQFNEMTEG 158

Query: 82  ETCSQVARE------LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131
           E  + VAR+      LD+ +    S +L +D+ +FM  I  + V+ +  A + D G
Sbjct: 159 EFIAAVARQADCYLLLDINNAFVTSKNLNQDMQAFMDVIPVERVKQIHLAGFQDKG 214


>gi|115525231|ref|YP_782142.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris
           BisA53]
 gi|115519178|gb|ABJ07162.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris
           BisA53]
          Length = 554

 Score = 37.7 bits (86), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 7/63 (11%)

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEW----AHA---KFGVTPEYKVTF 179
           YL+ G+E++   V++   +R    G  R+ +  EL EW    AHA    FGV P ++V  
Sbjct: 48  YLNVGVELSDRVVERGLGERIALVGNGRKRSYRELSEWTNQLAHALVEDFGVRPGHRVLV 107

Query: 180 RSG 182
           RSG
Sbjct: 108 RSG 110


>gi|145486836|ref|XP_001429424.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|74830341|emb|CAI39051.1| Ribonuclease with two RNaseIII domains [Paramecium tetraurelia]
 gi|124396516|emb|CAK62026.1| unnamed protein product [Paramecium tetraurelia]
          Length = 725

 Score = 37.7 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 19/126 (15%)

Query: 17  FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
            AN   +E+A+  S  S + Q +Y+ LE LGD ++  L S +LF       E  LS    
Sbjct: 341 LANLDRVEEAI--SCPSFNSQRNYQNLEMLGDVVIKYLTSAMLFEDSKYKTENTLSSARV 398

Query: 77  SLVSAETCSQVARELDLASF-IRVSSDLRKDVCSFMTSI-------------QADVVESL 122
            L++ +  S +   L L +   +++S   K + + M  I             QAD+ E+L
Sbjct: 399 RLITNKHLSSIYGNLKLNAMNFKINS---KKLLNHMMMIINEHEDSKLSQKQQADIYEAL 455

Query: 123 IAALYL 128
             A Y+
Sbjct: 456 CGACYI 461


>gi|215764986|dbj|BAG86683.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 357

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           K  LQE AH      P Y  T RSGP H P F+  VE++G++ A     +K+ AE+ AA
Sbjct: 89  KNLLQETAHRAGLKLPVY-TTVRSGPGHSPVFSSTVELAGMSFAGDPAKTKKHAEKNAA 146



 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK-RAAEQVAA 216
           K +LQE A       P Y V  R GPDH PRF   V  +G       +C+  R AE  AA
Sbjct: 3   KNQLQELAQRSCFSLPSY-VCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAAA 61

Query: 217 AEVLKR 222
              L R
Sbjct: 62  EVALAR 67


>gi|62912408|gb|AAY21792.1| dsRNA binding protein RBP [Oryza sativa Japonica Group]
          Length = 410

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 4/61 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF--TVVVEISGLAPAQGMDCSKRAAEQVA 215
           K+ LQE+A      TPEY  TF+ GP H+P F  TVV+  +      G   +++AAEQ A
Sbjct: 35  KSRLQEYAQKTGLQTPEYH-TFKEGPSHEPVFKSTVVINNTSYDSLPGF-FNRKAAEQSA 92

Query: 216 A 216
           A
Sbjct: 93  A 93


>gi|302819689|ref|XP_002991514.1| hypothetical protein SELMODRAFT_429802 [Selaginella moellendorffii]
 gi|300140716|gb|EFJ07436.1| hypothetical protein SELMODRAFT_429802 [Selaginella moellendorffii]
          Length = 569

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 24/39 (61%)

Query: 39  SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
           SYE LE LGD  L  +++  LF  +D   EG+LS R N+
Sbjct: 323 SYESLELLGDSFLKYVVTQKLFLVYDKKHEGQLSARRNT 361


>gi|115486946|ref|NP_001065960.1| Os12g0109900 [Oryza sativa Japonica Group]
 gi|122234185|sp|Q0IQN6|DRB8_ORYSJ RecName: Full=Double-stranded RNA-binding protein 8; AltName:
           Full=dsRNA-binding protein 1; Short=OsDRB1; AltName:
           Full=dsRNA-binding protein 8
 gi|108862090|gb|ABG21849.1| Double-stranded RNA binding motif family protein, expressed [Oryza
           sativa Japonica Group]
 gi|113648467|dbj|BAF28979.1| Os12g0109900 [Oryza sativa Japonica Group]
          Length = 424

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 4/61 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF--TVVVEISGLAPAQGMDCSKRAAEQVA 215
           K+ LQE+A      TPEY  TF+ GP H+P F  TVV+  +      G   +++AAEQ A
Sbjct: 35  KSRLQEYAQKTGLQTPEYH-TFKEGPSHEPVFKSTVVINNTSYDSLPGF-FNRKAAEQSA 92

Query: 216 A 216
           A
Sbjct: 93  A 93


>gi|125564316|gb|EAZ09696.1| hypothetical protein OsI_31979 [Oryza sativa Indica Group]
          Length = 357

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           K  LQE AH      P Y  T RSGP H P F+  VE++G++ A     +K+ AE+ AA
Sbjct: 89  KNLLQETAHRAGLKLPVY-TTVRSGPGHSPVFSSTVELAGMSFAGDPAKTKKHAEKNAA 146



 Score = 37.0 bits (84), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK-RAAEQVAA 216
           K +LQE A       P Y V  R GPDH PRF   V  +G       +C+  R AE  AA
Sbjct: 3   KNQLQELAQRSCFSLPSY-VCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAAA 61

Query: 217 AEVLKR 222
              L R
Sbjct: 62  EVALAR 67


>gi|302819687|ref|XP_002991513.1| hypothetical protein SELMODRAFT_429800 [Selaginella moellendorffii]
 gi|300140715|gb|EFJ07435.1| hypothetical protein SELMODRAFT_429800 [Selaginella moellendorffii]
          Length = 850

 Score = 37.4 bits (85), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 24/39 (61%)

Query: 39  SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
           SYE LE LGD  L  +++  LF  +D   EG+LS R N+
Sbjct: 585 SYESLELLGDSFLKYVVTQKLFLVYDKKHEGQLSARRNT 623


>gi|281414105|ref|ZP_06245847.1| RNAse III [Micrococcus luteus NCTC 2665]
          Length = 130

 Score = 37.4 bits (85), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 3/107 (2%)

Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFG 170
           SI AD +E+LI A+Y+D G   A   V ++      +    R   D KT + E A ++ G
Sbjct: 10  SILADTLEALIGAVYVDHGAVAAAALVHRHVVPLLDEPDLLRESTDWKTVVAE-AASRHG 68

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           +          GP HDPR+   + +        +  SK+ AE+ AAA
Sbjct: 69  LGAVRYAIEGQGPAHDPRYRATLVVGEREYGSAVASSKKQAERDAAA 115


>gi|149048041|gb|EDM00617.1| adenosine deaminase, RNA-specific, isoform CRA_b [Rattus
           norvegicus]
          Length = 1175

 Score = 37.4 bits (85), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E  H K G + E+++  + GP HDP+F   V +           SK+ A+Q+AA E
Sbjct: 567 TTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 625

Query: 219 VLK 221
            +K
Sbjct: 626 AMK 628


>gi|71834292|ref|NP_001025236.1| interleukin enhancer binding factor 3a [Danio rerio]
 gi|66911683|gb|AAH96956.1| Zgc:113842 [Danio rerio]
          Length = 820

 Score = 37.4 bits (85), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 3/72 (4%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
           R++    L +    + G    YK+  ++GP+H+P+F++ VE+ G+   +    SKR+A+ 
Sbjct: 456 RKEPPNALMKLNQLRPGTV--YKLASQTGPEHEPQFSMTVEVDGVT-YEATGPSKRSAKL 512

Query: 214 VAAAEVLKREGI 225
             A +VL   G+
Sbjct: 513 HVAQKVLVALGV 524


>gi|74140777|dbj|BAC40888.2| unnamed protein product [Mus musculus]
          Length = 1173

 Score = 37.4 bits (85), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E  H K G + E+++  + GP HDP+F   V +           SK+ A+Q+AA E
Sbjct: 570 TTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQMAAEE 628

Query: 219 VLK 221
            +K
Sbjct: 629 AMK 631


>gi|13591904|ref|NP_112268.1| double-stranded RNA-specific adenosine deaminase [Rattus
           norvegicus]
 gi|1706533|sp|P55266|DSRAD_RAT RecName: Full=Double-stranded RNA-specific adenosine deaminase;
           Short=DRADA
 gi|755817|gb|AAA65039.1| double-stranded RNA-specific adenosine deaminase [Rattus
           norvegicus]
          Length = 1175

 Score = 37.4 bits (85), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E  H K G + E+++  + GP HDP+F   V +           SK+ A+Q+AA E
Sbjct: 567 TTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 625

Query: 219 VLK 221
            +K
Sbjct: 626 AMK 628


>gi|195641916|gb|ACG40426.1| double-stranded RNA binding motif family protein [Zea mays]
 gi|195644492|gb|ACG41714.1| double-stranded RNA binding motif family protein [Zea mays]
          Length = 352

 Score = 37.4 bits (85), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           K  LQE AH      P Y  T RSGP H P F+  VE++GL+ A     +K+ AE+ AA
Sbjct: 89  KNLLQETAHRAGLKLPAY-TTVRSGPGHSPVFSSTVELAGLSFAGDPARTKKQAEKNAA 146


>gi|9229939|dbj|BAB00641.1| dsRNA-binding protein ODB1 [Oryza sativa Japonica Group]
          Length = 425

 Score = 37.4 bits (85), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 4/61 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF--TVVVEISGLAPAQGMDCSKRAAEQVA 215
           K+ LQE+A      TPEY  TF+ GP H+P F  TVV+  +      G   +++AAEQ A
Sbjct: 35  KSRLQEYAQKTGLQTPEYH-TFKEGPSHEPVFKSTVVINNTSYDSLPGF-FNRKAAEQSA 92

Query: 216 A 216
           A
Sbjct: 93  A 93


>gi|27768964|gb|AAH42505.1| Adenosine deaminase, RNA-specific [Mus musculus]
          Length = 1152

 Score = 37.4 bits (85), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E  H K G + E+++  + GP HDP+F   V +           SK+ A+Q+AA E
Sbjct: 570 TTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQMAAEE 628

Query: 219 VLK 221
            +K
Sbjct: 629 AMK 631


>gi|71059975|emb|CAJ18531.1| Adar [Mus musculus]
          Length = 1152

 Score = 37.4 bits (85), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E  H K G + E+++  + GP HDP+F   V +           SK+ A+Q+AA E
Sbjct: 570 TTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQMAAEE 628

Query: 219 VLK 221
            +K
Sbjct: 629 AMK 631


>gi|13236214|gb|AAK16102.1|AF291876_1 RNA adenosine deaminase 1 [Mus musculus]
          Length = 1178

 Score = 37.4 bits (85), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E  H K G + E+++  + GP HDP+F   V +           SK+ A+Q+AA E
Sbjct: 570 TTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQMAAEE 628

Query: 219 VLK 221
            +K
Sbjct: 629 AMK 631


>gi|226371677|ref|NP_001139768.1| double-stranded RNA-specific adenosine deaminase isoform 3 [Mus
           musculus]
 gi|38372251|sp|Q99MU3|DSRAD_MOUSE RecName: Full=Double-stranded RNA-specific adenosine deaminase;
           Short=DRADA; AltName: Full=RNA adenosine deaminase 1
 gi|148683239|gb|EDL15186.1| adenosine deaminase, RNA-specific, isoform CRA_b [Mus musculus]
          Length = 1178

 Score = 37.4 bits (85), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E  H K G + E+++  + GP HDP+F   V +           SK+ A+Q+AA E
Sbjct: 570 TTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQMAAEE 628

Query: 219 VLK 221
            +K
Sbjct: 629 AMK 631


>gi|13272339|gb|AAK17103.1|AF291050_1 RNA adenosine deaminase 1 [Mus musculus]
          Length = 1152

 Score = 37.4 bits (85), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E  H K G + E+++  + GP HDP+F   V +           SK+ A+Q+AA E
Sbjct: 570 TTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQMAAEE 628

Query: 219 VLK 221
            +K
Sbjct: 629 AMK 631


>gi|226371679|ref|NP_062629.3| double-stranded RNA-specific adenosine deaminase isoform 1 [Mus
           musculus]
 gi|148683238|gb|EDL15185.1| adenosine deaminase, RNA-specific, isoform CRA_a [Mus musculus]
          Length = 1152

 Score = 37.4 bits (85), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E  H K G + E+++  + GP HDP+F   V +           SK+ A+Q+AA E
Sbjct: 570 TTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQMAAEE 628

Query: 219 VLK 221
            +K
Sbjct: 629 AMK 631


>gi|302816661|ref|XP_002990009.1| hypothetical protein SELMODRAFT_130786 [Selaginella moellendorffii]
 gi|300142320|gb|EFJ09022.1| hypothetical protein SELMODRAFT_130786 [Selaginella moellendorffii]
          Length = 127

 Score = 37.4 bits (85), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 63/140 (45%), Gaps = 24/140 (17%)

Query: 15  YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF-----DSAKEG 69
           Y F + +LL+ ALTHSS S   + +   L  LG  I    I   ++ H+     D+ KE 
Sbjct: 1   YKFNDSTLLQDALTHSSYS---RHNNGPLHLLGVSI----IRASVYKHYLAKNRDATKE- 52

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIR--VSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EL    +SL S   C++ A  L L   IR  V  D + D       + A     L  A+ 
Sbjct: 53  ELEAMSSSLSSTTACARRASGLGLDKLIRADVPVDRKSD------KVLAVAFHVLFGAIA 106

Query: 128 LDGGIEVAGTFVDKYWKQRA 147
           +DG  + A +    +WK ++
Sbjct: 107 MDGSADQAMSV---FWKIKS 123


>gi|2981097|gb|AAC06233.1| double-stranded RNA-specific adenosine deaminase [Mus musculus]
          Length = 1152

 Score = 37.4 bits (85), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E  H K G + E+++  + GP HDP+F   V +           SK+ A+Q+AA E
Sbjct: 570 TTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQMAAEE 628

Query: 219 VLK 221
            +K
Sbjct: 629 AMK 631


>gi|297818244|ref|XP_002877005.1| dsRNA-binding protein 3 [Arabidopsis lyrata subsp. lyrata]
 gi|297322843|gb|EFH53264.1| dsRNA-binding protein 3 [Arabidopsis lyrata subsp. lyrata]
          Length = 356

 Score = 37.4 bits (85), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           K +LQE A       P Y  T R GPDH PRF   V  +G        CS     + +AA
Sbjct: 3   KNQLQELAQRSCFNLPSYTCT-REGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSAA 61

Query: 218 EV 219
           EV
Sbjct: 62  EV 63


>gi|169607859|ref|XP_001797349.1| hypothetical protein SNOG_06991 [Phaeosphaeria nodorum SN15]
 gi|111064522|gb|EAT85642.1| hypothetical protein SNOG_06991 [Phaeosphaeria nodorum SN15]
          Length = 843

 Score = 37.4 bits (85), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 59/131 (45%), Gaps = 15/131 (11%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHS-YQES--YE-----RLEFLGDRILGLLISTLLF 60
           LE R+GY F NR    +AL  +   HS Y +   YE     RL  LGDR+L L +  + F
Sbjct: 105 LEVRLGYTFQNRMTGIEALKVTGNVHSLYYDGAVYETGMNNRLALLGDRVLSLALCEIWF 164

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
              D    G       +L+S++T S+ A  +         S L  D         A+  E
Sbjct: 165 -QTDHPNGG------YALMSSQTVSRAALAVTGHKLGLHLSILTGDGKGVTRDNIAETFE 217

Query: 121 SLIAALYLDGG 131
           +++ A+Y+D G
Sbjct: 218 AIMGAVYVDSG 228


>gi|108802827|gb|ABG21364.1| eukaryotic translation initiation factor 2 alpha kinase 2
           [Mesocricetus auratus]
          Length = 473

 Score = 37.4 bits (85), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 26/51 (50%)

Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           H K  VT  YK  F +GP HD RFT  V I G    +    +K+ A+  AA
Sbjct: 17  HQKHRVTITYKHLFTTGPPHDRRFTFQVIIDGEEFPEAEGKTKQEAKNAAA 67


>gi|79420704|ref|NP_189329.3| DRB3 (dsRNA-binding protein 3); RNA binding / double-stranded RNA
           binding [Arabidopsis thaliana]
 gi|145322916|ref|NP_001030779.2| DRB3 (dsRNA-binding protein 3); RNA binding / double-stranded RNA
           binding [Arabidopsis thaliana]
 gi|75273549|sp|Q9LJF5|DRB3_ARATH RecName: Full=Double-stranded RNA-binding protein 3; AltName:
           Full=dsRNA-binding protein 3; Short=AtDRB3
 gi|11994159|dbj|BAB01188.1| unnamed protein product [Arabidopsis thaliana]
 gi|45773934|gb|AAS76771.1| At3g26932 [Arabidopsis thaliana]
 gi|62321583|dbj|BAD95129.1| putative protein [Arabidopsis thaliana]
 gi|332643724|gb|AEE77245.1| dsRNA-binding protein 3 [Arabidopsis thaliana]
 gi|332643725|gb|AEE77246.1| dsRNA-binding protein 3 [Arabidopsis thaliana]
          Length = 359

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           K +LQE A       P Y  T R GPDH PRF   V  +G        CS     + +AA
Sbjct: 3   KNQLQELAQRSCFSLPSYTCT-REGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSAA 61

Query: 218 EV 219
           EV
Sbjct: 62  EV 63


>gi|226502082|ref|NP_001146877.1| RNA binding protein [Zea mays]
 gi|195604576|gb|ACG24118.1| RNA binding protein [Zea mays]
          Length = 179

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 15/28 (53%), Positives = 21/28 (75%)

Query: 7  STLEKRIGYAFANRSLLEKALTHSSISH 34
          + L+ R+GYAF   +LL +A+THSS SH
Sbjct: 38 AALQSRVGYAFRAPALLRRAMTHSSYSH 65


>gi|102139807|gb|ABF69992.1| double-stranded RNA-binding (DsRBD) domain-containing protein [Musa
           acuminata]
          Length = 610

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           K +LQE A       P Y  + R GPDH PRF   V  +G A      CS     + +AA
Sbjct: 3   KNQLQELAQRSCFNLPSY-ASIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHSAA 61

Query: 218 EV 219
           EV
Sbjct: 62  EV 63



 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           K  LQE AH      P Y  T RSGP H P FT  VE++G++       +K+ A++ AA
Sbjct: 89  KNLLQETAHRAGLKLPVY-TTVRSGPGHTPIFTCTVELAGMSFTGDPAKTKKQAQKNAA 146


>gi|39942154|ref|XP_360614.1| hypothetical protein MGG_03157 [Magnaporthe oryzae 70-15]
 gi|145015863|gb|EDK00353.1| hypothetical protein MGG_03157 [Magnaporthe oryzae 70-15]
          Length = 402

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 13/141 (9%)

Query: 19  NRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
           + S+ + A THSS+     S  +SY+RLE+LGD  L L  +  ++  F +   G  S   
Sbjct: 125 DPSIEKAAFTHSSVIGNKLSGVQSYDRLEWLGDAYLELFATCFIYQTFPALSHGASSQLR 184

Query: 76  NSLVSAETCSQVARELDLASFIRVSSD---LRKDVCSFM----TSIQADVVESLIAALYL 128
             L+  ++ +Q  +   L    R+  +   L     + M    T I  D+ E+ + A+  
Sbjct: 185 EVLIRNDSLAQWTQAYGLEKRARLPPEFAGLNHSGQAMMQKKRTKIYGDLFEAYVGAIIA 244

Query: 129 DG---GIEVAGTFVDKYWKQR 146
                G + A  ++   W  R
Sbjct: 245 SDPVHGTDRAAVWLKSLWAPR 265


>gi|302693867|ref|XP_003036612.1| hypothetical protein SCHCODRAFT_30567 [Schizophyllum commune H4-8]
 gi|300110309|gb|EFJ01710.1| hypothetical protein SCHCODRAFT_30567 [Schizophyllum commune H4-8]
          Length = 216

 Score = 37.4 bits (85), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 54/107 (50%), Gaps = 7/107 (6%)

Query: 41  ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL-VSAETCSQVARELDLASFIRV 99
           E+ E LGD +LGL+++T +   +   + G  S +  +L V  +  + ++ +  L   ++V
Sbjct: 43  EKFEHLGDTVLGLVVTTQIQQMYPGLRVGP-STKIRALVVGNQNLAAISVKYKLPERLKV 101

Query: 100 SSDLRKDVCSFMTS--IQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
            +     V S   S  +QAD+ E+ +  L+L  G+ V   ++   ++
Sbjct: 102 HA---AQVVSLKASVNVQADLFEAYVGGLFLHRGLSVVEAWLKPLFR 145


>gi|169146118|emb|CAQ15450.1| novel protein similar to H.sapiens PRKRA, protein kinase,
           interferon-inducible double stranded RNA dependent
           activator (PRKRA, zgc:162619) [Danio rerio]
          Length = 300

 Score = 37.4 bits (85), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           LQE A  +    PEY V   +GP H   FT+   + GL    G   SK+ A + AA  ++
Sbjct: 122 LQELAMQRVWCLPEYVVFMETGPGHMKEFTIACRLEGLE-ETGSGSSKKLARRAAAENMI 180

Query: 221 KR 222
            +
Sbjct: 181 AK 182


>gi|302782383|ref|XP_002972965.1| hypothetical protein SELMODRAFT_441949 [Selaginella moellendorffii]
 gi|302823467|ref|XP_002993386.1| hypothetical protein SELMODRAFT_431451 [Selaginella moellendorffii]
 gi|300138817|gb|EFJ05571.1| hypothetical protein SELMODRAFT_431451 [Selaginella moellendorffii]
 gi|300159566|gb|EFJ26186.1| hypothetical protein SELMODRAFT_441949 [Selaginella moellendorffii]
          Length = 386

 Score = 37.0 bits (84), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           K  LQE A       P Y  T RSGP H P FT VVE++G+        +K+ AE+ AA
Sbjct: 89  KNLLQETAQRANVPLPTYTTT-RSGPGHLPVFTCVVEVAGMNFTGDAGKTKKQAEKNAA 146


>gi|125551761|gb|EAY97470.1| hypothetical protein OsI_19399 [Oryza sativa Indica Group]
          Length = 787

 Score = 37.0 bits (84), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 4/61 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF--TVVVEISGLAPAQGMDCSKRAAEQVA 215
           K+ LQE+A      TPEY  T + GP H+P F  TVV+  +      G   +++AAEQ A
Sbjct: 37  KSRLQEYAQKAGLQTPEYH-TSKEGPSHEPVFKSTVVINNTSYGSLPGFS-NRKAAEQSA 94

Query: 216 A 216
           A
Sbjct: 95  A 95


>gi|328951087|ref|YP_004368422.1| double-stranded RNA binding domain protein [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451411|gb|AEB12312.1| double-stranded RNA binding domain protein [Marinithermus
           hydrothermalis DSM 14884]
          Length = 158

 Score = 37.0 bits (84), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           K+ L  +   K    PE+  T  +GP+HDP F   V ++G   A G   +KR AE++AA
Sbjct: 5   KSALIAYCRTKGLAGPEFD-TRGTGPEHDPLFISDVMVNGTVVATGQGRTKREAERIAA 62


>gi|222631053|gb|EEE63185.1| hypothetical protein OsJ_17994 [Oryza sativa Japonica Group]
          Length = 787

 Score = 37.0 bits (84), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 4/61 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF--TVVVEISGLAPAQGMDCSKRAAEQVA 215
           K+ LQE+A      TPEY  T + GP H+P F  TVV+  +      G   +++AAEQ A
Sbjct: 37  KSRLQEYAQKAGLQTPEYH-TSKEGPSHEPVFKSTVVINNTSYGSLPGFS-NRKAAEQSA 94

Query: 216 A 216
           A
Sbjct: 95  A 95


>gi|296229001|ref|XP_002760089.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
           1 [Callithrix jacchus]
          Length = 1226

 Score = 37.0 bits (84), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E  H K G + E+++  + GP H+P+F   V++           SK+ A+Q+AA E
Sbjct: 617 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFEYCVQVGAQTFPSVSAPSKKVAKQMAAEE 675

Query: 219 VLK 221
            +K
Sbjct: 676 AMK 678


>gi|296229005|ref|XP_002760091.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
           3 [Callithrix jacchus]
          Length = 1181

 Score = 37.0 bits (84), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E  H K G + E+++  + GP H+P+F   V++           SK+ A+Q+AA E
Sbjct: 617 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFEYCVQVGAQTFPSVSAPSKKVAKQMAAEE 675

Query: 219 VLK 221
            +K
Sbjct: 676 AMK 678


>gi|115483791|ref|NP_001065557.1| Os11g0109900 [Oryza sativa Japonica Group]
 gi|122221791|sp|Q0IV63|DRB7_ORYSJ RecName: Full=Double-stranded RNA-binding protein 7; AltName:
           Full=dsRNA-binding protein 7
 gi|108863922|gb|ABG22335.1| Double-stranded RNA binding motif family protein, expressed [Oryza
           sativa Japonica Group]
 gi|113644261|dbj|BAF27402.1| Os11g0109900 [Oryza sativa Japonica Group]
 gi|215686684|dbj|BAG88937.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215768461|dbj|BAH00690.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 473

 Score = 37.0 bits (84), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 4/61 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF--TVVVEISGLAPAQGMDCSKRAAEQVA 215
           K+ LQE+A      TPEY  TF+ GP H+P F  TVV+  +      G   +++AAEQ A
Sbjct: 35  KSRLQEYAQKAGLQTPEYH-TFKEGPSHEPVFKSTVVINNTSYDSLPGF-FNRKAAEQSA 92

Query: 216 A 216
           A
Sbjct: 93  A 93


>gi|251764897|sp|B0V3F8|PRKRA_DANRE RecName: Full=Interferon-inducible double stranded RNA-dependent
           protein kinase activator A homolog
 gi|169146119|emb|CAQ15451.1| novel protein similar to H.sapiens PRKRA, protein kinase,
           interferon-inducible double stranded RNA dependent
           activator (PRKRA, zgc:162619) [Danio rerio]
          Length = 282

 Score = 37.0 bits (84), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           LQE A  +    PEY V   +GP H   FT+   + GL    G   SK+ A + AA  ++
Sbjct: 104 LQELAMQRVWCLPEYVVFMETGPGHMKEFTIACRLEGLE-ETGSGSSKKLARRAAAENMI 162

Query: 221 KR 222
            +
Sbjct: 163 AK 164


>gi|326495676|dbj|BAJ85934.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 364

 Score = 37.0 bits (84), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           K  LQE AH      P Y  T RSGP H P F   VE++GL+ A     +K+ AE+ AA
Sbjct: 89  KNLLQETAHRAGLKLPAY-TTVRSGPGHSPVFASSVELAGLSFAGDAARTKKQAEKNAA 146



 Score = 36.2 bits (82), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 29/67 (43%), Gaps = 4/67 (5%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK--RAAEQVA 215
           K +LQE A       P Y V  R GPDH PRF   V  +G     G  C    R AE  A
Sbjct: 3   KNQLQELAQRSCFSLPSY-VCTREGPDHAPRFKATVTFNGET-FHGPTCCTTLRQAEHAA 60

Query: 216 AAEVLKR 222
           A   L R
Sbjct: 61  AEVALAR 67


>gi|148235737|ref|NP_001082830.1| interferon-inducible double stranded RNA-dependent protein kinase
           activator A [Danio rerio]
 gi|134025033|gb|AAI35035.1| Zgc:162619 protein [Danio rerio]
          Length = 282

 Score = 37.0 bits (84), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           LQE A  +    PEY V   +GP H   FT+   + GL    G   SK+ A + AA  ++
Sbjct: 104 LQELAMQRVWCLPEYVVFMETGPGHMKEFTIACRLEGLE-ETGSGSSKKLARRAAAENMI 162

Query: 221 KR 222
            +
Sbjct: 163 AK 164


>gi|296229003|ref|XP_002760090.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
           2 [Callithrix jacchus]
          Length = 1200

 Score = 37.0 bits (84), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E  H K G + E+++  + GP H+P+F   V++           SK+ A+Q+AA E
Sbjct: 617 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFEYCVQVGAQTFPSVSAPSKKVAKQMAAEE 675

Query: 219 VLK 221
            +K
Sbjct: 676 AMK 678


>gi|222630219|gb|EEE62351.1| hypothetical protein OsJ_17140 [Oryza sativa Japonica Group]
          Length = 606

 Score = 37.0 bits (84), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           K  LQE AH      P Y  T RSGP H P FT  VE++G+        +K+ A++ AA
Sbjct: 102 KNLLQETAHRAGLKLPVY-TTIRSGPGHTPVFTCTVELAGMTFTGNPGKTKKQAQKNAA 159



 Score = 34.7 bits (78), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG---LAPA--QGMDCSKRAAE 212
           K +LQE A       P Y    R GPDH PRF   V  +G    +PA    +  ++ AA 
Sbjct: 16  KNQLQELAQRSCFNLPSY-ACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAAA 74

Query: 213 QVAAAEVLKR 222
           +VA  E+ KR
Sbjct: 75  EVALNELSKR 84


>gi|225451531|ref|XP_002275052.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296082307|emb|CBI21312.3| unnamed protein product [Vitis vinifera]
          Length = 481

 Score = 37.0 bits (84), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 4/68 (5%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ---V 214
           K  LQE AH + G+      T RSGP H P FT  VE++G+        +K+ AE+   +
Sbjct: 89  KNLLQETAH-RAGLNLPVYTTVRSGPGHVPVFTCTVELAGMNFTGESAKTKKQAEKNAAI 147

Query: 215 AAAEVLKR 222
           AA   LKR
Sbjct: 148 AAWSALKR 155


>gi|321476628|gb|EFX87588.1| hypothetical protein DAPPUDRAFT_221551 [Daphnia pulex]
          Length = 200

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L EW   +    P+Y+V   SGP H   + +  ++ G    +G   SK+AA+ VAA ++L
Sbjct: 134 LTEWCLTRLSNLPDYRVVRTSGPSHSKTYFMTCKL-GDRVTEGEGKSKKAAKNVAAGKML 192

Query: 221 K 221
           +
Sbjct: 193 Q 193


>gi|156844538|ref|XP_001645331.1| hypothetical protein Kpol_1058p10 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156115992|gb|EDO17473.1| hypothetical protein Kpol_1058p10 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 1066

 Score = 37.0 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 17/141 (12%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLE-KALTHSSISHSYQES--YERLEFLGDRILGLLIST 57
           +S+  +  +EKRIG   A +   E K L  SS+  S  E+  Y+++  L   IL  +I+ 
Sbjct: 616 ISSNSFCIVEKRIGKIMAIKGKWELKYLDESSLIASKLETITYQKIMNLQRSILHKIINH 675

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
           ++ +  +  K           +S   CSQ A E  L  +I    D    + SF TS+ A 
Sbjct: 676 MIIDSLNQLK-----------ISNRVCSQEAIEKALPDYIISDLDSENSLDSFRTSLPA- 723

Query: 118 VVESLIAALYLDGGIEVAGTF 138
              S I AL L+  + ++ T 
Sbjct: 724 --YSSIIALELNSLLNISNTL 742


>gi|115462131|ref|NP_001054665.1| Os05g0150400 [Oryza sativa Japonica Group]
 gi|122169532|sp|Q0DKP4|DRB2_ORYSJ RecName: Full=Double-stranded RNA-binding protein 2; AltName:
           Full=dsRNA-binding protein 2; AltName:
           Full=dsRNA-binding protein 3; Short=OsDRB3
 gi|113578216|dbj|BAF16579.1| Os05g0150400 [Oryza sativa Japonica Group]
          Length = 593

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           K  LQE AH      P Y  T RSGP H P FT  VE++G+        +K+ A++ AA
Sbjct: 89  KNLLQETAHRAGLKLPVY-TTIRSGPGHTPVFTCTVELAGMTFTGNPGKTKKQAQKNAA 146


>gi|26337823|dbj|BAC32597.1| unnamed protein product [Mus musculus]
          Length = 701

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 16/92 (17%)

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTP--------------EYKVTFRSGPDHDPRF 189
           ++R L+ G      K +L  W    + VTP              +Y++  ++GP H P F
Sbjct: 98  RKRPLEEGNGGHFCKLQLI-WKKLSWSVTPKNALVQLHELKPGLQYRMVSQTGPVHAPVF 156

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V VE++GL   +G   +K+ A+  AA   LK
Sbjct: 157 AVAVEVNGLT-FEGTGPTKKKAKMRAAEMALK 187


>gi|40788412|dbj|BAD07039.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 397

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
           K  LQE AH      P Y  T RSGP H P F+  VE++G++ A     +K+ AE+
Sbjct: 112 KNLLQETAHRAGLKLPVY-TTVRSGPGHSPVFSSTVELAGMSFAGDPAKTKKHAEK 166


>gi|37590574|gb|AAH59822.1| Adarb2 protein [Mus musculus]
          Length = 701

 Score = 37.0 bits (84), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 16/92 (17%)

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTP--------------EYKVTFRSGPDHDPRF 189
           ++R L+ G      K +L  W    + VTP              +Y++  ++GP H P F
Sbjct: 98  RKRPLEEGNGGHFCKLQLI-WKKLSWSVTPKNALVQLHELKPGLQYRMVSQTGPVHAPVF 156

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V VE++GL   +G   +K+ A+  AA   LK
Sbjct: 157 AVAVEVNGLT-FEGTGPTKKKAKMRAAEMALK 187


>gi|119573569|gb|EAW53184.1| adenosine deaminase, RNA-specific, isoform CRA_b [Homo sapiens]
 gi|119573574|gb|EAW53189.1| adenosine deaminase, RNA-specific, isoform CRA_b [Homo sapiens]
          Length = 886

 Score = 36.6 bits (83), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+AA E
Sbjct: 322 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 380

Query: 219 VLK 221
            +K
Sbjct: 381 AMK 383


>gi|8571466|gb|AAF76894.1|AF270495_1 RNA dependent adenosine deaminase 3 [Mus musculus]
          Length = 745

 Score = 36.6 bits (83), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 16/92 (17%)

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTP--------------EYKVTFRSGPDHDPRF 189
           ++R L+ G      K +L  W    + VTP              +Y++  ++GP H P F
Sbjct: 98  RKRPLEEGNGGHFCKLQLI-WKKLSWSVTPKNALVQLHELKPGLQYRMVSQTGPVHAPVF 156

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V VE++GL   +G   +K+ A+  AA   LK
Sbjct: 157 AVAVEVNGLT-FEGTGPTKKKAKMRAAEMALK 187


>gi|119573573|gb|EAW53188.1| adenosine deaminase, RNA-specific, isoform CRA_e [Homo sapiens]
          Length = 905

 Score = 36.6 bits (83), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+AA E
Sbjct: 322 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 380

Query: 219 VLK 221
            +K
Sbjct: 381 AMK 383


>gi|168048373|ref|XP_001776641.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
           patens]
 gi|162671933|gb|EDQ58477.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
           patens]
          Length = 1053

 Score = 36.6 bits (83), Expect = 2.4,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 1/74 (1%)

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
           W+++ ++        K  LQE A  + GV+     T RSGP H P FT  VE++ +  + 
Sbjct: 330 WEEQGMRVWDETGVCKNLLQETAQ-RAGVSLPVYATTRSGPGHLPVFTCTVEVASMTFSG 388

Query: 203 GMDCSKRAAEQVAA 216
               +K+ AE+ AA
Sbjct: 389 EAAKTKKQAEKNAA 402



 Score = 36.2 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           K +LQE A       P Y    R GPDH PRF   V  +G        C+     + AAA
Sbjct: 232 KNQLQELAQRSCFNLPAY-ACIREGPDHAPRFKATVNFNGEVFESPNYCNTLRQAEHAAA 290

Query: 218 EV----LKREG 224
           EV    L R G
Sbjct: 291 EVALNTLSRRG 301


>gi|74148073|dbj|BAE22359.1| unnamed protein product [Mus musculus]
          Length = 745

 Score = 36.6 bits (83), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 16/92 (17%)

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTP--------------EYKVTFRSGPDHDPRF 189
           ++R L+ G      K +L  W    + VTP              +Y++  ++GP H P F
Sbjct: 98  RKRPLEEGNGGHFCKLQLI-WKKLSWSVTPKNALVQLHELKPGLQYRMVSQTGPVHAPVF 156

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V VE++GL   +G   +K+ A+  AA   LK
Sbjct: 157 AVAVEVNGLT-FEGTGPTKKKAKMRAAEMALK 187


>gi|147820257|emb|CAN71476.1| hypothetical protein VITISV_038619 [Vitis vinifera]
          Length = 552

 Score = 36.6 bits (83), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 4/68 (5%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ---V 214
           K  LQE AH + G+      T RSGP H P FT  VE++G+        +K+ AE+   +
Sbjct: 160 KNLLQETAH-RAGLNLPVYTTVRSGPGHVPVFTCTVELAGMNFTGESAKTKKQAEKNAAI 218

Query: 215 AAAEVLKR 222
           AA   LKR
Sbjct: 219 AAWSALKR 226


>gi|31542106|ref|NP_443209.2| double-stranded RNA-specific editase B2 [Mus musculus]
 gi|33112435|sp|Q9JI20|RED2_MOUSE RecName: Full=Double-stranded RNA-specific editase B2; AltName:
           Full=RNA-dependent adenosine deaminase 3; AltName:
           Full=RNA-editing deaminase 2; AltName: Full=RNA-editing
           enzyme 2; AltName: Full=dsRNA adenosine deaminase B2
 gi|26329549|dbj|BAC28513.1| unnamed protein product [Mus musculus]
 gi|30851427|gb|AAH52426.1| Adenosine deaminase, RNA-specific, B2 [Mus musculus]
 gi|74224054|dbj|BAE23882.1| unnamed protein product [Mus musculus]
 gi|74226553|dbj|BAE23939.1| unnamed protein product [Mus musculus]
 gi|148700330|gb|EDL32277.1| adenosine deaminase, RNA-specific, B2, isoform CRA_b [Mus musculus]
          Length = 745

 Score = 36.6 bits (83), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 16/92 (17%)

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTP--------------EYKVTFRSGPDHDPRF 189
           ++R L+ G      K +L  W    + VTP              +Y++  ++GP H P F
Sbjct: 98  RKRPLEEGNGGHFCKLQLI-WKKLSWSVTPKNALVQLHELKPGLQYRMVSQTGPVHAPVF 156

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V VE++GL   +G   +K+ A+  AA   LK
Sbjct: 157 AVAVEVNGLT-FEGTGPTKKKAKMRAAEMALK 187


>gi|321468345|gb|EFX79330.1| hypothetical protein DAPPUDRAFT_244967 [Daphnia pulex]
          Length = 96

 Score = 36.6 bits (83), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L EW   +    PEY+V  +SGP H   + +  ++S     +G   SK+AA+  AA ++L
Sbjct: 30  LSEWRFTRHSSLPEYRVVRKSGPSHSKTYFMTCKLSDRV-TEGEGKSKKAAKNDAAQKML 88

Query: 221 K 221
           +
Sbjct: 89  Q 89


>gi|41053389|ref|NP_956291.1| RISC-loading complex subunit tarbp2 [Danio rerio]
 gi|82240186|sp|Q7SXR1|TRBP2_DANRE RecName: Full=RISC-loading complex subunit tarbp2
 gi|33311802|gb|AAH55390.1| TAR (HIV) RNA binding protein 2 [Danio rerio]
          Length = 346

 Score = 36.6 bits (83), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 43/96 (44%), Gaps = 10/96 (10%)

Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKTE----LQEWAHAKFGVTPEYKVTFRSGPDHD 186
           GIE+ G        Q  +KS    + A+      LQE    K    PEY VT  SGP H 
Sbjct: 115 GIEMEGE-----CPQSEMKSSSSTQQAECNPVGALQELVVQKGWRLPEYTVTQESGPAHR 169

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             FT+   +       G   SK+ A++ AAA++L R
Sbjct: 170 KEFTMTCRVERFVEI-GSGTSKKLAKRNAAAKMLSR 204


>gi|2326524|emb|CAA55967.1| IFI-4 [Homo sapiens]
 gi|12711292|emb|CAA67169.1| dsRNA adenosine deaminase [Homo sapiens]
          Length = 931

 Score = 36.6 bits (83), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+AA E
Sbjct: 322 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 380

Query: 219 VLK 221
            +K
Sbjct: 381 AMK 383


>gi|169605473|ref|XP_001796157.1| hypothetical protein SNOG_05760 [Phaeosphaeria nodorum SN15]
 gi|111065704|gb|EAT86824.1| hypothetical protein SNOG_05760 [Phaeosphaeria nodorum SN15]
          Length = 159

 Score = 36.6 bits (83), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 16/142 (11%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSI-------SHSYQESYERLEFLGDRILGL 53
           +SAL  S  E  + + F NR LL +AL ++ +       SH  Q + + L  LGD  +  
Sbjct: 8   ISALILSACEALLSHTFTNRLLLLEALNNTGLPLVYNAKSHVLQRN-DALAVLGDARMDA 66

Query: 54  LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
           ++    ++      +G+ S          T +Q+ R L + +++       K+  + + S
Sbjct: 67  ILCRWWWDAGFQRVKGQWSQARLDKCGNVTLAQLGRRLGVDTYV------IKNPGTVVVS 120

Query: 114 --IQADVVESLIAALYLDGGIE 133
             + A  VE+L+ A+YLDGG E
Sbjct: 121 DKMVAMAVEALMGAVYLDGGEE 142


>gi|70167113|ref|NP_001020278.1| double-stranded RNA-specific adenosine deaminase isoform d [Homo
           sapiens]
 gi|301601658|ref|NP_001180424.1| double-stranded RNA-specific adenosine deaminase isoform d [Homo
           sapiens]
 gi|55666218|emb|CAH71907.1| adenosine deaminase, RNA-specific [Homo sapiens]
 gi|55960911|emb|CAI16183.1| adenosine deaminase, RNA-specific [Homo sapiens]
 gi|55961272|emb|CAI17375.1| adenosine deaminase, RNA-specific [Homo sapiens]
 gi|119573568|gb|EAW53183.1| adenosine deaminase, RNA-specific, isoform CRA_a [Homo sapiens]
 gi|119573572|gb|EAW53187.1| adenosine deaminase, RNA-specific, isoform CRA_a [Homo sapiens]
          Length = 931

 Score = 36.6 bits (83), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+AA E
Sbjct: 322 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 380

Query: 219 VLK 221
            +K
Sbjct: 381 AMK 383


>gi|8699065|gb|AAF78580.1| RNA adenosine deaminase RED2 [Mus musculus]
          Length = 731

 Score = 36.6 bits (83), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 16/92 (17%)

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTP--------------EYKVTFRSGPDHDPRF 189
           ++R L+ G      K +L  W    + VTP              +Y++  ++GP H P F
Sbjct: 88  RKRPLEEGNGGHFCKLQLI-WKKLSWSVTPKNALVQLHELKPGLQYRMVSQTGPVHAPVF 146

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V VE++GL   +G   +K+ A+  AA   LK
Sbjct: 147 AVAVEVNGLT-FEGTGPTKKKAKMRAAEMALK 177


>gi|116204679|ref|XP_001228150.1| hypothetical protein CHGG_10223 [Chaetomium globosum CBS 148.51]
 gi|88176351|gb|EAQ83819.1| hypothetical protein CHGG_10223 [Chaetomium globosum CBS 148.51]
          Length = 327

 Score = 36.6 bits (83), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 26  ALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
           ALTHS +  +  + SYE+LE++GD  L L+ S L+   F +   G  S     LV   T 
Sbjct: 75  ALTHSGMRKNLSDPSYEQLEWIGDVYLELIASELISQTFPTLDPGRSSHYREMLVRNSTL 134

Query: 85  SQVA 88
            Q A
Sbjct: 135 GQFA 138


>gi|332810381|ref|XP_513841.3| PREDICTED: double-stranded RNA-specific adenosine deaminase [Pan
           troglodytes]
          Length = 931

 Score = 36.6 bits (83), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+AA E
Sbjct: 322 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 380

Query: 219 VLK 221
            +K
Sbjct: 381 AMK 383


>gi|148700329|gb|EDL32276.1| adenosine deaminase, RNA-specific, B2, isoform CRA_a [Mus musculus]
          Length = 742

 Score = 36.6 bits (83), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 16/92 (17%)

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTP--------------EYKVTFRSGPDHDPRF 189
           ++R L+ G      K +L  W    + VTP              +Y++  ++GP H P F
Sbjct: 98  RKRPLEEGNGGHFCKLQLI-WKKLSWSVTPKNALVQLHELKPGLQYRMVSQTGPVHAPVF 156

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V VE++GL   +G   +K+ A+  AA   LK
Sbjct: 157 AVAVEVNGLT-FEGTGPTKKKAKMRAAEMALK 187


>gi|226498844|ref|NP_001146621.1| hypothetical protein LOC100280218 [Zea mays]
 gi|219888055|gb|ACL54402.1| unknown [Zea mays]
 gi|224029829|gb|ACN33990.1| unknown [Zea mays]
          Length = 289

 Score = 36.6 bits (83), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           K +LQE A       P Y    R GPDH PRF   V  +G      + CS     + AAA
Sbjct: 3   KNQLQELAQRSCFNLPSYSC-IREGPDHAPRFKATVNFNGEMFESPVFCSTLRQAEHAAA 61

Query: 218 EVLKRE 223
           EV   E
Sbjct: 62  EVALNE 67



 Score = 35.8 bits (81), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           K  LQE AH + G+      T RSGP H P F   VE++G A       +K+ A++ AA
Sbjct: 89  KNLLQETAH-RAGLKLPIYTTIRSGPGHTPVFACTVELAGKAFTGNPGKTKKQAQKNAA 146


>gi|145523894|ref|XP_001447780.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124415302|emb|CAK80383.1| unnamed protein product [Paramecium tetraurelia]
          Length = 357

 Score = 36.6 bits (83), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 52/236 (22%), Positives = 101/236 (42%), Gaps = 33/236 (13%)

Query: 15  YAFANRSLLEKALTHSSISHSYQE---------SYERLEFLGDRILGLLISTLLFNHFDS 65
           ++F N + L +ALT+      YQ          + E    +G  IL    S  L      
Sbjct: 48  FSFQNTNTLAQALTNKIHELEYQSKKGTKYPFGNNEDFVGIGQMILEFFFSDYLIQRGYP 107

Query: 66  AKE------GELSVRFNSLVSAETCSQVARELDLASFIRVSS--DLRKDVCSFMTSIQAD 117
            KE       +L +    L+S    + +A    + + ++V +  +L+K+       I A+
Sbjct: 108 NKETQIKKSSDLVLLRQRLLSERNLADIALSYKIDNIVQVGNQINLKKN-----PKILAE 162

Query: 118 VVESLIAALYLDGGI------EVAGTFVDKYW-KQRALKSGKFRRDAKTELQEWAHAKFG 170
            ++S+IAA Y D G       EV    + +   K +A+   + +++ K+   E+ +    
Sbjct: 163 TLKSIIAAQYYDSGYDLDHLREVVQPILKQVLDKGQAVPLVELKQNPKSAFLEFVNGCTN 222

Query: 171 VTPEYKVTFR--SGPDHDP--RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           + P+  V ++  S  + +P   + V +E++ L   +    +KR  EQ+   + LKR
Sbjct: 223 LKPKVSVEWKKDSSQNGNPINIYQVQLELNNLLLIKREGVNKRNTEQLVYRDALKR 278


>gi|281210415|gb|EFA84581.1| hypothetical protein PPL_01571 [Polysphondylium pallidum PN500]
          Length = 198

 Score = 36.6 bits (83), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 12/92 (13%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFD-SAKEGELSVRFNSLVSAETCSQVARELDLASF 96
           + +E  E  GD+ILG  +  ++   +D   K G  S   +S V+ ET SQ+   L++  +
Sbjct: 39  DDFENKECFGDKILGYRVVEMVTTEYDFVPKPGTTSRILDSSVANETLSQLYSRLEIEPY 98

Query: 97  IR--VSSDLRKDVCSFMTSIQADVVESLIAAL 126
           I     S+ +K         +ADVVE +I  L
Sbjct: 99  ITGPAFSNYKK---------KADVVEVIICEL 121


>gi|297663364|ref|XP_002810145.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like
           isoform 4 [Pongo abelii]
 gi|297663366|ref|XP_002810146.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like
           isoform 5 [Pongo abelii]
          Length = 931

 Score = 36.6 bits (83), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+AA E
Sbjct: 322 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 380

Query: 219 VLK 221
            +K
Sbjct: 381 AMK 383


>gi|156396886|ref|XP_001637623.1| predicted protein [Nematostella vectensis]
 gi|156224737|gb|EDO45560.1| predicted protein [Nematostella vectensis]
          Length = 332

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 4/50 (8%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILG 52
           A++    EKRIGY F+N+  L +ALTH+    SY ++  +  F G  +L 
Sbjct: 190 AVQLQGFEKRIGYEFSNKLYLIQALTHA----SYSQNSPKHHFFGHALLA 235


>gi|28277444|gb|AAH44344.1| Adar protein [Danio rerio]
          Length = 917

 Score = 36.6 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 25/44 (56%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           T + GP HDPRF   V++      +    SK+AA Q+AA E +K
Sbjct: 764 TGQEGPSHDPRFMFRVKVGERLFQEASAPSKKAARQLAAEEAVK 807


>gi|73696282|gb|AAZ80928.1| nuclear RNase III Drosha [Macaca mulatta]
          Length = 174

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 4/75 (5%)

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC--SFMTSIQADVVE 120
           F S +EG L+    ++V  +  + +A++L+L  F+  +     D+C  S +    A+  E
Sbjct: 2   FPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHG--PDLCRESDLRHAMANCFE 59

Query: 121 SLIAALYLDGGIEVA 135
           +LI A+YL+G +E A
Sbjct: 60  ALIGAVYLEGSLEEA 74


>gi|3334381|sp|Q91836|PRKAB_XENLA RecName: Full=Interferon-inducible double stranded RNA-dependent
           protein kinase activator A homolog B; AltName:
           Full=Double-stranded RNA-binding protein A; AltName:
           Full=XlRBPA
 gi|214739|gb|AAA49947.1| RNA binding protein [Xenopus laevis]
          Length = 298

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           LQE A  K    PEY V   SGP H   FT+   +       G   SK+ A++VAA ++L
Sbjct: 117 LQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFV-ETGSGTSKQVAKRVAAEKLL 175

Query: 221 KR 222
            +
Sbjct: 176 TK 177


>gi|148234413|ref|NP_001079500.1| protein kinase, interferon-inducible double stranded RNA dependent
           activator [Xenopus laevis]
 gi|82176774|sp|Q7ZYA5|PRKAA_XENLA RecName: Full=Interferon-inducible double stranded RNA-dependent
           protein kinase activator A homolog A
 gi|27696370|gb|AAH43873.1| Rbpa protein [Xenopus laevis]
          Length = 309

 Score = 36.2 bits (82), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           LQE A  K    PEY V   SGP H   FT+   +       G   SK+ A++VAA ++L
Sbjct: 128 LQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFV-ETGSGTSKQVAKRVAAEKLL 186

Query: 221 KR 222
            +
Sbjct: 187 TK 188


>gi|242821621|ref|XP_002487717.1| dsRNA-specific ribonuclease III, putative [Talaromyces stipitatus
           ATCC 10500]
 gi|218712638|gb|EED12063.1| dsRNA-specific ribonuclease III, putative [Talaromyces stipitatus
           ATCC 10500]
          Length = 129

 Score = 36.2 bits (82), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 23/127 (18%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE+ I Y F +R+LL +AL        +Q   +RL  LGD+++ L++    +    S  +
Sbjct: 6   LERIIDYTFKDRNLLNEAL--------HQTQNKRLALLGDKVVALMLIDSWYQTGGSCYD 57

Query: 69  GELSVRFNSLV----SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           G      NSL+    S E  +  A +  L   +R  S          T       E+++ 
Sbjct: 58  G------NSLLQHAASNEAMANRAIQTHLKDMVRRQSHQSPSTHGLATDF-----EAVVG 106

Query: 125 ALYLDGG 131
           A+++D G
Sbjct: 107 AVWIDCG 113


>gi|298204936|emb|CBI34243.3| unnamed protein product [Vitis vinifera]
          Length = 551

 Score = 36.2 bits (82), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
           K  LQE AH + G+      T RSGP H P F+  VEI+G++
Sbjct: 89  KNLLQETAH-RAGLNLPVYTTIRSGPGHVPVFSCTVEIAGMS 129



 Score = 35.8 bits (81), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           K +LQE A       P Y    R GPDH PRF   V  +G        CS     + AAA
Sbjct: 3   KNQLQELAQRSCFNLPSYSC-IREGPDHAPRFKATVNFNGETFESPSFCSTLRQAEHAAA 61

Query: 218 EV 219
           EV
Sbjct: 62  EV 63


>gi|126307762|ref|XP_001373191.1| PREDICTED: similar to adenosine deaminase, RNA-specific
           [Monodelphis domestica]
          Length = 1131

 Score = 36.2 bits (82), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 30/54 (55%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           K G T E+ +  + GP HDP+F   V++        M  SK+AA+Q+AA   +K
Sbjct: 558 KNGSTCEFLLISQEGPAHDPKFKYCVKMGSQTFPTMMANSKKAAKQMAAEVAVK 611


>gi|238575785|ref|XP_002387790.1| hypothetical protein MPER_13270 [Moniliophthora perniciosa FA553]
 gi|215448580|gb|EEB88720.1| hypothetical protein MPER_13270 [Moniliophthora perniciosa FA553]
          Length = 361

 Score = 36.2 bits (82), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 175 YKVTF---RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           Y VT+   + GP HDP +TVV E++G    +G   S + A   AA +    +  W
Sbjct: 304 YTVTYAASKEGPPHDPVWTVVYELNGQTQGKGTGRSMQIATHAAATDAWLNKRNW 358


>gi|157959950|ref|YP_001499984.1| hypothetical protein Spea_0120 [Shewanella pealeana ATCC 700345]
 gi|157844950|gb|ABV85449.1| protein of unknown function DUF692 [Shewanella pealeana ATCC
           700345]
          Length = 290

 Score = 36.2 bits (82), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 18/121 (14%)

Query: 17  FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           F    LL    T  ++ H  Q   +  +FLG+RIL   +ST             +S R N
Sbjct: 108 FKVADLLPLPYTQEAVMHISQRIKQTQDFLGERILLENVSTY------------MSCRHN 155

Query: 77  SLVSAETCSQVARE------LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
            L   E  + +A E      LD+ +    S +L + + SFM +I  + V+ +  A + D 
Sbjct: 156 ELSEGEFIAAIAEEADCYLLLDINNAFVTSVNLNQSMQSFMDAIPVERVKQIHLAGFHDK 215

Query: 131 G 131
           G
Sbjct: 216 G 216


>gi|12711291|emb|CAA67170.1| dsRNA adenosine deaminase [Homo sapiens]
          Length = 1221

 Score = 36.2 bits (82), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+AA E
Sbjct: 612 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 670

Query: 219 VLK 221
            +K
Sbjct: 671 AMK 673


>gi|225451189|ref|XP_002271134.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 543

 Score = 36.2 bits (82), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
           K  LQE AH + G+      T RSGP H P F+  VEI+G++
Sbjct: 89  KNLLQETAH-RAGLNLPVYTTIRSGPGHVPVFSCTVEIAGMS 129



 Score = 35.4 bits (80), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           K +LQE A       P Y    R GPDH PRF   V  +G        CS     + AAA
Sbjct: 3   KNQLQELAQRSCFNLPSYSC-IREGPDHAPRFKATVNFNGETFESPSFCSTLRQAEHAAA 61

Query: 218 EV 219
           EV
Sbjct: 62  EV 63


>gi|2795789|gb|AAB97116.1| RNA adenosine deaminase [Homo sapiens]
          Length = 1200

 Score = 36.2 bits (82), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+AA E
Sbjct: 617 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 675

Query: 219 VLK 221
            +K
Sbjct: 676 AMK 678


>gi|70167032|ref|NP_056656.2| double-stranded RNA-specific adenosine deaminase isoform c [Homo
           sapiens]
 gi|119573570|gb|EAW53185.1| adenosine deaminase, RNA-specific, isoform CRA_c [Homo sapiens]
          Length = 1181

 Score = 36.2 bits (82), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+AA E
Sbjct: 617 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 675

Query: 219 VLK 221
            +K
Sbjct: 676 AMK 678


>gi|2795790|gb|AAB97117.1| RNA adenosine deaminase [Homo sapiens]
          Length = 1181

 Score = 36.2 bits (82), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+AA E
Sbjct: 617 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 675

Query: 219 VLK 221
            +K
Sbjct: 676 AMK 678


>gi|915284|gb|AAC13782.1| p136 [Homo sapiens]
 gi|2795791|gb|AAB97118.1| RNA adenosine deaminase [Homo sapiens]
          Length = 1226

 Score = 36.2 bits (82), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+AA E
Sbjct: 617 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 675

Query: 219 VLK 221
            +K
Sbjct: 676 AMK 678


>gi|313104303|sp|P55265|DSRAD_HUMAN RecName: Full=Double-stranded RNA-specific adenosine deaminase;
           Short=DRADA; AltName: Full=136 kDa double-stranded
           RNA-binding protein; Short=p136; AltName:
           Full=Interferon-inducible protein 4; Short=IFI-4;
           AltName: Full=K88DSRBP
 gi|55666219|emb|CAH71908.1| adenosine deaminase, RNA-specific [Homo sapiens]
 gi|55960913|emb|CAI16185.1| adenosine deaminase, RNA-specific [Homo sapiens]
 gi|55961273|emb|CAI17376.1| adenosine deaminase, RNA-specific [Homo sapiens]
          Length = 1226

 Score = 36.2 bits (82), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+AA E
Sbjct: 617 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 675

Query: 219 VLK 221
            +K
Sbjct: 676 AMK 678


>gi|70166852|ref|NP_001102.2| double-stranded RNA-specific adenosine deaminase isoform a [Homo
           sapiens]
 gi|577170|gb|AAB06697.1| double-stranded RNA adenosine deaminase [Homo sapiens]
 gi|23398522|gb|AAH38227.1| Adenosine deaminase, RNA-specific [Homo sapiens]
 gi|119573571|gb|EAW53186.1| adenosine deaminase, RNA-specific, isoform CRA_d [Homo sapiens]
 gi|157928608|gb|ABW03600.1| adenosine deaminase, RNA-specific [synthetic construct]
 gi|157929250|gb|ABW03910.1| adenosine deaminase, RNA-specific [synthetic construct]
          Length = 1226

 Score = 36.2 bits (82), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+AA E
Sbjct: 617 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 675

Query: 219 VLK 221
            +K
Sbjct: 676 AMK 678


>gi|126341352|ref|XP_001373773.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 727

 Score = 36.2 bits (82), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 16/92 (17%)

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTP--------------EYKVTFRSGPDHDPRF 189
           ++R L+ G      K +L  W    + VTP              +YK+  ++GP H P F
Sbjct: 80  RKRPLEEGNSGHFCKLQLI-WKKLSWSVTPKNALVQLHELKPGLQYKMVSQTGPVHAPVF 138

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V VE++G    +G   +K+ A+  AA   LK
Sbjct: 139 AVAVEVNGFT-FEGTGPTKKKAKMRAAELALK 169


>gi|70166944|ref|NP_056655.2| double-stranded RNA-specific adenosine deaminase isoform b [Homo
           sapiens]
 gi|119573575|gb|EAW53190.1| adenosine deaminase, RNA-specific, isoform CRA_f [Homo sapiens]
          Length = 1200

 Score = 36.2 bits (82), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+AA E
Sbjct: 617 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 675

Query: 219 VLK 221
            +K
Sbjct: 676 AMK 678


>gi|194227228|ref|XP_001917073.1| PREDICTED: similar to Double-stranded RNA-specific editase B2
           (dsRNA adenosine deaminase B2) (RNA-dependent adenosine
           deaminase 3) (RNA-editing deaminase 2) (RNA-editing
           enzyme 2) [Equus caballus]
          Length = 732

 Score = 36.2 bits (82), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 16/92 (17%)

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTP--------------EYKVTFRSGPDHDPRF 189
           K+R L+ G      K +L  W    + VTP              +Y++  ++GP H P F
Sbjct: 97  KKRPLEEGNGSHLCKLQLI-WKKLSWSVTPKNALVQLHELRPGLQYRMVSQTGPVHAPVF 155

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V VE++GL   +G   +K+ A+  AA   L+
Sbjct: 156 AVAVEVNGLT-FEGTGPTKKKAKMRAAELALR 186


>gi|115463113|ref|NP_001055156.1| Os05g0307400 [Oryza sativa Japonica Group]
 gi|122169278|sp|Q0DJA3|DRB3_ORYSJ RecName: Full=Double-stranded RNA-binding protein 3; AltName:
           Full=dsRNA-binding protein 3
 gi|113578707|dbj|BAF17070.1| Os05g0307400 [Oryza sativa Japonica Group]
 gi|215704133|dbj|BAG92973.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 437

 Score = 36.2 bits (82), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 4/61 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF--TVVVEISGLAPAQGMDCSKRAAEQVA 215
           K+ LQE+A      TPEY  T + GP H+P F  TVV+  +      G   +++AAEQ A
Sbjct: 37  KSRLQEYAQKAGLQTPEYH-TSKEGPSHEPVFKSTVVINNTSYGSLPGFS-NRKAAEQSA 94

Query: 216 A 216
           A
Sbjct: 95  A 95


>gi|291409122|ref|XP_002720862.1| PREDICTED: adenosine deaminase, RNA-specific, B2-like [Oryctolagus
           cuniculus]
          Length = 734

 Score = 36.2 bits (82), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 16/92 (17%)

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTP--------------EYKVTFRSGPDHDPRF 189
           ++R L+ G      K +L  W    + VTP              +Y++  ++GP H P F
Sbjct: 87  RKRPLEEGNGGHLCKLQLI-WKKLSWSVTPKNALVQLHELKPGLQYRMVSQTGPVHAPVF 145

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V VE++GL   +G   +K+ A+  AA   LK
Sbjct: 146 AVAVEVNGLT-FEGTGPTKKKAKMRAAELALK 176


>gi|6730350|pdb|1DI2|A Chain A, Crystal Structure Of A Dsrna-Binding Domain Complexed With
           Dsrna: Molecular Basis Of Double-Stranded Rna-Protein
           Interactions
 gi|6730351|pdb|1DI2|B Chain B, Crystal Structure Of A Dsrna-Binding Domain Complexed With
           Dsrna: Molecular Basis Of Double-Stranded Rna-Protein
           Interactions
          Length = 69

 Score = 36.2 bits (82), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           LQE A  K    PEY V   SGP H   FT+   +       G   SK+ A++VAA ++L
Sbjct: 6   LQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFV-ETGSGTSKQVAKRVAAEKLL 64

Query: 221 KR 222
            +
Sbjct: 65  TK 66


>gi|2326526|emb|CAA55968.1| IFI-4 [Homo sapiens]
          Length = 1226

 Score = 36.2 bits (82), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+AA E
Sbjct: 617 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 675

Query: 219 VLK 221
            +K
Sbjct: 676 AMK 678


>gi|297663362|ref|XP_002810144.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like
           isoform 3 [Pongo abelii]
          Length = 1181

 Score = 35.8 bits (81), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+AA E
Sbjct: 617 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 675

Query: 219 VLK 221
            +K
Sbjct: 676 AMK 678


>gi|297663358|ref|XP_002810142.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like
           isoform 1 [Pongo abelii]
          Length = 1226

 Score = 35.8 bits (81), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+AA E
Sbjct: 617 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 675

Query: 219 VLK 221
            +K
Sbjct: 676 AMK 678


>gi|297663360|ref|XP_002810143.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like
           isoform 2 [Pongo abelii]
          Length = 1200

 Score = 35.8 bits (81), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+AA E
Sbjct: 617 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 675

Query: 219 VLK 221
            +K
Sbjct: 676 AMK 678


>gi|242084480|ref|XP_002442665.1| hypothetical protein SORBIDRAFT_08g000900 [Sorghum bicolor]
 gi|241943358|gb|EES16503.1| hypothetical protein SORBIDRAFT_08g000900 [Sorghum bicolor]
          Length = 394

 Score = 35.8 bits (81), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 4/61 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF--TVVVEISGLAPAQGMDCSKRAAEQVA 215
           K+ LQE+A      TPEY  T + GP H+P F  TV+V  +      G   S++AAEQ A
Sbjct: 39  KSRLQEYAQKAGLPTPEYH-TLKEGPSHEPVFKSTVLVNNTTYESLPGF-FSRKAAEQSA 96

Query: 216 A 216
           A
Sbjct: 97  A 97


>gi|297280145|ref|XP_001111902.2| PREDICTED: double-stranded RNA-specific adenosine deaminase-like
           isoform 1 [Macaca mulatta]
          Length = 1199

 Score = 35.8 bits (81), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+AA E
Sbjct: 616 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 674

Query: 219 VLK 221
            +K
Sbjct: 675 AMK 677


>gi|50548505|ref|XP_501722.1| YALI0C11429p [Yarrowia lipolytica]
 gi|49647589|emb|CAG82032.1| YALI0C11429p [Yarrowia lipolytica]
          Length = 467

 Score = 35.8 bits (81), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 10/97 (10%)

Query: 17  FANRSLL----------EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           F +RS+L           K  T +    +   SYERLEF+GD I+  +++ ++++ F   
Sbjct: 157 FTHRSMLLGDTGTASEVHKTATKAGYDQTGNFSYERLEFVGDSIVNNILTKIIYDVFPGD 216

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL 103
            +  LS     +++     + A      S +RV+S +
Sbjct: 217 DQSHLSFLRGQVIANIVLCRWAAIYGFPSKLRVASSV 253


>gi|242760076|ref|XP_002339915.1| conserved hypothetical protein [Talaromyces stipitatus ATCC
          10500]
 gi|218723111|gb|EED22528.1| conserved hypothetical protein [Talaromyces stipitatus ATCC
          10500]
          Length = 129

 Score = 35.8 bits (81), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 8/49 (16%)

Query: 7  STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLI 55
          +++E  IGY F +R LL KAL        +Q   +RL  LGD+++ L++
Sbjct: 4  NSVEGIIGYTFNDRELLAKAL--------HQTQNKRLALLGDKVVALVL 44


>gi|297280147|ref|XP_002801844.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like
           isoform 3 [Macaca mulatta]
          Length = 1180

 Score = 35.8 bits (81), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+AA E
Sbjct: 616 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 674

Query: 219 VLK 221
            +K
Sbjct: 675 AMK 677


>gi|297280143|ref|XP_002801843.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like
           isoform 2 [Macaca mulatta]
          Length = 1225

 Score = 35.8 bits (81), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+AA E
Sbjct: 616 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 674

Query: 219 VLK 221
            +K
Sbjct: 675 AMK 677


>gi|255569488|ref|XP_002525711.1| hypothetical protein RCOM_1321840 [Ricinus communis]
 gi|223535011|gb|EEF36694.1| hypothetical protein RCOM_1321840 [Ricinus communis]
          Length = 162

 Score = 35.8 bits (81), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197
           KT+LQE  H K    PEY  T + G DH+P F   V ++G
Sbjct: 3   KTKLQELCHQKTWSLPEYSTT-KVGQDHNPIFHATVIVNG 41


>gi|332220545|ref|XP_003259416.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
           3 [Nomascus leucogenys]
          Length = 1234

 Score = 35.8 bits (81), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+AA E
Sbjct: 670 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 728

Query: 219 VLK 221
            +K
Sbjct: 729 AMK 731


>gi|332220543|ref|XP_003259415.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
           2 [Nomascus leucogenys]
          Length = 1253

 Score = 35.8 bits (81), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+AA E
Sbjct: 670 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 728

Query: 219 VLK 221
            +K
Sbjct: 729 AMK 731


>gi|224613107|dbj|BAH24216.1| dsRNA-specific ribonuclease RNaseIII [Onion yellows phytoplasma]
          Length = 149

 Score = 35.8 bits (81), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 4/93 (4%)

Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT 172
           SI AD  E+L  A+YLD G   A             K+  +  D KT+LQE   ++   T
Sbjct: 23  SIMADTFEALFGAIYLDLGYLTAKKVFHNIVLPHLAKT-IYIIDFKTQLQEIVQSE-KKT 80

Query: 173 PEYKVTFRSGPDHDPRFT--VVVEISGLAPAQG 203
            +YK+    GP H   F   V +E + L   +G
Sbjct: 81  IQYKIVQEQGPAHSKNFVAEVYLEKNLLGTGEG 113


>gi|332220541|ref|XP_003259414.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
           1 [Nomascus leucogenys]
          Length = 1279

 Score = 35.8 bits (81), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+AA E
Sbjct: 670 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 728

Query: 219 VLK 221
            +K
Sbjct: 729 AMK 731


>gi|326507276|dbj|BAJ95715.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 580

 Score = 35.8 bits (81), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 20/40 (50%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197
           K  LQE AH      P Y  T RSGP H P FT  VE++G
Sbjct: 89  KNLLQETAHRAGLKLPMY-TTIRSGPGHTPTFTCTVELAG 127


>gi|62089368|dbj|BAD93128.1| adenosine deaminase, RNA-specific isoform ADAR-a variant [Homo
           sapiens]
          Length = 1244

 Score = 35.8 bits (81), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+AA E
Sbjct: 635 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 693

Query: 219 VLK 221
            +K
Sbjct: 694 AMK 696


>gi|31874703|emb|CAD98075.1| hypothetical protein [Homo sapiens]
          Length = 1257

 Score = 35.8 bits (81), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+AA E
Sbjct: 648 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 706

Query: 219 VLK 221
            +K
Sbjct: 707 AMK 709


>gi|34364836|emb|CAE45853.1| hypothetical protein [Homo sapiens]
          Length = 1278

 Score = 35.8 bits (81), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+AA E
Sbjct: 648 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 706

Query: 219 VLK 221
            +K
Sbjct: 707 AMK 709


>gi|321468964|gb|EFX79946.1| hypothetical protein DAPPUDRAFT_318955 [Daphnia pulex]
          Length = 311

 Score = 35.8 bits (81), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 4/58 (6%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85
           T ++++    ++ +RLE LGD +LGLL+S  L+  F   K G+L +R     SA TC+
Sbjct: 98  TTANLTSCTVKNGDRLEVLGDAVLGLLVSIGLYRTFTKYKPGDL-IRHR---SALTCN 151


>gi|156540328|ref|XP_001599266.1| PREDICTED: similar to adenosine deaminase, partial [Nasonia
           vitripennis]
          Length = 429

 Score = 35.8 bits (81), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 1/82 (1%)

Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
           K  K  A+ + K  ++ + +    A  +      YKV  ++GP H P FT+ V+I G + 
Sbjct: 150 KLLKTGAINAKKKHKNTQPKNAVCALNELKAGATYKVVSQTGPTHAPIFTIAVQIDGQS- 208

Query: 201 AQGMDCSKRAAEQVAAAEVLKR 222
            +G   +K+ A+  AA   L+ 
Sbjct: 209 YEGKGRTKKMAKHAAAELALRN 230


>gi|327291984|ref|XP_003230700.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like,
           partial [Anolis carolinensis]
          Length = 404

 Score = 35.8 bits (81), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E+A  K G   E+++  + GP HDP+F   V+I        +  SK+ A+Q+
Sbjct: 82  KNPVSALMEYAQ-KSGSVCEFQLLAQDGPPHDPKFKYCVKIGDQVFPAVVSNSKKGAKQM 140

Query: 215 AAAEVLK 221
           AA   ++
Sbjct: 141 AAEAAIR 147


>gi|321457253|gb|EFX68343.1| hypothetical protein DAPPUDRAFT_114652 [Daphnia pulex]
          Length = 201

 Score = 35.8 bits (81), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L EW        PEY+V  +SGP H   + +  ++S     +G+  SK+AA+  AA ++L
Sbjct: 135 LLEWRQTTHRPLPEYRVVRKSGPSHSKTYFMTCKLSERV-TEGVGKSKKAAKNDAAEKML 193

Query: 221 K 221
           +
Sbjct: 194 Q 194


>gi|221044884|dbj|BAH14119.1| unnamed protein product [Homo sapiens]
          Length = 970

 Score = 35.8 bits (81), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+AA E
Sbjct: 617 TTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEE 675

Query: 219 VLK 221
            +K
Sbjct: 676 AMK 678


>gi|2415555|emb|CAA04303.1| ribonuclease III [Campylobacter jejuni]
          Length = 73

 Score = 35.4 bits (80), Expect = 5.3,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 15 YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
          YAF + +    ALTH S   SY    ERL  +GD +L L++   LF++
Sbjct: 1  YAFPDTNHFIPALTHKSFKKSYNN--ERLVLIGDAVLDLVVGEYLFHN 46


>gi|269966648|ref|ZP_06180727.1| hypothetical protein VMC_21570 [Vibrio alginolyticus 40B]
 gi|269828715|gb|EEZ82970.1| hypothetical protein VMC_21570 [Vibrio alginolyticus 40B]
          Length = 445

 Score = 35.4 bits (80), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 7/86 (8%)

Query: 143 WKQRALKSGKFRRDAKTE------LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
           W  +  ++   R DA  E      LQE+A ++    P+Y V   SGP H+  F+V   I 
Sbjct: 92  WLYKLAQTLDIRLDASNEKPMKMVLQEYAQSRKLQAPQYDVVEISGPQHNQVFSVQCSIV 151

Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLKR 222
               A G   SK+ A + AA ++ ++
Sbjct: 152 N-EKAVGSGNSKKKASEDAAIKLYQK 176


>gi|255542426|ref|XP_002512276.1| hypothetical protein RCOM_1429110 [Ricinus communis]
 gi|223548237|gb|EEF49728.1| hypothetical protein RCOM_1429110 [Ricinus communis]
          Length = 568

 Score = 35.4 bits (80), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           K +LQE A       P Y    R GPDH PRF   V  +G        CS     + AAA
Sbjct: 3   KNQLQELAQRSCFNLPSYSC-IREGPDHAPRFKATVNFNGETFESPAFCSTLRQAEHAAA 61

Query: 218 EV 219
           EV
Sbjct: 62  EV 63



 Score = 34.7 bits (78), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 6/69 (8%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA----PAQGMDCSKRAAEQ 213
           K  LQE AH      P Y  T RSGP H P F+  VE++G++    PA+    +++ A  
Sbjct: 89  KNLLQETAHRAGLKLPVY-TTVRSGPGHVPVFSCTVELAGMSFTGEPARTKKQAQKNAA- 146

Query: 214 VAAAEVLKR 222
           +AA   LKR
Sbjct: 147 MAAWSALKR 155


>gi|317418804|emb|CBN80842.1| RISC-loading complex subunit tarbp2 [Dicentrarchus labrax]
          Length = 345

 Score = 35.4 bits (80), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           LQE    K    PEY VT  SGP H   FT+   +       G   SK+ A++ AAA++L
Sbjct: 145 LQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFVEI-GSGTSKKLAKRNAAAKML 203

Query: 221 KR 222
            R
Sbjct: 204 SR 205


>gi|321451362|gb|EFX63042.1| hypothetical protein DAPPUDRAFT_336024 [Daphnia pulex]
          Length = 270

 Score = 35.4 bits (80), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 59/112 (52%), Gaps = 5/112 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           +SA++    E+ + Y+F ++ +L +ALT+ +   S   +Y+RLE +GD   G L +   F
Sbjct: 97  LSAVK--AFEEILNYSFNDKEVLLEALTYGNSIRSL--NYQRLEVIGDAAFGFLAALNFF 152

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM 111
                   G++S   ++ V  +T   +A + +  ++I+ +  +L K +  F+
Sbjct: 153 KQSLYHSAGDISQLRSACVCNDTFGMLAAKRNFHAYIQNLPPNLVKHLEDFL 204


>gi|224130800|ref|XP_002328379.1| predicted protein [Populus trichocarpa]
 gi|222838094|gb|EEE76459.1| predicted protein [Populus trichocarpa]
          Length = 159

 Score = 35.4 bits (80), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           K  LQE AH      P Y  T RSGP H P F+  VE++G++       +K+ A++ AA
Sbjct: 89  KNLLQETAHRAGLKLPVY-TTIRSGPGHVPVFSCNVELAGMSFTGESARTKKQAQKNAA 146


>gi|325284065|ref|YP_004256606.1| double-stranded RNA binding domain-containing protein [Deinococcus
           proteolyticus MRP]
 gi|324315874|gb|ADY26989.1| double-stranded RNA binding domain protein [Deinococcus
           proteolyticus MRP]
          Length = 169

 Score = 35.4 bits (80), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           A  G++PE++V   SGP H PRF   V   G    QG   S+R AE+ AA + L+
Sbjct: 14  AAQGLSPEFRVDG-SGPAHAPRFVAEVWCDGQRLGQGEGRSRREAERGAAVQALE 67


>gi|18959240|ref|NP_579836.1| double-stranded RNA-specific editase B2 [Rattus norvegicus]
 gi|33112433|sp|P97616|RED2_RAT RecName: Full=Double-stranded RNA-specific editase B2; AltName:
           Full=RNA-dependent adenosine deaminase 3; AltName:
           Full=RNA-editing deaminase 2; AltName: Full=RNA-editing
           enzyme 2; AltName: Full=dsRNA adenosine deaminase B2
 gi|1814270|gb|AAB41862.1| double-stranded RNA specific adenosine deaminase [Rattus
           norvegicus]
          Length = 746

 Score = 35.4 bits (80), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 16/92 (17%)

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTP--------------EYKVTFRSGPDHDPRF 189
           ++R L+ G      K +L  W    + +TP              +Y++  ++GP H P F
Sbjct: 99  RKRPLEEGNGGHFCKLQLI-WKKLSWSMTPKNALVQLHELKPGLQYRMVSQTGPVHAPVF 157

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V VE++GL   +G   +K+ A+  AA   LK
Sbjct: 158 AVAVEVNGLT-FEGTGPTKKKAKMRAAEMALK 188


>gi|328852770|gb|EGG01913.1| hypothetical protein MELLADRAFT_66687 [Melampsora larici-populina
           98AG31]
          Length = 460

 Score = 35.4 bits (80), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 13/121 (10%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           ++++ Y F N +LL KALT   + H     +  LE++GD +L +  +  +  H    K  
Sbjct: 333 QEKLNYRFRNPNLLRKALT---LDHP---EFRLLEWIGDSVLDVWAAMEITKHRKGHKVS 386

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ-ADVVESLIAALYL 128
           + + RF  L + E   Q   +    SF  +   ++K    F+  +     VE+LI A++L
Sbjct: 387 KANERFMDLTNNEFLGQRVTD----SFKSLKHIIQKP--RFLGKLWLGKFVEALIGAVFL 440

Query: 129 D 129
           D
Sbjct: 441 D 441


>gi|242069683|ref|XP_002450118.1| hypothetical protein SORBIDRAFT_05g000800 [Sorghum bicolor]
 gi|241935961|gb|EES09106.1| hypothetical protein SORBIDRAFT_05g000800 [Sorghum bicolor]
          Length = 118

 Score = 35.4 bits (80), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 4/61 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF--TVVVEISGLAPAQGMDCSKRAAEQVA 215
           K+ LQE+A  K G+T     T + GP H+P F  TVVV  +      G   S++AAEQ A
Sbjct: 34  KSRLQEYAQ-KVGITTLEYHTLKEGPSHEPVFKSTVVVNNTRYESLPGF-FSRKAAEQSA 91

Query: 216 A 216
           A
Sbjct: 92  A 92


>gi|321451683|gb|EFX63253.1| hypothetical protein DAPPUDRAFT_335709 [Daphnia pulex]
 gi|321454090|gb|EFX65276.1| hypothetical protein DAPPUDRAFT_333337 [Daphnia pulex]
          Length = 121

 Score = 35.4 bits (80), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 25/40 (62%)

Query: 9  LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGD 48
          LE  I Y F N+ +L +A TH +  +    SYE+LE+LG+
Sbjct: 23 LEIIINYKFNNQLILLEASTHGTFHNPLCSSYEKLEYLGE 62


>gi|255946916|ref|XP_002564225.1| Pc22g01810 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211591242|emb|CAP97469.1| Pc22g01810 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 151

 Score = 35.4 bits (80), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 60/128 (46%), Gaps = 8/128 (6%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            LEK+I Y F +R LL +AL  S  +   Q+  + L   GD +L L+++  +    ++  
Sbjct: 17  VLEKKIQYRFVDRELLREALQAS--TDRNQDGNKTLALFGDLVLDLVLA--ISGRKENKP 72

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
            G++             S+   +L +  FI    +  + V     ++ A  +E+++ A+Y
Sbjct: 73  RGKIKEMSTQKAGNVHLSKQGFDLGIDKFI--VKNPSQTVVGI--NVMATTMEAIVGAVY 128

Query: 128 LDGGIEVA 135
           LD   ++A
Sbjct: 129 LDCNKQIA 136


>gi|149031451|gb|EDL86441.1| adenosine deaminase, RNA-specific, B2 [Rattus norvegicus]
          Length = 746

 Score = 35.4 bits (80), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 16/92 (17%)

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTP--------------EYKVTFRSGPDHDPRF 189
           ++R L+ G      K +L  W    + +TP              +Y++  ++GP H P F
Sbjct: 99  RKRPLEEGNGGHFCKLQLI-WKKLSWSMTPKNALVQLHELKPGLQYRMVSQTGPVHAPVF 157

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V VE++GL   +G   +K+ A+  AA   LK
Sbjct: 158 AVAVEVNGLT-FEGTGPTKKKAKMRAAEMALK 188


>gi|1932815|gb|AAB51688.1| dsRNA adenosine deaminase [Xenopus laevis]
          Length = 1124

 Score = 35.4 bits (80), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 28/49 (57%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           K G   E+++  + GP HDP+FT  V+I        +  SK+ A+Q+AA
Sbjct: 544 KSGSMCEFQLVQQEGPPHDPKFTYTVKIGNQTFPPVVANSKKMAKQLAA 592


>gi|297736909|emb|CBI26110.3| unnamed protein product [Vitis vinifera]
          Length = 826

 Score = 35.4 bits (80), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           K +LQE A       P Y    R GPDH PRF   V  +G        C+     + AAA
Sbjct: 3   KNQLQELAQRSCFNLPSY-ACIREGPDHAPRFKATVNFNGEVFESPTFCNTLRQAEHAAA 61

Query: 218 EV 219
           EV
Sbjct: 62  EV 63


>gi|281353109|gb|EFB28693.1| hypothetical protein PANDA_013628 [Ailuropoda melanoleuca]
          Length = 637

 Score = 35.4 bits (80), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 16/92 (17%)

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTP--------------EYKVTFRSGPDHDPRF 189
           ++R L+ G      K +L  W    + VTP              +Y++  ++GP H P F
Sbjct: 35  RKRPLEEGNGSHLCKLQLV-WKKLSWSVTPKNALVQLHDLRPGLQYRMVSQTGPVHAPVF 93

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V VE++GL   +G   +K+ A+  AA   L+
Sbjct: 94  AVAVEVNGLT-FEGTGPTKKKAKMRAAELALR 124


>gi|18858253|ref|NP_571671.1| double-stranded RNA-specific adenosine deaminase [Danio rerio]
 gi|7770273|gb|AAF69672.1| double-stranded RNA-specific editase [Danio rerio]
          Length = 1382

 Score = 35.4 bits (80), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 10/92 (10%)

Query: 106 DVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWA 165
           D+  F+ +I+++V  SL A       +E      ++  K +  +S    ++  + L E+A
Sbjct: 587 DIPEFLNTIRSEVAVSLAAPPPPTQSMES-----NRLQKLKEARS----KNPVSGLMEFA 637

Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197
               G T E+ +  +SGP HDPRF + V + G
Sbjct: 638 Q-HLGYTCEFLLLEQSGPSHDPRFRMQVMLDG 668



 Score = 35.0 bits (79), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 4/89 (4%)

Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
           ++ GT        R+L  GK   +  + L E +  + G   ++  T + GP HDPRF   
Sbjct: 723 DMGGTDTPPQALSRSLPGGK---NPVSVLMEHSQ-RSGHPIQFIKTGQEGPSHDPRFMFR 778

Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           V++      +    SK+AA Q+AA E +K
Sbjct: 779 VKVGERLFQEASAPSKKAARQLAAEEAVK 807


>gi|321468344|gb|EFX79329.1| hypothetical protein DAPPUDRAFT_244966 [Daphnia pulex]
          Length = 96

 Score = 35.4 bits (80), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L EW   +    PEY+V   SGP H   + +  ++S     +G   SK+AA+  AA ++L
Sbjct: 30  LSEWRFTRHSSLPEYRVVRTSGPSHSKTYFMTCKLSDRV-TEGEGKSKKAAKNDAAQKML 88

Query: 221 K 221
           +
Sbjct: 89  Q 89


>gi|301628882|ref|XP_002943575.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-specific
           adenosine deaminase-like [Xenopus (Silurana) tropicalis]
          Length = 1170

 Score = 35.0 bits (79), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 28/50 (56%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           +K G   E+++  + GP HDP+FT  V I        +  SK+ A+Q+AA
Sbjct: 587 SKSGSMCEFQLVSQEGPPHDPKFTYTVRIGNQTFPPVVANSKKMAKQLAA 636


>gi|330467614|ref|YP_004405357.1| GntR family regulator [Verrucosispora maris AB-18-032]
 gi|328810585|gb|AEB44757.1| GntR family regulator [Verrucosispora maris AB-18-032]
          Length = 255

 Score = 35.0 bits (79), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 60/145 (41%), Gaps = 15/145 (10%)

Query: 17  FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
              R LLE  + H +   + QE+ +RL  L DR+  L+   + ++  D A        F+
Sbjct: 117 VVTRRLLESDMAHVAARLAGQETLDRLRALVDRMDELVDDQVAYHDHDRA--------FH 168

Query: 77  SLVSAETCSQVAR------ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
            ++   + +++AR      E  + +  R     ++ +C         + E  IAA   DG
Sbjct: 169 DVIMQASGNRIARGVVRSLESQVVNTARYMGRTQRSLCVASNRGHRRIYER-IAARDPDG 227

Query: 131 GIEVAGTFVDKYWKQRALKSGKFRR 155
             E   T + + W  R   SGK  R
Sbjct: 228 AAEAMFTHITEAWLVRRKGSGKVPR 252


>gi|325181016|emb|CCA15426.1| AlNc14C11G1368 [Albugo laibachii Nc14]
          Length = 841

 Score = 35.0 bits (79), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 1/101 (0%)

Query: 39  SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
           S +RL FLG+  L  L +  L        +  +  +  S+V  ET   + + + L S ++
Sbjct: 453 SQDRLAFLGNHALKFLAAFSLSFKIADGSDNPME-QAPSVVLDETVRDITQSVGLDSLLQ 511

Query: 99  VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
            + +L         S+  + + +L+ A+YL  GIE   TF+
Sbjct: 512 CAFNLSTLKSDVKQSMFENCIRALVGAIYLASGIEACQTFL 552


>gi|145300633|ref|YP_001143474.1| 2',3'-cyclic-nucleotide 2'-phosphodiesterase [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142853405|gb|ABO91726.1| 2',3'-cyclic-nucleotide 2'-phosphodiesterase [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 659

 Score = 35.0 bits (79), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 4/81 (4%)

Query: 142 YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201
           Y      ++G F+RDAK ++ +W+  KF  TP   +  +   D     TV V I GL P 
Sbjct: 146 YVNANVFEAGAFKRDAKGQI-DWSGNKF--TPYLLLERKVKDDKGQEQTVKVGILGLTPP 202

Query: 202 QGMDCSKRAAE-QVAAAEVLK 221
           Q +   KR  E +V  A++++
Sbjct: 203 QVLQWDKRHLEGKVVVADMVE 223


>gi|70986266|ref|XP_748627.1| RNAse III [Aspergillus fumigatus Af293]
 gi|66846256|gb|EAL86589.1| RNAse III, putative [Aspergillus fumigatus Af293]
 gi|159128228|gb|EDP53343.1| RNAse III, putative [Aspergillus fumigatus A1163]
          Length = 150

 Score = 35.0 bits (79), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 15/137 (10%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSI------SHSYQESYERLEFLGDRILGLLISTL 58
           R   +E  I Y F NRS+L +AL  +        +H   +  + L  +GD +L L+   L
Sbjct: 6   RADVVEDIIHYDFTNRSILYEALRSAGALALTGRAHR-SDGNKDLAQVGDAVLQLI---L 61

Query: 59  LFNHFDS-AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
           + + +++    G ++   +S  S    +QV  +  L S I ++        S    + A 
Sbjct: 62  VMDGYEAKGSRGYINQIVSSTASNPNLAQVGFKAGLESVILIN----PSQASVSPGVMAQ 117

Query: 118 VVESLIAALYLDGGIEV 134
            VE+++ A+YLD  ++V
Sbjct: 118 TVEAILGAVYLDSQMDV 134


>gi|255545990|ref|XP_002514055.1| conserved hypothetical protein [Ricinus communis]
 gi|223547141|gb|EEF48638.1| conserved hypothetical protein [Ricinus communis]
          Length = 361

 Score = 35.0 bits (79), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 3/38 (7%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF--TVVV 193
           K+ LQE+A  K   TP Y+ T + GP H+P F  TV+V
Sbjct: 18  KSRLQEYAQKKGLPTPVYE-TIKEGPSHEPSFRSTVIV 54


>gi|224613100|dbj|BAH24210.1| dsRNA-specific ribonuclease RNaseIII [Onion yellows phytoplasma]
          Length = 157

 Score = 35.0 bits (79), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 4/93 (4%)

Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT 172
           SI AD  E+L  A+YLD G   A             K+  +  D KT+LQE   ++   T
Sbjct: 31  SIIADTFEALFGAIYLDLGYLTAKKVFHNIVLPHLAKT-IYIIDFKTQLQEIVQSE-KKT 88

Query: 173 PEYKVTFRSGPDHDPRFT--VVVEISGLAPAQG 203
            +YK+    GP H   F   V +E + L   +G
Sbjct: 89  IQYKIVQEQGPAHSKNFVAEVYLEKNLLGTGEG 121


>gi|82268346|sp|Q4SS66|TRBP2_TETNG RecName: Full=RISC-loading complex subunit tarbp2
 gi|47222849|emb|CAF96516.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 345

 Score = 35.0 bits (79), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           LQE    K    PEY VT  SGP H   FT+   +       G   SK+ A++ AAA++L
Sbjct: 145 LQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEI-GSGTSKKLAKRNAAAKML 203

Query: 221 KR 222
            R
Sbjct: 204 SR 205


>gi|255954591|ref|XP_002568048.1| Pc21g10130 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589759|emb|CAP95910.1| Pc21g10130 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 208

 Score = 35.0 bits (79), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 24/42 (57%)

Query: 94  ASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
           A  IR   +L     +  T + ADVVESLI A Y+DGGI  A
Sbjct: 95  ALLIRNKLELSTAKRNISTKVLADVVESLIGAAYVDGGIREA 136


>gi|330982803|gb|EGH80906.1| ribonuclease III [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 77

 Score = 35.0 bits (79), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213
           +D KT LQE+  ++    P Y+V    G  H   F V  EI+ L   ++G   S+R AEQ
Sbjct: 1   KDPKTRLQEFLQSRACELPRYEVVDIQGEPHCRTFFVECEINLLNEKSRGQGVSRRIAEQ 60

Query: 214 VAAAEVLKREGI 225
           VAAA  L   G+
Sbjct: 61  VAAAAALIALGV 72


>gi|90704799|dbj|BAE92294.1| similarity to ribonuclease III [Cryptomeria japonica]
          Length = 191

 Score = 35.0 bits (79), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 68/152 (44%), Gaps = 10/152 (6%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L+ +I Y F +++LL  A+TH+S S    ++   L  LG  I+   IS     +  +   
Sbjct: 42  LQTKIRYQFKDQTLLILAITHASYSF---DNNGALNVLGYNIIQAAISLHYVLNNSAIGS 98

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+L  + + L +    S+ A +L L   I+V+  +         SI      +L  A+  
Sbjct: 99  GDLHSKISELSNCTVLSKDAFDLQLHDLIKVAPKINPK----KQSILCGCYRALFGAIGA 154

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTE 160
           D  ++VA    +K+  +R L +    +   T+
Sbjct: 155 DANLDVAK---EKFLIRRKLNAASIMQKHLTQ 183


>gi|332030759|gb|EGI70435.1| Kinesin-like protein KIF20A [Acromyrmex echinatior]
          Length = 1468

 Score = 35.0 bits (79), Expect = 8.9,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 6/86 (6%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +Y TL K       ++ L  +  T +     Y++   R+E L DR+    ++T + N +D
Sbjct: 1323 KYETLVKN------HQELFRRQFTPTPNKDDYKKLQNRIEVLQDRLQKYEVNTKVKNIYD 1376

Query: 65   SAKEGELSVRFNSLVSAETCSQVARE 90
            S  E E+S R       +T S V +E
Sbjct: 1377 STSEEEISARQTKRRGKKTASSVKQE 1402


Searching..................................................done


Results from round 2




>gi|254780940|ref|YP_003065353.1| ribonuclease III [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040617|gb|ACT57413.1| ribonuclease III [Candidatus Liberibacter asiaticus str. psy62]
          Length = 227

 Score =  323 bits (829), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 227/227 (100%), Positives = 227/227 (100%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF
Sbjct: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE
Sbjct: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR
Sbjct: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT
Sbjct: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227


>gi|315122353|ref|YP_004062842.1| ribonuclease III [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313495755|gb|ADR52354.1| ribonuclease III [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 232

 Score =  289 bits (740), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 169/225 (75%), Positives = 200/225 (88%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           +L+ S LE+RIGY F+N+ LL+KALTHSSI HS QE+YERLEFLGDR+LG+LIS LLF++
Sbjct: 8   SLKLSALERRIGYTFSNKYLLKKALTHSSICHSPQENYERLEFLGDRVLGILISKLLFDY 67

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           FDSAKEGELS+RFNSLVSAETCSQVA+EL+L SFI VSSDLR +VC F+  IQADVVESL
Sbjct: 68  FDSAKEGELSIRFNSLVSAETCSQVAKELELDSFIYVSSDLRMEVCKFVKGIQADVVESL 127

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           IAALYLDGGIE A +FV KYWK+R LK+G+FRRDAKTELQEWAHAKF VTP YK+  RSG
Sbjct: 128 IAALYLDGGIESASSFVTKYWKKRVLKNGEFRRDAKTELQEWAHAKFRVTPTYKIMLRSG 187

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           PDHDPRFTV+V++ GL   +G+DCSKR+AEQ+AAAE+L+REGIW+
Sbjct: 188 PDHDPRFTVMVDVLGLYSGKGIDCSKRSAEQMAAAEILRREGIWS 232


>gi|328543513|ref|YP_004303622.1| ribonuclease III [polymorphum gilvum SL003B-26A1]
 gi|326413257|gb|ADZ70320.1| Ribonuclease III [Polymorphum gilvum SL003B-26A1]
          Length = 234

 Score =  286 bits (734), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 111/223 (49%), Positives = 147/223 (65%), Gaps = 3/223 (1%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFD 64
           TLE R+GY+F +++LL +ALTH+S  ++    + SY+RLEFLGDR+LGL ++T+L  HF 
Sbjct: 11  TLEGRLGYSFQDKALLMQALTHASALNAGGAARGSYQRLEFLGDRVLGLAVATMLHRHFP 70

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            A EGEL+ R N +V  ETC+ +A ELDL   +R+S    +      T++ AD+ E++IA
Sbjct: 71  LADEGELARRLNHMVKRETCADIALELDLGEAMRISQSEAQTGGRRKTALLADICEAVIA 130

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A+YLDGG   A  FV + W+ R L      RDAKT LQEWA +K    P Y+VT R GPD
Sbjct: 131 AIYLDGGFPAAEDFVRRLWEPRMLAWSGPLRDAKTTLQEWAQSKGLPAPGYQVTTREGPD 190

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           H P F V V +SG AP +G   SKR AEQ AA  VL+REG+WT
Sbjct: 191 HAPVFVVAVTVSGYAPGEGRGGSKRIAEQNAAEAVLRREGVWT 233


>gi|254469250|ref|ZP_05082655.1| ribonuclease III [Pseudovibrio sp. JE062]
 gi|211961085|gb|EEA96280.1| ribonuclease III [Pseudovibrio sp. JE062]
          Length = 235

 Score =  284 bits (728), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 103/224 (45%), Positives = 145/224 (64%), Gaps = 3/224 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           + LE+RIGY F N+ LL +ALTH+S    + +  +SY+RLEFLGDR+LGL I+T+L  +F
Sbjct: 11  AALEERIGYKFTNKELLVRALTHASALPVAKASLQSYQRLEFLGDRVLGLAIATMLEENF 70

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EGEL+ R N LV  ETC++V++ + +   +RV            T+I AD+ ESLI
Sbjct: 71  PKADEGELARRLNQLVKRETCAEVSKVIGIGQHMRVGEAEAHTGGRTKTAILADMCESLI 130

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           AA+YLD G + A  F+ +Y+ +R +      RDAKT LQEWA +K   TP+Y+   RSGP
Sbjct: 131 AAIYLDSGFDEAENFIKRYFAERMVSYTGPLRDAKTTLQEWAQSKGRPTPQYETISRSGP 190

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           DH P F + V + G+ P + +  SKR AEQ AA  +L+REG+W+
Sbjct: 191 DHAPIFKIRVNVEGVDPGEAVGSSKRIAEQSAAENILRREGVWS 234


>gi|302391792|ref|YP_003827612.1| RNAse III [Acetohalobium arabaticum DSM 5501]
 gi|302203869|gb|ADL12547.1| RNAse III [Acetohalobium arabaticum DSM 5501]
          Length = 234

 Score =  284 bits (727), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 79/227 (34%), Positives = 123/227 (54%), Gaps = 6/227 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58
             +   L+ +I   FA+  LL++ALTH S ++  +    +  ERLEFLGD +L +++S  
Sbjct: 7   KEKLEELQSKIDIYFADLDLLQRALTHKSYANENRDLNLKDNERLEFLGDSVLDIVVSEY 66

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           +FN +    EG+L+    S+VSA T +  ARELDL  ++ +            +SI AD 
Sbjct: 67  MFNRYPDYPEGKLAKMRASVVSAPTLAAKARELDLGRYLLLGHGEEMTGGRKRSSILADA 126

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
            E+L+ ++YLD  +++A  F+ K  K    + ++G+  RD KT LQE    +    PEY 
Sbjct: 127 FEALVGSIYLDQDLDIAEDFIMKLMKVDIESAEAGEHIRDYKTTLQEMIQKRSNARPEYY 186

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V    GPDH   FTV V+ +  +  +G   SK+ A+Q AA   LK+ 
Sbjct: 187 VIEEKGPDHSKEFTVEVKFNDRSLGEGTGSSKKEAQQQAAKNALKKL 233


>gi|224582877|ref|YP_002636675.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|224467404|gb|ACN45234.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
          Length = 245

 Score =  284 bits (727), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 82/226 (36%), Positives = 124/226 (54%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 20  MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKH---NERLEFLGDSILSFVIANALY 76

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 77  HRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTVE 136

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  ++K R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 137 ALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 196

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
              G  HD  FT+  ++SGL  P  G   S+R AEQ AA +VLK+ 
Sbjct: 197 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQVLKKL 242


>gi|62181146|ref|YP_217563.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|62128779|gb|AAX66482.1| RNase III, ds RNA [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322715636|gb|EFZ07207.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 245

 Score =  284 bits (727), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 81/226 (35%), Positives = 124/226 (54%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 20  MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKH---NERLEFLGDSILSFVIANALY 76

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD +E
Sbjct: 77  HRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTME 136

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  ++K R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 137 ALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 196

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
              G  HD  FT+  ++SGL  P  G   S+R AEQ AA +VLK+ 
Sbjct: 197 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQVLKKL 242


>gi|295696065|ref|YP_003589303.1| ribonuclease III [Bacillus tusciae DSM 2912]
 gi|295411667|gb|ADG06159.1| ribonuclease III [Bacillus tusciae DSM 2912]
          Length = 231

 Score =  283 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 80/225 (35%), Positives = 110/225 (48%), Gaps = 4/225 (1%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLL 59
           A ++  LE R+G  F N SLL +A THSS  + ++   E  ERLEFLGD +L LL+S  L
Sbjct: 2   ATKWDELEARLGITFRNASLLRQAFTHSSYRNEHRGDVEDNERLEFLGDAVLELLVSEFL 61

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F  +    EGEL+    ++V   +  + A  L L  +IR+             S+ ADV 
Sbjct: 62  FRAYPRFPEGELTRMRAAIVCEPSLVRFATALGLDQYIRLGRGEEMSGGRRRPSLLADVY 121

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           E+LI A++LD G+E A  F+ +        +      D KT LQE           Y++T
Sbjct: 122 EALIGAIFLDQGLEAAREFLQRMMFPALQREQAPILDDYKTMLQEHVQKVGLGPLTYRIT 181

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              GP H   F   V I G A  +G   SK+ AEQ AA E L + 
Sbjct: 182 DERGPAHHREFVAQVWIGGQAYGEGSGRSKKEAEQHAAREALMKL 226


>gi|227821403|ref|YP_002825373.1| ribonuclease III [Sinorhizobium fredii NGR234]
 gi|259491961|sp|C3M8S4|RNC_RHISN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|227340402|gb|ACP24620.1| ribonuclease III [Sinorhizobium fredii NGR234]
          Length = 239

 Score =  281 bits (719), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 131/226 (57%), Positives = 164/226 (72%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           +SA   + LE  IGY FA +  L++ALTHSS  ++   +Y+RLEFLGDR+LGL ++ LLF
Sbjct: 7   LSAEDRARLETAIGYQFAEKERLDRALTHSSARNARASNYQRLEFLGDRVLGLCVAELLF 66

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELSVR N LVSAE+C++VA EL L  +IR  SD++K     M +++ADVVE
Sbjct: 67  QTFLDANEGELSVRLNQLVSAESCARVADELSLHEYIRTGSDVKKITGKHMMNVRADVVE 126

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           SLIAA+YLDGG+E A  FV ++W  RA  +   RRDAKTELQEWAHAKFG  P Y+   R
Sbjct: 127 SLIAAIYLDGGLEAARRFVLRHWTDRAASADGARRDAKTELQEWAHAKFGAAPRYRTDDR 186

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           SGPDHDPRFTV VE+ G+AP  G D SKR AEQ+AA  +L+REG+W
Sbjct: 187 SGPDHDPRFTVTVEVDGIAPETGTDRSKRGAEQIAAMRLLEREGVW 232


>gi|156975792|ref|YP_001446699.1| ribonuclease III [Vibrio harveyi ATCC BAA-1116]
 gi|269960405|ref|ZP_06174778.1| Ribonuclease 3 [Vibrio harveyi 1DA3]
 gi|189043375|sp|A7MZA8|RNC_VIBHB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|156527386|gb|ABU72472.1| hypothetical protein VIBHAR_03536 [Vibrio harveyi ATCC BAA-1116]
 gi|269834832|gb|EEZ88918.1| Ribonuclease 3 [Vibrio harveyi 1DA3]
          Length = 225

 Score =  281 bits (719), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 80/226 (35%), Positives = 121/226 (53%), Gaps = 7/226 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M++     LE+++GY F +  L+  ALTH S +  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNS-PIDKLERKLGYQFKDAGLINLALTHRSANSKH---NERLEFLGDSILSFVIADDLY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ RE DL  ++++     K       SI AD VE
Sbjct: 57  HRFPKVNEGDMSRMRATLVRGHTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD  IE     V  ++  R  A+K G  ++D KT LQE+   +    P Y VT
Sbjct: 117 AIIGAIYLDSDIEAVRGIVLSWYNSRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVT 176

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
              G  H+  FTV  +++G+  P  G   S+R AEQ AA   L++ 
Sbjct: 177 NIKGEAHNQEFTVECDVAGVDKPVIGKGTSRRKAEQAAAETALEQL 222


>gi|91227852|ref|ZP_01262025.1| ribonuclease III [Vibrio alginolyticus 12G01]
 gi|269965785|ref|ZP_06179882.1| Ribonuclease 3 [Vibrio alginolyticus 40B]
 gi|91188362|gb|EAS74658.1| ribonuclease III [Vibrio alginolyticus 12G01]
 gi|269829653|gb|EEZ83890.1| Ribonuclease 3 [Vibrio alginolyticus 40B]
          Length = 225

 Score =  281 bits (719), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 81/226 (35%), Positives = 123/226 (54%), Gaps = 7/226 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M++     LE+++GY F +  L+  ALTH S +  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNS-PIDKLERKLGYQFQDAGLINLALTHRSANSKH---NERLEFLGDSILSFVIADDLY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ RE DL  ++++     K       SI AD VE
Sbjct: 57  HRFPKVNEGDMSRMRATLVRGHTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD  +EV    V  +++ R  A+K G  ++D KT LQE+   +    P Y VT
Sbjct: 117 AIIGAIYLDSDLEVVRGIVLSWYQSRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVT 176

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
              G  H+  FTV  E++G+  P  G   S+R AEQ AA   L++ 
Sbjct: 177 NIKGEAHNQEFTVECEVAGVDKPVIGKGTSRRKAEQAAAETALEQL 222


>gi|90101642|sp|Q57LD0|RNC_SALCH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
          Length = 226

 Score =  280 bits (718), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 81/226 (35%), Positives = 124/226 (54%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKH---NERLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD +E
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTME 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  ++K R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
              G  HD  FT+  ++SGL  P  G   S+R AEQ AA +VLK+ 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQVLKKL 223


>gi|28899346|ref|NP_798951.1| ribonuclease III [Vibrio parahaemolyticus RIMD 2210633]
 gi|153839958|ref|ZP_01992625.1| ribonuclease III [Vibrio parahaemolyticus AQ3810]
 gi|260365941|ref|ZP_05778431.1| ribonuclease III [Vibrio parahaemolyticus K5030]
 gi|260878963|ref|ZP_05891318.1| ribonuclease III [Vibrio parahaemolyticus AN-5034]
 gi|260898320|ref|ZP_05906816.1| ribonuclease III [Vibrio parahaemolyticus Peru-466]
 gi|31076860|sp|Q87LN9|RNC_VIBPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|28807582|dbj|BAC60835.1| ribonuclease III [Vibrio parahaemolyticus RIMD 2210633]
 gi|149746517|gb|EDM57506.1| ribonuclease III [Vibrio parahaemolyticus AQ3810]
 gi|308085245|gb|EFO34940.1| ribonuclease III [Vibrio parahaemolyticus Peru-466]
 gi|308090440|gb|EFO40135.1| ribonuclease III [Vibrio parahaemolyticus AN-5034]
 gi|308113210|gb|EFO50750.1| ribonuclease III [Vibrio parahaemolyticus K5030]
 gi|328474121|gb|EGF44926.1| ribonuclease III [Vibrio parahaemolyticus 10329]
          Length = 225

 Score =  280 bits (718), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 81/226 (35%), Positives = 122/226 (53%), Gaps = 7/226 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M++     LE+++GY F +  L+  ALTH S +  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNS-PIDKLERKLGYQFKDAGLINLALTHRSANSKH---NERLEFLGDSILSFVIADDLY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ RE DL  ++++     K       SI AD VE
Sbjct: 57  HRFPKVNEGDMSRMRATLVRGHTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD  IE   + V  ++  R  A+K G  ++D KT LQE+   +    P Y VT
Sbjct: 117 AIIGAIYLDSDIEKVRSIVLSWYNSRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVT 176

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
              G  H+  FTV  E++G+  P  G   S+R AEQ AA   L++ 
Sbjct: 177 NIKGEAHNQEFTVECEVAGVDKPVIGKGTSRRKAEQAAAETALEQL 222


>gi|254230524|ref|ZP_04923895.1| ribonuclease III [Vibrio sp. Ex25]
 gi|262393270|ref|YP_003285124.1| ribonuclease III [Vibrio sp. Ex25]
 gi|151936949|gb|EDN55836.1| ribonuclease III [Vibrio sp. Ex25]
 gi|262336864|gb|ACY50659.1| ribonuclease III [Vibrio sp. Ex25]
          Length = 225

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 81/226 (35%), Positives = 122/226 (53%), Gaps = 7/226 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M++     LE+++GY F +  L+  ALTH S +  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNS-PIDKLERKLGYQFQDAGLINLALTHRSANSKH---NERLEFLGDSILSFVIADDLY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ RE DL  ++++     K       SI AD VE
Sbjct: 57  HRFPKVNEGDMSRMRATLVRGHTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD  +EV    V  ++  R  A+K G  ++D KT LQE+   +    P Y VT
Sbjct: 117 AIIGAIYLDSDLEVVRGIVLSWYNSRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVT 176

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
              G  H+  FTV  E++G+  P  G   S+R AEQ AA   L++ 
Sbjct: 177 NIKGEAHNQEFTVECEVAGVDKPVIGKGTSRRKAEQAAAETALEQL 222


>gi|160934422|ref|ZP_02081809.1| hypothetical protein CLOLEP_03295 [Clostridium leptum DSM 753]
 gi|156867095|gb|EDO60467.1| hypothetical protein CLOLEP_03295 [Clostridium leptum DSM 753]
          Length = 237

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 83/224 (37%), Positives = 122/224 (54%), Gaps = 4/224 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFN 61
            +  LE+ +GYAF N  LL+ ALTHSS ++       S ERLEFLGD +L +++S  +F 
Sbjct: 13  DFRRLEENLGYAFQNPKLLKTALTHSSYANEAHNGTRSNERLEFLGDAVLSIVVSDYIFR 72

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     EGEL+    SLV  ++  + +R L++ SF+R+S   +    +  +SI AD  E+
Sbjct: 73  NCPHLPEGELTKMRASLVCEKSLQRFSRVLEIGSFLRLSRGEQNSGGAERSSILADAFEA 132

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           ++AA+YLDGG+E A  FV ++          K  +D KT LQE           Y +   
Sbjct: 133 VLAAIYLDGGMEKAREFVLRFTVPEMENPKPKAFKDYKTALQEIVQQNPEEKLNYVLVGE 192

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           SGPDH+  F V V ++     +G   SK+ AEQ AA E L+  G
Sbjct: 193 SGPDHNKHFVVEVHLNSNVIGKGGGRSKKEAEQQAAREALELMG 236


>gi|163802958|ref|ZP_02196845.1| ribonuclease III [Vibrio sp. AND4]
 gi|159173248|gb|EDP58076.1| ribonuclease III [Vibrio sp. AND4]
          Length = 226

 Score =  280 bits (716), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 80/226 (35%), Positives = 121/226 (53%), Gaps = 7/226 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M++     LE+++GY F +  L+  ALTH S +  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNS-PIEKLERKLGYQFKDAGLINLALTHRSANSKH---NERLEFLGDSILSFVIADELY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ RE DL  ++++     K       SI AD VE
Sbjct: 57  HRFPKVNEGDMSRMRATLVRGHTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD  IE     V  ++  R  A+K G  ++D KT LQE+   +    P Y VT
Sbjct: 117 AIIGAIYLDSDIEAVRGIVLSWYHSRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVT 176

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
              G  H+  FTV  +++G+  P  G   S+R AEQ AA   L++ 
Sbjct: 177 NIKGEAHNQEFTVECDVAGVDKPVIGKGTSRRKAEQAAAETALEQL 222


>gi|260899641|ref|ZP_05908036.1| ribonuclease III [Vibrio parahaemolyticus AQ4037]
 gi|308110559|gb|EFO48099.1| ribonuclease III [Vibrio parahaemolyticus AQ4037]
          Length = 225

 Score =  280 bits (716), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 81/226 (35%), Positives = 122/226 (53%), Gaps = 7/226 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M++     LE+++GY F +  L+  ALTH S +  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNS-PIDKLERKLGYQFKDAGLINLALTHRSANSKH---NERLEFLGDSILSFVIADDLY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ RE DL  ++++     K       SI AD VE
Sbjct: 57  HRFPKVNEGDMSRMRATLVRGHTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD  IE   + V  ++  R  A+K G  ++D KT LQE+   +    P Y VT
Sbjct: 117 AIIGAIYLDSDIEKVRSIVLSWYYSRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVT 176

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
              G  H+  FTV  E++G+  P  G   S+R AEQ AA   L++ 
Sbjct: 177 NIKGEAHNQEFTVECEVAGVDKPVIGKGTSRRKAEQAAAETALEQL 222


>gi|291530279|emb|CBK95864.1| RNAse III [Eubacterium siraeum 70/3]
          Length = 226

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 84/224 (37%), Positives = 118/224 (52%), Gaps = 3/224 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           + LE+ IGY F N  LL++ALTHSS ++  +  S ERLEFLGD +L +++S  LF +  +
Sbjct: 2   TELEQIIGYTFKNPELLKEALTHSSYTNGKHLRSNERLEFLGDSVLSIVVSEHLFENLTN 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+L+    S+V        AR++DL  +I +             SI AD  E+LIAA
Sbjct: 62  LPEGQLTKIRASVVCENALYPFARKIDLGKYIFLGKGEEHTGGRDRHSILADAFEALIAA 121

Query: 126 LYLDGGIEVAGTFVDKYWKQRA-LKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YLDGG E A  F+  +      L +GKF   D KT LQE           Y+++  SG 
Sbjct: 122 IYLDGGFEAARNFILPFIPPLDKLSTGKFLLGDYKTVLQEIIQQNPEERVTYEISDESGQ 181

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
            H+ +FT  V ++G     G   SK+ AEQ AA E +   G  T
Sbjct: 182 AHNKQFTANVLLNGQIIGTGKGKSKKEAEQSAAKEAISLMGYET 225


>gi|291542641|emb|CBL15751.1| RNAse III [Ruminococcus bromii L2-63]
          Length = 225

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 84/223 (37%), Positives = 123/223 (55%), Gaps = 5/223 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62
             L+KRIGY F N  LL +ALTHSS ++ ++    +  ERLEFLGD +L +++S  +F H
Sbjct: 2   EDLQKRIGYTFKNTDLLTEALTHSSYANEHKAKHIKYNERLEFLGDAVLSIVVSDYIFKH 61

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
                EGEL+    SLV  +T  + A++++L  ++ +S   R +  +   SI +D  E+L
Sbjct: 62  CPELPEGELTKLRASLVCEKTLFEFAKQIELGKYLVLSKGERNNGGAERPSILSDAFEAL 121

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRS 181
           IAA+Y+DGGI+ A   +  +       S K +  D KT LQE      G   EY +   S
Sbjct: 122 IAAIYIDGGIDPASKHILNFVIPAIKNSKKKKLNDYKTALQEIIQKNPGEQLEYVLVGES 181

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GPDH+  F V V ++     +G   SK+ AEQ AA E L+  G
Sbjct: 182 GPDHNKHFVVEVHLNSNVIGKGGGRSKKEAEQQAAREALELMG 224


>gi|118587961|ref|ZP_01545371.1| Ribonuclease III [Stappia aggregata IAM 12614]
 gi|118439583|gb|EAV46214.1| Ribonuclease III [Stappia aggregata IAM 12614]
          Length = 236

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 108/224 (48%), Positives = 143/224 (63%), Gaps = 3/224 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            S L+  + Y F +  LL  ALTH+S    S +   SY+RLEFLGDR+LGL+I+++L  H
Sbjct: 11  ISALKNALQYEFRDLELLRVALTHASALPPSETVAGSYQRLEFLGDRVLGLVIASMLHKH 70

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F  A EGEL+ RFN +V  ETC+++A+EL +   +R+     +      T++ AD+ ES+
Sbjct: 71  FPRADEGELARRFNHMVKRETCAEIAQELGVGDAMRIGLAEAQTGGRKKTALLADICESV 130

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           IAA+YLDGG E A +F+ + W+ R L      RDAKT LQEWA +K   TP Y VT R G
Sbjct: 131 IAAIYLDGGFEAAESFITRLWEPRMLSWSGPLRDAKTTLQEWAQSKSLPTPRYDVTSRDG 190

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           PDH P FTV V + GL P +G   SKR AEQ AA  VL+REG+W
Sbjct: 191 PDHAPNFTVSVTVQGLPPGEGKGGSKRIAEQNAAEAVLRREGVW 234


>gi|260771275|ref|ZP_05880202.1| ribonuclease III [Vibrio furnissii CIP 102972]
 gi|260613872|gb|EEX39064.1| ribonuclease III [Vibrio furnissii CIP 102972]
          Length = 225

 Score =  279 bits (714), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 85/226 (37%), Positives = 124/226 (54%), Gaps = 7/226 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M++   S LE ++GY F N  L+  ALTH S +  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNS-PISRLETKLGYQFNNAELISLALTHRSANGKH---NERLEFLGDSILSFVIADDLY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ RE DL  ++++     K       SI AD VE
Sbjct: 57  HRFPKVNEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD  IEVA   V  +++ R  A+K G  ++D KT LQE+   +    P Y VT
Sbjct: 117 AIIGAIYLDSDIEVARATVLSWYQSRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVT 176

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKRE 223
              G  H+  FTV  +I+G+  P  G   S+R AEQ AA   L++ 
Sbjct: 177 NIKGEAHNQEFTVACDIAGIGAPVIGKGTSRRKAEQAAAETALEQL 222


>gi|167751472|ref|ZP_02423599.1| hypothetical protein EUBSIR_02468 [Eubacterium siraeum DSM 15702]
 gi|167655280|gb|EDR99409.1| hypothetical protein EUBSIR_02468 [Eubacterium siraeum DSM 15702]
 gi|291557094|emb|CBL34211.1| RNAse III [Eubacterium siraeum V10Sc8a]
          Length = 226

 Score =  279 bits (714), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 84/224 (37%), Positives = 119/224 (53%), Gaps = 3/224 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           + LE+ IGY F N  LL++ALTHSS ++  +  S ERLEFLGD +L +++S  LF +  +
Sbjct: 2   TELEQIIGYTFKNPELLKEALTHSSYTNGKHLRSNERLEFLGDSVLSIVVSEHLFENLTN 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+L+    S+V        AR++DL  +I +             SI AD  E+LIAA
Sbjct: 62  LPEGQLTKIRASVVCENALYPFARKIDLGKYIFLGKGEEHTGGRDRHSILADAFEALIAA 121

Query: 126 LYLDGGIEVAGTFVDKYWKQRA-LKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YLDGG E A +F+  +      L +GKF   D KT LQE           Y+++  SG 
Sbjct: 122 IYLDGGFEAARSFILPFIPPLDKLSTGKFLLGDYKTVLQEIIQQNPEERVTYEISDESGQ 181

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
            H+ +FT  V ++G     G   SK+ AEQ AA E +   G  T
Sbjct: 182 AHNKQFTANVLLNGQIIGTGKGKSKKEAEQSAAKEAISLMGYET 225


>gi|84390104|ref|ZP_00991366.1| ribonuclease III [Vibrio splendidus 12B01]
 gi|86146359|ref|ZP_01064683.1| ribonuclease III [Vibrio sp. MED222]
 gi|218710569|ref|YP_002418190.1| ribonuclease III [Vibrio splendidus LGP32]
 gi|254807909|sp|B7VK79|RNC_VIBSL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|84376758|gb|EAP93633.1| ribonuclease III [Vibrio splendidus 12B01]
 gi|85835838|gb|EAQ53972.1| ribonuclease III [Vibrio sp. MED222]
 gi|218323588|emb|CAV19828.1| Ribonuclease III [Vibrio splendidus LGP32]
          Length = 225

 Score =  278 bits (712), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 121/226 (53%), Gaps = 7/226 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M++     LE++IGY F +  L+  ALTH S +  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNS-PIDKLERKIGYQFNDADLIHLALTHRSAAGKH---NERLEFLGDSILSFVIADDLY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ RE +L  ++++     K       SI AD VE
Sbjct: 57  HRFPKVNEGDMSRMRATLVRGHTLAELGREFELGDYLKLGPGELKSGGFRRDSILADAVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD   EV    +  +++ R   ++ G  ++D KT LQE+   +    P Y VT
Sbjct: 117 AIIGAVYLDSDTEVVRRIILSWYQSRLESIQPGVSQKDPKTRLQEFLQGRRNPLPVYTVT 176

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
              G  H+  FTV  E++G+  P  G   S+R AEQ AA   L++ 
Sbjct: 177 NIKGEAHNQEFTVECEVAGVDKPVIGKGTSRRKAEQAAAETALEQL 222


>gi|237807623|ref|YP_002892063.1| ribonuclease III [Tolumonas auensis DSM 9187]
 gi|237499884|gb|ACQ92477.1| ribonuclease III [Tolumonas auensis DSM 9187]
          Length = 223

 Score =  278 bits (711), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 80/226 (35%), Positives = 126/226 (55%), Gaps = 7/226 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+  + S LE+++GY F N+ LL +A+TH S    +    ERLEFLGD IL L+I+ +L+
Sbjct: 1   MND-KLSRLEQKLGYPFQNKDLLVRAITHRSAGSRH---NERLEFLGDSILSLVIAEVLY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F +  EG++S    +LV  +T +++ARE  L  ++ +     K       SI AD VE
Sbjct: 57  HRFPNVSEGDMSRMRATLVREKTLAELAREFALGDYLILGPGELKSGGYRRESILADTVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI A+YLD  ++   T +  ++ +R   ++ G  ++D KT LQE+   +    P Y VT
Sbjct: 117 ALIGAIYLDSDLDGIRTLMLNWYNERLDSIRPGVEQKDPKTRLQEFLQGRRRPLPTYAVT 176

Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKRE 223
              G  H+ +FTV   I  +  A  G+  S+R AEQ AA   L++ 
Sbjct: 177 DVKGEAHNQQFTVECAIDDIEAAFVGVGSSRRKAEQAAAERALEQL 222


>gi|15964825|ref|NP_385178.1| ribonuclease III [Sinorhizobium meliloti 1021]
 gi|307300895|ref|ZP_07580664.1| ribonuclease III [Sinorhizobium meliloti BL225C]
 gi|307320712|ref|ZP_07600124.1| ribonuclease III [Sinorhizobium meliloti AK83]
 gi|22654067|sp|Q92R47|RNC_RHIME RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|15074004|emb|CAC45651.1| Probable ribonuclease III [Sinorhizobium meliloti 1021]
 gi|306893639|gb|EFN24413.1| ribonuclease III [Sinorhizobium meliloti AK83]
 gi|306903850|gb|EFN34436.1| ribonuclease III [Sinorhizobium meliloti BL225C]
          Length = 238

 Score =  278 bits (711), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 131/226 (57%), Positives = 165/226 (73%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           ++    + LE  IGY FA +  L++ALTHSS       +Y+RLEFLGDR+LGL ++ LLF
Sbjct: 6   LNTEDRARLEAAIGYRFAEKERLDRALTHSSARSGRAINYQRLEFLGDRVLGLCVAELLF 65

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELSVR N LVSAE+C++VA EL L  FIR  SD++K     M +++ADVVE
Sbjct: 66  QTFTDANEGELSVRLNQLVSAESCAKVADELSLHEFIRTGSDVKKITGKHMMNVRADVVE 125

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           SLIAA+YLDGG++ A  FV ++W  RA  +   RRDAKTELQEWAHAKFGV P+Y+   R
Sbjct: 126 SLIAAIYLDGGLDAARRFVLEHWTHRAASADGARRDAKTELQEWAHAKFGVAPKYRTDDR 185

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           SGPDHDPRFTV VE+ G+AP  G+D SKR AEQVAA ++L+REG+W
Sbjct: 186 SGPDHDPRFTVTVEVDGIAPETGVDRSKRGAEQVAAMKLLEREGVW 231


>gi|148981907|ref|ZP_01816565.1| ribonuclease III [Vibrionales bacterium SWAT-3]
 gi|145960708|gb|EDK26050.1| ribonuclease III [Vibrionales bacterium SWAT-3]
          Length = 225

 Score =  277 bits (710), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 121/226 (53%), Gaps = 7/226 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M++     LE++IGY F +  L+  ALTH S +  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNS-PIDKLERKIGYQFNDADLIHLALTHRSAAGKH---NERLEFLGDSILSFVIADDLY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ RE +L  ++++     K       SI AD VE
Sbjct: 57  HRFPKVNEGDMSRMRATLVRGHTLAELGREFELGDYLKLGPGELKSGGFRRDSILADAVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD   E     +  +++ R  A++ G  ++D KT LQE+   +    P Y VT
Sbjct: 117 AIIGAIYLDSDTETVRGIILSWYQSRLEAIQPGVSQKDPKTRLQEFLQGRRNPLPVYTVT 176

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
              G  H+  FTV  E++G+  P  G   S+R AEQ AA   L++ 
Sbjct: 177 NIKGEAHNQEFTVECEVAGVDKPVIGKGTSRRKAEQAAAETALEQL 222


>gi|150395906|ref|YP_001326373.1| ribonuclease III [Sinorhizobium medicae WSM419]
 gi|189043356|sp|A6U7A8|RNC_SINMW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|150027421|gb|ABR59538.1| Ribonuclease III [Sinorhizobium medicae WSM419]
          Length = 238

 Score =  277 bits (710), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 132/226 (58%), Positives = 165/226 (73%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           ++A   + LE  IGY FA +  L++ALTHSS       +Y+RLEFLGDRILGL ++ LLF
Sbjct: 6   LNAEDRARLEAAIGYQFAEKERLDRALTHSSARSGRAINYQRLEFLGDRILGLCVAELLF 65

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELSVR N LVSAE+C++VA EL L  FIR  SD++K     M +++ADVVE
Sbjct: 66  QTFSDANEGELSVRLNQLVSAESCAKVADELSLHEFIRTGSDVKKITGKHMMNVRADVVE 125

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           SLIAA+YLDGG+E A  FV ++W  RA  +   RRDAKTELQEWAHA+FGV P+Y+   R
Sbjct: 126 SLIAAIYLDGGLEAARRFVLEHWTHRAASADGARRDAKTELQEWAHARFGVAPKYRTEDR 185

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           SGPDHDPRFTV VE+ G+ P  G+D SKR AEQVAA ++L+REG+W
Sbjct: 186 SGPDHDPRFTVTVEVDGIDPETGVDRSKRGAEQVAAMKLLEREGVW 231


>gi|167463674|ref|ZP_02328763.1| ribonuclease III [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322382556|ref|ZP_08056436.1| ribonuclease III-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321153472|gb|EFX45877.1| ribonuclease III-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 287

 Score =  276 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 111/226 (49%), Gaps = 5/226 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
               L+ RIG  F N  LL +A THSS  + ++    +  ERLEFLGD +L L++S  L+
Sbjct: 58  DLKELQARIGITFNNVDLLRQAFTHSSYVNEHRITNHKDNERLEFLGDAVLELMVSEHLY 117

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             +    EGEL+    S+V   +    A  L+  S++ +             ++ AD+ E
Sbjct: 118 FTYPRRAEGELTKLRASIVCEPSLVNFAERLNFGSYVLLGKGEEMTGGRTRPALLADLFE 177

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTF 179
           S I ALYLD G+E    F+ K+        GK    D KT+LQE+       T EY++  
Sbjct: 178 SFIGALYLDQGLEPVRDFLIKHVFPHISNEGKLLVVDYKTQLQEYVQHHNLGTLEYRIVE 237

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
             GP H+  F   V++ G    +G+  SK+ AEQ AA++   +  +
Sbjct: 238 ERGPAHEREFVAEVQMDGKILGKGVGRSKKEAEQQAASKASVKLNV 283


>gi|20807916|ref|NP_623087.1| dsRNA-specific ribonuclease [Thermoanaerobacter tengcongensis MB4]
 gi|22654052|sp|Q8R9W3|RNC_THETN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|20516484|gb|AAM24691.1| dsRNA-specific ribonuclease [Thermoanaerobacter tengcongensis MB4]
          Length = 228

 Score =  276 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 81/226 (35%), Positives = 122/226 (53%), Gaps = 5/226 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNH 62
            + LE++I Y F +++LL +ALTHSS +H  +    S ERLEFLGD +L L+IS  L+ +
Sbjct: 2   LTYLEQKINYEFKDKTLLLEALTHSSWAHEGKNEKVSNERLEFLGDSVLSLVISEYLYKN 61

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
               +EG LS     +V   + ++ AR+++L SF+R+             SI AD +E+L
Sbjct: 62  RKDLEEGSLSKYRAEIVCEPSLARCARKIELGSFLRMGKGEEISGGRDRDSILADAMEAL 121

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +AA+YLDGG+E     +   +K+   +   G   RD KT LQE   +       Y++   
Sbjct: 122 LAAVYLDGGLEAVRRVILDLFKEIIDEVLKGIIYRDYKTRLQEVVQSMEVGKITYELVEE 181

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
            GPDH+  F   V+I  +    G   SK+ +EQ AA E L + GI 
Sbjct: 182 IGPDHNKTFVTQVKIGDVVLGIGQGKSKKESEQAAAMEALSKLGIL 227


>gi|220928138|ref|YP_002505047.1| ribonuclease III [Clostridium cellulolyticum H10]
 gi|219998466|gb|ACL75067.1| ribonuclease III [Clostridium cellulolyticum H10]
          Length = 236

 Score =  276 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 85/233 (36%), Positives = 121/233 (51%), Gaps = 10/233 (4%)

Query: 1   MSALRY----STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILG 52
           M+ +RY    S LE  IGY F N+ ++  A+THSS ++  +    +  ERLEFLGD +LG
Sbjct: 1   MAEIRYDNRISELEDIIGYTFKNKDIIFAAVTHSSYANEKKSRKLKYNERLEFLGDSVLG 60

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
           L IS  LF    +  EGELSV    +V   + SQ A ++ L  ++ +             
Sbjct: 61  LTISEYLFQKKPNLPEGELSVTRAKIVCENSLSQCATDIGLGKYLLLGKGEELSGGREKI 120

Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFG 170
           S+ +D  E+LI ALY+DGG E A +F+ +Y  +  ++   GK   D KT+LQE       
Sbjct: 121 SLLSDAFEALIGALYIDGGFETAKSFIYRYMDKIIKSCIEGKLFYDYKTQLQELVQQNGE 180

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               Y VT + GPDH+  F   V+I+G    +G   SK+ AEQ AA   L   
Sbjct: 181 QQITYSVTDQFGPDHNKTFITEVKINGAIQGRGKGHSKKEAEQNAAKNALNNL 233


>gi|170749855|ref|YP_001756115.1| ribonuclease III [Methylobacterium radiotolerans JCM 2831]
 gi|170656377|gb|ACB25432.1| Ribonuclease III [Methylobacterium radiotolerans JCM 2831]
          Length = 259

 Score =  275 bits (704), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 90/220 (40%), Positives = 131/220 (59%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            + LE+RIG++F ++ LL +ALTH+S +     SY+RLEFLGDR+LGL ++  L+  F  
Sbjct: 28  LTALEERIGHSFGDQDLLTRALTHTSKASGRGGSYQRLEFLGDRVLGLAVADRLYGAFPE 87

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A EG+LS R  +LV  ETC+ VA   ++   + +             +I ADV E+++ A
Sbjct: 88  ADEGDLSRRLAALVRRETCAAVAASWEVGPHLILGQGEVMGGGRRNQTILADVCEAILGA 147

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           +YLD G + A   V+ +++     +    RDAK+ LQEWA  +    P Y V  R+GPDH
Sbjct: 148 IYLDAGFDAARAVVETHFRPGEPTAAARGRDAKSALQEWAMGRSLPIPTYAVVERTGPDH 207

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            PRF + V++ GL P  G   SKR AEQ AA  +++REGI
Sbjct: 208 APRFRIAVQVEGLEPGLGDGTSKRIAEQAAARALMEREGI 247


>gi|225019245|ref|ZP_03708437.1| hypothetical protein CLOSTMETH_03198 [Clostridium methylpentosum
           DSM 5476]
 gi|224947876|gb|EEG29085.1| hypothetical protein CLOSTMETH_03198 [Clostridium methylpentosum
           DSM 5476]
          Length = 228

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 80/223 (35%), Positives = 113/223 (50%), Gaps = 5/223 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTLLFNH 62
              EK IGY F N+ LLE+ALTHSS ++     + ++ ERLEFLGD ++ L+I+  LF +
Sbjct: 2   KNFEKTIGYTFHNQKLLEQALTHSSFTNETGRHHHKNNERLEFLGDSVVSLIIANHLFVN 61

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EGEL+    SLV   + ++ A  +DL + + +             S   D  E+L
Sbjct: 62  FPDMPEGELTKLRASLVCDRSLAEFAGRIDLGNQLIMGKGEEHSGGRQRRSNLEDAFEAL 121

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A+YLDGG+E A +FV  +  +   L S     D KT LQE           Y +   S
Sbjct: 122 VGAIYLDGGLEAARSFVLGFIPKTLDLNSISRVTDYKTALQEIIQKNPEEKLSYVLVSES 181

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GPDHD  F   V ++      G   SK+ AEQ AA + L+  G
Sbjct: 182 GPDHDKMFEAEVHLNSNVIGTGSGKSKKQAEQNAAKQALELMG 224


>gi|258622345|ref|ZP_05717370.1| Ribonuclease 3 [Vibrio mimicus VM573]
 gi|258626729|ref|ZP_05721551.1| Ribonuclease 3 [Vibrio mimicus VM603]
 gi|258580985|gb|EEW05912.1| Ribonuclease 3 [Vibrio mimicus VM603]
 gi|258585361|gb|EEW10085.1| Ribonuclease 3 [Vibrio mimicus VM573]
          Length = 225

 Score =  275 bits (703), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 78/220 (35%), Positives = 117/220 (53%), Gaps = 6/220 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L  ++GY F    LL  ALTH S +  +    ERLEFLGD IL  +I+  L++ F   
Sbjct: 6   NKLTSKLGYTFKEIELLNLALTHRSANGKH---NERLEFLGDSILSFVIADELYHRFPKV 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG++S    +LV   T +++ RE DL  ++++     K       SI AD VE++I A+
Sbjct: 63  NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 122

Query: 127 YLDGGIEVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD  +E A   V +++  +   +K G  ++D KT LQE+   +    P Y VT   G  
Sbjct: 123 YLDSDLETARRIVLEWYHCRLEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 182

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
           H+  FTV  E++G+  P  G   S+R AEQ AA   L++ 
Sbjct: 183 HNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQL 222


>gi|262404774|ref|ZP_06081329.1| ribonuclease III [Vibrio sp. RC586]
 gi|262349806|gb|EEY98944.1| ribonuclease III [Vibrio sp. RC586]
          Length = 225

 Score =  274 bits (702), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 79/220 (35%), Positives = 117/220 (53%), Gaps = 6/220 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L  ++GY F    LL  ALTH S +  +    ERLEFLGD IL  +I+  L+  F   
Sbjct: 6   NKLTSKLGYTFKEIELLNLALTHRSANGKH---NERLEFLGDSILSFVIADELYRRFPKV 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG++S    +LV   T +++ RE DL  ++++     K       SI AD VE++I A+
Sbjct: 63  NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 122

Query: 127 YLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD  +E A + V +++  R   +K G  ++D KT LQE+   +    P Y VT   G  
Sbjct: 123 YLDSDLETARSIVLEWYHGRLEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 182

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
           H+  FTV  E++G+  P  G   S+R AEQ AA   L++ 
Sbjct: 183 HNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQL 222


>gi|317131320|ref|YP_004090634.1| ribonuclease III [Ethanoligenens harbinense YUAN-3]
 gi|315469299|gb|ADU25903.1| ribonuclease III [Ethanoligenens harbinense YUAN-3]
          Length = 226

 Score =  274 bits (702), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 89/226 (39%), Positives = 125/226 (55%), Gaps = 9/226 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
              LEK +GY FA++SLLE ALTHSS ++  ++    S ERLEFLGD +LG++ +  L+ 
Sbjct: 2   LEELEKNLGYTFADKSLLENALTHSSYANEMKKHSCGSNERLEFLGDAVLGIISAEYLYF 61

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           H     EGEL+    S+V   +    AR ++L  ++R+            +SI AD  E+
Sbjct: 62  HHTRVPEGELTRLRASMVCERSLQGFARTVELGRWLRLGRGEENTGGRERSSILADAFEA 121

Query: 122 LIAALYLDGGIEVAGTFVDKY---WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +IAA+Y+DGG   A  FV ++   +    L++G  RRD KTELQE      G   EY + 
Sbjct: 122 VIAAIYIDGGFPAAKRFVTRFADSFFAAHLENG--RRDYKTELQEIVQKNHGEKLEYVLV 179

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             SGPDHD +F V V ++      G   SK+ AEQ+AA E L   G
Sbjct: 180 GESGPDHDKQFLVEVHLNNNCIGAGRGGSKKEAEQMAAREALSLMG 225


>gi|121728984|ref|ZP_01681988.1| ribonuclease III [Vibrio cholerae V52]
 gi|147674970|ref|YP_001217963.1| ribonuclease III [Vibrio cholerae O395]
 gi|153214513|ref|ZP_01949422.1| ribonuclease III [Vibrio cholerae 1587]
 gi|153803086|ref|ZP_01957672.1| ribonuclease III [Vibrio cholerae MZO-3]
 gi|153826905|ref|ZP_01979572.1| ribonuclease III [Vibrio cholerae MZO-2]
 gi|153830879|ref|ZP_01983546.1| ribonuclease III [Vibrio cholerae 623-39]
 gi|229514087|ref|ZP_04403549.1| ribonuclease III [Vibrio cholerae TMA 21]
 gi|229521288|ref|ZP_04410708.1| ribonuclease III [Vibrio cholerae TM 11079-80]
 gi|229524448|ref|ZP_04413853.1| ribonuclease III [Vibrio cholerae bv. albensis VL426]
 gi|229527069|ref|ZP_04416464.1| ribonuclease III [Vibrio cholerae 12129(1)]
 gi|254226246|ref|ZP_04919839.1| ribonuclease III [Vibrio cholerae V51]
 gi|254291661|ref|ZP_04962449.1| ribonuclease III [Vibrio cholerae AM-19226]
 gi|297581085|ref|ZP_06943010.1| ribonuclease III [Vibrio cholerae RC385]
 gi|189043374|sp|A5F5H8|RNC_VIBC3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|121628750|gb|EAX61217.1| ribonuclease III [Vibrio cholerae V52]
 gi|124115315|gb|EAY34135.1| ribonuclease III [Vibrio cholerae 1587]
 gi|124121368|gb|EAY40111.1| ribonuclease III [Vibrio cholerae MZO-3]
 gi|125621219|gb|EAZ49560.1| ribonuclease III [Vibrio cholerae V51]
 gi|146316853|gb|ABQ21392.1| ribonuclease III [Vibrio cholerae O395]
 gi|148873648|gb|EDL71783.1| ribonuclease III [Vibrio cholerae 623-39]
 gi|149739268|gb|EDM53530.1| ribonuclease III [Vibrio cholerae MZO-2]
 gi|150422433|gb|EDN14392.1| ribonuclease III [Vibrio cholerae AM-19226]
 gi|227014353|gb|ACP10563.1| ribonuclease III [Vibrio cholerae O395]
 gi|229335466|gb|EEO00948.1| ribonuclease III [Vibrio cholerae 12129(1)]
 gi|229338029|gb|EEO03046.1| ribonuclease III [Vibrio cholerae bv. albensis VL426]
 gi|229341820|gb|EEO06822.1| ribonuclease III [Vibrio cholerae TM 11079-80]
 gi|229349268|gb|EEO14225.1| ribonuclease III [Vibrio cholerae TMA 21]
 gi|297534911|gb|EFH73747.1| ribonuclease III [Vibrio cholerae RC385]
          Length = 225

 Score =  274 bits (701), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 79/220 (35%), Positives = 117/220 (53%), Gaps = 6/220 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L  ++GY F    LL  ALTH S +  +    ERLEFLGD IL  +I+  L+  F   
Sbjct: 6   NKLTSKLGYTFKETELLNLALTHRSANGKH---NERLEFLGDSILSFVIADELYRRFPKV 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG++S    +LV   T +++ RE DL  ++++     K       SI AD VE++I A+
Sbjct: 63  NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 122

Query: 127 YLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD  +E A   V ++++ R   +K G  ++D KT LQE+   +    P Y VT   G  
Sbjct: 123 YLDSDLETARRIVLEWYQCRLEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 182

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
           H+  FTV  E++G+  P  G   S+R AEQ AA   L++ 
Sbjct: 183 HNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQL 222


>gi|307946585|ref|ZP_07661920.1| ribonuclease III [Roseibium sp. TrichSKD4]
 gi|307770249|gb|EFO29475.1| ribonuclease III [Roseibium sp. TrichSKD4]
          Length = 235

 Score =  274 bits (701), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 103/225 (45%), Positives = 144/225 (64%), Gaps = 3/225 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNH 62
              L +R+ Y F +  L+ KALTH+S     +   +SY+RLEFLGDR+LGL+++T+L  +
Sbjct: 10  LRQLSERLHYTFKDEKLIRKALTHASALEPGEGDDQSYQRLEFLGDRVLGLVVATMLHKN 69

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F  A EGEL+ RFN +V  ETC+++A+EL+L   +R+     +      T++ AD+ E++
Sbjct: 70  FPKADEGELARRFNHMVKRETCAEIAQELNLGDAMRIGHSEAQTGGRKKTALLADICEAV 129

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           IAA+YLDGG + A  F+ ++WK+R L      RDAKT LQEWA +K   TP Y+V  R G
Sbjct: 130 IAAIYLDGGFDAATAFIQRFWKKRMLSWTGPLRDAKTTLQEWAQSKSLPTPFYEVISRDG 189

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           PDH P F V V + GL   +G   SKR AEQ AA  VL+REG+W 
Sbjct: 190 PDHAPIFVVAVAVKGLENGEGKGGSKRLAEQNAAEAVLRREGVWN 234


>gi|326203626|ref|ZP_08193490.1| ribonuclease III [Clostridium papyrosolvens DSM 2782]
 gi|325986446|gb|EGD47278.1| ribonuclease III [Clostridium papyrosolvens DSM 2782]
          Length = 236

 Score =  274 bits (701), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 86/225 (38%), Positives = 119/225 (52%), Gaps = 6/225 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           R S LE  IG+ F N+ ++  A+THSS ++  +    +  ERLEFLGD +LGL+IS  LF
Sbjct: 9   RISELENIIGHNFNNKDIIFAAITHSSYANEKKAKKLKYNERLEFLGDSVLGLVISEYLF 68

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
               +  EGELSV    +V   + SQ A ++ L  ++ +             S+ +D  E
Sbjct: 69  QKKPNLPEGELSVTRAKIVCENSLSQCATDISLGKYLLLGKGEELSGGREKISLLSDAFE 128

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI ALY+DGG E A  FV KY  +  R+   GK   D KT+LQE           Y VT
Sbjct: 129 ALIGALYIDGGFETAKGFVHKYMDKIIRSCIEGKLFYDYKTQLQELVQQNGEQQISYSVT 188

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            + GPDH+  F   V+I+G+   QG   SK+ AEQ AA + L   
Sbjct: 189 DQFGPDHNKTFVTEVKINGVTQGQGKGHSKKEAEQNAAKDALNNL 233


>gi|323705471|ref|ZP_08117046.1| ribonuclease III [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535373|gb|EGB25149.1| ribonuclease III [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 232

 Score =  273 bits (700), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 80/226 (35%), Positives = 120/226 (53%), Gaps = 5/226 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFN 61
           RY  LEK +GY F N+ LL+ ALTHSS ++  +    S ERLEFLGD +L ++IS  L+ 
Sbjct: 6   RYENLEKNMGYTFNNKKLLKNALTHSSWANESKNFLSSNERLEFLGDSVLSIVISEYLYK 65

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +    +EG LS     +V   + ++ ARE+D+  ++ +             SI AD +E+
Sbjct: 66  NRTDLEEGYLSKYRAEIVCEPSLARCAREIDIGKYLNIGRGEEMTGGRNRDSILADAMEA 125

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           LIAA+YLD  ++     V + +++    + SG   RD KT+LQE           YK+  
Sbjct: 126 LIAAVYLDSDLKTVSEVVLRLFEKIINEVLSGLIYRDYKTKLQEVTQKMGSERVIYKLID 185

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
             GPDH+  F + V +      +G   SK+ AEQ AA E L + G+
Sbjct: 186 EYGPDHNKMFVIEVFVGENRLGRGKGRSKKEAEQYAAMEALSKMGL 231


>gi|91977122|ref|YP_569781.1| ribonuclease III [Rhodopseudomonas palustris BisB5]
 gi|91683578|gb|ABE39880.1| RNAse III [Rhodopseudomonas palustris BisB5]
          Length = 271

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 103/224 (45%), Positives = 141/224 (62%), Gaps = 3/224 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHF 63
             +E+RIG+ FA+ SLL  ALTH S    + +  +SY+RLEFLGD +LGL++S +L+  F
Sbjct: 43  EVIEQRIGHTFADPSLLNTALTHVSALKSARNRADSYQRLEFLGDHVLGLVVSDMLYRAF 102

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            +A EGELS R   LV  ETC+ +AR LDL   I++ +           S+  D+ E++I
Sbjct: 103 PNADEGELSKRLADLVRKETCADIARSLDLLDGIKLGTVGAGAGARLRKSVLGDICEAVI 162

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            A++LDGG   A  FV + W +R  K  +  RD KT LQEWA  K   TP Y+   R+GP
Sbjct: 163 GAVFLDGGYPAAADFVQRNWTERMRKPARSLRDPKTVLQEWAQGKGLPTPVYREVERTGP 222

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
            HDP+F V V + GL PA+G+  SKRAAE+VAA+ +L REG+ T
Sbjct: 223 HHDPQFRVAVSLPGLEPAEGVGGSKRAAEKVAASVMLAREGVST 266


>gi|197303071|ref|ZP_03168119.1| hypothetical protein RUMLAC_01798 [Ruminococcus lactaris ATCC
           29176]
 gi|197297926|gb|EDY32478.1| hypothetical protein RUMLAC_01798 [Ruminococcus lactaris ATCC
           29176]
          Length = 229

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 82/220 (37%), Positives = 113/220 (51%), Gaps = 5/220 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           R   LEK+IGY F N  LLE+A+ HSS ++          ERLEFLGD +L L+ S  LF
Sbjct: 4   RLKELEKKIGYTFENHKLLERAMMHSSYTNEKHLEKYRCNERLEFLGDAVLELISSEYLF 63

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                  EGEL+    S+V   + +  AR++DL S++ +             SI +D +E
Sbjct: 64  GELPRVSEGELTKTRASMVCEPSLAMCARDIDLGSYLLLGKGEEATGGRMRDSITSDAME 123

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +LI A+YLDGG   A  F+ ++     L+  K   D+KT LQE   A       Y++   
Sbjct: 124 ALIGAIYLDGGFTSAKEFIHRFILT-DLEDKKLFYDSKTILQEIVQANKAGNITYELVGE 182

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            GPDH+  F V V I G     G   SK+AAEQ AA + +
Sbjct: 183 EGPDHNKTFEVRVRIGGQPYGSGKGRSKKAAEQKAAYQAI 222


>gi|241203889|ref|YP_002974985.1| ribonuclease III [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240857779|gb|ACS55446.1| ribonuclease III [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 239

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 133/226 (58%), Positives = 172/226 (76%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           +SA   + LE  IG+ FA +  L++ALTH+S       +YERLEFLGDR+LGL I+ LLF
Sbjct: 7   LSAADRAKLEALIGHDFAEKERLDRALTHASARTEKGGNYERLEFLGDRVLGLCIAELLF 66

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F +A EGELSVR N LVSAETC+ VA EL+L  +IR  +D++K     M +++ADVVE
Sbjct: 67  RTFGTAGEGELSVRLNQLVSAETCAAVADELNLHLYIRTGADVKKLTGKRMMNVRADVVE 126

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           SLIAA+YLDGG+EVA  F+ +YW+ RA+++   +RDAKTELQEW+HAKFGVTP Y+V  R
Sbjct: 127 SLIAAIYLDGGLEVARRFILRYWQGRAVRADGAKRDAKTELQEWSHAKFGVTPIYRVDER 186

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           SGPDHDPRF V VE++G+ P  G++ SKRAAEQVAA ++L+REGIW
Sbjct: 187 SGPDHDPRFKVTVEVAGIKPETGVERSKRAAEQVAATKMLEREGIW 232


>gi|86357028|ref|YP_468920.1| ribonuclease III [Rhizobium etli CFN 42]
 gi|123512466|sp|Q2KAE3|RNC_RHIEC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|86281130|gb|ABC90193.1| ribonuclease III protein [Rhizobium etli CFN 42]
          Length = 239

 Score =  273 bits (699), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 133/226 (58%), Positives = 172/226 (76%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           +SA   + LE  IG+ FA +  L++ALTH+S       +YERLEFLGDR+LGL I+ LLF
Sbjct: 7   LSAADRAKLEALIGHDFAEKERLDRALTHASARTEKGSNYERLEFLGDRVLGLCIAELLF 66

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F +A EGELSVR N LVSAETC+ VA EL+L  +IR  +D++K     M +++ADVVE
Sbjct: 67  RTFGTAGEGELSVRLNQLVSAETCAAVADELNLHLYIRTGADVKKLTGKRMMNVRADVVE 126

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           SLIAA+YLDGG+EVA  F+ +YW+ RA+++   +RDAKTELQEW+HAKFGVTP Y+V  R
Sbjct: 127 SLIAAIYLDGGLEVARRFILRYWQGRAVRADGAKRDAKTELQEWSHAKFGVTPIYRVDER 186

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           SGPDHDPRF V VE++G+ P  G++ SKRAAEQVAA ++L+REGIW
Sbjct: 187 SGPDHDPRFRVTVEVAGIKPESGVERSKRAAEQVAATKMLEREGIW 232


>gi|167745647|ref|ZP_02417774.1| hypothetical protein ANACAC_00339 [Anaerostipes caccae DSM 14662]
 gi|317472750|ref|ZP_07932063.1| ribonuclease III [Anaerostipes sp. 3_2_56FAA]
 gi|167654959|gb|EDR99088.1| hypothetical protein ANACAC_00339 [Anaerostipes caccae DSM 14662]
 gi|316899776|gb|EFV21777.1| ribonuclease III [Anaerostipes sp. 3_2_56FAA]
          Length = 231

 Score =  273 bits (699), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 79/231 (34%), Positives = 116/231 (50%), Gaps = 6/231 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M+       +K+I   F ++ LL  ALTHSS ++  +    +  ERLEFLGD +L L++S
Sbjct: 1   MNQSNQEDFQKKIKIRFHDKKLLTTALTHSSYANERKLSRGKDNERLEFLGDAVLELIMS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF+ +    EG+L+    SLV   T +  A++L L  ++ +S            SI +
Sbjct: 61  DYLFHTYKDEPEGKLTKMRASLVCEPTLAFCAKDLSLGDYLLLSKGEDLTGGRERDSILS 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D  E++I A+YLD G E A  FV+ Y  Q  +       DAKT LQE   +       Y+
Sbjct: 121 DAFEAVIGAVYLDQGFEEARKFVETYLLQ-DVDEKVLFYDAKTSLQELVQSFSKQPLTYE 179

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK-REGIW 226
           +    GPDH   FTV   +       G   SK++AEQ AA E +K ++GI 
Sbjct: 180 LIKEDGPDHQKTFTVEARLGEKVIGTGTGRSKKSAEQTAAYEAMKHKDGIL 230


>gi|15642457|ref|NP_232090.1| ribonuclease III [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121590982|ref|ZP_01678301.1| ribonuclease III [Vibrio cholerae 2740-80]
 gi|153820073|ref|ZP_01972740.1| ribonuclease III [Vibrio cholerae NCTC 8457]
 gi|153823692|ref|ZP_01976359.1| ribonuclease III [Vibrio cholerae B33]
 gi|227082582|ref|YP_002811133.1| ribonuclease III [Vibrio cholerae M66-2]
 gi|229507479|ref|ZP_04396984.1| ribonuclease III [Vibrio cholerae BX 330286]
 gi|229512326|ref|ZP_04401805.1| ribonuclease III [Vibrio cholerae B33]
 gi|229519462|ref|ZP_04408905.1| ribonuclease III [Vibrio cholerae RC9]
 gi|229606984|ref|YP_002877632.1| ribonuclease III [Vibrio cholerae MJ-1236]
 gi|254849586|ref|ZP_05238936.1| ribonuclease III [Vibrio cholerae MO10]
 gi|298500182|ref|ZP_07009987.1| ribonuclease III [Vibrio cholerae MAK 757]
 gi|18203192|sp|Q9KPB2|RNC_VIBCH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807908|sp|C3LR04|RNC_VIBCM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|9657039|gb|AAF95603.1| ribonuclease III [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121547159|gb|EAX57288.1| ribonuclease III [Vibrio cholerae 2740-80]
 gi|126509385|gb|EAZ71979.1| ribonuclease III [Vibrio cholerae NCTC 8457]
 gi|126518780|gb|EAZ76003.1| ribonuclease III [Vibrio cholerae B33]
 gi|227010470|gb|ACP06682.1| ribonuclease III [Vibrio cholerae M66-2]
 gi|229344151|gb|EEO09126.1| ribonuclease III [Vibrio cholerae RC9]
 gi|229352291|gb|EEO17232.1| ribonuclease III [Vibrio cholerae B33]
 gi|229354984|gb|EEO19905.1| ribonuclease III [Vibrio cholerae BX 330286]
 gi|229369639|gb|ACQ60062.1| ribonuclease III [Vibrio cholerae MJ-1236]
 gi|254845291|gb|EET23705.1| ribonuclease III [Vibrio cholerae MO10]
 gi|297540875|gb|EFH76929.1| ribonuclease III [Vibrio cholerae MAK 757]
          Length = 225

 Score =  273 bits (699), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 79/220 (35%), Positives = 117/220 (53%), Gaps = 6/220 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L  ++GY F    LL  ALTH S +  +    ERLEFLGD IL  +I+  L+  F   
Sbjct: 6   NKLTSKLGYTFKETELLNLALTHRSANGKH---NERLEFLGDSILSFVIADELYRRFPKV 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG++S    +LV   T +++ RE DL  ++++     K       SI AD VE++I A+
Sbjct: 63  NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 122

Query: 127 YLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD  +E A + V +++  R   +K G  ++D KT LQE+   +    P Y VT   G  
Sbjct: 123 YLDSDLETARSIVLEWYHGRLEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 182

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
           H+  FTV  E++G+  P  G   S+R AEQ AA   L++ 
Sbjct: 183 HNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQL 222


>gi|316934144|ref|YP_004109126.1| ribonuclease III [Rhodopseudomonas palustris DX-1]
 gi|315601858|gb|ADU44393.1| ribonuclease III [Rhodopseudomonas palustris DX-1]
          Length = 272

 Score =  273 bits (699), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 105/219 (47%), Positives = 141/219 (64%), Gaps = 2/219 (0%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           +E+RIG++FA+ SLL  ALTH S   S    +SY+RLEFLGD +LGL++S +L+  F  A
Sbjct: 47  IEQRIGHSFADPSLLTTALTHVSALKSARRTDSYQRLEFLGDHVLGLIVSDMLYRAFPDA 106

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS R   LV  E+C+ VAR LDL+  I++ +           S+  D+ E++I A+
Sbjct: 107 DEGELSKRLADLVRKESCADVARHLDLSEGIKIGTVGAGAGAKLRKSVLGDICEAVIGAV 166

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           YLDGG E A  FV   W +R  K  +  RD KT LQEWA A+   TP Y+   R+GP HD
Sbjct: 167 YLDGGYEAASNFVRSNWTERMHKPVRSLRDPKTVLQEWAQARGLPTPVYREVERTGPHHD 226

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           P+F V V + GL PA+G+  SKRAAE+VAA+ +L REG+
Sbjct: 227 PQFRVAVVLPGLEPAEGVGGSKRAAEKVAASAMLAREGV 265


>gi|126698844|ref|YP_001087741.1| ribonuclease III [Clostridium difficile 630]
 gi|254974792|ref|ZP_05271264.1| ribonuclease III [Clostridium difficile QCD-66c26]
 gi|255092180|ref|ZP_05321658.1| ribonuclease III [Clostridium difficile CIP 107932]
 gi|255100264|ref|ZP_05329241.1| ribonuclease III [Clostridium difficile QCD-63q42]
 gi|255306204|ref|ZP_05350376.1| ribonuclease III [Clostridium difficile ATCC 43255]
 gi|255313919|ref|ZP_05355502.1| ribonuclease III [Clostridium difficile QCD-76w55]
 gi|255516598|ref|ZP_05384274.1| ribonuclease III [Clostridium difficile QCD-97b34]
 gi|255649698|ref|ZP_05396600.1| ribonuclease III [Clostridium difficile QCD-37x79]
 gi|260682854|ref|YP_003214139.1| ribonuclease III [Clostridium difficile CD196]
 gi|260686452|ref|YP_003217585.1| ribonuclease III [Clostridium difficile R20291]
 gi|306519814|ref|ZP_07406161.1| ribonuclease III [Clostridium difficile QCD-32g58]
 gi|115250281|emb|CAJ68103.1| ribonuclease III [Clostridium difficile]
 gi|260209017|emb|CBA62108.1| putative ribonuclease III [Clostridium difficile CD196]
 gi|260212468|emb|CBE03371.1| putative ribonuclease III [Clostridium difficile R20291]
          Length = 236

 Score =  273 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 82/226 (36%), Positives = 119/226 (52%), Gaps = 5/226 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLISTLLFNH 62
                E  I Y F N+  + +ALTHSS S+  ++    ERLEFLGD +LG++IS  LFN 
Sbjct: 10  NIQRFENVINYKFKNKEYILEALTHSSYSNENKKYNFNERLEFLGDSVLGIVISDYLFNE 69

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
             +  EGEL+    ++V  ++ S+VA +++L   + +            TSI AD  E++
Sbjct: 70  EANLPEGELTKLRANIVCEDSLSEVANDINLGIHMLLGRGEEATGGRHRTSILADAFEAV 129

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           IAA+YLDGG E A  F+  + +     S  G   RD KT LQE           Y++   
Sbjct: 130 IAAIYLDGGFESARQFILHHMENIIYDSRKGNIFRDYKTHLQEVLQGNGENNIWYRLIEE 189

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
            GPDH+ RF + V I+      G   SK+ AEQ+AA   LK++ +W
Sbjct: 190 KGPDHNKRFVMEVGINDDVLGIGEGKSKKEAEQLAAKIALKKK-LW 234


>gi|86749730|ref|YP_486226.1| ribonuclease III [Rhodopseudomonas palustris HaA2]
 gi|86572758|gb|ABD07315.1| RNAse III [Rhodopseudomonas palustris HaA2]
          Length = 271

 Score =  273 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 102/221 (46%), Positives = 141/221 (63%), Gaps = 3/221 (1%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +E+RIG++FA+ SLL  ALTH S    + +  +SY+RLEFLGD +LGL++S +L+  F 
Sbjct: 44  AIEQRIGHSFADPSLLNTALTHVSALKSARNRADSYQRLEFLGDHVLGLVVSDMLYRAFP 103

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +A EGELS R   LV  ETC+ VAR LDL   +++ +           S+  D+ E++I 
Sbjct: 104 NADEGELSKRLADLVRKETCADVARSLDLDEGVKLGTVGAGAGARLRKSVLGDICEAVIG 163

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A++LDGG   A  FV + W +R  K  +  RD KT LQEWA  K   TP Y+   R+GP 
Sbjct: 164 AVFLDGGYPAAAEFVQRNWTERMRKPTRSLRDPKTVLQEWAQGKGLPTPVYREVERTGPH 223

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           HDP+F V V + GL PA+G+  SKRAAE+VAA+ +L REG+
Sbjct: 224 HDPQFRVAVSLPGLDPAEGVGGSKRAAEKVAASVMLAREGV 264


>gi|209548601|ref|YP_002280518.1| ribonuclease III [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|226741375|sp|B5ZW73|RNC_RHILW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|209534357|gb|ACI54292.1| Ribonuclease III [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 239

 Score =  273 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 133/226 (58%), Positives = 172/226 (76%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           +SA   + LE  IG+ FA +  L++ALTH+S       +YERLEFLGDR+LGL I+ LLF
Sbjct: 7   LSAADRAKLEGLIGHDFAEKERLDRALTHASARTEKGGNYERLEFLGDRVLGLCIAELLF 66

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F +A EGELSVR N LVSAETC+ VA EL+L  +IR  +D++K     M +++ADVVE
Sbjct: 67  RTFGTAGEGELSVRLNQLVSAETCAAVADELNLHLYIRTGADVKKLTGKRMMNVRADVVE 126

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           SLIAA+YLDGG+EVA  F+ +YW+ RA+++   +RDAKTELQEW+HAKFGVTP Y+V  R
Sbjct: 127 SLIAAIYLDGGLEVARRFILRYWQGRAVRADGAKRDAKTELQEWSHAKFGVTPNYRVDER 186

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           SGPDHDPRF V VE++G+ P  G++ SKRAAEQVAA ++L+REGIW
Sbjct: 187 SGPDHDPRFKVTVEVAGIKPETGVERSKRAAEQVAATKMLEREGIW 232


>gi|119774017|ref|YP_926757.1| ribonuclease III [Shewanella amazonensis SB2B]
 gi|189043345|sp|A1S3Y1|RNC_SHEAM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|119766517|gb|ABL99087.1| RNAse III [Shewanella amazonensis SB2B]
          Length = 226

 Score =  273 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 88/225 (39%), Positives = 130/225 (57%), Gaps = 7/225 (3%)

Query: 1   MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  ++    L + +GY F++  LLE+ALTH S S+ +    ERLEFLGD IL ++IS  L
Sbjct: 1   MEPIKNLPRLCRTLGYEFSDIRLLEQALTHRSASNQH---NERLEFLGDSILSIVISDAL 57

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F+ F  A EG+LS    +LV  +T + +A+E  L  ++ +     K       SI AD V
Sbjct: 58  FHQFPKATEGDLSRMRATLVRGDTLAVIAKEFKLGDYLNLGPGELKSGGFRRESILADAV 117

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD  +E   + +  +++ R   +K G  ++DAKT LQE+        PEY+V
Sbjct: 118 EAIIGAVYLDADLETCRSLLLGWYETRLADIKPGVGQKDAKTLLQEYLQGMKKPLPEYQV 177

Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLK 221
           T   G  HD  FTV   ++ LA A  G+  S+R AEQ+AAA+VL+
Sbjct: 178 TQVEGEAHDQTFTVECRVTDLADAVVGVGSSRRKAEQMAAAQVLE 222


>gi|116251277|ref|YP_767115.1| ribonuclease III [Rhizobium leguminosarum bv. viciae 3841]
 gi|189043336|sp|Q1MJ54|RNC_RHIL3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|115255925|emb|CAK07006.1| putative ribonuclease III [Rhizobium leguminosarum bv. viciae 3841]
          Length = 239

 Score =  273 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 133/226 (58%), Positives = 172/226 (76%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           +SA   + LE  IG+ FA +  L++ALTH+S       +YERLEFLGDR+LGL I+ LLF
Sbjct: 7   LSAADRAKLEGLIGHDFAEKERLDRALTHASARTEKGGNYERLEFLGDRVLGLCIAELLF 66

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F +A EGELSVR N LVSAETC+ VA EL+L  +IR  +D++K     M +++ADVVE
Sbjct: 67  RTFGTAGEGELSVRLNQLVSAETCAAVADELNLHLYIRTGADVKKLTGKRMMNVRADVVE 126

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           SLIAA+YLDGG+EVA  F+ +YW+ RA+++   +RDAKTELQEW+HAKFGVTP Y+V  R
Sbjct: 127 SLIAAIYLDGGLEVARRFILRYWQGRAVRADGAKRDAKTELQEWSHAKFGVTPIYRVDER 186

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           SGPDHDPRF V VE++G+ P  G++ SKRAAEQVAA ++L+REGIW
Sbjct: 187 SGPDHDPRFKVTVEVAGIKPETGVERSKRAAEQVAATKMLEREGIW 232


>gi|39935763|ref|NP_948039.1| ribonuclease III [Rhodopseudomonas palustris CGA009]
 gi|192291350|ref|YP_001991955.1| ribonuclease III [Rhodopseudomonas palustris TIE-1]
 gi|81562548|sp|Q6N6C1|RNC_RHOPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|39649616|emb|CAE28138.1| putative ribonuclease III [Rhodopseudomonas palustris CGA009]
 gi|192285099|gb|ACF01480.1| Ribonuclease III [Rhodopseudomonas palustris TIE-1]
          Length = 272

 Score =  273 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 105/221 (47%), Positives = 141/221 (63%), Gaps = 2/221 (0%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           +E+R+G++FA+ SLL  A TH S   S    +SY+RLEFLGD +LGL++S +L+  F  A
Sbjct: 47  IEQRLGHSFADPSLLTTAFTHVSALKSARRTDSYQRLEFLGDHVLGLIVSDMLYRAFPDA 106

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS R   LV  ETC+ VAR LDL   I++ +           S+  D+ E++I A+
Sbjct: 107 DEGELSKRLADLVRKETCADVARSLDLVEGIKLGTVGAGAGAKLRKSVLGDICEAVIGAI 166

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           YLDGG E A  FV + W +R  K  +  RD KT LQEWA A+   TP Y+   R+GP HD
Sbjct: 167 YLDGGYEAASDFVRRNWTERMRKPARSLRDPKTVLQEWAQARGLPTPVYREVERTGPHHD 226

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           P+F V V + GL PA+G+  SKRAAE+VAA+ +L REG+ T
Sbjct: 227 PQFRVAVILPGLEPAEGLGGSKRAAEKVAASAMLAREGVGT 267


>gi|190891073|ref|YP_001977615.1| ribonuclease III protein [Rhizobium etli CIAT 652]
 gi|218515110|ref|ZP_03511950.1| ribonuclease III [Rhizobium etli 8C-3]
 gi|238692512|sp|B3PUN8|RNC_RHIE6 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|190696352|gb|ACE90437.1| ribonuclease III protein [Rhizobium etli CIAT 652]
 gi|327191322|gb|EGE58355.1| ribonuclease III protein [Rhizobium etli CNPAF512]
          Length = 239

 Score =  272 bits (697), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 133/226 (58%), Positives = 172/226 (76%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           +SA   + LE  IG+ FA +  L++ALTH+S       +YERLEFLGDR+LGL I+ LLF
Sbjct: 7   LSAADRAKLESLIGHDFAEKERLDRALTHASARTEKGSNYERLEFLGDRVLGLCIAELLF 66

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F +A EGELSVR N LVSAETC+ VA EL+L  +IR  +D++K     M +++ADVVE
Sbjct: 67  RTFGTAGEGELSVRLNQLVSAETCAAVADELNLHLYIRTGADVKKLTGKRMMNVRADVVE 126

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           SLIAA+YLDGG+EVA  F+ +YW+ RA+++   +RDAKTELQEW+HAKFGVTP Y+V  R
Sbjct: 127 SLIAAIYLDGGLEVARRFILRYWQGRAVRADGAKRDAKTELQEWSHAKFGVTPLYRVDER 186

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           SGPDHDPRF V VE++G+ P  G++ SKRAAEQVAA ++L+REGIW
Sbjct: 187 SGPDHDPRFKVTVEVAGIKPETGVERSKRAAEQVAATKMLEREGIW 232


>gi|254503847|ref|ZP_05115998.1| ribonuclease III [Labrenzia alexandrii DFL-11]
 gi|222439918|gb|EEE46597.1| ribonuclease III [Labrenzia alexandrii DFL-11]
          Length = 235

 Score =  272 bits (697), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 102/224 (45%), Positives = 141/224 (62%), Gaps = 3/224 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + L+  + Y F +  LL  +LTH+S    + +   SY+RLEFLGDR+LGL+++++L +H
Sbjct: 10  IAALKAALAYEFKDLELLRVSLTHASALDPADTVAGSYQRLEFLGDRVLGLVVASMLHHH 69

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F  A EGEL+ RFN +V  ETC+++A EL +   +R+     +      T++ AD+ E++
Sbjct: 70  FPKADEGELARRFNHMVKRETCAEIASELGVGDAMRIGQAEAQTGGRKKTALLADICEAI 129

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           IAA+YLDGG E A  FV + W+ R L      RDAKT LQEWA +K   TP Y+V  R G
Sbjct: 130 IAAIYLDGGFEAADEFVRRLWEPRMLSWTGPLRDAKTTLQEWAQSKSLPTPHYEVASREG 189

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           PDH P FTV V + GL   +G   SKR AEQ AA  VL+REG+W
Sbjct: 190 PDHAPSFTVSVIVQGLKNGEGKGGSKRIAEQHAAEAVLRREGVW 233


>gi|262170590|ref|ZP_06038268.1| ribonuclease III [Vibrio mimicus MB-451]
 gi|261891666|gb|EEY37652.1| ribonuclease III [Vibrio mimicus MB-451]
          Length = 221

 Score =  272 bits (697), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 78/220 (35%), Positives = 117/220 (53%), Gaps = 6/220 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L  ++GY F    LL  ALTH S +  +    ERLEFLGD IL  +I+  L++ F   
Sbjct: 2   NKLTSKLGYTFKEIELLNLALTHRSANGKH---NERLEFLGDSILSFVIADELYHRFPKV 58

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG++S    +LV   T +++ RE DL  ++++     K       SI AD VE++I A+
Sbjct: 59  NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 118

Query: 127 YLDGGIEVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD  +E A   V +++  +   +K G  ++D KT LQE+   +    P Y VT   G  
Sbjct: 119 YLDSDLETARRIVLEWYHCRLEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 178

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
           H+  FTV  E++G+  P  G   S+R AEQ AA   L++ 
Sbjct: 179 HNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQL 218


>gi|262166502|ref|ZP_06034239.1| ribonuclease III [Vibrio mimicus VM223]
 gi|262026218|gb|EEY44886.1| ribonuclease III [Vibrio mimicus VM223]
          Length = 225

 Score =  272 bits (697), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 78/220 (35%), Positives = 117/220 (53%), Gaps = 6/220 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L  ++GY F    LL  ALTH S +  +    ERLEFLGD IL  +I+  L++ F   
Sbjct: 6   NKLTSKLGYTFKEIELLNLALTHRSANGKH---NERLEFLGDSILSFVIADELYHRFPKV 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG++S    +LV   T +++ RE DL  ++++     K       SI AD VE++I A+
Sbjct: 63  NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 122

Query: 127 YLDGGIEVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD  +E A   V +++  +   +K G  ++D KT LQE+   +    P Y VT   G  
Sbjct: 123 YLDSELETARRIVLEWYHCRLEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 182

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
           H+  FTV  E++G+  P  G   S+R AEQ AA   L++ 
Sbjct: 183 HNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQL 222


>gi|295100361|emb|CBK97906.1| RNAse III [Faecalibacterium prausnitzii L2-6]
          Length = 224

 Score =  272 bits (696), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 82/222 (36%), Positives = 116/222 (52%), Gaps = 7/222 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHF 63
             LE  IGY F +  LLE ALTH+S ++  +   +  ERLEFLGD +L ++ +  LF+ +
Sbjct: 3   HQLETIIGYKFKHPELLETALTHTSYANETRPPVKHNERLEFLGDSVLQIVSADYLFHAY 62

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+L+   +SLVS     Q A+E++L  ++R+             S+ +D  E+LI
Sbjct: 63  ADRPEGDLTRIRSSLVSEGALFQFAQEINLGDYLRLGRGEEHCGGRTRPSVVSDAFEALI 122

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           AALYLDGG+EVA  F+  +  +          D KT LQE           Y V   +GP
Sbjct: 123 AALYLDGGMEVAKNFILPFITE----GKHAEADYKTRLQEIVQQNPEEKLSYVVEQETGP 178

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           DH+  F V V  +    A+G   SK+ AEQ AA E LK  G+
Sbjct: 179 DHNKHFVVAVRFNSDCVARGEGRSKKMAEQHAAREALKLLGV 220


>gi|262167292|ref|ZP_06035002.1| ribonuclease III [Vibrio cholerae RC27]
 gi|262190709|ref|ZP_06048940.1| ribonuclease III [Vibrio cholerae CT 5369-93]
 gi|262024267|gb|EEY42958.1| ribonuclease III [Vibrio cholerae RC27]
 gi|262033421|gb|EEY51928.1| ribonuclease III [Vibrio cholerae CT 5369-93]
 gi|327484953|gb|AEA79360.1| Ribonuclease III [Vibrio cholerae LMA3894-4]
          Length = 221

 Score =  272 bits (696), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 79/220 (35%), Positives = 117/220 (53%), Gaps = 6/220 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L  ++GY F    LL  ALTH S +  +    ERLEFLGD IL  +I+  L+  F   
Sbjct: 2   NKLTSKLGYTFKETELLNLALTHRSANGKH---NERLEFLGDSILSFVIADELYRRFPKV 58

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG++S    +LV   T +++ RE DL  ++++     K       SI AD VE++I A+
Sbjct: 59  NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 118

Query: 127 YLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD  +E A   V ++++ R   +K G  ++D KT LQE+   +    P Y VT   G  
Sbjct: 119 YLDSDLETARRIVLEWYQCRLEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 178

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
           H+  FTV  E++G+  P  G   S+R AEQ AA   L++ 
Sbjct: 179 HNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQL 218


>gi|304316939|ref|YP_003852084.1| ribonuclease III [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
 gi|302778441|gb|ADL69000.1| ribonuclease III [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
          Length = 232

 Score =  272 bits (696), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 82/229 (35%), Positives = 124/229 (54%), Gaps = 5/229 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTL 58
           ++ +Y  LEK IGY F N+ LL+ AL HSS ++  +    S ERLEFLGD +L ++IS  
Sbjct: 3   TSEKYENLEKNIGYVFNNKKLLKNALAHSSWANESKNIGISNERLEFLGDSVLSIIISEY 62

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L+      +EG LS   + +V   + ++ ARE++L  ++ +             SI AD 
Sbjct: 63  LYKSRSDLEEGYLSKYRSEIVCEPSLARCAREIELGKYLLMGKGEEMTGGRNRESILADA 122

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           +E+LIAA+YLD  ++ A   V + + +  + + SG   RD KT+LQE           YK
Sbjct: 123 MEALIAAIYLDSDLKTASDIVLRLFDEIIKEVLSGLIYRDYKTKLQEVTQKMGSEKIIYK 182

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           +T   GPDH+  F + V +      +GM  SK+ AEQ AA E L + G+
Sbjct: 183 LTDEYGPDHNKMFVIEVYVGENRLGRGMGRSKKEAEQYAAMEALSKMGL 231


>gi|308048449|ref|YP_003912015.1| RNAse III [Ferrimonas balearica DSM 9799]
 gi|307630639|gb|ADN74941.1| RNAse III [Ferrimonas balearica DSM 9799]
          Length = 224

 Score =  271 bits (695), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 82/226 (36%), Positives = 125/226 (55%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+  + + L+  +GY F + +LL +ALTH S +  +    ERLE+LGD +L  +I+  L+
Sbjct: 1   MNNQKLTRLQDALGYQFKDIALLNQALTHRSAASQH---NERLEYLGDAVLSFVIAEALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG+++    SLV   T +++ REL L   I++     K       SI AD VE
Sbjct: 58  LRFPKVAEGDMTRMRASLVKGVTLAELGRELALGDVIKLGPGELKSGGFRRESILADAVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +++ A+YLDGGIEV    + + ++ R   ++ G  ++D KT LQE   A+    PEY+V 
Sbjct: 118 AILGAVYLDGGIEVCKPLILRLYQARLDIIEPGIRQKDPKTRLQEHLQARKQPLPEYEVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
              G  H+ RFTV   +S L  P  G   S+R AEQ AA+ VL++ 
Sbjct: 178 SVEGDAHNQRFTVRCSVSALAEPMIGNGSSRRKAEQDAASRVLEQL 223


>gi|85712960|ref|ZP_01043999.1| Rnase III, dsRNA-specific ribonuclease [Idiomarina baltica OS145]
 gi|85693198|gb|EAQ31157.1| Rnase III, dsRNA-specific ribonuclease [Idiomarina baltica OS145]
          Length = 228

 Score =  271 bits (695), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 121/226 (53%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           +     + LE+ IGY F  +SLL++ALTH S    +    ERLEFLGD ILG++I+  LF
Sbjct: 3   LPKPPLTQLEQIIGYRFERQSLLKQALTHRSA---HANHNERLEFLGDSILGVVIAEALF 59

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG+LS    ++V   + +++ ++  L  ++ +     K       SI AD +E
Sbjct: 60  SRFPKVAEGDLSRMRAAIVCGRSLARLGKKKGLGDYLSLGQGELKSGGYRRESILADAME 119

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A++LD  ++     V  ++++    +K G  ++D KT LQEW  A+    PEY V 
Sbjct: 120 AIIGAIFLDSDMDTVKQVVLGWFEEQLETIKPGASQKDPKTRLQEWLQARQRPLPEYDVV 179

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
              G  H+ +FTV   I GL  P  G   S+R AEQ AA   L++ 
Sbjct: 180 ATQGQAHNQQFTVTCTIEGLPEPLLGTGTSRRKAEQAAATSALEQL 225


>gi|21672530|ref|NP_660597.1| ribonuclease III [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
 gi|25009123|sp|Q8K9R1|RNC_BUCAP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|21623153|gb|AAM67808.1| ribonuclease III [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
          Length = 226

 Score =  271 bits (695), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 77/228 (33%), Positives = 126/228 (55%), Gaps = 6/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + +++ +GY F ++ LL++ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNHIVANKIQQILGYTFTHQELLKQALTHRSASSKH---NERLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            HF    EG++S    +LV   T +++A E DL  ++++     K       SI A+ VE
Sbjct: 58  QHFPYIDEGDMSRMRATLVRGNTLAEIAYEFDLGEYLQLGQGELKSGGFRRESILANTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI ++YLD  I+     + K++++R   +  G  ++D KT LQE+  +K    P Y + 
Sbjct: 118 ALIGSIYLDSNIKTVEELILKWYEKRLEKISPGDTQKDPKTRLQEYLQSKHLSLPSYFIV 177

Query: 179 FRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREGI 225
              G  H+  FT+  E+S L+    G   S+R AEQ AA + L + G+
Sbjct: 178 EVYGEAHNQLFTIHCEVSTLSTSFIGKGTSRRKAEQDAARKALIKLGV 225


>gi|160946001|ref|ZP_02093227.1| hypothetical protein FAEPRAM212_03534 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443732|gb|EDP20737.1| hypothetical protein FAEPRAM212_03534 [Faecalibacterium prausnitzii
           M21/2]
 gi|295103252|emb|CBL00796.1| RNAse III [Faecalibacterium prausnitzii SL3/3]
          Length = 224

 Score =  271 bits (695), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 86/222 (38%), Positives = 117/222 (52%), Gaps = 7/222 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHF 63
             LE  IGY F N  LLE ALTH+S ++  +   +  ERLEFLGD +L ++ +  LF+ +
Sbjct: 3   HQLETIIGYKFKNPELLEIALTHTSYANESRTPVKHNERLEFLGDSVLQIVSADYLFHAY 62

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+L+    SLVS     Q A+E+DL  ++R+     +       S+ +D  E++I
Sbjct: 63  ADRPEGDLTRIRASLVSESALFQFAQEIDLGEYLRLGRGEERCGGRTRPSVVSDAFEAVI 122

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           AALYLDGG+EVA  F+  +  +          D KT LQE           Y V   SGP
Sbjct: 123 AALYLDGGMEVARKFILPFITE----GKHAEADYKTRLQEIVQQNPEERLSYVVESESGP 178

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           DHD  F V V  +    A+G   SK+AAEQ AA E LK  G+
Sbjct: 179 DHDKHFVVAVRFNSDRVARGEGRSKKAAEQCAAKEALKLLGV 220


>gi|59712694|ref|YP_205470.1| ribonuclease III [Vibrio fischeri ES114]
 gi|197335272|ref|YP_002156886.1| ribonuclease III [Vibrio fischeri MJ11]
 gi|75431522|sp|Q5E314|RNC_VIBF1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|59480795|gb|AAW86582.1| RNase III [Vibrio fischeri ES114]
 gi|197316762|gb|ACH66209.1| ribonuclease III [Vibrio fischeri MJ11]
          Length = 223

 Score =  271 bits (694), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 77/227 (33%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M++     LEK+IGY F + S L+ ALTH S + ++    ERLEFLGD IL  +++  L+
Sbjct: 1   MNS-SLQRLEKKIGYQFKDESFLKLALTHRSANGTH---NERLEFLGDSILSFVVADDLY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ RE  L  ++ +     K       SI AD VE
Sbjct: 57  HRFPKVDEGDMSRMRATLVRGHTLAELGREFQLGDYLYLGPGELKSGGFRRDSILADAVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD   E     +  ++  R   ++ G  ++D KT LQE+   +    P Y VT
Sbjct: 117 AIIGAIYLDSDTETVRGIILSWYNTRLESIEPGVSQKDPKTRLQEYLQGRRKPLPTYTVT 176

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREG 224
              G  H+  FT+   ++GL  P  G   S+R AEQ AA   L +  
Sbjct: 177 KIKGEAHNQEFTIECIVAGLDKPVIGKGSSRRKAEQSAADIALGQLN 223


>gi|158320491|ref|YP_001512998.1| ribonuclease III [Alkaliphilus oremlandii OhILAs]
 gi|158140690|gb|ABW19002.1| Ribonuclease III [Alkaliphilus oremlandii OhILAs]
          Length = 241

 Score =  271 bits (694), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 79/225 (35%), Positives = 118/225 (52%), Gaps = 6/225 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59
            +    +K IGY F N S++ +ALTHSS ++ Y++    + ERLEFLGD +LG+++S  +
Sbjct: 9   EQIKEFQKIIGYQFKNLSIINEALTHSSYTNEYRKKQVQNNERLEFLGDSVLGIVVSEYI 68

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  +    EGEL+    ++V   +    A+E+ L  ++ +             SI AD  
Sbjct: 69  YLKYKDLPEGELTKIRANVVCEPSLGNQAKEIKLGQYLLLGKGEEATGGRDRVSILADAF 128

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E++I ALYLDGGI VAG F+     +       G   RD KT+LQE   +K+     YKV
Sbjct: 129 EAVIGALYLDGGIAVAGKFILDMLTRSIELAIEGNLFRDYKTDLQEILQSKYDEKISYKV 188

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
               GPDH+  F V + +   +   G   SK+ AEQ AA   LK+
Sbjct: 189 VSEVGPDHNKTFEVEILLGEKSLGMGEGKSKKEAEQRAAKSALKK 233


>gi|255655258|ref|ZP_05400667.1| ribonuclease III [Clostridium difficile QCD-23m63]
 gi|296451243|ref|ZP_06892983.1| ribonuclease III [Clostridium difficile NAP08]
 gi|296880405|ref|ZP_06904368.1| ribonuclease III [Clostridium difficile NAP07]
 gi|296259849|gb|EFH06704.1| ribonuclease III [Clostridium difficile NAP08]
 gi|296428646|gb|EFH14530.1| ribonuclease III [Clostridium difficile NAP07]
          Length = 236

 Score =  271 bits (694), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 82/226 (36%), Positives = 119/226 (52%), Gaps = 5/226 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLISTLLFNH 62
                E  I Y F N+  + +ALTHSS S+  ++    ERLEFLGD +LG++IS  LFN 
Sbjct: 10  NIQRFENVINYKFKNKEYILEALTHSSYSNENKKYNFNERLEFLGDSVLGIVISDYLFNE 69

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
             +  EGEL+    ++V  ++ S+VA +++L   + +            TSI AD  E++
Sbjct: 70  EANLPEGELTKLRANIVCEDSLSEVANDINLGVHMLLGRGEEATGGRHRTSILADAFEAV 129

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           IAA+YLDGG E A  F+  + +     S  G   RD KT LQE           Y++   
Sbjct: 130 IAAIYLDGGFESARQFILHHMENIIYDSRKGNIFRDYKTHLQEVLQGNGENNIWYRLIEE 189

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
            GPDH+ RF + V I+      G   SK+ AEQ+AA   LK++ +W
Sbjct: 190 KGPDHNKRFVMEVGINEDVLGIGEGKSKKEAEQLAAKIALKKK-LW 234


>gi|313114998|ref|ZP_07800491.1| ribonuclease III [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310622689|gb|EFQ06151.1| ribonuclease III [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 224

 Score =  271 bits (694), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 86/222 (38%), Positives = 118/222 (53%), Gaps = 7/222 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHF 63
             LE  IGY F N  LLE ALTH+S ++  +   +  ERLEFLGD +L ++ +  LF+ +
Sbjct: 3   HQLETIIGYKFKNPELLEIALTHTSYANESRTPVKHNERLEFLGDSVLQIVSADYLFHAY 62

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+L+    SLVS     Q A+E+DL  ++R+     +       S+ +D  E+LI
Sbjct: 63  ADRPEGDLTRIRASLVSEGALFQFAQEIDLGEYLRLGRGEERCGGRTRPSVVSDAFEALI 122

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           AALYLDGG++VA +F+  +  +          D KT LQE           Y V   SGP
Sbjct: 123 AALYLDGGMDVARSFILPFITE----GKHAEADYKTRLQEIVQQNPEERLSYVVESESGP 178

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           DHD  F V V  +    A+G   SK+AAEQ AA E LK  G+
Sbjct: 179 DHDKHFVVAVRFNSDRVARGEGRSKKAAEQCAAKEALKLLGV 220


>gi|120555160|ref|YP_959511.1| ribonuclease III [Marinobacter aquaeolei VT8]
 gi|120325009|gb|ABM19324.1| RNAse III [Marinobacter aquaeolei VT8]
          Length = 229

 Score =  271 bits (694), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 81/231 (35%), Positives = 119/231 (51%), Gaps = 7/231 (3%)

Query: 1   MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           MS+      L++RIGY F     L  ALTH S  +   ++ ERLEFLGD I+ ++I+  L
Sbjct: 1   MSSQPDLDQLQRRIGYQFKEPERLLLALTHRSFGN---QNNERLEFLGDSIVNMVIAEYL 57

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           + HF+ A+EG+LS     +V   T +++ RE  L  ++R+ S   K       SI AD V
Sbjct: 58  YLHFEKAREGQLSRLRARMVKGVTLAEIGREFQLGQYLRLGSGELKSGGFRRESILADAV 117

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           ES+I A+YLD         V ++++QR   L     ++D KT LQE+  ++    P Y+V
Sbjct: 118 ESIIGAIYLDSDFHTCRAQVLRWFEQRLANLDIQDTQKDPKTRLQEYLQSRQFPLPRYEV 177

Query: 178 TFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGIWT 227
               G  H+  F V   +  L     G   S+R AEQ AA   LK+ G+  
Sbjct: 178 ISVDGEAHNQTFHVSCALPSLDRKTTGTGSSRRVAEQQAARNALKQLGVEN 228


>gi|150390513|ref|YP_001320562.1| ribonuclease III [Alkaliphilus metalliredigens QYMF]
 gi|149950375|gb|ABR48903.1| Ribonuclease III [Alkaliphilus metalliredigens QYMF]
          Length = 239

 Score =  271 bits (694), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 80/220 (36%), Positives = 116/220 (52%), Gaps = 6/220 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
            E+ I Y F ++ LL++ALTHSS ++  +    +  ERLEFLGD +LG++IS  +F  + 
Sbjct: 14  FEEMIQYQFKDKQLLKEALTHSSYANESKVKKIKHNERLEFLGDSVLGIIISDYIFKKYT 73

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+L+    ++V        A +++L  F+R+             SI AD  E+LI 
Sbjct: 74  HLPEGDLTKVRANVVCEPALGSCATKINLGGFLRLGRGEEVSGGRQRESILADAFEALIG 133

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           ALYLDGG+ +A TFV  +      ++  G   RD KT LQE   +K      Y+V   SG
Sbjct: 134 ALYLDGGMVIAQTFVLNHLIDSVEQATKGSLFRDYKTYLQELLQSKHSERITYQVIKESG 193

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           PDH   F V V +       GM  SK+ AEQ AA E +++
Sbjct: 194 PDHSKIFDVEVLLGEQLLGHGMGKSKKEAEQRAAKEAVEK 233


>gi|255746868|ref|ZP_05420813.1| ribonuclease III [Vibrio cholera CIRS 101]
 gi|262162033|ref|ZP_06031049.1| ribonuclease III [Vibrio cholerae INDRE 91/1]
 gi|255735270|gb|EET90670.1| ribonuclease III [Vibrio cholera CIRS 101]
 gi|262028282|gb|EEY46939.1| ribonuclease III [Vibrio cholerae INDRE 91/1]
          Length = 221

 Score =  271 bits (694), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 79/220 (35%), Positives = 117/220 (53%), Gaps = 6/220 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L  ++GY F    LL  ALTH S +  +    ERLEFLGD IL  +I+  L+  F   
Sbjct: 2   NKLTSKLGYTFKETELLNLALTHRSANGKH---NERLEFLGDSILSFVIADELYRRFPKV 58

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG++S    +LV   T +++ RE DL  ++++     K       SI AD VE++I A+
Sbjct: 59  NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 118

Query: 127 YLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD  +E A + V +++  R   +K G  ++D KT LQE+   +    P Y VT   G  
Sbjct: 119 YLDSDLETARSIVLEWYHGRLEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 178

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
           H+  FTV  E++G+  P  G   S+R AEQ AA   L++ 
Sbjct: 179 HNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQL 218


>gi|315652049|ref|ZP_07905050.1| ribonuclease III [Eubacterium saburreum DSM 3986]
 gi|315485696|gb|EFU76077.1| ribonuclease III [Eubacterium saburreum DSM 3986]
          Length = 228

 Score =  271 bits (694), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 81/228 (35%), Positives = 118/228 (51%), Gaps = 6/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M+    + L++ +GY + NR LL++ALTHSS ++ +Q     S ERLEFLGD +L L+ S
Sbjct: 1   MNN-NLNELQELLGYEYKNRELLKQALTHSSYANEHQLGKNGSNERLEFLGDAVLELVSS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
              +  +    EGEL+    S V        A  + L+ FIR+          F  SI +
Sbjct: 60  EFFYEVYPDKPEGELTKIRASFVCEPALVDCAGNIRLSEFIRLGKGEEHTGGRFRPSIIS 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D  E++I ++YLDGG   A   + K+      ++  F  D+KT LQE   ++     EY 
Sbjct: 120 DTFEAVIGSIYLDGGFANAKEVILKFILNGY-ENKVFFYDSKTILQEIIQSQDSRPVEYC 178

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +    GPDH  +F V V I+G     G   SK++AEQ AA E LK+ G
Sbjct: 179 LLSEEGPDHLKKFVVAVNINGQVAGVGEGVSKKSAEQAAAYEALKKLG 226


>gi|257440564|ref|ZP_05616319.1| ribonuclease III [Faecalibacterium prausnitzii A2-165]
 gi|257196887|gb|EEU95171.1| ribonuclease III [Faecalibacterium prausnitzii A2-165]
          Length = 224

 Score =  271 bits (693), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 84/222 (37%), Positives = 118/222 (53%), Gaps = 7/222 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHF 63
             LE  IGY F N  LLE ALTH+S ++  +   +  ERLEFLGD +L ++ +  LF+ +
Sbjct: 3   HQLETIIGYKFKNPKLLETALTHTSYANESRTPVQHNERLEFLGDSVLQIVSADYLFHAY 62

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+L+   +SLVS     Q A+E++L  ++R+     +       S+ +D  E++I
Sbjct: 63  ADRPEGDLTRIRSSLVSEGALFQFAQEINLGEYLRLGRGEERCGGRTRPSVVSDAFEAVI 122

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           AALYLDGG+EVA +F+  +  +          D KT LQE           Y V   SGP
Sbjct: 123 AALYLDGGMEVAKSFILPFITE----GKHAEADYKTRLQEIVQQNPEERLSYVVEQESGP 178

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           DHD  F V V  +    A+G   SK+ AEQ AA E LK  G+
Sbjct: 179 DHDKHFVVAVRFNSDKVARGEGRSKKMAEQHAAREALKLLGV 220


>gi|83644632|ref|YP_433067.1| ribonuclease III [Hahella chejuensis KCTC 2396]
 gi|123534042|sp|Q2SL32|RNC_HAHCH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|83632675|gb|ABC28642.1| ribonuclease III [Hahella chejuensis KCTC 2396]
          Length = 226

 Score =  271 bits (693), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 87/228 (38%), Positives = 124/228 (54%), Gaps = 7/228 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+A +   L++ +GY F   +LL  ALTH S       + ERLEFLGD +L  +I+  LF
Sbjct: 1   MTA-KLERLQRALGYTFKEPALLTLALTHRSFG---GRNNERLEFLGDSVLNFIIADYLF 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F+ A+EG+LS     +V   T +++ARE DL  ++R+ S   K       SI AD +E
Sbjct: 57  GRFEEAREGQLSRLRARMVKGVTLAEIAREFDLGEYLRLGSGEMKSGGFRRESILADALE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           S+I A+YLD G EV    V  +++ R   L     ++D+KT LQE+  A+    P Y+V 
Sbjct: 117 SIIGAIYLDAGFEVCADRVLNWFEARLQKLNLKDTQKDSKTRLQEYLQARQLNLPRYEVI 176

Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREGI 225
              G  H   F V  EI GL+ A +G   S+R AEQ AA + L   G+
Sbjct: 177 SVQGEAHAQTFHVRCEIDGLSDATEGTGSSRRVAEQKAAKQALLALGV 224


>gi|27904735|ref|NP_777861.1| ribonuclease III [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|29427422|sp|P59476|RNC_BUCBP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|27904132|gb|AAO26966.1| ribonuclease III [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 226

 Score =  271 bits (693), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 79/228 (34%), Positives = 121/228 (53%), Gaps = 6/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+      L+K +GY F  + LL +ALTH S +  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNHTVIQKLQKILGYTFIKKDLLIQALTHRSANSKH---NERLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++A E DL  ++++     K       SI A+ VE
Sbjct: 58  HCFPHVNEGDMSRMRATLVRGHTLAKIAYEFDLGDYLQLGQGELKSGGFRRESILANTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI +++LD  ++     + K++K R  A+     ++D KT LQE+  +K    P Y V 
Sbjct: 118 ALIGSIFLDSNLKTIEKLILKWYKNRLKAINPSDTQKDPKTRLQEYLQSKHLPLPSYLVE 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225
              G  H+  FT+  EISG+     G+  S+R AEQ AA   L + GI
Sbjct: 178 QVYGEAHNQLFTIYCEISGINEKTIGIGSSRRKAEQEAAQNALIKLGI 225


>gi|148560325|ref|YP_001258645.1| ribonuclease III [Brucella ovis ATCC 25840]
 gi|306837522|ref|ZP_07470397.1| ribonuclease III [Brucella sp. NF 2653]
 gi|306842074|ref|ZP_07474746.1| ribonuclease III [Brucella sp. BO2]
 gi|148371582|gb|ABQ61561.1| ribonuclease III [Brucella ovis ATCC 25840]
 gi|306287824|gb|EFM59247.1| ribonuclease III [Brucella sp. BO2]
 gi|306407414|gb|EFM63618.1| ribonuclease III [Brucella sp. NF 2653]
          Length = 257

 Score =  270 bits (692), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 119/220 (54%), Positives = 156/220 (70%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S LE+R G+ F N   LE+ALTHSS+    + +YERLEFLGDR+LGL ++ +LF  F  A
Sbjct: 32  SILEERTGHRFLNLKRLERALTHSSVQAPARANYERLEFLGDRVLGLTVAEMLFEAFPEA 91

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELSVR N+LV+AETC+ +A E+ LA  I   SD++      + +++ADVVE+LIA +
Sbjct: 92  SEGELSVRLNALVNAETCAAIADEIGLADLIHTGSDIKSLNDKRLLNVRADVVEALIATI 151

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           YLDGG+E A +F+ +YWK+R+L++G  RRDAKTELQEWAH +  V P Y +  RSGPDHD
Sbjct: 152 YLDGGLEAARSFIQRYWKKRSLETGAARRDAKTELQEWAHQQGNVHPVYAILSRSGPDHD 211

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           P F V V + G AP +G   SKR AEQ AA  +L REG+W
Sbjct: 212 PLFLVEVTVKGFAPEKGEGRSKRIAEQSAAEAMLYREGVW 251


>gi|306845262|ref|ZP_07477838.1| ribonuclease III [Brucella sp. BO1]
 gi|306274421|gb|EFM56228.1| ribonuclease III [Brucella sp. BO1]
          Length = 257

 Score =  270 bits (692), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 119/220 (54%), Positives = 156/220 (70%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S LE+R G+ F N   LE+ALTHSS+    + +YERLEFLGDR+LGL ++ +LF  F  A
Sbjct: 32  SILEERTGHRFLNLKRLERALTHSSVQAPARANYERLEFLGDRVLGLTVAEMLFEAFPEA 91

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELSVR N+LV+AETC+ +A E+ LA  I   SD++      + +++ADVVE+LIA +
Sbjct: 92  SEGELSVRLNALVNAETCAAIADEIGLADLIHTGSDIKSLNDKRLLNVRADVVEALIATI 151

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           YLDGG+E A +F+ +YWK+R+L++G  RRDAKTELQEWAH +  V P Y +  RSGPDHD
Sbjct: 152 YLDGGLEAARSFIQRYWKKRSLETGAARRDAKTELQEWAHQQGNVHPVYAILSRSGPDHD 211

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           P F V V + G AP +G   SKR AEQ AA  +L REG+W
Sbjct: 212 PLFLVEVTVKGFAPEKGEGRSKRIAEQSAAEAMLYREGVW 251


>gi|15616869|ref|NP_240082.1| ribonuclease III [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
 gi|219681624|ref|YP_002468010.1| ribonuclease III [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|219682181|ref|YP_002468565.1| ribonuclease III [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
 gi|257471312|ref|ZP_05635311.1| ribonuclease III [Buchnera aphidicola str. LSR1 (Acyrthosiphon
           pisum)]
 gi|11134313|sp|P57346|RNC_BUCAI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807240|sp|B8D951|RNC_BUCA5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807241|sp|B8D7F5|RNC_BUCAT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|25289216|pir||H84959 ribonuclease III (EC 3.1.26.3) [imported] - Buchnera sp.  (strain
           APS)
 gi|10038933|dbj|BAB12968.1| ribonuclease III [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
 gi|219621914|gb|ACL30070.1| ribonuclease III [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
 gi|219624467|gb|ACL30622.1| ribonuclease III [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|311085996|gb|ADP66078.1| ribonuclease III [Buchnera aphidicola str. LL01 (Acyrthosiphon
           pisum)]
 gi|311086571|gb|ADP66652.1| ribonuclease III [Buchnera aphidicola str. TLW03 (Acyrthosiphon
           pisum)]
 gi|311087152|gb|ADP67232.1| ribonuclease III [Buchnera aphidicola str. JF99 (Acyrthosiphon
           pisum)]
 gi|311087686|gb|ADP67765.1| ribonuclease III [Buchnera aphidicola str. JF98 (Acyrthosiphon
           pisum)]
          Length = 226

 Score =  270 bits (692), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 77/228 (33%), Positives = 124/228 (54%), Gaps = 6/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +    ++K +GY F ++ LL++ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNHIVTKKIQKVLGYTFTHKDLLKQALTHRSASSKH---NERLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            HF    EG++S    +LV   T +++A E DL  ++++     K       SI A+ VE
Sbjct: 58  QHFPYIDEGDMSRMRATLVRGNTLAEIAYEFDLGEYLKLGQGELKSGGFRRESILANTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI ++YLD  I+     + K++++R   +  G  ++D KT LQE+  +K    P Y + 
Sbjct: 118 ALIGSIYLDSNIKTVEELILKWYEKRLEKISPGDTQKDPKTRLQEYLQSKHLSLPLYFIV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225
              G  H+  FT+  +IS +     G   S+R AEQ AA + L + G+
Sbjct: 178 EVYGEAHNQLFTIHCKISTISEYLIGTGSSRRKAEQDAAQKALIKLGV 225


>gi|159184588|ref|NP_354058.2| ribonuclease III [Agrobacterium tumefaciens str. C58]
 gi|22654057|sp|Q8UGK2|RNC_AGRT5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|159139890|gb|AAK86843.2| ribonuclease III [Agrobacterium tumefaciens str. C58]
          Length = 239

 Score =  270 bits (692), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 129/226 (57%), Positives = 164/226 (72%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           +SA   S LE  IGY F  ++ L++ALTH+S   +   +YERLEFLGDR+LGL ++ LLF
Sbjct: 7   LSADEISRLEALIGYEFKEKARLDRALTHASARSAAAGNYERLEFLGDRVLGLCVAELLF 66

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F +A EGELSVR N LVSAE+C+ +  E+ L +FIR  SD++K     M +++ADVVE
Sbjct: 67  STFRNASEGELSVRLNQLVSAESCAAIGDEMGLHNFIRTGSDVKKLTGKAMLNVRADVVE 126

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           SLIA LYLDGG+E +  F+ KYW+ RA      RRDAKTELQEWAHA+F  TP Y+V  R
Sbjct: 127 SLIATLYLDGGLEASRKFILKYWQGRATSVDAGRRDAKTELQEWAHARFAATPAYRVDDR 186

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           SGPDHDP FTV VEI G+ P  G++ SKRAAEQVAA  +L+REG+W
Sbjct: 187 SGPDHDPSFTVTVEIPGVKPETGVERSKRAAEQVAATRLLEREGVW 232


>gi|319957798|ref|YP_004169061.1| rnase iii [Nitratifractor salsuginis DSM 16511]
 gi|319420202|gb|ADV47312.1| RNAse III [Nitratifractor salsuginis DSM 16511]
          Length = 226

 Score =  270 bits (692), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 81/222 (36%), Positives = 120/222 (54%), Gaps = 4/222 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
             Y  LE+R+GY F N  L+ +ALTH S    Y  + ERLEFLGD +L L++   LF+ F
Sbjct: 2   ENYHELERRLGYEFKNPQLIVEALTHKSYKKPY--NNERLEFLGDAVLDLIVGEFLFHKF 59

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             + EG LS    SLV+    + +AR +DL  +I +S     +      S+ ++  E++I
Sbjct: 60  PQSDEGVLSKIRASLVNESGFATLARAIDLGRYIYLSPAEENNQGRSKPSLLSNAFEAVI 119

Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+YL+ G+E A + V +   +    +      +D KT LQE   A  GVTP+Y++   S
Sbjct: 120 GAIYLEAGLENARSIVVRLLDETYPRIDLDTLCKDYKTALQELTQATHGVTPDYEMIGSS 179

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           GPDH   F V V++ G   A     SK+AA+Q AA   L++ 
Sbjct: 180 GPDHRKEFEVAVKLDGETIASAKGRSKKAAQQKAAEIALQKL 221


>gi|134299915|ref|YP_001113411.1| ribonuclease III [Desulfotomaculum reducens MI-1]
 gi|189043307|sp|A4J683|RNC_DESRM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|134052615|gb|ABO50586.1| RNAse III [Desulfotomaculum reducens MI-1]
          Length = 246

 Score =  270 bits (692), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 81/223 (36%), Positives = 113/223 (50%), Gaps = 6/223 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNH 62
           + L+ R+G+ + N +LL +ALTHSS  H  +       +RLEFLGD +L L+IS  L+  
Sbjct: 9   NRLKTRLGFKWHNPTLLIQALTHSSCVHENRGHGLCHNQRLEFLGDAVLELIISEHLYKM 68

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EGEL+    S V   + ++VAR LDL   +R+     +       SI AD  E+L
Sbjct: 69  FPDRTEGELTKMRASSVCEPSLAKVARGLDLGRCLRMGRGEERSGGRERPSILADAFEAL 128

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           + A+YLD G+E++  FV            +G+  RD KTELQE           Y +   
Sbjct: 129 LGAIYLDQGLEISRHFVLNCLSSIIDDVVAGRLDRDYKTELQEILQQSSPDPLTYTIMDE 188

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           SGPDHD  FT  V   G    +G   SK+ AEQ AA +  +  
Sbjct: 189 SGPDHDKTFTAGVIYKGKVIGKGSGHSKKEAEQQAAKDAFQHL 231


>gi|260588638|ref|ZP_05854551.1| ribonuclease III [Blautia hansenii DSM 20583]
 gi|260541113|gb|EEX21682.1| ribonuclease III [Blautia hansenii DSM 20583]
          Length = 263

 Score =  270 bits (692), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 79/226 (34%), Positives = 121/226 (53%), Gaps = 5/226 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLIST 57
           ++ ++  LEK+IGY F N  LL  ALTHSS ++ +    +E+ ERLEFLGD +L L  S 
Sbjct: 30  NSKKFLELEKKIGYEFENFDLLVNALTHSSYANEHHIAYKENNERLEFLGDAVLELTSSE 89

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF  +    EG+L+ +  S+V   T +  A+E+ L  ++ +             SI +D
Sbjct: 90  FLFYQYADLPEGKLTKKRASIVCEPTLALCAKEISLGDYLLLGKGEEATGGRNRNSIISD 149

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
            +E+LI A+YLDGG   A  FV KY     +++ +   D+KT LQE   A++    +Y +
Sbjct: 150 AMEALIGAIYLDGGFANAKEFVHKYIL-NDIENKQLFYDSKTTLQEIVQAQYEDDVKYVL 208

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               GPDH+  F V   +      +G   +K+AAEQ AA   +K+ 
Sbjct: 209 VKEEGPDHNKSFYVEALLGDKKLGEGCGHTKKAAEQQAAYCAIKKL 254


>gi|220931875|ref|YP_002508783.1| Ribonuclease III [Halothermothrix orenii H 168]
 gi|219993185|gb|ACL69788.1| Ribonuclease III [Halothermothrix orenii H 168]
          Length = 236

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 77/217 (35%), Positives = 110/217 (50%), Gaps = 6/217 (2%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
              F + SLL+KA+TH S  H       E  ERLEFLGD +L ++IST L+ +F    EG
Sbjct: 18  NIRFNDISLLQKAVTHKSFVHEKSDPDLEDNERLEFLGDSVLSIVISTYLYKNFPEYNEG 77

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           EL+     +VS+   +  AREL L  +I +      +      SI AD +E++I A+YLD
Sbjct: 78  ELAKMRAYIVSSSHLACKARELGLGKYILMGKGEELNGGRERESILADTLEAVIGAIYLD 137

Query: 130 GGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
            G       +  ++K     L  G   RD KT LQE+         +Y +    GPDH+ 
Sbjct: 138 QGFNTITDLLINFFKDDVKKLDQGNIIRDYKTYLQEFIQKDGSCEIKYNIINEYGPDHNK 197

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +F V V+++G    +G   SK+ AEQ AA + L   G
Sbjct: 198 KFEVGVKVNGKELGRGTGFSKKEAEQKAAKDALSNLG 234


>gi|153009954|ref|YP_001371169.1| ribonuclease III [Ochrobactrum anthropi ATCC 49188]
 gi|151561842|gb|ABS15340.1| Ribonuclease III [Ochrobactrum anthropi ATCC 49188]
          Length = 234

 Score =  270 bits (690), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 115/228 (50%), Positives = 157/228 (68%), Gaps = 2/228 (0%)

Query: 1   MSALRYST--LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58
           M++   +   LE+R G+ F N   L++ALTHSS+    + +YERLEFLGDR+LGL ++ +
Sbjct: 1   MASANQAAAILEERTGHRFLNLKRLDRALTHSSVQAPSRANYERLEFLGDRVLGLTVAEM 60

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF+ F  A EGELSVR N+LV+AETC+ +A E+ LA+ I   SD++      + +++ADV
Sbjct: 61  LFDEFPDASEGELSVRLNALVNAETCAAIADEIGLANLIHTGSDIKSLNDKRLLNVRADV 120

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           VE+LIA +YLDGG+E    FV +YW++R+L++G  RRDAKTELQEWAH +  V P Y + 
Sbjct: 121 VEALIATIYLDGGLEAVRPFVKRYWEKRSLQTGAARRDAKTELQEWAHQQGNVHPSYAII 180

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
            R+GPDHDP F V V + G A   G   SKR AEQ AA  +L REG+W
Sbjct: 181 SRTGPDHDPLFAVEVTVKGFATETGEGRSKRIAEQNAAEAMLYREGVW 228


>gi|309389054|gb|ADO76934.1| RNAse III [Halanaerobium praevalens DSM 2228]
          Length = 237

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 76/228 (33%), Positives = 114/228 (50%), Gaps = 6/228 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIST 57
           +  +    EK +   F N+ LLE+ALTH S  +  +    +  ERLEFLGD +L L IST
Sbjct: 6   NKRKTLKFEKSLDLNFNNKFLLERALTHKSYPNENRHLNLKDNERLEFLGDSVLSLSIST 65

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            +FN F    EG+L+     +VSA   ++ A+ ++L  ++ +             SI AD
Sbjct: 66  YIFNKFSDFPEGDLAKMRAVIVSAPILAEAAKRINLGQYLFLGKGEEMTGGRERDSILAD 125

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEY 175
            +E++  ALYLD   +V   F+ +  K   +   +G   +D KT LQE         PEY
Sbjct: 126 TMEAIFGALYLDQSFKVVSDFILELLKVDIINVAAGNHIQDYKTMLQEVIQDMGNFRPEY 185

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +V    GPDH+  F V V+++  +   G   SK+ AEQ AA   L + 
Sbjct: 186 EVIDEEGPDHNKTFIVAVKMNEESLGSGQGSSKKEAEQEAAKVALDKL 233


>gi|331082011|ref|ZP_08331139.1| ribonuclease III [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330405606|gb|EGG85136.1| ribonuclease III [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 236

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 79/226 (34%), Positives = 121/226 (53%), Gaps = 5/226 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLIST 57
           ++ ++  LEK+IGY F N  LL  ALTHSS ++ +    +E+ ERLEFLGD +L L  S 
Sbjct: 3   NSKKFLELEKKIGYEFENFDLLVNALTHSSYANEHHIAYKENNERLEFLGDAVLELTSSE 62

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF  +    EG+L+ +  S+V   T +  A+E+ L  ++ +             SI +D
Sbjct: 63  FLFYQYADLPEGKLTKKRASIVCEPTLALCAKEISLGDYLLLGKGEEATGGRNRNSIISD 122

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
            +E+LI A+YLDGG   A  FV KY     +++ +   D+KT LQE   A++    +Y +
Sbjct: 123 AMEALIGAIYLDGGFANAKEFVHKYIL-NDIENKQLFYDSKTTLQEIVQAQYEDDVKYVL 181

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               GPDH+  F V   +      +G   +K+AAEQ AA   +K+ 
Sbjct: 182 VKEEGPDHNKSFYVEALLGDKKLGEGCGHTKKAAEQQAAYCAIKKL 227


>gi|325292414|ref|YP_004278278.1| ribonuclease III [Agrobacterium sp. H13-3]
 gi|325060267|gb|ADY63958.1| ribonuclease III [Agrobacterium sp. H13-3]
          Length = 237

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 129/226 (57%), Positives = 165/226 (73%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           +S    S LE  IGY F  ++ L++ALTH+S   +   +YERLEFLGDR+LGL ++ LLF
Sbjct: 7   LSIAEISRLEALIGYEFKEKARLDRALTHASARSAAAGNYERLEFLGDRVLGLCVAELLF 66

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F +A EGELSVR N LVSAE+C+ +  E+ L +FIR  SD++K     M +++ADVVE
Sbjct: 67  STFRNASEGELSVRLNQLVSAESCAAIGDEMGLHNFIRTGSDVKKLTGKAMLNVRADVVE 126

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           SLIA LYLDGG+E +  F+ KYW+ RA +    RRDAKTELQEWAHA+F VTP Y+V  R
Sbjct: 127 SLIATLYLDGGLEASRKFILKYWQGRATRVDAGRRDAKTELQEWAHARFAVTPAYRVDDR 186

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           SGPDHDP FTV VEI G+ P  G++ SKRAAEQVAA  +L+REG+W
Sbjct: 187 SGPDHDPSFTVTVEIPGVKPETGVERSKRAAEQVAATRLLEREGVW 232


>gi|307256562|ref|ZP_07538343.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|306864972|gb|EFM96874.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
          Length = 243

 Score =  269 bits (688), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 80/226 (35%), Positives = 120/226 (53%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ ++   L+K++GY F N   L +ALTH S      ++ ERLEFLGD IL   I   LF
Sbjct: 18  MNNMQLERLQKKLGYQFTNLDYLLQALTHRSAG---AKNNERLEFLGDSILNFAIGKALF 74

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELS    +LV  +T + +AR+  L  ++++ +   K       SI +D VE
Sbjct: 75  EKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVE 134

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++IAA+YLD G++ A   V  +++     +K G  ++D KT LQE+   +    P Y+V 
Sbjct: 135 AIIAAIYLDAGMDKAIAQVHLWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVL 194

Query: 179 FRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              G  H+  F V  +I        G+  S+R AEQ AA +VL + 
Sbjct: 195 DIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAKL 240


>gi|307245400|ref|ZP_07527488.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|306853741|gb|EFM85958.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
          Length = 243

 Score =  269 bits (688), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 80/226 (35%), Positives = 120/226 (53%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ ++   L+K++GY F N   L +ALTH S      ++ ERLEFLGD IL   I   LF
Sbjct: 18  MNNMQLERLQKKLGYQFTNLDYLLQALTHRSAG---AKNNERLEFLGDSILNFAIGKALF 74

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELS    +LV  +T + +AR+  L  ++++ +   K       SI +D VE
Sbjct: 75  EKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVE 134

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++IAA+YLD G++ A   V  +++     +K G  ++D KT LQE+   +    P Y+V 
Sbjct: 135 AIIAAIYLDAGMDKAIEQVHLWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVL 194

Query: 179 FRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              G  H+  F V  +I        G+  S+R AEQ AA +VL + 
Sbjct: 195 DIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAKL 240


>gi|114706260|ref|ZP_01439162.1| ribonuclease III [Fulvimarina pelagi HTCC2506]
 gi|114538121|gb|EAU41243.1| ribonuclease III [Fulvimarina pelagi HTCC2506]
          Length = 234

 Score =  269 bits (688), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 116/223 (52%), Positives = 154/223 (69%), Gaps = 2/223 (0%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHF 63
            + LEKRIG  F++   L++ALTHSS   S     SYERLEFLGDR+LGL+++  LF  F
Sbjct: 8   LAELEKRIGVRFSDHDRLQRALTHSSFRSSKGDGRSYERLEFLGDRVLGLVVADKLFEMF 67

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            +A EGELS+R NSLV+AETC+ VA E+ L  F+R   DLRK   S   SI+AD++ESLI
Sbjct: 68  PNADEGELSLRLNSLVNAETCAAVADEIGLYEFVRQGGDLRKLAASRTKSIRADLMESLI 127

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           AA+YL+ G++ A  F++ +W +R  KS   RRD KT LQEWAH +    P+Y+V  RSGP
Sbjct: 128 AAIYLNSGLDDARAFIESHWGERLNKSVAARRDPKTALQEWAHQRGPEPPKYEVVDRSGP 187

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           DH+P+F + V I+G+ P++G   SKR AEQ AA  +L RE +W
Sbjct: 188 DHNPKFRIKVSIAGVDPSEGEGSSKRLAEQSAATAMLIRENVW 230


>gi|239831496|ref|ZP_04679825.1| ribonuclease III [Ochrobactrum intermedium LMG 3301]
 gi|239823763|gb|EEQ95331.1| ribonuclease III [Ochrobactrum intermedium LMG 3301]
          Length = 234

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 113/228 (49%), Positives = 156/228 (68%), Gaps = 2/228 (0%)

Query: 1   MSALRYST--LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58
           M++   +   LE+R G+ F N   L++ALTHSS+    + +YERLEFLGDR+LGL ++ +
Sbjct: 1   MASANQAAAILEERTGHRFLNVKRLDRALTHSSVQAPSRANYERLEFLGDRVLGLTVAEM 60

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L++ F  A EGELSVR N+LV+AETC+ +A E+ LA  I   SD++      + +++ADV
Sbjct: 61  LYDEFPEASEGELSVRLNALVNAETCAAIADEIGLADLIHTGSDIKSLNDKRLLNVRADV 120

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           VE+LIA +YLDGG++    FV ++WK+R+L++G  RRDAKTELQEWAH +  V P Y + 
Sbjct: 121 VEALIATIYLDGGLDAVRPFVKRFWKKRSLQTGAARRDAKTELQEWAHQQGNVHPAYSII 180

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
            R+GPDHDP F V V + G A   G   SKR AEQ AA  +L REG+W
Sbjct: 181 SRTGPDHDPLFMVEVTVKGFAAETGEGRSKRIAEQHAAEAMLYREGVW 228


>gi|310658889|ref|YP_003936610.1| ribonuclease 3 [Clostridium sticklandii DSM 519]
 gi|308825667|emb|CBH21705.1| Ribonuclease 3 (Ribonuclease III) (RNase III) [Clostridium
           sticklandii]
          Length = 229

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 84/230 (36%), Positives = 122/230 (53%), Gaps = 7/230 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M +  Y  L+K+I Y F +  LL++ALTHSS S+ Y++    + ERLEFLGD ILGL+IS
Sbjct: 1   MKSKSY-ELQKKINYEFQDLKLLKEALTHSSYSNEYKKIKNRNNERLEFLGDSILGLIIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF       EGEL+    ++V   +   +A+ + L  ++ +             SI A
Sbjct: 60  NYLFRLKKELPEGELTKIRAAIVCERSLKDIAKSIHLGEYLYLGKGEESTGGRTRDSILA 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPE 174
           D  E+LIAA+YLDGG   A  FV ++      ++  GK  RD KT+LQE           
Sbjct: 120 DATEALIAAIYLDGGFRKATDFVLEHMGDIISQAIQGKIMRDYKTQLQELIQKDNKENII 179

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           YK+  + GPDHD  F + V +       G+  SK+ AEQ AA + +++E 
Sbjct: 180 YKLVDQLGPDHDKTFKMNVFLGEKLIGTGIGKSKKEAEQEAAKDAMEKEN 229


>gi|291550077|emb|CBL26339.1| RNAse III [Ruminococcus torques L2-14]
          Length = 228

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 81/220 (36%), Positives = 115/220 (52%), Gaps = 5/220 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           R   LE++IGY F ++SL+E+AL HSS ++       E  ERLEFLGD +L L+ S  LF
Sbjct: 3   RVKELEQKIGYVFKDKSLIERALMHSSYTNEKHLKKYECNERLEFLGDAVLELVSSAYLF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N F    EGEL+    S+V   + +  AR++ L  ++ +             SI +D +E
Sbjct: 63  NEFPKVSEGELTKTRASMVCEPSLAMCARDIGLGDYLLLGKGEEATGGRKRDSITSDAME 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +LI A+YLDGG   A  F+  +     L+  K   D+KT LQE   A       Y++   
Sbjct: 123 ALIGAIYLDGGFTNAKEFIHHFILT-DLEDKKLFYDSKTILQEIVQANMTGNVSYELIDE 181

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            GPDH+  F V   I   A  +G   SK++AEQ AA E +
Sbjct: 182 QGPDHNKIFEVEARIGRKAWGRGKGSSKKSAEQQAAYEAI 221


>gi|209695943|ref|YP_002263873.1| ribonuclease III [Aliivibrio salmonicida LFI1238]
 gi|208009896|emb|CAQ80209.1| ribonuclease III (RNase III) [Aliivibrio salmonicida LFI1238]
          Length = 223

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 75/218 (34%), Positives = 114/218 (52%), Gaps = 6/218 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              LE++IGY F +   L+ ALTH S + ++    ERLEFLGD IL  +++  L++ F  
Sbjct: 5   LQRLERKIGYKFNDEGFLKLALTHRSANGTH---NERLEFLGDSILSFVVADELYHRFPK 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG++S    +LV   T +++ RE +L  ++ +     K       SI AD VE++I  
Sbjct: 62  VDEGDMSRMRATLVRGHTLAELGREFELGDYLFLGPGELKSGGFRRDSILADAVEAIIGG 121

Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YLD   EV    +  ++K R   ++ G  ++D KT LQE+   +    P Y VT   G 
Sbjct: 122 IYLDSDTEVIRRIILAWYKTRLDSIEPGISQKDPKTRLQEYLQGRRKPLPTYTVTKIKGE 181

Query: 184 DHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVL 220
            H+  FT+   ++GL  P  G   S+R AEQ AA   L
Sbjct: 182 AHNQEFTIECIVAGLDKPVIGKGSSRRKAEQSAADIAL 219


>gi|261211555|ref|ZP_05925843.1| ribonuclease III [Vibrio sp. RC341]
 gi|260839510|gb|EEX66136.1| ribonuclease III [Vibrio sp. RC341]
          Length = 221

 Score =  268 bits (687), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 78/220 (35%), Positives = 116/220 (52%), Gaps = 6/220 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L  ++GY F    LL  ALTH S +  +    ERLEFLGD IL  +I+  L+  F   
Sbjct: 2   NKLTSKLGYTFKETELLNLALTHRSANGKH---NERLEFLGDSILSFVIADELYRRFPKV 58

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG++S    +LV   T +++ RE DL  ++++     K       SI AD VE++I A+
Sbjct: 59  NEGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAI 118

Query: 127 YLDGGIEVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD  +E A   V +++  +   +K G  ++D KT LQE+   +    P Y VT   G  
Sbjct: 119 YLDSELETARRIVLEWYHCRLEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEA 178

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
           H+  FTV  E++G+  P  G   S+R AEQ AA   L++ 
Sbjct: 179 HNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQL 218


>gi|326791395|ref|YP_004309216.1| ribonuclease III [Clostridium lentocellum DSM 5427]
 gi|326542159|gb|ADZ84018.1| ribonuclease III [Clostridium lentocellum DSM 5427]
          Length = 240

 Score =  268 bits (687), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 76/228 (33%), Positives = 112/228 (49%), Gaps = 7/228 (3%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIST 57
            ++    +++++ Y F N +LLE+ALTHSS ++ ++    +  ERLEFLGD IL L+IS 
Sbjct: 10  KSIVLDEMQRKLSYTFTNSNLLEEALTHSSYANEHRNERVKDNERLEFLGDAILDLIISE 69

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF       EG+LS    S+V   + +++AR + L  +I +             SI AD
Sbjct: 70  YLFKKHPEMPEGDLSKIRASIVCEASLAKMARFIGLGEYILLGKGEEMTGGRERASILAD 129

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPE 174
             E+L  AL+LDGG   A  F+        ++         D KT LQE           
Sbjct: 130 GFEALTGALFLDGGFNEAKCFLTDTLIAQVEQVASLEDLYTDYKTLLQECIQKVSNAPIH 189

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           Y+V    GPDHD  F V V    ++  +G+  SK+ AEQ AA + L  
Sbjct: 190 YEVVGEEGPDHDKYFYVEVYHDTISLGRGIGKSKKEAEQDAAKKALNN 237


>gi|116628032|ref|YP_820651.1| ribonuclease III [Streptococcus thermophilus LMD-9]
 gi|122267372|sp|Q03K17|RNC_STRTD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|116101309|gb|ABJ66455.1| RNAse III [Streptococcus thermophilus LMD-9]
 gi|312278628|gb|ADQ63285.1| Ribonuclease 3 [Streptococcus thermophilus ND03]
          Length = 229

 Score =  268 bits (687), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 76/230 (33%), Positives = 115/230 (50%), Gaps = 8/230 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M+ L    LE+  G  F+ + LLE A TH+S ++ ++       ERLEFLGD  L L+IS
Sbjct: 1   MNQLE-QKLEQDFGIVFSQKDLLETAFTHTSYANEHRLLNISHNERLEFLGDAALQLVIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+N + +  EGE+S   +++V  E+ +   +      +IR+     K       +I  
Sbjct: 60  VYLYNRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQYIRLGKGEEKSGGRERATILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D+ E+ + ALYLD G+     F+++    + ++ G F R  D KT LQE       V   
Sbjct: 120 DLWEAFLGALYLDQGLPAVEKFLNQVMIPQ-VEKGNFDRVIDYKTALQERLQVNGKVDIT 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           Y V   SGP H   FT+ V + G   + G   SK+ AEQ AA   L++ G
Sbjct: 179 YTVIDESGPAHAKEFTMQVAVDGKELSTGFGKSKKLAEQAAAKSALEQLG 228


>gi|327399771|ref|YP_004340640.1| Ribonuclease 3 [Hippea maritima DSM 10411]
 gi|327182400|gb|AEA34581.1| Ribonuclease 3 [Hippea maritima DSM 10411]
          Length = 234

 Score =  268 bits (687), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 80/218 (36%), Positives = 123/218 (56%), Gaps = 2/218 (0%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             E+R+GY F N+ LL++ALTH S      +S ERLEFLGD +L L+++  L N++ +  
Sbjct: 12  EFEERLGYTFKNKELLKRALTHRSYVKDKAKSNERLEFLGDAVLELVVTEFLINNYKNID 71

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG+LS    + V+ +T S++AR+L+L+  I V    +K+  +   SI  D  E+++ A+Y
Sbjct: 72  EGKLSKIRAASVNTKTLSKLARKLELSDQILVGRSEKKEGITNNDSILEDAFEAIVGAIY 131

Query: 128 LDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           LDGG++ A  FV+   K   +         D KT LQE    +FG  PEY +    G +H
Sbjct: 132 LDGGLDKARRFVEHMLKDTIIAIVENGIIFDYKTHLQEITQKQFGCLPEYVIVKEDGQEH 191

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  F   V I G+    G+  SK+ AE+ AA E +K+ 
Sbjct: 192 NKTFYCDVMIKGVKYGFGIGKSKKDAEKNAAKEAVKKL 229


>gi|17987570|ref|NP_540204.1| ribonuclease III [Brucella melitensis bv. 1 str. 16M]
 gi|23501548|ref|NP_697675.1| ribonuclease III [Brucella suis 1330]
 gi|62289621|ref|YP_221414.1| ribonuclease III [Brucella abortus bv. 1 str. 9-941]
 gi|82699549|ref|YP_414123.1| ribonuclease III [Brucella melitensis biovar Abortus 2308]
 gi|161618631|ref|YP_001592518.1| ribonuclease III [Brucella canis ATCC 23365]
 gi|163842933|ref|YP_001627337.1| ribonuclease III [Brucella suis ATCC 23445]
 gi|189023875|ref|YP_001934643.1| ribonuclease III [Brucella abortus S19]
 gi|225852182|ref|YP_002732415.1| ribonuclease III [Brucella melitensis ATCC 23457]
 gi|254688937|ref|ZP_05152191.1| ribonuclease III [Brucella abortus bv. 6 str. 870]
 gi|254693419|ref|ZP_05155247.1| ribonuclease III [Brucella abortus bv. 3 str. Tulya]
 gi|254697072|ref|ZP_05158900.1| ribonuclease III [Brucella abortus bv. 2 str. 86/8/59]
 gi|254701449|ref|ZP_05163277.1| ribonuclease III [Brucella suis bv. 5 str. 513]
 gi|254703995|ref|ZP_05165823.1| ribonuclease III [Brucella suis bv. 3 str. 686]
 gi|254707631|ref|ZP_05169459.1| ribonuclease III [Brucella pinnipedialis M163/99/10]
 gi|254709787|ref|ZP_05171598.1| ribonuclease III [Brucella pinnipedialis B2/94]
 gi|254713789|ref|ZP_05175600.1| ribonuclease III [Brucella ceti M644/93/1]
 gi|254717154|ref|ZP_05178965.1| ribonuclease III [Brucella ceti M13/05/1]
 gi|254718802|ref|ZP_05180613.1| ribonuclease III [Brucella sp. 83/13]
 gi|254729968|ref|ZP_05188546.1| ribonuclease III [Brucella abortus bv. 4 str. 292]
 gi|256031277|ref|ZP_05444891.1| ribonuclease III [Brucella pinnipedialis M292/94/1]
 gi|256044358|ref|ZP_05447262.1| ribonuclease III [Brucella melitensis bv. 1 str. Rev.1]
 gi|256060789|ref|ZP_05450951.1| ribonuclease III [Brucella neotomae 5K33]
 gi|256113201|ref|ZP_05454069.1| ribonuclease III [Brucella melitensis bv. 3 str. Ether]
 gi|256159387|ref|ZP_05457169.1| ribonuclease III [Brucella ceti M490/95/1]
 gi|256254685|ref|ZP_05460221.1| ribonuclease III [Brucella ceti B1/94]
 gi|256257185|ref|ZP_05462721.1| ribonuclease III [Brucella abortus bv. 9 str. C68]
 gi|256264307|ref|ZP_05466839.1| ribonuclease III family protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|256369099|ref|YP_003106607.1| ribonuclease III [Brucella microti CCM 4915]
 gi|260168415|ref|ZP_05755226.1| ribonuclease III [Brucella sp. F5/99]
 gi|260883452|ref|ZP_05895066.1| ribonuclease III [Brucella abortus bv. 9 str. C68]
 gi|261221863|ref|ZP_05936144.1| ribonuclease III [Brucella ceti B1/94]
 gi|261324780|ref|ZP_05963977.1| ribonuclease III [Brucella neotomae 5K33]
 gi|265988360|ref|ZP_06100917.1| ribonuclease III [Brucella pinnipedialis M292/94/1]
 gi|265990773|ref|ZP_06103330.1| ribonuclease III [Brucella melitensis bv. 1 str. Rev.1]
 gi|265994609|ref|ZP_06107166.1| ribonuclease III [Brucella melitensis bv. 3 str. Ether]
 gi|265997827|ref|ZP_06110384.1| ribonuclease III [Brucella ceti M490/95/1]
 gi|54039241|sp|P66665|RNC_BRUSU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|54041613|sp|P66664|RNC_BRUME RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|75497081|sp|Q57E81|RNC_BRUAB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|90101615|sp|Q2YN02|RNC_BRUA2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043295|sp|A9MA35|RNC_BRUC2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043296|sp|B0CKY7|RNC_BRUSI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|238691497|sp|B2SAD9|RNC_BRUA1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807239|sp|C0RI03|RNC_BRUMB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|17983275|gb|AAL52468.1| ribonuclease iii [Brucella melitensis bv. 1 str. 16M]
 gi|23347459|gb|AAN29590.1| ribonuclease III [Brucella suis 1330]
 gi|62195753|gb|AAX74053.1| ribonuclease III [Brucella abortus bv. 1 str. 9-941]
 gi|82615650|emb|CAJ10637.1| Ribonuclease III family:Double-stranded RNA binding (DsRBD) domain
           [Brucella melitensis biovar Abortus 2308]
 gi|161335442|gb|ABX61747.1| ribonuclease III [Brucella canis ATCC 23365]
 gi|163673656|gb|ABY37767.1| ribonuclease III [Brucella suis ATCC 23445]
 gi|189019447|gb|ACD72169.1| Ribonuclease III family [Brucella abortus S19]
 gi|225640547|gb|ACO00461.1| ribonuclease III [Brucella melitensis ATCC 23457]
 gi|255999259|gb|ACU47658.1| ribonuclease III [Brucella microti CCM 4915]
 gi|260872980|gb|EEX80049.1| ribonuclease III [Brucella abortus bv. 9 str. C68]
 gi|260920447|gb|EEX87100.1| ribonuclease III [Brucella ceti B1/94]
 gi|261300760|gb|EEY04257.1| ribonuclease III [Brucella neotomae 5K33]
 gi|262552295|gb|EEZ08285.1| ribonuclease III [Brucella ceti M490/95/1]
 gi|262765722|gb|EEZ11511.1| ribonuclease III [Brucella melitensis bv. 3 str. Ether]
 gi|263001557|gb|EEZ14132.1| ribonuclease III [Brucella melitensis bv. 1 str. Rev.1]
 gi|263094580|gb|EEZ18378.1| ribonuclease III family protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|264660557|gb|EEZ30818.1| ribonuclease III [Brucella pinnipedialis M292/94/1]
          Length = 245

 Score =  268 bits (686), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 119/220 (54%), Positives = 156/220 (70%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S LE+R G+ F N   LE+ALTHSS+    + +YERLEFLGDR+LGL ++ +LF  F  A
Sbjct: 20  SILEERTGHRFLNLKRLERALTHSSVQAPARANYERLEFLGDRVLGLTVAEMLFEAFPEA 79

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELSVR N+LV+AETC+ +A E+ LA  I   SD++      + +++ADVVE+LIA +
Sbjct: 80  SEGELSVRLNALVNAETCAAIADEIGLADLIHTGSDIKSLNDKRLLNVRADVVEALIATI 139

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           YLDGG+E A +F+ +YWK+R+L++G  RRDAKTELQEWAH +  V P Y +  RSGPDHD
Sbjct: 140 YLDGGLEAARSFIQRYWKKRSLETGAARRDAKTELQEWAHQQGNVHPVYAILSRSGPDHD 199

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           P F V V + G AP +G   SKR AEQ AA  +L REG+W
Sbjct: 200 PLFLVEVTVKGFAPEKGEGRSKRIAEQSAAEAMLYREGVW 239


>gi|149374709|ref|ZP_01892483.1| ribonuclease III [Marinobacter algicola DG893]
 gi|149361412|gb|EDM49862.1| ribonuclease III [Marinobacter algicola DG893]
          Length = 229

 Score =  268 bits (686), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 80/231 (34%), Positives = 117/231 (50%), Gaps = 7/231 (3%)

Query: 1   MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           MS+      L++RIGY F     L  ALTH S  +   ++ ERLEFLGD I+ ++I+  L
Sbjct: 1   MSSQPDLEQLQRRIGYQFKTPERLLLALTHRSFGN---QNNERLEFLGDSIVNMVIAEYL 57

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           + HF+ A+EG+LS     +V   T +++ RE +L  ++R+ S   K       SI AD V
Sbjct: 58  YLHFEKAREGQLSRLRARMVKGVTLAEIGREFELGKYLRLGSGEMKSGGFRRESILADAV 117

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           ES+I A+YLD         V ++++ R   L     ++D KT LQE+  ++    P Y V
Sbjct: 118 ESIIGAIYLDSDFHTCREQVLRWFEVRLQKLDLQDTQKDPKTRLQEYLQSRQFPLPRYDV 177

Query: 178 TFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGIWT 227
               G  H   F V   +  L     G   S+R AEQ AA   LK+ G+  
Sbjct: 178 ISVDGEAHAQTFHVSCALPSLDRKTTGTGNSRRIAEQQAARNALKQLGVEN 228


>gi|55821300|ref|YP_139742.1| ribonuclease III [Streptococcus thermophilus LMG 18311]
 gi|55823213|ref|YP_141654.1| ribonuclease III [Streptococcus thermophilus CNRZ1066]
 gi|81559233|sp|Q5LZ68|RNC_STRT1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|81560422|sp|Q5M3S3|RNC_STRT2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|55737285|gb|AAV60927.1| ribonuclease III [Streptococcus thermophilus LMG 18311]
 gi|55739198|gb|AAV62839.1| ribonuclease III [Streptococcus thermophilus CNRZ1066]
          Length = 237

 Score =  268 bits (686), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 76/230 (33%), Positives = 116/230 (50%), Gaps = 8/230 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M+ L    LE+  G  F+ + LLE A TH+S ++ ++       ERLEFLGD  L L+IS
Sbjct: 9   MNQLE-QKLEQDFGIVFSQKDLLETAFTHTSYANEHRLLNISHNERLEFLGDAALQLVIS 67

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+N + +  EGE+S   +++V  E+ +   +      +IR+     K       +I  
Sbjct: 68  VYLYNRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQYIRLGKGEEKSGGRERATILG 127

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D+ E+ + ALYLD G+     F+++    + ++ G F R  D KT LQE       V   
Sbjct: 128 DLWEAFLGALYLDQGLPAVEKFLNQVMIPQ-VEKGNFDRVIDYKTALQERLQVNGKVDIT 186

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           Y V   SGP H   FT+ V + G   + G+  SK+ AEQ AA   L++ G
Sbjct: 187 YTVIDESGPAHAKEFTMQVAVDGKELSTGLGKSKKLAEQAAAKSALEQLG 236


>gi|91794117|ref|YP_563768.1| ribonuclease III [Shewanella denitrificans OS217]
 gi|123165871|sp|Q12KI1|RNC_SHEDO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|91716119|gb|ABE56045.1| RNAse III [Shewanella denitrificans OS217]
          Length = 226

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 83/225 (36%), Positives = 125/225 (55%), Gaps = 7/225 (3%)

Query: 1   MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  ++  + L + +GY F N+ LL +ALTH S ++ +    ERLEFLGD IL ++IS  L
Sbjct: 1   MEPVKNLARLSRTLGYEFTNQELLVQALTHRSAANKH---NERLEFLGDSILSIVISDAL 57

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           ++ F  A EG+LS    +LV  ET + +A+E  L  ++ +     K       SI AD V
Sbjct: 58  YHQFPKATEGDLSRMRATLVKGETLTLIAKEFKLGDYLFLGPGELKSGGFRRESILADAV 117

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD  ++   T +  ++K R   +K G  ++D KT LQE+        P+Y+V
Sbjct: 118 EAIIGAVYLDANMQACETLLLSWYKVRLDEIKPGINQKDPKTILQEYLQGYKKPLPDYQV 177

Query: 178 TFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLK 221
               G  HD  FTV   I  L     G+  S+R AEQ+AAA++L+
Sbjct: 178 VQVDGEAHDQTFTVECRIQDLDEVVTGVGSSRRKAEQLAAAQILE 222


>gi|114564093|ref|YP_751607.1| ribonuclease III [Shewanella frigidimarina NCIMB 400]
 gi|122299035|sp|Q07YZ6|RNC_SHEFN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|114335386|gb|ABI72768.1| RNAse III [Shewanella frigidimarina NCIMB 400]
 gi|211926923|dbj|BAG82671.1| ribonuclease III [Shewanella sp. SIB1]
          Length = 226

 Score =  268 bits (685), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 85/225 (37%), Positives = 125/225 (55%), Gaps = 7/225 (3%)

Query: 1   MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  ++    L + +GY F N  LL +ALTH S ++ +    ERLEFLGD IL + IS  L
Sbjct: 1   MEPIKNLPRLCRTLGYEFNNIELLIQALTHRSAANKH---NERLEFLGDSILSIAISDAL 57

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           ++ F  A EG+LS    +LV  +T + +A+E  L  ++ +     K       SI AD V
Sbjct: 58  YHQFPKATEGDLSRMRATLVKGDTLTIIAKEFKLGDYLYLGPGELKSGGFRRESILADAV 117

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD  IEV    +  ++++R   +K G  ++D KT LQE+        P+Y+V
Sbjct: 118 EAIIGAVYLDADIEVCRKLLLSWYQERLAEIKPGINQKDPKTILQEYLQGFKKPLPDYQV 177

Query: 178 TFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLK 221
               G  HD  FTV  +IS L     G+  S+R AEQ+AAA+VL+
Sbjct: 178 VAVEGEAHDQTFTVECKISELDKVVTGVASSRRKAEQLAAAQVLE 222


>gi|307244287|ref|ZP_07526402.1| ribonuclease III [Peptostreptococcus stomatis DSM 17678]
 gi|306492437|gb|EFM64475.1| ribonuclease III [Peptostreptococcus stomatis DSM 17678]
          Length = 235

 Score =  268 bits (685), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 80/225 (35%), Positives = 120/225 (53%), Gaps = 5/225 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFN 61
                 E++IGY F N++ ++ ALTHSS ++ ++E    ERLEFLGD +LGL++S  LF 
Sbjct: 10  ESIRAFEEKIGYEFKNKTYIQTALTHSSFANEHKEFNYNERLEFLGDSVLGLVVSDYLFR 69

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
             +   EG+L+    ++V  E+ S VAR+++L   + +    +    S   SI AD  E+
Sbjct: 70  ARNDLPEGKLTRLRANVVCEESLSAVARKINLGDHLFLGKGEKTSGGSDRDSILADATEA 129

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           +IAA+YLDGG + A  F+    +    K   G   RD KT LQE      G    YK+  
Sbjct: 130 VIAAIYLDGGFDQAKDFILSNLRDTIAKNIDGNIFRDYKTILQEIIQGNNGK-ISYKLVG 188

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            SGPDH+  F + V+        G   +K+ AE+ AA + L + G
Sbjct: 189 ESGPDHNKEFEMQVKCGQDTIGIGKGKNKKEAEKEAARDALVKMG 233


>gi|88858204|ref|ZP_01132846.1| RNase III, dsRNA [Pseudoalteromonas tunicata D2]
 gi|88819821|gb|EAR29634.1| RNase III, dsRNA [Pseudoalteromonas tunicata D2]
          Length = 225

 Score =  268 bits (685), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 77/223 (34%), Positives = 118/223 (52%), Gaps = 6/223 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+    + L  +IGY F N +LLE+A+TH S      +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNK-NVTDLYTKIGYTFNNVALLEQAMTHRS---HKGQHNERLEFLGDSILSFVIANELY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  ++EG+LS   ++LV  +T ++   E +L  ++R+     K       S  AD VE
Sbjct: 57  KRFPKSREGDLSRMRSTLVRGQTLAEFGLEFNLGDYLRLGPGELKSGGYRRESTLADAVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A++LD GI+     +  ++K R   +  G  ++D KT LQE+  A+    P Y V 
Sbjct: 117 AIIGAVFLDSGIDTCSNLILSWYKFRLDEISPGLNQKDPKTLLQEYLQARKLPLPNYTVI 176

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              G  H+  FTV   + G+     +  S+R AEQ AA + LK
Sbjct: 177 DTKGQAHNQSFTVECVVEGMNSIVSVGSSRRKAEQKAAEKALK 219


>gi|164688568|ref|ZP_02212596.1| hypothetical protein CLOBAR_02213 [Clostridium bartlettii DSM
           16795]
 gi|164602981|gb|EDQ96446.1| hypothetical protein CLOBAR_02213 [Clostridium bartlettii DSM
           16795]
          Length = 233

 Score =  268 bits (685), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 80/225 (35%), Positives = 118/225 (52%), Gaps = 4/225 (1%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLF 60
           +      E++I Y F N+  + +ALTHSS S+  +     ERLEFLGD +L ++IS  LF
Sbjct: 8   SSNIELFEQKINYEFKNKEYILEALTHSSYSNENKNYPFNERLEFLGDSVLSIVISDYLF 67

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                  EGEL+    ++V  E+ S+V++ + L  ++ +             SI AD +E
Sbjct: 68  KKETKLPEGELTKIRANIVCEESLSEVSKNIHLGKYMLLGKGEEATGGRERISILADALE 127

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++IAA+YLDGGI+ A  F+    ++    S  GK  RD KT LQE   +       YK+ 
Sbjct: 128 AVIAAIYLDGGIKCAREFILTNMEKIINDSIKGKIFRDYKTCLQEVLQSNGENNIWYKLI 187

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              GPDH+ RF + V I+      G   SK+ AEQVAA   L ++
Sbjct: 188 EEKGPDHNKRFVMEVGINDTVLGVGEGKSKKDAEQVAAKCALDKK 232


>gi|320547232|ref|ZP_08041525.1| ribonuclease III [Streptococcus equinus ATCC 9812]
 gi|320448120|gb|EFW88870.1| ribonuclease III [Streptococcus equinus ATCC 9812]
          Length = 228

 Score =  268 bits (685), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 117/225 (52%), Gaps = 6/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M AL  + L++  G  F + +LL+ A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MQALD-TKLQRDFGITFKDTTLLDTAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  +    EG+LS   + +V  E+ +  +R      FI++ +   K       +I  
Sbjct: 60  QYLFKKYPKKPEGDLSKMRSVIVREESLAGFSRYCGFDDFIKLGNGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + AL +D G+E    F+++    +  K   +  +D KT LQE       VT +Y
Sbjct: 120 DLFEAFLGALLMDQGVEAVNKFLNQVMIPQVEKGNFERVKDYKTTLQELLQGHGDVTIDY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +V+  SGP H   F V V ++  A +QG+  SK+ AEQ AA   L
Sbjct: 180 RVSNESGPAHAKVFEVTVYVNDEAKSQGIGKSKKLAEQDAAKNAL 224


>gi|117921465|ref|YP_870657.1| ribonuclease III [Shewanella sp. ANA-3]
 gi|189043353|sp|A0KZN2|RNC_SHESA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|117613797|gb|ABK49251.1| RNAse III [Shewanella sp. ANA-3]
          Length = 226

 Score =  268 bits (685), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 82/225 (36%), Positives = 125/225 (55%), Gaps = 7/225 (3%)

Query: 1   MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  ++    L + +GY F N  LL +ALTH S ++ +    ERLEFLGD IL ++IS  L
Sbjct: 1   MEPIKNLPRLCRTLGYEFKNIDLLTQALTHRSAANKH---NERLEFLGDSILSIVISDAL 57

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           ++ F  A EG+LS    +LV  +T + +A+   L  ++ +     K       SI AD V
Sbjct: 58  YHQFPKATEGDLSRMRATLVRGDTLTLIAKAFKLGDYLFLGPGELKSGGFRRESILADAV 117

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD  +EV    +  ++ +R   ++ G  ++DAKT LQE+        P+Y+V
Sbjct: 118 EAIIGAIYLDSDLEVCRKLLLHWYAERLAEIQPGVNQKDAKTLLQEYLQGLKKPLPDYQV 177

Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLK 221
               G  HD  FTV   I  L+ +  G+  S+R AEQ+AAA+VL+
Sbjct: 178 INIEGDAHDQTFTVECRIDDLSESVIGVASSRRKAEQIAAAQVLE 222


>gi|157150981|ref|YP_001450082.1| ribonuclease III [Streptococcus gordonii str. Challis substr. CH1]
 gi|189043362|sp|A8AWC2|RNC_STRGC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|157075775|gb|ABV10458.1| Ribonuclease III (RNase III) [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 232

 Score =  267 bits (684), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 76/230 (33%), Positives = 117/230 (50%), Gaps = 8/230 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L  + L  R G  F + SLLE A TH+S ++ ++       ERLEFLGD +L L+IS
Sbjct: 1   MKKLE-NLLFDRFGLVFKDVSLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  +    EG+L+   +++V  E+ +  +R+     FI++     K       +I  
Sbjct: 60  EYLFEKYPKRPEGDLTKLRSTIVREESLAGFSRDCQFDRFIKLGKGEEKSGGRERETILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D+ E+ + AL LD G+EV   F+ +    + +++G F +  D KT+LQE   +   V   
Sbjct: 120 DLFEAFLGALLLDKGLEVVKNFIYQVMIPK-VEAGDFEQVTDYKTKLQELLQSNGDVEIL 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           Y+V   SGP H   F V V + G    +G   SK+ AEQ AA    ++E 
Sbjct: 179 YQVVSESGPAHAKNFEVSVSVDGRLVGKGQGRSKKLAEQEAAKNAFEKEN 228


>gi|260437031|ref|ZP_05790847.1| ribonuclease III [Butyrivibrio crossotus DSM 2876]
 gi|292810340|gb|EFF69545.1| ribonuclease III [Butyrivibrio crossotus DSM 2876]
          Length = 227

 Score =  267 bits (684), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 85/221 (38%), Positives = 119/221 (53%), Gaps = 5/221 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59
           +     EK+IGYA+ N  LL+ ALTHSS  +   +    + ERLEFLGD +L L +S  L
Sbjct: 1   MNIKEFEKKIGYAYNNVDLLKLALTHSSYGNEVYKDKLHNNERLEFLGDAVLELTVSDYL 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           FN   +  EG LS +  S+V   T +  ARE++L   + +          F  SI +D +
Sbjct: 61  FNEECNMPEGSLSRKRASIVCEPTLAMCAREINLPEVLFMGKGEELTGGRFRDSIVSDAM 120

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E++I ++YLDGGIE A  F++K+     +K  +   D+KT LQE   A +   PEY +T 
Sbjct: 121 EAVIGSIYLDGGIECAREFINKFILA-DIKDKQLFVDSKTILQERIQAGYKEGPEYIITG 179

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            SGPDH   F   V I G     G   +K+AAEQ AA   +
Sbjct: 180 ESGPDHCKVFEAEVRIEGRLIGSGKGRTKKAAEQQAAYNAI 220


>gi|237815116|ref|ZP_04594114.1| ribonuclease III [Brucella abortus str. 2308 A]
 gi|260545623|ref|ZP_05821364.1| ribonuclease III [Brucella abortus NCTC 8038]
 gi|260563710|ref|ZP_05834196.1| ribonuclease III [Brucella melitensis bv. 1 str. 16M]
 gi|260566758|ref|ZP_05837228.1| ribonuclease III family protein [Brucella suis bv. 4 str. 40]
 gi|260754424|ref|ZP_05866772.1| ribonuclease III [Brucella abortus bv. 6 str. 870]
 gi|260757643|ref|ZP_05869991.1| ribonuclease III [Brucella abortus bv. 4 str. 292]
 gi|260761470|ref|ZP_05873813.1| ribonuclease III [Brucella abortus bv. 2 str. 86/8/59]
 gi|261213670|ref|ZP_05927951.1| ribonuclease III [Brucella abortus bv. 3 str. Tulya]
 gi|261218969|ref|ZP_05933250.1| ribonuclease III [Brucella ceti M13/05/1]
 gi|261315123|ref|ZP_05954320.1| ribonuclease III [Brucella pinnipedialis M163/99/10]
 gi|261317321|ref|ZP_05956518.1| ribonuclease III [Brucella pinnipedialis B2/94]
 gi|261321532|ref|ZP_05960729.1| ribonuclease III [Brucella ceti M644/93/1]
 gi|261751989|ref|ZP_05995698.1| ribonuclease III [Brucella suis bv. 5 str. 513]
 gi|261754648|ref|ZP_05998357.1| ribonuclease III [Brucella suis bv. 3 str. 686]
 gi|261757876|ref|ZP_06001585.1| ribonuclease III family [Brucella sp. F5/99]
 gi|265983784|ref|ZP_06096519.1| ribonuclease III [Brucella sp. 83/13]
 gi|294852025|ref|ZP_06792698.1| ribonuclease III [Brucella sp. NVSL 07-0026]
 gi|297248033|ref|ZP_06931751.1| ribonuclease III [Brucella abortus bv. 5 str. B3196]
 gi|237789953|gb|EEP64163.1| ribonuclease III [Brucella abortus str. 2308 A]
 gi|260097030|gb|EEW80905.1| ribonuclease III [Brucella abortus NCTC 8038]
 gi|260153726|gb|EEW88818.1| ribonuclease III [Brucella melitensis bv. 1 str. 16M]
 gi|260156276|gb|EEW91356.1| ribonuclease III family protein [Brucella suis bv. 4 str. 40]
 gi|260667961|gb|EEX54901.1| ribonuclease III [Brucella abortus bv. 4 str. 292]
 gi|260671902|gb|EEX58723.1| ribonuclease III [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674532|gb|EEX61353.1| ribonuclease III [Brucella abortus bv. 6 str. 870]
 gi|260915277|gb|EEX82138.1| ribonuclease III [Brucella abortus bv. 3 str. Tulya]
 gi|260924058|gb|EEX90626.1| ribonuclease III [Brucella ceti M13/05/1]
 gi|261294222|gb|EEX97718.1| ribonuclease III [Brucella ceti M644/93/1]
 gi|261296544|gb|EEY00041.1| ribonuclease III [Brucella pinnipedialis B2/94]
 gi|261304149|gb|EEY07646.1| ribonuclease III [Brucella pinnipedialis M163/99/10]
 gi|261737860|gb|EEY25856.1| ribonuclease III family [Brucella sp. F5/99]
 gi|261741742|gb|EEY29668.1| ribonuclease III [Brucella suis bv. 5 str. 513]
 gi|261744401|gb|EEY32327.1| ribonuclease III [Brucella suis bv. 3 str. 686]
 gi|264662376|gb|EEZ32637.1| ribonuclease III [Brucella sp. 83/13]
 gi|294820614|gb|EFG37613.1| ribonuclease III [Brucella sp. NVSL 07-0026]
 gi|297175202|gb|EFH34549.1| ribonuclease III [Brucella abortus bv. 5 str. B3196]
 gi|326408683|gb|ADZ65748.1| Ribonuclease III family [Brucella melitensis M28]
 gi|326538408|gb|ADZ86623.1| ribonuclease III [Brucella melitensis M5-90]
          Length = 234

 Score =  267 bits (683), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 119/220 (54%), Positives = 156/220 (70%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S LE+R G+ F N   LE+ALTHSS+    + +YERLEFLGDR+LGL ++ +LF  F  A
Sbjct: 9   SILEERTGHRFLNLKRLERALTHSSVQAPARANYERLEFLGDRVLGLTVAEMLFEAFPEA 68

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELSVR N+LV+AETC+ +A E+ LA  I   SD++      + +++ADVVE+LIA +
Sbjct: 69  SEGELSVRLNALVNAETCAAIADEIGLADLIHTGSDIKSLNDKRLLNVRADVVEALIATI 128

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           YLDGG+E A +F+ +YWK+R+L++G  RRDAKTELQEWAH +  V P Y +  RSGPDHD
Sbjct: 129 YLDGGLEAARSFIQRYWKKRSLETGAARRDAKTELQEWAHQQGNVHPVYAILSRSGPDHD 188

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           P F V V + G AP +G   SKR AEQ AA  +L REG+W
Sbjct: 189 PLFLVEVTVKGFAPEKGEGRSKRIAEQSAAEAMLYREGVW 228


>gi|289423974|ref|ZP_06425766.1| ribonuclease III [Peptostreptococcus anaerobius 653-L]
 gi|289155610|gb|EFD04283.1| ribonuclease III [Peptostreptococcus anaerobius 653-L]
          Length = 236

 Score =  267 bits (683), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 82/225 (36%), Positives = 126/225 (56%), Gaps = 5/225 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLFN 61
            + S+ EK+IGY F ++  ++ ALTHSS ++ ++E    ERLEFLGD +LGL++S  LF+
Sbjct: 10  EKISSFEKKIGYIFNDKENIQVALTHSSFANEHKEYKYNERLEFLGDSVLGLVVSDYLFS 69

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
                 EG+L+    ++V  E+ S VAR+L+L  ++ + +  R+   S   SI AD  E+
Sbjct: 70  VRTDLPEGQLTKFRANVVCEESLSVVARKLNLGEYLLLGNGERQSGGSDRDSILADATEA 129

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           +IAA+Y+DGG + A  F+    +    K+  G   RD KT LQE   +K G    Y++  
Sbjct: 130 VIAAIYIDGGFDKAKEFIMYNLRDVIAKTIDGNIFRDYKTILQEVIQSKNG-RISYRLVQ 188

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             GPDHD  F + V         G+  +K+ AE+ AA   L+  G
Sbjct: 189 EKGPDHDKVFEMEVRSGNKVLGFGVGKNKKDAEKEAAKNALENMG 233


>gi|24372926|ref|NP_716968.1| ribonuclease III [Shewanella oneidensis MR-1]
 gi|81462673|sp|Q8EH81|RNC_SHEON RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|24347062|gb|AAN54413.1|AE015579_2 ribonuclease III [Shewanella oneidensis MR-1]
          Length = 226

 Score =  267 bits (683), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 82/225 (36%), Positives = 125/225 (55%), Gaps = 7/225 (3%)

Query: 1   MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  ++    L + +GY F N  LL +ALTH S ++ +    ERLEFLGD IL ++IS  L
Sbjct: 1   MEPIKNLPRLCRTLGYEFKNLDLLTQALTHRSAANKH---NERLEFLGDSILSIVISDAL 57

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           ++ F  A EG+LS    +LV  +T + +A+   L  ++ +     K       SI AD V
Sbjct: 58  YHQFPKATEGDLSRMRATLVRGDTLTLIAQAFKLGDYLFLGPGELKSGGFRRESILADAV 117

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD  +EV    +  ++ +R   ++ G  ++DAKT LQE+        P+Y+V
Sbjct: 118 EAIIGAIYLDSDLEVCRQLLLNWYAERLAEIQPGINQKDAKTLLQEYLQGLKKPLPDYQV 177

Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLK 221
               G  HD  FTV   I  L+ +  G+  S+R AEQ+AAA+VL+
Sbjct: 178 INIEGDAHDQTFTVECRIDDLSQSVIGVASSRRKAEQIAAAQVLE 222


>gi|16803845|ref|NP_465330.1| ribonuclease III [Listeria monocytogenes EGD-e]
 gi|224501394|ref|ZP_03669701.1| ribonuclease III [Listeria monocytogenes FSL R2-561]
 gi|22654060|sp|Q8Y691|RNC_LISMO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|16411259|emb|CAC99883.1| rncS [Listeria monocytogenes EGD-e]
          Length = 229

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 113/224 (50%), Gaps = 5/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++  L++ +G+ F N  LL++A THSS  + ++    +  ERLEFLGD +L L +S  LF
Sbjct: 3   QWEELQESVGFDFKNVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N +    EG ++    ++V   +  + A  +  + ++R+     K       ++ ADV E
Sbjct: 63  NKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTF 179
           S I ALYLD GI+   TF+++    +       +  D KT+LQE       V  EY +  
Sbjct: 123 SFIGALYLDNGIDKVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIVQRDRDVLIEYDILG 182

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +GP H+  F   V ++G    +G   +K+ AEQ AA   + + 
Sbjct: 183 ETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINKL 226


>gi|113971183|ref|YP_734976.1| ribonuclease III [Shewanella sp. MR-4]
 gi|122943634|sp|Q0HG98|RNC_SHESM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|113885867|gb|ABI39919.1| RNAse III [Shewanella sp. MR-4]
          Length = 226

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 82/225 (36%), Positives = 125/225 (55%), Gaps = 7/225 (3%)

Query: 1   MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  ++    L + +GY F N  LL +ALTH S ++ +    ERLEFLGD IL ++IS  L
Sbjct: 1   MEPIKNLPRLCRTLGYEFKNIELLTQALTHRSAANKH---NERLEFLGDSILSIVISDAL 57

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           ++ F  A EG+LS    +LV  +T + +A+   L  ++ +     K       SI AD V
Sbjct: 58  YHQFPKATEGDLSRMRATLVRGDTLTLIAKAFKLGDYLFLGPGELKSGGFRRESILADAV 117

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD  +EV    +  ++ +R   ++ G  ++DAKT LQE+        P+Y+V
Sbjct: 118 EAIIGAIYLDSDLEVCRKLLLHWYAERLAEIQPGVNQKDAKTLLQEYLQGLKKPLPDYQV 177

Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLK 221
               G  HD  FTV   I  L+ +  G+  S+R AEQ+AAA+VL+
Sbjct: 178 INIEGDAHDQTFTVECRIDDLSESVIGVASSRRKAEQIAAAQVLE 222


>gi|313623280|gb|EFR93523.1| ribonuclease III [Listeria innocua FSL J1-023]
          Length = 229

 Score =  266 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 113/224 (50%), Gaps = 5/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++  L++ +G+ F N  LL++A THSS  + ++    +  ERLEFLGD +L L +S  LF
Sbjct: 3   QWEELQESVGFDFQNVELLQQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N +    EG ++    ++V   +  + A  +  + ++R+     K       ++ ADV E
Sbjct: 63  NKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTF 179
           S I ALYLD GI+   TF+++    +       +  D KT+LQE       V  EY +  
Sbjct: 123 SFIGALYLDNGIDKVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIVQRDRDVLIEYDILG 182

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +GP H+  F   V ++G    +G   +K+ AEQ AA   + + 
Sbjct: 183 ETGPAHNKSFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226


>gi|311693675|gb|ADP96548.1| ribonuclease 3 [marine bacterium HP15]
          Length = 229

 Score =  266 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 81/231 (35%), Positives = 118/231 (51%), Gaps = 7/231 (3%)

Query: 1   MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           MS+      L++RIGY F +   L  ALTH S  +   ++ ERLEFLGD I+ ++I+  L
Sbjct: 1   MSSQPDLDQLQRRIGYQFKSPERLLLALTHRSYGN---QNNERLEFLGDSIVNMVIAEYL 57

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F HF+ A+EG+LS     +V   T +++ RE  L +++R+ S   K       SI AD V
Sbjct: 58  FLHFEKAREGQLSRLRARMVKGVTLAEIGREFQLGTYLRLGSGELKSGGFRRESILADAV 117

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           ES+I A+YLD         V ++++ R   L     ++D KT LQE+  ++    P Y V
Sbjct: 118 ESIIGAIYLDSDFHTCREQVLRWFEHRLEKLDLQDTQKDPKTRLQEYLQSRQFPLPRYDV 177

Query: 178 TFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGIWT 227
               G  H+  F V   +  L     G   S+R AEQ AA   LK  G+  
Sbjct: 178 ISVDGEAHNQTFHVSCALPSLDRKTTGTGSSRRVAEQQAARNALKELGVEN 228


>gi|251772101|gb|EES52671.1| Ribonuclease III [Leptospirillum ferrodiazotrophum]
          Length = 254

 Score =  266 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 122/225 (54%), Gaps = 7/225 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-----SYERLEFLGDRILGLLISTLL 59
               LE+R+GY F++   LE+A  H S ++  ++       ERLEFLGD +LGL+++  L
Sbjct: 10  NLPVLEERLGYRFSSLERLEEATIHKSFTNETKKGGVRRDNERLEFLGDTVLGLVVAEYL 69

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
              +  + EG LS     +VS  + +Q+AR + L  ++ +             SI +D +
Sbjct: 70  MRLWPDSPEGVLSKLKGRIVSEPSLAQIARNIGLGRYLLIGRGEEMTQGREKNSILSDAL 129

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E++IAA+Y DGG++ A  F+ + +++   ++  G+   D KT+LQE+   +    P+Y +
Sbjct: 130 EAVIAAIYQDGGLDAARQFILREFRELFESVSRGESVADYKTQLQEYCQRELETLPQYVI 189

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           T +SGPDH   F V V I      +G   SK+ AEQ AA   L+R
Sbjct: 190 TGQSGPDHQKVFEVAVRIRDKNWGEGQGHSKKEAEQKAAKSALER 234


>gi|89094542|ref|ZP_01167480.1| ribonuclease III [Oceanospirillum sp. MED92]
 gi|89081141|gb|EAR60375.1| ribonuclease III [Oceanospirillum sp. MED92]
          Length = 226

 Score =  266 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 88/218 (40%), Positives = 126/218 (57%), Gaps = 6/218 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            + L +RIG+ F++ SL E ALTH S     +++ ERLEFLGD IL  +I+  L+  F  
Sbjct: 5   VNELARRIGHDFSDLSLFELALTHRSCG---KKNNERLEFLGDSILNFVIADDLYARFPK 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           AKEGELS     +V   T S+VAREL L  ++R+ S   K       SI AD VE++I A
Sbjct: 62  AKEGELSRLRARMVKGVTLSEVARELGLGDYLRLGSGELKSGGFRRDSILADAVEAIIGA 121

Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YLD  ++ A  ++ K+++QR   L   +  +D+KT LQE+  ++    PEY++T   G 
Sbjct: 122 IYLDSDMDTARAYILKWFEQRLSTLDLNESLKDSKTRLQEFLQSRRLALPEYELTNVEGE 181

Query: 184 DHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVL 220
            H   F +   +SGL  PA+G   S+R AEQ AA   L
Sbjct: 182 AHAQTFYIDCRVSGLNNPAKGTGSSRRQAEQEAAKNAL 219


>gi|303242104|ref|ZP_07328595.1| ribonuclease III [Acetivibrio cellulolyticus CD2]
 gi|302590398|gb|EFL60155.1| ribonuclease III [Acetivibrio cellulolyticus CD2]
          Length = 235

 Score =  266 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 112/224 (50%), Gaps = 6/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60
              + EK I Y F ++  L  ALTHSS ++ Y+     S ERLEFLGD +L ++IS  ++
Sbjct: 10  NIESFEKIIKYEFKDKDNLVLALTHSSYANEYKSEKLISNERLEFLGDSVLSVVISENIY 69

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            ++    EGE++    ++V   +    A  L +  ++ +            TSI +D +E
Sbjct: 70  KNYSHLSEGEMTKFRANVVCEASLENCANNLSIGQYLLLGKGEEITGGRTRTSILSDAME 129

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI A+YLDGG+E A +FV    ++    S  G+   D KT+LQE           Y++ 
Sbjct: 130 ALIGAIYLDGGLESAKSFVLSQMEKFIDDSIKGEIFMDYKTQLQEIIQKNNDQKVTYEII 189

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              GPDH   F   V++       G   +K+ AEQ+AA   LK+
Sbjct: 190 DEKGPDHSKIFVSQVKLDDKVIGVGEGRTKKEAEQMAAKTSLKK 233


>gi|229541120|ref|ZP_04430180.1| ribonuclease III [Bacillus coagulans 36D1]
 gi|229325540|gb|EEN91215.1| ribonuclease III [Bacillus coagulans 36D1]
          Length = 246

 Score =  266 bits (681), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 109/224 (48%), Gaps = 5/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60
           ++  L++++G  F + +LL++A THSS  + + E      ERLEFLGD +L L +S  LF
Sbjct: 15  KFGKLQEQLGIHFQDVNLLKQAFTHSSYVNEHPEKRRHDNERLEFLGDAVLELTVSHYLF 74

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N F S  EGE++    S+V   +    A EL    +I +             ++ ADV E
Sbjct: 75  NRFPSMNEGEMTKLRASVVCEPSLVIFANELHFGEYILLGKGEEMTGGRTRPALLADVFE 134

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTF 179
           + I ALYLD G++   + ++K    +  +       D K++LQE+   +     EY +  
Sbjct: 135 AFIGALYLDKGLKAVVSLLEKVVFPKIDEGLFSSTADYKSKLQEYVQKRTSGVLEYTILD 194

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             GP HD  F   V ++  A   G   SK+ AEQ AA   L   
Sbjct: 195 ERGPAHDKEFVSSVSLNNKALGTGKGRSKKEAEQQAAQTALSNL 238


>gi|116873240|ref|YP_850021.1| ribonuclease III [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|123466444|sp|A0AJR0|RNC_LISW6 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|116742118|emb|CAK21242.1| ribonuclease III [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 229

 Score =  266 bits (681), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 118/225 (52%), Gaps = 7/225 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++  L++ +G+ F +  LL++A THSS  + ++    +  ERLEFLGD +L L +S  LF
Sbjct: 3   QWEELQESVGFDFQDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSNYLF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N +    EG ++    ++V   +  + A  +  + +IR+     K       ++ ADV E
Sbjct: 63  NKYPDMAEGHMTKMRAAIVCEPSLVEFAEAIHFSKYIRLGKGEEKAGGRTRPALLADVFE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178
           S I ALYLD GI+   TF+++    + + +G++ +  D KT+LQE       V  EY + 
Sbjct: 123 SFIGALYLDNGIDKVVTFLERVIFPK-IDAGEYLQTVDYKTQLQEIVQRDRDVLIEYDIL 181

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +GP H+  F   V ++G    +G   +K+ AEQ AA   + + 
Sbjct: 182 GETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226


>gi|319789592|ref|YP_004151225.1| ribonuclease III [Thermovibrio ammonificans HB-1]
 gi|317114094|gb|ADU96584.1| ribonuclease III [Thermovibrio ammonificans HB-1]
          Length = 236

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 85/228 (37%), Positives = 126/228 (55%), Gaps = 10/228 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNH 62
           +   LE+ +GY+F ++ LL++AL H S +      E+YE LEFLGD ++GL++S  L   
Sbjct: 6   KLVALERLLGYSFKDKELLKRALIHRSFAFEKDTGENYEVLEFLGDAVIGLIVSEELIKR 65

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EGELS     LVS  + S++AR ++L  F+ +    ++       SI  DV ES+
Sbjct: 66  FPEKSEGELSQIRAFLVSEPSLSKLARTINLGQFLYLGKGEKRTGGREKDSILCDVFESV 125

Query: 123 IAALYLDGGIEVAG-----TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
             ALYLD G E A       F+ K W    L++    +D K+ LQE    ++ V P+Y+V
Sbjct: 126 FGALYLDAGFEKAKEIFKNKFLKKLW--EILENAVTYKDFKSYLQEITQREYKVLPKYRV 183

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
               GP+HD  FTV  +++ +    G   SK+AAEQ AA E+LK  G+
Sbjct: 184 VKAEGPEHDKTFTVECQVNDIT-TYGKGKSKKAAEQDAAREMLKALGV 230


>gi|222085390|ref|YP_002543920.1| ribonuclease III [Agrobacterium radiobacter K84]
 gi|254807233|sp|B9JC73|RNC_AGRRK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|221722838|gb|ACM25994.1| ribonuclease III [Agrobacterium radiobacter K84]
          Length = 239

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 137/219 (62%), Positives = 166/219 (75%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           TLE  IG+AF  +  L+ ALTH+S       +YERLEFLGDR+LGL I+ LLF  F +A 
Sbjct: 14  TLEAAIGHAFVEKERLDWALTHASARTHKAGNYERLEFLGDRVLGLCIAELLFRTFGTAT 73

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EGELSVR N LVSAETC+ VA E+ L  FIR  +D++K     M +++ADVVESLIAALY
Sbjct: 74  EGELSVRLNQLVSAETCAAVADEMQLHLFIRTGADVKKLTGKRMLNVRADVVESLIAALY 133

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           LDGG+EVA  F+ +YW+ RA++    RRDAKTELQEWAHAKFGVTP Y+V  RSGPDHDP
Sbjct: 134 LDGGLEVARKFILRYWEGRAVRPDGARRDAKTELQEWAHAKFGVTPVYRVDDRSGPDHDP 193

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           RFTV VE++G AP  G++ SKRAAEQVAA  +L+REGIW
Sbjct: 194 RFTVTVEVAGAAPETGIERSKRAAEQVAATRILEREGIW 232


>gi|306833964|ref|ZP_07467088.1| ribonuclease III [Streptococcus bovis ATCC 700338]
 gi|304423965|gb|EFM27107.1| ribonuclease III [Streptococcus bovis ATCC 700338]
          Length = 228

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 76/225 (33%), Positives = 118/225 (52%), Gaps = 6/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M AL  + L++  G  F +++LLE A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MQALD-TKLQQDFGIVFEDKTLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  +    EG+LS   + +V  E+ +  +R      FI++ +   K       +I  
Sbjct: 60  QYLFKKYPKKPEGDLSKMRSVIVREESLAGFSRYCGFDEFIKLGNGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + AL +D G+E    F+++    +  K   +  +D KT LQE       VT +Y
Sbjct: 120 DLFEAFLGALLMDQGVEAVNKFLNQVMIPQVEKGNFERVKDYKTTLQELLQGHGDVTIDY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +V+  SGP H   F V V ++  A +QG+  SK+ AEQ AA   L
Sbjct: 180 RVSNESGPAHAKVFEVTVYVNDKAKSQGIGKSKKLAEQDAAKNAL 224


>gi|300023749|ref|YP_003756360.1| ribonuclease III [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525570|gb|ADJ24039.1| ribonuclease III [Hyphomicrobium denitrificans ATCC 51888]
          Length = 235

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 95/226 (42%), Positives = 135/226 (59%), Gaps = 2/226 (0%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTL 58
           +   ++  LE ++G+ F +  LLE+ALTH+S+      +   ERLEF+GDR+LGL I+ +
Sbjct: 2   LRPRKFKELETKLGHRFKDPGLLERALTHASVRGGKIARFDNERLEFIGDRVLGLAIAEI 61

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L   +  A EGEL+ R+N LV  E C++VAR + L + + +S           T+I AD 
Sbjct: 62  LNQQYPEASEGELARRYNRLVRGEACAKVARNIGLGAHLILSESEADSGGRDKTTILADA 121

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
            E+L+ A+++D G E A   V K W++++    +   DAK+ LQEWA  +    P+Y V 
Sbjct: 122 AEALLGAVFIDVGFEKARAVVRKLWQEQSEPVPEVAVDAKSALQEWAQGQGLALPKYTVV 181

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            R GPDH PRFT  V I+G APAQG   SKR AEQ AA  +L REG
Sbjct: 182 SRKGPDHAPRFTAEVIIAGRAPAQGEGASKRIAEQAAATALLTREG 227


>gi|225025907|ref|ZP_03715099.1| hypothetical protein EUBHAL_00143 [Eubacterium hallii DSM 3353]
 gi|224956693|gb|EEG37902.1| hypothetical protein EUBHAL_00143 [Eubacterium hallii DSM 3353]
          Length = 232

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 82/227 (36%), Positives = 124/227 (54%), Gaps = 8/227 (3%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTL 58
             R+  LE++IGY F N+  L  A+THSS ++  +     + ERLEFLGD +L + IS  
Sbjct: 4   TERFKGLEEKIGYTFTNKRTLALAMTHSSYANEQRGRRKANNERLEFLGDAVLEVTISDY 63

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           +F  +    EG L+   +SLV   T +  AR+++L  ++ +S            SI +D 
Sbjct: 64  VFREYPGYNEGRLTKLRSSLVCEYTLAICARDVELGKYLLLSRGEDATGGRERDSILSDA 123

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
            E+LI A+YLDGG++ A TF+  +  +  ++      DAKT LQE   A      EY +T
Sbjct: 124 FEALIGAIYLDGGMDRARTFIHTHLLK-DVEDKSLFYDAKTILQEMVQAGPDPRLEYVLT 182

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE---VLKR 222
             +GPDH+  FTV  +I G   A G   +K+ AEQ+AA +   +LK+
Sbjct: 183 REAGPDHNKEFTVEAKIGGKTYAIGKGKTKKGAEQIAAYQTILLLKK 229


>gi|224500035|ref|ZP_03668384.1| ribonuclease III [Listeria monocytogenes Finland 1988]
 gi|254831594|ref|ZP_05236249.1| ribonuclease III [Listeria monocytogenes 10403S]
 gi|284802251|ref|YP_003414116.1| hypothetical protein LM5578_2007 [Listeria monocytogenes 08-5578]
 gi|284995393|ref|YP_003417161.1| hypothetical protein LM5923_1958 [Listeria monocytogenes 08-5923]
 gi|284057813|gb|ADB68754.1| hypothetical protein LM5578_2007 [Listeria monocytogenes 08-5578]
 gi|284060860|gb|ADB71799.1| hypothetical protein LM5923_1958 [Listeria monocytogenes 08-5923]
          Length = 229

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 113/224 (50%), Gaps = 5/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++  L++ +G+ F N  LL++A THSS  + ++    +  ERLEFLGD +L L +S  LF
Sbjct: 3   QWEELQESVGFDFKNVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N +    EG ++    ++V   +  + A  +  + ++R+     K       ++ ADV E
Sbjct: 63  NKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTF 179
           S I ALYLD GI+   TF+++    +       +  D KT+LQE       V  EY +  
Sbjct: 123 SFIGALYLDNGIDKVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIVQRDRDVLIEYDILG 182

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +GP H+  F   V ++G    +G   +K+ AEQ AA   + + 
Sbjct: 183 ETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226


>gi|47097388|ref|ZP_00234939.1| ribonuclease III [Listeria monocytogenes str. 1/2a F6854]
 gi|217964043|ref|YP_002349721.1| ribonuclease III [Listeria monocytogenes HCC23]
 gi|254829200|ref|ZP_05233887.1| ribonuclease III [Listeria monocytogenes FSL N3-165]
 gi|254899498|ref|ZP_05259422.1| ribonuclease III [Listeria monocytogenes J0161]
 gi|254912363|ref|ZP_05262375.1| ribonuclease III [Listeria monocytogenes J2818]
 gi|254936690|ref|ZP_05268387.1| ribonuclease III [Listeria monocytogenes F6900]
 gi|290893065|ref|ZP_06556054.1| ribonuclease III [Listeria monocytogenes FSL J2-071]
 gi|254807893|sp|B8DDU8|RNC_LISMH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|47014236|gb|EAL05218.1| ribonuclease III [Listeria monocytogenes str. 1/2a F6854]
 gi|217333313|gb|ACK39107.1| ribonuclease III [Listeria monocytogenes HCC23]
 gi|258601611|gb|EEW14936.1| ribonuclease III [Listeria monocytogenes FSL N3-165]
 gi|258609286|gb|EEW21894.1| ribonuclease III [Listeria monocytogenes F6900]
 gi|290557425|gb|EFD90950.1| ribonuclease III [Listeria monocytogenes FSL J2-071]
 gi|293590344|gb|EFF98678.1| ribonuclease III [Listeria monocytogenes J2818]
 gi|307571387|emb|CAR84566.1| ribonuclease III [Listeria monocytogenes L99]
 gi|313608181|gb|EFR84216.1| ribonuclease III [Listeria monocytogenes FSL F2-208]
          Length = 229

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 67/224 (29%), Positives = 113/224 (50%), Gaps = 5/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++  L++ +G+ F +  LL++A THSS  + ++    +  ERLEFLGD +L L +S  LF
Sbjct: 3   QWEELQESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N +    EG ++    ++V   +  + A  +  + ++R+     K       ++ ADV E
Sbjct: 63  NKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTF 179
           S I ALYLD GI+   TF+++    +       +  D KT+LQE       V  EY +  
Sbjct: 123 SFIGALYLDNGIDKVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIVQRDRDVLIEYDILG 182

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +GP H+  F   V ++G    +G   +K+ AEQ AA   + + 
Sbjct: 183 ETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226


>gi|114048421|ref|YP_738971.1| ribonuclease III [Shewanella sp. MR-7]
 gi|122944480|sp|Q0HSJ1|RNC_SHESR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|113889863|gb|ABI43914.1| RNAse III [Shewanella sp. MR-7]
          Length = 226

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 82/225 (36%), Positives = 125/225 (55%), Gaps = 7/225 (3%)

Query: 1   MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  ++    L + +GY F N  LL +ALTH S ++ +    ERLEFLGD IL ++IS  L
Sbjct: 1   MEPIKNLPRLCRTLGYEFKNLELLTQALTHRSAANKH---NERLEFLGDSILSIVISDAL 57

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           ++ F  A EG+LS    +LV  +T + +A+   L  ++ +     K       SI AD V
Sbjct: 58  YHQFPKATEGDLSRMRATLVRGDTLTLIAKAFKLGDYLFLGPGELKSGGFRRESILADAV 117

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD  +EV    +  ++ +R   ++ G  ++DAKT LQE+        P+Y+V
Sbjct: 118 EAIIGAIYLDSDLEVCRKLLLHWYAERLAEIQPGVNQKDAKTLLQEYLQGLKKPLPDYQV 177

Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLK 221
               G  HD  FTV   I  L+ +  G+  S+R AEQ+AAA+VL+
Sbjct: 178 INIEGDAHDQTFTVECRIDDLSESVIGVASSRRKAEQIAAAQVLE 222


>gi|254360744|ref|ZP_04976892.1| ribonuclease III [Mannheimia haemolytica PHL213]
 gi|153091314|gb|EDN73288.1| ribonuclease III [Mannheimia haemolytica PHL213]
          Length = 224

 Score =  266 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 76/220 (34%), Positives = 117/220 (53%), Gaps = 6/220 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++   L+K++GY F N   L +ALTH S +    ++ ERLEFLGD IL   I  +L++ F
Sbjct: 1   MQLERLQKKLGYQFHNLDYLIQALTHRSAA---TKNNERLEFLGDSILNFTIGKVLYDKF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EGELS    +LV  +T + +AR+ DL  ++++     K       SI +D VE++I
Sbjct: 58  PKANEGELSRMRATLVREQTLAIIARKFDLGDYLKLGPGELKSGGFRRESILSDCVEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+YLD  +  A   V+ ++    + +  G  ++D KT LQE+   +    PEY V    
Sbjct: 118 AAIYLDQDMAKAMEKVEDWYSDLLKDISPGDSQKDPKTRLQEFLQGRKLPLPEYDVLDIK 177

Query: 182 GPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVL 220
           G  H+  F V  ++        G+  S+R AEQ AA + L
Sbjct: 178 GEAHNQTFRVTCKVINVEEVFIGIGTSRRKAEQNAAEKAL 217


>gi|187933552|ref|YP_001885438.1| ribonuclease III [Clostridium botulinum B str. Eklund 17B]
 gi|238691613|sp|B2TJ22|RNC_CLOBB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|187721705|gb|ACD22926.1| ribonuclease III [Clostridium botulinum B str. Eklund 17B]
          Length = 232

 Score =  266 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 82/227 (36%), Positives = 125/227 (55%), Gaps = 4/227 (1%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTL 58
           M+  +++ +E R+G  F N SL++ ALTHSS  + ++++   ERLEFLGD +L L I+  
Sbjct: 1   MNRYKFNDIENRLGVYFNNPSLIKTALTHSSFGNQFKDAKYNERLEFLGDSVLQLCITEY 60

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LFN F    EGEL+   + +V   +  ++A++L L  +IR+S            SIQAD 
Sbjct: 61  LFNKFKDKSEGELTKIRSLIVCENSLYEIAKKLSLGEYIRMSKGEELTGGRERMSIQADA 120

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYK 176
           VE++IAA+YLD GI     F+  ++++   K+   +   D KT+LQE       +  +Y+
Sbjct: 121 VEAVIAAVYLDKGIGFVNDFILLHFEEMINKAINNEIVLDFKTKLQELLQKDGEILIQYE 180

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +    GP H  +F   V I+      G   SK+ AEQ AA E LKR 
Sbjct: 181 LVKYEGPPHRRKFFTNVIINEKVMGIGEGYSKKEAEQNAAKEALKRL 227


>gi|239826585|ref|YP_002949209.1| ribonuclease III [Geobacillus sp. WCH70]
 gi|259491901|sp|C5D8T6|RNC_GEOSW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|239806878|gb|ACS23943.1| ribonuclease III [Geobacillus sp. WCH70]
          Length = 246

 Score =  266 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 69/224 (30%), Positives = 105/224 (46%), Gaps = 5/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++  L+K+IG  F N  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF
Sbjct: 17  KFKELQKKIGIFFTNEKLLIQAFTHSSYVNEHRRRPHEDNERLEFLGDAVLELTVSQYLF 76

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EGEL+    ++V   +  + A  L     + +             ++ ADV E
Sbjct: 77  KKFPHMSEGELTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFE 136

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + I ALYLD G++    F+ +    +  +       D K++LQE          EY +  
Sbjct: 137 AFIGALYLDQGMDAVMQFLGQTIFPKIDEGAFSHVMDFKSQLQELVQRDGIGVLEYSILE 196

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             GP H+  F   V ++G     G+  SK+ AEQ AA   L++ 
Sbjct: 197 EKGPAHNKEFVSRVSLNGQELGIGVGKSKKEAEQHAAQMALQKL 240


>gi|121602768|ref|YP_988789.1| ribonuclease III [Bartonella bacilliformis KC583]
 gi|189043293|sp|A1US36|RNC_BARBK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|120614945|gb|ABM45546.1| ribonuclease III [Bartonella bacilliformis KC583]
          Length = 235

 Score =  266 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 112/226 (49%), Positives = 151/226 (66%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M       L+K  G++F N  LL+KALTHSS+  S Q +YERLEFLGDR+LGLL++ +L+
Sbjct: 1   MKHQTIDQLKKLTGHSFKNEDLLKKALTHSSVQRSEQGNYERLEFLGDRVLGLLVAEMLY 60

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELSVR N LV+A+TC+ +ARE+ L   + V  +++      + ++ ADVVE
Sbjct: 61  QFFPQASEGELSVRLNGLVNAQTCADIAREIGLPDMVHVGCEMKNLEGRRLANMHADVVE 120

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +LIA +YLDGG++    F+ +YW+ RA K    RRDAKTELQEWAH + GV P+Y+V  R
Sbjct: 121 ALIAVIYLDGGLKSVRPFIQRYWQDRAKKIDASRRDAKTELQEWAHTQNGVQPQYRVIKR 180

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
            G DHDP F V V + G     G   SKR AE+ AA ++L+REG+W
Sbjct: 181 CGLDHDPVFVVEVSVPGFVSEVGEGGSKRHAERAAAEKILRREGMW 226


>gi|115525028|ref|YP_781939.1| ribonuclease III [Rhodopseudomonas palustris BisA53]
 gi|115518975|gb|ABJ06959.1| RNAse III [Rhodopseudomonas palustris BisA53]
          Length = 268

 Score =  266 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 101/217 (46%), Positives = 133/217 (61%), Gaps = 3/217 (1%)

Query: 12  RIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           RIG+ F +  LL  A TH S    SHS  +SY+R+EFLGD +LGL++S +L+  F  A E
Sbjct: 49  RIGHDFKDAGLLATAFTHVSALKSSHSRADSYQRMEFLGDHVLGLVVSDMLYRAFPKADE 108

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELS R   LV  ETC+ VA  L L   I++ +           S+  D+ E++I A+YL
Sbjct: 109 GELSKRLADLVRKETCADVALALGLLDGIKLGTVGAGAGARLRKSVLGDICEAVIGAVYL 168

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           DGG   A  FV+  W +R  K  +  RD KT LQEWA  K   TP Y+   R+GPDHDP+
Sbjct: 169 DGGYPAAAKFVEANWTERMRKPTRSLRDPKTVLQEWAQGKGLPTPAYREVERTGPDHDPK 228

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           F V VE+ GL PA+G+  SKRAAE+ AA+ +L REG+
Sbjct: 229 FRVRVELPGLEPAEGIGGSKRAAEKEAASAMLAREGV 265


>gi|167771632|ref|ZP_02443685.1| hypothetical protein ANACOL_03004 [Anaerotruncus colihominis DSM
           17241]
 gi|167666272|gb|EDS10402.1| hypothetical protein ANACOL_03004 [Anaerotruncus colihominis DSM
           17241]
          Length = 232

 Score =  265 bits (679), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 82/222 (36%), Positives = 114/222 (51%), Gaps = 5/222 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTLLFNHF 63
           S LE RIGY F N   L+ ALTHSS ++  +++    ER EFLGD +L +++S  LF+ +
Sbjct: 11  SALEGRIGYTFQNGRYLDIALTHSSYANEVKKNISSNERQEFLGDAVLSIVVSDYLFHTY 70

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+L+    +LV  ++  + ++ L L  F+++             SI AD  E+LI
Sbjct: 71  -HLAEGDLTKLRAALVCEKSLWEFSQALGLGDFLKLGRGEEMMGGRTRPSILADAFEALI 129

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           AA+YLDGGIE A  FV  Y              D KT LQE           Y +   SG
Sbjct: 130 AAIYLDGGIEPARRFVLGYIVDALENRDDLAFSDYKTMLQEIIQKNPEERLSYVLVNESG 189

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           PDH+ +F V V ++      G   SK++AEQ AA E LK  G
Sbjct: 190 PDHNKKFLVEVRLNSNVIGVGCGGSKKSAEQAAAREALKLMG 231


>gi|251791907|ref|YP_003006627.1| ribonuclease III [Aggregatibacter aphrophilus NJ8700]
 gi|247533294|gb|ACS96540.1| ribonuclease III [Aggregatibacter aphrophilus NJ8700]
          Length = 226

 Score =  265 bits (679), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 78/228 (34%), Positives = 115/228 (50%), Gaps = 6/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M       L+++I Y F +  LL++ALTH S  H +    ERLEFLGD IL L I+  LF
Sbjct: 1   MRTDNLDRLQRKIDYQFQDTGLLKQALTHRSAGHKH---NERLEFLGDAILNLTIAEALF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EGELS    +LV   T + +AR+  L  ++ +     K       SI AD VE
Sbjct: 58  HQFPKCNEGELSRMRATLVREPTLAILARDFQLGDYLSLGQGELKSGGFRRESILADCVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+ LD  +  A   V ++++   + ++ G  ++DAKT LQE+        P Y + 
Sbjct: 118 AIIGAISLDSNLTNATEIVTRWYQPLLKDIQPGDNQKDAKTRLQEYLQGNRLPVPTYNIV 177

Query: 179 FRSGPDHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
              G  H+  FTV   I +      G   S+R AEQ AA ++L+   I
Sbjct: 178 NIQGEAHNQLFTVECSIQNNDRTFIGKGSSRRKAEQAAAEQILQELKI 225


>gi|319939366|ref|ZP_08013726.1| ribonuclease 3 [Streptococcus anginosus 1_2_62CV]
 gi|319811352|gb|EFW07647.1| ribonuclease 3 [Streptococcus anginosus 1_2_62CV]
          Length = 232

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 112/224 (50%), Gaps = 7/224 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +  L ++ G  F +  LLE A TH+S ++ ++       ERLEFLGD +L LLIS  L+ 
Sbjct: 5   HKVLSQQFGIVFQDEKLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLISEYLYK 64

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +    EG+LS   +++V  E+ +  +R+     FI++     K       +I  D+ E+
Sbjct: 65  KYPKKPEGDLSKLRSTIVREESLAGFSRDCQFDQFIKLGRGEEKSGGRNRDTILGDLFEA 124

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179
            + AL LD G+E    F+ +    + ++ G F +  D KT+LQE       V   Y+V  
Sbjct: 125 FLGALLLDKGVEAVKNFLYQVMIPK-VEVGDFEQVVDYKTKLQELLQVNGDVEIVYQVIS 183

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            SGP H   F V V + G    QG   SK+ AEQ AA    ++E
Sbjct: 184 ESGPAHAKEFAVAVSVDGRTVGQGQGRSKKLAEQEAAKNAFEKE 227


>gi|297530632|ref|YP_003671907.1| ribonuclease III [Geobacillus sp. C56-T3]
 gi|297253884|gb|ADI27330.1| ribonuclease III [Geobacillus sp. C56-T3]
          Length = 246

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 70/222 (31%), Positives = 106/222 (47%), Gaps = 5/222 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++  L+K+IG  F N  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF
Sbjct: 17  KFQELQKKIGITFRNEKLLIQAFTHSSYVNEHRRRLHEDNERLEFLGDAVLELTVSQYLF 76

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG+L+    ++V   +  + A  L     + +             ++ ADV E
Sbjct: 77  QKFPHMSEGQLTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFE 136

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + I ALYLD G++    F++K    +  +       D K++LQE        T EY +  
Sbjct: 137 AFIGALYLDQGMDAVIRFLEKTMFPKIDEGAFSHVMDFKSQLQELVQRDGSGTLEYAILE 196

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             GP H+  F   V ++G     G+  SK+ AEQ AA   L+
Sbjct: 197 EKGPAHNKEFVARVALNGQELGIGVGRSKKEAEQHAAQMALE 238


>gi|228992577|ref|ZP_04152504.1| Ribonuclease 3 [Bacillus pseudomycoides DSM 12442]
 gi|228998625|ref|ZP_04158212.1| Ribonuclease 3 [Bacillus mycoides Rock3-17]
 gi|229006125|ref|ZP_04163813.1| Ribonuclease 3 [Bacillus mycoides Rock1-4]
 gi|228755201|gb|EEM04558.1| Ribonuclease 3 [Bacillus mycoides Rock1-4]
 gi|228761093|gb|EEM10052.1| Ribonuclease 3 [Bacillus mycoides Rock3-17]
 gi|228767211|gb|EEM15847.1| Ribonuclease 3 [Bacillus pseudomycoides DSM 12442]
          Length = 245

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 110/223 (49%), Gaps = 5/223 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +   +++IG  F +  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 19  FKMFQQKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A EL   + + +             ++ ADV E+
Sbjct: 79  KYPTMSEGELTKLRAAVVCEPSLVRFANELSFGNLVLLGKGEEMTGGRERPALLADVFEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            I ALYLD G+E    F+ +    +  +       D K++LQE          EY++   
Sbjct: 139 FIGALYLDQGLETVWEFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQE 198

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            GP H+  F   V ++G+A   G   SK+ AEQ AA+E LK+ 
Sbjct: 199 KGPAHNREFVSRVTLNGVALGLGSGKSKKEAEQQAASEALKKL 241


>gi|291563451|emb|CBL42267.1| RNAse III [butyrate-producing bacterium SS3/4]
          Length = 226

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 74/218 (33%), Positives = 116/218 (53%), Gaps = 5/218 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58
             +   L++ IGY F +  LL  ALTHSS ++          ERLEFLGD +L ++ S  
Sbjct: 2   KEKLEKLQEMIGYQFKDPGLLTHALTHSSYANEKHWDKTRCNERLEFLGDAVLEVISSDF 61

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF+ ++S  EGE++    SLV   T +  A  + L  ++ +             S+ +D 
Sbjct: 62  LFHTYESMPEGEMTKLRASLVCEPTLAYCADVIPLGDYLLLGKGEDLTGGRKRPSVVSDA 121

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +E++I A+YLDGG+  A  F+ ++     ++  +   D+KT LQE   AK+  T  Y++ 
Sbjct: 122 MEAVIGAIYLDGGLANAKEFIHRFIL-NDIEHKQLFYDSKTILQEMVQAKYKETLVYELL 180

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
              GPDH+  F V V+I      +G+  +K+AAEQVAA
Sbjct: 181 KEEGPDHNKSFEVCVKIGDEEIGRGLGRTKKAAEQVAA 218


>gi|288905744|ref|YP_003430966.1| Ribonuclease III [Streptococcus gallolyticus UCN34]
 gi|306831841|ref|ZP_07464997.1| ribonuclease III [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325978776|ref|YP_004288492.1| ribonuclease III [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
 gi|288732470|emb|CBI14042.1| Ribonuclease III [Streptococcus gallolyticus UCN34]
 gi|304426039|gb|EFM29155.1| ribonuclease III [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325178704|emb|CBZ48748.1| ribonuclease III [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
          Length = 228

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 76/225 (33%), Positives = 118/225 (52%), Gaps = 6/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M AL  + L++  G  F +++LLE A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MQALD-TKLQRDFGIVFEDKTLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  +    EG+LS   + +V  E+ +  +R      FI++ +   K       +I  
Sbjct: 60  QYLFKKYPKKPEGDLSKMRSVIVREESLAGFSRYCGFDEFIKLGNGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + AL +D G+E    F+++    +  K   +  +D KT LQE       VT +Y
Sbjct: 120 DLFEAFLGALLMDQGVEAVNKFLNQVMIPQVEKGNFERVKDYKTTLQELLQGHGDVTIDY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +V+  SGP H   F V V ++  A +QG+  SK+ AEQ AA   L
Sbjct: 180 RVSNESGPAHAKVFEVTVYVNDEAKSQGIGRSKKLAEQDAAKNAL 224


>gi|147678073|ref|YP_001212288.1| ribonuclease III [Pelotomaculum thermopropionicum SI]
 gi|189043329|sp|A5D1H6|RNC_PELTS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|146274170|dbj|BAF59919.1| dsRNA-specific ribonuclease [Pelotomaculum thermopropionicum SI]
          Length = 241

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 79/224 (35%), Positives = 118/224 (52%), Gaps = 6/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           + + L+ R+G A+ +  LL +ALTHSS ++  +    E+ +RLEFLGD +L L +S  L+
Sbjct: 7   KLTLLKNRLGIAWRDEGLLTRALTHSSFTYENRQNGLENNQRLEFLGDAVLELAVSDYLY 66

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                  EG+L+    S+V   + ++VAREL+L + + +     +       SI AD  E
Sbjct: 67  RSKPEMDEGDLTKLRASVVCEPSLARVARELELGTCLYMGKGEERSGGRDRPSILADAFE 126

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +L+ A+YLD G+E A     KY       +  G+  RD KTELQE    + G   +Y + 
Sbjct: 127 ALLGAVYLDQGLEKAAGLAIKYLAPLIGDVLEGRLERDYKTELQELVQQRGGEQVQYVIL 186

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              GPDH   FT  V   G+   QG   SK+ AEQ AA + L +
Sbjct: 187 KEEGPDHHKSFTAGVLYRGVLVGQGTGRSKKEAEQQAAKKALMK 230


>gi|169830829|ref|YP_001716811.1| ribonuclease III [Candidatus Desulforudis audaxviator MP104C]
 gi|169637673|gb|ACA59179.1| Ribonuclease III [Candidatus Desulforudis audaxviator MP104C]
          Length = 235

 Score =  265 bits (678), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 74/220 (33%), Positives = 113/220 (51%), Gaps = 4/220 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNH 62
             +  ++ IG  + +  LL +ALTHSS S+ +      +RLEFLGD +L +++S  L+  
Sbjct: 6   NLAEFQEGIGLFWRDPDLLLEALTHSSFSYEHPGHRHNQRLEFLGDAVLEIVVSEHLYRR 65

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
              A EG+L+    ++V     + VARE++L +++R+             S+ AD +E+L
Sbjct: 66  LPDAPEGDLTKIRAAVVCEPALAHVAREMNLGTYLRMGRGEELSGGRERPSVLADALEAL 125

Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           + ALYLD G+EVA  F  +  +    A  +GK   D KT LQE    +      Y +   
Sbjct: 126 LGALYLDQGLEVARWFALQSLEPIISATLAGKGEADYKTRLQELLQKRSPEPLRYVIIKE 185

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            GPDH+  FT  V   G    +G   +K+ AEQ AA E L
Sbjct: 186 EGPDHNKLFTAGVVYRGKVLGRGTGRTKKEAEQHAAREAL 225


>gi|307252103|ref|ZP_07534002.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306860403|gb|EFM92417.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
          Length = 243

 Score =  265 bits (678), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 79/226 (34%), Positives = 119/226 (52%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ ++   L+K++ Y F N   L +ALTH S      ++ ERLEFLGD IL   I   LF
Sbjct: 18  MNNMQLERLQKKLSYQFTNLDYLLQALTHRSAG---AKNNERLEFLGDSILNFAIGKALF 74

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELS    +LV  +T + +AR+  L  ++++ +   K       SI +D VE
Sbjct: 75  EKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVE 134

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++IAA+YLD G++ A   V  +++     +K G  ++D KT LQE+   +    P Y+V 
Sbjct: 135 AIIAAIYLDAGMDKAIAQVHLWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVL 194

Query: 179 FRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              G  H+  F V  +I        G+  S+R AEQ AA +VL + 
Sbjct: 195 DIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAKL 240


>gi|170744647|ref|YP_001773302.1| ribonuclease III [Methylobacterium sp. 4-46]
 gi|168198921|gb|ACA20868.1| Ribonuclease III [Methylobacterium sp. 4-46]
          Length = 244

 Score =  265 bits (678), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 91/222 (40%), Positives = 132/222 (59%), Gaps = 1/222 (0%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             S LE RIG+AF ++ LL +ALTH S + + +ESY+RLEFLGDR+LGL ++  L     
Sbjct: 15  DLSALEGRIGHAFDDKDLLARALTHVS-AGAGEESYQRLEFLGDRVLGLAVAEGLLRALP 73

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            A EG+LS R + LV  E+C+ VA+  ++   +R+ +           +I ADV E+++ 
Sbjct: 74  GADEGDLSRRLSGLVRRESCAAVAQAWEVGPHLRLGAGEVHGGGRRNPAILADVCEAILG 133

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A++LD G   A   +D+ +       G   RD K+ LQEWA      TP Y V  R+GPD
Sbjct: 134 AIFLDAGYAAAKAVIDRAFAAAEEAEGPRGRDPKSALQEWAQGLGLPTPTYAVVERAGPD 193

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           H P F +   ++G+AP+ G+  SKR AEQ AA  +L+REG+W
Sbjct: 194 HAPIFRIEARVAGVAPSLGVGGSKRLAEQEAARLLLRREGVW 235


>gi|315221419|ref|ZP_07863340.1| ribonuclease III [Streptococcus anginosus F0211]
 gi|315189538|gb|EFU23232.1| ribonuclease III [Streptococcus anginosus F0211]
          Length = 232

 Score =  265 bits (678), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 113/224 (50%), Gaps = 7/224 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +  L ++ G  F +  LLE A TH+S ++ ++       ERLEFLGD +L LLIS  L+ 
Sbjct: 5   HKVLSQQFGIVFQDEKLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLISEYLYK 64

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +    EG+LS   +++V  E+ +  +R+     FI++     K       +I  D+ E+
Sbjct: 65  KYPKKPEGDLSKLRSTIVREESLAGFSRDCQFDQFIKLGRGEEKSGGRNRDTILGDLFEA 124

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179
            + AL LD G+E    F+ +    + ++ G F +  D KT+LQE       V   Y+VT 
Sbjct: 125 FLGALLLDKGVEAVKNFLYQVMIPK-VEVGDFEQVIDYKTKLQELLQVNGDVEIVYQVTS 183

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            SGP H   F V V + G    QG   SK+ AEQ AA    ++E
Sbjct: 184 ESGPAHAKEFAVAVSVDGRTVGQGQGRSKKLAEQEAAKNAFEKE 227


>gi|16800985|ref|NP_471253.1| ribonuclease III [Listeria innocua Clip11262]
 gi|22654065|sp|Q92AK3|RNC_LISIN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|16414420|emb|CAC97149.1| rncS [Listeria innocua Clip11262]
 gi|313618316|gb|EFR90363.1| ribonuclease III [Listeria innocua FSL S4-378]
          Length = 229

 Score =  265 bits (678), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 67/224 (29%), Positives = 112/224 (50%), Gaps = 5/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++  L++ +G+ F N  LL++A THSS  + ++    +  ERLEFLGD +L L +S  LF
Sbjct: 3   QWEELQESVGFDFQNVELLQQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N +    EG ++    ++V   +  + A  +  + ++R+     K       ++ ADV E
Sbjct: 63  NKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTF 179
           S I ALYLD GI+    F+++    +       +  D KT+LQE       V  EY +  
Sbjct: 123 SFIGALYLDNGIDKVVKFLERVIFPKIDAGAYLQTVDYKTQLQEIVQRDRDVLIEYDILG 182

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +GP H+  F   V ++G    +G   +K+ AEQ AA   + + 
Sbjct: 183 ETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226


>gi|307247515|ref|ZP_07529560.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|307249746|ref|ZP_07531725.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|307254355|ref|ZP_07536193.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307258813|ref|ZP_07540545.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
 gi|306856018|gb|EFM88176.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|306858254|gb|EFM90331.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306862654|gb|EFM94610.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306867164|gb|EFM99020.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
          Length = 243

 Score =  265 bits (678), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 79/226 (34%), Positives = 119/226 (52%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ ++   L+K++ Y F N   L +ALTH S      ++ ERLEFLGD IL   I   LF
Sbjct: 18  MNNMQLERLQKKLSYQFTNLDYLLQALTHRSAG---AKNNERLEFLGDSILNFAIGKALF 74

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELS    +LV  +T + +AR+  L  ++++ +   K       SI +D VE
Sbjct: 75  EKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVE 134

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++IAA+YLD G++ A   V  +++     +K G  ++D KT LQE+   +    P Y+V 
Sbjct: 135 AIIAAIYLDAGMDKAIEQVHLWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVL 194

Query: 179 FRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              G  H+  F V  +I        G+  S+R AEQ AA +VL + 
Sbjct: 195 DIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAKL 240


>gi|292490849|ref|YP_003526288.1| ribonuclease III [Nitrosococcus halophilus Nc4]
 gi|291579444|gb|ADE13901.1| ribonuclease III [Nitrosococcus halophilus Nc4]
          Length = 231

 Score =  265 bits (678), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 84/219 (38%), Positives = 120/219 (54%), Gaps = 6/219 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              L  ++GY F   +LL  A+TH S +   +E+ ERLEFLGD IL  LI+  L+  F  
Sbjct: 5   LRRLCGKLGYRFTEPALLRCAITHRSAA---KENNERLEFLGDSILNFLIAEFLYIRFPK 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A+EG+LS    +LV  ET +++AREL++   + +     K      TSI AD  E++I A
Sbjct: 62  AQEGKLSRLRATLVKGETLAELARELEIGDHLILGPGELKSGGYRRTSILADAFEAVIGA 121

Query: 126 LYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YLDGG+E     V   ++ R  AL S    +D KT LQE+  A+    P+Y+V+   G 
Sbjct: 122 VYLDGGLEACRKLVASLYEDRLEALTSEVLLKDPKTRLQEYLQARQLPLPDYRVSAVRGE 181

Query: 184 DHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLK 221
            HD  F V   I+   P+  G   S+R AEQ AA + L+
Sbjct: 182 AHDQVFQVECIINDTFPSVVGTGRSRRKAEQDAATQALE 220


>gi|138894713|ref|YP_001125166.1| ribonuclease III [Geobacillus thermodenitrificans NG80-2]
 gi|196247668|ref|ZP_03146370.1| Ribonuclease III [Geobacillus sp. G11MC16]
 gi|189043318|sp|A4IM67|RNC_GEOTN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|134266226|gb|ABO66421.1| Ribonuclease III [Geobacillus thermodenitrificans NG80-2]
 gi|196212452|gb|EDY07209.1| Ribonuclease III [Geobacillus sp. G11MC16]
          Length = 246

 Score =  265 bits (678), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 70/222 (31%), Positives = 106/222 (47%), Gaps = 5/222 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++  L+K+IG  F N  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF
Sbjct: 17  KFQELQKKIGITFQNEKLLIQAFTHSSYVNEHRRRFHEDNERLEFLGDAVLELTVSQYLF 76

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG+L+    ++V   +  + A  L     + +             ++ ADV E
Sbjct: 77  QKFPHMSEGQLTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFE 136

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + I ALYLD G++V   F+ +    +  +       D K++LQE        T EY +  
Sbjct: 137 AFIGALYLDQGMDVVLRFLGQTMFPKIDEGAFSHVMDFKSQLQELVQRDGSGTLEYAILE 196

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             GP H+  F   V ++G     G+  SK+ AEQ AA   L+
Sbjct: 197 EKGPAHNKEFVARVALNGQELGVGVGRSKKEAEQHAAQMALE 238


>gi|307260992|ref|ZP_07542674.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
 gi|306869294|gb|EFN01089.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
          Length = 243

 Score =  265 bits (678), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 79/226 (34%), Positives = 119/226 (52%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ ++   L+K++ Y F N   L +ALTH S      ++ ERLEFLGD IL   I   LF
Sbjct: 18  MNNMQLERLQKKLSYQFTNLDYLLQALTHRSAG---AKNNERLEFLGDSILNFAIGKALF 74

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELS    +LV  +T + +AR+  L  ++++ +   K       SI +D VE
Sbjct: 75  EKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVE 134

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++IAA+YLD G++ A   V  +++     +K G  ++D KT LQE+   +    P Y+V 
Sbjct: 135 AIIAAIYLDAGMDKAIEQVHLWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVL 194

Query: 179 FRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              G  H+  F V  +I        G+  S+R AEQ AA +VL + 
Sbjct: 195 DIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAKL 240


>gi|296133569|ref|YP_003640816.1| ribonuclease III [Thermincola sp. JR]
 gi|296032147|gb|ADG82915.1| ribonuclease III [Thermincola potens JR]
          Length = 245

 Score =  265 bits (678), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 73/225 (32%), Positives = 110/225 (48%), Gaps = 7/225 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           +   L   +G  + +  LL  ALTHSS +H  +    E  +RLEFLGD +L L+IS  L+
Sbjct: 9   KIDELIGVMGIDWTSPELLVTALTHSSYAHENKREPIEHNQRLEFLGDAVLELVISEYLY 68

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F +  EG L+     +V   + + VAR ++L  +I +     +       SI AD +E
Sbjct: 69  DRFPTYPEGVLTKMRAGIVCESSLASVARAMNLGQYILMGKGEERSGGRNRPSILADAME 128

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           ++  A+YLD G+E    F+     +   + +  G    D KTELQE    K   T  Y +
Sbjct: 129 AIFGAVYLDQGLETTKLFIINTLSEQISKVVAKGGQTGDYKTELQELVQQKADNTLTYAI 188

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
               GPDH+  FT  V   G     G   +K+ AEQ AA + L++
Sbjct: 189 IGEEGPDHNKVFTAGVYCHGKIWGVGKGRTKKEAEQAAAHDALEK 233


>gi|46908036|ref|YP_014425.1| ribonuclease III [Listeria monocytogenes serotype 4b str. F2365]
 gi|47093844|ref|ZP_00231588.1| ribonuclease III [Listeria monocytogenes str. 4b H7858]
 gi|226224408|ref|YP_002758515.1| ribonuclease III [Listeria monocytogenes Clip81459]
 gi|254826153|ref|ZP_05231154.1| ribonuclease III [Listeria monocytogenes FSL J1-194]
 gi|254852713|ref|ZP_05242061.1| ribonuclease III [Listeria monocytogenes FSL R2-503]
 gi|254933277|ref|ZP_05266636.1| ribonuclease III [Listeria monocytogenes HPB2262]
 gi|300763882|ref|ZP_07073879.1| ribonuclease III [Listeria monocytogenes FSL N1-017]
 gi|73917580|sp|Q71YL2|RNC_LISMF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|259491903|sp|C1KWA4|RNC_LISMC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|46881306|gb|AAT04602.1| ribonuclease III [Listeria monocytogenes serotype 4b str. F2365]
 gi|47017785|gb|EAL08574.1| ribonuclease III [Listeria monocytogenes str. 4b H7858]
 gi|225876870|emb|CAS05579.1| Putative ribonuclease III [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
 gi|258606034|gb|EEW18642.1| ribonuclease III [Listeria monocytogenes FSL R2-503]
 gi|293584837|gb|EFF96869.1| ribonuclease III [Listeria monocytogenes HPB2262]
 gi|293595393|gb|EFG03154.1| ribonuclease III [Listeria monocytogenes FSL J1-194]
 gi|300515618|gb|EFK42668.1| ribonuclease III [Listeria monocytogenes FSL N1-017]
 gi|328473534|gb|EGF44371.1| ribonuclease III [Listeria monocytogenes 220]
 gi|332312246|gb|EGJ25341.1| Ribonuclease 3 [Listeria monocytogenes str. Scott A]
          Length = 229

 Score =  265 bits (678), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 67/224 (29%), Positives = 113/224 (50%), Gaps = 5/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++  L++ +G+ F +  LL++A THSS  + ++    +  ERLEFLGD +L L +S  LF
Sbjct: 3   QWEELQESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSNYLF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N +    EG ++    ++V   +  + A  +  + ++R+     K       ++ ADV E
Sbjct: 63  NKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTF 179
           S I ALYLD GI+   TF+++    +       +  D KT+LQE       V  EY +  
Sbjct: 123 SFIGALYLDNGIDKVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIVQRDRDVLIEYDILG 182

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +GP H+  F   V ++G    +G   +K+ AEQ AA   + + 
Sbjct: 183 ETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226


>gi|269123548|ref|YP_003306125.1| ribonuclease III [Streptobacillus moniliformis DSM 12112]
 gi|268314874|gb|ACZ01248.1| ribonuclease III [Streptobacillus moniliformis DSM 12112]
          Length = 233

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 71/230 (30%), Positives = 117/230 (50%), Gaps = 6/230 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  +    L  +I Y F N+ LL +ALTHSS  + +     +  ERLEFLGD ++ L+ +
Sbjct: 1   MKKMDLEKLMSKINYTFKNKKLLLEALTHSSYVNEHNFPNIKDNERLEFLGDSVMDLITT 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             ++ +   + EGELS   + ++S    S ++R+L+L ++I +S+           S+  
Sbjct: 61  EYIYKNNLKSNEGELSKIKSQIISETVFSTISRDLNLGNYIFLSNGENMSGGRERNSVLG 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPE 174
           DV E+++ A+YLD         V K  + +     K     D K+ LQE    K+ VTP 
Sbjct: 121 DVFEAMVGAIYLDSDYATTRDVVLKLLESKINNLDKIEWVSDYKSALQEITQLKYKVTPI 180

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           Y V    GPDHD  F + V +      +G+  SK+ AE++AA + +++  
Sbjct: 181 YTVLSEIGPDHDKTFEIEVRVEERLYGKGVAKSKKMAEKIAAKQAIEKLN 230


>gi|261492470|ref|ZP_05989024.1| ribonuclease III [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261496943|ref|ZP_05993311.1| ribonuclease III [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261307467|gb|EEY08802.1| ribonuclease III [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261311833|gb|EEY12982.1| ribonuclease III [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 224

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 75/220 (34%), Positives = 117/220 (53%), Gaps = 6/220 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++   L+K++GY F N   L +ALTH S +    ++ ERLEFLGD IL   I  +L++ F
Sbjct: 1   MQLERLQKKLGYQFHNLDYLIQALTHRSAA---TKNNERLEFLGDSILNFTIGKVLYDKF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             + EGELS    +LV  +T + +AR+ DL  ++++     K       SI +D VE++I
Sbjct: 58  PKSNEGELSRMRATLVREQTLAIIARKFDLGDYLKLGPGELKSGGFRRESILSDCVEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+YLD  +  A   V+ ++    + +  G  ++D KT LQE+   +    PEY V    
Sbjct: 118 AAIYLDQDMAKAMEKVEDWYSDLLKDISPGDSQKDPKTRLQEFLQGRKLPLPEYDVLDIK 177

Query: 182 GPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVL 220
           G  H+  F V  ++        G+  S+R AEQ AA + L
Sbjct: 178 GEAHNQTFRVTCKVINVEEVFIGIGTSRRKAEQNAAEKAL 217


>gi|261419391|ref|YP_003253073.1| ribonuclease III [Geobacillus sp. Y412MC61]
 gi|319766206|ref|YP_004131707.1| ribonuclease III [Geobacillus sp. Y412MC52]
 gi|261375848|gb|ACX78591.1| ribonuclease III [Geobacillus sp. Y412MC61]
 gi|317111072|gb|ADU93564.1| ribonuclease III [Geobacillus sp. Y412MC52]
          Length = 246

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 70/222 (31%), Positives = 106/222 (47%), Gaps = 5/222 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++  L+K+IG  F N  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF
Sbjct: 17  KFQELQKKIGITFRNEKLLIQAFTHSSYVNEHRRRLHEDNERLEFLGDAVLELTVSQYLF 76

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG+L+    ++V   +  + A  L     + +             ++ ADV E
Sbjct: 77  QKFPHMSEGQLTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFE 136

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + I ALYLD G++    F++K    +  +       D K++LQE        T EY +  
Sbjct: 137 AFIGALYLDQGMDAVIRFLEKTMFPKIDEGAFSHVMDFKSQLQELVQRDGSGTLEYAILE 196

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             GP H+  F   V ++G     G+  SK+ AEQ AA   L+
Sbjct: 197 EKGPAHNKEFVARVALNGQELGIGVGRSKKEAEQHAAQMALE 238


>gi|307263177|ref|ZP_07544798.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
 gi|306871539|gb|EFN03262.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
          Length = 243

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 79/226 (34%), Positives = 119/226 (52%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ ++   L+K++ Y F N   L +ALTH S      ++ ERLEFLGD IL   I   LF
Sbjct: 18  MNNMQLERLQKKLSYQFTNLDYLLQALTHRSAG---AKNNERLEFLGDSILNFAIGKALF 74

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELS    +LV  +T + +AR+  L  ++++ +   K       SI +D VE
Sbjct: 75  EKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVE 134

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++IAA+YLD G++ A   V  +++     +K G  ++D KT LQE+   +    P Y+V 
Sbjct: 135 AIIAAIYLDAGMDKAIEQVHLWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVL 194

Query: 179 FRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              G  H+  F V  +I        G+  S+R AEQ AA +VL + 
Sbjct: 195 DIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLVKL 240


>gi|299821773|ref|ZP_07053661.1| ribonuclease III [Listeria grayi DSM 20601]
 gi|299817438|gb|EFI84674.1| ribonuclease III [Listeria grayi DSM 20601]
          Length = 230

 Score =  265 bits (677), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 113/224 (50%), Gaps = 5/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60
           ++  L++ +G+ F N  LL++A THSS  + +++      ERLEFLGD +L L +S  LF
Sbjct: 3   KWEELQESVGFTFENVGLLQEAFTHSSYVNEHRKEKLNDNERLEFLGDAVLELTVSDYLF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             + +  EG+L+    ++V   +  + A  +  + +IR+ +   K       ++ ADV E
Sbjct: 63  QKYPNLAEGQLTKMRAAIVCEPSLVEFAENIHFSKYIRLGNGEEKAGGRTRPALLADVFE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTF 179
           S I ALYLD G++    F+++    +          D KT+LQE       V  +Y +  
Sbjct: 123 SFIGALYLDNGLKNVIRFLERVIFPKIDTGAFLETVDHKTQLQEIVQRDRDVLIQYDILE 182

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            SGP H   F   V ++G    +G   +K+ AEQ AA E + + 
Sbjct: 183 ESGPAHSKAFEAQVVVNGQMLGRGEGRTKKQAEQNAAKEAINKL 226


>gi|212639596|ref|YP_002316116.1| ribonuclease III [Anoxybacillus flavithermus WK1]
 gi|226735364|sp|B7GGE9|RNC_ANOFW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|212561076|gb|ACJ34131.1| DsRNA-specific ribonuclease [Anoxybacillus flavithermus WK1]
          Length = 238

 Score =  265 bits (677), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 104/225 (46%), Gaps = 5/225 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59
           +++   +++ G  F N  LL +A THSS  + ++    E  ERLEFLGD +L L +S  L
Sbjct: 8   VKFKQFQEQTGIFFRNEKLLIQAFTHSSYVNEHRKRLHEDNERLEFLGDAVLELTVSQYL 67

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F  F    EGEL+    ++V   +    A  L     + +             S+ ADV 
Sbjct: 68  FEQFPQMSEGELTKMRAAIVCEPSLVTFAHALSFGDLVLLGKGEELTGGRMRPSLLADVF 127

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVT 178
           E+ I ALYLD GIE    F+ K    +  +       D K++LQE+         EYK+ 
Sbjct: 128 EAFIGALYLDQGIEAVVQFLGKTIFPKIREGAFSHVMDYKSQLQEFVQRDGSGVLEYKIL 187

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              GP H+  F   V ++G     G+  SK+ AEQ AA   L + 
Sbjct: 188 QERGPAHNKEFVSRVSLNGEELGVGVGRSKKEAEQRAAQMALAKL 232


>gi|161761284|ref|YP_032108.2| ribonuclease III [Bartonella quintana str. Toulouse]
          Length = 246

 Score =  265 bits (677), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 117/226 (51%), Positives = 153/226 (67%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+      LE+   + F +   L+KALTHSS+  S Q +YERLEFLGDR+LGLLI+ +L+
Sbjct: 12  MNCPIIDQLERLTEHHFKDEERLKKALTHSSVQDSEQGNYERLEFLGDRVLGLLIAEMLY 71

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELSVR N LV+A+TC+ +A E+ L   I V  ++R      +T++ ADV+E
Sbjct: 72  KLFPQASEGELSVRLNGLVNAQTCADIALEMGLPDMIHVGFEMRNLKGRRLTNMHADVIE 131

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +LIA +YLDGG++    F+ +YW+ RA +    RRDAKTELQEWAH + GV P Y+V  R
Sbjct: 132 ALIAVMYLDGGLKSVRPFIRRYWQSRAKQMDAGRRDAKTELQEWAHVQGGVQPHYRVVKR 191

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           SGPDHDP F V V I G AP  G   SKR AE++AA +VL+REGIW
Sbjct: 192 SGPDHDPVFMVEVSILGFAPEIGQGNSKRCAERMAAEKVLRREGIW 237


>gi|302386299|ref|YP_003822121.1| ribonuclease III [Clostridium saccharolyticum WM1]
 gi|302196927|gb|ADL04498.1| ribonuclease III [Clostridium saccharolyticum WM1]
          Length = 233

 Score =  265 bits (677), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 74/216 (34%), Positives = 113/216 (52%), Gaps = 5/216 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
               LE+RIGY F++R L+ +A+THSS ++ ++    E  ERLEFLGD +L ++ S  L+
Sbjct: 4   NLKELEERIGYRFSDRHLMTQAMTHSSYANEHRLNKLECNERLEFLGDSVLEVVSSDCLY 63

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + +    EG+L+    S+V   T +  A  + L  ++ +             SI +D +E
Sbjct: 64  HKYPEKPEGDLTKIRASIVCEPTLAYCAESIRLGEYLLLGKGEEATGGRGRASIVSDAME 123

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +LI A+YLDGG   A  F+ ++     L+  +   D+KT LQE    K      Y++   
Sbjct: 124 ALIGAIYLDGGFANAKEFILRFI-MNDLEHKQLFYDSKTILQEIVQRKTDEPLSYELLRE 182

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            GPDH+  F   V I      QG   +K+AAEQVAA
Sbjct: 183 EGPDHNKVFEAQVLIGQEVIGQGTGRTKKAAEQVAA 218


>gi|152999778|ref|YP_001365459.1| ribonuclease III [Shewanella baltica OS185]
 gi|189043347|sp|A6WKQ7|RNC_SHEB8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|151364396|gb|ABS07396.1| Ribonuclease III [Shewanella baltica OS185]
          Length = 226

 Score =  265 bits (677), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 84/225 (37%), Positives = 126/225 (56%), Gaps = 7/225 (3%)

Query: 1   MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  ++    L + +GY F N  LL +ALTH S ++ +    ERLEFLGD IL ++IS  L
Sbjct: 1   MEPIKNLPRLCRTLGYEFKNIELLTQALTHRSAANKH---NERLEFLGDSILSIVISDAL 57

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           ++ F  A EG+LS    +LV  +T + +A+E  L  ++ +     K       SI AD V
Sbjct: 58  YHQFPKATEGDLSRMRATLVRGDTLTIIAQEFKLGDYLYLGPGELKSGGFRRESILADAV 117

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD  +EV    + K++ +R   ++ G  ++DAKT LQE         P+Y+V
Sbjct: 118 EAIIGAVYLDSDLEVCRALLLKWYAERLAEIQPGISQKDAKTLLQEHLQGFKKPLPDYQV 177

Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLK 221
               G  HD  FTV   I  L+ +  G+  S+R AEQ+AAA+VL+
Sbjct: 178 INIEGDAHDQTFTVECRIEDLSQSVIGVASSRRKAEQIAAAQVLE 222


>gi|1389549|dbj|BAA10976.1| ORF3 [Bacillus subtilis]
          Length = 266

 Score =  265 bits (677), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 108/225 (48%), Gaps = 5/225 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59
            ++   ++RI   F N  LL +A THSS  + ++    E  ERLEFLGD +L L IS  L
Sbjct: 18  EQFKEFQERISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISRFL 77

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F  + +  EG+L+    ++V   +   +A EL     + +             ++ ADV 
Sbjct: 78  FPKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVF 137

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVT 178
           E+ I ALYLD G+E   +F+  Y   +          D K++LQE+       + EYK++
Sbjct: 138 EAFIGALYLDQGLEPVESFLKVYVFPKINDGAFPHVMDFKSQLQEYVQRDGKGSLEYKIS 197

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              GP H+  F  +V + G     G   SK+ AEQ AA E L + 
Sbjct: 198 NEKGPAHNREFEAIVSLKGEPLGVGNGRSKKEAEQHAAQEALAKL 242


>gi|332532635|ref|ZP_08408511.1| ribonuclease III [Pseudoalteromonas haloplanktis ANT/505]
 gi|332037851|gb|EGI74300.1| ribonuclease III [Pseudoalteromonas haloplanktis ANT/505]
          Length = 225

 Score =  265 bits (677), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 79/219 (36%), Positives = 118/219 (53%), Gaps = 5/219 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             + L K+IGY FA++ LLE+A+TH S      +  ERLEFLGD IL  +I+  L+  F 
Sbjct: 4   NVTELYKKIGYEFADQGLLEQAMTHRS---HKGQHNERLEFLGDSILSFVIANALYAKFP 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            A+EG+LS   ++LV  +T ++   E  L  ++R+     K       S  AD VE++I 
Sbjct: 61  KAREGDLSRMRSTLVRGQTLAEFGLEFGLGDYLRLGPGELKSGGFRRESTLADAVEAIIG 120

Query: 125 ALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A +LD GI+  G  +  +++ R  A+  G  ++D KT LQE+  A+    P Y V    G
Sbjct: 121 AAFLDSGIDSCGDLILSWYESRLDAISPGLNQKDPKTLLQEYLQARKLSLPGYTVVDTKG 180

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             H+  FTV   + G+     +  S+R AEQ AA + LK
Sbjct: 181 QAHNQTFTVECIVDGMDSIISVGSSRRKAEQKAAEKALK 219


>gi|1228146|gb|AAA92440.1| RNase III [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 224

 Score =  265 bits (677), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 79/219 (36%), Positives = 117/219 (53%), Gaps = 7/219 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S  +    ERLEFLGD IL  +I+  L 
Sbjct: 1   MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKH---NERLEFLGDSILSFVIANALS 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG++S   + LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  -RFPRVDEGDMSRMRDPLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  ++K R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 117 ALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 176

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAA 216
              G  HD  FT+  ++SGL  P  G   S+R AEQ AA
Sbjct: 177 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAA 215


>gi|120599802|ref|YP_964376.1| ribonuclease III [Shewanella sp. W3-18-1]
 gi|146292262|ref|YP_001182686.1| ribonuclease III [Shewanella putrefaciens CN-32]
 gi|189043352|sp|A4Y4K4|RNC_SHEPC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043355|sp|A1RMC7|RNC_SHESW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|120559895|gb|ABM25822.1| RNAse III [Shewanella sp. W3-18-1]
 gi|145563952|gb|ABP74887.1| RNAse III [Shewanella putrefaciens CN-32]
 gi|319425561|gb|ADV53635.1| ribonuclease III [Shewanella putrefaciens 200]
          Length = 226

 Score =  265 bits (677), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 82/225 (36%), Positives = 125/225 (55%), Gaps = 7/225 (3%)

Query: 1   MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  ++    L + +GY F    LL +ALTH S ++ +    ERLEFLGD IL ++IS  L
Sbjct: 1   MEPIKNLPRLCRTLGYEFTQIELLTQALTHRSAANKH---NERLEFLGDSILSIVISDAL 57

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           ++ F  A EG+LS    +LV  +T + +A+E  L  ++ +     K       SI AD V
Sbjct: 58  YHQFPKATEGDLSRMRATLVRGDTLTIIAQEFKLGDYLYLGPGELKSGGFRRESILADAV 117

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD  +EV    +  ++ +R   ++ G  ++DAKT LQE+        P+Y+V
Sbjct: 118 EAIIGAIYLDSDLEVCRKLLLTWYAERLAEIQPGVSQKDAKTLLQEYLQGLKKPLPDYQV 177

Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLK 221
               G  HD  FTV   I  L+ +  G+  S+R AEQ+AAA+VL+
Sbjct: 178 INIEGDAHDQTFTVECRIEDLSQSVIGVASSRRKAEQIAAAQVLE 222


>gi|206603814|gb|EDZ40294.1| Ribonuclease III [Leptospirillum sp. Group II '5-way CG']
          Length = 247

 Score =  265 bits (677), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 81/231 (35%), Positives = 119/231 (51%), Gaps = 8/231 (3%)

Query: 1   MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-----SYERLEFLGDRILGLL 54
           M   R  S LE  +GY F    LLE+A TH S  +  +      + ERLEFLGD +LGL+
Sbjct: 1   MKPHRELSELEDLLGYRFRKIDLLEEATTHKSFMNEGRRLGVTRNNERLEFLGDTVLGLV 60

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
           I+  L   +    EG LS     +VS  T + V+R L +  F+ +            +S+
Sbjct: 61  IAEYLMVTYPKYPEGVLSKFKGRIVSEPTLASVSRVLGIGGFLLIGKGEELTQGREKSSL 120

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVT 172
            AD +E++IAA+YLD G++ A TF+  +++    ++      +D KT+LQE+   +    
Sbjct: 121 LADAMEAVIAAIYLDSGLDAARTFIIGHFRSVIEQTVQEDSIQDYKTDLQEYCQRELETL 180

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           P Y+V  + GPDH   F V V I G    +G   SK+ AEQ AA + L R 
Sbjct: 181 PVYQVMDQRGPDHQKEFDVAVLIRGKIYGEGSGRSKKEAEQKAAKDALSRL 231


>gi|315282805|ref|ZP_07871128.1| ribonuclease III [Listeria marthii FSL S4-120]
 gi|313613534|gb|EFR87355.1| ribonuclease III [Listeria marthii FSL S4-120]
          Length = 229

 Score =  265 bits (677), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 67/224 (29%), Positives = 113/224 (50%), Gaps = 5/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++  L++ +G+ F +  LL++A THSS  + ++    +  ERLEFLGD +L L +S  LF
Sbjct: 3   QWEELQESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N +    EG ++    ++V   +  + A  +  + ++R+     K       ++ ADV E
Sbjct: 63  NKYPEMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTF 179
           S I ALYLD GI+   TF+++    +       +  D KT+LQE       V  EY +  
Sbjct: 123 SFIGALYLDNGIDKVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIVQRDRDVLIEYDILG 182

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +GP H+  F   V ++G    +G   +K+ AEQ AA   + + 
Sbjct: 183 ETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226


>gi|262282633|ref|ZP_06060401.1| ribonuclease III [Streptococcus sp. 2_1_36FAA]
 gi|262261924|gb|EEY80622.1| ribonuclease III [Streptococcus sp. 2_1_36FAA]
          Length = 232

 Score =  265 bits (677), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 75/230 (32%), Positives = 117/230 (50%), Gaps = 8/230 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L  + L  R G  F + SLLE A TH+S ++ ++       ERLEFLGD +L L+IS
Sbjct: 1   MKKLE-NLLFDRFGLVFKDVSLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  +    EG+L+   +++V  E+ +  +R+     FI++     K       +I  
Sbjct: 60  EYLFEKYPKRPEGDLTKLRSTIVREESLAGFSRDCQFDLFIKLGKGEEKSGGRERETILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D+ E+ + AL LD G+E+   F+ +    + +++G F +  D KT+LQE   +   V   
Sbjct: 120 DLFEAFLGALLLDKGLEIVKDFIYQVMIPK-VEAGDFEQVTDYKTKLQELLQSNGDVEIL 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           Y+V   SGP H   F V V + G    +G   SK+ AEQ AA    ++E 
Sbjct: 179 YQVVSESGPAHAKNFEVSVSVDGRLVGKGQGRSKKLAEQEAAKNAFEKEN 228


>gi|326794405|ref|YP_004312225.1| ribonuclease 3 [Marinomonas mediterranea MMB-1]
 gi|326545169|gb|ADZ90389.1| Ribonuclease 3 [Marinomonas mediterranea MMB-1]
          Length = 227

 Score =  264 bits (676), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 93/226 (41%), Positives = 126/226 (55%), Gaps = 7/226 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           MS+L Y  L +RIGY FA+  LLE ALTH S      ++ ERLEFLGD IL  +I+  LF
Sbjct: 1   MSSL-YQKLCRRIGYFFADLGLLELALTHRSYG---GKNNERLEFLGDSILNYVIAEDLF 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F  AKEGELS    SLV  +T +++ARE  L  F+++ +   K       SI AD VE
Sbjct: 57  HRFPKAKEGELSRLRASLVKGDTLAELAREFQLGDFLKLGAGELKSGGFRRDSILADTVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVT 178
            +I A+YLD G++     + +++K R   +      +DAKT LQE+  A+    P+Y+V 
Sbjct: 117 GIIGAMYLDAGMDTCKNQILEWYKTRLDATSLNVVTKDAKTRLQEYLQARKHGLPQYEVV 176

Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKRE 223
              G  HD  F V   I     A +G   S+R AEQ AAAE L + 
Sbjct: 177 NIDGEPHDQTFFVHCHIEIFDQAVEGKGNSRRIAEQNAAAEALSQL 222


>gi|188589361|ref|YP_001920585.1| ribonuclease III [Clostridium botulinum E3 str. Alaska E43]
 gi|251778911|ref|ZP_04821831.1| ribonuclease III [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|238689672|sp|B2V4D6|RNC_CLOBA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|188499642|gb|ACD52778.1| ribonuclease III [Clostridium botulinum E3 str. Alaska E43]
 gi|243083226|gb|EES49116.1| ribonuclease III [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 232

 Score =  264 bits (676), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 82/227 (36%), Positives = 125/227 (55%), Gaps = 4/227 (1%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTL 58
           M+  +++ +E R+G  F N SL++ ALTHSS  + ++++   ERLEFLGD +L L I+  
Sbjct: 1   MNRYKFNDIENRLGVYFNNPSLIKTALTHSSFGNQFKDAKYNERLEFLGDSVLQLCITEY 60

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LFN F    EGEL+   + +V   +  ++A++L L  +IR+S            SIQAD 
Sbjct: 61  LFNKFKDKSEGELTKIRSLIVCENSLYEIAKKLSLGEYIRMSKGEELTGGRERMSIQADA 120

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYK 176
           VE++IAA+YLD GI     F+  ++++   K+   +   D KT+LQE       +  +Y+
Sbjct: 121 VEAVIAAVYLDKGIGFVNDFILLHFEEMINKAINNEIVLDFKTKLQELLQKDGEILIQYE 180

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +    GP H  +F   V I+      G   SK+ AEQ AA E LKR 
Sbjct: 181 LLKYEGPPHRRKFFTNVIINEKVMGIGEGYSKKEAEQNAAKEALKRL 227


>gi|222148081|ref|YP_002549038.1| ribonuclease III [Agrobacterium vitis S4]
 gi|259491897|sp|B9JUN7|RNC_AGRVS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|221735069|gb|ACM36032.1| ribonuclease III [Agrobacterium vitis S4]
          Length = 239

 Score =  264 bits (676), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 131/227 (57%), Positives = 160/227 (70%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           ++A     +E  IGY F  +  L+KALTHSS   +    YERLEFLGDR+LGL ++  LF
Sbjct: 7   LTAEEREKVEAVIGYHFIGKERLDKALTHSSARPAKGSDYERLEFLGDRVLGLCVAEHLF 66

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F +A EGELSVR N LVSAETC+ VA E+ L  +IR  +D++K     M +++ADVVE
Sbjct: 67  KVFRAATEGELSVRLNQLVSAETCAAVADEIQLHRYIRTGADVKKLTDKNMLNVRADVVE 126

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           SLIAA+YLD G+E A  FV K+W +RA +    RRDAKTELQEWAHAKF VTP Y+V  R
Sbjct: 127 SLIAAIYLDAGLEAARAFVLKFWAERASRQDAGRRDAKTELQEWAHAKFAVTPVYRVADR 186

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           SGPDHDP FTV VEI  L P  G+D SKRAAEQ AA  +L+REG+WT
Sbjct: 187 SGPDHDPSFTVTVEIGKLEPETGIDRSKRAAEQAAATRLLEREGVWT 233


>gi|295399780|ref|ZP_06809761.1| ribonuclease III [Geobacillus thermoglucosidasius C56-YS93]
 gi|312111708|ref|YP_003990024.1| ribonuclease III [Geobacillus sp. Y4.1MC1]
 gi|294978183|gb|EFG53780.1| ribonuclease III [Geobacillus thermoglucosidasius C56-YS93]
 gi|311216809|gb|ADP75413.1| ribonuclease III [Geobacillus sp. Y4.1MC1]
          Length = 246

 Score =  264 bits (676), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 69/224 (30%), Positives = 105/224 (46%), Gaps = 5/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++  L+K+IG  F N  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF
Sbjct: 17  KFKELQKKIGIFFTNEKLLIQAFTHSSYVNEHRKRPHEDNERLEFLGDAVLELTVSQYLF 76

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EGEL+    ++V   +  + A  L     + +             ++ ADV E
Sbjct: 77  KKFPHMSEGELTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFE 136

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + I ALYLD G++    F+ +    +  +       D K++LQE          EY +  
Sbjct: 137 AFIGALYLDKGMDAVMQFLGQTIFPKIDEGAFSHVMDFKSQLQELVQRDGIGVLEYSILE 196

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             GP H+  F   V ++G     G+  SK+ AEQ AA   L++ 
Sbjct: 197 EKGPAHNKEFVSRVSLNGQELGIGVGKSKKEAEQHAAQMALQKL 240


>gi|324993856|gb|EGC25775.1| ribonuclease III [Streptococcus sanguinis SK405]
 gi|325690806|gb|EGD32807.1| ribonuclease III [Streptococcus sanguinis SK115]
 gi|332367146|gb|EGJ44882.1| ribonuclease III [Streptococcus sanguinis SK1059]
          Length = 232

 Score =  264 bits (675), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 76/229 (33%), Positives = 118/229 (51%), Gaps = 8/229 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + LE+     F++ +LLE A TH+S ++ ++       ERLEFLGD +L L+IS
Sbjct: 1   MENLKKALLEQ-FDLVFSDETLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS   + +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYTKYPKRPEGDLSKLRSMIVREESLAGFARDCQFDQFIKLGRGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D+ E+ + AL LD G+E   +F+ +    + +++G F R  D KT+LQE       V   
Sbjct: 120 DLFEAFLGALLLDKGVEAVKSFLYQVMIPK-VEAGDFERVTDYKTKLQELLQINGDVEIT 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           Y+V   +GP H   F V V I+G    QG   SK+ AEQ AA    ++E
Sbjct: 179 YQVVSETGPAHAKNFEVAVLINGRKSGQGQGRSKKLAEQEAAKNAFEKE 227


>gi|56419727|ref|YP_147045.1| ribonuclease III [Geobacillus kaustophilus HTA426]
 gi|81347639|sp|Q5L0Q3|RNC_GEOKA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|56379569|dbj|BAD75477.1| dsRNA-specific ribonuclease [Geobacillus kaustophilus HTA426]
          Length = 246

 Score =  264 bits (675), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 69/222 (31%), Positives = 105/222 (47%), Gaps = 5/222 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++  L+ +IG  F N  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF
Sbjct: 17  KFQELQNKIGITFRNEKLLIQAFTHSSYVNEHRRRLHEDNERLEFLGDAVLELTVSQYLF 76

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG+L+    ++V   +  + A  L     + +             ++ ADV E
Sbjct: 77  QKFPHMSEGQLTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFE 136

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + I ALYLD G++    F++K    +  +       D K++LQE        T EY +  
Sbjct: 137 AFIGALYLDQGMDAVIRFLEKTMFPKIDEGAFSHVMDFKSQLQELVQRDGSGTLEYAILE 196

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             GP H+  F   V ++G     G+  SK+ AEQ AA   L+
Sbjct: 197 EKGPAHNKEFVARVALNGQELGIGVGRSKKEAEQHAAQMALE 238


>gi|15601926|ref|NP_244998.1| ribonuclease III [Pasteurella multocida subsp. multocida str. Pm70]
 gi|13431826|sp|P57805|RNC_PASMU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|12720269|gb|AAK02145.1| Rnc [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 225

 Score =  264 bits (675), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 73/220 (33%), Positives = 112/220 (50%), Gaps = 6/220 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               L+++IGY F   +LL++ALTH S +    +  ERLEFLGD IL  +I+  L++ F 
Sbjct: 4   NLERLQRQIGYQFNQPALLKQALTHRSAA---VKHNERLEFLGDAILNFIIAEALYHQFP 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGELS    +LV   T + +AR+ +L  ++ +     K       SI AD VE++I 
Sbjct: 61  KCNEGELSRMRATLVREPTLASLARQFELGDYLSLGPGELKSGGFRRESILADCVEAIIG 120

Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+ LD  +      V  +++ +   ++ G  ++D KT LQE+   K    P Y V    G
Sbjct: 121 AISLDSDLATTTKIVQHWYQAQLKQIQPGDNQKDPKTRLQEYLQGKRLPLPTYNVVEIKG 180

Query: 183 PDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLK 221
             H   FTV   +  +     G   S+R AEQ AA ++L+
Sbjct: 181 EAHCQTFTVECYVKNIDRTFMGSGASRRKAEQAAAEKILQ 220


>gi|81647146|sp|Q6G082|RNC_BARQU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|49239570|emb|CAF25927.1| Ribonuclease III [Bartonella quintana str. Toulouse]
          Length = 235

 Score =  264 bits (675), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 117/226 (51%), Positives = 153/226 (67%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+      LE+   + F +   L+KALTHSS+  S Q +YERLEFLGDR+LGLLI+ +L+
Sbjct: 1   MNCPIIDQLERLTEHHFKDEERLKKALTHSSVQDSEQGNYERLEFLGDRVLGLLIAEMLY 60

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELSVR N LV+A+TC+ +A E+ L   I V  ++R      +T++ ADV+E
Sbjct: 61  KLFPQASEGELSVRLNGLVNAQTCADIALEMGLPDMIHVGFEMRNLKGRRLTNMHADVIE 120

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +LIA +YLDGG++    F+ +YW+ RA +    RRDAKTELQEWAH + GV P Y+V  R
Sbjct: 121 ALIAVMYLDGGLKSVRPFIRRYWQSRAKQMDAGRRDAKTELQEWAHVQGGVQPHYRVVKR 180

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           SGPDHDP F V V I G AP  G   SKR AE++AA +VL+REGIW
Sbjct: 181 SGPDHDPVFMVEVSILGFAPEIGQGNSKRCAERMAAEKVLRREGIW 226


>gi|289435148|ref|YP_003465020.1| ribonuclease III [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289171392|emb|CBH27936.1| ribonuclease III [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|313632767|gb|EFR99733.1| ribonuclease III [Listeria seeligeri FSL N1-067]
 gi|313637349|gb|EFS02832.1| ribonuclease III [Listeria seeligeri FSL S4-171]
          Length = 230

 Score =  264 bits (675), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 111/224 (49%), Gaps = 5/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++  L++ +G+ F +  LL++A THSS  + ++    +  ERLEFLGD +L L +S  LF
Sbjct: 3   KWEELQESVGFDFQDIELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSNYLF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N +    EG ++    ++V   +  + A  +  + ++R+     K       ++ ADV E
Sbjct: 63  NKYPDMAEGHMTKMRAAIVCEPSLVEFAEVVHFSKYVRLGKGEEKAGGRTRPALLADVFE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTF 179
           S I ALYLD G+E    F+++    +          D KT+LQE       V  EY +  
Sbjct: 123 SFIGALYLDNGLEKVVKFLERVIFPKIDAGAYLETVDYKTQLQEIVQRDRDVLIEYDILG 182

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +GP H+  F   V ++G    +G   +K+ AEQ AA   + + 
Sbjct: 183 ETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226


>gi|46143661|ref|ZP_00134800.2| COG0571: dsRNA-specific ribonuclease [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 226

 Score =  263 bits (674), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 79/226 (34%), Positives = 119/226 (52%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ ++   L+K++ Y F N   L +ALTH S      ++ ERLEFLGD IL   I   LF
Sbjct: 1   MNNMQLERLQKKLSYQFTNLDYLLQALTHRSAG---AKNNERLEFLGDSILNFAIGKALF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELS    +LV  +T + +AR+  L  ++++ +   K       SI +D VE
Sbjct: 58  EKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++IAA+YLD G++ A   V  +++     +K G  ++D KT LQE+   +    P Y+V 
Sbjct: 118 AIIAAIYLDAGMDKAIEQVHLWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVL 177

Query: 179 FRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              G  H+  F V  +I        G+  S+R AEQ AA +VL + 
Sbjct: 178 DIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAKL 223


>gi|126667175|ref|ZP_01738149.1| ribonuclease III [Marinobacter sp. ELB17]
 gi|126628331|gb|EAZ98954.1| ribonuclease III [Marinobacter sp. ELB17]
          Length = 229

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 79/226 (34%), Positives = 115/226 (50%), Gaps = 6/226 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               L++RIGY F ++  L  ALTH S  +   ++ ERLEFLGD I+ ++I+  LF  F 
Sbjct: 6   DLEPLQRRIGYQFKSQERLLLALTHRSFGN---QNNERLEFLGDSIVNMVIAEHLFRRFP 62

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            A+EG+LS     +V   T +++ RE DL S++R+ S   K       SI AD VES+I 
Sbjct: 63  KAREGQLSRLRARMVKGVTLAEIGREFDLGSYLRLGSGELKSGGFRRESILADAVESVIG 122

Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YLD         + +++  R   L     ++D KT LQE+  ++    P Y V    G
Sbjct: 123 AIYLDSDFVTCQAQILRWFDLRLQNLDLQDTQKDPKTRLQEYLQSRQFPLPIYDVLSVDG 182

Query: 183 PDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKREGIWT 227
             H+  F +   +S L     G   S+R AEQ AA   LK  G+  
Sbjct: 183 EAHNQTFHISCALSSLGRKTTGSGNSRRIAEQQAARNALKELGVEN 228


>gi|325677853|ref|ZP_08157495.1| ribonuclease III [Ruminococcus albus 8]
 gi|324110407|gb|EGC04581.1| ribonuclease III [Ruminococcus albus 8]
          Length = 232

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 81/225 (36%), Positives = 122/225 (54%), Gaps = 4/225 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFN 61
             +  +KRIGY+F N  LL +AL+HSS ++  ++   S ERLEFLGD +L +++S  +F 
Sbjct: 6   NLAEFQKRIGYSFKNDRLLYEALSHSSFANENKKQRHSNERLEFLGDSVLSIVVSDYIFE 65

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF    EGEL+    SLV  +   + + + +L  +I +             SI +D +E+
Sbjct: 66  HFKHLPEGELTKLRASLVCEKALFEFSHKFELGKYIFLGKGEELTGGRERASIVSDAMEA 125

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +IAA+YLDGG+E A   +  +  +    +  +   D KT LQE          EY +   
Sbjct: 126 VIAAIYLDGGLEAARKHIMGFLPKDINPAHTETFHDYKTVLQEVIQRNPEEKIEYFLKGE 185

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            GPDHD RFTV V+++     +G+  SK++AEQ AA E L   GI
Sbjct: 186 EGPDHDKRFTVQVKLNSNVIGEGVGRSKKSAEQNAAKEALDLMGI 230


>gi|315127397|ref|YP_004069400.1| RNase III, ds RNA [Pseudoalteromonas sp. SM9913]
 gi|315015911|gb|ADT69249.1| RNase III, ds RNA [Pseudoalteromonas sp. SM9913]
          Length = 225

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 79/219 (36%), Positives = 119/219 (54%), Gaps = 5/219 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             + L KRIGY FA++ LLE+A+TH S      +  ERLEFLGD IL  +I+  L+  F 
Sbjct: 4   NVTELYKRIGYTFADQGLLEQAMTHRS---HKGQHNERLEFLGDSILSFVIANALYAKFP 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            A+EG+LS   ++LV  +T ++   E +L  ++R+     K       S  AD VE++I 
Sbjct: 61  KAREGDLSRMRSTLVRGQTLAEFGLEFELGDYLRLGPGELKSGGFRRESTLADAVEAIIG 120

Query: 125 ALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A++LD  I+  G  +  +++ R  A+  G  ++D KT LQE+  A+    P Y V    G
Sbjct: 121 AVFLDSDIDRCGELILAWYESRLDAISPGLNQKDPKTLLQEYLQARKLSLPGYTVVDTKG 180

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             H+  FTV   + G+     +  S+R AEQ AA + LK
Sbjct: 181 QAHNQTFTVECIVDGMDSIISVGSSRRKAEQKAAEKALK 219


>gi|221135073|ref|ZP_03561376.1| ribonuclease III [Glaciecola sp. HTCC2999]
          Length = 241

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 124/221 (56%), Gaps = 6/221 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           +  L++ I Y F + SLL++ALTH S    +++  ERLEFLGD +LG+++   LF  F +
Sbjct: 21  FVKLQRLIDYQFNDVSLLKQALTHKSA---HRQHNERLEFLGDAVLGMIVGEHLFKAFPN 77

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           + EG+L+   +++V  +T +++A E  L  FI++ +   K       SI ADVVES+I A
Sbjct: 78  SPEGKLTRMRSAIVKGDTLAEIALEKGLGEFIQLGAGELKSGGKQRYSILADVVESIIGA 137

Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YLD G+     F+  ++  R   L      +DAKT LQE+  ++    P Y+V    G 
Sbjct: 138 IYLDAGMNQCYDFIHAWFGARIAKLDPDVHPKDAKTRLQEYLQSRGIELPVYEVVDIKGK 197

Query: 184 DHDPRFTVVV-EISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           DH+  FTV    ++   P Q    S++ AEQ+AA   L++ 
Sbjct: 198 DHNQTFTVSCNTVTLSDPIQAQGASRKRAEQIAAQLTLEKL 238


>gi|23098981|ref|NP_692447.1| ribonuclease III [Oceanobacillus iheyensis HTE831]
 gi|38372423|sp|Q8ER05|RNC_OCEIH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|22777209|dbj|BAC13482.1| ribonuclease III [Oceanobacillus iheyensis HTE831]
          Length = 228

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 65/222 (29%), Positives = 107/222 (48%), Gaps = 5/222 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59
           +    LE+ +G +F  ++LL++A THSS  + +++      ERLEFLGD +L L +S  L
Sbjct: 1   MDIRPLEEHLGISFQQKALLKEAFTHSSYVNEHRKQRLSDNERLEFLGDAVLELAVSQYL 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           + +     EGE++    ++V   +    A EL+   F+R+    ++       +I AD  
Sbjct: 61  YRNNKDMPEGEMTKLRAAIVCEPSLKNFAEELEFGKFLRLGKGEQQTGGRERPAILADAF 120

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVT 178
           E+ + ALYLD G +    F++ +   +          D K++LQE+         EY++ 
Sbjct: 121 EAFLGALYLDQGFDNVLDFLNIHVFPKLTTGAFSHAMDYKSQLQEFVQQHKDQKIEYRII 180

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
              GP H+  F   V I   A   G   +K+ AEQ AA   L
Sbjct: 181 EEKGPSHNKEFVAEVVIQEKAAGIGTGRTKKEAEQRAAKNAL 222


>gi|322387562|ref|ZP_08061171.1| ribonuclease III [Streptococcus infantis ATCC 700779]
 gi|321141429|gb|EFX36925.1| ribonuclease III [Streptococcus infantis ATCC 700779]
          Length = 232

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 109/224 (48%), Gaps = 6/224 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62
           + LE+R G  F+++ LLE A TH+S ++ ++       ERLEFLGD +L LLIS  L+  
Sbjct: 6   TVLEQRFGLVFSDKQLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLYKK 65

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +    EG+LS     +V  E+ +  AR+     FI++     K       +I  D  E+ 
Sbjct: 66  YPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILGDAFEAF 125

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + AL LD  +     F+ +    +      +  +D KT LQE       V   Y+V    
Sbjct: 126 LGALLLDKDLLTVKEFIYQVMIPKVEAGDFEMIKDYKTHLQELLQVNGDVDIRYQVISEI 185

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           GP HD  F V V + G +  +G   SK+ AEQ AA   ++ EG+
Sbjct: 186 GPAHDKMFEVEVLVEGQSLGRGQGRSKKLAEQEAAKNAVE-EGL 228


>gi|227517298|ref|ZP_03947347.1| ribonuclease III [Enterococcus faecalis TX0104]
 gi|227554519|ref|ZP_03984566.1| ribonuclease III [Enterococcus faecalis HH22]
 gi|229547475|ref|ZP_04436200.1| ribonuclease III [Enterococcus faecalis TX1322]
 gi|229548050|ref|ZP_04436775.1| ribonuclease III [Enterococcus faecalis ATCC 29200]
 gi|256854772|ref|ZP_05560136.1| ribonuclease III [Enterococcus faecalis T8]
 gi|293385103|ref|ZP_06630929.1| ribonuclease III [Enterococcus faecalis R712]
 gi|293389076|ref|ZP_06633548.1| ribonuclease III [Enterococcus faecalis S613]
 gi|307270584|ref|ZP_07551882.1| ribonuclease III [Enterococcus faecalis TX4248]
 gi|307273593|ref|ZP_07554821.1| ribonuclease III [Enterococcus faecalis TX0855]
 gi|307284870|ref|ZP_07565026.1| ribonuclease III [Enterococcus faecalis TX0860]
 gi|307288870|ref|ZP_07568843.1| ribonuclease III [Enterococcus faecalis TX0109]
 gi|307292116|ref|ZP_07571982.1| ribonuclease III [Enterococcus faecalis TX0411]
 gi|312902145|ref|ZP_07761405.1| ribonuclease III [Enterococcus faecalis TX0470]
 gi|312905399|ref|ZP_07764513.1| ribonuclease III [Enterococcus faecalis TX0635]
 gi|312906714|ref|ZP_07765714.1| ribonuclease III [Enterococcus faecalis DAPTO 512]
 gi|312910825|ref|ZP_07769661.1| ribonuclease III [Enterococcus faecalis DAPTO 516]
 gi|312953196|ref|ZP_07772042.1| ribonuclease III [Enterococcus faecalis TX0102]
 gi|227075305|gb|EEI13268.1| ribonuclease III [Enterococcus faecalis TX0104]
 gi|227176317|gb|EEI57289.1| ribonuclease III [Enterococcus faecalis HH22]
 gi|229306839|gb|EEN72835.1| ribonuclease III [Enterococcus faecalis ATCC 29200]
 gi|229307399|gb|EEN73386.1| ribonuclease III [Enterococcus faecalis TX1322]
 gi|256710332|gb|EEU25376.1| ribonuclease III [Enterococcus faecalis T8]
 gi|291077580|gb|EFE14944.1| ribonuclease III [Enterococcus faecalis R712]
 gi|291081544|gb|EFE18507.1| ribonuclease III [Enterococcus faecalis S613]
 gi|306496769|gb|EFM66320.1| ribonuclease III [Enterococcus faecalis TX0411]
 gi|306500142|gb|EFM69486.1| ribonuclease III [Enterococcus faecalis TX0109]
 gi|306503129|gb|EFM72386.1| ribonuclease III [Enterococcus faecalis TX0860]
 gi|306509606|gb|EFM78648.1| ribonuclease III [Enterococcus faecalis TX0855]
 gi|306513165|gb|EFM81799.1| ribonuclease III [Enterococcus faecalis TX4248]
 gi|310627362|gb|EFQ10645.1| ribonuclease III [Enterococcus faecalis DAPTO 512]
 gi|310628813|gb|EFQ12096.1| ribonuclease III [Enterococcus faecalis TX0102]
 gi|310631128|gb|EFQ14411.1| ribonuclease III [Enterococcus faecalis TX0635]
 gi|311288848|gb|EFQ67404.1| ribonuclease III [Enterococcus faecalis DAPTO 516]
 gi|311290809|gb|EFQ69365.1| ribonuclease III [Enterococcus faecalis TX0470]
 gi|315026454|gb|EFT38386.1| ribonuclease III [Enterococcus faecalis TX2137]
 gi|315028377|gb|EFT40309.1| ribonuclease III [Enterococcus faecalis TX4000]
 gi|315031785|gb|EFT43717.1| ribonuclease III [Enterococcus faecalis TX0017]
 gi|315034802|gb|EFT46734.1| ribonuclease III [Enterococcus faecalis TX0027]
 gi|315145468|gb|EFT89484.1| ribonuclease III [Enterococcus faecalis TX2141]
 gi|315146605|gb|EFT90621.1| ribonuclease III [Enterococcus faecalis TX4244]
 gi|315151034|gb|EFT95050.1| ribonuclease III [Enterococcus faecalis TX0012]
 gi|315152764|gb|EFT96780.1| ribonuclease III [Enterococcus faecalis TX0031]
 gi|315154690|gb|EFT98706.1| ribonuclease III [Enterococcus faecalis TX0043]
 gi|315159400|gb|EFU03417.1| ribonuclease III [Enterococcus faecalis TX0312]
 gi|315161159|gb|EFU05176.1| ribonuclease III [Enterococcus faecalis TX0645]
 gi|315164397|gb|EFU08414.1| ribonuclease III [Enterococcus faecalis TX1302]
 gi|315167205|gb|EFU11222.1| ribonuclease III [Enterococcus faecalis TX1341]
 gi|315171217|gb|EFU15234.1| ribonuclease III [Enterococcus faecalis TX1342]
 gi|315172944|gb|EFU16961.1| ribonuclease III [Enterococcus faecalis TX1346]
 gi|315573246|gb|EFU85437.1| ribonuclease III [Enterococcus faecalis TX0309B]
 gi|315577147|gb|EFU89338.1| ribonuclease III [Enterococcus faecalis TX0630]
 gi|315581180|gb|EFU93371.1| ribonuclease III [Enterococcus faecalis TX0309A]
 gi|323479029|gb|ADX78468.1| ribonuclease III [Enterococcus faecalis 62]
 gi|327536218|gb|AEA95052.1| ribonuclease III [Enterococcus faecalis OG1RF]
 gi|329575676|gb|EGG57203.1| ribonuclease III [Enterococcus faecalis TX1467]
          Length = 243

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 110/226 (48%), Gaps = 5/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M     + L++R G  F + +LLE+A THSS  + ++       ERLEFLGD +L L++S
Sbjct: 14  MDNQLTTELKERYGIVFHDVNLLEQAFTHSSYVNEHRYLKLSDNERLEFLGDAVLELIVS 73

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  F    EG+L+    ++V  ++ ++ A+E    ++I +             S+  
Sbjct: 74  QYLYLKFPELPEGKLTKMRAAIVREDSLAKFAKECHFDNYILLGKGEEASGGRTRASLLC 133

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + ALYLD  +  A  F++     +          D KT+LQE    K  V+ EY
Sbjct: 134 DLFEAFLGALYLDQKVGAAKKFIEDVIFPKIDAGAFSHEMDHKTQLQEVLQRKGDVSIEY 193

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           ++    GP HD  F   V ++G     G   SK+ AEQ AA   LK
Sbjct: 194 RLIKEEGPAHDRTFFTEVYMNGELIGLGQGKSKKLAEQDAAERALK 239


>gi|190149854|ref|YP_001968379.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|189914985|gb|ACE61237.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
          Length = 226

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 79/226 (34%), Positives = 119/226 (52%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ ++   L+K++ Y F N   L +ALTH S      ++ ERLEFLGD IL   I   LF
Sbjct: 1   MNNMQLERLQKKLSYQFTNLDYLLQALTHRSAG---AKNNERLEFLGDSILNFAIGKALF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELS    +LV  +T + +AR+  L  ++++ +   K       SI +D VE
Sbjct: 58  EKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++IAA+YLD G++ A   V  +++     +K G  ++D KT LQE+   +    P Y+V 
Sbjct: 118 AIIAAIYLDAGMDKAIEQVHLWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVL 177

Query: 179 FRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              G  H+  F V  +I        G+  S+R AEQ AA +VL + 
Sbjct: 178 DIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLVKL 223


>gi|119471905|ref|ZP_01614213.1| RNase III, ds RNA [Alteromonadales bacterium TW-7]
 gi|119445278|gb|EAW26568.1| RNase III, ds RNA [Alteromonadales bacterium TW-7]
          Length = 225

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 76/219 (34%), Positives = 114/219 (52%), Gaps = 5/219 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             + L  +IGY F+++ LLE+A+TH S      +  ERLEFLGD IL  +I+  L+  F 
Sbjct: 4   NVTELYNKIGYEFSDQGLLEQAMTHRS---HKGQHNERLEFLGDSILSFVIANALYAKFP 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            A+EG+LS   ++LV  +T ++   E  L  ++R+     K       S  AD VE++I 
Sbjct: 61  KAREGDLSRMRSTLVRGQTLAEFGVEFGLGDYLRLGPGELKSGGFRRESTLADAVEAIIG 120

Query: 125 ALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A +LD GIE     +  +++ R  A+  G  ++D KT LQE    +    P Y V    G
Sbjct: 121 AAFLDSGIERCSELILSWYESRLDAISPGLNQKDPKTLLQEHLQGRKLPLPGYTVVDTKG 180

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             H+  FTV   + G+     +  S+R AEQ AA + LK
Sbjct: 181 QAHNQTFTVECIVDGMDSIISVGSSRRKAEQKAAEKALK 219


>gi|167765553|ref|ZP_02437617.1| hypothetical protein CLOSS21_00047 [Clostridium sp. SS2/1]
 gi|317498509|ref|ZP_07956803.1| ribonuclease III [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167712738|gb|EDS23317.1| hypothetical protein CLOSS21_00047 [Clostridium sp. SS2/1]
 gi|291559019|emb|CBL37819.1| RNAse III [butyrate-producing bacterium SSC/2]
 gi|316894202|gb|EFV16390.1| ribonuclease III [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 228

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 113/226 (50%), Gaps = 5/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M A      +++IG  F   S L  A  HSS ++  +    ++ ERLEFLGD +L L+ S
Sbjct: 1   MDAKSVEEFQEQIGIKFHEPSRLWNAFIHSSYANERRMSKDKNNERLEFLGDAVLELVTS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS    SLV   T +  AR+++L  ++ +S            SI +
Sbjct: 61  NYLYRTYQKESEGKLSKIRASLVCEPTLAGCARDINLGKYVLLSKGEDMTGGRSRDSILS 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D  E++I A+YLD GIE A  F++ Y  +  +++     DAKT LQE    +     +Y 
Sbjct: 121 DAFEAVIGAIYLDQGIETATKFIETYLFK-DVENKVLFFDAKTNLQEIVQGEGKGRLKYV 179

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +    GPDH   FTV   +       G   SK++AEQ AA E +KR
Sbjct: 180 LVGEEGPDHAKIFTVEARLGENVIGTGSGHSKKSAEQHAAFEAIKR 225


>gi|332289238|ref|YP_004420090.1| ribonuclease III [Gallibacterium anatis UMN179]
 gi|330432134|gb|AEC17193.1| ribonuclease III [Gallibacterium anatis UMN179]
          Length = 226

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 76/228 (33%), Positives = 117/228 (51%), Gaps = 6/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+      L+ ++ Y F   +LL++ALTH S +  +    ERLEFLGD IL   I   L+
Sbjct: 1   MNNQHLDRLQNKLSYQFKKMALLQQALTHRSAASEH---NERLEFLGDSILNFTIGEALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F  + EG+LS    +LV  +T +Q+A E DL  ++++     K      +SI +D VE
Sbjct: 58  HQFPKSAEGDLSRMRATLVREQTLAQIAIEFDLGEYLKLGPGELKSGGYRRSSILSDCVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD   E     +  +++QR   +K G  ++D KT LQE+        P Y V 
Sbjct: 118 AIIGAIYLDSNFEKVKETILNWYQQRLAEIKPGDNQKDPKTRLQEYLQGIRQPLPTYNVV 177

Query: 179 FRSGPDHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
              G  H+  F V  +I       +G+  S+R AEQ AA ++L    I
Sbjct: 178 EIKGEAHNQTFKVTCKISQSDTLFEGIGSSRRKAEQAAAEKILSALKI 225


>gi|323351215|ref|ZP_08086871.1| ribonuclease III [Streptococcus sanguinis VMC66]
 gi|322122439|gb|EFX94150.1| ribonuclease III [Streptococcus sanguinis VMC66]
 gi|324991496|gb|EGC23429.1| ribonuclease III [Streptococcus sanguinis SK353]
 gi|328946755|gb|EGG40893.1| ribonuclease III [Streptococcus sanguinis SK1087]
          Length = 232

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 76/229 (33%), Positives = 118/229 (51%), Gaps = 8/229 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + LE+     F++ +LLE A TH+S ++ ++       ERLEFLGD +L L+IS
Sbjct: 1   MENLKKALLEQ-FDLVFSDETLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS   + +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYTKYPKRPEGDLSKLRSMIVREESLAGFARDCQFDHFIKLGRGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D+ E+ + AL LD G+E   +F+ +    + +++G F R  D KT+LQE       V   
Sbjct: 120 DLFEAFLGALLLDKGVEAVKSFLYQVMIPK-VEAGDFERVTDYKTKLQELLQINGDVEIT 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           Y+V   +GP H   F V V I+G    QG   SK+ AEQ AA    ++E
Sbjct: 179 YQVVSETGPAHAKNFEVAVLINGRKSGQGQGRSKKLAEQEAAKNAFEKE 227


>gi|239993708|ref|ZP_04714232.1| ribonuclease III [Alteromonas macleodii ATCC 27126]
          Length = 228

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 79/222 (35%), Positives = 120/222 (54%), Gaps = 6/222 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +Y  L K IGY F N +LLE+ALTH S +  +    ERLEFLGD ILG+++   LF  F 
Sbjct: 6   KYRRLYKAIGYTFTNEALLEQALTHRSAAKQH---NERLEFLGDAILGMIVGETLFKRFP 62

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EG+L+   ++LV  +T +++A+E  +   + +     K      +SI AD VE+++ 
Sbjct: 63  TVPEGKLTRMRSTLVKGDTLAELAKEASVGELLNLGPGELKSGGHRRSSILADAVEAILG 122

Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YLD G++     +D+ W+ R   L      +D+KT LQE+   +    P Y+V   SG
Sbjct: 123 AIYLDSGMDEVRGVIDRLWETRINKLDPNAHPKDSKTRLQEFLQGRKQALPTYEVLSISG 182

Query: 183 PDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKRE 223
            DH   F V  ++  L  A      S+R AEQ AA   L++ 
Sbjct: 183 KDHAQTFEVSCQVESLPEAVVASGNSRRKAEQEAARLTLEKL 224


>gi|327461014|gb|EGF07347.1| ribonuclease III [Streptococcus sanguinis SK1057]
          Length = 232

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 76/229 (33%), Positives = 117/229 (51%), Gaps = 8/229 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M   + + LE+     FA+ +LLE A TH+S ++ ++       ERLEFLGD +L L+IS
Sbjct: 1   MENFKKALLEQ-FDLVFADETLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS   + +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYTKYPKRPEGDLSKLRSMIVREESLAGFARDCQFDQFIKLGRGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D+ E+ + AL LD G+E   +F+ +    + +++G F R  D KT+LQE       V   
Sbjct: 120 DLFEAFLGALLLDKGVEAVKSFLYQVMIPK-VEAGDFERVTDYKTKLQELLQINGDVEIT 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           Y+V   +GP H   F V V I+G    QG   SK+ AEQ AA    ++E
Sbjct: 179 YQVVSETGPAHAKNFEVAVLINGRKSGQGQGRSKKLAEQEAAKNAFEKE 227


>gi|322389960|ref|ZP_08063500.1| ribonuclease III [Streptococcus parasanguinis ATCC 903]
 gi|321143396|gb|EFX38834.1| ribonuclease III [Streptococcus parasanguinis ATCC 903]
          Length = 242

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 116/227 (51%), Gaps = 8/227 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + L +R    F++ SLL+ A TH+S ++ ++       ERLEFLGD +L L+IS
Sbjct: 10  MEKLQ-TLLSERFQIVFSDSSLLDTAFTHTSYANEHRLLKISHNERLEFLGDAVLQLVIS 68

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+    +  EG+LS   + +V  E+ +  +R+     +I++     K       +I  
Sbjct: 69  EYLYKEHPNRPEGDLSKFRSMIVREESLAGFSRDCQFDHYIKLGKGEEKSGGRDRDTILG 128

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D+ E+ + AL LD G+E    F+ +    + +++G+F +  D KT LQE       V  +
Sbjct: 129 DLFEAFLGALLLDQGVEAVKRFIYQVMIPK-VETGQFSQVIDYKTRLQELLQVHGDVEIQ 187

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           Y+V   SGP H   F V V ++G     G   SK+ AEQ AA   ++
Sbjct: 188 YQVVSESGPAHAKEFEVEVFVNGKTLGHGHGRSKKLAEQEAARNAVE 234


>gi|260913782|ref|ZP_05920258.1| ribonuclease III [Pasteurella dagmatis ATCC 43325]
 gi|260632321|gb|EEX50496.1| ribonuclease III [Pasteurella dagmatis ATCC 43325]
          Length = 225

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 79/224 (35%), Positives = 116/224 (51%), Gaps = 7/224 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+      L++++GY+F   SLLE+ALTH S S ++    ERLEFLGD IL L I+  L+
Sbjct: 1   MNK-NLERLQRKLGYSFNQVSLLEQALTHRSASINH---NERLEFLGDAILNLTIAEALY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EGELS    +LV   T + +AR+ +L  ++ +     K       SI AD VE
Sbjct: 57  HQFPKCNEGELSRMRATLVREPTLAILARKFELGDYLSLGPGELKSGGFRRESILADCVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+ LD  +      V  ++K     +K G  ++D KT LQE+   K    P Y V 
Sbjct: 117 AIIGAISLDSNLPKTSKIVCNWYKSLLEEIKPGDNQKDPKTRLQEYLQGKRLPLPNYNVV 176

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLK 221
              G  H   FTV   +  +     G+  S+R AEQ AA ++L+
Sbjct: 177 DIKGEAHCQTFTVECYVKNIDRTFIGIGASRRKAEQAAAEKILQ 220


>gi|119944412|ref|YP_942092.1| ribonuclease III [Psychromonas ingrahamii 37]
 gi|189043334|sp|A1SSM8|RNC_PSYIN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|119863016|gb|ABM02493.1| RNAse III [Psychromonas ingrahamii 37]
          Length = 228

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 79/218 (36%), Positives = 114/218 (52%), Gaps = 5/218 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               LE+R+ Y F++ SLL++ALTH S         ERLEFLGD IL   IST L+  F 
Sbjct: 7   ELKRLERRVDYTFSDFSLLQQALTHRSA---LGNHNERLEFLGDSILSYAISTDLYARFP 63

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+LS    +LV  +  +++ RE  L   + +     K       SI AD VE++I 
Sbjct: 64  KVDEGDLSRMRATLVCGKMLAEIGREFQLGDCLILGPGELKSGGFRRDSIIADGVEAIIG 123

Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A +LD  I+     + K++  R   ++ G  ++D KT LQE   ++    P Y+V    G
Sbjct: 124 AAFLDSDIDTVKKLILKWFDSRLNTIEPGISQKDPKTRLQEHLQSRKQPLPIYEVLEIKG 183

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             H+ RFT+   I GL   QG   S+R AEQ+AA ++L
Sbjct: 184 EAHNQRFTMSCSIDGLKSVQGQGTSRRKAEQIAANKML 221


>gi|53804477|ref|YP_113920.1| ribonuclease III [Methylococcus capsulatus str. Bath]
 gi|81682093|sp|Q608M7|RNC_METCA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|53758238|gb|AAU92529.1| ribonuclease III [Methylococcus capsulatus str. Bath]
          Length = 230

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 72/222 (32%), Positives = 115/222 (51%), Gaps = 6/222 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +  L +++G  F +  LL  ALTH S       + ERLEFLGD +LG +++  L+  F 
Sbjct: 4   SHEHLARKLGIPFRDPGLLRNALTHRSA---EGVNNERLEFLGDSVLGFVVTEYLYQRFP 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           SA EG LS    +LV+  + +++AREL+L  ++ + S   K       SI +D +E+++ 
Sbjct: 61  SADEGVLSRLRATLVNETSLARIARELELGEYLILGSGELKSGGYRRDSILSDALEAILG 120

Query: 125 ALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+  D GI+     +   +++   AL    +++D KT LQE    +    P Y +  +SG
Sbjct: 121 AVLRDQGIDACRALILTLFERPLSALSLDDWKKDPKTRLQELMQGRGLPLPVYTLIDQSG 180

Query: 183 PDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             HD  F V  E+   + P  G   S++ AEQ AA  +L R 
Sbjct: 181 LPHDQHFRVRCEVPLAVEPCVGEGSSRKKAEQQAAENMLSRL 222


>gi|260892849|ref|YP_003238946.1| ribonuclease III [Ammonifex degensii KC4]
 gi|260864990|gb|ACX52096.1| ribonuclease III [Ammonifex degensii KC4]
          Length = 235

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 112/224 (50%), Gaps = 4/224 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61
           +  + L+ ++G ++    LL  ALTH S ++ +   E  +RLEFLGD +L L++S  L+ 
Sbjct: 1   MGLAKLKDKLGISWKEEKLLRLALTHPSYAYEHPGVEHNQRLEFLGDSVLSLVVSDYLYR 60

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F    EGEL+    ++V   + ++VA EL +   + +     K       S+ AD  E+
Sbjct: 61  TFPEKSEGELTRLRAAVVCEASLARVAEELGIGEALLLGRGEEKSGGRKRPSLLADAFEA 120

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           L+ A+YLD G+EVA  F     +   + +  G+  RD KTELQE           Y+V  
Sbjct: 121 LLGAIYLDQGLEVASAFALHLLRPVLQDVLEGRVERDYKTELQELLQKGSPEKIVYEVLQ 180

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             GPDH  RF V V   G    +G   SK+ AEQ AA E   + 
Sbjct: 181 EEGPDHAKRFLVGVYYQGKCLGRGEGRSKKEAEQRAAREAWLKL 224


>gi|240850197|ref|YP_002971590.1| ribonuclease III [Bartonella grahamii as4aup]
 gi|240267320|gb|ACS50908.1| ribonuclease III [Bartonella grahamii as4aup]
          Length = 235

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 119/226 (52%), Positives = 151/226 (66%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M  L    L K  G+ F +   L+KALTHSS+  S Q +YERLEFLGDR+LGLLI+ +L+
Sbjct: 1   MKRLMIDQLFKLTGHRFKDEERLKKALTHSSVQDSEQGNYERLEFLGDRVLGLLIAEMLY 60

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELSVR N LV+A+TC+ +ARE+ L   IRV  +++      + ++ ADVVE
Sbjct: 61  QLFPQASEGELSVRLNHLVNAQTCADIAREMRLPDMIRVGFEMKNFEGRRLINMHADVVE 120

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +LIA +YLDGG+E    F+ KYW  RA K    RRDAKTELQEWAH +    P Y+V  R
Sbjct: 121 ALIAVIYLDGGLESVRPFIQKYWHSRAKKMDAGRRDAKTELQEWAHIQGNAQPHYQVIKR 180

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           SGPDHDP F V V ISG A   G   SKR AE++AA ++L+REG+W
Sbjct: 181 SGPDHDPVFMVEVSISGFASEIGQGSSKRYAERMAAEKILRREGVW 226


>gi|302389624|ref|YP_003825445.1| RNAse III [Thermosediminibacter oceani DSM 16646]
 gi|302200252|gb|ADL07822.1| RNAse III [Thermosediminibacter oceani DSM 16646]
          Length = 241

 Score =  263 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 107/223 (47%), Gaps = 6/223 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTLLF 60
               L++ +G  F + ++L +A  H S ++     +QE  +RLEFLGD +L L+IS  ++
Sbjct: 10  ELKKLQQILGVDFDDLNILNQAFIHPSYAYEKGLSHQEHNQRLEFLGDAVLELVISEWIY 69

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + + +  EGEL+     LV  E+ + ++REL L  F+ +             SI AD  E
Sbjct: 70  DKYPNYTEGELTKLRALLVCEESLAYLSRELTLGDFLIMGKGEEITGGREKASILADTFE 129

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI A+YLD G      FV + +K    ++  GK   D KT LQE           Y V 
Sbjct: 130 ALIGAMYLDKGFGAITGFVREKFKPVMERAEKGKLFPDYKTALQEMLQRISPDRITYNVI 189

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              GPDH+  F V V         G   SK+ AEQ AA   ++
Sbjct: 190 KEEGPDHNKTFFVEVVWKNKILGSGCGKSKKEAEQNAAKAAIR 232


>gi|317057716|ref|YP_004106183.1| ribonuclease III [Ruminococcus albus 7]
 gi|315449985|gb|ADU23549.1| ribonuclease III [Ruminococcus albus 7]
          Length = 232

 Score =  263 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 79/224 (35%), Positives = 119/224 (53%), Gaps = 4/224 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNH 62
               +K+IGY F N  LL +AL+HSS ++  ++   S ERLEFLGD +L +++S  +F H
Sbjct: 7   LEAFQKKIGYHFKNEKLLYEALSHSSFANENKKQRHSNERLEFLGDSVLSIVVSDHIFEH 66

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EGEL+    SLV  +   + + +++L  +I +             SI +D +E++
Sbjct: 67  FKHLPEGELTKLRASLVCEKALFEFSHKIELGKYIFLGKGEELTGGRERASIVSDAMEAV 126

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           IAA+YLDGG+E A   +  +  +    +      D KT LQE          EY +    
Sbjct: 127 IAAIYLDGGLEAARKHIMNFLPKDLNPAHTDTFHDYKTVLQEIIQRNPEEKVEYFLKGED 186

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           GPDHD RFTV V+++     +G+  SK+ AEQ AA E L   G+
Sbjct: 187 GPDHDKRFTVQVKLNNNVIGEGIGRSKKNAEQNAAKEALALMGV 230


>gi|153810622|ref|ZP_01963290.1| hypothetical protein RUMOBE_01006 [Ruminococcus obeum ATCC 29174]
 gi|149833018|gb|EDM88100.1| hypothetical protein RUMOBE_01006 [Ruminococcus obeum ATCC 29174]
          Length = 223

 Score =  263 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 77/207 (37%), Positives = 111/207 (53%), Gaps = 5/207 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62
             LE+ IGY F N+ LL++ALTHSS ++  +       ERLEFLGD +L L+ S  L+  
Sbjct: 2   EQLEQIIGYTFQNKKLLKQALTHSSYANEKKLGKLGCNERLEFLGDAVLELISSDFLYAK 61

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EGEL+ +  SLV   + +  AR+  L  ++ +             SI +D  E+L
Sbjct: 62  FTQVPEGELTKKRASLVCEPSLAYCARQFGLPQYLLLGKGENMTGGRNRDSIVSDATEAL 121

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           + A+YLDGG E A  FV K+     ++  +   D+KT LQE    K     EY +T  SG
Sbjct: 122 LGAIYLDGGFEPAKDFVLKFIL-NDIEHKQLFYDSKTILQEIVQEKGIQPVEYILTGESG 180

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209
           PDHD +FTV V+++G     G   +K+
Sbjct: 181 PDHDKQFTVSVQVNGQVVGNGTGHTKK 207


>gi|327470651|gb|EGF16107.1| ribonuclease III [Streptococcus sanguinis SK330]
          Length = 232

 Score =  263 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 77/229 (33%), Positives = 118/229 (51%), Gaps = 8/229 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + LE+     F++ +LLE A TH+S ++ ++       ERLEFLGD +L L+IS
Sbjct: 1   MENLKKALLEQ-FDLVFSDETLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS   + +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYTKYPKRPEGDLSKLRSMIVREESLAGFARDCQFDQFIKLGRGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D+ E+ + AL LD G+E   +F+ +    + +++G F R  D KT+LQE       V   
Sbjct: 120 DLFEAFLGALLLDKGVEAVKSFLYQVMIPK-VEAGDFERVTDYKTKLQELLQINGDVEIA 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           Y+V   +GP H   F V V I+G    QG   SK+ AEQ AA    K+E
Sbjct: 179 YQVVSETGPAHAKNFEVAVLINGCKSGQGQGRSKKLAEQEAAKNAFKKE 227


>gi|90407379|ref|ZP_01215564.1| ribonuclease III [Psychromonas sp. CNPT3]
 gi|90311530|gb|EAS39630.1| ribonuclease III [Psychromonas sp. CNPT3]
          Length = 231

 Score =  263 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 82/222 (36%), Positives = 116/222 (52%), Gaps = 5/222 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M       LE+RIGY F N +LL++ALTH S         ERLEFLGD IL  +IST L+
Sbjct: 5   MKETELKRLERRIGYKFNNFALLKQALTHRSA---LGAHNERLEFLGDSILSFVISTDLY 61

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG+LS    +LV  +  +++ RE +L   + +     K       SI AD VE
Sbjct: 62  LRFPKVNEGDLSRMRATLVCGKMLAEIGREFELGDSLILGPGELKSGGFRRDSIIADGVE 121

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           S+I A++LD  I      V  ++  R   ++ G  ++D KT LQE   ++    P Y+V 
Sbjct: 122 SIIGAVFLDSDINSVDRLVLAWFNSRLTTIEPGIGQKDPKTRLQEHLQSRKQGLPLYEVL 181

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
              G  H+ RFT+   I G+   QG   S+R AEQ+AA ++L
Sbjct: 182 EIRGEAHNQRFTMSCIIDGIEAVQGQGTSRRKAEQIAAEKML 223


>gi|332140432|ref|YP_004426170.1| ribonuclease III [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550454|gb|AEA97172.1| ribonuclease III [Alteromonas macleodii str. 'Deep ecotype']
          Length = 228

 Score =  263 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 80/222 (36%), Positives = 120/222 (54%), Gaps = 6/222 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +Y  L K IGY F N +LLE+ALTH S +  +    ERLEFLGD ILG++I   LF  F 
Sbjct: 6   KYLRLYKAIGYTFNNEALLEQALTHRSAAKQH---NERLEFLGDAILGMIIGETLFKRFP 62

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EG+L+   ++LV  +T +++A+E  +   + +     K      +SI AD VE+++ 
Sbjct: 63  TVPEGKLTRMRSTLVKGDTLAELAKEASVGELLNLGPGELKSGGHRRSSILADAVEAILG 122

Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YLD G++     +D+ W+ R   L      +D+KT LQE+   +    P Y+V   SG
Sbjct: 123 AIYLDSGMDEVRGVIDRLWESRINQLDPNAHPKDSKTRLQEFLQGRKQALPTYEVLSISG 182

Query: 183 PDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKRE 223
            DH   F V  ++  L  A      S+R AEQ AA   L++ 
Sbjct: 183 KDHAQTFEVCCKVESLPDAVVASGNSRRKAEQEAARLTLEKL 224


>gi|307276679|ref|ZP_07557797.1| ribonuclease III [Enterococcus faecalis TX2134]
 gi|306506789|gb|EFM75941.1| ribonuclease III [Enterococcus faecalis TX2134]
          Length = 243

 Score =  263 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 110/226 (48%), Gaps = 5/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M     + L++R G  F + +LLE+A THSS  + ++       ERLEFLGD +L L++S
Sbjct: 14  MDNQLTTELKERYGIVFHDVNLLEQAFTHSSYVNEHRYLKLSDNERLEFLGDAVLELIVS 73

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  F    EG+L+    ++V  ++ ++ A+E    ++I +             S+  
Sbjct: 74  QYLYLKFPELPEGKLTKMRAAIVREDSLAKFAKECHFDNYILLGKGEEASGGRTRASLLC 133

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + ALYLD  +  A  F++     +          D KT+LQE    K  V+ EY
Sbjct: 134 DLFEAFLGALYLDQKVGAAKKFIEDVIFPKIDAGAFSHELDHKTQLQEVLQRKGDVSIEY 193

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           ++    GP HD  F   V ++G     G   SK+ AEQ AA   LK
Sbjct: 194 RLIKEEGPAHDRTFFTEVYMNGELIGLGQGKSKKLAEQDAAERALK 239


>gi|125718368|ref|YP_001035501.1| ribonuclease III [Streptococcus sanguinis SK36]
 gi|189043368|sp|A3CP46|RNC_STRSV RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|125498285|gb|ABN44951.1| Ribonuclease III, putative [Streptococcus sanguinis SK36]
 gi|324994823|gb|EGC26736.1| ribonuclease III [Streptococcus sanguinis SK678]
 gi|325687264|gb|EGD29286.1| ribonuclease III [Streptococcus sanguinis SK72]
 gi|325694850|gb|EGD36755.1| ribonuclease III [Streptococcus sanguinis SK150]
 gi|332358679|gb|EGJ36502.1| ribonuclease III [Streptococcus sanguinis SK355]
 gi|332358950|gb|EGJ36771.1| ribonuclease III [Streptococcus sanguinis SK49]
          Length = 232

 Score =  262 bits (671), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 76/229 (33%), Positives = 118/229 (51%), Gaps = 8/229 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + LE+     F++ +LLE A TH+S ++ ++       ERLEFLGD +L L+IS
Sbjct: 1   MENLKKALLEQ-FDLVFSDETLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS   + +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYTKYPKRPEGDLSKLRSMIVREESLAGFARDCQFDQFIKLGRGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D+ E+ + AL LD G+E   +F+ +    + +++G F R  D KT+LQE       V   
Sbjct: 120 DLFEAFLGALLLDKGVEAVKSFLYQVMIPK-VEAGDFERVTDYKTKLQELLQINGDVEIA 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           Y+V   +GP H   F V V I+G    QG   SK+ AEQ AA    ++E
Sbjct: 179 YQVVSETGPAHAKNFEVAVLINGRKSGQGQGRSKKLAEQEAAKNAFEKE 227


>gi|315634822|ref|ZP_07890104.1| ribonuclease III [Aggregatibacter segnis ATCC 33393]
 gi|315476374|gb|EFU67124.1| ribonuclease III [Aggregatibacter segnis ATCC 33393]
          Length = 226

 Score =  262 bits (671), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 79/228 (34%), Positives = 115/228 (50%), Gaps = 6/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M       L+++I Y F + +LL++ALTH S  H++    ERLEFLGD IL L I+  LF
Sbjct: 1   MREDNLDRLQRKIDYHFQDVALLKQALTHRSAGHNH---NERLEFLGDAILNLTIAEALF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EGELS    +LV   T + +AR+  L  ++ +     K       SI AD VE
Sbjct: 58  HLFPKCNEGELSRMRATLVREPTLAILARDFQLGDYLSLGQGELKSGGFRRESILADCVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+ LD  +  A   V+++++     +K G  ++DAKT LQE+        P Y V 
Sbjct: 118 AIIGAISLDSSLTHATQIVNRWYQTLLENIKPGDNQKDAKTRLQEYLQGNRQPLPTYNVV 177

Query: 179 FRSGPDHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
              G  H+  F V   I        G   S+R AEQ AA ++L+   I
Sbjct: 178 SIQGEAHNQLFIVECSISDNDRTFIGKGSSRRKAEQAAAEQILQELNI 225


>gi|261368258|ref|ZP_05981141.1| ribonuclease III [Subdoligranulum variabile DSM 15176]
 gi|282569773|gb|EFB75308.1| ribonuclease III [Subdoligranulum variabile DSM 15176]
          Length = 225

 Score =  262 bits (671), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 80/226 (35%), Positives = 118/226 (52%), Gaps = 8/226 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLIST 57
           M+  +   L++ + Y F N +LL  ALTH+S ++  +      ERLEFLGD +L ++ + 
Sbjct: 1   MATHKPEELQEVLHYQFKNPALLRIALTHTSYANESKVPTTHNERLEFLGDSVLSVVAAD 60

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF+      EGEL+    SLVS +   Q A+E+ L  ++R+             S+ +D
Sbjct: 61  YLFHQ-SDRPEGELTRMRASLVSEDALFQFAQEIRLGDYLRLGHGEDLGGGRNRPSVVSD 119

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
             E++IAALYLDGG+EVA +F+  +  +          D KT LQE           Y+V
Sbjct: 120 AFEAVIAALYLDGGLEVARSFILPFLSE----GKTAEEDYKTRLQEVVQQNPSARLRYEV 175

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              +GPDH  +FTV V       A+G+  SK+AAEQ AA + L R 
Sbjct: 176 EGETGPDHAKQFTVAVYCDDKRLAEGVGRSKKAAEQHAAKQALDRL 221


>gi|293365563|ref|ZP_06612272.1| ribonuclease III [Streptococcus oralis ATCC 35037]
 gi|315613276|ref|ZP_07888185.1| ribonuclease III [Streptococcus sanguinis ATCC 49296]
 gi|291315931|gb|EFE56375.1| ribonuclease III [Streptococcus oralis ATCC 35037]
 gi|315314511|gb|EFU62554.1| ribonuclease III [Streptococcus sanguinis ATCC 49296]
          Length = 232

 Score =  262 bits (671), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 112/227 (49%), Gaps = 6/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + L+KR    FA+++LLE A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MKELQ-TVLKKRFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS     +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEY 175
           D  E+ + AL LD  +     F+ +    +      +  +D KT LQE       V   Y
Sbjct: 120 DAFEAFLGALLLDKDVARVKEFIYQVMIPKVEAGDFEMIKDYKTHLQELLQVNGDVDIRY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +VT  +GP HD  F V V + G +  +G   SK+ AEQ AA   +++
Sbjct: 180 QVTSETGPAHDKVFDVEVLVEGKSIGKGQGRSKKLAEQEAAKNAVEK 226


>gi|146341377|ref|YP_001206425.1| ribonuclease III (modular protein) [Bradyrhizobium sp. ORS278]
 gi|146194183|emb|CAL78204.1| ribonuclease III (modular protein) [Bradyrhizobium sp. ORS278]
          Length = 357

 Score =  262 bits (671), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 100/217 (46%), Positives = 137/217 (63%), Gaps = 3/217 (1%)

Query: 12  RIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           RIG+ FA+ SLL  A TH S    S    +SY+RLEFLGD +LGL++S +L+  F SA E
Sbjct: 134 RIGHRFADPSLLSTAFTHVSALKSSKKRGDSYQRLEFLGDHVLGLIVSDMLYRAFPSADE 193

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELS R   LV  E+C+ VA+ L L   I++ +           S+  DV E++I A++L
Sbjct: 194 GELSKRLADLVRKESCADVAKSLGLLDDIKLGAVGAGAGARLRKSVLGDVCEAVIGAIFL 253

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           DGG   A  FV++ W +R  K  +  RD KT LQEWA  K   TP Y+   R+GP HDP+
Sbjct: 254 DGGYTAAAGFVERNWTERMRKPRRPLRDPKTVLQEWAQGKGLPTPVYREVERTGPHHDPQ 313

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           F V V++ GL PA+G+  SKRAAE+VAA+ +++REG+
Sbjct: 314 FRVAVDLPGLEPAEGVGGSKRAAEKVAASVMIEREGV 350


>gi|306825115|ref|ZP_07458457.1| ribonuclease III [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304432551|gb|EFM35525.1| ribonuclease III [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 232

 Score =  262 bits (671), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 112/227 (49%), Gaps = 6/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + L+KR    FA+++LLE A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MKELQ-TVLKKRFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS     +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEY 175
           D  E+ + AL LD  +     F+ +    +      +  +D KT LQE       V   Y
Sbjct: 120 DAFEAFLGALLLDKDVARVKEFIYQVMIPKVEAGDFEMIKDYKTHLQELLQVNGDVDIRY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +VT  +GP HD  F V V + G +  +G   SK+ AEQ AA   +++
Sbjct: 180 QVTSETGPAHDKVFDVEVLVEGKSIGKGQGRSKKLAEQEAAKNAVEK 226


>gi|261868615|ref|YP_003256537.1| ribonuclease III [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261413947|gb|ACX83318.1| ribonuclease III [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 226

 Score =  262 bits (671), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 80/228 (35%), Positives = 113/228 (49%), Gaps = 6/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M   +   L+++I Y F N  LL++ALTH S  H +    ERLEFLGD IL L I   LF
Sbjct: 1   MKENQLERLQRQINYRFQNIELLKQALTHRSAGHQH---NERLEFLGDAILNLTIGEALF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EGELS    +LV   T + +AR+  L  +I +     K       SI AD VE
Sbjct: 58  HQFPKCNEGELSRMRATLVREPTLALLARDFKLGDYILLGQGELKSGGFRRESILADCVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+ LD  +  A   V ++++   + +K G  ++DAKT LQE+        P Y + 
Sbjct: 118 AIIGAISLDSSLTNATQIVCQWYQNLLKEIKPGDNQKDAKTRLQEYLQGNRLPLPTYNIV 177

Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKREGI 225
              G  H+  F V   I        G   S+R AEQ AA ++L+   I
Sbjct: 178 NIQGEAHNQLFIVECSIQNSDRTFIGKGSSRRKAEQAAAEQILQELNI 225


>gi|302670933|ref|YP_003830893.1| ribonuclease III Rnc [Butyrivibrio proteoclasticus B316]
 gi|302395406|gb|ADL34311.1| ribonuclease III Rnc [Butyrivibrio proteoclasticus B316]
          Length = 230

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 81/224 (36%), Positives = 117/224 (52%), Gaps = 5/224 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           ++       ++ IGY F N  LL +ALTHSS  +  +      YERLEFLGD IL ++ S
Sbjct: 2   LNEQEIINFQQVIGYKFKNIDLLIQALTHSSFVNEQKINKKPDYERLEFLGDAILEMVSS 61

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  +   KEGE+S    SLV     +  A  ++L  +I++             SI A
Sbjct: 62  EYLFKKYPDKKEGEMSKIRASLVCEPALAFCAEHIELKKYIQLGKGEELTGGRNKESIIA 121

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           DV+E++I AL+LDGG++ +  F+D Y    A  S     D+K+ LQE+  A      +Y+
Sbjct: 122 DVMEAVIGALFLDGGLQESKRFIDTYVLTNA-DSMAMFNDSKSLLQEFVQAGGLGQIKYE 180

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +   SGP+HD  F V V I      +G   +K+AAEQ AA + L
Sbjct: 181 ICGESGPEHDKIFDVRVWIGDKNMGEGTGKTKKAAEQKAAYQAL 224


>gi|293391848|ref|ZP_06636182.1| ribonuclease III [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290952382|gb|EFE02501.1| ribonuclease III [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 226

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 80/228 (35%), Positives = 113/228 (49%), Gaps = 6/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M   +   L+++I Y F N  LL++ALTH S  H +    ERLEFLGD IL L I   LF
Sbjct: 1   MKENQLERLQRQINYRFQNIELLKQALTHRSAGHQH---NERLEFLGDAILNLTIGEALF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EGELS    +LV   T + +AR+  L  +I +     K       SI AD VE
Sbjct: 58  HQFPKCNEGELSRMRATLVREPTLALLARDFKLGDYILLGQGELKSGGFRRESILADCVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+ LD  +  A   V ++++   + +K G  ++DAKT LQE+        P Y + 
Sbjct: 118 AIIGAISLDSNLTNATQIVCQWYQNLLKEIKPGDNQKDAKTRLQEYLQGNRLPLPTYNIV 177

Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKREGI 225
              G  H+  F V   I        G   S+R AEQ AA ++L+   I
Sbjct: 178 NIQGEAHNQLFIVECSIQNSDRTFIGKGSSRRKAEQAAAEQILQELNI 225


>gi|229828999|ref|ZP_04455068.1| hypothetical protein GCWU000342_01084 [Shuttleworthia satelles DSM
           14600]
 gi|229792162|gb|EEP28276.1| hypothetical protein GCWU000342_01084 [Shuttleworthia satelles DSM
           14600]
          Length = 230

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 79/221 (35%), Positives = 119/221 (53%), Gaps = 5/221 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59
           +R  TLE +IGY F ++SLL +ALTHSS ++          ERLEFLGD +L ++ S  L
Sbjct: 1   MRNETLEAKIGYQFQDKSLLRQALTHSSFANERHMKAHSDNERLEFLGDAVLEVVSSEFL 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           + ++    EG L+    SLV   T +  ARE+ L + +R++    +       SI +D +
Sbjct: 61  YLNYPDLPEGRLTPLRASLVCEPTLAIAAREIGLGACLRLARGEDQSGGRERDSILSDAL 120

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E++I A++LDGGIE A   + +Y     ++  K   D+KT LQE   A    + +Y +  
Sbjct: 121 EAVIGAVFLDGGIEPAKALIIRYILT-DIEHKKLYHDSKTRLQEMVQAMEEASLDYVLVR 179

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             GPDH  RF     + G    +G   SK+A+EQ AA + L
Sbjct: 180 EEGPDHAKRFVTEARLDGRTIGRGEGGSKKASEQEAAYQGL 220


>gi|78044311|ref|YP_360276.1| ribonuclease III [Carboxydothermus hydrogenoformans Z-2901]
 gi|90101616|sp|Q3AC58|RNC_CARHZ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|77996426|gb|ABB15325.1| ribonuclease III [Carboxydothermus hydrogenoformans Z-2901]
          Length = 235

 Score =  262 bits (670), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 78/227 (34%), Positives = 117/227 (51%), Gaps = 6/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M      +LEK +G+ F N S+L  A+TH S +  + E      ERLEFLGD +L L IS
Sbjct: 1   MDKENLISLEKILGFNFNNPSILLSAITHPSYAFEHPEEGIEHNERLEFLGDAVLELFIS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  F    EG+L+   + LV AE+  ++A +++L  F+R+     K   +   S  A
Sbjct: 61  DYLFRTFPQKSEGDLTKLRSRLVCAESLYELAFKINLDKFLRLGKGEFKAGGNQRMSNLA 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPE 174
           + VE++I A+Y D GIE A +F+ + + ++       +  +D KT LQE    +      
Sbjct: 121 NAVEAVIGAVYFDCGIEAAFSFITRLYGEKLKPENLEQLPKDEKTTLQELLQKEKNNVLR 180

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           Y++    GP H   FT  V I+    A G   SK+ AEQ AA + L+
Sbjct: 181 YEILLEEGPPHQKIFTAGVIINDKLIATGRGKSKKEAEQEAAKKALE 227


>gi|301058150|ref|ZP_07199202.1| ribonuclease III [delta proteobacterium NaphS2]
 gi|300447782|gb|EFK11495.1| ribonuclease III [delta proteobacterium NaphS2]
          Length = 236

 Score =  262 bits (670), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 76/225 (33%), Positives = 119/225 (52%), Gaps = 6/225 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
            + +L + +GY+F + +L+ +A  HSS  +       E  ERLEFLGD +L L +S LL 
Sbjct: 9   EFKSLCETLGYSFNDIALVIQAFRHSSYVNEQMVPGLEDNERLEFLGDAVLDLAVSHLLM 68

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                A EGELS   + +V       VA  L+L  ++ +     + +     SI ADV E
Sbjct: 69  ERNPHANEGELSRFRSMVVDEAGLHDVATRLELGRYLLLGKGEDQSLGRQKPSILADVTE 128

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +L+ A+YLDGG ++    ++K +      + +    +D K+ LQE+    F   P+Y++T
Sbjct: 129 ALLGAIYLDGGFDITKKVIEKLFAPLLEKVGTDDLVQDYKSLLQEFTQQAFKCLPQYRLT 188

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              GP HD  F +V+ ++G+  A+GM  SK+ AEQ AA E   R 
Sbjct: 189 EEKGPAHDKVFCIVLAVNGIVMAEGMGKSKKEAEQHAAKEAFLRL 233


>gi|296876109|ref|ZP_06900163.1| ribonuclease III [Streptococcus parasanguinis ATCC 15912]
 gi|296432820|gb|EFH18613.1| ribonuclease III [Streptococcus parasanguinis ATCC 15912]
          Length = 233

 Score =  262 bits (670), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 116/227 (51%), Gaps = 8/227 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + L +R    F++ SLL+ A TH+S ++ ++       ERLEFLGD +L L+IS
Sbjct: 1   MEKLQ-ALLLERFQIVFSDSSLLDTAFTHTSYANEHRLLKISHNERLEFLGDAVLQLVIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+    +  EG+LS   + +V  E+ +  +R+     +I++     K       +I  
Sbjct: 60  EYLYKEHPNRPEGDLSKFRSMIVREESLAGFSRDCQFDRYIKLGKGEEKSGGRDRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D+ E+ + AL LD G+E    F+ +    + +++G+F +  D KT LQE       V  +
Sbjct: 120 DLFEAFLGALLLDQGVEAVKRFIYQVMIPK-VETGQFSQVIDYKTRLQELLQVHGDVEIQ 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           Y+V   SGP H   F V V ++G     G   SK+ AEQ AA   ++
Sbjct: 179 YQVVSESGPAHAKEFEVEVFVNGQTMGHGHGRSKKLAEQEAARNAVE 225


>gi|124515064|gb|EAY56575.1| ribonuclease III [Leptospirillum rubarum]
          Length = 247

 Score =  262 bits (670), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 117/226 (51%), Gaps = 7/226 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-----SYERLEFLGDRILGLLISTLL 59
             S LE R+ Y F    LLE+A TH S  +  +      + ERLEFLGD +LGL+++  L
Sbjct: 6   DLSELEDRLRYRFRKIDLLEEATTHKSFMNEGRRLGVTRNNERLEFLGDTVLGLVVAEYL 65

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
              +    EG LS     +VS  T + V+R L +  F+ +            +S+ AD +
Sbjct: 66  MVTYPKYPEGILSKFKGRVVSEPTLASVSRALGIGGFLLIGKGEELTQGREKSSLLADAM 125

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E++IAA+YLD G++ A TF+  +++    ++      +D KT+LQE+   +    P Y+V
Sbjct: 126 EAVIAAIYLDSGLDAARTFIIGHFRSVIEQTVHEDSIQDYKTDLQEYCQRELETLPVYQV 185

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             + GPDH   F V V I G    +G   SK+ AEQ AA + L R 
Sbjct: 186 MDQRGPDHQKEFDVAVLIRGKIYGEGSGKSKKEAEQKAAKDALSRL 231


>gi|29377554|ref|NP_816708.1| ribonuclease III [Enterococcus faecalis V583]
 gi|255970707|ref|ZP_05421293.1| ribonuclease III [Enterococcus faecalis T1]
 gi|255974283|ref|ZP_05424869.1| ribonuclease III [Enterococcus faecalis T2]
 gi|256618145|ref|ZP_05474991.1| ribonuclease III [Enterococcus faecalis ATCC 4200]
 gi|256761074|ref|ZP_05501654.1| ribonuclease III [Enterococcus faecalis T3]
 gi|256958378|ref|ZP_05562549.1| ribonuclease III [Enterococcus faecalis DS5]
 gi|256960445|ref|ZP_05564616.1| ribonuclease III [Enterococcus faecalis Merz96]
 gi|256962935|ref|ZP_05567106.1| ribonuclease III [Enterococcus faecalis HIP11704]
 gi|257078311|ref|ZP_05572672.1| ribonuclease III [Enterococcus faecalis JH1]
 gi|257080500|ref|ZP_05574861.1| ribonuclease III [Enterococcus faecalis E1Sol]
 gi|257083236|ref|ZP_05577597.1| ribonuclease III [Enterococcus faecalis Fly1]
 gi|257088212|ref|ZP_05582573.1| ribonuclease III [Enterococcus faecalis D6]
 gi|257091337|ref|ZP_05585698.1| ribonuclease III [Enterococcus faecalis CH188]
 gi|257417226|ref|ZP_05594220.1| ribonuclease III [Enterococcus faecalis AR01/DG]
 gi|257417943|ref|ZP_05594937.1| ribonuclease III [Enterococcus faecalis T11]
 gi|257420449|ref|ZP_05597439.1| ribonuclease III [Enterococcus faecalis X98]
 gi|294780225|ref|ZP_06745597.1| ribonuclease III [Enterococcus faecalis PC1.1]
 gi|300861565|ref|ZP_07107649.1| ribonuclease III [Enterococcus faecalis TUSoD Ef11]
 gi|75541427|sp|Q82ZG1|RNC_ENTFA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|29345021|gb|AAO82778.1| ribonuclease III [Enterococcus faecalis V583]
 gi|255961725|gb|EET94201.1| ribonuclease III [Enterococcus faecalis T1]
 gi|255967155|gb|EET97777.1| ribonuclease III [Enterococcus faecalis T2]
 gi|256597672|gb|EEU16848.1| ribonuclease III [Enterococcus faecalis ATCC 4200]
 gi|256682325|gb|EEU22020.1| ribonuclease III [Enterococcus faecalis T3]
 gi|256948874|gb|EEU65506.1| ribonuclease III [Enterococcus faecalis DS5]
 gi|256950941|gb|EEU67573.1| ribonuclease III [Enterococcus faecalis Merz96]
 gi|256953431|gb|EEU70063.1| ribonuclease III [Enterococcus faecalis HIP11704]
 gi|256986341|gb|EEU73643.1| ribonuclease III [Enterococcus faecalis JH1]
 gi|256988530|gb|EEU75832.1| ribonuclease III [Enterococcus faecalis E1Sol]
 gi|256991266|gb|EEU78568.1| ribonuclease III [Enterococcus faecalis Fly1]
 gi|256996242|gb|EEU83544.1| ribonuclease III [Enterococcus faecalis D6]
 gi|257000149|gb|EEU86669.1| ribonuclease III [Enterococcus faecalis CH188]
 gi|257159054|gb|EEU89014.1| ribonuclease III [Enterococcus faecalis ARO1/DG]
 gi|257159771|gb|EEU89731.1| ribonuclease III [Enterococcus faecalis T11]
 gi|257162273|gb|EEU92233.1| ribonuclease III [Enterococcus faecalis X98]
 gi|294452768|gb|EFG21198.1| ribonuclease III [Enterococcus faecalis PC1.1]
 gi|295114417|emb|CBL33054.1| RNAse III [Enterococcus sp. 7L76]
 gi|300849026|gb|EFK76779.1| ribonuclease III [Enterococcus faecalis TUSoD Ef11]
          Length = 230

 Score =  262 bits (670), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 110/226 (48%), Gaps = 5/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M     + L++R G  F + +LLE+A THSS  + ++       ERLEFLGD +L L++S
Sbjct: 1   MDNQLTTELKERYGIVFHDVNLLEQAFTHSSYVNEHRYLKLSDNERLEFLGDAVLELIVS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  F    EG+L+    ++V  ++ ++ A+E    ++I +             S+  
Sbjct: 61  QYLYLKFPELPEGKLTKMRAAIVREDSLAKFAKECHFDNYILLGKGEEASGGRTRASLLC 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + ALYLD  +  A  F++     +          D KT+LQE    K  V+ EY
Sbjct: 121 DLFEAFLGALYLDQKVGAAKKFIEDVIFPKIDAGAFSHEMDHKTQLQEVLQRKGDVSIEY 180

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           ++    GP HD  F   V ++G     G   SK+ AEQ AA   LK
Sbjct: 181 RLIKEEGPAHDRTFFTEVYMNGELIGLGQGKSKKLAEQDAAERALK 226


>gi|99035124|ref|ZP_01314908.1| hypothetical protein Wendoof_01000254 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 234

 Score =  262 bits (670), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 84/228 (36%), Positives = 126/228 (55%), Gaps = 5/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLIS 56
           M +L    + K I Y F N ++LE+ALTH S++    ++    YERLEFLGD +L +++S
Sbjct: 3   MKSLN-DAISKIIDYKFTNYAILEEALTHPSVNKRNSKNQIVSYERLEFLGDSVLNMVVS 61

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  F   KEG L+ R   LV   T + VA+E+ L SFI +++  R +          
Sbjct: 62  ATLFKLFPEEKEGALAKRKTDLVCGNTIANVAKEIKLGSFIIMNNSERCNGGRCNLKNLE 121

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           + +E+LI A+Y+DGG+E    F+ +YW++ A       +D KT LQEW        PEY+
Sbjct: 122 NSLEALIGAIYIDGGLENVEKFIIQYWEKLAKGMLDPPQDPKTSLQEWTQKNKLPLPEYE 181

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +  ++GP H+P FT+ V I           SK+ AEQ AA  +L++ G
Sbjct: 182 LVKQTGPAHNPEFTISVCIEDYGKVSACASSKKIAEQKAAELMLEKIG 229


>gi|167854942|ref|ZP_02477717.1| GTP-binding protein LepA [Haemophilus parasuis 29755]
 gi|167853899|gb|EDS25138.1| GTP-binding protein LepA [Haemophilus parasuis 29755]
          Length = 223

 Score =  262 bits (670), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 82/225 (36%), Positives = 125/225 (55%), Gaps = 6/225 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++   L+K++GY FAN   L +ALTH S +    ++ ERLEFLGD IL   I   L+  F
Sbjct: 1   MQLERLQKKLGYQFANLDYLTQALTHRSAA---SKNNERLEFLGDSILNFAIGKALYEKF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EGELS    +LV  +T + VAR+ +L  ++++ +   K       SI +D VE++I
Sbjct: 58  PKADEGELSRMRAALVKEQTLAVVARQFELGEYMKLGAGELKSGGYRRESILSDCVEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+YLD GI+ A   V  +++Q    ++ G+ ++D KT LQE+   +    P Y+V    
Sbjct: 118 AAVYLDAGIDRAMERVHCWYQQLLNDMQLGEAQKDPKTRLQEYLQGRKLPLPTYEVIDIK 177

Query: 182 GPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225
           G  H+  F V  ++  +     G   S+R AEQ AA +V+K  GI
Sbjct: 178 GEAHNQTFKVSCKVEKVDEIFIGNGTSRRKAEQDAALQVIKVLGI 222


>gi|323144165|ref|ZP_08078801.1| ribonuclease III [Succinatimonas hippei YIT 12066]
 gi|322416073|gb|EFY06771.1| ribonuclease III [Succinatimonas hippei YIT 12066]
          Length = 233

 Score =  262 bits (670), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 88/224 (39%), Positives = 121/224 (54%), Gaps = 8/224 (3%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +      LE  IGYAF N SLLE+ALTH S         ERLEFLGD ILG++I+  L+ 
Sbjct: 6   NIFALHQLEITIGYAFQNLSLLEQALTHRSFG---PVHNERLEFLGDSILGMVIAKKLYA 62

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F    EG+L+   +SLV   T +++ARE  L + +R+     K   +   S+ AD VES
Sbjct: 63  MFPHNPEGDLTRMRSSLVRETTLAELAREFGLGNCLRLGPGELKTGGARRDSLLADAVES 122

Query: 122 LIAALYLDGG--IEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           +IAA+YLD G   +     V  ++  R   +     ++D K+ LQE   ++    P+YKV
Sbjct: 123 VIAAMYLDSGEEFDTVRQIVLSWFHSRLKTINPKVNQKDPKSSLQELLQSQHKPLPQYKV 182

Query: 178 TFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVL 220
              SG D+D  FTV V + G+     G   SKR AEQVAA  +L
Sbjct: 183 VNISGTDNDQVFTVEVCVEGVSEKFSGKGSSKRRAEQVAAQHLL 226


>gi|163867992|ref|YP_001609196.1| ribonuclease III [Bartonella tribocorum CIP 105476]
 gi|189043294|sp|A9IRN0|RNC_BART1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|161017643|emb|CAK01201.1| ribonuclease III [Bartonella tribocorum CIP 105476]
          Length = 235

 Score =  261 bits (669), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 117/226 (51%), Positives = 152/226 (67%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M  L    L K  G+ F +   L++ALTH+S+  S Q +YERLEFLGDR+LGLLI+ +L+
Sbjct: 1   MRRLMIDQLFKLTGHRFKDEEKLKRALTHASVQDSEQGNYERLEFLGDRVLGLLIAEMLY 60

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELSVR N LV+A+TC+ +ARE+ L   I+V  ++R      + ++ ADVVE
Sbjct: 61  QLFPQASEGELSVRLNHLVNAQTCADIAREMRLPDMIQVGFEMRNFEGRRLINMHADVVE 120

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +LIA +YLDGG+E    F+ KYW+ RA K    RRDAKTELQEWAH +    P Y+V  R
Sbjct: 121 ALIAVMYLDGGLESVRPFIQKYWQSRAKKMDAGRRDAKTELQEWAHIQGDAQPHYQVIKR 180

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           SGPDHDP F V V ISG A   G   SKR AE++AA ++L+REG+W
Sbjct: 181 SGPDHDPVFMVEVSISGFASEIGQGSSKRNAERMAAEKILRREGVW 226


>gi|154500966|ref|ZP_02039004.1| hypothetical protein BACCAP_04652 [Bacteroides capillosus ATCC
           29799]
 gi|150269990|gb|EDM97509.1| hypothetical protein BACCAP_04652 [Bacteroides capillosus ATCC
           29799]
          Length = 223

 Score =  261 bits (669), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 78/212 (36%), Positives = 120/212 (56%), Gaps = 5/212 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62
             LE+++GY F NR+LLE ALTHSS ++  +    +S ERLEFLGD +LG++ +  L+  
Sbjct: 2   EKLEEKLGYTFQNRALLENALTHSSYANENKHTGAQSNERLEFLGDSVLGMVTADYLYRV 61

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
                EG+L+    +LV   +  +VA++L+L +++++             SI AD VE++
Sbjct: 62  HPDLPEGDLTRTRAALVCEGSLVEVAQQLELGTYLKLGKGEDAGGGRERPSIVADAVEAV 121

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +AA+YLDGGI  A   + ++   R  +     RD KT LQE    + G    Y++   +G
Sbjct: 122 LAAVYLDGGIGSARKIIQRFILDRE-EEKSGSRDYKTALQELVQRESGQVLAYRLVGSTG 180

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           PDH  RF V VE++G     G   SK+ AEQ+
Sbjct: 181 PDHAKRFQVEVELNGTPVGAGEGRSKKEAEQM 212


>gi|125973448|ref|YP_001037358.1| ribonuclease III [Clostridium thermocellum ATCC 27405]
 gi|256005344|ref|ZP_05430309.1| ribonuclease III [Clostridium thermocellum DSM 2360]
 gi|281417648|ref|ZP_06248668.1| ribonuclease III [Clostridium thermocellum JW20]
 gi|125713673|gb|ABN52165.1| RNAse III [Clostridium thermocellum ATCC 27405]
 gi|255990663|gb|EEU00780.1| ribonuclease III [Clostridium thermocellum DSM 2360]
 gi|281409050|gb|EFB39308.1| ribonuclease III [Clostridium thermocellum JW20]
 gi|316940315|gb|ADU74349.1| ribonuclease III [Clostridium thermocellum DSM 1313]
          Length = 236

 Score =  261 bits (669), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 113/223 (50%), Gaps = 6/223 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
            + LE+ I Y F ++  L  ALTHSS ++  ++    S ERLEFLGD +L +++S  ++ 
Sbjct: 11  INELERVIDYCFEDKMKLVLALTHSSYANECRDERITSNERLEFLGDTVLNMVVSEYIYK 70

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     EGE++    ++V   T ++ A+ L +  ++ +             SI +D VE+
Sbjct: 71  NCSYLAEGEMTKFRANVVCERTLAECAQNLSIGKYLLLGKGEENTGGRTRVSILSDAVEA 130

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           LI A+Y+DGG+E A TF+    ++   KS  G    D KT+LQE           Y++  
Sbjct: 131 LIGAIYIDGGLESARTFILNQLEKTIEKSIQGTIFMDYKTQLQEIIQKTNEHKIAYEIIE 190

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             GPDH   F   V++       G   +K+ AEQ+AA   L+ 
Sbjct: 191 EKGPDHSKVFVAQVKVDEKVVGVGEGRTKKEAEQMAAKSSLEN 233


>gi|327463120|gb|EGF09441.1| ribonuclease III [Streptococcus sanguinis SK1]
 gi|327474731|gb|EGF20136.1| ribonuclease III [Streptococcus sanguinis SK408]
 gi|327490288|gb|EGF22076.1| ribonuclease III [Streptococcus sanguinis SK1058]
 gi|332362454|gb|EGJ40254.1| ribonuclease III [Streptococcus sanguinis SK1056]
          Length = 232

 Score =  261 bits (669), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 76/229 (33%), Positives = 118/229 (51%), Gaps = 8/229 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + LE+     F++ +LLE A TH+S ++ ++       ERLEFLGD +L L+IS
Sbjct: 1   MENLKKALLEQ-FDLVFSDETLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS   + +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYTKYPKRPEGDLSKLRSMIVREESLAGFARDCQFDHFIKLGRGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D+ E+ + AL LD G+E   +F+ +    + +++G F R  D KT+LQE       V   
Sbjct: 120 DLFEAFLGALLLDKGVEAVKSFLYQVMIPK-VEAGDFERVTDYKTKLQELLQINGDVEIA 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           Y+V   +GP H   F V V I+G    QG   SK+ AEQ AA    ++E
Sbjct: 179 YQVVSETGPAHAKNFEVAVLINGRKSGQGQGRSKKLAEQEAAKNAFEKE 227


>gi|319649604|ref|ZP_08003760.1| rnc protein [Bacillus sp. 2_A_57_CT2]
 gi|317398766|gb|EFV79448.1| rnc protein [Bacillus sp. 2_A_57_CT2]
          Length = 246

 Score =  261 bits (669), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 107/223 (47%), Gaps = 7/223 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++   +  IG  F N  LL++A THSS  + ++    E  ERLEFLGD +L L +S  L+
Sbjct: 18  QFKEFQTEIGIQFENEKLLKQAFTHSSYVNEHRRKPYEDNERLEFLGDAVLELTVSKFLY 77

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             +    EGEL+    ++V   +    A  L   S + +             ++ ADV E
Sbjct: 78  LKYPMMSEGELTKLRAAVVCEPSLVSFAHALSFGSLVLLGKGEEMTGGRTRPALLADVFE 137

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178
           + I ALYLD G++    F++K    + + SG F    D K++LQE        T EYK+ 
Sbjct: 138 AFIGALYLDKGLDTVVGFLEKVVFPK-IDSGAFSHVMDFKSQLQELVQRDGAGTIEYKIL 196

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              GP H+  F   V ++G     G   SK+ AEQ AA   L+
Sbjct: 197 QEKGPAHNREFVSTVSLNGRELGTGTGRSKKEAEQHAAQMALE 239


>gi|331266250|ref|YP_004325880.1| ribonuclease III [Streptococcus oralis Uo5]
 gi|326682922|emb|CBZ00539.1| ribonuclease III [Streptococcus oralis Uo5]
          Length = 232

 Score =  261 bits (669), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 112/227 (49%), Gaps = 6/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + L+KR    FA+++LLE A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MKELQ-TVLKKRFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS     +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEY 175
           D  E+ + AL LD  +     F+ +    +      +  +D KT LQE       V   Y
Sbjct: 120 DAFEAFLGALLLDKDVARVKEFIYQVMIPKVEAGDFEMIKDYKTHLQELLQVNGDVDIRY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +VT  +GP HD  F V V + G +  +G   SK+ AEQ AA   +++
Sbjct: 180 QVTSETGPAHDKVFDVEVLVEGRSIGKGQGRSKKLAEQEAAKNAVEK 226


>gi|305674324|ref|YP_003865996.1| ribonuclease III [Bacillus subtilis subsp. spizizenii str. W23]
 gi|305412568|gb|ADM37687.1| ribonuclease III [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 249

 Score =  261 bits (669), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 108/225 (48%), Gaps = 5/225 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59
            ++   ++RI   F N  LL +A THSS  + ++    E  ERLEFLGD +L L IS  L
Sbjct: 18  EQFKEFQERISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISRFL 77

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F  + +  EG+L+    ++V   +   +A EL     + +             ++ ADV 
Sbjct: 78  FAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVF 137

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVT 178
           E+ I ALYLD G+E   +F+  Y   +          D K++LQE+       + EYK+T
Sbjct: 138 EAFIGALYLDQGLEPVESFLKVYVFPKINDGAFSHVMDFKSQLQEYVQRDGKGSLEYKIT 197

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              GP H+  F  +V + G     G   SK+ AEQ AA E L + 
Sbjct: 198 NEKGPAHNREFEAIVSLKGEPLGVGNGRSKKEAEQHAAQEALAKL 242


>gi|42521037|ref|NP_966952.1| ribonuclease III, putative [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|225630900|ref|YP_002727691.1| ribonuclease III, putative [Wolbachia sp. wRi]
 gi|225677311|ref|ZP_03788288.1| ribonuclease III, putative [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|81652137|sp|Q73FT3|RNC_WOLPM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807910|sp|C0R4Q8|RNC_WOLWR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|42410778|gb|AAS14886.1| ribonuclease III, putative [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|225590638|gb|EEH11888.1| ribonuclease III, putative [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225592881|gb|ACN95900.1| ribonuclease III, putative [Wolbachia sp. wRi]
          Length = 232

 Score =  261 bits (669), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 84/228 (36%), Positives = 126/228 (55%), Gaps = 5/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLIS 56
           M +L    + K I Y F N ++LE+ALTH S++    ++    YERLEFLGD +L +++S
Sbjct: 1   MKSLN-DAISKIIDYKFTNYAILEEALTHPSVNKRNSKNQIVSYERLEFLGDSVLNMVVS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  F   KEG L+ R   LV   T + VA+E+ L SFI +++  R +          
Sbjct: 60  ATLFKLFPEEKEGALAKRKTDLVCGNTIANVAKEIKLGSFIIMNNSERCNGGRCNLKNLE 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           + +E+LI A+Y+DGG+E    F+ +YW++ A       +D KT LQEW        PEY+
Sbjct: 120 NSLEALIGAIYIDGGLENVEKFIIQYWEKLAKGMLDPPQDPKTSLQEWTQKNKLPLPEYE 179

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +  ++GP H+P FT+ V I           SK+ AEQ AA  +L++ G
Sbjct: 180 LVKQTGPAHNPEFTISVCIEDYGKVSACASSKKIAEQKAAELMLEKIG 227


>gi|219870402|ref|YP_002474777.1| ribonuclease III [Haemophilus parasuis SH0165]
 gi|254807496|sp|B8F3C7|RNC_HAEPS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|219690606|gb|ACL31829.1| ribonuclease III/dsRNA-specific ribonuclease [Haemophilus parasuis
           SH0165]
          Length = 223

 Score =  261 bits (669), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 82/225 (36%), Positives = 125/225 (55%), Gaps = 6/225 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++   L+K++GY FAN   L +ALTH S +    ++ ERLEFLGD IL   I   L+  F
Sbjct: 1   MQLERLQKKLGYQFANLDYLTQALTHRSAA---SKNNERLEFLGDSILNFAIGKALYEKF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EGELS    +LV  +T + VAR+ +L  ++++ +   K       SI +D VE++I
Sbjct: 58  PKANEGELSRMRAALVKEQTLAVVARQFELGEYMKLGAGELKSGGYRRESILSDCVEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+YLD GI+ A   V  +++Q    ++ G+ ++D KT LQE+   +    P Y+V    
Sbjct: 118 AAVYLDAGIDRAMERVHCWYQQLLNDMQLGEAQKDPKTRLQEYLQGRKLPLPTYEVIDIK 177

Query: 182 GPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225
           G  H+  F V  ++  +     G   S+R AEQ AA +V+K  GI
Sbjct: 178 GEAHNQTFKVSCKVEKVDEIFIGNGTSRRKAEQDAALQVIKVLGI 222


>gi|301168615|emb|CBW28205.1| RNase III [Haemophilus influenzae 10810]
          Length = 227

 Score =  261 bits (669), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 83/231 (35%), Positives = 122/231 (52%), Gaps = 11/231 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ L    LE++IGY F + +LL++ALTH S +    +  ERLEFLGD IL   I+  L+
Sbjct: 1   MNHLD--RLERKIGYCFNDITLLKQALTHRSAA---TQHNERLEFLGDSILNFTIAEALY 55

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EGELS    +LV   T + +AR+ +L  ++ + S   K+      SI AD VE
Sbjct: 56  HQFPRCNEGELSRMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVE 115

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+ LD G+ V    +  +++Q    +K G  ++DAKT LQE+   K    P Y+V 
Sbjct: 116 AIIGAMSLDQGLAVTTQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPLPTYEVV 175

Query: 179 FRSGPDHDPRFTVVVEIS--GL--APAQGMDCSKRAAEQVAAAEVLKREGI 225
              G  H   FTV  ++   G           S+R AEQ AA ++LK   I
Sbjct: 176 NIQGEAHCQIFTVECKVKSAGKIDRTFVAKGSSRRKAEQAAAEQILKELDI 226


>gi|319407031|emb|CBI80668.1| ribonuclease III [Bartonella sp. 1-1C]
          Length = 227

 Score =  261 bits (669), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 112/226 (49%), Positives = 146/226 (64%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M       LEK  G++F +   L++ALTHSS+  S Q +YERLEFLGDR+LGLLI+ +L+
Sbjct: 1   MEHQIIDQLEKLTGHSFKDADRLKRALTHSSVQSSEQGNYERLEFLGDRVLGLLIAEMLY 60

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELSVR N LV+A+TC+ +A E+ L   + V  +++      + +I ADV+E
Sbjct: 61  QIFPQASEGELSVRLNGLVNAQTCADIALEMGLPDMVHVGCEMKNLEGRRLVNIYADVIE 120

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +LIA +YLDGG+E     + +YW  RA K    RRD+KTELQEWAH +    P Y+V  R
Sbjct: 121 ALIAVIYLDGGLESVRPVIQRYWHDRAKKMNAGRRDSKTELQEWAHTQDSAQPHYQVVQR 180

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
            GPDHDP F V V I G AP  G   SKR AE+ AA  +L+REGIW
Sbjct: 181 YGPDHDPVFMVEVSICGYAPEIGRGSSKRQAERDAAERILRREGIW 226


>gi|332981630|ref|YP_004463071.1| ribonuclease III [Mahella australiensis 50-1 BON]
 gi|332699308|gb|AEE96249.1| ribonuclease III [Mahella australiensis 50-1 BON]
          Length = 228

 Score =  261 bits (669), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 113/224 (50%), Gaps = 4/224 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLISTLLFN 61
            R   L   +GY F + + L++ALTHSS ++ +   Y  ERLE LGD +L ++I+  LF 
Sbjct: 2   ERLKELMDLLGYRFNDINKLDEALTHSSYAYEHGLDYYNERLELLGDSVLNIIITDYLFV 61

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +    EG LS   +++VS +   +VA  ++L S++ +S   +        S  AD VE+
Sbjct: 62  TYPELSEGNLSKLRSNIVSEKPLYKVAAAMNLGSYLLLSRGEKLSHGDMRPSTLADTVEA 121

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTF 179
           +I A+YLDGG + A  FV         ++       D K+ELQE          +Y++  
Sbjct: 122 IIGAVYLDGGFDAAKVFVLSLLAPIIEETAAISNFNDYKSELQERLQIDGYSDIKYEIIR 181

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             GPDHD  F   V++ G    +G   SK+ AEQ AA + L   
Sbjct: 182 EEGPDHDKMFFAEVKVDGKPVGRGSGRSKKDAEQKAAQQALSEL 225


>gi|52785573|ref|YP_091402.1| ribonuclease III [Bacillus licheniformis ATCC 14580]
 gi|163119429|ref|YP_078987.2| ribonuclease III [Bacillus licheniformis ATCC 14580]
 gi|319646025|ref|ZP_08000255.1| ribonuclease 3 [Bacillus sp. BT1B_CT2]
 gi|81385589|sp|Q65JQ5|RNC_BACLD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|52348075|gb|AAU40709.1| Rnc [Bacillus licheniformis ATCC 14580]
 gi|145902936|gb|AAU23349.2| ribonuclease III [Bacillus licheniformis ATCC 14580]
 gi|317391775|gb|EFV72572.1| ribonuclease 3 [Bacillus sp. BT1B_CT2]
          Length = 249

 Score =  261 bits (669), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 106/227 (46%), Gaps = 5/227 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIST 57
            A ++   ++RI   F N  LL +A THSS  + ++    E  ERLEFLGD +L L IS 
Sbjct: 16  KAEQFKKFQERISVQFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQ 75

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            L+  + +  EG+L+    ++V   +   +A EL     + +             ++ AD
Sbjct: 76  FLYAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGELVLLGKGEEMTGGRKRPALLAD 135

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYK 176
           V E+ I ALYLD G+E   TF+  Y   +          D K++LQE+         EYK
Sbjct: 136 VFEAFIGALYLDQGLEAVVTFLKAYVFPKIDDGAFSHVMDFKSQLQEFVQRDGRGILEYK 195

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +    GP H+  F   V + G     G   SK+ AEQ AA E L + 
Sbjct: 196 ILQEKGPAHNREFEANVSLKGEVLGVGSGRSKKEAEQHAAQEALAKL 242


>gi|319404018|emb|CBI77606.1| ribonuclease III [Bartonella rochalimae ATCC BAA-1498]
          Length = 227

 Score =  261 bits (669), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 113/226 (50%), Positives = 146/226 (64%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M       LEK  G++F +   L++ALTHSS+  S Q +YERLEFLGDR+LGLLI+ +L+
Sbjct: 1   MEHQIIDQLEKLTGHSFKDADRLKRALTHSSVQSSEQGNYERLEFLGDRVLGLLIAEMLY 60

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELSVR N LV+A+TC+ +A E+ L   + V  +++      + +I ADV+E
Sbjct: 61  QIFPQASEGELSVRLNGLVNAQTCADIALEMGLPDMVHVGCEMKNLEGRRLVNIYADVIE 120

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +LIA +YLDGG+E     + +YW  RA K    RRDAKTELQEWAH +    P Y+V  R
Sbjct: 121 ALIAVIYLDGGLESVRPVIQRYWHDRAQKMNAGRRDAKTELQEWAHTQDSAQPYYQVVQR 180

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
            GPDHDP F V V I G AP  G   SKR AE+ AA  +L+REGIW
Sbjct: 181 YGPDHDPVFMVEVSICGYAPEIGRGSSKRQAERDAAERILRREGIW 226


>gi|165975962|ref|YP_001651555.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|238687533|sp|B0BUA6|RNC_ACTPJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|165876063|gb|ABY69111.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
          Length = 223

 Score =  261 bits (669), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 79/223 (35%), Positives = 118/223 (52%), Gaps = 6/223 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++   L+K++GY F N   L +ALTH S      ++ ERLEFLGD IL   I   LF  F
Sbjct: 1   MQLERLQKKLGYQFTNLDYLLQALTHRSAG---AKNNERLEFLGDSILNFAIGKALFEKF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EGELS    +LV  +T + +AR+  L  ++++ +   K       SI +D VE++I
Sbjct: 58  PKANEGELSRMRATLVREQTLAILARKFGLGEYMKLGAGELKSGGYRRESILSDCVEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+YLD G++ A   V  +++     +K G  ++D KT LQE+   +    P Y+V    
Sbjct: 118 AAIYLDAGMDKAIAQVHLWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVLNIK 177

Query: 182 GPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           G  H+  F V  +I        G+  S+R AEQ AA +VL + 
Sbjct: 178 GEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAKL 220


>gi|68248565|ref|YP_247677.1| ribonuclease III [Haemophilus influenzae 86-028NP]
 gi|145629132|ref|ZP_01784931.1| ribonuclease III [Haemophilus influenzae 22.1-21]
 gi|145633429|ref|ZP_01789159.1| ribonuclease III [Haemophilus influenzae 3655]
 gi|145636782|ref|ZP_01792448.1| ribonuclease III [Haemophilus influenzae PittHH]
 gi|145639697|ref|ZP_01795300.1| ribonuclease III [Haemophilus influenzae PittII]
 gi|148825705|ref|YP_001290458.1| ribonuclease III [Haemophilus influenzae PittEE]
 gi|229846933|ref|ZP_04467039.1| ribonuclease III [Haemophilus influenzae 7P49H1]
 gi|260582072|ref|ZP_05849867.1| ribonuclease III [Haemophilus influenzae NT127]
 gi|81337008|sp|Q4QPN0|RNC_HAEI8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043319|sp|A5UBC4|RNC_HAEIE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|68056764|gb|AAX87017.1| ribonuclease III [Haemophilus influenzae 86-028NP]
 gi|144978635|gb|EDJ88358.1| ribonuclease III [Haemophilus influenzae 22.1-21]
 gi|144985992|gb|EDJ92594.1| ribonuclease III [Haemophilus influenzae 3655]
 gi|145270080|gb|EDK10017.1| ribonuclease III [Haemophilus influenzae PittHH]
 gi|145271254|gb|EDK11168.1| ribonuclease III [Haemophilus influenzae PittII]
 gi|148715865|gb|ABQ98075.1| ribonuclease III [Haemophilus influenzae PittEE]
 gi|229810017|gb|EEP45737.1| ribonuclease III [Haemophilus influenzae 7P49H1]
 gi|260094962|gb|EEW78855.1| ribonuclease III [Haemophilus influenzae NT127]
 gi|309750667|gb|ADO80651.1| RNase III, dsRNA [Haemophilus influenzae R2866]
          Length = 227

 Score =  261 bits (668), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 81/226 (35%), Positives = 119/226 (52%), Gaps = 9/226 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              LE++IGY F + +LL++ALTH S +    +  ERLEFLGD IL   I+  L++ F  
Sbjct: 4   LDRLERKIGYCFNDIALLKQALTHRSAA---TQHNERLEFLGDSILNFTIAEALYHQFPR 60

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    +LV   T + +AR+ +L  ++ + S   K+      SI AD VE++I A
Sbjct: 61  CNEGELSRMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVEAIIGA 120

Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           + LD G+ V    +  +++Q    +K G  ++DAKT LQE+   K    P Y+V    G 
Sbjct: 121 MSLDQGLAVTTQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPLPTYEVVNIQGE 180

Query: 184 DHDPRFTVVVEIS--GL--APAQGMDCSKRAAEQVAAAEVLKREGI 225
            H   FTV  ++   G           S+R AEQ AA ++LK   I
Sbjct: 181 AHCQIFTVECKVKSAGKIDRTFVAKGSSRRKAEQAAAEQILKELDI 226


>gi|89098685|ref|ZP_01171567.1| Rnc [Bacillus sp. NRRL B-14911]
 gi|89086647|gb|EAR65766.1| Rnc [Bacillus sp. NRRL B-14911]
          Length = 259

 Score =  261 bits (668), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 72/226 (31%), Positives = 111/226 (49%), Gaps = 7/226 (3%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIST 57
           + +++   +K+IG +F N  LL++A THSS  + ++    E  ERLEFLGD +L L +S 
Sbjct: 16  AEMQFREFQKKIGISFENEKLLKQAFTHSSYVNEHRRKPYEDNERLEFLGDAVLELTVSQ 75

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            L+  +    EGEL+    ++V   +    A EL+    + +             ++ AD
Sbjct: 76  FLYKKYPMMSEGELTKLRAAVVCEPSLVTFANELEFGKLVLLGKGEEMTGGRERPALLAD 135

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEY 175
           V E+ I ALYL+ GI+    F+++    + + SG F    D K++LQE          EY
Sbjct: 136 VFEAFIGALYLEKGIDTVIGFLEQTVFPK-INSGAFSHVMDFKSQLQELVQRDGAGAIEY 194

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           K+    GP H   F   V +SG     G   SK+ AEQ AA   L+
Sbjct: 195 KILQEKGPAHSREFVSRVSLSGNELGTGTGRSKKEAEQHAAQMALE 240


>gi|148827174|ref|YP_001291927.1| ribonuclease III [Haemophilus influenzae PittGG]
 gi|189043320|sp|A5UFI8|RNC_HAEIG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|148718416|gb|ABQ99543.1| ribonuclease III [Haemophilus influenzae PittGG]
          Length = 227

 Score =  261 bits (668), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 81/226 (35%), Positives = 119/226 (52%), Gaps = 9/226 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              LE++IGY F + +LL++ALTH S +    +  ERLEFLGD IL   I+  L++ F  
Sbjct: 4   LDRLERKIGYRFNDIALLKQALTHRSAA---TQHNERLEFLGDSILNFTIAEALYHQFPR 60

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    +LV   T + +AR+ +L  ++ + S   K+      SI AD VE++I A
Sbjct: 61  CNEGELSRMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVEAIIGA 120

Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           + LD G+ V    +  +++Q    +K G  ++DAKT LQE+   K    P Y+V    G 
Sbjct: 121 MSLDQGLAVTTQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPLPTYEVVNIQGE 180

Query: 184 DHDPRFTVVVEIS--GL--APAQGMDCSKRAAEQVAAAEVLKREGI 225
            H   FTV  ++   G           S+R AEQ AA ++LK   I
Sbjct: 181 AHCQIFTVECKVKSAGKIDRTFVAKGSSRRKAEQAAAEQILKELDI 226


>gi|332141899|ref|YP_004427637.1| ribonuclease III [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551921|gb|AEA98639.1| ribonuclease III [Alteromonas macleodii str. 'Deep ecotype']
          Length = 228

 Score =  261 bits (668), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 80/222 (36%), Positives = 120/222 (54%), Gaps = 6/222 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +Y  L K IGY F N +LLE+ALTH S +  +    ERLEFLGD ILG++I   LF  F 
Sbjct: 6   KYLRLYKAIGYTFNNEALLEQALTHRSAAKQH---NERLEFLGDAILGMIIGETLFKRFP 62

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EG+L+   ++LV  +T +++A+E  +   + +     K      +SI AD VE+++ 
Sbjct: 63  TVPEGKLTRMRSTLVKGDTLAELAKEASVGELLNLGPGELKSGGHRRSSILADAVEAILG 122

Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YLD G++     +D+ W+ R   L      +D+KT LQE+   +    P Y+V   SG
Sbjct: 123 AIYLDSGMDEVRGVIDRLWESRINQLDPNAHPKDSKTRLQEFLQGRKQALPTYEVLSISG 182

Query: 183 PDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKRE 223
            DH   F V  ++  L  A      S+R AEQ AA   L++ 
Sbjct: 183 KDHAQTFEVCCKVESLPDAVVAPGNSRRKAEQEAARLTLEKL 224


>gi|319408283|emb|CBI81936.1| ribonuclease III [Bartonella schoenbuchensis R1]
          Length = 236

 Score =  261 bits (668), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 111/226 (49%), Positives = 152/226 (67%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M       LEK  G+ F N + L++ALTHSS+    + +YERLEFLGDR+LGLL++ +L+
Sbjct: 2   MKRHIIDQLEKLTGHRFKNENRLKRALTHSSVQGLAEGNYERLEFLGDRVLGLLVAEMLY 61

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELSVR N LV+ +TC+++A E+ L   I V  +++      + ++ ADV+E
Sbjct: 62  QFFPHASEGELSVRLNGLVNTQTCAEIALEMGLPDMIHVGFEMKNLENRRVANMYADVIE 121

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +LIA +YLDG +E   +F+ KYW+ RA K    RRDAKTELQEWAH + G  P+Y+V  R
Sbjct: 122 ALIAVMYLDGDLECVRSFIRKYWQDRARKMDAGRRDAKTELQEWAHTQDGAQPQYRVVKR 181

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
            GPDHDP F V V++ G AP  G   SKR AE+VAA ++L+REG+W
Sbjct: 182 YGPDHDPIFMVEVKVFGFAPEIGQGSSKRHAERVAAEKILRREGVW 227


>gi|182417248|ref|ZP_02948601.1| ribonuclease III [Clostridium butyricum 5521]
 gi|237669155|ref|ZP_04529139.1| ribonuclease III [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182378894|gb|EDT76407.1| ribonuclease III [Clostridium butyricum 5521]
 gi|237657503|gb|EEP55059.1| ribonuclease III [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 232

 Score =  261 bits (668), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 81/227 (35%), Positives = 124/227 (54%), Gaps = 4/227 (1%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58
           M+      +E+ +G  F N +LL+ ALTHSS ++ ++  E  ERLEFLGD +L L I+  
Sbjct: 1   MNKYTLKEIEENLGVCFNNPTLLKTALTHSSFANQFKDAEYNERLEFLGDAVLQLCITEY 60

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LFN+F S  EGEL+   + +V   +  ++A++L L  +IR+S            SIQAD 
Sbjct: 61  LFNNFKSKSEGELTKTRSLIVCENSLYEIAKKLHLGEYIRMSKGEELTGGRERISIQADA 120

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYK 176
           VE++IAA+YLD GI     F+  ++++   K+   +   D KT+LQE+      V+  Y+
Sbjct: 121 VEAVIAAVYLDKGIGFVRDFILLHFEEIIKKAINNEIILDFKTKLQEFLQKDGEVSIHYE 180

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +    GP H  +F   V I      +G   SK+ AEQ AA + L + 
Sbjct: 181 LIKHEGPPHRRKFFTNVVIENNIMGEGCGYSKKEAEQNAAKQALMKL 227


>gi|127511987|ref|YP_001093184.1| ribonuclease III [Shewanella loihica PV-4]
 gi|189043350|sp|A3QBS7|RNC_SHELP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|126637282|gb|ABO22925.1| RNAse III [Shewanella loihica PV-4]
          Length = 225

 Score =  261 bits (668), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 85/225 (37%), Positives = 123/225 (54%), Gaps = 6/225 (2%)

Query: 1   MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  ++    L + +GY F   +LLE+ALTH S +  +    ERLEFLGD IL ++IS  L
Sbjct: 1   MEPIKNLPRLGRILGYQFQQIALLEQALTHRSAASKH---NERLEFLGDSILSIVISDAL 57

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           ++ F  A EG+LS    +LV  +  +++A+E  L  ++++     K       SI AD +
Sbjct: 58  YHQFPKATEGDLSRMRATLVCGKMLAEIAKEFKLGDYLKLGPGELKSGGFRRESILADAM 117

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           E++I A+YLD  IE   T V  ++K R A+     ++D KT LQE         P Y V 
Sbjct: 118 EAIIGAIYLDADIETCRTLVLNWYKSRLAVIEPVNQKDPKTLLQEHLQGFKQPLPVYTVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKR 222
             SG  H   FTV  ++  L  A  G+  S+R AEQ+AAAEVL+R
Sbjct: 178 NISGEAHAQTFTVECKVEQLKEAVIGVANSRRKAEQIAAAEVLER 222


>gi|325696125|gb|EGD38016.1| ribonuclease III [Streptococcus sanguinis SK160]
          Length = 232

 Score =  261 bits (668), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 77/229 (33%), Positives = 118/229 (51%), Gaps = 8/229 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + LE+     FA+ +LLE A TH+S ++ ++       ERLEFLGD +L L+IS
Sbjct: 1   MENLKKALLEQ-FDLVFADETLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS   + +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYTKYPKRPEGDLSKLRSMIVREESLAGFARDCQFDHFIKLGRGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D+ E+ + AL LD G+E   +F+ +    + +++G F R  D KT+LQE       V   
Sbjct: 120 DLFEAFLGALLLDKGVEAVKSFLYQVMIPK-VEAGDFERVTDYKTKLQELLQINGDVEIA 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           Y+V   +GP H   F V V I+G    QG   SK+ AEQ AA    ++E
Sbjct: 179 YQVVSETGPAHAKNFEVAVLINGRKSGQGQGRSKKLAEQEAAKNAFEKE 227


>gi|332992353|gb|AEF02408.1| ribonuclease III [Alteromonas sp. SN2]
          Length = 229

 Score =  261 bits (668), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 81/220 (36%), Positives = 117/220 (53%), Gaps = 6/220 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +Y  L K +GY F N +LLE+ALTH S +  +    ERLEFLGD ILG++I   LF  F 
Sbjct: 6   KYIRLSKALGYTFNNVALLEQALTHRSAAKQH---NERLEFLGDAILGMVIGETLFKRFP 62

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+L+   ++LV  +T +++ARE  +   + +     K      +SI AD VE+++ 
Sbjct: 63  DVPEGKLTRMRSTLVKGDTLAELAREASMGELLHLGPGELKSGGHRRSSILADAVEAVLG 122

Query: 125 ALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YLD G+E     +   W+ R  AL      +D+KT LQE+   +    P Y+V   SG
Sbjct: 123 AIYLDSGMEEVCNVIYHLWESRIEALNPNAHPKDSKTRLQEYLQGRKLPLPSYEVISISG 182

Query: 183 PDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLK 221
            DH   F V   ++ L  P      S+R AEQ AA   L+
Sbjct: 183 KDHAQVFEVSCTVTTLDKPVSASGNSRRKAEQEAARLTLE 222


>gi|315303706|ref|ZP_07874220.1| ribonuclease III [Listeria ivanovii FSL F6-596]
 gi|313627919|gb|EFR96538.1| ribonuclease III [Listeria ivanovii FSL F6-596]
          Length = 229

 Score =  261 bits (667), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 67/224 (29%), Positives = 111/224 (49%), Gaps = 5/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++  L++ +G+ F +  LL++A THSS  + ++    +  ERLEFLGD +L L +S  LF
Sbjct: 3   QWEELQESVGFYFEDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N +    EG ++    ++V   +  + A  +  + ++R+     K       ++ ADV E
Sbjct: 63  NKYPDMAEGHMTKMRAAIVCEPSLVEFAEVVHFSKYVRLGKGEEKAGGRTRPALLADVFE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTF 179
           S I ALYLD GI    TF+++    +          D KT+LQE       V  EY +  
Sbjct: 123 SFIGALYLDNGIAKVVTFLERIIFPKIDAGAYLETVDYKTQLQEIVQRDRDVLIEYDILG 182

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +GP H+  F   V ++G    +G   +K+ AEQ AA   + + 
Sbjct: 183 ETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226


>gi|311029996|ref|ZP_07708086.1| ribonuclease III [Bacillus sp. m3-13]
          Length = 247

 Score =  261 bits (667), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 108/227 (47%), Gaps = 5/227 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIST 57
           +   +  L++++G  F N  LL +A THSS  + ++    E  ERLEFLGD +L L IS 
Sbjct: 16  TKKNFVMLQEKLGVKFHNEKLLYQAFTHSSYVNEHRRKPYEDNERLEFLGDAVLELTISQ 75

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            L+  +    EG+L+    S+V   +    A +L    ++ +             ++ AD
Sbjct: 76  FLYKKYPMMSEGQLTKLRASIVCEPSLVSFANDLSFGQYVLLGKGEEITGGRARPALLAD 135

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYK 176
           V E+ I ALYLD G+E    F++KY   +  +       D K++LQE          EY+
Sbjct: 136 VFEAFIGALYLDLGLETVFQFLEKYVYPKINEGAFSHVMDFKSQLQEMIQRNALGVIEYE 195

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V    GP H+  F   V ++      G+  SK+ AEQ AA   L++ 
Sbjct: 196 VLEEKGPAHNREFVSKVSLNKEEMGIGVGRSKKEAEQHAAQFALQKL 242


>gi|126173439|ref|YP_001049588.1| ribonuclease III [Shewanella baltica OS155]
 gi|160874397|ref|YP_001553713.1| ribonuclease III [Shewanella baltica OS195]
 gi|217974269|ref|YP_002359020.1| ribonuclease III [Shewanella baltica OS223]
 gi|304409362|ref|ZP_07390982.1| ribonuclease III [Shewanella baltica OS183]
 gi|307303720|ref|ZP_07583473.1| ribonuclease III [Shewanella baltica BA175]
 gi|189043346|sp|A3D1V6|RNC_SHEB5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043348|sp|A9L5N6|RNC_SHEB9 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807898|sp|B8EBQ2|RNC_SHEB2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|125996644|gb|ABN60719.1| RNAse III [Shewanella baltica OS155]
 gi|160859919|gb|ABX48453.1| Ribonuclease III [Shewanella baltica OS195]
 gi|217499404|gb|ACK47597.1| Ribonuclease III [Shewanella baltica OS223]
 gi|304351880|gb|EFM16278.1| ribonuclease III [Shewanella baltica OS183]
 gi|306912618|gb|EFN43041.1| ribonuclease III [Shewanella baltica BA175]
 gi|315266632|gb|ADT93485.1| ribonuclease III [Shewanella baltica OS678]
          Length = 226

 Score =  261 bits (667), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 83/225 (36%), Positives = 125/225 (55%), Gaps = 7/225 (3%)

Query: 1   MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  ++    L + + Y F N  LL +ALTH S ++ +    ERLEFLGD IL ++IS  L
Sbjct: 1   MEPIKNLPRLCRTLSYEFKNIELLTQALTHRSAANKH---NERLEFLGDSILSIVISDAL 57

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           ++ F  A EG+LS    +LV  +T + +A+E  L  ++ +     K       SI AD V
Sbjct: 58  YHQFPKATEGDLSRMRATLVRGDTLTIIAQEFKLGDYLYLGPGELKSGGFRRESILADAV 117

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD  +EV    + K++ +R   ++ G  ++DAKT LQE         P+Y+V
Sbjct: 118 EAIIGAVYLDSDLEVCRALLLKWYAERLAEIQPGISQKDAKTLLQEHLQGFKKPLPDYQV 177

Query: 178 TFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLK 221
               G  HD  FTV   I  L+ +  G+  S+R AEQ+AAA+VL+
Sbjct: 178 INIEGDAHDQTFTVECRIEDLSQSVIGVASSRRKAEQIAAAQVLE 222


>gi|322375351|ref|ZP_08049864.1| ribonuclease III [Streptococcus sp. C300]
 gi|321279614|gb|EFX56654.1| ribonuclease III [Streptococcus sp. C300]
          Length = 232

 Score =  261 bits (667), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 111/227 (48%), Gaps = 6/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + L+KR    FA++ LLE A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MKELQ-TVLKKRFAIEFADKKLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS     +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYKKYPRKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEY 175
           D  E+ + AL LD  +     F+ +    +      +  +D KT LQE       V   Y
Sbjct: 120 DAFEAFLGALLLDKDVARVKEFIYQVMIPKVEAGDFEMIKDYKTHLQELLQVNGDVDIRY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +VT  +GP HD  F V V + G +  +G   SK+ AEQ AA   +++
Sbjct: 180 QVTSETGPAHDKVFDVEVLVEGKSIGKGQGRSKKLAEQEAAKNAVEK 226


>gi|322385039|ref|ZP_08058689.1| ribonuclease III [Streptococcus cristatus ATCC 51100]
 gi|321270949|gb|EFX53859.1| ribonuclease III [Streptococcus cristatus ATCC 51100]
          Length = 229

 Score =  261 bits (667), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 77/229 (33%), Positives = 118/229 (51%), Gaps = 8/229 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + LE+  G  F + SLLE A TH+S ++ ++       ERLEFLGD +L L+IS
Sbjct: 1   MEQLKDALLEQ-FGLVFEDSSLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS   + +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYKKYPKKPEGDLSKLRSMIVREESLAGFARDCQFDQFIKLGRGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D+ E+ + AL LD  +E    F+ +    + +++G F +  D KT+LQE       V   
Sbjct: 120 DLFEAFLGALLLDKDVETVKAFIYQVMIPK-VEAGDFEQVTDYKTKLQELLQVNGDVEIV 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           Y+VT  +GP H   F V V I+G    QG   SK+ AEQ AA +  ++E
Sbjct: 179 YQVTDETGPAHAKNFAVAVLINGQKAGQGQGRSKKLAEQEAAKDAFEKE 227


>gi|294500965|ref|YP_003564665.1| ribonuclease III [Bacillus megaterium QM B1551]
 gi|294350902|gb|ADE71231.1| ribonuclease III [Bacillus megaterium QM B1551]
          Length = 248

 Score =  261 bits (667), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 106/225 (47%), Gaps = 5/225 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58
              ++  +K IG  F N +LL +A THSS  + ++    E  ERLEFLGD +L L +S  
Sbjct: 17  KQNFAEFQKEIGIQFTNEALLFQAFTHSSYVNEHRRRPYEDNERLEFLGDAVLELTVSQF 76

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF  + +  EGEL+    ++V   +    A E+D    + +             ++ ADV
Sbjct: 77  LFKKYPTMSEGELTKLRAAVVCEPSLVTFANEMDFGKLVLLGKGEEMTGGRSRPALLADV 136

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKV 177
            E+ I ALYLD G++   T + K    +  +       D K++LQE          EYKV
Sbjct: 137 FEAFIGALYLDQGLDTVVTILKKVVFPKINEGAFSHVMDFKSQLQEVIQRDGVGQLEYKV 196

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
               GP H+  F   V ++G     G+  SK+ AEQ AA   + +
Sbjct: 197 LQEKGPAHNREFLSRVSLNGEELGVGVGRSKKEAEQKAAQVAITK 241


>gi|90424139|ref|YP_532509.1| ribonuclease III [Rhodopseudomonas palustris BisB18]
 gi|90106153|gb|ABD88190.1| RNAse III [Rhodopseudomonas palustris BisB18]
          Length = 272

 Score =  261 bits (667), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 102/217 (47%), Positives = 140/217 (64%), Gaps = 3/217 (1%)

Query: 12  RIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           RIG+AFA+ +LL  A TH S    + +  +SY+RLEFLGD +LGL++S +L+  F +A E
Sbjct: 49  RIGHAFADPALLATAFTHVSALKSARNRADSYQRLEFLGDHVLGLVVSDMLYRAFPNADE 108

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELS R   LV  E C+ VAR LDL   I++ +           S+  D+ E++I A++L
Sbjct: 109 GELSKRLADLVRKEACADVARSLDLLDGIKLGTVGAGAGARLRKSVLGDICEAVIGAIFL 168

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           DGG   A +FV + W +R  K  +  RDAKT LQEWA  K   TP Y+   R+GP HDP+
Sbjct: 169 DGGYPAAESFVQRNWLERMRKPVRPLRDAKTILQEWAQGKGLPTPVYREVERTGPHHDPQ 228

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           F V V++ GLAPA+G+  SKRAAE+VAA+ +L REG+
Sbjct: 229 FRVAVDLPGLAPAEGIGGSKRAAEKVAASVMLAREGV 265


>gi|323489554|ref|ZP_08094781.1| ribonuclease 3 [Planococcus donghaensis MPA1U2]
 gi|323396685|gb|EGA89504.1| ribonuclease 3 [Planococcus donghaensis MPA1U2]
          Length = 251

 Score =  261 bits (667), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 66/223 (29%), Positives = 103/223 (46%), Gaps = 5/223 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           +  L+K +   F   +LL +A THSS  + ++       ERLEFLGD +L L +S  L+ 
Sbjct: 23  FEQLQKELNITFKKPTLLYQAFTHSSYVNEHRRKQFTDNERLEFLGDAVLELSVSHYLYM 82

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +    EGEL+    ++V   +    A EL    +I +             ++ ADV ES
Sbjct: 83  KYPEMSEGELTKLRAAIVCEPSLVLFANELGFGKYILLGKGEELTGGRTRPALLADVFES 142

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            I ALYLD G+E   +F++     +  + +     D K++LQE    K   T  Y++   
Sbjct: 143 YIGALYLDQGLEPVVSFLEMVLFPKVDIGAFSHVMDYKSQLQELVQQKNTGTLSYEIIDE 202

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            GP H   F   V ++      G   SK+ AEQ AA   +++ 
Sbjct: 203 IGPAHSRVFVTRVSLADRELGVGNGRSKKEAEQQAAQLAIRKL 245


>gi|291288904|ref|YP_003505720.1| ribonuclease III [Denitrovibrio acetiphilus DSM 12809]
 gi|290886064|gb|ADD69764.1| ribonuclease III [Denitrovibrio acetiphilus DSM 12809]
          Length = 235

 Score =  261 bits (667), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 81/227 (35%), Positives = 130/227 (57%), Gaps = 4/227 (1%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLL 59
           S++   +LE R+GY F+++S++ +ALTH S +H    +++YERLEFLGD +L L+++  L
Sbjct: 6   SSVDIDSLEGRLGYHFSDKSIVLEALTHRSYAHEKKNKQNYERLEFLGDAVLQLIVTEYL 65

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
            + +    EG LS      VS    S++A EL L   I +    +     +  S+  D+ 
Sbjct: 66  LDRYKDYDEGLLSKLRGYFVSEGFLSRIAIELKLGEHILLGKGEKASGGKYKESLLCDIF 125

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           ES++AA+YLDGG   A   + +++  R  +  S     DAK+ELQ+ +  KFG  P+Y V
Sbjct: 126 ESVVAAIYLDGGYGFARDIIIRHFGSRIDEDISNSSFVDAKSELQKISQRKFGTLPDYTV 185

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               GP+HD  F V V++  L   QG+  +K++AE+ AA   L++ G
Sbjct: 186 LDEKGPEHDKIFVVRVDVETLVSEQGIGKTKKSAEKDAAKNALRKLG 232


>gi|323484230|ref|ZP_08089599.1| hypothetical protein HMPREF9474_01350 [Clostridium symbiosum
           WAL-14163]
 gi|323692112|ref|ZP_08106358.1| ribonuclease III [Clostridium symbiosum WAL-14673]
 gi|323402472|gb|EGA94801.1| hypothetical protein HMPREF9474_01350 [Clostridium symbiosum
           WAL-14163]
 gi|323503835|gb|EGB19651.1| ribonuclease III [Clostridium symbiosum WAL-14673]
          Length = 228

 Score =  260 bits (666), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 75/218 (34%), Positives = 113/218 (51%), Gaps = 5/218 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           +   LE++ GY F NR LL +A+THSS ++       E  ERLEFLGD +L ++ S  LF
Sbjct: 4   KLMELEEKTGYHFNNRELLGRAMTHSSYANECHKSKLECNERLEFLGDAVLEIVSSDFLF 63

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG+L+    S+V   T +  A EL L  ++ +             S+ +D +E
Sbjct: 64  HKFPDMPEGDLTKTRASMVCEPTLAYCAEELSLGKYLLLGKGEEATGGRNRNSVVSDAME 123

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +LI A+YLDGG   A  F+ K+     ++  K   D+KT LQE   ++      Y++   
Sbjct: 124 ALIGAIYLDGGFASAKEFIHKFIL-NDMEHKKLFYDSKTILQEIVQSRCEEGLSYQLLRE 182

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
            GPDH+  F V  +I      +G   +K+AAEQ+AA  
Sbjct: 183 EGPDHNKMFEVAAKIGEKEIGRGTGRTKKAAEQLAAYR 220


>gi|169342696|ref|ZP_02863737.1| ribonuclease III [Clostridium perfringens C str. JGS1495]
 gi|169299202|gb|EDS81272.1| ribonuclease III [Clostridium perfringens C str. JGS1495]
          Length = 237

 Score =  260 bits (666), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 83/228 (36%), Positives = 122/228 (53%), Gaps = 4/228 (1%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58
           M  +    +EK IG  F N+ +L  ALTHSS ++ ++  +  ERLEFLGD +L L ++  
Sbjct: 1   MKDINLIEVEKLIGIEFENKGVLITALTHSSYANQFKDVKYNERLEFLGDSVLQLCVTKY 60

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LFN++    EGEL+     +V   +  +V++ L L  +IR+S           TSIQAD 
Sbjct: 61  LFNNYKDKSEGELTKIRALVVCENSLHKVSKNLSLGKYIRMSKGEELTGGRERTSIQADA 120

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYK 176
           +E++IAA+YLD GIEVA  F+ + +K    K+   +   D KT LQE       V   Y 
Sbjct: 121 LEAVIAAVYLDKGIEVANDFILRNFKDVIDKAINEEIILDFKTRLQEVLQKNGEVNIVYN 180

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +    GP H  +F   + I+     QG+  SK+ +EQ AA   L+R G
Sbjct: 181 LVKHEGPPHRRKFFTDLLINNEVMGQGVGFSKKESEQNAAKAALQRLG 228


>gi|291165574|gb|EFE27623.1| ribonuclease III [Filifactor alocis ATCC 35896]
          Length = 229

 Score =  260 bits (666), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 83/223 (37%), Positives = 118/223 (52%), Gaps = 6/223 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY----ERLEFLGDRILGLLISTLLF 60
                +K+IGY F +  LL +ALTH+S  +  +       ERLEFLGD ILG+++ST LF
Sbjct: 3   ELKEFQKKIGYTFQDEKLLREALTHTSYINENRNKNLRPNERLEFLGDSILGVVVSTYLF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                  EGELS    S+V  ++   VA+ LD  S+I +             SI AD+VE
Sbjct: 63  EKRKDLPEGELSKIRASIVCEDSLQLVAKRLDAGSYIYMGKGEEMTGGRTRHSILADMVE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LIAA+YLDGG++ A  F+  + +    ++  G   +D KT LQE    K   + EY+V 
Sbjct: 123 ALIAAIYLDGGMKAASKFIFLFMEDVMKRATKGDMDKDYKTRLQEIVQQKPDRSIEYRVI 182

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              GPDH   F V + +     A G   SK+ AE+ AA + L+
Sbjct: 183 GEKGPDHRKIFVVELLVDKKQVAVGEGYSKKEAEKQAAKKALQ 225


>gi|291522183|emb|CBK80476.1| RNAse III [Coprococcus catus GD/7]
          Length = 233

 Score =  260 bits (666), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 70/219 (31%), Positives = 116/219 (52%), Gaps = 5/219 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
              L+++I Y F + +LL  ALTHSS ++ ++       ERLEFLGD +L ++ S  LF 
Sbjct: 7   LKELQQKIDYQFKDENLLFTALTHSSYANEHKLHKIHHNERLEFLGDAVLEVVSSDFLFK 66

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +F    EG++S +  SLV   T +  AR++ L  ++ +             SI +D +E+
Sbjct: 67  NFPDMAEGQMSKKRASLVCEPTLAYCARQIGLGKYLMLGKGEDMGGGRNRDSILSDALEA 126

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +I ++YLDGGIE AG+F+  +     ++     +D+KT LQE           Y+V   +
Sbjct: 127 VIGSIYLDGGIEQAGSFIMTHVL-NDIEHKAMFQDSKTILQELLQKDHKDPITYEVVDMT 185

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           GP+H+  F + V++      +G   +K+AA Q AA   +
Sbjct: 186 GPEHNRMFVMQVKLGDRVIGKGSGRTKQAAGQEAAYHAI 224


>gi|167549387|ref|ZP_02343146.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|167992712|ref|ZP_02573808.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168232159|ref|ZP_02657217.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168238326|ref|ZP_02663384.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168245106|ref|ZP_02670038.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168261368|ref|ZP_02683341.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|168466658|ref|ZP_02700512.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|168821429|ref|ZP_02833429.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194443007|ref|YP_002041844.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194450415|ref|YP_002046643.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194472117|ref|ZP_03078101.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194733998|ref|YP_002115644.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197247832|ref|YP_002147539.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197262390|ref|ZP_03162464.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|198245284|ref|YP_002216648.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|200387478|ref|ZP_03214090.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204929592|ref|ZP_03220666.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|213425276|ref|ZP_03358026.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi
           str. E02-1180]
 gi|213585348|ref|ZP_03367174.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
 gi|213613049|ref|ZP_03370875.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
 gi|213646353|ref|ZP_03376406.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi
           str. J185]
 gi|213859103|ref|ZP_03385074.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi
           str. M223]
 gi|238912699|ref|ZP_04656536.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|289825501|ref|ZP_06544708.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-3139]
 gi|194401670|gb|ACF61892.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194408719|gb|ACF68938.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194458481|gb|EDX47320.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194709500|gb|ACF88721.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|195630694|gb|EDX49286.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|197211535|gb|ACH48932.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197240645|gb|EDY23265.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197288832|gb|EDY28205.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|197939800|gb|ACH77133.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|199604576|gb|EDZ03121.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204321311|gb|EDZ06511.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205325334|gb|EDZ13173.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205329152|gb|EDZ15916.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205333647|gb|EDZ20411.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|205336135|gb|EDZ22899.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205341915|gb|EDZ28679.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205349444|gb|EDZ36075.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|312913570|dbj|BAJ37544.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|320087082|emb|CBY96851.1| RNase III, ds RNA [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|321222714|gb|EFX47785.1| Ribonuclease III [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|322613351|gb|EFY10293.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322620445|gb|EFY17310.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322625087|gb|EFY21916.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322629469|gb|EFY26245.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322633856|gb|EFY30595.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322635462|gb|EFY32173.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322639862|gb|EFY36541.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322644252|gb|EFY40796.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322649944|gb|EFY46364.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322654873|gb|EFY51190.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322658199|gb|EFY54465.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322661729|gb|EFY57947.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322669710|gb|EFY65856.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322673283|gb|EFY69388.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322674928|gb|EFY71015.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322682951|gb|EFY78969.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322685612|gb|EFY81607.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323130912|gb|ADX18342.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|323191960|gb|EFZ77198.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323200407|gb|EFZ85488.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323201307|gb|EFZ86374.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323208377|gb|EFZ93317.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323211547|gb|EFZ96385.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323215979|gb|EGA00711.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323221760|gb|EGA06168.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323225632|gb|EGA09859.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323229350|gb|EGA13474.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323235335|gb|EGA19419.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323237479|gb|EGA21542.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323245234|gb|EGA29235.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323248808|gb|EGA32735.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323254012|gb|EGA37833.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323259060|gb|EGA42708.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323261983|gb|EGA45548.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323267766|gb|EGA51247.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323269675|gb|EGA53127.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
 gi|326624403|gb|EGE30748.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
 gi|326628781|gb|EGE35124.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 245

 Score =  260 bits (666), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 74/213 (34%), Positives = 114/213 (53%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 20  MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKH---NERLEFLGDSILSFVIANALY 76

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 77  HRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTVE 136

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  ++K R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 137 ALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 196

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 197 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 229


>gi|145630695|ref|ZP_01786474.1| ribonuclease III [Haemophilus influenzae R3021]
 gi|145641851|ref|ZP_01797426.1| ribonuclease III [Haemophilus influenzae R3021]
 gi|144983821|gb|EDJ91271.1| ribonuclease III [Haemophilus influenzae R3021]
 gi|145273473|gb|EDK13344.1| ribonuclease III [Haemophilus influenzae 22.4-21]
          Length = 227

 Score =  260 bits (666), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 80/226 (35%), Positives = 118/226 (52%), Gaps = 9/226 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              LE++IGY F + +LL++ALTH S +    +  ERLEFLGD IL   I+  L++ F  
Sbjct: 4   LDRLERKIGYRFNDIALLKQALTHRSAA---TQHNERLEFLGDSILNFTIAEALYHQFPR 60

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    +LV   T + +AR+ +L  ++ + S   K+      SI AD VE++I A
Sbjct: 61  CNEGELSRMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVEAIIGA 120

Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           + LD G+ V    +  +++Q    +K G  ++DAKT LQE+   K    P Y+V    G 
Sbjct: 121 MSLDQGLAVTTQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPLPTYEVVNIQGE 180

Query: 184 DHDPRFTVVVEISG----LAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            H   FTV  ++               S+R AEQ AA ++LK   I
Sbjct: 181 AHCQIFTVECKVKSAEKIDRTFVAKGSSRRKAEQAAAEQILKELDI 226


>gi|328952899|ref|YP_004370233.1| Ribonuclease 3 [Desulfobacca acetoxidans DSM 11109]
 gi|328453223|gb|AEB09052.1| Ribonuclease 3 [Desulfobacca acetoxidans DSM 11109]
          Length = 231

 Score =  260 bits (666), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 82/225 (36%), Positives = 119/225 (52%), Gaps = 5/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLIST 57
           M+ +  + LE+++ Y+F NR  LE+AL HSS ++ +     S ERLEF GD +L L IS 
Sbjct: 1   MTDIHLTELERQLRYSFKNRRWLEQALVHSSYAYEFPLQGPSNERLEFFGDAVLSLFISD 60

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            L  ++  A EG LS    SLV+A   + +AR LDL   +R+     +       S+ AD
Sbjct: 61  FLMEYYPQAGEGLLSRWRASLVNARHLAGIARSLDLGGHLRLGRGEEQQSGRRKPSVLAD 120

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEY 175
            +E+++AA+YLDGG   A   V   ++     L+     +D KT LQE+A     VTP Y
Sbjct: 121 ALEAVLAAVYLDGGFAAARGVVKLLFQASLTRLEDKASMQDFKTLLQEYAQKNLKVTPTY 180

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +V   +GP H   F V V ++     +G   SK+ A Q AA   L
Sbjct: 181 RVVTATGPAHARTFEVEVWLADQPWGRGQGKSKKQAAQEAARLAL 225


>gi|90420862|ref|ZP_01228767.1| ribonuclease III [Aurantimonas manganoxydans SI85-9A1]
 gi|90334837|gb|EAS48609.1| ribonuclease III [Aurantimonas manganoxydans SI85-9A1]
          Length = 252

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 123/236 (52%), Positives = 155/236 (65%), Gaps = 10/236 (4%)

Query: 1   MSALR----YSTLEKRIGYAFANRSLLEKALTHSSISH------SYQESYERLEFLGDRI 50
           M+ L+       LE RIG  F  ++  E+ALTHSS+          + SYERLEFLGDR+
Sbjct: 13  MARLKADKPLEELESRIGITFHEKARFERALTHSSLRSSKGGKGEGERSYERLEFLGDRV 72

Query: 51  LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110
           LGL+++  LF+ F  A EGELS+R NSLVSA+TC+++A EL L  F+R   DL+K     
Sbjct: 73  LGLVVAEKLFDMFPGADEGELSLRLNSLVSADTCAEIADELGLYEFVRHGGDLKKLKSDR 132

Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170
             SI+AD+VESLIAA+YL  G+E A  F+ +YW  R  KS   RRDAKT LQEWAH +  
Sbjct: 133 TKSIRADLVESLIAAIYLGEGLETARDFIVRYWGGRLGKSVAARRDAKTALQEWAHTRGP 192

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           VTP+Y++  RSGPDHDP FTV V I  +APA G   S+R AEQ AA  VL RE +W
Sbjct: 193 VTPQYEIVERSGPDHDPLFTVRVSIPDVAPADGQGRSRRIAEQEAATAVLIRESVW 248


>gi|27380172|ref|NP_771701.1| RNase III [Bradyrhizobium japonicum USDA 110]
 gi|27353326|dbj|BAC50326.1| RNase III [Bradyrhizobium japonicum USDA 110]
          Length = 273

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 99/222 (44%), Positives = 142/222 (63%), Gaps = 3/222 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           + LE RIG++FA+ +LL + +TH S         +SY+RLEFLGD +LGL++S +L++ F
Sbjct: 46  AALEARIGHSFADPNLLMQGITHVSALKSGRKRGDSYQRLEFLGDHVLGLVVSDMLYHAF 105

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            +A EGELS R   LV  E+C+ VA+ L L   I++ S           S+  D+ E++I
Sbjct: 106 PNADEGELSKRLAELVRKESCADVAKSLGLLDDIKLGSVGPSADARLRKSVLGDICEAVI 165

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            A++LDGG   A  FV + W +R  K  +  RD KT LQEWA  K   TP Y+   R+GP
Sbjct: 166 GAIFLDGGHAAAAEFVKRNWTERMHKPRRPLRDPKTVLQEWAQGKGLPTPVYREVERTGP 225

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            HDP+F V V++ GLAPA+G+  SKRAAE+VAA+ +++REG+
Sbjct: 226 HHDPQFRVAVDLPGLAPAEGIGGSKRAAEKVAASVMIEREGV 267


>gi|297620496|ref|YP_003708633.1| ribonuclease III [Waddlia chondrophila WSU 86-1044]
 gi|297375797|gb|ADI37627.1| ribonuclease III [Waddlia chondrophila WSU 86-1044]
          Length = 252

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 80/220 (36%), Positives = 118/220 (53%), Gaps = 4/220 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHF 63
           S +E +IG+ F ++ LL  A TH S  +      E  ERLE+LGD ILG LI+  L+ + 
Sbjct: 21  SEIEAKIGHTFKDKQLLSLAFTHRSYINENNDAHEHNERLEYLGDSILGFLIAEYLYKYL 80

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            +  EGELS   + LV A +C    ++LDL  ++ +    + +      SI AD+ ESLI
Sbjct: 81  PNTPEGELSYLRSRLVEASSCVIYVQKLDLEQYLLLGKGEQMNDGRGRDSILADLFESLI 140

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFRSG 182
            A+YLDGG++ A  F+ K + +   +  K    + K +LQ++   K+   P YKV   SG
Sbjct: 141 GAIYLDGGMDAARLFLFKNFSKEIEEILKTPICNWKAQLQDYCQKKYRHPPLYKVVSESG 200

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           PDH   FT+ V I+      G   SK+ A+Q AA +   R
Sbjct: 201 PDHQKIFTISVLINNQEVGHGEGPSKKEAQQAAAKDAFSR 240


>gi|319405458|emb|CBI79077.1| ribonuclease III [Bartonella sp. AR 15-3]
          Length = 235

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 110/226 (48%), Positives = 147/226 (65%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M       LEK  G++F +   L++ALTH+S+  S   +YERLEFLGDR+LGLLI+ +L+
Sbjct: 1   MKYHVIDQLEKLTGHSFKDVDRLKRALTHASVQSSENGNYERLEFLGDRVLGLLIAEMLY 60

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELSVR N LV+A+TC+ +A E+ L+  + V  +++      + ++ ADV+E
Sbjct: 61  KIFPQASEGELSVRLNGLVNAQTCADIALEMGLSDMVHVGCEMKNLEGRRLANVYADVIE 120

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +LIA +YLDGG+E     + +YW+ RA K    RRDAKTELQEWAH +    P Y+V  R
Sbjct: 121 ALIAVIYLDGGLESVRPVIQRYWQDRAKKMNAGRRDAKTELQEWAHTQDNAQPHYQVVQR 180

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
            GPDHDP F V V I G AP  G   SKR AE+ AA  +L+REGIW
Sbjct: 181 YGPDHDPIFIVEVSICGYAPEIGRGSSKRQAERDAAERILRREGIW 226


>gi|295706311|ref|YP_003599386.1| ribonuclease III [Bacillus megaterium DSM 319]
 gi|294803970|gb|ADF41036.1| ribonuclease III [Bacillus megaterium DSM 319]
          Length = 265

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 106/225 (47%), Gaps = 5/225 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58
              ++  +K IG  F N +LL +A THSS  + ++    E  ERLEFLGD +L L +S  
Sbjct: 34  KQNFAEFQKEIGIQFTNEALLFQAFTHSSYVNEHRRRPYEDNERLEFLGDAVLELTVSQF 93

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF  + +  EGEL+    ++V   +    A E+D    + +             ++ ADV
Sbjct: 94  LFKKYPTMSEGELTKLRAAVVCEPSLVTFANEMDFGKLVLLGKGEEMTGGRSRPALLADV 153

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKV 177
            E+ I ALYLD G++   T + K    +  +       D K++LQE          EYKV
Sbjct: 154 FEAFIGALYLDQGLDTVVTILKKVVFPKINEGAFSHVMDFKSQLQEVIQRDGVGQLEYKV 213

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
               GP H+  F   V ++G     G+  SK+ AEQ AA   + +
Sbjct: 214 LQEKGPAHNREFLSRVSLNGEELGVGVGRSKKEAEQKAAQVAITK 258


>gi|16078656|ref|NP_389475.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. 168]
 gi|221309468|ref|ZP_03591315.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. 168]
 gi|221313793|ref|ZP_03595598.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. NCIB 3610]
 gi|221318717|ref|ZP_03600011.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221322988|ref|ZP_03604282.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. SMY]
 gi|321315359|ref|YP_004207646.1| ribonuclease III [Bacillus subtilis BSn5]
 gi|7531275|sp|P51833|RNC_BACSU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|2633965|emb|CAB13466.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. 168]
 gi|291484144|dbj|BAI85219.1| ribonuclease III [Bacillus subtilis subsp. natto BEST195]
 gi|320021633|gb|ADV96619.1| ribonuclease III [Bacillus subtilis BSn5]
          Length = 249

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 108/225 (48%), Gaps = 5/225 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59
            ++   ++RI   F N  LL +A THSS  + ++    E  ERLEFLGD +L L IS  L
Sbjct: 18  EQFKEFQERISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISRFL 77

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F  + +  EG+L+    ++V   +   +A EL     + +             ++ ADV 
Sbjct: 78  FAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVF 137

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVT 178
           E+ I ALYLD G+E   +F+  Y   +          D K++LQE+       + EYK++
Sbjct: 138 EAFIGALYLDQGLEPVESFLKVYVFPKINDGAFSHVMDFKSQLQEYVQRDGKGSLEYKIS 197

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              GP H+  F  +V + G     G   SK+ AEQ AA E L + 
Sbjct: 198 NEKGPAHNREFEAIVSLKGEPLGVGNGRSKKEAEQHAAQEALAKL 242


>gi|154253314|ref|YP_001414138.1| ribonuclease III [Parvibaculum lavamentivorans DS-1]
 gi|154157264|gb|ABS64481.1| Ribonuclease III [Parvibaculum lavamentivorans DS-1]
          Length = 226

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 92/220 (41%), Positives = 128/220 (58%), Gaps = 3/220 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L+ R+ + F +  LL +ALTH S       +Y+R EFLGDR+LGL+I+  L   F  A
Sbjct: 6   AALQVRLAHDFKDLGLLSRALTHPSAD---GANYQRFEFLGDRVLGLVIADWLLRDFPQA 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGEL++R+N+LV  E C++VA  + L + I + +   K       +I AD  E++IAAL
Sbjct: 63  DEGELAIRYNALVRKEACAEVAERIGLGACITMGAGEEKAGGRRKPAILADACEAVIAAL 122

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           Y DGG++ A  F++  W     KS +  +DAKT LQEWA A+    P Y +  RSGPDH 
Sbjct: 123 YTDGGLQAARRFIETEWAYLVEKSSEIPQDAKTALQEWAQARGQGVPTYTLVGRSGPDHA 182

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           P FTV V      P +    SKR AEQ AA  +L+  G+W
Sbjct: 183 PEFTVEVSAGKAKPLRAQGNSKRQAEQTAARALLEALGVW 222


>gi|18310700|ref|NP_562634.1| ribonuclease III [Clostridium perfringens str. 13]
 gi|168210649|ref|ZP_02636274.1| ribonuclease III [Clostridium perfringens B str. ATCC 3626]
 gi|168214195|ref|ZP_02639820.1| ribonuclease III [Clostridium perfringens CPE str. F4969]
 gi|168217005|ref|ZP_02642630.1| ribonuclease III [Clostridium perfringens NCTC 8239]
 gi|182625857|ref|ZP_02953623.1| ribonuclease III [Clostridium perfringens D str. JGS1721]
 gi|22654058|sp|Q8XJN8|RNC_CLOPE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|18145381|dbj|BAB81424.1| ribonuclease III [Clostridium perfringens str. 13]
 gi|170711273|gb|EDT23455.1| ribonuclease III [Clostridium perfringens B str. ATCC 3626]
 gi|170714262|gb|EDT26444.1| ribonuclease III [Clostridium perfringens CPE str. F4969]
 gi|177908891|gb|EDT71383.1| ribonuclease III [Clostridium perfringens D str. JGS1721]
 gi|182380899|gb|EDT78378.1| ribonuclease III [Clostridium perfringens NCTC 8239]
          Length = 237

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 83/228 (36%), Positives = 122/228 (53%), Gaps = 4/228 (1%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58
           M  +    +EK IG  F N+ +L  ALTHSS ++ ++  +  ERLEFLGD +L L ++  
Sbjct: 1   MKDINLIEVEKLIGIEFENKGVLITALTHSSYANQFKDVKYNERLEFLGDSVLQLCVTKY 60

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LFN++    EGEL+     +V   +  +V++ L L  +IR+S           TSIQAD 
Sbjct: 61  LFNNYKDKSEGELTKIRALVVCENSLHKVSKNLSLGKYIRMSKGEELTGGRERTSIQADA 120

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYK 176
           +E++IAA+YLD GIEVA  F+ + +K    K+   +   D KT LQE       V   Y 
Sbjct: 121 LEAVIAAVYLDKGIEVANDFILRNFKDVIDKAINEEIILDFKTRLQEVLQKNGEVNIVYN 180

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +    GP H  +F   + I+     QG+  SK+ +EQ AA   L+R G
Sbjct: 181 LVKHEGPPHRRKFFTDLLINNEIMGQGVGFSKKESEQNAAKAALQRLG 228


>gi|312868336|ref|ZP_07728536.1| ribonuclease III [Streptococcus parasanguinis F0405]
 gi|311096081|gb|EFQ54325.1| ribonuclease III [Streptococcus parasanguinis F0405]
          Length = 233

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 116/227 (51%), Gaps = 8/227 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + L +R    F++ SLL+ A TH+S ++ ++       ERLEFLGD +L L+IS
Sbjct: 1   MEKLQ-ALLSERFQIVFSDSSLLDTAFTHTSYANEHRLLKISHNERLEFLGDAVLQLVIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+    +  EG+LS   + +V  E+ +  +R+     +I++     K       +I  
Sbjct: 60  EYLYKEHPNRPEGDLSKFRSMIVREESLAGFSRDCQFDHYIKLGKGEEKSGGRDRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D+ E+ + AL LD G+E    F+ +    + +++G+F +  D KT LQE       V  +
Sbjct: 120 DLFEAFLGALLLDQGVEAVKRFIYQVMIPK-VETGQFSQVIDYKTRLQELLQVHGDVEIQ 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           Y+V   +GP H   F V V ++G     G   SK+ AEQ AA   ++
Sbjct: 179 YQVVSEAGPAHAKEFEVEVFVNGQTMGHGHGRSKKLAEQEAARNAVE 225


>gi|25010800|ref|NP_735195.1| ribonuclease III [Streptococcus agalactiae NEM316]
 gi|76788414|ref|YP_329471.1| ribonuclease III [Streptococcus agalactiae A909]
 gi|76798198|ref|ZP_00780449.1| ribonuclease III [Streptococcus agalactiae 18RS21]
 gi|77406421|ref|ZP_00783480.1| ribonuclease III [Streptococcus agalactiae H36B]
 gi|77408361|ref|ZP_00785102.1| ribonuclease III [Streptococcus agalactiae COH1]
 gi|77410795|ref|ZP_00787153.1| ribonuclease III [Streptococcus agalactiae CJB111]
 gi|77413080|ref|ZP_00789281.1| ribonuclease III [Streptococcus agalactiae 515]
 gi|81457210|sp|Q8E680|RNC_STRA3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|90101649|sp|Q3K1Y2|RNC_STRA1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|90101650|sp|Q8E0K7|RNC_STRA5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|23095154|emb|CAD46389.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76563471|gb|ABA46055.1| ribonuclease III [Streptococcus agalactiae A909]
 gi|76586461|gb|EAO62968.1| ribonuclease III [Streptococcus agalactiae 18RS21]
 gi|77160873|gb|EAO71983.1| ribonuclease III [Streptococcus agalactiae 515]
 gi|77163174|gb|EAO74127.1| ribonuclease III [Streptococcus agalactiae CJB111]
 gi|77173042|gb|EAO76170.1| ribonuclease III [Streptococcus agalactiae COH1]
 gi|77174985|gb|EAO77795.1| ribonuclease III [Streptococcus agalactiae H36B]
          Length = 228

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 83/225 (36%), Positives = 117/225 (52%), Gaps = 6/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  LR S LEK  G  FAN+ LL+ A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MKELR-SKLEKDYGIVFANQELLDTAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  +    EG+LS   + +V  E+ +  +R      +I++     K       +I  
Sbjct: 60  QYLFTKYPQKAEGDLSKLRSMIVREESLAGFSRLCGFDHYIKLGKGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + AL LD G+EV   FV+K       K   +  +D KT LQE   +   V  +Y
Sbjct: 120 DLFEAFLGALLLDKGVEVVHAFVNKVMIPHVEKGTYERVKDYKTSLQELLQSHGDVKIDY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +VT  SGP H   F V V ++    +QG+  SK+AAEQ AA   L
Sbjct: 180 QVTNESGPAHAKEFEVTVSVNQENLSQGIGRSKKAAEQDAAKNAL 224


>gi|319896432|ref|YP_004134625.1| ribonuclease iii [Haemophilus influenzae F3031]
 gi|317431934|emb|CBY80282.1| Ribonuclease III [Haemophilus influenzae F3031]
          Length = 227

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 81/226 (35%), Positives = 118/226 (52%), Gaps = 9/226 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              LE++IGY F +  LL++ALTH S +    +  ERLEFLGD IL   I+  L++ F  
Sbjct: 4   LDRLERKIGYCFNDIVLLKQALTHRSAA---TQHNERLEFLGDSILNFTIAEALYHQFPR 60

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    +LV   T + +AR+ +L  ++ + S   K+      SI AD VE++I A
Sbjct: 61  CNEGELSRMRATLVRESTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVEAIIGA 120

Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           + LD G+ V    +  +++Q    +K G  ++DAKT LQE+   K    P Y+V    G 
Sbjct: 121 MSLDQGLAVTTQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPLPTYEVVNIQGE 180

Query: 184 DHDPRFTVVVEIS--GL--APAQGMDCSKRAAEQVAAAEVLKREGI 225
            H   FTV  ++   G           S+R AEQ AA ++LK   I
Sbjct: 181 AHCQIFTVECKVKSAGKIDRTFVAKGSSRRKAEQAAAEQILKELDI 226


>gi|167758292|ref|ZP_02430419.1| hypothetical protein CLOSCI_00630 [Clostridium scindens ATCC 35704]
 gi|167664189|gb|EDS08319.1| hypothetical protein CLOSCI_00630 [Clostridium scindens ATCC 35704]
          Length = 235

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 82/223 (36%), Positives = 115/223 (51%), Gaps = 5/223 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
               LEK+IGY F +  LL+KA+ HSS ++       E  ERLEFLGD +L L+ S  LF
Sbjct: 8   ELKELEKKIGYTFKDLQLLKKAMLHSSYANEKHLPKYECNERLEFLGDAVLELVSSEFLF 67

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
              +   EGEL+    S+V     +  AREL L  ++ +             SI +D +E
Sbjct: 68  YEHEKMPEGELTKTRASMVCEPALAFCARELSLGEYLLLGKGEEATGGRKRESITSDAME 127

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +LI A+Y+DGG   A  F+ ++  Q  L+  K   D+KT LQE   A F  T  Y++   
Sbjct: 128 ALIGAIYIDGGFASAKEFIHRFILQ-DLEDKKLFFDSKTILQEIVQANFKETISYRLVRE 186

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            GPDHD  F V+V I       G   +K+AAEQ AA + + + 
Sbjct: 187 EGPDHDKSFHVMVYIGEEEYGLGKGRTKKAAEQEAAYQSILKL 229


>gi|42523419|ref|NP_968799.1| ribonuclease III [Bdellovibrio bacteriovorus HD100]
 gi|81617308|sp|Q6MLR5|RNC_BDEBA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|39575625|emb|CAE79792.1| ribonuclease III [Bdellovibrio bacteriovorus HD100]
          Length = 234

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 81/221 (36%), Positives = 120/221 (54%), Gaps = 6/221 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHF 63
            +LE+R+G+ F N +LLE+ALTH S ++  +   E  E+LEFLGD +L L++   L+  F
Sbjct: 7   KSLEERVGHQFKNPALLERALTHKSFANELRNTVEHNEKLEFLGDAVLDLVVGEFLYEKF 66

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            +  EG LS +  S+V+ E  S++A E+ L   +++         +    + A   E+++
Sbjct: 67  PTDTEGGLSKKRASIVNEEVLSELALEMGLNKLMQLGKGEALTGGAQKPRLIASSFEAIV 126

Query: 124 AALYLDGGIEVAGTFVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            ALYLDGG EVA +F+ + +     R      F RD KT LQE        TP Y+V   
Sbjct: 127 GALYLDGGFEVARSFIRQEFVPLADRVCGHEDFERDYKTRLQELVQKSSKETPRYEVLAE 186

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            GP HD  F V V++     AQG   SK+ AEQ+AA   L+
Sbjct: 187 EGPPHDREFLVCVKVKEDVWAQGRGRSKKNAEQMAAKNALE 227


>gi|322391777|ref|ZP_08065242.1| ribonuclease III [Streptococcus peroris ATCC 700780]
 gi|321145257|gb|EFX40653.1| ribonuclease III [Streptococcus peroris ATCC 700780]
          Length = 232

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 109/227 (48%), Gaps = 6/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + L+ R    FA+++LLE A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MKELQ-TVLKNRFAIEFADQNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS     +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDEFIKLGKGEEKSGGRHRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEY 175
           D  E+ + AL LD  +     F+      +      +   D KT LQE       V   Y
Sbjct: 120 DAFEAFLGALLLDKDVATVKNFIYTVMIPKVETGDFEMITDYKTHLQELLQVNGDVDICY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +VT  +GP HD  F V V + G +  +G   SK+ AEQ AA   +++
Sbjct: 180 QVTSETGPAHDKIFEVEVLVEGTSIGKGQGRSKKLAEQEAAKNAVEK 226


>gi|258514469|ref|YP_003190691.1| ribonuclease III [Desulfotomaculum acetoxidans DSM 771]
 gi|257778174|gb|ACV62068.1| ribonuclease III [Desulfotomaculum acetoxidans DSM 771]
          Length = 259

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 77/222 (34%), Positives = 113/222 (50%), Gaps = 6/222 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLF 60
               L +++G A+ + +LL +ALTHSS  +        + +RLEFLGD +L LL+S  L+
Sbjct: 7   NIMQLMQQVGVAWNDENLLWQALTHSSYVYESGSAAHTNNQRLEFLGDAVLELLVSGYLY 66

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + +    EGEL+    ++V   + ++VAR+L+L   +R+     +       SI AD  E
Sbjct: 67  SSYPECAEGELTKLRAAIVCEPSLAKVARQLNLGYCLRMGKGEERSGGRERPSILADSFE 126

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +L+ A+YLD G+E    F  K+       +  G+  RD KTELQE    K      Y + 
Sbjct: 127 ALLGAVYLDQGLEKTRMFALKFLAPVINDVLEGRVDRDYKTELQEMLQKKSPEPISYVIL 186

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
              GPDH   FT  V   G+   QG   SK+ AEQ AA   L
Sbjct: 187 NEEGPDHQKLFTAGVVYCGIIIGQGTGRSKKEAEQQAAKIAL 228


>gi|284032688|ref|YP_003382619.1| ribonuclease III [Kribbella flavida DSM 17836]
 gi|283811981|gb|ADB33820.1| ribonuclease III [Kribbella flavida DSM 17836]
          Length = 249

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 80/222 (36%), Positives = 110/222 (49%), Gaps = 6/222 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
           Y+ L +R+G + A+  LLE A TH S ++      + ERLEFLGD +LG++++  LF + 
Sbjct: 16  YAELNQRLGVSLAD-ELLEHAFTHRSFAYENGGLPTNERLEFLGDSVLGVIVTESLFRNH 74

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG L+    ++V+    + VAR+L L  ++R+            +SI AD VE+LI
Sbjct: 75  PDLSEGRLAKLRAAVVNMRALAGVARDLKLGKYLRLGRGEEATGGRDKSSILADCVEALI 134

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+YLD G EVAG  V   +      S +     D KT LQE         PEY V   S
Sbjct: 135 GAVYLDRGFEVAGRVVHTLFDDLMESSARLGAGLDWKTSLQELVAQLGVGVPEY-VIAES 193

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           GPDH   F   V I       G+  SK+ AEQ AA    K  
Sbjct: 194 GPDHAKTFEARVRIGSDTYGHGIGRSKKEAEQQAAETAWKAL 235


>gi|307545610|ref|YP_003898089.1| ribonuclease III [Halomonas elongata DSM 2581]
 gi|307217634|emb|CBV42904.1| ribonuclease III [Halomonas elongata DSM 2581]
          Length = 229

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 79/218 (36%), Positives = 115/218 (52%), Gaps = 6/218 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
             +RIG+ FA   LLE A+TH S       + ERLEFLGD I+  +I+  LF  F  A+E
Sbjct: 8   FSRRIGHRFAQPELLELAMTHRSYG---GRNNERLEFLGDSIVNFVIAEDLFQRFPQARE 64

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS     LV  +T +++ARE+     +R+ S   K       SI AD VE++I A+YL
Sbjct: 65  GQLSRLRARLVKGQTLAELAREMSFGECLRLGSGEMKSGGHRRDSILADAVEAVIGAIYL 124

Query: 129 DGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D G++ A T V  ++ +R   +     ++D KT LQE+  ++    P Y+V    G  H 
Sbjct: 125 DAGMDTARTRVLSWFAERLETINLQDTQKDPKTRLQEFLQSRQVALPRYEVISVEGEAHA 184

Query: 187 PRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
             FTV   +  L     G+  S+R AEQ AA + L + 
Sbjct: 185 QTFTVECHVEMLDEHTLGIGSSRRHAEQQAAEQALSQL 222


>gi|312143881|ref|YP_003995327.1| ribonuclease III [Halanaerobium sp. 'sapolanicus']
 gi|311904532|gb|ADQ14973.1| ribonuclease III [Halanaerobium sp. 'sapolanicus']
          Length = 238

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 76/212 (35%), Positives = 111/212 (52%), Gaps = 6/212 (2%)

Query: 18  ANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           +N+ LL++ALTH S  +  +    +  ERLEFLGD +L L +ST +FN F    EGEL+ 
Sbjct: 22  SNKKLLQRALTHKSFPNENKNLSIKDNERLEFLGDSVLSLAVSTYIFNKFSDFPEGELAK 81

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
               +VSA   ++ A++L+L  ++ +             SI AD +E++  ALYLD G  
Sbjct: 82  MRAVVVSAPILAEAAKKLELGRYLFLGKGEEMTGGRERDSILADSMEAIFGALYLDQGFT 141

Query: 134 VAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
            A  FV K  K+  + +  G   +D KT LQE       + PEY+V    GPDH+  F V
Sbjct: 142 AASDFVLKILKEDIKEVAMGNHIQDYKTMLQEIIQQDGNIRPEYEVIDEKGPDHNKTFIV 201

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            V++   +   G   SK+ AEQ AA   L + 
Sbjct: 202 AVKLKENSLGSGQGSSKKEAEQEAAKFALHKL 233


>gi|37681015|ref|NP_935624.1| ribonuclease III [Vibrio vulnificus YJ016]
 gi|37199765|dbj|BAC95595.1| dsRNA-specific ribonuclease [Vibrio vulnificus YJ016]
          Length = 259

 Score =  260 bits (664), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 74/213 (34%), Positives = 112/213 (52%), Gaps = 7/213 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M++     L +++GY F +  LL  ALTH S +  +    ERLEFLGD IL  +I+  L+
Sbjct: 35  MNS-PIEKLTRQLGYQFQDDELLNLALTHRSANSKH---NERLEFLGDSILSFVIADELY 90

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ RE  L  ++++     K       SI AD VE
Sbjct: 91  HRFPKVNEGDMSRMRATLVRGNTLAELGREFGLGDYLKLGPGELKSGGFRRDSILADAVE 150

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD  +EV    V  ++  R  A+K G  ++D KT LQE+   +    P Y VT
Sbjct: 151 AIIGAVYLDSDLEVVRGIVLNWYASRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVT 210

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  H+  FTV  +I+G+  P  G   S+R 
Sbjct: 211 NIKGEAHNQEFTVECDIAGMDKPVVGRGTSRRK 243


>gi|302036171|ref|YP_003796493.1| ribonuclease III [Candidatus Nitrospira defluvii]
 gi|300604235|emb|CBK40567.1| Ribonuclease III [Candidatus Nitrospira defluvii]
          Length = 234

 Score =  260 bits (664), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 80/231 (34%), Positives = 119/231 (51%), Gaps = 9/231 (3%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLIST 57
            A     +++ +GY F    LLE+ALTH S S+  +       ERLEFLGD +L L++S 
Sbjct: 3   PATSIEAVQRLLGYRFHQPRLLEEALTHKSYSNERRSRDRTQNERLEFLGDAVLSLVMSE 62

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            L   F  + EG LS     LVS  + ++ AR + L   +R+             S+ AD
Sbjct: 63  YLAAEFPGSNEGGLSKLKAHLVSEASLAKAARRMKLGRLLRLGKGEELSKGREKHSLLAD 122

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-----RDAKTELQEWAHAKFGVT 172
            +E+LIAA+YLDGG+E +  F  +  ++  L +   +      D KT+LQE    ++   
Sbjct: 123 ALEALIAAIYLDGGLEASRKFTLQVLEEELLATRAEQARPGMEDYKTQLQEVCQKRYESL 182

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           P+Y+    SGPDH+  F V + I G+    G   SK+ AEQ+AA E L + 
Sbjct: 183 PQYETVRESGPDHEKVFEVELTIQGVMRGIGRGRSKKEAEQMAAKEALTQL 233


>gi|224372163|ref|YP_002606535.1| ribonuclease III [Nautilia profundicola AmH]
 gi|223589278|gb|ACM93014.1| ribonuclease III [Nautilia profundicola AmH]
          Length = 226

 Score =  260 bits (664), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 78/225 (34%), Positives = 123/225 (54%), Gaps = 7/225 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++ S LEK +GY F N+ L+ +ALTH S       + ERLEFLGD ++ L++   LF+ F
Sbjct: 1   MQISELEKSLGYQFKNKKLITEALTHRSYKKEV--NNERLEFLGDAVMDLIVGEYLFHLF 58

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A+EG LS    +LV+ ++ +++A+ L+L  ++ +S     +      SI +   E++I
Sbjct: 59  PKAEEGILSKLRAALVNEDSFTRLAKRLNLGKYLYLSPAEENNNGREKPSILSSAFEAVI 118

Query: 124 AALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+YL+ G E A     +  K+    +   +  +D KT LQE   A FGV PEY++   S
Sbjct: 119 GAIYLEAGFEKAKDVALRLLKEEFPIITPEELLKDYKTTLQEITQAHFGVVPEYRLISAS 178

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA---EVLKRE 223
           GPDH   F + V I     A+    SK+ A+Q  A    ++LK+E
Sbjct: 179 GPDHKKEFEIGVFIQDKEYARAKGKSKKTAQQEGARLTIDMLKKE 223


>gi|149910155|ref|ZP_01898801.1| ribonuclease III [Moritella sp. PE36]
 gi|149806741|gb|EDM66705.1| ribonuclease III [Moritella sp. PE36]
          Length = 223

 Score =  260 bits (664), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 83/225 (36%), Positives = 122/225 (54%), Gaps = 7/225 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +    L+  +GY + +  LL++ALTH S  + +    ERLEFLGD +LG +IS  LF
Sbjct: 1   MTII-LERLQTVLGYQYQDAGLLQQALTHRSAYYKH---NERLEFLGDSVLGFIISDALF 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG+LS    +LV   T +++ARE +L+  + +     K       SI AD VE
Sbjct: 57  RQFPEVPEGDLSRMRATLVKGLTLAEIAREFELSECLILGPGELKSGGFRRESILADTVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI A+YLD  IE     V  ++  R   ++ G  ++DAKT+LQEW   +    P Y+V 
Sbjct: 117 ALIGAMYLDSDIEKTRERVLAWYASRLATIEPGIGQKDAKTQLQEWLQGRKQPLPLYQVV 176

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKR 222
              G  H+  FT+   I GL  P +G   S+R AEQ AA + L++
Sbjct: 177 EVRGEAHNQEFTIHCVIEGLDHPVEGKGTSRRKAEQEAAQKALEQ 221


>gi|30179749|sp|O69161|RNC_BRAJA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
          Length = 250

 Score =  260 bits (664), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 99/222 (44%), Positives = 142/222 (63%), Gaps = 3/222 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           + LE RIG++FA+ +LL + +TH S         +SY+RLEFLGD +LGL++S +L++ F
Sbjct: 23  AALEARIGHSFADPNLLMQGITHVSALKSGRKRGDSYQRLEFLGDHVLGLVVSDMLYHAF 82

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            +A EGELS R   LV  E+C+ VA+ L L   I++ S           S+  D+ E++I
Sbjct: 83  PNADEGELSKRLAELVRKESCADVAKSLGLLDDIKLGSVGPSADARLRKSVLGDICEAVI 142

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            A++LDGG   A  FV + W +R  K  +  RD KT LQEWA  K   TP Y+   R+GP
Sbjct: 143 GAIFLDGGHAAAAEFVKRNWTERMHKPRRPLRDPKTVLQEWAQGKGLPTPVYREVERTGP 202

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            HDP+F V V++ GLAPA+G+  SKRAAE+VAA+ +++REG+
Sbjct: 203 HHDPQFRVAVDLPGLAPAEGIGGSKRAAEKVAASVMIEREGV 244


>gi|225868184|ref|YP_002744132.1| ribonuclease III [Streptococcus equi subsp. zooepidemicus]
 gi|259646553|sp|C0MCR4|RNC_STRS7 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|225701460|emb|CAW98596.1| ribonuclease III [Streptococcus equi subsp. zooepidemicus]
          Length = 230

 Score =  260 bits (664), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 73/229 (31%), Positives = 116/229 (50%), Gaps = 8/229 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L  + LE      F ++ LLE A TH+S ++ ++       ERLEFLGD +L L+IS
Sbjct: 1   MKKLE-ALLENSFNIRFDDKRLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  +    EG++S   +++V  E+ +  +R     ++I++     K       +I  
Sbjct: 60  EYLFAKYPKQTEGDMSKLRSTIVREESLAGFSRYCSFDAYIKLGKGEEKSGGRHRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPE 174
           D+ E+ + AL LD GIE    F+++    + ++ G F   +D KT LQE   AK  V  +
Sbjct: 120 DLFEAFLGALLLDKGIEEVRRFLNQVMIPQ-VEQGTFEKVKDYKTCLQELLQAKGDVVID 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           Y+V   +GP H  +F V V +     ++G   SK+ AEQ AA   L + 
Sbjct: 179 YQVISETGPAHAKQFEVAVLVDEDRLSKGTGRSKKLAEQDAAKNALAQL 227


>gi|157374287|ref|YP_001472887.1| ribonuclease III [Shewanella sediminis HAW-EB3]
 gi|189043354|sp|A8FSD6|RNC_SHESH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|157316661|gb|ABV35759.1| Ribonuclease III [Shewanella sediminis HAW-EB3]
          Length = 225

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 82/224 (36%), Positives = 118/224 (52%), Gaps = 6/224 (2%)

Query: 1   MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  ++    L + +GY F ++SLLE ALTH S S  +    ERLEFLGD IL ++IS  L
Sbjct: 1   MEPIKNMPRLCRTLGYEFNDQSLLEHALTHRSASSKH---NERLEFLGDSILSIIISDAL 57

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F+ F  A EG+LS    +LV  +  +++  E  L  ++ +     K       SI AD V
Sbjct: 58  FHQFPKATEGDLSRMRATLVCGKMLAEIGFEFKLGDYLNLGPGELKSGGFRRESIIADAV 117

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           E++I A+Y+D G+E     V  +++ R A+     ++D KT LQE         P YKV 
Sbjct: 118 EAIIGAVYIDSGVEKCRCLVLSWYESRLAIIQPVNQKDPKTLLQELLQGFKKPLPVYKVI 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLK 221
              G  H   FTV   +  L  P  G+  S+R AEQ+AAA+ L+
Sbjct: 178 DIKGEAHAQTFTVECYVEELSKPVIGIASSRRKAEQLAAADALE 221


>gi|306829619|ref|ZP_07462809.1| ribonuclease III [Streptococcus mitis ATCC 6249]
 gi|304428705|gb|EFM31795.1| ribonuclease III [Streptococcus mitis ATCC 6249]
          Length = 232

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 110/227 (48%), Gaps = 6/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + L+ R    FA++ LLE A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MKELQ-TVLKDRFAIEFADKKLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS     +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYKKYPRKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEY 175
           D  E+ + AL LD  +     F+ +    +      +  +D KT LQE       V   Y
Sbjct: 120 DAFEAFLGALLLDKDVVRVKEFIYQVMIPKVEAGDFEMIKDYKTHLQELLQVNGDVDIRY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +VT  +GP HD  F V V + G +  +G   SK+ AEQ AA   +++
Sbjct: 180 QVTSETGPAHDKIFDVEVLVEGKSIGKGQGRSKKLAEQEAAKNAVEK 226


>gi|218132444|ref|ZP_03461248.1| hypothetical protein BACPEC_00303 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992554|gb|EEC58556.1| hypothetical protein BACPEC_00303 [Bacteroides pectinophilus ATCC
           43243]
          Length = 234

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 80/228 (35%), Positives = 119/228 (52%), Gaps = 7/228 (3%)

Query: 1   MS-ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLI 55
           M+ +   + L++ +GY+F + SLL+ ALTHSS ++  +     + ERLEFLGD +L L+ 
Sbjct: 7   MNHSTDLNELQQAMGYSFDDVSLLKHALTHSSYANELRINKTGNNERLEFLGDAVLELVS 66

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S  LFN      EG LS    S+V   + +  AR++ L  +I +             SI 
Sbjct: 67  SEYLFNEHKDVNEGSLSKLRASMVCEPSLAFCARDISLQKYIMLGKGEDATGGRQRDSIT 126

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
           +D +E++I A+YLDGG E A  F+  +     L + K   D+KT LQE   A    TPEY
Sbjct: 127 SDALEAVIGAIYLDGGFEPAKKFIMAHVL-NDLDNKKLFYDSKTILQEILQADNK-TPEY 184

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           ++T   GP+H   F+  V         G   +K+AAEQ AA + + R 
Sbjct: 185 RITGEEGPEHSKTFSAEVLDGSTVLGHGSGHNKKAAEQQAAYDAILRL 232


>gi|319758292|gb|ADV70234.1| dsRNA-specific ribonuclease [Streptococcus suis JS14]
          Length = 228

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 73/225 (32%), Positives = 107/225 (47%), Gaps = 7/225 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           ++ L    G  F++ +LLE A TH+S ++ ++       ERLEFLGD +L L+IS  L+ 
Sbjct: 5   HAKLLDDFGIDFSDLNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLMISKYLYQ 64

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +    EGE+S   ++ V  E+ +  +R      F+R+     K       +I  D  E+
Sbjct: 65  KYPDRPEGEMSKLRSTFVREESLAGFSRACGFDRFLRLGKGEEKSGGRNRDTILGDAFEA 124

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179
            + AL LD G +    F+ K    R L+ G F R  D KT LQE       +   Y+V  
Sbjct: 125 FLGALLLDKGEKTVEEFIHKVMIPR-LEKGNFERVTDYKTALQEILQVNGEIAISYQVIA 183

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            SGP HD  F V V        +G   SK+ AEQ AA   ++  G
Sbjct: 184 ESGPAHDKTFEVEVSADQRVIGRGRGRSKKLAEQAAAKNAVEARG 228


>gi|332074858|gb|EGI85330.1| ribonuclease III [Streptococcus pneumoniae GA41301]
          Length = 232

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 112/228 (49%), Gaps = 8/228 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + L+      F +++LLE A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MKELQ-TVLKNHFAIEFTDKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS     +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D  E+ + AL LD  +     F+ +    + +++G+F    D KT LQE       V   
Sbjct: 120 DAFEAFLGALLLDKDVAKVKEFIYQVMIPK-VEAGEFEMITDYKTHLQELLQVNGDVVIR 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           Y+V   +GP HD  F V V + G +  QG   SK+ AEQ AA   +++
Sbjct: 179 YQVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226


>gi|257464706|ref|ZP_05629077.1| ribonuclease III [Actinobacillus minor 202]
 gi|257450366|gb|EEV24409.1| ribonuclease III [Actinobacillus minor 202]
          Length = 223

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 121/222 (54%), Gaps = 6/222 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++   L+K++GY F     L +ALTH S +    ++ ERLEFLGD IL   I   L++ F
Sbjct: 1   MQLERLQKKLGYQFETLDYLTQALTHRSAA---SKNNERLEFLGDSILNFTIGKALYDKF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EGELS    +LV  +T + +AR+ +L  ++++ +   K       SI +D VE++I
Sbjct: 58  PKADEGELSRMRAALVREQTLAVIARQFELGEYLKLGAGELKSGGFRRESILSDCVEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+YLD G+E A   +  +++     +  G+ ++D KT LQE+   +    PEY+V    
Sbjct: 118 AAIYLDKGMEPAMERIYAWYETFLAEITPGEAQKDPKTRLQEFLQGRKLPLPEYEVIDIK 177

Query: 182 GPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKR 222
           G  H+  F V  ++ G+     G   S+R AEQ  A +VL +
Sbjct: 178 GEAHNQTFKVTCKVQGIDEIFTGQGTSRRKAEQNVAEKVLTQ 219


>gi|304321233|ref|YP_003854876.1| ribonuclease III [Parvularcula bermudensis HTCC2503]
 gi|303300135|gb|ADM09734.1| ribonuclease III [Parvularcula bermudensis HTCC2503]
          Length = 238

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 95/213 (44%), Positives = 126/213 (59%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           G+ F +RSLL +ALTH+S+S    +  ERLEFLGDR+LGLL + LL+  F    EGEL+ 
Sbjct: 22  GHRFDDRSLLARALTHASVSQDGLKDLERLEFLGDRVLGLLAADLLWRRFPDMAEGELAP 81

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           R N+LV  ETC+  AR   L   +R+S+   +       +I  D  ESL+ A+Y+DGG+ 
Sbjct: 82  RLNALVRRETCADAARHWKLGEAVRMSAGEERTGGRNKDAILGDACESLLGAIYIDGGLG 141

Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
            A T  + YW  R  +      DAKT LQEWA  K   TP Y+   R GPDH P FTV V
Sbjct: 142 AAKTAFETYWTPRVEELIDDHADAKTALQEWAQEKGLGTPSYRDIDRDGPDHAPIFTVAV 201

Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
            + GL  A+    +KR+A+  AA  +L REG+W
Sbjct: 202 VVQGLESAEARGPNKRSAQMQAARSILVREGVW 234


>gi|114570121|ref|YP_756801.1| ribonuclease III [Maricaulis maris MCS10]
 gi|114340583|gb|ABI65863.1| RNAse III [Maricaulis maris MCS10]
          Length = 228

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 106/221 (47%), Positives = 136/221 (61%), Gaps = 2/221 (0%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
            + LE+RIGY F ++ L+E+ALTH S +   +   +YERLEFLGDR+LGL+ +  LF  F
Sbjct: 5   IARLEQRIGYVFTDKRLIERALTHGSFAEGRKTIPTYERLEFLGDRVLGLMTAEALFKSF 64

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
           D A EG L+ R NS+V  ETC+ VAR +DL + +R+     K      TSI  D  ESL+
Sbjct: 65  DKADEGALAPRLNSMVRKETCADVARAVDLGAALRIGKSEEKGGGRNKTSILGDACESLM 124

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           AA+YLDGG      F D +W  R         DAK+ LQEWA       P Y++T RSGP
Sbjct: 125 AAIYLDGGRAAVQAFFDHHWGPRIEALKAKPLDAKSALQEWAAKTGRGVPRYELTERSGP 184

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           DH P FTV V ++ LAPA G   SK+ AE+ AA E+LKREG
Sbjct: 185 DHRPVFTVQVTVTPLAPAVGEGGSKQVAERAAAEELLKREG 225


>gi|160938006|ref|ZP_02085363.1| hypothetical protein CLOBOL_02899 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439000|gb|EDP16755.1| hypothetical protein CLOBOL_02899 [Clostridium bolteae ATCC
           BAA-613]
          Length = 234

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 120/227 (52%), Gaps = 6/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M++     LE+RI Y F N++L  +ALTHSS ++ ++       ERLEFLGD +L ++ S
Sbjct: 1   MNS-HLKELEERIAYEFKNKNLFTQALTHSSYANEHRLDHSRCNERLEFLGDAVLEIVTS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +++  EG+L+    S+V   T +  A +++L  ++ +             S+ +
Sbjct: 60  EFLYRKYETLPEGDLTKIRASIVCEPTLAYCAGDIELGQYLYLGKGEDATGGRNRNSVVS 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D +E+LI A+YLDGG   A  F+ ++     ++  +   D+KT LQE   ++      Y+
Sbjct: 120 DAMEALIGAIYLDGGFANAKEFIHRFIL-NDIEHKQLFYDSKTILQEMVQSRQEAPLSYE 178

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +    GPDH+  F V  +I      +G   +K+AAEQVAA   + + 
Sbjct: 179 IIREEGPDHNKSFEVCAKIGDEEVGRGAGRTKKAAEQVAAYNGILKL 225


>gi|296104242|ref|YP_003614388.1| ribonuclease III [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295058701|gb|ADF63439.1| ribonuclease III [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 239

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 72/213 (33%), Positives = 114/213 (53%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 14  MNPIVINRLQRKLGYTFHHQELLQQALTHRSASSKH---NERLEFLGDSILSFVIANALY 70

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 71  HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 130

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 131 ALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 190

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 191 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 223


>gi|170719010|ref|YP_001784170.1| ribonuclease III [Haemophilus somnus 2336]
 gi|189043321|sp|B0USS1|RNC_HAES2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|168827139|gb|ACA32510.1| Ribonuclease III [Haemophilus somnus 2336]
          Length = 223

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 80/225 (35%), Positives = 126/225 (56%), Gaps = 6/225 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++   L+K++G+ F N   L++ALTH S +     + ERLEFLGD IL   I   L+  F
Sbjct: 1   MQLEKLQKKLGHQFTNLDYLKQALTHRSAA---AFNNERLEFLGDSILNFAIGKALYEKF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             + EGELS    +LV  +T + VAR+++L  ++++ +   K       SI +D VE+LI
Sbjct: 58  PKSNEGELSRMRATLVKEQTLAVVARQVELGDYLKLGAGELKSGGFRRESILSDCVEALI 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+YLD GI+VA   V +++++    +K G+ ++D KT LQE+        PEY+V    
Sbjct: 118 AAIYLDAGIDVALARVYQWYQELLEQIKPGEAQKDPKTRLQEFLQGHRLKLPEYEVIEIK 177

Query: 182 GPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKREGI 225
           G  H+  F V  ++  L     G   S+R AEQ AA + +++  I
Sbjct: 178 GDAHNQSFRVSCKVETLTDVVFGQGTSRRKAEQHAAQQAIEKLKI 222


>gi|195978496|ref|YP_002123740.1| ribonuclease III [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195975201|gb|ACG62727.1| ribonuclease III Rnc [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 231

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 73/229 (31%), Positives = 116/229 (50%), Gaps = 8/229 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L  + LE      F ++ LLE A TH+S ++ ++       ERLEFLGD +L L+IS
Sbjct: 2   MKKLE-ALLENSFNIRFDDKRLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIIS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  +    EG++S   +++V  E+ +  +R     ++I++     K       +I  
Sbjct: 61  EYLFAKYPKQTEGDMSKLRSTIVREESLAGFSRYCSFDAYIKLGKGEEKSGGRHRETILG 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPE 174
           D+ E+ + AL LD GIE    F+++    + ++ G F   +D KT LQE   AK  V  +
Sbjct: 121 DLFEAFLGALLLDKGIEEVRRFLNQVMIPQ-VEQGTFEKVKDYKTCLQELLQAKGDVVID 179

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           Y+V   +GP H  +F V V +     ++G   SK+ AEQ AA   L + 
Sbjct: 180 YQVISETGPAHAKQFEVAVLVDEDRLSKGTGRSKKLAEQDAAKNALAQL 228


>gi|157692273|ref|YP_001486735.1| ribonuclease III [Bacillus pumilus SAFR-032]
 gi|157681031|gb|ABV62175.1| ribonuclease III [Bacillus pumilus SAFR-032]
          Length = 247

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 105/225 (46%), Gaps = 5/225 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59
            ++   ++RI   F N  LL +A THSS  + ++    E  ERLEFLGD +L L IS  L
Sbjct: 16  EQFREFQQRISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFL 75

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F  + +  EG+L+    ++V   +   +A EL     + +             ++ ADV 
Sbjct: 76  FAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVF 135

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVT 178
           E+ I ALYLD G+E    F++ Y   +          D K++LQE+         EY++ 
Sbjct: 136 EAFIGALYLDQGLEPVERFLEAYVYPKINDGAFSHVMDFKSQLQEFVQRDGKGVLEYRIL 195

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              GP H+  F   V + G     G   SK+ AEQ AA E L + 
Sbjct: 196 HEKGPAHNREFEANVSLRGEVLGIGNGRSKKEAEQHAAQEALAKL 240


>gi|113461383|ref|YP_719452.1| ribonuclease III [Haemophilus somnus 129PT]
 gi|112823426|gb|ABI25515.1| RNAse III [Haemophilus somnus 129PT]
          Length = 227

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 80/225 (35%), Positives = 126/225 (56%), Gaps = 6/225 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++   L+K++G+ F N   L++ALTH S +     + ERLEFLGD IL   I   L+  F
Sbjct: 5   MQLEKLQKKLGHQFTNLDYLKQALTHRSAA---AFNNERLEFLGDSILNFAIGKALYEKF 61

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             + EGELS    +LV  +T + VAR+++L  ++++ +   K       SI +D VE+LI
Sbjct: 62  PKSNEGELSRMRATLVKEQTLAVVARQVELGDYLKLGAGELKSGGFRRESILSDCVEALI 121

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+YLD GI+VA   V +++++    +K G+ ++D KT LQE+        PEY+V    
Sbjct: 122 AAIYLDAGIDVALARVYQWYQELLEQIKPGEAQKDPKTRLQEFLQGHRLKLPEYEVIEIK 181

Query: 182 GPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKREGI 225
           G  H+  F V  ++  L     G   S+R AEQ AA + +++  I
Sbjct: 182 GDAHNQSFRVSCKVETLTDVVFGQGTSRRKAEQHAAQQAIEKLKI 226


>gi|309972852|gb|ADO96053.1| RNase III, dsRNA [Haemophilus influenzae R2846]
          Length = 227

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 80/226 (35%), Positives = 117/226 (51%), Gaps = 9/226 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              LE++IGY F + +LL+ ALTH S +    +  ERLEFLGD IL   I+  L++ F  
Sbjct: 4   LDRLERKIGYRFNDIALLKLALTHRSAA---TQHNERLEFLGDSILNFTIAEALYHQFPR 60

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    +LV   T + +AR+ +L  ++ + S   K+      SI AD VE++I A
Sbjct: 61  CNEGELSRMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVEAIIGA 120

Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           + LD G+ V    +  +++Q    +K G  ++DAKT LQE+   K    P Y+V    G 
Sbjct: 121 MSLDQGLAVTTQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPLPTYEVVNIQGE 180

Query: 184 DHDPRFTVVVEISG----LAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            H   FTV  ++               S+R AEQ AA ++LK   I
Sbjct: 181 AHCQIFTVECKVKSAEKIDRTFVAKGSSRRKAEQAAAEQILKELDI 226


>gi|126208025|ref|YP_001053250.1| ribonuclease III [Actinobacillus pleuropneumoniae L20]
 gi|189043287|sp|A3MZQ9|RNC_ACTP2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|126096817|gb|ABN73645.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 5b str.
           L20]
          Length = 223

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 79/223 (35%), Positives = 117/223 (52%), Gaps = 6/223 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++   L+K++ Y F N   L +ALTH S      ++ ERLEFLGD IL   I   LF  F
Sbjct: 1   MQLERLQKKLSYQFTNLDYLLQALTHRSAG---AKNNERLEFLGDSILNFAIGKALFEKF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EGELS    +LV  +T + +AR+  L  ++R+ +   K       SI +D VE++I
Sbjct: 58  PKANEGELSRMRATLVREQTLAILARQFGLGEYMRLGAGELKSGGYRRESILSDCVEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+YLD G++ A   V  +++     +K G  ++D KT LQE+   +    P Y+V    
Sbjct: 118 AAIYLDAGMDKAIEQVHLWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVLDIK 177

Query: 182 GPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           G  H+  F V  +I        G+  S+R AEQ AA +VL + 
Sbjct: 178 GEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAKL 220


>gi|16271989|ref|NP_438187.1| ribonuclease III [Haemophilus influenzae Rd KW20]
 gi|260580682|ref|ZP_05848509.1| ribonuclease III [Haemophilus influenzae RdAW]
 gi|1173093|sp|P44441|RNC_HAEIN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|1572958|gb|AAC21692.1| ribonuclease III (rnc) [Haemophilus influenzae Rd KW20]
 gi|260092744|gb|EEW76680.1| ribonuclease III [Haemophilus influenzae RdAW]
          Length = 227

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 80/226 (35%), Positives = 118/226 (52%), Gaps = 9/226 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              LE++IGY F + +LL++ALTH S +    +  ERLEFLGD IL   I+  L++ F  
Sbjct: 4   LDRLERKIGYRFNDIALLKQALTHRSAA---TQHNERLEFLGDSILNFTIAEALYHQFPR 60

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    +LV   T + +AR+ +L  ++ + S   K+      SI AD VE++I A
Sbjct: 61  CNEGELSRMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVEAIIGA 120

Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           + LD G+ V    +  +++Q    +K G  ++DAKT LQE+   K    P Y+V    G 
Sbjct: 121 MSLDQGLAVTTQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPLPTYEVVNIQGE 180

Query: 184 DHDPRFTVVVEISG----LAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            H   FTV  ++               S+R AEQ AA ++LK   I
Sbjct: 181 AHCQIFTVKCKVKSAEKIDRTFVAKGSSRRKAEQAAAEQILKELDI 226


>gi|22536887|ref|NP_687738.1| ribonuclease III [Streptococcus agalactiae 2603V/R]
 gi|22533737|gb|AAM99610.1|AE014224_13 ribonuclease III [Streptococcus agalactiae 2603V/R]
 gi|319744744|gb|EFV97086.1| ribonuclease III [Streptococcus agalactiae ATCC 13813]
          Length = 236

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 83/225 (36%), Positives = 117/225 (52%), Gaps = 6/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  LR S LEK  G  FAN+ LL+ A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 9   MKELR-SKLEKDYGIVFANQELLDTAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLIS 67

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  +    EG+LS   + +V  E+ +  +R      +I++     K       +I  
Sbjct: 68  QYLFTKYPQKAEGDLSKLRSMIVREESLAGFSRLCGFDHYIKLGKGEEKSGGRNRDTILG 127

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + AL LD G+EV   FV+K       K   +  +D KT LQE   +   V  +Y
Sbjct: 128 DLFEAFLGALLLDKGVEVVHAFVNKVMIPHVEKGTYERVKDYKTSLQELLQSHGDVKIDY 187

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +VT  SGP H   F V V ++    +QG+  SK+AAEQ AA   L
Sbjct: 188 QVTNESGPAHAKEFEVTVSVNQENLSQGIGRSKKAAEQDAAKNAL 232


>gi|289168052|ref|YP_003446321.1| ribonuclease III [Streptococcus mitis B6]
 gi|288907619|emb|CBJ22456.1| ribonuclease III [Streptococcus mitis B6]
          Length = 232

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 74/228 (32%), Positives = 114/228 (50%), Gaps = 8/228 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + L+      FA+++LLE A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MKELQ-TVLKNHFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS     +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D  E+ + AL LD  +     F+ +    + +++G+F    D KT LQE       VT  
Sbjct: 120 DAFEAFLGALLLDKDVAKVKEFIYQVMIPK-VEAGEFEMITDYKTHLQELLQVNGDVTIR 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           Y+V   +GP HD  F V V + G +  QG   SK+ AEQ AA   +++
Sbjct: 179 YQVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226


>gi|166031773|ref|ZP_02234602.1| hypothetical protein DORFOR_01474 [Dorea formicigenerans ATCC
           27755]
 gi|166028226|gb|EDR46983.1| hypothetical protein DORFOR_01474 [Dorea formicigenerans ATCC
           27755]
          Length = 233

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 78/228 (34%), Positives = 120/228 (52%), Gaps = 8/228 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
               LE RIGY F + +LL+KA++HSS  +       E  ERLEFLGD +L L+ S  LF
Sbjct: 6   NLKELEHRIGYTFQDFALLKKAMSHSSYVNEEHLPKYECNERLEFLGDAVLELVSSEFLF 65

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
               +  EGEL+    S+V     +  ARE++L  ++ +             S+ +D +E
Sbjct: 66  FEHPTTPEGELTKTRASMVCEPALAFCAREIELGEYLLLGKGEDATGGRKRESVTSDAME 125

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +LI A+Y+DGG   A  F++++  +  L++ K   D+KT LQE   A F     Y +   
Sbjct: 126 ALIGAIYVDGGFANAKEFINRFILK-DLENKKLFYDSKTILQEIVQAHFKEELSYHLVGE 184

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE---VLKREGI 225
            GPDHD  F V ++I       G   +K++AEQ AA +   +L+++ I
Sbjct: 185 EGPDHDKTFQVELQIGEQVYGIGKGRTKKSAEQEAAYKTILMLRKKNI 232


>gi|145635204|ref|ZP_01790908.1| ribonuclease III [Haemophilus influenzae PittAA]
 gi|229845360|ref|ZP_04465491.1| ribonuclease III [Haemophilus influenzae 6P18H1]
 gi|145267483|gb|EDK07483.1| ribonuclease III [Haemophilus influenzae PittAA]
 gi|229811668|gb|EEP47366.1| ribonuclease III [Haemophilus influenzae 6P18H1]
          Length = 227

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 81/226 (35%), Positives = 118/226 (52%), Gaps = 9/226 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              LE++IGY F N +LL++ALTH S +    +  ERLEFLGD IL   I+  L++ F  
Sbjct: 4   LDRLERKIGYCFNNIALLKQALTHRSAA---TQHNERLEFLGDSILNFTIAEALYHQFPR 60

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    +LV   T + +AR+ +L  ++ + S   K+      SI AD VE++I A
Sbjct: 61  CNEGELSRMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVEAIIGA 120

Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           + LD G+ V    +  +++Q    +K G  ++DAKT LQE+   K    P Y+V    G 
Sbjct: 121 MSLDQGLAVTTQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPLPTYEVVNIQGE 180

Query: 184 DHDPRFTVVVEISG----LAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            H   FTV  ++               S+R AEQ AA ++LK   I
Sbjct: 181 AHCQIFTVKCKVKSAEKIDRTFVAKGSSRRKAEQAAAEQILKELDI 226


>gi|270292630|ref|ZP_06198841.1| ribonuclease III [Streptococcus sp. M143]
 gi|270278609|gb|EFA24455.1| ribonuclease III [Streptococcus sp. M143]
          Length = 232

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 110/227 (48%), Gaps = 6/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + L+KR    FA+++LLE A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MKELQ-TVLKKRFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS     +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEY 175
           D  E+ + AL LD  +     F+ +    +      +   D KT LQE       V   Y
Sbjct: 120 DAFEAFLGALLLDKDVARVKEFIYQVMIPKVEVGDFEMITDYKTHLQELLQVNGDVDIRY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +VT   GP HD  F V V + G +  +G   SK+ AEQ AA   +++
Sbjct: 180 QVTSEMGPAHDKVFDVEVLVEGKSIGKGQGRSKKLAEQEAAKNAVEK 226


>gi|325265084|ref|ZP_08131811.1| ribonuclease III [Clostridium sp. D5]
 gi|324029774|gb|EGB91062.1| ribonuclease III [Clostridium sp. D5]
          Length = 232

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 80/226 (35%), Positives = 116/226 (51%), Gaps = 8/226 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
               LEK+IGY F + SLL +A+ HSS ++          ERLEFLGD +L L+ S  LF
Sbjct: 7   NLKELEKKIGYKFRDFSLLRRAMMHSSFTNEKHLEKYHCNERLEFLGDAVLELVSSEYLF 66

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                  EGEL+    S+V   + +  AR++DL S++ +             SI +D +E
Sbjct: 67  LESPKVSEGELTKTRASMVCEPSLAFCARDIDLGSYLLLGRGEEATGGRARDSITSDALE 126

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +LI A+YLDGG   A  F+ ++     L+  K   D+KT LQE   A+   +  Y++   
Sbjct: 127 ALIGAIYLDGGFTNAKEFIHRFILT-DLEDKKLFFDSKTILQEIVQARMAGSISYRLIKE 185

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKRE 223
            GPDH+  F V V I       G   +K+AAEQ AA +    L++E
Sbjct: 186 EGPDHNKAFFVEVMIEENGYGIGKGRTKKAAEQEAAYKAILELRKE 231


>gi|225860919|ref|YP_002742428.1| ribonuclease III [Streptococcus pneumoniae Taiwan19F-14]
 gi|298229966|ref|ZP_06963647.1| ribonuclease III [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298254343|ref|ZP_06977929.1| ribonuclease III [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298502755|ref|YP_003724695.1| ribonuclease III [Streptococcus pneumoniae TCH8431/19A]
 gi|254807906|sp|C1CR56|RNC_STRZT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|225726586|gb|ACO22437.1| ribonuclease III [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238350|gb|ADI69481.1| ribonuclease III [Streptococcus pneumoniae TCH8431/19A]
 gi|327389483|gb|EGE87828.1| ribonuclease III [Streptococcus pneumoniae GA04375]
          Length = 232

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 112/228 (49%), Gaps = 8/228 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + L+      F +++LLE A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MKELQ-TVLKNHFAIEFTDKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS     +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D  E+ + AL LD  +     F+ +    + +++G+F    D KT LQE       V   
Sbjct: 120 DAFEAFLGALLLDKDVAKVKEFIYQVMIPK-VEAGEFEMITDYKTHLQELLQVNGDVAIR 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           Y+V   +GP HD  F V V + G +  QG   SK+ AEQ AA   +++
Sbjct: 179 YQVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226


>gi|85068686|gb|ABC54695.1| ribonuclease III [Ehrlichia sp. P-Mtn]
          Length = 228

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 88/219 (40%), Positives = 130/219 (59%), Gaps = 3/219 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHF 63
           + + + IGY+F N  LL +ALTH S+S S      +YERLEFLGD +L L+IS +LFN F
Sbjct: 4   NNISEIIGYSFKNIQLLNEALTHPSVSSSKDNINFNYERLEFLGDAVLNLVISEMLFNIF 63

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG L+ +  +LV      +VA+ ++L +FI +S   R    +  +S   + +E+LI
Sbjct: 64  PKDTEGNLAKKKTALVCGTKLVEVAQFINLGTFIIMSDGERTCGGANNSSNLENALEALI 123

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            A+YLDGG++ A  F+  +WK  A       +DAKT LQEWA A+  + P Y +  +SGP
Sbjct: 124 GAIYLDGGLKAAKNFIFLFWKNSAKHMKVPPQDAKTILQEWAQAQGLLAPSYHIVNKSGP 183

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           DH+P FTV V ++     Q    +K+ AEQ AA+ +L +
Sbjct: 184 DHNPTFTVEVRMNSHETLQATGNNKKIAEQKAASLMLAK 222


>gi|146321055|ref|YP_001200766.1| dsRNA-specific ribonuclease [Streptococcus suis 98HAH33]
 gi|253751930|ref|YP_003025071.1| ribonuclease III [Streptococcus suis SC84]
 gi|253753753|ref|YP_003026894.1| ribonuclease III [Streptococcus suis P1/7]
 gi|253755369|ref|YP_003028509.1| ribonuclease III [Streptococcus suis BM407]
 gi|145691861|gb|ABP92366.1| dsRNA-specific ribonuclease [Streptococcus suis 98HAH33]
 gi|251816219|emb|CAZ51846.1| ribonuclease III [Streptococcus suis SC84]
 gi|251817833|emb|CAZ55586.1| ribonuclease III [Streptococcus suis BM407]
 gi|251819999|emb|CAR46159.1| ribonuclease III [Streptococcus suis P1/7]
 gi|292558506|gb|ADE31507.1| Ribonuclease III [Streptococcus suis GZ1]
          Length = 228

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 73/225 (32%), Positives = 107/225 (47%), Gaps = 7/225 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           ++ L    G  F++ +LLE A TH+S ++ ++       ERLEFLGD +L L+IS  L+ 
Sbjct: 5   HAKLLADFGIDFSDLNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLMISKYLYQ 64

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +    EGE+S   ++ V  E+ +  +R      F+R+     K       +I  D  E+
Sbjct: 65  KYPDRPEGEMSKLRSTFVREESLAGFSRACGFDRFLRLGKGEEKSGGRNRDTILGDAFEA 124

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179
            + AL LD G +    F+ K    R L+ G F R  D KT LQE       +   Y+V  
Sbjct: 125 FLGALLLDKGEKTVEEFIHKVMIPR-LEKGNFERVTDYKTALQEILQVNGEIAISYQVIA 183

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            SGP HD  F V V        +G   SK+ AEQ AA   ++  G
Sbjct: 184 ESGPAHDKTFEVEVSADQRVIGRGRGRSKKLAEQAAAKNAVEARG 228


>gi|240949696|ref|ZP_04754031.1| ribonuclease III [Actinobacillus minor NM305]
 gi|240295954|gb|EER46630.1| ribonuclease III [Actinobacillus minor NM305]
          Length = 223

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 120/222 (54%), Gaps = 6/222 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++   L+K++GY F     L +ALTH S +    ++ ERLEFLGD IL   I   L++ F
Sbjct: 1   MQLERLQKKLGYQFETLDYLTQALTHRSAA---SKNNERLEFLGDSILNFTIGKALYDKF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EGELS    +LV  +T + +AR+ +L  ++++ +   K       SI +D VE++I
Sbjct: 58  PKADEGELSRMRAALVREQTLAVIARQFELGEYLKLGAGELKSGGFRRESILSDCVEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+YLD G+E A   +  +++     +  G+ ++D KT LQE+   +    PEY+V    
Sbjct: 118 AAIYLDKGMEPAMERIYAWYETFLAEITPGEAQKDPKTRLQEFLQGRKLPLPEYEVIDIK 177

Query: 182 GPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKR 222
           G  H+  F V  ++ G      G   S+R AEQ  A +VL +
Sbjct: 178 GEAHNQTFKVTCKVQGIEEIFTGQGTSRRKAEQNVAEKVLTQ 219


>gi|304398620|ref|ZP_07380492.1| ribonuclease III [Pantoea sp. aB]
 gi|304353831|gb|EFM18206.1| ribonuclease III [Pantoea sp. aB]
          Length = 226

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 74/213 (34%), Positives = 115/213 (53%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F +  LL++ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPILINKLQRKLGYTFTHSELLQQALTHRSASSKH---NERLEFLGDSILSYVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD GIE     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGIFLDSGIERVEQLILDWYQSRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SG+  P  G+  S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGMAEPVVGVGSSRRK 210


>gi|307708796|ref|ZP_07645258.1| ribonuclease III [Streptococcus mitis NCTC 12261]
 gi|307615162|gb|EFN94373.1| ribonuclease III [Streptococcus mitis NCTC 12261]
          Length = 232

 Score =  258 bits (661), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 113/228 (49%), Gaps = 8/228 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + L+      FA+++LLE A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MKELQ-TVLKNHFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS     +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D  E+ + AL LD  +     F+ +    + +++G+F    D KT LQE       V   
Sbjct: 120 DAFEAFLGALLLDKDVAKVKEFIYQVMIPK-VEAGEFEMITDYKTHLQELLQVNGDVAIR 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           Y+V   +GP HD  F V V + G +  QG   SK+ AEQ AA   +++
Sbjct: 179 YQVISETGPAHDKVFEVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226


>gi|34558193|ref|NP_908008.1| ribonuclease III [Wolinella succinogenes DSM 1740]
 gi|81653364|sp|Q7M840|RNC_WOLSU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|34483912|emb|CAE10908.1| RIBONUCLEASE III [Wolinella succinogenes]
          Length = 238

 Score =  258 bits (661), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 83/220 (37%), Positives = 116/220 (52%), Gaps = 4/220 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
                 EKR+GY F N++LL +ALTH S    Y  + ERLEFLGD +L L+I   LF  F
Sbjct: 2   ESIEEFEKRLGYRFQNKNLLIEALTHKSYKKPY--NNERLEFLGDAVLDLVIGEFLFLKF 59

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EGELS    SLV+ +  +++A  + L   I +S+    +      S+ ++  E+ +
Sbjct: 60  PKADEGELSKMRASLVNEKGFAKLAERVSLGRHIFISNAEENNKGREKPSLLSNAFEATM 119

Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+YL+ G+ V    V +   +    +  G   RD KT LQE   AKFG TPEY +   S
Sbjct: 120 GAIYLETGLSVVREVVHRLLDEVYPKIDLGSLFRDYKTALQELTQAKFGETPEYVILGSS 179

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           GPDH   F V V + G   A+    SK+ A+Q AA   L+
Sbjct: 180 GPDHKKEFEVAVCVLGSEYARACGSSKKEAQQEAARIALE 219


>gi|154686009|ref|YP_001421170.1| ribonuclease III [Bacillus amyloliquefaciens FZB42]
 gi|189043290|sp|A7Z4L3|RNC_BACA2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|154351860|gb|ABS73939.1| Rnc [Bacillus amyloliquefaciens FZB42]
          Length = 249

 Score =  258 bits (661), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 107/225 (47%), Gaps = 5/225 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59
            ++   ++RI   F N  LL +A THSS  + ++    E  ERLEFLGD +L L IS  L
Sbjct: 18  EQFKEFQERISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFL 77

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F  + +  EG+L+    ++V   +   +A EL     + +             ++ ADV 
Sbjct: 78  FAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVF 137

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVT 178
           E+ I ALYLD G++    F+  Y   +          D K++LQE+       + EYK+ 
Sbjct: 138 EAFIGALYLDQGLDPVQQFLKVYVFPKINDGAFSHVMDFKSQLQEFVQRDGKGSLEYKIL 197

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              GP H+  F  +V + G A   G   SK+ AEQ AA E L + 
Sbjct: 198 NEKGPAHNREFEALVSLKGEALGIGNGRSKKEAEQHAAQEALAKM 242


>gi|254797243|ref|YP_003082085.1| ribonuclease III [Neorickettsia risticii str. Illinois]
 gi|254590493|gb|ACT69855.1| ribonuclease III [Neorickettsia risticii str. Illinois]
          Length = 222

 Score =  258 bits (661), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 78/220 (35%), Positives = 119/220 (54%), Gaps = 3/220 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +    L+  +G  F N+ LL +ALTH S+      SYERLEFLGD +L L+++++L++ F
Sbjct: 1   MELEELQSLLGVHFKNKELLVEALTHPSV--EKCPSYERLEFLGDAVLNLVVASMLYDLF 58

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG LS R + LV     + +AR+++L   IR+SS          T+   +V+E+LI
Sbjct: 59  PGDPEGRLSQRQSVLVCKTALAMLARQMNLGDCIRLSSSEEASGGRDKTNNLENVLEALI 118

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            A++LD G E    F+ K+W + A++S     + K+ LQE   AK    P Y V  RSGP
Sbjct: 119 GAIFLDAGFETVTCFIQKHWYELAVQSDSIEPNPKSALQELLQAKGMKPPVYNVIDRSGP 178

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            H P F V + + G    +    SK+  E+ AA  +L+  
Sbjct: 179 AHLPIFEVEICVDGKKR-RATGRSKKLGEENAARMMLEEL 217


>gi|58698421|ref|ZP_00373332.1| ribonuclease III [Wolbachia endosymbiont of Drosophila ananassae]
 gi|58535076|gb|EAL59164.1| ribonuclease III [Wolbachia endosymbiont of Drosophila ananassae]
          Length = 232

 Score =  258 bits (661), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 83/226 (36%), Positives = 125/226 (55%), Gaps = 5/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLIS 56
           M +L    + K I Y F N ++LE+ALTH S++    ++    YERLEFLGD +L +++S
Sbjct: 1   MKSLN-DAISKIIDYKFTNYAILEEALTHPSVNKRNSKNQIVSYERLEFLGDSVLNMVVS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  F   KEG L+ R   LV   T + VA+E+ L SFI +++  R +          
Sbjct: 60  ATLFKLFPEEKEGALAKRKTDLVCGNTIANVAKEIKLGSFIIMNNSERCNGGRCNLKNLE 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           + +E+LI A+Y+DGG+E    F+ +YW++ A       +D KT LQEW        PEY+
Sbjct: 120 NSLEALIGAIYIDGGLENVEKFIIQYWEKLAKGMLDPPQDPKTSLQEWTQKNKLPLPEYE 179

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +  ++GP H+P FT+ V I           SK+ AEQ AA  +L++
Sbjct: 180 LVKQTGPAHNPEFTISVCIEDYGKVSACASSKKIAEQKAAELMLEK 225


>gi|33152642|ref|NP_873995.1| ribonuclease III [Haemophilus ducreyi 35000HP]
 gi|73917578|sp|Q7VL75|RNC_HAEDU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|33148866|gb|AAP96384.1| ribonuclease III [Haemophilus ducreyi 35000HP]
          Length = 222

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 81/224 (36%), Positives = 121/224 (54%), Gaps = 6/224 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +    L+K+IGY FAN   L +ALTH S +    ++ ERLEFLGD IL   I   LF  F
Sbjct: 1   MYIERLQKKIGYQFANLDYLLQALTHRSAA---AKNNERLEFLGDSILNYAIGQALFERF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EGELS    +LV  +T + +AR+ DL  ++++ +   K       SI +D VE++I
Sbjct: 58  PQANEGELSRMRATLVREQTLAILARQFDLGEYMKLGAGELKSGGYRRESILSDCVEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+YLD G++ A   +  +++     +K G  ++D KT LQE+   +    PEY+V    
Sbjct: 118 AAIYLDAGMDKASERIYAWYQTLLDEMKPGDAQKDPKTRLQEFLQGRRLKLPEYEVLDIK 177

Query: 182 GPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKREG 224
           G  H+  F V  +I        G+  S+R AEQ AA ++L +  
Sbjct: 178 GEAHNQIFKVSCKIETFTDIFIGIGTSRRKAEQNAAEQILLKLN 221


>gi|319774962|ref|YP_004137450.1| Ribonuclease III [Haemophilus influenzae F3047]
 gi|329123136|ref|ZP_08251706.1| ribonuclease III [Haemophilus aegyptius ATCC 11116]
 gi|317449553|emb|CBY85758.1| Ribonuclease III [Haemophilus influenzae F3047]
 gi|327471691|gb|EGF17133.1| ribonuclease III [Haemophilus aegyptius ATCC 11116]
          Length = 227

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 81/226 (35%), Positives = 118/226 (52%), Gaps = 9/226 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              LE++IGY F +  LL++ALTH S +    +  ERLEFLGD IL   I+  L++ F  
Sbjct: 4   LDRLERKIGYCFNDIVLLKQALTHRSAA---TQHNERLEFLGDSILNFTIAEALYHQFPR 60

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    +LV   T + +AR+ +L  ++ + S   K+      SI AD VE++I A
Sbjct: 61  CNEGELSRMRATLVRESTLAILARQFELGDYMSLGSGELKNGGFRRESILADCVEAIIGA 120

Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           + LD G+ V    +  +++Q    +K G  ++DAKT LQE+   K    P Y+V    G 
Sbjct: 121 MSLDQGLAVTTQVIRNWYQQLLAEIKPGDNQKDAKTRLQEYLQGKHLPLPTYEVINIQGE 180

Query: 184 DHDPRFTVVVEIS--GL--APAQGMDCSKRAAEQVAAAEVLKREGI 225
            H   FTV  ++   G           S+R AEQ AA ++LK   I
Sbjct: 181 AHCQIFTVKCKVKSAGKIDRTFVAKGSSRRKAEQAAAEQILKELDI 226


>gi|332653520|ref|ZP_08419265.1| ribonuclease III [Ruminococcaceae bacterium D16]
 gi|332518666|gb|EGJ48269.1| ribonuclease III [Ruminococcaceae bacterium D16]
          Length = 226

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 83/206 (40%), Positives = 119/206 (57%), Gaps = 3/206 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHF 63
           +TLE+++GY F NR LLE ALTHSS ++  +   +S ERLEFLGD ILG++++  L+   
Sbjct: 2   TTLEEKLGYQFQNRELLENALTHSSCANESRGKLQSNERLEFLGDSILGMVVADHLYRGH 61

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EGEL+    +LV  E+  +VA+ LDL S++ +             SIQAD VE+++
Sbjct: 62  PDLPEGELTRVRAALVCEESLVEVAQALDLGSYLLLGKGEEAGGGRTRPSIQADAVEAVL 121

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           AA+YLDGGI  A   + KY   R ++     RD KT LQE    + G   +Y++    GP
Sbjct: 122 AAVYLDGGIGSARKIIQKYILCREIEGITSPRDYKTALQELVQRESGQVLKYRLVGSQGP 181

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKR 209
           DH  RF V V+++G     G   SK+
Sbjct: 182 DHAKRFFVDVDLNGEPVGSGEGHSKK 207


>gi|311898536|dbj|BAJ30944.1| putative ribonuclease 3 [Kitasatospora setae KM-6054]
          Length = 269

 Score =  258 bits (660), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 82/224 (36%), Positives = 119/224 (53%), Gaps = 6/224 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           ++  Y  LE R+GY+   R+LL +ALTH S ++      + ERLEFLGD +LGL+++  L
Sbjct: 24  ASTEYDVLEGRLGYSLE-RALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 82

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +       EG L+    ++V++   ++V R LDL +FIR+            +SI AD V
Sbjct: 83  YRLHPEVAEGTLAKLRAAVVNSRALAEVGRGLDLGAFIRLGKGEEGTGGRDKSSILADTV 142

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177
           E++I A YLD G++ A  FV + +     +S +     D KT LQE   A     PEY V
Sbjct: 143 EAVIGATYLDQGLDAATEFVHRLFDPLIAESAQLGAGLDWKTSLQELTAAVGLGVPEYVV 202

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           T  SGPDH+  FT    ++G     G   SK+ AEQ AA    +
Sbjct: 203 T-ESGPDHEKTFTAAARVAGQDHGSGSGRSKKEAEQKAAESAWR 245


>gi|157960865|ref|YP_001500899.1| ribonuclease III [Shewanella pealeana ATCC 700345]
 gi|189043351|sp|A8H1C7|RNC_SHEPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|157845865|gb|ABV86364.1| Ribonuclease III [Shewanella pealeana ATCC 700345]
          Length = 225

 Score =  258 bits (660), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 79/224 (35%), Positives = 122/224 (54%), Gaps = 6/224 (2%)

Query: 1   MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  ++    L + +GY F  ++ L++ALTH S S+ +    ERLEFLGD IL ++IS  L
Sbjct: 1   MEPIKNIPRLCRTLGYEFNEKAFLDQALTHRSASNKH---NERLEFLGDSILSIVISDAL 57

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           ++ F +A EG+LS    +LV  +  +++A E  L  ++++     K       SI AD V
Sbjct: 58  YHQFPAATEGDLSRMRATLVCGKMLAEIAIEFKLGDYLKLGPGELKSGGFRRESILADAV 117

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           E++I A+YLD  IE     V  +++ R  +     ++D KT LQE+        P Y+V 
Sbjct: 118 EAIIGAIYLDSDIENCRQLVLNWYESRLKVIEPINQKDPKTLLQEYLQKYRKPLPVYRVA 177

Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLK 221
              G  H+  FTV   +  L+ A  G+  S+R AEQ AAA+VL+
Sbjct: 178 HTEGDAHEQTFTVECIVEDLSQAVVGVASSRRKAEQSAAAQVLE 221


>gi|94502127|ref|ZP_01308628.1| ribonuclease III [Oceanobacter sp. RED65]
 gi|94425729|gb|EAT10736.1| ribonuclease III [Oceanobacter sp. RED65]
          Length = 226

 Score =  258 bits (660), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 81/223 (36%), Positives = 116/223 (52%), Gaps = 6/223 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            L +RIGY F + S  E ALTH S      ++ ERLEFLGD I+  +++  LF  F  AK
Sbjct: 7   KLSQRIGYTFNDISFFELALTHRS---KGGKNNERLEFLGDSIVNFVVAEALFEKFPQAK 63

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG+LS     LV   T +++AR+ DL  F+ + S   K       SI AD VE++I A+Y
Sbjct: 64  EGKLSRLRAGLVRGTTLAELARDFDLGEFLLLGSGELKSGGFNRESILADAVEAIIGAIY 123

Query: 128 LDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           LD G++     +  ++ +R   L+     +DAKT LQE         P+Y+V   +G  H
Sbjct: 124 LDSGLDTVRERILTWYGKRLDDLQLDDVVKDAKTRLQEHLQKNQSRLPKYEVMEITGQAH 183

Query: 186 DPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           D  F V   +  L     G+  S+R AEQ AA + L   G+ +
Sbjct: 184 DQNFKVSCWVETLPEVTIGLGSSRRLAEQSAAQKALNALGVES 226


>gi|257870561|ref|ZP_05650214.1| ribonuclease III [Enterococcus gallinarum EG2]
 gi|257804725|gb|EEV33547.1| ribonuclease III [Enterococcus gallinarum EG2]
          Length = 230

 Score =  258 bits (660), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 103/225 (45%), Gaps = 5/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M+    + L++  G  F +  LLE+A THSS  + ++       ERLEFLGD +L L++S
Sbjct: 1   MNTQLMNELKEDYGIVFHDVDLLEQAFTHSSYVNEHRNLHLSDNERLEFLGDAVLELIVS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+       EG+L+    ++V  ++ S  A++     +IR+             S+  
Sbjct: 61  RYLYRELPDLPEGKLTKLRAAIVREDSLSMFAKDCRFDQYIRLGKGEENSGGRKRPSLLC 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + ALYLD G+E    F+      +          D KT LQE       V+  Y
Sbjct: 121 DLFEAFLGALYLDQGLESVDGFLTAVVFPKVKAGAFSHEMDHKTRLQEVLQRSGDVSINY 180

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           ++T   GP H+  F   V    +   +G   SK+ +EQ AA   L
Sbjct: 181 RLTKEEGPAHERIFWTEVYCDDVLIGEGQGKSKKLSEQAAAENAL 225


>gi|242309254|ref|ZP_04808409.1| ribonuclease 3 [Helicobacter pullorum MIT 98-5489]
 gi|239524295|gb|EEQ64161.1| ribonuclease 3 [Helicobacter pullorum MIT 98-5489]
          Length = 224

 Score =  258 bits (660), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 77/220 (35%), Positives = 117/220 (53%), Gaps = 4/220 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           + ++  ++ +GY F N++LL++ALTH S   S     ERLEFLGD +L L+I   L+  F
Sbjct: 1   MDFNHFQQTLGYHFKNQNLLKEALTHKSAKKST--HNERLEFLGDAVLDLIIGEFLYKKF 58

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            S+ EGELS    S+V+ +  +++AR L +  ++ +S    ++      SI ++  E++I
Sbjct: 59  PSSPEGELSKMRASMVNEKAFAKIARYLGIGEYLFISHSEEQNHGRDKDSILSNAFEAII 118

Query: 124 AALYLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+YL+ G+E     V K  +     +       D KT LQE   A FGV PEY V    
Sbjct: 119 GAIYLESGLEKVQKIVLKILEILYPKIDIQHLFYDHKTSLQELTQALFGVIPEYVVLDSK 178

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           GPDH+  F + V I G   A     SK+ A+Q  A   L+
Sbjct: 179 GPDHNKEFLIGVFIQGKEYAHASGKSKKEAQQNCAKIALE 218


>gi|168493169|ref|ZP_02717312.1| ribonuclease III [Streptococcus pneumoniae CDC3059-06]
 gi|183576640|gb|EDT97168.1| ribonuclease III [Streptococcus pneumoniae CDC3059-06]
          Length = 232

 Score =  258 bits (660), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 112/228 (49%), Gaps = 8/228 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + L+      F +++LLE A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MKELQ-TVLKNHFAIEFTDKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS     +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D  E+ + AL LD  +     F+ +    + +++G+F    D KT LQE       V   
Sbjct: 120 DAFEAFLGALLLDKDVAKVKEFIYQVMIPK-VEAGEFEMITDYKTYLQELLQVNGDVAIR 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           Y+V   +GP HD  F V V + G +  QG   SK+ AEQ AA   +++
Sbjct: 179 YQVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226


>gi|259907677|ref|YP_002648033.1| ribonuclease III [Erwinia pyrifoliae Ep1/96]
 gi|224963299|emb|CAX54784.1| Ribonuclease III [Erwinia pyrifoliae Ep1/96]
 gi|283477528|emb|CAY73444.1| RNase III, ds RNA [Erwinia pyrifoliae DSM 12163]
 gi|310764815|gb|ADP09765.1| ribonuclease III [Erwinia sp. Ejp617]
          Length = 226

 Score =  258 bits (660), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 73/213 (34%), Positives = 113/213 (53%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINKLQRKLGYTFTHQELLQQALTHRSASSKH---NERLEFLGDSILSYVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  QRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  ++  R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSDIQTVEQLILSWYASRLDQISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRA 210
              G  HD  FT+  ++SG+A P  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGMADPVVGTGSSRRK 210


>gi|260598950|ref|YP_003211521.1| ribonuclease III [Cronobacter turicensis z3032]
 gi|260218127|emb|CBA32925.1| Ribonuclease 3 [Cronobacter turicensis z3032]
          Length = 236

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 72/213 (33%), Positives = 114/213 (53%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 11  MNPIVINRLQRKLGYTFHHQDLLQQALTHRSASSKH---NERLEFLGDSILSFVIANALY 67

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 68  HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 127

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 128 ALIGGIFLDSDIQTVERLILTWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 187

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 188 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 220


>gi|308173556|ref|YP_003920261.1| ribonuclease III [Bacillus amyloliquefaciens DSM 7]
 gi|307606420|emb|CBI42791.1| ribonuclease III [Bacillus amyloliquefaciens DSM 7]
 gi|328553511|gb|AEB24003.1| ribonuclease III [Bacillus amyloliquefaciens TA208]
 gi|328911697|gb|AEB63293.1| ribonuclease III [Bacillus amyloliquefaciens LL3]
          Length = 249

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 107/225 (47%), Gaps = 5/225 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59
            ++   ++RI   F N  LL +A THSS  + ++    E  ERLEFLGD +L L IS  L
Sbjct: 18  EQFKEFQERISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFL 77

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F  + +  EG+L+    ++V   +   +A EL     + +             ++ ADV 
Sbjct: 78  FAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVF 137

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVT 178
           E+ I ALYLD G+E    F+  Y   +          D K++LQE+       + EYK+ 
Sbjct: 138 EAFIGALYLDQGLEPVQQFLKVYVFPKINDGAFSHVMDFKSQLQEFVQRDGKGSLEYKIL 197

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              GP H+  F  +V + G A   G   SK+ AEQ AA E L + 
Sbjct: 198 NEKGPAHNREFEALVSLKGEALGIGNGRSKKEAEQHAAQEALAKL 242


>gi|72161055|ref|YP_288712.1| ribonuclease III [Thermobifida fusca YX]
 gi|90101652|sp|Q47S78|RNC_THEFY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|71914787|gb|AAZ54689.1| RNAse III [Thermobifida fusca YX]
          Length = 240

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 73/225 (32%), Positives = 111/225 (49%), Gaps = 6/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58
           +S       ++ +G   A   +L +ALTH S ++      + ERLEFLGD +LGL+++  
Sbjct: 5   LSPAEVREFQETVGVEIA-PDILTRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDT 63

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L+       EG+L+    ++V+    + VAREL +  ++R+            +SI AD 
Sbjct: 64  LYRTHPDLSEGQLAKLRAAVVNMRALADVARELGIGRYVRLGRGEEATGGRDKSSILADT 123

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYK 176
           +E+LI A+YLD G++ A   V + +     ++       D KT LQE   A+    PEY 
Sbjct: 124 LEALIGAVYLDRGLDEASELVHRLFDPLIARASGLGAGLDWKTSLQELTAAELLGVPEY- 182

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           V   SGPDH   F   V ++G     G   SK+ AEQ AA    K
Sbjct: 183 VVEESGPDHQKTFRATVRVAGQTYGSGEGRSKKEAEQQAAESAWK 227


>gi|117924215|ref|YP_864832.1| ribonuclease III [Magnetococcus sp. MC-1]
 gi|189043326|sp|A0L633|RNC_MAGSM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|117607971|gb|ABK43426.1| RNAse III [Magnetococcus sp. MC-1]
          Length = 246

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 79/235 (33%), Positives = 115/235 (48%), Gaps = 14/235 (5%)

Query: 1   MSALR----YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--------SYERLEFLGD 48
           M+A R       LE+ + Y F    LL+ ALTH S      +          ERLEFLGD
Sbjct: 1   MNAQREPSGLERLEQALDYRFTQSDLLQLALTHRSAPLDGSKAGEVVATTHNERLEFLGD 60

Query: 49  RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108
            +L L++S  L+  F    EG+LS     LV+  + S+VA++L+L  ++R+     K   
Sbjct: 61  SVLNLIVSHRLYKRFGEVPEGQLSQWRAMLVNTRSLSEVAKDLELGRYLRMGRGEAKSGG 120

Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAH 166
               SI  + +E+L+ A+YLDGG E A   VD+ +  +   ++  +  +D KT LQE+  
Sbjct: 121 REKYSILGNALEALLGAIYLDGGFEAAERVVDRLFAHQVAGIEPEQQGKDYKTLLQEYLQ 180

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           A+    P Y V    GP H+  F V           G   SKR AEQ AA + L+
Sbjct: 181 ARGEALPIYAVLSAEGPPHERVFVVSCHPREQLCGHGQGRSKREAEQHAAQQALE 235


>gi|148993857|ref|ZP_01823259.1| ribonuclease III [Streptococcus pneumoniae SP9-BS68]
 gi|149007089|ref|ZP_01830758.1| ribonuclease III [Streptococcus pneumoniae SP18-BS74]
 gi|149012300|ref|ZP_01833369.1| ribonuclease III [Streptococcus pneumoniae SP19-BS75]
 gi|149019239|ref|ZP_01834601.1| ribonuclease III [Streptococcus pneumoniae SP23-BS72]
 gi|168486568|ref|ZP_02711076.1| ribonuclease III [Streptococcus pneumoniae CDC1087-00]
 gi|168489075|ref|ZP_02713274.1| ribonuclease III [Streptococcus pneumoniae SP195]
 gi|182684025|ref|YP_001835772.1| ribonuclease III [Streptococcus pneumoniae CGSP14]
 gi|225854713|ref|YP_002736225.1| ribonuclease III [Streptococcus pneumoniae JJA]
 gi|225859042|ref|YP_002740552.1| ribonuclease III [Streptococcus pneumoniae 70585]
 gi|303254257|ref|ZP_07340366.1| ribonuclease III [Streptococcus pneumoniae BS455]
 gi|303258883|ref|ZP_07344862.1| ribonuclease III [Streptococcus pneumoniae SP-BS293]
 gi|303261566|ref|ZP_07347513.1| ribonuclease III [Streptococcus pneumoniae SP14-BS292]
 gi|303264237|ref|ZP_07350157.1| ribonuclease III [Streptococcus pneumoniae BS397]
 gi|303266132|ref|ZP_07352025.1| ribonuclease III [Streptococcus pneumoniae BS457]
 gi|303268141|ref|ZP_07353941.1| ribonuclease III [Streptococcus pneumoniae BS458]
 gi|307127162|ref|YP_003879193.1| ribonuclease III [Streptococcus pneumoniae 670-6B]
 gi|238691158|sp|B2IPN5|RNC_STRPS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807901|sp|C1C7M6|RNC_STRP7 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807904|sp|C1CEK4|RNC_STRZJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|147761393|gb|EDK68359.1| ribonuclease III [Streptococcus pneumoniae SP18-BS74]
 gi|147763626|gb|EDK70561.1| ribonuclease III [Streptococcus pneumoniae SP19-BS75]
 gi|147927682|gb|EDK78707.1| ribonuclease III [Streptococcus pneumoniae SP9-BS68]
 gi|147931109|gb|EDK82088.1| ribonuclease III [Streptococcus pneumoniae SP23-BS72]
 gi|182629359|gb|ACB90307.1| ribonuclease III [Streptococcus pneumoniae CGSP14]
 gi|183570477|gb|EDT91005.1| ribonuclease III [Streptococcus pneumoniae CDC1087-00]
 gi|183572564|gb|EDT93092.1| ribonuclease III [Streptococcus pneumoniae SP195]
 gi|225722013|gb|ACO17867.1| ribonuclease III [Streptococcus pneumoniae 70585]
 gi|225722854|gb|ACO18707.1| ribonuclease III [Streptococcus pneumoniae JJA]
 gi|301801897|emb|CBW34621.1| ribonuclease III [Streptococcus pneumoniae INV200]
 gi|302598751|gb|EFL65788.1| ribonuclease III [Streptococcus pneumoniae BS455]
 gi|302637146|gb|EFL67634.1| ribonuclease III [Streptococcus pneumoniae SP14-BS292]
 gi|302639826|gb|EFL70282.1| ribonuclease III [Streptococcus pneumoniae SP-BS293]
 gi|302642358|gb|EFL72705.1| ribonuclease III [Streptococcus pneumoniae BS458]
 gi|302644302|gb|EFL74556.1| ribonuclease III [Streptococcus pneumoniae BS457]
 gi|302646049|gb|EFL76276.1| ribonuclease III [Streptococcus pneumoniae BS397]
 gi|306484224|gb|ADM91093.1| ribonuclease III [Streptococcus pneumoniae 670-6B]
 gi|332073586|gb|EGI84065.1| ribonuclease III [Streptococcus pneumoniae GA17570]
 gi|332074581|gb|EGI85055.1| ribonuclease III [Streptococcus pneumoniae GA17545]
          Length = 232

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 111/228 (48%), Gaps = 8/228 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + L+      F ++ LLE A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MKELQ-TVLKNHFAIEFTDKKLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS     +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D  E+ + AL LD  +     F+ +    + +++G+F    D KT LQE       V   
Sbjct: 120 DAFEAFLGALLLDKDVAKVKEFIYQVMIPK-VEAGEFEMITDYKTHLQELLQVNGDVAIR 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           Y+V   +GP HD  F V V + G +  QG   SK+ AEQ AA   +++
Sbjct: 179 YQVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226


>gi|212636523|ref|YP_002313048.1| ribonuclease III [Shewanella piezotolerans WP3]
 gi|226735379|sp|B8CQJ5|RNC_SHEPW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|212558007|gb|ACJ30461.1| Ribonuclease III [Shewanella piezotolerans WP3]
          Length = 225

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 82/224 (36%), Positives = 120/224 (53%), Gaps = 6/224 (2%)

Query: 1   MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  ++    L + +GY FA ++LL++ALTH S S+ +    ERLEFLGD IL ++IS  L
Sbjct: 1   MEPIKNIPRLCRTLGYEFAEQALLDQALTHRSASNKH---NERLEFLGDSILSIVISDAL 57

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           ++ F  A EG+LS    +LV  +  +++A E  L  ++++     K       SI AD V
Sbjct: 58  YHQFPKATEGDLSRMRATLVCGKMLAEIAIEFKLGDYLKLGPGELKSGGFRRESILADAV 117

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           E++I A+YLD  IE     V  ++  R  +     ++D KT LQE         P YKV 
Sbjct: 118 EAIIGAIYLDSDIEKCRKLVLNWYASRLRVIEPINQKDPKTLLQEHLQKFRKPLPIYKVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLK 221
              G  H+  FTV   +  L  A  G+  S+R AEQ AAA+VL+
Sbjct: 178 HTEGDAHEQTFTVECVVEDLRQAVVGVASSRRKAEQSAAAQVLE 221


>gi|116748321|ref|YP_845008.1| ribonuclease III [Syntrophobacter fumaroxidans MPOB]
 gi|189043370|sp|A0LGM1|RNC_SYNFM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|116697385|gb|ABK16573.1| RNAse III [Syntrophobacter fumaroxidans MPOB]
          Length = 242

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 117/226 (51%), Gaps = 10/226 (4%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLFN 61
              L+  +GY F +  LL +AL H S  H      ++  E LEFLGD +LGL IS  L  
Sbjct: 7   LEALQNLLGYRFGDEGLLHRALVHRSYLHENPHLDEKDNETLEFLGDAVLGLAISHFLLE 66

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F    EGELS   +++V+    +++A EL+L  ++ +             S+ AD +E+
Sbjct: 67  QFPDYNEGELSRLRSAIVNERELTRIAVELNLGEYLLLGKGEEMTGGRRKASLLADSLEA 126

Query: 122 LIAALYLDGGIEVAGTFVDKY------WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
           L+A++YLDGG++     + K       +++R        +D KT+LQE   A++ +TP Y
Sbjct: 127 LLASIYLDGGLDAVLGVIKKLFDVYLRFEKREHVLKALDKDYKTQLQELTQARYKLTPVY 186

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            +    GPDHD  F + V + G   A G   SK+ A+Q AA + L+
Sbjct: 187 VLDREEGPDHDKTFHMNVVLEGQVLAGGSGKSKKDAQQAAAEKALQ 232


>gi|329297705|ref|ZP_08255041.1| ribonuclease III [Plautia stali symbiont]
          Length = 226

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 72/213 (33%), Positives = 115/213 (53%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F +  LL++ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPILINKLQRKLGYTFTHPELLQQALTHRSASSKH---NERLEFLGDSILSYVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+ S   K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEMAREFELGECLRLGSGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGIFLDSNIQTVEKLILDWYQNRLEQISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SG+  P  G+  S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGMAEPVVGVGSSRRK 210


>gi|303251584|ref|ZP_07337758.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|302649582|gb|EFL79764.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
          Length = 223

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 117/223 (52%), Gaps = 6/223 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++   L+K++ Y F N   L +ALTH S      ++ ERLEFLGD IL   I   LF  F
Sbjct: 1   MQLERLQKKLSYQFTNLDYLLQALTHRSAG---AKNNERLEFLGDSILNFAIGKALFEKF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EGELS    +LV  +T + +AR+  L  ++++ +   K       SI +D VE++I
Sbjct: 58  PKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+YLD G++ A   V  +++     +K G  ++D KT LQE+   +    P Y+V    
Sbjct: 118 AAIYLDAGMDKAIAQVHLWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVLDIK 177

Query: 182 GPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           G  H+  F V  +I        G+  S+R AEQ AA +VL + 
Sbjct: 178 GEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAKL 220


>gi|303252175|ref|ZP_07338343.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|302648958|gb|EFL79146.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
          Length = 223

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 117/223 (52%), Gaps = 6/223 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++   L+K++ Y F N   L +ALTH S      ++ ERLEFLGD IL   I   LF  F
Sbjct: 1   MQLERLQKKLSYQFTNLDYLLQALTHRSAG---AKNNERLEFLGDSILNFAIGKALFEKF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EGELS    +LV  +T + +AR+  L  ++++ +   K       SI +D VE++I
Sbjct: 58  PKANEGELSRMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+YLD G++ A   V  +++     +K G  ++D KT LQE+   +    P Y+V    
Sbjct: 118 AAIYLDAGMDKAIEQVHLWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVLDIK 177

Query: 182 GPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           G  H+  F V  +I        G+  S+R AEQ AA +VL + 
Sbjct: 178 GEAHNQTFKVTCKIEMLEEIFIGIGTSRRKAEQNAAEQVLAKL 220


>gi|322376803|ref|ZP_08051296.1| ribonuclease III [Streptococcus sp. M334]
 gi|321282610|gb|EFX59617.1| ribonuclease III [Streptococcus sp. M334]
          Length = 232

 Score =  258 bits (659), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 113/228 (49%), Gaps = 8/228 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + L+      FA+++LLE A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MKELQ-TVLKNHFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS     +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D  E+ + AL LD  +     F+ +    + +++G+F    D KT LQE       V   
Sbjct: 120 DAFEAFLGALLLDKDVAKVKKFIYQVMIPK-VEAGEFEMITDYKTHLQELLQVNGDVAIR 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           Y+V   +GP HD  F V V + G +  QG   SK+ AEQ AA   +++
Sbjct: 179 YQVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226


>gi|311068114|ref|YP_003973037.1| ribonuclease III [Bacillus atrophaeus 1942]
 gi|310868631|gb|ADP32106.1| ribonuclease III [Bacillus atrophaeus 1942]
          Length = 249

 Score =  258 bits (659), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 73/225 (32%), Positives = 108/225 (48%), Gaps = 5/225 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59
            ++   ++RI   F N  LL +A THSS  + ++    E  ERLEFLGD +L L IS  L
Sbjct: 18  EQFKEFQERISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFL 77

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F  + +  EG+L+    ++V   +   +A EL     + +             ++ ADV 
Sbjct: 78  FAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVF 137

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVT 178
           E+ I ALYLD G+E   +F+  Y   +          D K++LQE+       T EYK+ 
Sbjct: 138 EAFIGALYLDQGLEPVESFLKVYVFPKINDGAFSHVMDFKSQLQEFVQRDGKGTLEYKIQ 197

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              GP H+  F  +V + G A   G   SK+ AEQ AA E L + 
Sbjct: 198 NEKGPAHNREFEAIVSLKGEALGIGNGRSKKEAEQHAAQEALAKL 242


>gi|169833544|ref|YP_001694678.1| ribonuclease III [Streptococcus pneumoniae Hungary19A-6]
 gi|221231942|ref|YP_002511094.1| ribonuclease III [Streptococcus pneumoniae ATCC 700669]
 gi|307706718|ref|ZP_07643523.1| ribonuclease III [Streptococcus mitis SK321]
 gi|307709493|ref|ZP_07645950.1| ribonuclease III [Streptococcus mitis SK564]
 gi|238688328|sp|B1IC43|RNC_STRPI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807902|sp|B8ZJR8|RNC_STRPJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|168996046|gb|ACA36658.1| ribonuclease III [Streptococcus pneumoniae Hungary19A-6]
 gi|220674402|emb|CAR68952.1| ribonuclease III [Streptococcus pneumoniae ATCC 700669]
 gi|301794330|emb|CBW36755.1| ribonuclease III [Streptococcus pneumoniae INV104]
 gi|301800168|emb|CBW32773.1| ribonuclease III [Streptococcus pneumoniae OXC141]
 gi|307617803|gb|EFN96965.1| ribonuclease III [Streptococcus mitis SK321]
 gi|307619807|gb|EFN98926.1| ribonuclease III [Streptococcus mitis SK564]
 gi|332203096|gb|EGJ17164.1| ribonuclease III [Streptococcus pneumoniae GA47901]
          Length = 232

 Score =  258 bits (659), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 113/228 (49%), Gaps = 8/228 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + L+      FA+++LLE A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MKELQ-TVLKNHFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS     +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D  E+ + AL LD  +     F+ +    + +++G+F    D KT LQE       V   
Sbjct: 120 DAFEAFLGALLLDKDVAKVKEFIYQVMIPK-VEAGEFEMITDYKTHLQELLQVNGDVAIR 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           Y+V   +GP HD  F V V + G +  QG   SK+ AEQ AA   +++
Sbjct: 179 YQVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226


>gi|90101637|sp|Q3IDL2|RNC_PSEHT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
          Length = 225

 Score =  258 bits (659), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 78/219 (35%), Positives = 116/219 (52%), Gaps = 5/219 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             + L K I Y FA++ LLE+A+TH S      +  ERLEFLGD IL  +I+  L+  F 
Sbjct: 4   NVTELYKTIDYIFADQGLLEQAMTHRS---HKGQHNERLEFLGDSILSFVIANALYAKFP 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            A+EG+LS   ++LV  +T ++   E  L  ++R+     K       S  AD VE++I 
Sbjct: 61  KAREGDLSRMRSTLVRGQTLAEFGLEFGLGDYLRLGPGELKSGGFRRESTLADAVEAIIG 120

Query: 125 ALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A++LD  IE  G  +  ++++R  A+  G  ++D KT LQE   A+    P Y V    G
Sbjct: 121 AVFLDSDIERCGELILSWYEERLNAISPGLNQKDPKTLLQEHLQARKLSLPGYTVVDTKG 180

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             H+  FTV   + G+     +  S+R AEQ AA + LK
Sbjct: 181 QAHNQTFTVECIVDGMDSIISVGSSRRKAEQKAAEKALK 219


>gi|194014593|ref|ZP_03053210.1| ribonuclease III [Bacillus pumilus ATCC 7061]
 gi|194013619|gb|EDW23184.1| ribonuclease III [Bacillus pumilus ATCC 7061]
          Length = 247

 Score =  258 bits (659), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 104/225 (46%), Gaps = 5/225 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59
            ++   ++RI   F N  LL +A THSS  + ++    E  ERLEFLGD +L L IS  L
Sbjct: 16  EQFREFQQRISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFL 75

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F  + +  EG+L+    ++V   +   +A EL     + +             ++ ADV 
Sbjct: 76  FAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVF 135

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVT 178
           E+ I ALYLD G+E    F++ Y   +          D K++LQE+         EY + 
Sbjct: 136 EAFIGALYLDQGLEPVERFLEAYVYPKINDGAFSHVMDFKSQLQEFVQRDGKGVLEYHIL 195

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              GP H+  F   V + G     G   SK+ AEQ AA E L + 
Sbjct: 196 HEKGPAHNREFEANVSLRGEVLGIGNGRSKKEAEQHAAQEALAKL 240


>gi|225870877|ref|YP_002746824.1| ribonuclease III [Streptococcus equi subsp. equi 4047]
 gi|254807900|sp|C0M8Y3|RNC_STRE4 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|225700281|emb|CAW94534.1| ribonuclease III [Streptococcus equi subsp. equi 4047]
          Length = 230

 Score =  258 bits (659), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 73/229 (31%), Positives = 116/229 (50%), Gaps = 8/229 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L  + LE      F ++ LLE A TH+S ++ ++       ERLEFLGD +L L+IS
Sbjct: 1   MKKLE-ALLENSFNIRFDDKRLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  +    EG++S   +++V  E+ +  +R     ++I++     K       +I  
Sbjct: 60  EYLFAKYPKQTEGDMSKLRSTIVREESLAGFSRYCSFDAYIKLGRGEEKSGGRHRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPE 174
           D+ E+ + AL LD GIE    F+++    + ++ G F   +D KT LQE   AK  V  +
Sbjct: 120 DLFEAFLGALLLDKGIEEVRRFLNQVMIPQ-VEQGTFEKVKDYKTCLQELLQAKGDVVID 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           Y+V   +GP H  +F V V +     ++G   SK+ AEQ AA   L + 
Sbjct: 179 YQVISETGPAHAKQFEVAVLVGEDHLSKGTGRSKKLAEQDAAKNALAQL 227


>gi|254439178|ref|ZP_05052672.1| ribonuclease III [Octadecabacter antarcticus 307]
 gi|198254624|gb|EDY78938.1| ribonuclease III [Octadecabacter antarcticus 307]
          Length = 229

 Score =  258 bits (659), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 91/217 (41%), Positives = 124/217 (57%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
               + RIG+ FA    L +A+THSS+S   ++  +RLEFLGDR+LGL++S  L     +
Sbjct: 7   LREFQDRIGHTFAKPDQLIRAVTHSSMSSPNRDDNQRLEFLGDRVLGLVMSEALLQADVN 66

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A EG L+ RFN+LV  ETC+ VARE+DL + +++             ++ AD +E++IAA
Sbjct: 67  APEGLLAPRFNALVRKETCADVAREIDLGAVLKLGRSEMLTGGRRKEALLADAMEAVIAA 126

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           +Y+D G +VA   V   W  R     K  RD KT LQEWA  +    P Y  T RSGPDH
Sbjct: 127 VYIDAGFDVARERVVALWGDRITNVEKDARDPKTALQEWAQGQGEPPPSYIETARSGPDH 186

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            P FT+ V +       G   SKR AEQ AA  +L+R
Sbjct: 187 APIFTIEVRLQSGPTDIGQAPSKRQAEQAAAKSLLER 223


>gi|260775208|ref|ZP_05884106.1| ribonuclease III [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608909|gb|EEX35071.1| ribonuclease III [Vibrio coralliilyticus ATCC BAA-450]
          Length = 225

 Score =  258 bits (659), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 76/213 (35%), Positives = 117/213 (54%), Gaps = 7/213 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M++   + LEK++GY F +  L+  ALTH S    + +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNS-PIAKLEKKLGYQFNDAELINLALTHRSA---HGKHNERLEFLGDSILSFVIADDLY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ RE +L   +++     K       SI AD VE
Sbjct: 57  HRFPKVNEGDMSRMRATLVRGNTLAELGREFELGDHLKLGPGELKSGGFRRDSILADAVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD  IEV    +  ++KQR  A++ G  ++D KT LQE+   +    P Y VT
Sbjct: 117 AIIGAIYLDSDIEVVRGIILSWYKQRLEAIQPGVSQKDPKTRLQEFLQGRRKPLPVYTVT 176

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRA 210
              G  H+ +FTV  E++G+  P  G   S+R 
Sbjct: 177 NIKGEAHNQQFTVSCEVAGVGSPVIGKGTSRRK 209


>gi|262273710|ref|ZP_06051523.1| ribonuclease III [Grimontia hollisae CIP 101886]
 gi|262222125|gb|EEY73437.1| ribonuclease III [Grimontia hollisae CIP 101886]
          Length = 224

 Score =  258 bits (659), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 75/207 (36%), Positives = 115/207 (55%), Gaps = 6/207 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L++RIGY F + +LL  ALTH S S ++    ERLEFLGD IL  +++  L++ F + 
Sbjct: 6   NRLQRRIGYTFNDTTLLSLALTHRSASGNH---NERLEFLGDSILSFVVADDLYHRFPNV 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG++S    +LV   T +++ RE +L   +++     K       SI AD VE++I A+
Sbjct: 63  DEGDMSRMRATLVRGNTLAELGREFELGDVLQLGPGELKSGGFRRDSILADAVEAIIGAI 122

Query: 127 YLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD  +E     V  ++KQR   ++ G  ++D KT LQE+   +    P Y VT   G  
Sbjct: 123 YLDSSLETVRGIVLNWYKQRLETIQPGANQKDPKTRLQEFLQGRRKPLPAYNVTKVQGEA 182

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRA 210
           H+ +FTV  E++GL  P  G   S+R 
Sbjct: 183 HNQQFTVECEVAGLDRPVVGKGSSRRK 209


>gi|291539668|emb|CBL12779.1| RNAse III [Roseburia intestinalis XB6B4]
          Length = 228

 Score =  258 bits (659), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 69/209 (33%), Positives = 106/209 (50%), Gaps = 5/209 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           +   L+ RIGY F    LL +ALTHSS ++          ERLEFLGD +L ++ S  L+
Sbjct: 3   KLQELQNRIGYTFEKEGLLRQALTHSSYANEKHMKKHSDNERLEFLGDAVLEIVSSDFLY 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            ++    EG+L+    S+V   T +   RE+DL  ++ +     +       SI +D +E
Sbjct: 63  RNYPDLPEGDLTKLRASIVCEPTLALCTREMDLGDYLLLGKGENQTGGRKRKSILSDALE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           S+I A+YLDGG E A  F+ K+     ++  K   D+KT LQE     +  +  Y++   
Sbjct: 123 SVIGAIYLDGGFEPAKKFIHKFILT-DIEHKKLFYDSKTILQEVVQGNYKESLHYELISE 181

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            GPDHD +F+V   I       G   +K+
Sbjct: 182 EGPDHDKQFSVEARIGDKVIGSGTGHTKK 210


>gi|224418414|ref|ZP_03656420.1| ribonuclease III [Helicobacter canadensis MIT 98-5491]
 gi|253827732|ref|ZP_04870617.1| ribonuclease III [Helicobacter canadensis MIT 98-5491]
 gi|313141944|ref|ZP_07804137.1| ribonuclease III [Helicobacter canadensis MIT 98-5491]
 gi|253511138|gb|EES89797.1| ribonuclease III [Helicobacter canadensis MIT 98-5491]
 gi|313130975|gb|EFR48592.1| ribonuclease III [Helicobacter canadensis MIT 98-5491]
          Length = 224

 Score =  257 bits (658), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 77/220 (35%), Positives = 117/220 (53%), Gaps = 4/220 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +     ++ +GY F+N++LL++ALTH S   S     ERLEFLGD +L L+I   L+  F
Sbjct: 1   MDLKDFQQYLGYHFSNQNLLQEALTHKSAKKST--HNERLEFLGDAVLDLIIGEFLYKKF 58

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             + EGELS    S+V+ +  +++AR L++  ++ +S    ++      SI ++  E+++
Sbjct: 59  PHSPEGELSKMRASMVNEKAFAKIARYLNIGEYLYISHSEEQNNGREKDSILSNAFEAIV 118

Query: 124 AALYLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+YL+ G+E   T V K        +       D KT LQE   A FG+TPEY V    
Sbjct: 119 GAIYLESGLEKVQTIVLKILDILYPKIDLENLFYDYKTSLQELTQALFGITPEYVVLDSK 178

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           GPDH+  F + V I     AQ    SK+ A+Q  A   LK
Sbjct: 179 GPDHNKEFLMGVFIQNKEYAQAKGKSKKEAQQNCAKIALK 218


>gi|16765901|ref|NP_461516.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29140810|ref|NP_804152.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|56412543|ref|YP_149618.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197361478|ref|YP_002141114.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|205353677|ref|YP_002227478.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207857988|ref|YP_002244639.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|20141650|sp|Q56056|RNC_SALTY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|81360707|sp|Q5PIG5|RNC_SALPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226741376|sp|B5QTU8|RNC_SALEP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226741377|sp|B5RD49|RNC_SALG2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|238689916|sp|B5BAT0|RNC_SALPK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|16421128|gb|AAL21475.1| RNase III, ds RNA [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29136435|gb|AAO68001.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|56126800|gb|AAV76306.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197092954|emb|CAR58384.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|205273458|emb|CAR38435.1| Ribonuclease III [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|206709791|emb|CAR34143.1| Ribonuclease III [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|261247776|emb|CBG25604.1| RNase III [Salmonella enterica subsp. enterica serovar Typhimurium
           str. D23580]
 gi|267994707|gb|ACY89592.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301159129|emb|CBW18643.1| Ribonuclease III [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|332989508|gb|AEF08491.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 226

 Score =  257 bits (658), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 74/213 (34%), Positives = 114/213 (53%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKH---NERLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  ++K R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 210


>gi|313890255|ref|ZP_07823889.1| ribonuclease III [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121360|gb|EFR44465.1| ribonuclease III [Streptococcus pseudoporcinus SPIN 20026]
          Length = 230

 Score =  257 bits (658), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 119/228 (52%), Gaps = 6/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + L++     F ++ LLE A TH+S ++ ++       ERLEFLGD +L L+IS
Sbjct: 1   MKKLK-ALLKETFNIVFNDQDLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  + S  EG+LS   + +V  E+ +  +R     ++I++     K       +I  
Sbjct: 60  EYLFKKYPSKPEGDLSKLRSMIVREESLAGFSRFCSFDTYIKLGKGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + AL LD GIE    F+++    +  K   +  +D KT LQE   AK  V  +Y
Sbjct: 120 DLFEAFLGALLLDKGIEDVRLFLNQVMIPQVEKGNFEKVKDYKTSLQEVLQAKGDVQIDY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +V   SGP H  +F V + ++    ++G+  SK+ AEQ AA + L+  
Sbjct: 180 QVVKESGPAHAKQFEVAILVNQEIISRGIGKSKKIAEQNAAKKALEHL 227


>gi|110801795|ref|YP_699005.1| ribonuclease III [Clostridium perfringens SM101]
 gi|110682296|gb|ABG85666.1| ribonuclease III [Clostridium perfringens SM101]
          Length = 241

 Score =  257 bits (658), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 82/225 (36%), Positives = 121/225 (53%), Gaps = 4/225 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61
           +    +EK IG  F N+ +L  ALTHSS ++ ++  +  ERLEFLGD +L L ++  LFN
Sbjct: 8   INLIEVEKLIGIEFENKGVLITALTHSSYANQFKDVKYNERLEFLGDSVLQLCVTKYLFN 67

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           ++    EGEL+     +V   +  +V++ L L  +IR+S           TSIQAD +E+
Sbjct: 68  NYKDKSEGELTKIRALVVCENSLHKVSKNLSLGKYIRMSKGEELTGGRERTSIQADALEA 127

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           +IAA+YLD GIEVA  F+ + +K    K+   +   D KT LQE       V   Y +  
Sbjct: 128 VIAAVYLDKGIEVANDFILRNFKDVIDKAINEEIILDFKTRLQEVLQKNGEVNIVYNLVK 187

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             GP H  +F   + I+     QG+  SK+ +EQ AA   L+R G
Sbjct: 188 HEGPPHRRKFFTDLLINNEVMGQGVGFSKKESEQNAAKAALQRLG 232


>gi|257093153|ref|YP_003166794.1| Ribonuclease III [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257045677|gb|ACV34865.1| Ribonuclease III [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 223

 Score =  257 bits (658), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 85/221 (38%), Positives = 118/221 (53%), Gaps = 6/221 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S LE+ +GY F +R+LL+ ALTH S S  +    ERLEFLGD IL  +I+  LF  F + 
Sbjct: 4   SRLERGLGYTFRDRALLQTALTHRSYSSPH---NERLEFLGDAILNAVIARSLFERFPTL 60

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+LS     LV  +   Q A  L L  F+R+    +K       SI AD +E+L  AL
Sbjct: 61  PEGDLSRLRAQLVRQDGLHQQALALSLGDFLRLGEGEQKSGGQQRPSILADGLEALFGAL 120

Query: 127 YLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           +LD G E AG  +++ ++   + L  G+  +DAKT LQE+   +    P+Y +T   G  
Sbjct: 121 WLDAGFEAAGEVINRLYESMLKQLIPGQGTKDAKTRLQEYLQGRRLALPQYALTGAEGEA 180

Query: 185 HDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREG 224
           H   FTV   I  L    +G   ++RAAEQ+AA   L   G
Sbjct: 181 HAQHFTVTCVIDALRIRTEGSGSNRRAAEQIAAERALDTLG 221


>gi|312897519|ref|ZP_07756939.1| ribonuclease III [Megasphaera micronuciformis F0359]
 gi|310621371|gb|EFQ04911.1| ribonuclease III [Megasphaera micronuciformis F0359]
          Length = 238

 Score =  257 bits (658), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 65/234 (27%), Positives = 110/234 (47%), Gaps = 10/234 (4%)

Query: 1   MSALRYSTLE---KRIGY-AFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILG 52
           M+  R   L    KR+    F +  LL++ALTHSS ++     +    ERLEFLGD +L 
Sbjct: 1   MNKARREQLRNFTKRLNIGPFTDWHLLDQALTHSSYTNEDKTHHSMHNERLEFLGDAVLD 60

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
           +++   L+  +    EG L+    S+VS E  + V     +  ++R+             
Sbjct: 61  MVVGEYLYRRYPDMPEGNLTKARASIVSEEPLACVCAGFHMGDYLRLGKGEALTGGRTRN 120

Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFG 170
           SI AD  E+++ A+Y+D     A  F+    ++  + ++ G + +D KT  QE       
Sbjct: 121 SIMADAFEAVVGAIYMDCSYSAARDFILTQLERYLQLVEKGIYGKDYKTYFQELLQRDGA 180

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              +Y +    GPDH+  F + V ++G     G   +K++AEQ AA   L++  
Sbjct: 181 QDIKYHLCHEEGPDHNKTFFMEVIVNGTTMGMGSGKTKKSAEQHAAYAALEKMN 234


>gi|160892686|ref|ZP_02073476.1| hypothetical protein CLOL250_00216 [Clostridium sp. L2-50]
 gi|156865727|gb|EDO59158.1| hypothetical protein CLOL250_00216 [Clostridium sp. L2-50]
          Length = 230

 Score =  257 bits (658), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 79/232 (34%), Positives = 122/232 (52%), Gaps = 10/232 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M+  R+  +E  IGY F +  LL  ALTH S ++  +    ESYER EFLGD IL  ++S
Sbjct: 1   MNTERFHNIEDIIGYTFRDLDLLVTALTHKSYANERKINKVESYERSEFLGDAILEFVVS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+ ++    EG+L+    SLV   T SQ+++EL    ++ +S            SI  
Sbjct: 61  EYLYQNYPEYPEGKLTKLRASLVCEFTLSQISKELKFGHYVLLSKGEDLTGGRNRNSIMC 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D+ E+++ A+YLDGG++ A  FV ++     +++     DAK+ LQE A  +      Y 
Sbjct: 121 DLFEAVLGAIYLDGGLDEAKKFVHRFLLD-DVETHSLFYDAKSTLQELAQKEEKTL-TYA 178

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL----KREG 224
           +    GPDH+  +   V I+G   A G   S++A+EQ AA   L    K++G
Sbjct: 179 LLEEKGPDHNKSYVSEVCINGEHVATGEGASRKASEQTAAYNALLQIKKKQG 230


>gi|188533138|ref|YP_001906935.1| ribonuclease III [Erwinia tasmaniensis Et1/99]
 gi|238691985|sp|B2VI46|RNC_ERWT9 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|188028180|emb|CAO96038.1| Ribonuclease III [Erwinia tasmaniensis Et1/99]
          Length = 226

 Score =  257 bits (658), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 72/213 (33%), Positives = 112/213 (52%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINKLQRKLGYTFTHQELLQQALTHRSASSKH---NERLEFLGDSILSYVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  QRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGYRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  ++  R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSDIQAVEQLILSWYASRLDQISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SG+  P  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGMAEPVVGTGSSRRK 210


>gi|307704936|ref|ZP_07641827.1| ribonuclease III [Streptococcus mitis SK597]
 gi|307621550|gb|EFO00596.1| ribonuclease III [Streptococcus mitis SK597]
          Length = 232

 Score =  257 bits (658), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 113/228 (49%), Gaps = 8/228 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + L+      FA+++LLE A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MKELQ-TVLKNHFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS     +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D  E+ + AL LD  +     F+ +    + +++G+F    D KT LQE       V   
Sbjct: 120 DAFEAFLGALLLDKDVVKVKEFIYQVMIPK-VEAGEFEMITDYKTHLQELLQVNGDVAIR 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           Y+V   +GP HD  F V V + G +  QG   SK+ AEQ AA   +++
Sbjct: 179 YQVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226


>gi|299536778|ref|ZP_07050086.1| ribonuclease 3 [Lysinibacillus fusiformis ZC1]
 gi|298727790|gb|EFI68357.1| ribonuclease 3 [Lysinibacillus fusiformis ZC1]
          Length = 254

 Score =  257 bits (658), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 64/222 (28%), Positives = 105/222 (47%), Gaps = 5/222 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60
           ++  L+  +   F N++LL +A THSS  + ++       ERLEFLGD +L L +S  LF
Sbjct: 22  QFELLQHELNITFINKNLLYQAFTHSSYVNEHRRKLFTDNERLEFLGDAVLELSVSKYLF 81

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             + +  EGEL+    S+V   +    A EL    F+ +             ++ ADV E
Sbjct: 82  EKYPNMSEGELTKLRASIVCEPSLVIFANELGFGRFVLLGKGEELTGGRERPALLADVFE 141

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           S + ALYLD  ++   +F+++    +  + +     D K++LQE           Y++  
Sbjct: 142 SFVGALYLDQDLQTVVSFLERVVFPKVEVGAFSHVMDFKSQLQEMVQQTNNGLLHYEIID 201

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             GP H+  F   V ++G     G   SK+ AEQ AA   ++
Sbjct: 202 EKGPAHNRTFVSSVLLNGQELGIGRGKSKKEAEQQAAQCAMR 243


>gi|320155320|ref|YP_004187699.1| ribonuclease III [Vibrio vulnificus MO6-24/O]
 gi|56749444|sp|Q7MHN8|RNC_VIBVY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|319930632|gb|ADV85496.1| ribonuclease III [Vibrio vulnificus MO6-24/O]
          Length = 225

 Score =  257 bits (658), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 74/213 (34%), Positives = 112/213 (52%), Gaps = 7/213 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M++     L +++GY F +  LL  ALTH S +  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNS-PIEKLTRQLGYQFQDDELLNLALTHRSANSKH---NERLEFLGDSILSFVIADELY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ RE  L  ++++     K       SI AD VE
Sbjct: 57  HRFPKVNEGDMSRMRATLVRGNTLAELGREFGLGDYLKLGPGELKSGGFRRDSILADAVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD  +EV    V  ++  R  A+K G  ++D KT LQE+   +    P Y VT
Sbjct: 117 AIIGAVYLDSDLEVVRGIVLNWYASRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVT 176

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  H+  FTV  +I+G+  P  G   S+R 
Sbjct: 177 NIKGEAHNQEFTVECDIAGMDKPVVGRGTSRRK 209


>gi|283786183|ref|YP_003366048.1| Ribonuclease III [Citrobacter rodentium ICC168]
 gi|282949637|emb|CBG89256.1| Ribonuclease III [Citrobacter rodentium ICC168]
          Length = 226

 Score =  257 bits (658), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 73/213 (34%), Positives = 114/213 (53%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFTHQELLQQALTHRSASSKH---NERLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGYRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 210


>gi|261416404|ref|YP_003250087.1| ribonuclease III [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261372860|gb|ACX75605.1| ribonuclease III [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302326232|gb|ADL25433.1| ribonuclease III [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 270

 Score =  257 bits (658), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 77/219 (35%), Positives = 120/219 (54%), Gaps = 6/219 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           LE ++GY F +  LL  AL H S        Y  + ERLEFLGD +L +L +  L+  + 
Sbjct: 23  LEAKLGYRFRDPELLAHALVHRSFLVGKDVPYASNNERLEFLGDSVLNMLTTEFLYRTYP 82

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           S  EGELS R +++VS   C+Q ++E DL+ ++++     K       SI AD  E+++ 
Sbjct: 83  SDPEGELSKRKSAIVSGHACAQSSKEWDLSEYVKIGKSEAKMGGRGKESILADAYEAVLG 142

Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YLDGG+E     ++K+   R   + S     + K+EL E+   K   +PEY +    G
Sbjct: 143 AVYLDGGLEEVRAILNKFHFPRVQEIISATDFVNYKSELLEFCQGKLRCSPEYVIVGEEG 202

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           P+H   FTV V ++G + A+G   +K+ AEQ A+   L+
Sbjct: 203 PEHQKVFTVEVVVNGKSYARGQGPNKKKAEQEASRLSLE 241


>gi|317049180|ref|YP_004116828.1| ribonuclease III [Pantoea sp. At-9b]
 gi|316950797|gb|ADU70272.1| ribonuclease III [Pantoea sp. At-9b]
          Length = 226

 Score =  257 bits (657), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 72/213 (33%), Positives = 114/213 (53%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F +  LL++ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPILINKLQRKLGYTFTHPELLQQALTHRSASSKH---NERLEFLGDSILSYVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGIFLDSNIQNVEKLILDWYQTRLEQISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SG+  P  G+  S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGMAEPVVGVGSSRRK 210


>gi|161761286|ref|YP_033345.2| ribonuclease III [Bartonella henselae str. Houston-1]
          Length = 246

 Score =  257 bits (657), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 117/226 (51%), Positives = 155/226 (68%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M       LEK  G+ F ++  L+KALTHSS+  S Q +YERLEFLGDR+LGLLI+ +L+
Sbjct: 12  MKLPMIDQLEKLTGHYFKDKKKLKKALTHSSVQGSEQGNYERLEFLGDRVLGLLIAEMLY 71

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELSVR NSLV+A+TC+ +A E++L   I V  +++      +T++ ADV+E
Sbjct: 72  QLFPQASEGELSVRLNSLVNAQTCADIALEMELPVMIHVGFEMKNLKGRRLTNMYADVIE 131

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +LIA +YLDGG+E    F+ +YW+ RA +    RRDAKT+LQEWAH + GV P Y+V  R
Sbjct: 132 ALIAVIYLDGGLESVRPFIQRYWQSRAKQMDAGRRDAKTQLQEWAHVQGGVQPHYRVVKR 191

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           SGPDHDP F V V I G A   G   SKR AE++AA ++L+REGIW
Sbjct: 192 SGPDHDPVFMVEVSIPGFASEIGQGNSKRCAERMAAEKILRREGIW 237


>gi|77919004|ref|YP_356819.1| RNase III [Pelobacter carbinolicus DSM 2380]
 gi|90101632|sp|Q3A4Q8|RNC_PELCD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|77545087|gb|ABA88649.1| RNAse III [Pelobacter carbinolicus DSM 2380]
          Length = 232

 Score =  257 bits (657), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 118/227 (51%), Gaps = 6/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           + A   + LE  I Y F N++LL +ALTH S S+   +      ERLEFLGD +LG+++S
Sbjct: 2   LEAKSAALLEDTIDYVFDNQALLLEALTHKSFSNEQNDRTEPDNERLEFLGDAVLGVVVS 61

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             +F  F    EGEL+   + +VS +  + + + + L  ++R+     +      +S+ A
Sbjct: 62  HYIFRTFPHLPEGELTRIRSEVVSEKGLTVIGKAICLGDYMRLGKGEERSGGRQKSSLLA 121

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPE 174
           + +E+L+ A++ DGG +     ++  +     ++   K   D KT LQE   A+FG  P+
Sbjct: 122 NTMEALLGAVFCDGGFDSVRRVIEALFIPHIQRAARRKTGVDYKTRLQERLQARFGDVPQ 181

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           Y +    GP H   ++V     G    QG   SK++AEQ AA + L+
Sbjct: 182 YVLIHADGPPHQRSYSVEAHFRGSCIGQGQGRSKKSAEQAAAKQALE 228


>gi|27364934|ref|NP_760462.1| ribonuclease III [Vibrio vulnificus CMCP6]
 gi|31076872|sp|Q8DC76|RNC_VIBVU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|27361080|gb|AAO09989.1| ribonuclease III [Vibrio vulnificus CMCP6]
          Length = 225

 Score =  257 bits (657), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 74/213 (34%), Positives = 112/213 (52%), Gaps = 7/213 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M++     L +++GY F +  LL  ALTH S +  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNS-PIEKLTRQLGYQFQDDELLNLALTHRSANSKH---NERLEFLGDSILSFVIADELY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ RE  L  ++++     K       SI AD VE
Sbjct: 57  HRFPKVNEGDMSRMRATLVRGNTLAELGREFGLGDYLKLGPGELKSGGFRRDSILADAVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD  +EV    V  ++  R  A+K G  ++D KT LQE+   +    P Y VT
Sbjct: 117 AIIGAVYLDSDLEVVRGIVLNWYTSRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVT 176

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  H+  FTV  +I+G+  P  G   S+R 
Sbjct: 177 NIKGEAHNQEFTVECDIAGMDKPVVGRGTSRRK 209


>gi|222475478|ref|YP_002563895.1| ribonuclease III (rnc) [Anaplasma marginale str. Florida]
 gi|254995287|ref|ZP_05277477.1| ribonuclease III [Anaplasma marginale str. Mississippi]
 gi|255003466|ref|ZP_05278430.1| ribonuclease III [Anaplasma marginale str. Puerto Rico]
 gi|254807234|sp|B9KGT5|RNC_ANAMF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|222419616|gb|ACM49639.1| ribonuclease III (rnc) [Anaplasma marginale str. Florida]
          Length = 232

 Score =  257 bits (657), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 79/216 (36%), Positives = 114/216 (52%), Gaps = 1/216 (0%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            + +  GY F +  LL +ALTH S+S+    +YERLEFLGD +L + +S +L+  F    
Sbjct: 12  KIYEATGYQFRDLDLLLEALTHPSLSYKSAANYERLEFLGDAVLSMTVSEMLYRLFPDDD 71

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG L+ +  +LV      ++AR + L   I +S   R    S       + +E+LI A+Y
Sbjct: 72  EGCLTRKRTALVRGSEVVEIARSIGLGELILMSGGERTCGGSDNPGTLENALEALIGAMY 131

Query: 128 LDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           +DGG E   +F+ K+W  RA        +D KT LQEW   +    P YK+  +SGP+H 
Sbjct: 132 MDGGPEAYRSFIHKHWLARAQHMSYTPPQDPKTALQEWVQGRGWAMPLYKLVSKSGPEHK 191

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           P F V V I       G   SK+ AEQ AA  +LK+
Sbjct: 192 PVFAVEVSIQEHGNVLGTGSSKKLAEQEAAKLMLKK 227


>gi|160947505|ref|ZP_02094672.1| hypothetical protein PEPMIC_01439 [Parvimonas micra ATCC 33270]
 gi|158446639|gb|EDP23634.1| hypothetical protein PEPMIC_01439 [Parvimonas micra ATCC 33270]
          Length = 237

 Score =  257 bits (657), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 74/225 (32%), Positives = 110/225 (48%), Gaps = 6/225 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNH 62
            + L + +GY F +  LL  A  H S  +  ++   S ERLEFLGD ILG ++S  L+  
Sbjct: 10  LNELMEVLGYKFKDLELLNLAFVHRSYLNECKDATISNERLEFLGDVILGFIVSVELYEQ 69

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F ++ EG L+   + +V  E+ S  AR  +L  ++ +             SI AD  E+L
Sbjct: 70  FPNSDEGYLTKIRSKVVCEESFSYAARTFNLGKYLLLGKGEDSFGGRNRNSILADTFEAL 129

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA---LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
             ALYLDGG++V     +KY+       +    F +D K+ LQE+ H        Y +  
Sbjct: 130 FGALYLDGGMDVVTEIANKYFFDTVVYKIDKNIFIKDYKSYLQEYFHKNATTKISYTLVA 189

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             GPDHD  F + V I  +    G   +K+ AEQ AA + L + G
Sbjct: 190 ERGPDHDKEFDMCVNIDDVVKGYGTGKNKKQAEQQAARDALIKSG 234


>gi|148256032|ref|YP_001240617.1| ribonuclease III [Bradyrhizobium sp. BTAi1]
 gi|146408205|gb|ABQ36711.1| RNAse III [Bradyrhizobium sp. BTAi1]
          Length = 368

 Score =  257 bits (657), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 99/217 (45%), Positives = 137/217 (63%), Gaps = 3/217 (1%)

Query: 12  RIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           RIG+ FA+ SLL  A+TH S    S    +SY+RLEFLGD +LGL++S +L+  F SA E
Sbjct: 145 RIGHHFADPSLLSTAVTHVSALKSSKKRGDSYQRLEFLGDHVLGLIVSDMLYRSFPSADE 204

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELS R   LV  E+C+ VA+ L L   I++ +           S+  DV E++I A++L
Sbjct: 205 GELSKRLADLVRKESCADVAKSLGLLDDIKLGAVGAGAGARLRKSVLGDVCEAVIGAIFL 264

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           DGG   A  FV++ W +R  K  +  RD KT LQEWA  K   TP Y+   R+GP HDP+
Sbjct: 265 DGGYAAAAGFVERNWTERMHKPRRPLRDPKTVLQEWAQGKGLPTPVYREVERTGPHHDPQ 324

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           F V V++ GL  A+G+  SKRAAE+VAA+ +++REG+
Sbjct: 325 FRVAVDLPGLESAEGVGGSKRAAEKVAASVMIEREGV 361


>gi|295097900|emb|CBK86990.1| RNAse III [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 226

 Score =  257 bits (657), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 72/213 (33%), Positives = 114/213 (53%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFHHQELLQQALTHRSASSKH---NERLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 210


>gi|15803093|ref|NP_289124.1| ribonuclease III [Escherichia coli O157:H7 EDL933]
 gi|15832687|ref|NP_311460.1| ribonuclease III [Escherichia coli O157:H7 str. Sakai]
 gi|16130492|ref|NP_417062.1| RNase III [Escherichia coli str. K-12 substr. MG1655]
 gi|24113909|ref|NP_708419.1| ribonuclease III [Shigella flexneri 2a str. 301]
 gi|26248932|ref|NP_754972.1| ribonuclease III [Escherichia coli CFT073]
 gi|30063969|ref|NP_838140.1| ribonuclease III [Shigella flexneri 2a str. 2457T]
 gi|74313129|ref|YP_311548.1| ribonuclease III [Shigella sonnei Ss046]
 gi|82545019|ref|YP_408966.1| ribonuclease III [Shigella boydii Sb227]
 gi|82777993|ref|YP_404342.1| ribonuclease III [Shigella dysenteriae Sd197]
 gi|89109373|ref|AP_003153.1| RNase III [Escherichia coli str. K-12 substr. W3110]
 gi|91211893|ref|YP_541879.1| ribonuclease III [Escherichia coli UTI89]
 gi|110642729|ref|YP_670459.1| ribonuclease III [Escherichia coli 536]
 gi|110806512|ref|YP_690032.1| ribonuclease III [Shigella flexneri 5 str. 8401]
 gi|117624788|ref|YP_853701.1| ribonuclease III [Escherichia coli APEC O1]
 gi|157157389|ref|YP_001463890.1| ribonuclease III [Escherichia coli E24377A]
 gi|157162046|ref|YP_001459364.1| ribonuclease III [Escherichia coli HS]
 gi|168748363|ref|ZP_02773385.1| ribonuclease III [Escherichia coli O157:H7 str. EC4113]
 gi|168761188|ref|ZP_02786195.1| ribonuclease III [Escherichia coli O157:H7 str. EC4501]
 gi|168778544|ref|ZP_02803551.1| ribonuclease III [Escherichia coli O157:H7 str. EC4076]
 gi|168787927|ref|ZP_02812934.1| ribonuclease III [Escherichia coli O157:H7 str. EC869]
 gi|170019150|ref|YP_001724104.1| ribonuclease III [Escherichia coli ATCC 8739]
 gi|170082176|ref|YP_001731496.1| RNase III [Escherichia coli str. K-12 substr. DH10B]
 gi|170680897|ref|YP_001744756.1| ribonuclease III [Escherichia coli SMS-3-5]
 gi|170767161|ref|ZP_02901614.1| ribonuclease III [Escherichia albertii TW07627]
 gi|187732795|ref|YP_001881346.1| ribonuclease III [Shigella boydii CDC 3083-94]
 gi|187775820|ref|ZP_02992726.1| ribonuclease III [Escherichia coli O157:H7 str. EC4196]
 gi|188492722|ref|ZP_02999992.1| ribonuclease III [Escherichia coli 53638]
 gi|189402493|ref|ZP_03006738.1| ribonuclease III [Escherichia coli O157:H7 str. EC4401]
 gi|189403151|ref|ZP_03006973.1| ribonuclease III [Escherichia coli O157:H7 str. EC4486]
 gi|189405744|ref|ZP_02823956.2| ribonuclease III [Escherichia coli O157:H7 str. EC508]
 gi|191167987|ref|ZP_03029789.1| ribonuclease III [Escherichia coli B7A]
 gi|191174016|ref|ZP_03035533.1| ribonuclease III [Escherichia coli F11]
 gi|193064102|ref|ZP_03045187.1| ribonuclease III [Escherichia coli E22]
 gi|193068346|ref|ZP_03049309.1| ribonuclease III [Escherichia coli E110019]
 gi|194429263|ref|ZP_03061790.1| ribonuclease III [Escherichia coli B171]
 gi|194432095|ref|ZP_03064384.1| ribonuclease III [Shigella dysenteriae 1012]
 gi|194437570|ref|ZP_03069666.1| ribonuclease III [Escherichia coli 101-1]
 gi|195936714|ref|ZP_03082096.1| ribonuclease III [Escherichia coli O157:H7 str. EC4024]
 gi|208807620|ref|ZP_03249957.1| ribonuclease III [Escherichia coli O157:H7 str. EC4206]
 gi|208811958|ref|ZP_03253287.1| ribonuclease III [Escherichia coli O157:H7 str. EC4045]
 gi|208820348|ref|ZP_03260668.1| ribonuclease III [Escherichia coli O157:H7 str. EC4042]
 gi|209400787|ref|YP_002272042.1| ribonuclease III [Escherichia coli O157:H7 str. EC4115]
 gi|209920046|ref|YP_002294130.1| ribonuclease III [Escherichia coli SE11]
 gi|215487911|ref|YP_002330342.1| ribonuclease III [Escherichia coli O127:H6 str. E2348/69]
 gi|217327524|ref|ZP_03443607.1| ribonuclease III [Escherichia coli O157:H7 str. TW14588]
 gi|218547905|ref|YP_002381696.1| ribonuclease III [Escherichia fergusonii ATCC 35469]
 gi|218555148|ref|YP_002388061.1| ribonuclease III [Escherichia coli IAI1]
 gi|218559488|ref|YP_002392401.1| ribonuclease III [Escherichia coli S88]
 gi|218690683|ref|YP_002398895.1| ribonuclease III [Escherichia coli ED1a]
 gi|218696195|ref|YP_002403862.1| ribonuclease III [Escherichia coli 55989]
 gi|218701081|ref|YP_002408710.1| ribonuclease III [Escherichia coli IAI39]
 gi|218706071|ref|YP_002413590.1| ribonuclease III [Escherichia coli UMN026]
 gi|237705077|ref|ZP_04535558.1| ribonuclease III [Escherichia sp. 3_2_53FAA]
 gi|238901732|ref|YP_002927528.1| RNase III [Escherichia coli BW2952]
 gi|253772534|ref|YP_003035365.1| ribonuclease III [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254162542|ref|YP_003045650.1| ribonuclease III [Escherichia coli B str. REL606]
 gi|254794517|ref|YP_003079354.1| ribonuclease III [Escherichia coli O157:H7 str. TW14359]
 gi|256017284|ref|ZP_05431149.1| ribonuclease III [Shigella sp. D9]
 gi|256021747|ref|ZP_05435612.1| ribonuclease III [Escherichia sp. 4_1_40B]
 gi|260845252|ref|YP_003223030.1| RNase III [Escherichia coli O103:H2 str. 12009]
 gi|260856661|ref|YP_003230552.1| RNase III [Escherichia coli O26:H11 str. 11368]
 gi|260869254|ref|YP_003235656.1| RNase III [Escherichia coli O111:H- str. 11128]
 gi|261222997|ref|ZP_05937278.1| RNase III [Escherichia coli O157:H7 str. FRIK2000]
 gi|261259452|ref|ZP_05951985.1| RNase III [Escherichia coli O157:H7 str. FRIK966]
 gi|291283842|ref|YP_003500660.1| Ribonuclease 3 [Escherichia coli O55:H7 str. CB9615]
 gi|297516306|ref|ZP_06934692.1| ribonuclease III [Escherichia coli OP50]
 gi|307139203|ref|ZP_07498559.1| ribonuclease III [Escherichia coli H736]
 gi|307313862|ref|ZP_07593478.1| ribonuclease III [Escherichia coli W]
 gi|309784618|ref|ZP_07679253.1| ribonuclease III [Shigella dysenteriae 1617]
 gi|312965483|ref|ZP_07779715.1| ribonuclease III [Escherichia coli 2362-75]
 gi|312973187|ref|ZP_07787359.1| ribonuclease III [Escherichia coli 1827-70]
 gi|331643191|ref|ZP_08344326.1| ribonuclease III [Escherichia coli H736]
 gi|331648313|ref|ZP_08349402.1| ribonuclease III [Escherichia coli M605]
 gi|331654029|ref|ZP_08355030.1| ribonuclease III [Escherichia coli M718]
 gi|331658711|ref|ZP_08359655.1| ribonuclease III [Escherichia coli TA206]
 gi|331664135|ref|ZP_08365045.1| ribonuclease III [Escherichia coli TA143]
 gi|331669317|ref|ZP_08370165.1| ribonuclease III [Escherichia coli TA271]
 gi|331674016|ref|ZP_08374779.1| ribonuclease III [Escherichia coli TA280]
 gi|331678563|ref|ZP_08379238.1| ribonuclease III [Escherichia coli H591]
 gi|331684217|ref|ZP_08384813.1| ribonuclease III [Escherichia coli H299]
 gi|332278275|ref|ZP_08390688.1| ribonuclease III [Shigella sp. D9]
 gi|67472282|sp|P0A7Y0|RNC_ECOLI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|67472283|sp|P0A7Y1|RNC_ECOL6 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|67472284|sp|P0A7Y2|RNC_ECO57 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|67472285|sp|P0A7Y3|RNC_SHIFL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|90101643|sp|Q31XS0|RNC_SHIBS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|90101644|sp|Q32CV4|RNC_SHIDS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|90101645|sp|Q3YYU9|RNC_SHISS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|122422869|sp|Q1R8G6|RNC_ECOUT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|122958122|sp|Q0TES1|RNC_ECOL5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|123048003|sp|Q0T1T8|RNC_SHIF8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043309|sp|A7ZQ11|RNC_ECO24 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043310|sp|A8A377|RNC_ECOHS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043311|sp|A1AE97|RNC_ECOK1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043312|sp|B1IVR0|RNC_ECOLC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226735371|sp|B7MIQ2|RNC_ECO45 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226735372|sp|B7NRM0|RNC_ECO7I RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226735373|sp|B7M8I0|RNC_ECO8A RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226735374|sp|B7N6F5|RNC_ECOLU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226735375|sp|B1LP80|RNC_ECOSM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226735376|sp|B7LUZ7|RNC_ESCF3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226741369|sp|B5Z141|RNC_ECO5E RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226741370|sp|B6I5E1|RNC_ECOSE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|229564359|sp|B1XB41|RNC_ECODH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|238691723|sp|B2TXY0|RNC_SHIB3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807247|sp|B7UH07|RNC_ECO27 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807248|sp|B7LDG0|RNC_ECO55 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807249|sp|B7MYJ8|RNC_ECO81 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|259491899|sp|C4ZYJ0|RNC_ECOBW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|12516984|gb|AAG57682.1|AE005487_6 RNase III, ds RNA [Escherichia coli O157:H7 str. EDL933]
 gi|26109338|gb|AAN81540.1|AE016764_222 Ribonuclease III [Escherichia coli CFT073]
 gi|42769|emb|CAA26692.1| unnamed protein product [Escherichia coli]
 gi|987642|dbj|BAA10914.1| ribonuclease III [Escherichia coli K-12]
 gi|1033156|gb|AAA79829.1| RNase III [Escherichia coli str. K-12 substr. MG1655]
 gi|1788920|gb|AAC75620.1| RNase III [Escherichia coli str. K-12 substr. MG1655]
 gi|13362904|dbj|BAB36856.1| RNase III [Escherichia coli O157:H7 str. Sakai]
 gi|24053010|gb|AAN44126.1| RNase III [Shigella flexneri 2a str. 301]
 gi|30042225|gb|AAP17950.1| RNase III [Shigella flexneri 2a str. 2457T]
 gi|73856606|gb|AAZ89313.1| RNase III [Shigella sonnei Ss046]
 gi|81242141|gb|ABB62851.1| RNase III, ds RNA [Shigella dysenteriae Sd197]
 gi|81246430|gb|ABB67138.1| RNase III [Shigella boydii Sb227]
 gi|85675458|dbj|BAE76743.1| RNase III [Escherichia coli str. K12 substr. W3110]
 gi|91073467|gb|ABE08348.1| RNase III, ds RNA [Escherichia coli UTI89]
 gi|110344321|gb|ABG70558.1| ribonuclease III [Escherichia coli 536]
 gi|110616060|gb|ABF04727.1| RNase III, ds RNA [Shigella flexneri 5 str. 8401]
 gi|115513912|gb|ABJ01987.1| RNase III [Escherichia coli APEC O1]
 gi|157067726|gb|ABV06981.1| ribonuclease III [Escherichia coli HS]
 gi|157079419|gb|ABV19127.1| ribonuclease III [Escherichia coli E24377A]
 gi|169754078|gb|ACA76777.1| Ribonuclease III [Escherichia coli ATCC 8739]
 gi|169890011|gb|ACB03718.1| RNase III [Escherichia coli str. K-12 substr. DH10B]
 gi|170123495|gb|EDS92426.1| ribonuclease III [Escherichia albertii TW07627]
 gi|170518615|gb|ACB16793.1| ribonuclease III [Escherichia coli SMS-3-5]
 gi|187429787|gb|ACD09061.1| ribonuclease III [Shigella boydii CDC 3083-94]
 gi|187770609|gb|EDU34453.1| ribonuclease III [Escherichia coli O157:H7 str. EC4196]
 gi|188017132|gb|EDU55254.1| ribonuclease III [Escherichia coli O157:H7 str. EC4113]
 gi|188487921|gb|EDU63024.1| ribonuclease III [Escherichia coli 53638]
 gi|189003491|gb|EDU72477.1| ribonuclease III [Escherichia coli O157:H7 str. EC4076]
 gi|189355317|gb|EDU73736.1| ribonuclease III [Escherichia coli O157:H7 str. EC4401]
 gi|189362280|gb|EDU80699.1| ribonuclease III [Escherichia coli O157:H7 str. EC4486]
 gi|189368381|gb|EDU86797.1| ribonuclease III [Escherichia coli O157:H7 str. EC4501]
 gi|189372250|gb|EDU90666.1| ribonuclease III [Escherichia coli O157:H7 str. EC869]
 gi|189378654|gb|EDU97070.1| ribonuclease III [Escherichia coli O157:H7 str. EC508]
 gi|190901994|gb|EDV61741.1| ribonuclease III [Escherichia coli B7A]
 gi|190905707|gb|EDV65329.1| ribonuclease III [Escherichia coli F11]
 gi|192929337|gb|EDV82946.1| ribonuclease III [Escherichia coli E22]
 gi|192958298|gb|EDV88738.1| ribonuclease III [Escherichia coli E110019]
 gi|194412671|gb|EDX28966.1| ribonuclease III [Escherichia coli B171]
 gi|194419624|gb|EDX35704.1| ribonuclease III [Shigella dysenteriae 1012]
 gi|194423376|gb|EDX39367.1| ribonuclease III [Escherichia coli 101-1]
 gi|208727421|gb|EDZ77022.1| ribonuclease III [Escherichia coli O157:H7 str. EC4206]
 gi|208733235|gb|EDZ81922.1| ribonuclease III [Escherichia coli O157:H7 str. EC4045]
 gi|208740471|gb|EDZ88153.1| ribonuclease III [Escherichia coli O157:H7 str. EC4042]
 gi|209162187|gb|ACI39620.1| ribonuclease III [Escherichia coli O157:H7 str. EC4115]
 gi|209762878|gb|ACI79751.1| RNase III [Escherichia coli]
 gi|209762880|gb|ACI79752.1| RNase III [Escherichia coli]
 gi|209762882|gb|ACI79753.1| RNase III [Escherichia coli]
 gi|209762884|gb|ACI79754.1| RNase III [Escherichia coli]
 gi|209762886|gb|ACI79755.1| RNase III [Escherichia coli]
 gi|209913305|dbj|BAG78379.1| ribonuclease III [Escherichia coli SE11]
 gi|215265983|emb|CAS10392.1| RNase III [Escherichia coli O127:H6 str. E2348/69]
 gi|217319891|gb|EEC28316.1| ribonuclease III [Escherichia coli O157:H7 str. TW14588]
 gi|218352927|emb|CAU98726.1| RNase III [Escherichia coli 55989]
 gi|218355446|emb|CAQ88055.1| RNase III [Escherichia fergusonii ATCC 35469]
 gi|218361916|emb|CAQ99516.1| RNase III [Escherichia coli IAI1]
 gi|218366257|emb|CAR04004.1| RNase III [Escherichia coli S88]
 gi|218371067|emb|CAR18894.1| RNase III [Escherichia coli IAI39]
 gi|218428247|emb|CAR09164.2| RNase III [Escherichia coli ED1a]
 gi|218433168|emb|CAR14064.1| RNase III [Escherichia coli UMN026]
 gi|222034272|emb|CAP77013.1| ribonuclease 3 [Escherichia coli LF82]
 gi|226901443|gb|EEH87702.1| ribonuclease III [Escherichia sp. 3_2_53FAA]
 gi|238863504|gb|ACR65502.1| RNase III [Escherichia coli BW2952]
 gi|242378168|emb|CAQ32942.1| RNase III [Escherichia coli BL21(DE3)]
 gi|253323578|gb|ACT28180.1| ribonuclease III [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253974443|gb|ACT40114.1| ribonuclease III [Escherichia coli B str. REL606]
 gi|253978610|gb|ACT44280.1| ribonuclease III [Escherichia coli BL21(DE3)]
 gi|254593917|gb|ACT73278.1| RNase III [Escherichia coli O157:H7 str. TW14359]
 gi|257755310|dbj|BAI26812.1| RNase III [Escherichia coli O26:H11 str. 11368]
 gi|257760399|dbj|BAI31896.1| RNase III [Escherichia coli O103:H2 str. 12009]
 gi|257765610|dbj|BAI37105.1| RNase III [Escherichia coli O111:H- str. 11128]
 gi|260448353|gb|ACX38775.1| Ribonuclease III [Escherichia coli DH1]
 gi|281179616|dbj|BAI55946.1| ribonuclease III [Escherichia coli SE15]
 gi|281601980|gb|ADA74964.1| Ribonuclease 3 [Shigella flexneri 2002017]
 gi|284922517|emb|CBG35604.1| Ribonuclease III [Escherichia coli 042]
 gi|290763715|gb|ADD57676.1| Ribonuclease 3 [Escherichia coli O55:H7 str. CB9615]
 gi|294490667|gb|ADE89423.1| ribonuclease III [Escherichia coli IHE3034]
 gi|306906363|gb|EFN36878.1| ribonuclease III [Escherichia coli W]
 gi|307554586|gb|ADN47361.1| ribonuclease III [Escherichia coli ABU 83972]
 gi|307625885|gb|ADN70189.1| ribonuclease III [Escherichia coli UM146]
 gi|308927515|gb|EFP72987.1| ribonuclease III [Shigella dysenteriae 1617]
 gi|309702953|emb|CBJ02284.1| Ribonuclease III [Escherichia coli ETEC H10407]
 gi|310331782|gb|EFP99017.1| ribonuclease III [Escherichia coli 1827-70]
 gi|312289903|gb|EFR17791.1| ribonuclease III [Escherichia coli 2362-75]
 gi|312947138|gb|ADR27965.1| ribonuclease III [Escherichia coli O83:H1 str. NRG 857C]
 gi|315061886|gb|ADT76213.1| RNase III [Escherichia coli W]
 gi|315137191|dbj|BAJ44350.1| RNase III [Escherichia coli DH1]
 gi|315615829|gb|EFU96461.1| ribonuclease III [Escherichia coli 3431]
 gi|320182108|gb|EFW57012.1| Ribonuclease III [Shigella boydii ATCC 9905]
 gi|320186366|gb|EFW61100.1| Ribonuclease III [Shigella flexneri CDC 796-83]
 gi|320188908|gb|EFW63567.1| Ribonuclease III [Escherichia coli O157:H7 str. EC1212]
 gi|320196403|gb|EFW71027.1| Ribonuclease III [Escherichia coli WV_060327]
 gi|320200131|gb|EFW74720.1| Ribonuclease III [Escherichia coli EC4100B]
 gi|320640816|gb|EFX10310.1| ribonuclease III [Escherichia coli O157:H7 str. G5101]
 gi|320646162|gb|EFX15102.1| ribonuclease III [Escherichia coli O157:H- str. 493-89]
 gi|320651457|gb|EFX19853.1| ribonuclease III [Escherichia coli O157:H- str. H 2687]
 gi|320657058|gb|EFX24877.1| ribonuclease III [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320667543|gb|EFX34463.1| ribonuclease III [Escherichia coli O157:H7 str. LSU-61]
 gi|323159224|gb|EFZ45214.1| ribonuclease III [Escherichia coli E128010]
 gi|323167799|gb|EFZ53494.1| ribonuclease III [Shigella sonnei 53G]
 gi|323184553|gb|EFZ69927.1| ribonuclease III [Escherichia coli 1357]
 gi|323188318|gb|EFZ73610.1| ribonuclease III [Escherichia coli RN587/1]
 gi|323377533|gb|ADX49801.1| ribonuclease III [Escherichia coli KO11]
 gi|323936307|gb|EGB32598.1| ribonuclease III [Escherichia coli E1520]
 gi|323941170|gb|EGB37355.1| ribonuclease III [Escherichia coli E482]
 gi|323944624|gb|EGB40692.1| ribonuclease III [Escherichia coli H120]
 gi|323949221|gb|EGB45112.1| ribonuclease III [Escherichia coli H252]
 gi|323955803|gb|EGB51561.1| ribonuclease III [Escherichia coli H263]
 gi|323961182|gb|EGB56795.1| ribonuclease III [Escherichia coli H489]
 gi|323968015|gb|EGB63427.1| ribonuclease III [Escherichia coli M863]
 gi|323971107|gb|EGB66354.1| ribonuclease III [Escherichia coli TA007]
 gi|323978403|gb|EGB73488.1| ribonuclease III [Escherichia coli TW10509]
 gi|324113094|gb|EGC07070.1| ribonuclease III [Escherichia fergusonii B253]
 gi|324118223|gb|EGC12119.1| ribonuclease III [Escherichia coli E1167]
 gi|325496353|gb|EGC94212.1| ribonuclease III [Escherichia fergusonii ECD227]
 gi|326340373|gb|EGD64177.1| Ribonuclease III [Escherichia coli O157:H7 str. 1125]
 gi|327252277|gb|EGE63949.1| ribonuclease III [Escherichia coli STEC_7v]
 gi|330912336|gb|EGH40846.1| ribonuclease 3 [Escherichia coli AA86]
 gi|331039989|gb|EGI12209.1| ribonuclease III [Escherichia coli H736]
 gi|331042862|gb|EGI15003.1| ribonuclease III [Escherichia coli M605]
 gi|331048878|gb|EGI20954.1| ribonuclease III [Escherichia coli M718]
 gi|331054376|gb|EGI26403.1| ribonuclease III [Escherichia coli TA206]
 gi|331059934|gb|EGI31911.1| ribonuclease III [Escherichia coli TA143]
 gi|331064511|gb|EGI36422.1| ribonuclease III [Escherichia coli TA271]
 gi|331069289|gb|EGI40681.1| ribonuclease III [Escherichia coli TA280]
 gi|331075023|gb|EGI46343.1| ribonuclease III [Escherichia coli H591]
 gi|331079169|gb|EGI50371.1| ribonuclease III [Escherichia coli H299]
 gi|332088079|gb|EGI93204.1| ribonuclease III [Shigella boydii 5216-82]
 gi|332089189|gb|EGI94296.1| ribonuclease III [Shigella dysenteriae 155-74]
 gi|332100627|gb|EGJ03973.1| ribonuclease III [Shigella sp. D9]
 gi|332344442|gb|AEE57776.1| ribonuclease III [Escherichia coli UMNK88]
 gi|332753976|gb|EGJ84350.1| ribonuclease III [Shigella flexneri 4343-70]
 gi|332755808|gb|EGJ86166.1| ribonuclease III [Shigella flexneri 2747-71]
 gi|332761960|gb|EGJ92233.1| ribonuclease III [Shigella flexneri K-671]
 gi|332766568|gb|EGJ96773.1| ribonuclease III [Shigella flexneri 2930-71]
          Length = 226

 Score =  257 bits (657), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 72/213 (33%), Positives = 114/213 (53%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKH---NERLEFLGDSILSYVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPTYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 210


>gi|81648073|sp|Q6G459|RNC_BARHE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|49238110|emb|CAF27317.1| Ribonuclease III [Bartonella henselae str. Houston-1]
          Length = 235

 Score =  257 bits (657), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 117/226 (51%), Positives = 155/226 (68%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M       LEK  G+ F ++  L+KALTHSS+  S Q +YERLEFLGDR+LGLLI+ +L+
Sbjct: 1   MKLPMIDQLEKLTGHYFKDKKKLKKALTHSSVQGSEQGNYERLEFLGDRVLGLLIAEMLY 60

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELSVR NSLV+A+TC+ +A E++L   I V  +++      +T++ ADV+E
Sbjct: 61  QLFPQASEGELSVRLNSLVNAQTCADIALEMELPVMIHVGFEMKNLKGRRLTNMYADVIE 120

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +LIA +YLDGG+E    F+ +YW+ RA +    RRDAKT+LQEWAH + GV P Y+V  R
Sbjct: 121 ALIAVIYLDGGLESVRPFIQRYWQSRAKQMDAGRRDAKTQLQEWAHVQGGVQPHYRVVKR 180

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           SGPDHDP F V V I G A   G   SKR AE++AA ++L+REGIW
Sbjct: 181 SGPDHDPVFMVEVSIPGFASEIGQGNSKRCAERMAAEKILRREGIW 226


>gi|149002616|ref|ZP_01827548.1| ribonuclease III [Streptococcus pneumoniae SP14-BS69]
 gi|168485011|ref|ZP_02709949.1| ribonuclease III [Streptococcus pneumoniae CDC1873-00]
 gi|168491168|ref|ZP_02715311.1| ribonuclease III [Streptococcus pneumoniae CDC0288-04]
 gi|225856914|ref|YP_002738425.1| ribonuclease III [Streptococcus pneumoniae P1031]
 gi|237649948|ref|ZP_04524200.1| ribonuclease III [Streptococcus pneumoniae CCRI 1974]
 gi|237822503|ref|ZP_04598348.1| ribonuclease III [Streptococcus pneumoniae CCRI 1974M2]
 gi|254807905|sp|C1CKY7|RNC_STRZP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|147759227|gb|EDK66220.1| ribonuclease III [Streptococcus pneumoniae SP14-BS69]
 gi|172041872|gb|EDT49918.1| ribonuclease III [Streptococcus pneumoniae CDC1873-00]
 gi|183574495|gb|EDT95023.1| ribonuclease III [Streptococcus pneumoniae CDC0288-04]
 gi|225724496|gb|ACO20348.1| ribonuclease III [Streptococcus pneumoniae P1031]
 gi|332200695|gb|EGJ14767.1| ribonuclease III [Streptococcus pneumoniae GA41317]
 gi|332201711|gb|EGJ15781.1| ribonuclease III [Streptococcus pneumoniae GA47368]
          Length = 232

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 113/228 (49%), Gaps = 8/228 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + L+      FA+++LLE A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MKELQ-TVLKNHFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS     +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFNQFIKLGKGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D  E+ + AL LD  +     F+ +    + +++G+F    D KT LQE       V   
Sbjct: 120 DAFEAFLGALLLDKDVAKVKEFIYQVIIPK-VEAGEFEMITDYKTHLQELLQVNGDVAIR 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           Y+V   +GP HD  F V V + G +  QG   SK+ AEQ AA   +++
Sbjct: 179 YQVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226


>gi|213161855|ref|ZP_03347565.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi
           str. E00-7866]
          Length = 231

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 74/213 (34%), Positives = 114/213 (53%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 6   MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKH---NERLEFLGDSILSFVIANALY 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 63  HRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTVE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  ++K R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 123 ALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 182

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 183 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 215


>gi|146312695|ref|YP_001177769.1| ribonuclease III [Enterobacter sp. 638]
 gi|189043313|sp|A4WDD8|RNC_ENT38 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|145319571|gb|ABP61718.1| RNAse III [Enterobacter sp. 638]
          Length = 226

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 72/213 (33%), Positives = 113/213 (53%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F +  LL++ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFQHHELLQQALTHRSASSKH---NERLEFLGDSILSYVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSDIQTVEQLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 210


>gi|149183216|ref|ZP_01861662.1| ribonuclease III [Bacillus sp. SG-1]
 gi|148849081|gb|EDL63285.1| ribonuclease III [Bacillus sp. SG-1]
          Length = 249

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 107/226 (47%), Gaps = 7/226 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59
            ++   +++    F N  LL +A THSS  + ++    E  ERLEFLGD +L L +S  L
Sbjct: 18  EKFKEFQRKHNIKFNNEKLLRQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTVSQFL 77

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  + +  EGEL+    ++V   +    A EL     + +             ++ ADV 
Sbjct: 78  YKKYPTMSEGELTKLRAAIVCEPSLVTFANELKFGELVLLGKGEELTGGRERPALLADVF 137

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177
           E+ I ALYLD G+E   + +++    + + SG F    D K++LQE        T EY +
Sbjct: 138 EAFIGALYLDQGLEPVLSILEENVYPK-INSGAFSHVMDFKSQLQELVQRDSAGTIEYGI 196

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               GP H+  F   V ++G     G   SK+ AEQ AA   L++ 
Sbjct: 197 LQEKGPAHNREFVSRVCLNGEELGIGTGRSKKEAEQHAAQMALEKL 242


>gi|126654291|ref|ZP_01726068.1| ribonuclease III [Bacillus sp. B14905]
 gi|126589255|gb|EAZ83416.1| ribonuclease III [Bacillus sp. B14905]
          Length = 254

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 64/222 (28%), Positives = 105/222 (47%), Gaps = 5/222 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60
           ++  L+  +   F N++LL +A THSS  + ++       ERLEFLGD +L L +S  LF
Sbjct: 22  QFELLQHELNITFVNKNLLYQAFTHSSYVNEHRRKLFTDNERLEFLGDAVLELSVSKYLF 81

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             + +  EGEL+    S+V   +    A EL    F+ +             ++ ADV E
Sbjct: 82  EKYPNMSEGELTKLRASIVCEPSLVIFANELGFGRFVLLGKGEELTGGRERPALLADVFE 141

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           S + ALYLD  ++   +F+++    +  + +     D K++LQE           Y++  
Sbjct: 142 SFVGALYLDQDLQTVVSFLERIVFPKVEVGAFSHVMDFKSQLQEMVQQTNNGLLHYEIID 201

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             GP H+  F   V ++G     G   SK+ AEQ AA   ++
Sbjct: 202 EKGPAHNRTFVSSVLLNGQELGIGRGKSKKEAEQQAAQCAMR 243


>gi|154505348|ref|ZP_02042086.1| hypothetical protein RUMGNA_02863 [Ruminococcus gnavus ATCC 29149]
 gi|153794391|gb|EDN76811.1| hypothetical protein RUMGNA_02863 [Ruminococcus gnavus ATCC 29149]
          Length = 252

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 75/215 (34%), Positives = 111/215 (51%), Gaps = 5/215 (2%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           IGY F + SLLE+A+ HSS ++          ERLEFLGD +L L+ S  LF       E
Sbjct: 35  IGYEFQDFSLLEQAMMHSSYTNEKHLEKYHCNERLEFLGDAVLELVSSEFLFLESPKVSE 94

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+L+    S+V   + +  ARE++L S++ +             S+ +D +E+LI A+YL
Sbjct: 95  GKLTKTRASMVCEPSLAFCAREIELGSYLLLGKGEEATGGRQRPSVTSDAMEALIGAIYL 154

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           DGG   A  F+ ++     L++ K   D+KT LQE   A       Y +    GPDH+  
Sbjct: 155 DGGFTNAKEFIHRFILT-DLENKKLFYDSKTILQEIVQADMEEGISYHLIKEEGPDHNKS 213

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           FTV V+I       G   +K+AAEQ AA + + + 
Sbjct: 214 FTVEVKIGETVYGTGSGRTKKAAEQEAAYKAILKL 248


>gi|332799147|ref|YP_004460646.1| Ribonuclease 3 [Tepidanaerobacter sp. Re1]
 gi|332696882|gb|AEE91339.1| Ribonuclease 3 [Tepidanaerobacter sp. Re1]
          Length = 238

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 77/222 (34%), Positives = 112/222 (50%), Gaps = 6/222 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTLLFNHFD 64
           L++ IG  F N + L +A  H S+++     YQE+ +RLEFLGD +L L IS  L+ H+D
Sbjct: 14  LQENIGIQFNNLNTLNQAFIHPSLTNEKEKPYQENNQRLEFLGDAVLELAISEYLYRHYD 73

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+++      V   + +Q+AR+L L  ++ +S            SI AD +E+LI 
Sbjct: 74  FLTEGQMTKIRAFTVCESSLAQIARQLFLGDYLILSKGEENTGGREKVSILADTLEALIG 133

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+Y+D   +    F+ K  +    K+  G++  D KT+LQE           Y V   SG
Sbjct: 134 AIYIDKNYKTTYDFIIKNLEAIIFKAIQGEWGTDYKTDLQELLQKFDEDKILYNVVNESG 193

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           PDHD  F V V         G+  SK+ AEQ AA E L R  
Sbjct: 194 PDHDKLFCVEVVWKNKILGTGIGKSKKQAEQNAAKEALDRMN 235


>gi|110798679|ref|YP_696405.1| ribonuclease III [Clostridium perfringens ATCC 13124]
 gi|110673326|gb|ABG82313.1| ribonuclease III [Clostridium perfringens ATCC 13124]
          Length = 241

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 82/225 (36%), Positives = 121/225 (53%), Gaps = 4/225 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61
           +    +EK IG  F N+ +L  ALTHSS ++ ++  +  ERLEFLGD +L L ++  LFN
Sbjct: 8   INLIEVEKLIGIEFENKGVLITALTHSSYANQFKDVKYNERLEFLGDSVLQLCVTKYLFN 67

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           ++    EGEL+     +V   +  +V++ L L  +IR+S           TSIQAD +E+
Sbjct: 68  NYKDKSEGELTKIRALVVCENSLHKVSKNLSLGKYIRMSKGEELTGGRERTSIQADALEA 127

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           +IAA+YLD GIEVA  F+ + +K    K+   +   D KT LQE       V   Y +  
Sbjct: 128 VIAAVYLDKGIEVANDFILRNFKDVIDKAINEEIILDFKTRLQEVLQKNGEVNIVYNLVK 187

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             GP H  +F   + I+     QG+  SK+ +EQ AA   L+R G
Sbjct: 188 HEGPPHRRKFFTDLLINNEIMGQGVGFSKKESEQNAAKAALQRLG 232


>gi|15901109|ref|NP_345713.1| ribonuclease III [Streptococcus pneumoniae TIGR4]
 gi|111658429|ref|ZP_01409108.1| hypothetical protein SpneT_02000400 [Streptococcus pneumoniae
           TIGR4]
 gi|22654070|sp|Q97QG6|RNC_STRPN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|14972730|gb|AAK75353.1| ribonuclease III [Streptococcus pneumoniae TIGR4]
          Length = 232

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 112/228 (49%), Gaps = 8/228 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + L+      FA++ LLE A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MKELQ-TVLKNHFAIEFADKKLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS     +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D  E+ + AL LD  +     F+ +    + +++G+F    D KT LQE       V   
Sbjct: 120 DAFEAFLGALLLDKDVAKVKEFIYQVMIPK-VEAGEFEMITDYKTHLQELLQVNGDVAIR 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           Y+V   +GP HD  F V V + G +  QG   SK+ AEQ AA   +++
Sbjct: 179 YQVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226


>gi|169827094|ref|YP_001697252.1| ribonuclease 3 [Lysinibacillus sphaericus C3-41]
 gi|168991582|gb|ACA39122.1| Ribonuclease 3 [Lysinibacillus sphaericus C3-41]
          Length = 254

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 64/222 (28%), Positives = 105/222 (47%), Gaps = 5/222 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60
           ++  L+  +   F N++LL +A THSS  + ++       ERLEFLGD +L L +S  LF
Sbjct: 22  QFELLQHELNITFINKNLLYQAFTHSSYVNEHRRKLFTDNERLEFLGDAVLELSVSKYLF 81

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             + +  EGEL+    S+V   +    A EL    F+ +             ++ ADV E
Sbjct: 82  EKYPNMSEGELTKLRASIVCEPSLVIFANELGFGRFVLLGKGEELTGGRERPALLADVFE 141

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           S + ALYLD  ++   +F+++    +  + +     D K++LQE           Y++  
Sbjct: 142 SFVGALYLDQDLQTVVSFLERIVFPKVEVGAFSHVMDFKSQLQEMVQQTNNGLLHYEIID 201

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             GP H+  F   V ++G     G   SK+ AEQ AA   ++
Sbjct: 202 EKGPAHNRTFVSSVLLNGQELGIGRGKSKKEAEQQAAQCAMR 243


>gi|327394842|dbj|BAK12264.1| ribonuclease III Rnc [Pantoea ananatis AJ13355]
          Length = 226

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 72/213 (33%), Positives = 114/213 (53%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F +  LL++ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPILINKLQRKLGYTFTHSELLQQALTHRSASSKH---NERLEFLGDSILSYVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSDIQTVEKLILDWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SG+  P  G+  S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGMAEPVVGVGSSRRK 210


>gi|301154741|emb|CBW14204.1| RNase III [Haemophilus parainfluenzae T3T1]
          Length = 227

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 81/227 (35%), Positives = 115/227 (50%), Gaps = 11/227 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ L    LE++IGY F++   L+ ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNHLD--RLERKIGYQFSDLKNLKLALTHRSAS---TQHNERLEFLGDSILNYVIADALY 55

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EGELS    +LV   T + +AR  +L  ++ + S   K       SI AD VE
Sbjct: 56  HQFPRCNEGELSRMRATLVREPTLAIIARNFELGDYMSLGSGELKSGGFRRESILADCVE 115

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+ LD   + A   V  ++K     +K G  ++DAKT LQE+   K    P Y+V 
Sbjct: 116 AVIGAMALDSSFDKAADIVRSWYKTLLAEIKPGDNQKDAKTRLQEYLQGKHFALPTYEVI 175

Query: 179 FRSGPDHDPRFTVVVEISGLA----PAQGMDCSKRAAEQVAAAEVLK 221
              G  H   FTV   +  +            S+R AEQ AA ++LK
Sbjct: 176 KIEGEAHCQTFTVECTVKNVPNIDRTFIAKGSSRRKAEQAAAEQILK 222


>gi|254507535|ref|ZP_05119669.1| ribonuclease III [Vibrio parahaemolyticus 16]
 gi|219549605|gb|EED26596.1| ribonuclease III [Vibrio parahaemolyticus 16]
          Length = 225

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 75/213 (35%), Positives = 116/213 (54%), Gaps = 7/213 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M++   + LEK++GY F +  L+  ALTH S +  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNS-PIAKLEKKVGYQFNDAELINLALTHRSANGKH---NERLEFLGDSILSFVIADDLY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ RE +L   +++     K       SI AD VE
Sbjct: 57  HRFPKVNEGDMSRMRATLVRGNTLAELGREFELGDHLKLGPGELKSGGFRRDSILADAVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD  IEV  + +  +++ R  A+K G  ++D KT LQE+   +    P Y VT
Sbjct: 117 AIIGAIYLDSDIEVVRSIILSWYQSRLDAIKPGVSQKDPKTRLQEFLQGRRKPLPAYTVT 176

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRA 210
              G  H+  FTV  E++G+  P  G   S+R 
Sbjct: 177 NIKGEAHNQEFTVSCEVAGIGQPVIGKGTSRRK 209


>gi|254448879|ref|ZP_05062335.1| ribonuclease III [gamma proteobacterium HTCC5015]
 gi|198261569|gb|EDY85858.1| ribonuclease III [gamma proteobacterium HTCC5015]
          Length = 225

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 82/221 (37%), Positives = 115/221 (52%), Gaps = 6/221 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            STL+  + Y F+N  LLE A+TH S S +   + ERLEFLGD IL   ++  LF  F  
Sbjct: 2   LSTLQSTLNYTFSNGDLLEVAVTHRSASKT---NNERLEFLGDSILNFTVAAELFERFPE 58

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    SLV   + +  A+++DL  F+++     K       SI AD VE++I A
Sbjct: 59  RPEGDLSRLRASLVDKSSLAAHAKKMDLGPFLKLGGGELKSGGWRRDSILADAVEAIIGA 118

Query: 126 LYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YLDGGIE A  F+   +     +L +    +DAKT LQEW   +    P+Y++   SG 
Sbjct: 119 IYLDGGIESAQQFIRDLYDGDFESLPTANELKDAKTRLQEWLQGRHYALPQYEMVEVSGK 178

Query: 184 DHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
            H+ +FTV   I            S+R AEQ AA   L + 
Sbjct: 179 PHEQQFTVSCYIDSHDVQVNATGRSRRKAEQAAAETALAQL 219


>gi|308187806|ref|YP_003931937.1| RNase III, ds RNA [Pantoea vagans C9-1]
 gi|308058316|gb|ADO10488.1| RNase III, ds RNA [Pantoea vagans C9-1]
          Length = 226

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 73/213 (34%), Positives = 114/213 (53%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F +  LL++ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPILINKLQRKLGYTFTHSELLQQALTHRSASSKH---NERLEFLGDSILSYVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  IE     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGIFLDSSIERVEQLILDWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SG+  P  G+  S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGMAEPVVGVGSSRRK 210


>gi|313906054|ref|ZP_07839406.1| ribonuclease III [Eubacterium cellulosolvens 6]
 gi|313469099|gb|EFR64449.1| ribonuclease III [Eubacterium cellulosolvens 6]
          Length = 228

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 115/224 (51%), Gaps = 7/224 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLIS 56
           M  LR   LE++ G+ F + S L+ A++HSS ++     ++   ERLEFLGD +L L+ S
Sbjct: 1   MKKLR--ELEQKTGHVFNDISWLKLAMSHSSYANEQHLGHRGCNERLEFLGDAVLELVSS 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L++ +    EG+L+    SLV   T +  AR + L  ++ +             S+ +
Sbjct: 59  EYLYDTYPEMPEGKLTRLRASLVCEPTLAYDARCIGLPEYLLLGKGEDATGGRKRDSVVS 118

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D +E+ I A++ DGG E A  F+ +Y     +++ +   D+KT LQE   +       Y+
Sbjct: 119 DALEATIGAIFKDGGFEEAKKFILRYI-MNDVENKQLFHDSKTRLQEMIQSVTDEELSYQ 177

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +   SGPDH+  F   V +      +G   SK+AAEQ AA + +
Sbjct: 178 IVAESGPDHEKVFEAEVRLGDKLLGRGTGHSKKAAEQQAAYKAI 221


>gi|210612575|ref|ZP_03289366.1| hypothetical protein CLONEX_01568 [Clostridium nexile DSM 1787]
 gi|210151500|gb|EEA82507.1| hypothetical protein CLONEX_01568 [Clostridium nexile DSM 1787]
          Length = 231

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 79/220 (35%), Positives = 112/220 (50%), Gaps = 5/220 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHF 63
            L++RIGY F  + LL+ AL HSS ++       +  ERLEFLGD +L L+ S  LF   
Sbjct: 7   ELQERIGYTFRRQELLKSALMHSSYTNETHLPKYKCNERLEFLGDAVLELVSSEFLFFAD 66

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EGEL+    S+V   + +  ARE++L  ++ +             SI +D +E+LI
Sbjct: 67  RKMPEGELTKTRASMVCEPSLAFCAREIELGKYLFMGRGEENTGGRERDSITSDALEALI 126

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            A+YLDGG   A  F+ K+     L+  K   D+KT LQE   A F     Y +    GP
Sbjct: 127 GAIYLDGGFANAKEFILKFVL-NDLEHKKLFYDSKTILQEIVQAHFPYGVLYHLIKEEGP 185

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           DH+  FTV V I      +G   +K+AAEQ AA   + + 
Sbjct: 186 DHNKSFTVAVHIGEECYGEGTGRTKKAAEQEAAYHAILKL 225


>gi|16761493|ref|NP_457110.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|22654063|sp|Q8Z4K4|RNC_SALTI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|25289227|pir||AC0829 ribonuclease III (EC 3.1.26.3) [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16503793|emb|CAD02783.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 226

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 74/213 (34%), Positives = 113/213 (53%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKH---NERLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  ++K R   +  G  ++D KT LQE+        P Y V 
Sbjct: 118 ALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGHHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 210


>gi|149192067|ref|ZP_01870292.1| ribonuclease III [Vibrio shilonii AK1]
 gi|148834092|gb|EDL51104.1| ribonuclease III [Vibrio shilonii AK1]
          Length = 225

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 75/213 (35%), Positives = 114/213 (53%), Gaps = 7/213 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M++     LEK++GY F +  LL  ALTH S + ++    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNS-SIERLEKKLGYHFNDSELLMLALTHRSANGNH---NERLEFLGDSILSFVIADDLY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ RE  L  ++++     K       SI AD VE
Sbjct: 57  HRFPKVNEGDMSRMRATLVRGNTLAELGREFVLGDYLKLGPGELKSGGFRRDSILADAVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD  +E+    V  ++  R  A+K G  ++D KT LQE+   +    P Y VT
Sbjct: 117 AIIGAIYLDSDVEMVRKIVLSWYMTRLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVT 176

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  H+  FTV  E++G+  P  G   S+R 
Sbjct: 177 NIKGEAHNQEFTVSCEVAGVDEPVIGRGTSRRK 209


>gi|238897755|ref|YP_002923434.1| RNase III, ds RNA [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|259491902|sp|C4K3Z3|RNC_HAMD5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|229465512|gb|ACQ67286.1| RNase III, ds RNA [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 226

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 126/226 (55%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+++  ++LE ++ Y+F  RSLL +ALTH S+   + +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNSININSLELKLRYSFKERSLLLQALTHRSL---HTQHNERLEFLGDSILSFVIANQLY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG +S    +LV  +T +++ARE D+ +++++     K   +   SI AD +E
Sbjct: 58  HRFPEINEGNMSRMRATLVRGDTLTEIAREFDIGAYLQLGQGELKTGGAQRESILADSIE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A++LD  I+     + +++ +R   +     ++D KT LQE+  +     P Y + 
Sbjct: 118 AIIGAIFLDSDIQTVEKTILRWYHKRLEQINPTHHQKDPKTRLQEYMQSHQLPLPFYLLA 177

Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
              G  HD  FT+  ++SG      G   ++R AEQ AA + LK+ 
Sbjct: 178 QVCGEAHDQEFTIHCQVSGLEELVVGKGSNRRKAEQEAAEKTLKKL 223


>gi|296444865|ref|ZP_06886827.1| ribonuclease III [Methylosinus trichosporium OB3b]
 gi|296257533|gb|EFH04598.1| ribonuclease III [Methylosinus trichosporium OB3b]
          Length = 233

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 102/221 (46%), Positives = 132/221 (59%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               LE  +G+ F NR LLE ALTH S S +  ESYERLEFLGDR+LG++++ LL+  F 
Sbjct: 8   DLEALEASVGHGFVNRGLLEHALTHVSGSTARTESYERLEFLGDRVLGVVVAHLLYETFP 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EGELS R   LV  E+C++VA    +  F+R+     +       +I  D+ E++I 
Sbjct: 68  AESEGELSRRLADLVRKESCAEVAERWGVGPFMRLGDGEAQTGGRKKRAILGDMCEAIIG 127

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A+YLDGG   A   V + +  R    G+  RDAKT LQEWA A+   TP Y++T RSGPD
Sbjct: 128 AVYLDGGAAAAEAVVREAFGARMQTQGRRLRDAKTSLQEWAQARRLPTPCYRMTSRSGPD 187

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           H P F V V + G  PA+G   SKR AEQ AA   L REGI
Sbjct: 188 HAPFFKVEVVVEGFVPAEGGGASKRVAEQSAAQAFLDREGI 228


>gi|325577735|ref|ZP_08148010.1| ribonuclease III [Haemophilus parainfluenzae ATCC 33392]
 gi|325160480|gb|EGC72606.1| ribonuclease III [Haemophilus parainfluenzae ATCC 33392]
          Length = 227

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 81/227 (35%), Positives = 115/227 (50%), Gaps = 11/227 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ L    LE++IGY F++   L+ ALTH S S    +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNHLD--RLERKIGYQFSDLKNLKLALTHRSAS---TQHNERLEFLGDSILNYVIADALY 55

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EGELS    +LV   T + +AR  +L  ++ + S   K       SI AD VE
Sbjct: 56  HQFPRCNEGELSRMRATLVREPTLAMLARNFELGDYMSLGSGELKSGGFRRESILADCVE 115

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+ LD   + A   V  ++K     +K G  ++DAKT LQE+   K    P Y+V 
Sbjct: 116 AVIGAMALDSSFDKAADIVRSWYKTLLAEIKPGDNQKDAKTRLQEYLQGKHFALPTYEVI 175

Query: 179 FRSGPDHDPRFTVVVEISGLA----PAQGMDCSKRAAEQVAAAEVLK 221
              G  H   FTV   +  +            S+R AEQ AA ++LK
Sbjct: 176 KIEGEAHCQTFTVECTVKNVPNIDRTFIAKGSSRRKAEQAAAEQILK 222


>gi|313673188|ref|YP_004051299.1| rnase iii [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939944|gb|ADR19136.1| RNAse III [Calditerrivibrio nitroreducens DSM 19672]
          Length = 229

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 79/220 (35%), Positives = 114/220 (51%), Gaps = 4/220 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61
           +    L + + Y F N+ LL +ALTHSS S+  +   +YERLEFLGD +L L++S  L  
Sbjct: 1   MNLEKLNEILNYNFENKELLIEALTHSSYSYENKLCRNYERLEFLGDAVLQLIVSEYLIF 60

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +    EG LS      VS E  S++A+++DL +FIR+             SI  D+ ES
Sbjct: 61  KYKDFDEGMLSRYRAYFVSEEFISELAKQIDLGNFIRLGKGELNSGGKDRPSILCDIFES 120

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           ++AA+YLDGG   A  F+      +  +        D K+ELQ+     F   P+YKV  
Sbjct: 121 IVAAMYLDGGYNEARRFIITIASDKIDEVIQQNIFTDYKSELQKLTQKIFESLPDYKVKD 180

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            +GP+HD  F V + I+      G   SK+ AEQ AA + 
Sbjct: 181 ETGPEHDKTFIVDLYINDRYYCSGSGKSKKKAEQDAAKKA 220


>gi|292489090|ref|YP_003531977.1| RNase III, ds RNA [Erwinia amylovora CFBP1430]
 gi|292900214|ref|YP_003539583.1| Ribonuclease III [Erwinia amylovora ATCC 49946]
 gi|291200062|emb|CBJ47188.1| Ribonuclease III [Erwinia amylovora ATCC 49946]
 gi|291554524|emb|CBA22094.1| RNase III, ds RNA [Erwinia amylovora CFBP1430]
 gi|312173248|emb|CBX81503.1| RNase III, ds RNA [Erwinia amylovora ATCC BAA-2158]
          Length = 226

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 73/213 (34%), Positives = 113/213 (53%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINKLQRKLGYTFTHQELLQQALTHRSASSKH---NERLEFLGDSILSYVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  QRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGYRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  ++  R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSDIQRVEQLILSWYASRLDQISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRA 210
              G  HD  FT+  ++SG+A P  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGMADPVVGTGSSRRK 210


>gi|71281241|ref|YP_270777.1| ribonuclease III [Colwellia psychrerythraea 34H]
 gi|90101619|sp|Q47WP5|RNC_COLP3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|71146981|gb|AAZ27454.1| ribonuclease III [Colwellia psychrerythraea 34H]
          Length = 266

 Score =  256 bits (655), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 121/224 (54%), Gaps = 10/224 (4%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +    + L K++GY F    LL +ALTH S   ++    ERLEFLGD ILG +I+  L++
Sbjct: 4   NPHNLARLTKKLGYEFNEPLLLVQALTHRSAKGAH---NERLEFLGDSILGFVIAEALYD 60

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F    EG+L+   +SLV   T ++VAR+ +L   + +     K       SI  D +E+
Sbjct: 61  KFPKHDEGDLTRMRSSLVKGVTLAEVARDFNLGECLILGPGELKSGGHHRESILEDAIEA 120

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           +I A+YLD  IE     +  ++++R   +K G  ++D KT LQE+   +    P Y+V  
Sbjct: 121 IIGAVYLDSNIECCKALILSWFERRLMVIKPGNEQKDPKTRLQEFLQGRKIPLPTYEVID 180

Query: 180 RSGPDHDPRFTVVVE---ISGLAPAQGMDCSKRAAEQVAAAEVL 220
            +G  H+  FTV  +   IS +  A+G   S+R AEQ AA ++L
Sbjct: 181 TTGQSHNQEFTVRCQTSVISEVVIAKGT--SRRKAEQEAAQQIL 222


>gi|311278500|ref|YP_003940731.1| ribonuclease III [Enterobacter cloacae SCF1]
 gi|308747695|gb|ADO47447.1| ribonuclease III [Enterobacter cloacae SCF1]
          Length = 226

 Score =  256 bits (655), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 72/213 (33%), Positives = 114/213 (53%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFHHQELLQQALTHRSASSKH---NERLEFLGDSILSYVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSDIQTVEQLILSWYQSRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 210


>gi|266623888|ref|ZP_06116823.1| ribonuclease III [Clostridium hathewayi DSM 13479]
 gi|288864294|gb|EFC96592.1| ribonuclease III [Clostridium hathewayi DSM 13479]
          Length = 229

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 73/230 (31%), Positives = 119/230 (51%), Gaps = 6/230 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           MS  +   LE RIGY F +R LL +A+THSS ++ ++    E  ERLEFLGD +L ++ S
Sbjct: 1   MSK-KLHELEGRIGYRFTDRQLLTQAMTHSSYANEHRLNKLECNERLEFLGDSVLEVVSS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L++ +    EG+L+    S+V   T +  A ++DL +++ +             S+ +
Sbjct: 60  DFLYHKYPERPEGDLTKIRASIVCEPTLAYCAEDIDLGAYLLLGKGEEATGGRGRASVVS 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D +E+LI A+YLDGG   A  F+ ++     ++  +   D+KT LQE   ++      Y+
Sbjct: 120 DAMEALIGAIYLDGGFANAKEFILRFI-MNDIEHKQLFFDSKTILQEIVQSQTDQPLAYE 178

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           +    GPDH+  F     I      +G   +K+AAE VAA   + +   W
Sbjct: 179 LLREEGPDHNKLFESRALIGEEEIGRGTGRTKKAAEAVAAYHGILKLKKW 228


>gi|15903170|ref|NP_358720.1| ribonuclease III [Streptococcus pneumoniae R6]
 gi|116517072|ref|YP_816576.1| ribonuclease III [Streptococcus pneumoniae D39]
 gi|148989271|ref|ZP_01820651.1| ribonuclease III [Streptococcus pneumoniae SP6-BS73]
 gi|148998680|ref|ZP_01826119.1| ribonuclease III [Streptococcus pneumoniae SP11-BS70]
 gi|168575703|ref|ZP_02721618.1| ribonuclease III [Streptococcus pneumoniae MLV-016]
 gi|194398097|ref|YP_002037848.1| ribonuclease III [Streptococcus pneumoniae G54]
 gi|307067896|ref|YP_003876862.1| dsRNA-specific ribonuclease [Streptococcus pneumoniae AP200]
 gi|73917586|sp|Q8DPJ8|RNC_STRR6 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|122278538|sp|Q04K72|RNC_STRP2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226741378|sp|B5E4Y2|RNC_STRP4 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|15458754|gb|AAK99930.1| Ribonuclease III [Streptococcus pneumoniae R6]
 gi|116077648|gb|ABJ55368.1| ribonuclease III [Streptococcus pneumoniae D39]
 gi|147755517|gb|EDK62565.1| ribonuclease III [Streptococcus pneumoniae SP11-BS70]
 gi|147925249|gb|EDK76328.1| ribonuclease III [Streptococcus pneumoniae SP6-BS73]
 gi|183578209|gb|EDT98737.1| ribonuclease III [Streptococcus pneumoniae MLV-016]
 gi|194357764|gb|ACF56212.1| ribonuclease III [Streptococcus pneumoniae G54]
 gi|306409433|gb|ADM84860.1| dsRNA-specific ribonuclease [Streptococcus pneumoniae AP200]
          Length = 232

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 112/228 (49%), Gaps = 8/228 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + L+      FA++ LLE A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MKELQ-TVLKNHFEIEFADKKLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+LS     +V  E+ +  AR+     FI++     K       +I  
Sbjct: 60  EYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D  E+ + AL LD  +     F+ +    + +++G+F    D KT LQE       V   
Sbjct: 120 DAFEAFLGALLLDKDVAKVKEFIYQVMIPK-VEAGEFEMITDYKTHLQELLQVNGDVAIR 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           Y+V   +GP HD  F V V + G +  QG   SK+ AEQ AA   +++
Sbjct: 179 YQVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226


>gi|2500552|sp|Q52698|RNC_RHOCA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|1177610|emb|CAA92647.1| endoribonuclease III [Rhodobacter capsulatus]
          Length = 228

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 87/221 (39%), Positives = 124/221 (56%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           A   S    R+G+ F     L +ALTHSS+  + +   +RLEFLGDR+LGL ++  LF+ 
Sbjct: 4   AADLSAFMDRLGHRFTTPEHLVRALTHSSLGSATRPDNQRLEFLGDRVLGLSMAEALFHA 63

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
              A EG+L+ RFN+LV  ETC+ VAR++DL + +++             ++  D +E++
Sbjct: 64  DGRASEGQLAPRFNALVRKETCAAVARDIDLGAVLKLGRSEMMSGGRRKDALLGDAMEAV 123

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           IAA+YLD G EVA   V + W  R        RD KT LQEWA A+    P Y+   R G
Sbjct: 124 IAAVYLDAGFEVARALVLRLWAARIQSVDNDARDPKTALQEWAQARGLPPPRYETLGRDG 183

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           PDH P+F + V ++     +    SKR AEQ AA  +L+R 
Sbjct: 184 PDHAPQFRIAVVLASGETEEAQAGSKRNAEQAAAKALLERL 224


>gi|294678827|ref|YP_003579442.1| ribonuclease III [Rhodobacter capsulatus SB 1003]
 gi|294477647|gb|ADE87035.1| ribonuclease III [Rhodobacter capsulatus SB 1003]
          Length = 228

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 87/221 (39%), Positives = 124/221 (56%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           A   S    R+G+ F     L +ALTHSS+  + +   +RLEFLGDR+LGL ++  LF+ 
Sbjct: 4   AADLSAFMDRLGHRFTTPEHLVRALTHSSLGSATRPDNQRLEFLGDRVLGLSMAEALFHA 63

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
              A EG+L+ RFN+LV  ETC+ VAR++DL + +++             ++  D +E++
Sbjct: 64  DGRASEGQLAPRFNALVRKETCAAVARDIDLGAVLKLGRSEMMSGGRRKDALLGDAMEAV 123

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           IAA+YLD G EVA   V + W  R        RD KT LQEWA A+    P Y+   R G
Sbjct: 124 IAAVYLDAGFEVARALVLRLWAGRIQSVDNDARDPKTALQEWAQARGLPPPRYETLGREG 183

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           PDH P+F + V ++     +    SKR AEQ AA  +L+R 
Sbjct: 184 PDHAPQFRIAVVLASGETEEAQAGSKRNAEQAAAKALLERL 224


>gi|213018872|ref|ZP_03334680.1| ribonuclease III [Wolbachia endosymbiont of Culex quinquefasciatus
           JHB]
 gi|212995823|gb|EEB56463.1| ribonuclease III [Wolbachia endosymbiont of Culex quinquefasciatus
           JHB]
          Length = 233

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 81/228 (35%), Positives = 127/228 (55%), Gaps = 6/228 (2%)

Query: 1   MSALRY--STLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLL 54
           M  +R    T+ K I Y F + ++LE+ALTH S++    E     YERLEFLGD +L ++
Sbjct: 1   MINMRVLNDTISKVINYKFTDYAILEEALTHPSVNKRNSEDQVVSYERLEFLGDSVLNMV 60

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
           +S +LF  F   KEG L+ R   LV   T + VA+E++L +FI +++  R +        
Sbjct: 61  VSVMLFKMFPEEKEGALAKRKTDLVCGSTIANVAKEIELGNFIIMNNSERCNGGKCNLKN 120

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174
             + +E+LI A+Y+DGG+E    F+ ++W++ A       +D KT LQEW        P+
Sbjct: 121 LENSLEALIGAIYIDGGLESVEKFIIRHWEKLAKDILDPPQDPKTSLQEWTQRNKLPLPK 180

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           Y++  ++GP H+P FT+ V I           SK+ AEQ AA  +L++
Sbjct: 181 YELVKQTGPAHNPEFTISVCIESYDKVSACAPSKKIAEQKAAELILEK 228


>gi|282600119|ref|ZP_05973085.2| ribonuclease III [Providencia rustigianii DSM 4541]
 gi|282566488|gb|EFB72023.1| ribonuclease III [Providencia rustigianii DSM 4541]
          Length = 263

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 73/213 (34%), Positives = 111/213 (52%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ L    L++++GY F    LL +ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 38  MNPLLLEKLQRKLGYTFTQHDLLIQALTHRSASSKH---NERLEFLGDSILSFVIANDLY 94

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 95  HRFPKVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 154

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  ++K R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 155 ALIGGIFLDSDIQTIERIILAWYKGRLDEISPGDKQKDPKTRLQEYLQGRHLPLPNYLVV 214

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRA 210
              G  HD  FT+  E+SG+  +  G+  S+R 
Sbjct: 215 QVKGEAHDQEFTIHCEVSGIEQSINGVGSSRRK 247


>gi|239624036|ref|ZP_04667067.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522067|gb|EEQ61933.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 235

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 70/222 (31%), Positives = 117/222 (52%), Gaps = 5/222 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
              LE+RI Y F ++SL  +ALTHSS ++ ++       ERLEFLGD +L ++ S  L++
Sbjct: 5   LKELEERIDYQFKDQSLFSQALTHSSYANEHRLDHSRCNERLEFLGDAVLEIVTSDFLYH 64

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EG+L+    S+V   T +  A ++ L  ++ +             S+ +D +E+
Sbjct: 65  KYATLPEGDLTKIRASIVCEPTLAYCAGDIRLGEYLFLGKGEDATGGRGRNSVVSDAMEA 124

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           LI A+YLDGG   A  F+ ++     ++  +   D+KT LQE   ++      Y++    
Sbjct: 125 LIGAIYLDGGFANAKEFIHRFIL-NDIEHKQLFYDSKTILQEMVQSRQAEALSYEILREE 183

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           GPDH+  F V  +I      +GM  +K+AAEQVAA   + + 
Sbjct: 184 GPDHNKSFEVCAKIGDAEIGRGMGRTKKAAEQVAAYNGILKL 225


>gi|238923872|ref|YP_002937388.1| ribonuclease III [Eubacterium rectale ATCC 33656]
 gi|238875547|gb|ACR75254.1| ribonuclease III [Eubacterium rectale ATCC 33656]
          Length = 237

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 72/209 (34%), Positives = 111/209 (53%), Gaps = 6/209 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
             +  + +IGY F NR LLE+ALTHSS ++          ERLEFLGD +L ++ S  LF
Sbjct: 13  DLNEFQSKIGYTFKNRHLLEQALTHSSYANEKHMKKHSDNERLEFLGDAVLEIVSSEFLF 72

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            ++    EGEL+    S+V   T +   + LDL  ++R+             SI +D +E
Sbjct: 73  INYPQKPEGELTKLRASIVCEPTLALCTKPLDLGKYLRLGRGEDHTGGRKRKSILSDALE 132

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           ++I A+YLDGG   A  FV ++     +++ +   D+KT LQE    +      Y++   
Sbjct: 133 AVIGAIYLDGGFTNAKEFVLRFIMT-DIENKQLFYDSKTILQELIQGRHEQL-SYELIDE 190

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           SGPDHD +FTV V + G   ++G   +K+
Sbjct: 191 SGPDHDKQFTVAVLVDGERVSEGEGHTKK 219


>gi|114320503|ref|YP_742186.1| ribonuclease III [Alkalilimnicola ehrlichii MLHE-1]
 gi|122311783|sp|Q0A8Z1|RNC_ALHEH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|114226897|gb|ABI56696.1| RNAse III [Alkalilimnicola ehrlichii MLHE-1]
          Length = 228

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 79/219 (36%), Positives = 115/219 (52%), Gaps = 6/219 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            L+ R+GY F    LL++ALTH S++       ERLEFLGD IL  +I+  L++    A 
Sbjct: 7   ALQDRLGYRFRRPELLDEALTHRSVT---GPDNERLEFLGDGILNFVIADELYHRRPDAT 63

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG LS    +LV+  T +++ + LD+ + +R+     K       SI AD VE+L  A+Y
Sbjct: 64  EGVLSRLRATLVNGRTLAEIGKGLDVGTALRLGGGEMKSGGQRRKSILADAVEALFGAIY 123

Query: 128 LDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           LDGG + +   + + ++ R   L +    +D KT LQE   A     P Y+V   SG  H
Sbjct: 124 LDGGFDPSRETILRLYRDRLASLPTEAELKDPKTRLQEHLQAGRRPLPRYEVLEVSGQSH 183

Query: 186 DPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
           D  F V   +      A+G   S+R AEQ AA ++LKR 
Sbjct: 184 DQTFRVACRLQDAAVTAEGEAGSRRKAEQQAAEQMLKRL 222


>gi|240146505|ref|ZP_04745106.1| ribonuclease III [Roseburia intestinalis L1-82]
 gi|257201361|gb|EEU99645.1| ribonuclease III [Roseburia intestinalis L1-82]
 gi|291535139|emb|CBL08251.1| RNAse III [Roseburia intestinalis M50/1]
          Length = 228

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 69/209 (33%), Positives = 106/209 (50%), Gaps = 5/209 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           +   L+ RIGY F    LL +ALTHSS ++          ERLEFLGD +L ++ S  L+
Sbjct: 3   KLQELQNRIGYTFEKEGLLRQALTHSSYANEKHMKKHSDNERLEFLGDAVLEIVSSDFLY 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            ++    EG+L+    S+V   T +   RE+DL  ++ +     +       SI +D +E
Sbjct: 63  RNYPDLPEGDLTKLRASIVCEPTLALCTREMDLGDYLLLGKGENQTGGRKRKSILSDALE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           S+I A+YLDGG E A  F+ K+     ++  K   D+KT LQE     +  +  Y++   
Sbjct: 123 SVIGAIYLDGGFEPAKKFIHKFILT-DIEHKKLFYDSKTILQEVVQGNYKESLHYELISE 181

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            GPDHD +F+V   I       G   +K+
Sbjct: 182 EGPDHDKQFSVEARIGDKVIGAGTGHTKK 210


>gi|83855027|ref|ZP_00948557.1| Ribonuclease III [Sulfitobacter sp. NAS-14.1]
 gi|83941550|ref|ZP_00954012.1| Ribonuclease III [Sulfitobacter sp. EE-36]
 gi|83842870|gb|EAP82037.1| Ribonuclease III [Sulfitobacter sp. NAS-14.1]
 gi|83847370|gb|EAP85245.1| Ribonuclease III [Sulfitobacter sp. EE-36]
          Length = 228

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 89/219 (40%), Positives = 129/219 (58%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
                E RIGY FA   LL +A+TH+S+S + ++  +RLEFLGDR+LGL+++  L     
Sbjct: 6   DLRAFEGRIGYHFAKPELLNRAVTHASMSSANRDDNQRLEFLGDRVLGLVMAEALLKLDP 65

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +A EG+L+ RFN+LV  E C++VARE+D+ + +++             ++  D +E++IA
Sbjct: 66  AATEGQLAPRFNALVRKEACAEVAREIDMGAVLKLGRSEMLSGGRRKQALLGDAIEAIIA 125

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A+YLDGG + A   + + W  R ++  +  RDAKT LQEWA A+    P Y  T R GPD
Sbjct: 126 AVYLDGGFDEAKALILRLWGDRVMQVKQDARDAKTALQEWAQARGLPPPAYVQTDRQGPD 185

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           H P FT+   I   A A     SKR AEQ AA  +L + 
Sbjct: 186 HAPVFTITARIENGASAVASAPSKRQAEQAAAKTLLAQL 224


>gi|260771922|ref|ZP_05880840.1| ribonuclease III [Vibrio metschnikovii CIP 69.14]
 gi|260613214|gb|EEX38415.1| ribonuclease III [Vibrio metschnikovii CIP 69.14]
          Length = 204

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 75/204 (36%), Positives = 110/204 (53%), Gaps = 6/204 (2%)

Query: 24  EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83
           E ALTH S +  +    ERLEFLGD IL  +I+  L+  F    EG++S    +LV   T
Sbjct: 2   ELALTHRSANGKH---NERLEFLGDSILSFVIADELYRRFPKINEGDMSRMRATLVRGNT 58

Query: 84  CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143
            +++ RE  L  ++++     K       SI AD VE++I A+YLD  IE+A   +  ++
Sbjct: 59  LAELGREFGLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAIYLDSDIEMARGIILNWY 118

Query: 144 KQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA-P 200
           + R  A+K G  ++D KT LQE+   K    P Y VT   G  H+  FTV  +++G+A P
Sbjct: 119 QPRLDAIKPGVSQKDPKTRLQEFLQGKRSPLPIYIVTNIKGEAHNQEFTVSCDVAGIATP 178

Query: 201 AQGMDCSKRAAEQVAAAEVLKREG 224
             G   S+R AEQ AA   L++  
Sbjct: 179 VIGKGTSRRKAEQAAAETALEQLN 202


>gi|304404216|ref|ZP_07385878.1| ribonuclease III [Paenibacillus curdlanolyticus YK9]
 gi|304347194|gb|EFM13026.1| ribonuclease III [Paenibacillus curdlanolyticus YK9]
          Length = 232

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 111/228 (48%), Gaps = 5/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M       L++R+   F    LL +A TH+S  + ++    E  ERLEFLGD +L LL+S
Sbjct: 1   MRHDALDQLQQRLLIRFRQPRLLRQAFTHTSYVNEHRGKPIEDNERLEFLGDAVLQLLVS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  + +  EGEL+    S+V   + ++ A  L L + + +     +       ++ A
Sbjct: 61  EHLFLTYPNRPEGELTRMRASIVCEPSLARFADLLGLGACVLLGRGEEQLGGRHRPALLA 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + A+YLD G++    F+ +    +  ++G    +D K++LQE A      T EY
Sbjct: 121 DLFEAFVGAVYLDQGLDRVRLFLTERIFPQIEENGSLLVKDFKSKLQEKAQHGTLGTVEY 180

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           ++    GP HD  F V V I       G+  +K+ AEQ +A     + 
Sbjct: 181 RIAEERGPAHDREFVVEVRIGDQPYGIGVGRTKKEAEQRSAEAACLKL 228


>gi|188581484|ref|YP_001924929.1| ribonuclease III [Methylobacterium populi BJ001]
 gi|179344982|gb|ACB80394.1| Ribonuclease III [Methylobacterium populi BJ001]
          Length = 256

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 89/223 (39%), Positives = 121/223 (54%), Gaps = 2/223 (0%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNH 62
             + LE RIG+ F + +LL  ALTH S +       SY+RLEFLGDR+LGL ++  L+  
Sbjct: 23  SLAVLEARIGHVFTDPTLLPLALTHVSKAGPSGRVGSYQRLEFLGDRVLGLAVAETLYRA 82

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
              A+EGELS R   LV  ETC+ VA   ++   + +     +       +I ADV E++
Sbjct: 83  LPDAEEGELSRRLAGLVRRETCAAVAEAWEVGPHLNLGPGEIQTGGRRNQTILADVCEAI 142

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           + A++LD G E     V + ++          RDAK+ LQEWA A+    P Y+V  RSG
Sbjct: 143 LGAVFLDAGYEATRAIVQRSFRPGEDTGAPRGRDAKSALQEWAMARSLAIPVYEVVERSG 202

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           PDH P F + V +  + P  G   SKR AEQ AA  VL RE I
Sbjct: 203 PDHAPVFRIAVRVESIEPGYGEGASKRVAEQEAARAVLDRENI 245


>gi|255004592|ref|ZP_05279393.1| ribonuclease III [Anaplasma marginale str. Virginia]
          Length = 232

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 79/216 (36%), Positives = 114/216 (52%), Gaps = 1/216 (0%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            + +  GY F +  LL +ALTH S+S+    +YERLEFLGD +L + IS +L+  F    
Sbjct: 12  KIYEATGYQFRDLDLLLEALTHPSLSYKSAANYERLEFLGDAVLSMTISEMLYRLFPDDD 71

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG L+ +  +LV      ++AR + L   I +S   R    S       + +E+LI A+Y
Sbjct: 72  EGCLTRKRTALVRGSEVVEIARSIGLGELILMSGGERTCGGSDNPGTLENALEALIGAMY 131

Query: 128 LDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           +DGG E   +F+ K+W  RA        +D KT LQEW   +    P YK+  +SGP+H 
Sbjct: 132 MDGGPEAYRSFIHKHWLARAQHMSYTPPQDPKTALQEWVQGRGWAMPLYKLVSKSGPEHK 191

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           P F V V I       G   SK+ AEQ AA  +L++
Sbjct: 192 PVFAVEVSIQEHGNVLGTGSSKKLAEQEAAKLMLQK 227


>gi|300717987|ref|YP_003742790.1| ribonuclease III [Erwinia billingiae Eb661]
 gi|299063823|emb|CAX60943.1| Ribonuclease III [Erwinia billingiae Eb661]
          Length = 226

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 72/213 (33%), Positives = 113/213 (53%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVITRLQRKLGYTFTHQELLQQALTHRSASSKH---NERLEFLGDSILSYVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  QRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGYRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     + +++  R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSDIQNVEKLILEWYASRLEQISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SG+  P  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGMAEPVVGTGSSRRK 210


>gi|323491198|ref|ZP_08096384.1| ribonuclease III [Vibrio brasiliensis LMG 20546]
 gi|323314566|gb|EGA67644.1| ribonuclease III [Vibrio brasiliensis LMG 20546]
          Length = 225

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 75/213 (35%), Positives = 115/213 (53%), Gaps = 7/213 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M++   + LEK++GY F +  L+  ALTH S    + +  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNS-PIAKLEKKLGYQFNDAELISLALTHRSA---HGKHNERLEFLGDSILSFVIADDLY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ RE +L   +++     K       SI AD VE
Sbjct: 57  HRFPKVNEGDMSRMRATLVRGNTLAELGREFELGDHLKLGPGELKSGGFRRDSILADAVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD  IEV    +  ++K R  A+K G  ++D KT LQE+   +    P Y VT
Sbjct: 117 AIIGAIYLDSDIEVVRGIILSWYKTRLDAIKPGVSQKDPKTRLQEFLQGRRKPLPAYTVT 176

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRA 210
              G  H+  FTV  +++G+  P  G   S+R 
Sbjct: 177 NIKGEAHNQEFTVSCDVAGIGQPVIGKGTSRRK 209


>gi|291524528|emb|CBK90115.1| RNAse III [Eubacterium rectale DSM 17629]
 gi|291527954|emb|CBK93540.1| RNAse III [Eubacterium rectale M104/1]
          Length = 227

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 72/209 (34%), Positives = 111/209 (53%), Gaps = 6/209 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
             +  + +IGY F NR LLE+ALTHSS ++          ERLEFLGD +L ++ S  LF
Sbjct: 3   DLNEFQSKIGYTFKNRHLLEQALTHSSYANEKHMKKHSDNERLEFLGDAVLEIVSSEFLF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            ++    EGEL+    S+V   T +   + LDL  ++R+             SI +D +E
Sbjct: 63  INYPQKPEGELTKLRASIVCEPTLALCTKPLDLGKYLRLGRGEDHTGGRKRKSILSDALE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           ++I A+YLDGG   A  FV ++     +++ +   D+KT LQE    +      Y++   
Sbjct: 123 AVIGAIYLDGGFTNAKEFVLRFIMT-DIENKQLFYDSKTILQELIQGRHEQL-SYELIDE 180

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           SGPDHD +FTV V + G   ++G   +K+
Sbjct: 181 SGPDHDKQFTVAVLVDGERVSEGEGHTKK 209


>gi|116515099|ref|YP_802728.1| hypothetical protein BCc_163 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|122285505|sp|Q057R4|RNC_BUCCC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|116256953|gb|ABJ90635.1| ribonuclease III [Buchnera aphidicola str. Cc (Cinara cedri)]
          Length = 226

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 118/226 (52%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +    L+K IGY F N +LL+ ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVMKKLQKFIGYTFTNITLLKHALTHRSASSQH---NERLEFLGDSILSFIIAKALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           +HF    EG +S    +LV   T +++A E  L  ++++    +K       SI A+ +E
Sbjct: 58  HHFPKMNEGGMSRMRATLVRGNTLAEIATEFSLGKYLQLGQGEKKSGGFKRESILANAIE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++IA+++LD  I      +  ++K R   +     ++D KT LQE+  +K    P Y + 
Sbjct: 118 AIIASIFLDSNIYTVERIILYWYKNRFKKMNPTGTKKDPKTRLQEYLQSKHFSLPIYSIG 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
              G  H+  FT+  +I GL     G+  S+R AEQ AA   L R 
Sbjct: 178 QIYGEAHNQIFTIYCKIDGLSELLIGIGASRRKAEQDAAQNALIRL 223


>gi|242240203|ref|YP_002988384.1| ribonuclease III [Dickeya dadantii Ech703]
 gi|242132260|gb|ACS86562.1| ribonuclease III [Dickeya dadantii Ech703]
          Length = 226

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 74/213 (34%), Positives = 112/213 (52%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L+K++GY F    LL +ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPILINRLQKKLGYTFQQYDLLLQALTHRSASSKH---NERLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     + K+++ R  A+  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSDIQAVERLILKWYQSRLDAISPGDKQKDPKTRLQEFLQGRHLPLPTYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SG   P  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGFSEPVVGTGSSRRK 210


>gi|167623017|ref|YP_001673311.1| ribonuclease III [Shewanella halifaxensis HAW-EB4]
 gi|189043349|sp|B0TIV7|RNC_SHEHH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|167353039|gb|ABZ75652.1| Ribonuclease III [Shewanella halifaxensis HAW-EB4]
          Length = 225

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 81/224 (36%), Positives = 123/224 (54%), Gaps = 6/224 (2%)

Query: 1   MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  ++    L + +GY F  ++ L++ALTH S S+ +    ERLEFLGD IL ++IS  L
Sbjct: 1   MEPIKNIPRLCRTLGYEFTEQAFLDQALTHRSASNKH---NERLEFLGDSILSIVISDAL 57

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           ++ F +A EG+LS    +LV  +  +++A E  L  ++++     K       SI AD V
Sbjct: 58  YHQFPTATEGDLSRMRATLVCGKMLAEIAIEFKLGDYLKLGPGELKSGGFRRESILADAV 117

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           E++I A+YLD  IE   + V K+++ R  +     ++D KT LQE         P YKV 
Sbjct: 118 EAIIGAIYLDSEIEKCRSLVLKWYESRLKVIEPINQKDPKTLLQEHLQKFRKPLPVYKVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLK 221
              G  H+  FTV   +  L+ A  G+  S+R AEQ AAA+VL+
Sbjct: 178 HTEGDAHEQTFTVECIVEDLSQAVVGVASSRRKAEQSAAAQVLE 221


>gi|28199176|ref|NP_779490.1| ribonuclease III [Xylella fastidiosa Temecula1]
 gi|182681907|ref|YP_001830067.1| ribonuclease III [Xylella fastidiosa M23]
 gi|32129967|sp|Q87C06|RNC_XYLFT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|238691044|sp|B2I604|RNC_XYLF2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|28057282|gb|AAO29139.1| ribonuclease III [Xylella fastidiosa Temecula1]
 gi|182632017|gb|ACB92793.1| Ribonuclease III [Xylella fastidiosa M23]
 gi|307578162|gb|ADN62131.1| ribonuclease III [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 227

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 80/226 (35%), Positives = 116/226 (51%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M + + S  ++RIGY F + SLL +AL H S    +    ERLEFLGD ++ LLI+  LF
Sbjct: 1   MISSKASDYQQRIGYVFTDPSLLLQALRHRSAGTPH---NERLEFLGDSVVNLLIAEALF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             +  A EG L+   + LV   + + +AR + L   + +     K       SI AD VE
Sbjct: 58  QRWPRADEGALTRARSELVRETSLASIARTMQLGEQLILGPGELKSGGHRRDSILADAVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++IAA+YLD  +    T V  +++    AL  GK  +D KT LQEW  A+    P Y++ 
Sbjct: 118 AVIAAIYLDADLATCRTVVLPWFETALTALPVGKPEKDPKTRLQEWLQARQWSLPVYELI 177

Query: 179 FRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223
           F SG  H   F V   +  L    +G   S+R AEQ AA+  + + 
Sbjct: 178 FESGDPHTKHFRVSCTLGELKLRTEGEGSSRRLAEQDAASHAIDQL 223


>gi|30250251|ref|NP_842321.1| rnc; ribonuclease III (RNAse III) protein [Nitrosomonas europaea
           ATCC 19718]
 gi|81436192|sp|Q820I0|RNC_NITEU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|30181046|emb|CAD86236.1| rnc; ribonuclease III (RNAse III) protein [Nitrosomonas europaea
           ATCC 19718]
          Length = 245

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 108/224 (48%), Gaps = 6/224 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           +    Y+   +++GY F    LL +ALTH S+      + ER EFLGD +L   +STLLF
Sbjct: 19  LKGRDYAVFLQKLGYTFKQPDLLREALTHRSLGFP---NNERFEFLGDSVLNCAVSTLLF 75

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F S  EG+L+    + V+ +   ++A  L +   I +    RK       SI A+ VE
Sbjct: 76  KRFPSLPEGDLTRLRANFVNQQALHRLASALGIGELILLGEGERKSGGHHRPSILANAVE 135

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YL+ G  V    +   ++   R L      +D+KT LQE+  ++    PEY V 
Sbjct: 136 AIIGAIYLESGFAVVEQVIVALYEPLIRQLDPDTSGKDSKTLLQEYLQSRKIALPEYSVL 195

Query: 179 FRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221
              G  H   F V   I G     +G   S+R AEQ AA +  +
Sbjct: 196 LAQGDPHAQVFHVECVIPGFGIRTRGEGTSRRRAEQEAARQAYE 239


>gi|94989948|ref|YP_598048.1| ribonuclease III [Streptococcus pyogenes MGAS10270]
 gi|189043365|sp|Q1JI19|RNC_STRPD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|94543456|gb|ABF33504.1| Ribonuclease III [Streptococcus pyogenes MGAS10270]
          Length = 230

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 114/226 (50%), Gaps = 9/226 (3%)

Query: 7   STLEKRI----GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58
             LE+ +       F + +LLE A TH+S ++ ++       ERLEFLGD +L L+IS  
Sbjct: 2   KQLEELLSTSFDIQFNDLTLLETAFTHTSYANEHRLLNVSHNERLEFLGDAVLQLIISEY 61

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF  +    EG++S   + +V  E+ +  +R     ++I++     K       +I  D+
Sbjct: 62  LFAKYPKKTEGDMSKLRSMIVREESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDTILGDL 121

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKV 177
            E+ + AL LD GI+    F+ +    +  K   +  +D KT LQE+  AK  V  +Y+V
Sbjct: 122 FEAFLGALLLDKGIDAVRRFLKQVMIPQVEKGNFERVKDYKTCLQEFLQAKGDVVIDYQV 181

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               GP H  +F V + ++G   ++G+  SK+ AEQ AA   L + 
Sbjct: 182 ISEKGPAHAKQFEVSIVVNGAVLSKGLGKSKKLAEQDAAKNALAQL 227


>gi|297584006|ref|YP_003699786.1| ribonuclease III [Bacillus selenitireducens MLS10]
 gi|297142463|gb|ADH99220.1| ribonuclease III [Bacillus selenitireducens MLS10]
          Length = 261

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 111/227 (48%), Gaps = 5/227 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58
             +Y    K +   + + ++  +A THSS  + ++    +  ERLEFLGD +L L IS  
Sbjct: 26  KAKYKQFLKTLHVPYQDDNVFIQAFTHSSYVNEHRIRPHDDNERLEFLGDAVLELAISQY 85

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF  F+   EGE++    ++V   + +++A  L+   ++ +             ++ ADV
Sbjct: 86  LFKLFEQMSEGEMTKLRAAIVCEPSLAKLADSLEFGDYVLLGKGEEMTGGRKRPALLADV 145

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKV 177
            E+ I ALY+D G+E    F+++Y   +    S     D K++LQE+   +     +Y++
Sbjct: 146 FEAFIGALYVDLGMEAVYDFLERYVYPKIHDGSFSHMMDFKSQLQEFIQRENQGQVQYRI 205

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               GP H   F   V +       G+  SK+ AEQ+AA E LK+ G
Sbjct: 206 VEEKGPAHAREFVSEVMLDDDQLGTGVGKSKKEAEQMAAQEALKKLG 252


>gi|327441090|dbj|BAK17455.1| dsRNA-specific ribonuclease [Solibacillus silvestris StLB046]
          Length = 253

 Score =  255 bits (653), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 68/221 (30%), Positives = 103/221 (46%), Gaps = 5/221 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60
           ++  LE  +   F N+ LL +A THSS  + ++       ERLEFLGD +L L +S  LF
Sbjct: 22  QFEILENEMNIHFQNKDLLYQAFTHSSYVNEHRRKLFTDNERLEFLGDAVLELSVSKYLF 81

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EGEL+    S+V   +    A EL+   F+ +             ++ ADV E
Sbjct: 82  EKFPHMSEGELTKLRASIVCEPSLVVFANELNFGQFVLLGKGEELTGGRERPALLADVFE 141

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           S + ALYLD G+EV   F+++    +  + +     D K++LQE           Y++  
Sbjct: 142 SFVGALYLDQGLEVVVAFLERVVFPKVEVGAFSHVMDFKSQLQEIIQQTNNGLLNYEIVD 201

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             GP H+  F   V ++      G   SK+ AEQ AA   +
Sbjct: 202 EKGPAHNRTFVSRVLLNSQELGIGRGKSKKEAEQQAAQSAM 242


>gi|152993835|ref|YP_001359556.1| ribonuclease III [Sulfurovum sp. NBC37-1]
 gi|189043369|sp|A6QCJ0|RNC_SULNB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|151425696|dbj|BAF73199.1| ribonuclease III [Sulfurovum sp. NBC37-1]
          Length = 223

 Score =  255 bits (653), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 77/221 (34%), Positives = 115/221 (52%), Gaps = 4/221 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            YS LEKR+ Y F ++ L+ +ALTH S    Y  + ERLEFLGD +L L++   LF  F 
Sbjct: 3   DYSQLEKRLNYTFKDKQLIIEALTHKSYKKPY--NNERLEFLGDAVLDLIVGEYLFKKFP 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            + EG LS    SLV+    + +AR++DL S+I +S     +      S+ ++  E++I 
Sbjct: 61  KSDEGILSKIRASLVNESGFTLLARKIDLGSYIYLSLAEENNNGRDKPSLLSNAFEAIIG 120

Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YL+ G++ A     K  ++    +      +D KT LQE   A   VTP Y++   SG
Sbjct: 121 AVYLEAGLDTAKEISIKLLEECHPKIDLQSLSKDYKTALQELTQATHAVTPGYEMLGSSG 180

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           PDH   F + V +     A     SK+ A+Q AA   L+  
Sbjct: 181 PDHKKEFEIAVTLDNKTIATAKGKSKKDAQQKAAKIALEAL 221


>gi|317050765|ref|YP_004111881.1| ribonuclease III [Desulfurispirillum indicum S5]
 gi|316945849|gb|ADU65325.1| ribonuclease III [Desulfurispirillum indicum S5]
          Length = 247

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 84/228 (36%), Positives = 123/228 (53%), Gaps = 6/228 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTL 58
           S  R + LE+R+GY F  + LL  ALTH S  HS +   E+ ERLEFLGD +LGL+IS  
Sbjct: 7   SQERIAPLEERLGYVFMRKELLHTALTHRSFFHSNRKSAENNERLEFLGDSVLGLIISHY 66

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQAD 117
           L   F +  EG+LS   + +V+ +T S+VARE + L  ++ +             SI AD
Sbjct: 67  LLESFPAQSEGKLSKIRSFIVNEKTLSRVAREKIQLGRYLFIGKGEENTGGRNKASILAD 126

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEY 175
            +E+++AA+YLDGG+  A   + +   +    +      RD KTELQE +     + PEY
Sbjct: 127 AMEAVVAAIYLDGGLNAARNIILELMSEEIESTVFSNRHRDYKTELQELSQGSLSLAPEY 186

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +V    GPDH   F V + +       G   SK++AEQ AA   +++ 
Sbjct: 187 RVEREWGPDHQKHFAVSLYLHDQVYGHGEGTSKKSAEQKAARAAMEKL 234


>gi|160880576|ref|YP_001559544.1| ribonuclease III [Clostridium phytofermentans ISDg]
 gi|160429242|gb|ABX42805.1| Ribonuclease III [Clostridium phytofermentans ISDg]
          Length = 235

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 117/222 (52%), Gaps = 5/222 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
            +  E++I YAF    LL +ALTHSS ++  +     + ERLEFLGD +L L  S  LF 
Sbjct: 10  LAEFEQKIDYAFTEPGLLRQALTHSSFANEKRLSKLANNERLEFLGDAVLELTTSEWLFE 69

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
                 EG+L+    S+V  +T +  AREL L +++ +             SI +D +ES
Sbjct: 70  KHPKMPEGDLTKLRASMVCEQTLALCARELHLGNYVFLGKGEDTTGGRDRDSILSDALES 129

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +I A+YLDGG   A  F+  Y     ++  K   D+KT LQE   +++     Y++   +
Sbjct: 130 IIGAIYLDGGFANAKEFISNYILS-DIEHKKLFYDSKTILQEIVQSEYKKHLSYELLQET 188

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           GPDH+ +FTVV ++   +   G   +K+AAEQ AA   + + 
Sbjct: 189 GPDHNKKFTVVAKMDEESLEIGTGRTKKAAEQEAAYRSILQL 230


>gi|256821980|ref|YP_003145943.1| ribonuclease III [Kangiella koreensis DSM 16069]
 gi|256795519|gb|ACV26175.1| ribonuclease III [Kangiella koreensis DSM 16069]
          Length = 229

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 79/222 (35%), Positives = 119/222 (53%), Gaps = 6/222 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
             L    L  R+GY F++ SLL+ ALTH S ++ +    ERLEFLGD ILG++I+  LF 
Sbjct: 4   KKLLIERLCNRLGYQFSDPSLLKLALTHRSGANKH---NERLEFLGDAILGMVIAEYLFT 60

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           H   A EG+L+    SLV  +T +++A+E++L   + +     K       SI AD +E+
Sbjct: 61  HLKKADEGQLTRLRASLVKGKTLAEIAKEIELGECLYLGEGELKSGGFRRASILADALEA 120

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           +I A+Y D G EVA T +   +++R   +      +D KTELQEW  ++    P+Y++  
Sbjct: 121 IIGAVYQDSGFEVAKTIILTLYQKRLQNIDLKAVHKDPKTELQEWLQSRKLPLPDYELLK 180

Query: 180 RSGPDHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVL 220
            +G  H   F V   +        G   S+R AEQ AA + L
Sbjct: 181 VTGDPHKQTFDVACILAEKKVRTHGSGSSRRNAEQQAAEKAL 222


>gi|26988166|ref|NP_743591.1| ribonuclease III [Pseudomonas putida KT2440]
 gi|148549494|ref|YP_001269596.1| ribonuclease III [Pseudomonas putida F1]
 gi|37999409|sp|Q88MY5|RNC_PSEPK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043332|sp|A5W8F2|RNC_PSEP1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|24982900|gb|AAN67055.1|AE016334_4 ribonuclease III [Pseudomonas putida KT2440]
 gi|148513552|gb|ABQ80412.1| RNAse III [Pseudomonas putida F1]
 gi|313500339|gb|ADR61705.1| Rnc [Pseudomonas putida BIRD-1]
          Length = 229

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 83/232 (35%), Positives = 118/232 (50%), Gaps = 11/232 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           MSA   + LE+++GY F N+  +  ALTH S +     + ERLEFLGD IL  +    LF
Sbjct: 1   MSA-SLAGLERKLGYTFKNQDQMLLALTHRSYA---GRNNERLEFLGDAILNFVAGEALF 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A+EG+LS     LV  ET +++AR  DL  ++R+ S   K       SI AD +E
Sbjct: 57  ERFPQAREGQLSRLRARLVKGETLARLARGFDLGDYLRLGSGELKSGGFRRESILADALE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI A+YLD  ++ A   +  +       L      +D KT LQE+  ++    P Y+V 
Sbjct: 117 ALIGAIYLDADMDTARERILAWLADEFEGLTLVDTNKDPKTRLQEFLQSRSCELPRYEVV 176

Query: 179 FRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
              G  H   F V  E+   +  +  QG+  S+R AEQVAAA  L   G+  
Sbjct: 177 DIQGEPHCRTFFVECEVVLLNNKSRGQGV--SRRIAEQVAAASALIALGVEN 226


>gi|254293934|ref|YP_003059957.1| ribonuclease III [Hirschia baltica ATCC 49814]
 gi|254042465|gb|ACT59260.1| ribonuclease III [Hirschia baltica ATCC 49814]
          Length = 255

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 84/220 (38%), Positives = 130/220 (59%), Gaps = 2/220 (0%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLFNHFD 64
           +T+++  G  F + SLL++A TH+S           ERLEFLGDR+LGL+ ++ L   F+
Sbjct: 33  ATIQEIAGIKFKDVSLLDRAFTHTSAVPGEAADWSNERLEFLGDRVLGLVAASQLITRFE 92

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             +EG L+ R N+LVS +TC+++A E++L  ++ + +       +   S+ A+V E+LI 
Sbjct: 93  KEREGGLAPRLNALVSRDTCAKIAAEINLGQYLILDASESSAGGTTKPSLLANVTEALIG 152

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A+YLD G+  +  F+ KYWK+         RD K+ LQEWA       P Y+   R+GPD
Sbjct: 153 AIYLDAGLAASERFIVKYWKEYFKTLTDVPRDPKSALQEWAQGDGRPAPNYENIDRTGPD 212

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           H P FTV V + G+ PA+G   SK+ A++ AA+ +L   G
Sbjct: 213 HAPVFTVEVRVEGVRPAKGEGSSKQEAQRAAASAMLNNVG 252


>gi|92113755|ref|YP_573683.1| ribonuclease III [Chromohalobacter salexigens DSM 3043]
 gi|91796845|gb|ABE58984.1| RNAse III [Chromohalobacter salexigens DSM 3043]
          Length = 226

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 83/217 (38%), Positives = 117/217 (53%), Gaps = 6/217 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            L +RIGY F + S LE ALTH S      ++ ERLEFLGD I+  +I   LF  F  A+
Sbjct: 3   ALSRRIGYQFRDTSRLELALTHRSYG---GKNNERLEFLGDSIVNFVIGEALFQRFPQAR 59

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG+LS     LV  +T +++ARE +L   +R+ S   K       SI AD VE+LI A+Y
Sbjct: 60  EGQLSRLRARLVKGQTLAELAREFELGECLRLGSGEMKSGGYRRDSILADGVEALIGAIY 119

Query: 128 LDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           LD G++VA   V  ++  R  A+     ++D KT LQE+  ++    P Y+V    G  H
Sbjct: 120 LDAGMDVAKARVLSWYATRLEAIDLQDNQKDPKTRLQEFLQSRQAALPRYEVVSVEGEAH 179

Query: 186 DPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221
              FT+   +  L     G+  S+R AEQ AA + L+
Sbjct: 180 AQVFTIECHVEMLEDHTLGVGSSRRHAEQQAAEKALE 216


>gi|254468787|ref|ZP_05082193.1| ribonuclease III [beta proteobacterium KB13]
 gi|207087597|gb|EDZ64880.1| ribonuclease III [beta proteobacterium KB13]
          Length = 228

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 84/223 (37%), Positives = 118/223 (52%), Gaps = 6/223 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M  L    LE  + Y F + +LL+K+LTH S      E+ ERLEFLGD IL   I+  LF
Sbjct: 1   MDDLIVKQLEDLLQYKFKDINLLQKSLTHRSFD---GENNERLEFLGDSILNFTIAEALF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F +  EG+LS    SLV + T +++A ++ L  FI +     K       SI AD  E
Sbjct: 58  IKFPNIPEGDLSRLRASLVKSGTLAEIAVKIKLGDFIFLGEGELKSAGWRRPSILADTFE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I ALYLDGG+  A TF+ +Y++     +   K  +D KT LQE   +K  + P+Y+V 
Sbjct: 118 AIIGALYLDGGLRPAQTFIHQYFQDWLSEINPAKVDKDPKTSLQELLQSKKLMLPKYEVA 177

Query: 179 FRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVL 220
              G  H   F V   I+ L+   +    S+RAAEQ AA+  L
Sbjct: 178 DIKGEAHAQEFIVKCNIAQLSITTEASGSSRRAAEQEAASIAL 220


>gi|167035367|ref|YP_001670598.1| ribonuclease III [Pseudomonas putida GB-1]
 gi|189043333|sp|B0KV27|RNC_PSEPG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|166861855|gb|ABZ00263.1| Ribonuclease III [Pseudomonas putida GB-1]
          Length = 229

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 83/232 (35%), Positives = 118/232 (50%), Gaps = 11/232 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+A   + LE+++GY F N+  +  ALTH S +     + ERLEFLGD IL  +    LF
Sbjct: 1   MTA-SLARLERKLGYTFKNQDQMLLALTHRSYA---GRNNERLEFLGDAILNFVAGEALF 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A+EG+LS     LV  ET +++AR  DL  ++R+ S   K       SI AD +E
Sbjct: 57  ERFPQAREGQLSRLRARLVKGETLARLARGFDLGEYLRLGSGELKSGGFRRESILADALE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI A+YLD  ++ A   V  +       L      +D KT LQE+  ++    P Y+V 
Sbjct: 117 ALIGAIYLDADMDTARERVLAWLADEFEGLTLVDTNKDPKTRLQEFLQSRSCELPRYEVV 176

Query: 179 FRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
              G  H   F V  E+   +  +  QG+  S+R AEQVAAA  L   G+  
Sbjct: 177 DIQGEPHCRTFFVECEVVLLNNKSRGQGV--SRRIAEQVAAASALIALGVEN 226


>gi|224532223|ref|ZP_03672855.1| ribonuclease III [Borrelia valaisiana VS116]
 gi|224511688|gb|EEF82094.1| ribonuclease III [Borrelia valaisiana VS116]
          Length = 245

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 116/226 (51%), Gaps = 5/226 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLL 59
             + S   + +   F N  LL  AL+HSS S+       + ERLEFLGD +L L+I+  L
Sbjct: 15  KAQLSEFLENLSIDFNNFDLLNTALSHSSYSNELDQKSGNNERLEFLGDSVLNLIITDHL 74

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  + +  EGELS   + +VS ++ S +ARE+DL S+I +      +       I AD +
Sbjct: 75  YKTYPNKSEGELSKARSYIVSEDSLSNIAREIDLGSYILLGRGEESNDGRNKKGILADAI 134

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E+ + A+YLD G  VA  FV   +    R + +    +D K+ LQE+   K+ ++P YK+
Sbjct: 135 EAFVGAIYLDSGFSVATEFVVGLFDMYIRLMFNRGDFKDYKSLLQEYIQKKYKISPSYKL 194

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               GPDHD  F V + +     + G   SK+ AE  AA   LK  
Sbjct: 195 DKEIGPDHDKVFCVELYVGEKFISNGKGKSKKEAEMRAAEVALKAM 240


>gi|119897933|ref|YP_933146.1| ribonuclease III [Azoarcus sp. BH72]
 gi|119670346|emb|CAL94259.1| putative Ribonuclease III [Azoarcus sp. BH72]
          Length = 223

 Score =  255 bits (652), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 106/223 (47%), Gaps = 6/223 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +    L++ +G+ FA   LL++ALTH S     Q + ERLEFLGD IL  + S  L+  F
Sbjct: 1   MSVEHLQRALGHQFAQPELLQQALTHRSFG---QPNNERLEFLGDSILNCVTSIALYERF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
              +EGELS     LV  +   ++A +L L   +R+     K       SI AD +E++ 
Sbjct: 58  GGLREGELSRLRAGLVCQDALHRIAVQLKLGDCLRLGEGELKSGGFRRPSILADALEAIF 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA++LD     A   +D+ +      ++ G   +D KT LQEW   +    P Y +   +
Sbjct: 118 AAVFLDSDFAGAKAVIDRLYAPLLAEVEPGAPAKDPKTALQEWLQGRKSPLPTYVMVQVT 177

Query: 182 GPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
           G  H   F V  E+        G   S+R AEQ AA   L + 
Sbjct: 178 GEAHAQEFEVACEVEKHKVRTVGRGTSRRIAEQRAAELALAQL 220


>gi|218530503|ref|YP_002421319.1| ribonuclease III [Methylobacterium chloromethanicum CM4]
 gi|218522806|gb|ACK83391.1| Ribonuclease III [Methylobacterium chloromethanicum CM4]
          Length = 256

 Score =  255 bits (652), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 91/223 (40%), Positives = 124/223 (55%), Gaps = 2/223 (0%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNH 62
             + LE RIG+ FA+ +LL  ALTH S +       SY+RLEFLGDR+LGL ++  L+  
Sbjct: 23  SLAVLEARIGHVFADPTLLPLALTHVSKAGQSGRVGSYQRLEFLGDRVLGLAVAETLYKA 82

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
              A+EGELS R   LV  ETC+ VA   ++   + +     +       +I ADV E++
Sbjct: 83  LPGAEEGELSRRLAGLVRRETCAVVAEAWEVGPHLNLGPGEIRTGGRRNQTILADVCEAI 142

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           + A++LD G E     V + ++     +    RDAK+ LQEWA A+    P Y+V  RSG
Sbjct: 143 LGAVFLDAGYEATRAIVQRAFRPGEETAAPRGRDAKSALQEWAMARSLAIPVYEVVERSG 202

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           PDH P F +   + G+ P  G   SKR AEQ AA  VL REGI
Sbjct: 203 PDHAPVFRIAARVEGIEPGYGEGASKRVAEQEAARAVLAREGI 245


>gi|254474637|ref|ZP_05088023.1| ribonuclease III [Ruegeria sp. R11]
 gi|214028880|gb|EEB69715.1| ribonuclease III [Ruegeria sp. R11]
          Length = 222

 Score =  255 bits (652), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 87/217 (40%), Positives = 126/217 (58%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
              E RIGY F   +LL +ALTH+S+S   ++  +RLEFLGDR+LGL+++T L      A
Sbjct: 2   HAFEARIGYQFTEPALLVRALTHASVSSPNRKDNQRLEFLGDRVLGLVMATALLETDKDA 61

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+L+ RFN+LV  ETC+ VAR++D+ S +++             ++  D +E++IAA+
Sbjct: 62  SEGQLAPRFNALVRKETCADVARQIDVGSVLKLGRSETLSGGRRKMALLGDAMEAVIAAV 121

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           Y DGG + A   + + W  R  +     RDAKT LQE+A A+    P Y +  R GPDH 
Sbjct: 122 YKDGGFDAAQELILRLWGDRIGRVEADARDAKTTLQEFAQARGEQPPTYVLVERKGPDHQ 181

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           P FT+ V++      +    SKR AEQ AA  +L R 
Sbjct: 182 PEFTISVQLQDGTEGRATAGSKRQAEQAAAKSLLARL 218


>gi|216263528|ref|ZP_03435523.1| ribonuclease III [Borrelia afzelii ACA-1]
 gi|215980372|gb|EEC21193.1| ribonuclease III [Borrelia afzelii ACA-1]
          Length = 245

 Score =  255 bits (652), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 117/226 (51%), Gaps = 5/226 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLL 59
             + S   + +   F N  LL  AL+HSS S+      ++ ERLEFLGD +L L+I+  L
Sbjct: 15  KAQLSEFLENLSIDFNNFDLLNTALSHSSYSNELDQKSDNNERLEFLGDSVLNLIITDHL 74

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  + +  EGELS   + +VS ++ S +ARE+DL S+I +      +       I AD +
Sbjct: 75  YKTYPNKSEGELSKARSYIVSEDSLSSIAREIDLGSYILLGRGEESNDGRNKKGILADAI 134

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E+ + A+YLD G  +A  FV   +    R + +    +D K+ LQE+   K+ ++P YK+
Sbjct: 135 EAFVGAIYLDSGFSIATEFVVGLFDMYIRLMFNRGDFKDYKSLLQEYVQKKYKISPNYKL 194

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               GPDHD  F V + +     + G   SK+ AE  AA   LK  
Sbjct: 195 DKEIGPDHDKVFCVELYVGEKFISNGKGKSKKEAEMRAAEVALKAM 240


>gi|54297783|ref|YP_124152.1| ribonuclease III [Legionella pneumophila str. Paris]
 gi|148359410|ref|YP_001250617.1| ribonuclease III [Legionella pneumophila str. Corby]
 gi|296107456|ref|YP_003619157.1| ribonuclease III [Legionella pneumophila 2300/99 Alcoy]
 gi|81370372|sp|Q5X446|RNC_LEGPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043325|sp|A5ID21|RNC_LEGPC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|53751568|emb|CAH12986.1| hypothetical protein lpp1834 [Legionella pneumophila str. Paris]
 gi|148281183|gb|ABQ55271.1| ribonuclease III [Legionella pneumophila str. Corby]
 gi|295649358|gb|ADG25205.1| ribonuclease III [Legionella pneumophila 2300/99 Alcoy]
          Length = 224

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 79/224 (35%), Positives = 119/224 (53%), Gaps = 6/224 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            +    L +R+ Y F N + L++ALTH S      ++YER EFLGD IL  +I+  LFN 
Sbjct: 2   KINLERLCRRLNYHFNNIAYLKQALTHCSAG---SDNYERFEFLGDSILSFVIANELFNR 58

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG+LS   + LV  E  +++ARE+ L  ++ +     +      TSI AD +E++
Sbjct: 59  FPLHSEGQLSRLRSFLVKGEMLAEIAREIGLGDYLFLGQGELRSGGFRRTSILADALEAI 118

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFR 180
           +AA+YLDGG+  A   +   +  R          +DAKT+LQE+  A     PEY +T  
Sbjct: 119 LAAIYLDGGMTAAKQIILMLYSSRLDDPDLNHCLKDAKTQLQEFLQASKFALPEYVLTKI 178

Query: 181 SGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
            G +H   F V   I G+   A G   ++R AEQ+AA  +L++ 
Sbjct: 179 EGDEHAQIFHVTCTIEGVSQVAYGTGPNRRKAEQLAAKAMLEQL 222


>gi|315179118|gb|ADT86032.1| ribonuclease III [Vibrio furnissii NCTC 11218]
          Length = 202

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 76/201 (37%), Positives = 110/201 (54%), Gaps = 6/201 (2%)

Query: 26  ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85
           ALTH S +  +    ERLEFLGD IL  +I+  L++ F    EG++S    +LV   T +
Sbjct: 2   ALTHRSANGKH---NERLEFLGDSILSFVIADDLYHRFPKVNEGDMSRMRATLVRGNTLA 58

Query: 86  QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145
           ++ RE DL  ++++     K       SI AD VE++I A+YLD  IEVA   V  +++ 
Sbjct: 59  ELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGAIYLDSDIEVARATVLSWYQS 118

Query: 146 R--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA-PAQ 202
           R  A+K G  ++D KT LQE+   +    P Y VT   G  H+  FTV  +I+G+  P  
Sbjct: 119 RLEAIKPGVSQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEAHNQEFTVACDIAGIGAPVI 178

Query: 203 GMDCSKRAAEQVAAAEVLKRE 223
           G   S+R AEQ AA   L++ 
Sbjct: 179 GKGTSRRKAEQAAAETALEQL 199


>gi|251797476|ref|YP_003012207.1| ribonuclease III [Paenibacillus sp. JDR-2]
 gi|247545102|gb|ACT02121.1| ribonuclease III [Paenibacillus sp. JDR-2]
          Length = 231

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 114/227 (50%), Gaps = 6/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M     + L+ R+   F    LL++A TH+S  + ++    E  ERLEFLGD +L LL+S
Sbjct: 1   MKRDSINELQTRLQLRFKQLKLLKQAFTHTSYVNEHKHGTIEHNERLEFLGDAVLQLLVS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  + +  EGEL+    S+V   + +Q A  L+L + I++     +       ++ A
Sbjct: 61  EYLFAAYPNRPEGELTRMRASVVCEPSLAQFAERLELGAHIQLGRGEEQLGGRQRPALLA 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPE 174
           D+ E+ + A++LD GIE    F++ +      +   G   +D K++LQE A  K     E
Sbjct: 121 DLFEAFVGAIFLDAGIERTRAFLETHMFPYIESNDYGLLVKDFKSKLQERAQHKGLGAVE 180

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           Y++    GP HD  F V V I  +    G   +K+ AEQ AAA   +
Sbjct: 181 YRIMEERGPAHDREFVVEVCIGEIPYGNGSGRTKKEAEQRAAAVAWQ 227


>gi|269958484|ref|YP_003328271.1| ribonuclease 3 [Anaplasma centrale str. Israel]
 gi|269848313|gb|ACZ48957.1| ribonuclease 3 [Anaplasma centrale str. Israel]
          Length = 249

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 79/216 (36%), Positives = 115/216 (53%), Gaps = 1/216 (0%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            + +  GY F +  LL ++LTH S+S     +YERLEFLGD +L + +S +L+  F    
Sbjct: 16  RVYEVTGYRFRDLDLLLESLTHPSLSRESAANYERLEFLGDAVLSMAVSEMLYRLFPDDD 75

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG L+ +  +LV      ++AR + L   I +SS       S       + +E+LI A+Y
Sbjct: 76  EGCLTQKRTALVRGSEVVEIARSIGLGGLILMSSGEMSCGGSDNPGTLENALEALIGAMY 135

Query: 128 LDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           +DG  E    F+ ++W  RA + S    +D KT LQEW  ++    P YK+  +SGP+H 
Sbjct: 136 IDGSSEDYKNFIREHWFSRAQRMSSAPPQDPKTALQEWVQSRGWTVPLYKLVSKSGPEHK 195

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           P F V V I G     G   SK+ AEQ AA  +LKR
Sbjct: 196 PVFAVEVSIQGHGSILGTGSSKKLAEQEAAKLMLKR 231


>gi|331269661|ref|YP_004396153.1| ribonuclease III [Clostridium botulinum BKT015925]
 gi|329126211|gb|AEB76156.1| Ribonuclease III [Clostridium botulinum BKT015925]
          Length = 236

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 78/220 (35%), Positives = 115/220 (52%), Gaps = 4/220 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHF 63
            + +E ++   F + +LL+ ALTHSS  +  +   S ERLEFLGD IL L IS LL+N +
Sbjct: 9   LNEVENKLNVKFNDINLLDTALTHSSFVNENKNIYSNERLEFLGDSILQLCISELLYNKY 68

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
           +   EG L+ +   +V   +  +VA+E ++  +I +S           TSI +D VE++I
Sbjct: 69  EQEPEGFLTKKRALIVCGNSLHEVAKEWNIGKYINMSKGEEMTGGRTRTSILSDCVEAII 128

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           A++YLD G EVA  F+   + +   K+   +   D KT+LQE          EY++    
Sbjct: 129 ASIYLDQGYEVAKKFIIDNFNEIIQKANSDQIILDYKTKLQETIQKFGDYNIEYRLVSFD 188

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           GP H  +F   V I       G   SK+ AEQ AA E LK
Sbjct: 189 GPPHRRKFITEVLIDSEVKGVGEGYSKKEAEQNAAKEALK 228


>gi|152971423|ref|YP_001336532.1| ribonuclease III [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|206580271|ref|YP_002237090.1| ribonuclease III [Klebsiella pneumoniae 342]
 gi|288934052|ref|YP_003438111.1| ribonuclease III [Klebsiella variicola At-22]
 gi|189043322|sp|A6TCI1|RNC_KLEP7 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226741374|sp|B5XNH0|RNC_KLEP3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|150956272|gb|ABR78302.1| ribonuclease III [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|206569329|gb|ACI11105.1| ribonuclease III [Klebsiella pneumoniae 342]
 gi|288888781|gb|ADC57099.1| ribonuclease III [Klebsiella variicola At-22]
          Length = 226

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 72/213 (33%), Positives = 114/213 (53%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFHHQELLQQALTHRSASSKH---NERLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSDIQNVERLILSWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 210


>gi|254561469|ref|YP_003068564.1| ribonuclease III [Methylobacterium extorquens DM4]
 gi|254268747|emb|CAX24708.1| ribonuclease III [Methylobacterium extorquens DM4]
          Length = 256

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 91/223 (40%), Positives = 124/223 (55%), Gaps = 2/223 (0%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNH 62
             + LE RIG+ FA+ +LL  ALTH S +       SY+RLEFLGDR+LGL ++  L+  
Sbjct: 23  SLAVLEARIGHVFADPTLLPLALTHVSKAGQSGRVGSYQRLEFLGDRVLGLAVAETLYKA 82

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
              A+EGELS R   LV  ETC+ VA   ++   + +     +       +I ADV E++
Sbjct: 83  LPGAEEGELSRRLAGLVRRETCAVVAEAWEVGPHLNLGPGEIQTGGRRNQTILADVCEAI 142

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           + A++LD G E     V + ++     +    RDAK+ LQEWA A+    P Y+V  RSG
Sbjct: 143 LGAVFLDAGYEATRAIVQRAFRPGEETAAPRGRDAKSALQEWAMARSLAIPVYEVVERSG 202

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           PDH P F +   + G+ P  G   SKR AEQ AA  VL REGI
Sbjct: 203 PDHAPVFRIAARVEGIEPGYGEGASKRVAEQEAARAVLAREGI 245


>gi|307132118|ref|YP_003884134.1| RNase III [Dickeya dadantii 3937]
 gi|306529647|gb|ADM99577.1| RNase III [Dickeya dadantii 3937]
          Length = 226

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 72/213 (33%), Positives = 111/213 (52%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L+K++GY F    LL +ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPILINRLQKKLGYTFQQYDLLLQALTHRSASSKH---NERLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     + ++++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSNIQTVERLILQWYQTRLDEISPGDKQKDPKTRLQEFLQGRHLPLPTYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SG   P  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGFSEPVVGTGSSRRK 210


>gi|163744855|ref|ZP_02152215.1| ribonuclease III [Oceanibulbus indolifex HEL-45]
 gi|161381673|gb|EDQ06082.1| ribonuclease III [Oceanibulbus indolifex HEL-45]
          Length = 228

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 92/219 (42%), Positives = 129/219 (58%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
                E RIG++FA   LL +A+TH+S+S + ++  +RLEFLGDR+LGL+++  L     
Sbjct: 6   DLKAFEARIGHSFAKPELLVRAVTHASMSSANRDDNQRLEFLGDRVLGLVMAEALLALDP 65

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            A EG+L+ RFN+LV  ETC+ VARE+DL   +++             ++  D +E++IA
Sbjct: 66  GATEGQLAPRFNALVRKETCADVAREIDLGKVLKLGRSEMISGGRRKQALLGDAIEAVIA 125

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A+YLD G E A   V + W  R     +  RDAKT LQEWA A+  + P Y  T RSGPD
Sbjct: 126 AVYLDSGFEAAKGLVLRLWGDRLKTVKEDARDAKTALQEWAQARGLMPPRYVQTDRSGPD 185

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           H P FT+   +   A A     SKRAAEQ AA  +L++ 
Sbjct: 186 HAPVFTITARLDNGAEAAATAPSKRAAEQAAATTLLRQL 224


>gi|163851697|ref|YP_001639740.1| ribonuclease III [Methylobacterium extorquens PA1]
 gi|163663302|gb|ABY30669.1| Ribonuclease III [Methylobacterium extorquens PA1]
          Length = 256

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 91/223 (40%), Positives = 124/223 (55%), Gaps = 2/223 (0%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNH 62
             + LE RIG+ FA+ +LL  ALTH S +       SY+RLEFLGDR+LGL ++  L+  
Sbjct: 23  SLAVLEARIGHVFADPTLLPLALTHVSKAGQSGRVGSYQRLEFLGDRVLGLAVAETLYKA 82

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
              A+EGELS R   LV  ETC+ VA   ++   + +     +       +I ADV E++
Sbjct: 83  LPGAEEGELSRRLAGLVRRETCAVVAEAWEVGPHLNLGPGEIQTGGRRNQTILADVCEAI 142

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           + A++LD G E     V + ++     +    RDAK+ LQEWA A+    P Y+V  RSG
Sbjct: 143 LGAVFLDAGYEATRAIVQRAFRPGEETAAPRGRDAKSALQEWAMARSLAIPVYEVVERSG 202

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           PDH P F +   + G+ P  G   SKR AEQ AA  VL REGI
Sbjct: 203 PDHAPVFRIAARVEGIEPGYGEGASKRVAEQEAARAVLAREGI 245


>gi|240138862|ref|YP_002963337.1| ribonuclease III [Methylobacterium extorquens AM1]
 gi|240008834|gb|ACS40060.1| ribonuclease III [Methylobacterium extorquens AM1]
          Length = 256

 Score =  254 bits (651), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 91/223 (40%), Positives = 124/223 (55%), Gaps = 2/223 (0%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNH 62
             + LE RIG+ FA+ +LL  ALTH S +       SY+RLEFLGDR+LGL ++  L+  
Sbjct: 23  SLAVLEARIGHVFADPTLLPLALTHVSKAGQSGRVGSYQRLEFLGDRVLGLAVAETLYKA 82

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
              A+EGELS R   LV  ETC+ VA   ++   + +     +       +I ADV E++
Sbjct: 83  LPGAEEGELSRRLAGLVRRETCAVVAEAWEVGPHLNLGPGEIQTGGRRNQTILADVCEAI 142

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           + A++LD G E     V + ++     +    RDAK+ LQEWA A+    P Y+V  RSG
Sbjct: 143 LGAVFLDAGYEATRAIVQRAFRPGEETAAPRGRDAKSALQEWAMARSLAIPVYEVVERSG 202

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           PDH P F +   + G+ P  G   SKR AEQ AA  VL REGI
Sbjct: 203 PDHAPVFRIAARVEGIEPGYGEGASKRVAEQEAARAVLAREGI 245


>gi|15615052|ref|NP_243355.1| ribonuclease III [Bacillus halodurans C-125]
 gi|20139354|sp|Q9KA05|RNC_BACHD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|10175109|dbj|BAB06208.1| ribonuclease III [Bacillus halodurans C-125]
          Length = 263

 Score =  254 bits (651), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 64/220 (29%), Positives = 106/220 (48%), Gaps = 5/220 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +  L + +   FAN+ LL +A THSS  + ++    +  ERLEFLGD +L L +S  L+ 
Sbjct: 35  FDELLRTLNLTFANKKLLVQAFTHSSYVNEHRIQSCKDNERLEFLGDAVLELAVSQYLYK 94

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F+   EG+++    S+V   + +Q+A EL     + +             ++ ADV ES
Sbjct: 95  AFEQMSEGDMTKLRASIVCEPSLAQLAEELHFGELVLLGKGEEMTGGRKRPALLADVFES 154

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            + ALYLD G++    F+++    +  +       D K++LQE+          Y++   
Sbjct: 155 FVGALYLDQGMDAVYLFLERTIYPKISEGAFSHMMDFKSQLQEFIQRDNLGHIHYEIVQE 214

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            GP H+  F   V ++      G   SK+ AEQ AA + L
Sbjct: 215 RGPAHNREFVSEVVLNNETLGVGTGRSKKEAEQHAAQQAL 254


>gi|225419776|ref|ZP_03762079.1| hypothetical protein CLOSTASPAR_06114 [Clostridium asparagiforme
           DSM 15981]
 gi|225041580|gb|EEG51826.1| hypothetical protein CLOSTASPAR_06114 [Clostridium asparagiforme
           DSM 15981]
          Length = 232

 Score =  254 bits (651), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 114/227 (50%), Gaps = 6/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M+      LE+ I Y F    L  +ALTHSS ++ ++       ERLEFLGD +L ++ S
Sbjct: 1   MNR-NLQELERTICYQFKEHGLFVQALTHSSYANEHRWNHSRCNERLEFLGDAVLEIVTS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L++ ++   EG+L+    S+V   T +  A ++ L  ++ +             S+ +
Sbjct: 60  DFLYHKYEDLPEGDLTKIRASIVCEPTLAYCAGDISLGEYLLLGKGEEATGGRSRNSVVS 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D +E+LI A+YLDGG   A  F+ ++     ++  +   D+KT LQE   ++      Y+
Sbjct: 120 DAMEALIGAIYLDGGFANAKEFIHRFIL-NDIEHKQLFYDSKTILQEMVQSRSSEGLSYE 178

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +    GPDH+  F V   I G    +G   +K+AAEQVAA   + + 
Sbjct: 179 ILREEGPDHNKSFEVCARIGGAEIGRGTGRTKKAAEQVAAYNGILKL 225


>gi|218780584|ref|YP_002431902.1| ribonuclease III [Desulfatibacillum alkenivorans AK-01]
 gi|218761968|gb|ACL04434.1| Ribonuclease III [Desulfatibacillum alkenivorans AK-01]
          Length = 535

 Score =  254 bits (651), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 72/222 (32%), Positives = 112/222 (50%), Gaps = 6/222 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           LE+ +GY F    LL +A+ HSS  + + +      ERLEFLGD +L L +S +L + + 
Sbjct: 309 LEEALGYNFKTPELLLEAMCHSSYVNEHPDCTWTHNERLEFLGDAVLNLAVSDMLMSKYS 368

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             +EG+LS    SLV+    +++AR L +   + +     +       SI AD +E++  
Sbjct: 369 ENREGDLSRLRASLVNEGQLAEIARSLGIGQHLLLGKGEARGRGWDKNSILADSLEAVFG 428

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
            +Y D G   A   +         +  +    +D KT LQE+A +K  +TP Y++    G
Sbjct: 429 GIYSDSGYADAFKVIKNLIAPLIPEEVAVAAAQDYKTRLQEYAQSKLRITPSYELIREFG 488

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           PDH+  F     ++    +QG   SK+AAEQ AA EVL   G
Sbjct: 489 PDHEKTFVAQATVNKEFTSQGKGRSKKAAEQDAAREVLILLG 530


>gi|310779301|ref|YP_003967634.1| RNAse III [Ilyobacter polytropus DSM 2926]
 gi|309748624|gb|ADO83286.1| RNAse III [Ilyobacter polytropus DSM 2926]
          Length = 237

 Score =  254 bits (651), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 71/231 (30%), Positives = 123/231 (53%), Gaps = 6/231 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M    +  LEK++ Y F ++ LL+ AL H S  +   +    + ERLE LGD +L L+++
Sbjct: 1   MGESCFVELEKKLKYTFKSKKLLKHALIHRSYGNENWDYKKVNNERLELLGDAVLDLVVT 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+ HF S+ EG+L+   + +VS    ++++R+L + + + +S           +SI  
Sbjct: 61  EYLYLHFTSSSEGDLAKLKSMIVSEPVLAKISRKLGVGNHLLLSKGEELTGGRDRSSILG 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPE 174
           DV E+++ A+YLD    +A  F  K+ K+    +   +   D KT LQE++  ++ V P 
Sbjct: 121 DVFEAILGAVYLDSDFMLAKEFAIKHLKRFIDHIDENEDLIDFKTILQEFSQREYKVIPS 180

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           Y+V    GPDH   F + V+I+      G   +K++AEQ AA    ++ G+
Sbjct: 181 YEVIKEMGPDHRKSFEIAVKINDELMGLGTGRNKKSAEQSAARNACRKLGV 231


>gi|50913818|ref|YP_059790.1| ribonuclease III [Streptococcus pyogenes MGAS10394]
 gi|56808931|ref|ZP_00366639.1| COG0571: dsRNA-specific ribonuclease [Streptococcus pyogenes M49
           591]
 gi|139474237|ref|YP_001128953.1| ribonuclease III [Streptococcus pyogenes str. Manfredo]
 gi|209559002|ref|YP_002285474.1| ribonuclease III [Streptococcus pyogenes NZ131]
 gi|255591218|ref|XP_002535468.1| ribonuclease III, putative [Ricinus communis]
 gi|306827819|ref|ZP_07461089.1| ribonuclease III [Streptococcus pyogenes ATCC 10782]
 gi|73917584|sp|Q5XDA6|RNC_STRP6 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043367|sp|A2RFW8|RNC_STRPG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226741379|sp|B5XKB7|RNC_STRPZ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|50902892|gb|AAT86607.1| Ribonuclease III [Streptococcus pyogenes MGAS10394]
 gi|134272484|emb|CAM30747.1| ribonuclease III [Streptococcus pyogenes str. Manfredo]
 gi|209540203|gb|ACI60779.1| Ribonuclease III [Streptococcus pyogenes NZ131]
 gi|223523016|gb|EEF26915.1| ribonuclease III, putative [Ricinus communis]
 gi|304429989|gb|EFM33028.1| ribonuclease III [Streptococcus pyogenes ATCC 10782]
          Length = 230

 Score =  254 bits (651), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 113/226 (50%), Gaps = 9/226 (3%)

Query: 7   STLEKRI----GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58
             LE+ +       F + +LLE A TH+S ++ ++       ERLEFLGD +L L+IS  
Sbjct: 2   KQLEELLSTSFDIQFNDLTLLETAFTHTSYANEHRLLNVSHNERLEFLGDAVLQLIISEY 61

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF  +    EG++S   + +V  E+ +  +R     ++I++     K       +I  D+
Sbjct: 62  LFAKYPKKTEGDMSKLRSMIVREESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDTILGDL 121

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKV 177
            E+ + AL LD GI+    F+ +    +  K   +  +D KT LQE+   K  V  +Y+V
Sbjct: 122 FEAFLGALLLDKGIDAVRRFLKQVMIPQVEKGNFERVKDYKTCLQEFLQTKGDVVIDYQV 181

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               GP H  +F V + ++G   ++G+  SK+ AEQ AA   L + 
Sbjct: 182 ISEKGPAHAKQFEVSIVVNGAVLSKGLGKSKKLAEQDAAKNALAQL 227


>gi|261253900|ref|ZP_05946473.1| ribonuclease III [Vibrio orientalis CIP 102891]
 gi|260937291|gb|EEX93280.1| ribonuclease III [Vibrio orientalis CIP 102891]
          Length = 225

 Score =  254 bits (651), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 75/206 (36%), Positives = 111/206 (53%), Gaps = 6/206 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            LEK++GY F +  L+  ALTH S +  +    ERLEFLGD IL  +I+  L++ F    
Sbjct: 7   KLEKKLGYQFNDAELISLALTHRSANGKH---NERLEFLGDSILSFVIADDLYHRFPKVN 63

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG++S    +LV   T +++ RE +L   +++     K       SI AD VE++I A+Y
Sbjct: 64  EGDMSRMRATLVRGNTLAELGREFELGDHLKLGPGELKSGGFRRDSILADAVEAIIGAIY 123

Query: 128 LDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           LD  IEV    +  ++K R  A+K G  ++D KT LQE+   +    P Y VT   G  H
Sbjct: 124 LDSDIEVVRGIILSWYKTRLDAIKPGVSQKDPKTRLQEFLQGRRKPLPAYTVTNIKGEAH 183

Query: 186 DPRFTVVVEISGLA-PAQGMDCSKRA 210
           +  FTV  E++G+  P  G   S+R 
Sbjct: 184 NQEFTVSCEVAGIGQPVIGKGTSRRK 209


>gi|71274462|ref|ZP_00650750.1| Ribonuclease III [Xylella fastidiosa Dixon]
 gi|71901683|ref|ZP_00683759.1| Ribonuclease III [Xylella fastidiosa Ann-1]
 gi|170730564|ref|YP_001775997.1| ribonuclease III [Xylella fastidiosa M12]
 gi|238687923|sp|B0U3D8|RNC_XYLFM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|71164194|gb|EAO13908.1| Ribonuclease III [Xylella fastidiosa Dixon]
 gi|71728553|gb|EAO30708.1| Ribonuclease III [Xylella fastidiosa Ann-1]
 gi|167965357|gb|ACA12367.1| Ribonuclease III [Xylella fastidiosa M12]
          Length = 227

 Score =  254 bits (651), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 80/226 (35%), Positives = 116/226 (51%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M + + S  ++RIGY F + SLL +AL H S    +    ERLEFLGD ++ LLI+  LF
Sbjct: 1   MISSKASDYQQRIGYVFTDPSLLLQALRHCSAGTPH---NERLEFLGDSVVNLLIAEALF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             +  A EG L+   + LV   + + +AR + L   + +     K       SI AD VE
Sbjct: 58  QRWPRADEGALTRARSELVRETSLASIARTMQLGEQLILGPGELKSGGHRRDSILADAVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++IAA+YLD  +    T V  +++    AL  GK  +D KT LQEW  A+    P Y++ 
Sbjct: 118 AVIAAIYLDADLATCRTVVLPWFETALTALPVGKPEKDPKTRLQEWLQARQWSLPVYELI 177

Query: 179 FRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223
           F SG  H   F V   +  L    +G   S+R AEQ AA+  + + 
Sbjct: 178 FESGDPHTKHFRVSCTLGELKLRTEGEGSSRRLAEQDAASHAINQL 223


>gi|325275444|ref|ZP_08141375.1| ribonuclease III [Pseudomonas sp. TJI-51]
 gi|324099420|gb|EGB97335.1| ribonuclease III [Pseudomonas sp. TJI-51]
          Length = 229

 Score =  254 bits (651), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 85/232 (36%), Positives = 118/232 (50%), Gaps = 11/232 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           MSA   + LE+++GY F N+  +  ALTH S +     + ERLEFLGD IL  +    LF
Sbjct: 1   MSA-SLARLERKLGYTFKNQDQMLLALTHRSYA---GRNNERLEFLGDAILNFVAGEALF 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A+EG+LS     LV  ET +++AR  DL  ++R+ S   K       SI AD +E
Sbjct: 57  ERFPQAREGQLSRLRARLVKGETLARLARGFDLGEYLRLGSGELKSGGFRRESILADALE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI A+YLD  +E A   V  +       L      +D KT LQE+  ++    P Y+V 
Sbjct: 117 ALIGAIYLDADMETARERVLAWLANEFEGLTLVDTNKDPKTRLQEFLQSRSCELPRYEVV 176

Query: 179 FRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
              G  H   F V  E+   +  +  QG+  S+R AEQVAAA  L   G+  
Sbjct: 177 DIQGEPHCRTFFVECEVVLLNNKSRGQGV--SRRIAEQVAAASALIALGVEN 226


>gi|225570731|ref|ZP_03779754.1| hypothetical protein CLOHYLEM_06832 [Clostridium hylemonae DSM
           15053]
 gi|225160474|gb|EEG73093.1| hypothetical protein CLOHYLEM_06832 [Clostridium hylemonae DSM
           15053]
          Length = 231

 Score =  254 bits (651), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 81/223 (36%), Positives = 112/223 (50%), Gaps = 5/223 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
               LEKRIGY F    LL+KA+ HSS ++       E  ERLEFLGD +L L+ S  LF
Sbjct: 4   DLKQLEKRIGYTFKEFGLLKKAMMHSSYANEQHLHKYECNERLEFLGDAVLELVSSEFLF 63

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                  EGEL+    S+V     +  AREL +  F+ +             SI +D +E
Sbjct: 64  YEHAKMPEGELTKTRASMVCEPALAFCARELQIGDFLLLGKGEDATGGRKRESITSDAME 123

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +LI A+Y+DGG   A  F++++  +  L++ K   D+KT LQE   A F     Y +   
Sbjct: 124 ALIGAIYIDGGFANAKEFIERFILK-DLENRKLFFDSKTILQEIVQANFKDAITYHLIGE 182

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            GPDHD  F V V I       G   +K+AAEQ AA + + + 
Sbjct: 183 EGPDHDKSFLVAVHIGEDEYGIGRGRTKKAAEQEAAYQSILKL 225


>gi|224534577|ref|ZP_03675153.1| ribonuclease III [Borrelia spielmanii A14S]
 gi|224514254|gb|EEF84572.1| ribonuclease III [Borrelia spielmanii A14S]
          Length = 245

 Score =  254 bits (651), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 116/226 (51%), Gaps = 5/226 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLL 59
             + S   + +   F N  LL  AL+HSS S+       + ERLEFLGD +L L+I+  L
Sbjct: 15  KAQLSEFLENLSIDFNNFDLLNTALSHSSYSNELDQKSGNNERLEFLGDSVLNLIITDHL 74

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  + +  EGELS   + +VS ++ S +ARE+DL S+I +      +       I AD +
Sbjct: 75  YKTYPNKSEGELSKARSYIVSEDSLSSIAREIDLGSYILLGRGEESNDGRNKKGILADAI 134

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E+ + A+YLD G  +A  FV   +    R + +    +D K+ LQE+   K+ ++P YK+
Sbjct: 135 EAFVGAIYLDSGFSIATEFVVGLFDMYIRLMFNRGDFKDYKSLLQEYVQKKYKISPSYKL 194

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               GPDHD  F V + +     + G   SK+ AE  AA   LK  
Sbjct: 195 DKEIGPDHDKVFCVELYVGEKFISNGKGKSKKEAEMRAAEVALKAM 240


>gi|253578969|ref|ZP_04856240.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849912|gb|EES77871.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 227

 Score =  254 bits (651), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 75/213 (35%), Positives = 107/213 (50%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M+  +   LE+ IGY F N+  L +ALTHSS ++  +     S ERLEFLGD +L L+ S
Sbjct: 1   MNR-KTEELEEIIGYHFKNKHYLTQALTHSSYANEKKLGKLGSNERLEFLGDAVLELISS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  F    EGEL+ +  SLV   + +  ARE  L  F+ +             SI +
Sbjct: 60  DYLYARFTQIPEGELTKKRASLVCEPSLAYCAREFGLPQFLLLGKGEDMTGGRNRDSIVS 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D  E+L+ A+YLDGG   A  FV  +     ++  +   D+KT LQE          EY 
Sbjct: 120 DATEALLGAIYLDGGFANAKEFVLNFIL-NDIEHKQLFYDSKTILQEIVQENGTQPVEYI 178

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           +T   GPDH+  FTV   ++G    QG   +K+
Sbjct: 179 LTKEEGPDHNKNFTVEARVNGKVMGQGSGHTKK 211


>gi|190571469|ref|YP_001975827.1| ribonuclease III [Wolbachia endosymbiont of Culex quinquefasciatus
           Pel]
 gi|238056573|sp|B3CMS0|RNC_WOLPP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|190357741|emb|CAQ55192.1| ribonuclease III [Wolbachia endosymbiont of Culex quinquefasciatus
           Pel]
          Length = 230

 Score =  254 bits (651), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 79/219 (36%), Positives = 124/219 (56%), Gaps = 4/219 (1%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHF 63
           T+ K I Y F + ++LE+ALTH S++    E     YERLEFLGD +L +++S +LF  F
Sbjct: 7   TISKVINYKFTDYAILEEALTHPSVNKRNSEDQVVSYERLEFLGDSVLNMVVSVMLFKMF 66

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
              KEG L+ R   LV   T + VA+E++L +FI +++  R +          + +E+LI
Sbjct: 67  PEEKEGALAKRKTDLVCGSTIANVAKEIELGNFIIMNNSERCNGGKCNLKNLENSLEALI 126

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            A+Y+DGG+E    F+ ++W++ A       +D KT LQEW        P+Y++  ++GP
Sbjct: 127 GAIYIDGGLESVEKFIIRHWEKLAKDILDPPQDPKTSLQEWTQRNKLPLPKYELVKQTGP 186

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            H+P FT+ V I           SK+ AEQ AA  +L++
Sbjct: 187 AHNPEFTISVCIESYDKVSACAPSKKIAEQKAAELILEK 225


>gi|54294754|ref|YP_127169.1| hypothetical protein lpl1831 [Legionella pneumophila str. Lens]
 gi|81368418|sp|Q5WVI4|RNC_LEGPL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|53754586|emb|CAH16070.1| hypothetical protein lpl1831 [Legionella pneumophila str. Lens]
          Length = 224

 Score =  254 bits (651), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 79/224 (35%), Positives = 119/224 (53%), Gaps = 6/224 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            +    L +R+ Y F N + L++ALTH S      ++YER EFLGD IL  +I+  LFN 
Sbjct: 2   KINLERLCRRLNYHFNNMAYLKQALTHCSAG---SDNYERFEFLGDSILSFVIANELFNR 58

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG+LS   + LV  E  +++ARE+ L  ++ +     +      TSI AD +E++
Sbjct: 59  FPLHSEGQLSRLRSFLVKGEMLAEIAREIGLGDYLFLGQGELRSGGFRRTSILADALEAI 118

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFR 180
           +AA+YLDGG+  A   +   +  R          +DAKT+LQE+  A     PEY +T  
Sbjct: 119 LAAIYLDGGMTAAKQIILMLYSSRLDDPDLNHCLKDAKTQLQEFLQASKFALPEYVLTKV 178

Query: 181 SGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
            G +H   F V   I G+   A G   ++R AEQ+AA  +L++ 
Sbjct: 179 EGDEHAQIFHVTCTIEGVSQVAYGTGPNRRKAEQLAAKAMLEQL 222


>gi|226951500|ref|ZP_03821964.1| ds RNA ribonuclease III [Acinetobacter sp. ATCC 27244]
 gi|294651022|ref|ZP_06728362.1| ribonuclease III [Acinetobacter haemolyticus ATCC 19194]
 gi|226837793|gb|EEH70176.1| ds RNA ribonuclease III [Acinetobacter sp. ATCC 27244]
 gi|292823123|gb|EFF81986.1| ribonuclease III [Acinetobacter haemolyticus ATCC 19194]
          Length = 231

 Score =  254 bits (651), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 79/223 (35%), Positives = 123/223 (55%), Gaps = 5/223 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           + L  + L+ RIGY F    LL+ ALTH S+SH +  +YERLEFLGD +LG++I+  L++
Sbjct: 7   NKLNDTRLQARIGYQFQQIDLLKLALTHRSVSHKH--NYERLEFLGDSLLGMIIANYLYH 64

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EG L+    +LV  E   ++A +L L+  + +S+   K       SI AD VE+
Sbjct: 65  TYPTENEGRLTRMRATLVRQEALGKIANDLQLSRSLILSTGELKSGGHHRESILADTVEA 124

Query: 122 LIAALYLDGG-IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +I A+Y+D   + +    V K+++     ++     +D K+ LQE+  A+    P Y+V 
Sbjct: 125 IIGAIYIDSNDLNLLQGIVLKWYEPYFDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVV 184

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              G   +  F V   + GL   QG   S+R AEQ AAAE+LK
Sbjct: 185 DIQGDAPNQHFKVECLVDGLPKIQGEGSSRRFAEQTAAAEILK 227


>gi|51892591|ref|YP_075282.1| ribonuclease III [Symbiobacterium thermophilum IAM 14863]
 gi|81388984|sp|Q67PF5|RNC_SYMTH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|51856280|dbj|BAD40438.1| ribonuclease III [Symbiobacterium thermophilum IAM 14863]
          Length = 235

 Score =  254 bits (651), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 73/214 (34%), Positives = 112/214 (52%), Gaps = 5/214 (2%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLFNHFDSAKE 68
           + +GY F + SLL +ALTH++ ++ +  +   ERLEFLGD +LG++I+  L+  +    E
Sbjct: 16  EALGYEFRDESLLLEALTHTTYANEHPRARANERLEFLGDSVLGMVIAAHLYERYPDLPE 75

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GEL+    ++V   + ++ AR L +   +R              S  +D  E+++ ALYL
Sbjct: 76  GELTKIRAAVVCEPSLAERARVLGIGRHMRFGRGEAVS-GRDRDSTLSDAFEAVVGALYL 134

Query: 129 DGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           DGG+E A  FV +   Q   A + G  R D KT+LQE    +    P+Y++    GP H 
Sbjct: 135 DGGLEAAQRFVLRELGQLVEAARQGLVRVDYKTQLQEQLQRQGAAAPQYRLLVEEGPAHL 194

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            RF V V   G     G   +K+ AEQ AA + L
Sbjct: 195 RRFQVGVYFEGRLLGTGWGRNKKEAEQEAARQAL 228


>gi|32129971|sp|Q9PB98|RNC_XYLFA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
          Length = 227

 Score =  254 bits (650), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 80/226 (35%), Positives = 116/226 (51%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M + + S  ++RIGY F + SLL +AL H S    +    ERLEFLGD ++ LLI+  LF
Sbjct: 1   MISSKASDYQQRIGYVFTDPSLLLQALRHCSAGTPH---NERLEFLGDSVVNLLIAEALF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             +  A EG L+   + LV   + + +AR + L   + +     K       SI AD VE
Sbjct: 58  QRWPRADEGALTRARSELVRETSLASIARTMQLGEQLILGPGELKSGGHRRDSILADAVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++IAA+YLD  +    T V  +++    AL  GK  +D KT LQEW  A+    P Y++ 
Sbjct: 118 AVIAAIYLDADLATCRTVVLPWFETALTALPVGKPEKDPKTRLQEWLQARQWSLPVYELI 177

Query: 179 FRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223
           F SG  H   F V   +  L    +G   S+R AEQ AA+  + + 
Sbjct: 178 FESGDPHTKHFRVSCTLGELKLRTEGEGSSRRLAEQDAASHAIDQL 223


>gi|197105333|ref|YP_002130710.1| ribonuclease III [Phenylobacterium zucineum HLK1]
 gi|238690159|sp|B4RCU4|RNC_PHEZH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|196478753|gb|ACG78281.1| ribonuclease III [Phenylobacterium zucineum HLK1]
          Length = 238

 Score =  254 bits (650), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 89/223 (39%), Positives = 129/223 (57%), Gaps = 4/223 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
            + LE+RIGY F +R LLE+ALTH+S+    +     ERLEFLGDR+L L  +  L    
Sbjct: 8   VAELERRIGYVFTDRDLLERALTHASVGDGARAVRHNERLEFLGDRVLNLCAAERLMALD 67

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A+EGE+S    SLV+   C++ A+   L   +R+S+   K       ++  D  E+LI
Sbjct: 68  PDAREGEMSRLLASLVNYHACARAAKRAGLQEALRLSASATKVGARKSDAVLGDACEALI 127

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           AALY+DGG+E A  F  K+W +   +  + R +D KT+LQEW        P Y++  + G
Sbjct: 128 AALYIDGGLETARAFFLKFWDEEFARLDEPRAKDPKTQLQEWVQGMGLPLPTYEIVSQEG 187

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV-LKREG 224
           P H P FTV V+++G    +G   S++AAE+ AA  + LKREG
Sbjct: 188 PPHAPSFTVEVQVAGFGAERGEGRSRQAAEKAAAQCMLLKREG 230


>gi|258645853|ref|ZP_05733322.1| ribonuclease III [Dialister invisus DSM 15470]
 gi|260403226|gb|EEW96773.1| ribonuclease III [Dialister invisus DSM 15470]
          Length = 249

 Score =  254 bits (650), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 68/212 (32%), Positives = 104/212 (49%), Gaps = 6/212 (2%)

Query: 18  ANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
            N  LL  ALTH+S ++ ++       ERLEFLGD +L L +   LF  F    EG+L+ 
Sbjct: 27  HNMELLNVALTHTSYANEHRNLKVHDNERLEFLGDAVLDLAVGDYLFRRFPEWPEGDLTR 86

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
              S+V    C++ A    +  ++ +             SI  +  ES+I A+YLD G E
Sbjct: 87  AKASVVCKPACAECAANFHVGDYMLLGRGEEMSGGRTRVSILGNAFESVIGAVYLDNGYE 146

Query: 134 VAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
           VA  F+  + ++    +  G +  D K++LQE A     V   Y+V    GPDHD    +
Sbjct: 147 VAAKFILGHMQKFLDLVDQGIYDHDYKSDLQEIAQKNGDVDIRYEVVRDEGPDHDKTIWM 206

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            + I+G A   G+  +K+ A Q AA E ++R 
Sbjct: 207 ELFINGKALGTGIGKNKKEAAQNAAKEAIERL 238


>gi|251788698|ref|YP_003003419.1| ribonuclease III [Dickeya zeae Ech1591]
 gi|247537319|gb|ACT05940.1| ribonuclease III [Dickeya zeae Ech1591]
          Length = 226

 Score =  254 bits (650), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 72/213 (33%), Positives = 110/213 (51%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L+K++GY F    LL +ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPILINRLQKKLGYTFQQYDLLLQALTHRSASSKH---NERLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSNIQTVERLILSWYQTRLDEISPGDKQKDPKTRLQEFLQGRHLPLPTYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SG   P  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGFSEPVVGTGSSRRK 210


>gi|51598958|ref|YP_073146.1| ribonuclease III [Borrelia garinii PBi]
 gi|219684131|ref|ZP_03539075.1| ribonuclease III [Borrelia garinii PBr]
 gi|81609804|sp|Q660G7|RNC_BORGA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|51573529|gb|AAU07554.1| ribonuclease III [Borrelia garinii PBi]
 gi|219672120|gb|EED29173.1| ribonuclease III [Borrelia garinii PBr]
          Length = 245

 Score =  254 bits (650), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 117/226 (51%), Gaps = 5/226 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLL 59
             + S   + +   F N  LL  AL+HSS S+      ++ ERLEFLGD +L L+I+  L
Sbjct: 15  KAQLSEFLENLSIDFNNFDLLNTALSHSSYSNELDQKADNNERLEFLGDSVLNLIITDHL 74

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  + +  EGELS   + +VS ++ S +ARE+DL S+I +      +       I AD +
Sbjct: 75  YKTYPNKSEGELSKARSYIVSEDSLSSIAREIDLGSYILLGRGEESNDGRNKKGILADAI 134

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E+ + A+YLD G  +A  FV   +    R + +    +D K+ LQE+   K+ ++P YK+
Sbjct: 135 EAFVGAIYLDSGFSMATEFVVGLFDMYIRLMFNRGDFKDYKSLLQEYVQKKYKISPSYKL 194

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               GPDHD  F V + +     + G   SK+ AE  AA   LK  
Sbjct: 195 DKEIGPDHDKVFCVELYVGEKFISNGKGKSKKEAEMRAAEVALKAM 240


>gi|260425711|ref|ZP_05779691.1| ribonuclease III [Citreicella sp. SE45]
 gi|260423651|gb|EEX16901.1| ribonuclease III [Citreicella sp. SE45]
          Length = 227

 Score =  254 bits (650), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 90/220 (40%), Positives = 131/220 (59%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           +   + LE+R+G+ FA+   L +ALTHSS+S   +E  +RLEFLGDR+LGL+++  L + 
Sbjct: 4   SAEIAALEQRLGHRFADPERLRRALTHSSMSAPGREDNQRLEFLGDRVLGLVMAEALLSE 63

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
              A EG+L+ RFN+LV  E C++VARE+DL + +++             ++  D +E++
Sbjct: 64  DRGASEGQLAPRFNALVRKEACAEVAREIDLGAALKLGRSEMMSGGRRKMALLGDAMEAV 123

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           IAA+YLD G   A   V + W  R  +  +  RDAKT LQEWA A+  V P Y    R G
Sbjct: 124 IAAVYLDAGFGTAKALVLRLWGDRIARVEEDARDAKTSLQEWAQARGMVPPSYTEVAREG 183

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           PDH P FT+   +   A A+    SKR AEQ AA+ +L +
Sbjct: 184 PDHAPVFTIEARLENGAAARATAGSKRKAEQQAASGLLDK 223


>gi|71903092|ref|YP_279895.1| ribonuclease III [Streptococcus pyogenes MGAS6180]
 gi|90101651|sp|Q48UR6|RNC_STRPM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|71802187|gb|AAX71540.1| ribonuclease III [Streptococcus pyogenes MGAS6180]
          Length = 230

 Score =  254 bits (650), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 113/226 (50%), Gaps = 9/226 (3%)

Query: 7   STLEKRI----GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58
             LE+ +       F + +LLE A TH+S ++ ++       ERLEFLGD +L L+IS  
Sbjct: 2   KQLEELLSTSFDIQFNDLTLLETAFTHTSYANEHRLLNVSHNERLEFLGDAVLQLIISEY 61

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF  +    EG++S   + +V  E+ +  +R     ++I++     K       +I  D+
Sbjct: 62  LFAKYPKKTEGDMSKLRSMIVREESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDTILGDL 121

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKV 177
            E+ + AL LD GI+    F+ +    +  K   +  RD KT LQE+   K  V  +Y+V
Sbjct: 122 FEAFLGALLLDKGIDAVRRFLKQVMIPQVEKGNFERVRDYKTCLQEFLQTKGDVAIDYQV 181

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               GP H  +F V + ++G   ++G+  SK+ AEQ AA   L + 
Sbjct: 182 ISEKGPAHAKQFEVSIVVNGAVLSKGLGKSKKLAEQDAAKNALAQL 227


>gi|332523874|ref|ZP_08400126.1| ribonuclease III [Streptococcus porcinus str. Jelinkova 176]
 gi|332315138|gb|EGJ28123.1| ribonuclease III [Streptococcus porcinus str. Jelinkova 176]
          Length = 230

 Score =  254 bits (650), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 118/228 (51%), Gaps = 6/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L+ + L++     F ++ LLE A TH+S ++ ++       ERLEFLGD +L L+IS
Sbjct: 1   MKKLK-ALLKETFNIVFNDQDLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  +    EG+LS   + +V  E+ +  +R     ++I++     K       +I  
Sbjct: 60  EYLFKKYPHKPEGDLSKLRSMIVREESLAGFSRFCSFDTYIKLGKGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + AL LD GIE    F+++    +  K   +  +D KT LQE   AK  V  +Y
Sbjct: 120 DLFEAFLGALLLDKGIEEVRLFLNQVMISQVEKGNFEKVKDYKTGLQEVLQAKGDVQIDY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +V   SGP H  +F V + ++    ++G+  SK+ AEQ AA + L+  
Sbjct: 180 QVVKESGPAHAKQFEVAILVNQEVISRGIGKSKKIAEQNAAKKALEHL 227


>gi|15674631|ref|NP_268805.1| ribonuclease III [Streptococcus pyogenes M1 GAS]
 gi|19745653|ref|NP_606789.1| ribonuclease III [Streptococcus pyogenes MGAS8232]
 gi|21909911|ref|NP_664179.1| ribonuclease III [Streptococcus pyogenes MGAS315]
 gi|28896390|ref|NP_802740.1| ribonuclease III [Streptococcus pyogenes SSI-1]
 gi|71910251|ref|YP_281801.1| ribonuclease III [Streptococcus pyogenes MGAS5005]
 gi|94988068|ref|YP_596169.1| ribonuclease III [Streptococcus pyogenes MGAS9429]
 gi|94991954|ref|YP_600053.1| ribonuclease III [Streptococcus pyogenes MGAS2096]
 gi|94993854|ref|YP_601952.1| ribonuclease III [Streptococcus pyogenes MGAS10750]
 gi|54039244|sp|P66671|RNC_STRP3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|54039245|sp|P66672|RNC_STRP8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|54041616|sp|P66670|RNC_STRP1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043363|sp|Q1JCZ9|RNC_STRPB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043364|sp|Q1JMX4|RNC_STRPC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043366|sp|Q1J7V3|RNC_STRPF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|13621744|gb|AAK33526.1| putative ribonuclease III [Streptococcus pyogenes M1 GAS]
 gi|19747784|gb|AAL97288.1| putative ribonuclease III [Streptococcus pyogenes MGAS8232]
 gi|21904099|gb|AAM78982.1| putative ribonuclease III [Streptococcus pyogenes MGAS315]
 gi|28811641|dbj|BAC64573.1| putative ribonuclease III [Streptococcus pyogenes SSI-1]
 gi|71853033|gb|AAZ51056.1| ribonuclease III [Streptococcus pyogenes MGAS5005]
 gi|94541576|gb|ABF31625.1| ribonuclease III [Streptococcus pyogenes MGAS9429]
 gi|94545462|gb|ABF35509.1| Ribonuclease III [Streptococcus pyogenes MGAS2096]
 gi|94547362|gb|ABF37408.1| Ribonuclease III [Streptococcus pyogenes MGAS10750]
          Length = 230

 Score =  254 bits (650), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 113/226 (50%), Gaps = 9/226 (3%)

Query: 7   STLEKRI----GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58
             LE+ +       F + +LLE A TH+S ++ ++       ERLEFLGD +L L+IS  
Sbjct: 2   KQLEELLSTSFDIQFNDLTLLETAFTHTSYANEHRLLNVSHNERLEFLGDAVLQLIISEY 61

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF  +    EG++S   + +V  E+ +  +R     ++I++     K       +I  D+
Sbjct: 62  LFAKYPKKTEGDMSKLRSMIVREESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDTILGDL 121

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKV 177
            E+ + AL LD GI+    F+ +    +  K   +  +D KT LQE+   K  V  +Y+V
Sbjct: 122 FEAFLGALLLDKGIDAVRRFLKQVMIPQVEKGNFERVKDYKTCLQEFLQTKGDVAIDYQV 181

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               GP H  +F V + ++G   ++G+  SK+ AEQ AA   L + 
Sbjct: 182 ISEKGPAHAKQFEVSIVVNGAVLSKGLGKSKKLAEQDAAKNALAQL 227


>gi|205373341|ref|ZP_03226145.1| ribonuclease III [Bacillus coahuilensis m4-4]
          Length = 249

 Score =  254 bits (649), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 112/223 (50%), Gaps = 5/223 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +   +++IG +F+N S+L++A THSS  + ++    E  ERLEFLGD +L L +S  L+N
Sbjct: 19  FKDFQEKIGISFSNVSILKQAFTHSSYVNEHRKKPFEDNERLEFLGDAVLELTVSHFLYN 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A ELD  S + +             ++ ADV E+
Sbjct: 79  KYATMSEGELTKLRAAIVCEPSLVKFANELDFGSVVLLGKGEELTGGRTRPALLADVFEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            I ALYLD G++    F+++    +          D K++LQE    +     EY++   
Sbjct: 139 FIGALYLDQGLQSVEKFLEQIVFPKINDGAFSHVMDYKSQLQELIQREGSGQLEYRILLE 198

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            GP H   F   V ++ +    G   SK+ AEQ AA + L+  
Sbjct: 199 KGPAHSKEFVSQVLLNSMEIGVGNGRSKKEAEQHAAQKALEHL 241


>gi|331084978|ref|ZP_08334065.1| ribonuclease III [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330408678|gb|EGG88143.1| ribonuclease III [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 229

 Score =  254 bits (649), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 85/226 (37%), Positives = 118/226 (52%), Gaps = 8/226 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLF 60
           R   LEK+IGY F  + LL+KA+ HSS ++      Q+  ERLEFLGD +L L  S  LF
Sbjct: 3   RLKELEKKIGYTFQKKELLQKAMMHSSYTNEKHMKKQDCNERLEFLGDAVLELTTSEALF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
               S  EGEL+    S+V     + VA+EL L S++ +             SI +D VE
Sbjct: 63  FDNPSMPEGELTKTRASIVCEPALAFVAKELMLGSYLLLGKGEEATGGRQRDSITSDAVE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +LI A+YLDGG   A  F+ K+     L++ K   D+KT LQE   AKF     Y +   
Sbjct: 123 ALIGAIYLDGGFASAKEFIQKFILS-DLENKKLFYDSKTILQEMVQAKFTENVRYVLEKE 181

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE---VLKRE 223
            GPDH+  FT    I       G   +K+A+EQ AA +   +L+++
Sbjct: 182 EGPDHNKSFTTSAYIGEECYGTGSGRTKKASEQEAAYQTILMLRKK 227


>gi|197285743|ref|YP_002151615.1| ribonuclease III [Proteus mirabilis HI4320]
 gi|238693201|sp|B4F047|RNC_PROMH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|194683230|emb|CAR43912.1| RNase III, ds RNA [Proteus mirabilis HI4320]
          Length = 226

 Score =  254 bits (649), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 77/213 (36%), Positives = 115/213 (53%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ L  + L+K++GY F    LL +ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNTLLVNQLQKKLGYTFKQNELLLQALTHRSASSKH---NERLEFLGDSILSYVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI A++LD  I+     + K+++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGAIFLDSDIQNIENIILKWYENRLAEISPGDKQKDPKTRLQEYLQGRHLPLPSYVVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  +ISG+  P +GM  S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQISGIDQPVKGMGTSRRK 210


>gi|298528053|ref|ZP_07015457.1| ribonuclease III [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511705|gb|EFI35607.1| ribonuclease III [Desulfonatronospira thiodismutans ASO3-1]
          Length = 232

 Score =  254 bits (649), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 73/220 (33%), Positives = 115/220 (52%), Gaps = 4/220 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFD 64
              L+ +IGY + +  LL +ALTHSS ++  + E  ERLEFLGD +L L IS +LF  F 
Sbjct: 2   LDELQDKIGYRYQDPELLVRALTHSSYANERHMEHNERLEFLGDAVLELCISNVLFFRFP 61

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            A EG L+    +LVS  T +++AR L L  +I +             S+ AD +E+++ 
Sbjct: 62  RAPEGHLTRLRAALVSEPTLARLARSLTLGDYIFLGRGEELQGGRDRDSVLADTLEAILG 121

Query: 125 ALYLDGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           A+YLD G + A   +   ++      +++    +D K+ LQE     F   P Y +    
Sbjct: 122 AVYLDSGYDGAFECIAALFEDFIPDRVEALPVSKDFKSRLQEKTQGLFRARPVYTLIDSY 181

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           GP+H+  + V VE+      + M  S + AEQ AA++ L+
Sbjct: 182 GPEHEKIYRVQVELPDGTGIEAMAGSVKKAEQKAASKALE 221


>gi|323499981|ref|ZP_08104937.1| ribonuclease III [Vibrio sinaloensis DSM 21326]
 gi|323314947|gb|EGA68002.1| ribonuclease III [Vibrio sinaloensis DSM 21326]
          Length = 225

 Score =  254 bits (649), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 75/213 (35%), Positives = 114/213 (53%), Gaps = 7/213 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M++   + LEK++GY F +  L+  ALTH S +  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNS-PIAKLEKKLGYQFNDAELIGLALTHRSANGKH---NERLEFLGDSILSFVIADDLY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ RE +L   +++     K       SI AD VE
Sbjct: 57  HRFPKVNEGDMSRMRATLVRGNTLAELGREFELGDHLKLGPGELKSGGFRRDSILADAVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD  IE     +  ++K R  A+K G  ++D KT LQE+   +    P Y VT
Sbjct: 117 AIIGAIYLDSDIEEVRRIILSWYKTRLDAIKPGVSQKDPKTRLQEFLQGRRKPLPAYTVT 176

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRA 210
              G  H+  FTV  E++G+  P  G   S+R 
Sbjct: 177 NIKGEAHNQEFTVSCEVAGIGQPVIGKGTSRRK 209


>gi|3176883|gb|AAD02939.1| RNase III [Bradyrhizobium japonicum]
          Length = 231

 Score =  254 bits (649), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 97/225 (43%), Positives = 140/225 (62%), Gaps = 3/225 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLF 60
           +R   L +  G+ FA+ +LL + +TH S         +SY+RLEFLGD +LGL++S +L+
Sbjct: 1   MRTRRLRRASGHTFADPNLLMQGITHVSALKSGRKRGDSYQRLEFLGDHVLGLVVSDMLY 60

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F +A EGELS R   LV  E+C+ VA+ L L   I++ S           S+  D+ E
Sbjct: 61  HAFPNADEGELSKRLAELVRKESCADVAKSLGLLDDIKLGSVGPSADARLRKSVLGDICE 120

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           ++I A++LDGG   A  FV + W +R  K  +  RD KT LQEWA  K   TP Y+   R
Sbjct: 121 AVIGAIFLDGGHAAAAEFVKRNWTERMHKPRRPLRDPKTVLQEWAQGKGLPTPVYREVER 180

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           +GP HDP+F V V++ GLAPA+G+  SKRAAE+VAA+ +++REG+
Sbjct: 181 TGPHHDPQFRVAVDLPGLAPAEGIGGSKRAAEKVAASVMIEREGV 225


>gi|288553095|ref|YP_003425030.1| ribonuclease III [Bacillus pseudofirmus OF4]
 gi|288544255|gb|ADC48138.1| ribonuclease III [Bacillus pseudofirmus OF4]
          Length = 263

 Score =  254 bits (649), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 107/224 (47%), Gaps = 5/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++  L  +I   F NR LL +A THSS  + ++    +  ERLEFLGD +L L +S  L+
Sbjct: 34  QFDDLLLKIDLTFENRKLLIQAFTHSSYVNEHRIYSFQDNERLEFLGDAVLELAVSQFLY 93

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F+S  EGE++    S+V   + ++ A EL+    + +             ++ ADV E
Sbjct: 94  KKFNSMSEGEMTKLRASIVCEPSLARFAEELEFGELVLLGKGEEMTGGRNRPALLADVFE 153

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           S I ALYLD G+E    F+ +    +          D K++LQE+         +Y +  
Sbjct: 154 SFIGALYLDQGLEAVYKFLSQTMYPKINDGAFSHMMDFKSQLQEFIQRDNLGQIQYVIVQ 213

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             GP H+  F   V+++      G   SK+ AEQ AA + L + 
Sbjct: 214 EIGPAHNREFVSEVQLNESKLGVGSGRSKKEAEQHAAQQALIKL 257


>gi|85860141|ref|YP_462343.1| ribonuclease III [Syntrophus aciditrophicus SB]
 gi|85723232|gb|ABC78175.1| ribonuclease III [Syntrophus aciditrophicus SB]
          Length = 240

 Score =  254 bits (649), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 76/232 (32%), Positives = 114/232 (49%), Gaps = 9/232 (3%)

Query: 1   MSALR---YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGL 53
           M+  R      LE  +  AF + +LL+ AL H S  +          ERLEFLGD +L L
Sbjct: 1   MTEERQTALKKLESHLSCAFRDITLLDNALVHRSYVNENPSLSFADNERLEFLGDAVLEL 60

Query: 54  LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
            IS LL   F    EG+LS    S+V+ +  +++A++  + SFI +             S
Sbjct: 61  CISDLLMKAFPDYSEGQLSKLRASVVNEQPLAELAKKCRIGSFILLGKGEESSGGRSKPS 120

Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGV 171
           I A+ +E++ AA++LDGG + A  FV + +     +  +    +D KT LQE +  +F  
Sbjct: 121 ILANTMEAITAAVFLDGGFDRAYEFVRRLFTPLIEEGNRSATYKDYKTTLQELSQNRFRE 180

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            P Y++    GPDHD  F   + I G+    G   SK+ AEQ AA + L   
Sbjct: 181 IPRYRLIGEYGPDHDKLFESGLSIPGIIETTGKGKSKKEAEQHAAHKALDEL 232


>gi|144899862|emb|CAM76726.1| ribonuclease III [Magnetospirillum gryphiswaldense MSR-1]
          Length = 229

 Score =  254 bits (649), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 85/217 (39%), Positives = 116/217 (53%), Gaps = 4/217 (1%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLIS 56
           M A     L +R+G+ FA   LL +ALTH S++          YERLEFLGDR+LGL+++
Sbjct: 1   MDAGPIHDLCQRLGHEFAQSQLLTQALTHPSVAQGRAPRRNTPYERLEFLGDRVLGLVVA 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
            +LF+ F +  EG L+ R  +LV  E+ + VA ++ L   + +S            ++ A
Sbjct: 61  DMLFHRFPTEAEGALARRHAALVRRESLAVVAGQIGLPPCLTLSKGEEDAGGRGNPALLA 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D  E++I ALY D G EVA  FV   W      + +  +DAKT LQEWA       P Y 
Sbjct: 121 DACEAVIGALYADAGFEVAARFVRSAWTALMDAAAQPPKDAKTALQEWAQGLGKPLPVYT 180

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
           V  + GP HDP F V V + G+ P  G   SKR AEQ
Sbjct: 181 VVGQDGPPHDPTFVVSVTVEGVDPVHGTGASKRVAEQ 217


>gi|269121067|ref|YP_003309244.1| ribonuclease III [Sebaldella termitidis ATCC 33386]
 gi|268614945|gb|ACZ09313.1| ribonuclease III [Sebaldella termitidis ATCC 33386]
          Length = 231

 Score =  253 bits (648), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 114/225 (50%), Gaps = 6/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M   +   L ++IGY F +  LL++AL H S ++ + E    + ERLEFLGD +L L+ +
Sbjct: 1   MDDSKLRELMEKIGYEFDDIKLLKEALIHRSYANEHGEIENINNERLEFLGDAVLDLIST 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             ++       EG+L+   + ++S    S V++E+ L  ++ +S+           SI  
Sbjct: 61  EYIYTKEKDDNEGDLAKLKSRIISEPIFSAVSKEIALGEYLFLSNGEEITGGRDRKSILG 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPE 174
           D  E+LI A+++D G + A     KY K +          +D KT LQE   +KF + P 
Sbjct: 121 DAFEALIGAIFMDSGFDEAKRIALKYLKDKIDNIDDLEELKDYKTLLQELFQSKFHIIPN 180

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           Y++    GPDH+ +F + V++       G   SK+ AE+ AA E 
Sbjct: 181 YEILSEKGPDHNKKFEIAVKLKEEIVGIGTGTSKKEAEKNAAREA 225


>gi|270308287|ref|YP_003330345.1| ribonuclease III [Dehalococcoides sp. VS]
 gi|270154179|gb|ACZ62017.1| ribonuclease III [Dehalococcoides sp. VS]
          Length = 248

 Score =  253 bits (648), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 118/225 (52%), Gaps = 6/225 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLL 59
           L  + LE+ +G  F N SLLE+AL H+S  +        S ER+EFLGD +LG++ +  L
Sbjct: 13  LDLTELEESLGVKFENPSLLEQALIHTSWVNENPTHLNGSNERMEFLGDAVLGVIFADRL 72

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           ++ F   +EG+L+   + LV  E+  +VA  ++L +++ +          F  +  A   
Sbjct: 73  YHDFPDIQEGDLTRFRSLLVRRESLVRVALGINLGNYLYLGRGEDVSKGRFKPANLAGAF 132

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177
           E+++AA+Y+D GI++    + + ++    +        D K+ LQE   A+  +TP Y++
Sbjct: 133 EAVLAAIYIDKGIDITREVIFRLFRTEMERVQTLSSNIDYKSRLQELIQAQMQMTPRYRI 192

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           T  SGP+H+  F   V       A+G   SK+ AE  AA   L++
Sbjct: 193 TNFSGPEHNRLFVAEVYTEDKVLAEGSGRSKKEAETSAAKAALQQ 237


>gi|319898692|ref|YP_004158785.1| ribonuclease III [Bartonella clarridgeiae 73]
 gi|319402656|emb|CBI76202.1| ribonuclease III [Bartonella clarridgeiae 73]
          Length = 234

 Score =  253 bits (648), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 114/226 (50%), Positives = 148/226 (65%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M       LE+   ++F +   L+KALTHSS+  S Q +YERLEFLGDR+LGLLI+ +L+
Sbjct: 1   MKHQIIDQLERLTEHSFKDADKLKKALTHSSVQSSEQGNYERLEFLGDRVLGLLIAEMLY 60

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELSVR N LV+A+TC+ +A E+ L + IRV  +++      + ++ ADV+E
Sbjct: 61  QIFPQASEGELSVRLNGLVNAQTCADIALEMGLPNMIRVGCEMKNLEGRRLANMYADVIE 120

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +LIA +YL+GG+E    F+ KYW+ RA K    RRDAKTELQEWAH K    P Y+V  R
Sbjct: 121 ALIAVIYLEGGLESVRPFIQKYWQNRAKKMNAGRRDAKTELQEWAHTKDRAHPHYQVLQR 180

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
            GPDHDP F V V I G A   G   SKR AE+ AA  +L+REGIW
Sbjct: 181 CGPDHDPIFVVEVSICGFASEIGRGSSKRQAERDAAERILRREGIW 226


>gi|170754285|ref|YP_001781997.1| ribonuclease III [Clostridium botulinum B1 str. Okra]
 gi|169119497|gb|ACA43333.1| ribonuclease III [Clostridium botulinum B1 str. Okra]
          Length = 234

 Score =  253 bits (648), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 82/223 (36%), Positives = 120/223 (53%), Gaps = 4/223 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
              L+ ++   F N  LL+ ALTHSS ++  +  + YERLEFLGD +L L+IS  L+  +
Sbjct: 8   LKELQYKLKVYFKNEKLLDVALTHSSYANGKRNIKYYERLEFLGDSVLQLIISEHLYQKY 67

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
           +  KEGEL+ +   +V   +  ++A+  DL  ++++S            SI AD VES+I
Sbjct: 68  EDKKEGELTRKRAIIVCENSLYEIAKRWDLGFYLQMSKGEELTGGRERVSILADCVESII 127

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+YLD G++ A  FV K +K+   K+   +   D KT LQE       +T  Y++  + 
Sbjct: 128 AAIYLDKGLDHAREFVMKNFKEIIEKAMKDEIILDYKTTLQEIVQQNNDLTINYELLKQE 187

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H  RF   V I       G+  SK+ AEQ AA E LK  G
Sbjct: 188 GPPHRRRFFTNVTIDNEVRGTGIGYSKKEAEQNAAREALKNLG 230


>gi|187778952|ref|ZP_02995425.1| hypothetical protein CLOSPO_02547 [Clostridium sporogenes ATCC
           15579]
 gi|187772577|gb|EDU36379.1| hypothetical protein CLOSPO_02547 [Clostridium sporogenes ATCC
           15579]
          Length = 237

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 80/223 (35%), Positives = 120/223 (53%), Gaps = 4/223 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
              L+ ++   F +  LL+ ALTHSS ++  +  + YERLEFLGD +L L+IS  L+  +
Sbjct: 11  LKELQYKLKVCFKDEKLLDVALTHSSYANGKKNIKYYERLEFLGDSVLQLIISEHLYQKY 70

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
           +  KEGEL+ +   +V   +  ++A+  DL  ++++S            SI AD VES+I
Sbjct: 71  EDKKEGELTRKRAIIVCENSLYEMAKRWDLGFYLQMSKGEELTGGRERVSILADCVESII 130

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+YLD G++ A  FV K +K+   K+   +   D KT LQE       +T  Y++  + 
Sbjct: 131 AAIYLDKGLDEAREFVMKNFKEIIEKAMRDEIILDYKTTLQEIVQQNNDLTINYELLKQE 190

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H  +F   V I       G+  SK+ AEQ AA E LK  G
Sbjct: 191 GPPHRRKFFTNVTIDNEVRGTGIGYSKKEAEQNAAKEALKNLG 233


>gi|254459764|ref|ZP_05073180.1| ribonuclease III [Rhodobacterales bacterium HTCC2083]
 gi|206676353|gb|EDZ40840.1| ribonuclease III [Rhodobacteraceae bacterium HTCC2083]
          Length = 228

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 88/221 (39%), Positives = 121/221 (54%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           +     L+KRI Y F    LL +A+THSS+S   +   +RLEFLGDR+LGL+++  L   
Sbjct: 4   SADLQALQKRIDYRFEQGELLTEAVTHSSMSSPSRGDNQRLEFLGDRVLGLVMAEALLGA 63

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
              A EG+L+ R+N+LV  ETC+ VAR++ L   +R+     K       ++  D +E+L
Sbjct: 64  DVKASEGQLAPRYNALVRKETCADVARDIGLGDVLRLGRSEMKSGGRRKLALLGDGMEAL 123

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           IAA+Y+DGG   A   + + W  R        RD KT LQEWA ++    P Y  T RSG
Sbjct: 124 IAAVYVDGGFNAAQALILRLWGSRITSVEADARDPKTSLQEWAQSRGLTPPAYVETARSG 183

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           PDH P FT+   +     A     SKR AEQ AA  +L R 
Sbjct: 184 PDHAPHFTIEARLDTGETASAEAGSKRLAEQAAAKALLTRM 224


>gi|153930813|ref|YP_001384630.1| ribonuclease III [Clostridium botulinum A str. ATCC 19397]
 gi|153937224|ref|YP_001388147.1| ribonuclease III [Clostridium botulinum A str. Hall]
 gi|153940610|ref|YP_001391753.1| ribonuclease III [Clostridium botulinum F str. Langeland]
 gi|168180664|ref|ZP_02615328.1| ribonuclease III [Clostridium botulinum NCTC 2916]
 gi|226949808|ref|YP_002804899.1| ribonuclease III [Clostridium botulinum A2 str. Kyoto]
 gi|152926857|gb|ABS32357.1| ribonuclease III [Clostridium botulinum A str. ATCC 19397]
 gi|152933138|gb|ABS38637.1| ribonuclease III [Clostridium botulinum A str. Hall]
 gi|152936506|gb|ABS42004.1| ribonuclease III [Clostridium botulinum F str. Langeland]
 gi|182668630|gb|EDT80609.1| ribonuclease III [Clostridium botulinum NCTC 2916]
 gi|226841844|gb|ACO84510.1| ribonuclease III [Clostridium botulinum A2 str. Kyoto]
 gi|295319777|gb|ADG00155.1| ribonuclease III [Clostridium botulinum F str. 230613]
 gi|322806720|emb|CBZ04289.1| ribonuclease III [Clostridium botulinum H04402 065]
          Length = 234

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 82/223 (36%), Positives = 120/223 (53%), Gaps = 4/223 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
              L+ ++   F N  LL+ ALTHSS ++  +  + YERLEFLGD +L L+IS  L+  +
Sbjct: 8   LKELQYKLKVYFKNEKLLDVALTHSSYANGKKNIKYYERLEFLGDSVLQLIISEHLYQKY 67

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
           +  KEGEL+ +   +V   +  ++A+  DL  ++++S            SI AD VES+I
Sbjct: 68  EDKKEGELTRKRAIIVCENSLYEIAKRWDLGFYLQMSKGEELTGGRERVSILADCVESII 127

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+YLD G++ A  FV K +K+   K+   +   D KT LQE       +T  Y++  + 
Sbjct: 128 AAIYLDKGLDHAREFVMKNFKEIIEKAMKDEIILDYKTTLQEIVQQNNDLTINYELLKQE 187

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H  RF   V I       G+  SK+ AEQ AA E LK  G
Sbjct: 188 GPPHRRRFFTNVTIDNEVRGTGIGYSKKEAEQNAAREALKNLG 230


>gi|52842090|ref|YP_095889.1| ribonuclease III [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|81377263|sp|Q5ZUD5|RNC_LEGPH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|52629201|gb|AAU27942.1| ribonuclease III [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 224

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 80/224 (35%), Positives = 120/224 (53%), Gaps = 6/224 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            +    L +R+ Y F N + L++ALTH S      ++YER EFLGD IL  +I+  LFN 
Sbjct: 2   KINLERLCRRLNYHFNNIAYLKQALTHCSAG---SDNYERFEFLGDSILSFVIANELFNR 58

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG+LS   + LV  E  +++ARE+DL  ++ +     +      TSI AD +E++
Sbjct: 59  FPLHSEGQLSRLRSFLVKGEMLAEIAREIDLGDYLFLGQGELRSGGFRRTSILADALEAI 118

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFR 180
           +AA+YLDGG+  A   +   +  R          +DAKT+LQE+  A     PEY +T  
Sbjct: 119 LAAIYLDGGMIAAKQIILMLYSSRLDDPDLNHCLKDAKTQLQEFLQASKFALPEYVLTKI 178

Query: 181 SGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
            G +H   F V   I G+   A G   ++R AEQ+AA  +L++ 
Sbjct: 179 EGDEHAQIFHVTCTIEGVSQVAYGTGPNRRKAEQLAAKAMLEQL 222


>gi|150016054|ref|YP_001308308.1| ribonuclease III [Clostridium beijerinckii NCIMB 8052]
 gi|189043303|sp|A6LSM2|RNC_CLOB8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|149902519|gb|ABR33352.1| Ribonuclease III [Clostridium beijerinckii NCIMB 8052]
          Length = 232

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 80/224 (35%), Positives = 123/224 (54%), Gaps = 4/224 (1%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58
           M+      +E+ +G  F N +LL+ ALTHSS  + ++  E  ERLEFLGD +L L I+  
Sbjct: 1   MNRYTLKEIEENLGVFFNNHTLLKTALTHSSFGNQFKDAEYNERLEFLGDSVLQLCITEY 60

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LFN++    EGEL+   + +V   +  ++A++++L S+IR+S            SIQAD 
Sbjct: 61  LFNNYKHKTEGELTKIRSLIVCENSLYEIAKKINLGSYIRMSKGEEITGGRERISIQADA 120

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYK 176
           VE++IAA+YLD GI     F+  ++++   K+   +   D KT+LQE       V  +Y+
Sbjct: 121 VEAIIAAVYLDKGIGFVRDFILLHFEEIINKAINNEIVLDFKTKLQELLQKDGEVVIQYE 180

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +T   GP H  +F   V I      +G   SK+ AEQ AA + L
Sbjct: 181 LTKFEGPPHRRKFFTNVVIDKKLMGEGSGYSKKEAEQNAAKQAL 224


>gi|302338403|ref|YP_003803609.1| ribonuclease III [Spirochaeta smaragdinae DSM 11293]
 gi|301635588|gb|ADK81015.1| ribonuclease III [Spirochaeta smaragdinae DSM 11293]
          Length = 244

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 68/220 (30%), Positives = 115/220 (52%), Gaps = 5/220 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65
            EK +G  F     L  A +H S ++      ++ E+LEFLGD +LGL++S  LF     
Sbjct: 20  FEKHVGIRFRKLEFLNLAFSHRSFANEQGTNVDNNEKLEFLGDSVLGLVVSEYLFALLPD 79

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+L+   + +VS ++ +++AR++ + ++I +             +I AD +E++I +
Sbjct: 80  KAEGDLARVKSFVVSEDSLAEIARKIKVDNYILIGKGEEYSGGRNKKAILADCMEAIIGS 139

Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            YLD G + A +FV KY       +   + ++D KT LQE+   +F   P Y +  ++GP
Sbjct: 140 FYLDSGFKAARSFVLKYLIPEINKVLENRHKKDYKTLLQEYVQKQFKSYPRYSLVKKTGP 199

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           DHD  F + V+I G     G   +K+ AEQ AA    ++ 
Sbjct: 200 DHDRTFWIEVKIDGKVYGPGKGKNKKEAEQHAAGLAYRKL 239


>gi|168184661|ref|ZP_02619325.1| ribonuclease III [Clostridium botulinum Bf]
 gi|237795890|ref|YP_002863442.1| ribonuclease III [Clostridium botulinum Ba4 str. 657]
 gi|182672267|gb|EDT84228.1| ribonuclease III [Clostridium botulinum Bf]
 gi|229262399|gb|ACQ53432.1| ribonuclease III [Clostridium botulinum Ba4 str. 657]
          Length = 234

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 82/223 (36%), Positives = 120/223 (53%), Gaps = 4/223 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
              L+ ++   F N  LL+ ALTHSS ++  +  + YERLEFLGD +L L+IS  L+  +
Sbjct: 8   LKELQYKLKVYFKNEKLLDVALTHSSYANGKKNIKYYERLEFLGDSVLQLIISEHLYQKY 67

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
           +  KEGEL+ +   +V   +  ++A+  DL  ++++S            SI AD VES+I
Sbjct: 68  EDKKEGELTRKRAIIVCENSLYEIAKRWDLGLYLQMSKGEELTGGRERVSILADCVESII 127

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+YLD G++ A  FV K +K+   K+   +   D KT LQE       +T  Y++  + 
Sbjct: 128 AAIYLDKGLDHAREFVMKNFKEIIEKAMKDEIILDYKTTLQEIVQQNNDLTINYELLKQE 187

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H  RF   V I       G+  SK+ AEQ AA E LK  G
Sbjct: 188 GPPHRRRFFTNVTIDNEVRGTGIGYSKKEAEQNAAREALKNLG 230


>gi|118474451|ref|YP_892860.1| ribonuclease III [Campylobacter fetus subsp. fetus 82-40]
 gi|261885507|ref|ZP_06009546.1| ribonuclease III [Campylobacter fetus subsp. venerealis str.
           Azul-94]
 gi|189043299|sp|A0RRM7|RNC_CAMFF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|118413677|gb|ABK82097.1| ribonuclease III [Campylobacter fetus subsp. fetus 82-40]
          Length = 223

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 125/223 (56%), Gaps = 4/223 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           + + LE+ +GY F N++LL++ALTH S+  S   + ERLEFLGD +L L++   LF  F 
Sbjct: 3   KLNRLEEHLGYKFKNKTLLKEALTHKSMKSSV--NNERLEFLGDAVLDLIVGEYLFFKFK 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG LS    +LV+ ++ + ++ ++ L  F+ +S+    +      S+ +D +E+L+ 
Sbjct: 61  DTDEGNLSKLRAALVNEKSFASISSQIRLGDFLYLSAAEDNNNGRNKPSLVSDALEALMG 120

Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YL+ G+E          + +   +      +D KT LQE   A+FGVTP Y++   SG
Sbjct: 121 AIYLESGLEAVKKIFINLLESQYNNIDLQSLGKDYKTTLQEITQARFGVTPRYELVSSSG 180

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           PDH   F + V ++    A+ +  SK+ AEQ AA +VL+   I
Sbjct: 181 PDHKKSFEMAVFLNDKELARAIGNSKKEAEQSAAWKVLQGMNI 223


>gi|312881718|ref|ZP_07741495.1| ribonuclease III [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370608|gb|EFP98083.1| ribonuclease III [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 225

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 74/213 (34%), Positives = 115/213 (53%), Gaps = 7/213 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M++    TLEK++GY F +  L+  ALTH S +  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNS-PIVTLEKKLGYQFDDAELISLALTHRSANSKH---NERLEFLGDSILSFVIADDLY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG++S    +LV  +T +++ RE  L  ++++     K       SI AD VE
Sbjct: 57  QRFPQINEGDMSRMRATLVRGKTLAELGREFQLGDYLKLGPGELKSGGFRRDSILADAVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+Y+D  IEV    +  +++ R  A++ G  ++D KT LQE+   +    P Y VT
Sbjct: 117 AIIGAIYMDSNIEVVRGIILAWYQGRLEAIEPGASQKDPKTRLQEFLQGRRKPLPAYTVT 176

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  H+  FTV  E++G+  P  G   S+R 
Sbjct: 177 NIKGEAHNQEFTVSCEVAGINQPVVGKGTSRRK 209


>gi|163738238|ref|ZP_02145654.1| 4'-phosphopantetheinyl transferase [Phaeobacter gallaeciensis
           BS107]
 gi|161388854|gb|EDQ13207.1| 4'-phosphopantetheinyl transferase [Phaeobacter gallaeciensis
           BS107]
          Length = 228

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 86/216 (39%), Positives = 130/216 (60%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             E RIGY+F+  +LL +ALTH+S+S   ++  +RLEFLGDR+LGL+++T L +   +A 
Sbjct: 9   AFETRIGYSFSQPALLVRALTHASVSSPNRQDNQRLEFLGDRVLGLVMATALLDTDKAAT 68

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG+L+ RFN+LV  ETC+ VAR++DL + +++             ++  D +E++IAA+Y
Sbjct: 69  EGQLAPRFNALVRKETCADVARDIDLGAVLKLGRSETMSGGRRKLALLGDAMEAVIAAVY 128

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
            DGG + A   + + W  R  +     RD KT LQE+A A+    P Y +  R+GPDH P
Sbjct: 129 KDGGFDAAQELILRLWGNRIGRVEADARDPKTTLQEFAQARGEQPPAYVLVERTGPDHQP 188

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            FT+ V++      +    SKR AEQ AA  +L R 
Sbjct: 189 EFTISVQLQDGTEGRATAGSKRQAEQAAAKFLLARL 224


>gi|111115536|ref|YP_710154.1| ribonuclease III [Borrelia afzelii PKo]
 gi|123341290|sp|Q0SMF0|RNC_BORAP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|110890810|gb|ABH01978.1| ribonuclease III [Borrelia afzelii PKo]
          Length = 245

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 117/226 (51%), Gaps = 5/226 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLL 59
             + S   + +   F N  LL  AL+HSS S+      ++ ERLEFLGD +L L+I+  L
Sbjct: 15  KAQLSEFLENLSIDFNNFDLLNTALSHSSYSNELDQKSDNNERLEFLGDSVLNLIITDHL 74

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  + +  EGELS   + +VS ++ S +ARE+DL S+I +      +       I AD +
Sbjct: 75  YKTYPNKSEGELSKARSYIVSEDSLSSIAREIDLGSYILLGRGEESNDGRNKKGILADAI 134

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E+ + A+YLD G  +A  FV   +    R + +    +D K+ LQE+   K+ ++P YK+
Sbjct: 135 EAFVGAIYLDSGFLIATEFVVGLFDMYIRLMFNRGDFKDYKSLLQEYVQKKYKISPNYKL 194

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               GPDHD  F V + +     + G   SK+ AE  AA   LK  
Sbjct: 195 DKEIGPDHDKVFCVELYVGEKFISNGKGKSKKEAEMRAAEVALKAM 240


>gi|148380412|ref|YP_001254953.1| ribonuclease III [Clostridium botulinum A str. ATCC 3502]
 gi|148289896|emb|CAL84004.1| putative ribonuclease III [Clostridium botulinum A str. ATCC 3502]
          Length = 237

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 82/223 (36%), Positives = 120/223 (53%), Gaps = 4/223 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
              L+ ++   F N  LL+ ALTHSS ++  +  + YERLEFLGD +L L+IS  L+  +
Sbjct: 11  LKELQYKLKVYFKNEKLLDVALTHSSYANGKKNIKYYERLEFLGDSVLQLIISEHLYQKY 70

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
           +  KEGEL+ +   +V   +  ++A+  DL  ++++S            SI AD VES+I
Sbjct: 71  EDKKEGELTRKRAIIVCENSLYEIAKRWDLGFYLQMSKGEELTGGRERVSILADCVESII 130

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+YLD G++ A  FV K +K+   K+   +   D KT LQE       +T  Y++  + 
Sbjct: 131 AAIYLDKGLDHAREFVMKNFKEIIEKAMKDEIILDYKTTLQEIVQQNNDLTINYELLKQE 190

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H  RF   V I       G+  SK+ AEQ AA E LK  G
Sbjct: 191 GPPHRRRFFTNVTIDNEVRGTGIGYSKKEAEQNAAREALKNLG 233


>gi|253682200|ref|ZP_04862997.1| ribonuclease III [Clostridium botulinum D str. 1873]
 gi|253561912|gb|EES91364.1| ribonuclease III [Clostridium botulinum D str. 1873]
          Length = 236

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 76/220 (34%), Positives = 112/220 (50%), Gaps = 4/220 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHF 63
            + +E ++   F + +LL+ ALTHSS  +  +   S ERLEFLGD IL L IS  L+N +
Sbjct: 9   LNEVENKLNVKFNDINLLDTALTHSSFVNENKNIYSNERLEFLGDSILQLCISEFLYNKY 68

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
           +   EG L+ +   +V   +  +VA+E ++  +I +S           TSI +D VE++I
Sbjct: 69  EQEPEGFLTKKRALIVCGNSLHEVAKEWNIGKYINMSKGEEMTGGRTRTSILSDCVEAII 128

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           A++YLD G   A  F+   + +   K+   +   D KT+LQE          EYK+    
Sbjct: 129 ASIYLDQGYATAKKFIIDNFNEIIQKANSDQIILDYKTKLQETIQKFGDYNIEYKLVSFD 188

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           GP H  +F   V I       G   SK+ AEQ AA E LK
Sbjct: 189 GPPHRRKFITEVLIDSEVKGVGEGYSKKEAEQNAAKEALK 228


>gi|219685563|ref|ZP_03540380.1| ribonuclease III [Borrelia garinii Far04]
 gi|219672962|gb|EED29984.1| ribonuclease III [Borrelia garinii Far04]
          Length = 246

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 117/226 (51%), Gaps = 5/226 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLL 59
             + S   + +   F N  LL  AL+HSS S+      ++ ERLEFLGD +L L+I+  L
Sbjct: 16  KAQLSEFLENLSIDFNNFDLLNTALSHSSYSNELDQKADNNERLEFLGDSVLNLIITDHL 75

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  + +  EGELS   + +VS ++ S VARE++L S+I +      +       I AD +
Sbjct: 76  YKTYPNKSEGELSKARSYIVSEDSLSSVAREIELGSYILLGRGEESNDGRNKKGILADAI 135

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E+ + A+YLD G  +A  FV   +    R + +    +D K+ LQE+   K+ ++P YK+
Sbjct: 136 EAFVGAIYLDSGFSMATEFVVGLFDMYIRLMFNRGDFKDYKSLLQEYVQKKYKISPSYKL 195

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               GPDHD  F V + +     + G   SK+ AE  AA   LK  
Sbjct: 196 DKEIGPDHDKVFCVELYVGEKFISNGKGKSKKEAEMRAAEVALKAM 241


>gi|163750600|ref|ZP_02157837.1| ribonuclease III [Shewanella benthica KT99]
 gi|161329595|gb|EDQ00586.1| ribonuclease III [Shewanella benthica KT99]
          Length = 230

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 117/224 (52%), Gaps = 6/224 (2%)

Query: 1   MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  ++    L + +GY F  ++LL++ALTH S +  +    ERLEFLGD IL ++IS  L
Sbjct: 6   MEPIKNIPRLCRTLGYQFNQQALLDQALTHRSANSKH---NERLEFLGDSILSIIISDAL 62

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           ++ F    EG+LS    +LV  +  +++  E  L  ++++     K       SI AD V
Sbjct: 63  YHQFPKVTEGDLSRMRATLVCGKMLAEIGFEFKLGDYLKLGPGELKSGGFRRESIIADGV 122

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           E++I A+YLD   E     V  +++ R A+     ++D KT LQE         P YKVT
Sbjct: 123 EAIIGAIYLDADFETCRARVLSWYESRLAIIEPINQKDPKTLLQELLQGFKKPLPVYKVT 182

Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLK 221
              G  H   FTV   +     P  G+  S+R AEQ+AAA+VL+
Sbjct: 183 DIKGEAHAQTFTVECSVEELKKPLVGVASSRRKAEQIAAAKVLE 226


>gi|73667460|ref|YP_303476.1| ribonuclease III [Ehrlichia canis str. Jake]
 gi|90101626|sp|Q3YQX7|RNC_EHRCJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|72394601|gb|AAZ68878.1| RNAse III [Ehrlichia canis str. Jake]
          Length = 226

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 85/219 (38%), Positives = 122/219 (55%), Gaps = 2/219 (0%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHF 63
             T+ K I Y F N  LL +ALTH SI    S + +YERLEFLGD +L ++IS +LFN F
Sbjct: 2   IETISKTIKYHFKNPQLLHEALTHPSIISKDSLKFNYERLEFLGDAVLNIVISEMLFNIF 61

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG L+ +  +LV      +VA+ ++L  FI +S   R    +   +   + +E+LI
Sbjct: 62  PKDTEGNLAKKKTALVCGNQLVKVAQSINLGQFIIMSDGERTCGGANNHNNLENALEALI 121

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            A+YLDGG+  A  F+  +WK  A+      +DAKT LQE+   K    P Y +  +SGP
Sbjct: 122 GAIYLDGGLTAAQNFIHSFWKHTAIHMDIPPQDAKTILQEFIQGKRLPAPTYHIIDKSGP 181

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           DH+P FTV + I      Q    +K+ AEQ AA+ +L +
Sbjct: 182 DHNPIFTVELRIPLYKTIQATGNNKKLAEQKAASLMLNQ 220


>gi|271501621|ref|YP_003334647.1| ribonuclease III [Dickeya dadantii Ech586]
 gi|270345176|gb|ACZ77941.1| ribonuclease III [Dickeya dadantii Ech586]
          Length = 226

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 72/213 (33%), Positives = 110/213 (51%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L+K++GY F    LL +ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPILINRLQKKLGYTFQQYDLLLQALTHRSASSKH---NERLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSNIQTIERLILSWYQTRLDEISPGDKQKDPKTRLQEFLQGRHLPLPTYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SG   P  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGFSEPVVGTGSSRRK 210


>gi|58617572|ref|YP_196771.1| ribonuclease III [Ehrlichia ruminantium str. Gardel]
 gi|75432734|sp|Q5FGH0|RNC_EHRRG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|58417184|emb|CAI28297.1| Ribonuclease III [Ehrlichia ruminantium str. Gardel]
          Length = 227

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 83/218 (38%), Positives = 124/218 (56%), Gaps = 2/218 (0%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           + + K I Y F N  LL +ALTH S+    +   +YERLEFLGD +L L++S +LFN F 
Sbjct: 4   NAISKIIKYDFKNTQLLNEALTHPSVLSKDNNNFNYERLEFLGDAVLNLVVSEMLFNIFP 63

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG L+ +  +LV      ++A+ ++L  FI +S   R    +  ++   + +E+LI 
Sbjct: 64  YDTEGNLAKKKTALVCGTKLVEIAQSINLGIFIIMSDGERSCGGANNSNNLENALEALIG 123

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A+YLDGG++ A  F+  +WK  A       +DAKT LQEWA +K    P Y +  +SGPD
Sbjct: 124 AIYLDGGLKAAKDFIFLFWKNSATHMKVPPQDAKTILQEWAQSKGFPAPSYHIINKSGPD 183

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           H+P FTV V I+          +K+ AEQ AA+ +L +
Sbjct: 184 HNPCFTVEVRINSHETLHATGHNKKLAEQKAASLMLAK 221


>gi|332703537|ref|ZP_08423625.1| Ribonuclease 3 [Desulfovibrio africanus str. Walvis Bay]
 gi|332553686|gb|EGJ50730.1| Ribonuclease 3 [Desulfovibrio africanus str. Walvis Bay]
          Length = 233

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 78/229 (34%), Positives = 115/229 (50%), Gaps = 5/229 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLIST 57
           M   R + ++  + Y F   + L +ALTHSS ++ ++   ES ERLEFLGD +L L IS 
Sbjct: 3   MDMDRLAAIQAELDYHFGQPAYLARALTHSSYANEHELALESNERLEFLGDAVLELAISE 62

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF  F  A EG+L+   + LV  +T +Q AR+L L   I +             S+ AD
Sbjct: 63  CLFQRFPMAHEGQLTRIRSRLVKEKTLAQRARDLGLDRLILLGRGEESQGGRDRDSVLAD 122

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEY 175
            +E+L+ A++LDGG   A  FV + ++    ++      +D KT LQE    +F + P Y
Sbjct: 123 ALEALLGAVFLDGGYLAAREFVSRTFQDLLPETADLPKVKDYKTRLQEITQQRFKIRPIY 182

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
                SGPDH   + V V +   A       S + AEQ AA   ++  G
Sbjct: 183 AQLGTSGPDHARIYEVEVRLPEGASFAATGASLKRAEQNAARLAIEHLG 231


>gi|170761820|ref|YP_001787766.1| ribonuclease III [Clostridium botulinum A3 str. Loch Maree]
 gi|169408809|gb|ACA57220.1| ribonuclease III [Clostridium botulinum A3 str. Loch Maree]
          Length = 234

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 82/223 (36%), Positives = 120/223 (53%), Gaps = 4/223 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
              L+ ++   F N  LL+ ALTHSS ++  +  + YERLEFLGD +L L+IS  L+  +
Sbjct: 8   LKELQYKLKVYFKNEKLLDVALTHSSYANGKKNIKYYERLEFLGDSVLQLIISEHLYQKY 67

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
           +  KEGEL+ +   +V   +  ++A+  DL  ++++S            SI AD VES+I
Sbjct: 68  EDKKEGELTRKRAIIVCENSLYEIAKRWDLGFYLQMSKGEELTGGRERVSILADCVESII 127

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+YLD G++ A  FV K +K+   K+   +   D KT LQE       +T  Y++  + 
Sbjct: 128 AAIYLDKGLDHAREFVMKNFKEIIEKAMKDEIILDYKTTLQEIVQQNNDLTINYELLKQE 187

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP H  RF   V I       G+  SK+ AEQ AA E LK  G
Sbjct: 188 GPPHRRRFFTNVTIDNEIRGTGIGYSKKEAEQNAAREALKNLG 230


>gi|269140067|ref|YP_003296768.1| ribonuclease III [Edwardsiella tarda EIB202]
 gi|267985728|gb|ACY85557.1| ribonuclease III [Edwardsiella tarda EIB202]
 gi|304559895|gb|ADM42559.1| Ribonuclease III [Edwardsiella tarda FL6-60]
          Length = 226

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 74/213 (34%), Positives = 113/213 (53%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F  + LL +ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFRQQDLLMQALTHRSASSKH---NERLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  ++  R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGIFLDSDIQTIERLILDWYHSRLEEISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SGL AP  G+  S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSAPVVGVGSSRRK 210


>gi|57239534|ref|YP_180670.1| ribonuclease III [Ehrlichia ruminantium str. Welgevonden]
 gi|58579518|ref|YP_197730.1| ribonuclease III [Ehrlichia ruminantium str. Welgevonden]
 gi|81352757|sp|Q5HA74|RNC_EHRRW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|57161613|emb|CAH58541.1| ribonuclease III [Ehrlichia ruminantium str. Welgevonden]
 gi|58418144|emb|CAI27348.1| Ribonuclease III [Ehrlichia ruminantium str. Welgevonden]
          Length = 227

 Score =  253 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 84/218 (38%), Positives = 124/218 (56%), Gaps = 2/218 (0%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           + + K I Y F N  LL +ALTH S+    +   +YERLEFLGD +L L+IS +LFN F 
Sbjct: 4   NAISKIIKYDFKNTQLLNEALTHPSVLSKDNNNFNYERLEFLGDAVLNLVISEMLFNIFP 63

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG L+ +  +LV      ++A+ ++L  FI +S   R    +  ++   + +E+LI 
Sbjct: 64  YDTEGNLAKKKTALVCGTKLVEIAQSINLGIFIIMSDGERSCGGANNSNNLENALEALIG 123

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A+YLDGG++ A  F+  +WK  A       +DAKT LQEWA +K    P Y +  +SGPD
Sbjct: 124 AIYLDGGLKAAKDFIFLFWKNSATHMKVPPQDAKTILQEWAQSKGFPAPSYHIINKSGPD 183

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           H+P FTV V I+          +K+ AEQ AA+ +L +
Sbjct: 184 HNPCFTVEVRINSHETLHATGHNKKLAEQKAASLMLAK 221


>gi|225180933|ref|ZP_03734381.1| Ribonuclease III [Dethiobacter alkaliphilus AHT 1]
 gi|225168414|gb|EEG77217.1| Ribonuclease III [Dethiobacter alkaliphilus AHT 1]
          Length = 233

 Score =  253 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 109/229 (47%), Gaps = 6/229 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M     + L K++     NR +  +ALTHSS +H +        ERLEFLGD +L L+IS
Sbjct: 1   MGKKDLNYLFKQLNIEPKNREIYIQALTHSSYAHEHNLGSHAHNERLEFLGDAVLELVIS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  F    EG+L+     +V  ++  ++A  L+L  ++R+             S+ A
Sbjct: 61  EALFKRFPLLPEGKLTRFRAGMVCEDSLFKIANSLELGKYLRLGKGEAASGGRQRPSLLA 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPE 174
           D  E+++ A+YLD G  V    V   +      +  G  R D KT +QE+  A    TPE
Sbjct: 121 DAFEAMLGAMYLDQGFYVVQETVTGIFAPLFEDMAKGSMRHDYKTLMQEYTQASLATTPE 180

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           Y++    GPDH   F   + ++     +G   SK+ AEQ AA    ++ 
Sbjct: 181 YRIVAEQGPDHSKVFVAQLLLNREVYGEGSGRSKKEAEQEAARVAYQQL 229


>gi|32490945|ref|NP_871199.1| hypothetical protein WGLp196 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|30173145|sp|Q8D305|RNC_WIGBR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|25166151|dbj|BAC24342.1| rnc [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 226

 Score =  253 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 116/223 (52%), Gaps = 6/223 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M  L ++ L+K++GY F N  +L++ALTH S S    ++ ERLEFLGD IL  +IS  L+
Sbjct: 1   MKNLFFNKLQKKMGYLFHNNIILKQALTHRSFS---SKNNERLEFLGDSILNYIISDALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N+F +  EG+LS   + LV   T +++ARE  L  ++ +     K       SI ++ +E
Sbjct: 58  NNFTNIPEGKLSQMRSYLVRGNTLAEIAREFCLGDYLILGIGEVKTGGKNRDSILSNAME 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I  ++LD  I      V  ++K R   +     ++D KT LQE+        P+Y + 
Sbjct: 118 AIIGGIFLDSNINKTHEIVISWYKNRLYSMSLKNLKKDPKTRLQEYLQGNKFSLPQYYIK 177

Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVL 220
             +G  H+  FT+   I        G   ++R AEQ AA + L
Sbjct: 178 NITGESHNQEFTICCFIDDLKKSVIGYGKTRRKAEQSAAKQAL 220


>gi|238920905|ref|YP_002934420.1| ribonuclease III [Edwardsiella ictaluri 93-146]
 gi|259491900|sp|C5B8Y2|RNC_EDWI9 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|238870474|gb|ACR70185.1| ribonuclease III, putative [Edwardsiella ictaluri 93-146]
          Length = 226

 Score =  253 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 74/213 (34%), Positives = 113/213 (53%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F    LL +ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFRQHDLLMQALTHRSASSKH---NERLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGIFLDSDIQTIERLILDWYRSRLEEISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SGL AP  G+  S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSAPVVGVGSSRRK 210


>gi|306819680|ref|ZP_07453341.1| ribonuclease III [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304552246|gb|EFM40176.1| ribonuclease III [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 233

 Score =  253 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/221 (33%), Positives = 121/221 (54%), Gaps = 4/221 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
              +E  IGY F N++ L+ ALTHSS  + ++  +  ERLEFLGD +LGL++S  +F + 
Sbjct: 9   LEQVENTIGYKFKNKNYLQIALTHSSYVNEHKLTKDNERLEFLGDSVLGLIVSNYIFAYK 68

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            S KEGEL+   +++V  ++   +A +L +  +I++    +    +   SI AD VE++I
Sbjct: 69  SSLKEGELTKIRSTIVCEKSLMHIAEKLKIGQYIKLGKGEKISGGAKRASILADAVEAMI 128

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+YLD   +    +V  +       +   ++  D K++LQE      G T +Y++    
Sbjct: 129 AAIYLDSDFDNVSKYVLDWLGDTIKNALDNKKNDDYKSKLQEEVQKVRGRTLKYELIAMK 188

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           GPDH+  FT+ V         G   SK+ AEQ+AA + L++
Sbjct: 189 GPDHERTFTIGVYCDNKLIGTGKGHSKKEAEQLAAKDALEK 229


>gi|329116187|ref|ZP_08244904.1| ribonuclease III [Streptococcus parauberis NCFD 2020]
 gi|326906592|gb|EGE53506.1| ribonuclease III [Streptococcus parauberis NCFD 2020]
          Length = 230

 Score =  253 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 69/220 (31%), Positives = 112/220 (50%), Gaps = 5/220 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
           L+      FA+R+LLE A TH+S ++ ++       ERLEFLGD +L L+IS  LF  + 
Sbjct: 8   LKDSFDITFADRNLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIISEYLFEKYP 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EG++S + + +V  E+ +  +R     ++I++     K       +I  D+ E+ + 
Sbjct: 68  NKAEGDMSKQRSMIVREESLAGFSRFCTFDNYIKLGKGEEKSGGRNRDTILGDLFEAFLG 127

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           AL LD G+E    F+ +    +  K   +   D KT LQE   ++  +  +Y+V    GP
Sbjct: 128 ALLLDKGVEKVRKFLYQVMIPQVEKGTFEQVMDYKTNLQELLQSQGDIIIDYQVISEEGP 187

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            HD  F V V  +    +QG   SK+ AEQ AA   L++ 
Sbjct: 188 AHDKVFEVAVLSNEKTLSQGKGKSKKLAEQAAAKNALEQL 227


>gi|56459918|ref|YP_155199.1| RNase III, dsRNA-specific ribonuclease [Idiomarina loihiensis L2TR]
 gi|81363596|sp|Q5R106|RNC_IDILO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|56178928|gb|AAV81650.1| Rnase III, dsRNA-specific ribonuclease [Idiomarina loihiensis L2TR]
          Length = 229

 Score =  253 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 69/213 (32%), Positives = 114/213 (53%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           +     + LEK +GY+F  + LL +A+TH S S ++    ERLEFLGD ILGL+I+  L+
Sbjct: 3   LPKPPLTELEKIVGYSFEQQGLLHQAMTHRSASSTH---NERLEFLGDSILGLVIAEALY 59

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG+LS    ++V   + +++ +++ L  F+ +     K       SI AD VE
Sbjct: 60  QKFPKVAEGDLSRMRAAIVCGRSLAKLGKKMGLGDFLSLGQGELKSGGYRRESILADAVE 119

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD  ++     +  +++ +   ++ G  ++D KT LQE   A+    PEY V 
Sbjct: 120 AIIGAIYLDSDMDTIRQVILNWFEPQLTLIEPGTSQKDPKTRLQELLQARQKPLPEYDVV 179

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRA 210
              G  H+ +FTV   + G+  P +G   S+R 
Sbjct: 180 ATQGQAHNQQFTVNCSVEGIESPFKGTGTSRRK 212


>gi|227328581|ref|ZP_03832605.1| ribonuclease III [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 226

 Score =  253 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 70/213 (32%), Positives = 111/213 (52%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F    LL +ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPILINRLQRKLGYTFQQYDLLLQALTHRSASSKH---NERLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPKVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGIFLDSDIQTIERLILNWYQTRLDEISPGDKQKDPKTRLQEFLQGRHLPLPTYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRA 210
              G  HD  FT+  ++SG + +  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGFSESVIGTGSSRRK 210


>gi|56417113|ref|YP_154187.1| ribonuclease III [Anaplasma marginale str. St. Maries]
 gi|81358903|sp|Q5P9U8|RNC_ANAMM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|56388345|gb|AAV86932.1| ribonuclease III [Anaplasma marginale str. St. Maries]
          Length = 232

 Score =  253 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 78/216 (36%), Positives = 113/216 (52%), Gaps = 1/216 (0%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            + +  GY F +  LL +ALTH  +S+    +YERLEFLGD +L + +S +L+  F    
Sbjct: 12  KIYEATGYQFRDLDLLLEALTHPRLSYKSAANYERLEFLGDAVLSMTVSEMLYRLFPDDD 71

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG L+ +  +LV      ++AR + L   I +S   R    S       + +E+LI A+Y
Sbjct: 72  EGCLTRKRTALVRGSEVVEIARSIGLGELILMSGGERTCGGSDNPGTLENALEALIGAMY 131

Query: 128 LDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           +DGG E   +F+ K+W  RA        +D KT LQEW   +    P YK+  +SGP+H 
Sbjct: 132 MDGGPEAYRSFIHKHWLARAQHMSYTPPQDPKTALQEWVQGRGWAMPLYKLVSKSGPEHK 191

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           P F V V I       G   SK+ AEQ AA  +LK+
Sbjct: 192 PVFAVEVSIQEHGNVLGTGSSKKLAEQEAAKLMLKK 227


>gi|282892110|ref|ZP_06300585.1| hypothetical protein pah_c207o041 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498005|gb|EFB40349.1| hypothetical protein pah_c207o041 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 236

 Score =  253 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 84/227 (37%), Positives = 119/227 (52%), Gaps = 4/227 (1%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLL 59
           A   S +E R+GY F +R LL  A  H S  +  +E     ERLEFLGD +LGLLI+  L
Sbjct: 8   AQNISNIELRLGYKFQDRDLLALAFVHRSFINENREIHEHNERLEFLGDSVLGLLIADYL 67

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           + +  S  EGELS   + LV A +C     +LDL  F+ +    R +      SI AD++
Sbjct: 68  YRYLPSTPEGELSYLKSRLVEASSCVTYIHKLDLEQFLLLGRGERMNDGRGRESILADLL 127

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVT 178
           E++I A+YLDGG+E A  F+ K +        K   R+ K  LQ++   K+  TP Y V 
Sbjct: 128 EAIIGAVYLDGGLESAKAFLFKNFSTEIEAILKTPVRNWKALLQDYCQKKYQTTPSYHVI 187

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
              GPDH   F + V ++     +G   SK+ A+Q AA + L +  I
Sbjct: 188 DEKGPDHSKTFKISVFLNDEEVGKGEGGSKKEAQQKAAEDALSKMDI 234


>gi|253581846|ref|ZP_04859070.1| ribonuclease III [Fusobacterium varium ATCC 27725]
 gi|251836195|gb|EES64732.1| ribonuclease III [Fusobacterium varium ATCC 27725]
          Length = 235

 Score =  253 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 123/229 (53%), Gaps = 7/229 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLF 60
            Y  LE  +GY+F N+ LL+ +L H S  + +    + S ERLE LGD +L L+++  L+
Sbjct: 4   NYLELEGNLGYSFNNKELLKNSLIHRSFGNEHWRYKKISNERLELLGDAVLDLVVTEYLY 63

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
              +S+ EG+L+   + +VS    + +++++D+  ++ +S           +SI  D  E
Sbjct: 64  KSHESSTEGDLAKIKSMVVSEPVLASISKKMDVGKYLLLSKGEEMTGGRERSSILGDAFE 123

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +++ A+YLD   E A  +   + K     +   +   D KT LQE++  ++ + P Y+V 
Sbjct: 124 AILGAIYLDSDFETAKKYALSHIKDSIDHVDKNEDILDFKTILQEYSQREYKIIPSYEVI 183

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
             +GPDH   F + V I G    +G   +K++AEQ AA E+ K+ G+ T
Sbjct: 184 RETGPDHQKVFEIEVRI-GERTGRGTGKNKKSAEQSAAKELCKKLGVKT 231


>gi|58584360|ref|YP_197933.1| dsRNA-specific ribonuclease [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
 gi|75498100|sp|Q5GTI3|RNC_WOLTR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|58418676|gb|AAW70691.1| dsRNA-specific ribonuclease [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
          Length = 243

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 85/226 (37%), Positives = 124/226 (54%), Gaps = 5/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L   T+ K I Y F N ++LE+ALTH S++        E+YERLEFLGD IL +++S
Sbjct: 11  MEDLN-DTISKIINYRFKNDAILEEALTHPSLNKRNSKNQIENYERLEFLGDSILNMIVS 69

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
            +LF  F   KEG L+ R   LV   T + VA+E+ L +FI +++  R +          
Sbjct: 70  AILFRLFPKEKEGALARRKTDLVCGNTIANVAKEIKLGNFIIMNNSERCNGGKRNLKNLE 129

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           + +E+LI A+Y+DGG      FV K+W++RA       +D KT LQEW        PEY+
Sbjct: 130 NALEALIGAIYIDGGFANVKKFVTKHWEERAKGMLSLPQDPKTSLQEWTQKNKLPLPEYE 189

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +  ++GP H P FT+ + I           SK+ AEQ AA  +L++
Sbjct: 190 LMKQTGPAHSPEFTISICIENYGKVFACASSKKVAEQKAAELMLEK 235


>gi|163740176|ref|ZP_02147570.1| ribonuclease III [Phaeobacter gallaeciensis 2.10]
 gi|161386034|gb|EDQ10409.1| ribonuclease III [Phaeobacter gallaeciensis 2.10]
          Length = 228

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 86/216 (39%), Positives = 129/216 (59%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             E RIGY+F+  +LL +ALTH+S+S   ++  +RLEFLGDR+LGL+++T L +   +A 
Sbjct: 9   AFETRIGYSFSQPALLVRALTHASVSSPNRQDNQRLEFLGDRVLGLVMATALLDTDKAAT 68

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG+L+ RFN+LV  ETC+ VAR++DL + +++             ++  D +E++IAA+Y
Sbjct: 69  EGQLAPRFNALVRKETCADVARDIDLGAVLKLGRSETMSGGRRKLALLGDAMEAVIAAVY 128

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
            DGG + A   + + W  R  +     RD KT LQE+A A+    P Y +  R GPDH P
Sbjct: 129 KDGGFDAAQELILRLWGNRIGRVEADARDPKTTLQEFAQARGEQPPAYVLVERKGPDHQP 188

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            FT+ V++      +    SKR AEQ AA  +L R 
Sbjct: 189 EFTISVQLQDGTEGRATAGSKRQAEQAAAKFLLARL 224


>gi|163793042|ref|ZP_02187018.1| SsrA-binding protein [alpha proteobacterium BAL199]
 gi|159181688|gb|EDP66200.1| SsrA-binding protein [alpha proteobacterium BAL199]
          Length = 227

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 85/217 (39%), Positives = 123/217 (56%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             S L + +G+ F +  +L +A+TH+S       +YERLEFLGDR+L L ++  L + F 
Sbjct: 7   DLSHLAEVLGHTFNHPDILRRAVTHASAEPRAWNAYERLEFLGDRVLALAVAEQLLDRFP 66

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             +EG ++ R  SLV  ET + VA  +DL  ++ VS            +I +D +E++IA
Sbjct: 67  HEREGAIAKRHVSLVRRETLADVAHTIDLGRYLIVSRGEDDAGARASDTILSDSMEAVIA 126

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           ALYLDGG+  A  F+ K+W        +  +D KT LQEWA  +    P Y    ++GP 
Sbjct: 127 ALYLDGGLAAAQKFILKHWNPLLEMDHRPPQDPKTGLQEWAQGRRLPLPVYTTVEQTGPA 186

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           H P FTV V + GLAP +    SKR AEQ+AAA +L+
Sbjct: 187 HAPEFTVEVVVEGLAPQRASGKSKRLAEQLAAAAMLE 223


>gi|126733741|ref|ZP_01749488.1| ribonuclease III [Roseobacter sp. CCS2]
 gi|126716607|gb|EBA13471.1| ribonuclease III [Roseobacter sp. CCS2]
          Length = 226

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 85/220 (38%), Positives = 130/220 (59%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           +   +   +R+G++F    +L +A+THSSI   +++  +RLEFLGDR+LGL+++  L   
Sbjct: 4   SAELTAFSQRLGHSFDKPEILIRAVTHSSIVSPHRDDNQRLEFLGDRVLGLVMAEALLKA 63

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
             SA EG L+ R+N+LV  E C++VAR++DL + +++     K       ++ AD +E++
Sbjct: 64  DPSAPEGLLAPRYNALVRREACAEVARQIDLGAVLKLGRSEMKSGGRRKEALLADAMEAV 123

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           IAA+Y DGG + A   + + W  R        RDAKT LQEWA A+  V P+Y    R+G
Sbjct: 124 IAAVYQDGGFDAARAAILRLWGDRIHNVAADARDAKTALQEWAQARGEVPPQYVEVARTG 183

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           PDH P FT+   ++     Q    SKR AEQ AA  +LK+
Sbjct: 184 PDHQPVFTIEARLASGPSEQATAGSKRQAEQAAATALLKK 223


>gi|331701485|ref|YP_004398444.1| ribonuclease 3 [Lactobacillus buchneri NRRL B-30929]
 gi|329128828|gb|AEB73381.1| Ribonuclease 3 [Lactobacillus buchneri NRRL B-30929]
          Length = 236

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 71/219 (32%), Positives = 110/219 (50%), Gaps = 5/219 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
           L++  G    ++ LL++A T +S  + ++    + YERLEFLGD +L L++S  +F  + 
Sbjct: 9   LKQDFGIHIDDQDLLDEAFTQASYVNEHRGEGLKFYERLEFLGDAVLQLIVSDYIFKRYP 68

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              +G L+    ++V+ ++ S  ARE     +IR+     K       S+  D+ ES + 
Sbjct: 69  KMPQGRLTRLRAAMVNEQSFSTFARECHFNQYIRLGKGEEKAGARDRDSLLCDIFESFVG 128

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            LYLD G      FV K    +  +       D KTELQE A A   V  +Y++    GP
Sbjct: 129 CLYLDQGQAEVTRFVTKVIFPKLDEGMFAEFFDHKTELQELAQADGPVAIDYELVDEYGP 188

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           D+D  F V V I G     G+  SK+ AEQ AA + L++
Sbjct: 189 DNDRSFKVNVSIDGKLYGVGIGHSKKGAEQKAAQQALEQ 227


>gi|254463926|ref|ZP_05077337.1| ribonuclease III [Rhodobacterales bacterium Y4I]
 gi|206684834|gb|EDZ45316.1| ribonuclease III [Rhodobacterales bacterium Y4I]
          Length = 225

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 89/222 (40%), Positives = 131/222 (59%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           +      E+RIG+ FA   LL++A+TH+S+S S ++  +RLEFLGDR+LGL+++T L  H
Sbjct: 4   SKELRAFEERIGHKFARPELLQRAVTHASVSSSNRKDNQRLEFLGDRVLGLVMATALLEH 63

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
             +A EG+L+ RFN+LV  E C+ VA+E+DL + +++             ++  D +E++
Sbjct: 64  DKTATEGQLAPRFNALVRKEACADVAKEIDLGAVLKLGRSEMMSGGRRKQALLGDAMEAV 123

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           IAA+Y D G + A   + + W  R  +     RDAKT LQEWA A+    P Y    RSG
Sbjct: 124 IAAVYKDAGFDAAAEMILRLWGTRIHQVETDARDAKTSLQEWAQARGQQVPIYVEVSRSG 183

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           PDH P FT+   +     AQ    SKR AEQ AA  +L++ G
Sbjct: 184 PDHAPVFTIAARLQDGTEAQATAGSKRQAEQAAAKALLEQLG 225


>gi|172057915|ref|YP_001814375.1| ribonuclease III [Exiguobacterium sibiricum 255-15]
 gi|171990436|gb|ACB61358.1| Ribonuclease III [Exiguobacterium sibiricum 255-15]
          Length = 256

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/220 (33%), Positives = 108/220 (49%), Gaps = 4/220 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFN 61
           ++  L++R+   FAN  LL++A THSS  +  +E     ERLEFLGD +L L +S  LF 
Sbjct: 30  KFGQLQERLDIHFANVELLKQAFTHSSFVNEQRESDGDNERLEFLGDAVLELTVSRYLFQ 89

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           H+    EGEL+    ++V   +  Q A   + +  I +             ++ ADV E+
Sbjct: 90  HYPERSEGELTKLRAAIVCEPSLVQFANHYEFSEMILLGKGEELTGGRNRPALLADVFEA 149

Query: 122 LIAALYLDGGIEVAGTFV-DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            I ALYLD GIE A  F+ +  + + A    + + D K++LQE          EY++   
Sbjct: 150 FIGALYLDQGIEAAERFLAEAVFPKVASGFFEEQTDFKSQLQEAIQRVGLGQIEYEIIEE 209

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            GP H   F   V I+      G   SK+ AEQ AA + L
Sbjct: 210 RGPAHSREFISRVHIADKLEGIGTGRSKKEAEQQAAKQAL 249


>gi|257468859|ref|ZP_05632953.1| ribonuclease III [Fusobacterium ulcerans ATCC 49185]
 gi|317063109|ref|ZP_07927594.1| ribonuclease III [Fusobacterium ulcerans ATCC 49185]
 gi|313688785|gb|EFS25620.1| ribonuclease III [Fusobacterium ulcerans ATCC 49185]
          Length = 235

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 123/229 (53%), Gaps = 7/229 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLF 60
            Y  LE  +GY+F N+ LL+ +L H S  + +    + S ERLE LGD +L L+++  L+
Sbjct: 4   NYLELEGNLGYSFNNKELLKNSLIHRSFGNEHWRYKKISNERLELLGDAVLDLVVTEYLY 63

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
              +S+ EG+L+   + +VS    + +++++D+  ++ +S           +SI  D  E
Sbjct: 64  KSHESSTEGDLAKIKSMVVSEPVLASISKKMDVGKYLLLSKGEEMTGGRERSSILGDAFE 123

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +++ A+YLD   E A  +   + +     +   +   D KT LQE++  ++ + P Y+V 
Sbjct: 124 AILGAIYLDSDFETAKKYALSHIQDSIDHVDKNEDILDFKTILQEYSQREYKIIPSYEVI 183

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
             +GPDH   F + V+I      +G   +K++AEQ AA E+ K+ G+ T
Sbjct: 184 RETGPDHQKIFEIEVKIGDRT-GRGTGKNKKSAEQSAAKELCKKLGVKT 231


>gi|262037510|ref|ZP_06010969.1| ribonuclease III [Leptotrichia goodfellowii F0264]
 gi|261748440|gb|EEY35820.1| ribonuclease III [Leptotrichia goodfellowii F0264]
          Length = 238

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 111/227 (48%), Gaps = 6/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M       L ++I Y F N S L++ALTH S S+ +++      E+LEFLGD +L L+ +
Sbjct: 1   MKIKNVEELMEKIDYKFRNESYLKEALTHRSFSNEHEKSKNFDNEKLEFLGDAVLNLITT 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             ++N      EGEL+   + ++S    S +A E+ L  ++ +S+           SI  
Sbjct: 61  EYIYNSGKGKNEGELAKLKSQIISEPVFSAIAAEIGLGDYLYLSNGEESSGGRKRKSILG 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPE 174
           D  E+LI A++LD     A     K+   +           D KT LQE   +K+   PE
Sbjct: 121 DAFEALIGAVFLDSDYYTAKNTALKFLPDKINNLEDIEGIIDYKTVLQEVFQSKYKKMPE 180

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           Y++    GPDH+  F + V+++      G   SK+ AE+ AA E ++
Sbjct: 181 YEILDTKGPDHNKVFEISVKLNNKIIGIGRGKSKKEAEKRAAKEAIE 227


>gi|237752001|ref|ZP_04582481.1| ribonuclease III [Helicobacter winghamensis ATCC BAA-430]
 gi|229376568|gb|EEO26659.1| ribonuclease III [Helicobacter winghamensis ATCC BAA-430]
          Length = 223

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 123/222 (55%), Gaps = 4/222 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +     EK +GY F  ++LL++ALTH S         ERLEFLGD +L L+I   L+N F
Sbjct: 2   VNLKHFEKTLGYHFKAQNLLKEALTHKSAKKGT--HNERLEFLGDAVLDLIIGEFLYNKF 59

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            +++EGELS    S+V+ +  +++AR L++  ++ +S+   ++      SI ++  E++I
Sbjct: 60  PNSREGELSKMRASMVNEKAFAKIARYLNIGEYLFISNSEEQNNGRKKDSILSNAFEAVI 119

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+YL+ G+++A   +         ++       D KT LQE   AKFG TPEY +   S
Sbjct: 120 GAIYLESGLDIARNLMHNLLSAVYPSIDLNSLFYDHKTALQELTQAKFGETPEYVLLDSS 179

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           GPDH+  F + V+I G   A+    SK+ A+Q+ A   ++  
Sbjct: 180 GPDHNKNFLIGVKIQGKEFAKASGKSKKEAQQICAKIAIEAL 221


>gi|116331646|ref|YP_801364.1| ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|122280610|sp|Q04R64|RNC_LEPBJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|116125335|gb|ABJ76606.1| Ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 247

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 79/223 (35%), Positives = 113/223 (50%), Gaps = 5/223 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFN 61
            +  L K+IG  F+       A  HSS  +   E     ERLEFLGD +LGL+ +  LF 
Sbjct: 20  SFKKLSKKIGIKFSKIEYYNTAFIHSSYKNENPEILEDNERLEFLGDSVLGLVAARSLFQ 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +  A EGELS   + +VS    + +A +L+L  ++ +    +         I A++ ES
Sbjct: 80  KYPKASEGELSRIKSKIVSTPILNSIAEKLNLGEYLLLGKGEKNSQGKGRRKIAANLFES 139

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           L+ A+YLD G EVA  F+ ++  + A      +  RD KT+LQE++   F   P Y++  
Sbjct: 140 LVGAIYLDRGFEVAEKFIVQHLLEFAENPDMEESVRDYKTQLQEYSQKHFKTLPVYRMKG 199

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            SGPDH   F V V I     A G   SK+ AEQ AA E+  R
Sbjct: 200 ESGPDHSKTFQVSVRIRDQWEASGYGASKKIAEQNAAKELYIR 242


>gi|39997326|ref|NP_953277.1| ribonuclease III [Geobacter sulfurreducens PCA]
 gi|81701827|sp|Q74AX1|RNC_GEOSL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|39984217|gb|AAR35604.1| ribonuclease III [Geobacter sulfurreducens PCA]
 gi|298506263|gb|ADI84986.1| ribonuclease III [Geobacter sulfurreducens KN400]
          Length = 248

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 83/221 (37%), Positives = 122/221 (55%), Gaps = 6/221 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
           LE  IGY F +R  L++ALTH S  +  +       ERLEF GD ILG  I  +L  H+ 
Sbjct: 19  LETSIGYRFTDRRFLDEALTHRSWLNEVRSPTVPDNERLEFFGDAILGFCIGKMLLRHYP 78

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            ++EG L+   ++LV  ET + +A  ++L S++R+     +       S+ A+ +E+L+A
Sbjct: 79  ESREGALARMKSALVGEETLADLAAAVELGSYLRLGRGEERSGGRHRRSLLANALEALLA 138

Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YLDGG+      VD ++  R   + +G   RD KT+ QE A A++G  P Y +   SG
Sbjct: 139 AMYLDGGMAPVERLVDAWFGPRLAGVAAGIKGRDFKTDFQELAQAQYGGLPRYVLVDTSG 198

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           P HD RFTV   +      QG   SK+ AEQ AA + L+R 
Sbjct: 199 PAHDLRFTVAAYVGERLLGQGTGRSKKEAEQAAARQCLERL 239


>gi|289578474|ref|YP_003477101.1| ribonuclease III [Thermoanaerobacter italicus Ab9]
 gi|297544750|ref|YP_003677052.1| ribonuclease III [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
 gi|289528187|gb|ADD02539.1| ribonuclease III [Thermoanaerobacter italicus Ab9]
 gi|296842525|gb|ADH61041.1| ribonuclease III [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
          Length = 246

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 75/210 (35%), Positives = 112/210 (53%), Gaps = 5/210 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTLLFN 61
             S LEK+I Y+F N+ LL +ALTHSS +H  + S    ERLEFLGD +L L+IS  L+ 
Sbjct: 19  NLSELEKKINYSFKNKDLLIEALTHSSWAHEGKNSKISNERLEFLGDSVLSLVISEYLYK 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +    +EG LS     +V   + ++ ARE+ L +F+ +             S+ AD +E+
Sbjct: 79  NRKDLEEGSLSKYRAEIVCEPSLARCAREIGLGNFLLIGKGEEMTGGRERDSLLADAMEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           L+AA+YLDGG+EV    +   ++     +  G   RD KT+LQE   +       Y++  
Sbjct: 139 LLAAVYLDGGLEVVRNIILDLFRNIIEEVLEGLIYRDYKTKLQEVVQSMGIGKITYELVK 198

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
             GPDH+  F   V I  +A  +G   SK+
Sbjct: 199 EIGPDHNKTFITKVRIGDVALGEGYGKSKK 228


>gi|218291547|ref|ZP_03495421.1| Ribonuclease III [Alicyclobacillus acidocaldarius LAA1]
 gi|258511329|ref|YP_003184763.1| ribonuclease III [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|218238642|gb|EED05867.1| Ribonuclease III [Alicyclobacillus acidocaldarius LAA1]
 gi|257478055|gb|ACV58374.1| ribonuclease III [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 241

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 5/209 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++  L+  +   F + +LL++A TH+S  + ++    E  ERLEFLGD +L L++S  L+
Sbjct: 4   KWLELQGLLNLQFNDVNLLKQAFTHASYRNEHRKLHVEDNERLEFLGDAVLELVVSDFLY 63

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             +    EGEL+    ++V   +  + A+ L    +IR+     +       ++ ADV E
Sbjct: 64  RTYPKMPEGELTRMRAAIVCEASLVRFAKRLSFDQYIRLGRGEERSGGRSRPALLADVFE 123

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           + + ALYLD G+E    FV  +     L       D KT LQE    +      Y +   
Sbjct: 124 AFLGALYLDQGLEAVRQFVHTHMVP-YLPDVSAGLDYKTALQELVQQRHQTPVRYVIVEE 182

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            GP H   F V VE+ G     G+  SK+
Sbjct: 183 RGPAHAREFVVQVELGGEVRGVGIGRSKK 211


>gi|218960589|ref|YP_001740364.1| dsRNA-specific ribonuclease [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729246|emb|CAO80157.1| dsRNA-specific ribonuclease [Candidatus Cloacamonas
           acidaminovorans]
          Length = 255

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 72/229 (31%), Positives = 113/229 (49%), Gaps = 8/229 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY------ERLEFLGDRILGLLISTL 58
             S L+K+I Y F + +LL  ALTH S  H + E +      ER+EFLGD ILG ++S  
Sbjct: 27  SLSQLQKKIDYTFHDPTLLYAALTHKSYLHRHFEDHKTPSPFERMEFLGDSILGFIVSKE 86

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF      +EG+LS   + +VS    +  A+ +DL  ++ +S + ++   +   SI +D 
Sbjct: 87  LFTRHPDEQEGKLSKLKSKIVSETYLTLKAKAIDLGKYLLLSPEEQQSGGASKPSILSDA 146

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYK 176
           +E+LI A+YLD GI  A  F+  +      ++       + K+ LQE+  ++    P Y 
Sbjct: 147 MEALICAIYLDSGISAATRFIRNHILNNYQETVTREELVNYKSILQEYMQSRNQPPPTYV 206

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
                GP+H   F V V         G   +K+ A Q AA    ++ GI
Sbjct: 207 TVAEQGPEHHKTFVVEVRWGNKLLGTGKGNTKKNAHQEAARMACQKLGI 255


>gi|88608789|ref|YP_506782.1| ribonuclease III [Neorickettsia sennetsu str. Miyayama]
 gi|88600958|gb|ABD46426.1| ribonuclease III [Neorickettsia sennetsu str. Miyayama]
          Length = 222

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 78/220 (35%), Positives = 121/220 (55%), Gaps = 3/220 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +    L+  +G  F N+ LL +ALTH S+      SYERLEFLGD +L L+I+++L++ F
Sbjct: 1   MELEELQSLLGVYFKNKDLLVEALTHPSV--EKCPSYERLEFLGDAVLNLVIASMLYDLF 58

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG LS R ++L+   T + +AR+++L  +IR+SS          TS   +V+E+L+
Sbjct: 59  PGDPEGRLSHRQSALICKNTLAMLARQMNLGDYIRLSSSEEAGGGRDKTSNLENVLEALV 118

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            A++LD G+E    F+ K W   A++S     + K+ LQE   AK    P Y V  RSGP
Sbjct: 119 GAIFLDAGLETVTCFIKKRWYGLAVQSDSIEPNPKSTLQELLQAKGMKPPIYNVINRSGP 178

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            H P F + + + G    +    SK+  E+ AA  +L+  
Sbjct: 179 AHLPIFEIEIRVDGKKR-RATGKSKKLGEENAARMMLEEL 217


>gi|90416440|ref|ZP_01224371.1| ribonuclease III [marine gamma proteobacterium HTCC2207]
 gi|90331639|gb|EAS46867.1| ribonuclease III [marine gamma proteobacterium HTCC2207]
          Length = 225

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 79/224 (35%), Positives = 120/224 (53%), Gaps = 6/224 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           A     L+ R+ Y F++  LL  AL+H S   +   + ERLEFLGD +LG+ IS+ LF  
Sbjct: 2   ASNAKQLQDRLQYQFSDPQLLTLALSHRSCGSN---NNERLEFLGDAVLGMAISSFLFQR 58

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F  A+EG+LS   + +V AE+ +++AR+LDL   + +     K       SI  D VE+L
Sbjct: 59  FPEAREGDLSRIRSQVVRAESLAEIARKLDLGPELLLGPGEMKSGGHRRDSILGDTVEAL 118

Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           + A++LD G+      V  ++      L      +DAKT LQEW  A+    PEY+V   
Sbjct: 119 LGAVFLDQGLVAVEACVQNWFGASLNTLTLDTPVKDAKTALQEWLQARGKPLPEYRVVKT 178

Query: 181 SGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
            G DH   FT+  +I  +   A+    S+R AEQ+ A +++K+ 
Sbjct: 179 EGEDHSRLFTMSCKIDAVDETAEATASSRRKAEQLVAEKLVKKL 222


>gi|262373078|ref|ZP_06066357.1| ribonuclease III [Acinetobacter junii SH205]
 gi|262313103|gb|EEY94188.1| ribonuclease III [Acinetobacter junii SH205]
          Length = 232

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 77/223 (34%), Positives = 122/223 (54%), Gaps = 5/223 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           + L  + L+ RIG+ F    LL+ ALTH S+SH +  +YERLEFLGD +LG++I+  L++
Sbjct: 8   NKLNDARLQNRIGHQFQQFDLLKLALTHRSVSHKH--NYERLEFLGDSLLGMIIANYLYH 65

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +    EG L+    +LV  E   ++A +L L+  + +S+   K       SI AD VE+
Sbjct: 66  TYPKENEGRLTRMRATLVRQEALGKIANDLQLSRSLILSTGELKSGGHHRESILADTVEA 125

Query: 122 LIAALYLDGG-IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +I A+YLD   + +  + V K+++     ++     +D K+ LQE+  A+    P Y+V 
Sbjct: 126 IIGAIYLDSNDLNLLQSIVLKWYEPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVV 185

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              G   +  F V   + G+    G   S+R AEQ AAAE+LK
Sbjct: 186 DIQGDAPNQHFKVECNVEGMPKFIGEGSSRRFAEQTAAAEILK 228


>gi|227112907|ref|ZP_03826563.1| ribonuclease III [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
 gi|253689440|ref|YP_003018630.1| ribonuclease III [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|259491904|sp|C6DC00|RNC_PECCP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|251756018|gb|ACT14094.1| ribonuclease III [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 226

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 70/213 (32%), Positives = 111/213 (52%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F    LL +ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPILINRLQRKLGYTFQQYELLLQALTHRSASSKH---NERLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPKVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGIFLDSDIQTIERLILNWYQTRLDEISPGDKQKDPKTRLQEFLQGRHLPLPTYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRA 210
              G  HD  FT+  ++SG + +  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGFSESVIGTGSSRRK 210


>gi|89053013|ref|YP_508464.1| ribonuclease III [Jannaschia sp. CCS1]
 gi|122499604|sp|Q28V23|RNC_JANSC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|88862562|gb|ABD53439.1| RNAse III [Jannaschia sp. CCS1]
          Length = 227

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 91/224 (40%), Positives = 128/224 (57%), Gaps = 1/224 (0%)

Query: 1   MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M   R  +    R+GY F + +LL +ALTHSS+S   +   +RLEFLGDR+LGL+++  +
Sbjct: 1   MKPARELTAFMDRLGYVFEDPALLARALTHSSLSSPTRGDNQRLEFLGDRVLGLVMAEAV 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
                 AKEG L+ RFN+LV  E C+ VAR++DL + +R+             ++  D +
Sbjct: 61  LAADTDAKEGTLAPRFNALVRKEACADVARQIDLGAAMRLGKSEMSAGGRRRMALLGDAM 120

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E++IAA+YLDGG   A   V + W +R     +  RDAKT LQEWA A+    P Y    
Sbjct: 121 EAVIAAVYLDGGFASARDLVLRLWSERVQSVEEDARDAKTALQEWAQARGMAPPTYTEVA 180

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           RSGPDH P F V V +S    A+    +KR AEQ AA ++L + 
Sbjct: 181 RSGPDHAPVFRVRVTLSSGENAEAQAKAKRQAEQQAAKDLLAQL 224


>gi|254418789|ref|ZP_05032513.1| ribonuclease III [Brevundimonas sp. BAL3]
 gi|196184966|gb|EDX79942.1| ribonuclease III [Brevundimonas sp. BAL3]
          Length = 236

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 92/235 (39%), Positives = 136/235 (57%), Gaps = 10/235 (4%)

Query: 1   MSALR---YSTLEKRIGYAFANRSLLEKALTHSSISH------SYQESYERLEFLGDRIL 51
           M+ LR    + L+ RIG+AF + +LLE+ALTH+S+              ERLEFLGDR+L
Sbjct: 1   MANLRAEAVAALQTRIGHAFRDAALLERALTHASVGEGAPVGVHGPRDNERLEFLGDRVL 60

Query: 52  GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111
           GLL++  L   + +A EG+LS   ++LV    C++V   L + + +R+S    K      
Sbjct: 61  GLLVAEKLSRDYPTANEGQLSSSLHALVDKTACARVGEALGVGAALRLSPGETKTGGRRK 120

Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFG 170
             + AD VE+++AA+YLDGG+E A  F DK W +  +    +   + K+ LQEWA AK  
Sbjct: 121 AGVIADAVEAILAAVYLDGGLEAARAFFDKAWAEEFSAPPSRTVTNPKSALQEWAQAKGR 180

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
             P Y+V  R+G DH P FT+ V + G+ P      S++ AE+ AA  +LKREG+
Sbjct: 181 PLPTYRVADRTGSDHAPTFTIEVSVEGVEPLTAQGRSRQEAEKAAATALLKREGV 235


>gi|188585989|ref|YP_001917534.1| Ribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|229564354|sp|B2A2N1|RNC_NATTJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|179350676|gb|ACB84946.1| Ribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 230

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 111/223 (49%), Gaps = 5/223 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFN 61
               L++++G    ++ LL +A+TH+S +H  ++     ERLEFLGD +L L IS  L+ 
Sbjct: 7   DIVELKEKLGIYVDDK-LLLQAVTHTSYAHEQKDVVDHNERLEFLGDAVLELAISETLYK 65

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +    EGEL+     LV   +  ++A +LDL  ++R+             S  AD VE+
Sbjct: 66  KYPELPEGELTKLRAELVCELSLVKIAEKLDLGKYLRLGKGEDSTGGRDRRSTLADTVEA 125

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFR 180
           LI A+YL    +     +   +K +       R  D KT +QE    ++G  P+Y++   
Sbjct: 126 LIGAVYLQTNYDQTKQLILDLFKDQLSHIDNQRIGDYKTMIQELVQDRYGDPPKYQIVKE 185

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           SGPDHD  F   V+I+     +G   SK+ AEQ AA    ++ 
Sbjct: 186 SGPDHDKSFVAEVQINNEVVGRGSGKSKKEAEQNAAHFAFQKL 228


>gi|323142424|ref|ZP_08077250.1| ribonuclease III [Phascolarctobacterium sp. YIT 12067]
 gi|322413117|gb|EFY04010.1| ribonuclease III [Phascolarctobacterium sp. YIT 12067]
          Length = 239

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 60/226 (26%), Positives = 108/226 (47%), Gaps = 7/226 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-----SYERLEFLGDRILGLLISTLL 59
           +  +  + +G    +  LL+ ALTH+S +H  ++       ER+EFLGD +L +++ST +
Sbjct: 8   QLQSFCQGLGIHMHDLELLDMALTHTSYAHEAKQYPKPHHNERIEFLGDSVLSVIVSTYM 67

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           + +F    EG+L+     LV   +  + A+++ L  ++++             SI AD  
Sbjct: 68  YKNFPDLAEGQLTKLRAYLVCEGSLYEYAKKIHLGDYLQLGKGEELSGGRERPSILADAF 127

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           ES++ A+YLD G EV   ++    +     +       D KT LQE+          Y +
Sbjct: 128 ESVLGAIYLDQGFEVVQAYLLGMMQSEIDFICRHGIFNDYKTRLQEYLQRDGDADIHYVL 187

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              +GP+H+  FT  V +      +G   +K+ +EQ AA + L + 
Sbjct: 188 LGSTGPEHNKVFTSQVMLGNTVIGEGSGRTKKDSEQHAAKQALAQL 233


>gi|85059765|ref|YP_455467.1| ribonuclease III [Sodalis glossinidius str. 'morsitans']
 gi|123519061|sp|Q2NS13|RNC_SODGM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|84780285|dbj|BAE75062.1| ribonuclease III [Sodalis glossinidius str. 'morsitans']
          Length = 226

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 74/213 (34%), Positives = 111/213 (52%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L+K++GY F    LL +ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPILTNRLQKKLGYTFQQHDLLLQALTHRSASSKH---NERLEFLGDSILSYVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  QRFPRVDEGDMSRMRATLVRGNTLAEMAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I      +  +++ R   +  G  ++D KT LQE+   +    P Y+V 
Sbjct: 118 ALIGGVFLDSDIRTVEKLILDWYRSRLDEISPGDKQKDPKTRLQEYLQGRHLPLPTYQVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRA 210
              G  HD  FT+  ++SGLA P  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLAQPVVGNGSSRRK 210


>gi|15595050|ref|NP_212839.1| ribonuclease III [Borrelia burgdorferi B31]
 gi|7531188|sp|O51648|RNC_BORBU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|2688625|gb|AAC67040.1| ribonuclease III (rnc) [Borrelia burgdorferi B31]
          Length = 246

 Score =  251 bits (643), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 115/224 (51%), Gaps = 5/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLFN 61
           + S   + +   F+N  LL  AL HSS S+       + ERLEFLGD +L L+I+  L+ 
Sbjct: 18  QLSKFLENLSIDFSNFDLLNTALCHSSYSNELDQKSSNNERLEFLGDSVLNLIITDHLYK 77

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGELS   + +VS ++ S +ARE++L S+I +      +       I AD +E+
Sbjct: 78  TYPNKSEGELSKARSYIVSEDSLSNIAREINLGSYILLGRGEESNDGRNKKGILADAIEA 137

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            + A+YLD G   A  FV   +    R + +    +D K+ LQE+   K+ ++P YK+  
Sbjct: 138 FVGAIYLDSGFSRATEFVVGLFDMYIRLMFNRGDFKDYKSLLQEYVQKKYKISPSYKLDK 197

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             GPDHD  F V + +     + G   SK+ AE  AA   LK  
Sbjct: 198 EIGPDHDKVFCVELYVGENFISNGKGKSKKEAEMRAAEVALKAM 241


>gi|253988786|ref|YP_003040142.1| ribonuclease III [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253780236|emb|CAQ83397.1| ribonuclease III [Photorhabdus asymbiotica]
          Length = 226

 Score =  251 bits (643), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 71/213 (33%), Positives = 112/213 (52%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F    LL +ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFDQHDLLIQALTHRSASSKH---NERLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGYRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     + ++++ R   +  G  ++D KT LQE+        P Y V 
Sbjct: 118 ALIGGIFLDSDIQTVERTILRWYETRLNEISPGDKQKDPKTRLQEYLQGHHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRA 210
              G  HD  FT+  ++SG+  P +G   S+R 
Sbjct: 178 MVRGEAHDQEFTIHCQVSGIEQPVKGTGSSRRK 210


>gi|71907657|ref|YP_285244.1| ribonuclease III [Dechloromonas aromatica RCB]
 gi|90101622|sp|Q47EF7|RNC_DECAR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|71847278|gb|AAZ46774.1| RNAse III [Dechloromonas aromatica RCB]
          Length = 222

 Score =  251 bits (643), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 79/216 (36%), Positives = 119/216 (55%), Gaps = 6/216 (2%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
           K++ + F++++L   ALTH S       + ERLEFLGD +L  +I+  L++ F    EG+
Sbjct: 8   KKLNHCFSDQALFRTALTHRSFG---TPNNERLEFLGDGVLDFVIAASLYHRFPDLPEGD 64

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           LS    +LV  ET  ++A EL++ +F+R+     K   +   SI AD +E+L  A+YLD 
Sbjct: 65  LSRLRANLVRQETLHRLALELNIGAFLRLGEGELKSGGAQRPSILADALEALFGAIYLDA 124

Query: 131 GIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           G E +   ++K +      LK G+F++DAKT LQEW   +    P Y +   +G  H+ R
Sbjct: 125 GFEASRAVIEKLFAPLLDDLKPGQFQKDAKTRLQEWLQGRKKALPRYHLLEATGAAHEQR 184

Query: 189 FTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223
           F +  EI   A    G   S+R AEQVAA + LK  
Sbjct: 185 FEIACEIESPALRTVGHGSSRRIAEQVAAEKALKEL 220


>gi|57234229|ref|YP_181741.1| ribonuclease III [Dehalococcoides ethenogenes 195]
 gi|90101623|sp|Q3Z7Q8|RNC_DEHE1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|57224677|gb|AAW39734.1| ribonuclease III [Dehalococcoides ethenogenes 195]
          Length = 237

 Score =  251 bits (643), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 73/225 (32%), Positives = 117/225 (52%), Gaps = 6/225 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59
           L  + LEK +G  F N SLLE+AL H+S  +        S ER+EFLGD +LG++ +  L
Sbjct: 2   LDLTELEKSLGVKFENLSLLEQALIHTSWVNENPNHLSGSNERMEFLGDAVLGVIFADRL 61

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           ++ F   +EG+L+   + LV  E+  +VA  ++L  ++ +          F  +  A   
Sbjct: 62  YHDFPDIQEGDLTRFRSLLVRRESLVRVALGINLGKYLYLGRGEDASKGRFKPANLAGAF 121

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177
           E+++AA+YLD GI+     + + +K    +        D K+ LQE   A+F +TP Y++
Sbjct: 122 EAVLAAIYLDKGIDATREVIFRLFKTEMERVQTLSSNIDYKSRLQELVQAQFQLTPRYRI 181

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              SGP+H+  F   V       A+G   SK+ AE  AA E L++
Sbjct: 182 IDFSGPEHNHLFIAEVYTEDKVLAEGSGRSKKEAETSAAKEALQQ 226


>gi|83858196|ref|ZP_00951718.1| ribonuclease III [Oceanicaulis alexandrii HTCC2633]
 gi|83853019|gb|EAP90871.1| ribonuclease III [Oceanicaulis alexandrii HTCC2633]
          Length = 228

 Score =  251 bits (643), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 94/221 (42%), Positives = 132/221 (59%), Gaps = 2/221 (0%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNH 62
           R    E RI Y F +R LLE+ALTH+S         S ERLEFLGDR+LGL+ S  L+  
Sbjct: 4   RIKDFEARINYRFKDRELLERALTHASHGDGRSRAASNERLEFLGDRVLGLMASQRLYET 63

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F + +EG L+ R N++V+   C++ AR  DL   +R+S+   +       SI AD  E++
Sbjct: 64  FPNLEEGGLAQRLNAVVNKSACARAARRCDLGEGLRLSAAEERLGGREKESIIADACEAV 123

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           I ALYLDGG++ A  F   +W     +  +  +DAK++LQEWA  K    P Y+   R G
Sbjct: 124 IGALYLDGGLDAAWAFFTTFWADEIDQLTRRPKDAKSQLQEWAAQKGYGVPVYETVARKG 183

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           PDH P F + V + G+APA+G   SK+ A++ AA+E+LKRE
Sbjct: 184 PDHRPVFEIEVRLDGVAPARGEGGSKQDAQRAAASEMLKRE 224


>gi|332685822|ref|YP_004455596.1| ribonuclease III [Melissococcus plutonius ATCC 35311]
 gi|332369831|dbj|BAK20787.1| ribonuclease III [Melissococcus plutonius ATCC 35311]
          Length = 230

 Score =  251 bits (643), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 109/226 (48%), Gaps = 5/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M       L++R G  F + +LLE+A THSS  + ++       ER+EFLGD +L L+IS
Sbjct: 1   MDDRLTKELKERYGIVFHDVNLLEQAFTHSSYVNEHRYLKLSDNERIEFLGDAVLELIIS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  + +  EG+L+    ++V  ++ ++ A+E     +I + +          +++  
Sbjct: 61  QYLYQKYQNLPEGKLTKMRAAIVREDSLAKFAKECQFDQYILLGNGEENSGGRERSALLC 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + ALYLD GIE    F+ +    +  +       D KT LQE    K  V  +Y
Sbjct: 121 DLFEAFLGALYLDQGIETVKYFISEIIFPKIEEGNFSHEVDHKTHLQEVLQHKGDVNIDY 180

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           ++    GP HD  F   +        +G   SK+ AEQ AA   LK
Sbjct: 181 RLVDEKGPAHDRIFYTEIYADEKLIGRGHGRSKKLAEQDAAERALK 226


>gi|330446941|ref|ZP_08310592.1| ribonuclease III [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328491132|dbj|GAA05089.1| ribonuclease III [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 224

 Score =  251 bits (643), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 110/207 (53%), Gaps = 6/207 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L++++GY F N  L+  ALTH S + ++    ERLEFLGD IL  +++  L++ F S 
Sbjct: 6   NRLQRKLGYQFNNSELMTLALTHRSANGNH---NERLEFLGDSILSFVVADDLYHRFPSV 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG++S    +LV  +T +++ RE +L   + +     K       SI AD VE++I A+
Sbjct: 63  DEGDMSRMRATLVRGKTLAELGREFELGDHLLLGPGELKSGGFRRDSILADCVEAIIGAI 122

Query: 127 YLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD  IE     V  ++K R   ++ G  ++D KT LQE    +    P Y V    G  
Sbjct: 123 YLDSDIEKVREIVLTWYKTRLETIEPGINQKDPKTRLQECLQGRRLPLPAYTVIKVQGEA 182

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRA 210
           H+  FTV  +++GL  P  G   S+R 
Sbjct: 183 HNQEFTVQCDVTGLDKPVIGKGGSRRK 209


>gi|195941524|ref|ZP_03086906.1| ribonuclease III (rnc) [Borrelia burgdorferi 80a]
 gi|216264636|ref|ZP_03436628.1| ribonuclease III [Borrelia burgdorferi 156a]
 gi|218249229|ref|YP_002375205.1| ribonuclease III [Borrelia burgdorferi ZS7]
 gi|221217995|ref|ZP_03589462.1| ribonuclease III [Borrelia burgdorferi 72a]
 gi|223889463|ref|ZP_03624049.1| ribonuclease III [Borrelia burgdorferi 64b]
 gi|224532354|ref|ZP_03672984.1| ribonuclease III [Borrelia burgdorferi WI91-23]
 gi|224533390|ref|ZP_03673984.1| ribonuclease III [Borrelia burgdorferi CA-11.2a]
 gi|225548949|ref|ZP_03769926.1| ribonuclease III [Borrelia burgdorferi 94a]
 gi|225549922|ref|ZP_03770883.1| ribonuclease III [Borrelia burgdorferi 118a]
 gi|226320458|ref|ZP_03796024.1| ribonuclease III [Borrelia burgdorferi 29805]
 gi|226321403|ref|ZP_03796930.1| ribonuclease III [Borrelia burgdorferi Bol26]
 gi|215981109|gb|EEC21916.1| ribonuclease III [Borrelia burgdorferi 156a]
 gi|218164417|gb|ACK74478.1| ribonuclease III [Borrelia burgdorferi ZS7]
 gi|221192301|gb|EEE18521.1| ribonuclease III [Borrelia burgdorferi 72a]
 gi|223885149|gb|EEF56253.1| ribonuclease III [Borrelia burgdorferi 64b]
 gi|224512661|gb|EEF83032.1| ribonuclease III [Borrelia burgdorferi WI91-23]
 gi|224513555|gb|EEF83912.1| ribonuclease III [Borrelia burgdorferi CA-11.2a]
 gi|225369381|gb|EEG98833.1| ribonuclease III [Borrelia burgdorferi 118a]
 gi|225370552|gb|EEG99988.1| ribonuclease III [Borrelia burgdorferi 94a]
 gi|226233199|gb|EEH31951.1| ribonuclease III [Borrelia burgdorferi Bol26]
 gi|226234100|gb|EEH32815.1| ribonuclease III [Borrelia burgdorferi 29805]
 gi|312147960|gb|ADQ30619.1| ribonuclease III [Borrelia burgdorferi JD1]
 gi|312148997|gb|ADQ29068.1| ribonuclease III [Borrelia burgdorferi N40]
          Length = 245

 Score =  251 bits (643), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 115/224 (51%), Gaps = 5/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLFN 61
           + S   + +   F+N  LL  AL HSS S+       + ERLEFLGD +L L+I+  L+ 
Sbjct: 17  QLSKFLENLSIDFSNFDLLNTALCHSSYSNELDQKSSNNERLEFLGDSVLNLIITDHLYK 76

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGELS   + +VS ++ S +ARE++L S+I +      +       I AD +E+
Sbjct: 77  TYPNKSEGELSKARSYIVSEDSLSNIAREINLGSYILLGRGEESNDGRNKKGILADAIEA 136

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            + A+YLD G   A  FV   +    R + +    +D K+ LQE+   K+ ++P YK+  
Sbjct: 137 FVGAIYLDSGFSRATEFVVGLFDMYIRLMFNRGDFKDYKSLLQEYVQKKYKISPSYKLDK 196

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             GPDHD  F V + +     + G   SK+ AE  AA   LK  
Sbjct: 197 EIGPDHDKVFCVELYVGENFISNGKGKSKKEAEMRAAEVALKAM 240


>gi|332976630|gb|EGK13471.1| ribonuclease III [Desmospora sp. 8437]
          Length = 231

 Score =  251 bits (643), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 112/225 (49%), Gaps = 6/225 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHS-----YQESYERLEFLGDRILGLLISTL 58
           +  + L + IG +  N+ L  +A TH+S +H      +Q   ERLEFLGD +L L +S  
Sbjct: 1   MNLAELGQTIGLSLQNKELFLQAFTHTSFAHERKGERHQPDNERLEFLGDAVLELTVSEH 60

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L++ F   KEG+L+     +V   + +  AR+L+    +R+             ++ ADV
Sbjct: 61  LYHRFPHLKEGDLTRMRARIVCEPSLASFARDLNFGKHVRLGKGEELTGGRNRPALLADV 120

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKV 177
            E+ I ALYL+ G++    F+++    R          DAK+ LQE    +   +  Y++
Sbjct: 121 FEAFIGALYLEKGLDGVIDFMNRVILPRIDDQWLAQGSDAKSRLQEAVQQEHLGSLVYQI 180

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
               GP HD +F   V +SG     G   SK+ AEQ AAAE L+R
Sbjct: 181 VDVQGPAHDRQFVAEVWLSGEKLGTGAGRSKKEAEQQAAAEGLQR 225


>gi|300724126|ref|YP_003713443.1| RNase III, ds RNA [Xenorhabdus nematophila ATCC 19061]
 gi|297630660|emb|CBJ91325.1| RNase III, ds RNA [Xenorhabdus nematophila ATCC 19061]
          Length = 226

 Score =  251 bits (643), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 72/213 (33%), Positives = 113/213 (53%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+A+  + L+ ++GY F    LL +ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNAILTNRLQHKLGYTFTQHDLLLQALTHRSASSKH---NERLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD +E
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGHRRESILADSIE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI A++LD  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGAIFLDSDIQTIEKIILNWYETRLNEISPGDKQKDPKTRLQEYLQGRHLPLPTYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRA 210
              G  HD  FT+  ++SG   P +G+  S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGFEQPVRGVGSSRRK 210


>gi|148265180|ref|YP_001231886.1| ribonuclease III [Geobacter uraniireducens Rf4]
 gi|146398680|gb|ABQ27313.1| RNAse III [Geobacter uraniireducens Rf4]
          Length = 240

 Score =  251 bits (643), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 82/224 (36%), Positives = 118/224 (52%), Gaps = 6/224 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLFN 61
            + LE  I Y FA+RSLL +ALTH S  +       +  +RLEF GD ++  L+S +L  
Sbjct: 9   LAGLESAINYHFADRSLLTEALTHRSFVNESGGKWTKDNQRLEFFGDAVIDFLLSRMLLE 68

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F  ++EG L+    SLV   + + +A E+ L +F+++     +       S+ AD  E+
Sbjct: 69  RFPDSREGALTKIRASLVDEGSLASLAEEIGLGAFLKLGRGEERSGGRRKRSLLADAYEA 128

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTF 179
           L+AA+YLDGGIE     V+ ++ +           RD KTE QE AHA  G  P Y +  
Sbjct: 129 LMAAVYLDGGIEPVQRLVEAHFARLMAGREVLSAGRDYKTEFQELAHALRGSMPRYVLRG 188

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            SGPDH+  FTV + I      +G   SK+ AEQ AA E + R 
Sbjct: 189 ISGPDHERSFTVALFIGDERMGEGAGRSKKEAEQAAAREGIARL 232


>gi|262196731|ref|YP_003267940.1| ribonuclease III [Haliangium ochraceum DSM 14365]
 gi|262080078|gb|ACY16047.1| ribonuclease III [Haliangium ochraceum DSM 14365]
          Length = 282

 Score =  251 bits (643), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 80/216 (37%), Positives = 116/216 (53%), Gaps = 4/216 (1%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLL 59
           A+  S LE  +G+ F  R+LLE A+TH S ++         ERLEFLGD +L L +  +L
Sbjct: 42  AIDLSGLEDILGHRFRKRALLEAAVTHRSFANEQAVPCTDNERLEFLGDAVLDLAVGHML 101

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
            +      EG LSV    +VS +  S++A  L L +++R+    R+       SI AD +
Sbjct: 102 MDVHPDLSEGRLSVTRAQIVSEKGLSEIAYGLGLGTYLRLGKGERRSGGQNKASILADSL 161

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVT 178
           E++IAA+YLDGG + A   V + + +   +       D KT LQE A A+   TP Y+V 
Sbjct: 162 EAVIAAVYLDGGFDAAWKLVARLFARTLEEVEISGFYDHKTRLQELAQARLKSTPAYRVV 221

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
             +GPDH   F VV EI G    + +  SK+ AEQ+
Sbjct: 222 DETGPDHAKLFEVVAEIDGREWGRAIGSSKKRAEQM 257


>gi|227824522|ref|ZP_03989354.1| ribonuclease [Acidaminococcus sp. D21]
 gi|226905021|gb|EEH90939.1| ribonuclease [Acidaminococcus sp. D21]
          Length = 238

 Score =  251 bits (643), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 74/238 (31%), Positives = 112/238 (47%), Gaps = 14/238 (5%)

Query: 1   MSALRYSTLEK---RIGYAFANRSLLEKALTHSSISHSYQES-----YERLEFLGDRILG 52
           M   R   LE    R+G    + SL++ ALTHSS ++  +E       +RLEFLGD +L 
Sbjct: 1   MRKERKEALESFLVRLGVTMQDLSLMDTALTHSSYAYECKEKVVPEFNQRLEFLGDSVLS 60

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
           L++ST L+  +    EG LS     LV  ET +++A++L +  ++ +          +  
Sbjct: 61  LVVSTHLYLAYPEMDEGALSKFRAFLVCEETLAELAQDLAIGDYLLLGRGECHMGGRYNP 120

Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFG 170
           SI AD  ES++ A YLD G E     + +    +   L +    RD KT  QE   A+  
Sbjct: 121 SILADAFESVMGAYYLDAGYEKVRDLLTRVLIDKIPELTADGIDRDYKTRFQELIQAQGQ 180

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL----KREG 224
               Y+     GP H+  F + V +       G   +K+ AEQ AA E L    K++G
Sbjct: 181 TDIHYEEAGFDGPPHNRTFFMKVIVGEKTYGTGSGRTKKLAEQRAAREALRLVKKKQG 238


>gi|118594601|ref|ZP_01551948.1| ribonuclease III [Methylophilales bacterium HTCC2181]
 gi|118440379|gb|EAV47006.1| ribonuclease III [Methylophilales bacterium HTCC2181]
          Length = 243

 Score =  251 bits (643), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 75/227 (33%), Positives = 115/227 (50%), Gaps = 6/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M++ +   +E  +G+ F +++L++ ALTH S      E+ ERLEFLGD IL  +++ LL+
Sbjct: 15  MNSNQIEQIESILGHTFKDKALIKIALTHRSA---KGENNERLEFLGDGILNFIVAELLY 71

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG+LS   + LV   T   +A+ L +  F+ +     K       SI AD +E
Sbjct: 72  VRFQQLSEGDLSRLRSQLVKESTLCDIAKNLTIGDFLLLGEGELKSAGWRRPSILADSLE 131

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++IAA+YLD GI    +F+++ + +    +   K  +D K+ LQE+   K    PEY V 
Sbjct: 132 AIIAAIYLDDGIGKVKSFIERRFNEHIITIDPNKIHKDDKSLLQEFLQGKKIAIPEYTVI 191

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKREG 224
              G  H   F V   I  L   + G   S++ AEQ AA   L   G
Sbjct: 192 EIEGEPHAQVFEVKCRIPKLNIEKIGKGPSRKIAEQNAANLALIYLG 238


>gi|268593250|ref|ZP_06127471.1| ribonuclease III [Providencia rettgeri DSM 1131]
 gi|291311145|gb|EFE51598.1| ribonuclease III [Providencia rettgeri DSM 1131]
          Length = 226

 Score =  251 bits (643), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 71/213 (33%), Positives = 111/213 (52%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+      L++++GY F    LL +ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPSLIERLQRKLGYQFKQNELLIQALTHRSASSKH---NERLEFLGDSILSFVIANDLY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPKVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  +++ R ++   G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGIFLDSDIQTIERIILDWYQSRLVEISPGDKQKDPKTRLQEYLQGRHLPLPNYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SG+  P  G+  S+R 
Sbjct: 178 QVKGEAHDQEFTIHCQVSGIDQPINGVGSSRRK 210


>gi|257126255|ref|YP_003164369.1| ribonuclease III [Leptotrichia buccalis C-1013-b]
 gi|257050194|gb|ACV39378.1| ribonuclease III [Leptotrichia buccalis C-1013-b]
          Length = 232

 Score =  251 bits (643), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 117/230 (50%), Gaps = 7/230 (3%)

Query: 1   MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55
           M+A + S  L K+IGY F N+  LE+ALTH S S+  ++    + E+LEFLGD IL L+ 
Sbjct: 1   MTARKNSKDLIKKIGYEFKNKKYLEEALTHRSYSNEAEKTRRFNNEKLEFLGDAILNLIT 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           +  +++ +    EGEL+   + ++S    S +A ++ L  ++ +S+           SI 
Sbjct: 61  TEYIYDLYGKKTEGELAKLKSQIISEPVFSTIASDIKLGEYLYLSNGEIMSGGRNRRSIL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTP 173
            D  E+LI A++ D     A     K+   +  K  +     D KT LQE+   K+   P
Sbjct: 121 GDAFEALIGAIFKDSDYYTAKNVALKFLLGKINKLEEIEGTGDYKTILQEFVQGKYKKMP 180

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           EYK+    GPDH+  F + V  +      G   SK+ AE+ AA E L++ 
Sbjct: 181 EYKLLRTKGPDHNKVFEICVRWNDKIYGIGTGKSKKEAEKHAAKEALEKL 230


>gi|116327694|ref|YP_797414.1| ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|122284510|sp|Q053L4|RNC_LEPBL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|116120438|gb|ABJ78481.1| Ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
          Length = 247

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 79/223 (35%), Positives = 113/223 (50%), Gaps = 5/223 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFN 61
            +  L K+IG  F+       A  HSS  +   E     ERLEFLGD +LGL+ +  LF 
Sbjct: 20  SFKKLSKKIGIKFSKIEYYNTAFIHSSYKNENPEILEDNERLEFLGDSVLGLVAARSLFQ 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +  A EGELS   + +VS    + +A +L+L  ++ +    +         I A++ ES
Sbjct: 80  KYPKASEGELSRIKSKIVSTPILNSIAEKLNLGEYLLLGKGEKNSQGKGRRKIAANLFES 139

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           L+ A+YLD G EVA  F+ ++  + A      +  RD KT+LQE++   F   P Y++  
Sbjct: 140 LVGAIYLDRGFEVAEKFIVQHLLEFAENPDMEESVRDYKTQLQEYSQKHFKTLPVYRMKG 199

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            SGPDH   F V V I     A G   SK+ AEQ AA E+  R
Sbjct: 200 ESGPDHSKMFQVSVRIRDQWEASGYGASKKIAEQNAAKELYIR 242


>gi|183599777|ref|ZP_02961270.1| hypothetical protein PROSTU_03285 [Providencia stuartii ATCC 25827]
 gi|188022041|gb|EDU60081.1| hypothetical protein PROSTU_03285 [Providencia stuartii ATCC 25827]
          Length = 226

 Score =  251 bits (642), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 70/213 (32%), Positives = 110/213 (51%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+      L++++GY F    LL +ALTH S +  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPSLLEQLQRKLGYKFNQHDLLIQALTHRSANSKH---NERLEFLGDSILSFVIANDLY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPKVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGIFLDSDIQTIEKIILDWYQTRLNEISPGDKQKDPKTRLQEYLQGRHLPLPNYIVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRA 210
              G  HD  FT+  ++SG+  P  G+  S+R 
Sbjct: 178 QVKGEAHDQEFTIHCQVSGIEQPINGVGSSRRK 210


>gi|78223520|ref|YP_385267.1| ribonuclease III:double-stranded RNA binding [Geobacter
           metallireducens GS-15]
 gi|90101627|sp|Q39T82|RNC_GEOMG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|78194775|gb|ABB32542.1| RNAse III [Geobacter metallireducens GS-15]
          Length = 246

 Score =  251 bits (642), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 84/223 (37%), Positives = 118/223 (52%), Gaps = 7/223 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ-----ESYERLEFLGDRILGLLISTLLFN 61
           + LE  IGY F NR  L +ALTH S  +  +        ERLEFLGD +LGLL+  +LF 
Sbjct: 17  TELEAGIGYRFVNRQFLAEALTHRSWVNERRGEEGIRDNERLEFLGDAVLGLLVGKMLFA 76

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F  ++EG L+    SLV  ET + +A    L   + +     +       S+ A+  E+
Sbjct: 77  RFPQSREGVLARMKASLVGEETLAALASARGLGRHLLLGRGEERSGGRERRSLLANTYEA 136

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           L+AA+YLDGG+      V++ +      + SG   RD KTE QE    +FG  P Y++  
Sbjct: 137 LLAAVYLDGGLGPVERIVEQDFSPLLAGIASGATGRDFKTEFQEMVQTRFGTAPTYELIA 196

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             GP HD RFTV+  ++G    +G   SK+ AEQ AA +VL R
Sbjct: 197 TDGPPHDRRFTVIAMVAGKRMGEGAGRSKKEAEQAAARQVLAR 239


>gi|89075088|ref|ZP_01161529.1| ribonuclease III [Photobacterium sp. SKA34]
 gi|89049175|gb|EAR54740.1| ribonuclease III [Photobacterium sp. SKA34]
          Length = 239

 Score =  251 bits (642), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 111/207 (53%), Gaps = 6/207 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L++++GY F N  L+  ALTH S + ++    ERLEFLGD IL  +++  L++ F S 
Sbjct: 21  NRLQRKLGYQFNNCELMTLALTHRSANGTH---NERLEFLGDSILSFVVADDLYHRFPSV 77

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG++S    +LV  +T +++ RE +L   + +     K       SI AD VE++I A+
Sbjct: 78  DEGDMSRMRATLVRGKTLAELGREFELGDHLLLGPGELKSGGFRRDSILADCVEAIIGAI 137

Query: 127 YLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD  +E     V  ++K R   ++ G  ++D KT LQE    +    P Y VT   G  
Sbjct: 138 YLDSDVEQVRRIVLAWYKTRLDTIEPGINQKDPKTRLQECLQGRRLPLPAYTVTKVQGEA 197

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRA 210
           H+  FTV  +++GL  P  G   S+R 
Sbjct: 198 HNQEFTVQCDVTGLDKPVIGKGGSRRK 224


>gi|147669550|ref|YP_001214368.1| ribonuclease III [Dehalococcoides sp. BAV1]
 gi|289432809|ref|YP_003462682.1| ribonuclease III [Dehalococcoides sp. GT]
 gi|146270498|gb|ABQ17490.1| RNAse III [Dehalococcoides sp. BAV1]
 gi|288946529|gb|ADC74226.1| ribonuclease III [Dehalococcoides sp. GT]
          Length = 248

 Score =  251 bits (642), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 115/225 (51%), Gaps = 6/225 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59
           L  + LE  +G  F   SLLE+AL H+S  +        S ER+EFLGD +LG++ +  L
Sbjct: 13  LDLTELENSLGVKFEQPSLLEQALIHTSWVNENPNHSSGSNERMEFLGDAVLGVIFADRL 72

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           ++ F   +EG+L+   + LV  E+  +VA  ++L  ++ +          F  +  A   
Sbjct: 73  YHDFPDIQEGDLTRFRSLLVRRESLVRVALGINLGKYLYLGRGEDVSKGRFKPANLAGAF 132

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177
           E+++AA+Y+D G++V    + + +K    +        D K+ LQE   A+  +TP Y++
Sbjct: 133 EAVLAAIYIDKGMDVTREVIFRLFKTEMERVQTLSSNIDYKSRLQELIQAQLQLTPRYRI 192

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           T  SGP+H+  F   V       A+G   SK+ AE  AA   L++
Sbjct: 193 TNFSGPEHNRLFIAEVYAEDRVFAEGSGRSKKEAETNAAKVALQQ 237


>gi|78778218|ref|YP_394533.1| ribonuclease III [Sulfurimonas denitrificans DSM 1251]
 gi|78498758|gb|ABB45298.1| RNAse III [Sulfurimonas denitrificans DSM 1251]
          Length = 226

 Score =  251 bits (642), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 81/225 (36%), Positives = 124/225 (55%), Gaps = 9/225 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           MS      LE+ +GY F N+ L+ +ALTH S  H      ERLEFLGD +L L++   LF
Sbjct: 1   MSK-NIEALEEILGYKFKNQKLIIEALTHKS--HKQPYDNERLEFLGDAVLDLIVGEYLF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F S+ EG LS    +LV+ +   ++AR ++L  +I +S+    +      S+ ++  E
Sbjct: 58  FKFASSDEGTLSKIRAALVNEDGFERLARSINLGEYIYLSNAEENNGGREKASLLSNAFE 117

Query: 121 SLIAALYLDGGIEVAGT----FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           ++I A+YL+ G+++        +++ +++ +L S    RD KT LQE   A+FG TPEY 
Sbjct: 118 AMIGAIYLESGLDIVKPIAIGIIERNYQEISLDS--LFRDYKTTLQELTQARFGETPEYI 175

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           V    GPDH   F V V I G   A+ +  SK+ A+Q AA   +K
Sbjct: 176 VVASRGPDHKKEFEVAVIIEGKEYARAIGKSKKIAQQEAAEMAVK 220


>gi|163814044|ref|ZP_02205436.1| hypothetical protein COPEUT_00197 [Coprococcus eutactus ATCC 27759]
 gi|158450493|gb|EDP27488.1| hypothetical protein COPEUT_00197 [Coprococcus eutactus ATCC 27759]
          Length = 232

 Score =  251 bits (642), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 79/227 (34%), Positives = 120/227 (52%), Gaps = 7/227 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M+   Y  LEK+IGY F + +LL  ALTH+S ++  +    +SYERLEFLGD IL  ++S
Sbjct: 4   MNR-NYDELEKKIGYQFKDINLLITALTHTSFANELKVNKTDSYERLEFLGDAILEYIVS 62

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF      +EG L+    SLV   T SQ++  L    ++R+S            SI  
Sbjct: 63  EYLFLKKKEYEEGRLTKLRASLVCEFTLSQISESLGYGDYVRLSKGEELTGGRKRKSILC 122

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D+ ES++ A+YLDGGIE A  FV ++     +++     DAK+ LQE+          Y+
Sbjct: 123 DLFESVLGAMYLDGGIEPAKEFVHRFLLD-DVETKSLFYDAKSTLQEFCQKHGRQL-SYE 180

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +    GP+H   F     I+G   A+G   +++ +EQ+AA + L + 
Sbjct: 181 LIEERGPEHSKIFVSDAVINGKVTARGEGPNRKTSEQMAAYKTLLQL 227


>gi|37527216|ref|NP_930560.1| ribonuclease III [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|81418780|sp|Q7N1X5|RNC_PHOLL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|36786650|emb|CAE15714.1| ribonuclease III (RNase III) [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 226

 Score =  251 bits (642), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 72/213 (33%), Positives = 112/213 (52%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F    LL +ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFDQYDLLIQALTHRSASSKH---NERLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGYRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI A++LD  I+     +  +++ R   +  G  ++D KT LQE+        P Y V 
Sbjct: 118 ALIGAIFLDSDIQSIERIILSWYETRLNEISPGDKQKDPKTRLQEYLQGHHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRA 210
              G  HD  FT+  ++SG+  P +G   S+R 
Sbjct: 178 MVRGEAHDQEFTIHCQVSGIEQPVKGTGSSRRK 210


>gi|110633304|ref|YP_673512.1| ribonuclease III [Mesorhizobium sp. BNC1]
 gi|110284288|gb|ABG62347.1| RNAse III [Chelativorans sp. BNC1]
          Length = 238

 Score =  251 bits (642), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 106/221 (47%), Positives = 143/221 (64%), Gaps = 1/221 (0%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             + +RIG +F +  LLE+ALTHSS +      Y+RLEFLGDR+LGL ++ +L+  +  A
Sbjct: 13  EAVNERIGLSFRDAELLERALTHSS-ARGKGGDYQRLEFLGDRVLGLAVAEMLYEAYPDA 71

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS+R NSLV+AET +++  EL L + IR  SDL+        +++ADV+E+LIA +
Sbjct: 72  SEGELSLRLNSLVNAETLAEITEELGLDTLIRTGSDLKALAMRKQVNLRADVLEALIAVI 131

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           YL  G++ A  F+  +W +R+   G  R DAKT LQEWAH     TP+Y +  R GPDHD
Sbjct: 132 YLQDGLDGARQFIRTHWTERSTAEGAARADAKTALQEWAHRVSSATPDYVIESREGPDHD 191

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           P FT VV I+G    +G   SKR AEQ AA EVL RE +WT
Sbjct: 192 PVFTAVVRIAGFQEGRGRGRSKREAEQAAATEVLIREAVWT 232


>gi|294139709|ref|YP_003555687.1| ribonuclease III [Shewanella violacea DSS12]
 gi|293326178|dbj|BAJ00909.1| ribonuclease III [Shewanella violacea DSS12]
          Length = 225

 Score =  251 bits (642), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 117/224 (52%), Gaps = 6/224 (2%)

Query: 1   MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  ++    L + +GY F  ++ L++ALTH S S  +    ERLEFLGD IL ++IS  L
Sbjct: 1   MEPIKNIPRLCRTLGYQFTQQAHLDQALTHRSASSKH---NERLEFLGDSILSIIISDAL 57

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           ++ F    EG+LS    +LV  +  +++  E  L  ++++     K       SI AD V
Sbjct: 58  YHQFPKVTEGDLSRMRATLVCGKMLAEIGFEFKLGDYLKLGPGELKSGGFRRESIIADGV 117

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           E++I A+YLD  +E     V  +++ R A+     ++D KT LQE         P YKVT
Sbjct: 118 EAIIGAIYLDADLETCRARVLSWYESRLAIIEPINQKDPKTLLQELLQGFKKPLPVYKVT 177

Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLK 221
              G  H   FTV   +     P  G+  S+R AEQ+AAA+VL+
Sbjct: 178 DIKGEAHAQTFTVECSVEELKKPLVGVASSRRKAEQIAAAQVLE 221


>gi|303256999|ref|ZP_07343013.1| ribonuclease III [Burkholderiales bacterium 1_1_47]
 gi|330999188|ref|ZP_08322907.1| ribonuclease III [Parasutterella excrementihominis YIT 11859]
 gi|302860490|gb|EFL83567.1| ribonuclease III [Burkholderiales bacterium 1_1_47]
 gi|329575388|gb|EGG56932.1| ribonuclease III [Parasutterella excrementihominis YIT 11859]
          Length = 228

 Score =  251 bits (642), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 78/225 (34%), Positives = 114/225 (50%), Gaps = 6/225 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           L  + LE+RIGY F N+ LL +A+TH S S  +    ERLEFLGD +L  +I   LF   
Sbjct: 2   LPLTVLEERIGYTFKNKELLRRAMTHRSFSAEH---NERLEFLGDSVLNCVIGNALFLKD 58

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG LS   ++LV     +++A  + ++ F++V +  +    +   S  AD VE++ 
Sbjct: 59  KHFDEGSLSRVRSNLVRQSALAEIAERIGISDFLKVGAGEKHTGGNHRPSTIADAVEAIF 118

Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++ DGG E A T + + ++     L      +DAKT LQE         P Y +    
Sbjct: 119 GAVFTDGGFEEAQTVIIRLYEPMLSQLTPTTLGKDAKTNLQEVLQRMHFGLPLYDIVEIR 178

Query: 182 GPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREGI 225
           G  HD  F V V+I  L  +  G+  S+R AEQ AA + L  E I
Sbjct: 179 GAPHDQEFEVRVDIPDLGISLTGVGKSRRQAEQDAAQKALDSEAI 223


>gi|163760595|ref|ZP_02167676.1| putative ribonuclease III [Hoeflea phototrophica DFL-43]
 gi|162282210|gb|EDQ32500.1| putative ribonuclease III [Hoeflea phototrophica DFL-43]
          Length = 244

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 131/217 (60%), Positives = 165/217 (76%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           E+RIG+ F++   LE+ALTH+S   +   +YERLEFLGDR+LGL ++ LLF HF +A EG
Sbjct: 16  EERIGHQFSSPVRLERALTHASTRTNTNGNYERLEFLGDRVLGLCVAELLFGHFGNATEG 75

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           E+SVR N LVSA+TCS+VA +L L  FIR  +D++K     M +++ADVVESLIAA+YLD
Sbjct: 76  EMSVRLNQLVSAQTCSEVADDLGLHEFIRTGADVKKLTGKRMANVRADVVESLIAAIYLD 135

Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
            G+E A +F+ K+WK RAL     RRDAKTELQEWAHA+FGVTP Y+VT R+GPDH+P F
Sbjct: 136 AGLEAARSFIHKHWKARALAEDGARRDAKTELQEWAHARFGVTPVYRVTDRAGPDHEPVF 195

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           TV VEI+G  PA G   SKRAAEQ AA  VL+REG+W
Sbjct: 196 TVTVEINGAKPASGESSSKRAAEQAAATAVLEREGVW 232


>gi|49081844|gb|AAT50322.1| PA0770 [synthetic construct]
          Length = 230

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 79/216 (36%), Positives = 113/216 (52%), Gaps = 7/216 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           MS      LE+++GY F +R L+  ALTH S +     + ERLEFLGD IL  +I   LF
Sbjct: 1   MSN-SLDRLERKLGYTFKDRDLMVLALTHRSYA---GRNNERLEFLGDAILNFVIGEALF 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           +HF  A+EG+LS     LV  ET + +AR  ++  ++R+ S   K       SI AD +E
Sbjct: 57  HHFPQAREGQLSRLRARLVKGETLALLARGFEVGDYLRLGSGELKSGGFRRESILADAME 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI A+YLD G++ A   +  +     R L      +D KT LQE+  ++    P Y+V 
Sbjct: 117 ALIGAIYLDTGMDSARERIIAWLGPQLRELTPVDTNKDPKTRLQEFLQSRGCDLPRYEVV 176

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQ 213
              G  H   F V  E++ L+    G   S+R AEQ
Sbjct: 177 DIQGEPHCRTFFVDCEVALLSDKTHGHGGSRRIAEQ 212


>gi|254283270|ref|ZP_04958238.1| ribonuclease III [gamma proteobacterium NOR51-B]
 gi|219679473|gb|EED35822.1| ribonuclease III [gamma proteobacterium NOR51-B]
          Length = 222

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 115/222 (51%), Gaps = 5/222 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +R  +LE+ IGY F + +LL++ALTH S S   + + ERLEFLGD ++  +++  LF  F
Sbjct: 1   MRRQSLEQAIGYHFRDSTLLQRALTHRSAS---RANNERLEFLGDSVINHIVAEALFLKF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EG+L+     LV  E  + +A  L+LA  + + +  RK       SI AD VE++ 
Sbjct: 58  PDADEGQLTRLRAILVRGEYLAGLAHGLELADALILGAGERKSGGRQRRSILADAVEAIA 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
            A+ +D         V +++ +   +      +D KT LQEW  A+    P Y +    G
Sbjct: 118 GAMLIDSEFATVRKVVLQWYHEGLDEITLDAVKDPKTRLQEWLQARGEELPSYDLVQVDG 177

Query: 183 PDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKRE 223
            DH   FTV  +++G   A  G   S+R AEQ AA   L+R 
Sbjct: 178 EDHRQSFTVTCQLAGRDLALTGRGSSRRRAEQAAAKATLERL 219


>gi|290476134|ref|YP_003469034.1| RNase III, ds RNA [Xenorhabdus bovienii SS-2004]
 gi|289175467|emb|CBJ82270.1| RNase III, ds RNA [Xenorhabdus bovienii SS-2004]
          Length = 226

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 71/213 (33%), Positives = 114/213 (53%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+++  + L++++GY F    LL +ALTH S +  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNSIIINRLQRKLGYTFIQHDLLLQALTHRSANSKH---NERLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD +E
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGHRRESILADSIE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI A++LD  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGAIFLDSDIQTIERIILSWYETRLNEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRA 210
              G  HD  FT+  +ISG   P +G+  S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQISGFEQPVRGVGSSRRK 210


>gi|33593415|ref|NP_881059.1| ribonuclease III [Bordetella pertussis Tohama I]
 gi|33597819|ref|NP_885462.1| ribonuclease III [Bordetella parapertussis 12822]
 gi|33602721|ref|NP_890281.1| ribonuclease III [Bordetella bronchiseptica RB50]
 gi|81424808|sp|Q7VW39|RNC_BORPE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|81426476|sp|Q7W5J6|RNC_BORPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|81429935|sp|Q7WD32|RNC_BORBR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|33572771|emb|CAE42703.1| ribonuclease III [Bordetella pertussis Tohama I]
 gi|33574248|emb|CAE38580.1| ribonuclease III [Bordetella parapertussis]
 gi|33577163|emb|CAE35720.1| ribonuclease III [Bordetella bronchiseptica RB50]
 gi|332382824|gb|AEE67671.1| ribonuclease III [Bordetella pertussis CS]
          Length = 256

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 76/224 (33%), Positives = 116/224 (51%), Gaps = 6/224 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+A+  +TLE R+ + F +++LLE+ALTH S         ERLEFLGD +L  +++ +LF
Sbjct: 1   MTAMSLATLETRLDHRFGDKALLEQALTHRS---HGARHNERLEFLGDSVLNFVVAAMLF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             +    EG+LS    +LV   + + +A+ LDL+ ++R+     K       SI AD VE
Sbjct: 58  ERYGKLDEGDLSRLRANLVKQASLADIAQRLDLSQYLRLGEGELKSGGFRRPSILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +L  A++LD G E A   + + ++     +      +DAKT LQE+   +    P+Y V 
Sbjct: 118 ALFGAVFLDAGFEAARRVIVRQYQPVMAHVDPKTLGKDAKTLLQEFLQGRKLALPQYTVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221
              G  H  +F V   I  L         S+RAAEQ AA   L+
Sbjct: 178 ATHGAAHSQQFEVECAIPALEIKIVAPGASRRAAEQSAAKVALE 221


>gi|15595967|ref|NP_249461.1| ribonuclease III [Pseudomonas aeruginosa PAO1]
 gi|107100231|ref|ZP_01364149.1| hypothetical protein PaerPA_01001254 [Pseudomonas aeruginosa PACS2]
 gi|116048686|ref|YP_792514.1| ribonuclease III [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218893287|ref|YP_002442156.1| ribonuclease III [Pseudomonas aeruginosa LESB58]
 gi|254239132|ref|ZP_04932455.1| ribonuclease III [Pseudomonas aeruginosa C3719]
 gi|254245025|ref|ZP_04938347.1| ribonuclease III [Pseudomonas aeruginosa 2192]
 gi|296390880|ref|ZP_06880355.1| ribonuclease III [Pseudomonas aeruginosa PAb1]
 gi|313105592|ref|ZP_07791858.1| ribonuclease III [Pseudomonas aeruginosa 39016]
 gi|7531195|sp|Q9XCX9|RNC_PSEAE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|122257792|sp|Q02HS2|RNC_PSEAB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226735378|sp|B7UYX2|RNC_PSEA8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|5114183|gb|AAD40229.1|AF123492_1 RNase III [Pseudomonas aeruginosa]
 gi|9946659|gb|AAG04159.1|AE004512_2 ribonuclease III [Pseudomonas aeruginosa PAO1]
 gi|115583907|gb|ABJ09922.1| ribonuclease III [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126171063|gb|EAZ56574.1| ribonuclease III [Pseudomonas aeruginosa C3719]
 gi|126198403|gb|EAZ62466.1| ribonuclease III [Pseudomonas aeruginosa 2192]
 gi|218773515|emb|CAW29327.1| ribonuclease III [Pseudomonas aeruginosa LESB58]
 gi|310878360|gb|EFQ36954.1| ribonuclease III [Pseudomonas aeruginosa 39016]
          Length = 229

 Score =  251 bits (641), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 79/216 (36%), Positives = 113/216 (52%), Gaps = 7/216 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           MS      LE+++GY F +R L+  ALTH S +     + ERLEFLGD IL  +I   LF
Sbjct: 1   MSN-SLDRLERKLGYTFKDRDLMVLALTHRSYA---GRNNERLEFLGDAILNFVIGEALF 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           +HF  A+EG+LS     LV  ET + +AR  ++  ++R+ S   K       SI AD +E
Sbjct: 57  HHFPQAREGQLSRLRARLVKGETLALLARGFEVGDYLRLGSGELKSGGFRRESILADAME 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI A+YLD G++ A   +  +     R L      +D KT LQE+  ++    P Y+V 
Sbjct: 117 ALIGAIYLDTGMDSARERIIAWLGPQLRELTPVDTNKDPKTRLQEFLQSRGCDLPRYEVV 176

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQ 213
              G  H   F V  E++ L+    G   S+R AEQ
Sbjct: 177 DIQGEPHCRTFFVDCEVALLSDKTHGHGGSRRIAEQ 212


>gi|52424423|ref|YP_087560.1| ribonuclease III [Mannheimia succiniciproducens MBEL55E]
 gi|81387548|sp|Q65VN5|RNC_MANSM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|52306475|gb|AAU36975.1| Rnc protein [Mannheimia succiniciproducens MBEL55E]
          Length = 224

 Score =  251 bits (641), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 73/218 (33%), Positives = 111/218 (50%), Gaps = 6/218 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              L+++I Y F + +LL++ALTH S +    +  ERLEFLGD IL   I+  L++ F  
Sbjct: 4   LDRLQRQISYEFKDITLLKQALTHRSAA---TKHNERLEFLGDAILNYTIADALYHQFPK 60

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    +LV   T + +AR+  L  ++ +     K       SI AD VE++I A
Sbjct: 61  CNEGELSRMRATLVREPTLAILARQFKLGEYMALGHGELKSGGFRRESILADCVEAIIGA 120

Query: 126 LYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           + LD  +  A      ++++  R +K G+ ++D KT LQE+        P Y V    G 
Sbjct: 121 ISLDSSLVSATQITLHWYEKLLREIKPGENQKDPKTRLQEYLQGHRLALPTYDVKDIKGE 180

Query: 184 DHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVL 220
            H   FT+   +  L     G+  S+R AEQ AA ++L
Sbjct: 181 AHCQTFTIECHVPNLDRTFIGVGSSRRKAEQAAAEQIL 218


>gi|291533418|emb|CBL06531.1| RNAse III [Megamonas hypermegale ART12/1]
          Length = 240

 Score =  251 bits (641), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 81/229 (35%), Positives = 118/229 (51%), Gaps = 8/229 (3%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTLL 59
             +   L  R+G  F + +LL +ALTH+S ++  ++     ERLEFLGD +L L  ST L
Sbjct: 8   KQKLGELVVRLGVKFNDLNLLNQALTHTSYANEAKDHSLHNERLEFLGDAVLELASSTYL 67

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F  F    EGE++    S+V   + +++A  L++  ++ +    R        SI AD  
Sbjct: 68  FKTFTQMPEGEMTKARASVVCETSLAKLAMNLNVGQYLLLGKGERLTGGEHRPSILADAF 127

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           ES+I A+YLD G + A  +V     +   A+K G   +D KT LQE   AK G   EYK+
Sbjct: 128 ESIIGAIYLDQGWQTAYEYVLDKLNEEFIAVKYGYNLKDYKTILQEVVQAK-GQHVEYKL 186

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
              +GPDH   F   V +      +G   +K+ AEQ AA E LK+  IW
Sbjct: 187 LAETGPDHAKTFEFAVVVDKKIDGKGKGTTKKEAEQHAAYEALKK--IW 233


>gi|187251071|ref|YP_001875553.1| ribonuclease III [Elusimicrobium minutum Pei191]
 gi|186971231|gb|ACC98216.1| Ribonuclease III [Elusimicrobium minutum Pei191]
          Length = 221

 Score =  251 bits (641), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 71/219 (32%), Positives = 118/219 (53%), Gaps = 4/219 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
           + +E+ + Y+F N+ L+ +ALTH S +   +  +  ERLEFLGD +LGL+ +  +++ + 
Sbjct: 3   NDIEQVLDYSFKNKELIREALTHKSFTGERRSVKHNERLEFLGDSVLGLVAAEYIYSKYP 62

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             +EG LS   + LVS       A ELDL +++ + +           SI ++ +E+++ 
Sbjct: 63  EVEEGVLSKIKSGLVSRHNLYLWASELDLGAYLALGAGEAATGGRTRESILSNAMEAVLG 122

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A+YLDGG E     ++K+   ++L   +   D K+ LQE    K+   PEY+V    GP+
Sbjct: 123 AVYLDGGFESVKNIINKWISTQSL--TEVSSDYKSTLQEIVQKKYKSVPEYEVIQTVGPE 180

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           H+  FTVVV        +G   +K+ AEQ AA   L+  
Sbjct: 181 HEKIFTVVVSSLKKELGRGRGKNKKLAEQDAAKNALENL 219


>gi|303248688|ref|ZP_07334942.1| ribonuclease III [Desulfovibrio fructosovorans JJ]
 gi|302489944|gb|EFL49870.1| ribonuclease III [Desulfovibrio fructosovorans JJ]
          Length = 233

 Score =  251 bits (641), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 113/221 (51%), Gaps = 5/221 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHF 63
           + LE  +G+ F    LL  ALTHSS ++   E     ERLEFLGD +L L +S  LF  F
Sbjct: 5   TALENALGHVFVRPELLTTALTHSSYANERGEAAKHNERLEFLGDAVLELSVSEELFARF 64

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EGEL++  + LV+  + + +A  L L   I +             S+ +DV E++I
Sbjct: 65  PEAPEGELTLLRSQLVNESSLAAMALRLSLEDHILLGKGEENQGGRTRPSLLSDVFEAVI 124

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            AL+LDGG  VA +FV+  + +           RD K+ LQE+        P Y +    
Sbjct: 125 GALFLDGGYGVAKSFVNATFAEVWPVRSVAPKTRDYKSRLQEYTQKVHKARPVYTLLDSE 184

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           GP+HD RFTV +E+        M+ S + AEQ+AA   L++
Sbjct: 185 GPEHDKRFTVRLELPDGHALTAMEKSVKKAEQMAARLALEK 225


>gi|288958023|ref|YP_003448364.1| ribonuclease III [Azospirillum sp. B510]
 gi|288910331|dbj|BAI71820.1| ribonuclease III [Azospirillum sp. B510]
          Length = 261

 Score =  251 bits (641), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 80/233 (34%), Positives = 129/233 (55%), Gaps = 10/233 (4%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSI----------SHSYQESYERLEFLGDRILG 52
           +   + L + +G+ F+N +LL  A+TH S+                +YERLEFLGDR++G
Sbjct: 25  SADVAGLARALGHEFSNPTLLCDAVTHPSLMGLERTGRKGHKGPGIAYERLEFLGDRVVG 84

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
           L+++  L   +   +EG L+ R  +LV  E+  +VA  + L +++R+S    +       
Sbjct: 85  LVVAQWLLERYPDEREGALAKRHAALVRRESLGRVADAIGLGAYLRLSPAEAQSGGRENR 144

Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT 172
           +I  D  E+++ A+YLDGG+E    FV +       K+     D+KT LQEWA  +    
Sbjct: 145 TILGDACEAVLGAMYLDGGLEPVTRFVRQALAGEIDKATPPPLDSKTTLQEWAQGRGKPL 204

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           P Y++T RSGP H+P F V V ++G+ P  G   SKR AE+ AA+ +L++ G+
Sbjct: 205 PRYELTERSGPAHEPLFVVAVHVAGMDPVSGSGSSKRIAEKKAASALLRQVGV 257


>gi|90580325|ref|ZP_01236132.1| ribonuclease III [Vibrio angustum S14]
 gi|90438627|gb|EAS63811.1| ribonuclease III [Vibrio angustum S14]
          Length = 224

 Score =  251 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 72/207 (34%), Positives = 112/207 (54%), Gaps = 6/207 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L++++GY F N  L+  ALTH S + ++    ERLEFLGD IL  +I+  L++ F S 
Sbjct: 6   NRLQRKLGYQFNNCELMTLALTHRSANGTH---NERLEFLGDSILSFVIADDLYHRFPSV 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG++S    +LV  +T +++ RE +L   + +     K       SI AD VE++I A+
Sbjct: 63  DEGDMSRMRATLVRGKTLAELGREFELGDHLLLGPGELKSGGFRRDSILADCVEAIIGAI 122

Query: 127 YLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD  +E   + V  ++K R   ++ G  ++D KT LQE    +    P Y VT   G  
Sbjct: 123 YLDSDVEQVRSIVLAWYKTRLDTIEPGINQKDPKTRLQECLQGRRLPLPAYTVTKVQGEA 182

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRA 210
           H+  FTV  +++GL  P  G   S+R 
Sbjct: 183 HNQEFTVQCDVTGLDKPVIGKGGSRRK 209


>gi|260663569|ref|ZP_05864459.1| ribonuclease III [Lactobacillus fermentum 28-3-CHN]
 gi|260552110|gb|EEX25163.1| ribonuclease III [Lactobacillus fermentum 28-3-CHN]
          Length = 232

 Score =  251 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 107/229 (46%), Gaps = 7/229 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M       L K  G  F N +LL +A T +S  + +     + YER+EFLGD +L L +S
Sbjct: 1   MITQLQDYLAKTYGIHFNNPALLAEAFTQASYVNEHPHENLKYYERIEFLGDAVLQLFVS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             ++  +    +G+L+    ++V  ++ S+ A+E     +IR+             S+  
Sbjct: 61  EYIYRRYPELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGKGEEMAGARNRASLLC 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D+ ES I ALYLD G +    F+      + L  G F    DAKT LQE+      V  E
Sbjct: 121 DIFESFIGALYLDQGRQAVEQFIQTVIFPK-LDLGWFDHAVDAKTSLQEFLQRNGDVAIE 179

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           Y +    G ++DP F V V + G   A G   SK+ AE  AA   L++ 
Sbjct: 180 YDLLSEGGTENDPVFEVEVTVDGKKVATGQGSSKKHAEMDAAKHALEKL 228


>gi|168188027|ref|ZP_02622662.1| ribonuclease III [Clostridium botulinum C str. Eklund]
 gi|169294133|gb|EDS76266.1| ribonuclease III [Clostridium botulinum C str. Eklund]
          Length = 237

 Score =  251 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 116/223 (52%), Gaps = 4/223 (1%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLF 60
            +  + +E ++   F + ++L+ ALTHSS  +  +   S ERLEFLGD IL L IS LL+
Sbjct: 6   KIILNEVENKLKVKFNDINILDTALTHSSFINENKNINSNERLEFLGDSILQLCISELLY 65

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N +    EG L+ +   +V   +  +VA++ ++  +I +S           TSI +D VE
Sbjct: 66  NKYKDEPEGFLTKKRALIVCGNSLHEVAKKWNIGKYINMSKGEEMTGGRTRTSILSDCVE 125

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++IA++YLD G EVA  F+ + + +   K+   +   D KT+LQE          EY + 
Sbjct: 126 AIIASIYLDQGYEVAKNFILENFDEIIQKAHSNEIILDYKTKLQEIIQKFGEYNIEYTLI 185

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              GP H  +F   V +  L    G   SK+ +EQ AA E LK
Sbjct: 186 SFEGPPHRRKFVTEVSVDSLVKGIGEGYSKKESEQNAAREALK 228


>gi|184155714|ref|YP_001844054.1| ribonuclease III [Lactobacillus fermentum IFO 3956]
 gi|227515694|ref|ZP_03945743.1| ribonuclease III [Lactobacillus fermentum ATCC 14931]
 gi|238692982|sp|B2GD42|RNC_LACF3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|183227058|dbj|BAG27574.1| ribonuclease III [Lactobacillus fermentum IFO 3956]
 gi|227085942|gb|EEI21254.1| ribonuclease III [Lactobacillus fermentum ATCC 14931]
 gi|299783404|gb|ADJ41402.1| Ribonuclease 3 (Ribonuclease III) (RNase III) [Lactobacillus
           fermentum CECT 5716]
          Length = 232

 Score =  250 bits (640), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 107/229 (46%), Gaps = 7/229 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M       L K  G  F N +LL +A T +S  + +     + YER+EFLGD +L L +S
Sbjct: 1   MITQLQDYLAKTYGIHFNNPALLAEAFTQASYVNEHPHENLKYYERIEFLGDAVLQLFVS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             ++  +    +G+L+    ++V  ++ S+ A+E     +IR+             S+  
Sbjct: 61  EYIYRRYPELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGKGEEMAGARNRASLLC 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D+ ES I ALYLD G +    F+      + L  G F    DAKT LQE+      V  E
Sbjct: 121 DIFESFIGALYLDQGRQAVEQFIQTVIFPK-LDLGWFDHAVDAKTSLQEFLQRNGDVAIE 179

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           Y +    G ++DP F V V + G   A G   SK+ AE  AA   L++ 
Sbjct: 180 YDLLSEGGTENDPVFEVEVTVDGKKVATGQGSSKKHAEMEAAKHALEKL 228


>gi|152986476|ref|YP_001350091.1| ribonuclease III [Pseudomonas aeruginosa PA7]
 gi|189043330|sp|A6VAK6|RNC_PSEA7 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|150961634|gb|ABR83659.1| ribonuclease III [Pseudomonas aeruginosa PA7]
          Length = 229

 Score =  250 bits (640), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 76/211 (36%), Positives = 111/211 (52%), Gaps = 6/211 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              LE+++GY F ++ L+  ALTH S +     + ERLEFLGD IL  +I   LF+HF  
Sbjct: 5   LDRLERKLGYTFKDQDLMVLALTHRSYA---GRNNERLEFLGDAILNFVIGEALFHHFPQ 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A+EG+LS     LV  ET + +AR  ++  ++R+ S   K       SI AD +E+LI A
Sbjct: 62  AREGQLSRLRARLVKGETLALLARGFEVGDYLRLGSGELKSGGFRRESILADAMEALIGA 121

Query: 126 LYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YLD G++ A   +  +     R L      +D KT LQE+  ++    P Y+V    G 
Sbjct: 122 IYLDTGMDSARERIIAWLGPQLRELTPVDTNKDPKTRLQEFLQSRGCDLPRYEVVDIQGE 181

Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSKRAAEQ 213
            H   F V  E++ L+    G   S+R AEQ
Sbjct: 182 PHCRTFFVDCEVALLSDKTHGHGGSRRIAEQ 212


>gi|284048724|ref|YP_003399063.1| ribonuclease III [Acidaminococcus fermentans DSM 20731]
 gi|283952945|gb|ADB47748.1| ribonuclease III [Acidaminococcus fermentans DSM 20731]
          Length = 234

 Score =  250 bits (640), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 73/233 (31%), Positives = 107/233 (45%), Gaps = 10/233 (4%)

Query: 1   MSALRYSTLE---KRIGYAFANRSLLEKALTHSSISHSYQES-----YERLEFLGDRILG 52
           M   R   LE   +++G    +  LL+ ALTH+S ++  +++      +RLEFLGD +L 
Sbjct: 1   MEEQRQKELEGLCRQLGMEMKDLHLLDMALTHTSYAYESKKNPRPQHNQRLEFLGDSVLS 60

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
           L++ST ++       EGELS     LV  ET +Q+A E  L   + +             
Sbjct: 61  LVVSTHIYKTCPQMDEGELSKLRAFLVCEETLAQLATENHLGDHLLLGKGEINLDGEENP 120

Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFG 170
           SI AD  ES++ A YLD G       +++    R   L +    RD KT LQE       
Sbjct: 121 SILADAFESVLGAYYLDQGFARVTGLLNRLLISRIPELTADGIDRDYKTRLQEVVQKDGP 180

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               Y      GP H+  F + V ++G    +G   +K+ AEQ AA E LK  
Sbjct: 181 AEILYDQVSAEGPSHNRTFVMRVLVNGNELGKGRGRTKKEAEQRAAREALKAL 233


>gi|227513461|ref|ZP_03943510.1| ribonuclease III [Lactobacillus buchneri ATCC 11577]
 gi|227524604|ref|ZP_03954653.1| ribonuclease III [Lactobacillus hilgardii ATCC 8290]
 gi|227083334|gb|EEI18646.1| ribonuclease III [Lactobacillus buchneri ATCC 11577]
 gi|227088279|gb|EEI23591.1| ribonuclease III [Lactobacillus hilgardii ATCC 8290]
          Length = 236

 Score =  250 bits (640), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 75/219 (34%), Positives = 113/219 (51%), Gaps = 7/219 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFD 64
           L++       ++ LL++A T +S  + +++     YERLEFLGD +L L++S  +F  + 
Sbjct: 9   LKQDFNIHIDDQDLLDEAFTQASYVNEHRDQHLKFYERLEFLGDAVLQLIVSEYIFKRYP 68

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              +G L+    ++V+ ++ S  ARE     +IR+     K       S+  D+ ES + 
Sbjct: 69  KLPQGRLTRLRAAMVNEQSFSTFARECHFNKYIRLGKGEEKAGARDRDSLLCDIFESFVG 128

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182
           ALYLD G +V   FV +    + L  G F +  D KTELQE A A   V  +Y++    G
Sbjct: 129 ALYLDQGKKVVEGFVQQVIFPK-LDEGMFAKFFDHKTELQELAQADGPVDIDYELVDEYG 187

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           PD+D  F V V I       G+  SK+ AEQ AA E LK
Sbjct: 188 PDNDRLFKVNVAIDDKLLGVGIGHSKKDAEQRAAQEALK 226


>gi|227510452|ref|ZP_03940501.1| ribonuclease III [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227190104|gb|EEI70171.1| ribonuclease III [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 236

 Score =  250 bits (640), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 75/219 (34%), Positives = 112/219 (51%), Gaps = 7/219 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFD 64
           L++       ++ LL++A T +S  + +++     YERLEFLGD +L L++S  +F  + 
Sbjct: 9   LKQDFNIHIDDQDLLDEAFTQASYVNEHRDQHLKFYERLEFLGDAVLQLIVSEYIFKRYP 68

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              +G L+    ++V+ ++ S  ARE     +IR+     K       S+  D+ ES + 
Sbjct: 69  KLPQGRLTRLRAAMVNEQSFSTFARECHFNKYIRLGKGEEKAGARDRDSLLCDIFESFVG 128

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182
           ALYLD G  V   FV +    + L  G F +  D KTELQE A A   V  +Y++    G
Sbjct: 129 ALYLDQGKTVVEGFVQQVIFPK-LDEGMFAKFFDHKTELQELAQADGPVDIDYELVDEYG 187

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           PD+D  F V V I       G+  SK+ AEQ AA E LK
Sbjct: 188 PDNDRLFKVNVAIDDKLLGVGIGHSKKDAEQRAAQEALK 226


>gi|322514172|ref|ZP_08067237.1| ribonuclease III [Actinobacillus ureae ATCC 25976]
 gi|322119958|gb|EFX91960.1| ribonuclease III [Actinobacillus ureae ATCC 25976]
          Length = 222

 Score =  250 bits (640), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 77/224 (34%), Positives = 116/224 (51%), Gaps = 6/224 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +    L+K++ Y F +   L +ALTH S      ++ ERLEFLGD IL   I   LF  F
Sbjct: 1   MHIERLQKKLDYKFISLDYLLQALTHRSAG---AKNNERLEFLGDSILNFAIGKALFEKF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EGELS    +LV  +T + +AR+ DL  ++++ +   K       SI +D VE++I
Sbjct: 58  PKANEGELSRMRATLVREQTLAILARQFDLGEYMKLGAGELKSGGYRRESILSDCVEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+YLD G++ A   V  +++     +K    ++D KT LQE+   +    P Y+V    
Sbjct: 118 AAIYLDSGMDNAIERVSVWYQDLLAEMKPSDAQKDPKTRLQEFLQGRKLKLPAYEVIDIK 177

Query: 182 GPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREG 224
           G  H+  F V  +I        G+  S+R AEQ AA +VL +  
Sbjct: 178 GEAHNQTFKVTCKIETFDETFIGVGTSRRKAEQNAAEQVLVKLN 221


>gi|317058970|ref|ZP_07923455.1| ribonuclease III [Fusobacterium sp. 3_1_5R]
 gi|313684646|gb|EFS21481.1| ribonuclease III [Fusobacterium sp. 3_1_5R]
          Length = 235

 Score =  250 bits (640), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 72/233 (30%), Positives = 118/233 (50%), Gaps = 9/233 (3%)

Query: 1   MSAL--RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLL 54
           MS++      LE RI Y F +++LL+ AL H S  + ++     + E+LE LGD +LGL+
Sbjct: 1   MSSVSKNLVDLEHRINYYFNDKNLLKNALIHRSFGNEHKHYKNINNEKLELLGDAVLGLV 60

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
           ++  L+  +   KEG L+   +  VS    + ++R+L +  ++ +S            SI
Sbjct: 61  VAEYLYQKYPEEKEGVLAKIKSMAVSEPVLASISRKLRIGEYLLLSKGEMVTGGRDRNSI 120

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVT 172
             DV E+++ A+YLD G   A  +V  + K        F    D KT LQE+   K+   
Sbjct: 121 LGDVFEAILGAIYLDSGFFAAKEYVLFHLKDMIDHIDDFEEILDFKTILQEYCQKKYRDI 180

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           P+Y +    GPDH   F + V+I     A+    +K+ AEQ+AA ++ K  G+
Sbjct: 181 PKYTLVGEEGPDHRKLFEMQVQIQNN-IAKAKGTNKKIAEQMAAKQLCKELGV 232


>gi|225551799|ref|ZP_03772742.1| ribonuclease III [Borrelia sp. SV1]
 gi|225371594|gb|EEH01021.1| ribonuclease III [Borrelia sp. SV1]
          Length = 245

 Score =  250 bits (640), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 116/226 (51%), Gaps = 5/226 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLL 59
             + S   + +   F+N  LL+ AL HSS S+       + ERLEFLGD +L L+I+  L
Sbjct: 15  KAQLSKFLENLSIDFSNFDLLDTALCHSSYSNELDQKSSNNERLEFLGDSVLNLIITDHL 74

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  + +  EGELS   + +VS ++ S +ARE++L S+I +      +       I AD +
Sbjct: 75  YKTYPNKSEGELSKARSYIVSEDSLSNIAREINLGSYILLGRGEESNDGRNKKGILADAI 134

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E+ + A+YLD G   A  FV   +    R + +    +D K+ LQE+   K+ ++P YK+
Sbjct: 135 EAFVGAIYLDSGFLRATEFVVGLFDMYIRLMFNRGDFKDYKSLLQEYVQKKYKISPSYKL 194

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               GPDHD  F V + +     + G   SK+ AE  AA   LK  
Sbjct: 195 DKEIGPDHDKVFCVELYVGENFISNGKGKSKKEAEMRAAEVALKAM 240


>gi|73748788|ref|YP_308027.1| ribonuclease III [Dehalococcoides sp. CBDB1]
 gi|90101624|sp|Q3ZXY9|RNC_DEHSC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|73660504|emb|CAI83111.1| ribonuclease III [Dehalococcoides sp. CBDB1]
          Length = 237

 Score =  250 bits (640), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 115/225 (51%), Gaps = 6/225 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59
           L  + LE  +G  F   SLLE+AL H+S  +        S ER+EFLGD +LG++ +  L
Sbjct: 2   LDLTELENSLGVKFEQPSLLEQALIHTSWVNENPNHSSGSNERMEFLGDAVLGVIFADRL 61

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           ++ F   +EG+L+   + LV  E+  +VA  ++L  ++ +          F  +  A   
Sbjct: 62  YHDFPDIQEGDLTRFRSLLVRRESLVRVALGINLGKYLYLGRGEDVSKGRFKPANLAGAF 121

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177
           E+++AA+Y+D G++V    + + +K    +        D K+ LQE   A+  +TP Y++
Sbjct: 122 EAVLAAIYIDKGMDVTREVIFRLFKTEMERVQTLSSNIDYKSRLQELIQAQLQLTPRYRI 181

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           T  SGP+H+  F   V       A+G   SK+ AE  AA   L++
Sbjct: 182 TNFSGPEHNRLFIAEVYAEDRVFAEGSGRSKKEAETNAAKVALQQ 226


>gi|167037696|ref|YP_001665274.1| ribonuclease III [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|307264836|ref|ZP_07546398.1| ribonuclease III [Thermoanaerobacter wiegelii Rt8.B1]
 gi|320116111|ref|YP_004186270.1| ribonuclease III [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|326389510|ref|ZP_08211077.1| ribonuclease III [Thermoanaerobacter ethanolicus JW 200]
 gi|166856530|gb|ABY94938.1| Ribonuclease III [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|306920094|gb|EFN50306.1| ribonuclease III [Thermoanaerobacter wiegelii Rt8.B1]
 gi|319929202|gb|ADV79887.1| ribonuclease III [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|325994515|gb|EGD52940.1| ribonuclease III [Thermoanaerobacter ethanolicus JW 200]
          Length = 246

 Score =  250 bits (640), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 76/213 (35%), Positives = 115/213 (53%), Gaps = 5/213 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTL 58
                S LEKRI Y+F +++LL +ALTHSS +H  + S    ERLEFLGD +L L+IS  
Sbjct: 16  KRENLSELEKRINYSFKDKNLLIEALTHSSWAHEGKNSKISNERLEFLGDSVLSLVISEY 75

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L+ +    +EG LS     +V   + ++ ARE++L +F+R+             SI AD 
Sbjct: 76  LYKNRKDLEEGSLSKYRAEIVCEPSLARCAREIELGNFLRIGKGEELTGGRERDSILADA 135

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           +E+++AA+YLDGG+EV    + + +K     +  G   RD KT+LQE   +       Y+
Sbjct: 136 MEAILAAVYLDGGLEVVRNVILELFKNIIEEVLEGLIYRDYKTKLQEVVQSMEIGKIIYE 195

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           +    GPDH+  F   V I  +   +G   SK+
Sbjct: 196 LIEEMGPDHNKTFVTQVRIGDVILGKGYGKSKK 228


>gi|300087535|ref|YP_003758057.1| ribonuclease III [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527268|gb|ADJ25736.1| ribonuclease III [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 234

 Score =  250 bits (640), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 113/223 (50%), Gaps = 6/223 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60
            Y  ++ R+G  FAN ++LE AL HSS  +   +      ERLEFLGD +LG+ I+  LF
Sbjct: 3   DYEEIQARLGVRFANPAILETALIHSSFVNETADQSISHNERLEFLGDAVLGMWIAERLF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG L+   + LV  ET + +A EL L   + +     +       +  +  +E
Sbjct: 63  RDFPDEPEGTLTRYRSLLVRRETLAFIADELQLGEALYLGRGEIRSGGRRKPANLSRALE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++IAA+YLD G +  G  +D+ +++    L       D+K+ LQE    ++   PEY++ 
Sbjct: 123 AVIAAVYLDRGYDTTGQVIDRLFERHFADLPGMAAAADSKSHLQEIVQGRYHTPPEYRII 182

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             +GPD+   FT  V ++G     G    K+ AE  AA E L+
Sbjct: 183 EENGPDNAQSFTAEVIVNGQVRGTGRGSRKKDAETAAAQEALE 225


>gi|89070097|ref|ZP_01157427.1| Ribonuclease III [Oceanicola granulosus HTCC2516]
 gi|89044318|gb|EAR50461.1| Ribonuclease III [Oceanicola granulosus HTCC2516]
          Length = 226

 Score =  250 bits (640), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 87/221 (39%), Positives = 127/221 (57%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           +   +    R+G+ F N  LL +ALTH S S + +   +RLEFLGDR+LGL+++  LF  
Sbjct: 4   SADLTAFCDRLGHRFENPELLLRALTHPSFSSTGRGDNQRLEFLGDRVLGLVMAEALFEA 63

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
              A+EG L+ R+N+LV  ETC++VARE+D+ + +++     K       ++ AD +E++
Sbjct: 64  DPEAREGLLAPRYNALVRKETCAEVAREIDIGAVLKLGRSEMKTGGRRKEALLADAMEAV 123

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           IAA+Y D G   A   V  +W +R     +  RDAKT LQE A A+    P Y+   R G
Sbjct: 124 IAAIYRDAGFARAREVVRAHWGKRIGAVAEDARDAKTALQELAQARGEPPPGYREISRHG 183

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           PDH P FT+ V ++    A+    SKR AEQ AA  +L R 
Sbjct: 184 PDHQPLFTIEVRLATGESARAEAGSKRQAEQAAARTLLDRL 224


>gi|237737605|ref|ZP_04568086.1| ribonuclease III [Fusobacterium mortiferum ATCC 9817]
 gi|229419485|gb|EEO34532.1| ribonuclease III [Fusobacterium mortiferum ATCC 9817]
          Length = 240

 Score =  250 bits (640), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 70/231 (30%), Positives = 120/231 (51%), Gaps = 10/231 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60
            Y   EK +GY+F N+ LL+ +L H S  + ++     S ERLE LGD +L L+++  L+
Sbjct: 4   NYLDFEKNLGYSFKNKELLKNSLIHRSFGNEHRRYKKISNERLELLGDAVLDLVVTEYLY 63

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             + ++ EG+L+   + +VS    + ++++L++  ++ +S           +SI  D  E
Sbjct: 64  KSYANSTEGDLAKVKSMVVSEPVLAGISKKLEVGKYLLLSRGEELTGGRERSSILGDAFE 123

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +++ A+Y+D   E A  FV  + K     + S +   D KT LQE++   + V PEY V 
Sbjct: 124 AILGAIYMDSNFETAKEFVLTHIKDSIDHVDSNEEILDFKTILQEYSQKNYRVIPEYSVI 183

Query: 179 FRSGPDHDPRFTVVVEISG----LAPAQGMDCSKRAAEQVAAAEVLKREGI 225
              GPDH   F + V+I          +G   +K+ AEQ AA  + K+ G+
Sbjct: 184 NEIGPDHQKIFEIEVKIDNGIDEEKSDRGTGKNKKTAEQAAAKSLCKKLGV 234


>gi|117928781|ref|YP_873332.1| ribonuclease III [Acidothermus cellulolyticus 11B]
 gi|117649244|gb|ABK53346.1| RNAse III [Acidothermus cellulolyticus 11B]
          Length = 246

 Score =  250 bits (640), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 74/218 (33%), Positives = 113/218 (51%), Gaps = 6/218 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
              L++  G   +  +LLE+A+TH S ++      + ERLEFLGD +LGL+I+  L+  F
Sbjct: 16  LEELQQIAGLPLS-LALLERAVTHRSYAYENGGLPTNERLEFLGDAVLGLVITDTLYRRF 74

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+L+   +++V+    ++VAR L L  F+R+            +SI AD +E+LI
Sbjct: 75  PELPEGQLAKFRSAVVNMRALAEVARSLRLGEFLRLGRGEESTGGRNKSSILADALEALI 134

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+Y++ G++ A  FV + +     ++       D KT LQE   A+    P Y +    
Sbjct: 135 GAVYVEHGLDGAAEFVHRLFDPLIDRAAALGAGLDWKTSLQELTAAQHLGVPFYDL-SER 193

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           GPDH+  FT  V I G     G   SK+ AEQ AA E 
Sbjct: 194 GPDHEKVFTAEVRIGGRVYGTGSGHSKKEAEQRAAQEA 231


>gi|325971140|ref|YP_004247331.1| ribonuclease 3 [Spirochaeta sp. Buddy]
 gi|324026378|gb|ADY13137.1| Ribonuclease 3 [Spirochaeta sp. Buddy]
          Length = 248

 Score =  250 bits (640), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 68/214 (31%), Positives = 114/214 (53%), Gaps = 5/214 (2%)

Query: 15  YAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71
              +N  LL  A TH S ++   +   + ERLEFLGD +LG+ ++  LF +F +  EG+ 
Sbjct: 29  ITISNLELLNLAFTHRSFANETSDSVDNNERLEFLGDSVLGMCVADWLFRNFPAKAEGDF 88

Query: 72  SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131
           S   + +VS ++ + +AR+L +  ++ +             ++ AD +E+L AA YLD G
Sbjct: 89  SKIKSVVVSEDSLAMIARQLSVDKYLLLGKGEEFTGGRDKKALLADCMEALFAACYLDSG 148

Query: 132 IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
            E A +FV  Y +Q  +A+    + RD KT LQE+   ++   P Y +  ++GP+HD  F
Sbjct: 149 FEAAKSFVMLYLEQQIQAVLDDDYHRDYKTSLQEYMQKRWRKVPSYTLVRKTGPEHDFTF 208

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            V V+++G         +K+ AEQ+AA     + 
Sbjct: 209 FVEVDVNGQVFGPASGANKKQAEQMAAKLAYDQL 242


>gi|251781986|ref|YP_002996288.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|242390615|dbj|BAH81074.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
          Length = 230

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 112/226 (49%), Gaps = 9/226 (3%)

Query: 7   STLEKRI----GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58
             LE+ +       F + +LLE A TH+S ++ ++       ERLEFLGD +L L+IS  
Sbjct: 2   KKLEELLAASFDICFEDHTLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIISEY 61

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF  +    EG++S   + +V  E+ +  +R     ++I++     K       +I  D+
Sbjct: 62  LFAKYPKKTEGDMSKLRSMIVREESLAGFSRFCSFDTYIKLGKGEEKSGGRNRDTILGDL 121

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKV 177
            E+ + AL LD G++    F+ +    +  K   +  +D KT LQE   +K  +  +Y+V
Sbjct: 122 FEAFLGALLLDKGVDEVRRFLQQVMIPQVEKGNFEKVKDYKTCLQELLQSKGDIAIDYQV 181

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               GP H  +F V V ++    ++G+  SK+ AEQ AA   L + 
Sbjct: 182 ISEKGPAHAKQFEVAVFVNEEVLSKGLGKSKKMAEQDAAKNALVQL 227


>gi|153005020|ref|YP_001379345.1| ribonuclease III [Anaeromyxobacter sp. Fw109-5]
 gi|152028593|gb|ABS26361.1| Ribonuclease III [Anaeromyxobacter sp. Fw109-5]
          Length = 377

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 79/219 (36%), Positives = 117/219 (53%), Gaps = 7/219 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-----SYERLEFLGDRILGLLISTLLF 60
            +TLE R+G    +RS    ALTH S  + +++       ERLEFLGD ++ L +S  L 
Sbjct: 17  VATLEARLGLCLGDRSTALAALTHKSYVNEHRDEPGLGDNERLEFLGDAVIDLAVSHRLM 76

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F +A+EG+LS    ++V  +  S++AR LDL S +R+             S+ AD +E
Sbjct: 77  ERFPAAREGDLSKMRAAVVDEQGLSEMARALDLGSLLRLGRGEELTGGRRKASLLADAME 136

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +++AALYLD G+      +D++      +  +G   RD KT+LQE A ++   TP Y+V 
Sbjct: 137 AVVAALYLDAGLAPVLVLIDRFLGDAFARAAAGTLDRDFKTQLQELAQSRVRATPRYRVV 196

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
              GPDH   F V  E+ G    +G   SK+ AEQ AA 
Sbjct: 197 GEHGPDHSKTFEVETELRGEVVGRGTGRSKKDAEQAAAK 235


>gi|212710663|ref|ZP_03318791.1| hypothetical protein PROVALCAL_01729 [Providencia alcalifaciens DSM
           30120]
 gi|212686744|gb|EEB46272.1| hypothetical protein PROVALCAL_01729 [Providencia alcalifaciens DSM
           30120]
          Length = 226

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 72/213 (33%), Positives = 109/213 (51%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+      L++++GY F    LL +ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPSLLEKLQRKLGYTFKQNDLLIQALTHRSASSKH---NERLEFLGDSILSFVIANDLY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPKVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  ++K R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGIFLDSDIQTIEKIILAWYKARLDEISPGDKQKDPKTRLQEYLQGRHLPLPNYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRA 210
              G  HD  FT+  ++SG   P  G+  S+R 
Sbjct: 178 LVKGEAHDQEFTIHCQVSGIEEPIHGIGSSRRK 210


>gi|71892313|ref|YP_278047.1| RNase III [Candidatus Blochmannia pennsylvanicus str. BPEN]
 gi|90101614|sp|Q492D1|RNC_BLOPB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|71796419|gb|AAZ41170.1| RNase III [Candidatus Blochmannia pennsylvanicus str. BPEN]
          Length = 229

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 118/226 (52%), Gaps = 9/226 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  + L++++GY F    LL +ALTH S S+ +    ERLEFLGD IL  +I+ LL++ F
Sbjct: 1   MLVNALQEKLGYIFNRYDLLLQALTHRSSSNQH---NERLEFLGDAILNYVIANLLYHRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG +S    +LV   T + +ARE +L  ++++     K       SI A+ +E+LI
Sbjct: 58  PHISEGGMSRMRANLVRENTLATLAREFNLGDYLQLGQGELKSGGYQRESILANTIEALI 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKF-----RRDAKTELQEWAHAKFGVTPEYKVT 178
             ++LD  I+     +  ++K R      +     ++D KT LQE+   +    P Y + 
Sbjct: 118 GGIFLDSNIQTIEILIINWYKIRIDHMDPYASYDTQKDPKTRLQEYMQRRRLPLPVYWIN 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
              G  H+  FT+  ++S L  P  G   S+R AEQ AAA+VL+  
Sbjct: 178 QIIGEAHNQIFTINCQVSELTQPIIGCGSSRRRAEQNAAAKVLEAL 223


>gi|255320780|ref|ZP_05361955.1| ribonuclease III [Acinetobacter radioresistens SK82]
 gi|262379444|ref|ZP_06072600.1| ribonuclease III [Acinetobacter radioresistens SH164]
 gi|255302157|gb|EET81399.1| ribonuclease III [Acinetobacter radioresistens SK82]
 gi|262298901|gb|EEY86814.1| ribonuclease III [Acinetobacter radioresistens SH164]
          Length = 230

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 78/217 (35%), Positives = 117/217 (53%), Gaps = 5/217 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            L  RIGY F    LL+ ALTH S+SH Y  +YERLEFLGD +LG++I+  L++ +    
Sbjct: 12  RLPSRIGYQFKQPELLQLALTHRSVSHKY--NYERLEFLGDSLLGMIIANYLYHAYPFEN 69

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG L+    +LV  E   ++A +L L+  + +S+   K       SI AD VE++I A+Y
Sbjct: 70  EGRLTRMRATLVRQEALGKIANDLKLSQCLILSTGELKSGGHHRESILADTVEAIIGAIY 129

Query: 128 LDGG-IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           +D G +++    V K++      ++     +D K+ LQE+  A+    P Y+V    G  
Sbjct: 130 IDCGELKILQDIVLKWYGPYLNNIEPTDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDA 189

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            +  F V   +  L    G   S+R AEQ AAAE+LK
Sbjct: 190 PNQHFKVECSVDSLPKFIGEGSSRRFAEQAAAAEILK 226


>gi|229918600|ref|YP_002887246.1| ribonuclease III [Exiguobacterium sp. AT1b]
 gi|229470029|gb|ACQ71801.1| ribonuclease III [Exiguobacterium sp. AT1b]
          Length = 259

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 69/219 (31%), Positives = 105/219 (47%), Gaps = 4/219 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNH 62
           + +LE+R+   F+N  LL +A THSS  +  +   +  ERLEFLGD +L L +S  L+  
Sbjct: 31  FKSLEERLDVQFSNHDLLMQAFTHSSYVNEQRGLRKDNERLEFLGDAVLELTVSRFLYET 90

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +    EGEL+    ++V   +    A     + FI +             ++ ADV ES 
Sbjct: 91  YPERSEGELTKLRAAIVCEPSLVNFAEAFAFSDFILLGKGEELTGGRKRPALLADVFESY 150

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           I ALYLD GIE    F+ +    + L    + + D K++LQE    +      Y++    
Sbjct: 151 IGALYLDQGIEAVERFLAEAVFPKVLAGVFEEQTDFKSQLQESVQREGLGPVSYEIIEER 210

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           GP H   F     +S     +G+  SK+ AEQ+AA E L
Sbjct: 211 GPAHSREFVAHARLSDDIVGEGVGRSKKEAEQLAAKEAL 249


>gi|254785337|ref|YP_003072766.1| ribonuclease III [Teredinibacter turnerae T7901]
 gi|237684548|gb|ACR11812.1| ribonuclease III [Teredinibacter turnerae T7901]
          Length = 229

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 83/228 (36%), Positives = 123/228 (53%), Gaps = 6/228 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           +S  + + L K + Y F++ SLLEKAL+H S+  +   + ERLEFLGD +L  LI+  L+
Sbjct: 4   LSKTKLNQLSKALNYTFSDISLLEKALSHRSVGSN---NNERLEFLGDSLLNFLIAENLY 60

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A+EG+LS    SLV  ET +++A++ DL  F+ +     K       SI AD VE
Sbjct: 61  QRFPKAREGDLSRLRASLVKGETLAELAKDFDLGEFLYLGEGELKSGGFRRASILADAVE 120

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI A+YL+ G++     V  ++ +R  A+      +D KT LQE+        P Y V 
Sbjct: 121 ALIGAIYLESGMDRCRDTVLHWFGERLDAIDLNSSVKDPKTRLQEYLQELRQPLPVYTVE 180

Query: 179 FRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            + G  H P F V  +I            SKR AE++AAA +LK+ G+
Sbjct: 181 SQLGQAHSPEFQVSCDIGRSQGKTVATSSSKRNAEKLAAAAMLKQLGV 228


>gi|293609826|ref|ZP_06692128.1| ribonuclease 3 [Acinetobacter sp. SH024]
 gi|292828278|gb|EFF86641.1| ribonuclease 3 [Acinetobacter sp. SH024]
          Length = 230

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 80/217 (36%), Positives = 117/217 (53%), Gaps = 5/217 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            L  RIGY F    LL+ ALTH S+SH Y  +YERLEFLGD +LG++I+  L++ + +  
Sbjct: 12  RLLSRIGYQFKQLELLQLALTHRSVSHKY--NYERLEFLGDSLLGMIIANYLYHAYPNEN 69

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG L+    +LV  E   ++A +L L+  + +S+   K       SI AD VE++I A+Y
Sbjct: 70  EGRLTRMRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRESILADTVEAIIGAIY 129

Query: 128 LDGG-IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           LD G + +    V K++      ++     +D K+ LQE+  A+    P Y+V    G  
Sbjct: 130 LDSGDLNLLKDIVLKWYIPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDA 189

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
               F V   + GL    G   S+R AEQ AAAE+LK
Sbjct: 190 PHQHFKVECVVDGLPKIYGEGSSRRFAEQAAAAEILK 226


>gi|329850746|ref|ZP_08265591.1| ribonuclease III [Asticcacaulis biprosthecum C19]
 gi|328841061|gb|EGF90632.1| ribonuclease III [Asticcacaulis biprosthecum C19]
          Length = 236

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 92/223 (41%), Positives = 134/223 (60%), Gaps = 3/223 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFN 61
           +   T++ R+GY F ++ LLE ALTH+S++   +     ERLEFLGDR+LGL+I+  L +
Sbjct: 11  IAIETVQDRLGYRFRDKQLLEVALTHASVAEGARRIADNERLEFLGDRVLGLMIAEALMD 70

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +F  A+EGELS RF++LVS E C+ +AR+L L   +R+++   K       +I  D  E+
Sbjct: 71  NFPEAEEGELSRRFHALVSREACADIARQLSLGEAVRLAAGETKSGGRSNPTILGDACEA 130

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFR 180
           L+AA+Y+DGG +         W+Q  L SG   R + K+ LQEWA A     P Y +  R
Sbjct: 131 LMAAVYVDGGYDAVVKSFAPLWQQLLLDSGNASRSNPKSFLQEWAVANAKRPPAYNLIER 190

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            GPDH P FT+ V I GL P      S++ AE+ AA  +++RE
Sbjct: 191 RGPDHAPVFTMEVVIDGLQPQSATGKSRQEAEKTAALALIERE 233


>gi|158423628|ref|YP_001524920.1| ribonuclease III [Azorhizobium caulinodans ORS 571]
 gi|226735365|sp|A8I3B5|RNC_AZOC5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|158330517|dbj|BAF88002.1| ribonuclease III [Azorhizobium caulinodans ORS 571]
          Length = 235

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 96/226 (42%), Positives = 138/226 (61%), Gaps = 3/226 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFN 61
            ++ LE R+G++FA+RS L  ALTH S          SY+RLEFLGD +LG ++S +L+ 
Sbjct: 6   DFAALEARLGHSFADRSHLVLALTHISSVKGQAVRVRSYQRLEFLGDHVLGSVVSHMLYA 65

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F  A+EGELS R   LV  E C++VA+++ L  ++R+     +       +I ADV E+
Sbjct: 66  AFPKAEEGELSRRLAELVREEACAEVAQDMGLGPYLRLGPGEAQSGARQRRAILADVAEA 125

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           ++AA+YLDGG E A   V+++W+ R     +  RD KT LQEWA A+    P Y+   RS
Sbjct: 126 VVAAVYLDGGYEAASALVERFWRGRLEAPRRPLRDPKTVLQEWAQARGLPPPVYRDVERS 185

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           GPDH PRF V V++ GL  A+    SK+ A++ AA+  L REG+ T
Sbjct: 186 GPDHAPRFRVAVDLPGLECAEAEGGSKQTAQKAAASAFLAREGVVT 231


>gi|167040357|ref|YP_001663342.1| ribonuclease III [Thermoanaerobacter sp. X514]
 gi|256750709|ref|ZP_05491594.1| ribonuclease III [Thermoanaerobacter ethanolicus CCSD1]
 gi|300914441|ref|ZP_07131757.1| ribonuclease III [Thermoanaerobacter sp. X561]
 gi|307724323|ref|YP_003904074.1| ribonuclease III [Thermoanaerobacter sp. X513]
 gi|166854597|gb|ABY93006.1| Ribonuclease III [Thermoanaerobacter sp. X514]
 gi|256750292|gb|EEU63311.1| ribonuclease III [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889376|gb|EFK84522.1| ribonuclease III [Thermoanaerobacter sp. X561]
 gi|307581384|gb|ADN54783.1| ribonuclease III [Thermoanaerobacter sp. X513]
          Length = 246

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 75/213 (35%), Positives = 115/213 (53%), Gaps = 5/213 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTL 58
                S LE+RI Y+F +++LL +ALTHSS +H  + S    ERLEFLGD +L L+IS  
Sbjct: 16  KRENLSELEERINYSFKDKNLLIEALTHSSWAHEGKNSKISNERLEFLGDSVLSLVISEY 75

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L+ +    +EG LS     +V   + ++ ARE++L +F+R+             SI AD 
Sbjct: 76  LYKNRKDLEEGSLSKYRAEIVCEPSLARCAREIELGNFLRIGKGEELTGGRERDSILADA 135

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           +E+++AA+YLDGG+EV    + + +K     +  G   RD KT+LQE   +       Y+
Sbjct: 136 MEAILAAVYLDGGLEVVRNVILELFKNIIEEVLEGLIYRDYKTKLQEVVQSMEIGKIIYE 195

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           +    GPDH+  F   V I  +   +G   SK+
Sbjct: 196 LIEEMGPDHNKTFVTQVRIGDVILGKGYGKSKK 228


>gi|322411350|gb|EFY02258.1| ribonuclease III [Streptococcus dysgalactiae subsp. dysgalactiae
           ATCC 27957]
          Length = 230

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 112/226 (49%), Gaps = 9/226 (3%)

Query: 7   STLEKRI----GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58
             LE+ +       F +++LLE A TH+S ++ ++       ERLEFLGD +L L+IS  
Sbjct: 2   KKLEELLAASFDICFEDQTLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIISEY 61

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF  +    EG++S   + +V  E+ +  +R     ++I++     K       +I  D+
Sbjct: 62  LFAKYPKKTEGDMSKLRSMIVREESLAGFSRFCSFDTYIKLGKGEEKSGGRNRDTILGDL 121

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKV 177
            E+ + AL LD G++    F+      +  K   +  +D KT LQE   +K  +  +Y+V
Sbjct: 122 FEAFLGALLLDKGVDEVRRFLKLVMIPQVEKGNFEKVKDYKTCLQELLQSKGDIAIDYQV 181

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               GP H  +F V V ++    ++G+  SK+ AEQ AA   L + 
Sbjct: 182 ISEKGPAHAKQFEVAVFVNEEVLSKGLGKSKKMAEQDAAKNALVQL 227


>gi|288941442|ref|YP_003443682.1| ribonuclease III [Allochromatium vinosum DSM 180]
 gi|288896814|gb|ADC62650.1| ribonuclease III [Allochromatium vinosum DSM 180]
          Length = 225

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 79/225 (35%), Positives = 117/225 (52%), Gaps = 7/225 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+A     L + +G+ F    LL +ALTH S+  S   + ERLEFLGD ++G +I+  L+
Sbjct: 1   MNA-DPRRLAQALGHRFTREELLIQALTHRSVGSS---NNERLEFLGDALIGFVIAEALW 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EG LS    SLV  E+ +++AR+L L   +R+ +   +       SI AD +E
Sbjct: 57  ERFPKADEGTLSRMRASLVKRESLARLARDLKLGDSLRLGAGELRTGGHARDSILADALE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +++ A+YLD G E   T V + +  R     + +  +D KT LQEW  +     PEY V 
Sbjct: 117 AVLGAVYLDAGFERTRTVVLELFAARLEQTDAERAGKDPKTRLQEWLQSYKRPLPEYLVL 176

Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKR 222
              G  HD  F V  ++       +G   S+R AEQ AA  +L+R
Sbjct: 177 SIDGDQHDQTFIVSCQLQDADVTTRGTGTSRRRAEQAAAESMLER 221


>gi|315917454|ref|ZP_07913694.1| ribonuclease III [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691329|gb|EFS28164.1| ribonuclease III [Fusobacterium gonidiaformans ATCC 25563]
          Length = 235

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 72/233 (30%), Positives = 118/233 (50%), Gaps = 9/233 (3%)

Query: 1   MSAL--RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLL 54
           MS++      LE RI Y F +++LL+ AL H S  + ++     + E+LE LGD +LGL+
Sbjct: 1   MSSVSKNLVDLEHRINYYFNDKNLLKNALIHRSFGNEHKHYKNINNEKLELLGDAVLGLV 60

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
           ++  L+  +   KEG L+   +  VS    + ++R+L +  ++ +S            SI
Sbjct: 61  VAEYLYQKYPEEKEGVLAKIKSMAVSEPVLASISRKLRIGEYLLLSKGEMVTGGRDRNSI 120

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVT 172
             DV E+++ A+YLD G   A  +V  + K        F    D KT LQE+   K+   
Sbjct: 121 LGDVFEAILGAIYLDSGFFAAKEYVLFHLKDMIDHIDDFEEILDFKTILQEYCQKKYRDI 180

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           P+Y +    GPDH   F + V+I     A+    +K+ AEQ+AA ++ K  G+
Sbjct: 181 PKYTLVGEEGPDHRKLFEMQVQIQNN-IAKAKGTNKKVAEQMAAKQLCKELGV 232


>gi|217970713|ref|YP_002355947.1| ribonuclease III [Thauera sp. MZ1T]
 gi|217508040|gb|ACK55051.1| ribonuclease III [Thauera sp. MZ1T]
          Length = 222

 Score =  249 bits (638), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 83/216 (38%), Positives = 113/216 (52%), Gaps = 6/216 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            L+ R+G+AF++  LL++ALTH S     Q + ER EFLGD +L  ++S  LF  F   +
Sbjct: 4   RLQARLGHAFSDVRLLQEALTHRSFG---QPNNERFEFLGDAVLDCVVSIALFGRFGELR 60

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EGELS    SLV  +T  ++A EL+L   +R+     K   S   SI AD +E+L AA+Y
Sbjct: 61  EGELSRVRASLVRQDTLHRLALELELGDCLRLGEGELKSGGSRRPSILADALEALFAAVY 120

Query: 128 LDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           LD G E A   +D+ +     +    K  +D KT LQEW  A+    P Y +    G  H
Sbjct: 121 LDAGFEAAKGVIDRLYAPLIAEVDPCKPSKDPKTALQEWLQARRIPVPSYTMVEIVGEAH 180

Query: 186 DPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVL 220
              F V  EI  LA    G   S+R AEQ +A   L
Sbjct: 181 AQEFEVACEIPKLAVRTLGRGPSRRIAEQQSAELAL 216


>gi|260890105|ref|ZP_05901368.1| hypothetical protein GCWU000323_01267 [Leptotrichia hofstadii
           F0254]
 gi|260860128|gb|EEX74628.1| ribonuclease III [Leptotrichia hofstadii F0254]
          Length = 243

 Score =  249 bits (638), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 111/223 (49%), Gaps = 6/223 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNH 62
             L ++IGY F N   LE+ALTH S S+  ++    + E+LEFLGD +L L+ +  ++  
Sbjct: 10  KELMQKIGYEFKNEEYLEEALTHRSYSNETEKDRRFNNEKLEFLGDAVLNLITTEYIYEL 69

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           ++   EGEL+   + ++S    S +A +++L  ++ +S+           SI  D  E+L
Sbjct: 70  YEKKTEGELAKLKSQIISEPVFSTIASDIELGEYLYLSNGEIMSGGRNRRSILGDAFEAL 129

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFR 180
           I A++ D     A     K    +  K  +     D KT LQE+   K+   PEYK+   
Sbjct: 130 IGAIFKDSDYYTAKNVALKLLLGKINKLEEIEGTGDYKTVLQEFVQGKYRKMPEYKLLNT 189

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            GPDHD  F + V  +      G+  SK+ AE+ AA E L + 
Sbjct: 190 KGPDHDKVFEISVSWNDKIYGVGIGKSKKEAEKHAAKEALVKL 232


>gi|110834492|ref|YP_693351.1| ribonuclease III [Alcanivorax borkumensis SK2]
 gi|123345468|sp|Q0VP19|RNC_ALCBS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|110647603|emb|CAL17079.1| ribonuclease III [Alcanivorax borkumensis SK2]
          Length = 228

 Score =  249 bits (638), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 85/220 (38%), Positives = 112/220 (50%), Gaps = 5/220 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             + L  R+GY F + SLLE ALTH S+S     +YERLEFLGD  LG +IS  LF  F 
Sbjct: 4   DLNRLMARLGYQFQDLSLLELALTHRSVSRH--RNYERLEFLGDAQLGQIISVALFEQFP 61

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            A EG+L+    SLV  +T + VAREL L  ++ +     K       SI AD +ES+I 
Sbjct: 62  EAAEGQLTRMRASLVRGQTLALVARELGLGEYLVLGGGELKSGGFRRDSILADALESIIG 121

Query: 125 ALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+ LDGG       V  ++  R  A+     ++DAKT LQEW  A+    P Y+VT   G
Sbjct: 122 AMLLDGGEPRCREVVLAWFAPRLDAISPQSAQKDAKTRLQEWLQARKFELPTYEVTQVEG 181

Query: 183 PDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLK 221
                 F V   +            S+R AEQ AA+  L+
Sbjct: 182 LAPKQTFDVQCSLDNVQQIFIAQGASRRKAEQEAASLALE 221


>gi|85705112|ref|ZP_01036212.1| Ribonuclease III [Roseovarius sp. 217]
 gi|85670434|gb|EAQ25295.1| Ribonuclease III [Roseovarius sp. 217]
          Length = 238

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 86/221 (38%), Positives = 124/221 (56%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           +      + R+G+ F    LL +ALTHSS+    ++  +RLEFLGDR+LGL++S  L + 
Sbjct: 15  SAEIKAFQTRLGHEFTATELLIRALTHSSMVTPNRDDNQRLEFLGDRVLGLVMSEALLSQ 74

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
              A EG+L+ RFN+LV  E C+ VARE+DL + +++             ++  D +E++
Sbjct: 75  DKGATEGQLAPRFNALVRKEACADVAREIDLGAVLKLGRSEMLSGGRRKEALLGDAMEAV 134

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           IAA+YLD G + A   V + W  R  +     RDAKT LQEWA A+    P+Y    R G
Sbjct: 135 IAAIYLDAGFDAARAVVLRLWGARIGEVKDDARDAKTALQEWAQARGLPPPDYIELRRKG 194

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           PDH P FT+  ++     A+    SKR AEQ AA  +L R 
Sbjct: 195 PDHAPVFTISAQLKSGESAEATAGSKRQAEQTAAKALLARL 235


>gi|296273889|ref|YP_003656520.1| ribonuclease III [Arcobacter nitrofigilis DSM 7299]
 gi|296098063|gb|ADG94013.1| ribonuclease III [Arcobacter nitrofigilis DSM 7299]
          Length = 223

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 74/221 (33%), Positives = 113/221 (51%), Gaps = 4/221 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y  LEK + Y F N+ L+ +ALTH S    Y  + ERLEFLGD +L L++   L+  F 
Sbjct: 3   DYVNLEKCLDYQFKNKDLIVEALTHKSFKKPY--NNERLEFLGDAVLNLIVGEYLYKKFP 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            + EG+LS    SLV+    +++A E+ L  +I +S    ++      SI +D  ES++ 
Sbjct: 61  QSNEGDLSKIRASLVNETGFTKLANEIKLGDYIYLSIAEERNKGRTKASILSDAFESIMG 120

Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YL+ G+E     +    ++    +       D KT LQE   A+FG  P+YK+    G
Sbjct: 121 AIYLESGLETLKPIILTLLEKSYDKINLDVLFSDYKTALQEITQAEFGSIPDYKIEGSYG 180

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           PDH   F V + I+     Q +  SK+ A+Q  A   L + 
Sbjct: 181 PDHKKEFEVSIWINNQCYGQAIGKSKKLAQQAVAKIALDKL 221


>gi|257452427|ref|ZP_05617726.1| ribonuclease III [Fusobacterium sp. 3_1_5R]
          Length = 232

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 116/231 (50%), Gaps = 8/231 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           MS      LE RI Y F +++LL+ AL H S  + ++     + E+LE LGD +LGL+++
Sbjct: 1   MSK-NLVDLEHRINYYFNDKNLLKNALIHRSFGNEHKHYKNINNEKLELLGDAVLGLVVA 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +   KEG L+   +  VS    + ++R+L +  ++ +S            SI  
Sbjct: 60  EYLYQKYPEEKEGVLAKIKSMAVSEPVLASISRKLRIGEYLLLSKGEMVTGGRDRNSILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPE 174
           DV E+++ A+YLD G   A  +V  + K        F    D KT LQE+   K+   P+
Sbjct: 120 DVFEAILGAIYLDSGFFAAKEYVLFHLKDMIDHIDDFEEILDFKTILQEYCQKKYRDIPK 179

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           Y +    GPDH   F + V+I     A+    +K+ AEQ+AA ++ K  G+
Sbjct: 180 YTLVGEEGPDHRKLFEMQVQIQNN-IAKAKGTNKKIAEQMAAKQLCKELGV 229


>gi|83593187|ref|YP_426939.1| RNAse III [Rhodospirillum rubrum ATCC 11170]
 gi|83576101|gb|ABC22652.1| RNAse III [Rhodospirillum rubrum ATCC 11170]
          Length = 221

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 84/221 (38%), Positives = 120/221 (54%), Gaps = 2/221 (0%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           A   + L+  + + F + +LL +ALTH S     + SYERLEFLGDR+LGL+++ +L+  
Sbjct: 2   ARDLNALQIALDHRFTDPALLARALTHRS--REGRPSYERLEFLGDRVLGLVVAEMLYAR 59

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F +  EG L+ R  SLV  +T ++VA+ + L   + +S    +    F  S+  DV E++
Sbjct: 60  FPTEDEGALARRHASLVRQDTVARVAQSVGLGELMELSRGEEELGGQFNPSLLCDVCEAV 119

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           + AL+LDGG   A  FV+  W     +     +DAKT LQEWA  +    P Y V  R G
Sbjct: 120 LGALHLDGGYAKAQRFVEARWAPLMAEDLTPPKDAKTALQEWAQGRGLPLPTYAVEGRDG 179

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           P H P FTV V +        +  SKR AEQ AA  +L R 
Sbjct: 180 PPHKPMFTVSVTVKDNGSESALGASKRLAEQAAAQRLLDRL 220


>gi|167630237|ref|YP_001680736.1| ribonuclease iii [Heliobacterium modesticaldum Ice1]
 gi|226735377|sp|B0TGW4|RNC_HELMI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|167592977|gb|ABZ84725.1| ribonuclease iii [Heliobacterium modesticaldum Ice1]
          Length = 235

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 76/220 (34%), Positives = 109/220 (49%), Gaps = 5/220 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62
           + L +RIG A  + + LE ALTH S  +       E  +RLEFLGD +LGL+I   LF  
Sbjct: 9   AELARRIGIASEDLATLEMALTHPSFVYENPQAPPEHNQRLEFLGDAVLGLVIGEQLFVR 68

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           + +  EGELS R  ++V     +  AR L L +++++             SI AD +E++
Sbjct: 69  YPTWTEGELSRRRAAVVCEANLADGARRLQLGAWLKLGRGEEASGGREKPSILADALEAV 128

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           I A++L GGIE A  F+   +      +      D KT  QEW          Y +   S
Sbjct: 129 IGAIFLSGGIEAARRFIVDLFGDALANAQNLVSGDNKTAFQEWVQRTGPADIRYCIVDES 188

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           GPDHD RF   V ++G   A G   +K+ AEQ AA   ++
Sbjct: 189 GPDHDKRFVAAVMVNGTVIADGQGRTKKEAEQQAAGRAMR 228


>gi|298381809|ref|ZP_06991408.1| LOW QUALITY PROTEIN: ribonuclease III [Escherichia coli FVEC1302]
 gi|298279251|gb|EFI20765.1| LOW QUALITY PROTEIN: ribonuclease III [Escherichia coli FVEC1302]
          Length = 215

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 71/205 (34%), Positives = 110/205 (53%), Gaps = 6/205 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L++++GY F ++ LL++ALTH S S  +    ERLEFLGD IL  +I+  L++ F    E
Sbjct: 1   LQRKLGYTFNHQELLQQALTHRSASSKH---NERLEFLGDSILSYVIANALYHRFPRVDE 57

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G++S    +LV   T +++ARE +L   +R+     K       SI AD VE+LI  ++L
Sbjct: 58  GDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRRESILADTVEALIGGVFL 117

Query: 129 DGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V    G  HD
Sbjct: 118 DSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPTYLVVQVRGEAHD 177

Query: 187 PRFTVVVEISGL-APAQGMDCSKRA 210
             FT+  ++SGL  P  G   S+R 
Sbjct: 178 QEFTIHCQVSGLSEPVVGTGSSRRK 202


>gi|84684005|ref|ZP_01011907.1| Ribonuclease III [Maritimibacter alkaliphilus HTCC2654]
 gi|84667758|gb|EAQ14226.1| Ribonuclease III [Rhodobacterales bacterium HTCC2654]
          Length = 226

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 86/222 (38%), Positives = 124/222 (55%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           +        RIG+ F    LL +ALTH SIS   +   +RLEFLGDR+LGL+++  +   
Sbjct: 4   SADLKGFANRIGHDFKRPELLIRALTHGSISSDTRPDNQRLEFLGDRVLGLVMAEAMLAA 63

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
              A EG+L+ RFN+LV  E C+ VAR+++L + +++    +        ++  D +E++
Sbjct: 64  DKEASEGQLAPRFNALVRKEACADVARQVELGAVLKLGRSEQMSGGRRKQALLGDAMEAV 123

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           IAA+YLD G E A   + + W  R     +  RDAKT LQEWA A+    P Y    R G
Sbjct: 124 IAAVYLDAGFEAAREMIVRLWGDRIGAVEEDARDAKTALQEWAQARKMQPPTYVEIARDG 183

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           PDH P FT+  ++     A+    SKRAAEQ AA  +L+R G
Sbjct: 184 PDHAPEFTIEAQLENGEAARAKANSKRAAEQDAARALLERLG 225


>gi|114331755|ref|YP_747977.1| ribonuclease III [Nitrosomonas eutropha C91]
 gi|122313494|sp|Q0AF70|RNC_NITEC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|114308769|gb|ABI60012.1| RNAse III [Nitrosomonas eutropha C91]
          Length = 245

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 72/220 (32%), Positives = 103/220 (46%), Gaps = 6/220 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y+   +++GY F    LL++ALTH S+      + ERLEFLGD +L   +STLLF  F 
Sbjct: 23  DYTVFSQKLGYTFKQPDLLQEALTHRSLGFP---NNERLEFLGDSVLNCAVSTLLFKRFL 79

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+L+    + V+ +   Q+A  L +   I +    RK       SI A+ +E++I 
Sbjct: 80  LLPEGDLTRLRANFVNQDALHQLASALGIGELILLGDGERKSGGHQRPSILANAMEAIIG 139

Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YL+ G E     +   +      L    F +D KT LQE+  ++    PEY      G
Sbjct: 140 AIYLESGFEKVDQVIVALYDPLLNQLDPDLFGKDPKTLLQEYLQSRKVDLPEYSTLLTRG 199

Query: 183 PDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221
             H   F V   I   A    G   S+R AEQ AA    K
Sbjct: 200 DAHAQVFHVECVIPEFAIRTSGEGTSRRRAEQEAARRAYK 239


>gi|149194957|ref|ZP_01872050.1| ribonuclease III [Caminibacter mediatlanticus TB-2]
 gi|149134878|gb|EDM23361.1| ribonuclease III [Caminibacter mediatlanticus TB-2]
          Length = 227

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 76/219 (34%), Positives = 119/219 (54%), Gaps = 4/219 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             L+K +GY F +  L+ +ALTH S S  +  + ERLE+LGD +L L++   L+N F  A
Sbjct: 4   EELQKSLGYQFKDEKLITEALTHRSYSKEF--NNERLEYLGDAVLDLIVGEYLYNLFPKA 61

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +EG LS    +LV+ E+  ++A+ L+L  ++ +S     +      SI +   E+LI AL
Sbjct: 62  EEGILSKLRAALVNEESFDKLAKRLNLGKYLFLSPAEENNKGREKPSILSSAFEALIGAL 121

Query: 127 YLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YL+ G + A     K  K+    +   +  +D KT LQE   A FGV PEY++   +GPD
Sbjct: 122 YLEAGFDKAKEIALKLLKEEYPKITPEELLKDYKTTLQEITQAHFGVVPEYRLLSATGPD 181

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           H   F + V I+    A+    SK+AA+Q  A   +++ 
Sbjct: 182 HKKEFEIGVFINDREYARAKGRSKKAAQQEGARLTIEKL 220


>gi|238916990|ref|YP_002930507.1| ribonuclease III [Eubacterium eligens ATCC 27750]
 gi|238872350|gb|ACR72060.1| ribonuclease III [Eubacterium eligens ATCC 27750]
          Length = 237

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 112/224 (50%), Gaps = 6/224 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M     S   + IGY F + SLLE ALTHSS ++  ++      ER+EFLGD +L L  S
Sbjct: 1   MHNKNLSVFMQTIGYDFKDISLLEVALTHSSYANEQKKGNCCDNERMEFLGDAVLELSSS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             ++ +     EG+++    S+V   T +  AR + L +FIR+             SI +
Sbjct: 61  DYIYKNHAEMAEGKMTRLRASIVCEPTLALCARAIKLDTFIRLGKGEELTGGRSRDSIVS 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D  E++I A+YLDGG   A  FV+K+     L + K   D+KT LQE          +Y+
Sbjct: 121 DACEAVIGAIYLDGGFANAKEFVNKFIL-NDLDNKKLFFDSKTILQEVIQGLGKE-VDYE 178

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                GP+H+ +F V   + GL   +G   +K++A Q AA   L
Sbjct: 179 FIGEEGPEHNKQFVVAAVVDGLFNIKGTGHTKKSASQNAAYAAL 222


>gi|51245097|ref|YP_064981.1| ribonuclease III [Desulfotalea psychrophila LSv54]
 gi|81642476|sp|Q6ANV0|RNC_DESPS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|50876134|emb|CAG35974.1| related to ribonuclease III [Desulfotalea psychrophila LSv54]
          Length = 241

 Score =  249 bits (636), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 113/226 (50%), Gaps = 5/226 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTL 58
           +  +++  EK+I Y F +  LL+KAL HSS +       ++ ERLEF+GD +L L++   
Sbjct: 12  NRQKHAEFEKKINYKFIDLRLLQKALIHSSYAFEQAQAGKNNERLEFVGDAVLDLVVGNA 71

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L+  F   +EGEL+    +LV+    + +AR+++L  F+ +            +SI +  
Sbjct: 72  LYRRFPEMREGELTRLRAALVNEGHLATMARKINLGYFLCLGKGEDNSKGREKSSILSCA 131

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYK 176
            E++I A++ DGG +     V++++       K      DAK+ LQE    K    P Y+
Sbjct: 132 YEAVIGAIFQDGGYDAVAALVERFFLPVIDRRKEDLLLADAKSRLQEILQEKHNEGPSYR 191

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +    GP H  RFT+ V         G   SK+ AEQ  AA  +K+
Sbjct: 192 LDNEEGPSHKKRFTISVLFRDEVLGTGEAGSKKEAEQRGAALAIKK 237


>gi|257466297|ref|ZP_05630608.1| ribonuclease III [Fusobacterium gonidiaformans ATCC 25563]
          Length = 232

 Score =  249 bits (636), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 116/231 (50%), Gaps = 8/231 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           MS      LE RI Y F +++LL+ AL H S  + ++     + E+LE LGD +LGL+++
Sbjct: 1   MSK-NLVDLEHRINYYFNDKNLLKNALIHRSFGNEHKHYKNINNEKLELLGDAVLGLVVA 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +   KEG L+   +  VS    + ++R+L +  ++ +S            SI  
Sbjct: 60  EYLYQKYPEEKEGVLAKIKSMAVSEPVLASISRKLRIGEYLLLSKGEMVTGGRDRNSILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPE 174
           DV E+++ A+YLD G   A  +V  + K        F    D KT LQE+   K+   P+
Sbjct: 120 DVFEAILGAIYLDSGFFAAKEYVLFHLKDMIDHIDDFEEILDFKTILQEYCQKKYRDIPK 179

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           Y +    GPDH   F + V+I     A+    +K+ AEQ+AA ++ K  G+
Sbjct: 180 YTLVGEEGPDHRKLFEMQVQIQNN-IAKAKGTNKKVAEQMAAKQLCKELGV 229


>gi|260551498|ref|ZP_05825682.1| dsRNA-specific ribonuclease [Acinetobacter sp. RUH2624]
 gi|260405492|gb|EEW98985.1| dsRNA-specific ribonuclease [Acinetobacter sp. RUH2624]
          Length = 230

 Score =  249 bits (636), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 80/228 (35%), Positives = 119/228 (52%), Gaps = 9/228 (3%)

Query: 1   MSALRYS----TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIS 56
           M+  ++      L  RIGY F    LL+ ALTH S+SH Y  +YERLEFLGD +LG++I+
Sbjct: 1   MTKHQFKLSDPRLLSRIGYQFKQPELLQLALTHRSVSHKY--NYERLEFLGDSLLGMIIA 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L++ +    EG L+    +LV  E   ++A +L L+  + +S+   K       SI A
Sbjct: 59  NYLYHAYPHENEGRLTRMRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRESILA 118

Query: 117 DVVESLIAALYLDGG-IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTP 173
           D VE++I A+YLD   + +    V K++      ++     +D K+ LQE+  A+    P
Sbjct: 119 DTVEAIIGAIYLDSSDLNLLKDIVLKWYVPYLDHIEPTDQLKDPKSRLQEYLQARKKPLP 178

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            Y+V    G      F V   + GL    G   S+R AEQ AAAE+LK
Sbjct: 179 VYEVVDIQGDAPHQHFKVECLVDGLPKIYGEGSSRRFAEQAAAAEILK 226


>gi|50122200|ref|YP_051367.1| ribonuclease III [Pectobacterium atrosepticum SCRI1043]
 gi|81644286|sp|Q6D219|RNC_ERWCT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|49612726|emb|CAG76176.1| ribonuclease III [Pectobacterium atrosepticum SCRI1043]
          Length = 226

 Score =  249 bits (636), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 70/213 (32%), Positives = 110/213 (51%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F    LL +ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPILINRLQRKLGYTFQQYELLLQALTHRSASSKH---NERLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  DRFPKVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I      +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGIFLDSDILNIERLILNWYQTRLDEISPGDKQKDPKTRLQEFLQGRHLPLPTYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRA 210
              G  HD  FT+  ++SG + +  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGFSESVIGTGSSRRK 210


>gi|298242449|ref|ZP_06966256.1| ribonuclease III [Ktedonobacter racemifer DSM 44963]
 gi|297555503|gb|EFH89367.1| ribonuclease III [Ktedonobacter racemifer DSM 44963]
          Length = 227

 Score =  249 bits (636), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 73/221 (33%), Positives = 115/221 (52%), Gaps = 8/221 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61
           +  LE  +   F N +LL  ALTH S     +   + S ERLEFLGD IL L+ +  L+ 
Sbjct: 2   HEELEAILDIQFHNPNLLTLALTHRSYIYEAAGEGRSSNERLEFLGDSILALISADFLYR 61

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F    EGEL+     LV  ET +  AR+++L++F+ +    +         + A   E+
Sbjct: 62  TFPDLAEGELTDARAVLVRTETLANFARDINLSNFLLMGKGEQHSGGGQR--VLASAFEA 119

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           L+ A+YLD G++   TF+ K  +  A  +   +  +D K+  QE A A  G+TP Y++  
Sbjct: 120 LLGAIYLDQGLDAVQTFLLKRLEPLAHTIVRNRLFKDNKSLFQELAQAHDGITPSYRLVN 179

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           + GP H+  FT+ V +      +G   +K++AEQ AA + L
Sbjct: 180 QEGPSHNREFTIEVLLGEQVAGRGQGRNKQSAEQEAARQAL 220


>gi|213419257|ref|ZP_03352323.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
          Length = 213

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 67/197 (34%), Positives = 106/197 (53%), Gaps = 5/197 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 20  MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKH---NERLEFLGDSILSFVIANALY 76

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 77  HRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELKSGGFRRESILADTVE 136

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  ++K R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 137 ALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 196

Query: 179 FRSGPDHDPRFTVVVEI 195
              G  HD  FT+  ++
Sbjct: 197 QVRGEAHDQEFTIHCQV 213


>gi|237748853|ref|ZP_04579333.1| ribonuclease III [Oxalobacter formigenes OXCC13]
 gi|229380215|gb|EEO30306.1| ribonuclease III [Oxalobacter formigenes OXCC13]
          Length = 277

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 74/220 (33%), Positives = 111/220 (50%), Gaps = 6/220 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  + L++RIGY+F    LL+ ALTH S S  +    ERLEFLGD +L  + +  L+  +
Sbjct: 12  MNVNVLQERIGYSFRQIDLLQTALTHRSFSSHH---NERLEFLGDSLLNCVTAINLYERY 68

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG LS   +SLV  +   ++A++LD++SF+R+     K       SI AD +E+L 
Sbjct: 69  VELNEGNLSRLRSSLVRQQALYEIAQKLDMSSFLRLGEGELKAGGFKRPSILADAMEALF 128

Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LD   E     + + +      L    F +DAKT+LQE+        PEY+V    
Sbjct: 129 GAIFLDSDFETVRRVITQLFTDMMKGLDPETFGKDAKTQLQEYLQGHKLALPEYQVVATH 188

Query: 182 GPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVL 220
           G  H+  F +   I        G   S+RA EQ AA + L
Sbjct: 189 GAAHNQEFEIECTIGKFGIHVFGTGSSRRAGEQEAAQKAL 228


>gi|203284601|ref|YP_002222341.1| ribonuclease III [Borrelia duttonii Ly]
 gi|203288135|ref|YP_002223150.1| ribonuclease III [Borrelia recurrentis A1]
 gi|201084044|gb|ACH93635.1| ribonuclease III [Borrelia duttonii Ly]
 gi|201085355|gb|ACH94929.1| ribonuclease III [Borrelia recurrentis A1]
          Length = 243

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 73/225 (32%), Positives = 121/225 (53%), Gaps = 5/225 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLL 59
             + +     +   F +  LL  +L+HSS ++ + +   + ERLEFLGD +L L+I+  L
Sbjct: 13  KQKLNEFLMGLHIDFNDIYLLNMSLSHSSYANEFDQKYANNERLEFLGDSVLNLIITDYL 72

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  +    EGELS   + +VS ++ S +AREL+L ++I +      +       I AD +
Sbjct: 73  YKFYPDKSEGELSKARSYIVSEDSLSSIARELNLGNYILLGRGEENNDGRNKKGILADAI 132

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E+ + ALYLDGG   A TFV + ++   R + +    +D K+ LQE+   K+ ++P YK+
Sbjct: 133 EAFVGALYLDGGFSKASTFVVELFEVHIRLMFNRGDFKDYKSLLQEYVQKKYKISPSYKL 192

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
               GPDH+  F V + ++    + G   SK+ AE +AA   LK 
Sbjct: 193 AKELGPDHNKIFCVELYVNDKFVSNGKGKSKKEAEMIAAEMALKN 237


>gi|169795096|ref|YP_001712889.1| ribonuclease III [Acinetobacter baumannii AYE]
 gi|239501066|ref|ZP_04660376.1| ribonuclease III [Acinetobacter baumannii AB900]
 gi|260556582|ref|ZP_05828800.1| ribonuclease III [Acinetobacter baumannii ATCC 19606]
 gi|301345824|ref|ZP_07226565.1| ribonuclease III [Acinetobacter baumannii AB056]
 gi|301512403|ref|ZP_07237640.1| ribonuclease III [Acinetobacter baumannii AB058]
 gi|301594764|ref|ZP_07239772.1| ribonuclease III [Acinetobacter baumannii AB059]
 gi|332851055|ref|ZP_08433164.1| ribonuclease III [Acinetobacter baumannii 6013150]
 gi|332869696|ref|ZP_08438884.1| ribonuclease III [Acinetobacter baumannii 6013113]
 gi|332875945|ref|ZP_08443731.1| ribonuclease III [Acinetobacter baumannii 6014059]
 gi|238685526|sp|A3M7P2|RNC_ACIBT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|238688097|sp|B0VCU0|RNC_ACIBY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|169148023|emb|CAM85886.1| ribonuclease III, ds RNA [Acinetobacter baumannii AYE]
 gi|193078016|gb|ABO12936.2| ribonuclease III [Acinetobacter baumannii ATCC 17978]
 gi|260409841|gb|EEX03141.1| ribonuclease III [Acinetobacter baumannii ATCC 19606]
 gi|332730219|gb|EGJ61544.1| ribonuclease III [Acinetobacter baumannii 6013150]
 gi|332732598|gb|EGJ63831.1| ribonuclease III [Acinetobacter baumannii 6013113]
 gi|332735811|gb|EGJ66852.1| ribonuclease III [Acinetobacter baumannii 6014059]
          Length = 230

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 80/228 (35%), Positives = 120/228 (52%), Gaps = 9/228 (3%)

Query: 1   MSALRYS----TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIS 56
           M+  ++      L  RIGY F    LL+ ALTH S+SH Y  +YERLEFLGD +LG++I+
Sbjct: 1   MTKHQFKLSDPRLLSRIGYQFKQPELLQLALTHRSVSHKY--NYERLEFLGDSLLGMIIA 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L++ +    EG L+    +LV  E   ++A +L L+  + +S+   K       SI A
Sbjct: 59  NYLYHAYPHENEGRLTRMRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRESILA 118

Query: 117 DVVESLIAALYLDGG-IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTP 173
           D VE++I A+YLD   + +    V K++      ++     +D K+ LQE+  A+    P
Sbjct: 119 DTVEAIIGAIYLDSSDLNLLKDIVLKWYTPYLDHIEPTDQLKDPKSRLQEYLQARKKPLP 178

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            Y+V    G      F V   + GL+   G   S+R AEQ AAAE+LK
Sbjct: 179 VYEVVDIQGDAPHQHFKVECLVDGLSKIHGEGSSRRFAEQAAAAEILK 226


>gi|50085655|ref|YP_047165.1| ribonuclease III [Acinetobacter sp. ADP1]
 gi|81392620|sp|Q6F9C2|RNC_ACIAD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|49531631|emb|CAG69343.1| ribonuclease III, ds RNA [Acinetobacter sp. ADP1]
          Length = 230

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 79/217 (36%), Positives = 117/217 (53%), Gaps = 5/217 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            L+ RIGY F    LL+ ALTH S+SH Y  +YERLEFLGD +LG++I+  L+  +    
Sbjct: 12  RLQSRIGYEFKQLELLQLALTHRSVSHKY--NYERLEFLGDSLLGMIIANYLYQAYPHEN 69

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG L+    +LV  E   ++A +L L+  + +S+   K       SI AD VE++I A+Y
Sbjct: 70  EGRLTRMRATLVRQEALGKIANDLKLSRCLILSTGELKSGGHHRESILADTVEAIIGAIY 129

Query: 128 LDGG-IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           +D   + +    V K++      ++     +D K+ LQE+  A+    P Y+V    G  
Sbjct: 130 VDSNDLNLLKNIVLKWYIPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDA 189

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            +  F VV  + GL    G   S+R AEQ AAAE+LK
Sbjct: 190 PNQHFKVVCLVEGLPRVMGEGSSRRFAEQTAAAEILK 226


>gi|192359963|ref|YP_001983041.1| ribonuclease III [Cellvibrio japonicus Ueda107]
 gi|190686128|gb|ACE83806.1| ribonuclease III [Cellvibrio japonicus Ueda107]
          Length = 225

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 80/224 (35%), Positives = 119/224 (53%), Gaps = 6/224 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M  L+Y  LE+R+GY+F ++  L+ ALTH S       + ERLEFLGD IL  LI   LF
Sbjct: 1   MINLKYQRLEQRLGYSFNDQRQLQLALTHRS---HGASNNERLEFLGDSILNFLIGEALF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
              D A+EG++S   + LV  +T +++ARE +L   + +     K       SI AD VE
Sbjct: 58  LRLDEAREGQMSRLRSQLVRGDTLAELAREFELGECLVLGEGELKSGGHRRDSILADAVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YL+ G++     V  ++  R  A+      +D K+ LQE+  A+    PEY+V 
Sbjct: 118 AIIGAIYLESGLDTCRERVLAWYGDRLDAISLDTSAKDPKSRLQEYLQAQRQPLPEYRVV 177

Query: 179 FRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLK 221
              G  H   FT+   ++      Q    S+R AE+ AAA +LK
Sbjct: 178 EVGGEGHAQVFTIECHVAIAKQSTQAQASSRREAEKQAAAAMLK 221


>gi|261820519|ref|YP_003258625.1| ribonuclease III [Pectobacterium wasabiae WPP163]
 gi|261604532|gb|ACX87018.1| ribonuclease III [Pectobacterium wasabiae WPP163]
          Length = 226

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 70/213 (32%), Positives = 110/213 (51%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F    LL +ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPILINRLQRKLGYTFQQYELLLQALTHRSASSKH---NERLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPKVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I      +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGIFLDSDILNIERLILNWYQTRLDEISPGDKQKDPKTRLQEFLQGRHLPLPTYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRA 210
              G  HD  FT+  ++SG + +  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGFSESVIGTGSSRRK 210


>gi|303231076|ref|ZP_07317816.1| ribonuclease III [Veillonella atypica ACS-049-V-Sch6]
 gi|302514207|gb|EFL56209.1| ribonuclease III [Veillonella atypica ACS-049-V-Sch6]
          Length = 247

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 104/225 (46%), Gaps = 6/225 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60
               L  R+     + S+L+ A TH+S ++ ++       +RLEFLGD +L L+I   LF
Sbjct: 19  SLHELVSRLHIPNIDISILDCAFTHTSYANEHKSKHIHHNQRLEFLGDAVLDLIIGEYLF 78

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             +    EG L+    + V  ++ + V+R L L  ++ +    +    S   SI AD  E
Sbjct: 79  TTYPDMSEGNLTKIKAATVCEDSLATVSRTLHLGDYLLLGHGEKSSGGSDRKSILADTFE 138

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           SLI ALY+    +    FV         ++  GK  +D KT LQE+          Y + 
Sbjct: 139 SLIGALYITTDYKTVMDFVLHQLAPNLKQALEGKRGKDYKTLLQEFVQRDGDKHIVYSLI 198

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             SGPDH   F + V I G+    G   SK+ AEQ AA   L+R 
Sbjct: 199 SESGPDHAKTFMMEVSIDGITYEAGTGKSKKIAEQHAAQLTLERL 243


>gi|152995275|ref|YP_001340110.1| ribonuclease III [Marinomonas sp. MWYL1]
 gi|189043327|sp|A6VUP6|RNC_MARMS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|150836199|gb|ABR70175.1| Ribonuclease III [Marinomonas sp. MWYL1]
          Length = 227

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 87/217 (40%), Positives = 120/217 (55%), Gaps = 7/217 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           MS+L Y  L +RIGY FA+  LLE ALTH S      ++ ERLEFLGD IL  +I+  LF
Sbjct: 1   MSSL-YQKLSRRIGYFFADLGLLELALTHRSFG---GKNNERLEFLGDSILNYVIAEDLF 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F  AKEGELS    SLV  +T +++ARE +L  ++++ +   K       SI AD VE
Sbjct: 57  HRFPKAKEGELSRLRASLVKGDTLAELAREFELGDYLKLGAGELKSGGFRRDSILADTVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVT 178
            +I A+YLD G++V    +  ++K+R   +      +DAKT LQE+  A+    P+Y V 
Sbjct: 117 GIIGAMYLDAGMDVCRQHILAWYKERLDATSLKIVTKDAKTRLQEFLQARKHALPQYDVV 176

Query: 179 FRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQV 214
              G  HD  F V   I       +G   S+R AEQ 
Sbjct: 177 NIVGEPHDQTFYVHCHIELCEEFIEGKGNSRRIAEQN 213


>gi|111073612|emb|CAL29457.1| Ribonuclease III [Wolbachia endosymbiont of Onchocerca volvulus]
          Length = 243

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 82/226 (36%), Positives = 122/226 (53%), Gaps = 5/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M  L   T+ + I Y F N S+L++ALTH S++        E+YERLEFLGD IL +++S
Sbjct: 9   MQNLN-DTISEIINYRFKNYSILKEALTHPSLNKRNSKNQIENYERLEFLGDSILNMVVS 67

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
           T+LF  F   KEG L+ R   LV   T + VA+ + L  FI + +  R +   +      
Sbjct: 68  TILFKLFPKEKEGRLAKRKTDLVCGSTIANVAKVIKLGDFIIMDNSERCNGGKYNLKNLE 127

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           + +E+LI A+Y+DGG      FV +YW++ A       +D KT LQEW        P+Y+
Sbjct: 128 NALEALIGAIYIDGGFRNVERFVTQYWEKLAKYMLNPPQDPKTSLQEWTQKNKLPLPKYE 187

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +  ++GP H+P FT+ V I           SK+ AEQ AA  ++ +
Sbjct: 188 LKKQTGPAHNPEFTISVYIKNYGRVSACASSKKVAEQKAAELMIGK 233


>gi|317129239|ref|YP_004095521.1| ribonuclease III [Bacillus cellulosilyticus DSM 2522]
 gi|315474187|gb|ADU30790.1| ribonuclease III [Bacillus cellulosilyticus DSM 2522]
          Length = 253

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 63/225 (28%), Positives = 104/225 (46%), Gaps = 5/225 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58
            L Y      +     N  +  +A THSS  + ++    +  ERLEFLGD +L L IS  
Sbjct: 26  KLEYKDFLTSLEVKTTNVDIYIQAFTHSSYVNEHRIRPHDDNERLEFLGDAVLELAISQY 85

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF ++ +  EGE++    ++V   + +++A EL     + +             ++ ADV
Sbjct: 86  LFKNYANMSEGEMTKLRAAIVCEPSLAKIADELKFGERVLLGKGEEMTGGRKRPALLADV 145

Query: 119 VESLIAALYLDGGIEVAGTFVD-KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
            ES + ALYLD G++    F+    + + A  +     D K++LQE    +     +YK+
Sbjct: 146 FESFVGALYLDLGMDAVYDFLKVNVYPKIADGAFSDMMDYKSQLQELVQREGQGQIQYKI 205

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
               GP H   F   V +       G   SK+ AEQ+AA + L++
Sbjct: 206 VQERGPAHAREFVSEVWLENKLLGIGAGRSKKEAEQMAAQKALEK 250


>gi|300311260|ref|YP_003775352.1| dsRNA-specific ribonuclease [Herbaspirillum seropedicae SmR1]
 gi|300074045|gb|ADJ63444.1| dsRNA-specific ribonuclease (RNAse III) protein [Herbaspirillum
           seropedicae SmR1]
          Length = 319

 Score =  248 bits (635), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 74/221 (33%), Positives = 114/221 (51%), Gaps = 6/221 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +    L++R+G+ F + SLL++ALTH S S  +    ERLEFLGD +L  ++++LLF  +
Sbjct: 1   MDPQLLQQRLGHTFKDASLLQQALTHRSHSALH---NERLEFLGDSVLNCVVASLLFERY 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
           D   EG+LS    +LV  ++  ++A+ L+L+ F+R+     K       SI AD +E+L 
Sbjct: 58  DKIDEGDLSRLRANLVKQQSLYEIAQRLELSQFLRLGEGELKSGGFRRPSILADTLEALF 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LD G E A   +   +      +      +DAKT LQE+   K    P+Y V    
Sbjct: 118 GAIFLDSGFEAARAVIRSLYVPVLEHVDPRTLGKDAKTLLQEFLQGKKIPLPQYNVIATH 177

Query: 182 GPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLK 221
           G  H   F +   +  L     G   S+RA EQ AA   L+
Sbjct: 178 GAAHSQEFEIECLVPKLDIQVFGTGGSRRAGEQAAAKLALE 218


>gi|290968970|ref|ZP_06560505.1| ribonuclease III [Megasphaera genomosp. type_1 str. 28L]
 gi|290780926|gb|EFD93519.1| ribonuclease III [Megasphaera genomosp. type_1 str. 28L]
          Length = 236

 Score =  248 bits (635), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 74/233 (31%), Positives = 112/233 (48%), Gaps = 10/233 (4%)

Query: 1   MSALRYSTLEKRI---GYA-FANRSLLEKALTHSSISHSYQES----YERLEFLGDRILG 52
           M   R   LE+ +   G   F N  LL++ALTHSS ++ ++       ERLEFLGD IL 
Sbjct: 1   MDNTRKKQLEEFLRTVGLPPFQNLLLLDQALTHSSYANEHKIRHGYFNERLEFLGDAILD 60

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
           L++   LF  +   +EGELS    S+VS    + V     +  ++ +             
Sbjct: 61  LVVGEYLFLQYPQMQEGELSKARASIVSEAPLAAVCSAFHMGKYLLLGHGEISSGGRERP 120

Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFG 170
            I AD  E+++ A+Y+D   E A  F+ ++ +     +++G + +D KT  QE+      
Sbjct: 121 GILADAFEAVVGAVYMDASYEEARKFILRHLRDYLALVENGHYDQDYKTLFQEYIQRDGE 180

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               Y +   SGPDHD  FT+ V   G    +G   SK+ AEQ AA + L R 
Sbjct: 181 HHITYSLCKESGPDHDKTFTMQVAADGKVLGEGCGKSKKMAEQHAARQALLRL 233


>gi|291278588|ref|YP_003495423.1| ribonuclease III [Deferribacter desulfuricans SSM1]
 gi|290753290|dbj|BAI79667.1| ribonuclease III [Deferribacter desulfuricans SSM1]
          Length = 231

 Score =  248 bits (635), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 82/220 (37%), Positives = 118/220 (53%), Gaps = 4/220 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH 62
               LE+ IGY F N+SLL +ALTHSS ++  +   +YERLEFLGD +L L+++  L   
Sbjct: 3   NIEELEELIGYRFKNKSLLLEALTHSSYAYEKKLKRNYERLEFLGDSVLQLIVTEYLVIK 62

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +   KEG LS   +  VS +  S++A ++ L  F+ +             SI AD+ ESL
Sbjct: 63  YKEFKEGVLSKYRSFFVSEDIISEIALKIRLNDFLMLGKGEIVSGGYTKPSILADIFESL 122

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           + A+YLDGG   A   V     +   +        D KTELQ+    KFG  PEYKV   
Sbjct: 123 LGAVYLDGGYNEARRIVLMLMSELMDEYIEKGIIIDPKTELQKITQQKFGYIPEYKVLKE 182

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            GP+HD  FTV ++++      G+  +K+ AE  AA++ L
Sbjct: 183 EGPEHDKVFTVELKLADGNKFIGVGRNKKKAEIDAASKAL 222


>gi|184159116|ref|YP_001847455.1| ribonuclease III [Acinetobacter baumannii ACICU]
 gi|183210710|gb|ACC58108.1| dsRNA-specific ribonuclease [Acinetobacter baumannii ACICU]
          Length = 234

 Score =  248 bits (635), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 79/217 (36%), Positives = 116/217 (53%), Gaps = 5/217 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            L  RIGY F    LL+ ALTH S+SH Y  +YERLEFLGD +LG++I+  L++ +    
Sbjct: 16  RLLSRIGYQFKQPELLQLALTHRSVSHKY--NYERLEFLGDSLLGMIIANYLYHAYPHEN 73

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG L+    +LV  E   ++A +L L+  + +S+   K       SI AD VE++I A+Y
Sbjct: 74  EGRLTRMRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRESILADTVEAIIGAIY 133

Query: 128 LDGG-IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           LD   + +    V K++      ++     +D K+ LQE+  A+    P Y+V    G  
Sbjct: 134 LDSSDLNLLKDIVLKWYTPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDA 193

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
               F V   + GL+   G   S+R AEQ AAAE+LK
Sbjct: 194 PHQHFKVECLVDGLSKIHGEGSSRRFAEQAAAAEILK 230


>gi|297343244|pdb|3N3W|A Chain A, 2.2 Angstrom Resolution Crystal Structure Of Nuclease
           Domain Ribonuclase Iii (Rnc) From Campylobacter Jejuni
 gi|297343245|pdb|3N3W|B Chain B, 2.2 Angstrom Resolution Crystal Structure Of Nuclease
           Domain Ribonuclase Iii (Rnc) From Campylobacter Jejuni
          Length = 248

 Score =  248 bits (635), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 123/222 (55%), Gaps = 4/222 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               LE+ + Y F +++LL  ALTH S   SY  + ERLEFLGD +L L++   LF+ F 
Sbjct: 27  NIEKLEQSLTYEFKDKNLLIHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLFHKFA 84

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+LS    +LV+ ++ +++A  L+L  FI +S     +      SI +D +E++I 
Sbjct: 85  KDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALEAIIG 144

Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A++L+ G E A T   +  ++    + +    +D KT+LQE    K G TP+Y+     G
Sbjct: 145 AIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFG 204

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           PDH  +F + + + G   A+ +  SK+ A+Q+AA   L++ G
Sbjct: 205 PDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 246


>gi|254392460|ref|ZP_05007640.1| ribonuclease 3 [Streptomyces clavuligerus ATCC 27064]
 gi|197706127|gb|EDY51939.1| ribonuclease 3 [Streptomyces clavuligerus ATCC 27064]
          Length = 300

 Score =  248 bits (635), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 77/224 (34%), Positives = 120/224 (53%), Gaps = 6/224 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           +A  ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L
Sbjct: 16  AASSHTLLEGRLGYRLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 74

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +       EG+L+    ++V++   ++V R L+L +FIR+             SI AD +
Sbjct: 75  YRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGAFIRLGRGEEGTGGRDKASILADTL 134

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD G++ A   V + +     KS       D KT LQE   ++    PEY V
Sbjct: 135 EAVIGAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTASEGLGVPEYLV 194

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           T  +GPDH+  FT    + G++   G   SK+ AEQ AA    +
Sbjct: 195 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWR 237


>gi|254486436|ref|ZP_05099641.1| ribonuclease III [Roseobacter sp. GAI101]
 gi|214043305|gb|EEB83943.1| ribonuclease III [Roseobacter sp. GAI101]
          Length = 228

 Score =  248 bits (635), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 83/211 (39%), Positives = 123/211 (58%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           +      E RIGY F+   LL +A+TH+S+S + ++  +RLEFLGDR+LGL+++  L   
Sbjct: 4   SADLRAFEGRIGYKFSKPELLIRAVTHASMSSANRDDNQRLEFLGDRVLGLVMAEALLML 63

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
              A EG+L+ RFN+LV  E C+ VARE+D+ + +++             ++  D +E++
Sbjct: 64  DPKATEGQLAPRFNALVRKEACADVAREIDMGAVLKLGRSEMLSGGRRKQALLGDAIEAI 123

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           IAA+Y+DGG + A   + + W  R     +  RDAKT LQEWA A+    P Y  T R G
Sbjct: 124 IAAVYMDGGFDAARDLIIRLWGDRVQTVKQDARDAKTALQEWAQARGFPPPSYVQTDRQG 183

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
           PDH P FT+  ++   A A  +  SKR AEQ
Sbjct: 184 PDHAPVFTITAKVQNGASAVAVAPSKRQAEQ 214


>gi|88797948|ref|ZP_01113535.1| ribonuclease III [Reinekea sp. MED297]
 gi|88779145|gb|EAR10333.1| ribonuclease III [Reinekea sp. MED297]
          Length = 219

 Score =  248 bits (635), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 84/217 (38%), Positives = 123/217 (56%), Gaps = 6/217 (2%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
           K IGY F + SLLE+ALTH S +   +++ ERLEFLGD IL   I+  L++ F +AKEG+
Sbjct: 3   KAIGYQFESESLLEQALTHRSYA---RKNNERLEFLGDAILNCTIAQALYHQFPNAKEGQ 59

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           +S     LV  +T +++ RE +L  F+R+ S   K       SI AD VE++I A+ LD 
Sbjct: 60  MSRLRAHLVKGDTLAEIGREFELGEFLRLGSGELKSGGFRRDSILADAVEAIIGAISLDA 119

Query: 131 GIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
            +  A   +  ++++R   L   +  +D+KT LQE+  A+    PEY+V   +G  H   
Sbjct: 120 DLGKAQQVLLSWYEERLSNLDLKENIKDSKTRLQEFLQARRLPLPEYQVKTITGEAHQQE 179

Query: 189 FTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKREG 224
           FTV  ++  L  P  G+  S+R AEQ AA   LK  G
Sbjct: 180 FTVHCQVESLETPMVGVGSSRRMAEQEAANAALKALG 216


>gi|303229664|ref|ZP_07316452.1| ribonuclease III [Veillonella atypica ACS-134-V-Col7a]
 gi|302515789|gb|EFL57743.1| ribonuclease III [Veillonella atypica ACS-134-V-Col7a]
          Length = 247

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 104/225 (46%), Gaps = 6/225 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
               L  R+     + S+L+ A TH+S ++ ++       +RLEFLGD +L L+I   LF
Sbjct: 19  SLHELVSRLHIPNIDISILDCAFTHTSYANEHKFKHIHHNQRLEFLGDAVLDLIIGEYLF 78

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             +    EG L+    + V  ++ + V+R L L  ++ +    +    S   SI AD  E
Sbjct: 79  TTYPDMSEGNLTKIKAATVCEDSLATVSRTLHLGDYLLLGHGEKSSGGSDRKSILADTFE 138

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           SLI ALY+    +    FV         ++  GK  +D KT LQE+          Y + 
Sbjct: 139 SLIGALYITTDYKTVMDFVLHQLAPNLKQALEGKRGKDYKTLLQEFVQRDGDKHIVYSLI 198

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             SGPDH   F + V I G+    G   SK+ AEQ AA   L+R 
Sbjct: 199 SESGPDHAKTFMMEVSIDGITYEAGTGKSKKIAEQHAAQLTLERL 243


>gi|237746716|ref|ZP_04577196.1| ribonuclease III [Oxalobacter formigenes HOxBLS]
 gi|229378067|gb|EEO28158.1| ribonuclease III [Oxalobacter formigenes HOxBLS]
          Length = 273

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 74/220 (33%), Positives = 110/220 (50%), Gaps = 6/220 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +    L+ RIGY F + +LLE A+TH S S  +    ERLEFLGD +L  + +  L+  +
Sbjct: 7   INLKMLQDRIGYTFHDAALLETAMTHRSYSSHH---NERLEFLGDSLLNCVTAINLYERY 63

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            +  EG LS   +SLV  +   ++A +L+L+ F+R+     K       SI AD +E+L 
Sbjct: 64  AALNEGSLSRLRSSLVRQQALYEIACKLELSRFLRLGEGELKAGGFKRPSILADAMEALF 123

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LD G E     + + +    + L    + +DAKT+LQE+        PEY V    
Sbjct: 124 GAVFLDAGFETVKRVITRLFADMMKELDPETYGKDAKTQLQEYLQGHKMALPEYHVVATR 183

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVL 220
           G  H+  F V   I        G   S+RA EQ AA + L
Sbjct: 184 GAAHNQEFEVECVIGKFDIHVYGTGSSRRAGEQEAARKAL 223


>gi|317059911|ref|ZP_07924396.1| ribonuclease 3 [Fusobacterium sp. D12]
 gi|313685587|gb|EFS22422.1| ribonuclease 3 [Fusobacterium sp. D12]
          Length = 235

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 75/233 (32%), Positives = 115/233 (49%), Gaps = 9/233 (3%)

Query: 1   MSAL--RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLL 54
           MSA+      LE  I Y F +++LL+ AL H S  + ++     + ERLE LGD +LGL+
Sbjct: 1   MSAVGRNLVDLEHNINYYFNDKNLLKNALIHRSFGNEHRTYKNINNERLELLGDAVLGLV 60

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
           ++  L+  +   KEG L+   +  VS    S V+R+L +  ++ +S            SI
Sbjct: 61  VAEYLYQKYPKEKEGVLAKIKSMAVSEPVLSGVSRKLHIGDYLLLSKGEIVTGGRDRNSI 120

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVT 172
             D  E+++ A+YLD G   A  +V  + K+       F    D KT LQE    KF   
Sbjct: 121 LGDAFEAILGAIYLDSGFFAAKEYVLFHLKEIIDHIDDFEEILDFKTILQEHCQKKFKEI 180

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           P+Y +    GPDH   F + V+I     A+    +K+ AEQ AA ++ K  G+
Sbjct: 181 PKYTLLREEGPDHRKLFEMQVQIQDKV-ARAKGNNKKIAEQKAAKKLCKEMGV 232


>gi|302554407|ref|ZP_07306749.1| ribonuclease III [Streptomyces viridochromogenes DSM 40736]
 gi|302472025|gb|EFL35118.1| ribonuclease III [Streptomyces viridochromogenes DSM 40736]
          Length = 274

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 79/223 (35%), Positives = 117/223 (52%), Gaps = 6/223 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLF 60
           A  ++ LE R+GY     +LL +ALTH S ++      + ERLEFLGD +LGL+++  L+
Sbjct: 17  ASSHTLLEGRLGYK-VESALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLY 75

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                  EG+L+    ++V++   ++V R LDL SFIR+             SI AD +E
Sbjct: 76  RTHPDLPEGQLAKLRAAVVNSRALAEVGRGLDLGSFIRLGRGEEGTGGRDKASILADTLE 135

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD G++ A   V + +     KS       D KT LQE    +    PEY VT
Sbjct: 136 AVIGAVYLDQGLDSAAELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLVT 195

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             +GPDH+  FT    + G++   G   SK+ AEQ AA    +
Sbjct: 196 -ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWR 237


>gi|323340721|ref|ZP_08080973.1| ribonuclease III [Lactobacillus ruminis ATCC 25644]
 gi|323091844|gb|EFZ34464.1| ribonuclease III [Lactobacillus ruminis ATCC 25644]
          Length = 230

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 74/221 (33%), Positives = 110/221 (49%), Gaps = 7/221 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNH 62
             L+   G    N  L ++A TH+S  + + +     YER+EFLGD ++ L +S  LF  
Sbjct: 7   KKLKDDYGINVKNTDLFDEAFTHASYVNEHPKEHLKYYERIEFLGDAVMQLCVSEYLFKR 66

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           + S  EG+LS    ++V  ++ S+ A+E     +IR+     K      +S+  D+ ES 
Sbjct: 67  YPSLPEGKLSRLRAAMVCEDSFSKFAKECHFDEYIRLGKGEEKADARNRSSLLCDIFESF 126

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180
           I ALYLD G +    F+      + L  G F    D KTELQE+         EYK+   
Sbjct: 127 IGALYLDQGKDKVVEFISAVVFPK-LDMGWFDHLLDHKTELQEYLQQNGDCKIEYKMLDE 185

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            GPD+D  +T+ V   G    +G+  SK+ AEQ AA + LK
Sbjct: 186 KGPDNDKTYTMAVYADGKKIGEGVGSSKKNAEQAAAYQALK 226


>gi|308061992|gb|ADO03880.1| ribonuclease III [Helicobacter pylori Cuz20]
          Length = 239

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 79/220 (35%), Positives = 116/220 (52%), Gaps = 4/220 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y+TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++ F  
Sbjct: 18  YATLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 75

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA   +++A+ + L  ++RVSS           SI +   E+L+A 
Sbjct: 76  YDEGKLSKLRASIVSAHGFTKLAKVIALQDYLRVSSSEEISNGREKPSILSSAFEALMAG 135

Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YL+ G+      +     +    L       D KT LQE   A+F V P Y++    GP
Sbjct: 136 VYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKEKGP 195

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           DH   F + + I     A     SK+ AEQ  A + L++ 
Sbjct: 196 DHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKL 235


>gi|152978261|ref|YP_001343890.1| ribonuclease III [Actinobacillus succinogenes 130Z]
 gi|189043288|sp|A6VLV8|RNC_ACTSZ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|150839984|gb|ABR73955.1| Ribonuclease III [Actinobacillus succinogenes 130Z]
          Length = 224

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 81/223 (36%), Positives = 120/223 (53%), Gaps = 6/223 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              L+ +IGY F+N +LL++ALTH S +  +    ERLEFLGD IL L I   L+  F  
Sbjct: 4   LDRLQHKIGYEFSNLTLLKQALTHRSAAKVH---NERLEFLGDAILNLTIGEALYLQFPH 60

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    +LV  +T +++A + DL +++ + +   K       SI AD VE++I A
Sbjct: 61  CNEGELSRMRATLVREKTLAELAHQFDLGNYMALGAGELKSGGFRRASILADCVEAIIGA 120

Query: 126 LYLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           + LD  +      V ++++   R ++ G+ ++D KT LQE+   K    P Y VT   G 
Sbjct: 121 MSLDSNLPKTMEIVRRWYEVLLRDIQPGENQKDPKTRLQEYLQGKRLALPAYNVTDIQGE 180

Query: 184 DHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGI 225
            H   FTV   +  L     G+  S+R AEQVAA ++LK   I
Sbjct: 181 AHCQTFTVECHVENLDRTFVGVAGSRRKAEQVAAEQILKVLDI 223


>gi|28210930|ref|NP_781874.1| ribonuclease III [Clostridium tetani E88]
 gi|73917577|sp|Q895M9|RNC_CLOTE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|28203369|gb|AAO35811.1| ribonuclease III [Clostridium tetani E88]
          Length = 235

 Score =  248 bits (634), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 75/228 (32%), Positives = 116/228 (50%), Gaps = 5/228 (2%)

Query: 1   MSA-LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLIST 57
           M+  +    L+ +I   F N  LL  ALTHSS ++  +  +  ERLEFLGD +L L+I+ 
Sbjct: 1   MNKYMDLKDLQNKIEIKFENIKLLHIALTHSSYANEKKRIQYNERLEFLGDSVLQLVITE 60

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF ++    EGELS +   +V   +   +A+ L+L  +I++S            SI AD
Sbjct: 61  YLFMNYKDKSEGELSKKRALIVCENSLFSIAKNLELGEYIKMSKGEELTGGRERISILAD 120

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEY 175
            VE+LIA++YLD GI+V   F+ K +     K+   +   D KT+LQE       +   Y
Sbjct: 121 AVEALIASIYLDKGIDVVREFILKNFYNIVEKAMKDEIILDYKTKLQEIIQKDGDIQINY 180

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +    GP H  +F   V+I       G+  SK+ +EQ AA + ++  
Sbjct: 181 ILIKHEGPPHRRKFYTEVKIKDNVLGYGIGYSKKESEQNAAKKAIENM 228


>gi|255281054|ref|ZP_05345609.1| ribonuclease III [Bryantella formatexigens DSM 14469]
 gi|255268502|gb|EET61707.1| ribonuclease III [Bryantella formatexigens DSM 14469]
          Length = 230

 Score =  248 bits (634), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 75/221 (33%), Positives = 118/221 (53%), Gaps = 6/221 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60
             S LE+  GY+F ++ LLE AL HSS ++ +++      ERLEFLGD +L L  S  L+
Sbjct: 4   DISELEQMTGYSFKDKELLENALRHSSYANEHKKYHLKDNERLEFLGDAVLELSSSEYLY 63

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            H+   KEGE++    S+V   T +Q A  ++L SF+R+     +       S+ +D +E
Sbjct: 64  RHYPKMKEGEMTKLRASIVCEPTLAQCAAAIELGSFLRLGRGEEQTGGRHRDSVVSDAME 123

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT-PEYKVTF 179
           +LI A++LDGG   A  FV+++     ++  K   D+KT LQE   + +      Y +  
Sbjct: 124 ALIGAIFLDGGFTSAKEFVNRFIL-NGVEHKKLFFDSKTILQEIVQSSYKGEAMSYHLLR 182

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             GP+HD  F V + I      +G   +K++AEQ AA   +
Sbjct: 183 EEGPEHDKTFVVQLFIGDKGFEEGRGRTKKSAEQEAAYRTM 223


>gi|291613749|ref|YP_003523906.1| ribonuclease III [Sideroxydans lithotrophicus ES-1]
 gi|291583861|gb|ADE11519.1| ribonuclease III [Sideroxydans lithotrophicus ES-1]
          Length = 224

 Score =  248 bits (634), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 118/222 (53%), Gaps = 6/222 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++++ L KR+GY F    LL++ALTH S S ++    ERLEFLGD +L   I+  L++ +
Sbjct: 1   MKHAALCKRLGYQFLQPQLLQRALTHRSYSAAH---NERLEFLGDSVLNCAIAKYLYDTY 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS   ++LV+ +T + +A++L+L   + +    RK       SI AD +E+L 
Sbjct: 58  PDLPEGDLSRLRSNLVNQQTLAILAQQLNLGEQLLLGEGERKSAGFRRPSILADALEALF 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+ LD G   A   V   +    +++      +DAKT LQE   ++    P+Y V    
Sbjct: 118 GAVLLDAGFMAAEKVVLGLYVPFIVQTDLKTLGKDAKTLLQEHLQSRKLALPQYHVAEIK 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKR 222
           G  H   F V  EI+ L   +QG   S+R AEQ+AA    ++
Sbjct: 178 GEAHAQTFVVTCEIAQLGLVSQGEGTSRRIAEQIAAERAYQQ 219


>gi|294815350|ref|ZP_06773993.1| Ribonuclease 3 [Streptomyces clavuligerus ATCC 27064]
 gi|326443704|ref|ZP_08218438.1| ribonuclease III [Streptomyces clavuligerus ATCC 27064]
 gi|294327949|gb|EFG09592.1| Ribonuclease 3 [Streptomyces clavuligerus ATCC 27064]
          Length = 303

 Score =  248 bits (634), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 77/224 (34%), Positives = 120/224 (53%), Gaps = 6/224 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           +A  ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L
Sbjct: 19  AASSHTLLEGRLGYRLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 77

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +       EG+L+    ++V++   ++V R L+L +FIR+             SI AD +
Sbjct: 78  YRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGAFIRLGRGEEGTGGRDKASILADTL 137

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD G++ A   V + +     KS       D KT LQE   ++    PEY V
Sbjct: 138 EAVIGAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTASEGLGVPEYLV 197

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           T  +GPDH+  FT    + G++   G   SK+ AEQ AA    +
Sbjct: 198 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWR 240


>gi|270156955|ref|ZP_06185612.1| ribonuclease III [Legionella longbeachae D-4968]
 gi|289164621|ref|YP_003454759.1| ribonuclease III [Legionella longbeachae NSW150]
 gi|269988980|gb|EEZ95234.1| ribonuclease III [Legionella longbeachae D-4968]
 gi|288857794|emb|CBJ11638.1| putative ribonuclease III [Legionella longbeachae NSW150]
          Length = 227

 Score =  248 bits (634), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 123/224 (54%), Gaps = 6/224 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            +    L +R+GY F N + L++ALTH S+     E+YER EFLGD IL  +I+  LF+ 
Sbjct: 2   KIDLERLCRRLGYHFKNSAYLKQALTHCSVG---SENYERFEFLGDSILSFVIANELFHR 58

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG+LS   + LV  E   ++A+E++L  F+ +     K       SI +D +E++
Sbjct: 59  FPLQSEGQLSRLRSFLVRGEMLVELAKEIELGDFLFLGQGELKSGGFRRASILSDALEAV 118

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            AA++LDGGI+ A   + K ++ R          +DAKT+LQE+  A+    PEY +T  
Sbjct: 119 FAAVFLDGGIDCAKEVILKLYRIRLESPNLNDCLKDAKTQLQEYLQAEKIPLPEYILTKI 178

Query: 181 SGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
            G +H+  F +   ++G      G   ++R AEQ+AA  +L+R 
Sbjct: 179 EGDEHNQIFYITCSVNGMKQQTFGQGSNRRKAEQLAAKAMLERL 222


>gi|268318202|ref|YP_003291921.1| ribonuclease III [Rhodothermus marinus DSM 4252]
 gi|262335736|gb|ACY49533.1| ribonuclease III [Rhodothermus marinus DSM 4252]
          Length = 260

 Score =  248 bits (634), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 78/212 (36%), Positives = 110/212 (51%), Gaps = 6/212 (2%)

Query: 18  ANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
            N +L E+ALTH S+      S+  S ERLEFLGD +LG +++  L+ HF    EG L+ 
Sbjct: 38  RNAALYEQALTHRSVLRGQPDSHLHSNERLEFLGDAVLGFVVAAYLYEHFPDRNEGFLTR 97

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
               LV+ E  +Q AR L L + +R+S ++ +       SI +D  E+L+ A+YLD G+E
Sbjct: 98  LRAKLVNREALAQAARRLGLGAHVRLSENMERAGGRDNDSILSDAFEALVGAIYLDLGLE 157

Query: 134 VAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
            A  FV++            RR  + K+ L E+A A+    P Y+V    GP H   FTV
Sbjct: 158 AARAFVERALLAPLDLEALARRPDNYKSLLLEFAQARGWPQPRYRVVAEEGPSHARTFTV 217

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              I      +G   SK+ AEQ AA E L R 
Sbjct: 218 EAWIGNRRLGRGTAGSKKQAEQQAAREALARL 249


>gi|217033708|ref|ZP_03439135.1| hypothetical protein HP9810_5g50 [Helicobacter pylori 98-10]
 gi|216943897|gb|EEC23334.1| hypothetical protein HP9810_5g50 [Helicobacter pylori 98-10]
          Length = 238

 Score =  248 bits (634), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 79/224 (35%), Positives = 117/224 (52%), Gaps = 4/224 (1%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +   Y+TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++
Sbjct: 13  TNSSYTTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYH 70

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F    EG+LS    S+VSA   +++A+ + L  ++RVSS           SI +   E+
Sbjct: 71  KFYQYDEGKLSKLRASIVSAHGFTKLAKVIALQDYLRVSSSEEISNGREKPSILSSAFEA 130

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           L+A +YL+ G+      +     +    L       D KT LQE   A+F V P Y++  
Sbjct: 131 LMAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLK 190

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             GPDH   F + + I     A     SK+ AEQ  A + L++ 
Sbjct: 191 EKGPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKL 234


>gi|90021888|ref|YP_527715.1| RNAse III [Saccharophagus degradans 2-40]
 gi|89951488|gb|ABD81503.1| RNAse III [Saccharophagus degradans 2-40]
          Length = 226

 Score =  248 bits (634), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 79/221 (35%), Positives = 118/221 (53%), Gaps = 8/221 (3%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            L  R+GY F ++SLL+ AL+H S     +++ ER+EFLGD +L  +I+  LF  F +AK
Sbjct: 6   RLVARLGYTFKDKSLLKLALSHRSYG---KQNNERVEFLGDSLLNFIIAEALFAKFPTAK 62

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG+L+    +LV  ET +++ARE  L  F+ +     K       SI AD VE+LI A+Y
Sbjct: 63  EGQLTQLRANLVKGETLAEIAREFGLGDFLLLGEGELKSGGFRRASILADAVEALIGAIY 122

Query: 128 LD--GGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           LD    +      V  ++  R   ++     +DAKT LQE+   +    P Y V    G 
Sbjct: 123 LDSNSSMPTCRERVLAWYATRLDKVELKATAKDAKTLLQEYLQERKMPLPTYTVLAEGGE 182

Query: 184 DHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
            H  +FTV   I+G   P   +  SKR AE++AA ++L + 
Sbjct: 183 AHSRQFTVECTITGKSKPCSAVGNSKRIAEKLAAEKMLSQL 223


>gi|294631623|ref|ZP_06710183.1| ribonuclease III [Streptomyces sp. e14]
 gi|292834956|gb|EFF93305.1| ribonuclease III [Streptomyces sp. e14]
          Length = 275

 Score =  248 bits (634), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 119/224 (53%), Gaps = 6/224 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           +A  ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L
Sbjct: 25  TASSHTLLEGRLGYRLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 83

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +       EG+L+    ++V++   ++V R LDL +FIR+             SI AD +
Sbjct: 84  YRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLDLGAFIRLGRGEEGTGGRDKASILADTL 143

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD G++ A   V + +     KS       D KT LQE    +    PEY V
Sbjct: 144 EAVIGAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLV 203

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           T  +GPDH+  FT    + G++   G   SK+ AEQ AA    +
Sbjct: 204 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWR 246


>gi|152981163|ref|YP_001353060.1| ribonuclease III [Janthinobacterium sp. Marseille]
 gi|151281240|gb|ABR89650.1| ribonuclease III [Janthinobacterium sp. Marseille]
          Length = 322

 Score =  248 bits (634), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 71/221 (32%), Positives = 113/221 (51%), Gaps = 6/221 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  + L+ R+G+ F +  LL++ALTH S         ERLEFLGD IL  ++++LLF+ +
Sbjct: 1   MDLTLLQNRLGHTFKDAVLLQQALTHRS---HGSVHNERLEFLGDSILNCVVASLLFDRY 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+L+ F+R+     K       SI AD +E+L 
Sbjct: 58  SKIDEGDLSRLRANLVKQQSLYEIAQRLELSHFLRLGEGELKSGGFRRPSILADTLEALF 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LD G + A   +   +     ++      +DAKT LQE+   K    P+Y V    
Sbjct: 118 GAIFLDAGFDTARDVIRALYIPILDSVDPKTLGKDAKTLLQEYLQGKKIALPQYNVVATH 177

Query: 182 GPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLK 221
           G  H+  F +   +  L     G   S+RA EQ AA   L+
Sbjct: 178 GAAHNQEFEIECLVPKLDIQVFGTGGSRRAGEQAAAKLALE 218


>gi|299769157|ref|YP_003731183.1| ribonuclease III [Acinetobacter sp. DR1]
 gi|298699245|gb|ADI89810.1| ribonuclease III [Acinetobacter sp. DR1]
          Length = 230

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 80/217 (36%), Positives = 118/217 (54%), Gaps = 5/217 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            L  RIGY F    LL+ ALTH S+SH Y  +YERLEFLGD +LG++I+  L++ + +  
Sbjct: 12  RLLSRIGYQFKQLELLQLALTHRSVSHKY--NYERLEFLGDSLLGMIIANYLYHAYPNEN 69

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG L+    +LV  E   ++A +L L+  + +S+   K       SI AD VE++I A+Y
Sbjct: 70  EGRLTRMRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRESILADTVEAIIGAIY 129

Query: 128 LDGG-IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           +D G + +    V K++      ++     +D K+ LQE+  A+    P Y+V    G  
Sbjct: 130 IDSGDLNLLTDIVLKWYVPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDA 189

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
               F V   I GL+   G   S+R AEQ AAAE+LK
Sbjct: 190 PHQHFKVECLIDGLSKIHGEGSSRRFAEQAAAAEILK 226


>gi|223041196|ref|ZP_03611448.1| ribonuclease III [Campylobacter rectus RM3267]
 gi|222877555|gb|EEF12684.1| ribonuclease III [Campylobacter rectus RM3267]
          Length = 222

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 70/218 (32%), Positives = 116/218 (53%), Gaps = 4/218 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE+++GY F +  LL+ ALTH S+      + ERLEFLGD ++ L+I   LF+ F    E
Sbjct: 4   LEEKLGYKFKDEKLLKTALTHKSV--KGGANNERLEFLGDAVMDLVIGDYLFHKFSRLSE 61

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    +LV+ ++ +++A+ L+L   I +S     +      SI +D  E+L+ A+YL
Sbjct: 62  GDLSKLRAALVNEKSFAELAKYLNLGQLINISPAEEHNGGRLKASILSDAFEALMGAIYL 121

Query: 129 DGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           + G +       K +++    +   +  +D KT LQE   A+F   P+Y +    GPDH 
Sbjct: 122 ESGFDAVRAASLKAFERCYPDINFDRMVKDYKTALQELTQARFAEIPKYVLVGSKGPDHK 181

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             F + + ++    ++    SK+ AEQ AA   L+  G
Sbjct: 182 KEFEIALMLNEREISRAAGKSKKEAEQKAAKTALEILG 219


>gi|325661266|ref|ZP_08149893.1| ribonuclease III [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325472773|gb|EGC75984.1| ribonuclease III [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 259

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 82/220 (37%), Positives = 115/220 (52%), Gaps = 8/220 (3%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLFNHFDSA 66
           K+IGY F  + LL+KA+ HSS ++      Q+  ERLEFLGD +L L  S  LF    S 
Sbjct: 39  KKIGYTFQKKELLQKAMMHSSYTNEKHMKKQDCNERLEFLGDAVLELTTSEALFFDNPSM 98

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGEL+    S+V     + VA+EL L S++ +             SI +D VE+LI A+
Sbjct: 99  PEGELTKTRASIVCEPALAFVAKELMLGSYLLLGKGEEATGGRQRDSITSDAVEALIGAI 158

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           YLDGG   A  F+ K+     L++ K   D+KT LQE   AKF     Y +    GPDH+
Sbjct: 159 YLDGGFASAKEFIQKFILS-DLENKKLFYDSKTILQEMVQAKFTENVRYVLEKEEGPDHN 217

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE---VLKRE 223
             FT    I       G   +K+A+EQ AA +   +L+++
Sbjct: 218 KSFTTSAYIGEECYGTGSGRTKKASEQEAAYQTILMLRKK 257


>gi|68171854|ref|ZP_00545186.1| Ribonuclease III [Ehrlichia chaffeensis str. Sapulpa]
 gi|88658070|ref|YP_507839.1| ribonuclease III [Ehrlichia chaffeensis str. Arkansas]
 gi|123492713|sp|Q2GFE4|RNC_EHRCR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|67998723|gb|EAM85443.1| Ribonuclease III [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599527|gb|ABD44996.1| ribonuclease III [Ehrlichia chaffeensis str. Arkansas]
          Length = 226

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 82/219 (37%), Positives = 115/219 (52%), Gaps = 2/219 (0%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHF 63
             ++ K I Y F N  LL +ALTH S+      + +YERLEFLGD +L ++IS +LFN F
Sbjct: 2   IESISKIIKYNFKNPQLLNEALTHPSLVSKDTLKFNYERLEFLGDAVLNIVISEMLFNIF 61

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG L+ +  +LV      +VA+ ++L  FI +S   R            + +E+LI
Sbjct: 62  PKDTEGNLAKKKTALVCGNKLVEVAQSINLGQFIMMSDGERACGGINNFRNLENALEALI 121

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            A+YLDGG   A  F+  +W+  A       +DAKT LQE    K    P Y    +SGP
Sbjct: 122 GAIYLDGGFTAAQDFIYLFWEHSATHMNVPPQDAKTILQELVQGKRLPAPAYHTIDKSGP 181

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           DH+P FTV V I      Q    +K+ AEQ AA+ +L +
Sbjct: 182 DHNPTFTVEVRIPSYQAIQATGHNKKLAEQKAASLMLNQ 220


>gi|225374436|ref|ZP_03751657.1| hypothetical protein ROSEINA2194_00051 [Roseburia inulinivorans DSM
           16841]
 gi|225213674|gb|EEG96028.1| hypothetical protein ROSEINA2194_00051 [Roseburia inulinivorans DSM
           16841]
          Length = 230

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 69/209 (33%), Positives = 104/209 (49%), Gaps = 5/209 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
            +  L+ +IGY F    LL +ALTHSS ++          ERLEFLGD +L ++ S  L+
Sbjct: 3   NFLELQDKIGYEFKQEKLLRQALTHSSFANEKHLRKHSDNERLEFLGDAVLEIVSSDFLY 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             +    EG+L+    SLV   T +   RE++L  ++ +             SI +D +E
Sbjct: 63  KAYPDKSEGDLTKLRASLVCEPTLAICTREMELGKYLFLGKGENLTGGRNRNSILSDALE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           ++I A+YLDGG E A TF+ K+     ++  K   D KT LQE     +     Y++   
Sbjct: 123 AVIGAIYLDGGFEHAKTFIHKFILT-DIEHKKLFYDCKTSLQEVVQGHYEEELNYRLISE 181

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            GPDHD RF+V   I       G+  +K+
Sbjct: 182 EGPDHDKRFSVEARIGERVIGTGIGHTKK 210


>gi|328885312|emb|CCA58551.1| Ribonuclease III [Streptomyces venezuelae ATCC 10712]
          Length = 270

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 116/221 (52%), Gaps = 6/221 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLF 60
           A  ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L+
Sbjct: 14  ASSHTLLEGRLGYQLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLY 72

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                  EG+L+    ++V++   + V REL+L SFIR+             SI AD +E
Sbjct: 73  RTHPDLPEGQLAKLRAAVVNSRALADVGRELELGSFIRLGRGEEGTGGRDKASILADTLE 132

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD G++ A   V + +     KS       D KT LQE   A+    PEY + 
Sbjct: 133 AVIGAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTAAEGLGVPEY-LV 191

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
              GPDH+  FT    + G++   G   SK+ AEQ AA   
Sbjct: 192 SEEGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESA 232


>gi|224368198|ref|YP_002602361.1| two domain fusion protein Includes: metal-dependent phosphoesterase
           / ribonuclease III [Desulfobacterium autotrophicum HRM2]
 gi|223690914|gb|ACN14197.1| two domain fusion protein Includes: metal-dependent phosphoesterase
           / ribonuclease III [Desulfobacterium autotrophicum HRM2]
          Length = 520

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 84/223 (37%), Positives = 115/223 (51%), Gaps = 7/223 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           R   LEK +G+ FANR LLE AL HSS  +  Q       +RLEF+GD +LGL I  +L 
Sbjct: 292 RLEILEKNLGHTFANRELLENALRHSSYVNELQANQVPDNQRLEFMGDAVLGLTIGQILM 351

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                  EG LS    +LVS    + +AR++DL  FIR+    R    S   SI AD  E
Sbjct: 352 EEHPGMNEGSLSKARAALVSEPALASMARQIDLGRFIRLGKGERLSRGSEKNSILADAFE 411

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +++AA+YLD G +     V + +    + + S     D K+ LQE+   K    P Y + 
Sbjct: 412 AVMAAIYLDCGFKQTCALVKEQFISQIKLINSAPEIEDFKSMLQEFVQEKGNTPPCYTIH 471

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              GPDHD  F++ V+   +  + G   SK+AAEQ AA   LK
Sbjct: 472 REFGPDHDKTFSICVKACDIE-SMGSGKSKKAAEQHAAQNALK 513


>gi|158521513|ref|YP_001529383.1| ribonuclease III [Desulfococcus oleovorans Hxd3]
 gi|158510339|gb|ABW67306.1| Ribonuclease III [Desulfococcus oleovorans Hxd3]
          Length = 231

 Score =  248 bits (633), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 110/223 (49%), Gaps = 7/223 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59
           +  + LE+ + Y F +  LL KAL HSS  +       E  ERLEFLGD  L L I  LL
Sbjct: 1   MNTTLLEQHLVYRFTDTGLLAKALRHSSYVNEQADPAMEDNERLEFLGDAALSLCIGHLL 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
              F    EG+LS     LV+A   + + R ++L  ++ +     +       SI A+ V
Sbjct: 61  MARFPELSEGDLSQTRAGLVNAGWLADIGRSMNLGEYVLLGKGEEQTNGRNKDSILANAV 120

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E+L+ A+YLDGG +     V   ++    AL +    R+ K+ LQE   A  G  P Y++
Sbjct: 121 EALLGAIYLDGGFDAVMAVVRHKFENDIEALAALDMNRNYKSLLQELTQATDGKAPTYEI 180

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
              +GPDHD  F   V    +  A+G   +K+ A+Q AA + L
Sbjct: 181 IDETGPDHDKTFHCRVSAGDIQ-AEGSGKNKKTAQQDAAHKAL 222


>gi|220927101|ref|YP_002502403.1| ribonuclease III [Methylobacterium nodulans ORS 2060]
 gi|219951708|gb|ACL62100.1| ribonuclease III [Methylobacterium nodulans ORS 2060]
          Length = 244

 Score =  248 bits (633), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 94/222 (42%), Positives = 132/222 (59%), Gaps = 1/222 (0%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             STLE++IG+ FA++ LL +ALTH S + +  ESY+RLEFLGDR+LGL ++  LF    
Sbjct: 15  DLSTLEEKIGHRFADQELLVRALTHVSAA-TGPESYQRLEFLGDRVLGLAVADGLFAALP 73

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            A EG+LS R + LV  E+C+ VA   D+   +++ +           +I ADV E+++ 
Sbjct: 74  GADEGDLSRRLSGLVRRESCAAVATAWDVGPHLKLGAGEVYGGGRRNPAILADVCEAILG 133

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A++LD G E A T +D+ +       G   RD K+ LQEWA      TP Y V  R+GPD
Sbjct: 134 AIFLDAGYEAAKTVIDRAFAAGNEVEGTRTRDPKSALQEWAQGLGLPTPTYAVVERAGPD 193

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           H P F +   + G+AP  G+  SKR AEQ AA  +L REG+W
Sbjct: 194 HAPIFRIEARVLGVAPGVGVGGSKRLAEQEAARLLLMREGVW 235


>gi|77165916|ref|YP_344441.1| ribonuclease III [Nitrosococcus oceani ATCC 19707]
 gi|254434280|ref|ZP_05047788.1| ribonuclease III [Nitrosococcus oceani AFC27]
 gi|90101630|sp|Q3J8D5|RNC_NITOC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|76884230|gb|ABA58911.1| RNAse III [Nitrosococcus oceani ATCC 19707]
 gi|207090613|gb|EDZ67884.1| ribonuclease III [Nitrosococcus oceani AFC27]
          Length = 233

 Score =  248 bits (633), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 80/214 (37%), Positives = 119/214 (55%), Gaps = 8/214 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              L +++GY FA  +LL  A+TH S +   +E+ ERLEFLGD IL  LI+  L++ F  
Sbjct: 5   LERLCRKLGYRFAEPALLRHAITHRSAT---KENNERLEFLGDSILNFLIADFLYSGFPR 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A+EGELS    +LV  ET +++AREL++   + +     K      TSI AD  E++I A
Sbjct: 62  AQEGELSRLRATLVKGETLAELARELEIGDHLILGLGELKSGGYRRTSILADAFEAVIGA 121

Query: 126 LYLDGGIEVAGTFVDKYWKQRAL----KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +YLDGG+E     V   ++ R      ++    +D KT LQE+  A+    P+Y+V+  S
Sbjct: 122 VYLDGGLEACRKLVSSLYRDRLETLTNEALLNLKDPKTRLQEYLQARQFPLPDYRVSAVS 181

Query: 182 GPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQV 214
           G  HD  F V   ++   P+  G+  S+R AEQ 
Sbjct: 182 GEAHDQVFQVECTLNNTFPSVIGIGRSRRKAEQD 215


>gi|297191816|ref|ZP_06909214.1| ribonuclease III [Streptomyces pristinaespiralis ATCC 25486]
 gi|197722006|gb|EDY65914.1| ribonuclease III [Streptomyces pristinaespiralis ATCC 25486]
          Length = 296

 Score =  248 bits (633), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 79/224 (35%), Positives = 120/224 (53%), Gaps = 6/224 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           +A  ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L
Sbjct: 9   NASSHTLLEGRLGYQLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 67

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +       EG+L+    ++V++   ++V R L+L SFIR+             SI AD +
Sbjct: 68  YRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTL 127

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD G++ A   V + +     KS       D KT LQE   A+    PEY V
Sbjct: 128 EAVIGAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTAAEGLGVPEYLV 187

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           T  +GPDH+  FT    + G++   G   SK+ AEQ AA    +
Sbjct: 188 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWR 230


>gi|153954021|ref|YP_001394786.1| ribonuclease III [Clostridium kluyveri DSM 555]
 gi|219854635|ref|YP_002471757.1| hypothetical protein CKR_1292 [Clostridium kluyveri NBRC 12016]
 gi|189043304|sp|A5N807|RNC_CLOK5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807246|sp|B9E1G8|RNC_CLOK1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|146346902|gb|EDK33438.1| Hypothetical protein CKL_1396 [Clostridium kluyveri DSM 555]
 gi|219568359|dbj|BAH06343.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 244

 Score =  248 bits (633), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 120/228 (52%), Gaps = 5/228 (2%)

Query: 1   MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLIST 57
           M  + +   +EK +  +F ++ L++ ALTHSS ++  +  +  ER+EFLGD +L L IS 
Sbjct: 1   MEKVNFFEEVEKTLNISFNDKELIDTALTHSSYANGKKGVKFNERMEFLGDSVLQLCISE 60

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF  + S  EGEL+ + + +V   +  +VA++ ++  +I++S           TSI A+
Sbjct: 61  YLFLIYKSKSEGELTKKRSLIVCENSLYEVAKKWNIGKYIKMSKGEEITGGRERTSILAN 120

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEY 175
            VE++IAA+Y+D G +    F+   +K    K+   +   D KT LQE       +  EY
Sbjct: 121 CVEAIIAAIYIDSGYKKTKQFIIDNFKDIIEKAIKNQIVLDYKTNLQEIVQQDGDIHIEY 180

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +    GP H  +F   V ++      G+  +K+ +EQ AA + LK+ 
Sbjct: 181 MLIKYEGPPHRRKFYTKVCVANNVMGSGVGYTKKESEQNAAQDALKKL 228


>gi|257784655|ref|YP_003179872.1| ribonuclease III [Atopobium parvulum DSM 20469]
 gi|257473162|gb|ACV51281.1| ribonuclease III [Atopobium parvulum DSM 20469]
          Length = 243

 Score =  248 bits (633), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 88/225 (39%), Positives = 115/225 (51%), Gaps = 3/225 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFN 61
            R +  E   G+ F N+ L+E ALTH S         SYERLEFLGD ILG +I+T LF 
Sbjct: 5   ERVAAAEAICGHTFINKDLIEAALTHPSAVEGKPVSASYERLEFLGDSILGAIIATELFE 64

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +    EG+L+    SLVS  T S V+  L ++  I +    +      M S   +V ES
Sbjct: 65  RYPDMDEGQLTRLKISLVSGHTLSIVSDTLGVSPLIVMGISEKGTGKRGMKSALENVYES 124

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFR 180
           ++ ALYLD G E    FV +        +   R    K+ LQE   A+   TPEYK+   
Sbjct: 125 IVGALYLDAGFEPTRDFVIRTLGPHISPTLAVRSVSPKSRLQEAVQAQGKATPEYKLIGE 184

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           SGP H P FT VV + GL   +G   SK+AAE  AA + L R G+
Sbjct: 185 SGPAHTPTFTAVVFVDGLKVGRGQGPSKKAAESEAAQDALVRLGV 229


>gi|261838098|gb|ACX97864.1| ribonuclease III [Helicobacter pylori 51]
          Length = 239

 Score =  248 bits (633), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 79/221 (35%), Positives = 116/221 (52%), Gaps = 4/221 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y+TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++ F 
Sbjct: 17  SYATLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFY 74

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+LS    S+VSA   +++A+ + L  ++RVSS           SI +   E+L+A
Sbjct: 75  QYDEGKLSKLRASIVSAHGFTKLAKVIALQDYLRVSSSEEISKGREKPSILSSAFEALMA 134

Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
            +YL+ G+      +     +    L       D KT LQE   A+F V P Y++    G
Sbjct: 135 GVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKEKG 194

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           PDH   F + + I     A     SK+ AEQ  A + L++ 
Sbjct: 195 PDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKL 235


>gi|254383289|ref|ZP_04998642.1| ribonuclease 3 [Streptomyces sp. Mg1]
 gi|194342187|gb|EDX23153.1| ribonuclease 3 [Streptomyces sp. Mg1]
          Length = 277

 Score =  248 bits (633), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 79/224 (35%), Positives = 120/224 (53%), Gaps = 6/224 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           +A  ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L
Sbjct: 16  AASSHTLLEGRLGYRLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 74

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +       EG+L+    ++V++   ++V R L+L SFIR+             SI AD +
Sbjct: 75  YTTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTL 134

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD G++ A   V + +     KS       D KT LQE   A+    PEY V
Sbjct: 135 EAVIGAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTAAEGLGVPEYLV 194

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           T  +GPDH+  FT    + G++   G   SK+ AEQ AA    +
Sbjct: 195 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWR 237


>gi|254428849|ref|ZP_05042556.1| ribonuclease III [Alcanivorax sp. DG881]
 gi|196195018|gb|EDX89977.1| ribonuclease III [Alcanivorax sp. DG881]
          Length = 228

 Score =  248 bits (633), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 85/220 (38%), Positives = 112/220 (50%), Gaps = 5/220 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             + L  R+GY F + SLLE ALTH S+S     +YERLEFLGD  LG +IS  LF  F 
Sbjct: 4   DLNRLMARLGYQFQDISLLELALTHRSVSRH--RNYERLEFLGDAQLGQIISVALFEQFP 61

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            A EG+L+    SLV  +T + VAREL L  ++ +     K       SI AD +ES+I 
Sbjct: 62  EAAEGQLTRMRASLVRGQTLALVARELGLGEYLVLGGGELKSGGFRRDSILADALESIIG 121

Query: 125 ALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+ LDGG       V  ++  R  A+     ++DAKT LQEW  A+    P Y+VT   G
Sbjct: 122 AMLLDGGESRCREVVLCWFAPRLDAISPQSAQKDAKTRLQEWLQARKFELPTYEVTQVEG 181

Query: 183 PDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLK 221
                 F V   +            S+R AEQ AA+  L+
Sbjct: 182 LAPKQTFDVQCSLDQVQQIFIAQGASRRKAEQEAASLALE 221


>gi|297379862|gb|ADI34749.1| ribonuclease III [Helicobacter pylori v225d]
          Length = 238

 Score =  248 bits (633), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 116/224 (51%), Gaps = 4/224 (1%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +   Y+TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++
Sbjct: 13  TNSSYATLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYH 70

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F    EG+LS    S+VS    +++A+ + L  ++RVSS           SI +   E+
Sbjct: 71  KFYQYDEGKLSKLRASIVSTHGFTKLAKVIALQDYLRVSSSEEISNGREKPSILSSAFEA 130

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           L+A +YL+ G+      +     +    L       D KT LQE   A+F V P Y++  
Sbjct: 131 LMAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLK 190

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             GPDH   F + + I     A     SK+ AEQ  A + L++ 
Sbjct: 191 EKGPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKL 234


>gi|319787580|ref|YP_004147055.1| ribonuclease III [Pseudoxanthomonas suwonensis 11-1]
 gi|317466092|gb|ADV27824.1| ribonuclease III [Pseudoxanthomonas suwonensis 11-1]
          Length = 230

 Score =  248 bits (633), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 76/216 (35%), Positives = 113/216 (52%), Gaps = 6/216 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+    + +  RIG+AFA+ SLL++ALTH S    +    ERLEFLGD ++ L+ +  L+
Sbjct: 1   MARNDRTVVRDRIGHAFADPSLLQQALTHRSAGSPH---NERLEFLGDAVVNLIAAEALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             +  A EG L+     LV   + + +AREL L   + +     K       SI AD +E
Sbjct: 58  QRWPKADEGVLTRARAELVREASLAVIARELQLGERLTLGPGELKSGGFRRDSILADALE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +++AA+YLD G +     V  +++Q   AL  G+  +DAKT LQEW   +    P Y++ 
Sbjct: 118 AVVAAIYLDAGYDACRAHVLPWFEQSIAALPVGQPGKDAKTRLQEWLQGRGKPLPAYELV 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQ 213
             SG DH   F     +S     A+G   S+R AEQ
Sbjct: 178 SESGEDHAKVFLARCTLSEPPASAEGQGTSRRLAEQ 213


>gi|225571976|ref|ZP_03780840.1| hypothetical protein RUMHYD_00270 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040509|gb|EEG50755.1| hypothetical protein RUMHYD_00270 [Blautia hydrogenotrophica DSM
           10507]
          Length = 244

 Score =  248 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 68/208 (32%), Positives = 107/208 (51%), Gaps = 5/208 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
              LEK +GY F + +LL++A+THSS S+          ERLEFLGD +L ++ S  L+ 
Sbjct: 12  LKELEKELGYQFRDINLLKQAVTHSSYSNEKNMGKLGCNERLEFLGDAVLEVISSEFLYQ 71

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F   +EGEL+ +  S+V   T +  ARE+ L +++ +             SI +D +E+
Sbjct: 72  KFPILQEGELTKKRASMVCEPTLALCAREIRLDNYLLLGHGEENTGGRKRDSIVSDALEA 131

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +I A+YLDGG+  A  F+ K+     ++  +   D+KT LQE           Y++    
Sbjct: 132 VIGAIYLDGGLASAKEFILKHVL-NDMEHKQLFYDSKTILQEIVQEHGNNPVSYQLIRED 190

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           GPDH+  FTV V +       G   +K+
Sbjct: 191 GPDHNKIFTVEVRVKQEVLGVGQGHTKK 218


>gi|208434584|ref|YP_002266250.1| ribonuclease III [Helicobacter pylori G27]
 gi|226741372|sp|B5Z735|RNC_HELPG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|208432513|gb|ACI27384.1| ribonuclease III [Helicobacter pylori G27]
          Length = 239

 Score =  247 bits (632), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 78/220 (35%), Positives = 115/220 (52%), Gaps = 4/220 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y+TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++ F  
Sbjct: 18  YTTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 75

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    ++VSA   +++A+ + L  ++RVSS           SI +   E+L+A 
Sbjct: 76  YDEGKLSKLRAAIVSAHGFTKLAKAIALQDYLRVSSSEEISKGREKPSILSSAFEALMAG 135

Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YL+ G+      +     +    L       D KT LQE   A+F V P Y++    GP
Sbjct: 136 VYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLQEKGP 195

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           DH   F + + I     A     SK+ AEQ  A   L++ 
Sbjct: 196 DHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYYALQKL 235


>gi|82702876|ref|YP_412442.1| ribonuclease III [Nitrosospira multiformis ATCC 25196]
 gi|82410941|gb|ABB75050.1| RNAse III [Nitrosospira multiformis ATCC 25196]
          Length = 230

 Score =  247 bits (632), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 75/220 (34%), Positives = 111/220 (50%), Gaps = 6/220 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L +++GY F    LL +ALTH S S  +    ERLEFLGD +L   ++ L+F+HF   
Sbjct: 11  AALCRKLGYTFRRPELLRQALTHRSHSIPH---NERLEFLGDAVLNCAVAGLIFHHFPDL 67

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG LS    +LV+ +  +++A+ L+L   IR      K       SI AD +E++I A+
Sbjct: 68  SEGSLSRIRANLVNQKMLAELAQTLELGKLIRFGEGELKSGGDKRPSILADALEAVIGAI 127

Query: 127 YLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD G E A   V+  +      L +    +D KT LQE+  ++    P Y V    G  
Sbjct: 128 YLDAGFEQAEKTVENLFIPSLGELNTHALGKDPKTLLQEYLQSRKLALPRYAVVATRGEA 187

Query: 185 HDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
           H  +F V   IS       G   S+R+AEQ AA +  ++ 
Sbjct: 188 HQQQFQVECVISRPQIRTLGEGTSRRSAEQHAARQAYEQL 227


>gi|308063545|gb|ADO05432.1| ribonuclease III [Helicobacter pylori Sat464]
          Length = 238

 Score =  247 bits (632), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 79/220 (35%), Positives = 116/220 (52%), Gaps = 4/220 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y+TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++ F  
Sbjct: 17  YATLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 74

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA   +++A+ + L  ++RVSS           SI +   E+L+A 
Sbjct: 75  YDEGKLSKLRASIVSAHGFTKLAKVIALQDYLRVSSSEEISNGREKPSILSSAFEALMAG 134

Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YL+ G+      +     +    L       D KT LQE   A+F V P Y++    GP
Sbjct: 135 VYLEAGLAKVQKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKEKGP 194

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           DH   F + + I     A     SK+ AEQ  A + L++ 
Sbjct: 195 DHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKL 234


>gi|91201952|emb|CAJ75012.1| similar to ribonuclease III [Candidatus Kuenenia stuttgartiensis]
          Length = 236

 Score =  247 bits (632), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 87/222 (39%), Positives = 128/222 (57%), Gaps = 3/222 (1%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +  ++   +  IGY+F    LLEKALTH+S       S ERLEFLGD +LG++IS  L+ 
Sbjct: 9   NPEKFIACQNIIGYSFKKMLLLEKALTHTSCRVENNFSNERLEFLGDAVLGMIISDYLYK 68

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
                 EGEL+   + +VS  T ++V  E  L  F+ V   L  D   F  S+ A+V E+
Sbjct: 69  TMPHYSEGELTNVKSVVVSQSTLAKVGMEAGLKEFLLVGRGL-NDRDLFPKSLLANVFEA 127

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           LIAA+Y+DGGIE A  F  +Y K+    +   + +++ K+ LQ+++  ++G+TP Y++  
Sbjct: 128 LIAAIYIDGGIEAASEFTLRYLKKEIDLVCKNQHKKNYKSILQQYSQKEYGITPTYRLLQ 187

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           + GPDH   F +VV I G    +G   SK+ AEQ AA E LK
Sbjct: 188 QIGPDHGKSFEIVVSIKGSEYGRGWGKSKKEAEQSAAKEALK 229


>gi|255321781|ref|ZP_05362936.1| ribonuclease III [Campylobacter showae RM3277]
 gi|255301261|gb|EET80523.1| ribonuclease III [Campylobacter showae RM3277]
          Length = 222

 Score =  247 bits (632), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 70/218 (32%), Positives = 116/218 (53%), Gaps = 4/218 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE+++GY F +  LL+ ALTH S+      + ERLEFLGD ++ L+I   LF+ F    E
Sbjct: 4   LEEKLGYKFKDEKLLKTALTHKSV--KGGANNERLEFLGDAVMDLVIGDYLFHKFSRLSE 61

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    +LV+ ++ +++A+ L+L   I +S     +      SI +D  E+L+ A+YL
Sbjct: 62  GDLSKLRAALVNEKSFAELAKYLNLGQLINISPAEEHNGGRAKASILSDAFEALMGAIYL 121

Query: 129 DGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           + G +       K +++    +   +  +D KT LQE   A+F   P+Y +    GPDH 
Sbjct: 122 ESGFDAVRAASLKAFERCYPDINFDRMVKDYKTALQELTQARFAQIPKYVLVGSKGPDHK 181

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             F + + ++    ++    SK+ AEQ AA   L+  G
Sbjct: 182 KEFEIALMLNEREISRAAGKSKKEAEQKAAKTALEILG 219


>gi|328957311|ref|YP_004374697.1| ribonuclease III [Carnobacterium sp. 17-4]
 gi|328673635|gb|AEB29681.1| ribonuclease III [Carnobacterium sp. 17-4]
          Length = 245

 Score =  247 bits (632), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 116/226 (51%), Gaps = 7/226 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M     + L+ +    F + S LE+A THSS  + ++    +  ER+EFLGD +L L +S
Sbjct: 15  MDDAFLTQLKTKFDLVFHDLSYLEEAFTHSSYVNEHRNLELKDNERIEFLGDAVLELTVS 74

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  + +  EG+L+    ++V   + SQ A+E +   FIR+     +       ++  
Sbjct: 75  RFLYELYPNLPEGKLTRLRATIVCEASLSQFAKEYEFDQFIRLGRGEERMNGRKRPALLC 134

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D+ ES I ALYLD GI+   +F+D+    + +KSG F    D KT LQE+   K  +  +
Sbjct: 135 DLFESFIGALYLDQGIDSVLSFLDQTIFPK-IKSGAFSHVMDHKTNLQEFLQQKGEIGID 193

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           Y++    GP H   F V V   G    QG   +K+AAEQVAA   L
Sbjct: 194 YQLVDEIGPAHQKAFVVEVLAEGQVLGQGQGKTKKAAEQVAAENAL 239


>gi|169632753|ref|YP_001706489.1| ribonuclease III [Acinetobacter baumannii SDF]
 gi|238688259|sp|B0VTM5|RNC_ACIBS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|169151545|emb|CAP00312.1| ribonuclease III, ds RNA [Acinetobacter baumannii]
          Length = 230

 Score =  247 bits (632), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 80/228 (35%), Positives = 120/228 (52%), Gaps = 9/228 (3%)

Query: 1   MSALRYS----TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIS 56
           M+  ++      L  RIGY F    LL+ ALTH S+SH Y  +YERLEFLGD +LG++I+
Sbjct: 1   MTKHQFKLSDPRLLSRIGYQFKQPELLQLALTHRSVSHKY--NYERLEFLGDSLLGMIIA 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L++ +    EG L+    +LV  E   ++A +L L+  + +S+   K       SI A
Sbjct: 59  NYLYHAYPHENEGRLTRMRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRESILA 118

Query: 117 DVVESLIAALYLDGG-IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTP 173
           D VE++I A+YLD   + +    V K++      ++     +D K+ LQE+  A+    P
Sbjct: 119 DTVEAIIGAIYLDSSDLNLLKDIVLKWYTPYLDHIEPTDQLKDPKSRLQEYLQARKKPLP 178

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            Y+V    G      F V   + GL+   G   S+R AEQ AAAE+LK
Sbjct: 179 VYEVVDIQGDAPHQHFKVECLVDGLSKIHGEGASRRFAEQAAAAEILK 226


>gi|205355648|ref|ZP_03222418.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205346425|gb|EDZ33058.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 225

 Score =  247 bits (632), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 123/222 (55%), Gaps = 4/222 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               LE+ + Y F +++LL  ALTH S   SY  + ERLEFLGD +L L++   LF+ F 
Sbjct: 4   NIEKLEQSLTYEFKDKNLLIHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLFHKFA 61

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+LS    +LV+ ++ +++A  L+L  FI +S     +      SI +D +E++I 
Sbjct: 62  KDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDTLEAIIG 121

Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A++L+ G E A T   +  ++    + +    +D KT+LQE    K G TP+Y+     G
Sbjct: 122 AIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFG 181

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           PDH  +F + + + G   A+ +  SK+ A+Q+AA   L++ G
Sbjct: 182 PDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 223


>gi|323137544|ref|ZP_08072621.1| ribonuclease III [Methylocystis sp. ATCC 49242]
 gi|322397170|gb|EFX99694.1| ribonuclease III [Methylocystis sp. ATCC 49242]
          Length = 234

 Score =  247 bits (632), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 89/208 (42%), Positives = 126/208 (60%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           + +  + LE+ +G+ FA++SLL  ALTH S S    ESYERLEFLGDR+LGL ++ +L+ 
Sbjct: 4   AKVDLAALEESVGHRFADQSLLRWALTHVSASSQRPESYERLEFLGDRVLGLAVAHMLYE 63

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F    EGELS R  +LV  ETC++VA    +  ++R+     +       +I  DV E+
Sbjct: 64  AFPGESEGELSRRLAALVRKETCAEVAEIWGVGPYMRLGEGEAQTGGRKKRAILGDVCEA 123

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +I A++LDGG + AG  V   +  + L++G+  RDAKT LQEWA A+    P Y++  RS
Sbjct: 124 IIGAVFLDGGADAAGRVVRAGFGPKMLEAGRDLRDAKTALQEWAQARRLPPPRYRLIARS 183

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           GPDH P F + V+I G   A G   SKR
Sbjct: 184 GPDHAPSFEMAVDIEGFESAGGAGASKR 211


>gi|302537165|ref|ZP_07289507.1| ribonuclease III [Streptomyces sp. C]
 gi|302446060|gb|EFL17876.1| ribonuclease III [Streptomyces sp. C]
          Length = 273

 Score =  247 bits (632), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 82/230 (35%), Positives = 123/230 (53%), Gaps = 8/230 (3%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           +A  ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L
Sbjct: 16  AASSHTLLEGRLGYQLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 74

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +       EG+L+    ++V++   ++V R L+L SFIR+             SI AD +
Sbjct: 75  YTTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTL 134

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD G++ A   V + +     KS       D KT LQE   A+    PEY V
Sbjct: 135 EAVIGAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTAAEGLGVPEYLV 194

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           T  +GPDH+  FT    + G++   G   SK+ AEQ AA    +  GI T
Sbjct: 195 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWR--GIRT 241


>gi|182679393|ref|YP_001833539.1| ribonuclease III [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182635276|gb|ACB96050.1| Ribonuclease III [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 235

 Score =  247 bits (632), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 102/228 (44%), Positives = 137/228 (60%), Gaps = 4/228 (1%)

Query: 1   MSALR--YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLIST 57
           MS  +     LE RIG+ F    LL  ALTH S++  + +E+Y+RLEFLGDR+LGL+I+ 
Sbjct: 1   MSRFKQDLEPLETRIGHRFVEADLLTTALTHVSVTVGARRETYQRLEFLGDRVLGLVIAE 60

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
           +L+  F  A+EGELS R   LV  E+C++VA E  +  F+R+    R  + +   +I  D
Sbjct: 61  MLYATFPEAEEGELSRRLADLVRKESCAEVALEWGVGPFVRLGESER-QIGTTKKAILGD 119

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           V ES+I A++LD G  VA   + K +  R     +  RDAKT LQEWA ++   TP Y+ 
Sbjct: 120 VCESIIGAVFLDAGYTVAQQVIVKAFDARMRSPRRPLRDAKTVLQEWAQSRGHPTPLYRE 179

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
             R GPDH P FT+ V I G A AQ    SKR AEQ AAA  ++REGI
Sbjct: 180 ICRCGPDHAPEFTISVCIPGYADAQAKGPSKRLAEQAAAAHFIEREGI 227


>gi|313892546|ref|ZP_07826133.1| ribonuclease III [Dialister microaerophilus UPII 345-E]
 gi|313118943|gb|EFR42148.1| ribonuclease III [Dialister microaerophilus UPII 345-E]
          Length = 239

 Score =  247 bits (632), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 77/231 (33%), Positives = 112/231 (48%), Gaps = 9/231 (3%)

Query: 1   MSALRYSTLEKRIG---YAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGL 53
           M   R   LE+ I        N  LL  ALTH+S ++ ++++     ERLEFLGD +L L
Sbjct: 1   MHKNRIKELEEFIKENEIPIKNHELLNIALTHTSYANEHKKNKEHDNERLEFLGDAVLDL 60

Query: 54  LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
           ++   LF  +    EGEL+    S V    C++++  L++  ++ +     K       S
Sbjct: 61  IVGEYLFRKYPLWSEGELTKAKASAVCKPACAEISTRLNVGKYLLLGKGEEKSGGRTRVS 120

Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGV 171
           I  D  ESLI A+YLD G EV   FV K+ ++    +  G + +D KT+LQE       V
Sbjct: 121 ILGDAFESLIGAIYLDIGYEVTFDFVIKHLEKFLDLIMQGDYDKDYKTDLQEILQQNGDV 180

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              Y V    GPDHD    + V   G     G+  SK+ A Q AA E ++R
Sbjct: 181 EICYNVIHDEGPDHDKTIWMSVTADGKYLGSGIGKSKKQAAQRAAKEAIER 231


>gi|210134869|ref|YP_002301308.1| ribonuclease III [Helicobacter pylori P12]
 gi|226741371|sp|B6JLQ0|RNC_HELP2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|210132837|gb|ACJ07828.1| ribonuclease III [Helicobacter pylori P12]
          Length = 239

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 79/220 (35%), Positives = 115/220 (52%), Gaps = 4/220 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++ F  
Sbjct: 18  YLTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 75

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA   +++A+ + L  ++RVSS           SI +   E+L+A 
Sbjct: 76  YDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRVSSSEEISNGREKPSILSSAFEALMAG 135

Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YL+ G+      +     +    L       D KT LQE   A+F V P Y++    GP
Sbjct: 136 VYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLQEKGP 195

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           DH   F + + I     A     SK+ AEQ  A + L++ 
Sbjct: 196 DHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQALQKL 235


>gi|148925776|ref|ZP_01809464.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CG8486]
 gi|145845786|gb|EDK22877.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CG8486]
          Length = 229

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 123/222 (55%), Gaps = 4/222 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               LE+ + Y F +++LL  ALTH S   SY  + ERLEFLGD +L L++   LF+ F 
Sbjct: 8   NIEKLEQSLTYEFKDKNLLIHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLFHKFA 65

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+LS    +LV+ ++ +++A  L+L  FI +S     +      SI +D +E++I 
Sbjct: 66  KDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALEAIIG 125

Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A++L+ G E A T   +  ++    + +    +D KT+LQE    K G TP+Y+     G
Sbjct: 126 AIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFG 185

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           PDH  +F + + + G   A+ +  SK+ A+Q+AA   L++ G
Sbjct: 186 PDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 227


>gi|83748443|ref|ZP_00945465.1| Ribonuclease III [Ralstonia solanacearum UW551]
 gi|207725215|ref|YP_002255611.1| ribonuclease III (rnase III) protein [Ralstonia solanacearum MolK2]
 gi|207743590|ref|YP_002259982.1| ribonuclease III (rnase III) protein [Ralstonia solanacearum
           IPO1609]
 gi|83724854|gb|EAP72010.1| Ribonuclease III [Ralstonia solanacearum UW551]
 gi|206590449|emb|CAQ37411.1| ribonuclease III (rnase III) protein [Ralstonia solanacearum MolK2]
 gi|206594989|emb|CAQ61916.1| ribonuclease III (rnase III) protein [Ralstonia solanacearum
           IPO1609]
          Length = 256

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 74/221 (33%), Positives = 109/221 (49%), Gaps = 6/221 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +    L++R+GY F+   LL++ALTH S         ERLEFLGD IL   ++ +L+  F
Sbjct: 1   MSLDALQQRLGYRFSKPELLQQALTHRS---HSAMHNERLEFLGDSILNCAVADMLYGMF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  +   ++A+ L L   +R+     K       SI AD +E++ 
Sbjct: 58  GKLDEGDLSRVRANLVKQQALYEIAQMLQLPDALRLGEGELKSGGFRRPSILADALEAIF 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG + A T + K +      +      +DAKT LQE+        P+Y V    
Sbjct: 118 GAVFLDGGFDAARTLIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYAVVATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221
           G  H+ +F V   I  L     G   S+RAAEQ AA   L+
Sbjct: 178 GAAHNQQFEVECTIPKLEIRVSGSGASRRAAEQSAAKLALE 218


>gi|270290359|ref|ZP_06196584.1| ribonuclease III [Pediococcus acidilactici 7_4]
 gi|270281140|gb|EFA26973.1| ribonuclease III [Pediococcus acidilactici 7_4]
          Length = 232

 Score =  247 bits (631), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 71/221 (32%), Positives = 110/221 (49%), Gaps = 7/221 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
           L +     F    LL++A T +S  + +     + YER+EFLGD +L L++S  L+  + 
Sbjct: 9   LSEMFDIHFTKHELLDEAFTQASYVNEHPHQGLKFYERIEFLGDAVLQLVVSEYLYKRYP 68

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              +G+L+    ++V   + S  A+E     +IR+     K       S+  D+ ES I 
Sbjct: 69  EMPQGKLTRLRAAMVCEASFSDFAKECHFDRYIRLGKGEEKSGARQRPSLLCDIFESFIG 128

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182
           ALYLD G +    FV +    + L  G+F    D K+ELQE       V   Y++   +G
Sbjct: 129 ALYLDQGRQAVEKFVRQVIFPK-LDEGRFDHIIDHKSELQELLQRNGEVEINYELISETG 187

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           PD+D  FTV V  +    A+G   SK+AAEQ AA + L++ 
Sbjct: 188 PDNDLVFTVQVSAANQVLAKGSGHSKKAAEQNAANKALQKL 228


>gi|226328142|ref|ZP_03803660.1| hypothetical protein PROPEN_02033 [Proteus penneri ATCC 35198]
 gi|225203846|gb|EEG86200.1| hypothetical protein PROPEN_02033 [Proteus penneri ATCC 35198]
          Length = 227

 Score =  247 bits (631), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 76/214 (35%), Positives = 114/214 (53%), Gaps = 7/214 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ L  + L+K++GY F    LL +ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNTLLVNQLQKKLGYTFTQNELLLQALTHRSASSKH---NERLEFLGDSILSYVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVA-GTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           +LI A++LD  I+      +  +++ R   +  G  ++D KT LQE+   +    P Y V
Sbjct: 118 ALIGAIFLDSDIQNIEKKIILNWYENRLAEISPGDKQKDPKTRLQEYLQGRHLPLPSYNV 177

Query: 178 TFRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRA 210
               G  HD  FT+  +ISG+  P +GM  S+R 
Sbjct: 178 VQVRGEAHDQEFTIHCQISGIEQPVKGMGTSRRK 211


>gi|300691972|ref|YP_003752967.1| ribonuclease III (RNase III) [Ralstonia solanacearum PSI07]
 gi|299079032|emb|CBJ51694.1| Ribonuclease III (RNase III) [Ralstonia solanacearum PSI07]
          Length = 256

 Score =  247 bits (631), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 74/221 (33%), Positives = 109/221 (49%), Gaps = 6/221 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +    L++R+GY F+   LL++ALTH S         ERLEFLGD IL   ++ +L+  F
Sbjct: 1   MSLEALQQRLGYRFSKPELLQQALTHRS---HSAMHNERLEFLGDSILNCAVADMLYGMF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  +   ++A+ L L   +R+     K       SI AD +E++ 
Sbjct: 58  GKLDEGDLSRVRANLVKQQALYEIAQMLQLPDALRLGEGELKSGGFRRPSILADALEAIF 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG + A T + K +      +      +DAKT LQE+        P+Y V    
Sbjct: 118 GAVFLDGGFDAARTLIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYAVVATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221
           G  H+ +F V   I  L     G   S+RAAEQ AA   L+
Sbjct: 178 GAAHNQQFEVECTIPKLEIRVSGSGASRRAAEQSAAKLALE 218


>gi|291546254|emb|CBL19362.1| RNAse III [Ruminococcus sp. SR1/5]
          Length = 226

 Score =  247 bits (631), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 78/209 (37%), Positives = 110/209 (52%), Gaps = 5/209 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
               LE+ IGY F  +SLLE+A+THSS ++          ERLEFLGD +L L+ S  L+
Sbjct: 4   NLKKLEQTIGYQFTAKSLLEQAMTHSSYANEKHLGKLGCNERLEFLGDAVLELISSDFLY 63

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F + +EGEL+ +  S+V  ++ +  ARE  L  FI +             SI +D +E
Sbjct: 64  KKFRNNQEGELTKKRASMVCEKSLAYCAREFGLPEFILLGRGEEMMGGRKRDSIVSDGLE 123

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           SLI A+YLDGG E A  FV K+     L+  +   D+KT LQE          EY++   
Sbjct: 124 SLIGAMYLDGGFEPAQAFVMKFIL-NDLEDKRIFYDSKTVLQEMVQEGGNHPVEYRLLKE 182

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            GPDH   FTV   I+G +   G+  +K+
Sbjct: 183 EGPDHSKSFTVEALINGKSMGTGIGHTKK 211


>gi|295094866|emb|CBK83957.1| RNAse III [Coprococcus sp. ART55/1]
          Length = 229

 Score =  247 bits (631), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 80/223 (35%), Positives = 121/223 (54%), Gaps = 6/223 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
            Y  LEKRIGY F +  LL  ALTH+S ++  +    ESYERLEFLGD IL  ++S  LF
Sbjct: 4   DYGELEKRIGYEFKDIRLLITALTHTSFANELKVNKTESYERLEFLGDAILEYIVSDYLF 63

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                 +EG+L+    SLV   T SQ++  L    F+ +S    +       SI  D+ E
Sbjct: 64  RKKREYEEGKLTKLRASLVCEFTLSQISESLGYGKFVLLSKGEAQTGGRTRKSILCDLFE 123

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           S++ A+YLDGG++VA  FV ++     +++     DAK+ LQE+         +Y++   
Sbjct: 124 SVLGAMYLDGGMDVAKKFVHQFLLD-DVETKSLFYDAKSTLQEFCQKNGKEL-KYELIEE 181

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            GP+H+  F     I G A A+G   +++ +EQ+AA + L + 
Sbjct: 182 KGPEHNKIFVSDALIDGQATARGEGSNRKNSEQMAAYKTLLQL 224


>gi|302383079|ref|YP_003818902.1| ribonuclease III [Brevundimonas subvibrioides ATCC 15264]
 gi|302193707|gb|ADL01279.1| ribonuclease III [Brevundimonas subvibrioides ATCC 15264]
          Length = 237

 Score =  247 bits (631), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 89/236 (37%), Positives = 130/236 (55%), Gaps = 11/236 (4%)

Query: 1   MSALR---YSTLEKRIGYAFANRSLLEKALTHSS-------ISHSYQESYERLEFLGDRI 50
           M+ +R    + L +R+G+ F + +LLE+ALTHSS        +       ERLEFLGDR+
Sbjct: 1   MANIRAEAVTALVQRLGHDFRDPALLERALTHSSVGEGADKAAGKPARHNERLEFLGDRV 60

Query: 51  LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110
           LGLL++  L + F +A EGELS R ++LV    C +V   L +   +R+S    K     
Sbjct: 61  LGLLVAQRLHHDFPAADEGELSSRLHALVDKHACGRVGEALKIGDALRLSPGETKTGGRR 120

Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKF 169
              + AD VE+L+AA++LDGG+E A    D+ W             + K+ LQEWA    
Sbjct: 121 KEGVVADAVEALLAAVFLDGGLEAARAVFDRAWAHELASPAPRALNNPKSALQEWAQGHG 180

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
              P Y+V  ++G DH P FTV V I G+ P   +  S++ AE+ AA  +L+REG+
Sbjct: 181 RPLPSYRVASQTGSDHAPTFTVEVSIEGVEPLTAVGRSRQDAEKAAATALLQREGV 236


>gi|226313209|ref|YP_002773103.1| ribonuclease III [Brevibacillus brevis NBRC 100599]
 gi|226096157|dbj|BAH44599.1| ribonuclease III [Brevibacillus brevis NBRC 100599]
          Length = 246

 Score =  247 bits (631), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 60/211 (28%), Positives = 102/211 (48%), Gaps = 5/211 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59
           + ++ L++ IG+ F + S+L +A THSS  +  +       ERLEFLGD +L L +S  L
Sbjct: 19  MNFAQLQETIGFRFRDESVLRQAFTHSSYVNEQRGKRISDNERLEFLGDAVLELTVSQFL 78

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  F    EGE++    ++V   +  + A  L+    + +             ++ ADV 
Sbjct: 79  YKTFPKMSEGEMTKLRAAIVCEPSLVKFAELLNFGDLVLLGKGEELTGGRQRPALLADVF 138

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVT 178
           E+ + ALYLD G+E   +F++KY   R  K    +  D K++LQE+          Y++ 
Sbjct: 139 EAFVGALYLDQGLEAVFSFMEKYVYPRIDKGEFAQVTDFKSQLQEFVQQDNLGDIHYRIV 198

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
              GP H+  F   V ++  +   G   SK+
Sbjct: 199 EEKGPAHNREFVSEVLLNNRSLGIGSGRSKK 229


>gi|330964520|gb|EGH64780.1| ribonuclease III [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 227

 Score =  247 bits (631), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 79/214 (36%), Positives = 112/214 (52%), Gaps = 6/214 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           ++  S LE+++GY F ++ L+  ALTH S +     + ERLEFLGD IL  +    LF  
Sbjct: 2   SVSLSRLERQLGYTFKDQELMILALTHRSFA---GRNNERLEFLGDAILNFVAGEALFER 58

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F  A+EG+LS     LV  ET + +AR  DL  ++R+ S   K       SI AD +E+L
Sbjct: 59  FPQAREGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADALEAL 118

Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           I A+YLD G+E A   V  +      +L      +D KT LQE+  ++    P Y+V   
Sbjct: 119 IGAIYLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACDLPRYEVVDI 178

Query: 181 SGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213
            G  H   F V  EI+ L   ++G   S+R AEQ
Sbjct: 179 QGEPHCRTFFVECEINLLNEKSRGQGVSRRIAEQ 212


>gi|257462242|ref|ZP_05626659.1| ribonuclease III [Fusobacterium sp. D12]
          Length = 232

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 111/227 (48%), Gaps = 7/227 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60
               LE  I Y F +++LL+ AL H S  + ++     + ERLE LGD +LGL+++  L+
Sbjct: 4   NLVDLEHNINYYFNDKNLLKNALIHRSFGNEHRTYKNINNERLELLGDAVLGLVVAEYLY 63

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             +   KEG L+   +  VS    S V+R+L +  ++ +S            SI  D  E
Sbjct: 64  QKYPKEKEGVLAKIKSMAVSEPVLSGVSRKLHIGDYLLLSKGEIVTGGRDRNSILGDAFE 123

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVT 178
           +++ A+YLD G   A  +V  + K+       F    D KT LQE    KF   P+Y + 
Sbjct: 124 AILGAIYLDSGFFAAKEYVLFHLKEIIDHIDDFEEILDFKTILQEHCQKKFKEIPKYTLL 183

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
              GPDH   F + V+I     A+    +K+ AEQ AA ++ K  G+
Sbjct: 184 REEGPDHRKLFEMQVQIQDKV-ARAKGNNKKIAEQKAAKKLCKEMGV 229


>gi|118444155|ref|YP_878292.1| ribonuclease III [Clostridium novyi NT]
 gi|118134611|gb|ABK61655.1| ribonuclease III [Clostridium novyi NT]
          Length = 237

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 116/223 (52%), Gaps = 4/223 (1%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLF 60
            +  + +E ++   F + ++L+ ALTHSS  +  +   S ERLEFLGD IL L IS LL+
Sbjct: 6   NIILNEVENKLKVKFNDINILDTALTHSSFINENKNINSNERLEFLGDSILQLCISELLY 65

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N ++   EG L+ +   +V   +  +VA++ ++  +I +S            SI +D VE
Sbjct: 66  NKYNDEPEGFLTKKRALIVCGNSLHEVAKKWNIGKYINMSKGEEMTGGRTRISILSDCVE 125

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++IA++YLD G EVA  F+ + + +   K+   +   D KT+LQE          EY + 
Sbjct: 126 AIIASIYLDQGYEVAKNFIIENFNEIIQKAHSNEIILDYKTKLQETIQKFGEYNIEYTLV 185

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              GP H  +F   V I  L    G   SK+ +EQ AA E LK
Sbjct: 186 SFEGPPHRRKFVTEVSIDSLVKGVGEGYSKKESEQNAAKEALK 228


>gi|154707005|ref|YP_001423899.1| ribonuclease III [Coxiella burnetii Dugway 5J108-111]
 gi|165919331|ref|ZP_02219417.1| ribonuclease III [Coxiella burnetii RSA 334]
 gi|189043305|sp|A9KFA0|RNC_COXBN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|154356291|gb|ABS77753.1| ribonuclease III [Coxiella burnetii Dugway 5J108-111]
 gi|165916991|gb|EDR35595.1| ribonuclease III [Coxiella burnetii RSA 334]
          Length = 233

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 74/219 (33%), Positives = 125/219 (57%), Gaps = 7/219 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            + L +R+G+ F N  LL+ ALTH S   S  ++ ERLEFLGD +LG +I++ L+     
Sbjct: 4   LNKLMERLGHQFNNLELLKIALTHRS---SGADNNERLEFLGDSVLGFIIASELYQRRPQ 60

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A+EG+LS    S+V+ +  +Q++ +L +  ++++    +K       SI AD +E+++ A
Sbjct: 61  AREGDLSRMRASMVNGDELAQMSTKLGINEYLQLGVGEQKSGGKRRRSILADALEAIVGA 120

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +Y+D G+E     V  ++ +R     K   ++DAK+ LQEW  A+    P Y+V   +G 
Sbjct: 121 IYIDAGLETCRRCVLNWYGERVDDLSKLSPKKDAKSLLQEWLQARRLPLPTYEV-KITGE 179

Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221
            H   FTV   + GL    +G++ ++R AEQ+AA   L+
Sbjct: 180 AHAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAKRFLE 218


>gi|189219126|ref|YP_001939767.1| Ribonuclease III [Methylacidiphilum infernorum V4]
 gi|189185984|gb|ACD83169.1| Ribonuclease III [Methylacidiphilum infernorum V4]
          Length = 247

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 75/230 (32%), Positives = 117/230 (50%), Gaps = 10/230 (4%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTLL 59
           ++   LEK++GYAF N  LLE+ALTH S         +  ++RLEFLGD +LGL ++  L
Sbjct: 1   MQLEELEKKMGYAFKNPQLLEEALTHPSFFVESIRVNKGDFQRLEFLGDAVLGLAVTEKL 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F  F S  EG+L+     LVS +    +A  L++  ++R+     K+      S  A+ +
Sbjct: 61  FQLFPSFDEGKLTKLRARLVSRKNLCSLASLLEIGKYLRLGKGEEKNQGRTKPSNLANAL 120

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR------DAKTELQEWAHAKFGVTP 173
           ES+I ALYLDGG + A +F+ + +    ++  K         ++K  LQE+   K    P
Sbjct: 121 ESVIGALYLDGGWDRAKSFIFELFNPLFMELEKDPMRFVEHENSKGLLQEFLQKKGTELP 180

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            Y++   SG  H+  + V V        +G   SK+ AE  AA E  ++ 
Sbjct: 181 IYRIVLESGEAHNKWYEVEVSWKNQVLGKGSGKSKKEAELRAAKEAFEKL 230


>gi|171057289|ref|YP_001789638.1| ribonuclease III [Leptothrix cholodnii SP-6]
 gi|170774734|gb|ACB32873.1| Ribonuclease III [Leptothrix cholodnii SP-6]
          Length = 228

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 82/226 (36%), Positives = 127/226 (56%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           MS     TL+ R+G+ F ++SLL +A++H S      +  ERLEFLGD +L + +S LLF
Sbjct: 1   MSTYPLDTLQARLGHVFRDQSLLLRAVSHRS---HGADHNERLEFLGDAVLNMTVSDLLF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + FD + EG+L+     LV  +   ++A  L L + +R+S    +   +   SI AD +E
Sbjct: 58  DQFDDSPEGDLTRVRAHLVRQDMLHRLALSLQLPAVLRLSDGEARAGGAQRPSILADAME 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+Y D G E A   V + ++    +  +  + +DAKT+LQEW  A+    PEY++ 
Sbjct: 118 AVIGAVYRDAGYEAAQALVRRLFEPLVSETVTQAWAKDAKTQLQEWLQARRQSVPEYRIE 177

Query: 179 FRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223
              G  HD  F VV  ++G    A+G   S+RAAEQ AA  VL++ 
Sbjct: 178 TTRGRAHDQTFVVVCSVAGPGIEARGEGRSRRAAEQEAARLVLEQL 223


>gi|153208682|ref|ZP_01946929.1| ribonuclease III [Coxiella burnetii 'MSU Goat Q177']
 gi|212219222|ref|YP_002306009.1| ribonuclease III [Coxiella burnetii CbuK_Q154]
 gi|226741367|sp|B6J4J9|RNC_COXB1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|120575793|gb|EAX32417.1| ribonuclease III [Coxiella burnetii 'MSU Goat Q177']
 gi|212013484|gb|ACJ20864.1| ribonuclease III [Coxiella burnetii CbuK_Q154]
          Length = 233

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 74/219 (33%), Positives = 125/219 (57%), Gaps = 7/219 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            + L +R+G+ F N  LL+ ALTH S   S  ++ ERLEFLGD +LG +I++ L+     
Sbjct: 4   LNKLMERLGHQFNNLELLKIALTHRS---SGADNNERLEFLGDSVLGFIIASELYQRRPQ 60

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A+EG+LS    S+V+ +  +Q++ +L +  ++++    +K       SI AD +E+++ A
Sbjct: 61  AREGDLSRMRASMVNGDELAQMSIKLGINEYLQLGVGEQKSGGKRRRSILADALEAIVGA 120

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +Y+D G+E     V  ++ +R     K   ++DAK+ LQEW  A+    P Y+V   +G 
Sbjct: 121 IYIDAGLETCRRCVLNWYGERVDDLSKLSPKKDAKSLLQEWLQARRLPLPTYEV-KITGE 179

Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221
            H   FTV   + GL    +G++ ++R AEQ+AA   L+
Sbjct: 180 AHAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAKRFLE 218


>gi|57238646|ref|YP_179777.1| ribonuclease III [Campylobacter jejuni RM1221]
 gi|81353160|sp|Q5HSF8|RNC_CAMJR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|57167450|gb|AAW36229.1| ribonuclease III [Campylobacter jejuni RM1221]
 gi|315059085|gb|ADT73414.1| Ribonuclease III [Campylobacter jejuni subsp. jejuni S3]
          Length = 224

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 74/222 (33%), Positives = 122/222 (54%), Gaps = 4/222 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               LE+ + Y F +++LL  ALTH S   SY  + ERLEFLGD +L L++   LF+ F 
Sbjct: 3   NIEKLERSLTYEFKDKNLLIHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLFHKFA 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+LS    +LV+ ++ +++A  L+L  FI +S     +      SI +D +E++I 
Sbjct: 61  KDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGREKPSILSDALEAIIG 120

Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A++L+ G E   T   +  ++    + +    +D KT+LQE    K G TP+Y+     G
Sbjct: 121 AIHLEAGFEFTKTIALRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFG 180

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           PDH  +F + + + G   A+ +  SK+ A+Q+AA   L++ G
Sbjct: 181 PDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 222


>gi|153951733|ref|YP_001398912.1| ribonuclease III [Campylobacter jejuni subsp. doylei 269.97]
 gi|189043301|sp|A7H5Y2|RNC_CAMJD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|152939179|gb|ABS43920.1| ribonuclease III [Campylobacter jejuni subsp. doylei 269.97]
          Length = 225

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 123/222 (55%), Gaps = 4/222 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               LE+ + Y F +++LL  ALTH S   SY  + ERLEFLGD +L L++   LF+ F 
Sbjct: 3   NIEKLEQSLTYEFKDKNLLIHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLFHKFT 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+LS    +LV+ ++ +++A  L+L  FI +S     +      SI +D +E++I 
Sbjct: 61  KDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGKEKPSILSDALEAIIG 120

Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A++L+ G E A T   +  ++    + +    +D KT+LQE    K G TP+Y+     G
Sbjct: 121 AIHLEAGFEFAKTIALRLMEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFG 180

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           PDH  +F + + + G   A+ +  SK+ A+Q+AA   L++ G
Sbjct: 181 PDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 222


>gi|300113378|ref|YP_003759953.1| ribonuclease III [Nitrosococcus watsonii C-113]
 gi|299539315|gb|ADJ27632.1| ribonuclease III [Nitrosococcus watsonii C-113]
          Length = 233

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 78/215 (36%), Positives = 117/215 (54%), Gaps = 8/215 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               L +++GY FA  +LL  A+TH S +   +E+ ERLEFLGD IL  LI+  L++ F 
Sbjct: 4   DLGRLCQKLGYQFAEPALLRHAITHRSAA---KENNERLEFLGDSILNFLIADFLYSGFP 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            A+EG+LS    +LV  ET +++AREL++   + +     K      TSI AD  E++I 
Sbjct: 61  KAQEGKLSRLRATLVKGETLAELARELEIGDHLILGLGELKSGGYRRTSILADAFEAVIG 120

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGK----FRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           A+YLDGG+E     V   ++ R            +D KT LQE+  A+    P+Y+V+  
Sbjct: 121 AVYLDGGLEACRQLVSSLYRDRLETLTDEVLLNLKDPKTRLQEYLQARQFPLPDYRVSAV 180

Query: 181 SGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQV 214
           +G  HD  F V   ++   P+  G+  S+R AEQ 
Sbjct: 181 NGEAHDQVFQVECTLNNTFPSVIGIGRSRRKAEQD 215


>gi|296136816|ref|YP_003644058.1| ribonuclease III [Thiomonas intermedia K12]
 gi|295796938|gb|ADG31728.1| ribonuclease III [Thiomonas intermedia K12]
          Length = 276

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 79/221 (35%), Positives = 117/221 (52%), Gaps = 6/221 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + LE R+GY F +R L E+ALTH S      +  ERLEFLGD +L L  +  L++     
Sbjct: 3   TALETRLGYVFRDRKLFERALTHRSFG---ADHNERLEFLGDSVLNLSAAAWLYHQAARQ 59

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+LS    +LV AE  ++VAR +DL  F+R+     +   +   SI AD VE+L+ A+
Sbjct: 60  DEGQLSRLRAALVRAEALAEVARAIDLGRFLRLGEGELQSGGAQRESILADTVEALLGAI 119

Query: 127 YLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YL+ G + A   + + +      L +   R+DAKT+LQE+   +    P Y V    G  
Sbjct: 120 YLEAGFDTAQEVMRRLFAPLMDTLDADVVRKDAKTQLQEFLQGQRLPLPSYAVLDVRGAA 179

Query: 185 HDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREG 224
           H  +F V   +  L    +G   S+R AEQ AA  +++R G
Sbjct: 180 HQQQFKVECAVEALGLKVEGEGDSRRRAEQDAATRMIERIG 220


>gi|332525373|ref|ZP_08401536.1| ribonuclease III [Rubrivivax benzoatilyticus JA2]
 gi|332108645|gb|EGJ09869.1| ribonuclease III [Rubrivivax benzoatilyticus JA2]
          Length = 241

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 80/224 (35%), Positives = 123/224 (54%), Gaps = 7/224 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M A R+  L++R+G+ F   +L+ +ALTH S    +    ERLEFLGD +L   +S LL+
Sbjct: 1   MDA-RHDALQQRLGHRFTRTALMTRALTHRSWGAEH---NERLEFLGDSVLNCAVSALLY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  + EG+L+     LV  ++  +VA  L L+  +R+S    +   +   SI AD VE
Sbjct: 57  ERFSGSDEGDLTRVRAHLVREDSLHRVALTLGLSEVLRMSEGEMRGGGAQRPSILADAVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI A++LDGG + A   V + + +   A ++  + +DAKTELQEW  A+    P Y++ 
Sbjct: 117 ALIGAIFLDGGFDPALATVRRLFGEVIAATEADAWSKDAKTELQEWLQARRLPVPAYRIV 176

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLK 221
              G  H   F V   ++ L  A+ G   S+R AEQ AA  +L+
Sbjct: 177 ATRGEKHAQTFEVECAVATLGLAERGEGRSRRTAEQEAARRLLE 220


>gi|317014083|gb|ADU81519.1| ribonuclease III [Helicobacter pylori Gambia94/24]
          Length = 239

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 79/220 (35%), Positives = 116/220 (52%), Gaps = 4/220 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++ F  
Sbjct: 18  YLTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 75

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA   +++A+ + L  ++R+SS           SI +   E+L+A 
Sbjct: 76  YDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRISSSEEISKGREKPSILSSAFEALMAG 135

Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YL+ G+      + K   +    L       D KT LQE   A+F V P Y++    GP
Sbjct: 136 VYLEAGLAKVRKIIQKLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLQEKGP 195

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           DH   F + + I     A     SK+ AEQ  A + L++ 
Sbjct: 196 DHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQALQKL 235


>gi|160871765|ref|ZP_02061897.1| ribonuclease III [Rickettsiella grylli]
 gi|159120564|gb|EDP45902.1| ribonuclease III [Rickettsiella grylli]
          Length = 230

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 122/224 (54%), Gaps = 5/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
              +L +++ Y F N  LLE AL+H S      ++ ERLE+LGD +L  +I+  LF    
Sbjct: 4   EIESLCEKLNYQFKNPELLEDALSHRSF--RGNKNNERLEYLGDAVLNFVIAAALFRQNI 61

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            A+EGELS    +LV  ET + +A+  +L  ++R+ +   K   +   SI AD +E+++ 
Sbjct: 62  KAREGELSRLRANLVRGETLTDLAQGFELGKYLRLGAGELKTGGAQRKSILADGMEAVVG 121

Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YLDGG +   T + +++  R   ++     +D KT+LQE+  AK    P Y +    G
Sbjct: 122 AIYLDGGFQACETCILRWYANRLENIEMIPDLKDPKTQLQEYLQAKKLALPVYTILALEG 181

Query: 183 PDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKREGI 225
           P H   F V  +I GL   A G+  S+R AEQ AA ++L+   I
Sbjct: 182 PAHQQSFKVECQIQGLPHKAIGLGSSRRRAEQKAAEKILEELAI 225


>gi|304384763|ref|ZP_07367109.1| ribonuclease III [Pediococcus acidilactici DSM 20284]
 gi|304328957|gb|EFL96177.1| ribonuclease III [Pediococcus acidilactici DSM 20284]
          Length = 235

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 71/221 (32%), Positives = 110/221 (49%), Gaps = 7/221 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
           L +     F    LL++A T +S  + +     + YER+EFLGD +L L++S  L+  + 
Sbjct: 12  LSEMFDIHFTKHELLDEAFTQASYVNEHPHQGLKFYERIEFLGDAVLQLVVSEYLYKRYP 71

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              +G+L+    ++V   + S  A+E     +IR+     K       S+  D+ ES I 
Sbjct: 72  EMPQGKLTRLRAAMVCEASFSDFAKECHFDRYIRLGKGEEKSGARQRPSLLCDIFESFIG 131

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182
           ALYLD G +    FV +    + L  G+F    D K+ELQE       V   Y++   +G
Sbjct: 132 ALYLDQGRQAVEKFVRQVIFPK-LDEGRFDHIIDHKSELQELLQRNGEVEINYELISETG 190

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           PD+D  FTV V  +    A+G   SK+AAEQ AA + L++ 
Sbjct: 191 PDNDLVFTVQVSAANQVLAKGSGHSKKAAEQNAANKALQKL 231


>gi|222152723|ref|YP_002561900.1| ribonuclease III [Streptococcus uberis 0140J]
 gi|254807903|sp|B9DRH1|RNC_STRU0 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|222113536|emb|CAR41327.1| ribonuclease III [Streptococcus uberis 0140J]
          Length = 230

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 74/221 (33%), Positives = 115/221 (52%), Gaps = 7/221 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
           L+      F +++LLE A TH+S ++ ++       ERLEFLGD +L L+IS  LF  + 
Sbjct: 8   LKSSFAIEFEDKTLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIISEYLFKKYP 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGELS + + +V  E+ +  +R      +I++     K       +I  D+ E+ + 
Sbjct: 68  HKAEGELSKQRSMIVREESLASFSRHCAFEPYIKLGKGEEKSGGRNRDTILGDLFEAFLG 127

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182
           AL LD G+E    F+++    + ++ G F +  D KT LQE   AK     +YKV   SG
Sbjct: 128 ALLLDKGVEEVRRFLNQVMIPQ-VEKGNFEKVNDYKTSLQEILQAKGDTIIDYKVINESG 186

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           P H  +F VVV  + +  ++G+  SK+ AEQ AA   LK  
Sbjct: 187 PAHAKQFEVVVLANQVELSKGIGRSKKLAEQNAAENALKAL 227


>gi|86149260|ref|ZP_01067491.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88596211|ref|ZP_01099448.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 84-25]
 gi|218563224|ref|YP_002345004.1| ribonuclease III [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|22654076|sp|Q9PM40|RNC_CAMJE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|85840042|gb|EAQ57300.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88191052|gb|EAQ95024.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112360931|emb|CAL35732.1| ribonuclease III [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|284926829|gb|ADC29181.1| ribonuclease III [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315927617|gb|EFV06948.1| ribonuclease III [Campylobacter jejuni subsp. jejuni DFVF1099]
 gi|315928870|gb|EFV08132.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 305]
          Length = 224

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 123/222 (55%), Gaps = 4/222 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               LE+ + Y F +++LL  ALTH S   SY  + ERLEFLGD +L L++   LF+ F 
Sbjct: 3   NIEKLEQSLTYEFKDKNLLIHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLFHKFA 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+LS    +LV+ ++ +++A  L+L  FI +S     +      SI +D +E++I 
Sbjct: 61  KDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALEAIIG 120

Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A++L+ G E A T   +  ++    + +    +D KT+LQE    K G TP+Y+     G
Sbjct: 121 AIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFG 180

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           PDH  +F + + + G   A+ +  SK+ A+Q+AA   L++ G
Sbjct: 181 PDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 222


>gi|83311357|ref|YP_421621.1| dsRNA-specific ribonuclease [Magnetospirillum magneticum AMB-1]
 gi|82946198|dbj|BAE51062.1| dsRNA-specific ribonuclease [Magnetospirillum magneticum AMB-1]
          Length = 228

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 83/220 (37%), Positives = 123/220 (55%), Gaps = 4/220 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62
           + L   +G+AFA   LL +ALTH S+    +    + YERLEFLGDR+LGL+++ +LF+ 
Sbjct: 6   AELSALLGHAFARPELLAQALTHPSMHQGRKSRTSDPYERLEFLGDRVLGLVVAEMLFSR 65

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F +  EG L+ R  +LV  E  +++A E+ L   + ++             I AD  E++
Sbjct: 66  FPNEAEGALARRHAALVRREAVARIATEIGLGRCLVLAKGEDDAGGRANPGILADACEAV 125

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           I ALY D G  VA +FV   W+    ++    +DAKT LQEWA  +    P Y+V  + G
Sbjct: 126 IGALYADAGFAVAASFVRSRWEPMMEEALAPPKDAKTGLQEWAQGRGKPLPHYQVLGQEG 185

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           P H+P F + V + G+  A G   SKR AEQ AA  +L++
Sbjct: 186 PPHEPIFLIEVSVEGVGSAVGRGASKRVAEQAAAGLLLEQ 225


>gi|15611674|ref|NP_223325.1| ribonuclease III [Helicobacter pylori J99]
 gi|7531198|sp|Q9ZLH2|RNC_HELPJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|4155159|gb|AAD06188.1| RIBONUCLEASE III [Helicobacter pylori J99]
          Length = 239

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 79/220 (35%), Positives = 115/220 (52%), Gaps = 4/220 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++ F  
Sbjct: 18  YLTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 75

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA   +++A+ + L  ++RVSS           SI +   E+L+A 
Sbjct: 76  YDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRVSSSEEISKGREKPSILSSAFEALMAG 135

Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YL+ G+      +     +    L       D KT LQE   A+F V P Y++    GP
Sbjct: 136 VYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLQEKGP 195

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           DH   F + + I     A     SK+ AEQ  A + L++ 
Sbjct: 196 DHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQALQKL 235


>gi|308184450|ref|YP_003928583.1| ribonuclease III [Helicobacter pylori SJM180]
 gi|308060370|gb|ADO02266.1| ribonuclease III [Helicobacter pylori SJM180]
          Length = 239

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 79/220 (35%), Positives = 115/220 (52%), Gaps = 4/220 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++ F  
Sbjct: 18  YLTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 75

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA   +++A+ + L  ++ VSS           SI +   E+L+A 
Sbjct: 76  YDEGKLSKLRASIVSAHGFTKLAKAISLQDYLHVSSSEEISKGREKPSILSSAFEALMAG 135

Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YL+ G+      + K   +    L       D KT LQE   A+F V P Y++    GP
Sbjct: 136 VYLEAGLAKVRKIIQKLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKEKGP 195

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           DH   F + + I     A     SK+ AEQ  A + L++ 
Sbjct: 196 DHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKL 235


>gi|28378329|ref|NP_785221.1| ribonuclease III [Lactobacillus plantarum WCFS1]
 gi|254556537|ref|YP_003062954.1| ribonuclease III [Lactobacillus plantarum JDM1]
 gi|300767266|ref|ZP_07077178.1| ribonuclease III [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308180480|ref|YP_003924608.1| ribonuclease III [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|38258332|sp|Q88WK0|RNC_LACPL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|28271164|emb|CAD64069.1| ribonuclease III [Lactobacillus plantarum WCFS1]
 gi|254045464|gb|ACT62257.1| ribonuclease III [Lactobacillus plantarum JDM1]
 gi|300495085|gb|EFK30241.1| ribonuclease III [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308045971|gb|ADN98514.1| ribonuclease III [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 231

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 114/229 (49%), Gaps = 7/229 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLIS 56
           M     + L++R G  F +  LL +A T +S  + +Q+     YER+EFLGD +L L++S
Sbjct: 1   MITELAAMLKERFGIVFNDPDLLAEAFTQASYVNEHQDQQLKYYERVEFLGDAVLELVVS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    +G+L+    ++V  E+ +  ARE D   +IR+    +K       S+  
Sbjct: 61  EYLYKRYKDMPQGKLTRLRAAMVCEESFASFARECDFPQYIRLGKGEQKAHAWERDSLLC 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPE 174
           D+ ES + ALYLD G E    FV +    + L  G+F    D KT LQE+      V  +
Sbjct: 121 DIFESFVGALYLDQGREPVLKFVHQVIFPK-LDEGRFDGVFDYKTTLQEYLQRDGDVAID 179

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           Y++  + GP ++  + + V   G    +G   SK+ AEQ AA +   + 
Sbjct: 180 YQLIEQDGPANERSYEIAVLADGQKIGEGWGHSKKEAEQSAARQAYSQL 228


>gi|83951643|ref|ZP_00960375.1| ribonuclease III [Roseovarius nubinhibens ISM]
 gi|83836649|gb|EAP75946.1| ribonuclease III [Roseovarius nubinhibens ISM]
          Length = 227

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 91/218 (41%), Positives = 124/218 (56%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           +        R+G+ F   +LL +ALTHSS+S   ++  +RLEFLGDR+LGL++S  L  H
Sbjct: 4   SAEIKAFAARLGHEFQTPALLVQALTHSSMSTPNRDDNQRLEFLGDRVLGLVMSEALLEH 63

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
              A EG L+ RFN+LV  ETC+ VAR++DL + +++             ++  D +E++
Sbjct: 64  DRKAAEGTLAPRFNALVRKETCADVARQIDLGAVLKLGRSEMLSGGRRKQALLGDAMEAV 123

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           IAA+YLD G E A T V   W  R  +     RDAKT LQEWA A+    P Y+   RSG
Sbjct: 124 IAAVYLDAGFETARTVVLALWGDRITRVEADARDAKTALQEWAQARGLAPPRYEEVARSG 183

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           PDH P FT+V  +     A     SKR AEQ AA  +L
Sbjct: 184 PDHAPEFTIVARLETGEEAASKAGSKRQAEQAAAKALL 221


>gi|241662605|ref|YP_002980965.1| ribonuclease III [Ralstonia pickettii 12D]
 gi|309781187|ref|ZP_07675924.1| ribonuclease III [Ralstonia sp. 5_7_47FAA]
 gi|240864632|gb|ACS62293.1| ribonuclease III [Ralstonia pickettii 12D]
 gi|308920008|gb|EFP65668.1| ribonuclease III [Ralstonia sp. 5_7_47FAA]
          Length = 256

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 74/221 (33%), Positives = 108/221 (48%), Gaps = 6/221 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +    L++R+GY F+   LL++ALTH S         ERLEFLGD IL   ++ +L+  F
Sbjct: 1   MSLDALQQRLGYRFSKPELLQQALTHRS---HSAMHNERLEFLGDSILNCAVADMLYGMF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  +   ++A+ L L   +R+     K       SI AD +E++ 
Sbjct: 58  GKLDEGDLSRVRANLVKQQALYEIAQMLQLPDALRLGEGELKSGGFRRPSILADALEAIF 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG + A T + K +      +      +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFDAARTLIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPLYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221
           G  H+ +F V   I  L     G   S+RAAEQ AA   L+
Sbjct: 178 GAAHNQQFEVECSIPKLEIRVSGSGASRRAAEQSAAKLALE 218


>gi|260881779|ref|ZP_05893556.1| ribonuclease III [Mitsuokella multacida DSM 20544]
 gi|260847870|gb|EEX67877.1| ribonuclease III [Mitsuokella multacida DSM 20544]
          Length = 247

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 76/219 (34%), Positives = 116/219 (52%), Gaps = 5/219 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTLLFNHFDS 65
           L +R+G  F + +LL++ALTH+S ++  + +    ERLEFLGD +L L  ST L+ HF  
Sbjct: 20  LSERLGVTFHDIALLDQALTHTSYANESKRNTAHNERLEFLGDAVLELASSTYLYEHFPE 79

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGEL+    S+V + T +++A  L L  ++ +             +   DV E++I A
Sbjct: 80  MPEGELTKTRASIVCSTTLAKLATGLHLGDYLLLGRGEEMGGGRTRQTNLEDVFEAVIGA 139

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YLD G E A  +V +  +     +  G   +D KT LQE    K G +  Y++   SGP
Sbjct: 140 VYLDQGWEAAQAYVVRQLRGEFENAEHGAILKDYKTILQEIVFRKEGQSIAYELVSESGP 199

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           DH   FT  V ++G    +G   SK+ AEQ AA   L++
Sbjct: 200 DHAKEFTFRVRVTGKVMGEGTGHSKKEAEQHAARRALEK 238


>gi|294340985|emb|CAZ89380.1| Ribonuclease III (RNase III) [Thiomonas sp. 3As]
          Length = 276

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 79/221 (35%), Positives = 117/221 (52%), Gaps = 6/221 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + LE R+GY F +R L E+ALTH S      +  ERLEFLGD +L L  +  L++     
Sbjct: 3   TALETRLGYVFRDRKLFERALTHRSFG---ADHNERLEFLGDSVLNLSAAAWLYHQAARQ 59

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+LS    +LV AE  ++VAR +DL  F+R+     +   +   SI AD VE+L+ A+
Sbjct: 60  DEGQLSRLRAALVRAEALAEVARAIDLGRFLRLGEGELQSGGAQRESILADTVEALLGAI 119

Query: 127 YLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YL+ G + A   + + +      L +   R+DAKT+LQE+   +    P Y V    G  
Sbjct: 120 YLEAGFDTAQEVMRRLFAPLMDTLDADVVRKDAKTQLQEFLQGQRLPLPSYAVLDVRGAA 179

Query: 185 HDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREG 224
           H  +F V   +  L    +G   S+R AEQ AA  +++R G
Sbjct: 180 HQQQFKVECAVEALGLKVEGEGDSRRRAEQDAATRMIERIG 220


>gi|239928705|ref|ZP_04685658.1| ribonuclease III [Streptomyces ghanaensis ATCC 14672]
 gi|291437029|ref|ZP_06576419.1| ribonuclease III [Streptomyces ghanaensis ATCC 14672]
 gi|291339924|gb|EFE66880.1| ribonuclease III [Streptomyces ghanaensis ATCC 14672]
          Length = 286

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 79/223 (35%), Positives = 117/223 (52%), Gaps = 6/223 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLF 60
           A  ++ LE R+GY     +LL +ALTH S ++      + ERLEFLGD +LGL+++  L+
Sbjct: 27  ASSHTLLEGRLGYQ-VESALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLY 85

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                  EG+L+    ++V++   ++V R LDL SFIR+             SI AD +E
Sbjct: 86  RTHPDLPEGQLAKLRAAVVNSRALAEVGRGLDLGSFIRLGRGEEGTGGRDKASILADTLE 145

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD G++ A   V + +     KS       D KT LQE    +    PEY VT
Sbjct: 146 AVIGAVYLDQGLDSAAELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLVT 205

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             +GPDH+  FT    + G++   G   SK+ AEQ AA    +
Sbjct: 206 -ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWR 247


>gi|108563072|ref|YP_627388.1| ribonuclease III [Helicobacter pylori HPAG1]
 gi|107836845|gb|ABF84714.1| ribonuclease III [Helicobacter pylori HPAG1]
          Length = 240

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 79/220 (35%), Positives = 115/220 (52%), Gaps = 4/220 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y+TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++ F  
Sbjct: 19  YTTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 76

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA   +++A+ + L  ++RVSS           SI +   E+L+A 
Sbjct: 77  YDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRVSSSEEISNGREKPSILSSAFEALMAG 136

Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YL+ G+      +     +    L       D KT LQE   A+F V P Y++    GP
Sbjct: 137 VYLEAGLAKVRKIMQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLQEKGP 196

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           DH   F + + I     A     SK+ AEQ  A   L++ 
Sbjct: 197 DHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYYALQKL 236


>gi|255019675|ref|ZP_05291754.1| Ribonuclease III [Acidithiobacillus caldus ATCC 51756]
 gi|254970898|gb|EET28381.1| Ribonuclease III [Acidithiobacillus caldus ATCC 51756]
          Length = 232

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 73/221 (33%), Positives = 107/221 (48%), Gaps = 5/221 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               L++ IGY F +  LL +ALTH S    +    ERLEFLGD  L  +++  L+  F 
Sbjct: 3   SLERLQQAIGYVFQDEVLLRQALTHRSAGAQH---NERLEFLGDAALNFVVAAELYARFP 59

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG LS     LV  ET +QVA E+ LA  + +     +   +   SI+AD +E++I 
Sbjct: 60  KVSEGNLSRMRARLVREETLAQVAGEIALADSLILGPGELRSGGARRDSIRADALEAIIG 119

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A YLDGG   A   V +       ++   +  RD KT LQE+   +    P Y +    G
Sbjct: 120 AAYLDGGFAAAQGIVRQLIVPLMTEALGDEELRDPKTRLQEFLQGQGKPLPSYSLVEEKG 179

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             H+ RF     + G+        S+R AEQ AA ++L++ 
Sbjct: 180 QAHERRFVARCSVQGVPATDAEAGSRRKAEQQAAQQMLEQL 220


>gi|261839511|gb|ACX99276.1| ribonuclease III [Helicobacter pylori 52]
          Length = 239

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 115/221 (52%), Gaps = 4/221 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++ F 
Sbjct: 17  SYITLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFY 74

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+LS    ++VSA   +++A+ + L  ++RVSS           SI +   E+L+A
Sbjct: 75  QYDEGKLSKLRAAIVSAHGFTKLAKIIALQDYLRVSSSEEISNGREKPSILSSAFEALMA 134

Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
            +YL+ G+      +     +    L       D KT LQE   A+F V P Y++    G
Sbjct: 135 GVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKEKG 194

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           PDH   F + + I     A     SK+ AEQ  A + L++ 
Sbjct: 195 PDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKL 235


>gi|222824476|ref|YP_002576050.1| ribonuclease III [Campylobacter lari RM2100]
 gi|222539697|gb|ACM64798.1| ribonuclease III [Campylobacter lari RM2100]
          Length = 222

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 74/221 (33%), Positives = 113/221 (51%), Gaps = 4/221 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              L++R+ Y F N  LL +ALTH S    Y  + ERLEFLGD ++ L++   LF  F  
Sbjct: 2   LKKLQERLNYHFKNEQLLIEALTHKSYKKPY--NNERLEFLGDAVMDLVVGEFLFFKFQK 59

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG LS    +LV+ ++ + +A++LDL   I +S     +      SI +D  E+L+ A
Sbjct: 60  ESEGNLSKLRAALVNEKSFANLAQKLDLGECIFMSIAEENNDGRNKPSILSDAFEALMGA 119

Query: 126 LYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YL+ G E           +    + +    +D KT+LQE   A    TPEY V    GP
Sbjct: 120 MYLEIGFEKTKNIALNLLNEVYPHIDTQSLFKDYKTKLQEITQANMAGTPEYIVVNAFGP 179

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           DH  +F + ++I G   A+ +  SK+ A+Q  A   L++ G
Sbjct: 180 DHKKQFEIAIKIQGKEFARAIAGSKKEAQQQCAKIALEKLG 220


>gi|15645286|ref|NP_207456.1| ribonuclease III [Helicobacter pylori 26695]
 gi|2313785|gb|AAD07725.1| ribonuclease III (rnc) [Helicobacter pylori 26695]
          Length = 240

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 79/221 (35%), Positives = 116/221 (52%), Gaps = 4/221 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y+TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++ F 
Sbjct: 18  SYTTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFY 75

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+LS    S+VSA   +++A+ + L  ++RVSS           SI +   E+L+A
Sbjct: 76  QYDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRVSSSEEISNGREKPSILSSAFEALMA 135

Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
            +YL+ G+      +     +    L       D KT LQE   A+F V P Y++    G
Sbjct: 136 GVYLEAGLAKVQKIMQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKEKG 195

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           PDH   F + + I     A     SK+ AEQ  A + L++ 
Sbjct: 196 PDHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQALQKL 236


>gi|262368562|ref|ZP_06061891.1| dsRNA-specific ribonuclease [Acinetobacter johnsonii SH046]
 gi|262316240|gb|EEY97278.1| dsRNA-specific ribonuclease [Acinetobacter johnsonii SH046]
          Length = 230

 Score =  246 bits (629), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 81/223 (36%), Positives = 121/223 (54%), Gaps = 5/223 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           S L  + L  RIGY F    LL+ ALTH S+SH Y  +YERLEFLGD +LG++I+  L+ 
Sbjct: 6   SKLSEARLASRIGYQFKQPELLQLALTHRSVSHKY--NYERLEFLGDSLLGMIIANYLYK 63

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EG L+    +LV  E   ++A +L L+  + +S+   K       SI AD VES
Sbjct: 64  AYPTENEGRLTRMRATLVRQEALGKIANDLKLSQSLILSTGELKSGGHHRESILADTVES 123

Query: 122 LIAALYLD-GGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +I A+Y+D   + V    V K+++     ++     +D K+ LQE+  A+    P Y V 
Sbjct: 124 IIGAIYVDCSDLTVLEPIVLKWYEPYLDHIEPTDQLKDPKSRLQEYLQARKKALPVYDVV 183

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              G   +  F V  ++ GL+   G   S+R AEQ AAA++LK
Sbjct: 184 DIQGDAPNQHFKVECKVDGLSVVNGEGTSRRFAEQAAAADILK 226


>gi|330957807|gb|EGH58067.1| ribonuclease III [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 229

 Score =  246 bits (629), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 79/214 (36%), Positives = 112/214 (52%), Gaps = 6/214 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           ++  S LE+++GY F ++ L+  ALTH S +     + ERLEFLGD IL  +    LF  
Sbjct: 2   SVSLSRLERQLGYTFKDQELMVLALTHRSFA---GRNNERLEFLGDAILNFVAGEALFER 58

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F  A+EG+LS     LV  ET + +AR  DL  ++R+ S   K       SI AD +E+L
Sbjct: 59  FPQAREGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADALEAL 118

Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           I A+YLD G+E A   V  +      +L      +D KT LQE+  ++    P Y+V   
Sbjct: 119 IGAIYLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACDLPRYEVVDI 178

Query: 181 SGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213
            G  H   F V  EI+ L   ++G   S+R AEQ
Sbjct: 179 QGEPHCRTFFVECEINLLNEKSRGQGVSRRIAEQ 212


>gi|261408033|ref|YP_003244274.1| ribonuclease III [Paenibacillus sp. Y412MC10]
 gi|329929588|ref|ZP_08283295.1| ribonuclease III [Paenibacillus sp. HGF5]
 gi|261284496|gb|ACX66467.1| ribonuclease III [Paenibacillus sp. Y412MC10]
 gi|328936233|gb|EGG32685.1| ribonuclease III [Paenibacillus sp. HGF5]
          Length = 233

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 64/214 (29%), Positives = 100/214 (46%), Gaps = 5/214 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M +     L+ ++   F N  LL++A TH+S  + ++    +  ERLEFLGD +L L +S
Sbjct: 1   MLSGDLKQLQHKLQIQFRNAMLLKQAFTHASYVNEHRFSQSQDNERLEFLGDAVLELTVS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+N F    EGEL+    ++V   +  Q A  LD   ++ +             ++ A
Sbjct: 61  EFLYNLFPDRPEGELTKLRAAIVCEPSLVQFAVSLDFGRYVLLGKGEEMTGGRTRPALLA 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEY 175
           DV ES + ALYLD G+E    F+  +       +G+ +  D KTELQE          EY
Sbjct: 121 DVFESFVGALYLDQGLEAVRRFLSDHVFPTVTVNGRPQMSDYKTELQELTQHHGMGALEY 180

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           ++    GP H+  F   V +      +G   SK+
Sbjct: 181 RIVEERGPAHEREFVSEVYMGSECLGRGSGRSKK 214


>gi|300704607|ref|YP_003746210.1| ribonuclease III (RNAse III) [Ralstonia solanacearum CFBP2957]
 gi|299072271|emb|CBJ43604.1| Ribonuclease III (RNase III) [Ralstonia solanacearum CFBP2957]
          Length = 256

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 75/221 (33%), Positives = 113/221 (51%), Gaps = 6/221 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +    L++R+GY F+ + LL++ALTH S S ++    ERLEFLGD IL   ++ +L+  F
Sbjct: 1   MSLDALQQRLGYRFSKQELLQQALTHRSHSATH---NERLEFLGDSILNCAVADMLYGMF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  +   ++A+ L L   +R+     K       SI AD +E++ 
Sbjct: 58  GKLDEGDLSRVRANLVKQQALYEIAQMLQLPDALRLGEGELKSGGFRRPSILADALEAIF 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG + A T + K +      +      +DAKT LQE+        P+Y V    
Sbjct: 118 GAVFLDGGFDAARTLIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYAVVATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221
           G  H+ +F V   I  L     G   S+RAAEQ AA   L+
Sbjct: 178 GAAHNQQFEVECTIPKLEIRVSGSGASRRAAEQSAAKLALE 218


>gi|297617466|ref|YP_003702625.1| ribonuclease III [Syntrophothermus lipocalidus DSM 12680]
 gi|297145303|gb|ADI02060.1| ribonuclease III [Syntrophothermus lipocalidus DSM 12680]
          Length = 232

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 106/206 (51%), Gaps = 3/206 (1%)

Query: 19  NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           +  LL KALTH S S   +  E+ +RLEFLGD +L ++++  L+ +F    EG+L+    
Sbjct: 21  DTGLLTKALTHPSYSQENEAVENNQRLEFLGDAVLNMVVAEYLYKNFPERPEGDLTRIRA 80

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
            +V  +   +VA  L +  ++ +             SI AD VE+++ A+YLD G+E A 
Sbjct: 81  KVVCEKALVKVANTLKVGEYLYLGRGEELSGGRKRNSILADTVEAVVGAVYLDQGLEYAR 140

Query: 137 TFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
            F+ +Y  Q   + +     D K++LQE   ++      Y +   SGP HD  F   V  
Sbjct: 141 DFILRYLAQDIHEVAEGNFYDYKSQLQELVQSRGKDNVTYAILEESGPAHDKTFIAGVFY 200

Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLK 221
                AQG+  SK+ AEQ AA +VL+
Sbjct: 201 RHKLLAQGVGKSKKEAEQKAAEKVLQ 226


>gi|153871985|ref|ZP_02001008.1| Ribonuclease III [Beggiatoa sp. PS]
 gi|152071548|gb|EDN68991.1| Ribonuclease III [Beggiatoa sp. PS]
          Length = 225

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 77/227 (33%), Positives = 118/227 (51%), Gaps = 6/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+   Y+ L + +GY F     L  ALTH S+   +    ERLEFLGD +L  + + +L+
Sbjct: 1   MN-QDYNHLCQALGYHFKQPEHLTTALTHRSVGTPH---NERLEFLGDALLNCITAKMLY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F SA+EG+L+    +LV  +T  ++A+ L+L  ++R+     K   +  TS  AD VE
Sbjct: 57  ERFPSAREGQLTRLRANLVKRDTLVKIAQRLELGKYLRLGDGEIKSGGAKRTSTLADAVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           ++I A+YLD  ++     +   W++   K S +  +D KT LQE+   +    P Y+V  
Sbjct: 117 AIIGAIYLDSDMKTCQAVILPIWQESLSKLSLEKIKDPKTRLQEYLQERQQTLPIYRVLS 176

Query: 180 RSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            SG  H+  F V   I     P  G   S+R AEQ AAA+VL    +
Sbjct: 177 TSGTPHEQHFEVECRIPYLKEPTYGSGHSRRRAEQSAAAKVLSILNV 223


>gi|188527489|ref|YP_001910176.1| ribonuclease III [Helicobacter pylori Shi470]
 gi|238691923|sp|B2UTG4|RNC_HELPS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|188143729|gb|ACD48146.1| ribonuclease III [Helicobacter pylori Shi470]
          Length = 238

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 77/220 (35%), Positives = 115/220 (52%), Gaps = 4/220 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y+TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++ F  
Sbjct: 17  YATLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 74

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA   +++A+ + L  ++ +SS           SI +   E+L+A 
Sbjct: 75  YDEGKLSKLRASIVSAHGFTKLAKVIALQDYLHISSSEEISNGREKPSILSSAFEALMAG 134

Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YL+ G+      +     +    L       D KT LQE   A+F V P Y++    GP
Sbjct: 135 VYLEAGLAKVQKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKEKGP 194

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           DH   F + + I     A     SK+ AEQ  A + L++ 
Sbjct: 195 DHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKL 234


>gi|313896309|ref|ZP_07829862.1| ribonuclease III [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320529287|ref|ZP_08030377.1| ribonuclease III [Selenomonas artemidis F0399]
 gi|312975108|gb|EFR40570.1| ribonuclease III [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320138461|gb|EFW30353.1| ribonuclease III [Selenomonas artemidis F0399]
          Length = 238

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 85/232 (36%), Positives = 126/232 (54%), Gaps = 8/232 (3%)

Query: 1   MSALRYSTLEKR---IGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLL 54
           +S  R + LE+    +G AF+N +LL++ALTH S ++  ++S    ERLEFLGD +L L 
Sbjct: 5   LSPARRAELERLAAHMGVAFSNIALLDEALTHPSYANESRDSIPHNERLEFLGDAVLELA 64

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
            ST L+ HF    EGEL+    SLV ++T +++AR L L   +R+     +   +   + 
Sbjct: 65  SSTYLYKHFPQCSEGELTKMRASLVQSDTLARLARRLHLGRHLRLGHGELRGGGADRQNN 124

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVT 172
             +V E++I A+YLD G E A  +V          ++  + R D KT LQE       ++
Sbjct: 125 LENVFEAVIGAVYLDRGWESARDYVCTQLVPEIGNVQPAQVRCDYKTTLQEHVQKDRHMS 184

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             Y++   SGPDHD RFT  V + G    +G   SK+ AEQ AAA  L + G
Sbjct: 185 VAYELVGESGPDHDKRFTTRVLVGGETLGEGTGPSKKKAEQQAAAHALSKLG 236


>gi|153816163|ref|ZP_01968831.1| hypothetical protein RUMTOR_02411 [Ruminococcus torques ATCC 27756]
 gi|317500483|ref|ZP_07958707.1| ribonuclease III [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089416|ref|ZP_08338315.1| ribonuclease III [Lachnospiraceae bacterium 3_1_46FAA]
 gi|145846498|gb|EDK23416.1| hypothetical protein RUMTOR_02411 [Ruminococcus torques ATCC 27756]
 gi|316898238|gb|EFV20285.1| ribonuclease III [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330404784|gb|EGG84322.1| ribonuclease III [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 228

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 72/209 (34%), Positives = 112/209 (53%), Gaps = 5/209 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           +   LE++IGY F N S LE+A+ HSS ++ ++       ERLEFLGD +L L+ S  LF
Sbjct: 4   KLKELEQKIGYRFRNFSFLEQAMMHSSYTNEHRMEKYRCNERLEFLGDAVLELISSEFLF 63

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                  EGEL+    S+V  ++ +  AR++DL S++ +          F  S+ +D +E
Sbjct: 64  RQSPKVPEGELTKTRASMVCEQSLAMCARDIDLGSYLLLGKGEEVTGGRFRDSVTSDALE 123

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +LI A+YLDGG   A  F+ ++      +  K   D+KT LQE   A+     EY +   
Sbjct: 124 ALIGAIYLDGGFTNAKEFIHRFVLTDQ-EDKKLFYDSKTILQEIVQAEKLGEIEYHLIGE 182

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            GPDH+  F+V + I G +  +G   +K+
Sbjct: 183 EGPDHNKSFSVELTIRGRSYGKGKGRTKK 211


>gi|7531276|sp|P56118|RNC_HELPY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
          Length = 239

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 79/221 (35%), Positives = 116/221 (52%), Gaps = 4/221 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y+TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++ F 
Sbjct: 17  SYTTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFY 74

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+LS    S+VSA   +++A+ + L  ++RVSS           SI +   E+L+A
Sbjct: 75  QYDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRVSSSEEISNGREKPSILSSAFEALMA 134

Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
            +YL+ G+      +     +    L       D KT LQE   A+F V P Y++    G
Sbjct: 135 GVYLEAGLAKVQKIMQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKEKG 194

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           PDH   F + + I     A     SK+ AEQ  A + L++ 
Sbjct: 195 PDHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQALQKL 235


>gi|121613213|ref|YP_001001278.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 81-176]
 gi|121504230|gb|EAQ72743.2| ribonuclease III [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 225

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 123/222 (55%), Gaps = 4/222 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               LE+ + Y F +++LL  ALTH S   SY  + ERLEFLGD +L L++   LF+ F 
Sbjct: 4   NIEKLERSLTYEFKDKNLLIHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLFHKFA 61

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+LS    +LV+ ++ +++A  L+L  FI +S     +      SI +D +E++I 
Sbjct: 62  KDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGKEKPSILSDALEAIIG 121

Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A++L+ G E A T   +  ++    + +    +D KT+LQE    K G TP+Y+     G
Sbjct: 122 AIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFG 181

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           PDH  +F + + + G   A+ +  SK+ A+Q+AA   L++ G
Sbjct: 182 PDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 223


>gi|305432452|ref|ZP_07401614.1| ribonuclease III [Campylobacter coli JV20]
 gi|304444491|gb|EFM37142.1| ribonuclease III [Campylobacter coli JV20]
          Length = 225

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 72/222 (32%), Positives = 124/222 (55%), Gaps = 4/222 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               LE+++ Y F ++ LL  ALTH S    Y  + ERLEFLGD +L L++   LF+ F 
Sbjct: 4   NIELLEQKLAYKFKDKDLLIHALTHKSFKKPY--NNERLEFLGDAVLDLVVGEYLFHKFA 61

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+LS    +LV+ ++ +++A  L+L  FI +S+    +      SI +D +E+++ 
Sbjct: 62  KDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSAAEENNGGKEKPSILSDALEAIMG 121

Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A++L+ G + A     K  ++    + +    +D KT+LQE   AK G TP+Y+     G
Sbjct: 122 AIHLEAGFDFARNIALKLIEKNFPQIDAKNLIKDYKTKLQEITQAKLGQTPQYETVRAFG 181

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           PDH  +F + + ++G   A+ +  +K+ A+Q+AA   L++ G
Sbjct: 182 PDHLKQFEIALFLNGQELARAIAGNKKEAQQMAAKITLEKLG 223


>gi|218885347|ref|YP_002434668.1| ribonuclease III [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|226735370|sp|B8DPB3|RNC_DESVM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|218756301|gb|ACL07200.1| Ribonuclease III [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 230

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 115/223 (51%), Gaps = 5/223 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLFNH 62
           +  L+  I YAF +  LL  A+THSS ++    + E  ERLEFLGD +L L +S  LF  
Sbjct: 2   FEKLQSDIHYAFNDAGLLATAMTHSSWANEQQEHVEHNERLEFLGDAVLELCVSEELFAR 61

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F  A+EG+L+     LVS    +++AR+L L  ++R+            +S+ +D +E++
Sbjct: 62  FPGAREGDLTRMRARLVSKPALAELARDLQLELYLRLGRGEESQGGRERSSLLSDALEAM 121

Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           + A++LDGG E A   V      R      GK  +D K+ LQE   + F   P Y +   
Sbjct: 122 LGAVFLDGGYERARAVVRHVLAARWPCDADGKRSKDYKSRLQELTQSLFRERPVYALMGS 181

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           SGP+H+ RF V + +        +  S + AEQ+AA   LK  
Sbjct: 182 SGPEHEKRFEVRLTLPDGTVFTAIGPSVKRAEQMAAGLALKNL 224


>gi|114770106|ref|ZP_01447644.1| Ribonuclease III [alpha proteobacterium HTCC2255]
 gi|114548943|gb|EAU51826.1| Ribonuclease III [alpha proteobacterium HTCC2255]
          Length = 226

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 90/222 (40%), Positives = 126/222 (56%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
            +   +   KR+GY F    LL +A+THSS+S + +   +R EFLGDR+LGL IS  LF+
Sbjct: 3   PSAELTAFSKRLGYDFQKPELLIQAMTHSSLSSTTRGDNQRFEFLGDRVLGLSISDALFH 62

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
               A EG L+ RFN+LV  ETC+++A E+ L   +++             ++  D +E+
Sbjct: 63  KDSDASEGLLAPRFNALVRKETCAEIAIEIKLGEALKMGRSEMLSGGRRKIAVLGDAMEA 122

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +I A+YLD G E+A   V + W      +    RD+KT LQEWA AK   TP+Y    RS
Sbjct: 123 VIGAVYLDAGFEIARDMVIRLWSNHIDNAAHDARDSKTILQEWAQAKKLPTPKYIEVDRS 182

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           GPDH P FT+ V I     A+    SKRAA Q AAA++L + 
Sbjct: 183 GPDHAPIFTIEVSIETGQSAKAQAQSKRAASQDAAADLLGQL 224


>gi|157415855|ref|YP_001483111.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 81116]
 gi|283957021|ref|ZP_06374493.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1336]
 gi|189043300|sp|A8FNU7|RNC_CAMJ8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|157386819|gb|ABV53134.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 81116]
 gi|283791522|gb|EFC30319.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1336]
 gi|307748491|gb|ADN91761.1| Ribonuclease 3 [Campylobacter jejuni subsp. jejuni M1]
 gi|315931680|gb|EFV10641.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 327]
          Length = 224

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 123/222 (55%), Gaps = 4/222 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               LE+ + Y F +++LL  ALTH S   SY  + ERLEFLGD +L L++   LF+ F 
Sbjct: 3   NIEKLEQSLTYEFKDKNLLIHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLFHKFA 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+LS    +LV+ ++ +++A  L+L  FI +S     +      SI +D +E++I 
Sbjct: 61  KDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGKEKPSILSDALEAIIG 120

Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A++L+ G E A T   +  ++    + +    +D KT+LQE    K G TP+Y+     G
Sbjct: 121 AIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFG 180

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           PDH  +F + + + G   A+ +  SK+ A+Q+AA   L++ G
Sbjct: 181 PDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 222


>gi|212212136|ref|YP_002303072.1| ribonuclease III [Coxiella burnetii CbuG_Q212]
 gi|226741368|sp|B6IYZ9|RNC_COXB2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|212010546|gb|ACJ17927.1| ribonuclease III [Coxiella burnetii CbuG_Q212]
          Length = 233

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 73/219 (33%), Positives = 125/219 (57%), Gaps = 7/219 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            + L +R+G+ F N  LL+ ALTH S   S  ++ ERLEFLGD +LG +I++ L+     
Sbjct: 4   LNKLMERLGHQFNNLELLKIALTHRS---SGADNNERLEFLGDSVLGFIIASELYQRRPQ 60

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A+EG+LS    S+V+ +  +Q++ +L +  ++++    +K       SI AD +E+++ +
Sbjct: 61  AREGDLSRMRASMVNGDELAQMSTKLGINEYLQLGVGEQKSGGKRRRSILADALEAIVGS 120

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +Y+D G+E     V  ++ +R     K   ++DAK+ LQEW  A+    P Y+V   +G 
Sbjct: 121 IYIDAGLETCRRCVLNWYGERVDDLSKLSPKKDAKSLLQEWLQARRLPLPTYEV-KITGE 179

Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221
            H   FTV   + GL    +G++ ++R AEQ+AA   L+
Sbjct: 180 AHAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAKRFLE 218


>gi|226940389|ref|YP_002795463.1| ribonuclease III [Laribacter hongkongensis HLHK9]
 gi|226715316|gb|ACO74454.1| Rnc [Laribacter hongkongensis HLHK9]
          Length = 238

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 117/223 (52%), Gaps = 6/223 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +      L + IG+ F + +LL++ALTH S     Q + ER EF+GD IL   I+ +LF+
Sbjct: 3   TPQPIDRLMQHIGHLFTSPALLKEALTHRSYG---QPNNERFEFVGDGILNYTIARMLFD 59

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F    EG+LS    +LV+  T +++AREL L   + +    RK       SI AD +E+
Sbjct: 60  AFPELSEGQLSRLRANLVNQATLAEIARELTLGDCLFLGDGERKSGGHDRPSILADAMEA 119

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + AA+ LD    VA   V + +  R   +   +  +DAKT LQE   A+    P Y++  
Sbjct: 120 IFAAVCLDADFAVAENVVRRLYAARVAGIDLNRQAKDAKTRLQEMLQARRLPLPAYRILN 179

Query: 180 RSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLK 221
           +SG  H  +F V  +I  L  A  G   S+RAAEQ+AA   ++
Sbjct: 180 QSGDAHLSQFEVACDIPQLGLATCGEGSSRRAAEQLAAERAIE 222


>gi|163790810|ref|ZP_02185235.1| Ribonuclease (RNase III) [Carnobacterium sp. AT7]
 gi|159873878|gb|EDP67957.1| Ribonuclease (RNase III) [Carnobacterium sp. AT7]
          Length = 231

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 115/226 (50%), Gaps = 7/226 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M     + L+ + G  F + S LE+A THSS  + ++    +  ER+EFLGD +L L +S
Sbjct: 1   MDEAFLTHLKTKFGLVFQDLSYLEEAFTHSSYVNEHRNLKLKDNERIEFLGDAVLELTVS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  + +  EG+L+    ++V   + SQ A+E +   FIR+     +       ++  
Sbjct: 61  RFLYELYPNVPEGKLTRLRATIVCEASFSQFAKEYEFDQFIRLGKGEERMNGRKRPALLC 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D+ ES + ALYLD G++    F+++    + +KSG F    D KT LQE+   K  +  E
Sbjct: 121 DLFESFVGALYLDQGLDGVLFFLEQTIFPK-IKSGAFSHVMDHKTNLQEFLQQKGEIEIE 179

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           Y +    GP H   F V V   G    QG   +K+AAEQVAA   L
Sbjct: 180 YNLVDEIGPAHQKAFVVEVLAEGQLLGQGQGKTKKAAEQVAAENAL 225


>gi|146329595|ref|YP_001209601.1| ribonuclease III [Dichelobacter nodosus VCS1703A]
 gi|146233065|gb|ABQ14043.1| ribonuclease III [Dichelobacter nodosus VCS1703A]
          Length = 233

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 67/218 (30%), Positives = 108/218 (49%), Gaps = 6/218 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
             + +  LE  +GY+F N  LL++ALTH S S    +  ER E+LGD +L  +IS  L+ 
Sbjct: 5   PKINWQLLEHALGYSFQNPELLQRALTHRSFS---ADHNERFEYLGDALLETVISVALYR 61

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +  + EG+L+    ++V + + + +A++LDL  ++R+ S   K       SI AD VE+
Sbjct: 62  RYPESPEGDLTRLRAAIVKSSSLAVIAKQLDLGRYLRLGSGELKSGGKRRESILADAVEA 121

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTF 179
           +IAA+YLD             +             +D KT LQE+  ++    P Y++  
Sbjct: 122 IIAAVYLDSDFYRCEQITLALFAPAIAALPDVEALKDPKTRLQEYLQSRDLPLPVYELVE 181

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
             GP+H   FT+  + S          S++ AEQ AA 
Sbjct: 182 EKGPEHAKIFTISAK-SERFCTTATASSRKKAEQAAAE 218


>gi|222055246|ref|YP_002537608.1| Ribonuclease III [Geobacter sp. FRC-32]
 gi|221564535|gb|ACM20507.1| Ribonuclease III [Geobacter sp. FRC-32]
          Length = 238

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 84/227 (37%), Positives = 124/227 (54%), Gaps = 9/227 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLF 60
             + LEK I Y F ++SLL +ALTH S  +      ++  +RLEFLGD ++GL++S  LF
Sbjct: 8   SIAALEKLINYDFTDKSLLVEALTHPSFVNESGGKVRQDNQRLEFLGDAVVGLVLSHDLF 67

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F  ++EGEL+    SLV   + + +AR +DL + +++     +       S+ AD  E
Sbjct: 68  SRFPDSREGELTKLRASLVDEASLAILARAIDLGAHLKLGRGEERSGGRTKPSLLADAYE 127

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +L+AA+YLDGGIE A   +  ++     K       RD KTE QE AH    + P Y + 
Sbjct: 128 ALLAAVYLDGGIEPAAAIIKSHFASFMEKRNIRTSGRDFKTEFQELAHRLRSLAPRYLLQ 187

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE---VLKR 222
             SGPDH   F+V V I      +G+  SK+ AEQ AA +    LK+
Sbjct: 188 GVSGPDHQRIFSVAVFIGEEFMGEGLAKSKKEAEQAAAEQGIAFLKK 234


>gi|312959172|ref|ZP_07773691.1| Ribonuclease 3 [Pseudomonas fluorescens WH6]
 gi|311286942|gb|EFQ65504.1| Ribonuclease 3 [Pseudomonas fluorescens WH6]
          Length = 229

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 78/214 (36%), Positives = 109/214 (50%), Gaps = 6/214 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            +  S LE+++GY F ++ L+  ALTH S +     + ERLEFLGD IL  +    LF  
Sbjct: 2   TVSLSRLERQLGYTFKDQELMVLALTHRSFA---GRNNERLEFLGDAILNFVAGEALFER 58

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F  A+EG+LS     LV  ET + +AR   L  ++R+ S   K       SI AD +E+L
Sbjct: 59  FPQAREGQLSRLRARLVKGETLAVLARGFGLGEYLRLGSGELKSGGFRRESILADALEAL 118

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           I A+YLD G+E A   V  +       L      +D KT LQE+  ++    P Y+V   
Sbjct: 119 IGAIYLDAGMEAAKARVTAWLTSEIESLTLVDTNKDPKTRLQEFLQSRGCELPRYEVVDI 178

Query: 181 SGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213
            G  H   F V  EI+ L   ++G   S+R AEQ
Sbjct: 179 QGEPHCRVFFVECEITLLNEKSRGQGVSRRIAEQ 212


>gi|290957120|ref|YP_003488302.1| ribonuclease III [Streptomyces scabiei 87.22]
 gi|260646646|emb|CBG69743.1| putative ribonuclease III [Streptomyces scabiei 87.22]
          Length = 272

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 79/224 (35%), Positives = 119/224 (53%), Gaps = 6/224 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           +A  ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L
Sbjct: 17  TASSHTLLEGRLGYKLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 75

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +       EG+L+    ++V++   ++V R LDL SFIR+             SI AD +
Sbjct: 76  YRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLDLGSFIRLGRGEEGTGGRDKASILADTL 135

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD G++ A   V + +     KS       D KT LQE    +    PEY V
Sbjct: 136 EAVIGAVYLDQGLDSAAELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLV 195

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           T  +GPDH+  FT    + G++   G   SK+ AEQ AA    +
Sbjct: 196 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWR 238


>gi|90961602|ref|YP_535518.1| ribonuclease III [Lactobacillus salivarius UCC118]
 gi|301299302|ref|ZP_07205588.1| ribonuclease III [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|122449142|sp|Q1WUA0|RNC_LACS1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|90820796|gb|ABD99435.1| Ribonuclease III [Lactobacillus salivarius UCC118]
 gi|300214418|gb|ADJ78834.1| Ribonuclease 3 (Ribonuclease III) (RNase III) [Lactobacillus
           salivarius CECT 5713]
 gi|300853146|gb|EFK80744.1| ribonuclease III [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 232

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 110/230 (47%), Gaps = 7/230 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES------YERLEFLGDRILGLL 54
           M       L++     F +  LL+ A TH+S  +   E       YER+EFLGD ++ L 
Sbjct: 1   MIEGLQEMLKRDFNITFKDVDLLDAAFTHASYVNETPERKKKLKYYERIEFLGDAVMQLC 60

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
           +S  ++ H+    EG++S    ++V A++ S+ A E     +IR+     K       S+
Sbjct: 61  VSEYIYEHYPEMPEGKMSRLRAAMVRADSFSKFAIECHFNEYIRLGKGEEKGNARQRPSL 120

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTP 173
             D+ ES I ALYLD G +    F+ K    +  L       D KTELQE          
Sbjct: 121 LCDIFESFIGALYLDQGKDEVVRFISKVIFPKLELGWFDHMMDNKTELQEVLQQNGECKI 180

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +Y     +GPD++  +T+ V ++     +G   +K+AAEQ+AA + LK+ 
Sbjct: 181 KYNEVNVTGPDNERVYTMNVVVNNEVMGEGTGRTKKAAEQMAAYQALKKL 230


>gi|308068621|ref|YP_003870226.1| ribonuclease III [Paenibacillus polymyxa E681]
 gi|310641509|ref|YP_003946267.1| ribonuclease iii [Paenibacillus polymyxa SC2]
 gi|305857900|gb|ADM69688.1| Ribonuclease III (RNase III) [Paenibacillus polymyxa E681]
 gi|309246459|gb|ADO56026.1| Ribonuclease III [Paenibacillus polymyxa SC2]
          Length = 232

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 63/210 (30%), Positives = 104/210 (49%), Gaps = 5/210 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
               L++++   F NR LL++A TH+S  + ++       ERLEFLGD +L L +S  L+
Sbjct: 4   DLKQLQQKLHIQFNNRQLLKQAFTHASYVNEHRFSQHADNERLEFLGDAVLELTVSEQLY 63

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N + +  EGEL+    ++V   +  + A  L+   ++ +             ++ ADV E
Sbjct: 64  NQYPNRPEGELTKLRAAIVCEPSLVKFAVGLEFGQYVLLGKGEELTGGRTRPALLADVFE 123

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTF 179
           + + ALYLD G+E   +F+++Y   + + +GK +  D KTELQE          EYK+  
Sbjct: 124 AFVGALYLDQGLEAVRSFLERYIFPQIVLNGKLQMSDFKTELQELTQHHNMGMLEYKIVE 183

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
             GP H+  F   V +       G   SK+
Sbjct: 184 ERGPAHEREFVAEVYMDSERLGAGTGRSKK 213


>gi|57168805|ref|ZP_00367936.1| ribonuclease III Cj1635c [Campylobacter coli RM2228]
 gi|57019852|gb|EAL56535.1| ribonuclease III Cj1635c [Campylobacter coli RM2228]
          Length = 224

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 72/222 (32%), Positives = 124/222 (55%), Gaps = 4/222 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               LE+++ Y F ++ LL  ALTH S    Y  + ERLEFLGD +L L++   LF+ F 
Sbjct: 3   NIELLEQKLAYKFKDKDLLIHALTHKSFKKPY--NNERLEFLGDAVLDLVVGEYLFHKFA 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+LS    +LV+ ++ +++A  L+L  FI +S+    +      SI +D +E+++ 
Sbjct: 61  KDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSAAEENNGGKEKPSILSDALEAIMG 120

Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A++L+ G + A     K  ++    + +    +D KT+LQE   AK G TP+Y+     G
Sbjct: 121 AIHLEAGFDFARNIALKLIEKNFPQIDAKNLIKDYKTKLQEITQAKLGQTPQYETVRAFG 180

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           PDH  +F + + ++G   A+ +  +K+ A+Q+AA   L++ G
Sbjct: 181 PDHLKQFEIALFLNGQELARAIAGNKKEAQQMAAKITLEKLG 222


>gi|253573486|ref|ZP_04850829.1| ribonuclease III [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251847014|gb|EES75019.1| ribonuclease III [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 232

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 68/210 (32%), Positives = 101/210 (48%), Gaps = 5/210 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
               L++++  AF NR LL++A TH+S  + ++    E  ERLEFLGD +L L +S  L+
Sbjct: 4   DLKQLQQKLELAFQNRQLLKQAFTHASYVNEHRFSQYEDNERLEFLGDAVLELTVSEHLY 63

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EGEL+    ++V   +  + A  L+   ++ +             ++ ADV E
Sbjct: 64  RLFPDRPEGELTKLRAAIVCEPSLVKFAENLEFGKYVLLGKGEELTGGRTRPALLADVFE 123

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTF 179
           S I ALYLD G+E    F+ ++        GK    D KTELQE        T EY++  
Sbjct: 124 SFIGALYLDQGLEAVTAFLHRHVFPNLTLDGKLSTGDFKTELQELTQHHGMGTLEYRIIE 183

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
             GP H+  F   V + G    QG   SK+
Sbjct: 184 ERGPAHEREFVAEVRMDGRPLGQGTGRSKK 213


>gi|86152963|ref|ZP_01071168.1| ribonuclease III [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|167006173|ref|ZP_02271931.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 81-176]
 gi|85843848|gb|EAQ61058.1| ribonuclease III [Campylobacter jejuni subsp. jejuni HB93-13]
          Length = 224

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 123/222 (55%), Gaps = 4/222 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               LE+ + Y F +++LL  ALTH S   SY  + ERLEFLGD +L L++   LF+ F 
Sbjct: 3   NIEKLERSLTYEFKDKNLLIHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLFHKFA 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+LS    +LV+ ++ +++A  L+L  FI +S     +      SI +D +E++I 
Sbjct: 61  KDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGKEKPSILSDALEAIIG 120

Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A++L+ G E A T   +  ++    + +    +D KT+LQE    K G TP+Y+     G
Sbjct: 121 AIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFG 180

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           PDH  +F + + + G   A+ +  SK+ A+Q+AA   L++ G
Sbjct: 181 PDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 222


>gi|28871359|ref|NP_793978.1| ribonuclease III [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213971119|ref|ZP_03399238.1| ribonuclease III [Pseudomonas syringae pv. tomato T1]
 gi|237798713|ref|ZP_04587174.1| ribonuclease III [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|237806146|ref|ZP_04592850.1| ribonuclease III [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|301381864|ref|ZP_07230282.1| ribonuclease III [Pseudomonas syringae pv. tomato Max13]
 gi|302063246|ref|ZP_07254787.1| ribonuclease III [Pseudomonas syringae pv. tomato K40]
 gi|302132832|ref|ZP_07258822.1| ribonuclease III [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|37999381|sp|Q87XG1|RNC_PSESM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|28854610|gb|AAO57673.1| ribonuclease III [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213924108|gb|EEB57684.1| ribonuclease III [Pseudomonas syringae pv. tomato T1]
 gi|331015601|gb|EGH95657.1| ribonuclease III [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
 gi|331021566|gb|EGI01623.1| ribonuclease III [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331027259|gb|EGI07314.1| ribonuclease III [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 229

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 79/214 (36%), Positives = 112/214 (52%), Gaps = 6/214 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           ++  S LE+++GY F ++ L+  ALTH S +     + ERLEFLGD IL  +    LF  
Sbjct: 2   SVSLSRLERQLGYTFKDQELMILALTHRSFA---GRNNERLEFLGDAILNFVAGEALFER 58

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F  A+EG+LS     LV  ET + +AR  DL  ++R+ S   K       SI AD +E+L
Sbjct: 59  FPQAREGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADALEAL 118

Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           I A+YLD G+E A   V  +      +L      +D KT LQE+  ++    P Y+V   
Sbjct: 119 IGAIYLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACDLPRYEVVDI 178

Query: 181 SGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213
            G  H   F V  EI+ L   ++G   S+R AEQ
Sbjct: 179 QGEPHCRTFFVECEINLLNEKSRGQGVSRRIAEQ 212


>gi|319760660|ref|YP_004124598.1| ribonuclease III [Candidatus Blochmannia vafer str. BVAF]
 gi|318039374|gb|ADV33924.1| ribonuclease III [Candidatus Blochmannia vafer str. BVAF]
          Length = 231

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 122/224 (54%), Gaps = 6/224 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           MS+L ++ L+ ++GY F    LLE ALTH S S+ +    ERLEFLGD IL  +++ LL+
Sbjct: 1   MSSLDFNVLQGKLGYFFCKLDLLELALTHRSFSNQH---NERLEFLGDAILNYVVANLLY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + ++   EG++S   ++LV ++T  ++A+E ++  ++++     K+      SI ++ VE
Sbjct: 58  HRYNCISEGDMSRIRSNLVCSKTLVRLAKEFNVGEYLKLGQGELKNGGISRESILSNTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I  ++LD  ++     ++ ++     A+     ++D KT LQE+        P Y V 
Sbjct: 118 AIIGGVFLDSNMKTVEILINNWYLCHLNAINFMNKQKDPKTRLQEYLQRHGCPLPIYYVN 177

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221
              G  H   FT+  +IS L  P+ G   S + AEQ AA   LK
Sbjct: 178 RIQGKAHSQMFTIFCQISQLTDPSIGYGSSIQKAEQSAAENALK 221


>gi|283850854|ref|ZP_06368140.1| ribonuclease III [Desulfovibrio sp. FW1012B]
 gi|283573777|gb|EFC21751.1| ribonuclease III [Desulfovibrio sp. FW1012B]
          Length = 239

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 113/225 (50%), Gaps = 5/225 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFN 61
            ++ +++ +G+AFA   LL  ALTHSS ++   +     ERLEFLGD +L L +S  LF 
Sbjct: 4   SFAVVQEALGHAFARPELLTAALTHSSWANERGDALGHNERLEFLGDAVLELCVSEELFV 63

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F  A EGEL++  + LV+  + + +AR L L   + +             ++ +D  E+
Sbjct: 64  RFPEAPEGELTLLRSQLVNEGSLAAMARRLSLEEHVLLGKGEENQGGRTRPALLSDAFEA 123

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           +I A++LDGG   A  F+ + +        +    +D K+ LQE+        P Y +  
Sbjct: 124 VIGAIFLDGGYAAAKGFIIRAFAGSWPMRPAAPKTKDFKSRLQEYTQKAHKSRPVYSLLG 183

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             GP+HD RF V + +        ++ S + AEQ+AA   L+  G
Sbjct: 184 SEGPEHDKRFQVRLTLPDGQVITAVEKSVKKAEQMAALRALEALG 228


>gi|119953483|ref|YP_945692.1| ribonuclease III [Borrelia turicatae 91E135]
 gi|119862254|gb|AAX18022.1| ribonuclease III [Borrelia turicatae 91E135]
          Length = 244

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 119/223 (53%), Gaps = 5/223 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFN 61
           + +     +   F +  LL  +L+HSS ++ + +   + ERLEFLGD +L L+I+  L+ 
Sbjct: 16  KLNEFLLGLHIDFNDIDLLNMSLSHSSYANEFDQKYANNERLEFLGDSVLNLIITDYLYR 75

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +    EGELS   + +VS E+ S +AREL+L ++I +      +       I AD +E+
Sbjct: 76  FYPEKSEGELSKARSYIVSEESLSSIARELNLGNYILLGRGEENNDGRNKKGILADAIEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            + ALYLDGG      FV + ++   R + +    +D K+ LQE+   K+ ++P YK+  
Sbjct: 136 FVGALYLDGGFLKTLDFVIELFEVHIRLMFNRGDFKDYKSLLQEYVQKKYKISPTYKLAK 195

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             GPDH+  F V + ++    + G   SK+ AE +AA   LK 
Sbjct: 196 ELGPDHNKVFCVELYVNDKFISNGKGKSKKEAEMIAAEMALKN 238


>gi|307722018|ref|YP_003893158.1| RNAse III [Sulfurimonas autotrophica DSM 16294]
 gi|306980111|gb|ADN10146.1| RNAse III [Sulfurimonas autotrophica DSM 16294]
          Length = 227

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 79/224 (35%), Positives = 119/224 (53%), Gaps = 7/224 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
              TLE+++GY F ++ L+ +ALTH S    Y    ERLEFLGD +L L++   LF  F 
Sbjct: 4   NIKTLEEKLGYEFKDKKLIIEALTHKSYKQPY--DNERLEFLGDAVLDLVVGEYLFRKFR 61

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           ++ EG+LS    SLV+     ++AR L L  +I +S+    +     +S+ ++  E+++ 
Sbjct: 62  TSDEGKLSKIRASLVNETGFDKLARALHLGDYILLSNAEDNNGGREKSSLLSNAFEAIMG 121

Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YL+ G+           ++    +      RD KT LQE   A+FG+TPEYKV    G
Sbjct: 122 AVYLEAGLGEVQRIAIDLIEKNHEEISLDSLFRDFKTTLQELTQARFGITPEYKVLASRG 181

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA---EVLKRE 223
           PDH   F V V I     A+    SK+ A+Q AA    E+L +E
Sbjct: 182 PDHQKEFEVGVFIEDKEYARANGKSKKIAQQEAARVAVELLNKE 225


>gi|259046634|ref|ZP_05737035.1| ribonuclease III [Granulicatella adiacens ATCC 49175]
 gi|259036799|gb|EEW38054.1| ribonuclease III [Granulicatella adiacens ATCC 49175]
          Length = 236

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 69/220 (31%), Positives = 110/220 (50%), Gaps = 5/220 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           L+++   +F N +LL +A+THSS ++ ++E      ER+EFLGD +L L IS  LF  F 
Sbjct: 11  LKEKFDISFNNEALLMEAMTHSSYANEHKEMKGIYNERIEFLGDAVLELTISDWLFRQFP 70

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             +EG+L+     +V  ++ S +A+E  L  ++ +             +I  DV E+ I 
Sbjct: 71  HFQEGQLTKLRAQIVCEDSLSLLAKECSLNEYLLLGKGETLSGGREKPAILCDVFEAFIG 130

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           ALYLD G+     F++     +      +   D KTELQE+      V   Y++    GP
Sbjct: 131 ALYLDKGVNEVQRFLNLVVIPKIKNGRYELITDFKTELQEYLQQNGPVHIRYELVKEEGP 190

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            HD  FTV + + G         +K+AAEQ+AA   ++  
Sbjct: 191 SHDKTFTVQLIVDGKKYKTASGKTKKAAEQMAAKLTMEEL 230


>gi|187928023|ref|YP_001898510.1| ribonuclease III [Ralstonia pickettii 12J]
 gi|238691793|sp|B2U981|RNC_RALPJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|187724913|gb|ACD26078.1| Ribonuclease III [Ralstonia pickettii 12J]
          Length = 256

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 74/220 (33%), Positives = 107/220 (48%), Gaps = 6/220 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +    L++R+GY F+   LL++ALTH S         ERLEFLGD IL   ++ +L+  F
Sbjct: 1   MSLDALQQRLGYRFSKPELLQQALTHRS---HSAMHNERLEFLGDSILNCAVADMLYGMF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  +   ++A+ L L   +R+     K       SI AD +E++ 
Sbjct: 58  GKLDEGDLSRVRANLVKQQALYEIAQMLQLPDALRLGEGELKSGGFRRPSILADALEAIF 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG + A T + K +      +      +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFDAARTLIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPLYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVL 220
           G  H+ +F V   I  L     G   S+RAAEQ AA   L
Sbjct: 178 GAAHNQQFEVECSIPKLEIRVSGSGASRRAAEQSAAKLAL 217


>gi|319946572|ref|ZP_08020806.1| ribonuclease III [Streptococcus australis ATCC 700641]
 gi|319746620|gb|EFV98879.1| ribonuclease III [Streptococcus australis ATCC 700641]
          Length = 241

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 72/213 (33%), Positives = 108/213 (50%), Gaps = 8/213 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M AL Y+ L ++    F +  LLE A TH+S ++ ++       ERLEFLGD IL L+IS
Sbjct: 9   MQAL-YNLLAEKFRLTFDDTELLETAFTHTSYANEHRLLKISHNERLEFLGDAILQLVIS 67

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  + S  EG+LS   + +V  E+ +  +R+     FI++     K       +I  
Sbjct: 68  EYLFALYPSKPEGDLSKMRSMIVREESLAGFSRDCGFDQFIKLGKGEEKSGGRNRDTILG 127

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D+ E+ + AL LD G+E    F+ +    + +++G+F +  D KT LQE       V   
Sbjct: 128 DLFEAFLGALLLDKGVETVRDFIQQVMIPK-VEAGQFEQVIDYKTRLQEILQIHGDVLIT 186

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           Y+VT  SGP H   F V V ++G    QG   S
Sbjct: 187 YEVTSESGPAHAKEFEVQVSVNGKIIGQGRGRS 219


>gi|261855986|ref|YP_003263269.1| ribonuclease III [Halothiobacillus neapolitanus c2]
 gi|261836455|gb|ACX96222.1| ribonuclease III [Halothiobacillus neapolitanus c2]
          Length = 243

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 86/234 (36%), Positives = 118/234 (50%), Gaps = 14/234 (5%)

Query: 1   MSALRYS--------TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILG 52
           MSAL+ S         L + IG  FA+  LLE AL H S  +    + ERLEFLGD +L 
Sbjct: 1   MSALKPSSPFVTAPEKLAQHIGITFASPELLEMALRHRSAGN---MNNERLEFLGDAVLN 57

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
           L+I+  L+     A EGELS    SLV  E+ + +ARELDL S++ +     K       
Sbjct: 58  LVIANQLYTMHSKATEGELSRWRASLVREESLAVIARELDLGSYLVLGPGELKSGGFRRD 117

Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFG 170
           SI AD +E+ I A+YLD G +VA + + + +++  + L      +D KT LQEW      
Sbjct: 118 SILADALEATIGAVYLDQGFDVAQSLLVRLFERMLQDLPDAASLKDPKTRLQEWLQGSKR 177

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
             P Y+VT   G  H   F V   +S     A G   S+R AEQ AA  + +  
Sbjct: 178 ELPSYEVTTIRGQAHKQVFEVTCTLSDTQQTAVGRGSSRRKAEQAAAESMFEAL 231


>gi|317012480|gb|ADU83088.1| ribonuclease III [Helicobacter pylori Lithuania75]
          Length = 239

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 78/220 (35%), Positives = 115/220 (52%), Gaps = 4/220 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++ F  
Sbjct: 18  YLTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 75

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA   +++A+ + L  ++R+SS           SI +   E+L+A 
Sbjct: 76  YDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRISSSEEISNGREKPSILSSAFEALMAG 135

Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YL+ G+      +     +    L       D KT LQE   A+F V P Y++    GP
Sbjct: 136 VYLEAGLAKVRKIMQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLQEKGP 195

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           DH   F + + I     A     SK+ AEQ  A + L++ 
Sbjct: 196 DHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQALQKL 235


>gi|217032489|ref|ZP_03437981.1| hypothetical protein HPB128_156g19 [Helicobacter pylori B128]
 gi|298736360|ref|YP_003728886.1| ribonuclease 3 [Helicobacter pylori B8]
 gi|216945835|gb|EEC24456.1| hypothetical protein HPB128_156g19 [Helicobacter pylori B128]
 gi|298355550|emb|CBI66422.1| ribonuclease 3 [Helicobacter pylori B8]
          Length = 239

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 79/220 (35%), Positives = 114/220 (51%), Gaps = 4/220 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++ F  
Sbjct: 18  YLTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 75

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA   +++A+ + L  ++RVSS           SI +   E+L+A 
Sbjct: 76  YDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRVSSSEEISNGREKPSILSSAFEALMAG 135

Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YL+ G+      +     +    L       D KT LQE   A+F V P Y++    GP
Sbjct: 136 VYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLQEKGP 195

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           DH   F + + I     A     SK+ AEQ  A   L++ 
Sbjct: 196 DHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYYALQKL 235


>gi|29654794|ref|NP_820486.1| ribonuclease III [Coxiella burnetii RSA 493]
 gi|161830652|ref|YP_001597345.1| ribonuclease III [Coxiella burnetii RSA 331]
 gi|30581027|sp|P51837|RNC_COXBU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043306|sp|A9N942|RNC_COXBR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|29542062|gb|AAO91000.1| ribonuclease III [Coxiella burnetii RSA 493]
 gi|161762519|gb|ABX78161.1| ribonuclease III [Coxiella burnetii RSA 331]
          Length = 233

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 74/219 (33%), Positives = 125/219 (57%), Gaps = 7/219 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            + L +R+G+ F N  LL+ ALTH S   S  ++ ERLEFLGD +LG +I++ L+     
Sbjct: 4   LNKLMERLGHQFNNLELLKIALTHCS---SGADNNERLEFLGDSVLGFIIASELYQRRPQ 60

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A+EG+LS    S+V+ +  +Q++ +L +  ++++    +K       SI AD +E+++ A
Sbjct: 61  AREGDLSRMRASMVNGDELAQMSTKLGINEYLQLGVGEQKSGGKRRRSILADALEAIVGA 120

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +Y+D G+E     V  ++ +R     K   ++DAK+ LQEW  A+    P Y+V   +G 
Sbjct: 121 IYIDAGLETCRRCVLNWYGERVDDLSKLSPKKDAKSLLQEWLQARRLPLPTYEV-KITGE 179

Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221
            H   FTV   + GL    +G++ ++R AEQ+AA   L+
Sbjct: 180 AHAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAKRFLE 218


>gi|302335832|ref|YP_003801039.1| RNAse III [Olsenella uli DSM 7084]
 gi|301319672|gb|ADK68159.1| RNAse III [Olsenella uli DSM 7084]
          Length = 242

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 79/224 (35%), Positives = 113/224 (50%), Gaps = 3/224 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
           R   +E+ +G+ F+++ L+  A+TH S         SYERLEFLGD ILG +++T +F  
Sbjct: 6   RVVAVEQIVGHHFSDQRLITSAITHPSAVEGKPVSASYERLEFLGDSILGAMVATDMFER 65

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EGEL+    SLVS +T S+VA  L +   I      R      M S   +V E++
Sbjct: 66  FPGMDEGELTRLKISLVSGKTLSEVAGSLGIGELIVFGESERGTGARGMHSALENVYEAI 125

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + ALYLD G E    FV +      + +        K+ LQE    +F   PEY++    
Sbjct: 126 VGALYLDAGFEATHDFVRRTLSPHMVPELAARPLSPKSRLQEVTQREFRCAPEYRLEGEE 185

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           GP H P FT VV + G    +G   SK+ +E  AA + L R G+
Sbjct: 186 GPAHSPTFTTVVLVDGRRVGRGSGPSKKESESQAALDALDRLGL 229


>gi|297588527|ref|ZP_06947170.1| ribonuclease III [Finegoldia magna ATCC 53516]
 gi|297573900|gb|EFH92621.1| ribonuclease III [Finegoldia magna ATCC 53516]
          Length = 238

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 111/227 (48%), Gaps = 7/227 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59
            +   LE+++ Y F + +LL  A  HSS  +  +     S ERLEFLGD +L L++S  L
Sbjct: 7   EKLHELEEKLDYRFTDINLLNLAFFHSSYGNENKSYKDISNERLEFLGDSVLDLIVSDFL 66

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +N   S KEG ++   + +V  ++ S +A+ L+L  ++ +         S   S+ AD  
Sbjct: 67  YNSKSSLKEGAMTKIRSQMVCEKSFSNMAKYLELGKYLMMGHGEFISGGSEKPSVLADTF 126

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           E++  A+YLD G E A   V+  +K      +++     D KT LQE          +YK
Sbjct: 127 EAVFGAIYLDSGYESAFKIVENKFKSLFIAEIETKSSFIDYKTMLQENNQKNSRDKLKYK 186

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +    GPDHD +F V V    L    G   SK+ AEQ AA   L + 
Sbjct: 187 IVKEEGPDHDKKFYVDVYEGNLVIGSGFGSSKKHAEQDAARNALIKL 233


>gi|119383173|ref|YP_914229.1| ribonuclease III [Paracoccus denitrificans PD1222]
 gi|119372940|gb|ABL68533.1| RNAse III [Paracoccus denitrificans PD1222]
          Length = 241

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 84/221 (38%), Positives = 123/221 (55%), Gaps = 1/221 (0%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           +       +R+G+ F+   LL +ALTH SI+ + +   +RLEFLGDR+LGL I+  LF+ 
Sbjct: 16  SADLRAFSERLGHEFSRPELLRRALTHGSIASTTRPDNQRLEFLGDRVLGLTIAEALFSA 75

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
             +A EG+L+ R+N+LV  ETC+ +ARE+ L   +++             ++ AD +E++
Sbjct: 76  DRAATEGQLAPRYNALVKGETCAAIAREIGLGEVLKLGRSEMMSGGRRKEALLADAMEAV 135

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           IAA+YLD G E A   V   W  R        RDAKT LQEWA A+    P Y    R+G
Sbjct: 136 IAAVYLDAGFETARGVVLGLWSDRLANVETDARDAKTALQEWAQAQGMSPPRYVQIARTG 195

Query: 183 PDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLKR 222
           PDH P F + V +     A      +KR+ EQ AA  +L++
Sbjct: 196 PDHAPEFQITVRLDDGREASASGKGTKRSIEQAAATAMLEQ 236


>gi|298291621|ref|YP_003693560.1| ribonuclease III [Starkeya novella DSM 506]
 gi|296928132|gb|ADH88941.1| ribonuclease III [Starkeya novella DSM 506]
          Length = 243

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 86/208 (41%), Positives = 121/208 (58%), Gaps = 6/208 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI------SHSYQESYERLEFLGDRILGLLISTLL 59
              LE  +G+ FA+R+ L  ALTH S       S +   SY+RLEFLGD +LGL++S +L
Sbjct: 18  LDALEAALGHRFASRAHLRLALTHISSVTGAQGSQARVRSYQRLEFLGDHVLGLVVSDML 77

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  + +A+EGELS R   LV  E C++VAR +DL  +IR+     +       +I ADV 
Sbjct: 78  YRAYPNAEEGELSRRLADLVCEEACAEVARAMDLGPYIRLGPGEDRTGGRERPAILADVA 137

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E+++AA+YLD G E A   V+K+W+ R    G   RD KT LQEWA  +    P Y++  
Sbjct: 138 EAVLAAVYLDAGFEAAEAMVEKFWRPRLSTPGSSARDPKTALQEWAQGRGLPPPHYRLVE 197

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           RSGPDH+P F + VE+ G    +    S
Sbjct: 198 RSGPDHNPEFRIAVELPGYTAIEATGPS 225


>gi|297202624|ref|ZP_06920021.1| ribonuclease III [Streptomyces sviceus ATCC 29083]
 gi|197713199|gb|EDY57233.1| ribonuclease III [Streptomyces sviceus ATCC 29083]
          Length = 272

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 80/223 (35%), Positives = 119/223 (53%), Gaps = 6/223 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLF 60
           A  ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L+
Sbjct: 13  ASSHTLLEGRLGYKLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLY 71

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N      EG+L+    ++V++   ++V R LDL SFIR+             SI AD +E
Sbjct: 72  NTHPDLPEGQLAKLRAAVVNSRALAEVGRGLDLGSFIRLGRGEEGTGGRDKASILADTLE 131

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD G++ A   V + +     KS       D KT LQE    +    PEY VT
Sbjct: 132 AVIGAVYLDQGLKAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLVT 191

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             +GPDH+  FT    + G++   G   SK+ AEQ AA    +
Sbjct: 192 -ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWR 233


>gi|325915827|ref|ZP_08178126.1| RNAse III [Xanthomonas vesicatoria ATCC 35937]
 gi|325537948|gb|EGD09645.1| RNAse III [Xanthomonas vesicatoria ATCC 35937]
          Length = 226

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 80/218 (36%), Positives = 113/218 (51%), Gaps = 6/218 (2%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           IG+AFA+  LL +AL H S    +    ERLEFLGD I+ LLI+  L+  +  A EG L+
Sbjct: 12  IGHAFADPGLLARALRHRSAGTPH---NERLEFLGDGIVNLLIAEALYQRWPKADEGALT 68

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                LV     + + R L+L   + +     K       SI AD VE+++AA+YLD G 
Sbjct: 69  RARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDCGF 128

Query: 133 EVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           E     V  +++    AL  GK  +D KT LQEW  A+    P Y +   SG +H  +F 
Sbjct: 129 ERCRAVVLPWFEPSLAALPVGKAEKDPKTRLQEWLQARQLPLPNYALISESGDEHAKQFH 188

Query: 191 VVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           V   +   +A A+G   S+R AEQ AAA V+ +  + T
Sbjct: 189 VACILEQPIARAEGQGTSRRLAEQQAAATVIAQLDVNT 226


>gi|66047178|ref|YP_237019.1| ribonuclease III [Pseudomonas syringae pv. syringae B728a]
 gi|257486563|ref|ZP_05640604.1| ribonuclease III [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289628144|ref|ZP_06461098.1| ribonuclease III [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289649890|ref|ZP_06481233.1| ribonuclease III [Pseudomonas syringae pv. aesculi str. 2250]
 gi|289676656|ref|ZP_06497546.1| ribonuclease III [Pseudomonas syringae pv. syringae FF5]
 gi|298488677|ref|ZP_07006706.1| Ribonuclease III [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|302186917|ref|ZP_07263590.1| ribonuclease III [Pseudomonas syringae pv. syringae 642]
 gi|75500898|sp|Q4ZPE1|RNC_PSEU2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|63257885|gb|AAY38981.1| Ribonuclease III [Pseudomonas syringae pv. syringae B728a]
 gi|298156750|gb|EFH97841.1| Ribonuclease III [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|330871241|gb|EGH05950.1| ribonuclease III [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330898515|gb|EGH29934.1| ribonuclease III [Pseudomonas syringae pv. japonica str. M301072PT]
 gi|330950056|gb|EGH50316.1| ribonuclease III [Pseudomonas syringae Cit 7]
 gi|330973032|gb|EGH73098.1| ribonuclease III [Pseudomonas syringae pv. aceris str. M302273PT]
 gi|330989032|gb|EGH87135.1| ribonuclease III [Pseudomonas syringae pv. lachrymans str. M301315]
 gi|331010046|gb|EGH90102.1| ribonuclease III [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 229

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 79/214 (36%), Positives = 112/214 (52%), Gaps = 6/214 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           ++  S LE+++GY F ++ L+  ALTH S +     + ERLEFLGD IL  +    LF  
Sbjct: 2   SVSLSRLERQLGYTFKDQELMVLALTHRSFA---GRNNERLEFLGDAILNFVAGEALFER 58

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F  A+EG+LS     LV  ET + +AR  DL  ++R+ S   K       SI AD +E+L
Sbjct: 59  FPQAREGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADALEAL 118

Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           I A+YLD G+E A   V  +      +L      +D KT LQE+  ++    P Y+V   
Sbjct: 119 IGAIYLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACELPRYEVVDI 178

Query: 181 SGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213
            G  H   F V  EI+ L   ++G   S+R AEQ
Sbjct: 179 QGEPHCRTFFVECEINLLNEKSRGQGVSRRIAEQ 212


>gi|229825033|ref|ZP_04451102.1| hypothetical protein GCWU000182_00383 [Abiotrophia defectiva ATCC
           49176]
 gi|229790780|gb|EEP26894.1| hypothetical protein GCWU000182_00383 [Abiotrophia defectiva ATCC
           49176]
          Length = 247

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 112/226 (49%), Gaps = 5/226 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIST 57
              +   +E+ IGYAF NR  L  A +HSS  +       +  ER+EFLGD +L L+ S 
Sbjct: 12  KPEKAEKIEQTIGYAFKNRKFLTNAFSHSSFVNEKHLSKSDCNERMEFLGDAVLELVTSE 71

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LFN     +EGEL+     LV     +  ARE+ L+ ++ +             SI +D
Sbjct: 72  FLFNGHKDMQEGELTKLRARLVCEPALAYSAREIGLSDYLLLGHGEAITGGRNRDSILSD 131

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
            +E+LI A+YLDGG+  A  F++K+     ++  K   D+KT  QE   +    T  YK+
Sbjct: 132 AMEALIGAIYLDGGLTNAKEFIEKHVL-NDIEHKKLFFDSKTIFQEMVQSDNMGTISYKL 190

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               GPDHD +F   V I       G   +K+AAEQVAA   + + 
Sbjct: 191 LAEYGPDHDKKFKEAVYIGEKEYGVGEGHTKKAAEQVAAYNGILKL 236


>gi|329121261|ref|ZP_08249888.1| ribonuclease III [Dialister micraerophilus DSM 19965]
 gi|327470195|gb|EGF15658.1| ribonuclease III [Dialister micraerophilus DSM 19965]
          Length = 239

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 77/231 (33%), Positives = 112/231 (48%), Gaps = 9/231 (3%)

Query: 1   MSALRYSTLEKRIG---YAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGL 53
           M   R   LE+ I        N  LL  ALTH+S ++ ++++     ERLEFLGD +L L
Sbjct: 1   MHKNRIKELEEFIKENEIPIENHELLNIALTHTSYANEHKKNKEHDNERLEFLGDAVLDL 60

Query: 54  LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
           ++   LF  +    EGEL+    S V    C++++  L++  ++ +     K       S
Sbjct: 61  IVGEYLFRKYPLWSEGELTKAKASAVCKPACAEISTRLNVGKYLLLGKGEEKSGGRTRVS 120

Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGV 171
           I  D  ESLI A+YLD G EV   FV K+ ++    +  G + +D KT+LQE       V
Sbjct: 121 ILGDAFESLIGAIYLDIGYEVTFDFVIKHLEKFLDLIMQGDYDKDYKTDLQEILQQNGDV 180

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              Y V    GPDHD    + V   G     G+  SK+ A Q AA E ++R
Sbjct: 181 EICYNVIHDEGPDHDKTIWMSVTADGKYLGSGIGKSKKQAAQRAAKEAIER 231


>gi|330466266|ref|YP_004404009.1| ribonuclease iii [Verrucosispora maris AB-18-032]
 gi|328809237|gb|AEB43409.1| ribonuclease iii [Verrucosispora maris AB-18-032]
          Length = 287

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 109/227 (48%), Gaps = 9/227 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH 62
               LE   G +  +  LLE+ALTH S ++      + ERLEFLGD +LG++I+T LF++
Sbjct: 10  SIGHLEAAFGVS-MDPELLERALTHRSYAYENGGLPTNERLEFLGDSVLGVVITTALFHN 68

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVV 119
                EG+L+    S+V+    + VAR L    L  ++ +             SI AD +
Sbjct: 69  HPDLPEGQLAKLRASVVNMRALADVARGLGPDGLGPYLLLGKGEETTGGRDKASILADTL 128

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKV 177
           E+L+ A+YL  G++ A   + + +     +S       D KT LQE   A     PEY++
Sbjct: 129 EALLGAIYLQYGLDTAAEVIHRLFDPLMAESAGRGAALDWKTSLQELTAALGLGVPEYRI 188

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              +GPDH   FT  V ++G         SK+ AEQ AA    +   
Sbjct: 189 EG-AGPDHLKTFTAWVVVAGNRYGGADGRSKKEAEQRAAESAWRTLN 234


>gi|262375526|ref|ZP_06068759.1| ribonuclease III [Acinetobacter lwoffii SH145]
 gi|262309780|gb|EEY90910.1| ribonuclease III [Acinetobacter lwoffii SH145]
          Length = 232

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 85/223 (38%), Positives = 124/223 (55%), Gaps = 5/223 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           S L    L KRIGY F    LL+ ALTH S+SH +  +YERLEFLGD +LG++I+  LFN
Sbjct: 6   SKLNDERLAKRIGYQFKQADLLKLALTHRSVSHKH--NYERLEFLGDSLLGMIIANYLFN 63

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + S  EG L+    +LV  E   ++A +L L+  + +S+   K       SI AD VE+
Sbjct: 64  AYPSENEGRLTRMRATLVRQEALGKIANDLKLSQNLILSTGELKSGGHHRESILADTVEA 123

Query: 122 LIAALYLDGG-IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +I A+Y+D G + V    V K+++     ++     +D K+ LQE+  A+    P Y+V 
Sbjct: 124 IIGAIYVDCGDLTVLEPIVLKWYEPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVV 183

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              G   +  F V  +I+GL   QG   S+R AEQ  AA++LK
Sbjct: 184 DIQGDAPNQHFKVECQIAGLPTMQGEGASRRFAEQAVAADILK 226


>gi|317181975|dbj|BAJ59759.1| ribonuclease III [Helicobacter pylori F57]
          Length = 238

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 79/224 (35%), Positives = 116/224 (51%), Gaps = 4/224 (1%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +   Y+TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++
Sbjct: 13  TNSSYATLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYH 70

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F    EG+LS    S+VSA   +++A+ + L  ++RVSS           SI +   E+
Sbjct: 71  KFYQYDEGKLSKLRASIVSAHGFTKLAKVIALQDYLRVSSSEEISNGREKPSILSSAFEA 130

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           L+A +YL+ G+            +    L       D KT LQE   A+F V P Y++  
Sbjct: 131 LMAGVYLEAGLAKVRKITQNLLNRTYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLK 190

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             GPDH   F + + I     A     SK+ AEQ  A + L++ 
Sbjct: 191 EKGPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKL 234


>gi|308182848|ref|YP_003926975.1| ribonuclease III [Helicobacter pylori PeCan4]
 gi|308065033|gb|ADO06925.1| ribonuclease III [Helicobacter pylori PeCan4]
          Length = 239

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 79/220 (35%), Positives = 116/220 (52%), Gaps = 4/220 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++ F  
Sbjct: 18  YLTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 75

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA+  +++A+ + L  ++RVSS           SI +   E+L+A 
Sbjct: 76  YDEGKLSKLRASIVSAQGFTKLAKAIALQDYLRVSSSEEISNGREKPSILSSAFEALMAG 135

Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YL+ G+      +     +    L       D KT LQE   A+F V P Y++    GP
Sbjct: 136 VYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPIYQLLKEKGP 195

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           DH   F + + I     A     SK+ AEQ  A + L++ 
Sbjct: 196 DHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQALQKL 235


>gi|169824545|ref|YP_001692156.1| ribonuclease III [Finegoldia magna ATCC 29328]
 gi|302380368|ref|ZP_07268838.1| ribonuclease III [Finegoldia magna ACS-171-V-Col3]
 gi|303233642|ref|ZP_07320296.1| ribonuclease III [Finegoldia magna BVS033A4]
 gi|167831350|dbj|BAG08266.1| ribonuclease III [Finegoldia magna ATCC 29328]
 gi|302311858|gb|EFK93869.1| ribonuclease III [Finegoldia magna ACS-171-V-Col3]
 gi|302495076|gb|EFL54828.1| ribonuclease III [Finegoldia magna BVS033A4]
          Length = 238

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 74/227 (32%), Positives = 112/227 (49%), Gaps = 7/227 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59
            +   LE+++ Y F + +LL  A  HSS  +  +     S ERLEFLGD +L L++S  L
Sbjct: 7   EKLHELEEKLDYRFTDINLLNLAFFHSSYGNENKAYKNISNERLEFLGDSVLDLVVSDFL 66

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +N   S KEG ++   + +V  ++ S +A+ L+L  ++ +         S   S+ AD  
Sbjct: 67  YNSKSSLKEGAMTKIRSQMVCEKSFSNMAKYLELGKYLMMGHGEFISGGSEKPSVLADTF 126

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           E++  A+YLD G E A   V+  +K      +++     D KT LQE    K     +YK
Sbjct: 127 EAVFGAIYLDSGYESAFKIVENKFKSLFIAEIETKSSFIDYKTMLQENNQKKSRDKLKYK 186

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +    GPDHD +F V V    L    G   SK+ AEQ AA   L + 
Sbjct: 187 IVKEEGPDHDKKFYVDVYEGNLVIGSGFGSSKKHAEQDAARNALIKL 233


>gi|229588601|ref|YP_002870720.1| ribonuclease III [Pseudomonas fluorescens SBW25]
 gi|259491960|sp|C3K6Y7|RNC_PSEFS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|229360467|emb|CAY47324.1| ribonuclease III [Pseudomonas fluorescens SBW25]
          Length = 229

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 77/214 (35%), Positives = 109/214 (50%), Gaps = 6/214 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            +  + LE+++GY F ++ L+  ALTH S +     + ERLEFLGD IL  +    LF  
Sbjct: 2   TVSLARLERQLGYTFKDQELMVLALTHRSFA---GRNNERLEFLGDAILNFVAGEALFER 58

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F  A+EG+LS     LV  ET + +AR   L  ++R+ S   K       SI AD +E+L
Sbjct: 59  FPQAREGQLSRLRARLVKGETLAVLARGFGLGEYLRLGSGELKSGGFRRESILADALEAL 118

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           I A+YLD G+E A   V  +       L      +D KT LQE+  ++    P Y+V   
Sbjct: 119 IGAIYLDAGMEAAKERVTAWLTSEIESLTLVDTNKDPKTRLQEFLQSRGCELPRYEVVDI 178

Query: 181 SGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213
            G  H   F V  EI+ L   ++G   S+R AEQ
Sbjct: 179 QGEPHCRVFFVECEITLLNEKSRGQGVSRRIAEQ 212


>gi|319943505|ref|ZP_08017787.1| ribonuclease III [Lautropia mirabilis ATCC 51599]
 gi|319743320|gb|EFV95725.1| ribonuclease III [Lautropia mirabilis ATCC 51599]
          Length = 247

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 76/225 (33%), Positives = 116/225 (51%), Gaps = 7/225 (3%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
            ++R++ LE R+GY F + +LL +ALTH S     ++  ERLEFLGD +L   +++LL+ 
Sbjct: 21  DSIRHT-LEGRLGYRFQSEALLVQALTHRS---HGRQHNERLEFLGDSVLNCAVASLLYA 76

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F  + EG LS    +LV  +    +A  L L   + +    RK       SI AD VE+
Sbjct: 77  RFADSPEGALSRLRANLVKQDPLHDIACGLSLPDALILGEGERKSGGHRRPSILADAVEA 136

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           L+ A++L+ G   A   V++ ++    A+   +  +DAKT LQE+        P Y+V  
Sbjct: 137 LLGAIFLESGFAAAAGVVERLYQPLLDAIDPHELGKDAKTRLQEYLQGHRLPLPRYQVVA 196

Query: 180 RSGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
             G  HD RF V  ++       +G   S+R AEQVAA   L+  
Sbjct: 197 THGQAHDQRFDVECQLDKPKLSFEGSGESRRKAEQVAARAALEHL 241


>gi|320325568|gb|EFW81630.1| ribonuclease III [Pseudomonas syringae pv. glycinea str. B076]
 gi|320327146|gb|EFW83160.1| ribonuclease III [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330879244|gb|EGH13393.1| ribonuclease III [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 229

 Score =  245 bits (626), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 78/214 (36%), Positives = 112/214 (52%), Gaps = 6/214 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           ++  S LE+++GY F ++ L+  ALTH S +     + ERLEFLGD IL  +    LF  
Sbjct: 2   SVSLSRLERQLGYTFKDQELMVLALTHRSFA---GRNNERLEFLGDAILNFVAGEALFER 58

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F  A+EG+LS     LV  ET + +AR  +L  ++R+ S   K       SI AD +E+L
Sbjct: 59  FPQAREGQLSRLRARLVKGETLALLARGFNLGEYLRLGSGELKSGGFRRESILADALEAL 118

Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           I A+YLD G+E A   V  +      +L      +D KT LQE+  ++    P Y+V   
Sbjct: 119 IGAIYLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACELPRYEVVDI 178

Query: 181 SGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213
            G  H   F V  EI+ L   ++G   S+R AEQ
Sbjct: 179 QGEPHCRTFFVECEINLLNEKSRGQGVSRRIAEQ 212


>gi|239944597|ref|ZP_04696534.1| ribonuclease III [Streptomyces roseosporus NRRL 15998]
          Length = 271

 Score =  245 bits (626), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 77/224 (34%), Positives = 119/224 (53%), Gaps = 6/224 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           +A  ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L
Sbjct: 13  TASSHTLLEGRLGYHLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 71

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +       EG+L+    ++V++   ++V R L+L SFIR+             SI AD +
Sbjct: 72  YRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTL 131

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD G+  A   V + +     +S       D KT LQE   ++    PEY V
Sbjct: 132 EAVIGAVYLDQGLSAASELVHRLFDPLIDRSSNLGAGLDWKTSLQELTASESLGVPEYLV 191

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           T  +GPDH+  FT    + G++   G   SK+ AEQ AA    +
Sbjct: 192 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWR 234


>gi|17545782|ref|NP_519184.1| ribonuclease III [Ralstonia solanacearum GMI1000]
 gi|22654059|sp|Q8Y0I1|RNC_RALSO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|17428076|emb|CAD14765.1| probable ribonuclease III (rnase III) protein [Ralstonia
           solanacearum GMI1000]
          Length = 256

 Score =  245 bits (626), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 74/221 (33%), Positives = 109/221 (49%), Gaps = 6/221 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +    L++R+GY F+   LL++ALTH S         ERLEFLGD IL   ++ +L+  F
Sbjct: 1   MSLEALQQRLGYRFSKPELLQQALTHRS---HNAMHNERLEFLGDSILNCAVADMLYGMF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  +   ++A+ L L   +R+     K       SI AD +E++ 
Sbjct: 58  GKLDEGDLSRVRANLVKQQALYEIAQMLLLPDELRLGEGELKSGGFRRPSILADALEAIF 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG + A T + K +      +      +DAKT LQE+        P+Y V    
Sbjct: 118 GAVFLDGGFDAARTLIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYAVVATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221
           G  H+ +F V   I  L     G   S+RAAEQ AA   L+
Sbjct: 178 GAAHNQQFEVECTIPKLEIRVSGSGASRRAAEQSAAKLALE 218


>gi|330811510|ref|YP_004355972.1| ribonuclease III [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327379618|gb|AEA70968.1| Ribonuclease III [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 229

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 78/214 (36%), Positives = 111/214 (51%), Gaps = 6/214 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           ++  S LE+++GY F ++ L+  ALTH S +     + ERLEFLGD IL  +    LF  
Sbjct: 2   SVSLSRLERQLGYTFKDQDLMLLALTHRSFA---GRNNERLEFLGDAILNFVAGEALFER 58

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F  A+EG+LS     LV  ET + +AR  DL  ++R+ S   K       SI AD +E+L
Sbjct: 59  FPLAREGQLSRLRARLVKGETLAVLARGFDLGDYLRLGSGELKSGGFRRESILADALEAL 118

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           I A+YLD G+E+A   V  +       L      +D KT LQE+  ++    P Y+V   
Sbjct: 119 IGAIYLDAGMEMARERVLAWLTSEIDSLTLVDTNKDPKTRLQEFLQSRSCELPRYEVVDI 178

Query: 181 SGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213
            G  H   F V  E+  L   ++G   S+R AEQ
Sbjct: 179 QGEPHCRTFFVECEVVLLNEKSRGQGVSRRIAEQ 212


>gi|307637352|gb|ADN79802.1| Ribonuclease III [Helicobacter pylori 908]
 gi|325995944|gb|ADZ51349.1| Ribonuclease III [Helicobacter pylori 2018]
 gi|325997538|gb|ADZ49746.1| Ribonuclease III [Helicobacter pylori 2017]
          Length = 239

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 79/220 (35%), Positives = 115/220 (52%), Gaps = 4/220 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++ F  
Sbjct: 18  YLTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 75

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA   +++A+ + L  ++ VSS           SI +   E+L+A 
Sbjct: 76  YDEGKLSKLRASIVSAHGFTKLAKAIALQDYLHVSSSEEISKGREKPSILSSAFEALMAG 135

Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YL+ G+      + K   +    L       D KT LQE   A+F V P Y++    GP
Sbjct: 136 VYLEAGLAKVRKIIQKLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLQEKGP 195

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           DH   F + + I     A     SK+ AEQ  A + L++ 
Sbjct: 196 DHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQALQKL 235


>gi|86152331|ref|ZP_01070542.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 260.94]
 gi|315125039|ref|YP_004067043.1| ribonuclease III [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
 gi|85840820|gb|EAQ58071.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 260.94]
 gi|315018761|gb|ADT66854.1| ribonuclease III [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
          Length = 224

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 124/222 (55%), Gaps = 4/222 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               LE+ + Y F +++LL  ALTH S   SY  + ERLEFLGD +L L++   LF+ F 
Sbjct: 3   NIEKLERSLTYEFKDKNLLIHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLFHKFA 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+LS    +LV+ ++ +++A  L+L  FI +S   + +      SI +D +E++I 
Sbjct: 61  KDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEKNNGGKEKPSILSDALEAIIG 120

Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A++L+ G E A T   +  ++    + +    +D KT+LQE    K G TP+Y+     G
Sbjct: 121 AIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFG 180

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           PDH  +F + + + G   A+ +  SK+ A+Q+AA   L++ G
Sbjct: 181 PDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 222


>gi|134095253|ref|YP_001100328.1| RNase III, ds RNA (partial match) [Herminiimonas arsenicoxydans]
 gi|133739156|emb|CAL62205.1| Ribonuclease III [Herminiimonas arsenicoxydans]
          Length = 328

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 71/221 (32%), Positives = 114/221 (51%), Gaps = 6/221 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  + L+ R+G+ F +  L+++ALTH S S  +    ERLEFLGD IL  ++++LLF+ +
Sbjct: 1   MDVTLLQNRLGHTFKDAVLMQQALTHRSHSSVH---NERLEFLGDSILNCVVASLLFDRY 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+L+ F+R+     K       SI AD +E+L 
Sbjct: 58  SKIDEGDLSRLRANLVKQQSLYEIAQRLELSQFLRLGEGELKSGGFRRPSILADTLEALF 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LD G   A   +   +     ++      +DAKT LQE+   K    P+Y V    
Sbjct: 118 GAIFLDAGFNAARDVIRALYIPILDSVDPKTLGKDAKTLLQEYLQGKKIALPQYNVVATH 177

Query: 182 GPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLK 221
           G  H+  F +   +  L     G   S+RA EQ AA   L+
Sbjct: 178 GAAHNQEFEIECLVPKLDIQVFGTGGSRRAGEQAAAKLALE 218


>gi|317178975|dbj|BAJ56763.1| ribonuclease III [Helicobacter pylori F30]
          Length = 232

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 78/220 (35%), Positives = 114/220 (51%), Gaps = 4/220 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++ F  
Sbjct: 11  YITLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 68

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VS    +++A+ + L  ++RVSS           SI +   E+L+A 
Sbjct: 69  YDEGKLSKLRASIVSTHGFTKLAKVIALQDYLRVSSSEEISKGREKPSILSSAFEALMAG 128

Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YL+ G+      +     +    L       D KT LQE   A+F V P Y++    GP
Sbjct: 129 VYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKEKGP 188

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           DH   F + + I     A     SK+ AEQ  A + L++ 
Sbjct: 189 DHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKL 228


>gi|291277478|ref|YP_003517250.1| ribonuclease III [Helicobacter mustelae 12198]
 gi|290964672|emb|CBG40527.1| ribonuclease III [Helicobacter mustelae 12198]
          Length = 223

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 75/216 (34%), Positives = 113/216 (52%), Gaps = 4/216 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LEK I Y F N+ LL  ALTH S  +  +++ ERLE+LGD +L LLI   L+  F   KE
Sbjct: 4   LEKAINYHFKNQDLLLTALTHKSCKN--KKNNERLEYLGDAVLDLLIGEFLYQEFPEHKE 61

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    +LV+ ++  + A+ + L  FI +SS+   +      SI +   E+LI A+YL
Sbjct: 62  GDLSKMRAALVNEQSFMRFAKAIHLQDFILISSNEETNQGREKPSILSSAFEALIGAVYL 121

Query: 129 DGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           + G+E A         +    + +     D KT LQE   A F   P+Y++    GPDH 
Sbjct: 122 EAGLERAKDITYHLLHKLYPKIDTQSLFTDYKTALQELTQAHFHEIPKYELLEEIGPDHC 181

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            +F V V I     A+ +  SK++A+Q  A    ++
Sbjct: 182 KKFKVSVYIQNQEYAKAIGTSKKSAQQNCAKIAYQK 217


>gi|331002416|ref|ZP_08325934.1| ribonuclease III [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330410232|gb|EGG89666.1| ribonuclease III [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 232

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 68/213 (31%), Positives = 105/213 (49%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M+      L++ +GY + N+ LL++ALTHSS ++ +Q     S ERLEFLGD +L L+ S
Sbjct: 1   MNN-NLKELQELLGYEYKNKELLKQALTHSSYANEHQLGKNGSNERLEFLGDAVLELVSS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
              +  +    EGEL+    S V        A+ + L+ F+++             SI +
Sbjct: 60  EFFYGVYPEKPEGELTKIRASFVCEPALVDCAKNIKLSEFLKLGKGEEHTGGRMRPSIIS 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D  E++I ++YLDGG   A   + K+      ++  F  D+KT LQE   ++     EY 
Sbjct: 120 DTFEAIIGSIYLDGGFASAKEVILKFILNEY-ENKVFFYDSKTILQEVIQSQDSKPVEYT 178

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           +    GPDH  +F V V I G     G   SK+
Sbjct: 179 LLSEEGPDHLKKFVVAVNIDGKRAGVGEGVSKK 211


>gi|121533802|ref|ZP_01665629.1| Ribonuclease III [Thermosinus carboxydivorans Nor1]
 gi|121307793|gb|EAX48708.1| Ribonuclease III [Thermosinus carboxydivorans Nor1]
          Length = 243

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 107/224 (47%), Gaps = 6/224 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNH 62
              L   +G +F +  LL +AL H+S ++  +   E  ERLEFLGD +L L+IS  L+ +
Sbjct: 13  LRDLAASLGISFNDLGLLHQALVHTSYANEVKGGVEHNERLEFLGDAVLELIISEYLYRN 72

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EGEL+     LV   + +Q A  L L  ++ +            TSI AD  E++
Sbjct: 73  FPELPEGELTKARARLVCEPSLAQCASRLGLGKYLLLGKGEAVSGGRERTSILADAFEAV 132

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRAL---KSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           I A+YLDGG+  A  FV  +  +      +      D KT LQE           Y+V  
Sbjct: 133 IGAIYLDGGVSAATNFVLNHLHEDLALIWRGDYVFYDYKTVLQEVVQQAGECKISYEVVA 192

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             GPDH+  F V V ++      G   +K+ AEQ AA E L++ 
Sbjct: 193 EYGPDHNKTFEVSVLVNHQHLGAGSGKNKKEAEQNAAKEALQKL 236


>gi|207092393|ref|ZP_03240180.1| ribonuclease III [Helicobacter pylori HPKX_438_AG0C1]
          Length = 239

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 79/220 (35%), Positives = 116/220 (52%), Gaps = 4/220 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y+TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++ F  
Sbjct: 18  YTTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 75

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA+  +++A+ + L  ++RVSS           SI +   E+L+A 
Sbjct: 76  YDEGKLSKLRASIVSAQGFTKLAKVISLQDYLRVSSSEEISKGREKPSILSSAFEALMAG 135

Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YL+ G+      +     +    L       D KT LQE   A+F V P Y++    GP
Sbjct: 136 VYLEAGLAKVRKIMQNLLNRAYKRLDLEHLSVDYKTALQELTQAQFCVIPTYQLLKEKGP 195

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           DH   F + + I     A     SK+ AEQ  A   L++ 
Sbjct: 196 DHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYYALQKL 235


>gi|77457221|ref|YP_346726.1| ribonuclease III [Pseudomonas fluorescens Pf0-1]
 gi|90101638|sp|Q3KHL9|RNC_PSEPF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|77381224|gb|ABA72737.1| ribonuclease III [Pseudomonas fluorescens Pf0-1]
          Length = 229

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 79/214 (36%), Positives = 112/214 (52%), Gaps = 6/214 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           ++  S LE+++GY F ++ L+  ALTH S +     + ERLEFLGD IL  +    LF+ 
Sbjct: 2   SVSLSRLERQLGYTFKDQELMVLALTHRSFA---GRNNERLEFLGDAILNFVAGEALFDR 58

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F  A+EG+LS     LV  ET + +AR  DL  ++R+ S   K       SI AD +E+L
Sbjct: 59  FPLAREGQLSRLRARLVKGETLAVLARGFDLGDYLRLGSGELKSGGFRRESILADALEAL 118

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           I A+YLD G+EVA   V  +       L      +D KT LQE+  ++    P Y+V   
Sbjct: 119 IGAIYLDAGMEVARERVLAWLAGEFEGLTLVDTNKDPKTRLQEFLQSRGCELPRYEVVDI 178

Query: 181 SGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213
            G  H   F V  E+  L   ++G   S+R AEQ
Sbjct: 179 QGEPHCRTFFVECEVVLLNEKSRGQGVSRRIAEQ 212


>gi|317180453|dbj|BAJ58239.1| ribonuclease III [Helicobacter pylori F32]
          Length = 238

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 79/224 (35%), Positives = 116/224 (51%), Gaps = 4/224 (1%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +   Y+TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++
Sbjct: 13  TNSSYATLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYH 70

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F    EG+LS    S+VSA   +++A+ + L  ++RVSS           SI +   E+
Sbjct: 71  KFYQYDEGKLSKLRASIVSAHGFTKLAKVIALQDYLRVSSSEEISKGREKPSILSSAFEA 130

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           L+A +YL+ G+            +    L       D KT LQE   A+F V P Y++  
Sbjct: 131 LMAGVYLEAGLAKVRKITQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLK 190

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             GPDH   F + + I     A     SK+ AEQ  A + L++ 
Sbjct: 191 EKGPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKL 234


>gi|71737399|ref|YP_276084.1| ribonuclease III [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|90101635|sp|Q48EV3|RNC_PSE14 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|71557952|gb|AAZ37163.1| ribonuclease III [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 229

 Score =  244 bits (625), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 79/214 (36%), Positives = 112/214 (52%), Gaps = 6/214 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           ++  S LE+++GY F ++ L+  ALTH S +     + ERLEFLGD IL  +    LF  
Sbjct: 2   SVSLSRLERQLGYTFKDQELMVLALTHRSFA---GRNNERLEFLGDAILNFVAGEALFER 58

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F  A+EG+LS     LV  ET + +AR  DL  ++R+ S   K       SI AD +E+L
Sbjct: 59  FPQAREGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADALEAL 118

Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           I A+YLD G+E A   V  +      +L      +D KT LQE+  ++    P Y+V   
Sbjct: 119 IGAIYLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACELPRYEVVDI 178

Query: 181 SGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213
            G  H   F V  EI+ L   ++G   S+R AEQ
Sbjct: 179 HGEPHCRTFFVECEINLLNEKSRGQGVSRRIAEQ 212


>gi|296331168|ref|ZP_06873642.1| ribonuclease III [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|296151812|gb|EFG92687.1| ribonuclease III [Bacillus subtilis subsp. spizizenii ATCC 6633]
          Length = 213

 Score =  244 bits (625), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 66/204 (32%), Positives = 98/204 (48%), Gaps = 5/204 (2%)

Query: 25  KALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
           +A THSS  + ++    E  ERLEFLGD +L L IS  LF  + +  EG+L+    ++V 
Sbjct: 3   QAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISRFLFAKYPAMSEGDLTKLRAAIVC 62

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140
             +   +A EL     + +             ++ ADV E+ I ALYLD G+E   +F+ 
Sbjct: 63  EPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFEAFIGALYLDQGLEPVESFLK 122

Query: 141 KYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
            Y   +          D K++LQE+       + EYK+T   GP H+  F  +V + G  
Sbjct: 123 VYVFPKINDGAFSHVMDFKSQLQEYVQRDGKGSLEYKITNEKGPAHNREFEAIVSLKGEP 182

Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223
              G   SK+ AEQ AA E L + 
Sbjct: 183 LGVGNGRSKKEAEQHAAQEALAKL 206


>gi|325478725|gb|EGC81836.1| ribonuclease III [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 236

 Score =  244 bits (625), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 121/224 (54%), Gaps = 6/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFN 61
           +    E +IGY+F ++ L++ A THSS ++  +   +S ERLEFLGD IL +++S +LF 
Sbjct: 10  KIEEFENKIGYSFNDKELIDVAFTHSSYTNEARGESKSNERLEFLGDSILDMIVSEILFK 69

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           H+++  EG L+   + LV   + ++   + D++S++      ++        ++AD  E+
Sbjct: 70  HYNNKPEGWLTKTRSRLVCTSSFAKACEKFDMSSYLNFGKGEKEHGGHLKKHVKADTFEA 129

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA---LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           + AA+YLD   E     + K +K+ A   +       D KT+LQE+ +AK     +Y++ 
Sbjct: 130 VCAAIYLDSSYEKLFDILVKNYKEEALVIINDDSIFNDYKTKLQEYHNAKDKKILKYELV 189

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              GP+H   FT+ V++     A G+  +K+ AEQ AA     +
Sbjct: 190 KEEGPEHAKTFTMAVKLGNRILATGVGKNKKQAEQDAAKAAYNK 233


>gi|283953747|ref|ZP_06371278.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 414]
 gi|283794788|gb|EFC33526.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 414]
          Length = 224

 Score =  244 bits (625), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 124/222 (55%), Gaps = 4/222 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               LE+ + Y F +++LL  ALTH S   SY  + ERLEFLGD +L L++   LF+ F 
Sbjct: 3   NIEKLEQNLTYEFKDKNLLMHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLFHKFA 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+LS    +LV+ ++ +++A  L+L  FI +S     +     +SI +D +E++I 
Sbjct: 61  KDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGKEKSSILSDALEAIIG 120

Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A++L+ G E A T   +  ++    + +    +D KT+LQE    K G TP+Y+     G
Sbjct: 121 AIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFG 180

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           PDH  +F + + + G   A+ +  SK+ A+Q+AA   L++ G
Sbjct: 181 PDHLKQFEIALMLDGKEIARAIAGSKKEAQQMAAKIALEKLG 222


>gi|227890689|ref|ZP_04008494.1| ribonuclease III [Lactobacillus salivarius ATCC 11741]
 gi|227867627|gb|EEJ75048.1| ribonuclease III [Lactobacillus salivarius ATCC 11741]
          Length = 232

 Score =  244 bits (625), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 110/230 (47%), Gaps = 7/230 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES------YERLEFLGDRILGLL 54
           M       L++     F +  LL+ A TH+S  +   E       YER+EFLGD ++ L 
Sbjct: 1   MIEGLQEMLKRDFDITFKDVDLLDAAFTHASYVNETPERKKKLKYYERIEFLGDAVMQLC 60

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
           +S  ++ H+    EG++S    ++V A++ S+ A E     +IR+     K       S+
Sbjct: 61  VSEYIYEHYPEMPEGKMSRLRAAMVRADSFSKFAIECHFNEYIRLGKGEEKGNARQRPSL 120

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTP 173
             D+ ES I ALYLD G +    F+ K    +  L       D KTELQE          
Sbjct: 121 LCDIFESFIGALYLDQGKDEVVRFISKVIFPKLELGWFDHMMDNKTELQEVLQQNGECKI 180

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +Y     +GPD++  +T+ V ++     +G   +K+AAEQ+AA + LK+ 
Sbjct: 181 KYNEVNVTGPDNERVYTMNVVVNNEVMGEGTGRTKKAAEQMAAYQALKKL 230


>gi|330502445|ref|YP_004379314.1| ribonuclease III [Pseudomonas mendocina NK-01]
 gi|328916731|gb|AEB57562.1| ribonuclease III [Pseudomonas mendocina NK-01]
          Length = 229

 Score =  244 bits (625), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 77/218 (35%), Positives = 109/218 (50%), Gaps = 11/218 (5%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           MS    S LE+++GY+F ++ L+  ALTH S +     + ERLEFLGD IL  +    LF
Sbjct: 1   MSP-NLSRLERKLGYSFKDQDLMVLALTHRSFA---GRNNERLEFLGDAILNFVAGEALF 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A+EG+LS     LV  ET + +AR  +L  ++R+ S   K       SI AD +E
Sbjct: 57  ERFPQAREGQLSRLRARLVKGETLAVLARGFELGEYLRLGSGELKSGGFRRESILADALE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI A+YLD G+E A   V  +       L      +D KT LQE+  ++    P Y+V 
Sbjct: 117 ALIGAIYLDAGMEAARERVLDWLTGELDGLTLVDTNKDPKTRLQEFLQSRACELPRYEVV 176

Query: 179 FRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQ 213
              G  H   F V  ++   +      G   S+R AEQ
Sbjct: 177 DVQGEPHCRTFMVECQVALLNEKTL--GQGGSRRIAEQ 212


>gi|239991059|ref|ZP_04711723.1| ribonuclease III [Streptomyces roseosporus NRRL 11379]
 gi|291448061|ref|ZP_06587451.1| ribonuclease III [Streptomyces roseosporus NRRL 15998]
 gi|291351008|gb|EFE77912.1| ribonuclease III [Streptomyces roseosporus NRRL 15998]
          Length = 274

 Score =  244 bits (625), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 77/224 (34%), Positives = 119/224 (53%), Gaps = 6/224 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           +A  ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L
Sbjct: 16  TASSHTLLEGRLGYHLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 74

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +       EG+L+    ++V++   ++V R L+L SFIR+             SI AD +
Sbjct: 75  YRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTL 134

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD G+  A   V + +     +S       D KT LQE   ++    PEY V
Sbjct: 135 EAVIGAVYLDQGLSAASELVHRLFDPLIDRSSNLGAGLDWKTSLQELTASESLGVPEYLV 194

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           T  +GPDH+  FT    + G++   G   SK+ AEQ AA    +
Sbjct: 195 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWR 237


>gi|156740401|ref|YP_001430530.1| ribonuclease III [Roseiflexus castenholzii DSM 13941]
 gi|254807896|sp|A7NGC5|RNC_ROSCS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|156231729|gb|ABU56512.1| Ribonuclease III [Roseiflexus castenholzii DSM 13941]
          Length = 234

 Score =  244 bits (625), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 76/227 (33%), Positives = 116/227 (51%), Gaps = 8/227 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE------SYERLEFLGDRILGLLISTLL 59
              L  R+   F+++ LL +ALTH S  +   +      S ERLEFLGD I+  L +TL+
Sbjct: 5   LDELCARLDVTFSDQRLLWQALTHRSFLNERVDERLSLFSNERLEFLGDAIVNFLATTLV 64

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F  F  A EG L+    +L+  ET +  AR  DL S   ++            S+ AD  
Sbjct: 65  FERFPDAGEGYLTAWRAALIRTETLASFARRYDLGSHTLLARGEESSGARQRPSLLADTF 124

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E+++AA+++D G++    F+   +++    L+      D K++LQ    A+ G+TP Y++
Sbjct: 125 EAVVAAIFIDQGLDAVRKFLLPLFEETLATLQEQGLPVDYKSKLQARIQAERGITPRYRM 184

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             RSGP+H P FT        +   G   SK+AAEQ AA + L R G
Sbjct: 185 IERSGPEHQPEFTFEALAGDESLGTGRGASKQAAEQDAARDALDRLG 231


>gi|329936742|ref|ZP_08286449.1| ribonuclease III [Streptomyces griseoaurantiacus M045]
 gi|329303972|gb|EGG47855.1| ribonuclease III [Streptomyces griseoaurantiacus M045]
          Length = 273

 Score =  244 bits (625), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 117/224 (52%), Gaps = 6/224 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           +A  ++ LE R+GY     +LL +ALTH S ++      + ERLEFLGD +LGL+++  L
Sbjct: 23  AASSHTLLEGRLGYRLE-TALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 81

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +       EG+L+    ++V++   ++V R L+L SF+R+             SI AD +
Sbjct: 82  YRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFVRLGRGEEGTGGRDKASILADTL 141

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD G++ A   V + +     KS       D KT LQE    +    PEY +
Sbjct: 142 EAVIGAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEY-L 200

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              +GPDH+  FT    + G++   G   SK+ AEQ AA    +
Sbjct: 201 VSETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWR 244


>gi|326776326|ref|ZP_08235591.1| ribonuclease III [Streptomyces cf. griseus XylebKG-1]
 gi|326656659|gb|EGE41505.1| ribonuclease III [Streptomyces cf. griseus XylebKG-1]
          Length = 274

 Score =  244 bits (625), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 77/224 (34%), Positives = 119/224 (53%), Gaps = 6/224 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           +A  ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L
Sbjct: 16  TASSHTLLEGRLGYHLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 74

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +       EG+L+    ++V++   ++V R L+L SFIR+             SI AD +
Sbjct: 75  YRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTL 134

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD G+  A   V + +     +S       D KT LQE   ++    PEY V
Sbjct: 135 EAVIGAVYLDQGLSAASELVHRLFDPLIDRSSNLGAGLDWKTSLQELTASESLGVPEYLV 194

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           T  +GPDH+  FT    + G++   G   SK+ AEQ AA    +
Sbjct: 195 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWR 237


>gi|227544367|ref|ZP_03974416.1| ribonuclease III [Lactobacillus reuteri CF48-3A]
 gi|300909772|ref|ZP_07127233.1| ribonuclease III [Lactobacillus reuteri SD2112]
 gi|227185630|gb|EEI65701.1| ribonuclease III [Lactobacillus reuteri CF48-3A]
 gi|300893637|gb|EFK86996.1| ribonuclease III [Lactobacillus reuteri SD2112]
          Length = 233

 Score =  244 bits (625), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 106/229 (46%), Gaps = 7/229 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M       L K     F N +LL +A T +S  + +     + YER+EFLGD +L L++S
Sbjct: 1   MIKELQDYLAKEFNIHFDNPALLAEAFTQASYVNEHPNQGLKYYERIEFLGDAVLELIVS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             ++  F    +G+L+    ++V  ++ S+ A+E     +IR+              +  
Sbjct: 61  EYIYKRFPELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGHGEEMAGARERPGLLC 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D+ ES I ALYLD G      FV +    + L  G F    DAKT LQE+      +  E
Sbjct: 121 DIFESFIGALYLDQGRPAVEKFVQRVIFPK-LDMGWFDHAVDAKTSLQEFLQRDGDIAIE 179

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           Y +   SG ++DP F V V  +G    +G   SK+ AE  AA + L   
Sbjct: 180 YHLVEESGTENDPEFKVNVTANGDVIGEGKGSSKKHAEMQAAQQALDNM 228


>gi|315648181|ref|ZP_07901282.1| ribonuclease III [Paenibacillus vortex V453]
 gi|315276827|gb|EFU40170.1| ribonuclease III [Paenibacillus vortex V453]
          Length = 232

 Score =  244 bits (625), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 63/210 (30%), Positives = 98/210 (46%), Gaps = 5/210 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
               L+ ++   F N  LL++A TH+S  + ++    +  ERLEFLGD +L L +S  L+
Sbjct: 4   DLKQLQHKLQIQFRNAMLLKQAFTHASYVNEHRFSQSQDNERLEFLGDAVLELTVSEFLY 63

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N F    EGEL+    ++V   +  Q A  LD   ++ +             ++ ADV E
Sbjct: 64  NLFPDRPEGELTKLRAAIVCEPSLVQFAVGLDFGRYVLLGKGEEMTGGRTRPALLADVFE 123

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTF 179
           S + ALYLD G+E    F+  +       +G+ +  D KTELQE          EY++  
Sbjct: 124 SFVGALYLDQGLEAVRRFLSDHVFPSVTVNGRPQMSDYKTELQELTQHHGMGALEYRIVE 183

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
             GP H+  F   V +      +G   SK+
Sbjct: 184 ERGPAHEREFVSEVYMGSECLGRGSGRSKK 213


>gi|289768866|ref|ZP_06528244.1| ribonuclease III [Streptomyces lividans TK24]
 gi|289699065|gb|EFD66494.1| ribonuclease III [Streptomyces lividans TK24]
          Length = 276

 Score =  244 bits (625), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 118/223 (52%), Gaps = 6/223 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLF 60
           A  ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L+
Sbjct: 28  ASSHTLLEGRLGYQLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLY 86

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                  EG+L+    ++V++   ++V R L+L SFIR+             SI AD +E
Sbjct: 87  RTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTLE 146

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD G++ A   V + +     KS       D KT LQE    +    PEY VT
Sbjct: 147 AVIGAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLVT 206

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             +GPDH+  FT    + G++   G   SK+ AEQ AA    +
Sbjct: 207 -ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWR 248


>gi|439871|gb|AAA69690.1| ribonuclease [Coxiella burnetii]
          Length = 233

 Score =  244 bits (625), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 74/219 (33%), Positives = 125/219 (57%), Gaps = 7/219 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            + L +R+G+ F N  LL+ ALTH S   S  ++ ERLEFLGD +LG +I++ L+     
Sbjct: 4   LNKLMERLGHQFNNLELLKIALTHCS---SGADNNERLEFLGDSVLGFIIASELYQRRPQ 60

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A+EG+LS    S+V+ +  +Q++ +L +  ++++    +K       SI AD +E+++ A
Sbjct: 61  AREGDLSRMRASMVNGDELAQMSTKLGINEYLQLGVGEQKSGGKRRRSILADALETIVGA 120

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +Y+D G+E     V  ++ +R     K   ++DAK+ LQEW  A+    P Y+V   +G 
Sbjct: 121 IYIDAGLETCRRCVLNWYGERVDDLSKLSPKKDAKSLLQEWLQARRLPLPTYEV-KITGE 179

Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221
            H   FTV   + GL    +G++ ++R AEQ+AA   L+
Sbjct: 180 AHAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAKRFLE 218


>gi|317401886|gb|EFV82493.1| ribonuclease 3 [Achromobacter xylosoxidans C54]
          Length = 253

 Score =  244 bits (625), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 72/221 (32%), Positives = 111/221 (50%), Gaps = 6/221 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  +TLE R+ + F + +LLE+ALTH S         ERLEFLGD +L  +++ +LF  +
Sbjct: 1   MSLATLENRLDHHFGDPALLEQALTHRS---HGARHNERLEFLGDSVLNFVVAAMLFERY 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV   + + +A+ L+L+ ++R+     K       SI AD VE+L 
Sbjct: 58  SKIDEGDLSRLRANLVKQASLADIAQRLELSQYLRLGEGELKSGGFRRPSILADTVEALF 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LD G + A   + + ++     +      +DAKT LQE+   +    P Y V    
Sbjct: 118 GAVFLDAGFDAARRVIVRQYQPVLASVDPKTLGKDAKTLLQEFLQGRKLALPVYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221
           G  H  +F V   I  L         S+RAAEQ AA   L+
Sbjct: 178 GAAHSQQFEVECAIPALEIKVNAPGASRRAAEQSAAKLALE 218


>gi|283798076|ref|ZP_06347229.1| ribonuclease III [Clostridium sp. M62/1]
 gi|291074218|gb|EFE11582.1| ribonuclease III [Clostridium sp. M62/1]
 gi|295091753|emb|CBK77860.1| RNAse III [Clostridium cf. saccharolyticum K10]
 gi|295114861|emb|CBL35708.1| RNAse III [butyrate-producing bacterium SM4/1]
          Length = 234

 Score =  244 bits (625), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 115/227 (50%), Gaps = 5/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M    +  LE +I Y F ++SL+E A++HSS ++          ERLEFLGD +L ++ S
Sbjct: 1   MPREHFRELEDKIHYCFKDKSLIELAMSHSSYANEKHLGKLGCNERLEFLGDAVLEIVSS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF+ F    EG+L+    S+V   T +  A ++ L  ++ +             S+ +
Sbjct: 61  DFLFHRFPDMPEGDLTKTRASMVCEPTLAYCAEQIGLGGYLLLGKGEDATGGRTRNSVVS 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D +E+LI A+YLDGG   A  F+  Y     ++  K   D+KT LQE   A+      Y+
Sbjct: 121 DAMEALIGAIYLDGGFSCAKEFILNYVL-NDMEHKKLFYDSKTILQEMVQARGTELLSYE 179

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +    GPDH+  F V   I     ++G   +K+AAEQ+AA + + + 
Sbjct: 180 LLKEEGPDHNKTFEVAALIGEREVSRGAGRTKKAAEQMAAYQAILKL 226


>gi|329890079|ref|ZP_08268422.1| ribonuclease III [Brevundimonas diminuta ATCC 11568]
 gi|328845380|gb|EGF94944.1| ribonuclease III [Brevundimonas diminuta ATCC 11568]
          Length = 238

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 86/228 (37%), Positives = 127/228 (55%), Gaps = 5/228 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTL 58
           A   + L +R+G+ F + SLLE+ALTHSS+            ERLEFLGDR+LGLL++  
Sbjct: 10  AEAVAALRQRLGHDFEDASLLERALTHSSVGEGAGPQVPADNERLEFLGDRVLGLLVADR 69

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L   + SA EG+LS R ++LV    C++V   L +   +R+S    K        + AD 
Sbjct: 70  LVRDYPSADEGQLSARLHALVDKSACARVGERLGVGDALRLSPGETKTGGRRKAGVIADA 129

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKV 177
           VE+++AA+Y DGG+  A T  ++ W +           + K+ LQEWA  +    P Y+V
Sbjct: 130 VEAILAAVYRDGGLIAAQTVFERAWAEELAAPPSAAVTNPKSALQEWAQGQGRPLPTYEV 189

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
             R+G DH P FTV   ++G  PA+    S++ AE+ AA  +LKRE +
Sbjct: 190 VQRTGSDHAPTFTVEATVTGYEPARAQGRSRQEAEKAAAIALLKREDV 237


>gi|169350084|ref|ZP_02867022.1| hypothetical protein CLOSPI_00826 [Clostridium spiroforme DSM 1552]
 gi|169293297|gb|EDS75430.1| hypothetical protein CLOSPI_00826 [Clostridium spiroforme DSM 1552]
          Length = 226

 Score =  244 bits (624), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 62/224 (27%), Positives = 110/224 (49%), Gaps = 4/224 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLF 60
           +      + +   + +  + ++A TH+S ++  +     YERLEFLGD +L   +S  LF
Sbjct: 1   MELEKFLQAMEIPYHDIEIFKQAFTHTSYANENKLKNHDYERLEFLGDAVLQYHVSRYLF 60

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + + +  EG L+   + LV  E+ ++ ARELDL ++I + +    +      S+ AD+ E
Sbjct: 61  DLYPTMPEGRLTKLRSKLVREESLARFARELDLGTYIYLGAGEINNGGRDRDSVLADIFE 120

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + + A+  D G+E     + K   +           D KT+LQE   A    T  Y++  
Sbjct: 121 AFMGAICHDCGMEYVDMMLKKTIYRHVNDVNYDDITDFKTKLQELIQADQRKTVTYELLS 180

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +GP ++P F + V +  +    G+  SK+ AEQ AA + L + 
Sbjct: 181 ATGPSNNPVFEMAVRMDDMILGTGIGSSKKRAEQQAAKDALNKL 224


>gi|302558162|ref|ZP_07310504.1| ribonuclease III [Streptomyces griseoflavus Tu4000]
 gi|302475780|gb|EFL38873.1| ribonuclease III [Streptomyces griseoflavus Tu4000]
          Length = 272

 Score =  244 bits (624), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 118/223 (52%), Gaps = 6/223 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLF 60
           A  ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L+
Sbjct: 13  ASSHTLLEGRLGYRLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLY 71

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                  EG+L+    ++V++   ++V R L+L SFIR+             SI AD +E
Sbjct: 72  RTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTLE 131

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD G++ A   V + +     KS       D KT LQE    +    PEY VT
Sbjct: 132 AVIGAVYLDQGLDSAAELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLVT 191

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             +GPDH+  FT    + G++   G   SK+ AEQ AA    +
Sbjct: 192 -ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWR 233


>gi|117620609|ref|YP_855343.1| ribonuclease III [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117562016|gb|ABK38964.1| ribonuclease III [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 223

 Score =  244 bits (624), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 77/213 (36%), Positives = 114/213 (53%), Gaps = 7/213 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ ++ + L+ R+G+ F ++ LL +ALTH S    +    ERLEFLGD IL L+I+  LF
Sbjct: 1   MN-IKMNRLQSRLGHVFQDQELLTRALTHRSAGSRH---NERLEFLGDSILSLVIADDLF 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F  A EG+LS    +LV  +T +++ RE DL   + +     K       SI AD VE
Sbjct: 57  HRFPQAAEGDLSRMRATLVREKTLAELGREFDLGDHLILGPGELKSGGFRRESILADTVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD  +E   T +  ++  R   +K G  ++D KT LQE         P Y VT
Sbjct: 117 AVIGAVYLDTNLETVRTLLLGWYASRLDEIKPGIEQKDPKTRLQEILQGSRKSLPTYTVT 176

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  H+  FTV  ++ GL  P  G+  S+R 
Sbjct: 177 NVKGEAHNQEFTVQCDVEGLDGPLVGVGTSRRK 209


>gi|119503988|ref|ZP_01626069.1| ribonuclease III [marine gamma proteobacterium HTCC2080]
 gi|119459991|gb|EAW41085.1| ribonuclease III [marine gamma proteobacterium HTCC2080]
          Length = 229

 Score =  244 bits (624), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 72/222 (32%), Positives = 109/222 (49%), Gaps = 5/222 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +  +L+ R+GY+F +  +L+ ALTH S     + + ERLEFLGD  +  +I+  L+  F 
Sbjct: 9   QLLSLQNRLGYSFQDLQILKLALTHRSAG---RTNNERLEFLGDSFVNHVIAQRLYLQFP 65

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            A EG+L+   + LV     + +  +  L   + +    RK       SI AD VE++  
Sbjct: 66  KASEGQLTRLRSKLVRGTFLAALGEKYALGECLTLGVGERKSGGRHRASILADTVEAIAG 125

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           A+ LD G E A   +  ++     +      +D+KT LQEW  A+    P Y +    GP
Sbjct: 126 AMLLDAGYENAAPVILHWFADALGELQVDGDKDSKTLLQEWLQARNLPLPSYDLVSVEGP 185

Query: 184 DHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKREG 224
           DH   F VV  I+G   A  G   S+R AEQ AA+  +   G
Sbjct: 186 DHAQEFEVVCLINGQKNAFSGRGSSRRNAEQQAASVAIGELG 227


>gi|224438391|ref|ZP_03659318.1| ribonuclease III [Helicobacter cinaedi CCUG 18818]
 gi|313144833|ref|ZP_07807026.1| ribonuclease 3 [Helicobacter cinaedi CCUG 18818]
 gi|313129864|gb|EFR47481.1| ribonuclease 3 [Helicobacter cinaedi CCUG 18818]
          Length = 242

 Score =  244 bits (624), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 118/223 (52%), Gaps = 4/223 (1%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
                  LEK++GY F ++ LL +ALTH S  ++Y  + ERLEFLGD +L LL+   LF 
Sbjct: 6   PPKNAQALEKKLGYTFKDKKLLLEALTHKSCKNAY--NNERLEFLGDAVLDLLVGEFLFR 63

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F SAKEGELS     +V+ +   ++A+ LDL +F+ +S     +      SI ++  E+
Sbjct: 64  KFPSAKEGELSKLRACIVNEKGFMKLAKSLDLGAFLHISQSEEHNKGREKASILSNAFEA 123

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           L+ A+YL+  +      V K  +Q   K        D KT LQE   A FG  P Y +  
Sbjct: 124 LMGAIYLESELTFLKDIVLKLLEQNYAKIDLRSLFTDYKTALQELTQAIFGEIPTYTLVS 183

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            SGPDH   F + + ++G+  A+    SK+ A+Q +A    ++
Sbjct: 184 ESGPDHQKSFEIALSVNGVEYARAKGSSKKDAQQKSAQIAYEK 226


>gi|29829207|ref|NP_823841.1| ribonuclease III [Streptomyces avermitilis MA-4680]
 gi|81719920|sp|Q82JT9|RNC_STRAW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|29606313|dbj|BAC70376.1| putative ribonuclease III [Streptomyces avermitilis MA-4680]
          Length = 276

 Score =  244 bits (624), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 80/224 (35%), Positives = 120/224 (53%), Gaps = 6/224 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           +A  ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L
Sbjct: 17  TASSHTLLEGRLGYKLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 75

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +       EG+L+    ++V++   ++V R L+L SFIR+             SI AD +
Sbjct: 76  YRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTL 135

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD G+E AG  V + +     KS       D KT LQE    +    PEY V
Sbjct: 136 EAVIGAVYLDQGLEAAGELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLV 195

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           T  +GPDH+  FT    + G++   G   SK+ AEQ AA    +
Sbjct: 196 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWR 238


>gi|90101636|sp|Q4KHT1|RNC_PSEF5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
          Length = 229

 Score =  244 bits (624), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 78/214 (36%), Positives = 113/214 (52%), Gaps = 6/214 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           ++  S LE+++GY+F ++ L+  ALTH S +     + ERLEFLGD IL  +    LF  
Sbjct: 2   SVSLSRLERQLGYSFKDQELMLLALTHRSFA---GRNNERLEFLGDAILNFVAGEALFER 58

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F  A+EG+LS     LV  ET + +AR  DL  ++R+ S   K       SI AD +E+L
Sbjct: 59  FPQAREGQLSRLRARLVKGETLAVLARGFDLGEYLRLGSGELKSGGFRRESILADALEAL 118

Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           I A+YLD G+E A   V  +      +L      +D KT LQE+  ++    P Y+V   
Sbjct: 119 IGAIYLDAGMETARDRVLSWLASEFESLTLVDTNKDPKTRLQEFLQSRACELPRYEVVDI 178

Query: 181 SGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213
            G  H   F V  E++ L   ++G   S+R AEQ
Sbjct: 179 QGEPHCRTFFVECEVTLLNEKSRGQGVSRRIAEQ 212


>gi|315586658|gb|ADU41039.1| ribonuclease III [Helicobacter pylori 35A]
          Length = 238

 Score =  244 bits (624), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 79/224 (35%), Positives = 116/224 (51%), Gaps = 4/224 (1%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +   Y TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++
Sbjct: 13  TNSSYITLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYH 70

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F    EG+LS    S+VSA   +++A+ + L  ++RVSS           SI +   E+
Sbjct: 71  KFYQYDEGKLSKLRASIVSAHGFTKLAKVIALQDYLRVSSSEEISKGREKPSILSSAFEA 130

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           L+A +YL+ G+      +     +    L       D KT LQE   A+F V P Y++  
Sbjct: 131 LMAGVYLEAGLAKVCKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLK 190

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             GPDH   F + + I     A     SK+ AEQ  A + L++ 
Sbjct: 191 EKGPDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKL 234


>gi|240169618|ref|ZP_04748277.1| ribonuclease III [Mycobacterium kansasii ATCC 12478]
          Length = 241

 Score =  244 bits (624), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 83/230 (36%), Positives = 115/230 (50%), Gaps = 10/230 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58
           M+A R S L   +G   ++  LL  ALTH S ++      + ERLEFLGD +LGL I+  
Sbjct: 1   MTASRQSLL-DALGVDLSD-ELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDE 58

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQ 115
           L++      EG+L+    S+V+ +  + VAR L    L   I +         +  +SI 
Sbjct: 59  LYHRHPDRSEGDLAKLRASVVNTQALADVARNLSDNGLGVHILLGRGEANTGGADKSSIL 118

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTP 173
           AD +ESL+ A+YL  GIEV+   + K +      +       D KT LQE   A+   TP
Sbjct: 119 ADGMESLLGAIYLQHGIEVSRKVILKLFGPLLDAAATLGAGLDWKTSLQELTAARGLGTP 178

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            Y VT  +GPDHD  FT VV +       GM  SK+ AEQ AA+   K  
Sbjct: 179 SYLVTS-TGPDHDKEFTAVVVVMDAEYGSGMGRSKKEAEQKAASAAYKAL 227


>gi|182435701|ref|YP_001823420.1| ribonuclease III [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|178464217|dbj|BAG18737.1| putative ribonuclease III [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 274

 Score =  244 bits (624), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 77/224 (34%), Positives = 119/224 (53%), Gaps = 6/224 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           +A  ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L
Sbjct: 16  TASSHTLLEGRLGYHLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 74

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +       EG+L+    ++V++   ++V R L+L SFIR+             SI AD +
Sbjct: 75  YRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTL 134

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD G+  A   V + +     +S       D KT LQE   ++    PEY V
Sbjct: 135 EAVIGAVYLDQGLSAASELVHRLFDPLIDRSSNLGAGLDWKTSLQELTASESLGVPEYLV 194

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           T  +GPDH+  FT    + G++   G   SK+ AEQ AA    +
Sbjct: 195 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWR 237


>gi|21223928|ref|NP_629707.1| ribonuclease III [Streptomyces coelicolor A3(2)]
 gi|256784973|ref|ZP_05523404.1| ribonuclease III [Streptomyces lividans TK24]
 gi|7531197|sp|Q9ZBQ7|RNC_STRCO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|4007731|emb|CAA22415.1| ribonuclease III [Streptomyces coelicolor A3(2)]
          Length = 272

 Score =  244 bits (623), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 118/223 (52%), Gaps = 6/223 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLF 60
           A  ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L+
Sbjct: 24  ASSHTLLEGRLGYQLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLY 82

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                  EG+L+    ++V++   ++V R L+L SFIR+             SI AD +E
Sbjct: 83  RTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTLE 142

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD G++ A   V + +     KS       D KT LQE    +    PEY VT
Sbjct: 143 AVIGAVYLDQGLDAASELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEYLVT 202

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             +GPDH+  FT    + G++   G   SK+ AEQ AA    +
Sbjct: 203 -ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWR 244


>gi|322379758|ref|ZP_08054068.1| ribonuclease III [Helicobacter suis HS5]
 gi|321147829|gb|EFX42419.1| ribonuclease III [Helicobacter suis HS5]
          Length = 224

 Score =  244 bits (623), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 72/220 (32%), Positives = 111/220 (50%), Gaps = 4/220 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           + TL+KR+GY F +  LL++ALTH S      ++ ERLEFLGD +L L+++ +LF  F  
Sbjct: 2   FETLQKRLGYVFKDPLLLQQALTHRST--KAHKNNERLEFLGDAVLDLVVAEILFTRFTD 59

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
            +EG+LS    SLV+ +   ++A  L+L   I +S     +      SI +   E+L+ A
Sbjct: 60  LQEGDLSKMRASLVNEKAFFKLALSLNLQDHILISQAEANNNGHTKPSILSSAFEALMGA 119

Query: 126 LYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YL+ G+E+    +          L       D K+ LQE   A+F   P Y +   SGP
Sbjct: 120 IYLESGLEIIKNLIQDLLDMAYPNLSPKTLFMDYKSALQELTQARFKAIPIYALKSESGP 179

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           DH  +F + + I           SK+ AEQ+ A    K+ 
Sbjct: 180 DHAKQFEMQIFILNKLYGTCKAGSKKQAEQLCAQVAYKQL 219


>gi|227550768|ref|ZP_03980817.1| ribonuclease III [Enterococcus faecium TX1330]
 gi|314937654|ref|ZP_07844980.1| ribonuclease III [Enterococcus faecium TX0133a04]
 gi|314942847|ref|ZP_07849660.1| ribonuclease III [Enterococcus faecium TX0133C]
 gi|314948017|ref|ZP_07851421.1| ribonuclease III [Enterococcus faecium TX0082]
 gi|314950935|ref|ZP_07854004.1| ribonuclease III [Enterococcus faecium TX0133A]
 gi|314991417|ref|ZP_07856894.1| ribonuclease III [Enterococcus faecium TX0133B]
 gi|314995062|ref|ZP_07860182.1| ribonuclease III [Enterococcus faecium TX0133a01]
 gi|227180086|gb|EEI61058.1| ribonuclease III [Enterococcus faecium TX1330]
 gi|313590788|gb|EFR69633.1| ribonuclease III [Enterococcus faecium TX0133a01]
 gi|313593897|gb|EFR72742.1| ribonuclease III [Enterococcus faecium TX0133B]
 gi|313596944|gb|EFR75789.1| ribonuclease III [Enterococcus faecium TX0133A]
 gi|313598319|gb|EFR77164.1| ribonuclease III [Enterococcus faecium TX0133C]
 gi|313643031|gb|EFS07611.1| ribonuclease III [Enterococcus faecium TX0133a04]
 gi|313645615|gb|EFS10195.1| ribonuclease III [Enterococcus faecium TX0082]
          Length = 231

 Score =  244 bits (623), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 58/214 (27%), Positives = 98/214 (45%), Gaps = 5/214 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M       L++     F + +LLE+A THSS  + ++       ERLEFLGD +L L++S
Sbjct: 4   MDNQLTKELKENYNIVFHDLNLLEQAFTHSSYVNEHRNLQLSDNERLEFLGDAVLELMVS 63

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  +    EG+L+    ++V  ++ S+ A+E     ++ +             ++  
Sbjct: 64  QYLFRLYPHLPEGKLTKTRAAIVREDSLSKFAKECHFDQYVLLGKGEENSGGRTRPALLC 123

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + ALYLD G +    F++K    +          D KT+LQE       V+ EY
Sbjct: 124 DLFEAFLGALYLDQGFDTTHAFIEKVIFPKVKAGAFSHEMDHKTKLQEVLQKSGDVSIEY 183

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           ++    GP H+  F + V +       G   SK+
Sbjct: 184 RLINEEGPAHERVFWIEVYVDDQLIGTGQGKSKK 217


>gi|109947401|ref|YP_664629.1| ribonuclease III [Helicobacter acinonychis str. Sheeba]
 gi|122973320|sp|Q17XJ6|RNC_HELAH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|109714622|emb|CAJ99630.1| ribonuclease III (RNase III) [Helicobacter acinonychis str. Sheeba]
          Length = 234

 Score =  244 bits (623), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 80/220 (36%), Positives = 117/220 (53%), Gaps = 4/220 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++ F  
Sbjct: 13  YITLEKALGYSFKDKHLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 70

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA+  +++AR + L  ++RVSS           SI +   E+L+A 
Sbjct: 71  YDEGKLSKLRASIVSAQGFTKLARAISLQDYLRVSSSEETSKGREKPSILSSAFEALMAG 130

Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YL+ G++     +     +    L       D KT LQE   A+F V P Y++    GP
Sbjct: 131 VYLEAGLDKVRKIMQNLLNRAYKRLDLEHLSVDYKTALQELTQAQFCVIPTYQLLKEKGP 190

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            H   F +V+ I     A     SK+ AEQ  A + L++ 
Sbjct: 191 AHHKEFEMVLYIQNQMYATAKGKSKKEAEQQCAYQALQKL 230


>gi|87118656|ref|ZP_01074555.1| ribonuclease III [Marinomonas sp. MED121]
 gi|86166290|gb|EAQ67556.1| ribonuclease III [Marinomonas sp. MED121]
          Length = 217

 Score =  244 bits (623), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 84/210 (40%), Positives = 115/210 (54%), Gaps = 6/210 (2%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           GY FA+  LLE ALTH S      ++ ERLEFLGD IL  +I+  LF+ F  AKEGELS 
Sbjct: 2   GYFFADLGLLELALTHRSFG---GKNNERLEFLGDSILNYVIAEDLFHRFPKAKEGELSR 58

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
              SLV  ET +++ARE  L  ++++ +   K       SI  D VE +I A++LD G++
Sbjct: 59  LRASLVKGETLAEIAREFKLGDYLKLGAGELKSGGFRRDSILEDAVEGIIGAIFLDAGMD 118

Query: 134 VAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
                +  +++ R  A       +DAKT LQE+  A+    P+Y+VT   G  HD  F V
Sbjct: 119 TCSERILSWYESRLNATSLKIVTKDAKTRLQEFLQARKHALPQYEVTEVLGEPHDQTFYV 178

Query: 192 VVEISGLA-PAQGMDCSKRAAEQVAAAEVL 220
              I   A P +G   S+R AEQ AA + L
Sbjct: 179 HCVIELFADPIEGKGNSRRIAEQKAATQAL 208


>gi|40063418|gb|AAR38229.1| ribonuclease III [uncultured marine bacterium 580]
          Length = 231

 Score =  244 bits (623), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 111/223 (49%), Gaps = 6/223 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M       LEK I Y F +  LL  A+TH S       + ERLEFLGD IL  +++ LLF
Sbjct: 1   METKELKILEKSIKYKFKDDKLLALAMTHRS---HSGMNNERLEFLGDSILNFVVADLLF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F+   EG+LS   + LV  E  S++  EL +  F+ +     K       SI AD  E
Sbjct: 58  KKFNDLDEGDLSRLRSQLVKEEPLSKLGNELKIGDFLNLGVGELKSSGWRRPSILADAFE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI A+++DGG++ A  F++  +      +   +  +D KT LQE+  A+    P Y+V 
Sbjct: 118 ALIGAIFIDGGMKSAYKFIEDSYADLIEKINPKEIYKDPKTILQEFLQAQKVPLPSYEVI 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVL 220
              G  H+  FTV   +S      +G   S++ AEQ AA E +
Sbjct: 178 NVEGEAHNQLFTVTCVVSKFDVKVEGGGRSRKIAEQEAAKEAM 220


>gi|116492609|ref|YP_804344.1| ribonuclease III [Pediococcus pentosaceus ATCC 25745]
 gi|122265927|sp|Q03FX0|RNC_PEDPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|116102759|gb|ABJ67902.1| RNAse III [Pediococcus pentosaceus ATCC 25745]
          Length = 232

 Score =  244 bits (623), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 108/227 (47%), Gaps = 7/227 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M       L +     F N +LL++A T +S  + +     + YER+EFLGD +L L++S
Sbjct: 1   MIKALEDDLSQTFDIHFNNHALLDEAFTQASYVNEHPHQELKFYERIEFLGDAVLQLIVS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  +    +G+L+    ++V   + S  A+E     +IR+     K      +S+  
Sbjct: 61  EYLFKRYPEMPQGKLTRLRAAMVCEASFSDFAKECHFDQYIRLGKGEEKSGARQRSSLLC 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D+ ES I ALYLD G      FV      + L  GKF    D K+ELQE       V  +
Sbjct: 121 DIFESFIGALYLDQGRAAVERFVRIVIFPK-LDEGKFDHIIDHKSELQELLQKNGDVEID 179

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           Y++    GP++D  FTV V       A G   SK+ AEQ AA + L+
Sbjct: 180 YELVSEEGPENDLIFTVSVTADHKKLATGTGHSKKVAEQNAANQALQ 226


>gi|332673509|gb|AEE70326.1| ribonuclease III [Helicobacter pylori 83]
          Length = 239

 Score =  244 bits (623), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 79/221 (35%), Positives = 114/221 (51%), Gaps = 4/221 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++ F 
Sbjct: 17  SYITLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFY 74

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+LS    S+VSA   +++A+ + L  ++RVSS           SI +   E+L+A
Sbjct: 75  QYDEGKLSKLRASIVSAHGFTKLAKVIALQDYLRVSSSEEISKGREKPSILSSAFEALMA 134

Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
            +YL+ G+            +    L       D KT LQE   A+F V P Y++    G
Sbjct: 135 GVYLEAGLAKVRKITQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKEKG 194

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           PDH   F + + I     A     SK+ AEQ  A + L++ 
Sbjct: 195 PDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKL 235


>gi|187918561|ref|YP_001884124.1| ribonuclease III [Borrelia hermsii DAH]
 gi|119861409|gb|AAX17204.1| ribonuclease III [Borrelia hermsii DAH]
          Length = 243

 Score =  244 bits (623), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 72/222 (32%), Positives = 119/222 (53%), Gaps = 5/222 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFN 61
           +       +   F +  LL  +L+HSS ++ + +   + ERLEFLGD +L L+I+  L+ 
Sbjct: 15  KLDEFLMGLHIDFNDIDLLNMSLSHSSYANEFDQKYANNERLEFLGDSVLNLIITDYLYK 74

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +    EGELS   + +VS E+ S +AREL+L ++I +      +       I AD +E+
Sbjct: 75  FYPEKSEGELSKARSYIVSEESLSSIARELNLGNYILLGRGEENNDGRNKKGIIADAIEA 134

Query: 122 LIAALYLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            + ALYLDGG   A  FV + ++   R + +    +D K+ LQE+   K+ ++P Y++  
Sbjct: 135 FVGALYLDGGFLKASAFVVELFEVHIRLMFNRGDFKDYKSLLQEYVQKKYKISPNYRLAK 194

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             GPDH+  F V + ++    + G   SK+ AE +AA   LK
Sbjct: 195 ELGPDHNKIFCVELYVNDKFISNGKGKSKKEAEMIAAEMALK 236


>gi|325920677|ref|ZP_08182587.1| RNAse III [Xanthomonas gardneri ATCC 19865]
 gi|325548867|gb|EGD19811.1| RNAse III [Xanthomonas gardneri ATCC 19865]
          Length = 227

 Score =  244 bits (623), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 78/214 (36%), Positives = 110/214 (51%), Gaps = 6/214 (2%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           IG+AFA+  LL +AL H S    +    ERLEFLGD I+ LLI+  L+  +  A EG L+
Sbjct: 13  IGHAFADPGLLAQALRHRSAGTPH---NERLEFLGDGIVNLLIAEALYQRWPKADEGALT 69

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                LV     + + R L+L   + +     K       SI AD VE+++AA+YLD G 
Sbjct: 70  RARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDCGF 129

Query: 133 EVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           E     V  +++    AL  GK  +D KT LQEW  A+    P Y +   SG +H  +F 
Sbjct: 130 ERCREVVLPWFEPSLAALPVGKAEKDPKTRLQEWLQARQLPLPNYALISESGDEHAKQFH 189

Query: 191 VVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V   +   +A A+G   S+R AEQ AA  V+ + 
Sbjct: 190 VACILEQPVARAEGQGTSRRLAEQQAATLVIAQL 223


>gi|327479794|gb|AEA83104.1| ribonuclease III [Pseudomonas stutzeri DSM 4166]
          Length = 229

 Score =  244 bits (623), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 77/214 (35%), Positives = 110/214 (51%), Gaps = 6/214 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           +   + LE+++GY F ++ L+  ALTH S +     + ERLEFLGD IL  +    LFNH
Sbjct: 2   STSLARLERKLGYQFKDQELMLLALTHRSYA---GRNNERLEFLGDAILNFVAGEALFNH 58

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F  A+EG+LS     LV  ET + +AR  +L   +R+ S   K       SI AD +E+L
Sbjct: 59  FPQAREGQLSRLRARLVKGETLAVLARGFELGDHLRLGSGELKSGGYRRESILADTLEAL 118

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           I A+YLD G++VA   V  +       L      +D KT LQE+  ++    P Y+V   
Sbjct: 119 IGAIYLDAGMDVARERVIAWLANELQGLTLVDTNKDPKTRLQEFLQSRACELPRYEVVDI 178

Query: 181 SGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213
            G  H   F V  +++ L     G   S+R AEQ
Sbjct: 179 QGEPHCRTFFVECQVALLNDKTHGQGASRRIAEQ 212


>gi|46579851|ref|YP_010659.1| ribonuclease III [Desulfovibrio vulgaris str. Hildenborough]
 gi|81404810|sp|Q72C44|RNC_DESVH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|46449267|gb|AAS95918.1| ribonuclease III [Desulfovibrio vulgaris str. Hildenborough]
          Length = 253

 Score =  244 bits (623), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 74/219 (33%), Positives = 110/219 (50%), Gaps = 5/219 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNH 62
              L+K IG+ F +  LL  A+THSS ++      E  ERLEFLGD +L L +S  LF  
Sbjct: 29  VDELQKTIGHRFGDMELLLTAMTHSSWANEQAVPVEHNERLEFLGDAVLELCVSEELFRR 88

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F SA+EG+L+   + LVS  +   VAREL L   +R+             S+ +D +E++
Sbjct: 89  FPSAREGDLTRMRSRLVSKPSLEGVARELRLDMSLRLGKGEESQGGRERGSLLSDALEAM 148

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           + A++LD G   A   V +       ++      +D K++LQE     F   P Y +   
Sbjct: 149 LGAVFLDAGYIAAKGVVMRILGPHFPEALVPVRTKDYKSQLQELTQKLFRDRPVYTLLGS 208

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           SGP+HD +F V V +      +    S + AEQ+AAA  
Sbjct: 209 SGPEHDKQFDVRVVLPDGTVFEATGPSMKRAEQMAAARA 247


>gi|56698030|ref|YP_168401.1| ribonuclease III [Ruegeria pomeroyi DSS-3]
 gi|81349082|sp|Q5LNK5|RNC_SILPO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|56679767|gb|AAV96433.1| ribonuclease III [Ruegeria pomeroyi DSS-3]
          Length = 225

 Score =  244 bits (623), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 90/218 (41%), Positives = 130/218 (59%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           +      E R+GY+F    LL +ALTH SIS S ++  +RLEFLGDR+LGL+++T L   
Sbjct: 4   SAEMKAFEARLGYSFERPELLVRALTHGSISSSTRQDNQRLEFLGDRVLGLVMATALLEA 63

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
              A EG+L+ RFN+LV  ETC++VARE DL + +++             ++  D +E++
Sbjct: 64  DKDATEGQLAPRFNALVRKETCAEVAREADLGAVLKLGRSEMMSGGRRKLALLGDAMEAV 123

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           IAA+Y DGG   A   + + W  R  +     RDAKT LQEWA A+    P Y++  RSG
Sbjct: 124 IAAVYRDGGFAAAEAVILRLWGARVHQVEADARDAKTALQEWAQARGQTPPRYELVKRSG 183

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           PDH P FT++ E++    A+    +KR AEQ AA ++L
Sbjct: 184 PDHAPVFTILAELADGRRAEATAGAKRQAEQAAARKLL 221


>gi|148544383|ref|YP_001271753.1| ribonuclease III [Lactobacillus reuteri DSM 20016]
 gi|184153747|ref|YP_001842088.1| ribonuclease III [Lactobacillus reuteri JCM 1112]
 gi|194466493|ref|ZP_03072480.1| Ribonuclease III [Lactobacillus reuteri 100-23]
 gi|227363192|ref|ZP_03847326.1| ribonuclease III [Lactobacillus reuteri MM2-3]
 gi|325682703|ref|ZP_08162219.1| ribonuclease III [Lactobacillus reuteri MM4-1A]
 gi|189043324|sp|A5VKP2|RNC_LACRD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|229564353|sp|B2G826|RNC_LACRJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|148531417|gb|ABQ83416.1| RNAse III [Lactobacillus reuteri DSM 20016]
 gi|183225091|dbj|BAG25608.1| ribonuclease III [Lactobacillus reuteri JCM 1112]
 gi|194453529|gb|EDX42426.1| Ribonuclease III [Lactobacillus reuteri 100-23]
 gi|227071798|gb|EEI10087.1| ribonuclease III [Lactobacillus reuteri MM2-3]
 gi|324977053|gb|EGC14004.1| ribonuclease III [Lactobacillus reuteri MM4-1A]
          Length = 233

 Score =  244 bits (623), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 106/229 (46%), Gaps = 7/229 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M       L K     F N +LL +A T +S  + +     + YER+EFLGD +L L++S
Sbjct: 1   MIEELQDYLAKEFNIHFDNPALLAEAFTQASYVNEHPNQGLKYYERIEFLGDAVLELIVS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             ++  F    +G+L+    ++V  ++ S+ A+E     +IR+              +  
Sbjct: 61  EYIYKRFPELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGHGEEMAGARERPGLLC 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D+ ES I ALYLD G      FV +    + L  G F    DAKT LQE+      +  E
Sbjct: 121 DIFESFIGALYLDQGRPAVEKFVQRVIFPK-LDMGWFDHAVDAKTSLQEFLQRDGDIAIE 179

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           Y +   SG ++DP F V V  +G    +G   SK+ AE  AA + L   
Sbjct: 180 YHLVEESGTENDPEFKVNVTANGDVIGEGKGSSKKHAEMQAAQQALDNM 228


>gi|254779351|ref|YP_003057456.1| ribonuclease III [Helicobacter pylori B38]
 gi|254001262|emb|CAX29239.1| Ribonuclease III (RNase III) [Helicobacter pylori B38]
          Length = 232

 Score =  244 bits (623), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 80/220 (36%), Positives = 117/220 (53%), Gaps = 4/220 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y+TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++ F  
Sbjct: 11  YTTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 68

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA   +++A+ + L  ++RVSS           SI +   E+L+A 
Sbjct: 69  YDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRVSSSEEISNGREKPSILSSAFEALMAG 128

Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YL+ G+      +     +    L       D KT LQE   A+F V P Y++    GP
Sbjct: 129 VYLEAGLAKVRKIMQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLQEKGP 188

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           DH   F + + I     A     SK+ AEQ  A +VL++ 
Sbjct: 189 DHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQVLQKL 228


>gi|302874772|ref|YP_003843405.1| ribonuclease III [Clostridium cellulovorans 743B]
 gi|307690613|ref|ZP_07633059.1| ribonuclease III [Clostridium cellulovorans 743B]
 gi|302577629|gb|ADL51641.1| ribonuclease III [Clostridium cellulovorans 743B]
          Length = 235

 Score =  244 bits (623), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 80/220 (36%), Positives = 114/220 (51%), Gaps = 4/220 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNH 62
           R   LE+++  +F N  LL  ALTHSS  +   + +  ERLEFLGD +L L IS  LF  
Sbjct: 7   RIRILEEQLNVSFENIDLLNTALTHSSFVNQKKHIDYNERLEFLGDSVLQLTISEYLFKE 66

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
                EGEL+   + +V   +   V R+ ++ +F+ +S           TSI AD VE++
Sbjct: 67  LHGKSEGELTRLRSLIVCENSLHSVGRDWNIGNFLLMSKGEELTGGRSRTSILADAVEAV 126

Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           IAA+YLD G + A  F+  ++K+        K   D KT LQE       ++  YK+   
Sbjct: 127 IAAIYLDKGYDAAREFILLHFKEVINLALDNKIVLDYKTRLQEVLQKDGEISIAYKLEKY 186

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            GP H  RF V +E++      G   SK+ AEQ+AA EVL
Sbjct: 187 DGPPHRRRFFVNLEVANKVLGSGEGFSKKEAEQMAAKEVL 226


>gi|227530552|ref|ZP_03960601.1| ribonuclease III [Lactobacillus vaginalis ATCC 49540]
 gi|227349558|gb|EEJ39849.1| ribonuclease III [Lactobacillus vaginalis ATCC 49540]
          Length = 251

 Score =  244 bits (623), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 70/221 (31%), Positives = 105/221 (47%), Gaps = 7/221 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
           L K     F N  LL +A T +S  + +     + YER+EFLGD +L L++S  ++  F 
Sbjct: 27  LAKEFDIHFTNPDLLAEAFTQASYVNEHPHQGLKFYERIEFLGDAVLELIVSEYIYKRFP 86

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              +G+L+    ++V  ++ S+ A+E     +IR+              +  D+ ES I 
Sbjct: 87  ELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGHGEEMAGARQRPGLLCDIFESFIG 146

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182
           ALYLD G      FV +    + L  G F    DAKT LQE+      V  EY +   SG
Sbjct: 147 ALYLDQGRPAVEKFVRRVIFPK-LDLGWFDHAVDAKTSLQEFLQRDGDVDIEYHLLQESG 205

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            ++DP F V V   G    +G   SK+ AE  AA++ L + 
Sbjct: 206 TENDPEFKVNVSADGKVIGEGTGSSKKHAEMKAASQALNKL 246


>gi|69246105|ref|ZP_00603811.1| Ribonuclease III [Enterococcus faecium DO]
 gi|257878770|ref|ZP_05658423.1| ribonuclease III [Enterococcus faecium 1,230,933]
 gi|257881410|ref|ZP_05661063.1| ribonuclease III [Enterococcus faecium 1,231,502]
 gi|257885678|ref|ZP_05665331.1| ribonuclease III [Enterococcus faecium 1,231,501]
 gi|257887975|ref|ZP_05667628.1| ribonuclease III [Enterococcus faecium 1,141,733]
 gi|257890628|ref|ZP_05670281.1| ribonuclease III [Enterococcus faecium 1,231,410]
 gi|257893222|ref|ZP_05672875.1| ribonuclease III [Enterococcus faecium 1,231,408]
 gi|257896407|ref|ZP_05676060.1| ribonuclease III [Enterococcus faecium Com12]
 gi|257899381|ref|ZP_05679034.1| ribonuclease III [Enterococcus faecium Com15]
 gi|260558338|ref|ZP_05830534.1| ribonuclease III [Enterococcus faecium C68]
 gi|261207043|ref|ZP_05921732.1| ribonuclease III [Enterococcus faecium TC 6]
 gi|289565324|ref|ZP_06445774.1| ribonuclease III [Enterococcus faecium D344SRF]
 gi|293379492|ref|ZP_06625636.1| ribonuclease III [Enterococcus faecium PC4.1]
 gi|293556818|ref|ZP_06675379.1| ribonuclease III [Enterococcus faecium E1039]
 gi|293562991|ref|ZP_06677458.1| ribonuclease III [Enterococcus faecium E1162]
 gi|293567880|ref|ZP_06679221.1| ribonuclease III [Enterococcus faecium E1071]
 gi|293570730|ref|ZP_06681780.1| ribonuclease III [Enterococcus faecium E980]
 gi|294614479|ref|ZP_06694394.1| ribonuclease III [Enterococcus faecium E1636]
 gi|294618515|ref|ZP_06698077.1| ribonuclease III [Enterococcus faecium E1679]
 gi|294621998|ref|ZP_06701142.1| ribonuclease III [Enterococcus faecium U0317]
 gi|68195400|gb|EAN09847.1| Ribonuclease III [Enterococcus faecium DO]
 gi|257812998|gb|EEV41756.1| ribonuclease III [Enterococcus faecium 1,230,933]
 gi|257817068|gb|EEV44396.1| ribonuclease III [Enterococcus faecium 1,231,502]
 gi|257821534|gb|EEV48664.1| ribonuclease III [Enterococcus faecium 1,231,501]
 gi|257824029|gb|EEV50961.1| ribonuclease III [Enterococcus faecium 1,141,733]
 gi|257826988|gb|EEV53614.1| ribonuclease III [Enterococcus faecium 1,231,410]
 gi|257829601|gb|EEV56208.1| ribonuclease III [Enterococcus faecium 1,231,408]
 gi|257832972|gb|EEV59393.1| ribonuclease III [Enterococcus faecium Com12]
 gi|257837293|gb|EEV62367.1| ribonuclease III [Enterococcus faecium Com15]
 gi|260075512|gb|EEW63818.1| ribonuclease III [Enterococcus faecium C68]
 gi|260078671|gb|EEW66373.1| ribonuclease III [Enterococcus faecium TC 6]
 gi|289162814|gb|EFD10664.1| ribonuclease III [Enterococcus faecium D344SRF]
 gi|291589465|gb|EFF21272.1| ribonuclease III [Enterococcus faecium E1071]
 gi|291592656|gb|EFF24250.1| ribonuclease III [Enterococcus faecium E1636]
 gi|291595215|gb|EFF26546.1| ribonuclease III [Enterococcus faecium E1679]
 gi|291598425|gb|EFF29498.1| ribonuclease III [Enterococcus faecium U0317]
 gi|291600902|gb|EFF31193.1| ribonuclease III [Enterococcus faecium E1039]
 gi|291605117|gb|EFF34584.1| ribonuclease III [Enterococcus faecium E1162]
 gi|291609202|gb|EFF38474.1| ribonuclease III [Enterococcus faecium E980]
 gi|292642015|gb|EFF60181.1| ribonuclease III [Enterococcus faecium PC4.1]
          Length = 228

 Score =  244 bits (623), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 58/214 (27%), Positives = 98/214 (45%), Gaps = 5/214 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M       L++     F + +LLE+A THSS  + ++       ERLEFLGD +L L++S
Sbjct: 1   MDNQLTKELKENYNIVFHDLNLLEQAFTHSSYVNEHRNLQLSDNERLEFLGDAVLELMVS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  +    EG+L+    ++V  ++ S+ A+E     ++ +             ++  
Sbjct: 61  QYLFRLYPHLPEGKLTKTRAAIVREDSLSKFAKECHFDQYVLLGKGEENSGGRTRPALLC 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + ALYLD G +    F++K    +          D KT+LQE       V+ EY
Sbjct: 121 DLFEAFLGALYLDQGFDTTHAFIEKVIFPKVKAGAFSHEMDHKTKLQEVLQKSGDVSIEY 180

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           ++    GP H+  F + V +       G   SK+
Sbjct: 181 RLINEEGPAHERVFWIEVYVDDQLIGTGQGKSKK 214


>gi|116333590|ref|YP_795117.1| dsRNA-specific ribonuclease [Lactobacillus brevis ATCC 367]
 gi|116098937|gb|ABJ64086.1| dsRNA-specific ribonuclease [Lactobacillus brevis ATCC 367]
          Length = 229

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 113/229 (49%), Gaps = 7/229 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M A     L+ R    F ++SLL++A T +S  + +     + YER+EFLGD ++ L++S
Sbjct: 1   MIAGLNQELKDRFDIHFKDQSLLDEAFTQASYVNEHPHQGLKFYERIEFLGDAVMQLVVS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             +F  + +  +G L+    ++V+ ++ +  ARE     +IR+     K       S+  
Sbjct: 61  NYIFRRYPAMPQGRLTRLRAAMVNEQSFASFARECHFDQYIRLGRGEEKAQARQRDSLLC 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPE 174
           D+ ES I ALY+D G++    FV      + L  G+F    D KTELQE       V  +
Sbjct: 121 DIFESFIGALYMDQGLDKVVEFVTTVVFPK-LDEGRFDEFFDHKTELQELVQKNGPVDID 179

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           Y++    GPD+D  F V V +      +G   SK+ AEQ AA   L+  
Sbjct: 180 YRLLDEEGPDNDRAFKVAVYVDDKLLGEGHGHSKKHAEQNAARHALENL 228


>gi|296130133|ref|YP_003637383.1| ribonuclease III [Cellulomonas flavigena DSM 20109]
 gi|296021948|gb|ADG75184.1| ribonuclease III [Cellulomonas flavigena DSM 20109]
          Length = 240

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 77/223 (34%), Positives = 108/223 (48%), Gaps = 7/223 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58
           MS    S LEK +G    +  LL  ALTH S +H      + ERLEFLGD +LGL+++  
Sbjct: 1   MSTAAQSLLEK-LGVHL-DPELLVLALTHRSFAHEAGGIPTNERLEFLGDTVLGLVVTEH 58

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L+       EG+L+    + VS    +QVAR LDL S++ +             SI +D 
Sbjct: 59  LYRTHPGNSEGDLAKMRAATVSQRALAQVARSLDLGSYVLLGKGELATGGRDKDSILSDT 118

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYK 176
           +E+L  A+YL  G+E A   VD+  +     +       D KT LQE + +     P Y+
Sbjct: 119 LEALFGAVYLSHGLEPARVLVDRLVRPTLTAAADLGAGLDWKTSLQELSASLGLGAPYYE 178

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           VT   GPDH   FT    + G     G   +K+ AEQ AA+  
Sbjct: 179 VTGE-GPDHARTFTASAVVGGEVRGTGTGPAKKIAEQEAASAA 220


>gi|318056548|ref|ZP_07975271.1| ribonuclease III [Streptomyces sp. SA3_actG]
 gi|318076722|ref|ZP_07984054.1| ribonuclease III [Streptomyces sp. SA3_actF]
          Length = 275

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 78/220 (35%), Positives = 119/220 (54%), Gaps = 6/220 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           +A  ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L
Sbjct: 19  AASSHTLLEGRLGYHLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 77

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +       EG+L+    ++V++   ++V+R LDL +FIR+             SI AD +
Sbjct: 78  YRTHPDLPEGQLAKLRAAVVNSRALAEVSRGLDLGAFIRLGRGEEGTGGRDKASILADTL 137

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD G++ A   V + +     KS +     D KT LQE    +    PEY V
Sbjct: 138 EAVIGAVYLDQGLDKAAELVHRLFDPLIEKSAELGAGLDWKTSLQELTAMEGLGVPEYLV 197

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           T   GPDH+  FT    + G++   G   SK+ AEQ AA 
Sbjct: 198 T-EEGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 236


>gi|317177479|dbj|BAJ55268.1| ribonuclease III [Helicobacter pylori F16]
          Length = 239

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 79/221 (35%), Positives = 114/221 (51%), Gaps = 4/221 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++ F 
Sbjct: 17  SYITLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFY 74

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+LS    S+VSA   +++A+ + L  ++RVSS           SI +   E+L+A
Sbjct: 75  QYDEGKLSKLRASIVSAHGFTKLAKVIALQDYLRVSSSEEISKGREKPSILSSAFEALMA 134

Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
            +YL+ G+            +    L       D KT LQE   A+F V P Y++    G
Sbjct: 135 GVYLEAGLAKVRKITQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKEKG 194

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           PDH   F + + I     A     SK+ AEQ  A + L++ 
Sbjct: 195 PDHHKEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKL 235


>gi|282861354|ref|ZP_06270419.1| ribonuclease III [Streptomyces sp. ACTE]
 gi|282564012|gb|EFB69549.1| ribonuclease III [Streptomyces sp. ACTE]
          Length = 274

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 120/224 (53%), Gaps = 6/224 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           +A  ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L
Sbjct: 16  TASSHTLLEGRLGYHLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 74

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +       EG+L+    ++V++   ++V R LDL SFIR+             SI AD +
Sbjct: 75  YRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLDLGSFIRLGRGEEGTGGRDKASILADTL 134

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD G++ A   V + +     +S       D KT LQE   ++    PEY V
Sbjct: 135 EAVIGAVYLDQGLDAASELVHRLFDPLIDRSSNLGAGLDWKTSLQELTASESLGVPEYLV 194

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           T  +GPDH+  FT    + G++   G   SK+ AEQ AA    +
Sbjct: 195 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWR 237


>gi|21230730|ref|NP_636647.1| ribonuclease III [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66769274|ref|YP_244036.1| ribonuclease III [Xanthomonas campestris pv. campestris str. 8004]
 gi|188992425|ref|YP_001904435.1| ribonuclease III [Xanthomonas campestris pv. campestris str. B100]
 gi|24212269|sp|Q8PB52|RNC_XANCP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|81304767|sp|Q4USF7|RNC_XANC8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|21112323|gb|AAM40571.1| ribonuclease III [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66574606|gb|AAY50016.1| ribonuclease III [Xanthomonas campestris pv. campestris str. 8004]
 gi|167734185|emb|CAP52393.1| Ribonuclease III [Xanthomonas campestris pv. campestris]
          Length = 226

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 79/214 (36%), Positives = 111/214 (51%), Gaps = 6/214 (2%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           IG+AFA+  LL +AL H S    +    ERLEFLGD I+ LLI+  L+  +  A EG L+
Sbjct: 12  IGHAFADPGLLAQALRHRSAGTPH---NERLEFLGDGIVNLLIAEALYQRWPKADEGALT 68

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                LV     + + R L+L   + +     K       SI AD VE+++AA+YLD G 
Sbjct: 69  RARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDCGF 128

Query: 133 EVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           E     V  +++    AL  GK  +D KT LQEW  A+    P+Y +   SG +H  +F 
Sbjct: 129 ERCRAVVLPWFEPSLAALPVGKAEKDPKTRLQEWLQARQLPLPQYALISESGDEHAKQFH 188

Query: 191 VVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V   +    A A+G   S+R AEQ AAA V+ + 
Sbjct: 189 VACILEQPAARAEGQGTSRRLAEQQAAATVIAQL 222


>gi|294626963|ref|ZP_06705554.1| ribonuclease III [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|294664535|ref|ZP_06729880.1| ribonuclease III [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292598823|gb|EFF42969.1| ribonuclease III [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292605697|gb|EFF49003.1| ribonuclease III [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 226

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 78/214 (36%), Positives = 111/214 (51%), Gaps = 6/214 (2%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           IG+AFA+ +LL +AL H S    +    ERLEFLGD I+ LLI+  L+  +  A EG L+
Sbjct: 12  IGHAFADPALLAQALRHRSAGTPH---NERLEFLGDGIVNLLIAEALYQRWPKADEGALT 68

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                LV     + + R L+L   + +     K       SI AD VE+++AA+YLD G 
Sbjct: 69  RARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDCGF 128

Query: 133 EVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           E     V  +++    AL  GK  +D KT LQEW  A+    P Y +   SG +H  +F 
Sbjct: 129 ERCRAVVLPWFEASLAALPVGKAEKDPKTRLQEWLQARQLPLPTYVLISESGDEHAKQFH 188

Query: 191 VVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V   +   +A A+G   S+R AEQ AA  V+ + 
Sbjct: 189 VACILEQPVARAEGQGTSRRLAEQQAATLVIAQL 222


>gi|168333987|ref|ZP_02692211.1| Ribonuclease III [Epulopiscium sp. 'N.t. morphotype B']
          Length = 239

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 72/221 (32%), Positives = 112/221 (50%), Gaps = 6/221 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
             + EK+I Y F    LL+ ALTHSS ++ ++E      ERLEFLGD IL L++S  LF 
Sbjct: 11  LESFEKKIEYTFKRIELLDLALTHSSYANEHREQGVKDNERLEFLGDAILDLIVSEYLFK 70

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +  ++EG+LS    S+V   + ++  + L+L  +I +             SI AD  E+
Sbjct: 71  KYPESQEGDLSKFRASIVCEASLAKAGKRLELGKYILLGHGEEMGGGRDRESIIADAFEA 130

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           +  A+ +D   E   T++ K   +  +   + K  +D KT LQ  +         Y+V  
Sbjct: 131 VTGAMLIDSSYEDVKTYLAKTLIEFIKHTSATKLYKDYKTILQIESQKNVNTVIAYEVVE 190

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             GPDH+  F V ++ +G    +G   +KR AEQVAA + L
Sbjct: 191 EKGPDHEKEFVVELKQNGKVIGKGSGRTKRDAEQVAAHQAL 231


>gi|317009322|gb|ADU79902.1| ribonuclease III [Helicobacter pylori India7]
          Length = 239

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 76/217 (35%), Positives = 112/217 (51%), Gaps = 4/217 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++ F    E
Sbjct: 21  LEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQYDE 78

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS    S+VS    +++A+ + L  ++RVSS           SI +   E+L+A +YL
Sbjct: 79  GKLSKLRASIVSVHGFTKLAKAIALQDYLRVSSSEEVSNGREKPSILSSAFEALMAGVYL 138

Query: 129 DGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           + G+      +     +    L       D KT LQE   A+F V P Y++    GPDH 
Sbjct: 139 EAGLAKVHKIMQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLKEKGPDHH 198

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F + + I     A     SK+ AEQ  A + L++ 
Sbjct: 199 KEFEMALYIQDKIYATAKGKSKKEAEQQCAYQALQKL 235


>gi|88812349|ref|ZP_01127599.1| ribonuclease III [Nitrococcus mobilis Nb-231]
 gi|88790356|gb|EAR21473.1| ribonuclease III [Nitrococcus mobilis Nb-231]
          Length = 226

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 76/224 (33%), Positives = 118/224 (52%), Gaps = 6/224 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + Y  L++R+GY F+  +LL +ALTH S    +  + ERLEFLGD +L  +++  +F+ 
Sbjct: 2   TVEYDRLQERLGYRFSESTLLVRALTHRSA---FGPNNERLEFLGDSVLNFVVAAEVFDR 58

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
              A+EGELS     LV+  + + +AREL L   +R+     K       SI +D +E++
Sbjct: 59  RKQAREGELSRLRAKLVNQASLADIARELALGEALRLGGGEMKAGGQRRDSILSDTLEAI 118

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFR 180
           + A+YLD G  +    + + +  R  +    R  +D KT LQE   +     PEY+V   
Sbjct: 119 VGAVYLDAGFAICREVIRRLYGNRLRELPSIRELKDPKTRLQEHLQSIRLPLPEYRVLEI 178

Query: 181 SGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLKRE 223
           +G  H   F V   I G+     G+  S+R AEQ AAA +L+R 
Sbjct: 179 AGRAHAQTFQVECRIIGVETVTHGLANSRRQAEQKAAASMLQRL 222


>gi|320008314|gb|ADW03164.1| ribonuclease III [Streptomyces flavogriseus ATCC 33331]
          Length = 274

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 77/224 (34%), Positives = 119/224 (53%), Gaps = 6/224 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           +A  ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L
Sbjct: 16  TASSHTLLEGRLGYHLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 74

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +       EG+L+    ++V++   ++V R L+L SFIR+             SI AD +
Sbjct: 75  YRTHPDLPEGQLAKLRAAVVNSRALAEVGRGLELGSFIRLGRGEEGTGGRDKASILADTL 134

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD G+  A   V + +     +S       D KT LQE   ++    PEY V
Sbjct: 135 EAVIGAVYLDQGLGAASELVHRLFDPLIDRSSNLGAGLDWKTSLQELTASESLGVPEYLV 194

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           T  +GPDH+  FT    + G++   G   SK+ AEQ AA    +
Sbjct: 195 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWR 237


>gi|15895025|ref|NP_348374.1| ribonuclease III [Clostridium acetobutylicum ATCC 824]
 gi|22654069|sp|Q97IA4|RNC_CLOAB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|15024717|gb|AAK79714.1|AE007684_2 DsRNA-specific ribonuclease III [Clostridium acetobutylicum ATCC
           824]
          Length = 230

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 72/214 (33%), Positives = 106/214 (49%), Gaps = 4/214 (1%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           ++G  F N +LL  ALTHSS ++  +  E  ERLEFLGD +L L IS   F  + +  EG
Sbjct: 13  KLGIEFQNINLLVTALTHSSYANENKNAEYNERLEFLGDAVLQLSISEYFFKKYPTISEG 72

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           EL+ +   +V   +   +     L  +IR+S            SI AD VE++IAA+YLD
Sbjct: 73  ELTKKRALVVCGMSLHSIGERWQLGKYIRMSHGEELTGGRTRVSIIADCVEAVIAAIYLD 132

Query: 130 GGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
            G + A  F+ + ++     +   K   D KT LQE   +K     +Y +    GP H  
Sbjct: 133 KGFDTAKNFILREFEGTIQNAVENKIILDYKTRLQEILQSKGKTDIKYTLVRHEGPPHRR 192

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +F V +       + G   +K+ AEQ AA + LK
Sbjct: 193 KFFVNLNFDNDVKSTGEGYTKKDAEQDAACKALK 226


>gi|330828482|ref|YP_004391434.1| ribonuclease III [Aeromonas veronii B565]
 gi|328803618|gb|AEB48817.1| Ribonuclease III [Aeromonas veronii B565]
          Length = 223

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 78/213 (36%), Positives = 114/213 (53%), Gaps = 7/213 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ ++ + L+ R+G+ FA+  LL +ALTH S    +    ERLEFLGD IL L+I+  LF
Sbjct: 1   MN-IKMNRLQSRLGHVFADLELLTRALTHRSAGSRH---NERLEFLGDSILSLVIADDLF 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F  A EG+LS    +LV  +T +++ RE DL   + +     K       SI AD VE
Sbjct: 57  HRFPQAAEGDLSRMRATLVREKTLAELGREFDLGDHLILGPGELKSGGFRRESILADTVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD  +E   T +  ++  R   +K G  ++D KT LQE         P Y VT
Sbjct: 117 AVIGAVYLDTNLETVRTLLLSWYASRLEEIKPGIEQKDPKTRLQEILQGSRKSLPTYTVT 176

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  H+  FTV  ++ GL  P  G+  S+R 
Sbjct: 177 NVKGEAHNQEFTVQCDVEGLDGPLVGVGTSRRK 209


>gi|189485602|ref|YP_001956543.1| ribonuclease III [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
 gi|170287561|dbj|BAG14082.1| ribonuclease III [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
          Length = 243

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 109/224 (48%), Gaps = 5/224 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTL 58
           M    +   +K I Y F +  +L  ALTH S +     +    R+EFLGD IL  +++  
Sbjct: 1   MLNKNWEKFQKIIEYKFGDPKILATALTHKSYAAETVGENYNRRMEFLGDSILSAIVAET 60

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L+  +    EG+LS     ++SA   S  ARE+DL   I +             S+  DV
Sbjct: 61  LYLRYPRESEGKLSQFKAQIISAHNLSSWAREMDLGGCIYLGKSEDTKEARQRESLLCDV 120

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
            E++I A+YLDGG E A  FV ++   +         D K+ LQE   + +   PEYKV 
Sbjct: 121 FEAVIGAIYLDGGFENAKKFVLRFLNDQKEIE---ITDYKSRLQEILQSIYKELPEYKVI 177

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             SGPDH+ +F V V I      +G   SK+ A+Q AA + +K 
Sbjct: 178 KESGPDHNKKFEVAVYIKSELLGKGAGNSKKEAQQFAAKQAMKN 221


>gi|312194940|ref|YP_004015001.1| ribonuclease III [Frankia sp. EuI1c]
 gi|311226276|gb|ADP79131.1| ribonuclease III [Frankia sp. EuI1c]
          Length = 319

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 104/207 (50%), Gaps = 8/207 (3%)

Query: 20  RSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
             LL++ALTH S ++      + ERLEFLGD +L L+++  L+N      EG L+ +  S
Sbjct: 43  PDLLDRALTHRSYAYENGGLPTNERLEFLGDAVLQLVVTDALYNRHPDLPEGALAKQRAS 102

Query: 78  LVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
           +V++   + VAR +    +  ++ +             SI AD +E+LI A+YL+ G+EV
Sbjct: 103 VVNSRALADVARVIGPKGIGPYLLLGKGEETTGGRDKASILADTLEALIGAVYLELGLEV 162

Query: 135 AGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
           A   V +Y+     ++       D KT LQE         P+Y VT  SGPDH  RFT  
Sbjct: 163 AAQLVHRYFDPLLDEAAGRGAGLDWKTSLQERTAELGMGPPDYVVTD-SGPDHAKRFTAR 221

Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEV 219
             IS     +G   SK+ AEQ AA   
Sbjct: 222 ARISDRIYGEGEGGSKKEAEQRAAERA 248


>gi|325509162|gb|ADZ20798.1| ribonuclease III [Clostridium acetobutylicum EA 2018]
          Length = 230

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 72/214 (33%), Positives = 106/214 (49%), Gaps = 4/214 (1%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           ++G  F N +LL  ALTHSS ++  +  E  ERLEFLGD +L L IS   F  + +  EG
Sbjct: 13  KLGIEFQNINLLVTALTHSSYANENKNAEYNERLEFLGDAVLQLSISEYFFKKYPTISEG 72

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           EL+ +   +V   +   +     L  +IR+S            SI AD VE++IAA+YLD
Sbjct: 73  ELTKKRALVVCGISLHSIGERWQLGKYIRMSHGEELTGGRTRVSIIADCVEAVIAAIYLD 132

Query: 130 GGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
            G + A  F+ + ++     +   K   D KT LQE   +K     +Y +    GP H  
Sbjct: 133 KGFDTAKNFILREFEGTIQNAVENKIILDYKTRLQEILQSKGKTDIKYTLVRHEGPPHRR 192

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +F V +       + G   +K+ AEQ AA + LK
Sbjct: 193 KFFVNLNFDNDVKSTGEGYTKKDAEQDAACKALK 226


>gi|169335334|ref|ZP_02862527.1| hypothetical protein ANASTE_01746 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258072|gb|EDS72038.1| hypothetical protein ANASTE_01746 [Anaerofustis stercorihominis DSM
           17244]
          Length = 227

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 112/224 (50%), Gaps = 4/224 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61
           +    LE+++GY F ++ L++ ALTHSS S+  +  ++ ERLEFLGD +L L +   L+ 
Sbjct: 1   MEIERLEQKLGYEFKDKELIKVALTHSSKSNENKTLQNNERLEFLGDAVLDLCVGAYLYK 60

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
                KEG L+     +V A++    + +LDL  FI +          +  +I AD  E+
Sbjct: 61  TLPGKKEGVLTKLRALIVCADSLFSASDKLDLGEFIMLGKGEMHSGGKYKKNIIADCFEA 120

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           ++ A+YLD   E   T           K+  G    D KT LQE+ H+K      Y++  
Sbjct: 121 VLGAIYLDSDYEKVSTIALTLLSDVIKKAISGNLTYDYKTLLQEYIHSKNIKDFSYELVQ 180

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             GP+HD  FT  V I+     QG   +K+ +EQ AA   LK+ 
Sbjct: 181 IKGPEHDQIFTSKVIINNKDMGQGEGKNKKESEQHAALNTLKKL 224


>gi|153853253|ref|ZP_01994662.1| hypothetical protein DORLON_00647 [Dorea longicatena DSM 13814]
 gi|149754039|gb|EDM63970.1| hypothetical protein DORLON_00647 [Dorea longicatena DSM 13814]
          Length = 235

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 79/227 (34%), Positives = 114/227 (50%), Gaps = 6/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           MS      LE +IGY F + +L  KA+ HSS ++       E  ERLEFLGD +L L+ S
Sbjct: 5   MSK-DLKELEGKIGYKFDDFTLFTKAMIHSSYANEKHLPKYECNERLEFLGDAVLELVSS 63

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF++     EGEL+    S+V     +  AR+LDL  ++ +             S+ +
Sbjct: 64  EFLFHNNPKLPEGELTKTRASMVCEPALAFCARDLDLGEYLLLGKGEDATGGRKRESVTS 123

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D +E+LI A+YLDGG   A  F+ ++  +  L++ K   D+KT LQE   A F     Y 
Sbjct: 124 DAMEALIGAIYLDGGFANAKEFIHRFILK-DLENKKLFFDSKTILQEIVQANFKEVISYH 182

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +    GPDH+  F V V I       G   +K+AAEQ AA   + + 
Sbjct: 183 LIGEEGPDHNKIFRVAVHIGEEEYGVGEGRTKKAAEQEAAYISILKL 229


>gi|315502406|ref|YP_004081293.1| ribonuclease iii [Micromonospora sp. L5]
 gi|315409025|gb|ADU07142.1| ribonuclease III [Micromonospora sp. L5]
          Length = 267

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 72/221 (32%), Positives = 110/221 (49%), Gaps = 9/221 (4%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDS 65
            LE   G +  +  LLE+ALTH S ++      + ERLEFLGD +LG++I+T LF++   
Sbjct: 13  HLEAAFGVSL-DPELLERALTHRSYAYENGGLPTNERLEFLGDSVLGVVITTALFHNHPD 71

Query: 66  AKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
             EG+L+    S+V+    + VAR L    L +++ +             SI AD +E+L
Sbjct: 72  LPEGQLAKLRASVVNMRALADVARGLGPDGLGAYLLLGKGEEATGGRDKASILADTLEAL 131

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           + A+YL  G++ A   + + +     +S       D KT LQE   A     PEY++   
Sbjct: 132 LGAIYLQYGLDTAAIVIHRLFDPLMAESAGRGAALDWKTSLQELTAALGLGVPEYRIEG- 190

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +GPDH   FT  V ++G         SK+ AEQ AA    +
Sbjct: 191 TGPDHLKTFTAWVVVAGNRYGGAEGRSKKEAEQRAAESAWR 231


>gi|302865861|ref|YP_003834498.1| ribonuclease III [Micromonospora aurantiaca ATCC 27029]
 gi|302568720|gb|ADL44922.1| ribonuclease III [Micromonospora aurantiaca ATCC 27029]
          Length = 267

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 72/221 (32%), Positives = 110/221 (49%), Gaps = 9/221 (4%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDS 65
            LE   G +  +  LLE+ALTH S ++      + ERLEFLGD +LG++I+T LF++   
Sbjct: 13  HLEAAFGVSL-DPELLERALTHRSYAYENGGLPTNERLEFLGDSVLGVVITTALFHNHPD 71

Query: 66  AKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
             EG+L+    S+V+    + VAR L    L +++ +             SI AD +E+L
Sbjct: 72  LPEGQLAKLRASVVNMRALADVARGLGPDGLGAYLLLGKGEEATGGRDKASILADTLEAL 131

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           + A+YL  G++ A   + + +     +S       D KT LQE   A     PEY++   
Sbjct: 132 LGAIYLQYGLDTAAIVIHRLFDPLMAESAGRGAALDWKTSLQELTAALGLGVPEYRIEG- 190

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +GPDH   FT  V ++G         SK+ AEQ AA    +
Sbjct: 191 TGPDHLKTFTAWVVVAGNRYGGAEGRSKKEAEQRAAESAWR 231


>gi|330877435|gb|EGH11584.1| ribonuclease III [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 229

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 78/214 (36%), Positives = 111/214 (51%), Gaps = 6/214 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           ++  S LE+++ Y F ++ L+  ALTH S +     + ERLEFLGD IL  +    LF  
Sbjct: 2   SVSLSRLERQLDYTFKDQELMILALTHRSFA---GRNNERLEFLGDAILNFVAGEALFER 58

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F  A+EG+LS     LV  ET + +AR  DL  ++R+ S   K       SI AD +E+L
Sbjct: 59  FPQAREGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADALEAL 118

Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           I A+YLD G+E A   V  +      +L      +D KT LQE+  ++    P Y+V   
Sbjct: 119 IGAIYLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACDLPRYEVVDI 178

Query: 181 SGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213
            G  H   F V  EI+ L   ++G   S+R AEQ
Sbjct: 179 QGEPHCRTFFVECEINLLNEKSRGQGVSRRIAEQ 212


>gi|317010882|gb|ADU84629.1| ribonuclease III [Helicobacter pylori SouthAfrica7]
          Length = 234

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 78/220 (35%), Positives = 116/220 (52%), Gaps = 4/220 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++ F  
Sbjct: 13  YITLEKALGYSFKDKHLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 70

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA+  +++A+ + L  ++RVSS           SI +   E+L+A 
Sbjct: 71  YDEGKLSKLRASIVSAQGFTKLAKVISLQDYLRVSSSEETSKGREKPSILSSAFEALMAG 130

Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YL+ G++     +     +    L       D KT LQE   A+F V P Y++    GP
Sbjct: 131 VYLEAGLDKVRKIMQNLLNRAYKRLDLEHLSVDYKTALQELTQAQFCVIPTYQLLKEKGP 190

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            H   F + + I     A     SK+ AEQ  A + L++ 
Sbjct: 191 AHHKEFEMALYIQNQMYATAKGKSKKEAEQQCAYQALQKL 230


>gi|146306507|ref|YP_001186972.1| ribonuclease III [Pseudomonas mendocina ymp]
 gi|189043331|sp|A4XSC4|RNC_PSEMY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|145574708|gb|ABP84240.1| RNAse III [Pseudomonas mendocina ymp]
          Length = 229

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 75/218 (34%), Positives = 109/218 (50%), Gaps = 11/218 (5%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           MS    S LE+++G++F ++ L+  ALTH S +     + ERLEFLGD IL  +    LF
Sbjct: 1   MSP-NLSRLERKLGHSFKDQDLMILALTHRSFA---GRNNERLEFLGDAILNFVAGEALF 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A+EG+LS     LV  ET + +AR  +L  ++R+ S   K       SI AD +E
Sbjct: 57  ERFPQAREGQLSRLRARLVKGETLAVLARGFELGEYLRLGSGELKSGGFRRESILADALE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI A+YLD G++ A   V  +       L      +D KT LQE+  ++    P Y+V 
Sbjct: 117 ALIGAIYLDAGMDAARERVLDWLSGELDGLTLIDTNKDPKTRLQEFLQSRACELPRYEVV 176

Query: 179 FRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQ 213
              G  H   F V  ++   +      G   S+R AEQ
Sbjct: 177 DIQGEPHCRTFMVECQVALLNEKTL--GQGGSRRIAEQ 212


>gi|224542836|ref|ZP_03683375.1| hypothetical protein CATMIT_02028 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524248|gb|EEF93353.1| hypothetical protein CATMIT_02028 [Catenibacterium mitsuokai DSM
           15897]
          Length = 230

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 67/225 (29%), Positives = 107/225 (47%), Gaps = 5/225 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLF 60
           ++     ++    F    L ++A THSS ++    +   YERLEF+GD +L L +S  +F
Sbjct: 1   MKILDFLQKENIPFKRIGLYKEAFTHSSYANESNAHIPDYERLEFMGDAVLQLFVSEFIF 60

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                 KEG+L+   + LV  E+ ++ + EL L   + +     K       S+ A++ E
Sbjct: 61  ALHPEYKEGQLTQLRSKLVREESLARFSEELHLGELLYLGVGEEKSGGRHRESVLANIYE 120

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVT 178
           S I ALYLD G E     ++K   +   +  +F    D KT+LQE   +    T  Y V 
Sbjct: 121 SFIGALYLDCGKEQVIRILEKTIFKHVNEVNEFDDITDYKTKLQELVQSDDRKTVSYHVK 180

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +GP + P F + V +  +    G   SK+ AEQ AA + L + 
Sbjct: 181 SSTGPANAPEFVIEVILDDMILGTGKGTSKKRAEQHAAKDALMKM 225


>gi|145588593|ref|YP_001155190.1| ribonuclease III [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145046999|gb|ABP33626.1| RNAse III [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 263

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 116/226 (51%), Gaps = 9/226 (3%)

Query: 1   MSA---LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIST 57
           M+A   +  +TL++R+GY F    LL +ALTH S     +++ ERLEFLGD IL  +++ 
Sbjct: 1   MNARAVIETATLQERLGYVFKKTELLNQALTHRS---HSKKNNERLEFLGDSILNCVVAD 57

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
           LL+  +    EG+LS    +LV  +   ++A+ L L+  +R+     K       SI AD
Sbjct: 58  LLYERYSDLDEGDLSRVRANLVKQQALYEIAQTLLLSDHLRLGEGELKSGGFRRPSILAD 117

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
            +E++  A++LDGG + A   + K +      +      +D KT LQE         P Y
Sbjct: 118 TLEAVTGAIFLDGGFDAAKDCLRKLYSVILAQVDPKTLGKDDKTLLQECLQGYQLPLPTY 177

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVL 220
            VT  +G  H+ +F V   I  L  + +G   S+RAAEQ AA   L
Sbjct: 178 NVTGTTGAAHNQQFEVECLIPSLKVSVKGDGASRRAAEQSAAKIAL 223


>gi|319779260|ref|YP_004130173.1| Ribonuclease III [Taylorella equigenitalis MCE9]
 gi|317109284|gb|ADU92030.1| Ribonuclease III [Taylorella equigenitalis MCE9]
          Length = 251

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 117/221 (52%), Gaps = 6/221 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++   L+K++ Y+F +  LL +ALTH S S ++    ERLEFLGD IL   +++LLF   
Sbjct: 1   MKLDELQKKLNYSFKDIKLLNRALTHRSFSSTH---NERLEFLGDSILNFSVASLLFKKL 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+L+    S V+ +T +++A  L L   I++     K       SI AD VE++ 
Sbjct: 58  KDQAEGDLTRIRASYVNQDTLAKIANNLKLQDLIKLGEGELKSGGFKRPSILADAVEAIF 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+Y+D  IE A   V+  ++   + +      RD+KT LQE+  AK    P YKV   +
Sbjct: 118 GAIYIDSNIEQAQKVVESIYEPLMKNVDFSTVGRDSKTLLQEFVQAKRVPLPSYKVLNIT 177

Query: 182 GPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLK 221
           G  HD  F V   +      AQ +  S+R+AEQ AA  VL+
Sbjct: 178 GAAHDQEFEVECTVELFDVSAQAVGASRRSAEQAAATLVLE 218


>gi|209884975|ref|YP_002288832.1| ribonuclease III [Oligotropha carboxidovorans OM5]
 gi|209873171|gb|ACI92967.1| ribonuclease III [Oligotropha carboxidovorans OM5]
          Length = 288

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 87/204 (42%), Positives = 120/204 (58%), Gaps = 3/204 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNH 62
              +E+RIG+ F N +LL+ ALTH S    S +  +SY+RLEFLGD +LGL++S +L+  
Sbjct: 60  LREIEQRIGHTFKNPNLLKTALTHVSALKPSQNRTDSYQRLEFLGDHVLGLIVSDMLYGA 119

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F  A EGE+S R   LV  E C  VA+ L L   I++ +           SI  D+ E++
Sbjct: 120 FPKADEGEMSKRLADLVRKEACVDVAKSLGLHENIKLGTVGAGVGARLRNSIVGDICEAV 179

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           I A++LDGG + A  FV   W +R  +  +  RD KT LQEWA  K   TP Y+   R+G
Sbjct: 180 IGAIFLDGGYDAAEQFVLSNWTERMRRPVRPLRDPKTILQEWAQGKGLPTPVYREVERTG 239

Query: 183 PDHDPRFTVVVEISGLAPAQGMDC 206
           P HDPRF V V++ GLA A+G+  
Sbjct: 240 PHHDPRFRVAVDLPGLASAEGIGS 263


>gi|33519987|ref|NP_878819.1| ribonuclease III [Candidatus Blochmannia floridanus]
 gi|81666891|sp|Q7VRR0|RNC_BLOFL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|33504333|emb|CAD83226.1| ribonuclease III [Candidatus Blochmannia floridanus]
          Length = 232

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 71/221 (32%), Positives = 116/221 (52%), Gaps = 6/221 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  + L+K++GY F    LL +ALTH S S+ +    ERLEFLGD IL   I+ +L++ +
Sbjct: 7   IEINLLQKKLGYFFHTVDLLLRALTHRSFSNKH---NERLEFLGDSILNYSITNILYHRY 63

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
           +   EG++S   +SLV + T  ++A+E  L + +++     K+      SI AD VE++I
Sbjct: 64  NHMDEGDMSRIRSSLVCSRTLVELAKEFKLGNCLKLGQGELKNKGYNRESILADTVEAII 123

Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
             ++LD  I+     +  +++ R   +     ++D KT LQE+        P Y +    
Sbjct: 124 GGIFLDSNIKTIEMLIAFWYQFRLNKIDLEDKQKDPKTRLQEYLQHHHLPLPIYCINQVQ 183

Query: 182 GPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLK 221
           G  HD  F +  ++S L  +  G   S+R AEQ AA   LK
Sbjct: 184 GQAHDQIFIMNCQVSSLKYSVMGRGSSRRKAEQDAAENALK 224


>gi|257866576|ref|ZP_05646229.1| ribonuclease III [Enterococcus casseliflavus EC30]
 gi|257872908|ref|ZP_05652561.1| ribonuclease III [Enterococcus casseliflavus EC10]
 gi|257876180|ref|ZP_05655833.1| ribonuclease III [Enterococcus casseliflavus EC20]
 gi|325567330|ref|ZP_08143997.1| ribonuclease III [Enterococcus casseliflavus ATCC 12755]
 gi|257800534|gb|EEV29562.1| ribonuclease III [Enterococcus casseliflavus EC30]
 gi|257807072|gb|EEV35894.1| ribonuclease III [Enterococcus casseliflavus EC10]
 gi|257810346|gb|EEV39166.1| ribonuclease III [Enterococcus casseliflavus EC20]
 gi|325158763|gb|EGC70909.1| ribonuclease III [Enterococcus casseliflavus ATCC 12755]
          Length = 230

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 5/218 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M+      L+++    F +  LLE+A THSS  + ++       ERLEFLGD +L L++S
Sbjct: 1   MNTQLTKELKEKFDIVFHDVDLLEQAFTHSSYVNEHRNLHLSDNERLEFLGDAVLELIVS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+       EG+L+    ++V  ++ S  A++     +IR+             S+  
Sbjct: 61  RYLYRELPDLPEGKLTKLRAAIVREDSLSMFAKDCRFDEYIRLGKGEENSGGRKRPSLLC 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + ALYLD G+E    F+ K    +          D KT LQE       V+  Y
Sbjct: 121 DLFEAFLGALYLDQGLESVSGFLTKVVFPKVKAGAFSHEMDHKTRLQEVLQRGGDVSINY 180

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
           ++   +GP H+  F   V        +G   SK+ +EQ
Sbjct: 181 RLIKEAGPAHERIFWTEVYCDDTLIGKGQGKSKKLSEQ 218


>gi|188577282|ref|YP_001914211.1| ribonuclease III [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188521734|gb|ACD59679.1| ribonuclease III [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 226

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 77/214 (35%), Positives = 110/214 (51%), Gaps = 6/214 (2%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           IG+AFA+  LL +AL H S    +    ERLEFLGD I+ LL++  L+  +  A EG L+
Sbjct: 12  IGHAFADPDLLAQALRHRSAGTPH---NERLEFLGDGIVNLLVAEALYQRWPKADEGALT 68

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                LV     + + R L+L   + +     K       SI AD VE+++AA+YLD G 
Sbjct: 69  RARAELVREGALAVIGRTLNLGERLTLGPGEWKSGGHRRDSILADAVEAIVAAIYLDCGF 128

Query: 133 EVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           E     V  +++    AL  GK  +D KT LQEW  A+    P Y +   SG +H  +F 
Sbjct: 129 ERCRAVVLPWFEASLAALPVGKAEKDPKTRLQEWLQARQLPLPNYALISESGDEHAKQFH 188

Query: 191 VVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V   +   +A A+G   S+R AEQ AA  V+ + 
Sbjct: 189 VACILEQPVARAEGQGTSRRLAEQQAATLVIAQL 222


>gi|145300361|ref|YP_001143202.1| ribonuclease III [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142853133|gb|ABO91454.1| ribonuclease III [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 223

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 76/213 (35%), Positives = 113/213 (53%), Gaps = 7/213 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ ++ + L+ R+G+ F ++ LL +ALTH S    +    ERLEFLGD IL L+I+  LF
Sbjct: 1   MN-IKMNRLQSRLGHVFHDKELLTRALTHRSAGSRH---NERLEFLGDSILSLVIADALF 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F  A EG+LS    +LV  +T +++ RE DL   + +     K       SI AD VE
Sbjct: 57  HRFPQAAEGDLSRMRATLVREKTLAELGREFDLGDDLILGPGELKSGGFRRESILADTVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD  +E     +  ++  R   +K G  ++D KT LQE         P Y VT
Sbjct: 117 AVIGAVYLDTDLEAVRVLLLSWYASRLDEIKPGIEQKDPKTRLQEILQGSRKSLPTYTVT 176

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  H+  FTV  ++ GL  P  G+  S+R 
Sbjct: 177 NVKGEAHNQEFTVQCDVEGLDGPLVGVGTSRRK 209


>gi|300854469|ref|YP_003779453.1| dsRNA-specific ribonuclease [Clostridium ljungdahlii DSM 13528]
 gi|300434584|gb|ADK14351.1| dsRNA-specific ribonuclease [Clostridium ljungdahlii DSM 13528]
          Length = 235

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 118/224 (52%), Gaps = 4/224 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
              LEK+   +F+N+ ++E ALTHSS ++  +  +  ERLEFLGD +L L IS  LF  +
Sbjct: 7   IELLEKKFNMSFSNKEIIEVALTHSSYANGRKNIKFNERLEFLGDSVLQLCISEYLFLKY 66

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            S  EGEL+ + + +V   +   VA++ +L  +I++S           TSI AD VE++I
Sbjct: 67  KSKPEGELTKKRSLIVCENSLYHVAKKWNLGKYIKMSKGEEITGGRERTSILADCVEAII 126

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+YL+ G E  G F+ + ++     +   +   D KT+LQE       V+ EY +    
Sbjct: 127 AAIYLNFGYENTGKFIIENFQDIIENAIKNRIIMDYKTKLQETLQKDGDVSIEYNLVKYE 186

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           GP H  +F   V         G+  SK+ +EQ AA + L +  +
Sbjct: 187 GPPHRRKFYTEVCTEKNVLGSGVGYSKKESEQNAAQDALMKLNV 230


>gi|109899454|ref|YP_662709.1| ribonuclease III [Pseudoalteromonas atlantica T6c]
 gi|109701735|gb|ABG41655.1| RNAse III [Pseudoalteromonas atlantica T6c]
          Length = 227

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 81/221 (36%), Positives = 115/221 (52%), Gaps = 6/221 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y  L  ++GY F +   L  ALTH S+  ++    ERLEFLGD +LGL+I+  LF  F  
Sbjct: 7   YKPLYTKLGYEFQDPKNLTVALTHRSVGANH---NERLEFLGDAVLGLVIAKALFERFPK 63

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG L+   +SLV  +T ++VARE  L   + +     K       SI AD VE++I A
Sbjct: 64  QPEGNLTRMRSSLVKGDTLAEVAREFSLGDLLLLGPGELKSGGHRRDSILADAVEAIIGA 123

Query: 126 LYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +Y + G++     +  ++ +R  AL      +D KT LQE+   +    PEY+V   SG 
Sbjct: 124 IYQEVGMQGCEPLILAWFAKRIDALNPDATPKDDKTRLQEYLQGRQLPLPEYEVIDISGK 183

Query: 184 DHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
            HD  FTV   +SGL  P  G   S+R AEQ  A + L+  
Sbjct: 184 SHDQTFTVQCTVSGLSKPIIGRGKSRRRAEQRTAKQALENL 224


>gi|332284936|ref|YP_004416847.1| hypothetical protein PT7_1683 [Pusillimonas sp. T7-7]
 gi|330428889|gb|AEC20223.1| hypothetical protein PT7_1683 [Pusillimonas sp. T7-7]
          Length = 252

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 76/218 (34%), Positives = 114/218 (52%), Gaps = 8/218 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           +TL+  + Y F + SLLE+ALTH S S  +    ERLEFLGD +L  ++++LLF  F   
Sbjct: 5   NTLQAALDYQFGDASLLEQALTHRSHSGPH---NERLEFLGDSVLNFVVASLLFVRFPKI 61

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+LS    +LV     + +A  L+L+ ++R+     K       SI AD +E+L AA+
Sbjct: 62  DEGDLSRLRANLVKQAALADIAGRLNLSQYLRLGEGELKSGGFRRPSILADALEALFAAV 121

Query: 127 YLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLDGG + A   + + ++     + +    +D KT LQE   A+    P Y V    G  
Sbjct: 122 YLDGGFDAAQQVIQRQYETILDNVDAKTLGKDPKTLLQELLQARKLDLPAYTVVATHGAA 181

Query: 185 HDPRFTVVVEIS--GLAPAQGMDCSKRAAEQVAAAEVL 220
           H+  F V  +I    +  + G   S+RAAEQ AA   +
Sbjct: 182 HNQLFEVECQIPVLDIKVSAG-GASRRAAEQSAAELAI 218


>gi|260583707|ref|ZP_05851455.1| ribonuclease III [Granulicatella elegans ATCC 700633]
 gi|260158333|gb|EEW93401.1| ribonuclease III [Granulicatella elegans ATCC 700633]
          Length = 234

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 116/225 (51%), Gaps = 7/225 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNH 62
             + K     F N + L++ALTHSS ++ +++      ER+EFLGD +L L IS  L+  
Sbjct: 9   EKIAKEFQIQFKNENYLKEALTHSSYANEHKDCKGIYNERIEFLGDAVLELFISNWLYRQ 68

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
             + KEGEL+     +V  E+ S +A+E +L  ++ +    R        ++  DV E+ 
Sbjct: 69  MPTKKEGELTKLRAQIVCEESLSTLAKECELDKYLLLGKGERASKGHENPAVLCDVFEAF 128

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180
           + A+YLD G E A  F+ +    + +K G+F    D KTELQE+      V   Y++   
Sbjct: 129 VGAIYLDQGFEGASQFLTQVIISK-IKDGRFTLVGDFKTELQEYFQRNGNVNIRYELLKE 187

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            GP H   +TV V ++      G   +K+AAEQ++A   L++  +
Sbjct: 188 EGPSHARYYTVQVHVNDKGYEIGEGKTKKAAEQLSARRTLEKLNV 232


>gi|227484649|ref|ZP_03914965.1| ribonuclease III [Anaerococcus lactolyticus ATCC 51172]
 gi|227237369|gb|EEI87384.1| ribonuclease III [Anaerococcus lactolyticus ATCC 51172]
          Length = 237

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 114/224 (50%), Gaps = 6/224 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLF 60
            +    EK IGY F +++L++ A THSS ++  +   +S ERLEFLGD IL +++S  LF
Sbjct: 9   EKIEEFEKSIGYTFNDKTLIDVAFTHSSFTNEARIKTKSNERLEFLGDTILDMVVSEYLF 68

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            ++    EG L+   + +V  ++ ++   + DL  ++R     +K        ++AD  E
Sbjct: 69  KNYKEKPEGWLTRTRSRIVCTDSFAKACEKFDLTKYLRFGMGEKKQGGKLKKHVKADTFE 128

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           +  AA+YLD   +    F+   + +     +       D KT LQE+ +A       Y++
Sbjct: 129 AFCAAIYLDSSYQRLFEFLKSNYSEEVLQIINDDSLFLDYKTRLQEYYNAHSKKNLSYEL 188

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
               GP+HD  FT+ V +   A AQG   +K+ AEQ+AA    +
Sbjct: 189 IKEVGPEHDKTFTMEVRLGNRALAQGEGKNKKTAEQMAAKAAYE 232


>gi|238063283|ref|ZP_04607992.1| ribonuclease III [Micromonospora sp. ATCC 39149]
 gi|237885094|gb|EEP73922.1| ribonuclease III [Micromonospora sp. ATCC 39149]
          Length = 296

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 110/225 (48%), Gaps = 9/225 (4%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
              LE   G +  +  LLE+ALTH S ++      + ERLEFLGD +LG++I+T LF++ 
Sbjct: 11  IGHLEAAFGVSL-DPELLERALTHRSYAYENGGLPTNERLEFLGDSVLGVVITTALFHNH 69

Query: 64  DSAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVE 120
               EG+L+    S+V+    + VAR L    L +++ +             SI AD +E
Sbjct: 70  PDLPEGQLAKLRASVVNMRALADVARGLGPDGLGAYLLLGKGEESTGGRDKASILADTLE 129

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +L+ A+YL  G++ A   + + +     +S       D KT LQE   A     PEY++ 
Sbjct: 130 ALLGAIYLQYGLDTAAIVIHRLFDPLMAESAGRGAALDWKTSLQELTAALGLGVPEYRIE 189

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +GPDH   FT  V ++G         SK+ AEQ AA    +  
Sbjct: 190 G-TGPDHLKTFTAWVVVAGNRYGGAEGRSKKEAEQRAAESAWREL 233


>gi|120602683|ref|YP_967083.1| ribonuclease III [Desulfovibrio vulgaris DP4]
 gi|120562912|gb|ABM28656.1| RNAse III [Desulfovibrio vulgaris DP4]
 gi|311234148|gb|ADP87002.1| ribonuclease III [Desulfovibrio vulgaris RCH1]
          Length = 228

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 112/224 (50%), Gaps = 7/224 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLIST 57
           M  +    L+K IG+ F +  LL  A+THSS ++      E  ERLEFLGD +L L +S 
Sbjct: 1   MKPVD--ELQKTIGHRFGDMELLLTAMTHSSWANEQAVPVEHNERLEFLGDAVLELCVSE 58

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF  F SA+EG+L+   + LVS  +   VAREL L   +R+             S+ +D
Sbjct: 59  ELFRRFPSAREGDLTRMRSRLVSKPSLEGVARELRLDMSLRLGKGEESQGGRERGSLLSD 118

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEY 175
            +E+++ A++LD G   A   V +       ++      +D K++LQE     F   P Y
Sbjct: 119 ALEAMLGAVFLDAGYIAAKGVVMRILGPHFPEALVPVRTKDYKSQLQELTQKLFRDRPVY 178

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            +   SGP+HD +F V V +      +    S + AEQ+AAA  
Sbjct: 179 TLLGSSGPEHDKQFDVRVVLPDGTVFEATGPSMKRAEQMAAARA 222


>gi|330836489|ref|YP_004411130.1| RNAse III [Spirochaeta coccoides DSM 17374]
 gi|329748392|gb|AEC01748.1| RNAse III [Spirochaeta coccoides DSM 17374]
          Length = 256

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 62/220 (28%), Positives = 108/220 (49%), Gaps = 5/220 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65
            +K  G  F +  LL  A TH S  +  +   ++ ERLEFLGD +LG ++S  LF +  +
Sbjct: 28  FQKNAGIKFHSLELLNLAFTHRSFFNESRHEVDNNERLEFLGDSVLGFMVSEWLFLNLPA 87

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+ S   + +V+ ++ +++A  L +  F+ +      +      +I AD +E++ AA
Sbjct: 88  RHEGDFSKIRSYVVNEDSLAEIALSLHVDRFLIIGKGEEMNGGRTKKTILADCMEAIFAA 147

Query: 126 LYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            YLD G++     + ++       +   + ++D KT LQE    ++   P Y++   SGP
Sbjct: 148 YYLDAGLKPVQELILRHLVPAIMVVLDDRHKKDYKTLLQEIIQKRYHKYPVYELLRTSGP 207

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +HD  F V V + G         +K+ AEQ AA    +  
Sbjct: 208 EHDRTFWVQVNVVGNIFGPASGANKKEAEQNAACAAYEAL 247


>gi|309789990|ref|ZP_07684566.1| ribonuclease III [Oscillochloris trichoides DG6]
 gi|308228010|gb|EFO81662.1| ribonuclease III [Oscillochloris trichoides DG6]
          Length = 235

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 72/209 (34%), Positives = 111/209 (53%), Gaps = 8/209 (3%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSY------QESYERLEFLGDRILGLLISTLLFN 61
            L++++G  F +  L  +A  H S  H +      +ES ERLEFLGD +L  L +  L+ 
Sbjct: 3   ELQRQLGIRFNDEELFTRAFVHRSFIHEHPERNRPRESNERLEFLGDAVLNFLSAAWLYA 62

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +F    EGEL+    +LV   T +  AR LDL   I++S      +     ++ ADV E+
Sbjct: 63  NFPDRTEGELTHLRAALVKTNTLAGFARSLDLGRHIKISRGEDTPIARNRPALLADVFEA 122

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           L+ A+YLD G++   TF+  +++ +   + SG    D +T LQE A ++F  TP Y++  
Sbjct: 123 LLGAIYLDQGLDAVRTFITPFFEHQIVVVLSGSDEVDYRTRLQEQAQSRFNRTPTYRMVD 182

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
            SGPDH   FT+ V I  +    G+  SK
Sbjct: 183 VSGPDHQREFTMEVVIDEVRYGVGVGTSK 211


>gi|90412086|ref|ZP_01220093.1| ribonuclease III [Photobacterium profundum 3TCK]
 gi|90327064|gb|EAS43443.1| ribonuclease III [Photobacterium profundum 3TCK]
          Length = 224

 Score =  242 bits (619), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 68/207 (32%), Positives = 110/207 (53%), Gaps = 6/207 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L++++GY F +  L+  +LTH S + ++    ERLEFLGD IL  +I+  L++ F   
Sbjct: 6   NRLQRKLGYQFNSTELMTLSLTHRSANGTH---NERLEFLGDSILSFVIADDLYHRFPHV 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG++S    +LV  +T +++ RE +L  ++ +     K       SI AD VE++I A+
Sbjct: 63  DEGDMSRMRATLVRGKTLAELGREFELGDYLLLGPGELKSGGFRRDSILADCVEAIIGAI 122

Query: 127 YLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD   E     +  +++ R   ++ G  ++D KT LQE    +    P Y VT   G  
Sbjct: 123 YLDSDTEQVRKVILSWYQSRLETIQPGINQKDPKTRLQECLQGRRLALPAYTVTKVHGEA 182

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRA 210
           H+  FTV  E++GL  P  G   S+R 
Sbjct: 183 HNQEFTVQCEVTGLDKPVIGKGSSRRK 209


>gi|254519218|ref|ZP_05131274.1| ribonuclease III [Clostridium sp. 7_2_43FAA]
 gi|226912967|gb|EEH98168.1| ribonuclease III [Clostridium sp. 7_2_43FAA]
          Length = 242

 Score =  242 bits (619), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 76/227 (33%), Positives = 116/227 (51%), Gaps = 4/227 (1%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58
           M+      +E  IG  F    LL+ ALTHSS ++ ++  E  ER EFLGD IL L I+  
Sbjct: 11  MAKFNIKEVEDSIGLTFNEPKLLKTALTHSSYANQHKDQEYNERFEFLGDSILQLCITEY 70

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF ++ +  EGEL+   + +V   +  ++ ++L+L  FIR+S            SI AD 
Sbjct: 71  LFLNYKNKSEGELTKIRSLIVCENSLYEIGKKLNLGYFIRISRGEELTGGRERVSIIADA 130

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYK 176
           VE+L+A +YLD G+E    ++  ++K+   K+       D KT+LQE       V+  Y+
Sbjct: 131 VEALLAGIYLDKGLEFVKDYIIGHFKEIIDKAINNDIVLDYKTKLQEEMQKSGEVSIIYE 190

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +    GP H  +F   V I      +G   SK+ +EQ AA E L+  
Sbjct: 191 LLKYEGPPHRRKFFTSVLIEDRELGKGEGYSKKESEQNAAKEALRNL 237


>gi|326382852|ref|ZP_08204542.1| ribonuclease III [Gordonia neofelifaecis NRRL B-59395]
 gi|326198442|gb|EGD55626.1| ribonuclease III [Gordonia neofelifaecis NRRL B-59395]
          Length = 234

 Score =  242 bits (619), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 111/222 (50%), Gaps = 9/222 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           L   +G    +  LL  ALTH S ++      + ERLEFLGD +LG++++  L+  F   
Sbjct: 10  LTDVLGVTIDD-ELLTLALTHRSYAYENGGLPTNERLEFLGDAVLGVVVTERLYVGFPDR 68

Query: 67  KEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            EGEL+    S+V+    + VAR L    L + +R+             SI AD +ESL 
Sbjct: 69  PEGELAKIRASVVNMHALADVARGLGEGGLGAHLRLGRGEELTGGRDKASILADGLESLF 128

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LD GIEVA T +   ++   ++SG+     D KT LQE +  +    P+Y+    +
Sbjct: 129 GAIFLDHGIEVAKTVIMNLFEPIIVRSGRLGAGLDWKTSLQELSAERSLGQPQYQ-ISST 187

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           GPDH+  FT V  + G     G   +K+ AEQ AA    K  
Sbjct: 188 GPDHNKEFTAVAVVGGDELGAGTGKTKKEAEQRAAELAWKAL 229


>gi|320161647|ref|YP_004174872.1| ribonuclease III [Anaerolinea thermophila UNI-1]
 gi|319995501|dbj|BAJ64272.1| ribonuclease III [Anaerolinea thermophila UNI-1]
          Length = 237

 Score =  242 bits (619), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 69/212 (32%), Positives = 108/212 (50%), Gaps = 5/212 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLL 59
           A        R+G +F +  LL +ALTH S  + + E     ERLEFLGD +L  ++   L
Sbjct: 7   AESPQEFANRLGLSFKSFFLLSRALTHRSYLNEHPEAIEDNERLEFLGDAVLDFVVGAWL 66

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +N +    EG+L+   + LVS E  S+ AR++DL   +R+     +       ++  D  
Sbjct: 67  YNRYPDMPEGDLTRMRSVLVSTEQLSEFARKVDLGRALRLGKGETQAGGRDRPALLCDAF 126

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD GIE    F++   ++    + + +   D K+ LQEWA  +    P Y V
Sbjct: 127 EAVIGAIYLDSGIEGVRRFIEPMLEKAADEILARQTIEDPKSMLQEWAQGQGFQAPRYIV 186

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
              SGP+H  +F V V I+G     G+  SK+
Sbjct: 187 RSSSGPEHSKQFEVDVLINGQIYGSGIGSSKQ 218


>gi|299067031|emb|CBJ38226.1| Ribonuclease III (RNase III) [Ralstonia solanacearum CMR15]
          Length = 256

 Score =  242 bits (619), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 73/221 (33%), Positives = 108/221 (48%), Gaps = 6/221 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +    L++R+ Y F+   LL++ALTH S         ERLEFLGD IL   ++ +L+  F
Sbjct: 1   MSLEALQQRLDYRFSKPELLQQALTHRS---HNAMHNERLEFLGDSILNCAVADMLYGMF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  +   ++A+ L L   +R+     K       SI AD +E++ 
Sbjct: 58  GKLDEGDLSRVRANLVKQQALYEIAQMLLLPDELRLGEGELKSGGFRRPSILADALEAIF 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG + A T + K +      +      +DAKT LQE+        P+Y V    
Sbjct: 118 GAVFLDGGFDAARTLIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYAVVATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221
           G  H+ +F V   I  L     G   S+RAAEQ AA   L+
Sbjct: 178 GAAHNQQFEVECTIPKLEIRVSGSGASRRAAEQSAAKLALE 218


>gi|167755900|ref|ZP_02428027.1| hypothetical protein CLORAM_01417 [Clostridium ramosum DSM 1402]
 gi|237734864|ref|ZP_04565345.1| ribonuclease III [Mollicutes bacterium D7]
 gi|167704839|gb|EDS19418.1| hypothetical protein CLORAM_01417 [Clostridium ramosum DSM 1402]
 gi|229382192|gb|EEO32283.1| ribonuclease III [Coprobacillus sp. D7]
          Length = 226

 Score =  242 bits (619), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 63/224 (28%), Positives = 105/224 (46%), Gaps = 4/224 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLF 60
           +      +++   + N  + ++A TH S ++  +     YERLEFLGD +L   +S  +F
Sbjct: 1   MELEQFLQKMEIPYQNIEIFKEAFTHPSYANENKMKNHDYERLEFLGDAVLQYHVSRHIF 60

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + +    EG L+     LV  E+ ++ ARELDL   I + +    +      S+ AD+ E
Sbjct: 61  DLYPELPEGRLTKLRAKLVREESLARFARELDLGPLIYLGAGELNNGGRDRDSVLADIFE 120

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + + A+  D G E     +D    +           D KT+LQE   A    T  Y +  
Sbjct: 121 AFMGAICHDCGPEYVEKMLDITIYKHVEDVNYDEITDFKTKLQELIQADQRKTVTYDLIS 180

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            SGP ++P F + V++  +    G+  SK+ AEQ AA + L + 
Sbjct: 181 SSGPSNNPVFEMAVKMDEMVLGVGVGSSKKRAEQQAAKDALNKL 224


>gi|54310187|ref|YP_131207.1| ribonuclease III [Photobacterium profundum SS9]
 gi|81615006|sp|Q6LMS2|RNC_PHOPR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|46914628|emb|CAG21405.1| putative ribonuclease III [Photobacterium profundum SS9]
          Length = 224

 Score =  242 bits (619), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 69/207 (33%), Positives = 109/207 (52%), Gaps = 6/207 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L++R+GY F +  L+  +LTH S +  +    ERLEFLGD IL  +I+  L++ F   
Sbjct: 6   NRLQRRLGYQFNSSELMTLSLTHRSANGKH---NERLEFLGDSILSFVIADDLYHRFPHV 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG++S    +LV  +T +++ RE +L  ++ +     K       SI AD VE++I A+
Sbjct: 63  DEGDMSRMRATLVRGKTLAELGREFELGDYLLLGPGELKSGGFRRDSILADCVEAIIGAI 122

Query: 127 YLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD   E     +  +++ R   ++ G  ++D KT LQE    +    P Y VT   G  
Sbjct: 123 YLDSDTEQVRKVILSWYQSRLETIQPGINQKDPKTRLQECLQGRRLALPAYTVTKVHGEA 182

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRA 210
           H+  FTV  E++GL  P  G   S+R 
Sbjct: 183 HNQEFTVQCEVTGLDKPVIGKGSSRRK 209


>gi|291454392|ref|ZP_06593782.1| ribonuclease III [Streptomyces albus J1074]
 gi|291357341|gb|EFE84243.1| ribonuclease III [Streptomyces albus J1074]
          Length = 265

 Score =  242 bits (619), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 80/224 (35%), Positives = 121/224 (54%), Gaps = 6/224 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           +A  ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L
Sbjct: 18  TASSHTLLEGRLGYHLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 76

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +       EG+L+    ++V++   ++V+R L+L SFIR+             SI AD +
Sbjct: 77  YRTHPDLPEGQLAKLRAAVVNSRALAEVSRGLELGSFIRLGRGEEGTGGRDKASILADTL 136

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD G+E AG  V + +     KS       D KT LQE    +    PEY V
Sbjct: 137 EAVIGAVYLDQGLEAAGELVHRLFDPLIEKSSSLGAGLDWKTSLQELTATEGLGVPEYLV 196

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           T  +GPDH+  FT    + G++   G   SK+ AEQ AA    +
Sbjct: 197 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWR 239


>gi|333024194|ref|ZP_08452258.1| putative ribonuclease III [Streptomyces sp. Tu6071]
 gi|332744046|gb|EGJ74487.1| putative ribonuclease III [Streptomyces sp. Tu6071]
          Length = 314

 Score =  242 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 78/220 (35%), Positives = 119/220 (54%), Gaps = 6/220 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           +A  ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L
Sbjct: 58  AASSHTLLEGRLGYHLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 116

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +       EG+L+    ++V++   ++V+R LDL +FIR+             SI AD +
Sbjct: 117 YRTHPDLPEGQLAKLRAAVVNSRALAEVSRGLDLGAFIRLGRGEEGTGGRDKASILADTL 176

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD G++ A   V + +     KS +     D KT LQE    +    PEY V
Sbjct: 177 EAVIGAVYLDQGLDKAAELVHRLFDPLIEKSAELGAGLDWKTSLQELTAMEGLGVPEYLV 236

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           T   GPDH+  FT    + G++   G   SK+ AEQ AA 
Sbjct: 237 T-EEGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 275


>gi|304436759|ref|ZP_07396727.1| ribonuclease III [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304370239|gb|EFM23896.1| ribonuclease III [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 238

 Score =  242 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 79/221 (35%), Positives = 116/221 (52%), Gaps = 5/221 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLFNHFD 64
            L   +G  FA+ S L++ALTH S ++    +    ERLEFLGD +L L IST L++ + 
Sbjct: 15  RLSASLGVDFADLSTLDEALTHPSYANEARGHAAHNERLEFLGDAVLELAISTYLYDAYP 74

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGEL+    SLV +ET +++AR L L + +R+         +   +   +V E++I 
Sbjct: 75  HCAEGELTKMRASLVQSETLARLARRLHLGAHLRMGRGEMLGGGAERQNNLENVFEAVIG 134

Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YLD G + A  +V + +      L+     +D KT LQE+          Y+    SG
Sbjct: 135 AVYLDRGWDAARAYVQRQFADELPHLRQEHVAQDYKTMLQEYVQGHDHEPIAYEQVAESG 194

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           PDHD RFT+ V I      +G   SK+ AEQ AAA  L+R 
Sbjct: 195 PDHDKRFTMRVRIGTAPLGEGTGRSKKEAEQHAAAAALERL 235


>gi|50954668|ref|YP_061956.1| ribonuclease III [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|81391047|sp|Q6AFJ4|RNC_LEIXX RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|50951150|gb|AAT88851.1| ribonuclease III [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 237

 Score =  242 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 78/217 (35%), Positives = 106/217 (48%), Gaps = 6/217 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
           S L +++G    +  LLE ALTH S ++      + ERLEFLGD ILG  ++  LF    
Sbjct: 9   SALLEKLGVDI-DPELLELALTHRSYAYENGGIPNNERLEFLGDSILGQAVTVKLFRENP 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGEL+ R  SLVS+   ++VAR + L  ++ +     +       SI AD VE++I 
Sbjct: 68  GLDEGELAKRRASLVSSVALAEVARGIGLGEYLLLGRGENQSGGREKASILADTVEAVIG 127

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YLD G + A   V +          +F    D KT LQE A       P Y V   +G
Sbjct: 128 AVYLDAGGDEATALVLRLIGPLLADPDRFGAAMDPKTSLQEAAAHHGAGQPVYTVIN-TG 186

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           PDH   F   V++ GL  A G   SK+ AE  AA   
Sbjct: 187 PDHSKTFHATVDVGGLVTASGEGTSKKQAEMAAALSA 223


>gi|220917396|ref|YP_002492700.1| Ribonuclease III [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955250|gb|ACL65634.1| Ribonuclease III [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 383

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 74/212 (34%), Positives = 113/212 (53%), Gaps = 6/212 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHF 63
            LE R+G A  +R     ALTH S  + ++E      ERLEFLGD ++ L +S  L   F
Sbjct: 27  ALEARLGIAVTDRQAALAALTHKSYVNEHREDGLQDNERLEFLGDAVIDLAVSHRLMERF 86

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            SA+EG+LS    ++V  +  + +AR LDL + +R+            +S+ AD +E++I
Sbjct: 87  PSAREGDLSKMRAAVVDEQGLAGMARALDLGTLLRLGRGEELTGGRQKSSLLADAMEAVI 146

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+Y   G+     FVD++  +   +  +G   RD KT+LQE + ++   TP Y+V    
Sbjct: 147 AAVYQGQGLPAVLCFVDRFLGEAFARAAAGTLDRDFKTQLQELSQSRLRATPRYRVVAEH 206

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
           GPDH   F V  ++ G    +G   SK+ AEQ
Sbjct: 207 GPDHSKTFEVETDLRGEVLGRGAGRSKKDAEQ 238


>gi|163856074|ref|YP_001630372.1| ribonuclease III [Bordetella petrii DSM 12804]
 gi|229564350|sp|A9IIJ2|RNC_BORPD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|163259802|emb|CAP42103.1| Ribonuclease III [Bordetella petrii]
          Length = 252

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 74/221 (33%), Positives = 112/221 (50%), Gaps = 6/221 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  +TLE R+ + F N +LLE+ALTH S S  +    ERLEFLGD +L  +++ +LF  F
Sbjct: 1   MSLATLETRLDHRFGNAALLEQALTHRSHSARH---NERLEFLGDSVLNFVVAAMLFERF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV   + + + + L+L+ ++R+     K       SI AD VE++ 
Sbjct: 58  PKLDEGDLSRLRANLVKQASLADIGQRLELSQYLRLGEGELKSGGFRRPSILADAVEAIF 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A +LDGG + A   + + ++     +      +DAKT LQE+   +    P Y V    
Sbjct: 118 GAAFLDGGFDTARKVIVRQYQPVLASVDPKTLGKDAKTLLQEFLQGRKLALPLYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221
           G  H  +F V   I  L         S+RAAEQ AA   L+
Sbjct: 178 GAAHSQQFEVECAIPALEIKVVAPGASRRAAEQSAAKLALE 218


>gi|223932807|ref|ZP_03624804.1| Ribonuclease III [Streptococcus suis 89/1591]
 gi|302023944|ref|ZP_07249155.1| ribonuclease III [Streptococcus suis 05HAS68]
 gi|330832996|ref|YP_004401821.1| ribonuclease III [Streptococcus suis ST3]
 gi|223898516|gb|EEF64880.1| Ribonuclease III [Streptococcus suis 89/1591]
 gi|329307219|gb|AEB81635.1| ribonuclease III [Streptococcus suis ST3]
          Length = 228

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 73/225 (32%), Positives = 107/225 (47%), Gaps = 7/225 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           ++ L    G  F++ +LLE A TH+S ++ ++       ERLEFLGD +L L+IS  L+ 
Sbjct: 5   HAKLLADFGIDFSDLNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLMISKYLYQ 64

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +    EGE+S   ++ V  E+ +  +R      F+R+     K       +I  D  E+
Sbjct: 65  KYPDRPEGEMSKLRSTFVREESLAGFSRACGFDRFLRLGKGEEKSGGRNRDTILGDAFEA 124

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179
            + AL LD G +    F+ K    R L+ G F R  D KT LQE       +   Y+V  
Sbjct: 125 FLGALLLDKGEKTVEEFIHKVMIPR-LEKGNFERVTDYKTALQEILQVNGEIAISYQVIA 183

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            SGP HD  F V V        +G   SK+ AEQ AA   ++  G
Sbjct: 184 ESGPAHDKTFEVEVSADRRVIGRGRGRSKKLAEQAAAKNAVEARG 228


>gi|325926994|ref|ZP_08188269.1| RNAse III [Xanthomonas perforans 91-118]
 gi|325928522|ref|ZP_08189710.1| RNAse III [Xanthomonas perforans 91-118]
 gi|325541061|gb|EGD12615.1| RNAse III [Xanthomonas perforans 91-118]
 gi|325542653|gb|EGD14120.1| RNAse III [Xanthomonas perforans 91-118]
          Length = 226

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 78/214 (36%), Positives = 111/214 (51%), Gaps = 6/214 (2%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           IG+AFA+ +LL +AL H S    +    ERLEFLGD I+ LLI+  L+  +  A EG L+
Sbjct: 12  IGHAFADPALLAQALRHRSAGTPH---NERLEFLGDGIVNLLIAEALYQRWPKADEGALT 68

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                LV     + + R L+L   + +     K       SI AD VE+++AA+YLD G 
Sbjct: 69  RARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDCGF 128

Query: 133 EVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           E     V  +++    AL  GK  +D KT LQEW  A+    P Y +   SG +H  +F 
Sbjct: 129 ERCRAVVLPWFEASLAALPVGKAEKDPKTRLQEWLQARQLPLPTYALISESGDEHAKQFH 188

Query: 191 VVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V   +   +A A+G   S+R AEQ AA  V+ + 
Sbjct: 189 VACILEQPVARAEGQGTSRRLAEQQAATLVIAQL 222


>gi|227500106|ref|ZP_03930177.1| ribonuclease III [Anaerococcus tetradius ATCC 35098]
 gi|227217821|gb|EEI83118.1| ribonuclease III [Anaerococcus tetradius ATCC 35098]
          Length = 239

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 67/224 (29%), Positives = 122/224 (54%), Gaps = 6/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLFN 61
           +    E++IGY+F ++ L++ A THSS ++     ++S ERLEFLGD IL +++S +LF 
Sbjct: 10  KIEEFEEKIGYSFNDKELIDVAFTHSSYTNEVKGKKKSNERLEFLGDSILDMIVSEILFK 69

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           ++    EG L+   + LV   + ++   +  ++S++   +  ++        ++AD  E+
Sbjct: 70  NYSQKPEGWLTKTRSRLVCTSSFAKACEKFQMSSYLNFGNGEKQGGGELKKHVKADTFEA 129

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA---LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           + AA+YLD   E    F+   +K  A   +       D KT+LQE+ +AK     +Y++T
Sbjct: 130 VCAAIYLDSSYENLFNFLVTNYKAEALHVINDDSIFNDYKTKLQEYHNAKDKKILKYELT 189

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              GP+H   FT+ V++     A G+  +K+ AEQ+AA    ++
Sbjct: 190 KEEGPEHSKTFTMAVKLGNKILAYGVGKNKKQAEQMAAKAAFEK 233


>gi|302522137|ref|ZP_07274479.1| ribonuclease III [Streptomyces sp. SPB78]
 gi|302431032|gb|EFL02848.1| ribonuclease III [Streptomyces sp. SPB78]
          Length = 286

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 78/220 (35%), Positives = 119/220 (54%), Gaps = 6/220 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           +A  ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L
Sbjct: 30  AASSHTLLEGRLGYHLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 88

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +       EG+L+    ++V++   ++V+R LDL +FIR+             SI AD +
Sbjct: 89  YRTHPDLPEGQLAKLRAAVVNSRALAEVSRGLDLGAFIRLGRGEEGTGGRDKASILADTL 148

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD G++ A   V + +     KS +     D KT LQE    +    PEY V
Sbjct: 149 EAVIGAVYLDQGLDKAAELVHRLFDPLIEKSAELGAGLDWKTSLQELTAMEGLGVPEYLV 208

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           T   GPDH+  FT    + G++   G   SK+ AEQ AA 
Sbjct: 209 T-EEGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 247


>gi|166712833|ref|ZP_02244040.1| ribonuclease III [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 226

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 77/214 (35%), Positives = 111/214 (51%), Gaps = 6/214 (2%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           IG+AFA+ +LL +AL H S    +    ERLEFLGD I+ LL++  L+  +  A EG L+
Sbjct: 12  IGHAFADPALLAQALRHRSAGTPH---NERLEFLGDGIVNLLVAEALYQRWPKADEGALT 68

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                LV     + + R L+L   + +     K       SI AD VE+++AA+YLD G 
Sbjct: 69  RARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDCGF 128

Query: 133 EVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           E     V  +++    AL  GK  +D KT LQEW  A+    P Y +   SG +H  +F 
Sbjct: 129 ERCRAVVLPWFEASLAALPVGKPEKDPKTRLQEWLQARQLPLPNYALISESGDEHAKQFH 188

Query: 191 VVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V   +   +A A+G   S+R AEQ AA  V+ + 
Sbjct: 189 VACILEQPVARAEGQGTSRRLAEQQAATLVIAQL 222


>gi|21242078|ref|NP_641660.1| ribonuclease III [Xanthomonas axonopodis pv. citri str. 306]
 gi|24212270|sp|Q8PMV0|RNC_XANAC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|21107485|gb|AAM36196.1| ribonuclease III [Xanthomonas axonopodis pv. citri str. 306]
          Length = 226

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 78/214 (36%), Positives = 112/214 (52%), Gaps = 6/214 (2%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           IG+AFA+ +LL +AL H S    +    ERLEFLGD I+ LLI+  L++ +  A EG L+
Sbjct: 12  IGHAFADPALLAQALRHRSAGTPH---NERLEFLGDGIVNLLIAEALYHRWPKADEGALT 68

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                LV     + + R L+L   + +     K       SI AD VE+++AA+YLD G 
Sbjct: 69  RARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDCGF 128

Query: 133 EVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           E     V  +++    AL  GK  +D KT LQEW  A+    P Y +   SG +H  +F 
Sbjct: 129 ERCRAVVLPWFEASLAALPVGKAEKDPKTRLQEWLQARQLPLPTYALISESGDEHAKQFH 188

Query: 191 VVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V   +   +A A+G   S+R AEQ AA  V+ + 
Sbjct: 189 VACILEQPVARAEGQGTSRRLAEQQAATLVIAQL 222


>gi|332305561|ref|YP_004433412.1| ribonuclease III [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332172890|gb|AEE22144.1| ribonuclease III [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 227

 Score =  241 bits (617), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 81/221 (36%), Positives = 118/221 (53%), Gaps = 6/221 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y  L K++GY F + + L  ALTH S+  ++    ERLEFLGD +LGL+I+  LF  F  
Sbjct: 7   YKPLYKKLGYEFQDPNNLTIALTHRSVGANH---NERLEFLGDAVLGLVIAKALFERFPK 63

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG L+   +SLV  +T ++VARE  L   + +     K       SI AD VE++I A
Sbjct: 64  QPEGNLTRMRSSLVKGDTLAEVAREFALGDLLLLGPGELKSGGHRRDSILADAVEAIIGA 123

Query: 126 LYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +Y + G++     +  ++ +R  AL      +D KT LQE+   +    PEY+V   SG 
Sbjct: 124 IYQEVGMQGCEPLILAWFAKRIEALNPDATPKDDKTRLQEYLQGRQLPLPEYEVIDISGK 183

Query: 184 DHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
            HD  FTV   ++GL +P  G   S+R AEQ  A + L+  
Sbjct: 184 SHDQTFTVKCTVAGLNSPIIGRGKSRRRAEQRTAKQALENL 224


>gi|24217145|ref|NP_714628.1| ribonuclease III [Leptospira interrogans serovar Lai str. 56601]
 gi|45655649|ref|YP_003458.1| dsRNase III [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|59798574|sp|Q75FW5|RNC_LEPIC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|59798588|sp|Q8EXX3|RNC_LEPIN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|24202183|gb|AAN51643.1| ribonuclease 3 [Leptospira interrogans serovar Lai str. 56601]
 gi|45602620|gb|AAS72095.1| dsRNase III [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 247

 Score =  241 bits (617), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 116/223 (52%), Gaps = 5/223 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFN 61
               L K+IG  F+       A  HSS  +  QE     ERLEFLGD +LGL+ +  LF 
Sbjct: 20  SLQKLSKKIGIKFSKVEYYNTAFIHSSYKNENQEILEDNERLEFLGDSVLGLVAARSLFR 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +  A EGELS   + +VS    + ++ +L+L+ ++ +    +  +      + A++ ES
Sbjct: 80  KYPKANEGELSRIKSRIVSTPILNSISEKLELSEYLLLGKGEKNSLGKGRRKLSANLFES 139

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTF 179
           L+ A+YLD G E+A  F+ ++  +      K    RD KT+LQE++   F + P Y+   
Sbjct: 140 LVGAIYLDQGFEIAEKFILRHLSEFVENPEKEESVRDYKTQLQEYSQKHFKILPIYRTKS 199

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            SGPDH   F VVV I     A G   SK++AEQ AA E+  R
Sbjct: 200 ESGPDHAKTFQVVVRIRDQWEASGSGVSKKSAEQNAAKELYNR 242


>gi|331005223|ref|ZP_08328616.1| Ribonuclease III [gamma proteobacterium IMCC1989]
 gi|330420966|gb|EGG95239.1| Ribonuclease III [gamma proteobacterium IMCC1989]
          Length = 217

 Score =  241 bits (617), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 85/215 (39%), Positives = 114/215 (53%), Gaps = 6/215 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               L+KRI Y F++ SLLE ALTH S S +   + ERLEFLGD +LG+ IS  LF  F 
Sbjct: 6   DLKQLQKRIDYQFSDESLLETALTHRSFSST---NNERLEFLGDSLLGVTISQQLFEQFP 62

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             KEG LS + + LV   T + +ARE  L+ ++ + S   K       SI AD VE++I 
Sbjct: 63  DVKEGILSRQRSRLVKGVTLAALAREFSLSDYLIMGSGELKSGGFRRDSILADTVEAIIG 122

Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A++LD  I+     + +++  R   L S    +D KT LQE   +K    P Y V    G
Sbjct: 123 AIFLDSDIQQCQKVILQWFHDRLQGLSSHDQLKDPKTRLQELLQSKKKPLPTYTVANIEG 182

Query: 183 PDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAA 216
             H+ RFTV   I+ L  A      S+R AEQ AA
Sbjct: 183 ASHEQRFTVDCGIALLDTAVTATAGSRRQAEQQAA 217


>gi|226322326|ref|ZP_03797844.1| hypothetical protein COPCOM_00087 [Coprococcus comes ATCC 27758]
 gi|225209248|gb|EEG91602.1| hypothetical protein COPCOM_00087 [Coprococcus comes ATCC 27758]
          Length = 252

 Score =  241 bits (617), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 73/209 (34%), Positives = 105/209 (50%), Gaps = 5/209 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
               LE++IGY F +  LL  A+THSS  +       +  ERLEFLGD +L L+ S  LF
Sbjct: 25  NVKELEEKIGYNFKDSHLLRHAVTHSSYVNEKHMKKADCNERLEFLGDAVLELISSEYLF 84

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
               +  EGEL+    S+V  +  +  AR+L+L S++ +          F  SI +D +E
Sbjct: 85  FENQTMPEGELTKLRASMVCEKALAFCARDLELGSYLLLGKGEDATGGRFRESITSDALE 144

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +LI A+YLDGG   A  F+ KY     L+  +   D+KT LQE           Y++   
Sbjct: 145 ALIGAIYLDGGFANAKEFILKYIL-NDLEGKRLFYDSKTILQEMVQGGQEKGIVYQLVGE 203

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            GPDH+  F V   I G A   G+  +K+
Sbjct: 204 EGPDHNKSFRVEAVIGGEAFGCGIGRTKK 232


>gi|70728453|ref|YP_258202.1| ribonuclease III [Pseudomonas fluorescens Pf-5]
 gi|68342752|gb|AAY90358.1| ribonuclease III [Pseudomonas fluorescens Pf-5]
          Length = 225

 Score =  241 bits (617), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 78/210 (37%), Positives = 111/210 (52%), Gaps = 6/210 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S LE+++GY+F ++ L+  ALTH S +     + ERLEFLGD IL  +    LF  F  A
Sbjct: 2   SRLERQLGYSFKDQELMLLALTHRSFA---GRNNERLEFLGDAILNFVAGEALFERFPQA 58

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +EG+LS     LV  ET + +AR  DL  ++R+ S   K       SI AD +E+LI A+
Sbjct: 59  REGQLSRLRARLVKGETLAVLARGFDLGEYLRLGSGELKSGGFRRESILADALEALIGAI 118

Query: 127 YLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD G+E A   V  +      +L      +D KT LQE+  ++    P Y+V    G  
Sbjct: 119 YLDAGMETARDRVLSWLASEFESLTLVDTNKDPKTRLQEFLQSRACELPRYEVVDIQGEP 178

Query: 185 HDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213
           H   F V  E++ L   ++G   S+R AEQ
Sbjct: 179 HCRTFFVECEVTLLNEKSRGQGVSRRIAEQ 208


>gi|292670166|ref|ZP_06603592.1| ribonuclease III [Selenomonas noxia ATCC 43541]
 gi|292648118|gb|EFF66090.1| ribonuclease III [Selenomonas noxia ATCC 43541]
          Length = 238

 Score =  241 bits (617), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 73/217 (33%), Positives = 113/217 (52%), Gaps = 8/217 (3%)

Query: 1   MSALRYSTLEKR---IGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLL 54
           M   R + L +    +G +F + +LL++ALTH S ++  ++     ERLEFLGD +L L 
Sbjct: 5   MKDERLAQLMRLSAEMGVSFNDFALLDEALTHPSYTNEAKDTIPHNERLEFLGDAVLELA 64

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
            ST L+  F    EGEL+    SLV + T +++AR LDL S +R+      +  +   + 
Sbjct: 65  SSTYLYARFPDCSEGELTKMRASLVQSNTLARLARALDLGSCLRLGRGEFHNGGADRQNN 124

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVT 172
             +  E++I A+YLD G E A  +V +   + A  +K  +   D KT LQE    +    
Sbjct: 125 LENAFEAVIGAVYLDAGWETAKEYVARQLSREADHIKKAQVVHDYKTTLQEHIQQRRNKG 184

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
             Y++   SGPDHD RFT+ V +      +G   SK+
Sbjct: 185 IVYELIDESGPDHDKRFTMRVLVDNQPIGEGAGRSKK 221


>gi|297568930|ref|YP_003690274.1| ribonuclease III [Desulfurivibrio alkaliphilus AHT2]
 gi|296924845|gb|ADH85655.1| ribonuclease III [Desulfurivibrio alkaliphilus AHT2]
          Length = 232

 Score =  241 bits (617), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 72/204 (35%), Positives = 99/204 (48%), Gaps = 5/204 (2%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLFNHFDSA 66
           +R+GY F +  LL +ALTH S +       +   ERLEFLGD +L L +  LL+      
Sbjct: 12  QRLGYCFHDPQLLRQALTHRSFTAEGGGRGRPHNERLEFLGDAVLDLAVGELLYRRHPKM 71

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +EGELS R  +LV+    +++AR   L   + +     +       SI AD  E+L+ A+
Sbjct: 72  REGELSRRRAALVNEAHLARMARRTGLDELLLLGRGEAQSGGRDKPSILADAFEALLGAV 131

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           YLDGG         + +         F   DAKT LQE    + G  P Y++    GP H
Sbjct: 132 YLDGGCRAVLDLAAELFAPWVTDQDDFEENDAKTALQEVLQERHGQAPGYRLVAEEGPAH 191

Query: 186 DPRFTVVVEISGLAPAQGMDCSKR 209
           D RFTV VE  G    QG   SK+
Sbjct: 192 DKRFTVEVEFRGRVMGQGKARSKK 215


>gi|229822809|ref|ZP_04448879.1| hypothetical protein GCWU000282_00098 [Catonella morbi ATCC 51271]
 gi|229787622|gb|EEP23736.1| hypothetical protein GCWU000282_00098 [Catonella morbi ATCC 51271]
          Length = 247

 Score =  241 bits (617), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 66/214 (30%), Positives = 113/214 (52%), Gaps = 5/214 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTLLFNHFD 64
           +EK++   F    L+++A  H+S ++     +   YERLEFLGD +L LL S  L++ + 
Sbjct: 10  IEKQLNLTFKKPELIQQAFRHTSYANEQARRHLPHYERLEFLGDAVLELLSSEFLYHSYP 69

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EG+L+     +V  ++ + +AR+L    F+++             SI AD  E+++ 
Sbjct: 70  NLPEGKLTRMRAQIVQEKSLAYLARQLKFNQFLQLGKGEELSGGRERDSILADCFEAVLG 129

Query: 125 ALYLDGGIEVAGTFVDKY-WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           A+Y D G+EVA  ++++  + Q  L  G+  +D KT  QE    +  V  +Y++  + GP
Sbjct: 130 AIYEDQGLEVAKDYLNRVMFSQHQLLLGRVTQDHKTLFQERVQKQGTVQIDYRLKDKQGP 189

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
            HD  FTV + ++    A G   SK+ AE  AA 
Sbjct: 190 AHDQIFTVELYVNDQHIATGQGSSKKQAEMQAAE 223


>gi|78046932|ref|YP_363107.1| ribonuclease III [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|90101655|sp|Q3BVV6|RNC_XANC5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|78035362|emb|CAJ23007.1| ribonuclease III [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 226

 Score =  241 bits (617), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 78/214 (36%), Positives = 111/214 (51%), Gaps = 6/214 (2%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           IG+AFA+ +LL +AL H S    +    ERLEFLGD I+ LLI+  L+  +  A EG L+
Sbjct: 12  IGHAFADPALLARALRHRSAGTPH---NERLEFLGDGIVNLLIAEALYQRWPKADEGALT 68

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                LV     + + R L+L   + +     K       SI AD VE+++AA+YLD G 
Sbjct: 69  RARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDCGF 128

Query: 133 EVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           E     V  +++    AL  GK  +D KT LQEW  A+    P Y +   SG +H  +F 
Sbjct: 129 ERCRAVVLPWFEASLAALPVGKAEKDPKTRLQEWLQARQLPLPTYALISESGDEHAKQFH 188

Query: 191 VVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V   +   +A A+G   S+R AEQ AA  V+ + 
Sbjct: 189 VACILEQPVARAEGQGTSRRLAEQQAATLVIAQL 222


>gi|58581478|ref|YP_200494.1| ribonuclease III [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84623408|ref|YP_450780.1| ribonuclease III [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|75435762|sp|Q5H1R2|RNC_XANOR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|58426072|gb|AAW75109.1| ribonuclease III [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84367348|dbj|BAE68506.1| ribonuclease III [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 226

 Score =  241 bits (617), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 77/214 (35%), Positives = 110/214 (51%), Gaps = 6/214 (2%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           IG+AFA+  LL +AL H S    +    ERLEFLGD I+ LL++  L+  +  A EG L+
Sbjct: 12  IGHAFADPDLLAQALRHRSAGTPH---NERLEFLGDGIVNLLVAEALYQRWPKADEGALT 68

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                LV     + + R L+L   + +     K       SI AD VE+++AA+YLD G 
Sbjct: 69  RARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVEAIVAAIYLDCGF 128

Query: 133 EVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           E     V  +++    AL  GK  +D KT LQEW  A+    P Y +   SG +H  +F 
Sbjct: 129 ERCRAVVLPWFEASLAALPVGKAEKDPKTRLQEWLQARQLPLPNYALISESGDEHAKQFH 188

Query: 191 VVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V   +   +A A+G   S+R AEQ AA  V+ + 
Sbjct: 189 VACILEQPVARAEGQGTSRRLAEQQAATLVIAQL 222


>gi|78485079|ref|YP_391004.1| ribonuclease III [Thiomicrospira crunogena XCL-2]
 gi|78363365|gb|ABB41330.1| RNAse III [Thiomicrospira crunogena XCL-2]
          Length = 233

 Score =  241 bits (617), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 77/219 (35%), Positives = 118/219 (53%), Gaps = 6/219 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           + + L K +GY + N   L++ALTH S+     ++ ERLEFLGD ++  +I+  LF+ F 
Sbjct: 9   KLNRLSKSLGYQYKNIEFLQRALTHRSMG---AKNNERLEFLGDSLVNFMIADALFHQFH 65

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+LS     LV  ET +++ +E  L+ ++ +     K       SI AD VE++IA
Sbjct: 66  KISEGDLSRIRAFLVKGETLAKIGKEYQLSDYLMLGPGELKSGGYRRESIIADTVEAIIA 125

Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           ++Y DGG++    FV + ++ R   L   K  +D KT LQE+  +     PEY V   +G
Sbjct: 126 SVYEDGGLDACRAFVMRLYENRLKELDPSKIGKDPKTRLQEFLQSNREQLPEYSVMTVNG 185

Query: 183 PDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVL 220
           P H   FTV   ++ L    +    ++R AEQVAA E L
Sbjct: 186 PAHAQEFTVSCYVAKLNRKFEATATNRRKAEQVAAQEAL 224


>gi|170720259|ref|YP_001747947.1| ribonuclease III [Pseudomonas putida W619]
 gi|229564376|sp|B1J4E0|RNC_PSEPW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|169758262|gb|ACA71578.1| Ribonuclease III [Pseudomonas putida W619]
          Length = 229

 Score =  241 bits (617), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 77/218 (35%), Positives = 112/218 (51%), Gaps = 11/218 (5%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           MSA   + LE+++GY F ++  +  ALTH S +     + ERLEFLGD IL  +    LF
Sbjct: 1   MSA-SLARLERKLGYTFKDQDQMVLALTHRSYA---GRNNERLEFLGDAILNFVAGEALF 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A+EG+LS     LV  ET +++AR  DL  ++R+ S   K       SI AD +E
Sbjct: 57  ERFPQAREGQLSRLRARLVKGETLARLARGFDLGEYLRLGSGELKSGGFRRESILADALE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI A+YLD  ++ A   V  +      +L      +D KT LQE+  ++    P Y+V 
Sbjct: 117 ALIGAIYLDADMQTARERVLAWLTDEFESLTLVDTNKDPKTRLQEFLQSRSCELPRYEVV 176

Query: 179 FRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQ 213
              G  H   F V  E+   +  +  QG+  S+R AEQ
Sbjct: 177 DIQGEPHCRTFFVECEVVLLNNKSRGQGV--SRRIAEQ 212


>gi|270304349|gb|ACZ71259.1| RNAse type III [Escherichia coli BL21]
          Length = 226

 Score =  241 bits (616), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 67/213 (31%), Positives = 114/213 (53%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH     + ++  ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFNHQELLQQALTHR---RASRKHNERLEFLGDSILSYVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+ +   K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGTGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++L+  I+     +  +++ R   +  G  ++D KT + E+   +    P Y V 
Sbjct: 118 ALIGGVFLESDIQTVEKLILNWYQTRVDEISPGDKQKDPKTRVHEYLQGRHLPLPTYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 210


>gi|256847360|ref|ZP_05552806.1| ribonuclease III [Lactobacillus coleohominis 101-4-CHN]
 gi|256716024|gb|EEU30999.1| ribonuclease III [Lactobacillus coleohominis 101-4-CHN]
          Length = 233

 Score =  241 bits (616), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 105/229 (45%), Gaps = 7/229 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLIS 56
           M       L       F N  LL +A T +S  + + E     YER+EFLGD +L L +S
Sbjct: 1   MITELQQYLADEFDIHFQNPDLLAEAFTQASYVNEHPEQHLKYYERIEFLGDAVLQLFVS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             ++  +    +G+L+    ++V  ++ S+ A+E     +IR+              +  
Sbjct: 61  EYIYRRYPELLQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGKGEEMAGARNRPGLLC 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D+ ES I ALYLD G +    F+ +    + L  G F    D KT LQE+      V  E
Sbjct: 121 DIFESFIGALYLDQGRDAVERFIHRVIFPK-LDMGWFDHAVDTKTSLQEFLQRDGDVDIE 179

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           Y +   +G ++ P F V V   G   AQG   SK+ AE  AAA+ LK+ 
Sbjct: 180 YHLLDETGSENAPEFKVNVSADGQVLAQGTGSSKKHAEMDAAAQALKKL 228


>gi|331091059|ref|ZP_08339901.1| ribonuclease III [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330405281|gb|EGG84817.1| ribonuclease III [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 231

 Score =  241 bits (616), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 72/209 (34%), Positives = 104/209 (49%), Gaps = 5/209 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLF 60
           +   LEK+IGY F    LL +A+ HSS ++       E  ERLEFLGD +L L+ S  LF
Sbjct: 4   KLKELEKKIGYKFQRFDLLCQAMRHSSYANEKHMEKNECNERLEFLGDAVLELVSSEFLF 63

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                  EGEL+    S+V   + +  AREL+L S++ +          +  S+ +D +E
Sbjct: 64  FENKKMPEGELTRTRASIVCEPSLAFCARELNLGSYLLLGKGEENTGGRYRESLTSDALE 123

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +LI A+YLDGG   A  F+ ++     L+  K   D+KT LQE     F    EY +   
Sbjct: 124 ALIGAIYLDGGFASAKEFIHRFVL-NDLEHKKLFFDSKTILQEIVQGNFNEPIEYTLLKE 182

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            GPDH+  F + V I       G   +K+
Sbjct: 183 EGPDHNKSFFISVSIGNEVYGNGKGRTKK 211


>gi|323702685|ref|ZP_08114346.1| ribonuclease III [Desulfotomaculum nigrificans DSM 574]
 gi|323532348|gb|EGB22226.1| ribonuclease III [Desulfotomaculum nigrificans DSM 574]
          Length = 204

 Score =  241 bits (616), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 70/187 (37%), Positives = 92/187 (49%), Gaps = 2/187 (1%)

Query: 39  SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
             +RLEFLGD +L LLIS  L+  F    EGEL+    + V   + ++VAR LDL   +R
Sbjct: 3   HNQRLEFLGDAVLELLISEYLYQRFPDRTEGELTKMRAASVCEPSLAKVARGLDLGRCLR 62

Query: 99  VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRD 156
           +     +       SI AD  E+L+ A+YLD G+E A  FV +          +G+  RD
Sbjct: 63  MGRGEERSGGRERPSILADAFEALLGAIYLDHGLEAARKFVLEQLNPIITDVVAGRLDRD 122

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            KTELQE           Y +   +GPDHD  FT  V   G    QG   SK+ AEQ AA
Sbjct: 123 YKTELQERLQQNSPDPVSYVIMKETGPDHDKVFTAGVIYRGQIIGQGSGHSKKEAEQQAA 182

Query: 217 AEVLKRE 223
            +   R 
Sbjct: 183 KDAFNRL 189


>gi|189043297|sp|A8Z6F6|RNC_CAMC1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|158604915|gb|ABW74738.1| ribonuclease III [Campylobacter concisus 13826]
          Length = 223

 Score =  241 bits (616), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 68/220 (30%), Positives = 113/220 (51%), Gaps = 4/220 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
                E+ +GY F    LLE+ALTH S   +   + ERLEFLGD ++ LL++  LF  F 
Sbjct: 3   NLEEFERNLGYKFKKSELLEEALTHKSTKQAL--NNERLEFLGDAVMDLLVAEYLFKKFS 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG++S    +LV+ ++ + +AR L +  F+R+S     +      SI +D  E+++ 
Sbjct: 61  KIAEGDMSKLRAALVNEKSFANMARRLKMGEFLRLSQAEENNGGREKDSILSDAFEAVMG 120

Query: 125 ALYLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YL+ G+           +     +      +D KT LQE   A  GV P Y++    G
Sbjct: 121 AIYLEAGLLKVREISISLLELCYPQIDFAHLEKDYKTALQEVTQATLGVIPTYELIGSFG 180

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           PDH   F + + ++G   ++ +  SK+ A+Q+AA   L++
Sbjct: 181 PDHKKEFEIALLLNGKEISRAVGSSKKQAQQLAAKIALEK 220


>gi|190575414|ref|YP_001973259.1| ribonuclease III [Stenotrophomonas maltophilia K279a]
 gi|190013336|emb|CAQ46970.1| putative ribonuclease III [Stenotrophomonas maltophilia K279a]
          Length = 226

 Score =  241 bits (616), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 75/217 (34%), Positives = 113/217 (52%), Gaps = 7/217 (3%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
             IG+AF++ +LL++ALTH S    +    ERLEFLGD I+ ++ +  L+  +  A EG 
Sbjct: 10  DLIGHAFSDPALLKQALTHRSAGAPH---NERLEFLGDSIVNMMAAEALYRRWPKADEGA 66

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           ++     LV     + +AR L L   + +     K       SI AD VE+++AA+YLD 
Sbjct: 67  MTRARAELVREGALAVIARTLQLGERLTLGPGEMKSGGHRRDSILADAVEAVVAAIYLDA 126

Query: 131 GIEVAGTFVDKYW---KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           G E     V  ++    +    SG+  +D KT LQEW  A+    P+Y++   SG DH  
Sbjct: 127 GFEACRAVVLPWFSASIEALPASGRPEKDPKTRLQEWLQARQKALPQYELVSESGDDHAK 186

Query: 188 RFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
            F V   ++   A  +G   S+R AEQ AAA VL++ 
Sbjct: 187 HFRVRCNVADPAASTEGEGASRRLAEQQAAAAVLEQL 223


>gi|15672784|ref|NP_266958.1| ribonuclease III [Lactococcus lactis subsp. lactis Il1403]
 gi|13878708|sp|Q9CHD0|RNC_LACLA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|12723723|gb|AAK04900.1|AE006313_7 ribonuclease III [Lactococcus lactis subsp. lactis Il1403]
 gi|326406354|gb|ADZ63425.1| ribonuclease III [Lactococcus lactis subsp. lactis CV56]
          Length = 231

 Score =  241 bits (616), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 104/223 (46%), Gaps = 9/223 (4%)

Query: 8   TLEKRI----GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59
            L+K++    G  F +  LL+ A THSS ++  +     + ERLEFLGD  L L+IS  L
Sbjct: 3   KLQKKLKNDYGLVFNDEDLLKTAFTHSSFTNEERLPKIANNERLEFLGDVALSLVISDYL 62

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  +    EGELS   +S+V  E+ +  +R      F+R+     K       +   ++ 
Sbjct: 63  YRTYPEKLEGELSKMRSSIVRTESLANFSRSCGFGEFLRLGHGEEKMGGRDRETTLENLF 122

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVT 178
           E+ + AL++D G++    F+              +  D KTELQE        T  YK+ 
Sbjct: 123 EAFLGALFIDQGMDEVRKFIQHVVIPHVKNDDYVKVIDYKTELQEVLQIGGETTISYKIL 182

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              GP HD  F   V  +G    +G+  SK+ AEQ AA   +K
Sbjct: 183 KEEGPAHDRSFVAAVFNNGKELGRGLGKSKKVAEQKAAENAIK 225


>gi|332298046|ref|YP_004439968.1| Ribonuclease 3 [Treponema brennaborense DSM 12168]
 gi|332181149|gb|AEE16837.1| Ribonuclease 3 [Treponema brennaborense DSM 12168]
          Length = 256

 Score =  241 bits (616), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 74/229 (32%), Positives = 109/229 (47%), Gaps = 8/229 (3%)

Query: 1   MSALRYSTL---EKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLL 54
           +SA R + L   E+ I   F +  LL+ A  H S S+       + ERLEFLGD +LG+ 
Sbjct: 21  LSAARRNQLLDFERAISVHFNDLQLLDLAFHHRSYSNEGANTRYNNERLEFLGDAVLGMA 80

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
            +T L+       EG+L+   + +VS  T + +A E+ + S + +             +I
Sbjct: 81  TATYLYESMLERPEGDLARIKSVVVSEMTLAPIALEIGVDSCLVLGKGEELSGGRTKKAI 140

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVT 172
            AD VE++I A YLD G   A   V +       K    K  RD KT LQE+   K+   
Sbjct: 141 LADAVEAVIGAYYLDSGYSAAEKLVLELIVPEIQKVLQNKHHRDYKTLLQEFYQKKYKEC 200

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           P Y++  R+GPDHD  F V V +  +        +K+ AEQ AA    +
Sbjct: 201 PVYELVKRTGPDHDRTFWVSVHLHSVTYGPASGKNKKEAEQSAARLAWE 249


>gi|116511619|ref|YP_808835.1| ribonuclease III [Lactococcus lactis subsp. cremoris SK11]
 gi|122940253|sp|Q030F9|RNC_LACLS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|116107273|gb|ABJ72413.1| RNAse III [Lactococcus lactis subsp. cremoris SK11]
          Length = 231

 Score =  241 bits (616), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 66/223 (29%), Positives = 103/223 (46%), Gaps = 9/223 (4%)

Query: 8   TLEKRI----GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59
            L++++    G  F +  LL+ A THSS ++  +     + ERLEFLGD  L L+IS  L
Sbjct: 3   KLQEKLKNDYGLVFNDEDLLKTAFTHSSFTNEERLPKIANNERLEFLGDVALSLVISDYL 62

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  +    EGELS   +S+V  E+ +  +R      F+R+     K       +   ++ 
Sbjct: 63  YRTYPEKLEGELSKMRSSIVRTESLANFSRSCGFGEFLRLGHGEEKMGGRDRETTLENLF 122

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVT 178
           E+ + AL++D G++    F+              +  D KTELQE        T  Y + 
Sbjct: 123 EAFLGALFIDQGMDEVRKFIQHVVIPHVKNDDYVKVIDYKTELQEVLQVGGETTITYNIL 182

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              GP HD  F   V  +G    +G+  SK+ AEQ AA   +K
Sbjct: 183 KEEGPAHDRSFVAAVYNNGKELGRGLGKSKKVAEQKAAENAIK 225


>gi|226943497|ref|YP_002798570.1| ribonuclease III [Azotobacter vinelandii DJ]
 gi|259491898|sp|C1DQS2|RNC_AZOVD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226718424|gb|ACO77595.1| ribonuclease III [Azotobacter vinelandii DJ]
          Length = 229

 Score =  241 bits (616), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 77/218 (35%), Positives = 105/218 (48%), Gaps = 11/218 (5%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           MSA   + LE+++G+ F N+ L+  ALTH S +     + ERLEFLGD IL  +    LF
Sbjct: 1   MSA-SLNRLERKLGHTFKNQDLMLLALTHRSFA---SRNNERLEFLGDAILNFVAGEALF 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  AKEG+LS     LV  ET + +AR  DL   +R+ S   K       SI AD +E
Sbjct: 57  ERFPQAKEGQLSRLRARLVKGETLALLARGFDLGDHLRLGSGELKSGGFRRESILADALE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI A+YLD G+      V  +       L      +D KT LQE+  ++    P Y+V 
Sbjct: 117 ALIGAIYLDAGLNTVRERVLGWLAGELDSLTLVDTNKDPKTRLQEFLQSRACELPRYEVV 176

Query: 179 FRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQ 213
              G  H   F V   +   +      G   S+R AEQ
Sbjct: 177 DIQGEPHCRTFFVECRVALLNDKTY--GQGASRRIAEQ 212


>gi|239982550|ref|ZP_04705074.1| ribonuclease III [Streptomyces albus J1074]
          Length = 260

 Score =  241 bits (616), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 80/224 (35%), Positives = 121/224 (54%), Gaps = 6/224 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           +A  ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L
Sbjct: 13  TASSHTLLEGRLGYHLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 71

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +       EG+L+    ++V++   ++V+R L+L SFIR+             SI AD +
Sbjct: 72  YRTHPDLPEGQLAKLRAAVVNSRALAEVSRGLELGSFIRLGRGEEGTGGRDKASILADTL 131

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD G+E AG  V + +     KS       D KT LQE    +    PEY V
Sbjct: 132 EAVIGAVYLDQGLEAAGELVHRLFDPLIEKSSSLGAGLDWKTSLQELTATEGLGVPEYLV 191

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           T  +GPDH+  FT    + G++   G   SK+ AEQ AA    +
Sbjct: 192 T-ETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWR 234


>gi|328466160|gb|EGF37317.1| ribonuclease III [Listeria monocytogenes 1816]
          Length = 222

 Score =  241 bits (615), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 62/209 (29%), Positives = 104/209 (49%), Gaps = 5/209 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++  L++ +G+ F +  LL++A THSS  + ++    +  ERLEFLGD +L L +S  LF
Sbjct: 3   QWEELQESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSNYLF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N +    EG ++    ++V   +  + A  +  + ++R+     K       ++ ADV E
Sbjct: 63  NKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTF 179
           S I ALYLD GI+   TF+++    +       +  D KT+LQE       V  EY +  
Sbjct: 123 SFIGALYLDNGIDKVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIVQRDRDVLIEYDILG 182

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
            +GP H+  F   V ++G    +G    K
Sbjct: 183 ETGPAHNKAFDAQVIVNGQVLGKGSGRQK 211


>gi|315499946|ref|YP_004088749.1| ribonuclease iii [Asticcacaulis excentricus CB 48]
 gi|315417958|gb|ADU14598.1| ribonuclease III [Asticcacaulis excentricus CB 48]
          Length = 242

 Score =  241 bits (615), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 89/226 (39%), Positives = 125/226 (55%), Gaps = 6/226 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-----SYERLEFLGDRILGLLISTLLF 60
              LE ++GY FA+R LL+ ALTH+S+S    +       ERLEFLGDR+LGLL++  L 
Sbjct: 16  LDELEAKLGYRFADRQLLDSALTHASVSDGRPKKTVSSDNERLEFLGDRVLGLLVAEALM 75

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGE+S R + LVS ETC+ VA  L + + +R++    K       +I  D  E
Sbjct: 76  QAFPQAAEGEMSQRLHGLVSRETCAAVAMSLGVGAAMRLAPGETKSGGRSNLTILGDACE 135

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTF 179
           +LIAA+YLDGG E A       W+     S      + K+ LQEWA  K   +P+Y++  
Sbjct: 136 ALIAAVYLDGGFETARRIFGPLWQPHIRASHSRSHLNPKSHLQEWAAQKKLPSPKYEIVE 195

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           RSGPDH P F V + + G  P      S++ AE+ AA   ++  G+
Sbjct: 196 RSGPDHAPIFKVALTLEGYDPVVASGKSRQEAEKAAALSFIEHAGL 241


>gi|238753924|ref|ZP_04615284.1| Ribonuclease 3 [Yersinia ruckeri ATCC 29473]
 gi|238707912|gb|EEQ00270.1| Ribonuclease 3 [Yersinia ruckeri ATCC 29473]
          Length = 226

 Score =  241 bits (615), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 74/213 (34%), Positives = 113/213 (53%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F  + LL +ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVITRLQRKLGYTFQQQELLLQALTHRSASSKH---NERLEFLGDSILSFVIANELY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD GI+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSGIQTVERLILDWYRSRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLGEPVVGTGSSRRK 210


>gi|330993372|ref|ZP_08317307.1| Ribonuclease 3 [Gluconacetobacter sp. SXCC-1]
 gi|329759402|gb|EGG75911.1| Ribonuclease 3 [Gluconacetobacter sp. SXCC-1]
          Length = 258

 Score =  241 bits (615), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 85/237 (35%), Positives = 124/237 (52%), Gaps = 15/237 (6%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES--------------YERLEFLG 47
            A     LE  +GY F    LL +ALTH S +H    +               ERLEF+G
Sbjct: 7   PAAEIRRLEACLGYHFTRPELLLRALTHRSAAHERSGNRRTRQNVATRGAGSNERLEFIG 66

Query: 48  DRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107
           DR+LGL+++  L   F + +EG L  R   LVS    ++VA  + L S + V+    +  
Sbjct: 67  DRVLGLVMAEWLLERFPTEQEGALGPRHAHLVSRTVLAEVAHAMALQSALDVAEHEARAG 126

Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHA 167
              M ++ AD VE+++ A+YLDGG++ A  FV + W+   +   +  +D KT LQEW   
Sbjct: 127 VRQMANVLADAVEAILGAIYLDGGLDPARAFVRRMWQDAIVAQARPPKDPKTALQEWVLG 186

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +    P Y+V    GP H PRF + V+  G    QG+  SKRAAE  AAA++L++ G
Sbjct: 187 RGLPLPRYRVVSAEGPSHAPRFVIAVDAQGKT-GQGVAGSKRAAESDAAADLLRQLG 242


>gi|146278605|ref|YP_001168764.1| ribonuclease III [Rhodobacter sphaeroides ATCC 17025]
 gi|189043338|sp|A4WVP5|RNC_RHOS5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|145556846|gb|ABP71459.1| RNAse III [Rhodobacter sphaeroides ATCC 17025]
          Length = 229

 Score =  241 bits (615), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 84/211 (39%), Positives = 120/211 (56%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           +      E RIG+AF     L +A+TH+S+S + +   +RLEFLGDR+LGL+++  L   
Sbjct: 4   STDLRAFESRIGHAFREPDRLLRAVTHASLSSATRPDNQRLEFLGDRVLGLVMAEALLAA 63

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
             +A EG+L+ RFN+LV  ETC+ VARE+ L   +++             ++  D +E++
Sbjct: 64  DKAATEGQLAPRFNALVRKETCAAVAREVGLGDVLKLGRSEMMSGGRRKEALLGDALEAV 123

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           IAA+YLD G E A   V + W +R  +     RDAKT LQEWA A+    P Y+   RSG
Sbjct: 124 IAAVYLDAGFEAARRLVLRLWGERIAQVEADARDAKTALQEWAQARGLPPPCYEAVDRSG 183

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
           PDH P FTV V +      +    +KR AEQ
Sbjct: 184 PDHAPIFTVEVRLGNGETERSAAGTKRVAEQ 214


>gi|32266198|ref|NP_860230.1| ribonuclease III [Helicobacter hepaticus ATCC 51449]
 gi|81666107|sp|Q7VIA9|RNC_HELHP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|32262248|gb|AAP77296.1| ribonuclease III [Helicobacter hepaticus ATCC 51449]
          Length = 240

 Score =  241 bits (615), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 75/217 (34%), Positives = 113/217 (52%), Gaps = 4/217 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LEK++GY F N+ LL +ALTH S    Y  + ERLEFLGD +L LL+   LF  F  AKE
Sbjct: 13  LEKKLGYVFQNQQLLLEALTHKSCKKQY--NNERLEFLGDAVLDLLVGEYLFKKFPLAKE 70

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GELS     +V+ +   ++A+ LDL +++ +S     +      SI ++  E+LI A+YL
Sbjct: 71  GELSKLRACIVNEKGFMKLAQSLDLGAYLYISQSEENNNGRQKASILSNAFEALIGAIYL 130

Query: 129 DGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           +  +    + +    +   +K        D KT LQE   A +G  P Y +   SGPDH 
Sbjct: 131 ESSLTYVQSIIYDLLEYNYIKIDLDSLFMDYKTALQEITQAFYGEIPTYTLISESGPDHK 190

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F + + + G   A+    SK+ A+Q +A    K+ 
Sbjct: 191 KSFEIALSVQGKEYARASGNSKKEAQQKSAQIAYKKL 227


>gi|220934266|ref|YP_002513165.1| Ribonuclease III [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995576|gb|ACL72178.1| Ribonuclease III [Thioalkalivibrio sp. HL-EbGR7]
          Length = 228

 Score =  241 bits (615), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 70/208 (33%), Positives = 103/208 (49%), Gaps = 6/208 (2%)

Query: 18  ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
            +  LL +ALTH S       + ERLE+LGD +LG++++  LF     A EG+LS    +
Sbjct: 15  HDSELLTEALTHRSAGSP---NNERLEYLGDAVLGMVMAEHLFKAHPEASEGDLSRLRAT 71

Query: 78  LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137
           LV+ ++ + + +   L   I +     K   +   SI AD VE++I A+YLD G + A  
Sbjct: 72  LVNKDSLAVIGKAQGLGGHINLGQGELKSGGARRNSILADAVEAVIGAVYLDSGFDAARR 131

Query: 138 FVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
           FV   +  R   L +    +D KT LQEW   +    P Y+VT  +G  H+ RF  +  +
Sbjct: 132 FVLALYADRLESLPALDALKDPKTRLQEWLQGRSRELPVYEVTSVTGKAHEQRFRALCRV 191

Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                  G   S+R AEQ AA   LK  
Sbjct: 192 GDQEY-PGEGTSRRRAEQAAAECALKAL 218


>gi|114566311|ref|YP_753465.1| ribonuclease III [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|122318607|sp|Q0AYW0|RNC_SYNWW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|114337246|gb|ABI68094.1| RNAse III [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 233

 Score =  241 bits (615), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 64/204 (31%), Positives = 100/204 (49%), Gaps = 3/204 (1%)

Query: 21  SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            L+  ALTH S +       + +RLEFLGD +L L+++  L+NH+    EGEL+     +
Sbjct: 23  ELITMALTHPSYAQEKNTVANNQRLEFLGDAVLNLVVAEYLYNHYGRKAEGELTKIRAKV 82

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138
           V  +  +  AR ++L  ++ +             SI AD VE++I A+YLD G+E    F
Sbjct: 83  VCEDALAIFARNINLGQYLLLGRGEEMSGGRKRKSILADAVEAVIGAIYLDQGLETVQRF 142

Query: 139 VDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197
           + +  ++   ++      D K++LQE   A+      Y +   SGP H   F   V    
Sbjct: 143 IIRQLEELISETASGDYYDYKSKLQELVQARDKENVSYAIIEESGPAHAKVFVAGVYYRE 202

Query: 198 LAPAQGMDCSKRAAEQVAAAEVLK 221
              A G   SK+ AEQ AA +VL+
Sbjct: 203 QLLATGEGKSKKEAEQKAAQKVLQ 226


>gi|94676727|ref|YP_588731.1| ribonuclease III [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
 gi|94219877|gb|ABF14036.1| ribonuclease III [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
          Length = 225

 Score =  241 bits (615), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 77/212 (36%), Positives = 119/212 (56%), Gaps = 7/212 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ L  + L+K+IGY F N++LL +ALTH S S+ +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNCL-LNNLQKKIGYYFQNQNLLLQALTHRSASNKH---NERLEFLGDSILSYVIAHALY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG++S    +LV   T +++AREL+L++ +R+     K       SI AD VE
Sbjct: 57  QRFQYINEGDMSRMRATLVRGNTLAEIARELNLSTCLRLGIGELKSGGLSRDSILADAVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI +++LD  I     F+   ++ R   +  G+ ++D KT LQE+   +    P Y + 
Sbjct: 117 ALIGSIFLDSNIFTVEKFILNLYRSRLNKIIPGERQKDPKTRLQEYLQGQHMPLPIYIIV 176

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKR 209
             SG  HD RF +  +++ LA P  G   S+R
Sbjct: 177 QISGETHDQRFIIHCQVNNLANPIIGHGSSRR 208


>gi|77462220|ref|YP_351724.1| RNAse III [Rhodobacter sphaeroides 2.4.1]
 gi|126461082|ref|YP_001042196.1| ribonuclease III [Rhodobacter sphaeroides ATCC 17029]
 gi|221641174|ref|YP_002527436.1| Ribonuclease 3 [Rhodobacter sphaeroides KD131]
 gi|332560101|ref|ZP_08414423.1| ribonuclease III [Rhodobacter sphaeroides WS8N]
 gi|90101641|sp|Q3J5W1|RNC_RHOS4 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043337|sp|A3PGF8|RNC_RHOS1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807895|sp|B9KSA7|RNC_RHOSK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|77386638|gb|ABA77823.1| RNAse III [Rhodobacter sphaeroides 2.4.1]
 gi|126102746|gb|ABN75424.1| RNAse III [Rhodobacter sphaeroides ATCC 17029]
 gi|221161955|gb|ACM02935.1| Ribonuclease 3 [Rhodobacter sphaeroides KD131]
 gi|332277813|gb|EGJ23128.1| ribonuclease III [Rhodobacter sphaeroides WS8N]
          Length = 229

 Score =  241 bits (615), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 84/211 (39%), Positives = 118/211 (55%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           +      E RIG+ F     L +A+THSS+S   +   +RLEFLGDR+LGL+++  L   
Sbjct: 4   SADLKAFEGRIGHQFREPERLLRAVTHSSLSSVTRSDNQRLEFLGDRVLGLVMAEALLAA 63

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
             +A EG+L+ RFN+LV  ETC+ VARE+ L   +++             ++  D +E++
Sbjct: 64  DRAASEGQLAPRFNALVRKETCAAVAREVALGDVLKLGRSEMMSGGRRKEALLGDALEAV 123

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           IAA+YLD G E A   V + W  R  +  +  RDAKT LQEWA A+    P Y+   RSG
Sbjct: 124 IAAVYLDAGFEAARQLVLRLWGARIAQVERDARDAKTALQEWAQARGLPPPTYEAVDRSG 183

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
           PDH P FTV V +      +    +KR AEQ
Sbjct: 184 PDHAPIFTVEVRLGNGETDRAAAGTKRVAEQ 214


>gi|320536816|ref|ZP_08036812.1| ribonuclease III [Treponema phagedenis F0421]
 gi|320146325|gb|EFW37945.1| ribonuclease III [Treponema phagedenis F0421]
          Length = 243

 Score =  240 bits (614), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 77/216 (35%), Positives = 109/216 (50%), Gaps = 5/216 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS 65
            +K+ G+ F N  LL  A  H S SH ++   ++ ERLEFLGD +LGL+ ++ L+N    
Sbjct: 19  FQKKAGFKFKNLKLLNLAFHHRSFSHIHEASFQNNERLEFLGDSVLGLVTASCLYNLLSD 78

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGEL+     LVS ET S +A  LD+  +I +             +I AD +E++I A
Sbjct: 79  CSEGELAKTKAVLVSEETLSDIALSLDVDKYIMLGRGEEMSGGRRKKAILADAMEAIIGA 138

Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           LYLD G +VA  FV +    +   +++     D K+ LQE +  KF + P Y V    GP
Sbjct: 139 LYLDSGFKVAEKFVLRIITPKIPLVRNENLHMDYKSALQELSQKKFQILPLYTVVKAQGP 198

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           DHD  F V V+I           SK+ A Q  A   
Sbjct: 199 DHDRTFWVEVQIHTKKYGPATGKSKKEAAQAVAELA 234


>gi|317125435|ref|YP_004099547.1| RNAse III [Intrasporangium calvum DSM 43043]
 gi|315589523|gb|ADU48820.1| RNAse III [Intrasporangium calvum DSM 43043]
          Length = 265

 Score =  240 bits (614), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 68/220 (30%), Positives = 108/220 (49%), Gaps = 6/220 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
            + LE+ +G    +  LL ++LTH S ++      + ERLEFLGD +LGL+++  L+   
Sbjct: 24  LAHLEEVVGQEI-DEPLLLRSLTHRSFAYENGGVPNNERLEFLGDSVLGLVVTDTLYRSH 82

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+L+    ++V+    + VAR  DL  ++ +             SI AD +E+LI
Sbjct: 83  PDLPEGQLAKLRAAVVNMRALADVARTFDLGQYVMLGKGEEATGGRDKASILADSMEALI 142

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRS 181
             +YL   I++A  F+  ++     ++       D KT LQ+ A A     PEY+V    
Sbjct: 143 GTVYLSTDIDLAAQFIHHHFDAILEEAATLGAGLDWKTSLQQVAAAVGQGAPEYRV-AEQ 201

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           GPDH+  F   V +      +G   SK+ AEQ AA E  +
Sbjct: 202 GPDHEKEFHARVVLGEEVLGEGHGRSKKEAEQKAAQEAWQ 241


>gi|15924223|ref|NP_371757.1| ribonuclease III [Staphylococcus aureus subsp. aureus Mu50]
 gi|156979554|ref|YP_001441813.1| ribonuclease III [Staphylococcus aureus subsp. aureus Mu3]
 gi|255006020|ref|ZP_05144621.2| ribonuclease III [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|22654068|sp|Q931T1|RNC_STAAM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043357|sp|A7X1J9|RNC_STAA1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|14247003|dbj|BAB57395.1| RNase III [Staphylococcus aureus subsp. aureus Mu50]
 gi|156721689|dbj|BAF78106.1| RNase III [Staphylococcus aureus subsp. aureus Mu3]
          Length = 243

 Score =  240 bits (614), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 65/224 (29%), Positives = 105/224 (46%), Gaps = 5/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           R+ T    +G+ + N  L ++A +HSS  + +     +  ERLEFLGD +L L +S  LF
Sbjct: 16  RFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLF 75

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           +   +  EG L+    ++V   +    A ++ L   I +     K       S+ +D  E
Sbjct: 76  DKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLISDAFE 135

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTF 179
           + I ALYLD G+++   F +K       ++      D KT+ QE+ H +      Y +  
Sbjct: 136 AFIGALYLDQGLDIVWKFAEKVIFPHVEQNELLGVVDFKTQFQEYVHQQNKGDVTYNLIK 195

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             GP H   FT  V + G A A+G   +K+ +EQ AA    K+ 
Sbjct: 196 EEGPAHHRLFTSEVILQGEAIAEGKGKTKKESEQRAAKSAYKQL 239


>gi|229086402|ref|ZP_04218578.1| Ribonuclease 3 [Bacillus cereus Rock3-44]
 gi|228696918|gb|EEL49727.1| Ribonuclease 3 [Bacillus cereus Rock3-44]
          Length = 245

 Score =  240 bits (614), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 61/209 (29%), Positives = 100/209 (47%), Gaps = 5/209 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           + T +++IG  F +  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 19  FKTFQQKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A EL   + + +             ++ ADV E+
Sbjct: 79  KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGNLVLLGKGEEMTGGRERPALLADVFEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            I ALYLD G++    F+ +    +  +       D K++LQE          EY++   
Sbjct: 139 FIGALYLDQGLDTVWGFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQE 198

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            GP H+  F   V ++ +A   G   SK+
Sbjct: 199 KGPAHNREFVSRVTLNNVALGLGSGKSKK 227


>gi|227488592|ref|ZP_03918908.1| ribonuclease III [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227091486|gb|EEI26798.1| ribonuclease III [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 250

 Score =  240 bits (614), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 69/220 (31%), Positives = 110/220 (50%), Gaps = 6/220 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61
           + ++ L +++G   +   LL  ALTH S ++      + ERLEFLGD +LG  ++  LF 
Sbjct: 20  VDHAPLLEKLGTTVS-PELLRLALTHRSFANENGGLPNNERLEFLGDSVLGCSVAWKLFE 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + S+ E  +S     +VS    + +ARE+ L  +I +             SI AD  E+
Sbjct: 79  TYPSSPESVISKMRARIVSRFGLADIAREIGLGKYILLGRGEILTDGRDKDSILADTTEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           +  A++L+ G E A   +   + ++ + +       D KT LQE A  +    PEY+ +F
Sbjct: 139 IFGAIFLEHGFEAARHTILTLFHEKIVHASSDSIHTDWKTLLQERAAERKLPMPEYEASF 198

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            +GPDHD  FT    I G     G   +K+AAEQ+AA + 
Sbjct: 199 -TGPDHDRFFTATAIIDGKVVGTGQGHNKKAAEQLAAKQA 237


>gi|295109853|emb|CBL23806.1| RNAse III [Ruminococcus obeum A2-162]
          Length = 223

 Score =  240 bits (614), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 78/207 (37%), Positives = 109/207 (52%), Gaps = 5/207 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62
             LE+ IGY F N+ LL++ALTHSS ++  +       ERLEFLGD +L L+ S  L+  
Sbjct: 2   EQLEQIIGYTFQNKKLLKQALTHSSYANEKKLGKLGCNERLEFLGDAVLELISSDFLYRK 61

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EGEL+ +  SLV   + +  ARE  L  F+ +             SI +D  E+L
Sbjct: 62  FSQIPEGELTKKRASLVCEPSLAYCAREFGLPEFLLLGKGENMTGGRNRDSIVSDATEAL 121

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           + A+YLDGG   A  FV  +     ++  +   D+KT LQE    K     EY +T   G
Sbjct: 122 LGAIYLDGGFSNAKKFVLNFIL-NDIEHKQLFYDSKTILQELVQEKGLQPIEYVLTGEDG 180

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209
           PDHD RFTVVV+++G     G   +K+
Sbjct: 181 PDHDKRFTVVVQVNGQVVGSGTGHTKK 207


>gi|239948355|ref|ZP_04700108.1| GTP-binding protein Era [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239922631|gb|EER22655.1| GTP-binding protein Era [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 567

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 76/224 (33%), Positives = 113/224 (50%), Gaps = 5/224 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59
             +  LEK + Y+F N+ LL +AL+H S+   ++    + YERLEFLGD +L L+I+ +L
Sbjct: 2   ESFEKLEKLLSYSFKNKELLIEALSHPSLRQHHEYKDDKDYERLEFLGDAVLNLVITEIL 61

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F +F +  EG L+   + LV  ET   V  +L L  +I ++            +   +  
Sbjct: 62  FKNFANYNEGNLAKIRSYLVCKETICMVGAKLALKDYIIMTHGEEVVGGRDNPNNIENAT 121

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E+LIAA+YLD  IE     + K W++          D KT LQEWA A     P Y++  
Sbjct: 122 EALIAAIYLDSNIETTHNIIGKLWEEFIKVQNLTDYDPKTALQEWAQASDHHLPIYRLIK 181

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           R G  H   FTV+V++       G   S + AE+ AA  +L R 
Sbjct: 182 REGAAHSSTFTVLVKVKDYEQ-TGTGHSIKEAEKNAARSLLHRL 224


>gi|289662799|ref|ZP_06484380.1| ribonuclease III [Xanthomonas campestris pv. vasculorum NCPPB702]
 gi|289670321|ref|ZP_06491396.1| ribonuclease III [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 227

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 81/226 (35%), Positives = 114/226 (50%), Gaps = 6/226 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+A R       IG+AFA+ +LL +AL H S    +    ERLEFLGD I+ LLI+  L+
Sbjct: 1   MAANRTFQRGDLIGHAFADPALLAQALRHRSAGTPH---NERLEFLGDGIVNLLIAEALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             +  A EG L+     LV     + + R L+L   + +     K       SI AD VE
Sbjct: 58  QRWPKADEGALTRARAELVREGALAVIGRTLNLGERLTLGPGELKSGGHRRDSILADAVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +++AA+YLD G E     V  +++    AL  GK  +D KT LQEW  A+    P Y + 
Sbjct: 118 AIVAAIYLDCGFERCRAVVLPWFEASLAALPVGKAEKDPKTRLQEWLQARQLPLPNYALI 177

Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
             SG +H  +F V   +    A A+G   S+R AEQ AA  V+ + 
Sbjct: 178 SESGDEHAKQFHVACILEQPTARAEGQGTSRRLAEQQAATLVIAQL 223


>gi|197122613|ref|YP_002134564.1| ribonuclease III [Anaeromyxobacter sp. K]
 gi|196172462|gb|ACG73435.1| Ribonuclease III [Anaeromyxobacter sp. K]
          Length = 383

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 74/212 (34%), Positives = 113/212 (53%), Gaps = 6/212 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHF 63
            LE R+G A  +R     ALTH S  + ++E      ERLEFLGD ++ L +S  L   F
Sbjct: 27  ALEARLGIAVTDRQAALAALTHKSYVNEHREDGLQDNERLEFLGDAVIDLAVSHRLMERF 86

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            SA+EG+LS    ++V  +  + +AR LDL + +R+            +S+ AD +E++I
Sbjct: 87  PSAREGDLSKMRAAVVDEQGLAGMARALDLGTLLRLGRGEELTGGRQKSSLLADAMEAVI 146

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+Y   G+     FVD++  +   +  +G   RD KT+LQE + ++   TP Y+V    
Sbjct: 147 AAVYQGQGLPAVLCFVDRFLGEAFARAAAGTLDRDFKTQLQELSQSRLRATPRYRVVAEH 206

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
           GPDH   F V  ++ G    +G   SK+ AEQ
Sbjct: 207 GPDHSKTFEVETDLRGEVLGRGAGRSKKDAEQ 238


>gi|57866684|ref|YP_188382.1| ribonuclease III [Staphylococcus epidermidis RP62A]
 gi|242242516|ref|ZP_04796961.1| ribonuclease III [Staphylococcus epidermidis W23144]
 gi|73917583|sp|Q5HPV8|RNC_STAEQ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|57637342|gb|AAW54130.1| ribonuclease III [Staphylococcus epidermidis RP62A]
 gi|242234024|gb|EES36336.1| ribonuclease III [Staphylococcus epidermidis W23144]
 gi|319401475|gb|EFV89685.1| ribonuclease III [Staphylococcus epidermidis FRI909]
          Length = 245

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 65/222 (29%), Positives = 103/222 (46%), Gaps = 5/222 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           +++   K +G  F N  L ++A +HSS  + +     E  ERLEFLGD +L L +S  LF
Sbjct: 16  KFTDKMKSLGLHFKNIDLYQQAFSHSSFINDFNMNRLEHNERLEFLGDAVLELTVSRYLF 75

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           +      EG L+    ++V   +    A ++ L   I +     K       S+ +D  E
Sbjct: 76  DRHPHLPEGNLTKMRATIVCEPSLVIFANKIKLNELILLGKGEEKTGGRTRPSLISDAFE 135

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTF 179
           + + ALYLD G++   TF +K               D KT+ QE+ H++      Y++  
Sbjct: 136 AFVGALYLDQGLDTVWTFAEKVIFPYVEDDELVGVVDFKTQFQEYVHSQNKGDVTYQLIK 195

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             GP H   FT  V +   A A+G   +K+ +EQ AA +  K
Sbjct: 196 EEGPAHHRLFTSEVILENKAVAEGKGKTKKESEQKAAEQAYK 237


>gi|310815100|ref|YP_003963064.1| ribonuclease III [Ketogulonicigenium vulgare Y25]
 gi|308753835|gb|ADO41764.1| ribonuclease III [Ketogulonicigenium vulgare Y25]
          Length = 228

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 88/213 (41%), Positives = 121/213 (56%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
              R+G+ F N  +L +ALTH S S   +   +RLEFLGDR+LGL+++  L      A E
Sbjct: 10  FADRLGHRFINTEVLMRALTHGSASSPDRSDNQRLEFLGDRVLGLVVAEALLAADKFATE 69

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+++ RFN LV  ETC++VAR +DL + +R+     K       ++ AD +E++IAA+YL
Sbjct: 70  GQIAPRFNRLVRRETCAEVARAMDLGAALRIGRSEMKTGGRKKEAVLADAMEAVIAAVYL 129

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           D G + A + V K+W           RDAKT LQEWA  +    P Y    RSGPDH P 
Sbjct: 130 DAGFDAAKSVVLKHWAAHIANVDDDARDAKTALQEWAQGRGETPPAYIEEARSGPDHAPI 189

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           FTV V +     A G   SKR AE  AA ++L+
Sbjct: 190 FTVRVTLQSGPTATGEAGSKRLAEHAAATKLLQ 222


>gi|307823639|ref|ZP_07653868.1| ribonuclease III [Methylobacter tundripaludum SV96]
 gi|307735624|gb|EFO06472.1| ribonuclease III [Methylobacter tundripaludum SV96]
          Length = 227

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 74/220 (33%), Positives = 115/220 (52%), Gaps = 6/220 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +   L K++G  F N  L   ALTH S S +   + ERLEFLGD ILG +I+  LF  F 
Sbjct: 4   KPEELCKKLGLKFNNPQLFTMALTHRSASSN---NNERLEFLGDSILGFVIAQKLFELFP 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            A EG LS    SLV+  + +++AR+  L  ++ + S   K       SI +D VE++I 
Sbjct: 61  GACEGVLSRLRASLVNQGSLAELARKHQLGDYLLLGSGELKSGGFRRDSILSDAVEAIIG 120

Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           ALY D G++ +  ++ + + ++   L    +++D KT+LQE   ++    P+Y +   SG
Sbjct: 121 ALYNDQGMDASQQWILQLFAEKLKSLSLDNWQKDPKTQLQELMQSRKMELPDYTLMTMSG 180

Query: 183 PDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLK 221
             H+  F V         P  G   S++ AEQ AA  +L+
Sbjct: 181 LAHEQTFKVKCTTPLTAEPCIGTGNSRKKAEQSAAELMLE 220


>gi|46445908|ref|YP_007273.1| putative ribonuclease III [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|81627660|sp|Q6MEK1|RNC_PARUW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|46399549|emb|CAF22998.1| putative Ribonuclease III [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 242

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 72/219 (32%), Positives = 110/219 (50%), Gaps = 9/219 (4%)

Query: 1   MSALRYS-----TLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILG 52
           M+ + +       +E ++GY F +  LL  A  H S  +  +E     ERLEFLGD +LG
Sbjct: 8   MNPIEHVIRQAPAIEAKLGYTFKDPQLLVLAFVHRSFINENREVNQHNERLEFLGDSVLG 67

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
           +LIS  L+       EG+LS   + LV A +C    + LDL+ ++ +    R +      
Sbjct: 68  MLISDYLYCKLPKTPEGQLSYLRSRLVEASSCVHYIQSLDLSGYLLLGKGERMNDGRGRE 127

Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGV 171
           SI AD+ E++I A+YLDGG++ A  F+ K + Q   +      R+ K  LQ++    +  
Sbjct: 128 SILADLFEAIIGAIYLDGGLQAAKDFLFKNFHQHIEIILATPLRNWKALLQDYCQKNYQQ 187

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
           TP Y+V   SGPDH   F + V I      +G   SK+ 
Sbjct: 188 TPLYQVLHESGPDHSKVFQISVWIQDRELGRGKGTSKKE 226


>gi|209964796|ref|YP_002297711.1| ribonuclease III [Rhodospirillum centenum SW]
 gi|209958262|gb|ACI98898.1| ribonuclease III [Rhodospirillum centenum SW]
          Length = 236

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 82/207 (39%), Positives = 109/207 (52%), Gaps = 3/207 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSIS---HSYQESYERLEFLGDRILGLLISTLLFNH 62
            S LE  +GY F +R LL +ALTH S+     +    YERLEFLGDR+LGL+I+  L   
Sbjct: 11  LSELETGLGYHFRHRDLLVQALTHPSLGGVERNAGRGYERLEFLGDRVLGLVIAEWLLER 70

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F +  EG L+ R  +LV AE  + VA  + L  F+R++   R        +I AD  E++
Sbjct: 71  FPAEAEGALARRHTALVRAEALTVVAETIGLGPFLRLAPSERDSGGQAKPAILADACEAV 130

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           I A++ DGG+E A T +   W           +D KT LQEWA  +    P Y+   R G
Sbjct: 131 IGAIFQDGGLEPARTLIRTRWTPLIEADLSPPQDPKTALQEWALGRGRPLPAYETLSREG 190

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209
           PDH P F V V + G  PA     SKR
Sbjct: 191 PDHAPVFRVRVRVEGAEPATATGPSKR 217


>gi|170289493|ref|YP_001739731.1| ribonuclease III [Thermotoga sp. RQ2]
 gi|238688867|sp|B1LCY9|RNC_THESQ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|170176996|gb|ACB10048.1| Ribonuclease III [Thermotoga sp. RQ2]
          Length = 240

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 114/228 (50%), Gaps = 11/228 (4%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-------ESYERLEFLGDRILGLLISTL 58
               +K+ G  F N  LL +AL HSS ++          ES E+LEFLGD +L L +  +
Sbjct: 9   VEEFQKKTGINFKNEELLFRALCHSSYANEQNQAGRKNVESNEKLEFLGDAVLELFVCEI 68

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L+  +  A+ G+L+   ++  S E  + V+R+++L  F+ +     K       SI AD 
Sbjct: 69  LYKKYPEAEVGDLARVKSAAASEEVLALVSRKMNLGKFLFLGKGEEKTGGRDRDSILADA 128

Query: 119 VESLIAALYLDGGIEVAGTFVDK---YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
            E+L+AA+YLD G E      ++   ++ ++ +K G+   D KT LQE   ++  V PEY
Sbjct: 129 FEALLAAIYLDQGYEKIKELFEQEFEFYIEKIMK-GEMLFDYKTALQEIVQSEHKVPPEY 187

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +      D D  F V V + G   A G   +K+ AE+ AA    ++ 
Sbjct: 188 VLVRTEKNDGDRIFVVEVRVDGKTIATGRGRTKKEAEKEAARIAYEKL 235


>gi|15838837|ref|NP_299525.1| ribonuclease III [Xylella fastidiosa 9a5c]
 gi|9107400|gb|AAF85045.1|AE004037_6 ribonuclease III [Xylella fastidiosa 9a5c]
          Length = 212

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 74/210 (35%), Positives = 106/210 (50%), Gaps = 6/210 (2%)

Query: 17  FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           F + SLL +AL H S    +    ERLEFLGD ++ LLI+  LF  +  A EG L+   +
Sbjct: 2   FTDPSLLLQALRHCSAGTPH---NERLEFLGDSVVNLLIAEALFQRWPRADEGALTRARS 58

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
            LV   + + +AR + L   + +     K       SI AD VE++IAA+YLD  +    
Sbjct: 59  ELVRETSLASIARTMQLGEQLILGPGELKSGGHRRDSILADAVEAVIAAIYLDADLATCR 118

Query: 137 TFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
           T V  +++    AL  GK  +D KT LQEW  A+    P Y++ F SG  H   F V   
Sbjct: 119 TVVLPWFETALTALPVGKPEKDPKTRLQEWLQARQWSLPVYELIFESGDPHTKHFRVSCT 178

Query: 195 ISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223
           +  L    +G   S+R AEQ AA+  + + 
Sbjct: 179 LGELKLRTEGEGSSRRLAEQDAASHAIDQL 208


>gi|95930677|ref|ZP_01313411.1| Ribonuclease III [Desulfuromonas acetoxidans DSM 684]
 gi|95133329|gb|EAT14994.1| Ribonuclease III [Desulfuromonas acetoxidans DSM 684]
          Length = 244

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 71/208 (34%), Positives = 112/208 (53%), Gaps = 5/208 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLF 60
             S  E+R+GY F +R  L+ AL H S ++          ER EFLGD +L L+++  LF
Sbjct: 12  ELSQFEERLGYRFTDRHYLQTALIHKSYANEQLRDPAACNERQEFLGDAVLDLVMADYLF 71

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             +    EGELS   + LVSA   ++VAR L+L   +++    R+       ++ AD +E
Sbjct: 72  CTYPQLPEGELSRIRSELVSARALAKVARRLNLGPCLKLGRGERRSGGQDKDNLLADALE 131

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTF 179
           ++  A++LD G +VA   + + ++  A+++ + +  D KT  QE A A+FG  PEY++  
Sbjct: 132 AVFGAVFLDAGWDVARDVLGRMFEGTAVQAARRKSLDYKTRFQELAQARFGAAPEYELVA 191

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             GPDH   +TV+V   G    QG   S
Sbjct: 192 TEGPDHQREYTVIVSCEGRHLGQGSGGS 219


>gi|254481213|ref|ZP_05094458.1| ribonuclease III [marine gamma proteobacterium HTCC2148]
 gi|214038376|gb|EEB79038.1| ribonuclease III [marine gamma proteobacterium HTCC2148]
          Length = 232

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 74/210 (35%), Positives = 116/210 (55%), Gaps = 6/210 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             L++ +GY FA++SLL+ ALTH S+      + ERLEFLGD I+  +I+  L+  F  A
Sbjct: 9   ERLQRALGYQFADKSLLQLALTHRSVG---GRNNERLEFLGDSIVNHIIAEALYRQFPDA 65

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +EG++S    SLV  +T ++VARELDL   + +    RK       SI AD +E++  A+
Sbjct: 66  REGDMSRMRASLVKGDTLAEVARELDLGEHLLLGPGERKSGGKRRGSILADGLEAVAGAI 125

Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
            +D  +    + V  ++++R   L      +DAKT LQE+   +    PEY++    G D
Sbjct: 126 LIDSDVAACRSCVLTWFRERLDLLSLDGADKDAKTLLQEYLQGRRSPLPEYELLGVVGED 185

Query: 185 HDPRFTVVVEISG-LAPAQGMDCSKRAAEQ 213
           H+ +F V   I+  +   +G   S+R AEQ
Sbjct: 186 HEQQFHVACRIAKPVLVVEGDGSSRRKAEQ 215


>gi|27066029|pdb|1O0W|A Chain A, Crystal Structure Of Ribonuclease Iii (Tm1102) From
           Thermotoga Maritima At 2.0 A Resolution
 gi|27066030|pdb|1O0W|B Chain B, Crystal Structure Of Ribonuclease Iii (Tm1102) From
           Thermotoga Maritima At 2.0 A Resolution
          Length = 252

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 114/228 (50%), Gaps = 11/228 (4%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-------ESYERLEFLGDRILGLLISTL 58
               +K  G  F N  LL +AL HSS ++          ES E+LEFLGD +L L +  +
Sbjct: 21  VEEFQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEI 80

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L+  +  A+ G+L+   ++  S E  + V+R+++L  F+ +     K       SI AD 
Sbjct: 81  LYKKYPEAEVGDLARVKSAAASEEVLAMVSRKMNLGKFLFLGKGEEKTGGRDRDSILADA 140

Query: 119 VESLIAALYLDGGIEVAGTFVDK---YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
            E+L+AA+YLD G E      ++   ++ ++ +K G+   D KT LQE   ++  V PEY
Sbjct: 141 FEALLAAIYLDQGYEKIKELFEQEFEFYIEKIMK-GEMLFDYKTALQEIVQSEHKVPPEY 199

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +      D D  F V V ++G   A G   +K+ AE+ AA    ++ 
Sbjct: 200 ILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEKL 247


>gi|268608881|ref|ZP_06142608.1| ribonuclease III [Ruminococcus flavefaciens FD-1]
          Length = 229

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 120/224 (53%), Gaps = 5/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFN 61
           +    E  IGY F N+ L+E+AL+HSS ++  +    S ERLEFLGD +L +++S  L+ 
Sbjct: 3   KTEEFENIIGYTFKNKELIEQALSHSSYANEKKRAGGSNERLEFLGDSVLSIVVSDYLYK 62

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +  +  EGEL+    SLV  ++    A++++L  F+ +             SI AD  E+
Sbjct: 63  NI-NVPEGELTKMRASLVCEKSLFVFAQQIELGEFLHLGKGEENTGGRERPSILADAFEA 121

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFR 180
           +IAA+YLDGG+E A   + ++  +   ++ K    D KT LQE          EY +   
Sbjct: 122 VIAAIYLDGGMEAAAKHILRFMPEDIKRTKKPVLSDFKTLLQEVVQKNPEEKVEYVLIGE 181

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            GPDH+ RF V V ++     +G   SK+ AEQ+AA E L+  G
Sbjct: 182 EGPDHNKRFVVEVCLNSQVIGKGKGKSKKEAEQLAAKEALELMG 225


>gi|258405510|ref|YP_003198252.1| ribonuclease III [Desulfohalobium retbaense DSM 5692]
 gi|257797737|gb|ACV68674.1| ribonuclease III [Desulfohalobium retbaense DSM 5692]
          Length = 237

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 113/228 (49%), Gaps = 7/228 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLIST 57
           M       +++R+ Y F ++ LL  ALTHSS ++ +   QE  ERLEFLGD +L L IS 
Sbjct: 1   MDDSVLRLVQQRLQYTFRDQQLLLLALTHSSYANEHPHIQEHNERLEFLGDAVLELAISE 60

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            L+  +  A EG L+   + LVS    + + R+L++A  + +             +I  D
Sbjct: 61  ELYLRYPEAPEGSLTSLRSKLVSEPALAALGRQLEIAPALFLGRGEESQGGRERDAILCD 120

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR----RDAKTELQEWAHAKFGVTP 173
           V+ES+  A++LD   + A T + + +  +   +        RD K+ LQE     F   P
Sbjct: 121 VMESIFGAIFLDSDYDRAKTCILELYVDKWPSAPSLGHERLRDFKSRLQECTQQLFKDRP 180

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            Y +   +GP+H   + V V++   + A   D S + AEQ AA + L+
Sbjct: 181 VYHLVDSTGPEHAKVYHVRVDLPNGSQASAADSSVKKAEQQAARKALE 228


>gi|291459099|ref|ZP_06598489.1| ribonuclease III [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291418353|gb|EFE92072.1| ribonuclease III [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 234

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 72/222 (32%), Positives = 114/222 (51%), Gaps = 6/222 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60
           R S LE+++ Y+F +R LL  ALTH S S+   +    S +RLEFLGD +L L  S  L+
Sbjct: 3   RLSLLEEKLAYSFRDRELLLHALTHPSYSNEQGDPKEASNQRLEFLGDAVLELAASDFLY 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           +     +EG ++    +LV   T ++ AR+L L  ++ +     ++      S+ +D  E
Sbjct: 63  HRVPVIQEGVMTKLRAALVCEPTLAEAARKLSLGDYLVLGRGEGREGIQLRDSVLSDAFE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           ++I A+YLDGG   A  F+ +      +++    RDAKT LQE+   +      Y +   
Sbjct: 123 AVIGAIYLDGGFSAAQCFIKRLVLS-DIENKSLYRDAKTMLQEYVSKQRLSL-RYALLEE 180

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           SGP H+  + V   I      +G   SK+ AEQ AA + L +
Sbjct: 181 SGPCHERFYRVSALIEEKEYGRGEGSSKKKAEQAAAYQALLK 222


>gi|329724352|gb|EGG60864.1| ribonuclease III [Staphylococcus epidermidis VCU144]
          Length = 249

 Score =  239 bits (612), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 65/222 (29%), Positives = 103/222 (46%), Gaps = 5/222 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           +++   K +G  F N  L ++A +HSS  + +     E  ERLEFLGD +L L +S  LF
Sbjct: 16  KFTDKMKSLGLHFKNIDLYQQAFSHSSFINDFNMNRLEHNERLEFLGDAVLELTVSRYLF 75

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           +      EG L+    ++V   +    A ++ L   I +     K       S+ +D  E
Sbjct: 76  DRHPHLPEGNLTKMRATIVCEPSLVIFANKIKLNELILLGKGEEKTGGRTRPSLISDAFE 135

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTF 179
           + + ALYLD G++   TF +K               D KT+ QE+ H++      Y++  
Sbjct: 136 AFVGALYLDQGLDSVWTFAEKVIFPYVEDDELVGVVDFKTQFQEYVHSQNKGDVTYQLIK 195

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             GP H   FT  V +   A A+G   +K+ +EQ AA +  K
Sbjct: 196 EEGPAHHRLFTSEVILENKAVAEGKGKTKKESEQKAAEQAYK 237


>gi|317484890|ref|ZP_07943780.1| ribonuclease III [Bilophila wadsworthia 3_1_6]
 gi|316923872|gb|EFV45068.1| ribonuclease III [Bilophila wadsworthia 3_1_6]
          Length = 233

 Score =  239 bits (612), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 115/226 (50%), Gaps = 5/226 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLF 60
           +    L+ RIGY F + SLL  A+THSS ++ +       ERLEFLGD +L + +S  LF
Sbjct: 1   MTLDVLQDRIGYRFKDESLLVLAVTHSSWANEHSAGNAHNERLEFLGDAVLEIAVSAQLF 60

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A+EGEL+   +SLV+  T + +AR+L L   +R++            S+ +D +E
Sbjct: 61  ARFPDAREGELTRLRSSLVNEATLAVIARKLHLDDCLRLARGEENQGGRQRDSLLSDAME 120

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++   +++DGGIE A   V++ +     K+     R+D KT+LQE         P Y + 
Sbjct: 121 AVFGGVFVDGGIEKARAVVERLYTDLWPKNATKVRRKDFKTKLQEATQRISKGLPVYALE 180

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              GP+H   F+V V++      +      + AEQ AA   L   G
Sbjct: 181 DSYGPEHAKIFSVRVDLPDGRQFRASGPGLKRAEQEAAHVALVALG 226


>gi|160915457|ref|ZP_02077668.1| hypothetical protein EUBDOL_01465 [Eubacterium dolichum DSM 3991]
 gi|158432577|gb|EDP10866.1| hypothetical protein EUBDOL_01465 [Eubacterium dolichum DSM 3991]
          Length = 227

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 112/227 (49%), Gaps = 6/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLIST 57
           M  + +  L++R G    N+  + +ALTHSS  + ++      ERLEF+GD +L L  + 
Sbjct: 1   MDTI-FEWLKQR-GIQIENKERMVEALTHSSYVNEHKASKHDNERLEFMGDAVLQLWSTR 58

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF+   +  EG+++     LV  E  +   R L    ++ +     K       S+ AD
Sbjct: 59  KLFHLTPALSEGQMTTLRAQLVCEEALAAYNRTLGWGKYLLLGVGEEKTGGRNRDSLLAD 118

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYK 176
           + E+++ A+YLD G+E     ++        +   +   D KT+LQE+  A       Y+
Sbjct: 119 MFEAVLGAIYLDQGMEAVDIILESVLTPAITQPKSESVIDYKTKLQEYIQADTRKNVHYE 178

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +   SGP + P F V+V++  +   +G+  SK+ AEQ+AA +  ++ 
Sbjct: 179 LVSTSGPSNAPIFEVIVKLEDIIMGKGVGNSKKRAEQMAAKDAFEKM 225


>gi|116620923|ref|YP_823079.1| RNAse III [Candidatus Solibacter usitatus Ellin6076]
 gi|122255019|sp|Q027L3|RNC_SOLUE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|116224085|gb|ABJ82794.1| RNAse III [Candidatus Solibacter usitatus Ellin6076]
          Length = 271

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 75/232 (32%), Positives = 111/232 (47%), Gaps = 17/232 (7%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE---------SYERLEFLGDRILGLLISTLL 59
           LE ++ Y F +  LL +ALTHSS+++  +            E+LEFLGD +LG LI+  L
Sbjct: 8   LELKLDYRFNDPELLRRALTHSSLANENRPGAGVGSPLNDNEQLEFLGDSVLGFLIAEAL 67

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
              F    EG+LS     LVSA     VAR LDL S++ +             ++  D +
Sbjct: 68  VRRFPEYHEGDLSRLKAHLVSAAHLHGVARRLDLGSYLELGRSEEMSGGRTKKTLLVDGL 127

Query: 120 ESLIAALYLDGGIEVAGTFVDKYW--------KQRALKSGKFRRDAKTELQEWAHAKFGV 171
           E+++AA+YLDGG++ A  FV  +         ++          + K+ LQE A  +   
Sbjct: 128 EAIMAAIYLDGGVDAARAFVATHVLDAPFFGDEEAGTDIQPAITNFKSALQELAQTRRLP 187

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            P Y V    GP+H   FTV V +     AQ    +K+ A Q AA  + +R 
Sbjct: 188 QPRYSVVRERGPEHSKTFTVEVRVGKEWTAQAEGRTKKIAAQRAARGLYERL 239


>gi|104783263|ref|YP_609761.1| ribonuclease III [Pseudomonas entomophila L48]
 gi|122402118|sp|Q1I5V8|RNC_PSEE4 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|95112250|emb|CAK16977.1| ribonuclease III, ds RNA [Pseudomonas entomophila L48]
          Length = 229

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 76/216 (35%), Positives = 109/216 (50%), Gaps = 7/216 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           MSA     LE+++GY F N+  +  ALTH S +     + ERLEFLGD IL  ++   LF
Sbjct: 1   MSA-SLDRLERKLGYTFKNQDQMLLALTHRSYA---GRNNERLEFLGDAILNFVVGEALF 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A+EG+LS     LV  ET +++AR  DL  ++R+ S   K       SI AD +E
Sbjct: 57  ERFPQAREGQLSRLRARLVKGETLARLARGFDLGDYLRLGSGELKSGGFRRESILADALE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI A+Y D  ++ A   +  +       L      +D KT LQE+  ++    P Y+V 
Sbjct: 117 ALIGAIYQDADMQTARERILAWLTDEFDGLTLVDTNKDPKTRLQEFLQSRACELPRYEVV 176

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213
              G  H   F V  E+  L   ++G   S+R AEQ
Sbjct: 177 DIQGEPHCRTFFVECEVVLLNKKSRGQGVSRRIAEQ 212


>gi|194366747|ref|YP_002029357.1| ribonuclease III [Stenotrophomonas maltophilia R551-3]
 gi|194349551|gb|ACF52674.1| Ribonuclease III [Stenotrophomonas maltophilia R551-3]
          Length = 226

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 74/217 (34%), Positives = 113/217 (52%), Gaps = 7/217 (3%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
             IG+AF++ +LL++ALTH S    +    ERLEFLGD I+ ++ +  L+  +  A EG 
Sbjct: 10  DLIGHAFSDPALLKQALTHRSAGAPH---NERLEFLGDSIVNMMAAEALYRRWPKADEGA 66

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           ++     LV     + + R L+L   + +     K       SI AD VE+++AA+YLD 
Sbjct: 67  MTRARAELVREGALAVIGRTLELGERLTLGPGEMKSGGHRRDSILADAVEAVVAAIYLDA 126

Query: 131 GIEVAGTFVDKYW---KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           G E     V  ++    +    SG+  +D KT LQEW  A+    P+Y++   SG DH  
Sbjct: 127 GFEACRAVVLPWFSASIEALPASGRPEKDPKTRLQEWLQARQKALPQYELVSESGDDHAK 186

Query: 188 RFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
            F V   ++   A  +G   S+R AEQ AAA VL++ 
Sbjct: 187 HFRVRCIVADPAASTEGEGASRRLAEQQAAAAVLEQL 223


>gi|304392070|ref|ZP_07374012.1| ribonuclease III [Ahrensia sp. R2A130]
 gi|303296299|gb|EFL90657.1| ribonuclease III [Ahrensia sp. R2A130]
          Length = 244

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 114/227 (50%), Positives = 154/227 (67%), Gaps = 2/227 (0%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLL 59
           S  R + LE+ IGY FA+   L++ALTH+S +    ++  YERLEFLGDR+LG+ I+ +L
Sbjct: 6   STNRIAELEELIGYTFASHDRLKRALTHASATRKPGDNSHYERLEFLGDRVLGVCIAEML 65

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F  F +A EGELSVR N+LVS +TC+ +A E+ L +FI   +D++      M S++ADVV
Sbjct: 66  FETFPTAPEGELSVRLNALVSGKTCAAIADEIGLHAFITTGNDVKHVTGKRMRSVRADVV 125

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           ES+IAA+YLDGG+E A  F+ +YW  R  ++G   RD+KT LQEWAH   G TP Y +  
Sbjct: 126 ESVIAAIYLDGGLEPARDFITRYWAGRLHETGAGIRDSKTALQEWAHTHSGETPVYTLVE 185

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           ++GPDHDP F + V I G++   G   SKRAAEQ AA  VL REG+W
Sbjct: 186 KTGPDHDPLFKISVAIHGVSGGNGAGRSKRAAEQAAARAVLLREGVW 232


>gi|227543196|ref|ZP_03973245.1| ribonuclease III [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227181005|gb|EEI61977.1| ribonuclease III [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 250

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 70/220 (31%), Positives = 110/220 (50%), Gaps = 6/220 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61
           + ++ L +++G   +   LL  ALTH S ++      + ERLEFLGD +LG  ++  LF 
Sbjct: 20  VDHAPLLEKLGTTVS-PELLRLALTHRSFANENGGLPNNERLEFLGDSVLGCSVAWKLFE 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + S+ E  +S     +VS    + +ARE+ L  +I +             SI AD  E+
Sbjct: 79  TYPSSPESVISKMRARIVSRFGLADIAREIGLGKYILLGRGEILTDGREKDSILADTTEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           L  A++L+ G E A   +   + ++ + +       D KT LQE A  +    PEY+ +F
Sbjct: 139 LFGAIFLEHGFETARHTILTLFHEKIVHASSDSIHTDWKTLLQERAAERKLPMPEYEASF 198

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            +GPDHD  FT    I G     G   +K+AAEQ+AA + 
Sbjct: 199 -TGPDHDRFFTATAIIDGKVVGTGQGHNKKAAEQLAAKQA 237


>gi|82750837|ref|YP_416578.1| ribonuclease III [Staphylococcus aureus RF122]
 gi|90101646|sp|Q2YXI3|RNC_STAAB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|82656368|emb|CAI80786.1| Ribonuclease III [Staphylococcus aureus RF122]
          Length = 243

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 106/224 (47%), Gaps = 5/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           R+ T    +G+ + N  L ++A +HSS  + +     +  ERLEFLGD +L L +S  LF
Sbjct: 16  RFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLF 75

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           +   +  EG L+    ++V   +    A ++ L   I +     K       S+ +DV E
Sbjct: 76  DKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLISDVFE 135

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTF 179
           + I ALYLD G+++   F +K       ++      D KT+ QE+ H +      Y +  
Sbjct: 136 AFIGALYLDQGLDIVWKFAEKVIFPHVEQNELLGVVDFKTQFQEYVHQQNKGDVTYNLIK 195

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             GP H   FT  V + G A A+G   +K+ +EQ AA    K+ 
Sbjct: 196 EEGPAHHRLFTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQL 239


>gi|259503531|ref|ZP_05746433.1| ribonuclease III [Lactobacillus antri DSM 16041]
 gi|259168609|gb|EEW53104.1| ribonuclease III [Lactobacillus antri DSM 16041]
          Length = 232

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 104/229 (45%), Gaps = 7/229 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLIS 56
           M       L K     F++  LL +A T +S  + +       YER+EFLGD +L L++S
Sbjct: 1   MIEELQDYLAKEFDIHFSDPRLLAEAFTQASYVNEHPNQNLKFYERIEFLGDAVLELIVS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             ++  +    +G L+    ++V  ++ S+ A+E     +IR+              +  
Sbjct: 61  EYIYKRYPELPQGRLTRLRAAMVCEDSFSKFAKECHFDQYIRLGHGEELAGARQRPGLLC 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D+ ES + ALYLD G      FV +    + L  G F    DAKT LQE+      V  E
Sbjct: 121 DIFESFVGALYLDQGRPAVEKFVQRVIFPK-LDMGWFDHAVDAKTSLQEFLQRDGDVLIE 179

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           Y +   SG +++P F V V   G   A G   SK+ AE  AA   LK+ 
Sbjct: 180 YHLLEESGTENNPAFHVDVAADGQVIADGQGSSKKQAEMQAAQRALKKL 228


>gi|15926816|ref|NP_374349.1| ribonuclease III [Staphylococcus aureus subsp. aureus N315]
 gi|21282845|ref|NP_645933.1| ribonuclease III [Staphylococcus aureus subsp. aureus MW2]
 gi|49483396|ref|YP_040620.1| ribonuclease III [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49486072|ref|YP_043293.1| ribonuclease III [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57651802|ref|YP_186108.1| ribonuclease III [Staphylococcus aureus subsp. aureus COL]
 gi|87160069|ref|YP_493823.1| ribonuclease III [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88194940|ref|YP_499740.1| ribonuclease III [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|148267724|ref|YP_001246667.1| ribonuclease III [Staphylococcus aureus subsp. aureus JH9]
 gi|150393782|ref|YP_001316457.1| ribonuclease III [Staphylococcus aureus subsp. aureus JH1]
 gi|151221355|ref|YP_001332177.1| ribonuclease III [Staphylococcus aureus subsp. aureus str. Newman]
 gi|161509405|ref|YP_001575064.1| ribonuclease III [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142023|ref|ZP_03566516.1| ribonuclease III [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|253315591|ref|ZP_04838804.1| ribonuclease III [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|253731850|ref|ZP_04866015.1| RNase III [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253733529|ref|ZP_04867694.1| RNase III [Staphylococcus aureus subsp. aureus TCH130]
 gi|257425287|ref|ZP_05601712.1| ribonuclease III [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257427947|ref|ZP_05604345.1| ribonuclease III [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257430580|ref|ZP_05606962.1| ribonuclease III [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433341|ref|ZP_05609699.1| ribonuclease III [Staphylococcus aureus subsp. aureus E1410]
 gi|257436183|ref|ZP_05612230.1| ribonuclease III [Staphylococcus aureus subsp. aureus M876]
 gi|257795711|ref|ZP_05644690.1| ribonuclease III [Staphylococcus aureus A9781]
 gi|258415935|ref|ZP_05682205.1| ribonuclease III [Staphylococcus aureus A9763]
 gi|258419682|ref|ZP_05682649.1| ribonuclease III [Staphylococcus aureus A9719]
 gi|258423926|ref|ZP_05686811.1| ribonuclease III [Staphylococcus aureus A9635]
 gi|258434853|ref|ZP_05688927.1| ribonuclease III [Staphylococcus aureus A9299]
 gi|258444571|ref|ZP_05692900.1| ribonuclease III [Staphylococcus aureus A8115]
 gi|258447596|ref|ZP_05695740.1| ribonuclease III [Staphylococcus aureus A6300]
 gi|258449438|ref|ZP_05697541.1| ribonuclease III [Staphylococcus aureus A6224]
 gi|258454817|ref|ZP_05702781.1| ribonuclease III [Staphylococcus aureus A5937]
 gi|262048131|ref|ZP_06021018.1| RNase III [Staphylococcus aureus D30]
 gi|262051862|ref|ZP_06024078.1| RNase III [Staphylococcus aureus 930918-3]
 gi|269202849|ref|YP_003282118.1| ribonuclease III [Staphylococcus aureus subsp. aureus ED98]
 gi|282892720|ref|ZP_06300955.1| ribonuclease III [Staphylococcus aureus A8117]
 gi|282903787|ref|ZP_06311675.1| ribonuclease III [Staphylococcus aureus subsp. aureus C160]
 gi|282905551|ref|ZP_06313406.1| ribonuclease III [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282908526|ref|ZP_06316356.1| ribonuclease III [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282910805|ref|ZP_06318608.1| ribonuclease III [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914009|ref|ZP_06321796.1| ribonuclease III [Staphylococcus aureus subsp. aureus M899]
 gi|282916483|ref|ZP_06324245.1| ribonuclease III [Staphylococcus aureus subsp. aureus D139]
 gi|282918931|ref|ZP_06326666.1| ribonuclease III [Staphylococcus aureus subsp. aureus C427]
 gi|282920016|ref|ZP_06327745.1| ribonuclease III [Staphylococcus aureus A9765]
 gi|282924054|ref|ZP_06331730.1| ribonuclease III [Staphylococcus aureus subsp. aureus C101]
 gi|282927574|ref|ZP_06335190.1| ribonuclease III [Staphylococcus aureus A10102]
 gi|283770295|ref|ZP_06343187.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus H19]
 gi|283957975|ref|ZP_06375426.1| ribonuclease III [Staphylococcus aureus subsp. aureus A017934/97]
 gi|284024157|ref|ZP_06378555.1| ribonuclease III [Staphylococcus aureus subsp. aureus 132]
 gi|293501041|ref|ZP_06666892.1| ribonuclease III [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510001|ref|ZP_06668709.1| ribonuclease III [Staphylococcus aureus subsp. aureus M809]
 gi|293526589|ref|ZP_06671274.1| ribonuclease III [Staphylococcus aureus subsp. aureus M1015]
 gi|294848227|ref|ZP_06788974.1| ribonuclease III [Staphylococcus aureus A9754]
 gi|295407172|ref|ZP_06816973.1| ribonuclease III [Staphylococcus aureus A8819]
 gi|295427719|ref|ZP_06820351.1| ribonuclease III [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296274790|ref|ZP_06857297.1| ribonuclease III [Staphylococcus aureus subsp. aureus MR1]
 gi|297208123|ref|ZP_06924554.1| ribonuclease III [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297245941|ref|ZP_06929800.1| ribonuclease III [Staphylococcus aureus A8796]
 gi|297591322|ref|ZP_06949960.1| ribonuclease III [Staphylococcus aureus subsp. aureus MN8]
 gi|300912203|ref|ZP_07129646.1| ribonuclease III [Staphylococcus aureus subsp. aureus TCH70]
 gi|304381203|ref|ZP_07363856.1| ribonuclease III [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|54039243|sp|P66669|RNC_STAAW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|54041615|sp|P66668|RNC_STAAN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|56749389|sp|Q6G9Y0|RNC_STAAS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|56749418|sp|Q6GHK2|RNC_STAAR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|73917582|sp|Q5HGJ9|RNC_STAAC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|122539710|sp|Q2FZ50|RNC_STAA8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|123486215|sp|Q2FHK5|RNC_STAA3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043358|sp|A6U152|RNC_STAA2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043359|sp|A5ISB8|RNC_STAA9 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043360|sp|A6QGD3|RNC_STAAE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043361|sp|A8Z3R9|RNC_STAAT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|13701033|dbj|BAB42328.1| RNase III [Staphylococcus aureus subsp. aureus N315]
 gi|21204284|dbj|BAB94981.1| RNase III [Staphylococcus aureus subsp. aureus MW2]
 gi|49241525|emb|CAG40211.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49244515|emb|CAG42944.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57285988|gb|AAW38082.1| ribonuclease III [Staphylococcus aureus subsp. aureus COL]
 gi|87126043|gb|ABD20557.1| ribonuclease III [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202498|gb|ABD30308.1| ribonuclease III, putative [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|147740793|gb|ABQ49091.1| RNAse III [Staphylococcus aureus subsp. aureus JH9]
 gi|149946234|gb|ABR52170.1| Ribonuclease III [Staphylococcus aureus subsp. aureus JH1]
 gi|150374155|dbj|BAF67415.1| ribonuclease III [Staphylococcus aureus subsp. aureus str. Newman]
 gi|160368214|gb|ABX29185.1| ribonuclease III [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253724449|gb|EES93178.1| RNase III [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253728583|gb|EES97312.1| RNase III [Staphylococcus aureus subsp. aureus TCH130]
 gi|257271744|gb|EEV03882.1| ribonuclease III [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257274788|gb|EEV06275.1| ribonuclease III [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278708|gb|EEV09327.1| ribonuclease III [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281434|gb|EEV11571.1| ribonuclease III [Staphylococcus aureus subsp. aureus E1410]
 gi|257284465|gb|EEV14585.1| ribonuclease III [Staphylococcus aureus subsp. aureus M876]
 gi|257789683|gb|EEV28023.1| ribonuclease III [Staphylococcus aureus A9781]
 gi|257839271|gb|EEV63745.1| ribonuclease III [Staphylococcus aureus A9763]
 gi|257844267|gb|EEV68649.1| ribonuclease III [Staphylococcus aureus A9719]
 gi|257845955|gb|EEV69984.1| ribonuclease III [Staphylococcus aureus A9635]
 gi|257849214|gb|EEV73196.1| ribonuclease III [Staphylococcus aureus A9299]
 gi|257850064|gb|EEV74017.1| ribonuclease III [Staphylococcus aureus A8115]
 gi|257853787|gb|EEV76746.1| ribonuclease III [Staphylococcus aureus A6300]
 gi|257857426|gb|EEV80324.1| ribonuclease III [Staphylococcus aureus A6224]
 gi|257863200|gb|EEV85964.1| ribonuclease III [Staphylococcus aureus A5937]
 gi|259160263|gb|EEW45291.1| RNase III [Staphylococcus aureus 930918-3]
 gi|259163697|gb|EEW48252.1| RNase III [Staphylococcus aureus D30]
 gi|262075139|gb|ACY11112.1| ribonuclease III [Staphylococcus aureus subsp. aureus ED98]
 gi|269940725|emb|CBI49106.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282314026|gb|EFB44418.1| ribonuclease III [Staphylococcus aureus subsp. aureus C101]
 gi|282316741|gb|EFB47115.1| ribonuclease III [Staphylococcus aureus subsp. aureus C427]
 gi|282319923|gb|EFB50271.1| ribonuclease III [Staphylococcus aureus subsp. aureus D139]
 gi|282322077|gb|EFB52401.1| ribonuclease III [Staphylococcus aureus subsp. aureus M899]
 gi|282325410|gb|EFB55719.1| ribonuclease III [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327588|gb|EFB57871.1| ribonuclease III [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282330843|gb|EFB60357.1| ribonuclease III [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282590577|gb|EFB95654.1| ribonuclease III [Staphylococcus aureus A10102]
 gi|282594732|gb|EFB99716.1| ribonuclease III [Staphylococcus aureus A9765]
 gi|282595405|gb|EFC00369.1| ribonuclease III [Staphylococcus aureus subsp. aureus C160]
 gi|282764717|gb|EFC04842.1| ribonuclease III [Staphylococcus aureus A8117]
 gi|283460442|gb|EFC07532.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus H19]
 gi|283470446|emb|CAQ49657.1| ribonuclease III [Staphylococcus aureus subsp. aureus ST398]
 gi|283790124|gb|EFC28941.1| ribonuclease III [Staphylococcus aureus subsp. aureus A017934/97]
 gi|285816915|gb|ADC37402.1| Ribonuclease III [Staphylococcus aureus 04-02981]
 gi|290920661|gb|EFD97724.1| ribonuclease III [Staphylococcus aureus subsp. aureus M1015]
 gi|291096046|gb|EFE26307.1| ribonuclease III [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466945|gb|EFF09463.1| ribonuclease III [Staphylococcus aureus subsp. aureus M809]
 gi|294825027|gb|EFG41449.1| ribonuclease III [Staphylococcus aureus A9754]
 gi|294968025|gb|EFG44053.1| ribonuclease III [Staphylococcus aureus A8819]
 gi|295128077|gb|EFG57711.1| ribonuclease III [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296887366|gb|EFH26268.1| ribonuclease III [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297177105|gb|EFH36359.1| ribonuclease III [Staphylococcus aureus A8796]
 gi|297576208|gb|EFH94924.1| ribonuclease III [Staphylococcus aureus subsp. aureus MN8]
 gi|298694526|gb|ADI97748.1| Ribonuclease III [Staphylococcus aureus subsp. aureus ED133]
 gi|300886449|gb|EFK81651.1| ribonuclease III [Staphylococcus aureus subsp. aureus TCH70]
 gi|302332837|gb|ADL23030.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|302751056|gb|ADL65233.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus str.
           JKD6008]
 gi|304340186|gb|EFM06127.1| ribonuclease III [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|312438389|gb|ADQ77460.1| ribonuclease III [Staphylococcus aureus subsp. aureus TCH60]
 gi|312829627|emb|CBX34469.1| ribonuclease III [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315131026|gb|EFT87010.1| ribonuclease III [Staphylococcus aureus subsp. aureus CGS03]
 gi|315194121|gb|EFU24514.1| ribonuclease III [Staphylococcus aureus subsp. aureus CGS00]
 gi|315198472|gb|EFU28801.1| ribonuclease III [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140951|gb|EFW32798.1| ribonuclease III [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320144334|gb|EFW36100.1| ribonuclease III [Staphylococcus aureus subsp. aureus MRSA177]
 gi|323441008|gb|EGA98715.1| ribonuclease III [Staphylococcus aureus O11]
 gi|323442325|gb|EGA99955.1| ribonuclease III [Staphylococcus aureus O46]
 gi|329313902|gb|AEB88315.1| Ribonuclease 3 [Staphylococcus aureus subsp. aureus T0131]
 gi|329724757|gb|EGG61262.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21189]
 gi|329727692|gb|EGG64148.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21172]
 gi|329733624|gb|EGG69952.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21193]
          Length = 243

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 65/224 (29%), Positives = 105/224 (46%), Gaps = 5/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           R+ T    +G+ + N  L ++A +HSS  + +     +  ERLEFLGD +L L +S  LF
Sbjct: 16  RFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLF 75

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           +   +  EG L+    ++V   +    A ++ L   I +     K       S+ +D  E
Sbjct: 76  DKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLISDAFE 135

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTF 179
           + I ALYLD G+++   F +K       ++      D KT+ QE+ H +      Y +  
Sbjct: 136 AFIGALYLDQGLDIVWKFAEKVIFPHVEQNELLGVVDFKTQFQEYVHQQNKGDVTYNLIK 195

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             GP H   FT  V + G A A+G   +K+ +EQ AA    K+ 
Sbjct: 196 EEGPAHHRLFTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQL 239


>gi|328955642|ref|YP_004372975.1| RNAse III [Coriobacterium glomerans PW2]
 gi|328455966|gb|AEB07160.1| RNAse III [Coriobacterium glomerans PW2]
          Length = 241

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 84/225 (37%), Positives = 113/225 (50%), Gaps = 3/225 (1%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLF 60
           + +    E+   + FA+R LL  ALTH S         SYERLEFLGD ILG +++  LF
Sbjct: 4   SEKLRAAEQICHHRFADRQLLRCALTHPSAVEGQPVCASYERLEFLGDSILGAIVAVALF 63

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N + S  EG L+    SLVS    S V  EL +   I   +         M S   +V E
Sbjct: 64  NSYPSIDEGRLTRLKVSLVSGAMLSDVGLELGIDRCIIFGASETGTGARGMHSALENVYE 123

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTF 179
           SL+AA+YLDGG +VA  F+ +  +            + K+ LQE      G  P YK+  
Sbjct: 124 SLVAAMYLDGGWDVAEAFILRTLEPHLADDRPESVSNPKSILQERVQEDHGEPPCYKLVG 183

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            SGP H+P FT VV + G+   +G   SK+ AE  AA + L+R G
Sbjct: 184 MSGPAHEPTFTAVVLVDGVRCGRGTGSSKKEAEASAARDALERMG 228


>gi|293366802|ref|ZP_06613478.1| ribonuclease III [Staphylococcus epidermidis M23864:W2(grey)]
 gi|291319103|gb|EFE59473.1| ribonuclease III [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329736553|gb|EGG72819.1| ribonuclease III [Staphylococcus epidermidis VCU045]
          Length = 245

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 65/222 (29%), Positives = 103/222 (46%), Gaps = 5/222 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           +++   K +G  F N  L ++A +HSS  + +     E  ERLEFLGD +L L +S  LF
Sbjct: 16  KFTDKMKSLGLHFKNIDLYQQAFSHSSFINDFNMNRLEHNERLEFLGDAVLELTVSRYLF 75

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           +      EG L+    ++V   +    A ++ L   I +     K       S+ +D  E
Sbjct: 76  DRHPHLPEGNLTKMRATIVCEPSLVIFANKIKLNELILLGKGEEKTGGRTRPSLISDAFE 135

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTF 179
           + + ALYLD G++   TF +K               D KT+ QE+ H++      Y++  
Sbjct: 136 AFVGALYLDQGLDSVWTFAEKVIFPYVEDDELVGVVDFKTQFQEYVHSQNKGDVTYQLIK 195

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             GP H   FT  V +   A A+G   +K+ +EQ AA +  K
Sbjct: 196 EEGPAHHRLFTSEVILENKAVAEGKGKTKKESEQKAAEQAYK 237


>gi|297559194|ref|YP_003678168.1| ribonuclease III [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296843642|gb|ADH65662.1| ribonuclease III [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 248

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 74/219 (33%), Positives = 110/219 (50%), Gaps = 6/219 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
               + IG    +  +L +ALTH S ++      + ERLEFLGD +LGL+++  LF    
Sbjct: 11  KAFHQAIGVE-VDPKILLRALTHRSYAYEKGGLPTNERLEFLGDSVLGLVVTDTLFRKHP 69

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+L+    ++V+    + VAR L + ++IR+            +SI AD +E++I 
Sbjct: 70  DLPEGQLAKLRAAVVNMRALADVARGLGVGAYIRLGRGEEGTGGRDKSSILADTLEAVIG 129

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YLD G++VA  FV + +      +       D KT LQE   A+    PEY V   SG
Sbjct: 130 AVYLDRGLDVASEFVHRLFDPLIATASGLGAGLDWKTSLQELTAAEMLGVPEYHV-DESG 188

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           PDH   F   V ++G +   G   SK+ AEQ AA    K
Sbjct: 189 PDHQKTFRATVRVAGESYGLGEGRSKKEAEQQAAESAWK 227


>gi|227495870|ref|ZP_03926181.1| ribonuclease III [Actinomyces urogenitalis DSM 15434]
 gi|226834547|gb|EEH66930.1| ribonuclease III [Actinomyces urogenitalis DSM 15434]
          Length = 276

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 73/219 (33%), Positives = 102/219 (46%), Gaps = 6/219 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH 62
              +L  R G    +  LL+ ALTH S +H      + ERLEFLGD +L ++++  LF  
Sbjct: 19  DLESLVYRWGCQIEDP-LLDLALTHRSWAHENGGLPTNERLEFLGDAVLQIIVTEDLFRD 77

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
                EG+L+    + VS    + VAR+L L  FI++             SI +D VE+L
Sbjct: 78  HPEVPEGQLAKMRAATVSEPALAGVARDLGLGEFIKLGKGEALSGGRDKDSILSDTVEAL 137

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           I A YL  G+E     V +   +   ++       D KT LQE A      +P Y+VT  
Sbjct: 138 IGATYLTVGLEPVREVVLRLVSRFLTEAPSRGAGLDWKTSLQELAAVHRLGSPSYRVTSV 197

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            GPDH   FT V  + G    +G   SK+ AE  AA   
Sbjct: 198 -GPDHARVFTAVAVVDGQERGEGTGSSKKVAEHDAAEAA 235


>gi|125624543|ref|YP_001033026.1| ribonuclease III [Lactococcus lactis subsp. cremoris MG1363]
 gi|189043323|sp|A2RLZ8|RNC_LACLM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|124493351|emb|CAL98325.1| ribonuclease III [Lactococcus lactis subsp. cremoris MG1363]
 gi|300071337|gb|ADJ60737.1| ribonuclease III [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 231

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 104/223 (46%), Gaps = 9/223 (4%)

Query: 8   TLEKRI----GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59
            L+K++    G  F +  LL+ A THSS ++  +     + ERLEFLGD  L L+IS  L
Sbjct: 3   KLQKKLKNDYGLVFNDEYLLKTAFTHSSFTNEERLPKIANNERLEFLGDVALSLVISDYL 62

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  +    EGELS   +S+V  E+ +  +R      F+R+     K       +   ++ 
Sbjct: 63  YRTYPEKLEGELSKMRSSIVRTESLANFSRSCGFGEFLRLGHGEEKMGGRDRETTLENLF 122

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVT 178
           E+ + AL++D G++    F+              +  D KTELQE        T  YK+ 
Sbjct: 123 EAFLGALFIDQGMDEVRKFIQHVVIPHVKNDDYVKVIDYKTELQEVLQIGGETTISYKIL 182

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              GP HD  F   V  +G    +G+  SK+ AEQ AA   +K
Sbjct: 183 KEEGPAHDRSFVAAVFNNGKELGRGLGKSKKVAEQKAAENAIK 225


>gi|27467826|ref|NP_764463.1| RNase III [Staphylococcus epidermidis ATCC 12228]
 gi|251810663|ref|ZP_04825136.1| RNase III [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876335|ref|ZP_06285202.1| ribonuclease III [Staphylococcus epidermidis SK135]
 gi|32129970|sp|Q8CPI1|RNC_STAES RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|27315371|gb|AAO04505.1|AE016747_2 RNase III [Staphylococcus epidermidis ATCC 12228]
 gi|251805823|gb|EES58480.1| RNase III [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295360|gb|EFA87887.1| ribonuclease III [Staphylococcus epidermidis SK135]
 gi|329736334|gb|EGG72606.1| ribonuclease III [Staphylococcus epidermidis VCU028]
          Length = 245

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 65/222 (29%), Positives = 103/222 (46%), Gaps = 5/222 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           +++   K +G  F N  L ++A +HSS  + +     E  ERLEFLGD +L L +S  LF
Sbjct: 16  KFTDKMKSLGLHFKNIDLYQQAFSHSSFINDFNMNRLEHNERLEFLGDAVLELTVSRYLF 75

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           +      EG L+    ++V   +    A ++ L   I +     K       S+ +D  E
Sbjct: 76  DRHPHLPEGNLTKMRATIVCEPSLVIFANKIKLNELILLGKGEEKTGGRTRPSLISDAFE 135

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTF 179
           + + ALYLD G++   TF +K               D KT+ QE+ H++      Y++  
Sbjct: 136 AFVGALYLDQGLDSVWTFAEKVIFPYVEDDELVGVVDFKTQFQEYVHSQNKGDVTYQLIK 195

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             GP H   FT  V +   A A+G   +K+ +EQ AA +  K
Sbjct: 196 EEGPAHHRLFTSEVILENKAVAEGKGKTKKESEQKAAEQAYK 237


>gi|302878420|ref|YP_003846984.1| ribonuclease III [Gallionella capsiferriformans ES-2]
 gi|302581209|gb|ADL55220.1| ribonuclease III [Gallionella capsiferriformans ES-2]
          Length = 229

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 74/222 (33%), Positives = 110/222 (49%), Gaps = 6/222 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y+ L +++GY F    LL++ALTH S +    +  ERLEFLGD ILG +I+  L++    
Sbjct: 7   YTELCRQLGYVFIQPQLLQRALTHRSFA---PDHNERLEFLGDSILGCVIAKHLYSQHPD 63

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS   ++LV   T    A++L+L + +++     K       SI AD VE+L  A
Sbjct: 64  LTEGDLSRLRSNLVKESTLVLFAQQLNLGAQLKLGEGELKSGGHKRPSILADAVEALFGA 123

Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +++DGG   A   V   +      +      +DAKT LQE+   +  + P Y V    G 
Sbjct: 124 IFIDGGYVAAEAAVLNLFVPYLAKVDMKTLGKDAKTLLQEYLQGRRQLLPVYSVVDTLGV 183

Query: 184 DHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKREG 224
            H+  F V   I  L  +  G   S+R AEQ AA    +  G
Sbjct: 184 AHEQLFQVECTIPSLKISTRGAGTSRRNAEQQAALAAYQLIG 225


>gi|70726682|ref|YP_253596.1| ribonuclease III [Staphylococcus haemolyticus JCSC1435]
 gi|90101647|sp|Q4L5T5|RNC_STAHJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|68447406|dbj|BAE04990.1| ribonuclease III [Staphylococcus haemolyticus JCSC1435]
          Length = 245

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 61/216 (28%), Positives = 99/216 (45%), Gaps = 5/216 (2%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +G+ ++N  L ++A +HSS  + +        ERLEFLGD +L L +S  LF+      E
Sbjct: 24  LGFTYSNIDLYQQAFSHSSFINDFNMDRLAHNERLEFLGDAVLELTVSRYLFDKHPDLPE 83

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G L+    ++V   +    A +++L   I +     K       S+ +D  E+ + ALYL
Sbjct: 84  GNLTKMRATIVCEPSLVIFANKIELNQLILLGKGEEKTGGRTRPSLVSDAFEAFVGALYL 143

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           D G++V   F +K               D KT+ QE+ H++      Y++    GP H  
Sbjct: 144 DQGLDVVWQFAEKVIFPYVEDDELVGVVDFKTQFQEYVHSQNRGDVTYRLIKEEGPAHHR 203

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            FT  V +   A A G   +K+ +EQ AA     + 
Sbjct: 204 LFTSEVILENEAVATGQGKTKKESEQKAAESAYSKL 239


>gi|254499135|ref|ZP_05111825.1| ribonuclease III [Legionella drancourtii LLAP12]
 gi|254351674|gb|EET10519.1| ribonuclease III [Legionella drancourtii LLAP12]
          Length = 228

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 117/224 (52%), Gaps = 6/224 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            +    L +RI Y F   + L++ALTH S+     E+YER EFLGD IL  +I+  LF+ 
Sbjct: 2   KIDLERLCRRIDYHFEKPAFLKQALTHCSVG---SENYERFEFLGDSILSFVIANELFHR 58

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F S  EG LS   + LV  +   ++ARELDL  F+ +     K       SI +D +E++
Sbjct: 59  FPSQSEGHLSRLRSFLVRGDMLVEIARELDLGDFLFLGQGELKSGGFRRASILSDALEAV 118

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            AA++ DGG++ A   + K ++ R          +D+KT LQE+  A+    PEY +   
Sbjct: 119 FAAVFFDGGVDAAKEVILKLYRSRLEDPNLNDCLKDSKTRLQEYLQAEKIALPEYALIKV 178

Query: 181 SGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            G +H+  F +   +       QG   ++R AEQ+AA  +L++ 
Sbjct: 179 EGDEHEQLFYITCTVEAEKLVTQGEGSNRRKAEQLAAKAMLEQL 222


>gi|299135102|ref|ZP_07028293.1| ribonuclease III [Afipia sp. 1NLS2]
 gi|298590079|gb|EFI50283.1| ribonuclease III [Afipia sp. 1NLS2]
          Length = 282

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 88/202 (43%), Positives = 120/202 (59%), Gaps = 3/202 (1%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +E+RIG+ F N +LL+ ALTH S    S S  +SY+RLEFLGD +LGL++S +L+  F 
Sbjct: 56  EIEQRIGHTFKNPALLKTALTHVSALKSSQSRTDSYQRLEFLGDHVLGLIVSDMLYGAFP 115

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            A EGE+S R   LV  E C  VA+ L L   I++ +           SI  D+ E++I 
Sbjct: 116 KADEGEMSKRLADLVRKEACVDVAKSLGLHENIKLGTVGAGVGARLRNSIVGDICEAVIG 175

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A++LDGG   A  FV + W +R  +  +  RD KT LQEWA  K   TP Y+   R+GP 
Sbjct: 176 AIFLDGGYGAAEQFVLRNWTERMRRPVRPLRDPKTVLQEWAQGKGLPTPVYREVERTGPH 235

Query: 185 HDPRFTVVVEISGLAPAQGMDC 206
           HDPRF V V++ GLA A+G+  
Sbjct: 236 HDPRFRVAVDLPGLASAEGIGS 257


>gi|242373525|ref|ZP_04819099.1| ribonuclease III [Staphylococcus epidermidis M23864:W1]
 gi|242348888|gb|EES40490.1| ribonuclease III [Staphylococcus epidermidis M23864:W1]
          Length = 248

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 64/213 (30%), Positives = 100/213 (46%), Gaps = 5/213 (2%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           G++F N  L ++A +HSS  + +     +  ERLEFLGD +L L +S  LF+      EG
Sbjct: 25  GFSFNNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLFDKHPHLPEG 84

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
            L+    ++V   +    A ++DL   I +     K       S+ +D  E+ + ALYLD
Sbjct: 85  NLTKMRATIVCEPSLVIFANKIDLNELILLGKGEEKTGGRTRPSLISDAFEAFVGALYLD 144

Query: 130 GGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
            G+E    F +K        +      D KT+ QE+ H +      Y++    GP H   
Sbjct: 145 QGLETVWAFAEKVIFPYVEDNELVGVVDFKTQFQEFVHRQNKGDVTYRLIKEEGPAHHRL 204

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           FT  V +   A A+G   +K+ +EQ AA +  K
Sbjct: 205 FTSEVILENKAVAEGKGKTKKESEQKAAEQAYK 237


>gi|332296458|ref|YP_004438381.1| Ribonuclease 3 [Thermodesulfobium narugense DSM 14796]
 gi|332179561|gb|AEE15250.1| Ribonuclease 3 [Thermodesulfobium narugense DSM 14796]
          Length = 228

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 121/222 (54%), Gaps = 9/222 (4%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLL 59
           + +  S LE+ +GY F N+  L  +LTHSS S+++ E   +ERLEFLGD +L L++S  L
Sbjct: 3   TRINLSKLEEDLGYVFTNKKWLMTSLTHSSYSYNHPEVKDFERLEFLGDAVLKLVVSHKL 62

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F  +    EG++S     LVS +  +++A++L+L +++ + S  R    +   SI +   
Sbjct: 63  FVLYPEMSEGDMSKLRAYLVSDKHLTKIAKKLNLQNYLLIGSSER----TIKDSILSASF 118

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E+++ A+Y+D  ++     +DK      +K  ++  D+KT LQE   + FGV PEYKV  
Sbjct: 119 EAILGAVYMDSSLKQCYKIIDKLM---NIKIEEYEEDSKTVLQELTQSLFGVLPEYKVID 175

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             GP H P F V + I           SK+ A+  AA + L 
Sbjct: 176 VRGPSHSPIFEVQLSIDNKFFYTATGSSKKQAQSEAAKKALN 217


>gi|258452531|ref|ZP_05700537.1| ribonuclease III [Staphylococcus aureus A5948]
 gi|257859749|gb|EEV82591.1| ribonuclease III [Staphylococcus aureus A5948]
          Length = 243

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 65/224 (29%), Positives = 105/224 (46%), Gaps = 5/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           R+ T    +G+ + N  L ++A +HSS  + +     +  ERLEFLGD +L L +S  LF
Sbjct: 16  RFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLF 75

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           +   +  EG L+    ++V   +    A ++ L   I +     K       S+ +D  E
Sbjct: 76  DKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLISDAFE 135

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTF 179
           + I ALYLD G+++   F +K       ++      D KT+ QE+ H +      Y +  
Sbjct: 136 AFIGALYLDQGLDIVWKFAEKVIFPHVEQNELLGVVDFKTQFQEYVHQQNKGDVTYNLIK 195

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             GP H   FT  V + G A A+G   +K+ +EQ AA    K+ 
Sbjct: 196 EEGPAHHRLFTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQL 239


>gi|256544903|ref|ZP_05472274.1| ribonuclease III [Anaerococcus vaginalis ATCC 51170]
 gi|256399402|gb|EEU13008.1| ribonuclease III [Anaerococcus vaginalis ATCC 51170]
          Length = 238

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 118/227 (51%), Gaps = 7/227 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59
                LE+ IGY F N++L++ ALTHSS  +  ++    S ERLEFLGD IL L++S  L
Sbjct: 9   EEIEKLEESIGYTFKNKNLIDVALTHSSYINESKDENKSSNERLEFLGDSILDLIVSEEL 68

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           + +  +  EG+L+   + +V   + S+ + + +L+S++               S++AD  
Sbjct: 69  YKNHKTYPEGKLTKIRSRIVCTSSFSKASEKFNLSSYLLFGKGEESHNGREKKSVKADTF 128

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           E+  AA+YLD G +    F+ K + +     L++     D KT+LQE+ +    +  +YK
Sbjct: 129 EAFCAAIYLDAGYDFLKDFLMKNYYEIVKELLENDLLFIDYKTKLQEYFNKTNRIILKYK 188

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +    GP+H+  F + V       + G   +K+ AEQ+AA    K+ 
Sbjct: 189 LVKEEGPEHNKTFYMEVSAKNKKLSTGKGKNKKEAEQMAARIAYKKL 235


>gi|15643859|ref|NP_228908.1| ribonuclease III [Thermotoga maritima MSB8]
 gi|7531194|sp|Q9X0I6|RNC_THEMA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|4981647|gb|AAD36178.1|AE001769_8 ribonuclease III [Thermotoga maritima MSB8]
          Length = 240

 Score =  239 bits (610), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 114/228 (50%), Gaps = 11/228 (4%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-------ESYERLEFLGDRILGLLISTL 58
               +K  G  F N  LL +AL HSS ++          ES E+LEFLGD +L L +  +
Sbjct: 9   VEEFQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEI 68

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L+  +  A+ G+L+   ++  S E  + V+R+++L  F+ +     K       SI AD 
Sbjct: 69  LYKKYPEAEVGDLARVKSAAASEEVLAMVSRKMNLGKFLFLGKGEEKTGGRDRDSILADA 128

Query: 119 VESLIAALYLDGGIEVAGTFVDK---YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
            E+L+AA+YLD G E      ++   ++ ++ +K G+   D KT LQE   ++  V PEY
Sbjct: 129 FEALLAAIYLDQGYEKIKELFEQEFEFYIEKIMK-GEMLFDYKTALQEIVQSEHKVPPEY 187

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +      D D  F V V ++G   A G   +K+ AE+ AA    ++ 
Sbjct: 188 ILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEKL 235


>gi|154173754|ref|YP_001409228.1| ribonuclease III [Campylobacter curvus 525.92]
 gi|189043298|sp|A7H186|RNC_CAMC5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|112803490|gb|EAU00834.1| ribonuclease III [Campylobacter curvus 525.92]
          Length = 223

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 67/221 (30%), Positives = 113/221 (51%), Gaps = 4/221 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               L+K +GY F N  LL +ALTH S       S ERLEFLGD ++ L++   LF  F 
Sbjct: 3   DLENLQKLLGYEFENTKLLNEALTHKST--KLPYSNERLEFLGDAVMDLIVGEYLFKKFS 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG++S    +LV+ ++ + +AR L +  FI +S+    +      S+ +D  E+++ 
Sbjct: 61  KTNEGDMSKLRAALVNEKSFANMARHLQIGEFIHLSTAEANNGGREKASLLSDAFEAVMG 120

Query: 125 ALYLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YL+ G++       +  +     +      +D KT LQE   A  G TP Y++    G
Sbjct: 121 AVYLEAGLDKVREIAVRLLEICYPKIDFSHLVKDYKTALQEITQASLGTTPIYELVRSFG 180

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           PDH   F + + ++    ++ +  SK+ A+Q+AA   L++ 
Sbjct: 181 PDHKKEFEIALLLNDKEISRAIANSKKEAQQMAAKIALEKM 221


>gi|281413069|ref|YP_003347148.1| ribonuclease III [Thermotoga naphthophila RKU-10]
 gi|281374172|gb|ADA67734.1| ribonuclease III [Thermotoga naphthophila RKU-10]
          Length = 240

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 112/227 (49%), Gaps = 9/227 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-------ESYERLEFLGDRILGLLISTL 58
               +K+ G  F N  LL +AL HSS ++          ES E+LEFLGD +L L +  +
Sbjct: 9   VEEFQKKTGINFKNEELLFRALCHSSYANEQNQAGRKNVESNEKLEFLGDAVLELFVCEI 68

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L+  +  A+ G+L+   ++  S E  + V+R+++L  F+ +     K       SI AD 
Sbjct: 69  LYKKYPEAEVGDLARAKSAAASEEVLAMVSRKMNLGKFLFLGKGEEKTGGRDRDSILADA 128

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
            E+L+AA+YLD G E      ++ ++     +  G+   D KT LQE   ++  V PEY 
Sbjct: 129 FEALLAAIYLDQGYEKIKELFEQEFEFYIEKIMRGEMLFDYKTALQEIVQSEHKVPPEYV 188

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +      D D  F V V + G + A G   +K+ AE+ AA    ++ 
Sbjct: 189 LVRTEKNDGDRIFVVEVRVDGKSIAMGRGRTKKEAEKEAARIAYEKL 235


>gi|312864846|ref|ZP_07725077.1| ribonuclease III [Streptococcus downei F0415]
 gi|311099973|gb|EFQ58186.1| ribonuclease III [Streptococcus downei F0415]
          Length = 228

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 72/214 (33%), Positives = 107/214 (50%), Gaps = 6/214 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M AL    L+   G  F ++SLL+ A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MQALE-EKLKADFGIVFKDKSLLDTAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  F    EG+LS   + +V  E+ +  +++    +FI++     K       +I  
Sbjct: 60  RYLFEKFPKRPEGDLSKMRSMIVREESLAGFSKDCGFEAFIKLGKGEEKTGGRERETILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + AL LD GIEV   F+++    +      +  +D KT LQE    K  V   Y
Sbjct: 120 DLFEAFLGALDLDQGIEVVEKFLNQVMIPKVEVGDYEQVKDYKTALQEKLQVKGSVQINY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           +V   +GP HD  F VVV   G   + G   SK+
Sbjct: 180 RVISETGPAHDKHFEVVVSADGKDLSGGQGKSKK 213


>gi|325981700|ref|YP_004294102.1| ribonuclease III [Nitrosomonas sp. AL212]
 gi|325531219|gb|ADZ25940.1| ribonuclease III [Nitrosomonas sp. AL212]
          Length = 237

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 74/217 (34%), Positives = 105/217 (48%), Gaps = 6/217 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
             +R+GY F    LL+ ALTH S S  +    ERLEFLGD IL  +IS +++ HF    E
Sbjct: 17  FCERLGYCFTQSHLLQTALTHRSHSLPH---NERLEFLGDAILNCVISGIIYKHFPELPE 73

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G LS    + V+ +  S +A  L +   +R+     K       SI AD  E+L+ A+YL
Sbjct: 74  GHLSRLRANFVNQKALSSIALNLQMDKLLRLGEGELKSGGCHRPSILADTFEALLGAIYL 133

Query: 129 DGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D       T V   +    + +      +D KT LQE+  ++    PEY V   SG  H 
Sbjct: 134 DSDYAQVETVVMAIYLPLIQNIDLESPAKDPKTLLQEFLQSQKLSLPEYLVVTTSGKAHK 193

Query: 187 PRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKR 222
            +F V   IS L     G   ++R+AEQVAA    ++
Sbjct: 194 QKFKVECVISTLNIRTAGEGTNRRSAEQVAAKLAYEK 230


>gi|88606764|ref|YP_505691.1| ribonuclease III [Anaplasma phagocytophilum HZ]
 gi|123494405|sp|Q2GIW0|RNC_ANAPZ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|88597827|gb|ABD43297.1| ribonuclease III [Anaplasma phagocytophilum HZ]
          Length = 236

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 77/213 (36%), Positives = 117/213 (54%), Gaps = 2/213 (0%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
           K  GY F +  LL+ A+TH SI+     SYERLEFLGD +LGL++S +L+  F    EG 
Sbjct: 18  KISGYRFQDHELLKTAVTHPSIAAERYASYERLEFLGDAVLGLVVSEMLYTLFPDDSEGL 77

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           L+ +  +LV      ++A+ L+L + + +S            S   + +E+LI A+Y+DG
Sbjct: 78  LTKKRIALVRGSKVVEIAQSLNLGNILLMSKGELTSGGISNNSNLENALEALIGAIYVDG 137

Query: 131 GIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
           G+E    F+ ++WK  A   +    +DAKT LQEWA       P Y++  +SG +H P F
Sbjct: 138 GLESVRHFILQHWKPLATNLADTPLQDAKTALQEWAQGHNFAIPSYRLINKSGLEHAPVF 197

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           TV V ++G        C K+ AE  AA  +L++
Sbjct: 198 TVEVTVNGQRV-HATGCKKKYAEIAAAKLMLEK 229


>gi|42782941|ref|NP_980188.1| ribonuclease III [Bacillus cereus ATCC 10987]
 gi|47570283|ref|ZP_00240932.1| ribonuclease III [Bacillus cereus G9241]
 gi|206978506|ref|ZP_03239364.1| ribonuclease III [Bacillus cereus H3081.97]
 gi|217961269|ref|YP_002339837.1| ribonuclease III [Bacillus cereus AH187]
 gi|222097294|ref|YP_002531351.1| ribonuclease iii [Bacillus cereus Q1]
 gi|228986992|ref|ZP_04147118.1| Ribonuclease 3 [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|229157425|ref|ZP_04285503.1| Ribonuclease 3 [Bacillus cereus ATCC 4342]
 gi|229197960|ref|ZP_04324674.1| Ribonuclease 3 [Bacillus cereus m1293]
 gi|81409451|sp|Q732M1|RNC_BACC1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226735369|sp|B7HLI2|RNC_BACC7 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807238|sp|B9IVD8|RNC_BACCQ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|42738868|gb|AAS42796.1| ribonuclease III [Bacillus cereus ATCC 10987]
 gi|47553047|gb|EAL11449.1| ribonuclease III [Bacillus cereus G9241]
 gi|206743285|gb|EDZ54734.1| ribonuclease III [Bacillus cereus H3081.97]
 gi|217063842|gb|ACJ78092.1| ribonuclease III [Bacillus cereus AH187]
 gi|221241352|gb|ACM14062.1| ribonuclease III [Bacillus cereus Q1]
 gi|228585439|gb|EEK43543.1| Ribonuclease 3 [Bacillus cereus m1293]
 gi|228626152|gb|EEK82901.1| Ribonuclease 3 [Bacillus cereus ATCC 4342]
 gi|228772770|gb|EEM21210.1| Ribonuclease 3 [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|324327746|gb|ADY23006.1| ribonuclease III [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 245

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 5/209 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +   +++IG  F +  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 19  FKVFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A EL   S + +             ++ ADV E+
Sbjct: 79  KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            I ALYLD G+E    F+ +    +  +       D K++LQE          EY++   
Sbjct: 139 FIGALYLDQGLETVWGFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQE 198

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            GP H+  F   V ++ +A   G   SK+
Sbjct: 199 KGPAHNREFVSRVTLNNVALGLGSGKSKK 227


>gi|75762036|ref|ZP_00741948.1| Ribonuclease III [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|74490482|gb|EAO53786.1| Ribonuclease III [Bacillus thuringiensis serovar israelensis ATCC
           35646]
          Length = 262

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 5/209 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +   +++IG  F +  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 36  FKVFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 95

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A EL   S + +             ++ ADV E+
Sbjct: 96  KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 155

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            I ALYLD G+E    F+ +    +  +       D K++LQE          EY++   
Sbjct: 156 FIGALYLDQGLETVWEFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNVEYQILQE 215

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            GP H+  F   V ++ +A   G   SK+
Sbjct: 216 KGPAHNREFVSRVTLNNVALGLGSGKSKK 244


>gi|74318104|ref|YP_315844.1| ribonuclease III [Thiobacillus denitrificans ATCC 25259]
 gi|90101653|sp|Q3SH50|RNC_THIDA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|74057599|gb|AAZ98039.1| ribonuclease III [Thiobacillus denitrificans ATCC 25259]
          Length = 226

 Score =  238 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 66/209 (31%), Positives = 102/209 (48%), Gaps = 6/209 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +AL  + L++ +GY F+   LL++ALTH S       + ERLEFLGD +L   ++  L++
Sbjct: 3   NALLDARLQQALGYTFSRSGLLQQALTHRSYG---ALNNERLEFLGDSVLNCSVARALYD 59

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F    EG LS    +LV  ET +++A  L L   +R+     K       SI AD +ES
Sbjct: 60  AFPDLPEGSLSRLRANLVRQETLAEIAGALRLGDSLRLGEGELKSGGFRRPSILADALES 119

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           L  A++LD G + A   V + +      +      +D KT LQE   ++    PEY++  
Sbjct: 120 LFGAVFLDAGFDEAQRVVRRLFDPLVAQIDPKASGKDPKTRLQEILQSRRLPLPEYRLVG 179

Query: 180 RSGPDHDPRFTVVVEISG-LAPAQGMDCS 207
             G  HD  F V   ++  +   +G   S
Sbjct: 180 TEGEAHDQSFIVECLLAKPVLSTRGTGKS 208


>gi|312869965|ref|ZP_07730104.1| ribonuclease III [Lactobacillus oris PB013-T2-3]
 gi|311094550|gb|EFQ52855.1| ribonuclease III [Lactobacillus oris PB013-T2-3]
          Length = 232

 Score =  238 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 107/229 (46%), Gaps = 7/229 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M       L K     F++  LL +A T +S  + +     + YER+EFLGD +L L++S
Sbjct: 1   MIEELQDYLAKEFDIHFSDPRLLAEAFTQASYVNEHPHQNLKFYERIEFLGDAVLELIVS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             ++  +    +G+L+    ++V  ++ S+ A+E     +IR+              +  
Sbjct: 61  EYIYKRYPELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGHGEELAGARQRPGLLC 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D+ ES + ALYLD G      FV +    + L  G F    DAKT LQE+      V  E
Sbjct: 121 DIFESFVGALYLDQGRPAVEKFVRRVIFPK-LDMGWFDHAVDAKTSLQEFLQRDGDVLIE 179

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           Y +   SG +++P F V V  +G   A G   SK+ AE  AA   LK+ 
Sbjct: 180 YHLLEESGTENNPAFHVDVAANGQVIADGQGSSKKQAEMQAAQRALKKL 228


>gi|217967335|ref|YP_002352841.1| Ribonuclease III [Dictyoglomus turgidum DSM 6724]
 gi|217336434|gb|ACK42227.1| Ribonuclease III [Dictyoglomus turgidum DSM 6724]
          Length = 238

 Score =  238 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 72/220 (32%), Positives = 116/220 (52%), Gaps = 5/220 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNH 62
              ++++   +F ++ LL +ALTH S  H     ++  +RLEFLGD +L ++I+ +LF  
Sbjct: 15  VERVKEKTRVSFNDKDLLIEALTHPSFKHENPNFKQDNQRLEFLGDAVLNMIITEILFQR 74

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +  A EG L+ +   LV  ET  + A+ LDL   I +     K       SI +D+ E+ 
Sbjct: 75  YREASEGFLTQKRIYLVKEETLYKKAKSLDLGELILLGVGEEKQGGRDKISILSDLFEAF 134

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           I ALYLD G E    FV++ +K+  ++S +   D K  LQ +   +    P+Y V+   G
Sbjct: 135 IGALYLDKGYEYTKNFVEEIFKEE-IESIEMEVDWKNLLQTYLQKEGKK-PQYIVSREVG 192

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           P+HD  F V + I     ++G   +KR AE  AA + L++
Sbjct: 193 PEHDKTFYVELWIDDEKISEGEGKNKREAEIKAAQKALEK 232


>gi|315453268|ref|YP_004073538.1| ribonuclease III [Helicobacter felis ATCC 49179]
 gi|315132320|emb|CBY82948.1| ribonuclease III [Helicobacter felis ATCC 49179]
          Length = 225

 Score =  238 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 69/220 (31%), Positives = 112/220 (50%), Gaps = 4/220 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              L++R+ Y F + +LL++ALTH S    +  + ERLEFLGD +L L+++ +L+  F  
Sbjct: 2   LEKLQERLAYHFQDMNLLQQALTHKSTKTPH--NNERLEFLGDAVLDLVVAEILYARFAD 59

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
            +EG+LS    SLV+ +   ++A  L L   I +S     +      SI A+  E+L+ A
Sbjct: 60  LQEGDLSKMRASLVNEKAFFKLASFLQLQDCILISPAEANNHGHTKPSILANAFEALMGA 119

Query: 126 LYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YL+ G+E   T + ++       L       D K+ LQE   A+F V P Y +   SGP
Sbjct: 120 IYLESGLEPIKTLMTRFLDHVYPDLSLQSTFMDYKSALQELTQARFKVVPTYTLKSESGP 179

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           DH  +F + + I           SK+ A+Q+ A    ++ 
Sbjct: 180 DHAKQFEMQIFILDKLYGTCTAKSKKEAQQLCAQMAYQQL 219


>gi|228940937|ref|ZP_04103496.1| Ribonuclease 3 [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228966797|ref|ZP_04127841.1| Ribonuclease 3 [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228792896|gb|EEM40454.1| Ribonuclease 3 [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228818773|gb|EEM64839.1| Ribonuclease 3 [Bacillus thuringiensis serovar berliner ATCC 10792]
          Length = 225

 Score =  238 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 98/206 (47%), Gaps = 5/206 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFD 64
            +++IG  F +  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF  + 
Sbjct: 2   FQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYP 61

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EGEL+    ++V   +  + A EL   S + +             ++ ADV E+ I 
Sbjct: 62  TMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEAFIG 121

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           ALYLD G+E    F+ +    +  +       D K++LQE          EY++    GP
Sbjct: 122 ALYLDQGLETVWEFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNVEYQILQEKGP 181

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKR 209
            H+  F   V ++ +A   G   SK+
Sbjct: 182 AHNREFVSRVTLNNVALGLGSGKSKK 207


>gi|56478590|ref|YP_160179.1| ribonuclease III [Aromatoleum aromaticum EbN1]
 gi|81598583|sp|Q5P086|RNC_AZOSE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|56314633|emb|CAI09278.1| ribonuclease III [Aromatoleum aromaticum EbN1]
          Length = 225

 Score =  238 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 73/208 (35%), Positives = 106/208 (50%), Gaps = 6/208 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +   L++ +G+ F N +LLE+ALTH S     Q + ERLEFLGD IL  +++  LF  F 
Sbjct: 4   KLDRLQRSLGHRFDNPALLEQALTHRSFG---QPNNERLEFLGDSILNCVVAIALFERFA 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           S +EGE+S    SLV  +   +VA ELDL  ++R+     K       SI AD +E++ A
Sbjct: 61  SLREGEMSRLRASLVCQDGLHRVALELDLGEYLRLGEGEMKSGGFRRPSILADALEAVFA 120

Query: 125 ALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A +LD G   A   +D+ +     A+  G   +D KT LQE    +    P Y +    G
Sbjct: 121 ATFLDQGFAAAKAVIDRLYDPMIAAIDPGVAAKDPKTALQELLQGRKLPLPTYVMAKVHG 180

Query: 183 PDHDPRFTVVVEISGLAP-AQGMDCSKR 209
             H   F VV E++ L     G   ++R
Sbjct: 181 EAHAQEFEVVCEVNALNLRTTGRGTNRR 208


>gi|314933411|ref|ZP_07840776.1| ribonuclease III [Staphylococcus caprae C87]
 gi|313653561|gb|EFS17318.1| ribonuclease III [Staphylococcus caprae C87]
          Length = 245

 Score =  238 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 63/213 (29%), Positives = 99/213 (46%), Gaps = 5/213 (2%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           G++F N  L ++A +HSS  + +     +  ERLEFLGD +L L +S  LF+      EG
Sbjct: 25  GFSFNNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLFDKHPHLPEG 84

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
            L+    ++V   +    A ++DL   I +     K       S+ +D  E+ + ALYLD
Sbjct: 85  NLTKMRATIVCEPSLVIFANKIDLNELILLGKGEEKTGGRTRPSLISDAFEAFVGALYLD 144

Query: 130 GGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
            G++    F +K               D KT+ QE+ H +      Y++    GP H   
Sbjct: 145 QGLDTVWKFAEKVIFPYVEDDELVGVVDFKTQFQEYVHRQNKGDVTYRLIKEEGPAHHRL 204

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           FT  V +   A A+G   +K+ +EQ AA +  K
Sbjct: 205 FTSEVILENNAVAEGKGKTKKESEQKAAEQAYK 237


>gi|229098318|ref|ZP_04229265.1| Ribonuclease 3 [Bacillus cereus Rock3-29]
 gi|229104411|ref|ZP_04235080.1| Ribonuclease 3 [Bacillus cereus Rock3-28]
 gi|229117335|ref|ZP_04246713.1| Ribonuclease 3 [Bacillus cereus Rock1-3]
 gi|228666235|gb|EEL21699.1| Ribonuclease 3 [Bacillus cereus Rock1-3]
 gi|228679109|gb|EEL33317.1| Ribonuclease 3 [Bacillus cereus Rock3-28]
 gi|228685216|gb|EEL39147.1| Ribonuclease 3 [Bacillus cereus Rock3-29]
          Length = 245

 Score =  238 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 5/209 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +   +++IG  F +  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 19  FKVFQEKIGITFTDEKLLTQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A EL   S + +             ++ ADV E+
Sbjct: 79  KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            I ALYLD G+E    F+ +    +  +       D K++LQE          EY++   
Sbjct: 139 FIGALYLDQGLETVWGFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQE 198

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            GP H+  F   V ++ +A   G   SK+
Sbjct: 199 KGPAHNREFVSRVTLNNVALGLGSGKSKK 227


>gi|283781424|ref|YP_003372179.1| ribonuclease III [Pirellula staleyi DSM 6068]
 gi|283439877|gb|ADB18319.1| ribonuclease III [Pirellula staleyi DSM 6068]
          Length = 273

 Score =  238 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 77/217 (35%), Positives = 116/217 (53%), Gaps = 3/217 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            +  E+R+GY F ++ LL  ALTH+S +     S ERLEFLGD ILG+ +  +L+  F  
Sbjct: 45  LARCERRLGYVFNSKPLLRSALTHASGAEHRLASNERLEFLGDAILGVYVCEMLYRQFPD 104

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+L+   + +VS +TC++V+  L L  F+ +         +   S+ ADV ESLIAA
Sbjct: 105 YLEGDLTKVKSVVVSRQTCAKVSEALGLQEFLILGKG-MSSSPNVPPSLLADVFESLIAA 163

Query: 126 LYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YLDGG + A  F++ Y         +G+   + K+ LQ++A  + G TP Y +    GP
Sbjct: 164 IYLDGGEQAARQFINNYIGPEVELAAAGELGGNYKSLLQQFAQRECGNTPTYHLLDEKGP 223

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           DH   F +   + G         +K+ AEQ AA   L
Sbjct: 224 DHSKCFKISASVGGKKYQAAWGRNKKEAEQRAANNAL 260


>gi|254524282|ref|ZP_05136337.1| ribonuclease III [Stenotrophomonas sp. SKA14]
 gi|219721873|gb|EED40398.1| ribonuclease III [Stenotrophomonas sp. SKA14]
          Length = 226

 Score =  238 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 73/217 (33%), Positives = 111/217 (51%), Gaps = 7/217 (3%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
             IG+ F + +LL++ALTH S    +    ERLEFLGD I+ ++ +  L+  +  A EG 
Sbjct: 10  DLIGHPFRDAALLKQALTHRSAGAPH---NERLEFLGDSIVNMMAAEALYRRWPKADEGA 66

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           ++     LV     + + R L+L   + +     K       SI AD VE+++AA+YLD 
Sbjct: 67  MTRARAELVREGALAVIGRSLELGERLTLGPGEMKSGGHRRDSILADAVEAVVAAIYLDA 126

Query: 131 GIEVAGTFVDKYW---KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           G E     V  ++    +    SG+  +D KT LQEW  A+    P+Y++   SG DH  
Sbjct: 127 GFEACRAVVLPWFSASIEALPASGRPEKDPKTRLQEWLQARQKALPQYELVSESGDDHAK 186

Query: 188 RFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
            F V   ++   A  +G   S+R AEQ AAA VL++ 
Sbjct: 187 HFRVRCNVADPAASTEGEGASRRLAEQQAAAAVLEQL 223


>gi|94263438|ref|ZP_01287251.1| Ribonuclease III [delta proteobacterium MLMS-1]
 gi|93456168|gb|EAT06307.1| Ribonuclease III [delta proteobacterium MLMS-1]
          Length = 233

 Score =  238 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 76/200 (38%), Positives = 102/200 (51%), Gaps = 4/200 (2%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
           GY F   SLLE AL HSS +    +   S ERLEFLGD +LGL ++ LL+    +  EG+
Sbjct: 16  GYRFKRTSLLELALVHSSRAAEAGKGVSSNERLEFLGDAVLGLAVAALLYEAHPTMPEGD 75

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           LS    +LV+ E  + +AR+L L  FIR+             SI A   E+L+ A+YLDG
Sbjct: 76  LSRHRAALVNEEHLAGMARQLALGEFIRLGRGEEATGGRDKPSILAATFEALVGAVYLDG 135

Query: 131 GIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
           G E A   +   +          R  D+K+ LQE    + G  P Y +    GPDHD RF
Sbjct: 136 GYEPALALLRPLFAPWVANPPLPRISDSKSALQEVLQQRHGEGPVYYLENEEGPDHDKRF 195

Query: 190 TVVVEISGLAPAQGMDCSKR 209
           TV VE+ G    +G    K+
Sbjct: 196 TVRVELQGKVLGRGRGRGKK 215


>gi|157825292|ref|YP_001493012.1| ribonuclease III [Rickettsia akari str. Hartford]
 gi|189043339|sp|A8GM79|RNC_RICAH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|157799250|gb|ABV74504.1| ribonuclease III [Rickettsia akari str. Hartford]
          Length = 227

 Score =  238 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 117/223 (52%), Gaps = 5/223 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
            + TLEK +GY+F N+ LL +AL+H S+   ++    + YERLEFLGD +L L+++ +LF
Sbjct: 3   SFETLEKLLGYSFKNQELLIEALSHPSLRQHHEYKYDKDYERLEFLGDAVLNLVVTEILF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            +F S  EG L+   + LV  ET   V  +L L  +I ++            +   + +E
Sbjct: 63  RNFASYNEGNLAKIRSYLVCKETICVVGTKLTLKDYIIMTYGEEVAGGRDNPNNIENAME 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +LIAA+YLD  IE     + K W++          D KT LQEWA A     P Y++  R
Sbjct: 123 ALIAAIYLDSNIETTRNIIGKLWEEFIKIQNLTDYDPKTALQEWAQASSHHLPIYRLIKR 182

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            G  H   FTV+V++       G   S + AE+ AA ++L R 
Sbjct: 183 EGAAHSSTFTVLVKVKDYEQ-TGTGHSIKEAEKNAARDLLHRL 224


>gi|322834127|ref|YP_004214154.1| ribonuclease III [Rahnella sp. Y9602]
 gi|321169328|gb|ADW75027.1| ribonuclease III [Rahnella sp. Y9602]
          Length = 226

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F  + LL +ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFQQQELLLQALTHRSASSKH---NERLEFLGDSILSYVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSDIQTVEKLILDWYRSRLDEISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLNQPVVGTGSSRRK 210


>gi|300869947|ref|YP_003784818.1| ribonuclease III [Brachyspira pilosicoli 95/1000]
 gi|300687646|gb|ADK30317.1| ribonuclease III [Brachyspira pilosicoli 95/1000]
          Length = 229

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 69/216 (31%), Positives = 115/216 (53%), Gaps = 5/216 (2%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           EK + Y+F N++ L +A+TH + ++     +  +RLEFLGD +L L+IS  ++  +++ K
Sbjct: 10  EKVLQYSFKNKNYLLEAITHRTFANENGNMKYNQRLEFLGDSVLSLIISEHIYKEYNNVK 69

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG+LS     LVS  T + ++R+L L  F+ +             ++  D+ E++I A+Y
Sbjct: 70  EGKLSKIKAYLVSQNTLANISRKLKLGDFLLLGKGEEASGGRERDNMLEDLFEAIIGAIY 129

Query: 128 LDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           LD  +E    FV + +K     L    F +D KT LQE    K+ +TP YK ++    + 
Sbjct: 130 LDSNLENTKNFVMRVYKDILNKLDINNFDKDYKTILQEIVQKKYKITPTYK-SYEYNEND 188

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +  F V V +     A G+  SK+ AE  AA + L+
Sbjct: 189 NIMFKVEVYVKTKKYASGIGKSKKEAEINAAKKALE 224


>gi|296127821|ref|YP_003635073.1| ribonuclease III [Brachyspira murdochii DSM 12563]
 gi|296019637|gb|ADG72874.1| ribonuclease III [Brachyspira murdochii DSM 12563]
          Length = 246

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 120/231 (51%), Gaps = 9/231 (3%)

Query: 1   MSALRYSTL----EKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGL 53
           M+ +    +    ++ I Y F N+S L +A+TH + ++  ++     +RLEFLGD +L L
Sbjct: 1   MNIINIEEILNNCQEVIKYEFRNKSYLLEAITHRTYANESKKKMKYNQRLEFLGDSVLSL 60

Query: 54  LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
           +IS  LF  ++++KEG LS   +SLVS ++ + +++EL L  FI +          +  +
Sbjct: 61  IISDYLFKKYNTSKEGLLSKVKSSLVSQKSLADISKELKLGDFILLGHGEEVSGGRYRDN 120

Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGV 171
           +  D+ E+++ A+YLD GI  A  FV K +K R   L    F +D KT  QE    K   
Sbjct: 121 MLEDLFEAIVGAIYLDSGINNAAQFVMKAYKNRLNNLDIENFDKDYKTIFQELIQKKHKT 180

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +P YK       ++   F   V ++    + G+  SK+ AE  AA + L+ 
Sbjct: 181 SPVYKSYEYHDENNHEMFKSEVYVNDKNFSSGIGKSKKEAETEAAKKALEN 231


>gi|30021937|ref|NP_833568.1| ribonuclease III [Bacillus cereus ATCC 14579]
 gi|206971258|ref|ZP_03232209.1| ribonuclease III [Bacillus cereus AH1134]
 gi|218232410|ref|YP_002368650.1| ribonuclease III [Bacillus cereus B4264]
 gi|218899002|ref|YP_002447413.1| ribonuclease III [Bacillus cereus G9842]
 gi|228902352|ref|ZP_04066509.1| Ribonuclease 3 [Bacillus thuringiensis IBL 4222]
 gi|228909674|ref|ZP_04073497.1| Ribonuclease 3 [Bacillus thuringiensis IBL 200]
 gi|228922603|ref|ZP_04085903.1| Ribonuclease 3 [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228954126|ref|ZP_04116154.1| Ribonuclease 3 [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228960065|ref|ZP_04121729.1| Ribonuclease 3 [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228973866|ref|ZP_04134442.1| Ribonuclease 3 [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228980456|ref|ZP_04140766.1| Ribonuclease 3 [Bacillus thuringiensis Bt407]
 gi|229047536|ref|ZP_04193126.1| Ribonuclease 3 [Bacillus cereus AH676]
 gi|229071347|ref|ZP_04204570.1| Ribonuclease 3 [Bacillus cereus F65185]
 gi|229081104|ref|ZP_04213614.1| Ribonuclease 3 [Bacillus cereus Rock4-2]
 gi|229111320|ref|ZP_04240873.1| Ribonuclease 3 [Bacillus cereus Rock1-15]
 gi|229129125|ref|ZP_04258098.1| Ribonuclease 3 [Bacillus cereus BDRD-Cer4]
 gi|229146420|ref|ZP_04274791.1| Ribonuclease 3 [Bacillus cereus BDRD-ST24]
 gi|229152048|ref|ZP_04280243.1| Ribonuclease 3 [Bacillus cereus m1550]
 gi|229180125|ref|ZP_04307469.1| Ribonuclease 3 [Bacillus cereus 172560W]
 gi|229192018|ref|ZP_04318988.1| Ribonuclease 3 [Bacillus cereus ATCC 10876]
 gi|296504344|ref|YP_003666044.1| ribonuclease III [Bacillus thuringiensis BMB171]
 gi|38372411|sp|Q819V8|RNC_BACCR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226735367|sp|B7IUK8|RNC_BACC2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226735368|sp|B7HDX2|RNC_BACC4 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|29897493|gb|AAP10769.1| Ribonuclease III [Bacillus cereus ATCC 14579]
 gi|206734030|gb|EDZ51201.1| ribonuclease III [Bacillus cereus AH1134]
 gi|218160367|gb|ACK60359.1| ribonuclease III [Bacillus cereus B4264]
 gi|218544165|gb|ACK96559.1| ribonuclease III [Bacillus cereus G9842]
 gi|228591569|gb|EEK49418.1| Ribonuclease 3 [Bacillus cereus ATCC 10876]
 gi|228603334|gb|EEK60811.1| Ribonuclease 3 [Bacillus cereus 172560W]
 gi|228631397|gb|EEK88031.1| Ribonuclease 3 [Bacillus cereus m1550]
 gi|228637053|gb|EEK93512.1| Ribonuclease 3 [Bacillus cereus BDRD-ST24]
 gi|228654362|gb|EEL10227.1| Ribonuclease 3 [Bacillus cereus BDRD-Cer4]
 gi|228672096|gb|EEL27387.1| Ribonuclease 3 [Bacillus cereus Rock1-15]
 gi|228702148|gb|EEL54624.1| Ribonuclease 3 [Bacillus cereus Rock4-2]
 gi|228711801|gb|EEL63753.1| Ribonuclease 3 [Bacillus cereus F65185]
 gi|228723783|gb|EEL75138.1| Ribonuclease 3 [Bacillus cereus AH676]
 gi|228779276|gb|EEM27533.1| Ribonuclease 3 [Bacillus thuringiensis Bt407]
 gi|228785891|gb|EEM33894.1| Ribonuclease 3 [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228799581|gb|EEM46534.1| Ribonuclease 3 [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228805446|gb|EEM52037.1| Ribonuclease 3 [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228837032|gb|EEM82373.1| Ribonuclease 3 [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228849963|gb|EEM94794.1| Ribonuclease 3 [Bacillus thuringiensis IBL 200]
 gi|228857321|gb|EEN01824.1| Ribonuclease 3 [Bacillus thuringiensis IBL 4222]
 gi|296325396|gb|ADH08324.1| ribonuclease III [Bacillus thuringiensis BMB171]
 gi|326941618|gb|AEA17514.1| ribonuclease III [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 245

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 5/209 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +   +++IG  F +  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 19  FKVFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A EL   S + +             ++ ADV E+
Sbjct: 79  KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            I ALYLD G+E    F+ +    +  +       D K++LQE          EY++   
Sbjct: 139 FIGALYLDQGLETVWEFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNVEYQILQE 198

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            GP H+  F   V ++ +A   G   SK+
Sbjct: 199 KGPAHNREFVSRVTLNNVALGLGSGKSKK 227


>gi|171780118|ref|ZP_02921022.1| hypothetical protein STRINF_01906 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281466|gb|EDT46901.1| hypothetical protein STRINF_01906 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 228

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 76/225 (33%), Positives = 119/225 (52%), Gaps = 6/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M AL  + L++  G AF +++LLE A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1   MQALD-TKLQRDFGIAFEDKTLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  +    EG+LS   + +V  E+ +  +R      FI++ +   K       +I  
Sbjct: 60  QYLFKKYPKKPEGDLSKMRSVIVREESLAGFSRYCGFDEFIKLGNGEEKSGGRNRDTILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEY 175
           D+ E+ + AL +D G+E    F+++    +  K   +  +D KT LQE       VT +Y
Sbjct: 120 DLFEAFLGALLMDQGVEAVNKFLNQVMIPQVEKGNFERVKDYKTTLQELLQGHSDVTIDY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +V+  SGP H   F V V ++  A ++G+  SK+ AEQ AA   L
Sbjct: 180 RVSSESGPAHAKVFEVTVYVNDEAKSKGIGKSKKLAEQDAAKNAL 224


>gi|52141634|ref|YP_085190.1| ribonuclease III [Bacillus cereus E33L]
 gi|81686565|sp|Q636H7|RNC_BACCZ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|51975103|gb|AAU16653.1| ribonuclease III [Bacillus cereus E33L]
          Length = 245

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 61/209 (29%), Positives = 98/209 (46%), Gaps = 5/209 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +   +++IG  F +  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 19  FKVFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A EL     + +             ++ ADV E+
Sbjct: 79  KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGGLVLLGKGEEMTGGRERPALLADVFEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            I ALYLD G+E    F+ +    +  +       D K++LQE          EY++   
Sbjct: 139 FIGALYLDQGLETVWGFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQE 198

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            GP H+  F   V ++ +A   G   SK+
Sbjct: 199 KGPAHNREFVSRVTLNNVALGLGSGKSKK 227


>gi|295836307|ref|ZP_06823240.1| ribonuclease III [Streptomyces sp. SPB74]
 gi|295825949|gb|EFG64564.1| ribonuclease III [Streptomyces sp. SPB74]
          Length = 280

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 79/220 (35%), Positives = 120/220 (54%), Gaps = 6/220 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           +A  ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L
Sbjct: 42  AASSHTLLEGRLGYHLES-ALLVRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTL 100

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +       EG+L+    ++V++   ++V+R LDL +FIR+             SI AD +
Sbjct: 101 YRAHPDLPEGQLAKLRAAVVNSRALAEVSRGLDLGAFIRLGRGEEGTGGRDKASILADTL 160

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD G++ AG  V + +     KS +     D KT LQE    +    PEY V
Sbjct: 161 EAVIGAVYLDQGLDKAGELVHRLFDPLIEKSAELGAGLDWKTSLQELTAVEGLGVPEYLV 220

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           T   GPDH+  FT    + G++   G   SK+ AEQ AA 
Sbjct: 221 T-EEGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 259


>gi|315640113|ref|ZP_07895235.1| ribonuclease III [Enterococcus italicus DSM 15952]
 gi|315484090|gb|EFU74564.1| ribonuclease III [Enterococcus italicus DSM 15952]
          Length = 233

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 65/214 (30%), Positives = 98/214 (45%), Gaps = 5/214 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M     ++L++     F    LLE+A THSS  + ++       ERLEFLGD +L LL+S
Sbjct: 4   MDNQFVTSLKENYQIVFQEIGLLEQAFTHSSYVNEHRNMALSDNERLEFLGDAVLELLVS 63

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  F    EG+L+    S+V  ++ ++ ARE     +IR+             S+  
Sbjct: 64  QYLYRKFPEIPEGKLTKLRASMVREDSLAEFARECGFDQYIRLGKGEENSGGRQRNSLLC 123

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEY 175
           D+ ES + ALYLD  +E    F+ K    +          D KT+LQE       V  +Y
Sbjct: 124 DLFESFLGALYLDQELEAVNQFLKKVVFPKVDAGAFSHEMDHKTKLQEVLQRAGDVFIDY 183

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           ++T   GP H+  F   V   G    +G   SK+
Sbjct: 184 RLTNEEGPAHERVFWTEVYCDGQLIGRGQGKSKK 217


>gi|257460238|ref|ZP_05625341.1| ribonuclease III [Campylobacter gracilis RM3268]
 gi|257442303|gb|EEV17443.1| ribonuclease III [Campylobacter gracilis RM3268]
          Length = 303

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 71/219 (32%), Positives = 117/219 (53%), Gaps = 7/219 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               L++++GY F N++ L+ ALTH S  + +  + ERLEFLGD ++ L++   LF  F 
Sbjct: 3   NLEKLQEKLGYKFKNQTHLKIALTHKSAKNGH--NNERLEFLGDAVMDLIVGEYLFKKF- 59

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           S+ EG+LS    +LV+  + S+ A+ L +   + +S    ++      S+ +D  E+++ 
Sbjct: 60  SSDEGDLSKLRAALVNESSFSKFAKFLGIGENLNMSLSEERNGGREKPSLLSDAFEAIMG 119

Query: 125 ALYLDGGIEVAGTF---VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           A+YL+ G++        + +    R +   +  RD KT LQE   AKFGVTPEY +   S
Sbjct: 120 AVYLESGLQNTARIAIAILEILYPR-ISFNELVRDYKTALQELTQAKFGVTPEYILLGSS 178

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           GPDH   F +   + G   +  +  SK+ AEQ  A   +
Sbjct: 179 GPDHKKSFEMAALVGGKWLSSAVGASKKEAEQKCAQIAI 217


>gi|148553136|ref|YP_001260718.1| RNAse III [Sphingomonas wittichii RW1]
 gi|148498326|gb|ABQ66580.1| RNAse III [Sphingomonas wittichii RW1]
          Length = 234

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 89/211 (42%), Positives = 123/211 (58%), Gaps = 3/211 (1%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           +G+   + +L E+ALTH S   ++   YERLEFLGDR+LGL+    LF  F    EG+LS
Sbjct: 26  LGHEPRDLALFERALTHGSYGPNH---YERLEFLGDRVLGLVAGAWLFELFPDEPEGKLS 82

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
            R N++VS ETC+ V R + +A+ +++    R D      ++  DVVE+LI ALYL+GG+
Sbjct: 83  RRLNAIVSRETCADVGRAIGVATHMKLGKQARDDGAVQSDNVLGDVVEALIGALYLEGGL 142

Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
           + A  FV + W  RA    +  +  K+ LQEWA A     P Y +  RSGP H PRFTV 
Sbjct: 143 DAAQAFVRRAWDDRATGQAQAPKHPKSALQEWAAAHRCKPPVYTMGNRSGPHHAPRFTVT 202

Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V I G A A     SK+ AE  AA  +L++ 
Sbjct: 203 VAIPGRAEASAEGSSKQEAETAAAKALLEKL 233


>gi|65321177|ref|ZP_00394136.1| COG0571: dsRNA-specific ribonuclease [Bacillus anthracis str.
           A2012]
 gi|118479071|ref|YP_896222.1| ribonuclease III [Bacillus thuringiensis str. Al Hakam]
 gi|118418296|gb|ABK86715.1| RNAse III [Bacillus thuringiensis str. Al Hakam]
          Length = 262

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 5/209 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +   +++IG  F +  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 36  FKLFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 95

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A EL   S + +             ++ ADV E+
Sbjct: 96  KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 155

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            I ALYLD G+E    F+ +    +  +       D K++LQE          EY++   
Sbjct: 156 FIGALYLDQGLETVWGFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQE 215

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            GP H+  F   V ++ +A   G   SK+
Sbjct: 216 KGPAHNREFVSRVTLNNVALGLGSGKSKK 244


>gi|227504755|ref|ZP_03934804.1| ribonuclease III [Corynebacterium striatum ATCC 6940]
 gi|227198605|gb|EEI78653.1| ribonuclease III [Corynebacterium striatum ATCC 6940]
          Length = 256

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 114/224 (50%), Gaps = 6/224 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           +A+ ++ L K +G   A+ +L   ALTH S ++      + ERLEFLGD +LGL +++ L
Sbjct: 18  AAVDHAPLLKSLGVELADENL-RLALTHRSFANENGYLPNNERLEFLGDAVLGLSVASKL 76

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  + S  E ++S    S+VS    S +ARE++L   I +    +        SI AD  
Sbjct: 77  YEQYPSRPESDISKMRASIVSRYGLSDIAREIELGQHILLGKGEQSTGGRDKDSILADTT 136

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177
           E++  A+Y   G E A   + + ++++   +    R  D KT LQE         P Y  
Sbjct: 137 EAIFGAIYRQYGFETARDVILRLFQKKIDNAVVSGRHMDWKTNLQELCAELKAPMPVYTA 196

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           T  +GP+HD  FT V  ++GL    G+  +K+ AEQ AA E  +
Sbjct: 197 TS-TGPEHDQTFTAVATVAGLTVGNGVGHNKKLAEQQAAQEACQ 239


>gi|269127639|ref|YP_003301009.1| ribonuclease III [Thermomonospora curvata DSM 43183]
 gi|268312597|gb|ACY98971.1| ribonuclease III [Thermomonospora curvata DSM 43183]
          Length = 268

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 77/216 (35%), Positives = 112/216 (51%), Gaps = 6/216 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
           + LE+ +G + + R LLE+ALTH S ++      + ERLEFLGD +LGL+++  LF +  
Sbjct: 27  AELERALGVSIS-RELLERALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLFRNHP 85

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+L+    ++V+    + VAR L   ++IR+            TSI AD +E+LI 
Sbjct: 86  DLPEGQLAKLRAAVVNMRALAGVARSLGAGAYIRLGRGEEGTGGRDKTSILADTLEALIG 145

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YL+ G++ A   V + +     KS       D KT LQE    +    PEY V   SG
Sbjct: 146 AVYLEHGLDEAAKLVHRLFDSLIDKSASLGAGLDWKTSLQELTAEEELGVPEYHV-AESG 204

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           PDH   F   V + G+    G   SK+ AEQ AA  
Sbjct: 205 PDHQKTFRATVRVGGVTYGSGEGRSKKEAEQRAAEA 240


>gi|217977175|ref|YP_002361322.1| Ribonuclease III [Methylocella silvestris BL2]
 gi|254807894|sp|B8EK13|RNC_METSB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|217502551|gb|ACK49960.1| Ribonuclease III [Methylocella silvestris BL2]
          Length = 235

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 99/224 (44%), Positives = 135/224 (60%), Gaps = 1/224 (0%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +A   S LE RIG+ F+   L+E ALTH S +   + SY+RLEFLGDR+LG++++ +L+ 
Sbjct: 3   AAPDLSALEARIGHRFSAADLIEAALTHVSAAQGKRVSYQRLEFLGDRVLGVVVANMLYG 62

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F  A EGELS R   LV  E+C++VA E  + +++RV     K   S   +I  DV ES
Sbjct: 63  AFPDADEGELSRRLADLVRKESCAEVALEWGVEAYVRVGESE-KQNASVNRAILGDVCES 121

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +I A++LDGG   A   V + ++ R     +  RD KT LQEWA A+    P Y+ T R+
Sbjct: 122 IIGAVFLDGGFAPAQRVVTQAFEPRMRSPRRPLRDPKTTLQEWAQARGLPPPSYRETART 181

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           GPDH P FT+ VEI+G   A+    +KR AEQ AAA  L RE I
Sbjct: 182 GPDHAPEFTISVEIAGFQQAEARGFAKRLAEQAAAAAFLTREKI 225


>gi|313888515|ref|ZP_07822182.1| ribonuclease III [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845544|gb|EFR32938.1| ribonuclease III [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 231

 Score =  238 bits (607), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 76/228 (33%), Positives = 115/228 (50%), Gaps = 7/228 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M+      LE+++ Y F ++ LLE ALTHSS  +  +    ES ERLEFLGD +LGL+I 
Sbjct: 1   MTFSNLKNLERKLNYDFKDKGLLETALTHSSYVNENKMKQYESNERLEFLGDAVLGLVIG 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
              + +F    EG L+      V+ +    +A+ L+L  FIR     +K+  S   S  A
Sbjct: 61  EYFYKNFPKDLEGSLTKMRAESVNEKVLFFIAKGLELGDFIRFGKGEKKNGGSKRESTSA 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPE 174
           D +E+LI A++LD     A   V   + +   +     F  D KT LQE    + G   E
Sbjct: 121 DALEALIGAIFLDSNFNNAKKIVLNLFDEFLKEDAYKLFNVDFKTMLQEEVQ-RSGQKAE 179

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           YK+    GPD+D  F   + +  +   +G   +K+ ++Q AA E L+R
Sbjct: 180 YKLVREEGPDNDKTFFTELYLDEVLAGKGSGKTKKESQQEAAREALER 227


>gi|281491298|ref|YP_003353278.1| ribonuclease III [Lactococcus lactis subsp. lactis KF147]
 gi|281375039|gb|ADA64557.1| Ribonuclease III [Lactococcus lactis subsp. lactis KF147]
          Length = 231

 Score =  238 bits (607), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 67/223 (30%), Positives = 103/223 (46%), Gaps = 9/223 (4%)

Query: 8   TLEKRI----GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59
            L+K++    G  F +  LL+   THSS ++  +     + ERLEFLGD  L L+IS  L
Sbjct: 3   KLQKKLKNDYGLVFNDEDLLKTVFTHSSFTNEERLPKIANNERLEFLGDVALSLVISDYL 62

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  +    EGELS   +S+V  E+ +  +R      F+R+     K       +   ++ 
Sbjct: 63  YRTYPEKLEGELSKMRSSIVRTESLANFSRSCGFGEFLRLGHGEEKMGGRDRETTLENLF 122

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVT 178
           E+ + AL++D G++    F+              +  D KTELQE        T  YK+ 
Sbjct: 123 EAFLGALFIDQGMDEVRKFIQHVVIPHVKNDDYVKVIDYKTELQEVLQIGGETTISYKIL 182

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              GP HD  F   V  +G    +G+  SK+ AEQ AA   +K
Sbjct: 183 KEEGPAHDRSFVAAVFNNGKELGRGLGKSKKVAEQKAAENAIK 225


>gi|312863862|ref|ZP_07724100.1| ribonuclease III [Streptococcus vestibularis F0396]
 gi|322516541|ref|ZP_08069457.1| ribonuclease III [Streptococcus vestibularis ATCC 49124]
 gi|311101398|gb|EFQ59603.1| ribonuclease III [Streptococcus vestibularis F0396]
 gi|322124929|gb|EFX96349.1| ribonuclease III [Streptococcus vestibularis ATCC 49124]
          Length = 229

 Score =  238 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 67/213 (31%), Positives = 104/213 (48%), Gaps = 8/213 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M+ L    LE+  G  F  + LLE A TH+S ++ ++       ERLEFLGD  L L+IS
Sbjct: 1   MNQLE-QKLEQDFGIVFNQKDLLETAFTHTSYANEHRLLNISHNERLEFLGDAALQLVIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  + +  EGE+S   +++V  E+ +  ++      +IR+     K       +I  
Sbjct: 60  VYLYKRYPNKPEGEMSKMRSTIVREESLAGFSKACGFEQYIRLGKGEEKSGGRERATILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D+ E+ + ALYLD G+     F+++    + ++ G F R  D KT LQE       V   
Sbjct: 120 DLWEAFLGALYLDQGLPAVEKFLNQVMIPQ-VEKGNFDRVTDYKTALQERLQVNGTVDIT 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           Y V   SGP H   FT+ V + G   + G+  S
Sbjct: 179 YTVIDESGPAHAKEFTMQVAVDGKELSTGLGKS 211


>gi|238762797|ref|ZP_04623766.1| Ribonuclease 3 [Yersinia kristensenii ATCC 33638]
 gi|238699102|gb|EEP91850.1| Ribonuclease 3 [Yersinia kristensenii ATCC 33638]
          Length = 226

 Score =  238 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 74/213 (34%), Positives = 112/213 (52%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F  + LL +ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFQQQELLLQALTHRSASSKH---NERLEFLGDSILSFVIANELY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I   G  +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGIFLDSDIHTVGRLILDWYRSRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLNEPVIGTGSSRRK 210


>gi|30263852|ref|NP_846229.1| ribonuclease III [Bacillus anthracis str. Ames]
 gi|47529278|ref|YP_020627.1| ribonuclease III [Bacillus anthracis str. 'Ames Ancestor']
 gi|49186699|ref|YP_029951.1| ribonuclease III [Bacillus anthracis str. Sterne]
 gi|49478414|ref|YP_037910.1| ribonuclease III [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|165873286|ref|ZP_02217894.1| ribonuclease III [Bacillus anthracis str. A0488]
 gi|167636662|ref|ZP_02394952.1| ribonuclease III [Bacillus anthracis str. A0442]
 gi|167642023|ref|ZP_02400254.1| ribonuclease III [Bacillus anthracis str. A0193]
 gi|170689645|ref|ZP_02880826.1| ribonuclease III [Bacillus anthracis str. A0465]
 gi|177655964|ref|ZP_02937116.1| ribonuclease III [Bacillus anthracis str. A0174]
 gi|190565836|ref|ZP_03018755.1| ribonuclease III [Bacillus anthracis Tsiankovskii-I]
 gi|196035867|ref|ZP_03103269.1| ribonuclease III [Bacillus cereus W]
 gi|196042325|ref|ZP_03109601.1| ribonuclease III [Bacillus cereus NVH0597-99]
 gi|196047446|ref|ZP_03114658.1| ribonuclease III [Bacillus cereus 03BB108]
 gi|218904979|ref|YP_002452813.1| ribonuclease III [Bacillus cereus AH820]
 gi|225865830|ref|YP_002751208.1| ribonuclease III [Bacillus cereus 03BB102]
 gi|227813243|ref|YP_002813252.1| ribonuclease III [Bacillus anthracis str. CDC 684]
 gi|228916486|ref|ZP_04080052.1| Ribonuclease 3 [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228928897|ref|ZP_04091929.1| Ribonuclease 3 [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|228935163|ref|ZP_04097990.1| Ribonuclease 3 [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228947568|ref|ZP_04109858.1| Ribonuclease 3 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229092891|ref|ZP_04224025.1| Ribonuclease 3 [Bacillus cereus Rock3-42]
 gi|229123363|ref|ZP_04252567.1| Ribonuclease 3 [Bacillus cereus 95/8201]
 gi|229186089|ref|ZP_04313258.1| Ribonuclease 3 [Bacillus cereus BGSC 6E1]
 gi|229599971|ref|YP_002868086.1| ribonuclease III [Bacillus anthracis str. A0248]
 gi|254683443|ref|ZP_05147303.1| ribonuclease III [Bacillus anthracis str. CNEVA-9066]
 gi|254721380|ref|ZP_05183169.1| ribonuclease III [Bacillus anthracis str. A1055]
 gi|254735887|ref|ZP_05193593.1| ribonuclease III [Bacillus anthracis str. Western North America
           USA6153]
 gi|254739520|ref|ZP_05197217.1| ribonuclease III [Bacillus anthracis str. Kruger B]
 gi|254751172|ref|ZP_05203211.1| ribonuclease III [Bacillus anthracis str. Vollum]
 gi|254756720|ref|ZP_05208749.1| ribonuclease III [Bacillus anthracis str. Australia 94]
 gi|38372420|sp|Q81WI8|RNC_BACAN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|81395098|sp|Q6HEW6|RNC_BACHK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|226735366|sp|B7JJT6|RNC_BACC0 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807235|sp|C3P5Q0|RNC_BACAA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807236|sp|C3L778|RNC_BACAC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807237|sp|C1EP73|RNC_BACC3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|30258496|gb|AAP27715.1| ribonuclease III [Bacillus anthracis str. Ames]
 gi|47504426|gb|AAT33102.1| ribonuclease III [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180626|gb|AAT56002.1| ribonuclease III [Bacillus anthracis str. Sterne]
 gi|49329970|gb|AAT60616.1| ribonuclease III [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|164710971|gb|EDR16540.1| ribonuclease III [Bacillus anthracis str. A0488]
 gi|167510022|gb|EDR85437.1| ribonuclease III [Bacillus anthracis str. A0193]
 gi|167527913|gb|EDR90729.1| ribonuclease III [Bacillus anthracis str. A0442]
 gi|170666390|gb|EDT17172.1| ribonuclease III [Bacillus anthracis str. A0465]
 gi|172079908|gb|EDT65015.1| ribonuclease III [Bacillus anthracis str. A0174]
 gi|190562755|gb|EDV16721.1| ribonuclease III [Bacillus anthracis Tsiankovskii-I]
 gi|195991516|gb|EDX55482.1| ribonuclease III [Bacillus cereus W]
 gi|196021754|gb|EDX60449.1| ribonuclease III [Bacillus cereus 03BB108]
 gi|196026847|gb|EDX65478.1| ribonuclease III [Bacillus cereus NVH0597-99]
 gi|218539426|gb|ACK91824.1| ribonuclease III [Bacillus cereus AH820]
 gi|225790989|gb|ACO31206.1| ribonuclease III [Bacillus cereus 03BB102]
 gi|227006213|gb|ACP15956.1| ribonuclease III [Bacillus anthracis str. CDC 684]
 gi|228597265|gb|EEK54916.1| Ribonuclease 3 [Bacillus cereus BGSC 6E1]
 gi|228660139|gb|EEL15775.1| Ribonuclease 3 [Bacillus cereus 95/8201]
 gi|228690513|gb|EEL44296.1| Ribonuclease 3 [Bacillus cereus Rock3-42]
 gi|228812088|gb|EEM58419.1| Ribonuclease 3 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228824528|gb|EEM70333.1| Ribonuclease 3 [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228830704|gb|EEM76309.1| Ribonuclease 3 [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|228843065|gb|EEM88147.1| Ribonuclease 3 [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|229264379|gb|ACQ46016.1| ribonuclease III [Bacillus anthracis str. A0248]
          Length = 245

 Score =  238 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 5/209 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +   +++IG  F +  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 19  FKLFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A EL   S + +             ++ ADV E+
Sbjct: 79  KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            I ALYLD G+E    F+ +    +  +       D K++LQE          EY++   
Sbjct: 139 FIGALYLDQGLETVWGFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQE 198

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            GP H+  F   V ++ +A   G   SK+
Sbjct: 199 KGPAHNREFVSRVTLNNVALGLGSGKSKK 227


>gi|223043742|ref|ZP_03613785.1| ribonuclease III [Staphylococcus capitis SK14]
 gi|222442839|gb|EEE48941.1| ribonuclease III [Staphylococcus capitis SK14]
          Length = 245

 Score =  238 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 63/213 (29%), Positives = 98/213 (46%), Gaps = 5/213 (2%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           G+ F N  L ++A +HSS  + +     +  ERLEFLGD +L L +S  LF+      EG
Sbjct: 25  GFNFNNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLFDKHPHLPEG 84

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
            L+    ++V   +    A ++DL   I +     K       S+ +D  E+ + ALYLD
Sbjct: 85  NLTKMRATIVCEPSLVIFANKIDLNELILLGKGEEKTGGRTRPSLISDAFEAFVGALYLD 144

Query: 130 GGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
            G++    F +K               D KT+ QE+ H +      Y++    GP H   
Sbjct: 145 QGLDTVWKFAEKVIFPYVEDDELVGVVDFKTQFQEYVHRQNKGDVTYRLIKEEGPAHHRL 204

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           FT  V +   A A+G   +K+ +EQ AA +  K
Sbjct: 205 FTSEVILENNAVAEGKGKTKKESEQKAAEQAYK 237


>gi|315638039|ref|ZP_07893224.1| ribonuclease III [Campylobacter upsaliensis JV21]
 gi|315481887|gb|EFU72506.1| ribonuclease III [Campylobacter upsaliensis JV21]
          Length = 224

 Score =  238 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 124/222 (55%), Gaps = 4/222 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +   LE ++ Y F ++ LL  ALTH S   +Y  + ERLEFLGD +L L++   LF+ F 
Sbjct: 3   KLELLEAKLNYKFKDQKLLIYALTHKSAKKNY--NNERLEFLGDAVLDLVVGEFLFHKFK 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EG+LS    +LV+ ++ +++A  L+L +FI +S   + +      SI +D  E+LI 
Sbjct: 61  NEAEGDLSKLRAALVNEKSFAKIATSLNLGAFIFMSIAEQNNGGKTKPSILSDAFEALIG 120

Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           AL+L+ G   A     +  ++    + +    +D KT+LQE   AK G+TPEY+     G
Sbjct: 121 ALHLEAGFIKAKEIALRLIEENFPNIDAKSLFKDYKTKLQEITQAKMGLTPEYETLRAFG 180

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           PDH   F + + + G   A+ +  SK+ A+Q+AA   L++ G
Sbjct: 181 PDHQKSFEIALNLEGKEMARAIASSKKEAQQMAAKLTLEKLG 222


>gi|322373156|ref|ZP_08047692.1| ribonuclease III [Streptococcus sp. C150]
 gi|321278198|gb|EFX55267.1| ribonuclease III [Streptococcus sp. C150]
          Length = 229

 Score =  238 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 71/213 (33%), Positives = 106/213 (49%), Gaps = 8/213 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M+ L    LE+  G  F+ + LLE A TH+S ++ ++       ERLEFLGD  L L+IS
Sbjct: 1   MNQLE-QKLEQDFGIVFSQKDLLETAFTHTSYANEHRLLNISHNERLEFLGDAALQLVIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+N + +  EGE+S   +++V  E+ +   +      FIR+     K       +I  
Sbjct: 60  VYLYNRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQFIRLGKGEEKSGGRERATILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D+ E+ + ALYLD G+     F++K    + ++ G F R  D KTELQE       V   
Sbjct: 120 DLWEAFLGALYLDQGLPAVEKFLNKVMIPK-VEEGNFDRVTDYKTELQERLQVNGTVDIT 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           Y V   SGP H   FT+ V + G   + G+  S
Sbjct: 179 YTVIEESGPAHAKEFTMQVAVDGKELSTGLGKS 211


>gi|238926905|ref|ZP_04658665.1| ribonuclease III [Selenomonas flueggei ATCC 43531]
 gi|238885139|gb|EEQ48777.1| ribonuclease III [Selenomonas flueggei ATCC 43531]
          Length = 238

 Score =  238 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 78/222 (35%), Positives = 117/222 (52%), Gaps = 8/222 (3%)

Query: 1   MSALRYSTLEKR---IGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLL 54
           M+  R + L +    +   FA+ SLLE+ALTH S  +  +E     ERLEFLGD +L L 
Sbjct: 5   MTETRRAELVRLSAFLDVDFADLSLLEEALTHPSYVNEARERATHNERLEFLGDAVLELA 64

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
           IST L+  +    EGEL+    SLV +ET +++AR L L + +R+         +   + 
Sbjct: 65  ISTYLYVAYPHCSEGELTKMRASLVQSETLARLARRLHLGAHLRMGRGEMLGGGAERQNN 124

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVT 172
             +V E++I A+YLD G + A ++V + + +    L+     +D KT LQE+        
Sbjct: 125 LENVFEAVIGAVYLDRGWDAAYSYVQRQFTEEVTRLRQEHAVQDYKTMLQEYVQGHRHEC 184

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
             Y+    SGPDHD RFT+ V I      +G+  SK+ AEQ 
Sbjct: 185 IAYEQVAESGPDHDKRFTMRVRIGMEVLGEGIGRSKKEAEQH 226


>gi|218248059|ref|YP_002373430.1| Ribonuclease III [Cyanothece sp. PCC 8801]
 gi|257060612|ref|YP_003138500.1| ribonuclease III [Cyanothece sp. PCC 8802]
 gi|218168537|gb|ACK67274.1| Ribonuclease III [Cyanothece sp. PCC 8801]
 gi|256590778|gb|ACV01665.1| ribonuclease III [Cyanothece sp. PCC 8802]
          Length = 225

 Score =  238 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 70/219 (31%), Positives = 102/219 (46%), Gaps = 11/219 (5%)

Query: 16  AFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            F N+ LL+ ALTH S  + +    E  ERLEFLGD IL  ++S  L+  +    E +L+
Sbjct: 6   QFKNQELLDCALTHRSYINEHFEVTEHNERLEFLGDAILQFVVSEELYRRYPELTEAQLT 65

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
              + LV     +Q AR LDL   + +     KD      ++ +D  E++I A +LD GI
Sbjct: 66  RLRSKLVDEPQLAQFARTLDLGQLMYLGQGAIKDGGRENPALLSDAFEAIIGAYFLDAGI 125

Query: 133 EVAGTFVDKYWKQRALKS--------GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           E    FV   +K+                  D K  LQ+WA  ++   PEY +  +SGPD
Sbjct: 126 EAVQYFVRSLFKEAIDNLVLPESRTVSPSIIDVKNRLQQWALEQYKQVPEYFLIEQSGPD 185

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           H   F   V I+G     G    K+ A + AA + L + 
Sbjct: 186 HAKEFVFGVRINGQVLGTGKGRRKQEATKAAAQDALDKL 224


>gi|294102050|ref|YP_003553908.1| ribonuclease III [Aminobacterium colombiense DSM 12261]
 gi|293617030|gb|ADE57184.1| ribonuclease III [Aminobacterium colombiense DSM 12261]
          Length = 240

 Score =  238 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 115/224 (51%), Gaps = 5/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNH 62
             ++ ++R+GY F+ + +L++ALTH+S +H        ERLEFLGD +L L++S  LFN 
Sbjct: 15  ELASFQERLGYLFSKKEILQEALTHASYAHEKGLHFHNERLEFLGDAVLELIVSANLFNG 74

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +    EG L+   ++LV     S   + + L   IR+   L +   S   SI AD  E++
Sbjct: 75  YPDVDEGTLTRYRSNLVCKNALSVWGKSIGLPQIIRLGKGLEQQGAS--ASIIADTSEAV 132

Query: 123 IAALYLDGGIEVAGTFVDKY-WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + A++ DGG   A   V +Y + Q  + +     D K+ +QE    +    P Y V    
Sbjct: 133 LGAVFSDGGFAAAQNVVRRYLFFQSNINAYDKNSDPKSLIQEETQKRGLGQPCYVVISTE 192

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           GP H P FTV ++I G     G   S + AE +AA   LK+ G+
Sbjct: 193 GPPHMPIFTVQLKIDGQLYGSGQGHSIKVAETLAAQRALKQVGL 236


>gi|308234556|ref|ZP_07665293.1| ribonuclease III [Atopobium vaginae DSM 15829]
 gi|328944154|ref|ZP_08241619.1| ribonuclease III [Atopobium vaginae DSM 15829]
 gi|327492123|gb|EGF23897.1| ribonuclease III [Atopobium vaginae DSM 15829]
          Length = 233

 Score =  238 bits (607), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 76/224 (33%), Positives = 111/224 (49%), Gaps = 3/224 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNH 62
           R    E+ I Y F N+ L++ A+TH S         SYERLEFLGD ILG +++T +F  
Sbjct: 6   RIKHAEQIIEYTFENKRLIQAAITHPSAVEGLPVSASYERLEFLGDSILGAIVATDMFEK 65

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L+    SLVS +T S VA EL +   I      +       TS   +V ESL
Sbjct: 66  FPGMDEGALTRMKISLVSGKTLSMVAEELGIGECIIFGDSEKGTGVRGFTSALENVYESL 125

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + ALYL+ G E    F+ +      + +  K     K+ LQE    +F + P Y++   +
Sbjct: 126 VGALYLEAGYEPTVKFIRRTLTPYMVPELAKHPISPKSRLQEVCQKRFHIAPVYELEDET 185

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           GP H P+FT  V + G    +G   SK+ ++ +AA   L +  +
Sbjct: 186 GPAHAPQFTSAVFVDGELMGRGTGSSKKESQSIAALSALDKLDV 229


>gi|303326944|ref|ZP_07357386.1| ribonuclease III [Desulfovibrio sp. 3_1_syn3]
 gi|302862932|gb|EFL85864.1| ribonuclease III [Desulfovibrio sp. 3_1_syn3]
          Length = 253

 Score =  237 bits (606), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 76/219 (34%), Positives = 110/219 (50%), Gaps = 5/219 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFD 64
            LE+++G+ FA   LL+ ALTHSS ++ Y   Q   ER EFLGD +L L +S  LF  F 
Sbjct: 18  ALEEKLGHVFARPELLDLALTHSSWANEYSGGQHHNERQEFLGDAVLELCVSWELFRRFP 77

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            A+EGEL+     LVS  + ++ ARE  L S +++     +       S+ +DV+E+++A
Sbjct: 78  EAREGELTKLRARLVSTVSLAERAREFGLDSLLKLGKGEERQGGRSRDSVLSDVLEAVLA 137

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+Y DGG   A   V   +     ++     R+D KT LQE A   F   P Y      G
Sbjct: 138 AVYEDGGFTAAQAAVAHIFAPHWPRAAGEPQRKDYKTRLQEVAQQLFRERPVYVQLASHG 197

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           P+H   F V + +           S + AEQ AA + L 
Sbjct: 198 PEHAKIFEVSLHLPDGREFTASGTSCKKAEQEAARQALN 236


>gi|67459568|ref|YP_247192.1| ribonuclease III [Rickettsia felis URRWXCal2]
 gi|75536032|sp|Q4UKA8|RNC_RICFE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|67005101|gb|AAY62027.1| Ribonuclease III [Rickettsia felis URRWXCal2]
          Length = 225

 Score =  237 bits (606), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 114/222 (51%), Gaps = 5/222 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +  LEK +GY+F N+ LL +AL+H S+   ++    + YERLEFLGD +L L+++ +LF 
Sbjct: 4   FEKLEKLLGYSFKNKELLIEALSHPSLRQHHEYKDDKDYERLEFLGDAVLNLVVTEILFK 63

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +F +  EG L+   + LV  ET   V  +L L  +I ++            +   +  E+
Sbjct: 64  NFANYNEGNLAKIRSYLVCKETICVVGTKLTLKDYIIMTHGEEVAGGRDNPNNIENATEA 123

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           LIAA+YLD  IE     + K W +          D KT LQEWA A     P Y++  R 
Sbjct: 124 LIAAIYLDSNIETTRNIIGKLWAEFIKIQNLTDYDPKTALQEWAQASSHHLPIYRLIKRE 183

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           G  H   FTV+V++       G   S + AE+ AA ++L + 
Sbjct: 184 GAAHSSTFTVLVKVKDYKQ-IGTGHSIKEAEKNAARKLLHKL 224


>gi|303233301|ref|ZP_07319972.1| ribonuclease III [Atopobium vaginae PB189-T1-4]
 gi|302480601|gb|EFL43690.1| ribonuclease III [Atopobium vaginae PB189-T1-4]
          Length = 229

 Score =  237 bits (606), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 76/224 (33%), Positives = 112/224 (50%), Gaps = 3/224 (1%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLF 60
             R   +++ + Y F++ +L + ALTH S         SYERLEFLGD ILG +I+  +F
Sbjct: 4   TERVCRVQEILDYTFSDITLAKAALTHPSAVEGQPVSASYERLEFLGDSILGAIIACDMF 63

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG L+    SLVS +T SQVA EL +A  I      R      M S   +V E
Sbjct: 64  EQFPDMDEGALTRMKTSLVSGQTLSQVADELGIAPLIVFGESERGTGTRGMHSALENVYE 123

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           +L+ A+YLDGG +    F+ +   +  +          K+ELQE++   +   P Y++  
Sbjct: 124 ALVGAMYLDGGYDPTAAFIRRTLAEYMVPQRAAHPISPKSELQEFSQRIYHEMPVYELEE 183

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            SGP H P FT  V ++G    +G   SK+ ++  AA   L + 
Sbjct: 184 ESGPAHLPHFTTAVYVNGELVGRGSGTSKKESQTQAAQAALDKL 227


>gi|298571391|gb|ADI87733.1| RNase III [uncultured Nitrospirae bacterium MY3-5B]
          Length = 263

 Score =  237 bits (606), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 73/236 (30%), Positives = 115/236 (48%), Gaps = 17/236 (7%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTLLFN 61
            ++LE+ I Y F ++ LL +++TH S  H      Q   ER+EFLGD +LGL IS  L+ 
Sbjct: 7   LTSLEQSINYYFNDKGLLIESVTHRSYYHECLDKSQPYNERVEFLGDAVLGLAISETLYT 66

Query: 62  HFDSA-----------KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110
                            E E+S   + LVS +  SQ+A++++L +++++           
Sbjct: 67  EHVFCRKNDKTIHTIFSESEMSRLKSYLVSKKILSQLAQDINLGNYLKLGKGEEMTGGRE 126

Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAK 168
             S+ A+ +E++  A++LDGG E A   +   ++     + S     D KTELQE +   
Sbjct: 127 KLSLLANTLEAIFGAVFLDGGYEAAKAVILGLYQPILTQILSNHTSFDYKTELQEISQKL 186

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           F   PEYK+   SG DHD  F   V + G     G   +K+ A+  AA   L+  G
Sbjct: 187 FSSLPEYKLVLESGNDHDKDFVYEVYLDGKCMGTGSGKNKKTAQSAAACMALETLG 242


>gi|86158075|ref|YP_464860.1| ribonuclease III [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774586|gb|ABC81423.1| RNAse III [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 385

 Score =  237 bits (606), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 75/212 (35%), Positives = 116/212 (54%), Gaps = 6/212 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHF 63
            LE R+G A A+R     ALTH S  + ++E      ERLEFLGD ++ L +S  L   F
Sbjct: 27  ALEARLGLAVADREAALAALTHKSYVNEHREDGLQDNERLEFLGDAVIDLAVSHRLMERF 86

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            SA+EG+LS    ++V  +  +++AR LDL + +R+            +S+ AD +E++I
Sbjct: 87  PSAREGDLSKMRAAVVDEQGLAEMARTLDLGALLRLGRGEELTGGRQKSSLLADAMEAVI 146

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+Y   G+    +FVD++  +   +  +G   RD KT+LQE + ++   TP Y+V    
Sbjct: 147 AAIYRGQGLPAVLSFVDRFLGEAFARAAAGTLDRDFKTQLQELSQSRLRATPRYRVVAEH 206

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
           GPDH   F V  ++ G    +G   SK+ AEQ
Sbjct: 207 GPDHSKTFEVETDLRGEVMGRGAGRSKKDAEQ 238


>gi|170709347|ref|ZP_02899762.1| ribonuclease III [Bacillus anthracis str. A0389]
 gi|170125742|gb|EDS94654.1| ribonuclease III [Bacillus anthracis str. A0389]
          Length = 245

 Score =  237 bits (606), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 61/209 (29%), Positives = 98/209 (46%), Gaps = 5/209 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +   +++IG  F +  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 19  FKLFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A EL   S + +             ++ ADV E+
Sbjct: 79  KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            I A YLD G+E    F+ +    +  +       D K++LQE          EY++   
Sbjct: 139 FIGAFYLDQGLETVWGFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQE 198

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            GP H+  F   V ++ +A   G   SK+
Sbjct: 199 KGPAHNREFVSRVTLNNVALGLGSGKSKK 227


>gi|253699690|ref|YP_003020879.1| ribonuclease III [Geobacter sp. M21]
 gi|251774540|gb|ACT17121.1| ribonuclease III [Geobacter sp. M21]
          Length = 232

 Score =  237 bits (606), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 88/232 (37%), Positives = 125/232 (53%), Gaps = 8/232 (3%)

Query: 1   MSALRYSTLEK---RIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLIS 56
           M+ +++  LE    R+GY F +R LL +ALTH +  +       +RLEF GD +L  L+S
Sbjct: 1   MNDMQHDPLEGIEGRLGYRFRDRGLLAEALTHRTYVNEAGGRDNQRLEFFGDAVLDFLLS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
            +L   F  ++EGEL+    +LV   + +++A ELDL   +R+     +       S+ A
Sbjct: 61  DMLLVRFPDSREGELTRIRAALVDEASLAKIAIELDLGQALRLGRGEERGGGRQKRSLLA 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEY 175
           D  E+L+AALYLDGG++ A   V+  +            RDAKTELQE A    G  P Y
Sbjct: 121 DAFEALLAALYLDGGLDPARRVVEALFAPLLSSRDLLSGRDAKTELQEKARLVKGELPRY 180

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKREG 224
           ++   SGPDHD RFTV V +      +G+  SK+ AEQ AA      LK EG
Sbjct: 181 QLKEVSGPDHDKRFTVEVYLGEELMGEGVGKSKKEAEQDAARAAFLLLKGEG 232


>gi|229162785|ref|ZP_04290742.1| Ribonuclease 3 [Bacillus cereus R309803]
 gi|228620667|gb|EEK77536.1| Ribonuclease 3 [Bacillus cereus R309803]
          Length = 245

 Score =  237 bits (605), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 62/209 (29%), Positives = 98/209 (46%), Gaps = 5/209 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +   ++ IG  F +  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 19  FKVFQEEIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A EL   S + +             ++ ADV E+
Sbjct: 79  KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            I ALYLD G+E    F+ +    +  +       D K++LQE          EY++   
Sbjct: 139 FIGALYLDQGLETVWGFLKEVVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQE 198

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            GP H+  F   V ++ +A   G   SK+
Sbjct: 199 KGPAHNREFVSRVTLNNVALGLGSGKSKK 227


>gi|299144133|ref|ZP_07037213.1| ribonuclease III [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518618|gb|EFI42357.1| ribonuclease III [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 233

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 107/226 (47%), Gaps = 6/226 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
             S L   + Y F N   +  ALTHSS  + +      S ERLEFLGD +L L+I    +
Sbjct: 4   NVSILLSLLEYEFKNDKYINIALTHSSYINEHNLKDTVSNERLEFLGDAVLDLIIGEYFY 63

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
               + KEG LS   + +V+  +  ++A  + +  F+       K+  +   S  +D +E
Sbjct: 64  YSHKNLKEGSLSKLRSKVVNENSLYKIATNISIGDFMYFGKGEIKNKGNLRESTLSDCLE 123

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVT 178
           +LI A+Y+DGG++     + + +  R ++    +   D KT LQE          +Y + 
Sbjct: 124 ALIGAIYIDGGLDAVRKVILRLFHDRIMEVENLKSLEDYKTMLQECIQRNKMGNIKYVIY 183

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              GP +D  F   V I+ +    G   +K+++EQ+AA   L R G
Sbjct: 184 DEKGPSNDKVFYSNVLINDIIIGNGYGKTKKSSEQLAAKNALIRIG 229


>gi|228477722|ref|ZP_04062351.1| ribonuclease III [Streptococcus salivarius SK126]
 gi|228250611|gb|EEK09822.1| ribonuclease III [Streptococcus salivarius SK126]
          Length = 229

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 67/213 (31%), Positives = 104/213 (48%), Gaps = 8/213 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M+ L    LE+  G  F+ + LLE A TH+S ++ ++       ERLEFLGD  L L+IS
Sbjct: 1   MNQLE-QKLEQDFGIVFSQKDLLETAFTHTSYANEHRLLNISHNERLEFLGDAALQLVIS 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  + +  EGE+S   +++V  E+ +   +      +IR+     K       +I  
Sbjct: 60  VYLYKRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQYIRLGKGEEKSGGRERATILG 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D+ E+ + ALYLD G+     F+++    + ++ G F R  D KT LQE       V   
Sbjct: 120 DLWEAFLGALYLDQGLPAVEKFLNQVMIPQ-VEKGNFDRVTDYKTALQERLQVNGTVDIT 178

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           Y V   SGP H   FT+ V + G   + G+  S
Sbjct: 179 YTVIDESGPAHAKEFTMQVAVDGKELSTGLGKS 211


>gi|229820101|ref|YP_002881627.1| ribonuclease III [Beutenbergia cavernae DSM 12333]
 gi|229566014|gb|ACQ79865.1| ribonuclease III [Beutenbergia cavernae DSM 12333]
          Length = 252

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 71/219 (32%), Positives = 102/219 (46%), Gaps = 6/219 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH 62
             + +E+R+G    +  L   A TH S +H      + ERLEFLGD +LG++I+  LF  
Sbjct: 16  SLAAVEERLGVGI-DPELAVLAFTHRSFAHEAGGIPTNERLEFLGDSVLGVVITDHLFRS 74

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
              + EGEL+    + VS    + VAREL L   + +             SI +D +E++
Sbjct: 75  RPDSSEGELAKMRAACVSQRALAVVARELRLGEHLLLGKGESATGGRDKDSILSDTLEAV 134

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFR 180
           I A+YL  G+EV    + +        + +     D KT LQE +       P Y V   
Sbjct: 135 IGAVYLTNGLEVVRDVLLRLLGPSLAVAAELGAGLDWKTSLQELSAELGLGAPLYDVDGV 194

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            GPDHD RFT  V I+      G   +K+ AEQ AA   
Sbjct: 195 -GPDHDRRFTAHVVIAERVWGSGTGSAKKHAEQEAARTA 232


>gi|269468620|gb|EEZ80264.1| dsRNA-specific ribonuclease [uncultured SUP05 cluster bacterium]
          Length = 221

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 78/220 (35%), Positives = 118/220 (53%), Gaps = 6/220 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             LE++I Y F + SLL+ ALTH S+    + + ERLEFLGD ILGL+IS  L+  F   
Sbjct: 2   KKLEQKIDYQFKDISLLKLALTHRSVG---KNNNERLEFLGDSILGLVISRELYKRFTHV 58

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+LS   + LV  +T +Q+A  LDL++ + + S   K       SIQADVVE++  A+
Sbjct: 59  DEGKLSRLRSHLVRGQTLAQLASTLDLSNILILGSGELKSGGFRRESIQADVVEAIFGAV 118

Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           +LD   +   T + K +K+R   +      +D KT+LQE+   +    P+Y++    G D
Sbjct: 119 FLDSDFDTVNTVILKLYKERLDIINPNDSLKDFKTQLQEYLQKRGNALPKYELIKTVGKD 178

Query: 185 HDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223
           H+  FT+   +       +    S + AEQ  A  +L R 
Sbjct: 179 HNAVFTINCSLQDQNMKVKQKATSIKRAEQSCAQALLDRL 218


>gi|152976215|ref|YP_001375732.1| ribonuclease III [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|189043291|sp|A7GRH9|RNC_BACCN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|152024967|gb|ABS22737.1| Ribonuclease III [Bacillus cytotoxicus NVH 391-98]
          Length = 245

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 61/209 (29%), Positives = 99/209 (47%), Gaps = 5/209 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +   ++++G  F N  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 19  FRAFQQKLGITFTNEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A EL   S + +             ++ ADV E+
Sbjct: 79  KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            I ALYLD G++    F+ +    +  +       D K++LQE          EY++   
Sbjct: 139 FIGALYLDQGLDTVWGFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQE 198

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            GP H+  F   V ++ +A   G   SK+
Sbjct: 199 KGPAHNREFVSRVTLNSVALGLGSGKSKK 227


>gi|239906016|ref|YP_002952755.1| ribonuclease III [Desulfovibrio magneticus RS-1]
 gi|239795880|dbj|BAH74869.1| ribonuclease III [Desulfovibrio magneticus RS-1]
          Length = 243

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 72/217 (33%), Positives = 111/217 (51%), Gaps = 5/217 (2%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           +G+ FA  +LL  ALTHSS ++   E     ERLEFLGD +L L +S  LF+ F  A EG
Sbjct: 22  LGHEFATPALLATALTHSSCANERGEGTRHNERLEFLGDAVLELCVSEELFSLFPEAPEG 81

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           EL++  + LV+  + + +A  L LA  +R+             S+ +DV E+++ A++LD
Sbjct: 82  ELTLLRSQLVNEASLAAMALRLGLAGHVRLGRGEENQGGRSRPSLLSDVFEAVVGAIFLD 141

Query: 130 GGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           GG   A  FV + +  +     +    +D K+ LQE+        P Y +   +GP+HD 
Sbjct: 142 GGYTAARAFVSRTFDGQWPERPAAPKIKDFKSRLQEFTQRTHKARPVYALLGSAGPEHDK 201

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           RF V + +        ++ S + AEQ AA   L   G
Sbjct: 202 RFEVRLTLPCGREILAVEKSVKKAEQQAARLALTVLG 238


>gi|242280465|ref|YP_002992594.1| ribonuclease III [Desulfovibrio salexigens DSM 2638]
 gi|242123359|gb|ACS81055.1| ribonuclease III [Desulfovibrio salexigens DSM 2638]
          Length = 234

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 74/222 (33%), Positives = 117/222 (52%), Gaps = 5/222 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLF 60
             +S L++ I Y F+    L  ALTHSS ++   E     ERLEFLGD +L L ++  LF
Sbjct: 3   EDFSRLQQGIHYRFSQVKHLATALTHSSWANEQPEPVEDNERLEFLGDAVLELCVTEELF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EG+L+   + LV  ++ + +ARELD+  F+++            +S+ AD +E
Sbjct: 63  KRFKGAHEGQLTKIRSKLVKEKSLATIARELDINDFLKLGRGEEAQGGRNRSSLLADAME 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A++LDGG   A  F+ + +  +   + K    +D K++LQE   A+F   P Y +T
Sbjct: 123 AVIGAVFLDGGYAEAQKFIMRIFANKWPATFKIESSKDFKSKLQEVTQARFKERPTYVLT 182

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
              GP+H+  F V + +           S + AEQ AAA+ L
Sbjct: 183 GTKGPEHEKIFMVNLNLPDGKSFDSEGSSLKKAEQTAAAKAL 224


>gi|222151066|ref|YP_002560220.1| ribonuclease III [Macrococcus caseolyticus JCSC5402]
 gi|222120189|dbj|BAH17524.1| ribonuclease III [Macrococcus caseolyticus JCSC5402]
          Length = 242

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 60/223 (26%), Positives = 96/223 (43%), Gaps = 5/223 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58
            ++ + +   +     +  L  +A +HSS  + ++    +  ERLEFLGD +L L++S  
Sbjct: 12  KVKLNKVLTHLDIIPNDIELYVQAFSHSSFINDFKLDKNKDNERLEFLGDAVLELMVSQY 71

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L+       EG L+    ++V   +    A+ L     I +     K       S+ ADV
Sbjct: 72  LYQQHRDLPEGRLTKLRAAIVCEPSLVTFAKMLKFDQLILLGKGEEKTGGRTRPSLIADV 131

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKV 177
            E+ + ALYLD G +V   F + Y      +       D KT LQE+ H    +   Y++
Sbjct: 132 FEAFVGALYLDQGHDVTKRFFNSYIFPAITEDLLHGLIDYKTCLQEYIHKTKNLQVTYRL 191

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
               GP H   FT  V +       G   +K+ +EQ AA   L
Sbjct: 192 VKEEGPAHFKAFTSEVYVEDKVIGTGTGRTKKESEQQAAQTAL 234


>gi|258544604|ref|ZP_05704838.1| ribonuclease III [Cardiobacterium hominis ATCC 15826]
 gi|258520146|gb|EEV89005.1| ribonuclease III [Cardiobacterium hominis ATCC 15826]
          Length = 221

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 73/217 (33%), Positives = 112/217 (51%), Gaps = 7/217 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE+ + Y F + +LL +ALTH S      +  ERLEFLGD +L  + S  ++ +     E
Sbjct: 4   LEQALNYRFTDTALLTRALTHRS---HSAKHNERLEFLGDALLETISSIWIYQNRRDVPE 60

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+L+    ++VS E  + +AR L+L   + + S   K   +   SI AD VE+LIAA+YL
Sbjct: 61  GDLTRLRATIVSGENLAAIARRLNLGQHLHLGSGELKSGGARRNSILADAVEALIAAVYL 120

Query: 129 DGGIEVAGTFVDKYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           D              K       ++    +DAKT+LQE+   +    P+Y++T  SGP+H
Sbjct: 121 DSDYPTCEHITLALLKDDLSALPQTATRLKDAKTQLQEYLQGRGLPLPDYQITEESGPEH 180

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              F +    SG   A     S++ AEQ AAA++L +
Sbjct: 181 AREFQIEAT-SGDYRAIAHGSSRKKAEQQAAADLLAQ 216


>gi|198283249|ref|YP_002219570.1| Ribonuclease III [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218665431|ref|YP_002425832.1| ribonuclease III [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247770|gb|ACH83363.1| Ribonuclease III [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218517644|gb|ACK78230.1| ribonuclease III [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 226

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 73/220 (33%), Positives = 109/220 (49%), Gaps = 5/220 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
             +L++ +GY F  +SLL +ALTH S    +    ERLEFLGD  L  +++  LF  F  
Sbjct: 4   LESLQQSVGYQFREQSLLLQALTHRSAGARH---NERLEFLGDAALNFVVAAKLFARFPK 60

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS     LV  ET +++A ++ LA  + +     +   +   SI+AD +E++I A
Sbjct: 61  VSEGDLSRMRARLVREETLAEIAGKIALADSLILGPGEIRSGGARRDSIRADALEAVIGA 120

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            +LDGG   A   V +  +        G+  RD KT LQE+   +    P Y      G 
Sbjct: 121 AFLDGGFGAAERIVAQLVEPLMTDDLGGEELRDPKTRLQEFLQGQGRPVPVYTTVAEKGQ 180

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            H+ RF     + G    +  D S+R AEQ AAA +L + 
Sbjct: 181 AHERRFVARCSVPGAEATEAEDGSRRKAEQQAAALMLAQL 220


>gi|323700157|ref|ZP_08112069.1| ribonuclease III [Desulfovibrio sp. ND132]
 gi|323460089|gb|EGB15954.1| ribonuclease III [Desulfovibrio desulfuricans ND132]
          Length = 227

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 114/222 (51%), Gaps = 4/222 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61
           +  + L+  I + F     LE ALTHSS ++     E  ERLEFLGD +L L IS   F 
Sbjct: 1   MDTAALQDCIHHRFGQVKFLETALTHSSFANEQDGFEDNERLEFLGDAVLELCISEEGFK 60

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +A EG+L+   + LV  ++ + +AREL+L  FIR+             ++ AD  E+
Sbjct: 61  RYPTAHEGQLTRIRSQLVKEQSLAGIARELELDRFIRLGRGEELQGGRERDALLADAFEA 120

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           L+ A++LDGG E A   +   ++ +  A       +D K+ LQE A   F   P Y ++ 
Sbjct: 121 LLGAVFLDGGFEAARRTILDIFEDQWPARAMLPETKDYKSRLQEVAQDVFRDRPVYVLSG 180

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            SGP+H+  F V V +      +G+  S + AEQ AA   L+
Sbjct: 181 TSGPEHEKLFEVDVTLPNGERFRGLGTSVKRAEQEAARMGLE 222


>gi|160900693|ref|YP_001566275.1| ribonuclease III [Delftia acidovorans SPH-1]
 gi|238687167|sp|A9BNJ5|RNC_DELAS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|160366277|gb|ABX37890.1| Ribonuclease III [Delftia acidovorans SPH-1]
          Length = 227

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 83/224 (37%), Positives = 116/224 (51%), Gaps = 7/224 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M  L  + L+ R+ + FA  +LL++A+TH S S    ++ ERLEFLGD +L L IS+LL+
Sbjct: 1   MPPL-LNALQLRLQHQFAEPALLQRAVTHRSFS---ADNNERLEFLGDSVLNLAISSLLY 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
               S  EG+LS    +LV   T  Q+A  L L   +R+     K       SI AD VE
Sbjct: 57  QRLSSMPEGDLSRVRANLVKEGTLHQIALRLQLPDLLRLGEGESKSGGKQRPSILADAVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI A+YLD G       V   ++   +        +DAKT LQEW   +    P+Y+V 
Sbjct: 117 ALIGAVYLDAGYAAGEKVVHHLFEGVDINPHMRAAEKDAKTALQEWLQGRRMKLPQYEVV 176

Query: 179 FRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221
             +G  H   F V   I+ L   A+G   S+RAAEQ AA  +L+
Sbjct: 177 ATTGAAHRQTFEVACAIAELQLQARGTGASRRAAEQTAATAMLE 220


>gi|254993548|ref|ZP_05275738.1| ribonuclease III [Listeria monocytogenes FSL J2-064]
          Length = 206

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 62/208 (29%), Positives = 105/208 (50%), Gaps = 7/208 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           M+  ++  L++ +G+ F +  LL++A THSS  + ++    +  ERLEFLGD +L L +S
Sbjct: 1   MN--QWEELQESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVS 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LFN +    EG ++    ++V   +  + A  +  + ++R+     K       ++ A
Sbjct: 59  NYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLA 118

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEY 175
           DV ES I ALYLD GI+   TF+++    +       +  D KT+LQE       V  EY
Sbjct: 119 DVFESFIGALYLDNGIDKVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIVQRDRDVLIEY 178

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQG 203
            +   +GP H+  F   V ++G    +G
Sbjct: 179 DILGETGPAHNKAFDAQVIVNGQVLGKG 206


>gi|154247804|ref|YP_001418762.1| ribonuclease III [Xanthobacter autotrophicus Py2]
 gi|154161889|gb|ABS69105.1| Ribonuclease III [Xanthobacter autotrophicus Py2]
          Length = 236

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 92/212 (43%), Positives = 130/212 (61%), Gaps = 5/212 (2%)

Query: 1   MSAL--RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLI 55
           M+A+    +++E+RIGY F +RS+LE AL+H S          SY+R+EFLGD +LG ++
Sbjct: 1   MNAVGSDLASVEERIGYRFRDRSILELALSHISAVKGEAPRLRSYQRMEFLGDHVLGSVV 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S +L+  F   +EGELS R   LV  E C++VA+++DL  FIR+     +       +I 
Sbjct: 61  SHMLYLAFPEGEEGELSRRLAELVREEACAEVAQDMDLGPFIRLGPGESQSGAHKRRAIL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
           ADV E ++AA++LDGG E A   V+++W+ R     +  RDAKT LQEWA A+    P Y
Sbjct: 121 ADVAEGVVAAVFLDGGYEAAHQVVERFWRPRLETPRRPLRDAKTVLQEWAQARGLPPPSY 180

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           +   RSGPDH PRFTV V++ GLA  Q    S
Sbjct: 181 REVTRSGPDHAPRFTVAVDLPGLASEQADGAS 212


>gi|157362928|ref|YP_001469695.1| ribonuclease III [Thermotoga lettingae TMO]
 gi|189043371|sp|A8F397|RNC_THELT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|157313532|gb|ABV32631.1| Ribonuclease III [Thermotoga lettingae TMO]
          Length = 238

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 118/224 (52%), Gaps = 9/224 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ-------ESYERLEFLGDRILGLLISTLLFN 61
             ++IGY F    LL  AL HSS +H  +       ES ERLEFLGD ++ LL++  L+ 
Sbjct: 12  FMEKIGYRFYEPELLYNALCHSSYAHEQKQRGRKDVESNERLEFLGDAVIDLLLAEYLYL 71

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F  A EG ++    ++ S E  +Q+AR+++L  ++ +             S+ AD++E+
Sbjct: 72  EFPEASEGVMAKVKAAIASEEALAQIARDINLGRYMFLGRGEEVSSGRERDSLLADMLEA 131

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           ++AA+Y+DGG+         Y+ +  + +  GK   D KT LQE   A++   PEY +  
Sbjct: 132 VVAAVYIDGGLTAVKKVFLSYFAKYAKEVVEGKIVFDYKTSLQEITQARYRKLPEYVLVN 191

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             GP H  +FTV + +SG   A G   S + AE+ AA   +++ 
Sbjct: 192 EKGPSHMKKFTVELRLSGKLIAVGEGPSIKEAEKEAARRAIEKL 235


>gi|270265300|ref|ZP_06193561.1| ribonuclease 3 [Serratia odorifera 4Rx13]
 gi|270040704|gb|EFA13807.1| ribonuclease 3 [Serratia odorifera 4Rx13]
          Length = 226

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F  + LL +ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFQQQELLLQALTHRSASSKH---NERLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSDIQNVERLILDWYRSRLDEISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 210


>gi|157371904|ref|YP_001479893.1| ribonuclease III [Serratia proteamaculans 568]
 gi|189043344|sp|A8GI25|RNC_SERP5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|157323668|gb|ABV42765.1| Ribonuclease III [Serratia proteamaculans 568]
          Length = 226

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 73/213 (34%), Positives = 110/213 (51%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F  + LL +ALTH S S  +    ERLEFLGD IL  +I+  LF
Sbjct: 1   MNPIVINRLQRKLGYTFQQQELLLQALTHRSASSKH---NERLEFLGDSILSFVIANALF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG++S    +LV   T +++ RE DL   +R+     K       SI AD VE
Sbjct: 58  QRFPRVDEGDMSRMRATLVRGNTLAEMGREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSDIQTVERLILDWYRSRLDEISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 210


>gi|85716284|ref|ZP_01047258.1| ribonuclease III [Nitrobacter sp. Nb-311A]
 gi|85696956|gb|EAQ34840.1| ribonuclease III [Nitrobacter sp. Nb-311A]
          Length = 266

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 91/203 (44%), Positives = 122/203 (60%), Gaps = 3/203 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           + +E+R+G+ FA+ SLL  A TH S    S    +SY+RLEFLGD +LGL+IS +L+  F
Sbjct: 44  AAIEQRLGHKFADISLLTTAFTHVSALKSSRGRSDSYQRLEFLGDHVLGLVISDMLYRAF 103

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EGELS R   LV  ETC  VAR LDL   +++ +           S+  D+ E++I
Sbjct: 104 PQADEGELSKRLADLVRKETCIDVARSLDLQEGVKLGAVGAGAGARLRRSVLGDICEAVI 163

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            A+YLDGG  VA  FV++ W +R  K  +  RD KT LQEWA  K   TP Y+   R+GP
Sbjct: 164 GAVYLDGGYAVAAAFVERNWLERMRKPVRPLRDPKTVLQEWAQGKGLPTPVYREVERTGP 223

Query: 184 DHDPRFTVVVEISGLAPAQGMDC 206
            HDPRF V VE+ GL  ++G+  
Sbjct: 224 HHDPRFRVAVELPGLEVSEGIGG 246


>gi|229031479|ref|ZP_04187479.1| Ribonuclease 3 [Bacillus cereus AH1271]
 gi|228729768|gb|EEL80748.1| Ribonuclease 3 [Bacillus cereus AH1271]
          Length = 245

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 5/209 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +   ++ IG  F++  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 19  FKVFQEEIGITFSDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A EL   S + +             ++ ADV E+
Sbjct: 79  KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            I ALYLD G+E    F+ +    +  +       D K++LQE          EY++   
Sbjct: 139 FIGALYLDQGLETVWGFLKEVVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQE 198

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            GP H+  F   V ++ +A   G   SK+
Sbjct: 199 KGPAHNREFVSRVTLNNVALGLGSGKSKK 227


>gi|114765524|ref|ZP_01444632.1| Ribonuclease III [Pelagibaca bermudensis HTCC2601]
 gi|114542117|gb|EAU45149.1| Ribonuclease III [Roseovarius sp. HTCC2601]
          Length = 227

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 86/203 (42%), Positives = 121/203 (59%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            LE+R+G+ F    LL +ALTHSS+S   +E  +RLEFLGDR+LGL+++  L     +A 
Sbjct: 9   ALEERLGHRFDRPELLRRALTHSSMSAPGREDNQRLEFLGDRVLGLVMAEALLADDRNAS 68

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG+L+ R+N+LV  ETC+ VARE+DL + +++             ++  D +E++IAA+Y
Sbjct: 69  EGQLAPRYNALVRKETCADVAREVDLGAALKLGRSEMMSGGRRKMALLGDAMEAVIAAVY 128

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           LD G E A   V + W  R  +  +  RDAKT LQEWA A+    P Y  T RSGPDH P
Sbjct: 129 LDAGFEAAKDLVRRLWGDRVTRVDEDARDAKTSLQEWAQARGMPPPAYVETARSGPDHAP 188

Query: 188 RFTVVVEISGLAPAQGMDCSKRA 210
            FT+   +S    AQ    +KR 
Sbjct: 189 VFTIEARLSSGETAQATAGAKRK 211


>gi|304310579|ref|YP_003810177.1| Ribonuclease III [gamma proteobacterium HdN1]
 gi|301796312|emb|CBL44520.1| Ribonuclease III [gamma proteobacterium HdN1]
          Length = 231

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 82/222 (36%), Positives = 109/222 (49%), Gaps = 5/222 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S L  RIGY F + +LL  ALTH S+S   Q + ERLEFLGD +L L+I   LF  F   
Sbjct: 5   SLLCSRIGYTFNDFNLLNLALTHRSVS--GQTNNERLEFLGDSVLNLIIGGELFTKFPQG 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           KEG+LS    SLV  ET +Q+  E  L  F+ +     K   +   S  AD VE++I A+
Sbjct: 63  KEGQLSRLRASLVRGETLAQIGGEFGLGEFLILGPGEHKSGGARRESTLADAVEAIIGAI 122

Query: 127 YLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           + + G   A   V +++  R  AL      +D KT LQE         PEY++   SG  
Sbjct: 123 FCESGYNEARKVVLRWFDSRIQALTLNDTVKDNKTRLQEILQHLKMGLPEYRILSVSGSS 182

Query: 185 HDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           H   F +   I+G      G   S+R AEQ AA   L    +
Sbjct: 183 HQQVFQIECAITGVEERFAGSGLSRRQAEQQAAGFALASLSV 224


>gi|195952887|ref|YP_002121177.1| Ribonuclease III [Hydrogenobaculum sp. Y04AAS1]
 gi|226741373|sp|B4U7T8|RNC_HYDS0 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|195932499|gb|ACG57199.1| Ribonuclease III [Hydrogenobaculum sp. Y04AAS1]
          Length = 232

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 77/222 (34%), Positives = 118/222 (53%), Gaps = 7/222 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +  LE++IGY F +++L++KA TH S S S  E+YE LEFLGD ++  +   +L   F 
Sbjct: 3   SFELLEEKIGYRFKDKNLVKKAFTHISFSKS-SENYEVLEFLGDALVNFMTVNILVEAFP 61

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           + KEGELS   + L+S E  + +A+ L+   +I +S        +   SI  DV E+  A
Sbjct: 62  NKKEGELSQLKSFLISEEFLASLAKSLNFEKYILISKGEELKGSNKNPSILCDVFEAFWA 121

Query: 125 ALYLDGGIE--VAGTFVDKYWKQRALK---SGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           A+Y+D G +  +  +  + ++K + L+   S   ++D KT LQE    K+   P Y V  
Sbjct: 122 AIYIDSGYDCKLTKSLFEHHFKSQILEMVNSNSLKQDYKTALQEITQKKWKERPIYNVIS 181

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             GP+H   FTV      L    G   SK+ AEQ AA  +L+
Sbjct: 182 VEGPEHRKTFTVECLFKDLR-TTGKGNSKKYAEQEAAKNMLQ 222


>gi|319948353|ref|ZP_08022497.1| ribonuclease III [Dietzia cinnamea P4]
 gi|319437984|gb|EFV92960.1| ribonuclease III [Dietzia cinnamea P4]
          Length = 237

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 65/205 (31%), Positives = 101/205 (49%), Gaps = 8/205 (3%)

Query: 22  LLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           L  +ALTH S ++ +      ERLEFLGD +L L+++  L+N +    EG+L+    SLV
Sbjct: 20  LATQALTHRSYAYEHGGLPHNERLEFLGDAVLELVVTEYLYNAYPDRPEGDLAKIRASLV 79

Query: 80  SAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           +    + +AREL    L   +R+             SI AD +E++  ++YL  G+E A 
Sbjct: 80  NTYVLADIARELGDGGLGRHLRLGRGEELTGGRDKHSILADTLEAVFGSVYLTHGLETAR 139

Query: 137 TFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
             ++K    R   +       D KT LQE   +       Y++T  +GPDHD  F+ VV 
Sbjct: 140 GLIEKIIGDRLTVVPHLGAALDWKTSLQEKCASLGRSKARYEITS-TGPDHDKTFSAVVF 198

Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEV 219
           +      +G   +K+ AEQ AA + 
Sbjct: 199 VGDDPLGEGTGRTKKEAEQKAAEQA 223


>gi|197119571|ref|YP_002139998.1| ribonuclease III [Geobacter bemidjiensis Bem]
 gi|197088931|gb|ACH40202.1| ribonuclease III [Geobacter bemidjiensis Bem]
          Length = 232

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 88/232 (37%), Positives = 124/232 (53%), Gaps = 8/232 (3%)

Query: 1   MSALRYSTLEK---RIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLIS 56
           MS + +  LE    R+GY F++R LL +ALTH +  +       +RLEF GD +L  L+S
Sbjct: 1   MSDMLHDPLEGIEGRLGYRFSDRGLLVEALTHRTYVNEAGGRDNQRLEFFGDAVLDFLLS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
            +L   F  ++EGEL+    +LV   +  ++A ELDL   +R+     K       S+ A
Sbjct: 61  DMLLVRFPDSREGELTRIRAALVDEASLGKIASELDLGQALRLGRGEEKGGGRQKRSLLA 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEY 175
           D  E+L+AALYLDGG++ A   V+  +            RDAKTELQE A    G  P Y
Sbjct: 121 DAFEALLAALYLDGGLDPARRVVEALFAPLLSSRDLLSGRDAKTELQETARLFKGELPRY 180

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKREG 224
           ++   +GPDHD RFTV V +      +G+  +K+ AEQ AA      LK EG
Sbjct: 181 QLKQVTGPDHDKRFTVEVYLGEELMGEGVGRTKKEAEQDAARAAFLLLKGEG 232


>gi|24379904|ref|NP_721859.1| ribonuclease III [Streptococcus mutans UA159]
 gi|81451148|sp|Q8DT66|RNC_STRMU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|24377882|gb|AAN59165.1|AE014983_6 putative ribonuclease III [Streptococcus mutans UA159]
          Length = 231

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 111/226 (49%), Gaps = 9/226 (3%)

Query: 7   STLEKRI----GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58
            TLEK++       F+++ LLE A TH+S ++ ++       ERLEFLGD +L L IS  
Sbjct: 2   KTLEKKLAEDFKIVFSDKELLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLTISHY 61

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF+ +    EG+LS   + +V  E+ +  +R      +I++     K       +I  D+
Sbjct: 62  LFDKYPQKAEGDLSKMRSMIVREESLAGFSRNCHFDRYIKLGKGEEKSGGRQRDTILGDL 121

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKV 177
            E+ + AL LD G++    F+++    +   +  +   D KT LQE       V  +Y+V
Sbjct: 122 FEAFLGALLLDAGLKAVEAFLNQVVIPKVENNNYERVTDYKTALQELLQVDGDVLIDYEV 181

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              SGP H   F V V ++    + G   SK+ AEQ AA   L++ 
Sbjct: 182 LKESGPAHAKCFEVAVSMNHEKLSSGTGKSKKLAEQEAAKNALEKL 227


>gi|25028532|ref|NP_738586.1| ribonuclease III [Corynebacterium efficiens YS-314]
 gi|23493817|dbj|BAC18786.1| putative ribonuclease III [Corynebacterium efficiens YS-314]
          Length = 255

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 113/226 (50%), Gaps = 6/226 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
            A+ ++ L +R+G    +R LL  ALTH S ++      + ERLEFLGD +LGL ++  L
Sbjct: 27  DAVNHADLLERLGVDI-DRDLLVLALTHRSFANENGMLPNNERLEFLGDAVLGLAVANRL 85

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  + S+ E ++S    S+VS    + +ARE++L  FI +             SI AD  
Sbjct: 86  YELYPSSPESDISKMRASIVSRYGLADIAREINLGEFILLGKGELLTEGRSKDSILADTT 145

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E+L+ A++   G EVA   V   +  +     +    +D KT LQE    +     EY+ 
Sbjct: 146 EALLGAIFRQHGYEVARDVVLTLFHHKINHASAKGIHQDWKTTLQEELAQRKKPMVEYQT 205

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           T   GPDHD  FT VV +  +   +G   +K+ AEQ AA +   + 
Sbjct: 206 TSV-GPDHDLLFTAVVYLGDVEMGRGEGPNKKLAEQEAARQAFLKL 250


>gi|56964064|ref|YP_175795.1| ribonuclease III [Bacillus clausii KSM-K16]
 gi|81365967|sp|Q5WFM6|RNC_BACSK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|56910307|dbj|BAD64834.1| ribonuclease III [Bacillus clausii KSM-K16]
          Length = 260

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 62/213 (29%), Positives = 100/213 (46%), Gaps = 5/213 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++  L  R G  F NR LL +A THSS  +  +       ERLEFLGD +L L +S  LF
Sbjct: 32  QFDDLLVRTGLTFENRKLLIQAFTHSSYVNEQRIFSSSDNERLEFLGDAVLELAVSQYLF 91

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             + +  EG+++    S+V   + ++ A EL     + +             ++ ADV E
Sbjct: 92  KTYKNMSEGDMTKLRASIVCEPSLARFAEELQFGKLVLLGKGEEVTGGRTRPALLADVFE 151

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + I ALY+D G+E    F+ ++   +  +    ++ D K++LQE+          Y +  
Sbjct: 152 AFIGALYMDQGLEPVFMFLARFMYPKIKEGAFTYKMDFKSQLQEFVQRDNRGQIRYLIVQ 211

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
             GP HD  F   V+++      G   SK+ AE
Sbjct: 212 ERGPAHDREFVSDVQLNEETIGTGTGRSKKEAE 244


>gi|310828474|ref|YP_003960831.1| ribonuclease III [Eubacterium limosum KIST612]
 gi|308740208|gb|ADO37868.1| ribonuclease III [Eubacterium limosum KIST612]
          Length = 222

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 69/218 (31%), Positives = 112/218 (51%), Gaps = 4/218 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             +E RI Y F ++ LL+ ALTHSS S     + ERLEFLGD +L L+IS  L+  ++  
Sbjct: 2   KRIEDRIAYTFKDKELLKVALTHSSHS-GTTTNNERLEFLGDAVLELIISEYLY-KYNKL 59

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+++   +++V AE+ SQ A +L+L  ++ +             S  A+  E+++ A+
Sbjct: 60  SEGKMTKIRSNIVCAESLSQAASDLNLGEYMLLGKGEIVTGGRKRKSNLANAFEAVMGAV 119

Query: 127 YLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           +LD   +     V    ++      SG   +D KTELQE          EY +    GP+
Sbjct: 120 FLDSDYDTTKKVVLGTLEKNIELALSGGLIKDYKTELQEQIQKHSDNAIEYVLEKSEGPE 179

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           H+  F + +  +G+  ++G   SK+ AEQ AA   L +
Sbjct: 180 HNKTFFIDLTFNGVVVSKGTGKSKKEAEQNAAKNYLFK 217


>gi|290580116|ref|YP_003484508.1| putative ribonuclease III [Streptococcus mutans NN2025]
 gi|254997015|dbj|BAH87616.1| putative ribonuclease III [Streptococcus mutans NN2025]
          Length = 231

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 111/226 (49%), Gaps = 9/226 (3%)

Query: 7   STLEKRI----GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58
            TLEK++       F+++ LLE A TH+S ++ ++       ERLEFLGD +L L IS  
Sbjct: 2   KTLEKKLAEDFKIVFSDKELLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLTISRY 61

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF+ +    EG+LS   + +V  E+ +  +R      +I++     K       +I  D+
Sbjct: 62  LFDKYPQKAEGDLSKMRSMIVREESLAGFSRNCHFDRYIKLGKGEEKSGGRQRDTILGDL 121

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKV 177
            E+ + AL LD G++    F+++    +   +  +   D KT LQE       V  +Y+V
Sbjct: 122 FEAFLGALLLDAGLKAVEAFLNQVVIPKVENNNYERVTDYKTALQELLQVDGDVLIDYEV 181

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              SGP H   F V V ++    + G   SK+ AEQ AA   L++ 
Sbjct: 182 LKESGPAHAKCFEVAVSMNHEKLSSGTGKSKKLAEQEAAKNALEKL 227


>gi|229174515|ref|ZP_04302047.1| Ribonuclease 3 [Bacillus cereus MM3]
 gi|228609075|gb|EEK66365.1| Ribonuclease 3 [Bacillus cereus MM3]
          Length = 245

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 5/209 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +   ++ IG  F++  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 19  FKVFQEEIGITFSDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A EL   S + +             ++ ADV E+
Sbjct: 79  KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            I ALYLD G+E    F+ +    +  +       D K++LQE          EY++   
Sbjct: 139 FIGALYLDQGLETVWGFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQE 198

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            GP H+  F   V ++ +A   G   SK+
Sbjct: 199 KGPAHNREFVSRVTLNNVALGLGSGKSKK 227


>gi|126739723|ref|ZP_01755415.1| ribonuclease III [Roseobacter sp. SK209-2-6]
 gi|126719369|gb|EBA16079.1| ribonuclease III [Roseobacter sp. SK209-2-6]
          Length = 228

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 81/202 (40%), Positives = 116/202 (57%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             E+RIGY F    LL +ALTH S+S   ++  +RLEFLGDR+LGL+++T +      A 
Sbjct: 9   AFEERIGYRFKRVDLLVRALTHPSVSSPNRKDNQRLEFLGDRVLGLVMATAMLESDKEAS 68

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG+L+ RFN+LV  ETC+ VARE+DL + +++             ++  D +E++IAA+Y
Sbjct: 69  EGQLAPRFNALVRKETCADVAREIDLGAVLKLGRSEMMSGGRRKLALLGDGMEAVIAAVY 128

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
            D G EVA   + + W QR  +  +  RD KT LQE+  A+    P Y    R GPDH+P
Sbjct: 129 KDAGFEVAQDMILRLWGQRIFQVEEDARDPKTALQEYVQARRQPPPAYVQVSRQGPDHEP 188

Query: 188 RFTVVVEISGLAPAQGMDCSKR 209
            FT+ V +      Q    SKR
Sbjct: 189 IFTIAVRLQDGTEEQASAGSKR 210


>gi|126728500|ref|ZP_01744316.1| Ribonuclease III [Sagittula stellata E-37]
 gi|126711465|gb|EBA10515.1| Ribonuclease III [Sagittula stellata E-37]
          Length = 225

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 75/206 (36%), Positives = 120/206 (58%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           +     LE ++G+ F +++LL +A+TH+S+S   +E  +RLEFLGDR+LGL+++  L  H
Sbjct: 4   SAEIKALEDKLGHTFRDKALLRRAVTHASMSGPGREDNQRLEFLGDRVLGLVMAEALLAH 63

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
             +A EG L+ RFN+LV  ETC++VAR + +   +++    +        ++  D +E++
Sbjct: 64  DRNASEGLLAPRFNALVRKETCAEVARTIGVGDALKLGRSEQMSGGRRKQALLGDAMEAV 123

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           IAA+YLDGG +VA   + + W        +  +DAKT LQEWA  +    P Y    RSG
Sbjct: 124 IAAVYLDGGFDVAQDMILRLWAPLIASVEEDAKDAKTTLQEWAQGRGMTPPSYTEVERSG 183

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSK 208
           PDH P FT+   ++    A+    +K
Sbjct: 184 PDHAPVFTIEARLATGETARATAGNK 209


>gi|317491018|ref|ZP_07949454.1| ribonuclease III [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920565|gb|EFV41888.1| ribonuclease III [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 226

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 74/213 (34%), Positives = 113/213 (53%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L+K++GY F  + LL +ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVTNRLQKKLGYTFQQQELLLQALTHRSASSKH---NERLEFLGDSILSFVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGIFLDSDIQTIERLILDWYRSRLDEISPGDKQKDPKTRLQEFLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SGL  P  G+  S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLSEPVIGVGSSRRK 210


>gi|256832889|ref|YP_003161616.1| ribonuclease III [Jonesia denitrificans DSM 20603]
 gi|256686420|gb|ACV09313.1| ribonuclease III [Jonesia denitrificans DSM 20603]
          Length = 241

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 73/214 (34%), Positives = 103/214 (48%), Gaps = 6/214 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
           S L  ++G    +  LL  ALTH S +H      + ERLEFLGD +LGL+ +  LF    
Sbjct: 13  SELLSKLGIHL-DPELLVLALTHRSFAHEAGGIPTNERLEFLGDAVLGLVSAEALFRGHP 71

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+L+    + VS    +Q AR L+L S+I +     +   +   SI +D VE++I 
Sbjct: 72  DRPEGDLARMRAATVSQRPLAQAARTLNLGSYILLGKGESRTGGADKDSILSDTVEAIIG 131

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+Y+  G+E A  FV +   +   ++       D KT +QE         P Y  T + G
Sbjct: 132 AVYVTHGLETAREFVHRLLGETMREAATMGAGLDWKTAIQELCAQLGYPQPTYDFTSQ-G 190

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           PDH   FT  V I       G   SK+ AEQ AA
Sbjct: 191 PDHARVFTSTVVIEDRRYGSGEGTSKKLAEQQAA 224


>gi|148259270|ref|YP_001233397.1| ribonuclease III [Acidiphilium cryptum JF-5]
 gi|146400951|gb|ABQ29478.1| RNAse III [Acidiphilium cryptum JF-5]
          Length = 221

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 84/216 (38%), Positives = 124/216 (57%), Gaps = 3/216 (1%)

Query: 10  EKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           E  +G+ FA   LL +ALTH S        S ERLEF+GDR+LGLLI+  L   F   +E
Sbjct: 6   EALLGHRFARPDLLAQALTHRSAVGQGGLGSNERLEFIGDRVLGLLIAEWLIERFPHERE 65

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G L  R   LVS ++ +++A    +A  + VS    +       ++ AD +E+LI ALYL
Sbjct: 66  GGLGPRLAHLVSRQSLAEIAEHGGIAGLLSVSPGESRRGVRNRATVLADALEALIGALYL 125

Query: 129 DGGIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           DGG+E A  F+ + +  R   +     +D KT LQE+A A+  V P Y++  R+GP H P
Sbjct: 126 DGGLEPARLFIRRIFAPRIDGQPSAPPKDPKTALQEYALARGPVLPAYELVERTGPSHAP 185

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           RF + V ++G   A+G+  +KR AEQ AA ++L++ 
Sbjct: 186 RFRIRVTVAGRT-AEGLAGTKREAEQNAARDLLEQL 220


>gi|229019045|ref|ZP_04175885.1| Ribonuclease 3 [Bacillus cereus AH1273]
 gi|228742247|gb|EEL92407.1| Ribonuclease 3 [Bacillus cereus AH1273]
          Length = 245

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 5/209 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +   ++ IG  F++  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 19  FKVFQEEIGITFSDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A EL   S + +             ++ ADV E+
Sbjct: 79  KYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            I ALYLD G+E    F+ +    +  +       D K++LQE          EY++   
Sbjct: 139 FIGALYLDQGLETVWGFLKEVVYPKINEGAFSHVMDYKSQLQELIQRDGSGNVEYQILQE 198

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            GP H+  F   V ++ +A   G   SK+
Sbjct: 199 KGPAHNREFVSRVTLNNVALGLGSGKSKK 227


>gi|238759682|ref|ZP_04620842.1| Ribonuclease 3 [Yersinia aldovae ATCC 35236]
 gi|238702110|gb|EEP94667.1| Ribonuclease 3 [Yersinia aldovae ATCC 35236]
          Length = 226

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 73/213 (34%), Positives = 110/213 (51%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F  + LL +ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFQQQELLLQALTHRSASSKH---NERLEFLGDSILSFVIANELY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I      +  ++  R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGIFLDSDIHTIERLILAWYHSRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLNEPVVGTGSSRRK 210


>gi|255325275|ref|ZP_05366381.1| ribonuclease III [Corynebacterium tuberculostearicum SK141]
 gi|255297840|gb|EET77151.1| ribonuclease III [Corynebacterium tuberculostearicum SK141]
          Length = 256

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 68/222 (30%), Positives = 109/222 (49%), Gaps = 6/222 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFN 61
           + ++ L + +G        L  ALTH S ++   +  + ERLEFLGD +LGL +++ L+ 
Sbjct: 20  VDHTPLLESLGVDLQ-PEHLRLALTHRSFANENGHLPNNERLEFLGDAVLGLSVASQLYI 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + S  E ++S    S+VS    S +ARE++L   I +    +        SI AD  E+
Sbjct: 79  TYPSRPESDISKMRASIVSRYGLSDIAREINLGPHILLGKGEQSTGGRDKDSILADTTEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179
           +  A+Y + G E A   + + + ++   +    R  D KT LQE         P Y  T 
Sbjct: 139 IFGAIYREHGFETARDVILRLFAEKIDNATVSGRHLDWKTTLQELCAELKAPMPVYSATS 198

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            +GP+HD  F  V  ++GL    G+  +K+ AEQ AA E  +
Sbjct: 199 -TGPEHDQTFNAVATVAGLTVGNGVGHNKKLAEQQAAQEACQ 239


>gi|311739750|ref|ZP_07713585.1| ribonuclease III [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311305566|gb|EFQ81634.1| ribonuclease III [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 256

 Score =  236 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 69/222 (31%), Positives = 109/222 (49%), Gaps = 6/222 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFN 61
           + +S L + +G        L  ALTH S ++   +  + ERLEFLGD +LGL +++ L+ 
Sbjct: 20  VDHSPLLESLGVDLQ-PEHLRLALTHRSFANENGHLPNNERLEFLGDAVLGLSVASQLYI 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + S  E ++S    S+VS    S +ARE++L   I +    +        SI AD  E+
Sbjct: 79  TYPSRPESDISKMRASIVSRYGLSDIAREINLGPHILLGKGEQSTGGRDKDSILADTTEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179
           +  A+Y + G E A   + + + ++   +    R  D KT LQE         P Y  T 
Sbjct: 139 IFGAIYREHGFETARDVILRLFAEKIDNATVSGRHLDWKTTLQELCAELKAPMPVYSATS 198

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            +GP+HD  F  V  ++GL    G+  +K+ AEQ AA E  +
Sbjct: 199 -TGPEHDQTFNAVATVAGLTVGNGVGHNKKLAEQQAAQEACQ 239


>gi|121605952|ref|YP_983281.1| ribonuclease III [Polaromonas naphthalenivorans CJ2]
 gi|120594921|gb|ABM38360.1| RNAse III [Polaromonas naphthalenivorans CJ2]
          Length = 233

 Score =  236 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 77/218 (35%), Positives = 110/218 (50%), Gaps = 6/218 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              L+KR+ + FA   LL +ALTH S S  +    ER+EFLGD +L L ++ LL+     
Sbjct: 11  LQALQKRLQHEFAKPKLLVQALTHRSFSSDH---NERIEFLGDSVLNLAVAGLLYEQLSE 67

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    +LV  +T  Q+A  L L   +R+     +       S+ AD +E++I A
Sbjct: 68  LPEGDLSRVRANLVKQDTLHQLAVVLGLPDLLRLGEGEARSGGKNRPSMLADALEAVIGA 127

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YLD G + A   V + +K   +        +D KTELQEW   +    P YKV    G 
Sbjct: 128 VYLDAGYDQADQLVRRLFKDVQVNPQMKAIGKDPKTELQEWLQGRKMRLPLYKVVSTMGA 187

Query: 184 DHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVL 220
            H   F V  EI+    A+ G+  S+RA EQ AA  +L
Sbjct: 188 AHQQTFEVECEIAEFGRAERGIGVSRRAGEQAAATAML 225


>gi|123441363|ref|YP_001005350.1| ribonuclease III [Yersinia enterocolitica subsp. enterocolitica
           8081]
 gi|189043376|sp|A1JKK3|RNC_YERE8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|122088324|emb|CAL11115.1| ribonuclease III [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 226

 Score =  236 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 73/213 (34%), Positives = 109/213 (51%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F  + LL +ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFQQQELLLQALTHRSASSKH---NERLEFLGDSILSFVIANELY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  RRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I      +  ++  R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGIFLDSDIHTIERLILAWYHSRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLNEPVIGTGSSRRK 210


>gi|332162691|ref|YP_004299268.1| ribonuclease III [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|33332418|gb|AAQ11416.1| ribonuclease III [Yersinia enterocolitica]
 gi|318606796|emb|CBY28294.1| ribonuclease III [Yersinia enterocolitica subsp. palearctica Y11]
 gi|325666921|gb|ADZ43565.1| ribonuclease III [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 226

 Score =  236 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 73/213 (34%), Positives = 109/213 (51%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F  + LL +ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFQQQDLLLQALTHRSASSKH---NERLEFLGDSILSFVIANELY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  RRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I      +  ++  R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGIFLDSDIHTIERLILAWYHSRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLNEPVIGTGSSRRK 210


>gi|57506125|ref|ZP_00372047.1| ribonuclease III (rnc) [Campylobacter upsaliensis RM3195]
 gi|57015609|gb|EAL52401.1| ribonuclease III (rnc) [Campylobacter upsaliensis RM3195]
          Length = 224

 Score =  236 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 122/222 (54%), Gaps = 4/222 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +   LE ++ Y F  + LL  ALTH S   +Y  + ERLEFLGD +L L++   LF+ F 
Sbjct: 3   KLELLEAKLNYKFKEQKLLIYALTHKSAKKNY--NNERLEFLGDAVLDLVVGEFLFHKFK 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EG+LS    +LV+ ++ +++A  L+L  FI +S   + +      SI +D  E+LI 
Sbjct: 61  NEAEGDLSKLRAALVNEKSFAKIATSLNLGDFIFMSIAEQNNGGKTKPSILSDTFEALIG 120

Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           AL+L+ G   A     +  ++    + +    +D KT+LQE   AK G+TPEY+     G
Sbjct: 121 ALHLEAGFIKAKEIALRLIEENFPNIDAKSLFKDYKTKLQEITQAKMGLTPEYETQRAFG 180

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           PDH   F + + + G   A+ +  SK+ A+Q+AA   L++ G
Sbjct: 181 PDHQKSFEIALNLEGKEMARAIASSKKEAQQMAAKLTLEKLG 222


>gi|326402425|ref|YP_004282506.1| ribonuclease III [Acidiphilium multivorum AIU301]
 gi|325049286|dbj|BAJ79624.1| ribonuclease III [Acidiphilium multivorum AIU301]
          Length = 221

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 85/216 (39%), Positives = 125/216 (57%), Gaps = 3/216 (1%)

Query: 10  EKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           E  +G+ FA   LL +ALTH S        S ERLEF+GDR+LGLLI+  L   F   +E
Sbjct: 6   EALLGHRFARPDLLAQALTHRSAVGQGGLGSNERLEFIGDRVLGLLIAEWLIERFPHERE 65

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G L  R   LVS ++ +++A    +A  + VS    +       ++ AD +E+LI ALYL
Sbjct: 66  GGLGPRLAHLVSRQSLAEIAEHGGIAGLLSVSPGESRRGVRNRATVLADALEALIGALYL 125

Query: 129 DGGIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           DGG+E A  F+ + +  R   +     +D KT LQE+A A+  V P Y++  R+GP H P
Sbjct: 126 DGGLEPARLFIRRIFAPRIDGQPSAPPKDPKTALQEYALARGPVLPAYELVERTGPSHAP 185

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           RF + V ++G A A+G+  +KR AEQ AA ++L++ 
Sbjct: 186 RFRIRVTVAGRA-AEGLAGTKREAEQNAARDLLEQL 220


>gi|75676109|ref|YP_318530.1| ribonuclease III [Nitrobacter winogradskyi Nb-255]
 gi|90101631|sp|Q3SRB3|RNC_NITWN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|74420979|gb|ABA05178.1| RNAse III [Nitrobacter winogradskyi Nb-255]
          Length = 266

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 88/203 (43%), Positives = 121/203 (59%), Gaps = 3/203 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           + +E+R+G+ FA+ SLL  A TH S    S    +SY+RLEFLGD +LGL++S +L+  F
Sbjct: 44  AAIEQRLGHTFADISLLTTAFTHVSALKSSRGRCDSYQRLEFLGDHVLGLVVSDMLYRAF 103

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EGELS R   LV  ETC  VA+ LDL   +++ +           S+  D+ E++I
Sbjct: 104 PKADEGELSKRLADLVRKETCIDVAKSLDLQEGVKLGAVGAGAGARLRRSVLGDICEAVI 163

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            A+YLDGG   A  FV++ W +R  K  +  RD KT LQEWA  K   TP Y+   R+GP
Sbjct: 164 GAVYLDGGYAAAAAFVERNWLERMRKPVRPLRDPKTVLQEWAQGKGLPTPVYREVERTGP 223

Query: 184 DHDPRFTVVVEISGLAPAQGMDC 206
            HDPRF V VE+ GL  ++G+  
Sbjct: 224 HHDPRFRVAVELPGLESSEGIGG 246


>gi|121996844|ref|YP_001001631.1| ribonuclease III [Halorhodospira halophila SL1]
 gi|121588249|gb|ABM60829.1| RNAse III [Halorhodospira halophila SL1]
          Length = 234

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 69/219 (31%), Positives = 105/219 (47%), Gaps = 6/219 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               L++R+ Y F     L++A+TH S    +    ERLEFLGD +L  +++  +F+   
Sbjct: 3   DLERLQQRLDYQFLELERLQEAVTHRSAGGRH---NERLEFLGDSVLNFVVAHEVFHRRP 59

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EG LS    SLV+  + + +AR+++L   +R+     K       SI AD +E++  
Sbjct: 60  TDSEGTLSRLRASLVNRSSLAAIARDIELGDHLRLGGGELKSGGHRRDSILADALEAVFG 119

Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YLD G E A   +   ++ R   L      +D KT LQE   +     P Y+V    G
Sbjct: 120 AVYLDAGFETAARVITGLYRSRLESLPDKAVLKDPKTRLQEVLQSTRRPLPGYQVLDVRG 179

Query: 183 PDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVL 220
             H  RF V   +S       G   S+R AEQ AA  +L
Sbjct: 180 RAHHQRFQVECRLSDSEQTTLGEAGSRRQAEQRAAEAML 218


>gi|91205996|ref|YP_538351.1| ribonuclease III [Rickettsia bellii RML369-C]
 gi|157826640|ref|YP_001495704.1| ribonuclease III [Rickettsia bellii OSU 85-389]
 gi|122425284|sp|Q1RHA2|RNC_RICBR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043340|sp|A8GYE2|RNC_RICB8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|91069540|gb|ABE05262.1| Ribonuclease III [Rickettsia bellii RML369-C]
 gi|157801944|gb|ABV78667.1| ribonuclease III [Rickettsia bellii OSU 85-389]
          Length = 227

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 79/224 (35%), Positives = 117/224 (52%), Gaps = 5/224 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59
             +  LEK + Y+F N++LL +AL+H S+   ++    + YERLEFLGD +L L+I+ +L
Sbjct: 2   ESFEELEKLLDYSFKNKALLTEALSHPSLRQHHEYKANKDYERLEFLGDAVLNLIITEIL 61

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           FN+F    EG L+   + LV  ET   V  +L L ++I ++            +   +V 
Sbjct: 62  FNNFKEYNEGNLAKIRSYLVCKETICVVGAKLGLKNYIIMTHGEEIAGGRDNPNNIENVT 121

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E+LIAA+YLD  I      + K W +          D KT LQEWA +K    P Y++  
Sbjct: 122 EALIAAIYLDSDITTIHNIIGKLWAEFIKVKDLTDYDPKTALQEWAQSKDHHIPIYRLIK 181

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           R G  H   FTV V+I+G     G   S + AE+ AA E+L + 
Sbjct: 182 REGVAHLSTFTVSVKINGYEQ-TGKGHSIKEAEKNAARELLHKL 224


>gi|239636288|ref|ZP_04677290.1| ribonuclease III [Staphylococcus warneri L37603]
 gi|239597643|gb|EEQ80138.1| ribonuclease III [Staphylococcus warneri L37603]
          Length = 243

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 62/216 (28%), Positives = 98/216 (45%), Gaps = 5/216 (2%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +G+ + N  L ++A +HSS  + +     +  ERLEFLGD +L L +S  LF+      E
Sbjct: 24  LGFEYNNIELYQQAFSHSSFINDFNMDRLDHNERLEFLGDAVLELTVSRYLFDKHPDLPE 83

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G L+    ++V   +    A ++ L   I +     K       S+ +D  E+ + ALYL
Sbjct: 84  GNLTKMRATIVCEPSLVIFANKIKLNELILLGKGEEKTGGRTRPSLISDAFEAFVGALYL 143

Query: 129 DGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           D G++    F DK               D KT+ QE+ H +      Y++    GP H  
Sbjct: 144 DQGLDTVWDFADKIIFPYVEDDELDGVVDFKTQFQEFVHRQNKGDVTYRLIKEEGPAHHR 203

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            FT  V +   A A+G   +K+ +EQ AA    K+ 
Sbjct: 204 LFTSEVILEKQAIAEGQGKTKKESEQKAAERAYKQM 239


>gi|293376124|ref|ZP_06622372.1| ribonuclease III [Turicibacter sanguinis PC909]
 gi|325841637|ref|ZP_08167414.1| ribonuclease III [Turicibacter sp. HGF1]
 gi|292645251|gb|EFF63313.1| ribonuclease III [Turicibacter sanguinis PC909]
 gi|325489915|gb|EGC92263.1| ribonuclease III [Turicibacter sp. HGF1]
          Length = 236

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 63/222 (28%), Positives = 104/222 (46%), Gaps = 5/222 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           + +   K    AF       +A THSS  + ++    E  ERLE+LGD +L L +S  LF
Sbjct: 6   QLAEFLKENKIAFRQLDRYCQAFTHSSYVNEHRHLKIEDNERLEYLGDAVLELTVSNYLF 65

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N   S  EGE++     LV   +    AR L+L   + +             ++ AD  E
Sbjct: 66  NLKPSLSEGEMTKIRAQLVCEPSLESYARNLNLGKLMLLGRGEENSGGRERPTVLADAFE 125

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTF 179
           + + A+YLD G++   +FV +   +   +    +  D K+ LQE   A      EY++  
Sbjct: 126 AFVGAMYLDLGMDTVYSFVHEIIHKAYQQGEVTQVFDYKSTLQELVQADSKKAIEYRIIS 185

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            +GP H+  F  +V + G+   +G+  +K+ AEQ AA   ++
Sbjct: 186 ETGPAHNRSFEAIVLLDGITLGRGIGKTKKEAEQQAAKGAIE 227


>gi|22125197|ref|NP_668620.1| ribonuclease III [Yersinia pestis KIM 10]
 gi|45442304|ref|NP_993843.1| ribonuclease III [Yersinia pestis biovar Microtus str. 91001]
 gi|51597206|ref|YP_071397.1| ribonuclease III [Yersinia pseudotuberculosis IP 32953]
 gi|108808446|ref|YP_652362.1| ribonuclease III [Yersinia pestis Antiqua]
 gi|108811369|ref|YP_647136.1| ribonuclease III [Yersinia pestis Nepal516]
 gi|145598837|ref|YP_001162913.1| ribonuclease III [Yersinia pestis Pestoides F]
 gi|149365390|ref|ZP_01887425.1| ribonuclease III [Yersinia pestis CA88-4125]
 gi|153949383|ref|YP_001400117.1| ribonuclease III [Yersinia pseudotuberculosis IP 31758]
 gi|162419239|ref|YP_001607935.1| ribonuclease III [Yersinia pestis Angola]
 gi|165925157|ref|ZP_02220989.1| ribonuclease III [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165937011|ref|ZP_02225576.1| ribonuclease III [Yersinia pestis biovar Orientalis str. IP275]
 gi|166008358|ref|ZP_02229256.1| ribonuclease III [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166212532|ref|ZP_02238567.1| ribonuclease III [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167399049|ref|ZP_02304573.1| ribonuclease III [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167421411|ref|ZP_02313164.1| ribonuclease III [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167423187|ref|ZP_02314940.1| ribonuclease III [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|218929790|ref|YP_002347665.1| ribonuclease III [Yersinia pestis CO92]
 gi|229838281|ref|ZP_04458440.1| RNase III [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229895523|ref|ZP_04510694.1| RNase III [Yersinia pestis Pestoides A]
 gi|229898845|ref|ZP_04513990.1| RNase III [Yersinia pestis biovar Orientalis str. India 195]
 gi|229901619|ref|ZP_04516741.1| RNase III [Yersinia pestis Nepal516]
 gi|270489808|ref|ZP_06206882.1| ribonuclease III [Yersinia pestis KIM D27]
 gi|284988625|ref|YP_001719940.2| ribonuclease III [Yersinia pseudotuberculosis YPIII]
 gi|284988628|ref|YP_001873415.2| ribonuclease III [Yersinia pseudotuberculosis PB1/+]
 gi|22654064|sp|Q8ZD72|RNC_YERPE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|73917588|sp|Q667V1|RNC_YERPS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|122980240|sp|Q1CKE4|RNC_YERPN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|123372250|sp|Q1C555|RNC_YERPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043377|sp|A7FFT9|RNC_YERP3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043378|sp|A4TKX8|RNC_YERPP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|238687295|sp|A9R402|RNC_YERPG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|21958062|gb|AAM84871.1|AE013732_3 RNase III, ds RNA [Yersinia pestis KIM 10]
 gi|45437168|gb|AAS62720.1| ribonuclease III [Yersinia pestis biovar Microtus str. 91001]
 gi|51590488|emb|CAH22128.1| ribonuclease III [Yersinia pseudotuberculosis IP 32953]
 gi|108775017|gb|ABG17536.1| RNAse III [Yersinia pestis Nepal516]
 gi|108780359|gb|ABG14417.1| RNAse III [Yersinia pestis Antiqua]
 gi|115348401|emb|CAL21337.1| ribonuclease III [Yersinia pestis CO92]
 gi|145210533|gb|ABP39940.1| RNAse III [Yersinia pestis Pestoides F]
 gi|149291803|gb|EDM41877.1| ribonuclease III [Yersinia pestis CA88-4125]
 gi|152960878|gb|ABS48339.1| ribonuclease III [Yersinia pseudotuberculosis IP 31758]
 gi|162352054|gb|ABX86002.1| ribonuclease III [Yersinia pestis Angola]
 gi|165914874|gb|EDR33486.1| ribonuclease III [Yersinia pestis biovar Orientalis str. IP275]
 gi|165922764|gb|EDR39915.1| ribonuclease III [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165992740|gb|EDR45041.1| ribonuclease III [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166206463|gb|EDR50943.1| ribonuclease III [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166960900|gb|EDR56921.1| ribonuclease III [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167051553|gb|EDR62961.1| ribonuclease III [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167057357|gb|EDR67103.1| ribonuclease III [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|229681548|gb|EEO77642.1| RNase III [Yersinia pestis Nepal516]
 gi|229688393|gb|EEO80464.1| RNase III [Yersinia pestis biovar Orientalis str. India 195]
 gi|229694647|gb|EEO84694.1| RNase III [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229701329|gb|EEO89357.1| RNase III [Yersinia pestis Pestoides A]
 gi|270338312|gb|EFA49089.1| ribonuclease III [Yersinia pestis KIM D27]
 gi|320016075|gb|ADV99646.1| RNase III [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 226

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 73/213 (34%), Positives = 110/213 (51%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F  + LL +ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFQQQELLLQALTHRSASSKH---NERLEFLGDSILSFVIANELY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  RRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I      + +++  R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSDIHTIERLILEWYHSRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 178 QVRGEAHDQEFTIHCQVSGLNEPVIGTGSSRRK 210


>gi|285019301|ref|YP_003377012.1| ribonuclease III protein [Xanthomonas albilineans GPE PC73]
 gi|283474519|emb|CBA17020.1| probable ribonuclease III protein [Xanthomonas albilineans]
          Length = 227

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 78/216 (36%), Positives = 115/216 (53%), Gaps = 6/216 (2%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
            RIG+ F    LL +ALTH S    +    ERLEFLGD I+ LLI+  L+  +  A EG 
Sbjct: 11  DRIGHRFTEPQLLAQALTHRSAGAPH---NERLEFLGDSIVNLLIAEALYQRWPKADEGA 67

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           L+     LV   + + + R+L+L   + +     K       SI AD VE+++AA+YLD 
Sbjct: 68  LTRARAELVREASLAAIGRQLELGDRLTLGPGEMKSGGHRRDSILADAVEAVVAAIYLDA 127

Query: 131 GIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           G E     +  +++    AL  GK  +DAKT LQEW  A+    P Y++   +G +H  R
Sbjct: 128 GFETCRATILPWFESGLAALPVGKPEKDAKTRLQEWLQARQRALPAYELISETGDEHAKR 187

Query: 189 FTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F V   ++  +  A+G   S+R AEQ AAA V+++ 
Sbjct: 188 FRVRCALTEPVLVAEGEGTSRRLAEQQAAAAVIEQL 223


>gi|189425004|ref|YP_001952181.1| ribonuclease III [Geobacter lovleyi SZ]
 gi|189421263|gb|ACD95661.1| Ribonuclease III [Geobacter lovleyi SZ]
          Length = 228

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 69/205 (33%), Positives = 108/205 (52%), Gaps = 7/205 (3%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAK 67
            +G++F N+ LL++ALTH S  +  ++     Y+RLEFLGD +LG L++ LL  HF +  
Sbjct: 8   ILGHSFINQRLLQQALTHPSYLNEARQEGAADYQRLEFLGDAVLGFLLADLLCQHFPALP 67

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG+LS   +SLV     +++A +  +   I +     ++      SI ADV E+L+ A++
Sbjct: 68  EGDLSRLRSSLVDQPRLARLAVDAGIPPLILMGKGAEREGGRTNPSILADVFEALLGAIH 127

Query: 128 LDGGIEVAGTFVDKYWKQ--RALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
            D G       V   +     A+ +G     DAK+ELQE   A+    P Y +  + GPD
Sbjct: 128 CDAGFAAVQQVVKHIYAPLVNAIAAGTPAHHDAKSELQELLAARKQAAPVYNLVDQQGPD 187

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKR 209
           HD  F + V + G+   QG   SK+
Sbjct: 188 HDRLFCIEVSVDGMPLGQGQGRSKK 212


>gi|313897603|ref|ZP_07831145.1| ribonuclease III [Clostridium sp. HGF2]
 gi|312957555|gb|EFR39181.1| ribonuclease III [Clostridium sp. HGF2]
          Length = 227

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 63/215 (29%), Positives = 108/215 (50%), Gaps = 6/215 (2%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
             A++++ L+ +AL HSS  + ++      ERLEF+GD +L L  +  LF       EG+
Sbjct: 12  NIAYSDKKLITQALVHSSYVNEHKSYAHDNERLEFMGDAVLQLWTTKKLFLLEPELSEGQ 71

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           ++     LV  E  ++  R+L L  ++ +     K       SI AD+ E+L+ A++LD 
Sbjct: 72  MTTLRAQLVCEEALAEYNRQLGLGKYLMLGVGEEKTGGRQRDSILADMFEALLGAVFLDQ 131

Query: 131 GIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           G+E   + +       A+   K  +  D KT+LQE+  +    T  Y+    SGP + P 
Sbjct: 132 GMEAIDSILSAVVTP-AISRPKSEKVIDYKTKLQEYIQSDSRKTVHYETVNVSGPSNKPE 190

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F V+V +  +   +G   SK+ AEQ+AA +  ++ 
Sbjct: 191 FEVIVMLDDINLGRGKGFSKKRAEQMAAKDAFEKM 225


>gi|268680594|ref|YP_003305025.1| ribonuclease III [Sulfurospirillum deleyianum DSM 6946]
 gi|268618625|gb|ACZ12990.1| ribonuclease III [Sulfurospirillum deleyianum DSM 6946]
          Length = 227

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 80/219 (36%), Positives = 117/219 (53%), Gaps = 4/219 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +   L+KR+GY F N++L+ +ALTH S    Y  + ERLEFLGD +L L++   L+  F 
Sbjct: 4   KLEALQKRLGYQFKNQNLIIEALTHKSSKQPY--NNERLEFLGDAVLDLIVGEYLYKEFL 61

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGELS    SLV+ ++  ++AR L L   I +S     +      S+ ++  E++I 
Sbjct: 62  GVAEGELSKLRASLVNEKSFEKLARLLHLGESIYISLAEENNNGREKPSLLSNAFEAIIG 121

Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           ALYL+ G+E A T      ++    +      RD KT LQE   A FGVTPEY++    G
Sbjct: 122 ALYLEAGLEKARTLAISLLEEAYPKIDMDAIFRDHKTTLQELTQAHFGVTPEYRLVRSFG 181

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           PDH   F + V + G   +     SK+ A+Q AA   L+
Sbjct: 182 PDHQKEFEIAVSVRGSDLSLASGKSKKEAQQKAALLALE 220


>gi|154148336|ref|YP_001407136.1| ribonuclease III [Campylobacter hominis ATCC BAA-381]
 gi|153804345|gb|ABS51352.1| ribonuclease III [Campylobacter hominis ATCC BAA-381]
          Length = 223

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 70/208 (33%), Positives = 111/208 (53%), Gaps = 3/208 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             +EK +GY F N + L+ ALTH S      ++ ERLEFLGD ++ L+++  L+  F   
Sbjct: 2   HEIEKILGYKFKNENHLKLALTHKSF--KGAQNNERLEFLGDAVMDLIVAEYLYEKFRHT 59

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +EG+LS    +LV+ ++ ++ AR+L +   + +S     +      SI +D  E++  A+
Sbjct: 60  QEGDLSKLRAALVNEKSFAKFARKLKIGENLFLSLGEEHNGGRKKDSILSDAFEAIFGAI 119

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           YL+ G+EV  +   K  ++   +  K   +D KTELQE   A F +TP YK+   +GPDH
Sbjct: 120 YLESGLEVCKSLSIKILEEIFPQIDKSLYKDFKTELQEITQANFALTPTYKLLSATGPDH 179

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
              F + V       A     SK+ AEQ
Sbjct: 180 KKEFEMAVFFDDKKIAAAKGKSKKEAEQ 207


>gi|146296620|ref|YP_001180391.1| ribonuclease III [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410196|gb|ABP67200.1| RNAse III [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 224

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 125/221 (56%), Gaps = 3/221 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + +EK++GY F N +LL+ ALTH S +H  +  YERLEFLGD +L L++S  LF HF   
Sbjct: 2   TDIEKKLGYRFKNPNLLKLALTHKSATHDDKSCYERLEFLGDAVLELVVSKYLFEHFPQL 61

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGEL+    ++V +ET S+VA  L+L  +I    + +K+      SI +DV+E++   +
Sbjct: 62  SEGELTNLRATIVCSETLSKVAETLNLKRYIVFGKNEKKEGFEGNKSIWSDVLEAIFGGI 121

Query: 127 YLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           +L+ G ++A   V    +    K+  GK   D KT+LQE+   +  V  +Y + + +  D
Sbjct: 122 FLESGFDMAEKIVINLLEPFIKKAAEGKLFYDYKTKLQEFIQREKNVKIKY-IDYENFED 180

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           +  RF   + I     ++G   SK+ A+Q AA   LK+ G+
Sbjct: 181 NLSRFKSELYIGKNKISEGYGNSKKEAQQEAALNALKKLGV 221


>gi|110678686|ref|YP_681693.1| ribonuclease III [Roseobacter denitrificans OCh 114]
 gi|123362135|sp|Q16AI6|RNC_ROSDO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|109454802|gb|ABG31007.1| ribonuclease III [Roseobacter denitrificans OCh 114]
          Length = 228

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 79/207 (38%), Positives = 121/207 (58%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           +    + +KR+G+ F   +LL +A+TH+S+S + +   +R+EFLGDR+LGL+++  L   
Sbjct: 4   SAELKSFQKRLGHQFNQPALLAQAVTHASMSTANRGDNQRMEFLGDRVLGLVMAEALLRL 63

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            ++A EG+L+ RFN+LV  ETC+ VARE+DL + +R+             ++  D +E++
Sbjct: 64  DNNATEGQLAPRFNALVRKETCADVAREIDLGAVLRLGRSEMLSGGRRKQALLGDAIEAV 123

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           IAA+Y D G + A   + + W  R  +  +  RD KT LQEWA A+    P Y+   R G
Sbjct: 124 IAAVYQDAGFDAARALILRLWGDRVHEVEEDARDPKTALQEWAQARGLQPPRYEEVSRKG 183

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209
           PDH P FT+ V IS     Q    SKR
Sbjct: 184 PDHAPIFTISVRISTGETDQATAGSKR 210


>gi|317154737|ref|YP_004122785.1| ribonuclease III [Desulfovibrio aespoeensis Aspo-2]
 gi|316944988|gb|ADU64039.1| ribonuclease III [Desulfovibrio aespoeensis Aspo-2]
          Length = 230

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 112/226 (49%), Gaps = 4/226 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLFN 61
           +    L++RI + F    L+E ALTHSS ++  +     ERLEFLGD +L L IS   + 
Sbjct: 1   MDTGDLQQRIHHRFGQVKLMEAALTHSSHANEQEGDGDNERLEFLGDAVLELCISEEGYR 60

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F  A EG+L+   + LV  ++ + +AR LDL   I +             ++ AD  E+
Sbjct: 61  RFPHAPEGQLTRIRSQLVKEKSLAAIARSLDLHRHILLGKGEELQGGRDRDALLADAFEA 120

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTF 179
           L+ A++LDGG   A   +   +  +  ++      +D K+ LQE A  +F   P Y +  
Sbjct: 121 LMGAVFLDGGFAAARKSILHIFGDKWPEAEMLPETKDYKSRLQEVAQERFRDRPVYVLAG 180

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            SGP+H+  F V   +   A  +G+  S + AEQ AA   L+   +
Sbjct: 181 TSGPEHEKVFMVDATLPTGACFRGVSSSVKRAEQEAARLGLRALNV 226


>gi|114797101|ref|YP_759604.1| ribonuclease III [Hyphomonas neptunium ATCC 15444]
 gi|114737275|gb|ABI75400.1| ribonuclease III [Hyphomonas neptunium ATCC 15444]
          Length = 234

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 81/225 (36%), Positives = 120/225 (53%), Gaps = 5/225 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLIS 56
           +        ++ IG+ F + ++LE+ALTH S       + + S +RLEFLGDR+L L+I+
Sbjct: 5   LPPEALKEAQEIIGFKFKDAAILERALTHPSAIPPSGDTVKLSNQRLEFLGDRVLNLIIA 64

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L     S  EG+L+ R N LV    C++  R L L  FI +S            S   
Sbjct: 65  ERLIERRQSDSEGDLAPRLNRLVKKGACAEAMRFLGLQRFILLSESEVAAGGHDRESTLG 124

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           D  E++IAA+Y +GG+  A  F+++ W  +        +D KT LQEWA  +    P+Y 
Sbjct: 125 DACEAVIAAIYQEGGLAAARKFIERAWAPQFENVPAETKDPKTLLQEWAQGQGHPLPDYV 184

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           VT RSGPDH P++ V V ++ +  A     SKR AE+ AAA +L+
Sbjct: 185 VTGRSGPDHAPQYEVEVRLA-VGKATATGPSKREAERHAAALMLR 228


>gi|206901475|ref|YP_002250663.1| ribonuclease III [Dictyoglomus thermophilum H-6-12]
 gi|206740578|gb|ACI19636.1| ribonuclease III [Dictyoglomus thermophilum H-6-12]
          Length = 237

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 72/221 (32%), Positives = 114/221 (51%), Gaps = 5/221 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNH 62
            S ++++ G +F N++L+ +ALTH S  H         +RLEFLGD +L ++I+ +LF  
Sbjct: 17  LSKVKEKTGISFDNKNLIIEALTHPSFKHENPHFEYDNQRLEFLGDAVLNMIITEILFQR 76

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +  A EG L+ +   +V  ET  + A+ L+L   I +     K       SI +D+ E+ 
Sbjct: 77  YKEASEGILTQKRIYMVKEETLYKKAKSLNLGDLILLGKGEEKQGGREKISILSDLFEAF 136

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           I ALYLD G E    FV++ +++  ++S +   D K  LQ     +    P Y VT   G
Sbjct: 137 IGALYLDKGYEFTKNFVERIFREE-IESVEMEIDWKNLLQSQLMKEGKK-PSYIVTREEG 194

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           P+H+  F V + I     A+G   +KR AE  AA   L++ 
Sbjct: 195 PEHNKIFYVELWIDNNKIAEGEGKTKREAEIKAAKIALEKM 235


>gi|171909524|ref|ZP_02924994.1| putative Ribonuclease III [Verrucomicrobium spinosum DSM 4136]
          Length = 238

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 72/208 (34%), Positives = 105/208 (50%), Gaps = 5/208 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFD 64
           +LE RI Y F    LL++ALTH S+ +  +      +RLE+LGD +L L++S  +++ F 
Sbjct: 3   SLESRIAYQFKQPELLQEALTHPSLPYESKNPQRHNQRLEYLGDAVLQLVLSEAIYHQFP 62

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG L+     LV   T + +AR+L L   + +      +      S  ADV+ES+I 
Sbjct: 63  LDDEGLLTKLRTRLVQTRTLAHIARQLCLGRDLLLGKGEESNGGRSRESTLADVMESIIG 122

Query: 125 ALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YLDGGIE    FV ++W     AL+      + K +LQE    + G TP Y++    G
Sbjct: 123 AVYLDGGIEAVRPFVLQHWSHDLAALQHSPVELNPKGQLQELLQGEGGNTPTYRIIAAEG 182

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRA 210
           PDH   F  VV       A G   SK+ 
Sbjct: 183 PDHQKVFQAVVVWQDRDLAAGTGRSKKE 210


>gi|307610570|emb|CBX00158.1| hypothetical protein LPW_19031 [Legionella pneumophila 130b]
          Length = 206

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 74/206 (35%), Positives = 111/206 (53%), Gaps = 6/206 (2%)

Query: 21  SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
           + L++ALTH S      ++YER EFLGD IL  +I+  LFN F    EG+LS   + LV 
Sbjct: 2   AYLKQALTHCSAG---SDNYERFEFLGDSILSFVIANELFNRFPLHSEGQLSRLRSFLVK 58

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140
            E  +++ARE+ L  ++ +     +      TSI AD +E+++AA+YLDGG+  A   + 
Sbjct: 59  GEMLAEIAREIGLGDYLFLGQGELRSGGFRRTSILADALEAILAAIYLDGGMTAAKQIIL 118

Query: 141 KYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
             +  R          +DAKT+LQE+  A     PEY +T   G +H   F V   I G+
Sbjct: 119 MLYSSRLDDPDLNHCLKDAKTQLQEFLQASKFALPEYVLTKVEGDEHAQIFHVTCTIEGV 178

Query: 199 -APAQGMDCSKRAAEQVAAAEVLKRE 223
              A G   ++R AEQ+AA  +L++ 
Sbjct: 179 SQVAYGTGPNRRKAEQLAAKAMLEQL 204


>gi|88856701|ref|ZP_01131356.1| ribonuclease III [marine actinobacterium PHSC20C1]
 gi|88813998|gb|EAR23865.1| ribonuclease III [marine actinobacterium PHSC20C1]
          Length = 233

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 75/221 (33%), Positives = 107/221 (48%), Gaps = 6/221 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLF 60
           +   + L   +G    N  +L  ALTH S ++      + ERLEFLGD ILG  ++  L+
Sbjct: 6   SSSQAELSAVLGVEI-NPDVLTLALTHRSFAYENGGIANNERLEFLGDSILGQAVTVKLY 64

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                  EG+L+ R  SLVS+   +++AR + L ++IR+     +       SI AD VE
Sbjct: 65  RDNPELDEGDLAKRRASLVSSVALAEIARLIGLGAYIRLGKGEEQTGGREKPSILADTVE 124

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A YLD G + A   V +          +F    D KT LQE A       P+Y++ 
Sbjct: 125 AIIGAAYLDLGGDAATALVLRLVAPLLADPERFGAAMDPKTSLQELAAQLGRGVPDYRIE 184

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
             SGPDH  RF   + +S    A G   SK+ AE  AA E 
Sbjct: 185 D-SGPDHSKRFHASLVLSNDVIATGTGSSKKQAEMAAALEA 224


>gi|149173983|ref|ZP_01852611.1| ribonuclease III [Planctomyces maris DSM 8797]
 gi|148846963|gb|EDL61298.1| ribonuclease III [Planctomyces maris DSM 8797]
          Length = 247

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 79/218 (36%), Positives = 118/218 (54%), Gaps = 3/218 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
               ++ +GY F +  LL+  LTH+S + +  +S ERLEFLGD ILG ++   LF+ F +
Sbjct: 14  LEECQQNLGYRFVDCELLKSCLTHTSAAKTRMDSNERLEFLGDAILGSIVCEKLFDQFPN 73

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A EGEL+   +++VS  TC+++ARE  L  FI V   L     +   S+ A + E+LIA 
Sbjct: 74  APEGELTRIKSAVVSRNTCTRLAREKGLDRFIFVGKGLAMTE-NLPESLLAGMFEALIAG 132

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YLDGGI     F+D   ++   K+ +     + K+ LQ+++  KF  TP Y+V    GP
Sbjct: 133 IYLDGGIAPVHQFLDPLIERENSKASRSVHGYNYKSLLQQYSQKKFSQTPIYEVLDEKGP 192

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           DH   F V   I           +K+ AEQ AA   L+
Sbjct: 193 DHSKFFKVTAIIGEHKYEPAWGSTKKEAEQRAAYNALR 230


>gi|259507587|ref|ZP_05750487.1| ribonuclease III [Corynebacterium efficiens YS-314]
 gi|90101620|sp|Q8FP16|RNC_COREF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|259164766|gb|EEW49320.1| ribonuclease III [Corynebacterium efficiens YS-314]
          Length = 247

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 113/226 (50%), Gaps = 6/226 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
            A+ ++ L +R+G    +R LL  ALTH S ++      + ERLEFLGD +LGL ++  L
Sbjct: 19  DAVNHADLLERLGVDI-DRDLLVLALTHRSFANENGMLPNNERLEFLGDAVLGLAVANRL 77

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  + S+ E ++S    S+VS    + +ARE++L  FI +             SI AD  
Sbjct: 78  YELYPSSPESDISKMRASIVSRYGLADIAREINLGEFILLGKGELLTEGRSKDSILADTT 137

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E+L+ A++   G EVA   V   +  +     +    +D KT LQE    +     EY+ 
Sbjct: 138 EALLGAIFRQHGYEVARDVVLTLFHHKINHASAKGIHQDWKTTLQEELAQRKKPMVEYQT 197

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           T   GPDHD  FT VV +  +   +G   +K+ AEQ AA +   + 
Sbjct: 198 TSV-GPDHDLLFTAVVYLGDVEMGRGEGPNKKLAEQEAARQAFLKL 242


>gi|118580198|ref|YP_901448.1| ribonuclease III [Pelobacter propionicus DSM 2379]
 gi|118502908|gb|ABK99390.1| RNAse III [Pelobacter propionicus DSM 2379]
          Length = 234

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 74/212 (34%), Positives = 114/212 (53%), Gaps = 4/212 (1%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLF 60
           A   + LE+ I Y F +++ L +ALTH S  H      +Y+RLEFLGD +LG++++ +LF
Sbjct: 2   ASDLAELEREIAYRFIDQAPLLQALTHPSFEHEQAGGGNYQRLEFLGDAVLGMVLAEMLF 61

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  + EG LS   + +   +T + +AR   L  F+R+     +       SI ADV+E
Sbjct: 62  RRFPDSNEGVLSRLRSQIADQDTLAGIARSFGLGRFVRLGRGEEQGAGRNKDSILADVLE 121

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178
           +LIAA+YLDGG++ +   + + +       G   R  DAK+ELQE   A+   +P Y++T
Sbjct: 122 ALIAAVYLDGGLKESRRLIQRLFVAILESRGARLRFNDAKSELQELLSARRLPSPVYRLT 181

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
             SGP HD  F   V +      +G   SK+ 
Sbjct: 182 GESGPPHDRLFIFQVLVDDAVVGEGEGRSKKI 213


>gi|148270763|ref|YP_001245223.1| ribonuclease III [Thermotoga petrophila RKU-1]
 gi|189043372|sp|A5IN74|RNC_THEP1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|147736307|gb|ABQ47647.1| RNAse III [Thermotoga petrophila RKU-1]
          Length = 240

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 111/227 (48%), Gaps = 9/227 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-------ESYERLEFLGDRILGLLISTL 58
               +K+ G  F N  LL +AL HSS ++          ES E+LEFLGD +L L +  +
Sbjct: 9   VEEFQKKTGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEI 68

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L+  +  A+ G+L+   ++  S E  + V+REL+L  F+ +     K       SI AD 
Sbjct: 69  LYKKYPEAEVGDLARAKSAAASEEVLAMVSRELNLGKFLFLGKGEEKTGGRDRDSILADA 128

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
            E+L+AA+YLD G        ++ ++     +  G+   D KT LQE   ++  V PEY 
Sbjct: 129 FEALLAAIYLDQGYHKIKELFEEEFELYIEKIMRGEMLFDYKTALQEIVQSEHKVPPEYV 188

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +      D D  F V V + G + A G   +K+ AE+ AA    ++ 
Sbjct: 189 LVRTEKNDGDRIFVVEVRVDGKSIAMGRGRTKKEAEKEAARIAYEKL 235


>gi|222100439|ref|YP_002535007.1| Ribonuclease 3 [Thermotoga neapolitana DSM 4359]
 gi|254807907|sp|B9K9K8|RNC_THENN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|221572829|gb|ACM23641.1| Ribonuclease 3 [Thermotoga neapolitana DSM 4359]
          Length = 240

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 67/227 (29%), Positives = 112/227 (49%), Gaps = 9/227 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-------ESYERLEFLGDRILGLLISTL 58
              L+KR+G  F +  LL +AL HSS ++  +       ES E+LEFLGD +L L +  +
Sbjct: 9   VEELQKRLGVLFNDEELLFRALCHSSYANEQKQAGREDVESNEKLEFLGDAVLELFVCEI 68

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L+  +  A+ G+L+   +++ S E  ++V+R L+L  ++ +     K       SI AD 
Sbjct: 69  LYRKYPEAEVGDLARVKSAVASEEVLARVSRRLELGKYLFLGKGEEKTGGRERDSILADA 128

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
            E+L+AALYLD G +      +  ++     +  G+   D KT LQE    +    PEY 
Sbjct: 129 FEALLAALYLDQGYQKIKDLFEDEFESYIEKIMKGEILFDYKTALQEIVQREHKTPPEYV 188

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +        +  F V V ++    A G   +K+ AE+ AA +  ++ 
Sbjct: 189 LVRTEKNGSEKLFVVEVRVNDETLAVGRGRTKKEAEKDAARKAYEKL 235


>gi|187477630|ref|YP_785654.1| ribonuclease III [Bordetella avium 197N]
 gi|123514189|sp|Q2KWY0|RNC_BORA1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|115422216|emb|CAJ48740.1| ribonuclease III [Bordetella avium 197N]
          Length = 251

 Score =  234 bits (599), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 70/213 (32%), Positives = 109/213 (51%), Gaps = 6/213 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  +TLE R+G+ F +++LLE+ALTH S         ERLEFLGD +L  +++ +LF  +
Sbjct: 1   MSLATLETRLGHHFGDQALLEQALTHRS---HGARHNERLEFLGDSVLNFVVAAMLFERY 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV   + + +A+ L+L+ ++R+     K       SI AD VE+L 
Sbjct: 58  AKLDEGDLSRVRANLVKQASLADIAQRLELSPYLRLGEGEMKSGGFRRPSILADAVEALF 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LD G + A   +++ +      +      +DAKT LQE+   +    P Y V    
Sbjct: 118 GAVFLDAGFDAARKVIEQQYVPVLANVDPETLGKDAKTLLQEFLQGRKLALPLYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQ 213
           G  H  +F V   I  L         S+RAAEQ
Sbjct: 178 GAAHSQQFEVECAIPALEIKVTAAGASRRAAEQ 210


>gi|120609884|ref|YP_969562.1| ribonuclease III [Acidovorax citrulli AAC00-1]
 gi|120588348|gb|ABM31788.1| RNAse III [Acidovorax citrulli AAC00-1]
          Length = 228

 Score =  234 bits (598), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 75/216 (34%), Positives = 109/216 (50%), Gaps = 6/216 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M +   S L+ R+ + F++ SLL++A TH S S    +  ERLEFLGD +L L +S+LL+
Sbjct: 1   MVSPSLSALQDRLQHVFSDPSLLQRATTHRSFS---ADHNERLEFLGDSVLNLAVSSLLY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                  EG+LS    +LV  E    +A  L L   +R+     K       SI AD +E
Sbjct: 58  QRLRDLPEGDLSRVRANLVRQEALHSLALGLQLPQVLRLGEGETKSGGKQRPSILADALE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI A+YLD G + A   V + ++   +        +DAKT LQEW   +    P+Y+V 
Sbjct: 118 ALIGAVYLDAGYQCAEALVHRLYQDVEINPRMPAAEKDAKTALQEWLQGRKMKLPQYRVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQ 213
              G  H   F V  +I  L   + G+  S+RA EQ
Sbjct: 178 ATVGAAHRQTFDVECDIPELGLTERGIGGSRRAGEQ 213


>gi|311742943|ref|ZP_07716751.1| ribonuclease III [Aeromicrobium marinum DSM 15272]
 gi|311313623|gb|EFQ83532.1| ribonuclease III [Aeromicrobium marinum DSM 15272]
          Length = 232

 Score =  234 bits (598), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 70/218 (32%), Positives = 101/218 (46%), Gaps = 5/218 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDS 65
            L   +G    +  LL  ALTH S ++      + ERLEFLGD +LGL+++  LF     
Sbjct: 3   ALRDVLGVPDLDPELLRHALTHRSYAYENGQIPNNERLEFLGDSVLGLVVTDSLFRAHPD 62

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+L+    ++VSA+  + VAR L +   +R+             SI +D VE++I A
Sbjct: 63  LPEGQLAKLRAAVVSAKALAVVARTLGIGDVVRLGRGEETTGGRDKASILSDTVEAVIGA 122

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           ++L  GIE A   V + +      +       D KT LQE A       P Y +   +GP
Sbjct: 123 VFLQFGIERAAEVVHRVFDPVMADAASLGAALDWKTSLQEMAAHHGLGVPRYHLEG-TGP 181

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           DH   FT  V +     A G   SK+ AEQ  A    +
Sbjct: 182 DHARSFTAEVHLGERVFAGGAGRSKKEAEQEVAEIAWR 219


>gi|309776509|ref|ZP_07671491.1| ribonuclease III [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915737|gb|EFP61495.1| ribonuclease III [Erysipelotrichaceae bacterium 3_1_53]
          Length = 227

 Score =  234 bits (598), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 114/228 (50%), Gaps = 8/228 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLIST 57
           M  + +  L+ R   A+++++L+ +AL HSS  + ++      ERLEF+GD +L L  + 
Sbjct: 1   MDTI-FEWLKDR-NIAYSDKTLITQALVHSSYVNEHKSYAHDNERLEFMGDAVLQLWTTK 58

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF       EG+++     LV  E  ++  R+L L  ++ +     K       SI AD
Sbjct: 59  KLFLLEPELSEGQMTTLRAQLVCEEALAEYNRQLGLGKYLMLGVGEEKTGGRQRDSILAD 118

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEY 175
           + E+L+ A++LD G+  A   +       A+   K  +  D KT+LQE+  +    T  Y
Sbjct: 119 MFEALLGAVFLDQGM-AAIDIILSAVVTPAISRPKSEKVIDYKTKLQEYIQSDSRKTVHY 177

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +    SGP + P F V+V +  +   +G   SK+ AEQ+AA +  ++ 
Sbjct: 178 ETVNVSGPSNKPEFEVIVMLDDINLGRGKGFSKKRAEQMAAKDAFEKM 225


>gi|260886608|ref|ZP_05897871.1| ribonuclease III [Selenomonas sputigena ATCC 35185]
 gi|330839558|ref|YP_004414138.1| ribonuclease III [Selenomonas sputigena ATCC 35185]
 gi|260863751|gb|EEX78251.1| ribonuclease III [Selenomonas sputigena ATCC 35185]
 gi|329747322|gb|AEC00679.1| ribonuclease III [Selenomonas sputigena ATCC 35185]
          Length = 242

 Score =  234 bits (598), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 77/222 (34%), Positives = 109/222 (49%), Gaps = 6/222 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHF 63
            L   +G  F N  LL +ALTH+S ++  +       ERLEFLGD +L L  ST LF  F
Sbjct: 18  ELSDHLGIEFQNIVLLHEALTHTSYANEAKNKGVVHNERLEFLGDAVLELATSTYLFERF 77

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            +  EGEL+    S+V   T S+ A EL+L  ++ +             S+ AD  E++I
Sbjct: 78  PNRPEGELTKARASIVREATLSRRAAELELGEYLLLGHGEASMGGGHRPSMLADAFEAVI 137

Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+YLD G + A  +V K        + SG+  +D KT LQE           Y++   +
Sbjct: 138 GAIYLDRGWQTAYDYVLKQLHDELLTIDSGENMKDYKTTLQEVVQKHVDSKIAYELLTET 197

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           GPDHD  F   V I+      G   +K+ AEQ AA E L++ 
Sbjct: 198 GPDHDKTFEFAVRINDAVYGTGKGRNKKEAEQGAAREALRKM 239


>gi|238021755|ref|ZP_04602181.1| hypothetical protein GCWU000324_01658 [Kingella oralis ATCC 51147]
 gi|237866369|gb|EEP67411.1| hypothetical protein GCWU000324_01658 [Kingella oralis ATCC 51147]
          Length = 239

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 71/218 (32%), Positives = 115/218 (52%), Gaps = 6/218 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            + L+K++GY F N +LL++ALTH S    + ++ ERLEF+GD IL   I+ +L++ F  
Sbjct: 11  LAHLQKQLGYTFKNPALLQQALTHRSY---HAQNNERLEFIGDSILDYAIAKMLYHAFPK 67

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG LS     LV   T +++AREL + + + + +   K   +   SI AD VE+L+AA
Sbjct: 68  LPEGRLSPLRAQLVKEATLAEIARELHIGNALYLGTGELKSGGNDRPSILADAVEALLAA 127

Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +  D     A   V + +  R   L +    +D KT+LQE   A+    P+Y++  ++G 
Sbjct: 128 ISFDADFATAEATVQRLFAPRIQQLNTHTQAKDPKTQLQEMLQAQHLPLPKYRIEKQTGE 187

Query: 184 DHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVL 220
            +   F V  ++  L         S+RAAEQ  A + +
Sbjct: 188 GNTALFDVSCDLGQLGKITYAQAHSRRAAEQDCAQQAI 225


>gi|300780910|ref|ZP_07090764.1| ribonuclease III [Corynebacterium genitalium ATCC 33030]
 gi|300532617|gb|EFK53678.1| ribonuclease III [Corynebacterium genitalium ATCC 33030]
          Length = 252

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 70/220 (31%), Positives = 113/220 (51%), Gaps = 5/220 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           + + +++L +R+G       LL+ ALTH S ++ +    + ERLEF+GD +LGL I+  L
Sbjct: 20  AGIDHASLLERLGVD-VEPDLLKLALTHRSFANEHGTLPNNERLEFVGDAVLGLTIANEL 78

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F+ F S  E +LS     +VS    + VAR +DL + + +             SI AD  
Sbjct: 79  FDRFPSRPESDLSPMRARIVSRYGLADVARSIDLGAHVLLGKGEEATGGRKKDSILADTT 138

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E+++ A+Y   G +V    + + +  + +++  + +D KTELQE      G  P Y  T 
Sbjct: 139 EAVLGAIYRQHGFDVTRDVITRLFDDK-IENAHWIQDWKTELQERVAELGGNPPVYTATA 197

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
             GP+H+  FT  V I G+    G   +K+ AEQ +A E 
Sbjct: 198 -KGPEHEQIFTAEVAIDGVRRGVGRGQNKKTAEQNSAREA 236


>gi|320528410|ref|ZP_08029572.1| ribonuclease III [Solobacterium moorei F0204]
 gi|320131324|gb|EFW23892.1| ribonuclease III [Solobacterium moorei F0204]
          Length = 226

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 61/222 (27%), Positives = 103/222 (46%), Gaps = 7/222 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHF 63
              LE R      N  ++++A  HSS +H ++     ERLEF+GD +L L  S  ++   
Sbjct: 6   IEWLESR-HIKVNNAKMIQQAFIHSSYAHEHKNKNDNERLEFMGDAVLQLWSSNAIYPL- 63

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            +  EG ++     LV  +  +   R+L L  ++ + S   K       +I AD+ E+ +
Sbjct: 64  -NLSEGHMTRLRAQLVCEKALAIYGRQLHLNDYLLLGSGEEKTGGRNKDAIIADMFEAFL 122

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRS 181
            AL+LD G++     + +    R           D KT+LQE+  +    T +Y++   +
Sbjct: 123 GALFLDQGMDAVDNILSEVITPRLAHPEDVGVIHDYKTKLQEYVQSDSRQTVKYELVSET 182

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           GP + P F + V + GL    G   SK+ AEQ AA    ++ 
Sbjct: 183 GPSNAPEFVMNVLVDGLVLGTGSGQSKKQAEQNAARNAFEKM 224


>gi|258652105|ref|YP_003201261.1| ribonuclease III [Nakamurella multipartita DSM 44233]
 gi|258555330|gb|ACV78272.1| ribonuclease III [Nakamurella multipartita DSM 44233]
          Length = 249

 Score =  234 bits (598), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 66/199 (33%), Positives = 99/199 (49%), Gaps = 5/199 (2%)

Query: 20  RSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
             L+  ALTH S ++ +    + ERLEFLGD +LG++++  L+      +EG L+    S
Sbjct: 23  PELVVLALTHRSFAYEHGGLPTNERLEFLGDSVLGVVVTETLYRTHPELQEGRLAKLRAS 82

Query: 78  LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137
           +V+    + V R + L   +R+            +SI AD VE++I A+YL  G+EVA  
Sbjct: 83  VVNMHALAGVGRTIGLGDQLRLGKGEELTGGRDKSSIVADAVEAVIGAVYLQHGLEVARA 142

Query: 138 FVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
            V + +      + +     D KT LQE A  +    PEY+V    GPDH   F   V +
Sbjct: 143 VVLRLFADLLATAPQLGAGLDWKTSLQELAAERGLGVPEYRV-SEEGPDHAKVFAARVLL 201

Query: 196 SGLAPAQGMDCSKRAAEQV 214
           SG A   G   +K+ AEQ 
Sbjct: 202 SGSARGTGTGRTKKEAEQN 220


>gi|15639796|ref|NP_219246.1| ribonuclease III (rnc) [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189026034|ref|YP_001933806.1| ribonuclease III [Treponema pallidum subsp. pallidum SS14]
 gi|6094109|sp|O83787|RNC_TREPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|238689343|sp|B2S448|RNC_TREPS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|3323122|gb|AAC65778.1| ribonuclease III (rnc) [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189018609|gb|ACD71227.1| ribonuclease III [Treponema pallidum subsp. pallidum SS14]
 gi|291060165|gb|ADD72900.1| ribonuclease III [Treponema pallidum subsp. pallidum str. Chicago]
          Length = 254

 Score =  234 bits (598), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 110/227 (48%), Gaps = 7/227 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSI-----SHSYQESYERLEFLGDRILGLLISTL 58
                L++ +G  F + + L++AL+H S+      H      ER+EFLGD +LG + +  
Sbjct: 22  ESLRRLQETLGVKFRDPTALDQALSHRSLFSSKEDHCGVRHNERMEFLGDAVLGAVAAAC 81

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L+     + EG+L+     LVS +T S +A  L +  ++ +             +I AD 
Sbjct: 82  LYRALPDSHEGDLAKTKAVLVSTDTLSDIALSLRIDHYLLLGKGEELSGGRHKKAILADA 141

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
            E++I AL+LD G + A  FV +    R   ++      D K+ LQ  AH ++   PEY 
Sbjct: 142 TEAVIGALFLDSGFKAAERFVLRLLLPRVRPIREKNLHHDYKSTLQVLAHQRYRSKPEYT 201

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V  R+GPDH  RF V V +       G   SK++AEQ AA    ++ 
Sbjct: 202 VVKRTGPDHSVRFWVDVTVGDARFGPGYGTSKKSAEQCAARLAWEQL 248


>gi|157737847|ref|YP_001490531.1| ribonuclease III [Arcobacter butzleri RM4018]
 gi|315637636|ref|ZP_07892842.1| ribonuclease III [Arcobacter butzleri JV22]
 gi|189043289|sp|A8EV88|RNC_ARCB4 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|157699701|gb|ABV67861.1| ribonuclease III [Arcobacter butzleri RM4018]
 gi|315478090|gb|EFU68817.1| ribonuclease III [Arcobacter butzleri JV22]
          Length = 224

 Score =  234 bits (597), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 70/207 (33%), Positives = 108/207 (52%), Gaps = 4/207 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            YS LEK + Y F N++L+ +ALTH S    Y  + ERLEFLGD +L L++   L+  F 
Sbjct: 3   DYSKLEKCLDYQFKNKNLIIEALTHKSFKKPY--NNERLEFLGDAVLNLIVGEYLYLKFP 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            + EGELS    SLV+    +++A E+ L  +I +S+   ++      SI +D  E+++ 
Sbjct: 61  KSNEGELSKIRASLVNETGFTRLANEIKLGEYIFISTAEERNKGRTKASILSDAFEAIMG 120

Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YL+ G+      + +  ++    +       D KT LQE   A+F   PEYK+    G
Sbjct: 121 AIYLESGLNTLKPIILRILEESYDKINLDVLFSDYKTALQEITQARFASIPEYKIEGSYG 180

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209
           PDH   F V + I G    +    SK+
Sbjct: 181 PDHKKEFEVSIWIDGKNYGKASGKSKK 207


>gi|330721516|gb|EGG99556.1| Ribonuclease III [gamma proteobacterium IMCC2047]
          Length = 210

 Score =  234 bits (597), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 104/207 (50%), Gaps = 6/207 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           +   + L + +GY F + SLL+ ALTHSS    +    ERLEFLGD ILG +I+  LF  
Sbjct: 2   SQDLAKLSQSLGYQFRDESLLQTALTHSSFGQGH---NERLEFLGDSILGWVIADALFKR 58

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F  A+EG+LS     LV   T ++VAREL L  ++R+     K       SI AD  E++
Sbjct: 59  FPHAREGQLSRLRAGLVKGVTLAKVARELQLGHYLRLGQGEMKSGGFRRDSILADAFEAI 118

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           I A++LD  I      +   +  R          +D KT LQE+  ++    P+Y++   
Sbjct: 119 IGAIFLDSDIATCQQIILVLFAGRLDAQTLDDTLKDPKTRLQEFLQSRKQPLPDYRILST 178

Query: 181 SGPDHDPRFTVVVEISGL-APAQGMDC 206
           SG DH+  F V  E+  +  P +    
Sbjct: 179 SGKDHEQVFRVACEVESIAEPFEAEGT 205


>gi|229061452|ref|ZP_04198797.1| Ribonuclease 3 [Bacillus cereus AH603]
 gi|228717875|gb|EEL69523.1| Ribonuclease 3 [Bacillus cereus AH603]
          Length = 245

 Score =  234 bits (597), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 60/209 (28%), Positives = 97/209 (46%), Gaps = 5/209 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +   ++ IG  F +  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 19  FKVFQEEIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A E+   S + +             ++ ADV E+
Sbjct: 79  KYPTMSEGELTKLRAAIVCEPSLVRFANEMSFGSLVLLGKGEEMTGGRERPALLADVFEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            I ALYLD G+E    ++ +    +  +       D K++LQE          EY++   
Sbjct: 139 FIGALYLDQGLETVWGYLKEVVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQE 198

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            GP H+  F   V ++  A   G   SK+
Sbjct: 199 KGPAHNREFVSRVTLNNEALGLGSGKSKK 227


>gi|85708367|ref|ZP_01039433.1| ribonuclease III [Erythrobacter sp. NAP1]
 gi|85689901|gb|EAQ29904.1| ribonuclease III [Erythrobacter sp. NAP1]
          Length = 232

 Score =  234 bits (597), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 86/218 (39%), Positives = 128/218 (58%), Gaps = 6/218 (2%)

Query: 13  IGYAFANRSLLEKALTHSSISHSY------QESYERLEFLGDRILGLLISTLLFNHFDSA 66
           IG+   + S+  +ALTH S + ++      +  Y+RLEFLGDR+LGL +++ LF   D +
Sbjct: 15  IGFEVKDGSMWLEALTHGSFNSTHTATGQPEADYQRLEFLGDRVLGLSVASWLFRSSDRS 74

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           KEG+LS R N+LVS  TC+++AR + L+  IR+    R+D  S   +I  DV+E++I A 
Sbjct: 75  KEGQLSQRLNALVSGATCARIARTIGLSDHIRLGKQAREDGGSDSDNILGDVMEAIIGAS 134

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           +LD G +     + + W+          +  K+ LQEWA       P+Y V  RSGPDH 
Sbjct: 135 FLDNGFDTTRAIILELWEPELAGDAGKAKHPKSALQEWAAGNRRAMPQYDVIDRSGPDHA 194

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            RFTV V I  +  A+G+  SK  AE++AAAE L++ G
Sbjct: 195 ARFTVRVSIHKVGEAEGVATSKHEAEKLAAAEFLEKYG 232


>gi|322378529|ref|ZP_08052977.1| ribonuclease III [Helicobacter suis HS1]
 gi|321149043|gb|EFX43495.1| ribonuclease III [Helicobacter suis HS1]
          Length = 216

 Score =  234 bits (597), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 68/212 (32%), Positives = 104/212 (49%), Gaps = 4/212 (1%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           GY F +  LL++ALTH S      ++ ERLEFLGD +L L+++ +LF  F   +EG+LS 
Sbjct: 2   GYVFKDPLLLQQALTHRST--KAHKNNERLEFLGDAVLDLVVAEILFTRFTDLQEGDLSK 59

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
              SLV+ +   ++A  L+L   I +S     +      SI +   E+L+ A+YL+ G+E
Sbjct: 60  MRASLVNEKAFFKLALSLNLQDHILISQAEANNNGHTKPSILSSAFEALMGAIYLESGLE 119

Query: 134 VAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
           +    +          L       D K+ LQE   A+F   P Y +   SGPDH  +F +
Sbjct: 120 IIKNLIQDLLDMAYPNLSPKTLFMDYKSALQELTQARFKAIPIYALKSESGPDHAKQFEM 179

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            + I           SK+ AEQ+ A    K+ 
Sbjct: 180 QIFILNKLYGTCKAGSKKQAEQLCAQVAYKQL 211


>gi|312879974|ref|ZP_07739774.1| ribonuclease III [Aminomonas paucivorans DSM 12260]
 gi|310783265|gb|EFQ23663.1| ribonuclease III [Aminomonas paucivorans DSM 12260]
          Length = 232

 Score =  234 bits (597), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 64/213 (30%), Positives = 105/213 (49%), Gaps = 7/213 (3%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           + + Y F  + LL +ALTH+S ++        ERLEFLGD +L L +S  L+     A+E
Sbjct: 13  RALRYRFHRQELLTEALTHASFANESGLSRCNERLEFLGDAVLELCVSERLYRERPDAEE 72

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+L+   ++LV A   ++  R   + + + +    R+       ++ AD  E+++ A+YL
Sbjct: 73  GDLTRWRSALVCAPNLARWGRLWGIPACLLLGKGFRRGGP--NENMVADAFEAVLGAIYL 130

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           DGG++     +        L+ G   +D K+ LQE    +    P Y++  +SGP H+  
Sbjct: 131 DGGLDAVREVLHPLPLPEVLEEG---KDPKSRLQEVLQGQGHPCPRYELREQSGPPHERW 187

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           F V V       A G   S R AE+ AA   L+
Sbjct: 188 FVVEVSCGEQVLASGEGRSLREAERCAANRALE 220


>gi|77359683|ref|YP_339258.1| RNase III, ds RNA [Pseudoalteromonas haloplanktis TAC125]
 gi|76874594|emb|CAI85815.1| RNase III, ds RNA [Pseudoalteromonas haloplanktis TAC125]
          Length = 200

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 68/197 (34%), Positives = 102/197 (51%), Gaps = 5/197 (2%)

Query: 27  LTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQ 86
           +TH S      +  ERLEFLGD IL  +I+  L+  F  A+EG+LS   ++LV  +T ++
Sbjct: 1   MTHRS---HKGQHNERLEFLGDSILSFVIANALYAKFPKAREGDLSRMRSTLVRGQTLAE 57

Query: 87  VARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQR 146
              E  L  ++R+     K       S  AD VE++I A++LD  IE  G  +  ++++R
Sbjct: 58  FGLEFGLGDYLRLGPGELKSGGFRRESTLADAVEAIIGAVFLDSDIERCGELILSWYEER 117

Query: 147 --ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
             A+  G  ++D KT LQE   A+    P Y V    G  H+  FTV   + G+     +
Sbjct: 118 LNAISPGLNQKDPKTLLQEHLQARKLSLPGYTVVDTKGQAHNQTFTVECIVDGMDSIISV 177

Query: 205 DCSKRAAEQVAAAEVLK 221
             S+R AEQ AA + LK
Sbjct: 178 GSSRRKAEQKAAEKALK 194


>gi|326316027|ref|YP_004233699.1| ribonuclease 3 [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323372863|gb|ADX45132.1| Ribonuclease 3 [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 228

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 77/216 (35%), Positives = 111/216 (51%), Gaps = 6/216 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M +   S L+ R+ +AF++ SLL++A+TH S S    +  ERLEFLGD +L L +S+LL+
Sbjct: 1   MVSPSLSALQDRLQHAFSDPSLLQRAITHRSFS---ADHNERLEFLGDSVLSLAVSSLLY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                  EG+LS    +LV  E    +A  L L   +R+     K       SI AD +E
Sbjct: 58  QRLRDLPEGDLSRVRANLVRQEALHDLALGLQLPQVLRLGEGETKSGGKQRPSILADALE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI A+YLD G + A   V + +K   +        +DAKT LQEW   +    P+Y+V 
Sbjct: 118 ALIGAVYLDAGYQCAEALVHRLYKDVEINPRMQAAEKDAKTALQEWLQGRKMKLPQYRVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQ 213
              G  H   F V  +I  L   + G+  S+RA EQ
Sbjct: 178 ATVGAAHRQTFDVECDIPELGLTERGIGGSRRAGEQ 213


>gi|294507352|ref|YP_003571410.1| Ribonuclease III [Salinibacter ruber M8]
 gi|294343680|emb|CBH24458.1| Ribonuclease III [Salinibacter ruber M8]
          Length = 243

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 71/223 (31%), Positives = 99/223 (44%), Gaps = 6/223 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62
           + +E+ +G    + S   +ALTH S+   +      S ERLEFLGD +L + +  +L++ 
Sbjct: 14  AAIEQLVGRPVDDLSHYRRALTHRSLLRVHPARTFRSNERLEFLGDALLDVFVGEVLYDR 73

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L+     LVS    +  AR L L   + +S +  +       SI AD  E+ 
Sbjct: 74  FPEKDEGALTRLRARLVSERPLATYARGLGLGPHLLMSENAAEGDGRDNPSILADAFEAF 133

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD--AKTELQEWAHAKFGVTPEYKVTFR 180
           + A+YLD G E A  FV               RD   K++L E   A     P Y V   
Sbjct: 134 VGAVYLDLGHEAARGFVQDRVLAPVDLEDVATRDDNYKSQLLEHLQALGRPQPTYHVVEE 193

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            GP HD  FTV V +      +G   SK+ AEQ AA   L   
Sbjct: 194 KGPSHDKTFTVEVRVGDADYERGTAGSKQDAEQQAARRTLDEM 236


>gi|325290420|ref|YP_004266601.1| RNAse III [Syntrophobotulus glycolicus DSM 8271]
 gi|324965821|gb|ADY56600.1| RNAse III [Syntrophobotulus glycolicus DSM 8271]
          Length = 259

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 64/220 (29%), Positives = 102/220 (46%), Gaps = 6/220 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLFNH 62
           +    ++G       LL  ALTH S +       +E+ +RLEFLGD +L  +I   L+  
Sbjct: 34  TAFITKLGLENPENQLLYTALTHPSYTFENPASGRENNQRLEFLGDAVLDFVIGEYLYLK 93

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +    EGEL+    ++V+  T ++ AR + +   + +    +        SI AD +E++
Sbjct: 94  YRDKPEGELTKMRAAVVNESTLARQARGIGIGQALFLGKGEQYSGGRERASILADALEAV 153

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFRS 181
           I A+YL  G E   +F+ K          K    D KT LQE A  +  +   Y++    
Sbjct: 154 IGAVYLQYGFEEVRSFILKMLVPEIEAIDKGNYGDFKTILQERAQKE-DMEVSYRIIDEQ 212

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           GPDH+  FT  V +      +G   +K+ AEQ AA   L+
Sbjct: 213 GPDHNKLFTAGVYVQNNFYGKGTGKTKKEAEQHAARLALE 252


>gi|148272538|ref|YP_001222099.1| ribonuclease III [Clavibacter michiganensis subsp. michiganensis
           NCPPB 382]
 gi|147830468|emb|CAN01403.1| ribonuclease III [Clavibacter michiganensis subsp. michiganensis
           NCPPB 382]
          Length = 238

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 76/208 (36%), Positives = 99/208 (47%), Gaps = 5/208 (2%)

Query: 20  RSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
             LLE ALTH S ++ +      ERLEFLGD ILG  ++ +L+       EGEL+ R  S
Sbjct: 26  PELLELALTHRSYAYEHGGIPHNERLEFLGDSILGQAVTVMLYLENPDLDEGELAKRRAS 85

Query: 78  LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137
           LVS+   ++VA  + L   + +            +SI AD VE++I A YLD G E A  
Sbjct: 86  LVSSVALAEVATRIGLGEHLLLGRGEELTGGRAKSSILADTVEAIIGASYLDAGGEAATG 145

Query: 138 FVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
            V +          +F    D KT LQE A  +    P Y V+  SGPDH  RF  VV +
Sbjct: 146 LVLRLIAPLLEDPARFGAAMDPKTALQESAARQGLPAPVYDVSD-SGPDHSKRFHAVVTV 204

Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                  G   SK+ AE  AA E   R 
Sbjct: 205 GDAVRTTGEGSSKKQAEMTAALEAWTRL 232


>gi|92117774|ref|YP_577503.1| ribonuclease III [Nitrobacter hamburgensis X14]
 gi|91800668|gb|ABE63043.1| RNAse III [Nitrobacter hamburgensis X14]
          Length = 266

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 88/203 (43%), Positives = 121/203 (59%), Gaps = 3/203 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           + +E+R+G+ FA+ SLL  A TH S    S    +SY+RLEFLGD +LGL++S +L+  F
Sbjct: 44  AAIEQRLGHKFADMSLLTTAFTHVSALKSSRGRSDSYQRLEFLGDHVLGLVVSDMLYRAF 103

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EGELS R   LV  ETC  VA+ LDL   I++ +           S+  D+ E++I
Sbjct: 104 PKADEGELSKRLAELVRKETCIDVAKSLDLQDGIKLGAVGAGAGARLRRSVLGDICEAVI 163

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            A+YLDGG   A  FV++ W +R  K  +  RD KT LQEWA  +   TP Y+   R+GP
Sbjct: 164 GAVYLDGGYAAAAAFVERNWLERMRKPVRPLRDPKTVLQEWAQGQGLPTPVYREVERTGP 223

Query: 184 DHDPRFTVVVEISGLAPAQGMDC 206
            HDPRF V VE+ GL  ++G+  
Sbjct: 224 HHDPRFRVAVELPGLEASEGIGG 246


>gi|91775216|ref|YP_544972.1| ribonuclease III [Methylobacillus flagellatus KT]
 gi|91775360|ref|YP_545116.1| ribonuclease III [Methylobacillus flagellatus KT]
 gi|91709203|gb|ABE49131.1| RNAse III [Methylobacillus flagellatus KT]
 gi|91709347|gb|ABE49275.1| RNAse III [Methylobacillus flagellatus KT]
          Length = 248

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 70/209 (33%), Positives = 104/209 (49%), Gaps = 6/209 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           L  ++L +++ Y F ++ LL  ALTH S S     + ERLEFLGD +L  L++  LF  F
Sbjct: 23  LSQNSLVRQLAYEFKDKGLLTLALTHRSYS---GSNNERLEFLGDGVLNFLVAHQLFLRF 79

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS     LV  +T S++A EL +  F+R+     K       S+ AD +E++I
Sbjct: 80  PKLPEGDLSRLRAQLVKEQTLSEIATELSVGEFLRLGEGELKSGGWRRPSVLADAMEAII 139

Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG   A   V + +  R   +      +DAK+ LQE+   +    PEY V    
Sbjct: 140 GAVFLDGGYPAAEALVKRLFLPRMEGIDPKAIGKDAKSLLQEFLQGRKIDLPEYNVLATE 199

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKR 209
           G  H   F V   I+      +G   S+R
Sbjct: 200 GEAHCQTFRVSCHITKFQITTEGKGSSRR 228


>gi|326561464|gb|EGE11814.1| ribonuclease III [Moraxella catarrhalis 46P47B1]
 gi|326562236|gb|EGE12564.1| ribonuclease III [Moraxella catarrhalis 7169]
 gi|326567190|gb|EGE17312.1| ribonuclease III [Moraxella catarrhalis BC1]
 gi|326568472|gb|EGE18552.1| ribonuclease III [Moraxella catarrhalis BC7]
          Length = 262

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 113/224 (50%), Gaps = 10/224 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L  ++GY F + SLL +ALTH S     ++SYERLEFLGD +L  +I+  LF  +    E
Sbjct: 35  LYAKLGYTFKDVSLLCRALTHRSY--DPKKSYERLEFLGDALLSSIITKALFAQYPKHDE 92

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+L+    +LV  ET  Q+A  L+L+ ++ +    RK       SI AD VE+LIAA+YL
Sbjct: 93  GKLTRMRAALVRQETLVQIADHLELSRYLILGVGERKGGGRHRASILADAVEALIAAVYL 152

Query: 129 DG----GIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           D     G  +    V  ++K    + G+ +  +DAK+ LQE         P Y++    G
Sbjct: 153 DNLNSDGENIIHRMVMDWYKDLIQEVGQEQVLKDAKSRLQELLQGNRLPLPTYELIQTLG 212

Query: 183 PDHDPRFTVVVE--ISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              +  F V     + G+ P      S+R AEQ  A  ++ +  
Sbjct: 213 SAPNQVFVVRCHCTVVGVDPIIETGASRRIAEQKCAERMINQLN 256


>gi|83814847|ref|YP_445467.1| ribonuclease III [Salinibacter ruber DSM 13855]
 gi|83756241|gb|ABC44354.1| ribonuclease III [Salinibacter ruber DSM 13855]
          Length = 248

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 100/223 (44%), Gaps = 6/223 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62
           + +E+ +G    + S   +ALTH S+   +      S ERLEFLGD +L + +  +L++ 
Sbjct: 19  AAIEQLVGRPVDDLSHYRRALTHRSLLRVHPARTFRSNERLEFLGDALLDVFVGEVLYDR 78

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L+     LVS    +  AR L L   + +S +  +       SI AD  E+ 
Sbjct: 79  FPEKDEGALTRLRARLVSERPLATYARGLGLGPHLLMSENAAEGDGRDNPSILADAFEAF 138

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD--AKTELQEWAHAKFGVTPEYKVTFR 180
           + A+YLD G E A  FV               RD   K++L E   A     P Y V   
Sbjct: 139 VGAVYLDLGHEAARGFVQDRVLAPVDLEDVATRDDNYKSQLLEHLQALGRPQPTYHVVEE 198

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            GP HD  FTV V +   A  +G   SK+ AEQ AA   L   
Sbjct: 199 KGPSHDKTFTVEVRVGDAAYERGTAGSKQDAEQQAARRTLDEM 241


>gi|325000484|ref|ZP_08121596.1| RNAse III [Pseudonocardia sp. P1]
          Length = 249

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 99/227 (43%), Gaps = 14/227 (6%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
           S L   +G    +  LL  ALTH S ++ +    + ERLEFLGD +L ++I+  L+    
Sbjct: 14  SPLLSALGVEL-DEELLTLALTHRSYAYEHGGLPTNERLEFLGDSVLSIVITERLYRDHP 72

Query: 65  SAKEGELSVRFNSLVSAETCSQVAREL--------DLASFIRVSSDLRKDVCSFMTSIQA 116
              EG+L+    S+V+    + VA  L         L +++ +             SI A
Sbjct: 73  DLPEGQLAKLRASVVNMHALAGVAVALPTPGESSDGLGAYLYLGRGEELTGGRSKASILA 132

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPE 174
           D  E+L+ A+YL  G+E +   V + +      +       D KT LQE   A     PE
Sbjct: 133 DATEALLGAVYLQHGLEPSRELVHRLFADLLHSAPLLGAGLDWKTSLQELTAAGGHGVPE 192

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           Y+     GPDH   FT    + G     G   +K+ AEQ AA    +
Sbjct: 193 YR-IDEEGPDHLKVFTATAVVGGRDLGSGAGRTKKEAEQKAAELAWR 238


>gi|227503342|ref|ZP_03933391.1| ribonuclease III [Corynebacterium accolens ATCC 49725]
 gi|227075845|gb|EEI13808.1| ribonuclease III [Corynebacterium accolens ATCC 49725]
          Length = 256

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 111/224 (49%), Gaps = 6/224 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLL 59
           +A+ +S L + +G A      L  ALTH S ++   +  + ERLEFLGD +LGL ++  L
Sbjct: 18  AAVDHSPLLESLGVALE-PENLRLALTHRSFANENGHLPNNERLEFLGDAVLGLSVAAKL 76

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  + S  E ++S    S+VS    S +ARE++L   I +    +        SI AD  
Sbjct: 77  YVTYPSRPESDISKMRASIVSRYGLSDIAREINLGPHILLGKGEQSTGGRDKDSILADTT 136

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177
           E++  A+Y + G E A   + + + ++   +    R  D KT LQE         P Y  
Sbjct: 137 EAIFGAIYREHGFETARDVILRLFAEKIDNASVSGRHLDWKTTLQELCAELKAPMPVYSA 196

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           T  +GP+HD  F+ V  ++GL    G   +K+ AEQ AA E  +
Sbjct: 197 TA-TGPEHDQTFSAVATVAGLTVGNGQGHNKKLAEQQAAQEACQ 239


>gi|326576294|gb|EGE26209.1| ribonuclease III [Moraxella catarrhalis CO72]
          Length = 262

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 113/224 (50%), Gaps = 10/224 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L  ++GY F + SLL +ALTH S     ++SYERLEFLGD +L  +I+  LF  +    E
Sbjct: 35  LYAKLGYTFKDVSLLCRALTHRSY--DPKKSYERLEFLGDALLSSIITKALFAQYPKHDE 92

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+L+    +LV  ET  Q+A  L+L+ ++ +    RK       SI AD VE+LIAA+YL
Sbjct: 93  GKLTRMRAALVRQETLVQIADHLELSRYLILGVGERKGGGRHRASILADAVEALIAAVYL 152

Query: 129 DG----GIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           D     G  +    V  ++K    + G+ +  +DAK+ LQE         P Y++    G
Sbjct: 153 DNLNSDGENIIHRMVMDWYKDLIQEVGQEQVLKDAKSRLQELLQGNRLPLPTYELIQTLG 212

Query: 183 PDHDPRFTVVVE--ISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              +  F V     + G+ P      S+R AEQ  A  ++ +  
Sbjct: 213 SAPNQVFVVRCHCTVVGVDPIIETGASRRIAEQKCAERMINQLN 256


>gi|219669830|ref|YP_002460265.1| ribonuclease III [Desulfitobacterium hafniense DCB-2]
 gi|219540090|gb|ACL21829.1| Ribonuclease III [Desulfitobacterium hafniense DCB-2]
          Length = 262

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 64/209 (30%), Positives = 101/209 (48%), Gaps = 6/209 (2%)

Query: 21  SLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
            L   ALTH S          E+ +RLEFLGD IL  +++  L+  +    EGEL+    
Sbjct: 50  RLFTTALTHPSYLFENPQSGLENNQRLEFLGDAILDFVVAEYLYLSYPERPEGELTKMRA 109

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           ++V+  T ++ A+++ L   + +    +        SI AD  E+++ A+YL  G + A 
Sbjct: 110 AVVNESTLARTAKKIRLGEELLLGKGEQVSGGRERPSILADAWEAIVGAVYLQYGFQEAR 169

Query: 137 TFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
             V    K+   +  +    D KT LQE A  +      Y++    GPDH+ RFT  V +
Sbjct: 170 RVVLTLLKEEIAEVAQGNYGDYKTMLQEKAQ-REETEVTYRILAEEGPDHNKRFTAGVFL 228

Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            G    +G+  +K+ AEQ AA +VL   G
Sbjct: 229 QGNLRGKGIGRTKKEAEQRAAQQVLDEFG 257


>gi|306836417|ref|ZP_07469394.1| ribonuclease III [Corynebacterium accolens ATCC 49726]
 gi|304567698|gb|EFM43286.1| ribonuclease III [Corynebacterium accolens ATCC 49726]
          Length = 256

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 112/224 (50%), Gaps = 6/224 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLL 59
           +A+ +S L + +G A      L  ALTH S ++   +  + ERLEFLGD +LGL ++  L
Sbjct: 18  AAVDHSPLLESLGVALE-PENLRLALTHRSFANENGHLPNNERLEFLGDAVLGLSVAAKL 76

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  + S  E ++S    S+VS    S +ARE++L   I +    +        SI AD  
Sbjct: 77  YVTYPSRPESDISKMRASIVSRYGLSDIAREINLGPHILLGKGEQSTGGRDKDSILADTT 136

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177
           E++  A+Y + G E A   + + + ++   +    R  D KT LQE         P Y  
Sbjct: 137 EAIFGAIYREHGFETARDVILRLFAEKIDNASVSGRHLDWKTTLQELCAELKAPMPVYSA 196

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           T  +GP+HD  F+ V  ++GL+   G   +K+ AEQ AA E  +
Sbjct: 197 TA-TGPEHDQTFSAVATVAGLSVGNGQGHNKKLAEQQAAQEACQ 239


>gi|293604014|ref|ZP_06686427.1| ribonuclease III [Achromobacter piechaudii ATCC 43553]
 gi|292817618|gb|EFF76686.1| ribonuclease III [Achromobacter piechaudii ATCC 43553]
          Length = 253

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 69/213 (32%), Positives = 107/213 (50%), Gaps = 6/213 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  +TLE R+ + F + +LLE+ALTH S         ERLEFLGD +L  +++ +LF  +
Sbjct: 1   MSLATLENRLDHHFGDPALLEQALTHRS---HGARHNERLEFLGDSVLNFVVAAMLFERY 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV   + + +A+ L+L+ ++R+     K       SI AD VE+L 
Sbjct: 58  SKIDEGDLSRLRANLVKQASLADIAQRLELSQYLRLGEGELKSGGFRRPSILADTVEALF 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LD G + A   + + ++     +      +DAKT LQE+   +    P Y V    
Sbjct: 118 GAVFLDAGFDAARRVIVRQYQPVLASVDPKTLGKDAKTLLQEFLQGRKLALPLYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQ 213
           G  H  +F V   I  L         S+RAAEQ
Sbjct: 178 GAAHSQQFEVECAIPALEIKVTAPGASRRAAEQ 210


>gi|119358263|ref|YP_912907.1| ribonuclease III [Chlorobium phaeobacteroides DSM 266]
 gi|119355612|gb|ABL66483.1| RNAse III [Chlorobium phaeobacteroides DSM 266]
          Length = 273

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 75/212 (35%), Positives = 109/212 (51%), Gaps = 8/212 (3%)

Query: 19  NRSLLEKALTHSSISHSYQ------ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           N  L + ALTH S+ H Y+      +S +RLEFLGD +LGLLIS  LF +F  ++EGELS
Sbjct: 54  NLFLYQTALTHRSVVHDYEHATPAVQSNQRLEFLGDAVLGLLISDYLFRNFPDSREGELS 113

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                +V+ ++ +  AR + L   + +     K+      S  AD  ESLI A+YLD G+
Sbjct: 114 SNRAKIVNRKSLAGFARSIGLGKHLIIGESADKNKIRSSESALADAFESLIGAIYLDKGL 173

Query: 133 EVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           + A  FV K   + A          + K++L E+  +     P YKV    G +H+  FT
Sbjct: 174 DAAFAFVMKQITEHADFRSIVAAEHNYKSQLIEYTQSHHLPPPVYKVIAEEGAEHEKTFT 233

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           + V +      QG    K+ AEQ+AA E + R
Sbjct: 234 IEVSVDDRQMGQGTAPRKKDAEQLAAREAIDR 265


>gi|225850066|ref|YP_002730300.1| ribonuclease III [Persephonella marina EX-H1]
 gi|225645108|gb|ACO03294.1| ribonuclease III [Persephonella marina EX-H1]
          Length = 249

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 115/224 (51%), Gaps = 8/224 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLF 60
            R   LE+++GY F +++L   ALTHSS +  Y +    YE LEFLGD +L L++S +L 
Sbjct: 11  ERIKKLEQKLGYVFKDKNLPLTALTHSSFAAEYHKEIKDYEVLEFLGDAVLSLIVSEILI 70

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EGELS   ++++S    S++AR L L   + +S            S+  DV E
Sbjct: 71  KTFPEASEGELSQTRSAVISEAYLSRLARILGLNELVLLSRGEIAQKGMERESLLCDVFE 130

Query: 121 SLIAALYLDGGIE--VAGTFVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
           S+  A+Y+D   +  +     ++++K     ++K G   RD K+ LQ      FGV P+Y
Sbjct: 131 SVFGAVYVDCDYDIKIPREIFNRFFKDYLIESIKKGNIPRDYKSILQIMTQRLFGVVPKY 190

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            +    GP+H+  FT+   +  +    G   SK+ AE  AA + 
Sbjct: 191 SMVSAEGPEHEKIFTMECSVDNVVRTFGTGKSKKEAETEAAKKA 234


>gi|99082399|ref|YP_614553.1| RNAse III [Ruegeria sp. TM1040]
 gi|99038679|gb|ABF65291.1| RNAse III [Ruegeria sp. TM1040]
          Length = 242

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 76/202 (37%), Positives = 117/202 (57%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             + R+G+ F++  LL +ALTH S+S   ++  +RLEFLGDR+LGL+++T L  H   A 
Sbjct: 23  AFQARLGHEFSSPELLIRALTHPSVSSPNRQDNQRLEFLGDRVLGLVMATALLEHDKDAT 82

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG+L+ RFN+LV  ETC+ VAR++DL + +++             ++  D +E++IAA+Y
Sbjct: 83  EGQLAPRFNALVRKETCADVARQIDLGAVLKLGRSEMLSGGRRKQALLGDAMEAVIAAVY 142

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
            D G E A + + + W +R     +  RD KT LQE+  A+    P Y +  R GPDH+P
Sbjct: 143 RDAGFEAAQSVILRLWGKRVGTVEEDARDPKTALQEFVQARRQPPPAYVLVARKGPDHEP 202

Query: 188 RFTVVVEISGLAPAQGMDCSKR 209
            FT+   +      Q    SKR
Sbjct: 203 IFTIAARLEDGTEEQATAGSKR 224


>gi|163941587|ref|YP_001646471.1| ribonuclease III [Bacillus weihenstephanensis KBAB4]
 gi|229013032|ref|ZP_04170197.1| Ribonuclease 3 [Bacillus mycoides DSM 2048]
 gi|229134657|ref|ZP_04263466.1| Ribonuclease 3 [Bacillus cereus BDRD-ST196]
 gi|229564349|sp|A9VT87|RNC_BACWK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|163863784|gb|ABY44843.1| Ribonuclease III [Bacillus weihenstephanensis KBAB4]
 gi|228648703|gb|EEL04729.1| Ribonuclease 3 [Bacillus cereus BDRD-ST196]
 gi|228748286|gb|EEL98146.1| Ribonuclease 3 [Bacillus mycoides DSM 2048]
          Length = 245

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 60/209 (28%), Positives = 97/209 (46%), Gaps = 5/209 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +   ++ IG  F +  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 19  FKVFQEEIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A E+   S + +             ++ ADV E+
Sbjct: 79  KYPTMSEGELTKLRAAIVCEPSLVRFANEMSFGSLVLLGKGEEMTGGRERPALLADVFEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            I ALYLD G+E    ++ +    +  +       D K++LQE          EY++   
Sbjct: 139 FIGALYLDQGLETVWGYLKEVVYPKINEGAFSHVMDYKSQLQELIQRDGSGNVEYQILQE 198

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            GP H+  F   V ++  A   G   SK+
Sbjct: 199 KGPAHNREFVSRVTLNNEALGLGSGKSKK 227


>gi|50840533|gb|AAT83200.1| ribonuclease III [Propionibacterium acnes KPA171202]
          Length = 366

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 63/218 (28%), Positives = 103/218 (47%), Gaps = 6/218 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
           +  L + +G    +  LL+ ALTH S +       + ERLEFLGD IL + ++  L+  F
Sbjct: 139 FLALLEELGIR-CDPQLLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAF 197

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+L+   +++VS  +  ++AR+L +   I++     +      TSI AD  E+L+
Sbjct: 198 PDKPEGQLAKLRSAVVSTVSLGRLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALL 257

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+ L  G+      V   +     ++ +     D KT LQE+        P Y++   S
Sbjct: 258 GAVELSAGLPNVLRLVHHLFDPLVDEADRSGAGTDWKTVLQEYCAEHGFDAPRYEIVG-S 316

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           GPDH+ R+     + G   A     +K+ AEQ AA   
Sbjct: 317 GPDHNRRYCARANVDGRLHAAYTGHNKKEAEQGAARRA 354


>gi|114327656|ref|YP_744813.1| ribonuclease III [Granulibacter bethesdensis CGDNIH1]
 gi|114315830|gb|ABI61890.1| ribonuclease III [Granulibacter bethesdensis CGDNIH1]
          Length = 258

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 80/222 (36%), Positives = 116/222 (52%), Gaps = 12/222 (5%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISH-----------SYQESYERLEFLGDRILGLLISTL 58
           E  + + FA R LL +ALTH S                  S ERLEF+GDR+LGL+++  
Sbjct: 23  EALLSHRFARRDLLAEALTHRSAVKIMHGQTGQSLPRGAGSNERLEFVGDRVLGLVVAEW 82

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L   F   +EGEL  R   LVS    + +A +  L   + V+    K     + ++ +D 
Sbjct: 83  LVERFPLEQEGELGRRLAHLVSQPVLAGIAEQSGLPQILSVAPGEAKAGVRKLATVLSDA 142

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +E+LI ALYLD G++    F+ ++W+    +  +  +DAKT LQEWA       P Y++ 
Sbjct: 143 MEALIGALYLDAGLDPVRQFIRRHWEPVMQRQTEPPKDAKTALQEWAQGLGLHLPTYRLA 202

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            R GP H+P F V V +      QG   SKRAAEQ+AA ++L
Sbjct: 203 RREGPPHNPVFWVEVLVGDHV-GQGQAGSKRAAEQLAAQDLL 243


>gi|159042756|ref|YP_001531550.1| ribonuclease III [Dinoroseobacter shibae DFL 12]
 gi|189043308|sp|A8LLD9|RNC_DINSH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|157910516|gb|ABV91949.1| ribonuclease III [Dinoroseobacter shibae DFL 12]
          Length = 229

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 80/207 (38%), Positives = 115/207 (55%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           +   S    RIG+ F    LL +ALTH+S S + +   +RLEFLGDR+LGL+++  L   
Sbjct: 4   SKEISAFCDRIGHRFDRPELLVRALTHASRSTAGRSDNQRLEFLGDRVLGLVMAEALLEA 63

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
              A+EG+L+ R+N+LV  ETC++VARE+ L   +R+             ++  D +E++
Sbjct: 64  DPQAREGQLAPRYNALVRKETCAEVAREIGLGDVLRLGRSEMLTGGRRKDALLGDGMEAV 123

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           IAA+Y D G E A   + + W +R        RD KT LQEWA A+    P Y  + RSG
Sbjct: 124 IAAVYRDAGFEAAKALILRLWGKRIGAVEADARDPKTALQEWAQARGLPPPAYIESARSG 183

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209
           PDH P FT+   +   A A+    SKR
Sbjct: 184 PDHAPVFTISARLETGACAEAQAGSKR 210


>gi|302342152|ref|YP_003806681.1| ribonuclease III [Desulfarculus baarsii DSM 2075]
 gi|301638765|gb|ADK84087.1| ribonuclease III [Desulfarculus baarsii DSM 2075]
          Length = 237

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 84/220 (38%), Positives = 119/220 (54%), Gaps = 5/220 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNH 62
              L  ++G+ F++ + L++AL HSS  H       S ERLEFLGD +L L+++  LF  
Sbjct: 9   LKQLADQVGHGFSDWTALDEALRHSSFVHENPQRGPSNERLEFLGDAVLELVVTQELFLR 68

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           FD A EG+LS   +S+V+    ++ AR++DL   I +    +       TSI AD +E++
Sbjct: 69  FDQASEGQLSRARSSVVNEARLAEAARQIDLGPCILLGKGEQGQGGQEKTSILADALEAV 128

Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +AA+YLDGG+E A   V          +     RRD KT LQE       +TP Y+    
Sbjct: 129 LAAVYLDGGLEAARDCVLALLGPLDERVIDRAPRRDYKTMLQERVQEDLRLTPRYRTIDE 188

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           SGPDHD  F+V +EI+    A G   SK+ AEQ AA   L
Sbjct: 189 SGPDHDKTFSVSIEINDRQLAMGAGKSKKEAEQNAARRGL 228


>gi|86135727|ref|ZP_01054306.1| ribonuclease III [Roseobacter sp. MED193]
 gi|85826601|gb|EAQ46797.1| ribonuclease III [Roseobacter sp. MED193]
          Length = 222

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 78/201 (38%), Positives = 114/201 (56%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            E+RIG+ F    LL +ALTH S+S   ++  +RLEFLGDR+LGL+++T L +H   A E
Sbjct: 4   FEQRIGHQFVRPELLVRALTHPSVSSPNRKDNQRLEFLGDRVLGLVMATALLDHDKDASE 63

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+L+ RFN+LV  E C+ VARE++L   +++             ++  D +E++IAA+Y 
Sbjct: 64  GQLAPRFNALVRKEACADVAREIELGEVLKLGRSEMMSGGRRKLALLGDGMEAVIAAVYK 123

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           D G EVA   + + W  R  +     RD KT LQE+  A+    P Y    R+GPDH P 
Sbjct: 124 DAGFEVAQAMILRLWGARIHQVEADARDPKTALQEYVQARRQNPPAYVQVARTGPDHQPI 183

Query: 189 FTVVVEISGLAPAQGMDCSKR 209
           FT+ V +      +    SKR
Sbjct: 184 FTIAVRLEDGTEERATAGSKR 204


>gi|296120504|ref|YP_003628282.1| ribonuclease III [Planctomyces limnophilus DSM 3776]
 gi|296012844|gb|ADG66083.1| ribonuclease III [Planctomyces limnophilus DSM 3776]
          Length = 263

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 77/222 (34%), Positives = 117/222 (52%), Gaps = 3/222 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  +  E R+GY F +  LL +AL+H+S + +  ES ERLEFLGD ILG  +  LLF  +
Sbjct: 8   VPLTECEARLGYHFRSPELLMQALSHASAAKTRLESNERLEFLGDAILGAAVCDLLFRKY 67

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             + EGEL+   + +VS   C  +A+EL L  F+ +   L     +   SI +   ES+I
Sbjct: 68  PKSTEGELTRIKSFVVSRHVCGLLAKELHLDQFVIIGKGLCGT-PNVPVSILSATFESVI 126

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA++LDGG + A  F+ +  +    +    ++ R+ K+ LQ++A    G TP Y +    
Sbjct: 127 AAVFLDGGFDAAKEFIIRLIEPHVEQMVGAEYGRNYKSVLQQYAQKTLGETPRYDLLKEY 186

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           GPDH   F V   +  +  A     +K+ AEQ AAA  L   
Sbjct: 187 GPDHLKYFKVSAALGEVVYAAAWGINKKEAEQKAAANALSEL 228


>gi|84515163|ref|ZP_01002526.1| ribonuclease III [Loktanella vestfoldensis SKA53]
 gi|84511322|gb|EAQ07776.1| ribonuclease III [Loktanella vestfoldensis SKA53]
          Length = 226

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 82/207 (39%), Positives = 119/207 (57%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           +   ++  +R+GY+F    LL +++THSS+   +++  +RLEFLGDR+LGL+++  L   
Sbjct: 4   SADLASFSQRLGYSFVRPDLLVRSVTHSSMVSIHRDDNQRLEFLGDRVLGLVMAEALLKA 63

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
             SA EG L+ R+N+LV  ETC+ VARE+DL + I++     K       ++ AD +E++
Sbjct: 64  DPSAPEGLLAPRYNALVRRETCADVAREVDLGAVIKLGRSEMKSGGRRKEALLADAMEAV 123

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           IAA+Y DGG + A   V   W  R        RDAKT LQEWA A+    P Y  T R+G
Sbjct: 124 IAAIYQDGGFDAARKVVLHLWGARITNVADDARDAKTALQEWAQARGEAPPSYTETARTG 183

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209
           PDH P FT+ V +           SKR
Sbjct: 184 PDHQPAFTIAVTLESGQTETATAGSKR 210


>gi|149200057|ref|ZP_01877082.1| ribonuclease III [Lentisphaera araneosa HTCC2155]
 gi|149136815|gb|EDM25243.1| ribonuclease III [Lentisphaera araneosa HTCC2155]
          Length = 232

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 114/225 (50%), Gaps = 9/225 (4%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLL 59
           ++ +  LE  +   F   +LL +ALTH S     +E     +RLEFLGD ++ L++S  L
Sbjct: 2   SISFKVLEDNLKCKFNQPTLLREALTHRSYKFESKEPLNDNQRLEFLGDAVIELIVSRYL 61

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F+ +  A EG+L+    +LV      + A+ + L  ++ +     K   +   S  +D  
Sbjct: 62  FDRYPDAPEGDLTKYRAALVKESALFECAKSIKLGKYLLLGKSELKSQGNERPSNLSDAY 121

Query: 120 ESLIAALYLDGGIEVAGTF----VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
           E+L+AA+YLD G E A +F    ++K W + A       ++ K  LQE      G  P+Y
Sbjct: 122 EALMAAIYLDQGYETAQSFHINILEKLWDEPADLL--LVQNPKGTLQELTQKNHGSPPKY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
               ++GP+HDP + V   ++    ++G   + +AA++ AA + +
Sbjct: 180 ITISKTGPEHDPLYKVECILNKELISKGQGKTLKAAQENAARKAI 224


>gi|42526537|ref|NP_971635.1| ribonuclease III [Treponema denticola ATCC 35405]
 gi|81412559|sp|Q73NX5|RNC_TREDE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|41816730|gb|AAS11516.1| ribonuclease III [Treponema denticola ATCC 35405]
 gi|325473478|gb|EGC76673.1| ribonuclease 3 [Treponema denticola F0402]
          Length = 246

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 70/221 (31%), Positives = 112/221 (50%), Gaps = 5/221 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFD 64
             +K+ G  F +  LL+ A  H S S+ +     + ERLEFLGD +LGL+ ++ L+  F+
Sbjct: 18  EFQKQAGLKFKDLRLLDLAFHHRSFSNEHNNFHANNERLEFLGDSVLGLVAASYLYKSFE 77

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGEL+    S VS +  S+ A +L++++++ +             +I AD +E++I 
Sbjct: 78  DRPEGELAKIKASAVSEDALSKTASKLNISNYLVLGRGEEMSGGREKKAILADALEAVIG 137

Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A Y+D G + A  FV +  +    ++   KF  D K+ LQE    KF   P+Y++   SG
Sbjct: 138 AYYIDSGFKAAQKFVLRLLESTIHSVLEKKFISDYKSLLQELVQKKFKTVPKYELKKASG 197

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           PDHD  F   V I+G         +K+ AEQ  A    +  
Sbjct: 198 PDHDRTFWFSVSINGKVYGPLSGKTKKEAEQSVAKVAYENL 238


>gi|311104757|ref|YP_003977610.1| ribonuclease III [Achromobacter xylosoxidans A8]
 gi|310759446|gb|ADP14895.1| ribonuclease III [Achromobacter xylosoxidans A8]
          Length = 253

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 69/213 (32%), Positives = 108/213 (50%), Gaps = 6/213 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  +TLE R+ + F++ +LLE+ALTH S         ERLEFLGD +L  +++ +LF  +
Sbjct: 1   MSLATLENRLDHHFSDPALLEQALTHRS---HGARHNERLEFLGDSVLNFVVAAMLFERY 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV   + + +A+ L+L+ ++R+     K       SI AD VE+L 
Sbjct: 58  SKIDEGDLSRLRANLVKQASLADIAQRLELSQYLRLGEGELKSGGFRRPSILADTVEALF 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LD G + A   + + ++     +      +DAKT LQE+   +    P Y V    
Sbjct: 118 GAVFLDAGFDAARRVIVRQYQPVLASVDPKTLGKDAKTLLQEFLQGRKLALPLYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQ 213
           G  H  +F V   I  L         S+RAAEQ
Sbjct: 178 GAAHSQQFEVECAIPALEIKVMAPGASRRAAEQ 210


>gi|94987013|ref|YP_594946.1| ribonuclease III [Lawsonia intracellularis PHE/MN1-00]
 gi|94731262|emb|CAJ54625.1| dsRNA-specific ribonuclease [Lawsonia intracellularis PHE/MN1-00]
          Length = 233

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 110/225 (48%), Gaps = 10/225 (4%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLF 60
           +    L++ +GY F +  LL  ALTHSS  +      E  ERLEFLGD +L + IS  LF
Sbjct: 1   MDLKELQEDLGYYFKDEQLLITALTHSSWVNENDVTAEHNERLEFLGDAVLEICISEELF 60

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                A+EGEL+   ++LV+ +    +AREL L  ++ ++            ++ AD +E
Sbjct: 61  KRHPEAREGELTRMRSNLVNTKMLVLLARELKLNQYLLLARGEENQGGRQRNTLLADTME 120

Query: 121 SLIAALYLDGGIEVAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           ++  A+++DG +  A   +    D +W +   KS    +D KT LQE         P+Y 
Sbjct: 121 AVFGAVFVDGDLFYARKVISKSYDNFWPK---KSAALVKDFKTRLQEETQRHIKGLPKYI 177

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +    GP+H+  F V VE+      +      + AEQ AA   L+
Sbjct: 178 LEGMHGPEHEKIFEVCVELPDGQVFRASGTGLKRAEQEAARIALE 222


>gi|269797766|ref|YP_003311666.1| ribonuclease III [Veillonella parvula DSM 2008]
 gi|282849040|ref|ZP_06258429.1| ribonuclease III [Veillonella parvula ATCC 17745]
 gi|294791672|ref|ZP_06756820.1| ribonuclease III [Veillonella sp. 6_1_27]
 gi|294793530|ref|ZP_06758667.1| ribonuclease III [Veillonella sp. 3_1_44]
 gi|269094395|gb|ACZ24386.1| ribonuclease III [Veillonella parvula DSM 2008]
 gi|282581315|gb|EFB86709.1| ribonuclease III [Veillonella parvula ATCC 17745]
 gi|294455100|gb|EFG23472.1| ribonuclease III [Veillonella sp. 3_1_44]
 gi|294456902|gb|EFG25264.1| ribonuclease III [Veillonella sp. 6_1_27]
          Length = 246

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 111/226 (49%), Gaps = 6/226 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59
                L  R+    ++ S+++ A TH+S ++ ++       +RLEFLGD +L L+I   L
Sbjct: 17  ESLHELVARLDIPVSDISIIDCAFTHTSYANEHKSKHIHHNQRLEFLGDAVLDLIIGEYL 76

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F  +    EG L+    + V  ++ + V+R L L  ++ +    R    +   SI AD  
Sbjct: 77  FKTYPDMAEGNLTKIKAATVCEDSLASVSRSLQLGQYLLLGHGERASGGNDRNSILADTF 136

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKV 177
           ESLI A+Y+    + A  FV K+     +++  GK  +D KT LQE+          Y +
Sbjct: 137 ESLIGAIYISTDYQTAMAFVLKHLTTYIMQALEGKRGKDYKTLLQEYVQRDGDKHIVYHL 196

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              SGPDH   F + VEI+G+    G   SK+ AEQ AA   L++ 
Sbjct: 197 LSESGPDHAKTFHMEVEINGVTYEAGSGKSKKIAEQHAAQLTLEKL 242


>gi|323359692|ref|YP_004226088.1| dsRNA-specific ribonuclease [Microbacterium testaceum StLB037]
 gi|323276063|dbj|BAJ76208.1| dsRNA-specific ribonuclease [Microbacterium testaceum StLB037]
          Length = 230

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 103/226 (45%), Gaps = 7/226 (3%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           + +  S L +++G    +  LL  ALTH S ++        ERLEFLGD +LG  ++  L
Sbjct: 4   NNVERSALTEKLGVDI-DPELLSLALTHRSFAYENGGIPHNERLEFLGDSVLGQAVTVRL 62

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F       EG+L+ R   +VS    ++VAR + L   +R+             SI AD +
Sbjct: 63  FTRHPDLDEGQLAKRRAGVVSTIALAEVARGIGLGQHVRLGRGEILTGGHDKDSILADTM 122

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKV 177
           E++I A YL  G + A   V +  +       ++    D KT LQE A       P Y V
Sbjct: 123 EAIIGATYLSAGPDAATAMVLRLVEPLMADPARYGAAMDPKTSLQEIAARLSVPAPTYSV 182

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              +GPDHD RFT  V +  +    G   SK+ AE  AA    +  
Sbjct: 183 -EAAGPDHDRRFTATVRVGDVV-TTGTGSSKKQAEMAAALTAWREL 226


>gi|170725604|ref|YP_001759630.1| ribonuclease III [Shewanella woodyi ATCC 51908]
 gi|238688672|sp|B1KI57|RNC_SHEWM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|169810951|gb|ACA85535.1| Ribonuclease III [Shewanella woodyi ATCC 51908]
          Length = 225

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 71/213 (33%), Positives = 107/213 (50%), Gaps = 6/213 (2%)

Query: 1   MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           M  ++    L + +GY F+  +LL+ ALTH S +  +    ERLEFLGD IL ++IS  L
Sbjct: 1   MEPIKNIPRLCRTLGYDFSELALLDHALTHRSAASKH---NERLEFLGDSILSIIISDAL 57

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           ++ F  A EG+LS    +LV  +  +++  E  L  ++++     K       SI AD V
Sbjct: 58  YHQFPKATEGDLSRMRATLVCGKMLAEIGFEFKLGDYLKLGPGELKSGGFRRESIIADAV 117

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVT 178
           E++I A+YLD  +EV  + V  ++K R        ++D KT LQE         P YKVT
Sbjct: 118 EAIIGAVYLDSDLEVTRSLVLGWYKTRLETIQPINQKDPKTLLQELLQGYKKPLPVYKVT 177

Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRA 210
              G  H   FT+   +     P  G+  S+R 
Sbjct: 178 DIRGEAHAQTFTIECYVEELRKPVVGVASSRRK 210


>gi|294784571|ref|ZP_06749860.1| ribonuclease III [Fusobacterium sp. 3_1_27]
 gi|294487787|gb|EFG35146.1| ribonuclease III [Fusobacterium sp. 3_1_27]
          Length = 234

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 62/227 (27%), Positives = 118/227 (51%), Gaps = 7/227 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60
               LE ++ Y F +R+LL+ AL H S+ +  +E    + ERLE LGD +L L+++  L+
Sbjct: 3   NLLDLEHKLNYYFNDRNLLKNALLHKSLGNERKEYKNQNNERLELLGDAVLDLIVAEYLY 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            ++ +A EG ++     +VS    ++++R++ +  F+ +S            SI AD  E
Sbjct: 63  KNYKNASEGTIAKLKAMIVSEPILAKISRQIGVGKFLMLSRGEVMSGGRNRESILADSFE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +++ A+Y+D  ++ A  F   + KQ    ++  +   D K+ LQE+   +F   P Y++ 
Sbjct: 123 AILGAVYMDSNLDDARNFTLSHIKQYIDHIEENEDILDFKSILQEYVQKEFRTVPTYELI 182

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
              GPDH   F + V +      + +  +K+ AEQ++A  +  + G+
Sbjct: 183 AERGPDHMKEFEIQVIVGNYKE-KAVARNKKKAEQLSAKALCIKLGV 228


>gi|229168588|ref|ZP_04296311.1| Ribonuclease 3 [Bacillus cereus AH621]
 gi|228614994|gb|EEK72096.1| Ribonuclease 3 [Bacillus cereus AH621]
          Length = 245

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 60/209 (28%), Positives = 98/209 (46%), Gaps = 5/209 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFN 61
           +   ++ IG  F +  LL +A THSS  + ++    E  ERLEFLGD +L L +S  LF 
Sbjct: 19  FKVFQEEIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +  EGEL+    ++V   +  + A E+   S + +             ++ ADV E+
Sbjct: 79  KYPTMSEGELTKLRAAIVCEPSLVRFANEMSFGSLVLLGKGEEMTGGRERPALLADVFEA 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            I ALYLD G+E+   ++ +    +  +       D K++LQE          EY++   
Sbjct: 139 FIGALYLDQGLEIVWGYLKEVVYPKINEGAFSHVMDYKSQLQELIQRDGSGNVEYQILQE 198

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            GP H+  F   V ++  A   G   SK+
Sbjct: 199 KGPAHNREFVSRVTLNNEALGLGSGKSKK 227


>gi|297626608|ref|YP_003688371.1| ribonuclease III [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922373|emb|CBL56945.1| Ribonuclease III [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 240

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 112/223 (50%), Gaps = 7/223 (3%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLF 60
           + R++ L K +G    +  LL  ALTH S ++ +      ERLEFLGD +LG+ ++  L+
Sbjct: 8   SSRFAELIKELGV-PLDAELLGLALTHRSYAYEHGQIPHNERLEFLGDSVLGINVTDYLY 66

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            HF    EG L+    ++VS+ + ++VAR L +   +++            TSI AD  E
Sbjct: 67  RHFPDYAEGRLAKLRAAVVSSVSLAEVARSLGIGQLVKLGHGELTTGGRDKTSILADTTE 126

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI A+Y+      A  FV   +     ++ K     D KT LQE A A     PEY+  
Sbjct: 127 ALIGAIYM-TDPSGAAKFVHHIFDPLVDRAVKMGAGLDWKTSLQEIAAAMESDPPEYR-I 184

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             +GPDHD RFT V  + G     GM  +K+ AEQ AA    +
Sbjct: 185 SETGPDHDKRFTAVALVDGRTFDPGMGHNKKQAEQHAAENAFR 227


>gi|170781177|ref|YP_001709509.1| ribonuclease III [Clavibacter michiganensis subsp. sepedonicus]
 gi|169155745|emb|CAQ00866.1| ribonuclease III [Clavibacter michiganensis subsp. sepedonicus]
          Length = 238

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 76/208 (36%), Positives = 99/208 (47%), Gaps = 5/208 (2%)

Query: 20  RSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
             LLE ALTH S ++ +      ERLEFLGD ILG  ++ +L+       EGEL+ R  S
Sbjct: 26  PELLELALTHRSYAYEHGGIPHNERLEFLGDSILGQAVTVMLYLENPDLDEGELAKRRAS 85

Query: 78  LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137
           LVS+   ++VA  + L   + +            +SI AD VE++I A YLD G E A  
Sbjct: 86  LVSSVALAEVATRIGLGEHLLLGRGEELTGGRAKSSILADTVEAIIGASYLDAGGEAATG 145

Query: 138 FVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
            V +          +F    D KT LQE A  +    P Y V+  SGPDH  RF  VV +
Sbjct: 146 LVLRLIAPLLEDPARFGAAMDPKTALQESAARQGLPAPAYDVSD-SGPDHSKRFHAVVTV 204

Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                  G   SK+ AE  AA E   R 
Sbjct: 205 GDAVRTTGEGSSKKQAEMTAALEAWTRL 232


>gi|296113914|ref|YP_003627852.1| ribonuclease III [Moraxella catarrhalis RH4]
 gi|295921608|gb|ADG61959.1| ribonuclease III [Moraxella catarrhalis RH4]
          Length = 266

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 112/224 (50%), Gaps = 10/224 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L  ++GY F + SLL +ALTH S     ++SYERLEFLGD +L  +I+  LF  +    E
Sbjct: 39  LYAKLGYTFKDVSLLCRALTHRSY--DPKKSYERLEFLGDALLSSIITKALFAQYPKHDE 96

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+L+    +LV  ET  Q+A  L+L+  + +    RK       SI AD VE+LIAA+YL
Sbjct: 97  GKLTRMRAALVRQETLVQIADHLELSRHLILGVGERKGGGRHRASILADAVEALIAAVYL 156

Query: 129 DG----GIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           D     G  +    V  ++K    + G+ +  +DAK+ LQE         P Y++    G
Sbjct: 157 DNLNSDGENIIHRMVMDWYKDLIQEVGQEQVLKDAKSRLQELLQGNRLPLPTYELIQTLG 216

Query: 183 PDHDPRFTVVVE--ISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              +  F V     + G+ P      S+R AEQ  A  ++ +  
Sbjct: 217 SAPNQVFVVRCHCTVVGVDPIIETGASRRIAEQKCAERMINQLN 260


>gi|326560591|gb|EGE10972.1| ribonuclease III [Moraxella catarrhalis 103P14B1]
 gi|326565582|gb|EGE15745.1| ribonuclease III [Moraxella catarrhalis 12P80B1]
 gi|326572025|gb|EGE22027.1| ribonuclease III [Moraxella catarrhalis BC8]
 gi|326573972|gb|EGE23922.1| ribonuclease III [Moraxella catarrhalis O35E]
 gi|326574964|gb|EGE24894.1| ribonuclease III [Moraxella catarrhalis 101P30B1]
          Length = 262

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 112/224 (50%), Gaps = 10/224 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L  ++GY F + SLL +ALTH S     ++SYERLEFLGD +L  +I+  LF  +    E
Sbjct: 35  LYAKLGYTFKDVSLLCRALTHRSY--DPKKSYERLEFLGDALLSSIITKALFAQYPKHDE 92

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+L+    +LV  ET  Q+A  L+L+  + +    RK       SI AD VE+LIAA+YL
Sbjct: 93  GKLTRMRAALVRQETLVQIADHLELSRHLILGVGERKGGGRHRASILADAVEALIAAVYL 152

Query: 129 DG----GIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           D     G  +    V  ++K    + G+ +  +DAK+ LQE         P Y++    G
Sbjct: 153 DNLNSDGENIIHRMVMDWYKDLIQEVGQEQVLKDAKSRLQELLQGNRLPLPTYELIQTLG 212

Query: 183 PDHDPRFTVVVE--ISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              +  F V     + G+ P      S+R AEQ  A  ++ +  
Sbjct: 213 SAPNQVFVVRCHCTVVGVDPIIETGASRRIAEQKCAERMINQLN 256


>gi|260432756|ref|ZP_05786727.1| ribonuclease III [Silicibacter lacuscaerulensis ITI-1157]
 gi|260416584|gb|EEX09843.1| ribonuclease III [Silicibacter lacuscaerulensis ITI-1157]
          Length = 226

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 83/206 (40%), Positives = 119/206 (57%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           +      +KR+G+ FAN  LL +ALTH S+S + +   +RLEFLGDR+LGL++++ L   
Sbjct: 4   SADMKAFQKRLGHQFANPELLVRALTHGSVSSATRPDNQRLEFLGDRVLGLVMASALLEA 63

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
             +A EG+L+ RFN+LV  ETC+ VAR++DL + +++             ++  D +E++
Sbjct: 64  DKTATEGQLAPRFNALVRKETCADVARQIDLGAVLKLGRSEMMSGGRRKQALLGDAMEAV 123

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           IAA+Y D G E A   V K W  R  +     RDAKT LQEWA A+    P Y    R+G
Sbjct: 124 IAAVYRDAGFEAARDVVLKLWGDRLHQVKADARDAKTALQEWAQARGQKPPSYVELSRTG 183

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSK 208
           PDH P FT+V  +     AQ    SK
Sbjct: 184 PDHAPVFTIVARLESGPEAQATAPSK 209


>gi|308388873|gb|ADO31193.1| putative ribonuclease III [Neisseria meningitidis alpha710]
          Length = 267

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 69/219 (31%), Positives = 113/219 (51%), Gaps = 6/219 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++KR+GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F  
Sbjct: 39  HAAIQKRLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDTFPK 95

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 96  LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 155

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +  D     A   V   +  R   +      +D KT LQE   A+    P+Y++  + G 
Sbjct: 156 VSFDADFNTAEKVVRHLFADRVRCADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGH 215

Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221
            +D  F +  ++  L    +    S++AAEQ AA E L+
Sbjct: 216 ANDSMFVISCDLGELGFVCRAKGTSRKAAEQSAAKEALQ 254


>gi|189499162|ref|YP_001958632.1| Ribonuclease III [Chlorobium phaeobacteroides BS1]
 gi|189494603|gb|ACE03151.1| Ribonuclease III [Chlorobium phaeobacteroides BS1]
          Length = 271

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 107/222 (48%), Gaps = 5/222 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHF 63
           + LE  +G++  +  L   ALTH SI H + E   S +RLEFLGD +L L+IS LL+  F
Sbjct: 41  TWLEDILGFSPIDEKLYVIALTHRSIVHDHPEASDSNQRLEFLGDAVLDLIISELLYTVF 100

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             + EG+LS     +V+ ++ +  A ++ L   + +     K      TS  AD  E+LI
Sbjct: 101 PESDEGKLSSNRAKIVNRKSLAGFAGKISLGEHLLIGETADKINIQTSTSSLADAFEALI 160

Query: 124 AALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            ALYLD G+E    F+ ++        K      + K+ L E+  +     P Y V    
Sbjct: 161 GALYLDKGLEETRKFIMRHVAGHVDIKKIDTVENNYKSRLIEYTQSCQIAPPVYTVVSEE 220

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           G +H+  FT+ V        +G    K+ AEQ AA E L+  
Sbjct: 221 GAEHEKLFTIEVSCDNRPLGKGSARRKKDAEQTAAREALEEL 262


>gi|227548991|ref|ZP_03979040.1| ribonuclease III [Corynebacterium lipophiloflavum DSM 44291]
 gi|227078942|gb|EEI16905.1| ribonuclease III [Corynebacterium lipophiloflavum DSM 44291]
          Length = 254

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 69/220 (31%), Positives = 104/220 (47%), Gaps = 6/220 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFN 61
           + ++ L   +G       +L  ALTH S ++ +    + ERLEFLGD +LGL ++  L+ 
Sbjct: 22  VDHAPLLAALGVE-VEPEILRLALTHRSFANEHGPLPNNERLEFLGDAVLGLSVANSLYE 80

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F S  E ++S    S+VS    + VARE+ L + + +             SI AD  E+
Sbjct: 81  RFPSRPESDISKMRASIVSRYGLADVAREIGLGAHVLLGRGEEVTGGRDKDSILADTTEA 140

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179
           L  A+Y   G E A   V + ++ +   +    R  D KT LQE          EY+ T 
Sbjct: 141 LFGAIYRQHGFEPARDVVLRLFESKLESATATGRHQDWKTVLQERLAELKAPAAEYRATS 200

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
             GPDHD  FT  V +   +  +G+  +K+ AEQ AA   
Sbjct: 201 V-GPDHDQTFTADVFVGEDSRGRGVGPNKKLAEQEAARIA 239


>gi|227833427|ref|YP_002835134.1| ribonuclease III [Corynebacterium aurimucosum ATCC 700975]
 gi|262184417|ref|ZP_06043838.1| ribonuclease III [Corynebacterium aurimucosum ATCC 700975]
 gi|227454443|gb|ACP33196.1| ribonuclease III [Corynebacterium aurimucosum ATCC 700975]
          Length = 256

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 110/226 (48%), Gaps = 6/226 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLL 59
           + + ++ L K +G    +  LL  ALTH S ++   +  + ERLEFLGD +LGL I+  L
Sbjct: 18  AEVDHAPLLKALGVEIND-ELLCLALTHRSFANENGHLPNNERLEFLGDAVLGLSIAAKL 76

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  + S  E ++S    S+VS    S VARE+ +   + +    +        SI AD  
Sbjct: 77  YEKYPSRPESDISKMRASIVSRYGLSDVAREIGVGEHVLLGKGEQSTGGRDKDSILADTT 136

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKV 177
           E+++ A+Y   G EVA   V K +  +   +    R  D KT LQE         P Y  
Sbjct: 137 EAILGAIYRQHGFEVARGVVLKLFAAKIDNAVVSGRHMDWKTTLQELCAELKAAMPVYSA 196

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           T  +GP+HD  F  V  ++GL   +G   +K+ AEQ AA E  +  
Sbjct: 197 TS-TGPEHDQTFNAVATVAGLTVGRGTGHNKKLAEQQAAEEACQAL 241


>gi|89895402|ref|YP_518889.1| hypothetical protein DSY2656 [Desulfitobacterium hafniense Y51]
 gi|89334850|dbj|BAE84445.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 262

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 64/209 (30%), Positives = 101/209 (48%), Gaps = 6/209 (2%)

Query: 21  SLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
            L   ALTH S          E+ +RLEFLGD IL  +++  L+  +    EGEL+    
Sbjct: 50  RLFTTALTHPSYLFENPQSGLENNQRLEFLGDAILDFVVAEYLYLSYPERPEGELTKMRA 109

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           ++V+  T ++ A+++ L   + +    +        SI AD  E+++ A+YL  G + A 
Sbjct: 110 AVVNESTLARTAKKIRLGEELLLGKGEQVSGGRERPSILADAWEAIVGAVYLQYGFQEAR 169

Query: 137 TFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
             V    K+   +  +    D KT LQE A  +      Y++    GPDH+ RFT  V +
Sbjct: 170 RVVLTLLKEEIAEVAQGNYGDYKTMLQEKAQ-REETEVTYRILAEEGPDHNKRFTAGVFL 228

Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            G    +G+  +K+ AEQ AA +VL   G
Sbjct: 229 QGNLRGKGIGRTKKEAEQRAAQQVLDEFG 257


>gi|94497606|ref|ZP_01304175.1| ribonuclease III [Sphingomonas sp. SKA58]
 gi|94423023|gb|EAT08055.1| ribonuclease III [Sphingomonas sp. SKA58]
          Length = 227

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 93/215 (43%), Positives = 123/215 (57%), Gaps = 3/215 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L+  IG A  NR+  E+ALTH S       +YERLEFLGDRILGLLI   +F+ F    E
Sbjct: 14  LKDLIGRAPHNRATFEQALTHGSA---KPVNYERLEFLGDRILGLLIGEWVFDRFADEPE 70

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS R+N+LVS ETC+ +AR   +   + +    R D  +   ++  DV+E+LI ALYL
Sbjct: 71  GKLSRRYNALVSGETCADIARTAGVPKHLILGKQARDDGAADSDNVLGDVMEALIGALYL 130

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           +GG++ A   V + W  R        R  K+ LQEWA A     PEY++T RSGP H  R
Sbjct: 131 EGGLDEARALVRRLWGNRVDTQTSAPRHPKSALQEWAAANRRKPPEYQMTDRSGPQHALR 190

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           FTV V I G   A     SK+ AE  AA  +L++ 
Sbjct: 191 FTVAVSIKGAGEASATGASKQEAETAAAKALLEKL 225


>gi|331698524|ref|YP_004334763.1| Ribonuclease 3 [Pseudonocardia dioxanivorans CB1190]
 gi|326953213|gb|AEA26910.1| Ribonuclease 3 [Pseudonocardia dioxanivorans CB1190]
          Length = 238

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 67/225 (29%), Positives = 102/225 (45%), Gaps = 9/225 (4%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61
             +  L + +G    +  LL  ALTH S ++      + ERLEFLGD +L ++++  L+ 
Sbjct: 2   EDHGPLLRALGVEL-DPELLTLALTHRSYAYENGGLPTNERLEFLGDSVLSIVVTERLYL 60

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADV 118
                 EG+L+    S+V+    + VA EL    L + + +             SI AD 
Sbjct: 61  DHPDLPEGQLAKLRASVVNMNALAGVAAELVPDGLGAHLFLGRGEELTGGRAKASILADA 120

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYK 176
            E+LI A+YL  G+E +   + + +      +       D KT LQE   A     PEY+
Sbjct: 121 TEALIGAVYLQHGLETSRDVIHRLFADLLRNAPLLGAGLDWKTSLQELTAAAELGVPEYR 180

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +T   GPDH   FT    + G     G   +K+ AEQ AAA   +
Sbjct: 181 IT-EDGPDHLKTFTATAVVGGRELGSGDGRTKKEAEQKAAALAWR 224


>gi|220904300|ref|YP_002479612.1| ribonuclease III [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
 gi|219868599|gb|ACL48934.1| Ribonuclease III [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
          Length = 243

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 116/225 (51%), Gaps = 6/225 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLFNH 62
              ++K++G+ F  + LLE ALTHSS ++     QE  ER EFLGD +L L +S  L+  
Sbjct: 16  LELVKKQLGHGFIRKDLLELALTHSSWANECGPGQEHNERQEFLGDAVLELCVSWELYRR 75

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F SA+EGEL+   +SLVSA + ++ AR++ L   +++             ++ +D +E++
Sbjct: 76  FPSAREGELTKMRSSLVSAVSLAERARDMGLDRLLKLGRGEESQGGRKRDAVLSDALEAV 135

Query: 123 IAALYLDGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           +AA+Y DGG   A   V + +          GK  +D KT LQE +  +FG  P Y    
Sbjct: 136 LAAIYEDGGFAAAQEAVGRIFADQWPSRAGDGKASKDYKTRLQEASQQRFGQAPLYTRVG 195

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             GP+H   F V + +   +       S + AEQ AA   L+  G
Sbjct: 196 SHGPEHSKVFEVALRLPDGSEFSASGSSCKKAEQQAARIALETLG 240


>gi|313124070|ref|YP_004034329.1| ribonuclease iii [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280633|gb|ADQ61352.1| Ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 231

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 75/231 (32%), Positives = 112/231 (48%), Gaps = 10/231 (4%)

Query: 1   MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55
           M + ++   L+++ G  F +  LLE+A THSS  +        +YE+LEFLGD +L   +
Sbjct: 1   MVSTKFIKMLDEKYGIRFKDVRLLEEAFTHSSYVNENPGKTLGNYEKLEFLGDAVLEFTV 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S  L+ HF    EGEL+   +++V  E  S+VA +      I++     K       ++ 
Sbjct: 61  SDYLYRHFQHLNEGELTRLRSNIVRTEGFSKVALDCGFKKEIKLGVGEEKAGGRKRKALL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTP 173
            DV E+   AL+LD GIE    F+ +      + +G     RD KT+LQE       VT 
Sbjct: 121 EDVFEAFNGALFLDQGIEAVEKFLRQTVYP-LIAAGYFTPSRDFKTDLQELLQQNGSVTI 179

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           EY+V   S     P F V V + G   A G   +K+ AEQ AA+  L+   
Sbjct: 180 EYRVLNESQQP--PHFEVEVLVDGKKLASGEGRNKKKAEQDAASHALEHLN 228


>gi|313892793|ref|ZP_07826374.1| ribonuclease III [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442724|gb|EFR61135.1| ribonuclease III [Veillonella sp. oral taxon 158 str. F0412]
          Length = 246

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 74/227 (32%), Positives = 117/227 (51%), Gaps = 8/227 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59
                L  R+    ++ S+++ A TH+S ++ ++       +RLEFLGD +L L+I   L
Sbjct: 17  ESLHELVARLDIPVSDISIIDCAFTHTSYANEHKSKHINHNQRLEFLGDAVLDLIIGEYL 76

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F ++    EG L+    + V  ++ + V+R L L  ++ +    R    +   SI AD  
Sbjct: 77  FKNYPDMAEGNLTKIKAATVCEDSLASVSRSLQLGQYLLLGHGERASGGNDRNSILADTF 136

Query: 120 ESLIAALYLDGGIEVAGTFVDKY---WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           ESLI A+Y+    + A TFV K+   + ++AL+ GK   D KT LQE+          Y+
Sbjct: 137 ESLIGAIYISTDYQTAMTFVLKHLTIYIKQALE-GKRGNDYKTLLQEYVQRDGDKHIVYR 195

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +   SGPDH   F +VVEI+G+    G   SK+ AEQ AA   L++ 
Sbjct: 196 LLSESGPDHAKTFHIVVEINGVTYEAGSGKSKKIAEQHAAQLTLEKL 242


>gi|254302541|ref|ZP_04969899.1| ribonuclease III [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
 gi|148322733|gb|EDK87983.1| ribonuclease III [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
          Length = 234

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 118/227 (51%), Gaps = 7/227 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60
               LE ++ Y F +R+LL+ AL H S+ +  +E    + ERLE LGD +L L+++  L+
Sbjct: 3   NLLDLEHKLNYYFNDRNLLKNALLHKSLGNERKEYKNQNNERLELLGDAVLDLIVAEYLY 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            ++ +A EG ++     +VS    ++++R++ +  F+ +S            SI AD  E
Sbjct: 63  KNYKNASEGTIAKLKAMIVSEPILAKISRQIGVGKFLMLSRGEVMSGGRNRESILADSFE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +++ A+Y+D  +E A  F   + KQ    ++  +   D K+ LQE+   +F   P Y++ 
Sbjct: 123 AILGAVYIDSNLEEARVFALSHIKQYIDHIEENEDILDFKSILQEYVQKEFRTVPTYELV 182

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
              GPDH   F + V +      + +  +K+ AEQ++A  +  + G+
Sbjct: 183 AERGPDHMKEFEIQVIVGNYKE-KAVARNKKKAEQLSAKALCIKLGV 228


>gi|329894313|ref|ZP_08270183.1| Ribonuclease III [gamma proteobacterium IMCC3088]
 gi|328923109|gb|EGG30432.1| Ribonuclease III [gamma proteobacterium IMCC3088]
          Length = 221

 Score =  231 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 114/223 (51%), Gaps = 6/223 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++ S L++ IGY F + SL+E AL H S+     ++ ERLEFLGD ++  +++  LF  +
Sbjct: 1   MQLSALQQAIGYQFKDLSLIELALAHRSVG---AKNNERLEFLGDSLVNHVVAEALFKRY 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A EGE+S R   LV  ET + +ARE +L  F+ +    RK       SI AD +E++ 
Sbjct: 58  PKAPEGEMSRRRAYLVKGETLAAIAREKNLGDFVELGQGERKSGGHRRKSILADALEAVA 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+ LD   E A   V  +++ R      F   +DAKT LQEW   +    PEY +    
Sbjct: 118 AAILLDSDFETAKQVVFAWFRDRLNDETSFAASKDAKTSLQEWLQGRGLALPEYHLVATR 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223
           G DH   F V   +            S+R AEQ +A ++L R 
Sbjct: 178 GEDHQKVFVVECRVPSKGLKETASASSRRRAEQTSAQQILDRL 220


>gi|328948083|ref|YP_004365420.1| ribonuclease 3 [Treponema succinifaciens DSM 2489]
 gi|328448407|gb|AEB14123.1| Ribonuclease 3 [Treponema succinifaciens DSM 2489]
          Length = 248

 Score =  231 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 109/228 (47%), Gaps = 7/228 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60
                 + +   F N SLL+ A  H S S+        + ERLEFLGD +LGL  +  L+
Sbjct: 20  ELDEFCRHLKLHFKNYSLLDLAFHHRSYSNENTSYKRYNNERLEFLGDSVLGLATAAFLY 79

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           N     KEG+L+    ++VS ++ + +A E + +  ++ +             +I AD V
Sbjct: 80  NDMSQNKEGDLAKIKANVVSEQSLAPIAVEKMHIDKYLVLGKGEELSGGRTKKAILADAV 139

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E++I ALY+D G E A   V +        ++S    +D KT LQE+   K    P Y +
Sbjct: 140 EAVIGALYIDSGYESAERLVLELIIPEIRKVQSDHGSKDYKTLLQEFYQKKTNACPSYSL 199

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
              +GPDHD  F V V++  +        +K++AEQ AA    K  GI
Sbjct: 200 VRTTGPDHDRIFYVSVKLGDVVYGPASGKNKKSAEQAAAGVACKALGI 247


>gi|319892231|ref|YP_004149106.1| Ribonuclease III [Staphylococcus pseudintermedius HKU10-03]
 gi|317161927|gb|ADV05470.1| Ribonuclease III [Staphylococcus pseudintermedius HKU10-03]
 gi|323464672|gb|ADX76825.1| ribonuclease III [Staphylococcus pseudintermedius ED99]
          Length = 243

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 66/221 (29%), Positives = 106/221 (47%), Gaps = 5/221 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59
             ++   K +   + N SL ++A +HSS  + +     E  ERLEFLGD +L L +S  L
Sbjct: 15  ENFAKKMKALNLTYDNMSLYQQAFSHSSFINDFNMDRTEHNERLEFLGDAVLELTVSRYL 74

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F+ F    EGEL+    ++V   +    A+ ++L   I +     K       S+ ADV 
Sbjct: 75  FDAFPKLPEGELTKMRANIVCEPSLVVFAQHINLMPLILLGKGEEKTGGRTRPSLVADVF 134

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVT 178
           E+ + ALYLD G+E    F +                D KT+ QE+ H  +    +Y+V 
Sbjct: 135 EAFVGALYLDQGLEAVWQFAEAVIFPHVKGRQLIGVVDFKTKFQEYVHQNYLGVIKYRVA 194

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
              GP H+  FT  + ++G A ++G   +K+ +EQ AA + 
Sbjct: 195 KEEGPAHNKTFTSEILLNGEAVSRGEGRTKKESEQKAAEQA 235


>gi|238019508|ref|ZP_04599934.1| hypothetical protein VEIDISOL_01377 [Veillonella dispar ATCC 17748]
 gi|237864207|gb|EEP65497.1| hypothetical protein VEIDISOL_01377 [Veillonella dispar ATCC 17748]
          Length = 245

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 74/227 (32%), Positives = 117/227 (51%), Gaps = 8/227 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59
                L  R+    ++ S+L+ A TH+S ++ ++       +RLEFLGD +L L+I   L
Sbjct: 17  ESLHGLVARLDIPVSDISILDCAFTHTSYANEHKSKHINHNQRLEFLGDAVLDLIIGEYL 76

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F  +    EG+L+    + V  ++ + V+R L L  ++ +    R    +   SI AD  
Sbjct: 77  FKTYPDMAEGDLTKIKAATVCEDSLASVSRSLQLGQYLLLGHGERASGGNNRNSILADTF 136

Query: 120 ESLIAALYLDGGIEVAGTFVDKY---WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           ESLI A+Y+    + A  FV K+   + ++AL+ GK  +D KT LQE+          Y+
Sbjct: 137 ESLIGAIYISTDYQTAMNFVLKHLITYIKQALE-GKRGKDYKTLLQEYVQRDGDKHTVYR 195

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +   SGPDH   F +VVEI+G+    G   SK+ AEQ AA   L++ 
Sbjct: 196 LLSESGPDHAKTFHMVVEINGVTYEAGSGKSKKIAEQHAAQLTLEKL 242


>gi|320104374|ref|YP_004179965.1| RNAse III [Isosphaera pallida ATCC 43644]
 gi|319751656|gb|ADV63416.1| RNAse III [Isosphaera pallida ATCC 43644]
          Length = 238

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 76/221 (34%), Positives = 121/221 (54%), Gaps = 3/221 (1%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
            +   ++ E+ IG++F +R LL  ALTHSS +     S ERLEFLGD +LG+++   LF+
Sbjct: 6   DSELLASCERVIGHSFQDRGLLRAALTHSSRAVHPLASNERLEFLGDSVLGMIVCDTLFH 65

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F  AKEG+L+   + +VS +TC+++AR+L L +++ +   +     +   S  A+V ES
Sbjct: 66  LFPEAKEGDLTRIKSVVVSRQTCTKIARKLGLQNYLLLGKGMGPSSQA-PASTLANVFES 124

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           ++ A+YLD G E A  FV           K+ + + + K++LQ++A    G TP Y +  
Sbjct: 125 VVGAIYLDSGFEAARRFVLNNLLPEIESSKNEESQGNYKSQLQQYAQKNHGTTPTYHLLE 184

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             GPDH   F ++  I           +K+ AEQ AA   L
Sbjct: 185 EKGPDHRKCFKILARIGSHQFPPAWGQTKKDAEQRAAQNAL 225


>gi|315924201|ref|ZP_07920427.1| ribonuclease III [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315622603|gb|EFV02558.1| ribonuclease III [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 229

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 74/222 (33%), Positives = 115/222 (51%), Gaps = 7/222 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M AL+   L++ IGY F N++ L +ALTHSS  +S +++ ERLE+LGD +L L IS  LF
Sbjct: 1   MEALK---LQQSIGYIFKNQAYLHEALTHSSHGNS-EKNNERLEYLGDAVLELSISDYLF 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            HF    EG+++    S+V +E+ SQ AR L L +++ +             SI  +  E
Sbjct: 57  KHF-DFDEGKMTKLRASIVCSESLSQAARRLHLGNYLHLGKGEVISGGRSRQSILENAFE 115

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +++ A++LD     +     +          +G+   D KT LQE    +     EY + 
Sbjct: 116 AMLGAIFLDSDYSTSQKKAIELLSDNIEMAIAGRLTNDYKTALQELIQKQSDHVIEYVLD 175

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
              GP+HD  F V + I+G   + G   +K+ AEQ AA + L
Sbjct: 176 KADGPEHDKTFFVTLMINGQMSSNGRGKTKKEAEQQAAKKSL 217


>gi|296393287|ref|YP_003658171.1| ribonuclease III [Segniliparus rotundus DSM 44985]
 gi|296180434|gb|ADG97340.1| ribonuclease III [Segniliparus rotundus DSM 44985]
          Length = 338

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 69/220 (31%), Positives = 111/220 (50%), Gaps = 9/220 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64
             L + +G    + SL+  ALTH S ++ + E  + ERLEFLGD +LGL+++  L+    
Sbjct: 105 EELFESLGVTLQD-SLMTLALTHRSWANEHGEVPTNERLEFLGDTVLGLVVTEQLYVTHP 163

Query: 65  SAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVES 121
             +EGEL+    ++VS  + +++AR L    L  ++ + +   +       SI AD +E+
Sbjct: 164 DKEEGELAKLRANIVSTASLAEIARRLGKGGLGEYLYLGNGEVRTGGKNKDSILADGLEA 223

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTF 179
           +I A+++  GIE A   V         ++ +     D KT LQE    +    P Y+VT 
Sbjct: 224 VIGAVHIQYGIEKAREVVLALCAPLLARAARLGAGLDWKTSLQELCARRGLRPPVYEVT- 282

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            +GPDH+  FT VV I   +   G   +K+ AE  AA   
Sbjct: 283 EAGPDHEKLFTAVVLIEEKSLGTGSGRTKKEAEMKAAGHA 322


>gi|296185386|ref|ZP_06853796.1| ribonuclease III [Clostridium carboxidivorans P7]
 gi|296050220|gb|EFG89644.1| ribonuclease III [Clostridium carboxidivorans P7]
          Length = 240

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 77/220 (35%), Positives = 116/220 (52%), Gaps = 4/220 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
           +  LE+++   F ++ LL+ ALTHSS ++  +  +  ERLEFLGD +L + IS  LF ++
Sbjct: 14  FVELEQKLDVCFEDKELLKIALTHSSYANGKKNIKFNERLEFLGDSVLQISISEYLFLNY 73

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EGEL+ R   +V   +  ++A++ DL  +IR+S            SI AD VE++I
Sbjct: 74  SKKTEGELTKRRALIVCENSLYEIAKKWDLGKYIRMSKGEELTGGRERVSILADCVEAII 133

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           AA+Y+D G E A  FV   +K    K+   K   D KT+LQE       V  +Y +    
Sbjct: 134 AAIYIDAGFEKAKGFVLTNFKDTIEKAIKNKIILDYKTKLQEVMQKNGDVDIQYDLMKYE 193

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           GP H  +F   V ++      G   SK+ +EQ AA + LK
Sbjct: 194 GPPHRRKFYTQVSVNNKVLGNGTGYSKKESEQSAAKKALK 233


>gi|259501533|ref|ZP_05744435.1| ribonuclease III [Lactobacillus iners DSM 13335]
 gi|302191494|ref|ZP_07267748.1| ribonuclease III [Lactobacillus iners AB-1]
 gi|309804216|ref|ZP_07698293.1| ribonuclease III [Lactobacillus iners LactinV 11V1-d]
 gi|309806878|ref|ZP_07700865.1| ribonuclease III [Lactobacillus iners LactinV 03V1-b]
 gi|309808658|ref|ZP_07702550.1| ribonuclease III [Lactobacillus iners LactinV 01V1-a]
 gi|325913482|ref|ZP_08175848.1| ribonuclease III [Lactobacillus iners UPII 60-B]
 gi|259167051|gb|EEW51546.1| ribonuclease III [Lactobacillus iners DSM 13335]
 gi|308163619|gb|EFO65889.1| ribonuclease III [Lactobacillus iners LactinV 11V1-d]
 gi|308166744|gb|EFO68936.1| ribonuclease III [Lactobacillus iners LactinV 03V1-b]
 gi|308168132|gb|EFO70258.1| ribonuclease III [Lactobacillus iners LactinV 01V1-a]
 gi|325477251|gb|EGC80397.1| ribonuclease III [Lactobacillus iners UPII 60-B]
          Length = 225

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 80/226 (35%), Positives = 120/226 (53%), Gaps = 6/226 (2%)

Query: 1   MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLIST 57
           M +  + + L+++    F N  LLE+ALTHSS S+ +Q  ++YE+LEFLGD +L L IS 
Sbjct: 1   MVSESFKNELQEKYQIKFNNEQLLEQALTHSSYSNEHQGCKNYEKLEFLGDAVLELAISD 60

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            L+ HF +  EGEL+   +++V  E  SQ A E   +  +++     K       ++  D
Sbjct: 61  YLYRHFPNMNEGELTRMRSNIVRTEGFSQFATECGFSREVKLGKGEEKSGSRTRHTLLED 120

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYK 176
           V E+   AL+LD G+     F+         +      RD KTELQE       +  +YK
Sbjct: 121 VFEAFNGALFLDQGMPAVQHFLHLTVYPLIAEGDFDSSRDYKTELQEKLQVNGAIDIQYK 180

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           V      +  PRFTV + ++G   +QG+  SK+AAEQVAA+  LK 
Sbjct: 181 VIDSD--EAQPRFTVQLIVAGENISQGIGRSKKAAEQVAASVALKN 224


>gi|73662845|ref|YP_301626.1| ribonuclease III [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
 gi|90101648|sp|Q49X17|RNC_STAS1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|72495360|dbj|BAE18681.1| dsRNA-specific ribonuclease RNase III [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 244

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 63/229 (27%), Positives = 100/229 (43%), Gaps = 8/229 (3%)

Query: 1   MSALRYSTLEKR---IGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGL 53
           M     +  EK+   +   F    L ++A +HSS  + +     +  ERLEFLGD +L L
Sbjct: 9   MVQTFQNKFEKKMQELNLDFNRVDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLEL 68

Query: 54  LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
            +S  LF+ +    EG L+    ++V   +    A ++ L   I +     K       S
Sbjct: 69  TVSRYLFDKYPELPEGNLTKMRATIVCEPSLVIFANKIQLNDLILLGKGEEKTGGRTRPS 128

Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVT 172
           + +D  E+ + ALYLD G+E    F ++               D KT+ QE+ H +    
Sbjct: 129 LVSDAFEAFVGALYLDQGLEAVWQFSEQIIFPYVEDDELDGVVDFKTQFQEYVHRQNKGD 188

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             Y++    GP H   FT  V +   A A+G   +K+ +EQ AA    K
Sbjct: 189 VTYRLINEEGPAHHRLFTSEVILEEDAVAEGKGKTKKESEQKAAERAYK 237


>gi|78356751|ref|YP_388200.1| ribonuclease III [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
 gi|90101625|sp|Q310Z1|RNC_DESDG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|78219156|gb|ABB38505.1| RNAse III [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 229

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 73/221 (33%), Positives = 113/221 (51%), Gaps = 5/221 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNH 62
           +  L+  + Y FA+  LLE ALTHSS ++      E  ERLE+LGD +L L +S  LF  
Sbjct: 2   FEKLQDVLCYRFADVRLLETALTHSSYANERGTEIEHNERLEYLGDAVLELTVSEQLFTR 61

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F  A+EG+L+     LVS  + +++AREL L +++ +            +S+ +D  E++
Sbjct: 62  FPEAREGQLTRMRARLVSKPSLAELARELKLDTYLLLGKGEESQGGRTRSSVLSDAFEAI 121

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           + A++LDGG   AG  V   +  R  +       +DAK+ LQE     F   P Y +   
Sbjct: 122 LGAIFLDGGYAAAGKTVLHVFSSRWPQGAEAARTKDAKSTLQELTQRLFKERPVYTLLGS 181

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           SGP+H+  F V + +      +    S + AEQ AA   L+
Sbjct: 182 SGPEHEKIFKVRLLLPDGRALETEGQSVKRAEQKAAGLALE 222


>gi|269794452|ref|YP_003313907.1| RNAse III [Sanguibacter keddieii DSM 10542]
 gi|269096637|gb|ACZ21073.1| RNAse III [Sanguibacter keddieii DSM 10542]
          Length = 234

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 75/217 (34%), Positives = 103/217 (47%), Gaps = 6/217 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
           + L + +G    +  LL  +LTH S +H      + ERLEFLGD +LGL+ +  LF    
Sbjct: 13  THLLEELGVHL-DPELLVLSLTHRSFAHEAGGIPTNERLEFLGDAVLGLVAAEALFRRHP 71

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+L+    + VS    + VAR L L  +I +     +       SI +D VESLI 
Sbjct: 72  DRPEGDLAKMRAASVSQRALAAVARRLSLGDYILLGKGESQTRGFDKDSILSDTVESLIG 131

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YL  G+E A +FV +        +       D KT LQE A  +    PEY      G
Sbjct: 132 AVYLSHGLEEARSFVHRLLDSTLDAAADLGAGLDWKTSLQEAAAERNVGAPEYTSEGE-G 190

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           PDH   FT  V I G     G   +K+ AEQ+AA + 
Sbjct: 191 PDHARIFTAHVIIDGEILGTGQGTAKKHAEQIAAEQA 227


>gi|227872403|ref|ZP_03990750.1| ribonuclease III [Oribacterium sinus F0268]
 gi|227841763|gb|EEJ52046.1| ribonuclease III [Oribacterium sinus F0268]
          Length = 241

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 78/227 (34%), Positives = 122/227 (53%), Gaps = 6/227 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTLLF 60
             S LE+ +GY F ++ LL  ALTH S S+      + S +RLEFLGD +L L+ STLL+
Sbjct: 10  SLSKLEEDLGYHFQDQKLLLHALTHPSYSNEMGHPKEASNQRLEFLGDAVLELVSSTLLY 69

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           +     +EG ++    +LV     + VA+ L L+S++ +     ++   F  S+ +D +E
Sbjct: 70  HKKPVIQEGRMTKLRAALVCESALAVVAKSLQLSSYLLLGKGEEREGIQFRDSVLSDALE 129

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           ++I A+YLDGG++ A  FV        ++     +DAKT LQE+  AK     EY +   
Sbjct: 130 AVIGAIYLDGGMKKAECFVRGKVLS-DIEHKTLFQDAKTMLQEYCTAKRYPL-EYDLLEE 187

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           SGP H   + V V+++      G   SK+ AEQ AA   L++  + T
Sbjct: 188 SGPFHQRFYKVSVKVNEEVYGIGEGSSKKKAEQAAAYFALEKIKVET 234


>gi|108762302|ref|YP_631944.1| ribonuclease III [Myxococcus xanthus DK 1622]
 gi|123074286|sp|Q1D5X9|RNC_MYXXD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|108466182|gb|ABF91367.1| ribonuclease III [Myxococcus xanthus DK 1622]
          Length = 260

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 115/228 (50%), Gaps = 6/228 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIST 57
            + R   LE R+G +F+      +ALTH +  +  +    +  +RLEFLGD ++ L +S 
Sbjct: 12  PSERVQLLESRLGLSFSRMETALEALTHKTYVNETRDKELKDNQRLEFLGDSVVNLAVSH 71

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            L        EG+L+     +V+ +  ++VAR + L   + +             S+ AD
Sbjct: 72  RLMARCPGLPEGDLTKMRARVVNEDGLARVARTIPLGDLLLLGRGELMSGGREKNSVLAD 131

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
            +E++  A++L  G++ A T VD+Y+      + SG+ R D KT LQE AH +  + P Y
Sbjct: 132 ALEAVFGAVFLTSGLDAAVTLVDRYFADLLDEVSSGQGRLDYKTLLQEMAHERLKLQPRY 191

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +V   SGP+H   F V + +   A A+    SK+ AEQ AA   L++ 
Sbjct: 192 RVVSESGPEHSKVFEVELMLGETAFARATGRSKKEAEQSAAQATLEKL 239


>gi|259417917|ref|ZP_05741836.1| ribonuclease III [Silicibacter sp. TrichCH4B]
 gi|259346823|gb|EEW58637.1| ribonuclease III [Silicibacter sp. TrichCH4B]
          Length = 228

 Score =  231 bits (589), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 75/202 (37%), Positives = 115/202 (56%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             + R+G+ F++  LL +ALTH S+S   ++  +RLEFLGDR+LGL+++T L  H   A 
Sbjct: 9   AFQARLGHEFSSPELLIRALTHPSVSSPNRQDNQRLEFLGDRVLGLVMATALLEHDKHAT 68

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG+L+ RFN+LV  E C+ VAR++DL + +++             ++  D +E++IAA+Y
Sbjct: 69  EGQLAPRFNALVRKEACADVARQIDLGAVLKLGRSEMLSGGRRKQALLGDAMEAVIAAVY 128

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
            D G E A   + + W +R        RD KT LQE+  A+    P Y +  R+GPDH+P
Sbjct: 129 KDAGFEAAQNVILRLWGKRVGTVEDDARDPKTALQEFVQARRQPPPAYVLIARTGPDHEP 188

Query: 188 RFTVVVEISGLAPAQGMDCSKR 209
            FT+   +      Q    SKR
Sbjct: 189 VFTIAARLEDGTEEQATAGSKR 210


>gi|194335354|ref|YP_002017148.1| Ribonuclease III [Pelodictyon phaeoclathratiforme BU-1]
 gi|194307831|gb|ACF42531.1| Ribonuclease III [Pelodictyon phaeoclathratiforme BU-1]
          Length = 273

 Score =  231 bits (589), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 78/229 (34%), Positives = 114/229 (49%), Gaps = 7/229 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-----ESYERLEFLGDRILGLLI 55
           +SA   + L++ +G   +N  L + ALTH S+ H        ES +RLEFLGD +LG+LI
Sbjct: 39  LSAETVAYLQQLVGEPVSNLPLYQTALTHRSVVHDPATTSLIESNQRLEFLGDSVLGMLI 98

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S  LF  F ++ EGELS     +V++++ +  AR L L   + +             S  
Sbjct: 99  SEYLFRKFPTSAEGELSSNRAKIVNSKSLAGFARSLCLGDHLILGESADHHKIRSSESAL 158

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTP 173
           AD  ESLI A+YLD GI+ A  FV +   +            + K+ L E+  +     P
Sbjct: 159 ADAFESLIGAIYLDKGIKTAFDFVIRSIIEHVNFNTIVAAEHNYKSRLIEYTQSNHLPPP 218

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            Y V   +G +H+  FTV V  SG     G    K+ AEQ+AA E ++R
Sbjct: 219 LYTVITETGAEHEKSFTVGVSCSGELLGTGTAQRKKDAEQLAAKEAMER 267


>gi|269957060|ref|YP_003326849.1| ribonuclease III [Xylanimonas cellulosilytica DSM 15894]
 gi|269305741|gb|ACZ31291.1| ribonuclease III [Xylanimonas cellulosilytica DSM 15894]
          Length = 239

 Score =  231 bits (589), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 70/221 (31%), Positives = 104/221 (47%), Gaps = 7/221 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
           + L +++G    +  LL  ALTH S +H        ERLEFLGD +LG++++  LF    
Sbjct: 13  TALLEKLGV-PLDPELLVLALTHRSFAHEAGGIPHNERLEFLGDSVLGVVVTEALFRRHP 71

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGEL+    + VS  + + VAR L+L S++ +    R+       SI +D VE+LI 
Sbjct: 72  DVSEGELAKMRAATVSQRSLAAVARRLELGSYVLLGKGERRTRGFDKDSILSDTVEALIG 131

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A Y+  G+E A   V +        +       D KT LQE    +    P Y+V    G
Sbjct: 132 ATYISHGLEAARELVHRLVDDTLDAAADLGAGLDWKTSLQEACAERGYPAPTYEVDAE-G 190

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           P+H   F   V  +G     G   +K+ AEQ AA +  +  
Sbjct: 191 PEHARAFHAQVT-AGPVLGLGHGTAKKHAEQEAAEQAYRAL 230


>gi|309809559|ref|ZP_07703417.1| ribonuclease III [Lactobacillus iners SPIN 2503V10-D]
 gi|329921162|ref|ZP_08277684.1| ribonuclease III [Lactobacillus iners SPIN 1401G]
 gi|308170231|gb|EFO72266.1| ribonuclease III [Lactobacillus iners SPIN 2503V10-D]
 gi|328934800|gb|EGG31291.1| ribonuclease III [Lactobacillus iners SPIN 1401G]
          Length = 225

 Score =  231 bits (589), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 80/226 (35%), Positives = 120/226 (53%), Gaps = 6/226 (2%)

Query: 1   MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLIST 57
           M +  + + L+++    F N  LLE+ALTHSS S+ +Q  ++YE+LEFLGD +L L IS 
Sbjct: 1   MVSESFKNELQEKYQIKFNNEQLLEQALTHSSYSNEHQGCKNYEKLEFLGDAVLELAISD 60

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            L+ HF +  EGEL+   +++V  E  SQ A E   +  +++     K       ++  D
Sbjct: 61  YLYRHFPNMNEGELTRMRSNIVRTEGFSQFATECGFSREVKLGKGEEKSGSRTRHTLLED 120

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYK 176
           V E+   AL+LD G+     F+         +      RD KTELQE       +  +YK
Sbjct: 121 VFEAFNGALFLDQGMPAVQHFLHLTVYPLIAEGDFDSSRDYKTELQEKLQVNGAIDIQYK 180

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           V      +  PRFTV + ++G   +QG+  SK+AAEQVAA+  LK 
Sbjct: 181 VIDSD--EAKPRFTVQLIVAGENISQGIGRSKKAAEQVAASVALKN 224


>gi|237785779|ref|YP_002906484.1| ribonuclease III [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758691|gb|ACR17941.1| ribonuclease III [Corynebacterium kroppenstedtii DSM 44385]
          Length = 246

 Score =  231 bits (589), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 66/201 (32%), Positives = 96/201 (47%), Gaps = 5/201 (2%)

Query: 23  LEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
           L  ALTH S ++      + ERLEFLGD +LGL ++  L+  +    E E+S     +V+
Sbjct: 43  LRLALTHRSFANENGMLPNNERLEFLGDAVLGLSVAERLYRDYPDRTESEISKMRAGVVN 102

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140
               + VARE+ L   + +    +        SI AD  E+++ A+YL+ G + A   + 
Sbjct: 103 MYALADVAREIGLGDHVLLGRGEQLTNGKDKNSILADTTEAMLGAIYLEHGFQTAKDVIL 162

Query: 141 KYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
           + +K R   +       D KTEL E    +    PEY  T  SGP HDP FT  V + G 
Sbjct: 163 RLFKSRIESAPTVGLHMDWKTELLEKIAGRGLGEPEYNTT-ISGPAHDPHFTSTVSLQGK 221

Query: 199 APAQGMDCSKRAAEQVAAAEV 219
               G   +K+ AE  AA E 
Sbjct: 222 VWGHGEGHTKKEAEHHAAREA 242


>gi|317506412|ref|ZP_07964217.1| ribonuclease III [Segniliparus rugosus ATCC BAA-974]
 gi|316255292|gb|EFV14557.1| ribonuclease III [Segniliparus rugosus ATCC BAA-974]
          Length = 347

 Score =  231 bits (589), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 71/220 (32%), Positives = 109/220 (49%), Gaps = 9/220 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64
           + L   IG      SLL  ALTH S ++ + E  + ERLEFLGD +LGL+I+  L+    
Sbjct: 114 AELFDSIGVTLQ-ESLLTLALTHRSWANEHGEVPTNERLEFLGDTVLGLVITEQLYVTHP 172

Query: 65  SAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVES 121
             +EGEL+    ++VS  + +++AR L    L  ++ + +   +       SI AD +E+
Sbjct: 173 DKEEGELAKLRANIVSTISLAEIARRLGKGGLGEYLYLGNGEMRTGGKNKDSILADGLEA 232

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTF 179
           L+ A+++  GIE A   V         ++ +     D KT LQE    +    P Y+V  
Sbjct: 233 LLGAVHIQYGIEKAREVVLHLCAPLLARAARLGAGLDWKTSLQELCARRGLRPPVYEV-A 291

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            +GPDH+  FT VV I   +   G   +K+ AE  AA   
Sbjct: 292 EAGPDHEKLFTAVVLIEEKSLGTGSGRTKKEAEMKAAGHA 331


>gi|157803302|ref|YP_001491851.1| ribonuclease III [Rickettsia canadensis str. McKiel]
 gi|189043341|sp|A8EXI3|RNC_RICCK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|157784565|gb|ABV73066.1| ribonuclease III [Rickettsia canadensis str. McKiel]
          Length = 227

 Score =  230 bits (588), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 79/227 (34%), Positives = 118/227 (51%), Gaps = 7/227 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
           MS+  ++ LEK +GY+F N+ LL +AL+H S+   ++    + YERLEFLGD +L L+I+
Sbjct: 1   MSS--FNELEKLLGYSFKNKELLIEALSHPSLRQHHEYKDNKDYERLEFLGDAVLNLVIT 58

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
            +LF++F S  EG L+   + LV  ET   V  +L L  +I ++            +   
Sbjct: 59  KILFSNFASYNEGNLAKIRSYLVCKETICMVGAKLALKDYIIMTYGEEVAGGRDNPNNIE 118

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           +  E+LIAA+YLD  IE     + + W +          D KT LQEWA A     P Y 
Sbjct: 119 NATEALIAAIYLDSNIETTHNIIGQLWAEFIKVQNLTDYDPKTALQEWAQASDHHLPIYC 178

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  R G  H   FTV+V++       G+  S + AE+ AA  +L R 
Sbjct: 179 LIKREGAAHSSTFTVLVKVKDYEQ-IGIGYSIKEAEKNAARSLLHRL 224


>gi|330684635|gb|EGG96340.1| ribonuclease III [Staphylococcus epidermidis VCU121]
          Length = 235

 Score =  230 bits (588), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 60/212 (28%), Positives = 97/212 (45%), Gaps = 5/212 (2%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +G+ + N  L ++A +HSS  + +     +  ERLEFLGD +L L +S  LF+      E
Sbjct: 24  LGFEYNNIELYQQAFSHSSFINDFNMDRLDHNERLEFLGDAVLELTVSRYLFDKHPDLPE 83

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G L+    ++V   +    A ++ L   I +     K       S+ +D  E+ + ALYL
Sbjct: 84  GNLTKMRATIVCEPSLVIFANKIKLNELILLGKGEEKTGGRTRPSLISDAFEAFVGALYL 143

Query: 129 DGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           D G+++   F +K               D KT+ QE+ H +      Y++    GP H  
Sbjct: 144 DQGLDIVWDFAEKIIFPYVEDDELDGVVDFKTQFQEFVHRQNKGDVTYRLIKEEGPAHHR 203

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            FT  V +   A A+G   +K+ +EQ AA   
Sbjct: 204 LFTSEVILEKQAVAEGQGKTKKESEQKAAERA 235


>gi|294011699|ref|YP_003545159.1| ribonuclease III [Sphingobium japonicum UT26S]
 gi|292675029|dbj|BAI96547.1| ribonuclease III [Sphingobium japonicum UT26S]
          Length = 237

 Score =  230 bits (588), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 92/215 (42%), Positives = 126/215 (58%), Gaps = 3/215 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L+  IG+A  +R+   +ALTH S    +  +YERLEFLGDRILGLLI+  +++ F    E
Sbjct: 24  LKALIGHAPKDRTAFHQALTHGSA---HAVNYERLEFLGDRILGLLIAEWVYDRFSGEPE 80

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS RFN+LVS ETC++VAR   + + + +    R D  +   ++  DV+E+LI ALYL
Sbjct: 81  GKLSRRFNALVSGETCAEVARGAGVPAHLILGKQARDDGAADSDNVLGDVMEALIGALYL 140

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           +GG+E A T V + W  R        +  K+ LQEWA A     PEY +T RSGP H  +
Sbjct: 141 EGGLEEARTLVRRLWADRVDTQASAPKHPKSALQEWAAANKRKPPEYAMTDRSGPHHALK 200

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           FTV V I G   A     SK+ AE  AA  +L + 
Sbjct: 201 FTVTVSIKGAGEASATGGSKQEAETAAAKALLDKL 235


>gi|261377909|ref|ZP_05982482.1| ribonuclease III [Neisseria cinerea ATCC 14685]
 gi|269145767|gb|EEZ72185.1| ribonuclease III [Neisseria cinerea ATCC 14685]
          Length = 239

 Score =  230 bits (588), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 68/219 (31%), Positives = 114/219 (52%), Gaps = 6/219 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++K++GY F + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F  
Sbjct: 11  HTAIQKKLGYEFRDISLLRQALTHRSC---HAKHNERFEFVGDSILNYTVARMLFDAFPK 67

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+D+   + + +   K       SI AD +E++ AA
Sbjct: 68  LTEGELSRLRASLVNEGVLAEIAAEMDVGEGLYLGTGELKSGGFRRPSILADAMEAMFAA 127

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +  D     A   V   + +R  ++      +D KT LQE   A+    P+Y++  + G 
Sbjct: 128 VSFDADFNTAEKVVRHLFSERVKRADFQNQEKDGKTALQEALQARRFALPKYRIEEQIGH 187

Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221
            +D  F +  ++  L    +    S++AAEQ AA E L+
Sbjct: 188 ANDSMFVISCDLGELGFVCRAKGTSRKAAEQSAAKEALQ 226


>gi|159029006|emb|CAO87467.1| rnc [Microcystis aeruginosa PCC 7806]
          Length = 226

 Score =  230 bits (588), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 71/216 (32%), Positives = 102/216 (47%), Gaps = 9/216 (4%)

Query: 16  AFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            F N  LL +ALTH S  +   E   + ERLEFLGD IL  L+  LL+  + +  E EL+
Sbjct: 6   PFQNALLLTQALTHRSYVNEQSELTENNERLEFLGDAILAFLVGELLYQKYPAMNEAELT 65

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
              ++LV  E  +Q+  E+ L   +R+     KD      ++ AD  E++I A YLD G+
Sbjct: 66  RLRSNLVKEEQLAQLGIEIGLGELMRLGKGAIKDRGRSNPTLLADTFEAIIGAYYLDSGL 125

Query: 133 EVAGTFVDKYWKQRA------LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
                ++   +   A              DAK   Q+WA A F   PEY +   +GP H 
Sbjct: 126 NAVKNYLHGLFIPVASHLVSQQSESPSFIDAKNLFQQWALANFASNPEYAIIDVTGPPHA 185

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             FT  V ++ L    G    K+ A + AA + LKR
Sbjct: 186 REFTAEVRVNNLLYGTGKGKRKQDATKAAAEDALKR 221


>gi|19703497|ref|NP_603059.1| ribonuclease III [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|22654053|sp|Q8RGX3|RNC_FUSNN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|19713585|gb|AAL94358.1| Ribonuclease III [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
          Length = 234

 Score =  230 bits (588), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 62/227 (27%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60
               LE ++ Y F +R+LL+ AL H S+ +  +E    + ERLE LGD +L L+++  L+
Sbjct: 3   NLLDLEHKLNYYFNDRNLLKNALLHKSLGNERKEYKNQTNERLELLGDAVLDLIVAEYLY 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             + +A EG ++     +VS    ++++R++ +  F+ +S            SI AD  E
Sbjct: 63  KSYKNASEGPIAKLKAMIVSEPILAKISRQIGVGKFLMLSRGEVMSGGRNRESILADSFE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +++ A+Y+D  ++ A  F   + KQ    ++  +   D K+ LQE+   +F   P Y++ 
Sbjct: 123 AILGAVYIDSNLDEARVFALSHIKQYIDHIEENEDILDFKSILQEYVQKEFKTVPTYELV 182

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
              GPDH   F + V +      + +  +K+ AEQ++A  +  + G+
Sbjct: 183 AERGPDHMKEFEIQVIVGNYKE-KAVARNKKKAEQLSAKALCIKLGV 228


>gi|104774253|ref|YP_619233.1| ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|103423334|emb|CAI98181.1| Ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
          Length = 231

 Score =  230 bits (588), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 75/231 (32%), Positives = 111/231 (48%), Gaps = 10/231 (4%)

Query: 1   MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55
           M + ++   L+++ G  F +  LLE+A THSS  +        +YE+LEFLGD +L   +
Sbjct: 1   MVSTKFIKMLDEKYGIRFKDVRLLEEAFTHSSYVNENPGKTFGNYEKLEFLGDAVLEFTV 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S  L+ HF    EGEL+   +++V  E  S+VA +      I +     K       ++ 
Sbjct: 61  SDYLYRHFQHLNEGELTRLRSNIVRTEGFSKVALDCGFKEEINLGVGEEKAGGRKRKALL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTP 173
            DV E+   AL+LD GIE    F+ +      + +G     RD KT+LQE       VT 
Sbjct: 121 EDVFEAFNGALFLDQGIEAVEKFLSQTVYP-LIAAGYFTPSRDFKTDLQELLQQNGSVTI 179

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           EY+V   S     P F V V + G   A G   +K+ AEQ AA+  L+   
Sbjct: 180 EYRVLNESQQP--PHFEVEVLVDGKKLASGEGRNKKKAEQDAASHALEHLN 228


>gi|213964554|ref|ZP_03392754.1| ribonuclease III [Corynebacterium amycolatum SK46]
 gi|213952747|gb|EEB64129.1| ribonuclease III [Corynebacterium amycolatum SK46]
          Length = 242

 Score =  230 bits (588), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 107/222 (48%), Gaps = 6/222 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
            A+ ++ L  ++G      SL + ALTH S ++      + ERLEFLGD +LG+ ++  L
Sbjct: 18  EAVDHAPLLDKLGVELPEESL-KLALTHRSFANENGMLTNNERLEFLGDAVLGVCVAEEL 76

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  F    E ++S     +V+    + +AR + L   I +    +    +   SI AD  
Sbjct: 77  YRRFPDRAEQDISKMRAGVVNMYALADLARSIGLGEHILLGRGEKATGGADKHSILADTT 136

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E+L+ A+YL  G EVA   V + + Q    +      RD KT LQE   AK     EY V
Sbjct: 137 EALLGAIYLQHGFEVARETVLRLFNQMIDDAPTESRGRDWKTLLQERLAAKQLPAAEYTV 196

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
              +GPDHD  F V V + G+    G   +K+ AE  AA + 
Sbjct: 197 -RTTGPDHDLTFYVDVLVDGVVKGSGTGATKKEAEMHAAHQA 237


>gi|223986082|ref|ZP_03636108.1| hypothetical protein HOLDEFILI_03416 [Holdemania filiformis DSM
           12042]
 gi|223961955|gb|EEF66441.1| hypothetical protein HOLDEFILI_03416 [Holdemania filiformis DSM
           12042]
          Length = 247

 Score =  230 bits (588), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 67/210 (31%), Positives = 101/210 (48%), Gaps = 5/210 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDS 65
           LE R G    +  L+E+A  HSS  + +++     ERLEF+GD +L L +S  LF     
Sbjct: 7   LEAR-GIHCKDSRLIEQAFVHSSYVNEHKQLKHDNERLEFMGDAVLQLWVSDKLFRLDPP 65

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG ++     LV  E  +  AR+L L SF+++     K       SI AD+ E+++ A
Sbjct: 66  LDEGHMTTFRAQLVCEEALAIYARQLQLNSFLKLGVGEEKTGGRERDSIIADMFEAMLGA 125

Query: 126 LYLDGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           LY D G+E     + +               D KT+LQE+  +    T  Y+V   +GP 
Sbjct: 126 LYEDSGMEPIDNILTEVITPHLSHPEEPIIVDYKTKLQEYVQSDSRKTVTYEVINTTGPS 185

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           + P F V V++ G+    G   SK+ AEQ 
Sbjct: 186 NKPEFEVQVKLEGIILGTGKGNSKKKAEQK 215


>gi|314923852|gb|EFS87683.1| ribonuclease III [Propionibacterium acnes HL001PA1]
 gi|314966091|gb|EFT10190.1| ribonuclease III [Propionibacterium acnes HL082PA2]
 gi|314981862|gb|EFT25955.1| ribonuclease III [Propionibacterium acnes HL110PA3]
 gi|315090788|gb|EFT62764.1| ribonuclease III [Propionibacterium acnes HL110PA4]
 gi|315094941|gb|EFT66917.1| ribonuclease III [Propionibacterium acnes HL060PA1]
 gi|327328032|gb|EGE69801.1| ribonuclease III [Propionibacterium acnes HL103PA1]
          Length = 265

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 63/218 (28%), Positives = 103/218 (47%), Gaps = 6/218 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
           +  L + +G    +  LL+ ALTH S +       + ERLEFLGD IL + ++  L+  F
Sbjct: 38  FLALLEELGIR-CDPQLLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAF 96

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+L+   +++VS  +  ++AR+L +   I++     +      TSI AD  E+L+
Sbjct: 97  PDKPEGQLAKLRSAVVSTVSLGRLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALL 156

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+ L  G+      V   +     ++ +     D KT LQE+        P Y++   S
Sbjct: 157 GAVELSAGLPDVLRLVHHLFDPLVDEADRSGAGTDWKTVLQEYCAEHGFDAPRYEIVG-S 215

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           GPDH+ R+     + G   A     +K+ AEQ AA   
Sbjct: 216 GPDHNRRYCARANVDGRLYAAYTGHNKKEAEQGAARRA 253


>gi|325068495|ref|ZP_08127168.1| ribonuclease III [Actinomyces oris K20]
          Length = 264

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 70/196 (35%), Positives = 96/196 (48%), Gaps = 7/196 (3%)

Query: 19  NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           +  LL+ ALTH S +H      + ERLEFLGD +LG++++  L+       EG+L+    
Sbjct: 26  DAQLLDLALTHRSYAHENGGLPTNERLEFLGDSVLGIIVTEYLYRTHPEVPEGQLAKMRA 85

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           + VS    + VAR+L L  FI++             SI +D VE+LI A YL  G+E   
Sbjct: 86  ATVSEPALAAVARDLGLGEFIKLGKGEALSGGRDKDSILSDTVEALIGATYLTHGLEETR 145

Query: 137 TFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
           T V +    R L S + R    D KT LQE         P Y+VT  +GPDH   FT   
Sbjct: 146 TVVTRLV-SRFLDSARTRGAGLDWKTSLQELTAVHQLGNPAYEVTG-TGPDHQRVFTASA 203

Query: 194 EISGLAPAQGMDCSKR 209
            + G    QG   SK+
Sbjct: 204 IVDGEVLGQGTGSSKK 219


>gi|309805468|ref|ZP_07699513.1| ribonuclease III [Lactobacillus iners LactinV 09V1-c]
 gi|312872453|ref|ZP_07732522.1| ribonuclease III [Lactobacillus iners LEAF 2062A-h1]
 gi|312874441|ref|ZP_07734471.1| ribonuclease III [Lactobacillus iners LEAF 2052A-d]
 gi|312874574|ref|ZP_07734599.1| ribonuclease III [Lactobacillus iners LEAF 2053A-b]
 gi|315653376|ref|ZP_07906298.1| ribonuclease III [Lactobacillus iners ATCC 55195]
 gi|325911776|ref|ZP_08174180.1| ribonuclease III [Lactobacillus iners UPII 143-D]
 gi|308165119|gb|EFO67357.1| ribonuclease III [Lactobacillus iners LactinV 09V1-c]
 gi|311089965|gb|EFQ48384.1| ribonuclease III [Lactobacillus iners LEAF 2053A-b]
 gi|311090053|gb|EFQ48467.1| ribonuclease III [Lactobacillus iners LEAF 2052A-d]
 gi|311092035|gb|EFQ50410.1| ribonuclease III [Lactobacillus iners LEAF 2062A-h1]
 gi|315489301|gb|EFU78941.1| ribonuclease III [Lactobacillus iners ATCC 55195]
 gi|325476282|gb|EGC79444.1| ribonuclease III [Lactobacillus iners UPII 143-D]
          Length = 225

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 79/226 (34%), Positives = 120/226 (53%), Gaps = 6/226 (2%)

Query: 1   MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLIST 57
           M +  + + L+++    F N  LLE+ALTHSS S+ +Q  ++YE+LEFLGD +L L IS 
Sbjct: 1   MVSESFKNELQEKYQIKFNNEQLLEQALTHSSYSNEHQGCKNYEKLEFLGDAVLELAISD 60

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            L+ HF +  EGEL+   +++V  E  SQ A E   +  +++     K       ++  D
Sbjct: 61  YLYRHFPNMNEGELTRMRSNIVRTEGFSQFATECGFSREVKLGKGEEKSGSRTRHTLLED 120

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYK 176
           V E+   AL+LD G+     F+         +      RD KTELQE       +  +YK
Sbjct: 121 VFEAFNGALFLDQGMPAVQHFLHLTVYPLIAEGDFDSSRDYKTELQEKLQVNGAIDIQYK 180

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           V      +  P+FTV + ++G   +QG+  SK+AAEQVAA+  LK 
Sbjct: 181 VIDSD--EAQPKFTVQLIVAGENISQGIGRSKKAAEQVAASVALKN 224


>gi|325126041|gb|ADY85371.1| Ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 231

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 75/231 (32%), Positives = 111/231 (48%), Gaps = 10/231 (4%)

Query: 1   MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55
           M + ++   L+++ G  F +  LLE+A THSS  +        +YE+LEFLGD +L   +
Sbjct: 1   MVSTKFIKMLDEKYGIRFKDVRLLEEAFTHSSYVNENPGKTLGNYEKLEFLGDAVLEFTV 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S  L+ HF    EGEL+   +++V  E  S+VA +      I +     K       ++ 
Sbjct: 61  SDYLYRHFQHLNEGELTRLRSNIVRTEGFSKVALDCGFKEEINLGVGEEKAGGRKRKALL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTP 173
            DV E+   AL+LD GIE    F+ +      + +G     RD KT+LQE       VT 
Sbjct: 121 EDVFEAFNGALFLDQGIEAVEKFLSQTVYP-LIAAGYFTPSRDFKTDLQELLQQNGSVTI 179

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           EY+V   S     P F V V + G   A G   +K+ AEQ AA+  L+   
Sbjct: 180 EYRVLNESQQP--PHFEVEVLVDGKKLASGEGRNKKKAEQDAASHALEHLN 228


>gi|314936605|ref|ZP_07843952.1| ribonuclease III [Staphylococcus hominis subsp. hominis C80]
 gi|313655224|gb|EFS18969.1| ribonuclease III [Staphylococcus hominis subsp. hominis C80]
          Length = 243

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 62/224 (27%), Positives = 103/224 (45%), Gaps = 5/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++    K +G ++ +  + ++A +HSS  + +        ERLEFLGD +L L +S  LF
Sbjct: 15  QFDKKMKMLGLSYTHVDVYQQAFSHSSFINDFNMDRLAHNERLEFLGDAVLELTVSRYLF 74

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + + +  EG L+    ++V   +    A +++L   I +     K       S+ +D  E
Sbjct: 75  DKYPNLPEGNLTKMRATIVCEPSLVIFANKIELNQLILLGKGEEKTGGRTRPSLVSDAFE 134

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTF 179
           + I ALYLD G+EV   F  K        +      D KT+ QE+ H++      Y +  
Sbjct: 135 AFIGALYLDQGLEVVWKFAQKVIFPYVEHNELIGVVDFKTQFQEYIHSQSKGDVTYHLIK 194

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             GP H   FT  V +   A A+G   +K+ +EQ AA     + 
Sbjct: 195 EEGPAHHRLFTSEVILENKAIAKGQGRTKKESEQKAAESAYHKL 238


>gi|228474955|ref|ZP_04059683.1| ribonuclease III [Staphylococcus hominis SK119]
 gi|228270940|gb|EEK12328.1| ribonuclease III [Staphylococcus hominis SK119]
          Length = 243

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 62/224 (27%), Positives = 103/224 (45%), Gaps = 5/224 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++    K +G ++ +  + ++A +HSS  + +        ERLEFLGD +L L +S  LF
Sbjct: 15  QFDKKMKMLGLSYTHLDVYQQAFSHSSFINDFNMDRLAHNERLEFLGDAVLELTVSRYLF 74

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + + +  EG L+    ++V   +    A +++L   I +     K       S+ +D  E
Sbjct: 75  DKYPNLPEGNLTKMRATIVCEPSLVIFANKIELNQLILLGKGEEKTGGRTRPSLVSDAFE 134

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTF 179
           + I ALYLD G+EV   F  K        +      D KT+ QE+ H++      Y +  
Sbjct: 135 AFIGALYLDQGLEVVWKFAQKVIFPYVEHNELIGVVDFKTQFQEYIHSQSKGDVTYHLIK 194

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             GP H   FT  V +   A A+G   +K+ +EQ AA     + 
Sbjct: 195 EEGPAHHRLFTSEVILENKAIAKGQGRTKKESEQKAAESAYHKL 238


>gi|325127806|gb|EGC50714.1| ribonuclease III [Neisseria meningitidis N1568]
          Length = 239

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 70/219 (31%), Positives = 113/219 (51%), Gaps = 6/219 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++KR+GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F  
Sbjct: 11  HAAIQKRLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 67

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 68  LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +  D     A   V   +  R   +      +D KT LQE   A+    P+Y++  + G 
Sbjct: 128 VSFDADFNTAEKVVRHLFADRVRCADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGH 187

Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221
            +D  F V  ++  L    +    S++AAEQ AA E L+
Sbjct: 188 ANDSMFVVSCDLGELGFVCRAKGTSRKAAEQSAAKEALQ 226


>gi|332670942|ref|YP_004453950.1| ribonuclease III [Cellulomonas fimi ATCC 484]
 gi|332339980|gb|AEE46563.1| ribonuclease III [Cellulomonas fimi ATCC 484]
          Length = 258

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 73/220 (33%), Positives = 106/220 (48%), Gaps = 6/220 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDS 65
            L +++G    +  LL  ALTH S +H      + ERLEFLGD +LGL+++  L+     
Sbjct: 7   RLVEKLGVHL-DPELLVLALTHRSFAHEAGGIPTNERLEFLGDTVLGLVVTESLYRRHPE 65

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG L+    + VS    + VARELDL +++ +         +   SI +D +E+L  A
Sbjct: 66  QPEGALAKMRAATVSQRALAGVARELDLGAYVLLGKGELATGGADKDSILSDTLEALFGA 125

Query: 126 LYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YL  G+E A   VD++      A  +     D KT LQE + A     P Y V    GP
Sbjct: 126 VYLAHGLETARVVVDRFVGPTLDAAAALGAGLDWKTSLQELSAALGLGAPSYDVVGE-GP 184

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           DH   FT    I+G     G   +K+ AEQ AA +  +  
Sbjct: 185 DHARTFTARAVIAGEPRGAGSGPAKKLAEQHAAEDAYRAL 224


>gi|163733862|ref|ZP_02141304.1| ribonuclease III [Roseobacter litoralis Och 149]
 gi|161392973|gb|EDQ17300.1| ribonuclease III [Roseobacter litoralis Och 149]
          Length = 228

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 80/207 (38%), Positives = 121/207 (58%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           +      +KR+G+ F   SLL +A+TH+S+S + +   +R+EFLGDR+LGL+++  L   
Sbjct: 4   SAELKAFQKRLGHQFNQPSLLAQAVTHASMSTANRGDNQRMEFLGDRVLGLVMAEALLGL 63

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            + A EG+L+ RFN+LV  ETC+ VARE+DL + +R+             ++  D +E++
Sbjct: 64  DNDATEGQLAPRFNALVRKETCADVAREIDLGAVLRLGRSEMLSGGRRKQALLGDAIEAV 123

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           IAA+Y D G + A   + + W  R  +  +  RDAKT LQEWA A+    P Y+   R G
Sbjct: 124 IAAVYQDAGFDAARALILRLWGDRVHEVEEDARDAKTALQEWAQARGLQPPHYEEVHRKG 183

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209
           PDH P FT+ V++S     Q    SKR
Sbjct: 184 PDHAPIFTISVQLSTGETDQATAGSKR 210


>gi|163783627|ref|ZP_02178616.1| RNase III [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881120|gb|EDP74635.1| RNase III [Hydrogenivirga sp. 128-5-R1-1]
          Length = 222

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 79/224 (35%), Positives = 119/224 (53%), Gaps = 13/224 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFD 64
           +  +E+RIGY F N+ LL++A TH S +       YE LEFLGD +L  +I  +L   F 
Sbjct: 2   FEEVEERIGYTFKNKDLLKQAFTHVSYARDAGVSHYEILEFLGDALLNFIIVDILVKEFP 61

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             +EG L+     L+S E  +++A+ELDL  +I +S            SI  DV E+L A
Sbjct: 62  EKREGALASLKAYLISEEFFNELAQELDLPRYILMSRG------KKNVSIIGDVFEALWA 115

Query: 125 ALYLDGGIE--VAGTFVDKYWKQRALK---SGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           A+Y+D G +  +     ++ +K R ++   S + R+D KT LQE    ++   P Y+V  
Sbjct: 116 AVYVDSGRDCNLVKELFNRLFKDRIIETIRSHRIRKDYKTMLQEITQKRWRERPHYRVIS 175

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             GP+H   FTV   I G   A G   SK+ AEQ AA  ++++ 
Sbjct: 176 VEGPEHAKTFTVESSIKG-VSAVGRGKSKKEAEQEAAKRLVEKL 218


>gi|313884921|ref|ZP_07818673.1| ribonuclease III [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619612|gb|EFR31049.1| ribonuclease III [Eremococcus coleocola ACS-139-V-Col8]
          Length = 233

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 94/206 (45%), Gaps = 5/206 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           ++K  G  F N  +L+ A  H+S ++ + +      ERLEFLGD +L L+ S  LFN + 
Sbjct: 8   IQKNTGITFTNIEILQTAFCHTSYANEHAKEKLKDNERLEFLGDAVLELITSDFLFNTYP 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+L+     LV   + + VAR+  L   I++          F  SI +D  E+ + 
Sbjct: 68  DKPEGQLTRMRAQLVKEPSLALVARKYQLDQLIQLGKGEEASGGRFRDSIVSDAFEAFLG 127

Query: 125 ALYLDGGIEVAGTFVDK-YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           A+YLD G      F+ +   K           D KT  QE   ++  V  +Y++    GP
Sbjct: 128 AIYLDQGFARVTEFLQQALLKPHLQIIKVINIDYKTLFQEKVQSQGPVNIDYRLIKEEGP 187

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKR 209
            H   F V + +     +QG   SK+
Sbjct: 188 AHHRLFVVALYLDDQLVSQGQGYSKK 213


>gi|257453602|ref|ZP_05618892.1| ribonuclease III [Enhydrobacter aerosaccus SK60]
 gi|257449060|gb|EEV24013.1| ribonuclease III [Enhydrobacter aerosaccus SK60]
          Length = 275

 Score =  229 bits (586), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 75/234 (32%), Positives = 111/234 (47%), Gaps = 18/234 (7%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           + + L  ++GY F N +L   AL H S    +  +YERLEFLGD +LG++I+  LF  + 
Sbjct: 35  QLTALFYQMGYQFDNVNLPIMALMHRSFDSEH--NYERLEFLGDALLGVIIAEALFLRYP 92

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG LS    SLV  ET   +A++L+L+ ++ +    RK       SI AD VE+LI 
Sbjct: 93  DYNEGRLSRLRASLVREETLVIIAKQLNLSDYLILGVGERKGGGRQRASILADSVEALIG 152

Query: 125 ALYLDG-GIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           A+YLD    +     V  +++     +K  K  +DAK+ LQE   A     P Y+VT   
Sbjct: 153 AIYLDSQNFDTVKACVLAWFEDLFEKVKEQKVLKDAKSRLQELLQAHQLALPRYEVTETI 212

Query: 182 GPDHDPRFTVVVEIS-------------GLAPAQGMDCSKRAAEQVAAAEVLKR 222
           G   +  F V  ++                A       S+R AEQ  A  +L +
Sbjct: 213 GNAPNQIFVVSCQVEIIFDNKTAKPIAPTQALVTAQGESRRIAEQRCAEAMLAK 266


>gi|289550987|ref|YP_003471891.1| Ribonuclease III [Staphylococcus lugdunensis HKU09-01]
 gi|315658482|ref|ZP_07911354.1| ribonuclease III [Staphylococcus lugdunensis M23590]
 gi|289180519|gb|ADC87764.1| Ribonuclease III [Staphylococcus lugdunensis HKU09-01]
 gi|315496811|gb|EFU85134.1| ribonuclease III [Staphylococcus lugdunensis M23590]
          Length = 243

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 62/220 (28%), Positives = 97/220 (44%), Gaps = 5/220 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           R+      +G  F N  L ++A +HSS  + +     E  ERLEFLGD +L + +S  LF
Sbjct: 16  RFEQKMNELGIHFDNIKLYQQAFSHSSFINDFNMNRLEHNERLEFLGDAVLEVTVSRYLF 75

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           +   +  EG L+    ++V   +    A ++ L   I +     K       S+ +D  E
Sbjct: 76  DKHPNLPEGNLTKMRATIVCEPSLVIFANKIQLNQLILLGKGEEKTGGRTRPSLISDAFE 135

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTF 179
           + + ALYLD G+     F +K               D KT+ QE+ H++      Y++  
Sbjct: 136 AFVGALYLDQGLGAVWHFAEKVIFPYVEDDELIGVVDFKTQFQEFVHSQNKGDVMYRLVK 195

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
             GP H   FT  V +   A A G   +K+ +EQ AA   
Sbjct: 196 EEGPAHHRLFTSEVILEQQAIAHGQGKTKKESEQKAAERA 235


>gi|254511570|ref|ZP_05123637.1| ribonuclease III [Rhodobacteraceae bacterium KLH11]
 gi|221535281|gb|EEE38269.1| ribonuclease III [Rhodobacteraceae bacterium KLH11]
          Length = 225

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 78/206 (37%), Positives = 114/206 (55%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           +      ++R+GY F++  LL ++LTH S+S S +   +RLEFLGDR+LGL+++T L   
Sbjct: 4   SAEIKAFQQRLGYEFSDPELLVRSLTHGSVSSSTRPDNQRLEFLGDRVLGLVMATALLEA 63

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
              A EG+L+ RFN+LV  E C+ VAR++DL + +++             ++  D +E++
Sbjct: 64  DKKASEGQLAPRFNALVRKEACADVARQIDLGAVLKLGRSEMLSGGRRKQALLGDAMEAV 123

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           IAA+Y D G E A   +   W  R        RDAKT LQEWA A+    P Y    R+G
Sbjct: 124 IAAIYRDAGFEAARDVILALWGDRIHMVEADARDAKTSLQEWAQARGQKPPAYVEVKRTG 183

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSK 208
           PDH P FT+   +     AQ    SK
Sbjct: 184 PDHAPVFTIAARLQDGTEAQATAGSK 209


>gi|288575033|ref|ZP_06393390.1| ribonuclease III [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570774|gb|EFC92331.1| ribonuclease III [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 244

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 81/224 (36%), Positives = 119/224 (53%), Gaps = 8/224 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNH 62
             S ++ R+GY+F +  LL +ALTHSS +H    +   ERLEFLGD +L L  ST LF  
Sbjct: 9   NLSLIQDRLGYSFTDIELLREALTHSSYAHESGLRSWNERLEFLGDAVLELATSTRLFRA 68

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV-CSFMTSIQADVVES 121
                EG L+     LV  E     A  L L+  +RV+  LRK      ++S+ AD +E+
Sbjct: 69  MKDMDEGGLTRLRARLVRKEALLTWAEALGLSGILRVNRGLRKKGEGCDLSSMHADAIEA 128

Query: 122 LIAALYLDGGIEVAGTFVDKYW-----KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           +  A+Y+DGG ++A + V++Y      K   ++ G    D K+ELQ+    K    PEY+
Sbjct: 129 IFGAVYMDGGYDMAESVVNRYLDFLFEKGDYIQDGNSSIDPKSELQQILQIKGEPLPEYR 188

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +  R GP H P F V + +SG+  + G   S + AE  AA + L
Sbjct: 189 IMSREGPPHSPSFEVELYVSGVLLSSGRGRSIKEAEVQAALDGL 232


>gi|326773636|ref|ZP_08232919.1| ribonuclease III [Actinomyces viscosus C505]
 gi|326636866|gb|EGE37769.1| ribonuclease III [Actinomyces viscosus C505]
          Length = 264

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 70/196 (35%), Positives = 96/196 (48%), Gaps = 7/196 (3%)

Query: 19  NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           +  LL+ ALTH S +H      + ERLEFLGD +LG++++  L+       EG+L+    
Sbjct: 26  DAHLLDLALTHRSYAHENGGLPTNERLEFLGDSVLGIIVTEYLYRTHPEVPEGQLAKMRA 85

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           + VS    + VAR+L L  FI++             SI +D VE+LI A YL  G+E   
Sbjct: 86  ATVSEPALAAVARDLGLGEFIKLGKGEALSGGRDKDSILSDTVEALIGATYLTHGLEETR 145

Query: 137 TFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
           T V +    R L S + R    D KT LQE         P Y+VT  +GPDH   FT   
Sbjct: 146 TVVTRLV-SRFLDSARTRGAGLDWKTSLQELTAVHQLGNPAYEVTG-TGPDHQRVFTASA 203

Query: 194 EISGLAPAQGMDCSKR 209
            + G    QG   SK+
Sbjct: 204 IVDGEVLGQGTGSSKK 219


>gi|119717505|ref|YP_924470.1| ribonuclease III [Nocardioides sp. JS614]
 gi|119538166|gb|ABL82783.1| RNAse III [Nocardioides sp. JS614]
          Length = 276

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 60/209 (28%), Positives = 97/209 (46%), Gaps = 5/209 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH 62
            Y+ L   +G    +  LLE+ALTH S ++      + ERLEFLGD +LG++++  L+  
Sbjct: 34  NYAELRAALGDPTLDPELLERALTHRSFAYENGGLPTNERLEFLGDSVLGVVVTETLYLK 93

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
                EG L+    ++V+A   ++V R + +   +++             SI +D VE++
Sbjct: 94  HPDLSEGRLAKLRAAVVNARALAEVGRRIGVGEHVKLGRGEESTGGRHKASILSDTVEAV 153

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFR 180
           I A++L GG   +   V + +      +       D KT LQE +       PEY V   
Sbjct: 154 IGAVHLSGGFTTSAVVVHRLFDPLIEAASALGAGLDWKTSLQELSAEHGLGVPEY-VIED 212

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            GPDH   FT  V +       G+  SK+
Sbjct: 213 DGPDHMKTFTAQVRVGEGLYGNGVGRSKK 241


>gi|93005197|ref|YP_579634.1| ribonuclease III [Psychrobacter cryohalolentis K5]
 gi|92392875|gb|ABE74150.1| RNAse III [Psychrobacter cryohalolentis K5]
          Length = 265

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 115/224 (51%), Gaps = 7/224 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           R + L +++GY F + SL + ALTH S     +++YERLEFLGD +LG+++   L++ + 
Sbjct: 33  RLAVLTRKLGYVFNDLSLPKLALTHRSF--DSKKNYERLEFLGDALLGMIVGEALYHRYP 90

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EG L+    +LV  E+   +A+ L+L++ + +    RK       SI AD VESLI 
Sbjct: 91  TQNEGRLTRMRATLVRQESLVIIAQNLELSNQLILGVGERKGGGRNRASILADAVESLIG 150

Query: 125 ALYLDG-GIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           A+YLD   + +    V  ++      +   K  +DAK+ LQEW  +K    P Y++    
Sbjct: 151 AIYLDSQDMNITRECVLSWYGDLIDNVNDQKALKDAKSRLQEWLQSKQFDLPHYELMETR 210

Query: 182 GPDHDPRFTVVVEIS--GLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           G      F V  +++            S+R AEQ AA  ++ + 
Sbjct: 211 GNAPHQIFVVRCQVNILNCPDITESGESRRIAEQKAAELMINQL 254


>gi|119476421|ref|ZP_01616772.1| ribonuclease III [marine gamma proteobacterium HTCC2143]
 gi|119450285|gb|EAW31520.1| ribonuclease III [marine gamma proteobacterium HTCC2143]
          Length = 229

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 110/207 (53%), Gaps = 6/207 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           +  L +++G+ F + SL++ AL+H S+     ++ ERLEFLGD I+  L++  LF  F  
Sbjct: 8   HHLLIQKLGHEFNDPSLVDLALSHRSVG---AKNNERLEFLGDSIVNFLMAEALFQKFPE 64

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
            +EGELS     LV  ET +++A+E  +   + +     K       SI AD VE+LI A
Sbjct: 65  CREGELSQMRAQLVKGETLAEIAKEFSVGEHLNLGPGELKSGGYRRESILADAVEALIGA 124

Query: 126 LYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YLDGG+      V ++++ R   +      +DAKT LQEW  A+    P+Y +   SG 
Sbjct: 125 IYLDGGMAACNEHVPRWFESRLDLISPRNSNKDAKTRLQEWLQARKMPLPQYVLINTSGS 184

Query: 184 DHDPRFTVVVEISG-LAPAQGMDCSKR 209
           DH  +FT+  +I        G   S+R
Sbjct: 185 DHQQQFTIECDIHHLQQRFTGDGSSRR 211


>gi|225621561|ref|YP_002722820.1| ribonuclease III [Brachyspira hyodysenteriae WA1]
 gi|225216382|gb|ACN85116.1| ribonuclease III [Brachyspira hyodysenteriae WA1]
          Length = 243

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 70/222 (31%), Positives = 116/222 (52%), Gaps = 6/222 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTLLFNH 62
            +  +  + Y F N+  L +A+TH + ++  ++     +RLEFLGD +L L+IS  LF  
Sbjct: 7   LNNCQTALKYEFRNKDHLLEAITHRTYANESKKKMKYNQRLEFLGDSVLSLIISDYLFKK 66

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           + S+KEG LS   +SLVS ++ + +++EL L  F+ +          +  ++  D+ E++
Sbjct: 67  YSSSKEGLLSKVKSSLVSQKSLADISKELKLGDFLLLGHGEEASGGRYRDNMLEDLFEAI 126

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           + A+YLD GI  A  FV + +K+R   L    F +D KT  QE    K   +P YK    
Sbjct: 127 VGAIYLDSGITSASKFVMRAYKERLKNLDIENFDKDYKTIFQELIQKKHKTSPIYKSYEY 186

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              +H+  F   V ++    A G+  SK+ AE  AA + L +
Sbjct: 187 YDNNHE-MFKSEVYVNDKNFALGVGKSKKEAETNAAKKALDK 227


>gi|163846691|ref|YP_001634735.1| ribonuclease III [Chloroflexus aurantiacus J-10-fl]
 gi|222524496|ref|YP_002568967.1| Ribonuclease III [Chloroflexus sp. Y-400-fl]
 gi|254807243|sp|A9WJ69|RNC_CHLAA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807245|sp|B9LB70|RNC_CHLSY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|163667980|gb|ABY34346.1| Ribonuclease III [Chloroflexus aurantiacus J-10-fl]
 gi|222448375|gb|ACM52641.1| Ribonuclease III [Chloroflexus sp. Y-400-fl]
          Length = 244

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 63/209 (30%), Positives = 101/209 (48%), Gaps = 7/209 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHS------YQESYERLEFLGDRILGLLISTL 58
           R + LE+ IG  F +R+LL+ A  H S+ +       +    ERLEFLGD +L  + +T 
Sbjct: 4   RLAELERAIGITFRDRTLLQTAFMHRSLFNEQPHLLNHLTDNERLEFLGDSVLHFVTTTW 63

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF  F    E  L+    +LVS +  ++ A + +L  +  +S             + AD+
Sbjct: 64  LFETFPDQDEATLTNWRAALVSTKGLAECAAQFNLGQYAYLSRGEDNPGGRSRQKLLADL 123

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
            E+L+ A+YLD G+E A  F+  +W+ R  +      D  T LQE   A+F   P+Y + 
Sbjct: 124 FEALVGAIYLDQGLETARAFIVPFWQARIEQIIHIDLDPTTRLQELMQARFKQLPDYSIE 183

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              GP+H   + + V ++G     G   S
Sbjct: 184 EERGPEHQREYVMAVTVAGRK-FTGSGSS 211


>gi|91789485|ref|YP_550437.1| ribonuclease III [Polaromonas sp. JS666]
 gi|91698710|gb|ABE45539.1| RNAse III [Polaromonas sp. JS666]
          Length = 233

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 73/215 (33%), Positives = 109/215 (50%), Gaps = 6/215 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           S+     L+KR+ + F+N  LL +ALTH S S    +  ER+EFLGD +L L ++ LL+ 
Sbjct: 7   SSPDLLALQKRLQHEFSNPKLLAQALTHRSFS---ADHNERIEFLGDSVLNLAVAGLLYE 63

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
                 EG+LS    +LV  +T  ++A  L L   +R+     +       SI AD +E+
Sbjct: 64  QLSELPEGDLSRVRANLVKQDTLHKLAVTLGLPEMLRLGEGEARSGGQKRPSILADALEA 123

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           +I A+YLD G + A   V + ++   +        +D KTELQEW   +    P Y+V  
Sbjct: 124 VIGAVYLDAGFDKADQLVRRLFRNVEINPQMQAIGKDPKTELQEWLQGRKMNLPIYRVVG 183

Query: 180 RSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQ 213
             G  H   F V  EI+    A+ G+  S+RA EQ
Sbjct: 184 TMGAAHKQTFDVECEITEYGRAERGIGGSRRAGEQ 218


>gi|152989964|ref|YP_001355686.1| ribonuclease III [Nitratiruptor sp. SB155-2]
 gi|189043328|sp|A6Q1H0|RNC_NITSB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|151421825|dbj|BAF69329.1| ribonuclease III [Nitratiruptor sp. SB155-2]
          Length = 226

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 69/205 (33%), Positives = 110/205 (53%), Gaps = 4/205 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +    EK++GY+F ++ LL++ALTH S       + ERLEFLGD +L L++   LF  F 
Sbjct: 3   QLEEFEKKLGYSFEDKKLLKEALTHKSYKSPV--NNERLEFLGDAVLDLVVGEYLFKKFP 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            A EGELS    SLV+ E  +++A++LD+  +I +S     +      S+ ++  E+++ 
Sbjct: 61  KANEGELSKLRASLVNEEGFAKLAQKLDIGKYIFISQAEENNQGRTKPSLLSNAFEAVMG 120

Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YL+ G+E       K  ++    +      +D KT LQE+  A +G+TP YK+   SG
Sbjct: 121 AIYLEKGLEKVRELSLKLLEEAYPKIDLDSLFKDFKTALQEFTQAHYGITPTYKLLGSSG 180

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCS 207
           PDH   F V V +     +     S
Sbjct: 181 PDHKKEFEVAVLLHEETISTAKGRS 205


>gi|304440214|ref|ZP_07400104.1| ribonuclease III [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371263|gb|EFM24879.1| ribonuclease III [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 226

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 111/228 (48%), Gaps = 12/228 (5%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M  L+Y      I Y F N  L   ALTHSS S+  +E    S ERLEFLGD +L L++ 
Sbjct: 1   MKNLKYL----NISYEFKNEELFRTALTHSSYSNENKEKCKYSNERLEFLGDAVLDLVVG 56

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
              F  F   +EG+LS+    +V   + +++A++++L   I +     K+      SI A
Sbjct: 57  EYFFKQF-KVREGQLSMMRAKVVKESSLAKIAKKINLGEMILLGKGEEKNNGREKLSILA 115

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D +E+LI A+YLD   +VA  F+     +   K+ +     D K+ LQE          E
Sbjct: 116 DSLEALIGAIYLDSSFDVAKEFILDIMSEELEKAHESSYLVDYKSRLQEVCQMAHL-NIE 174

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           Y +   +GP +   F   V + G    +G   S + +EQ+AA + L +
Sbjct: 175 YVLEKTNGPLNSRVFYSKVIVDGKVFGRGEGNSIKKSEQMAAKDALSK 222


>gi|282854597|ref|ZP_06263932.1| ribonuclease III [Propionibacterium acnes J139]
 gi|282582179|gb|EFB87561.1| ribonuclease III [Propionibacterium acnes J139]
          Length = 246

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 63/218 (28%), Positives = 103/218 (47%), Gaps = 6/218 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
           +  L + +G    +  LL+ ALTH S +       + ERLEFLGD IL + ++  L+  F
Sbjct: 19  FLALLEELGIR-CDPQLLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAF 77

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+L+   +++VS  +  ++AR+L +   I++     +      TSI AD  E+L+
Sbjct: 78  PDKPEGQLAKLRSAVVSTVSLGRLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALL 137

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+ L  G+      V   +     ++ +     D KT LQE+        P Y++   S
Sbjct: 138 GAVELSAGLPDVLRLVHHLFDPLVDEADRSGAGTDWKTVLQEYCAEHGFDAPRYEIVG-S 196

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           GPDH+ R+     + G   A     +K+ AEQ AA   
Sbjct: 197 GPDHNRRYCARANVDGRLYAAYTGHNKKEAEQGAARRA 234


>gi|325294757|ref|YP_004281271.1| ribonuclease 3 [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065205|gb|ADY73212.1| Ribonuclease 3 [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 234

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 91/232 (39%), Positives = 124/232 (53%), Gaps = 10/232 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTL 58
           M    +  LE++I Y F ++ LL+KALTH S S     +E+YE LEFLGD ++GL++S  
Sbjct: 1   MEKKSFEELERKINYFFKDKKLLKKALTHKSFSFEKDSEENYEVLEFLGDAVIGLIVSEE 60

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L   F +  EGELS     LVS  + S++A+ +DL S+I +            +SI  DV
Sbjct: 61  LIKRFPTKTEGELSQIRAFLVSEPSLSELAKTVDLGSYIYLGKGEHLSGGREKSSILCDV 120

Query: 119 VESLIAALYLDGGIEVA-----GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP 173
            ESL  A+YLDGG E A       F+ K W    L+     +D K+ LQE    +F V P
Sbjct: 121 FESLFGAIYLDGGFENAKEVFKRNFLMKLW--EILEEAVTYKDFKSFLQEVTQKEFKVIP 178

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            Y V    GP+H+  FTV   +  L        SKR+AEQ AA E+LK  G+
Sbjct: 179 SYSVIKAEGPEHEKIFTVECRVKDLKTVS-TGKSKRSAEQQAAKEMLKVLGV 229


>gi|38234119|ref|NP_939886.1| ribonuclease III [Corynebacterium diphtheriae NCTC 13129]
 gi|81564732|sp|Q6NGH3|RNC_CORDI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|38200381|emb|CAE50069.1| ribonuclease III [Corynebacterium diphtheriae]
          Length = 249

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 70/222 (31%), Positives = 110/222 (49%), Gaps = 6/222 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
            ++ +  L   +G     R LL  ALTH S ++      + ERLEFLGD +LGL ++  L
Sbjct: 19  ESVDHQPLIDALGVDIP-RELLVLALTHRSFANENGMLPNNERLEFLGDSVLGLSVAGQL 77

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  + S+ E ++S    S+VS    + +ARE++L   I +    +        SI AD  
Sbjct: 78  YQQYTSSPESDISKMRASIVSRYGLADIAREINLGQHILLGKGEQLHDGRSKDSILADTT 137

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKV 177
           E+L+ A+YL  G E+A   V + +K +   +      +D KT LQE    +    P Y  
Sbjct: 138 EALLGAIYLAHGFEIARDTVLRLFKHKIDTASATGLHQDWKTTLQERLAERNLEMPTYTS 197

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           T  +GP+H+  FT  V + G     G+  +K+ AEQ AA + 
Sbjct: 198 T-VTGPEHEQTFTAEVAVHGTVLGTGVGTNKKLAEQAAAHKA 238


>gi|313807892|gb|EFS46373.1| ribonuclease III [Propionibacterium acnes HL087PA2]
 gi|313825876|gb|EFS63590.1| ribonuclease III [Propionibacterium acnes HL063PA1]
 gi|314986461|gb|EFT30553.1| ribonuclease III [Propionibacterium acnes HL005PA2]
 gi|314990820|gb|EFT34911.1| ribonuclease III [Propionibacterium acnes HL005PA3]
 gi|315083515|gb|EFT55491.1| ribonuclease III [Propionibacterium acnes HL027PA2]
 gi|327329789|gb|EGE71545.1| ribonuclease III [Propionibacterium acnes HL096PA3]
 gi|327446474|gb|EGE93128.1| ribonuclease III [Propionibacterium acnes HL013PA2]
 gi|328752230|gb|EGF65846.1| ribonuclease III [Propionibacterium acnes HL020PA1]
          Length = 265

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 64/218 (29%), Positives = 103/218 (47%), Gaps = 6/218 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
           +  L + +G    +  LL+ ALTH S +       + ERLEFLGD IL + ++  L+  F
Sbjct: 38  FLALLEELGIR-CDPQLLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAF 96

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+L+   +++VS  +  Q+AR+L +   I++     +      TSI AD  E+L+
Sbjct: 97  PDKPEGQLAKLRSAVVSTVSLGQLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALL 156

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+ L  G+      V   +     ++ +     D KT LQE+        P Y++   S
Sbjct: 157 GAVELSAGLPDVLRLVHHLFDPLVDEADRSGAGTDWKTVLQEYCAEHGFDAPRYEIVG-S 215

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           GPDH+ R+     + G   A     +K+ AEQ AA   
Sbjct: 216 GPDHNRRYCARANVDGRLHAAYTGHNKKEAEQGAARRA 253


>gi|238026617|ref|YP_002910848.1| ribonuclease III [Burkholderia glumae BGR1]
 gi|237875811|gb|ACR28144.1| Ribonuclease III [Burkholderia glumae BGR1]
          Length = 427

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 67/205 (32%), Positives = 100/205 (48%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MSQSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L++A  +R+     +       SI AD  E++I
Sbjct: 58  GKLDEGDLSRVRANLVKQQSLYEIAQALNIADGLRLGEGELRSGGFRRPSILADAFEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG E A   + + +      +      +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202


>gi|149200806|ref|ZP_01877781.1| Ribonuclease III [Roseovarius sp. TM1035]
 gi|149145139|gb|EDM33165.1| Ribonuclease III [Roseovarius sp. TM1035]
          Length = 227

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 79/206 (38%), Positives = 117/206 (56%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           +      + R+G+ F N +LL +ALTHSS++   ++  +RLEFLGDR+LGL+++  L + 
Sbjct: 4   SADIKAFQARLGHEFTNAALLVRALTHSSMATPNRDDNQRLEFLGDRVLGLVMAEALLSQ 63

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
              A EG+L+ RFN+LV  E C+ VARE+DL   +++             ++  D +E++
Sbjct: 64  DQGATEGQLAPRFNALVRKEACADVAREIDLGGVLKLGRSEMLSGGRRKEALLGDAMEAV 123

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           IAA+YLD G E A   V + W  R     +  RDAKT LQEWA A+    P+Y    R G
Sbjct: 124 IAAVYLDAGFETARGVVLRLWGARLGAVKEDARDAKTSLQEWAQARGLPPPDYVELARKG 183

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSK 208
           PDH P FT+  ++     A+    SK
Sbjct: 184 PDHAPIFTICAQLKSGQRAEATAGSK 209


>gi|116514343|ref|YP_813249.1| ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|116093658|gb|ABJ58811.1| RNAse III [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 231

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 75/231 (32%), Positives = 111/231 (48%), Gaps = 10/231 (4%)

Query: 1   MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55
           M + ++   L+++ G  F +  LLE+A THSS  +        +YE+LEFLGD +L   +
Sbjct: 1   MVSTKFIKMLDEKYGIRFKDVRLLEEAFTHSSYLNENPGKTLGNYEKLEFLGDAVLEFTV 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S  L+ HF    EGEL+   +++V  E  S+VA +      I +     K       ++ 
Sbjct: 61  SDYLYRHFQHLNEGELTRLRSNIVRTEGFSKVALDCGFKEEINLGVGEEKAGGRKRKALL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTP 173
            DV E+   AL+LD GIE    F+ +      + +G     RD KT+LQE       VT 
Sbjct: 121 EDVFEAFNGALFLDQGIEAVEKFLSQTVYP-LIAAGYFTPSRDFKTDLQELLQQNGSVTI 179

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           EY+V   S     P F V V + G   A G   +K+ AEQ AA+  L+   
Sbjct: 180 EYRVLNESQQP--PHFEVEVLVDGKKLASGEGRNKKKAEQDAASHALEHLN 228


>gi|323342032|ref|ZP_08082265.1| ribonuclease III [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464457|gb|EFY09650.1| ribonuclease III [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 226

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 68/209 (32%), Positives = 105/209 (50%), Gaps = 4/209 (1%)

Query: 19  NRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
           N+ L+  A  HSS  +  +E     ERLEF+GD +L + +S  LF H D   EG++++  
Sbjct: 16  NKDLINNAFIHSSYVNEAEELLEDNERLEFMGDAVLQICVSERLFKHQDHFNEGDMTLYR 75

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
             LV  +  +Q + +L L  ++ +     K+      SI AD+ ES I ALYLD GI+  
Sbjct: 76  AKLVCEDALAQYSLKLKLNDYLMLGMGEEKNGGRVRVSIIADLFESFIGALYLDSGIDSV 135

Query: 136 GTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
              +D        +       D KT+LQE+  +    +  Y+V    GP + P F VVV+
Sbjct: 136 NRVLDSVMNDAFNELESLSITDYKTKLQEYIQSDSRKSVSYEVINVVGPSNAPEFEVVVK 195

Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +  L   QG   SK+ AEQ+AA +  ++ 
Sbjct: 196 LDELIFGQGKGLSKKKAEQMAAKDAFEKL 224


>gi|313763647|gb|EFS35011.1| ribonuclease III [Propionibacterium acnes HL013PA1]
 gi|313773586|gb|EFS39552.1| ribonuclease III [Propionibacterium acnes HL074PA1]
 gi|313794040|gb|EFS42064.1| ribonuclease III [Propionibacterium acnes HL110PA1]
 gi|313801428|gb|EFS42679.1| ribonuclease III [Propionibacterium acnes HL110PA2]
 gi|313811637|gb|EFS49351.1| ribonuclease III [Propionibacterium acnes HL083PA1]
 gi|313813554|gb|EFS51268.1| ribonuclease III [Propionibacterium acnes HL025PA1]
 gi|313816825|gb|EFS54539.1| ribonuclease III [Propionibacterium acnes HL059PA1]
 gi|313829556|gb|EFS67270.1| ribonuclease III [Propionibacterium acnes HL063PA2]
 gi|313831378|gb|EFS69092.1| ribonuclease III [Propionibacterium acnes HL007PA1]
 gi|313834990|gb|EFS72704.1| ribonuclease III [Propionibacterium acnes HL056PA1]
 gi|313839852|gb|EFS77566.1| ribonuclease III [Propionibacterium acnes HL086PA1]
 gi|314914649|gb|EFS78480.1| ribonuclease III [Propionibacterium acnes HL005PA4]
 gi|314919238|gb|EFS83069.1| ribonuclease III [Propionibacterium acnes HL050PA1]
 gi|314920852|gb|EFS84683.1| ribonuclease III [Propionibacterium acnes HL050PA3]
 gi|314930530|gb|EFS94361.1| ribonuclease III [Propionibacterium acnes HL067PA1]
 gi|314957411|gb|EFT01514.1| ribonuclease III [Propionibacterium acnes HL002PA1]
 gi|314963605|gb|EFT07705.1| ribonuclease III [Propionibacterium acnes HL082PA1]
 gi|314968563|gb|EFT12661.1| ribonuclease III [Propionibacterium acnes HL037PA1]
 gi|314974253|gb|EFT18349.1| ribonuclease III [Propionibacterium acnes HL053PA1]
 gi|314976742|gb|EFT20837.1| ribonuclease III [Propionibacterium acnes HL045PA1]
 gi|314984443|gb|EFT28535.1| ribonuclease III [Propionibacterium acnes HL005PA1]
 gi|315079459|gb|EFT51452.1| ribonuclease III [Propionibacterium acnes HL053PA2]
 gi|315081314|gb|EFT53290.1| ribonuclease III [Propionibacterium acnes HL078PA1]
 gi|315095393|gb|EFT67369.1| ribonuclease III [Propionibacterium acnes HL038PA1]
 gi|315099274|gb|EFT71250.1| ribonuclease III [Propionibacterium acnes HL059PA2]
 gi|315100492|gb|EFT72468.1| ribonuclease III [Propionibacterium acnes HL046PA1]
 gi|315109074|gb|EFT81050.1| ribonuclease III [Propionibacterium acnes HL030PA2]
 gi|327328345|gb|EGE70107.1| ribonuclease III [Propionibacterium acnes HL096PA2]
 gi|327334306|gb|EGE76020.1| ribonuclease III [Propionibacterium acnes HL097PA1]
 gi|327444129|gb|EGE90783.1| ribonuclease III [Propionibacterium acnes HL043PA2]
 gi|327444991|gb|EGE91645.1| ribonuclease III [Propionibacterium acnes HL043PA1]
 gi|327451940|gb|EGE98594.1| ribonuclease III [Propionibacterium acnes HL092PA1]
 gi|327455025|gb|EGF01680.1| ribonuclease III [Propionibacterium acnes HL087PA3]
 gi|327457687|gb|EGF04342.1| ribonuclease III [Propionibacterium acnes HL083PA2]
 gi|328755143|gb|EGF68759.1| ribonuclease III [Propionibacterium acnes HL087PA1]
 gi|328758079|gb|EGF71695.1| ribonuclease III [Propionibacterium acnes HL025PA2]
 gi|328760097|gb|EGF73676.1| ribonuclease III [Propionibacterium acnes HL099PA1]
          Length = 265

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 64/218 (29%), Positives = 103/218 (47%), Gaps = 6/218 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
           +  L + +G    +  LL+ ALTH S +       + ERLEFLGD IL + ++  L+  F
Sbjct: 38  FLALLEELGIR-CDPQLLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAF 96

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+L+   +++VS  +  Q+AR+L +   I++     +      TSI AD  E+L+
Sbjct: 97  PDKPEGQLAKLRSAVVSTVSLGQLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALL 156

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+ L  G+      V   +     ++ +     D KT LQE+        P Y++   S
Sbjct: 157 GAVELSAGLPDVLRLVHHLFDPLVDEADRSGAGTDWKTVLQEYCAEHGFDAPRYEIVG-S 215

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           GPDH+ R+     + G   A     +K+ AEQ AA   
Sbjct: 216 GPDHNRRYCARANVDGRLHAAYTGHNKKEAEQGAARRA 253


>gi|145593838|ref|YP_001158135.1| ribonuclease III [Salinispora tropica CNB-440]
 gi|145303175|gb|ABP53757.1| RNAse III [Salinispora tropica CNB-440]
          Length = 252

 Score =  229 bits (584), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 69/209 (33%), Positives = 106/209 (50%), Gaps = 9/209 (4%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDS 65
            LE   G A  +  LLE+ALTH S ++      + ERLEFLGD +LG++I+T LF++   
Sbjct: 13  HLEAAFGVAL-DPELLERALTHRSYAYENGGLPTNERLEFLGDSVLGVVITTALFHNHPD 71

Query: 66  AKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
             EG+L+    S+V+    ++VAR L    L  ++ +             SI AD +E+L
Sbjct: 72  LPEGQLAKLRASVVNMRALAEVARGLGPTGLGPYLLLGKGEESTGGRDKASILADTLEAL 131

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           + A+YL+ G+E   T + + +     +S       D KT LQE   A+    PEY++   
Sbjct: 132 LGAIYLESGLETVATVIHRLFDPLMAESAGRGAALDWKTSLQELTAAQGLGVPEYRIEG- 190

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           +GPDH   FT  V ++G         SK+
Sbjct: 191 TGPDHLKTFTAWVVVAGRRYGGAEGRSKK 219


>gi|81428322|ref|YP_395322.1| ribonuclease (RNase III) [Lactobacillus sakei subsp. sakei 23K]
 gi|90101628|sp|Q38XR8|RNC_LACSS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|78609964|emb|CAI55011.1| Ribonuclease (RNase III) [Lactobacillus sakei subsp. sakei 23K]
          Length = 230

 Score =  229 bits (584), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 61/213 (28%), Positives = 106/213 (49%), Gaps = 7/213 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M A   S L  R G  F N +LL++A THSS  + ++E      ERLEFLGD ++ + +S
Sbjct: 1   MDAALVSELRARYGIEFNNLALLDEAFTHSSYVNEHRELGLRDNERLEFLGDAVMEITVS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+  +    EG+L+    ++V  ++ S  ++E     +IR+     K+      ++  
Sbjct: 61  EYLYKKYPDWPEGKLTRLRAAIVCTKSFSSFSKEAHFDRYIRLGKGEEKNGARARATLLE 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPE 174
           D+ E+   AL+LD G +    FV +    + +++G+F  + D KT LQE+      +  +
Sbjct: 121 DLFEAFNGALFLDQGRDAVVDFVSQVIFPK-IEAGEFSDQTDYKTNLQEFLQQDGEIEID 179

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           Y++    GP HD +F V V +       G+  +
Sbjct: 180 YQLLAEVGPSHDRQFEVDVLVGDRVLGSGVGRN 212


>gi|313683639|ref|YP_004061377.1| RNAase iii [Sulfuricurvum kujiense DSM 16994]
 gi|313156499|gb|ADR35177.1| RNAse III [Sulfuricurvum kujiense DSM 16994]
          Length = 226

 Score =  229 bits (584), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 68/207 (32%), Positives = 103/207 (49%), Gaps = 4/207 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               L++R+GY F N+ LL +ALTH S    Y  + ERLEFLGD +L L++   L+  F 
Sbjct: 3   NLQALQERLGYTFQNKELLIEALTHKSYKQPY--NNERLEFLGDAVLDLIVGEYLYKKFR 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+LS    SLV+    + +A  L+L   I +S+    +     +S+ ++  E+++ 
Sbjct: 61  GYDEGKLSKMRASLVNEGGFTSLANHLNLGEHIFLSNAEENNSGRTKSSLLSNAFEAVMG 120

Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YL+ G+           +     +      +D KT LQE   A +G TPEY++    G
Sbjct: 121 AMYLETGLGKVQEITVSLLEHVHPDISLDSLFKDYKTSLQELTQAHYGTTPEYQLIAAHG 180

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209
           PDH   F V V I G   A     SK+
Sbjct: 181 PDHKKEFEVAVIIDGKRYASAQGKSKK 207


>gi|315104262|gb|EFT76238.1| ribonuclease III [Propionibacterium acnes HL050PA2]
 gi|315106730|gb|EFT78706.1| ribonuclease III [Propionibacterium acnes HL030PA1]
          Length = 265

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 63/218 (28%), Positives = 103/218 (47%), Gaps = 6/218 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
           +  L + +G    +  LL+ ALTH S +       + ERLEFLGD IL + ++  L+  F
Sbjct: 38  FLALLEELGIR-CDPQLLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAF 96

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+L+   +++VS  +  ++AR+L +   I++     +      TSI AD  E+L+
Sbjct: 97  PDKPEGQLAKLRSAVVSTVSLGRLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALL 156

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+ L  G+      V   +     ++ +     D KT LQE+        P Y++   S
Sbjct: 157 GAVELSAGLPNVLRLVHHLFDPLVDEADRSGAGTDWKTVLQEYCAEHGFDAPRYEIVG-S 215

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           GPDH+ R+     + G   A     +K+ AEQ AA   
Sbjct: 216 GPDHNRRYCARANVDGRLHAAYTGHNKKEAEQGAARRA 253


>gi|313836649|gb|EFS74363.1| ribonuclease III [Propionibacterium acnes HL037PA2]
 gi|314928156|gb|EFS91987.1| ribonuclease III [Propionibacterium acnes HL044PA1]
 gi|314972155|gb|EFT16252.1| ribonuclease III [Propionibacterium acnes HL037PA3]
 gi|328907982|gb|EGG27742.1| ribonuclease III [Propionibacterium sp. P08]
          Length = 259

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 65/218 (29%), Positives = 104/218 (47%), Gaps = 6/218 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
           + TL + +G    +  LL+ ALTH S +       + ERLEFLGD IL + ++  L+  F
Sbjct: 32  FLTLLEELGIR-CDPQLLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAF 90

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+L+   +++VS  +  Q+AR L +   +++     +      TSI AD  E+L+
Sbjct: 91  PDKPEGQLAKLRSAVVSTVSLGQLARRLGIGPQVKLGRGEERTGGHDKTSILADTTEALL 150

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+ L  G+  A   V   +     ++ +     D KT LQE+        P Y++   S
Sbjct: 151 GAVELSSGLPDALRLVHHLFDPLVDEADRSGAGTDWKTVLQEYCAEHGFDAPRYEIVG-S 209

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           GPDH+ R+     + G   A     +K+ AEQ AA   
Sbjct: 210 GPDHNRRYCARANVDGRLHAAYTGHNKKEAEQGAARRA 247


>gi|313819677|gb|EFS57391.1| ribonuclease III [Propionibacterium acnes HL046PA2]
 gi|313822217|gb|EFS59931.1| ribonuclease III [Propionibacterium acnes HL036PA1]
 gi|313823550|gb|EFS61264.1| ribonuclease III [Propionibacterium acnes HL036PA2]
 gi|314924611|gb|EFS88442.1| ribonuclease III [Propionibacterium acnes HL036PA3]
 gi|314962025|gb|EFT06126.1| ribonuclease III [Propionibacterium acnes HL002PA2]
 gi|315087196|gb|EFT59172.1| ribonuclease III [Propionibacterium acnes HL002PA3]
          Length = 265

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 64/218 (29%), Positives = 103/218 (47%), Gaps = 6/218 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
           +  L + +G    +  LL+ ALTH S +       + ERLEFLGD IL + ++  L+  F
Sbjct: 38  FLALLEELGIR-CDPQLLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAF 96

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+L+   +++VS  +  Q+AR+L +   I++     +      TSI AD  E+L+
Sbjct: 97  PDKPEGQLAKLRSAVVSTVSLGQLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALL 156

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+ L  G+      V   +     ++ +     D KT LQE+        P Y++   S
Sbjct: 157 GAVELSAGLPDVLRLVHHLFDPLVDEADRSGAGTDWKTVLQEYCAEHGFDAPRYEIVG-S 215

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           GPDH+ R+     + G   A     +K+ AEQ AA   
Sbjct: 216 GPDHNRRYCARANVDGRLHAAYTGHNKKEAEQGAARRA 253


>gi|332970079|gb|EGK09076.1| ribonuclease III [Kingella kingae ATCC 23330]
          Length = 241

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 73/218 (33%), Positives = 115/218 (52%), Gaps = 6/218 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S+L+ ++GY F   + L++ALTH S    + ++YERLEF+GD IL  +I+ +LF  F + 
Sbjct: 11  SSLQTKLGYIFKQPTWLQQALTHRSA---HSQNYERLEFVGDAILDYVITLMLFEAFPNL 67

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG LSV    LV   T ++VAREL L   + +     K       SI AD +E++ AA+
Sbjct: 68  PEGRLSVLRTHLVKEATLAEVARELGLGKALILGVGELKSGGYDRASILADALEAIFAAI 127

Query: 127 YLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
             D  +  A   + + + +R   ++  +  +D KT LQE   A    TP+Y++  ++G  
Sbjct: 128 RFDADLPTAERVIRQLFAERVQQIQVQQPDKDHKTRLQEALQAHRLPTPKYRIERQTGEG 187

Query: 185 HDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221
            D  F V  ++  L         S+RAAEQ  A + L+
Sbjct: 188 SDSHFDVSCDLGELGHITYASGSSRRAAEQECAKQALQ 225


>gi|159036823|ref|YP_001536076.1| ribonuclease III [Salinispora arenicola CNS-205]
 gi|157915658|gb|ABV97085.1| Ribonuclease III [Salinispora arenicola CNS-205]
          Length = 252

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 69/209 (33%), Positives = 105/209 (50%), Gaps = 9/209 (4%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDS 65
            LE   G A  +  LLE+ALTH S ++      + ERLEFLGD +LG++I+T LF++   
Sbjct: 13  HLEAAFGVAL-DPELLERALTHRSYAYENGGLPTNERLEFLGDSVLGVVITTALFHNHPD 71

Query: 66  AKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
             EG+L+    S+V+    ++VAR L    L  ++ +             SI AD +E+L
Sbjct: 72  LPEGQLAKLRASVVNMRALAEVARALGPTGLGPYLLLGKGEETTGGRDKASILADTLEAL 131

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           + A+YL  G++ A T + + +      S       D KT LQE   A+    PEY++   
Sbjct: 132 LGAIYLQCGLDTAATVIHRLFDPLMADSAGRGAALDWKTSLQELTAAQGLGVPEYRIEG- 190

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           +GPDH   FT  V ++G         SK+
Sbjct: 191 TGPDHLKTFTAWVVVAGQRYGGAEGRSKK 219


>gi|193211801|ref|YP_001997754.1| Ribonuclease III [Chlorobaculum parvum NCIB 8327]
 gi|193085278|gb|ACF10554.1| Ribonuclease III [Chlorobaculum parvum NCIB 8327]
          Length = 276

 Score =  228 bits (583), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 71/231 (30%), Positives = 110/231 (47%), Gaps = 8/231 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ------ESYERLEFLGDRILGLL 54
           ++A   S LE   G   + R +   ALTH S+ H +Q      ES +RLEFLGD +L LL
Sbjct: 34  LAAATLSHLEHLTGRPCSRRQIYRIALTHRSLLHDHQGESERPESNQRLEFLGDAVLDLL 93

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
           IS  LF  +  + EG LS     +V+ +  +  AREL L   + +             S 
Sbjct: 94  ISEHLFRLYPESDEGHLSSNRAKIVNRKALAAFARELKLGEHLIIGESANLQKIRTSDSA 153

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVT 172
            AD  E+L+ A+YLD G++ A  F+  +        +  +   + K+ L E++ +     
Sbjct: 154 LADAFEALVGAIYLDQGLDGAKRFIMNHVITMVDLNRIVEAEFNYKSRLIEFSQSHQLPQ 213

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           P Y V    G +H+  F + V  + +   +G    K+ AEQ+AA E +KR 
Sbjct: 214 PVYTVVAEEGAEHEKTFVIEVSCNDIPLGKGTAPRKKDAEQLAAREAMKRL 264


>gi|223937314|ref|ZP_03629220.1| Ribonuclease III [bacterium Ellin514]
 gi|223894099|gb|EEF60554.1| Ribonuclease III [bacterium Ellin514]
          Length = 231

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 68/210 (32%), Positives = 106/210 (50%), Gaps = 5/210 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFN 61
             + L+  +GYAF    LL+ ALTH S++H  +   +  +RLEFLGD +L L+++  L++
Sbjct: 3   DLNNLQTALGYAFRKIELLQLALTHPSVAHEQRTPVQHNQRLEFLGDAVLQLVLTHELYS 62

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F    EG L+     LV+    ++  R L+L + + +S            S  AD  E+
Sbjct: 63  KFPDFGEGPLTKARAKLVNRRALAEQGRALNLGAHLILSRGEEAHGGRLRPSALADTFEA 122

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           L+ A++LDGG E    F+   +      + +     + K ELQE   AK    P+Y V  
Sbjct: 123 LLGAIFLDGGFEAVEKFLLARFHDMLAEISALPALENPKGELQELLQAKSSEAPQYNVVS 182

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            SGPDHD  F  +V+ +G+  A G   SK+
Sbjct: 183 TSGPDHDRVFECIVQHNGVELAHGRGKSKK 212


>gi|114775465|ref|ZP_01451033.1| ribonuclease III [Mariprofundus ferrooxydans PV-1]
 gi|114553576|gb|EAU55957.1| ribonuclease III [Mariprofundus ferrooxydans PV-1]
          Length = 229

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 71/220 (32%), Positives = 106/220 (48%), Gaps = 3/220 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNHFD 64
              L++ IGY F N +LL++ALTH S   S      ERLEFLGD +LGL+++  L   F 
Sbjct: 8   LQQLQQVIGYRFNNPALLKRALTHCSALRSAVSGDLERLEFLGDAVLGLVVAEYLHQSFP 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+LS    +LV  ++   VA +  L++ + V    R +      SI A+ VE++I 
Sbjct: 68  EEPEGQLSRMRANLVCRDSLLVVASDWRLSACLIVGDGERGEYGIKSPSIVANAVEAVIG 127

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           A++ + G + +   V   W+      G+   RDAK+ LQE    K    PEY +  R G 
Sbjct: 128 AVFEESGWDASRRVVLTAWRPMLDDIGRVDPRDAKSRLQELTQGKGWGLPEYVLVDR-GV 186

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            + PRF     +       G    K+ AE  AA +   + 
Sbjct: 187 GYQPRFEATCSVQEKVVGHGSGERKKLAEIAAAEQAWSKL 226


>gi|146318845|ref|YP_001198557.1| dsRNA-specific ribonuclease [Streptococcus suis 05ZYH33]
 gi|145689651|gb|ABP90157.1| dsRNA-specific ribonuclease [Streptococcus suis 05ZYH33]
          Length = 196

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 65/196 (33%), Positives = 90/196 (45%), Gaps = 3/196 (1%)

Query: 31  SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90
           SI+       ERLEFLGD +L L+IS  L+  +    EGE+S   ++ V  E+ +  +R 
Sbjct: 2   SIALLKISHNERLEFLGDAVLQLMISKYLYQKYPDRPEGEMSKLRSTFVREESLAGFSRA 61

Query: 91  LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS 150
                F+R+     K       +I  D  E+ + AL LD G +    F+ K    R L+ 
Sbjct: 62  CGFDRFLRLGKGEEKSGGRNRDTILGDAFEAFLGALLLDKGEKTVEEFIHKVMIPR-LEK 120

Query: 151 GKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
           G F R  D KT LQE       +   Y+V   SGP HD  F V V        +G   SK
Sbjct: 121 GNFERVTDYKTALQEILQVNGEIAISYQVIAESGPAHDKTFEVEVSADQRVIGRGRGRSK 180

Query: 209 RAAEQVAAAEVLKREG 224
           + AEQ AA   ++  G
Sbjct: 181 KLAEQAAAKNAVEARG 196


>gi|332977456|gb|EGK14231.1| ribonuclease III [Psychrobacter sp. 1501(2011)]
          Length = 273

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 117/224 (52%), Gaps = 7/224 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            ++L+K +GY F + SL + ALTH S     + +YERLEFLGD +LG++I   L+  + +
Sbjct: 40  LASLQKVLGYTFKDTSLAKLALTHRSF--DGKINYERLEFLGDALLGMIIGEALYYQYPN 97

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG L+    +LV  E+   VA++L+L+S + +    RK       SI AD VESLI A
Sbjct: 98  QNEGRLTRMRATLVRQESLVIVAQKLNLSSHLILGVGERKGGGRERASILADTVESLIGA 157

Query: 126 LYLDG-GIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           +YLD   ++V    V  ++ +    +   +  +DAK+ LQEW        P+Y++    G
Sbjct: 158 IYLDSQSVDVVKACVLDWFAELINNVNDQRVLKDAKSRLQEWLQGHKYELPKYELLETQG 217

Query: 183 PDHDPRFTV--VVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              +  F V   VE+    P      S+R AEQ  A +++ +  
Sbjct: 218 NAPNQIFIVRCEVEVPHSTPIIESGESRRIAEQKTAEKMINQLN 261


>gi|166365898|ref|YP_001658171.1| ribonuclease III [Microcystis aeruginosa NIES-843]
 gi|166088271|dbj|BAG02979.1| ribonuclease III [Microcystis aeruginosa NIES-843]
          Length = 226

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 71/216 (32%), Positives = 102/216 (47%), Gaps = 9/216 (4%)

Query: 16  AFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            F N  LL +ALTH S  +   E   + ERLEFLGD IL  L+  LL+  + +  E EL+
Sbjct: 6   PFQNALLLTQALTHRSYVNEQSELTENNERLEFLGDAILAFLVGELLYQKYPAMNEAELT 65

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
              ++LV  E  +Q+  E+ L   +R+     KD      ++ AD  E++I A YLD G+
Sbjct: 66  RLRSNLVKEEQLAQLGLEIGLGELMRLGKGAIKDRGRSNPTLLADTFEAIIGAYYLDSGL 125

Query: 133 EVAGTFVDKYWKQRA------LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
                ++   +   A              DAK   Q+WA A F   PEY +   +GP H 
Sbjct: 126 NAVKNYLHGLFIPVASHLVSQQSESSSFIDAKNLFQQWALANFASNPEYAIIDVTGPPHA 185

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             FT  V ++ L    G    K+ A + AA + LKR
Sbjct: 186 REFTAEVRVNNLLYGTGKGKRKQDATKAAAEDALKR 221


>gi|289450366|ref|YP_003474966.1| ribonuclease III [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184913|gb|ADC91338.1| ribonuclease III [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 245

 Score =  228 bits (582), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 66/225 (29%), Positives = 106/225 (47%), Gaps = 7/225 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59
            +    E +IGY+F N+  L +ALTHS+ S+ +     E  ERLEFLGD +LGL +   L
Sbjct: 13  EQICNFENKIGYSFKNKKYLIEALTHSTYSYEHSMYGLECNERLEFLGDLVLGLTVGNHL 72

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F  F +  EG+LS    +LV   T + VA   +L   + +             S  AD  
Sbjct: 73  FKTFPTYPEGKLSKLKAALVCEPTLAIVAHNWELDKVLLLGKGEETSGGRNKPSSLADAT 132

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFG-VTPEYK 176
           E+++ A++ D     A T + +  +    +  +G    D K+ L E    K+      + 
Sbjct: 133 EAVLGAVFCDADFVAAATVILRALEPLIQEAVAGNLVYDYKSALLEKIQTKYHSSQLRFV 192

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +   +GP H P F + + +     A  +  SK+ AEQ+AA + L+
Sbjct: 193 LLDETGPAHSPSFKMGIYLVNDLLATAIGSSKKEAEQIAAKQALQ 237


>gi|307292852|ref|ZP_07572698.1| ribonuclease III [Sphingobium chlorophenolicum L-1]
 gi|306880918|gb|EFN12134.1| ribonuclease III [Sphingobium chlorophenolicum L-1]
          Length = 227

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 89/215 (41%), Positives = 123/215 (57%), Gaps = 3/215 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L   IG    + +   +ALTH S +     +YERLEFLGDRILGLLI+  +++ F +  E
Sbjct: 14  LTALIGRKPKDPAAFTQALTHGSAN---AVNYERLEFLGDRILGLLIAEWVYDRFSTEPE 70

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+LS RFN+LVS ETC++VAR   + + + +    R D  +   ++  DV+E+LI ALYL
Sbjct: 71  GKLSRRFNALVSGETCAEVARSAGVPTHLILGKQARDDGAADSDNVLGDVMEALIGALYL 130

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           +GG++ A T V + W  R        +  K+ LQEWA A     PEY +T RSGP H  +
Sbjct: 131 EGGLKEARTLVRRLWADRVDTQASAPKHPKSALQEWAAANKRKPPEYAMTDRSGPHHALK 190

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           FTV V I G   A     SK+ AE  AA  +L + 
Sbjct: 191 FTVTVSIKGAGEASATGGSKQEAETAAAKALLDKL 225


>gi|119489560|ref|ZP_01622320.1| Ribonuclease III [Lyngbya sp. PCC 8106]
 gi|119454472|gb|EAW35620.1| Ribonuclease III [Lyngbya sp. PCC 8106]
          Length = 395

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 65/234 (27%), Positives = 104/234 (44%), Gaps = 13/234 (5%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLL 59
            R   L + I   F +  LL++ALTH +    +    +   E+LEFLGD +L  L    L
Sbjct: 164 ERLKELLETI--PFQDARLLQRALTHRTYVFEHPTKTEGDNEQLEFLGDSVLNFLAGDYL 221

Query: 60  FNHFDSA-KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           +  +     EGEL+ R +S V     +Q A +L+L  ++++            +S+ ++ 
Sbjct: 222 YEQYSHRRDEGELTRRRSSFVDNSQFAQFAVKLNLGEWMQLGKGEELQGGRTKSSLLSNT 281

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQ------RALKSGKFRRDAKTELQEWAHAKFGVT 172
            E+++ A YLD GIE     +  +++             +   D K  LQ  A       
Sbjct: 282 FEAVMGAYYLDSGIEAVRELIKPFFESVDTATVEDSIPQQTLIDVKGRLQNLAQTNDLPI 341

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           PEY V    G DH   FTV V I+     +G    K+ AE+ AA + L+  G+ 
Sbjct: 342 PEYYVVSEMGKDHAKIFTVEVRINRKFYGRGTGNKKKEAEKQAAIDALQCLGLL 395


>gi|314978880|gb|EFT22974.1| ribonuclease III [Propionibacterium acnes HL072PA2]
 gi|315089369|gb|EFT61345.1| ribonuclease III [Propionibacterium acnes HL072PA1]
          Length = 265

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 63/218 (28%), Positives = 102/218 (46%), Gaps = 6/218 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
           +  L + +G    +  LL+ ALTH S +       + ERLEFLGD IL + ++  L+  F
Sbjct: 38  FLALLEELGIR-CDPQLLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAF 96

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+L+   +++VS  +   +AR+L +   I++     +      TSI AD  E+L+
Sbjct: 97  PDKPEGQLAKLRSAVVSTVSLGLLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALL 156

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+ L  G+      V   +     ++ +     D KT LQE+        P Y++   S
Sbjct: 157 GAVELSAGLPDVLRLVHHLFDPLVDEADRSGAGTDWKTVLQEYCAEHGFDAPRYEIVG-S 215

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           GPDH+ R+     + G   A     +K+ AEQ AA   
Sbjct: 216 GPDHNRRYCARANVDGRLHAAYTGHNKKEAEQGAARRA 253


>gi|126726095|ref|ZP_01741937.1| ribonuclease III [Rhodobacterales bacterium HTCC2150]
 gi|126705299|gb|EBA04390.1| ribonuclease III [Rhodobacterales bacterium HTCC2150]
          Length = 228

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 82/206 (39%), Positives = 117/206 (56%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           A        RIG+ F+   LL +A+TH+SIS + +   +RLEFLGDRILGL+++  L N 
Sbjct: 4   AADLVAFSARIGHEFSKPELLVEAVTHASISSANRSDNQRLEFLGDRILGLVMAEALLNA 63

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
             SA EG L+ RFN+LV  ETC+ VARE+DL + +++             ++  D +E++
Sbjct: 64  DTSANEGTLAPRFNALVRKETCADVAREIDLGAVLKLGRSEMISGGRRKLALLGDAMEAV 123

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           IAA+YLD G E A  F+ + W +R     +  RD K+ LQEWA A+    P YK+  R G
Sbjct: 124 IAAVYLDAGFEAARDFILRSWGERINAVDEDARDPKSSLQEWAQARKMPPPVYKLLRREG 183

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSK 208
            DH P FT+   +     A+    SK
Sbjct: 184 ADHAPMFTIAAILDSGQQAEAKAPSK 209


>gi|78189616|ref|YP_379954.1| ribonuclease III [Chlorobium chlorochromatii CaD3]
 gi|90101617|sp|Q3AQ14|RNC_CHLCH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|78171815|gb|ABB28911.1| RNAse III [Chlorobium chlorochromatii CaD3]
          Length = 248

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 78/229 (34%), Positives = 113/229 (49%), Gaps = 8/229 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSS-----ISHSYQESYERLEFLGDRILGLLI 55
           M     + L+  IG    N  L + ALTH S         + ES +RLEFLGD +LGLLI
Sbjct: 1   MPPETLAYLQTLIGSLDGNARLYQTALTHRSVIGNTALSHHNESNQRLEFLGDAVLGLLI 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S  LF +F ++ EG+LS     +V++++ +  AR + L   + +             S  
Sbjct: 61  SHFLFQNFPASAEGDLSKTRAKIVNSKSLACFARSIGLGEHLLLGESAAHYNIRDSESAL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTP 173
           AD  ESLI A+YLD G++ A  FVDK+       S      ++ K+ L E++ A     P
Sbjct: 121 ADAFESLIGAIYLDKGLDAAYGFVDKHIIHHQSFSAIVASEQNYKSCLIEYSQAHHVAAP 180

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            Y V    G +HD  FTV V  + +    G    K+ AEQ+AA E ++R
Sbjct: 181 VYTVIAEHGAEHDKEFTVEVSCNNIK-GCGTARRKKDAEQLAAKEAMER 228


>gi|305681508|ref|ZP_07404315.1| ribonuclease III [Corynebacterium matruchotii ATCC 14266]
 gi|305659713|gb|EFM49213.1| ribonuclease III [Corynebacterium matruchotii ATCC 14266]
          Length = 259

 Score =  228 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 65/224 (29%), Positives = 108/224 (48%), Gaps = 6/224 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           + + ++ L   +G    +  +L  ALTH S ++      + ERLEFLGD +LGL ++  L
Sbjct: 19  AKVDHAPLLAALGVDLPH-DILTLALTHRSFANENGMLPNNERLEFLGDAVLGLSVAGKL 77

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F  + +  E ++S    S+VS    + +ARE+ L  +I +             SI AD  
Sbjct: 78  FEQYPTRPESDISKMRASIVSRYGLADIAREIGLGQYILLGKGELLTDGRNKDSILADTT 137

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E+L+ A+Y   G ++A   V + +  +    ++    +D KT LQE         P Y+ 
Sbjct: 138 EALLGAIYRIHGFDIARDVVLRLFAHKISHAQATALHQDWKTSLQERLAEYKLPMPVYEA 197

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           T   GP+H+  FT  V + G    +G   +K+ AEQ  A + L+
Sbjct: 198 TSV-GPEHEQVFTASVNVLGRIIGEGTGTNKKLAEQAGAHQALE 240


>gi|71064909|ref|YP_263636.1| ribonuclease III [Psychrobacter arcticus 273-4]
 gi|90101639|sp|Q4FUV6|RNC_PSYA2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|71037894|gb|AAZ18202.1| RNAse III [Psychrobacter arcticus 273-4]
          Length = 265

 Score =  228 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 115/224 (51%), Gaps = 7/224 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           R + L +++GY F + SL + ALTH S     +++YERLEFLGD +LG+++   L++ + 
Sbjct: 33  RLAVLTRKLGYVFNDLSLAKLALTHRSF--DSKKNYERLEFLGDALLGMIVGEALYHRYP 90

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EG L+    +LV  E+   +A+ L+L++ + +    RK       SI AD VESLI 
Sbjct: 91  TQNEGRLTRMRATLVRQESLVIIAQNLELSNQLILGVGERKGGGRNRASILADAVESLIG 150

Query: 125 ALYLDG-GIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           A+YLD   + +    V  ++      +   K  +DAK+ LQEW  +K    P Y++    
Sbjct: 151 AIYLDSQDMNITRECVLSWYGDLIDNVNDQKALKDAKSRLQEWLQSKQFDLPHYELMETR 210

Query: 182 GPDHDPRFTVVVEIS--GLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           G      F V  +++            S+R AEQ AA  ++ + 
Sbjct: 211 GNAPHQLFVVRCQVNIINCPDITESGESRRIAEQKAAELMINQL 254


>gi|289426387|ref|ZP_06428130.1| ribonuclease III [Propionibacterium acnes SK187]
 gi|289428762|ref|ZP_06430445.1| ribonuclease III [Propionibacterium acnes J165]
 gi|295130991|ref|YP_003581654.1| ribonuclease III [Propionibacterium acnes SK137]
 gi|289153115|gb|EFD01833.1| ribonuclease III [Propionibacterium acnes SK187]
 gi|289158160|gb|EFD06380.1| ribonuclease III [Propionibacterium acnes J165]
 gi|291376694|gb|ADE00549.1| ribonuclease III [Propionibacterium acnes SK137]
 gi|332675870|gb|AEE72686.1| ribonuclease III [Propionibacterium acnes 266]
          Length = 246

 Score =  228 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 64/218 (29%), Positives = 103/218 (47%), Gaps = 6/218 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
           +  L + +G    +  LL+ ALTH S +       + ERLEFLGD IL + ++  L+  F
Sbjct: 19  FLALLEELGIR-CDPQLLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAF 77

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+L+   +++VS  +  Q+AR+L +   I++     +      TSI AD  E+L+
Sbjct: 78  PDKPEGQLAKLRSAVVSTVSLGQLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALL 137

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+ L  G+      V   +     ++ +     D KT LQE+        P Y++   S
Sbjct: 138 GAVELSAGLPDVLRLVHHLFDPLVDEADRSGAGTDWKTVLQEYCAEHGFDAPRYEIVG-S 196

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           GPDH+ R+     + G   A     +K+ AEQ AA   
Sbjct: 197 GPDHNRRYCARANVDGRLHAAYTGHNKKEAEQGAARRA 234


>gi|300811711|ref|ZP_07092185.1| ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300497287|gb|EFK32335.1| ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 231

 Score =  228 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 75/231 (32%), Positives = 110/231 (47%), Gaps = 10/231 (4%)

Query: 1   MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55
           M + ++   L+++ G  F +  LLE+A THSS  +        +YE+LEFLGD +L   +
Sbjct: 1   MVSTKFIKMLDEKYGIRFKDVRLLEEAFTHSSYVNENPGKTLGNYEKLEFLGDAVLEFTV 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S  L+ HF    EGEL+   +++V  E  S+VA +      I +     K       ++ 
Sbjct: 61  SDYLYRHFQHLNEGELTRLRSNIVRTEGFSKVALDCGFKEEINLGVGEEKAGGRKRKALL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTP 173
            DV E+   AL+LD GIE    F  +      + +G     RD KT+LQE       VT 
Sbjct: 121 EDVFEAFNGALFLDQGIEAVEKFSSQTVYP-LIAAGYFTPSRDFKTDLQELLQQNGSVTI 179

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           EY+V   S     P F V V + G   A G   +K+ AEQ AA+  L+   
Sbjct: 180 EYRVLNESQQP--PHFEVEVLVDGKKLASGEGRNKKKAEQDAASHALEHLN 228


>gi|183221945|ref|YP_001839941.1| ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
 gi|189912013|ref|YP_001963568.1| ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167776689|gb|ABZ94990.1| Ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167780367|gb|ABZ98665.1| Ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 242

 Score =  228 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 112/223 (50%), Gaps = 7/223 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60
               L+     +F + SLL  A  H S ++   +      ERLEFLGD +LG+L +  L+
Sbjct: 16  SLQELQSITDTSFKDISLLHLAFVHRSFANEDSDRYLSDNERLEFLGDSVLGILAAEYLY 75

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                 KEG L+   + +VSA   +++AR      F+ +     K+      ++QAD  E
Sbjct: 76  KSLPKGKEGILAKLKSKMVSAPAIAKLARFYRFPDFLLLGKGE-KEKGEANLNLQADCFE 134

Query: 121 SLIAALYLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           + + ALYLD G+     F+  +++  ++ ++S +  +D KT LQE+   K+   PEY + 
Sbjct: 135 AFLGALYLDQGLNSCRIFLTPHFQTMEKGVESAEETKDYKTILQEYCQKKWKKLPEYILL 194

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              GPDHD  F+V V       + G   +KR AEQ+AA   L+
Sbjct: 195 KEEGPDHDKDFSVSVSCENYFQSNGDGKNKRRAEQMAAKAALR 237


>gi|161621795|ref|YP_056158.2| ribonuclease III [Propionibacterium acnes KPA171202]
          Length = 246

 Score =  228 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 63/218 (28%), Positives = 103/218 (47%), Gaps = 6/218 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
           +  L + +G    +  LL+ ALTH S +       + ERLEFLGD IL + ++  L+  F
Sbjct: 19  FLALLEELGIR-CDPQLLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAF 77

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+L+   +++VS  +  ++AR+L +   I++     +      TSI AD  E+L+
Sbjct: 78  PDKPEGQLAKLRSAVVSTVSLGRLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALL 137

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+ L  G+      V   +     ++ +     D KT LQE+        P Y++   S
Sbjct: 138 GAVELSAGLPNVLRLVHHLFDPLVDEADRSGAGTDWKTVLQEYCAEHGFDAPRYEIVG-S 196

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           GPDH+ R+     + G   A     +K+ AEQ AA   
Sbjct: 197 GPDHNRRYCARANVDGRLHAAYTGHNKKEAEQGAARRA 234


>gi|256397117|ref|YP_003118681.1| ribonuclease III [Catenulispora acidiphila DSM 44928]
 gi|256363343|gb|ACU76840.1| ribonuclease III [Catenulispora acidiphila DSM 44928]
          Length = 276

 Score =  228 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 73/235 (31%), Positives = 112/235 (47%), Gaps = 23/235 (9%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
             L  R+G    +  L+++ALTH S ++      + ERLEFLGD +LGL+++  L+    
Sbjct: 19  EDLIARLGL-PVDARLIDRALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYTTHS 77

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+L+   +++V+++  ++VAR L L  ++++             SI AD +E+LI 
Sbjct: 78  ELPEGQLAKLRSAVVNSKALAEVARGLRLGDYVKLGRGEETTGGRDKASILADTLEALIG 137

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           ++YLD GIEVA   V + +      S       D KT LQE         P+Y+VT  +G
Sbjct: 138 SVYLDHGIEVAFDLVRRLFGPLIATSATLGAGLDWKTSLQELTAVAGIGVPDYRVT-ETG 196

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRA-----------------AEQVAAAEVL 220
           PDHD  F     + G     G   SK+                  AE +AA  VL
Sbjct: 197 PDHDKFFEADACVGGTVYGHGSGRSKKEAEQQAAEEAWRTIRETHAEALAAKGVL 251


>gi|225021993|ref|ZP_03711185.1| hypothetical protein CORMATOL_02025 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945279|gb|EEG26488.1| hypothetical protein CORMATOL_02025 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 259

 Score =  228 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 65/224 (29%), Positives = 108/224 (48%), Gaps = 6/224 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           + + ++ L   +G    +  +L  ALTH S ++      + ERLEFLGD +LGL ++  L
Sbjct: 19  AKVDHAPLLAALGVDLPH-DILTLALTHRSFANENGMLPNNERLEFLGDAVLGLSVAGKL 77

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F  + +  E ++S    S+VS    + +ARE+ L  +I +             SI AD  
Sbjct: 78  FEQYPTRPESDISKMRASIVSRYGLADIAREIGLGQYILLGKGELLTDGRNKDSILADTT 137

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E+L+ A+Y   G ++A   V + +  +    ++    +D KT LQE         P Y+ 
Sbjct: 138 EALLGAIYRIHGFDIARDVVLRLFAHKISHAQATALHQDWKTSLQERLAEYKLPMPVYEA 197

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           T   GP+H+  FT  V + G    +G   +K+ AEQ  A + L+
Sbjct: 198 TSV-GPEHEQVFTASVNVLGRIIGEGTGTNKKLAEQAGAHQALE 240


>gi|15892080|ref|NP_359794.1| ribonuclease III [Rickettsia conorii str. Malish 7]
 gi|22654066|sp|Q92JB0|RNC_RICCN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|15619202|gb|AAL02695.1| ribonuclease III [Rickettsia conorii str. Malish 7]
          Length = 227

 Score =  228 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 113/224 (50%), Gaps = 5/224 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59
             +  LEK + Y+F N+ LL +AL+H S+   ++    + YERLEFLGD +L L+I+ +L
Sbjct: 2   ESFEKLEKLLSYSFKNKELLIEALSHPSLRQHHEYKDDKDYERLEFLGDAVLNLVITEIL 61

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F +F +  EG L+   + LV  ET   V  +L L ++I ++            +   +  
Sbjct: 62  FRNFANYNEGNLAKIRSYLVCKETICMVGAKLTLKNYIIMTHGEEVAGGRDNLNNIENAT 121

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E+LIAA+YLD  IE     ++  W +          D KT LQEWA A     P Y++  
Sbjct: 122 EALIAAIYLDSNIETTHDIIENLWAEFIKVQNLTDYDPKTALQEWAQASDHHLPIYRLIK 181

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           R G  H   FTV+V++       G   + + AE+ AA  +L R 
Sbjct: 182 REGASHSSTFTVLVKVKDYEQ-TGTGHTIKEAEKNAARSLLHRL 224


>gi|327538797|gb|EGF25444.1| ribonuclease III [Rhodopirellula baltica WH47]
          Length = 297

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 72/218 (33%), Positives = 117/218 (53%), Gaps = 3/218 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +    ++ +GY F +  LL  ALTH+S +     S ERLEFLGD +LGL +   LFN + 
Sbjct: 64  KIERCQEILGYDFRDLDLLRSALTHASGASHRLASNERLEFLGDSVLGLTVCEWLFNEYP 123

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+L+   +++VS  +C +VA +L L   + V   + ++  S+  S+ +DV E++IA
Sbjct: 124 EYSEGDLTKIKSAVVSRRSCGKVACKLGLDQCLIVGRGVTRNR-SYPKSLVSDVFEAVIA 182

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           ALY+DGG E+    +  +  +    +   +   + K+ LQ++A  +   TP YK+   +G
Sbjct: 183 ALYIDGGPEIVRDRLKLWLAEEVNLAVDTQGSGNHKSVLQQFAQRELSATPVYKLIRETG 242

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           PDH   F +   +     A     +K+ AEQ AAA  L
Sbjct: 243 PDHRKMFLMGAMVDDRRFAPAWGNNKKDAEQRAAANAL 280


>gi|284006739|emb|CBA71996.1| ribonuclease III [Arsenophonus nasoniae]
          Length = 204

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 65/190 (34%), Positives = 100/190 (52%), Gaps = 6/190 (3%)

Query: 24  EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83
           ++ALTH S S  +    ERLEFLGD IL  +I+  L++ F    EG++S    +LV   T
Sbjct: 2   KQALTHRSASSGH---NERLEFLGDSILSFVIANDLYHRFPKVDEGDMSRMRATLVRGNT 58

Query: 84  CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143
            +++ARE DL   +R+     K       SI AD +E+LI +++LD  I+     V  ++
Sbjct: 59  LAELAREFDLGECLRLGPGELKSGGFRRESILADTIEALIGSIFLDSDIQTTERIVLAWY 118

Query: 144 KQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG-LAP 200
             R ++   G  ++D KT LQE+   +    P Y V    G  HD  FT+  ++SG   P
Sbjct: 119 DTRLIEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVRVRGEAHDQEFTIHCQVSGIKEP 178

Query: 201 AQGMDCSKRA 210
            +G+  S+R 
Sbjct: 179 VEGVGSSRRK 188


>gi|239814409|ref|YP_002943319.1| ribonuclease III [Variovorax paradoxus S110]
 gi|259646554|sp|C5CSF5|RNC_VARPS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|239800986|gb|ACS18053.1| ribonuclease III [Variovorax paradoxus S110]
          Length = 228

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 115/221 (52%), Gaps = 6/221 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            + L++R+ ++F++  LL+ ALTH S S    +  ERLEFLGD +L L +S LL+    +
Sbjct: 5   LTALQERLKHSFSDTRLLQLALTHRSFS---ADHNERLEFLGDSVLNLAVSHLLYTRLSA 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    +LV  +T  ++A EL L+  +R+     +       SI AD +E+LI A
Sbjct: 62  LPEGDLSRVRANLVKQDTLHRLALELQLSPLLRLGEGEARSGGPNRPSILADALEALIGA 121

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YLD G   A   V + ++   +        +D KTELQEW        P Y+V    G 
Sbjct: 122 VYLDAGFSAAEALVRRLYESVEINPRMDAVAKDPKTELQEWLQGHKMKLPVYRVAATLGA 181

Query: 184 DHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223
            H   F V  E+  L    +G+  S+RA EQ AAA +L R 
Sbjct: 182 AHKQTFDVECEVPELGLRERGIGGSRRAGEQAAAAAMLIRL 222


>gi|307329834|ref|ZP_07608989.1| ribonuclease III [Streptomyces violaceusniger Tu 4113]
 gi|306884563|gb|EFN15594.1| ribonuclease III [Streptomyces violaceusniger Tu 4113]
          Length = 278

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 72/212 (33%), Positives = 112/212 (52%), Gaps = 6/212 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           +A  ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L
Sbjct: 19  TASSHTILEGRLGYQLES-ALLVRALTHRSFAYENGGLPTNERLEFLGDSVLGLVVTDTL 77

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +       EG+L+    ++V++   ++V R LDL +FIR+             SI AD +
Sbjct: 78  YRIHPDLPEGQLAKLRAAVVNSRALAEVGRGLDLGAFIRLGRGEEGTGGRDKASILADTL 137

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD G++ A   V + +     KS       D KT LQE    +    PEY +
Sbjct: 138 EAVIGAVYLDQGLDAAAELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEY-L 196

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
              +GPDH+  FT    + G+A   G   SK+
Sbjct: 197 VSETGPDHEKTFTAAARVGGVAYGTGTGRSKK 228


>gi|73541939|ref|YP_296459.1| ribonuclease III [Ralstonia eutropha JMP134]
 gi|90101640|sp|Q46Z18|RNC_RALEJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|72119352|gb|AAZ61615.1| RNAse III [Ralstonia eutropha JMP134]
          Length = 256

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 66/209 (31%), Positives = 102/209 (48%), Gaps = 6/209 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +    L++R+GY F+   LL++ALTH S      +  ERLEFLGD +L   ++ +LF  F
Sbjct: 1   MNLDALQQRLGYRFSKPELLQQALTHRS---HSAQHNERLEFLGDSVLNCAVADMLFGMF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  +   ++A+ L L+  +R+     K       SI AD +E+++
Sbjct: 58  GKLDEGDLSRVRANLVKQQALYEIAQMLQLSEVLRLGEGELKSGGFRRPSILADALEAIV 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LD G E A T + K +      +      +DAKT LQE+        P+Y V    
Sbjct: 118 GAVFLDAGFEAARTLIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYNVIATH 177

Query: 182 GPDHDPRFTVVVEISGLAPAQ-GMDCSKR 209
           G  H  +F V   +  L     G   S+R
Sbjct: 178 GAAHSQQFEVECMVPKLEVRVFGTGASRR 206


>gi|288576266|ref|ZP_05978490.2| ribonuclease III [Neisseria mucosa ATCC 25996]
 gi|288565937|gb|EFC87497.1| ribonuclease III [Neisseria mucosa ATCC 25996]
          Length = 271

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 64/219 (29%), Positives = 114/219 (52%), Gaps = 6/219 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++ ++GY F + +LL++ALTH S    + ++ ER EF+GD IL   ++ +LF+ F  
Sbjct: 43  HTAIQNKLGYHFKDTALLQQALTHRSY---HAKNNERFEFVGDSILNYTVAKMLFDAFPK 99

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 100 LTEGELSRLRASLVNEGVLAEIALEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 159

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +  D     A   V   + +R  ++      +D KT LQE   A+    P+Y++  + G 
Sbjct: 160 VSFDADFAEAEKVVRHLFAERVKRADFKTQGKDNKTALQEALQARRLALPKYRIEEQIGH 219

Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221
            +D  F +  ++  L    +    S++ AEQ AA E L+
Sbjct: 220 ANDSMFLISCDLGELGFICKAQGSSRKVAEQQAAKEALQ 258


>gi|325849059|ref|ZP_08170551.1| ribonuclease III [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325480304|gb|EGC83367.1| ribonuclease III [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 238

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 67/219 (30%), Positives = 114/219 (52%), Gaps = 7/219 (3%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           IGY F N++L++ ALTHSS  +  ++    S ERLEFLGD IL L++S  L+ +  S  E
Sbjct: 18  IGYIFKNKNLIDVALTHSSYINESKDKNRSSNERLEFLGDSILDLVVSEELYKNHKSYPE 77

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+L+   + +V   + S+ + + +L+S++               S++AD  E+  AA+YL
Sbjct: 78  GKLTKIRSRIVCTSSFSKASEKFNLSSYLLFGKGEISHNGREKKSVKADTFEAFCAAIYL 137

Query: 129 DGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           D G      F+ + +    +  L++     D KT+LQE+ +       +YK+    GP+H
Sbjct: 138 DAGYVFLKNFLMENYYQTVKELLENDLLFIDYKTKLQEYFNKTNRTILKYKLAKEEGPEH 197

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +  F + V       + G   +K+ AEQ+AA +  K+  
Sbjct: 198 NKTFYMDVYAKNKKLSTGKGKNKKEAEQMAAMKAYKKLN 236


>gi|241761668|ref|ZP_04759755.1| Ribonuclease III [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|260754033|ref|YP_003226926.1| ribonuclease III [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|283856457|ref|YP_163110.2| ribonuclease III [Zymomonas mobilis subsp. mobilis ZM4]
 gi|292495068|sp|Q9Z5U2|RNC_ZYMMO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|241373976|gb|EER63509.1| Ribonuclease III [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|258553396|gb|ACV76342.1| ribonuclease III [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|283775461|gb|AAV89999.2| Ribonuclease III [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 246

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 78/203 (38%), Positives = 119/203 (58%), Gaps = 3/203 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            S +EK +G+   + +L  +A+TH S  +S    Y+RLEFLGDR+LGL+I+  L++ F  
Sbjct: 30  ISWIEKNLGHRPKDPALFLRAMTHPSHGNS---DYQRLEFLGDRVLGLVIANWLYDLFPR 86

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS R NSLVS  +C+ +AR + L  ++R+    R D  +   ++  DV+E++I A
Sbjct: 87  EPEGKLSRRLNSLVSGASCASIARIVGLPQWLRLGKQARDDGAAASDNVLGDVMEAMIGA 146

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           ++L+ GIE AG  + KYW           +  K+ LQEWA A     P Y++  R+GP H
Sbjct: 147 IFLESGIEAAGKLIHKYWAPLVTGQESAPKHPKSALQEWAAAHNRRPPVYEIVSRTGPQH 206

Query: 186 DPRFTVVVEISGLAPAQGMDCSK 208
           +P FT+ V I+G+  A     SK
Sbjct: 207 NPCFTIQVSIAGVGEASAEGSSK 229


>gi|171463192|ref|YP_001797305.1| Ribonuclease III [Polynucleobacter necessarius subsp. necessarius
           STIR1]
 gi|171192730|gb|ACB43691.1| Ribonuclease III [Polynucleobacter necessarius subsp. necessarius
           STIR1]
          Length = 263

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 69/215 (32%), Positives = 109/215 (50%), Gaps = 9/215 (4%)

Query: 1   MSA---LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIST 57
           M+A   +    L++R+GY F    LL +ALTH S     +++ ERLEFLGD IL  +++ 
Sbjct: 1   MNARAIIETGPLQERLGYTFKKPELLNQALTHRS---HSKKNNERLEFLGDSILNCVVAE 57

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
           +L+  +    EG+LS    +LV  +   ++A+ L L+ ++R+     K       SI AD
Sbjct: 58  MLYERYSDLDEGDLSRVRANLVKQQALYEIAQTLSLSDYLRLGEGELKSGGFRRPSILAD 117

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
            +E++  A++LDGG E A T + K +      +      +D KT LQE   +     P Y
Sbjct: 118 TLEAVTGAIFLDGGFEAAKTSLRKLYSIILAHVDPKTLGKDDKTLLQECLQSYQLPLPAY 177

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKR 209
            VT  +G  H+ +F V   I     A +G   S+R
Sbjct: 178 NVTGTTGAAHNQQFEVECLIPSHKVAVKGEGASRR 212


>gi|224825223|ref|ZP_03698329.1| Ribonuclease III [Lutiella nitroferrum 2002]
 gi|224602894|gb|EEG09071.1| Ribonuclease III [Lutiella nitroferrum 2002]
          Length = 238

 Score =  227 bits (579), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 67/211 (31%), Positives = 105/211 (49%), Gaps = 6/211 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           + +++  L   +GY F    LL +ALTH S       + ER EF+GD IL   ++ +LF+
Sbjct: 6   TEVKFGRLSVALGYRFTRPELLRQALTHRSFGSP---NNERFEFIGDSILNYTVARMLFD 62

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F S  EGELS    +LV+  + +++A  L L  ++ +     K       SI AD +E+
Sbjct: 63  RFPSLSEGELSRLRANLVNQSSLAEIALGLGLGDYLYLGEGELKSGGFNRPSILADALEA 122

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
             AA+  D     A   V + ++QR  A+   K  +DAKT LQE   A+    P+Y++  
Sbjct: 123 TFAAVSFDTDFAAAENVVRRLYEQRVAAIDPTKHAKDAKTRLQEALQARKLALPKYRILS 182

Query: 180 RSGPDHDPRFTVVVEISGL-APAQGMDCSKR 209
           +SG  H+  F V  ++  L     G   S+R
Sbjct: 183 QSGEAHEQWFKVECDLGELAVIVTGEGGSRR 213


>gi|312115946|ref|YP_004013542.1| ribonuclease III [Rhodomicrobium vannielii ATCC 17100]
 gi|311221075|gb|ADP72443.1| ribonuclease III [Rhodomicrobium vannielii ATCC 17100]
          Length = 236

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 87/204 (42%), Positives = 115/204 (56%), Gaps = 1/204 (0%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           R   LE  +GY F  R LL +ALTHSS  S       ERLEFLGDR+LGL I+ LLF  F
Sbjct: 7   RVEELEASLGYKFQERGLLAEALTHSSARSEKGGRDNERLEFLGDRVLGLSIAALLFERF 66

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             A+E EL+  FN+LV   TC++VA +L+L   + ++    +        I AD VE+L+
Sbjct: 67  PKAREVELARHFNALVCKTTCAEVALKLELGPHLVMAPSEARSGGRKKDVILADAVEALL 126

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            A+ +DGG   A T V ++W+     S     DAKT LQE+A ++    P+Y    RSG 
Sbjct: 127 GAISVDGGFAAAETVVHRHWEPFIASSEPPAPDAKTALQEFAQSQKRGLPDYHEVERSGA 186

Query: 184 DHDPRFTVVVEISGLAPAQGMDCS 207
           DH P FTV V + GL P +G   S
Sbjct: 187 DHAPNFTVEVRVQGLKPERGTGSS 210


>gi|254514114|ref|ZP_05126175.1| ribonuclease III [gamma proteobacterium NOR5-3]
 gi|219676357|gb|EED32722.1| ribonuclease III [gamma proteobacterium NOR5-3]
          Length = 224

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 80/212 (37%), Positives = 115/212 (54%), Gaps = 8/212 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M A ++  LE++ G    N SLL +AL+H S+      + ERLEFLGD +LG ++S  L+
Sbjct: 1   MDAQQW--LERQFGCRLQNGSLLTQALSHRSVG---SRNNERLEFLGDSVLGFVVSEELY 55

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EG+LS    SLV     + VARELDL   +R+ +           SI AD +E
Sbjct: 56  RRFPDADEGQLSRLRVSLVKGSALAAVARELDLGDQLRLGAGEIHGGGRRRDSILADTLE 115

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +L+ A+ LD GIE     + + ++ R  ALK  + R+D KT LQE+   +    P+Y + 
Sbjct: 116 ALLGAIVLDLGIEACRAAISRVFQSRFDALKLEQARKDPKTRLQEFLQGRGRQLPDYVLC 175

Query: 179 FRSGPDHDPRFTVVVEI-SGLAPAQGMDCSKR 209
             +G DH   FTV  E+  G   AQG+  S+R
Sbjct: 176 DAAGEDHAKIFTVACELSDGDEVAQGVGESRR 207


>gi|83652594|gb|ABC36657.1| ribonuclease III, putative [Burkholderia thailandensis E264]
          Length = 487

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 101/206 (49%), Gaps = 6/206 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           ++  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  
Sbjct: 18  SMPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQR 74

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++
Sbjct: 75  FSKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAI 134

Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           I A++LDGG E A   + + +      +      +DAKT LQE+        P Y V   
Sbjct: 135 IGAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVAT 194

Query: 181 SGPDHDPRFTVVVEISGLAP-AQGMD 205
            G  H+ +F V   +  L     G  
Sbjct: 195 HGAAHNQQFEVECTVPKLDIKVSGSG 220


>gi|254423554|ref|ZP_05037272.1| ribonuclease III [Synechococcus sp. PCC 7335]
 gi|196191043|gb|EDX86007.1| ribonuclease III [Synechococcus sp. PCC 7335]
          Length = 228

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 66/212 (31%), Positives = 102/212 (48%), Gaps = 6/212 (2%)

Query: 16  AFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            F N +L ++A+TH S ++      E  ERLEFLGD IL  L +  LF  F    EGEL+
Sbjct: 15  TFTNSALWQQAMTHKSFANEQPTATEHNERLEFLGDAILTFLSAEYLFVRFPKQSEGELT 74

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG-- 130
              ++LV      + A+ L L  ++R+     K+       +     E+LI A +LD   
Sbjct: 75  PMRSALVDQSQLHRFAQGLKLDEYLRLGKGAEKEGARKSARLLCSAFEALIGAYFLDQEH 134

Query: 131 GIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
            +++   ++   ++           +D KT LQEWA    G  PEY      GPDH   F
Sbjct: 135 NLQLVKDYITPIFESAIAPDVEAGVKDDKTRLQEWAQKTTGSVPEYVEISTLGPDHAKEF 194

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            + V+I G +  +G   SK+ A+++AA   L+
Sbjct: 195 VIEVQIGGKSYGRGSGRSKQKAQKLAARSTLE 226


>gi|16125807|ref|NP_420371.1| ribonuclease III [Caulobacter crescentus CB15]
 gi|221234567|ref|YP_002517003.1| ribonuclease III [Caulobacter crescentus NA1000]
 gi|22654073|sp|Q9A805|RNC_CAUCR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|254807242|sp|B8H627|RNC_CAUCN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|13422947|gb|AAK23539.1| ribonuclease III [Caulobacter crescentus CB15]
 gi|220963739|gb|ACL95095.1| ribonuclease III [Caulobacter crescentus NA1000]
          Length = 231

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 91/204 (44%), Positives = 125/204 (61%), Gaps = 3/204 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE+RIG+ F +R LLE+ALTH+S+    ++    E LEF+GDR+LGLL +  L   F  A
Sbjct: 11  LERRIGHRFEDRELLERALTHASVGDGAKKVRDNEVLEFIGDRVLGLLAAEALAQRFPKA 70

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           KEGEL+ R N+LVS ETC++VAR+ +L   +R+S+   K       SI A   E+L+AAL
Sbjct: 71  KEGELAPRLNALVSRETCARVARKAELGPALRLSASSSKIGGRETDSILAGATEALMAAL 130

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           Y DGG+E A       W     ++G+   RD KT LQEWA  +    P Y+V  R+GPDH
Sbjct: 131 YQDGGLEAARKVFLDLWNDEFDRAGEGRPRDPKTALQEWAQGQGRPLPTYRVLDRTGPDH 190

Query: 186 DPRFTVVVEISGLAPAQGMDCSKR 209
            P FTV V ++G+ PA     S++
Sbjct: 191 APVFTVEVSVTGVDPAIAKGKSRQ 214


>gi|254490771|ref|ZP_05103954.1| ribonuclease III [Methylophaga thiooxidans DMS010]
 gi|224463943|gb|EEF80209.1| ribonuclease III [Methylophaga thiooxydans DMS010]
          Length = 227

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 108/223 (48%), Gaps = 6/223 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M   R   L K++   F    LL +ALTH S      ++ ERLE+LGD IL  +I+  LF
Sbjct: 1   MITQRQKALCKQLEITFKKTDLLLQALTHRSAD---PKNNERLEYLGDAILSFVIAEELF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N F   KEG+LS    SLV  ET +++AREL L   + +     K       SI AD VE
Sbjct: 58  NRFPQVKEGKLSRLRASLVKGETLAELARELKLGDVLILGPGELKSGGFRRESILADAVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +++ ALYLDGG+E     + + +++R   +   +  +D KT LQE   ++    P Y V 
Sbjct: 118 AILGALYLDGGLESVKALILRLYQERLDNIDVTETVKDPKTRLQELLQSRKQPLPIYSVK 177

Query: 179 FRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVL 220
                   P F    +++ L         S R AE+ AA   L
Sbjct: 178 EVKTDKKHPAFEASCQVTLLDKVVVAQGSSHRKAEKKAAERAL 220


>gi|154249761|ref|YP_001410586.1| ribonuclease III [Fervidobacterium nodosum Rt17-B1]
 gi|154153697|gb|ABS60929.1| Ribonuclease III [Fervidobacterium nodosum Rt17-B1]
          Length = 239

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 116/224 (51%), Gaps = 11/224 (4%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE------SYERLEFLGDRILGLLISTLL 59
              L++R+GY F N+ LL  AL HSS ++   +        ERLEFLGD ++ L++  +L
Sbjct: 12  LEELQRRLGYTFKNQMLLFNALCHSSYAYELNQIGRDVQDNERLEFLGDAVVELVVCDIL 71

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           + ++  + EG+++    ++ S E  +++A E++L  +I +     K      +SI AD  
Sbjct: 72  YRNYPDSSEGDMAKVKGAVASEEVLTELANEIELGKYIFLGKGEEKTGGRKRSSILADAF 131

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E+L AA+YLDG +E       +  K+      +G+   D KT LQE    +F   PEYK 
Sbjct: 132 EALCAAIYLDGNLESVVKVFGEKLKREIEIFYTGQRIFDYKTALQEITQERFKELPEYKT 191

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
                 D + +F V + I G   + G+  SK+ AE+ AA +  +
Sbjct: 192 VK---NDENGKFLVELYIQGKKISMGIGNSKKDAEKDAAKKAYE 232


>gi|149926460|ref|ZP_01914721.1| ribonuclease III [Limnobacter sp. MED105]
 gi|149824823|gb|EDM84037.1| ribonuclease III [Limnobacter sp. MED105]
          Length = 226

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 72/209 (34%), Positives = 101/209 (48%), Gaps = 6/209 (2%)

Query: 15  YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
           Y+F +++LL  ALTH S S  +    ERLEFLGD +L    S LLF       EG++S  
Sbjct: 3   YSFKDQALLRLALTHRSYSSHH---NERLEFLGDSVLNCAASILLFETHPDMDEGKMSRV 59

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
            + LV  +  + V R L L  ++ + +   +   +   SI AD +E+L  A+ LD G E 
Sbjct: 60  RSHLVKQDCLAMVGRNLLLDQYLFLGAGELRSAKTIKDSIVADALEALFGAILLDSGFEA 119

Query: 135 AGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
           A   V +  K   L++      +D KT LQE    K    P Y+V    G    P F+V 
Sbjct: 120 ARDCVVRLLKPVMLETPIESMGKDPKTRLQELLQGKRMKLPMYRVLVEGGTSASPEFSVE 179

Query: 193 VEISGLAPAQ-GMDCSKRAAEQVAAAEVL 220
             +  L   + G   S+R AEQ AA  VL
Sbjct: 180 CAVEDLEITKVGQGHSRRVAEQHAAQAVL 208


>gi|256830196|ref|YP_003158924.1| ribonuclease III [Desulfomicrobium baculatum DSM 4028]
 gi|256579372|gb|ACU90508.1| ribonuclease III [Desulfomicrobium baculatum DSM 4028]
          Length = 242

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 72/221 (32%), Positives = 111/221 (50%), Gaps = 3/221 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNHFD 64
              L+  I Y F    LL +ALTHSS ++ +     ERLEFLGD +L L +S  LF  F 
Sbjct: 10  LQALQNEIHYEFKQVKLLIQALTHSSHANEHGCPHNERLEFLGDAVLELAVSQELFRKFP 69

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             +EG L+   ++LVS    +Q AR + L + + +             S+ +D +E+++ 
Sbjct: 70  EVQEGHLTKMRSALVSEGALAQAARRIHLGACLLLGRGEDVQGGREKNSVLSDALEAVLG 129

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YLDGG+E A T V+  +  +     +    RD K+ LQE     +   P Y +    G
Sbjct: 130 AVYLDGGLERAITCVNFLYAGQWPTPPETFRPRDFKSLLQEATQRIWKARPSYALRESHG 189

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           P+H  ++TVVV +      +  + S R AEQ AA + L + 
Sbjct: 190 PEHAKQYTVVVTMPDKTEVECEERSMRKAEQGAAEQALVQL 230


>gi|314954310|gb|EFS98716.1| ribonuclease III [Propionibacterium acnes HL027PA1]
          Length = 265

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 63/218 (28%), Positives = 102/218 (46%), Gaps = 6/218 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
           +  L + +G    +  LL+ ALTH S +       + ERLEFLGD IL + ++  L+  F
Sbjct: 38  FLALLEELGIR-CDPQLLDLALTHRSYAFENGGIPTNERLEFLGDAILEVGVTDYLYRAF 96

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+L+   +++VS  +  Q+AR+L +   I++     +      TSI AD  E+L+
Sbjct: 97  PDKPEGQLAKLRSAVVSTVSLGQLARQLGIGPRIKLGKGEERTGGHDKTSILADTTEALL 156

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+ L  G+      V   +     ++ +     D KT LQE+        P Y++    
Sbjct: 157 GAVELSAGLPDVLRLVHHLFDPLVDEADRSGAGTDWKTVLQEYCAEHGFDAPRYEIVG-F 215

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           GPDH+ R+     + G   A     +K+ AEQ AA   
Sbjct: 216 GPDHNRRYCARANVDGRLHAAYTGHNKKEAEQGAARRA 253


>gi|78065718|ref|YP_368487.1| ribonuclease III [Burkholderia sp. 383]
 gi|77966463|gb|ABB07843.1| RNAse III [Burkholderia sp. 383]
          Length = 408

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I
Sbjct: 58  SKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG E A   + + +      +      +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202


>gi|312984414|ref|ZP_07791749.1| ribonuclease III [Lactobacillus crispatus CTV-05]
 gi|310894189|gb|EFQ43276.1| ribonuclease III [Lactobacillus crispatus CTV-05]
          Length = 229

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 73/230 (31%), Positives = 109/230 (47%), Gaps = 10/230 (4%)

Query: 1   MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLI 55
           M + ++   L+      F N  LLE+A THSS S+ +       YE+LEFLGD +L L +
Sbjct: 1   MVSTKFLKKLKDDYNIEFNNEKLLEEAFTHSSYSNEHPNDGIRDYEKLEFLGDAVLELAV 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S  ++ H+    EGEL+   +++V  E  S+ A E      I + +   K       ++ 
Sbjct: 61  SNYVYLHYPKLNEGELTRLRSNIVRTEGFSEFAIECGFQDEIHLGNGEEKAGARHRKTLL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPE 174
            DV E+   AL+LD G+     F+         K      RD KT+LQE       V  E
Sbjct: 121 EDVFEAFNGALFLDQGMPAVEHFLHLTVYPLIDKGEFDDSRDYKTDLQEVLQQDGPVNIE 180

Query: 175 YKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           Y V   S  P H   F V ++I+G   ++G   +K+AAEQ AA   L++ 
Sbjct: 181 YTVISESQLPSH---FVVELKINGKVESKGEGHNKKAAEQQAAKVALQKL 227


>gi|292571710|gb|ADE29625.1| Ribonuclease III [Rickettsia prowazekii Rp22]
          Length = 225

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 115/224 (51%), Gaps = 5/224 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLL 59
             +  LE  +GY+F N+ LL +AL+H S+     + Y + YERLEFLGD +L LLI+ +L
Sbjct: 2   ESFEKLETLLGYSFKNKELLIEALSHPSLRQYHEYKYDKDYERLEFLGDAVLNLLITEIL 61

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F +F++ KEG L+   + LV  ET   V  +L L  +I ++            +   +  
Sbjct: 62  FKNFENYKEGNLAKIRSYLVCKETICIVGTKLALKDYIIMTHGEEVAGGRDNPNNIENAT 121

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E+LIAA+YLD  IE+    ++K W +          D KT LQEWA A     P Y++  
Sbjct: 122 EALIAAIYLDSNIEITHNIIEKLWAEFMKVQNFTDYDPKTALQEWAQANSHHLPIYRLIK 181

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           R G  H   FTV+V++           S + AE+ AA  +L R 
Sbjct: 182 REGAAHSSIFTVLVKVKDYEQ-TCTGYSIKEAEKKAARSLLHRL 224


>gi|32473407|ref|NP_866401.1| ribonuclease III [Rhodopirellula baltica SH 1]
 gi|32398087|emb|CAD78182.1| ribonuclease III [Rhodopirellula baltica SH 1]
          Length = 297

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 72/218 (33%), Positives = 117/218 (53%), Gaps = 3/218 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +    ++ +GY F +  LL  ALTH+S +     S ERLEFLGD +LGL +   LFN + 
Sbjct: 64  KIERCQEILGYDFRDLDLLRSALTHASGASHRLASNERLEFLGDSVLGLTVCEWLFNEYP 123

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+L+   +++VS  +C +VA +L L   + V   + ++  S+  S+ +DV E++IA
Sbjct: 124 EYSEGDLTKIKSAVVSRRSCGKVACKLGLDQCLIVGRGVTRNR-SYPKSLVSDVFEAVIA 182

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           ALY+DGG E+    +  +  +    +   +   + K+ LQ++A  +   TP YK+   +G
Sbjct: 183 ALYIDGGPEIVRDRLKLWLAEEVNLAVDTQGSGNHKSVLQQFAQRELSATPVYKLIRETG 242

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           PDH   F +   +     A     +K+ AEQ AAA  L
Sbjct: 243 PDHRKMFLMGAMVDDRRFAPAWGNNKKDAEQRAAANAL 280


>gi|288923504|ref|ZP_06417623.1| ribonuclease III [Frankia sp. EUN1f]
 gi|288345162|gb|EFC79572.1| ribonuclease III [Frankia sp. EUN1f]
          Length = 281

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 69/214 (32%), Positives = 108/214 (50%), Gaps = 11/214 (5%)

Query: 19  NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           +  LL++ALTH S ++      + ERLEFLGD +LGL+++  LF       EG+L+ +  
Sbjct: 23  DPELLDRALTHRSYAYENGGLPTNERLEFLGDAVLGLIVTAALFRRHPDLPEGQLAKQRA 82

Query: 77  SLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           S+V+    + VAR +    +  ++ +             SI AD +E++I A+YL   ++
Sbjct: 83  SVVNMRALADVARRIGPTGIGPYLLLGRGEEATGGRDKPSILADTLEAVIGAVYLSNSLD 142

Query: 134 VAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
           VA  FV + +     ++       D KT LQE         P+Y VT  +GPDH  RFT 
Sbjct: 143 VASGFVHRLFDPLLDEAAGRGAGLDWKTSLQEQTALLGLGPPDYVVT-EAGPDHAKRFTA 201

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEV---LKR 222
              ++G    +G   SK+ AEQ AAA     L++
Sbjct: 202 FARVAGEVLGEGEGGSKKEAEQRAAATAFAMLEK 235


>gi|319937586|ref|ZP_08011991.1| ribonuclease III [Coprobacillus sp. 29_1]
 gi|319807426|gb|EFW04035.1| ribonuclease III [Coprobacillus sp. 29_1]
          Length = 232

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 107/227 (47%), Gaps = 7/227 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLIST 57
           M  L +   E      F   SL ++A TH+S ++    Y + YERLEF+GD +L L +S 
Sbjct: 1   MKILDFLQAE---NIPFQKLSLYKEAFTHASYANEAHHYNKDYERLEFMGDAVLQLYVSD 57

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF+ F    EG L+   + LV  E+ ++ ++EL L   + +     K       S+ A+
Sbjct: 58  FLFHLFPDVPEGTLTTLRSKLVREESLARFSKELGLGELLFLGVGEEKSGGRERESVLAN 117

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYK 176
           + ES I ALYLD G +     +++   Q           D KT LQE   A    T  Y+
Sbjct: 118 IFESFIGALYLDCGKDEVIKILEQTIFQHVNDLDYDDITDYKTTLQELIQADQRKTVTYE 177

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +   SGP + P F V V +  +    G   SK+ AEQ AA + L + 
Sbjct: 178 LLETSGPSNAPEFKVAVIMDEMRLGVGKGTSKKRAEQQAAKDALNKL 224


>gi|295693172|ref|YP_003601782.1| ribonuclease iii [Lactobacillus crispatus ST1]
 gi|295031278|emb|CBL50757.1| Ribonuclease III [Lactobacillus crispatus ST1]
          Length = 229

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 72/230 (31%), Positives = 109/230 (47%), Gaps = 10/230 (4%)

Query: 1   MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLI 55
           M + ++   L+      F +  LLE+A THSS S+ +       YE+LEFLGD +L L +
Sbjct: 1   MVSTKFLKKLKDEYNIVFNDEKLLEEAFTHSSYSNEHPNDGIRDYEKLEFLGDAVLELAV 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S  ++ H+    EGEL+   +++V  E  S+ A E      I + +   K       ++ 
Sbjct: 61  SNYVYLHYPKLNEGELTRLRSNIVRTEGFSEFAIECGFQDEIHLGNGEEKAGARHRKTLL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPE 174
            DV E+   AL+LD G+     F+         K      RD KT+LQE       V  E
Sbjct: 121 EDVFEAFNGALFLDQGMPAVEHFLHLTVYPLIDKGEFDDSRDYKTDLQEVLQQDGPVNIE 180

Query: 175 YKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           Y V   S  P H   F V ++I+G   ++G   +K+AAEQ AA   L++ 
Sbjct: 181 YTVISESQLPSH---FVVELKINGKVESKGEGHNKKAAEQQAAKVALQKL 227


>gi|21674928|ref|NP_662993.1| ribonuclease III [Chlorobium tepidum TLS]
 gi|28201878|sp|Q8KAN7|RNC_CHLTE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|21648156|gb|AAM73335.1| ribonuclease III [Chlorobium tepidum TLS]
          Length = 272

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 108/225 (48%), Gaps = 9/225 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ------ESYERLEFLGDRILGLLISTLLF 60
           + L +  G    NR +   ALTH S+ H +       ES +RLEFLGD +L LLIS  LF
Sbjct: 33  THLARLTG-RPCNRLIYRTALTHRSVLHDHHSEEHKPESNQRLEFLGDAVLDLLISEHLF 91

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  + EG LS     +V+ ++ +  A EL L   + +     K       S  AD +E
Sbjct: 92  KQFPGSDEGHLSSNRAKIVNRKSLAAFALELQLGEHLIIGESADKQKIRTSESALADALE 151

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +L+ A+YLD G+  A  F+  +   +    K  +   + K+ L E+  ++    P Y V 
Sbjct: 152 ALVGAIYLDQGLAGAERFITNHVIAKVDLHKLVEAEYNYKSRLIEYTQSRQLPPPLYTVI 211

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              G +H+  F V V  +G    +G    K+ AEQ+AA E +KR 
Sbjct: 212 TEEGAEHEKTFVVEVSCNGQPLGRGTAPRKKDAEQLAAKEAMKRL 256


>gi|15603994|ref|NP_220509.1| ribonuclease III [Rickettsia prowazekii str. Madrid E]
 gi|6226018|sp|Q9ZE31|RNC_RICPR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|3860685|emb|CAA14586.1| RIBONUCLEASE III (rnc) [Rickettsia prowazekii]
          Length = 225

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 115/224 (51%), Gaps = 5/224 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLL 59
             +  LE  +GY+F N+ LL +AL+H S+     + Y + YERLEFLGD +L LLI+ +L
Sbjct: 2   ESFEKLETLLGYSFKNKELLIEALSHPSLRQYHEYKYDKDYERLEFLGDAVLNLLITEIL 61

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F +F++ KEG L+   + LV  ET   V  +L L  +I ++            +   +  
Sbjct: 62  FKNFENYKEGNLAKIRSYLVCKETICIVGTKLALKDYIIMTHGEEVAGGRDNPNNIENAT 121

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E+LIAA+YLD  IE+    ++K W +          D KT LQEWA A     P Y++  
Sbjct: 122 EALIAAIYLDSNIEITHNIIEKLWAEFMKVQNLTDYDPKTALQEWAQANSHHLPIYRLIK 181

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           R G  H   FTV+V++           S + AE+ AA  +L R 
Sbjct: 182 REGAAHSSIFTVLVKVKDYEQ-TCTGYSIKEAEKKAARSLLHRL 224


>gi|255264048|ref|ZP_05343390.1| ribonuclease III [Thalassiobium sp. R2A62]
 gi|255106383|gb|EET49057.1| ribonuclease III [Thalassiobium sp. R2A62]
          Length = 226

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 76/205 (37%), Positives = 112/205 (54%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
                E R+G+ F   +LL +A+TH+S+S   ++  +RLEFLGDR+LGL+++  L     
Sbjct: 6   DLKAFEGRLGHRFETPALLVQAVTHASMSSPNRDDNQRLEFLGDRVLGLVMAEALLAADP 65

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            A EG L+ R+N+LV  E C+ VARE+D+ + +++     K       ++  D +E++IA
Sbjct: 66  MAPEGILAPRYNALVRKEACADVAREVDVGAVLKLGRSEMKSGGRRKLALLGDAMEAVIA 125

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           A+YLD G E A   V + W  R        RDAKT LQEWA  +    P Y    R+GPD
Sbjct: 126 AVYLDAGFEAAREMVLRLWGTRIHTVKADARDAKTALQEWAQGRGEGPPNYTEVSRTGPD 185

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKR 209
           H P F + V +      +    SKR
Sbjct: 186 HAPIFEIEVRLEAGQSYRAKAGSKR 210


>gi|320352215|ref|YP_004193554.1| RNAse III [Desulfobulbus propionicus DSM 2032]
 gi|320120717|gb|ADW16263.1| RNAse III [Desulfobulbus propionicus DSM 2032]
          Length = 243

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 66/209 (31%), Positives = 106/209 (50%), Gaps = 5/209 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES---YERLEFLGDRILGLLISTLLFNH 62
              L++RIGY F +  LL+ +L HSS +    +     E  EFLGD +L L +  +LF  
Sbjct: 16  LHELQERIGYRFRDLRLLQLSLIHSSFAFERLDDGRHNETQEFLGDAVLDLTVGYILFVR 75

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F   +EG+L+   ++LV+ +  +  ARE+DL  ++ +            +SI +   E+L
Sbjct: 76  FPEMREGKLTRIRSALVNEQGLADRAREIDLGKYLLLGKGENASNGRDKSSILSCAYEAL 135

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           + AL+LDGG + A  FV ++++    +  +     DAK+ LQE    +F   PEY +T  
Sbjct: 136 VGALFLDGGYDQALAFVRRFFEPHIDQHQEQLVSADAKSSLQELLQERFNEGPEYMLTGE 195

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            GP H   F++ V   G     G   SK+
Sbjct: 196 EGPAHARLFSITVTFQGEELGSGRASSKK 224


>gi|134295164|ref|YP_001118899.1| ribonuclease III [Burkholderia vietnamiensis G4]
 gi|134138321|gb|ABO54064.1| RNAse III [Burkholderia vietnamiensis G4]
          Length = 416

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I
Sbjct: 58  GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG E A   + + +      +      +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202


>gi|227878860|ref|ZP_03996766.1| ribonuclease III [Lactobacillus crispatus JV-V01]
 gi|256843377|ref|ZP_05548865.1| ribonuclease III [Lactobacillus crispatus 125-2-CHN]
 gi|256849801|ref|ZP_05555232.1| double stranded RNA-specific ribonuclease RNase [Lactobacillus
           crispatus MV-1A-US]
 gi|262046954|ref|ZP_06019914.1| ribonuclease III [Lactobacillus crispatus MV-3A-US]
 gi|293381175|ref|ZP_06627183.1| ribonuclease III [Lactobacillus crispatus 214-1]
 gi|227861551|gb|EEJ69164.1| ribonuclease III [Lactobacillus crispatus JV-V01]
 gi|256614797|gb|EEU19998.1| ribonuclease III [Lactobacillus crispatus 125-2-CHN]
 gi|256713290|gb|EEU28280.1| double stranded RNA-specific ribonuclease RNase [Lactobacillus
           crispatus MV-1A-US]
 gi|260572936|gb|EEX29496.1| ribonuclease III [Lactobacillus crispatus MV-3A-US]
 gi|290922215|gb|EFD99209.1| ribonuclease III [Lactobacillus crispatus 214-1]
          Length = 229

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 73/230 (31%), Positives = 109/230 (47%), Gaps = 10/230 (4%)

Query: 1   MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLI 55
           M + ++   L+      F N  LLE+A THSS S+ +       YE+LEFLGD +L L +
Sbjct: 1   MVSTKFLKKLKDDYNIEFNNEKLLEEAFTHSSYSNEHPNDGIRDYEKLEFLGDAVLELAV 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S  ++ H+    EGEL+   +++V  E  S+ A E      I + +   K       ++ 
Sbjct: 61  SNYVYLHYPKLNEGELTRLRSNIVRTEGFSEFAIECGFQDEIHLGNGEEKAGARHRKTLL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPE 174
            DV E+   AL+LD G+     F+         K      RD KT+LQE       V  E
Sbjct: 121 EDVFEAFNGALFLDQGMPAVEHFLHLTVYPLIDKGEFDDSRDYKTDLQEVLQQDGPVNIE 180

Query: 175 YKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           Y V   S  P H   F V ++I+G   ++G   +K+AAEQ AA   L++ 
Sbjct: 181 YTVISESQLPSH---FVVELKINGKVESKGEGHNKKAAEQQAAKFALQKL 227


>gi|172060069|ref|YP_001807721.1| ribonuclease III [Burkholderia ambifaria MC40-6]
 gi|171992586|gb|ACB63505.1| Ribonuclease III [Burkholderia ambifaria MC40-6]
          Length = 425

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPPSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I
Sbjct: 58  SKLDEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADAFEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG E A   + + +      +      +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202


>gi|237732553|ref|ZP_04563034.1| ribonuclease III [Citrobacter sp. 30_2]
 gi|226908092|gb|EEH94010.1| ribonuclease III [Citrobacter sp. 30_2]
          Length = 204

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 66/190 (34%), Positives = 98/190 (51%), Gaps = 6/190 (3%)

Query: 24  EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83
           ++ALTH S S  +    ERLEFLGD IL  +I+  L++ F    EG++S    +LV   T
Sbjct: 2   QQALTHRSASSKH---NERLEFLGDSILSFVIANALYHRFPRVDEGDMSRMRATLVRGNT 58

Query: 84  CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143
            +++ARE DL   +R+     K       SI AD VE+LI  ++LD  I+     +  ++
Sbjct: 59  LAELAREFDLGECLRLGPGELKSGGFRRESILADTVEALIGGVFLDSDIQTVEQLILNWY 118

Query: 144 KQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-AP 200
           + R   +  G  ++D KT LQE+   +    P Y V    G  HD  FT+  ++SGL  P
Sbjct: 119 QTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLSEP 178

Query: 201 AQGMDCSKRA 210
             G   S+R 
Sbjct: 179 VVGTGSSRRK 188


>gi|115377692|ref|ZP_01464885.1| ribonuclease III [Stigmatella aurantiaca DW4/3-1]
 gi|310821555|ref|YP_003953913.1| ribonuclease III [Stigmatella aurantiaca DW4/3-1]
 gi|115365298|gb|EAU64340.1| ribonuclease III [Stigmatella aurantiaca DW4/3-1]
 gi|309394627|gb|ADO72086.1| Ribonuclease III [Stigmatella aurantiaca DW4/3-1]
          Length = 240

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 113/223 (50%), Gaps = 6/223 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59
            R  TLE R+G  F  + L   ALTH S  + +++      ERLEFLGD ++ L IS  L
Sbjct: 8   ERVQTLETRLGVPFLRKDLGLAALTHKSYFNEHRDAGLQDNERLEFLGDAVVDLAISHRL 67

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
              F  A EGELS     +V+ E  +++AR L L   + +             S+ AD +
Sbjct: 68  MERFPLAAEGELSKLRALIVNEEGLARIARRLSLGELLLLGRGEEMTGGREKNSLLADAL 127

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           E+++ A++L  G+E     VD+++ +    +  G+   D KT+LQE A  +  V P Y+V
Sbjct: 128 EAVVGAVFLGAGMEPVMVLVDQHFAEALDGVAQGRSGLDYKTKLQEDAQTRLKVPPRYRV 187

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
              +GPDH+  F V V I     A+    +K+ AEQ AA   L
Sbjct: 188 VAEAGPDHEKTFEVEVSIGSELYARATGRNKKEAEQAAARATL 230


>gi|325830746|ref|ZP_08164130.1| ribonuclease III [Eggerthella sp. HGA1]
 gi|325487153|gb|EGC89596.1| ribonuclease III [Eggerthella sp. HGA1]
          Length = 304

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 81/223 (36%), Positives = 112/223 (50%), Gaps = 4/223 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNH 62
           + +  ++ +GY FA+  LL  A+TH S +   S + SYERLEFLGD ILG +++T+ F+ 
Sbjct: 33  KLAVAQEILGYRFADEQLLLSAITHPSATEGKSVKYSYERLEFLGDSILGAIVATIAFDR 92

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L+    +LVS  + S VA  L  A  I   S         + S   +V E++
Sbjct: 93  FHDLDEGGLTRIKVALVSGASLSDVAERLGFADVIVFGSSETGTGRRGLHSALENVYEAV 152

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +AAL+LDGGIE A  FV      R      +   + K+ LQE      G+TP YK+    
Sbjct: 153 VAALFLDGGIEAAEGFVRATLIPRMSADMAREPENPKSALQEKLQED-GITPTYKLVETQ 211

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP HD  F   V       A+G   +K+ AE  AA   L R G
Sbjct: 212 GPPHDRTFVAQVFAGSQGLARGTGRTKKEAESQAAKSTLARLG 254


>gi|297156899|gb|ADI06611.1| ribonuclease III [Streptomyces bingchenggensis BCW-1]
          Length = 276

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 71/212 (33%), Positives = 112/212 (52%), Gaps = 6/212 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           +A  ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L
Sbjct: 20  TASSHTILEGRLGYQLES-ALLVRALTHRSFAYENGGLPTNERLEFLGDSVLGLVVTDTL 78

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +       EG+L+    ++V++   ++V R LDL +FIR+             SI AD +
Sbjct: 79  YRIHPDLPEGQLAKLRAAVVNSRALAEVGRGLDLGAFIRLGRGEEGTGGRDKASILADTL 138

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD G++ A   V + +     +S       D KT LQE    +    PEY +
Sbjct: 139 EAVIGAVYLDKGLDAAAELVHRLFDPLIDRSSNLGAGLDWKTSLQELTATEGLGVPEY-L 197

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
              +GPDH+  FT    + G+A   G   SK+
Sbjct: 198 VSETGPDHEKTFTAAARVGGVAYGTGTGRSKK 229


>gi|113868517|ref|YP_727006.1| ribonuclease III [Ralstonia eutropha H16]
 gi|123133802|sp|Q0K8N3|RNC_RALEH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|113527293|emb|CAJ93638.1| dsRNA-specific ribonuclease [Ralstonia eutropha H16]
          Length = 256

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 63/209 (30%), Positives = 101/209 (48%), Gaps = 6/209 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +    L++R+GY F+   LL++ALTH S      +  ERLEFLGD +L   ++ +L+  F
Sbjct: 1   MNLDALQQRLGYRFSKPELLQQALTHRS---HSAQHNERLEFLGDSVLNCAVADMLYGMF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  +   ++A+ L L+  +R+     K       SI AD +E+++
Sbjct: 58  GKLDEGDLSRVRANLVKQQALYEIAQMLQLSDTLRLGEGELKSGGFRRPSILADALEAIV 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LD G + A   + K +      +      +DAKT LQE+        P+Y V    
Sbjct: 118 GAVFLDAGFDAARALIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYNVIATH 177

Query: 182 GPDHDPRFTVVVEISGLAPAQ-GMDCSKR 209
           G  H  +F V   +  L     G   S+R
Sbjct: 178 GAAHSQQFEVECTVPKLEVRVFGTGASRR 206


>gi|161723174|ref|YP_442265.2| ribonuclease III [Burkholderia thailandensis E264]
          Length = 469

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I
Sbjct: 58  SKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG E A   + + +      +      +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDIKVSGSG 202


>gi|302542233|ref|ZP_07294575.1| ribonuclease III [Streptomyces hygroscopicus ATCC 53653]
 gi|302459851|gb|EFL22944.1| ribonuclease III [Streptomyces himastatinicus ATCC 53653]
          Length = 312

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 72/212 (33%), Positives = 111/212 (52%), Gaps = 6/212 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
            A  ++ LE R+GY   + +LL +ALTH S ++      + ERLEFLGD +LGL+++  L
Sbjct: 30  KASSHTILEGRLGYQLES-ALLVRALTHRSFAYENGGLPTNERLEFLGDSVLGLVVTDTL 88

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +       EG+L+    ++V++   ++V R LDL +FIR+             SI AD +
Sbjct: 89  YRIHPDLPEGQLAKLRAAVVNSRALAEVGRGLDLGAFIRLGRGEEGTGGRDKASILADTL 148

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177
           E++I A+YLD G++ A   V + +     KS       D KT LQE    +    PEY +
Sbjct: 149 EAVIGAVYLDRGLDAAAELVHRLFDPLIEKSSNLGAGLDWKTSLQELTATEGLGVPEY-L 207

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
              +GPDH+  FT    + G+A   G   SK+
Sbjct: 208 VSETGPDHEKTFTAAARVGGVAYGTGTGRSKK 239


>gi|77416567|sp|Q7UGZ7|RNC_RHOBA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
          Length = 266

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 72/218 (33%), Positives = 117/218 (53%), Gaps = 3/218 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +    ++ +GY F +  LL  ALTH+S +     S ERLEFLGD +LGL +   LFN + 
Sbjct: 33  KIERCQEILGYDFRDLDLLRSALTHASGASHRLASNERLEFLGDSVLGLTVCEWLFNEYP 92

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+L+   +++VS  +C +VA +L L   + V   + ++  S+  S+ +DV E++IA
Sbjct: 93  EYSEGDLTKIKSAVVSRRSCGKVACKLGLDQCLIVGRGVTRNR-SYPKSLVSDVFEAVIA 151

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           ALY+DGG E+    +  +  +    +   +   + K+ LQ++A  +   TP YK+   +G
Sbjct: 152 ALYIDGGPEIVRDRLKLWLAEEVNLAVDTQGSGNHKSVLQQFAQRELSATPVYKLIRETG 211

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           PDH   F +   +     A     +K+ AEQ AAA  L
Sbjct: 212 PDHRKMFLMGAMVDDRRFAPAWGNNKKDAEQRAAANAL 249


>gi|312795542|ref|YP_004028464.1| ribonuclease III [Burkholderia rhizoxinica HKI 454]
 gi|312167317|emb|CBW74320.1| Ribonuclease III (EC 3.1.26.3) [Burkholderia rhizoxinica HKI 454]
          Length = 408

 Score =  226 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 103/206 (50%), Gaps = 8/206 (3%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           ++  S LE R+ Y F N  LL +A+TH S S ++    ERLEFLGD +L  +++ LLF  
Sbjct: 18  SMPLSPLESRLHYEFRNAELLRQAMTHRSHSATH---NERLEFLGDSVLNCVVAALLFQR 74

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG+LS    +LV  ++  ++A+ L++A  +R+     +       SI AD  E++
Sbjct: 75  FGKLDEGDLSRVRANLVKQQSLYEIAQALNIAEALRLGEGELRSGGFRRPSILADTFEAV 134

Query: 123 IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           + A++LDGG + A T + + +      +      +DAKT LQE+        P Y V   
Sbjct: 135 LGAIFLDGGFDAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPSYAVIAT 194

Query: 181 SGPDHDPRFTVVVEISG---LAPAQG 203
           +G  H+ +F V   +          G
Sbjct: 195 TGAAHNQQFEVECTVPKLEVKVFGTG 220


>gi|304413540|ref|ZP_07395013.1| ribonuclease III [Candidatus Regiella insecticola LSR1]
 gi|304284383|gb|EFL92776.1| ribonuclease III [Candidatus Regiella insecticola LSR1]
          Length = 235

 Score =  226 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 71/221 (32%), Positives = 112/221 (50%), Gaps = 15/221 (6%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M  +    LE R+GYAF  R+LL +ALTH S S ++    ERLEFLGD IL   I+  L+
Sbjct: 1   MDPIIIKKLETRLGYAFKQRALLVQALTHRSASRTH---NERLEFLGDAILNFFIAKALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG++S    +LV  +T +++A E DL+ ++ +     K+  S   SI AD VE
Sbjct: 58  QRFSDINEGDMSRMRATLVRGKTLAEIAHEFDLSDYLYLGKGELKNGKSPRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I+     +  ++++R   +  G+ ++D KT LQE+  +     P Y VT
Sbjct: 118 ALIGGIFLDSDIQTTERLLLTWYEKRLAEISPGEKQKDPKTRLQEYLQSHHLPLPSYLVT 177

Query: 179 FRSGPDHDPRFTVVVEI----------SGLAPAQGMDCSKR 209
              G  H+ +F +  +                 +G   S+R
Sbjct: 178 QVHGEAHEQKFIIHCKFIIPCRENNLTKQEITVRGCGLSRR 218


>gi|194290152|ref|YP_002006059.1| ribonuclease iii [Cupriavidus taiwanensis LMG 19424]
 gi|238692743|sp|B3R1Z9|RNC_CUPTR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|193223987|emb|CAQ69996.1| Ribonuclease III [Cupriavidus taiwanensis LMG 19424]
          Length = 256

 Score =  226 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 63/209 (30%), Positives = 101/209 (48%), Gaps = 6/209 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +    L++R+GY F+   LL++ALTH S      +  ERLEFLGD +L   ++ +L+  F
Sbjct: 1   MNLDALQQRLGYRFSKPELLQQALTHRS---HSAQHNERLEFLGDSVLNCAVADMLYGMF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  +   ++A+ L L+  +R+     K       SI AD +E+++
Sbjct: 58  GKLDEGDLSRVRANLVKQQALYEIAQMLQLSDTLRLGEGELKSGGFRRPSILADALEAIV 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LD G + A   + K +      +      +DAKT LQE+        P+Y V    
Sbjct: 118 GAVFLDAGFDAARALIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYNVIATH 177

Query: 182 GPDHDPRFTVVVEISGLAPAQ-GMDCSKR 209
           G  H  +F V   +  L     G   S+R
Sbjct: 178 GAAHSQQFEVECTVPKLEVRVFGTGASRR 206


>gi|222111791|ref|YP_002554055.1| ribonuclease iii [Acidovorax ebreus TPSY]
 gi|221731235|gb|ACM34055.1| ribonuclease III [Acidovorax ebreus TPSY]
          Length = 228

 Score =  226 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 74/208 (35%), Positives = 107/208 (51%), Gaps = 6/208 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M     STL++R+ + F++ SLL++ALTH S S    +  ERLEFLGD +L L +S+LLF
Sbjct: 1   MQPASLSTLQQRLQHQFSDASLLQRALTHRSFS---ADHNERLEFLGDSVLSLAVSSLLF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                  EGELS     LV  ++  Q+A  L L   +R+     K       SI AD +E
Sbjct: 58  RRMRDLPEGELSRVRALLVKQDSLHQIAVRLQLPPVLRLGEGEAKSGGKLRPSILADALE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD G E A   V + ++   L     +  +DAKT LQEW   +    P+Y+V 
Sbjct: 118 AIIGAVYLDAGYECAEQLVHRLFEGVELSPRLQEAAKDAKTALQEWLQGRKMNLPQYRVV 177

Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMD 205
             +G  H+  F V  E+       +G  
Sbjct: 178 STTGAAHNQVFHVECEVVELQRVERGSG 205


>gi|159898112|ref|YP_001544359.1| ribonuclease III [Herpetosiphon aurantiacus ATCC 23779]
 gi|159891151|gb|ABX04231.1| Ribonuclease III [Herpetosiphon aurantiacus ATCC 23779]
          Length = 234

 Score =  226 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 68/209 (32%), Positives = 107/209 (51%), Gaps = 5/209 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59
           +  + L+  +GY F + + L  A+ H S  H + E    S ERLEFLGD +L  +  + L
Sbjct: 1   MDLNKLQAELGYTFNDLNFLRAAMLHRSYVHEHPEAGSESNERLEFLGDALLNFICGSFL 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F+ F    EG+L+     LV   T + +AR  +L S++++S    +       ++ AD  
Sbjct: 61  FHEFPELGEGDLTKTRAMLVQTRTLAGLARRFNLGSYVQISRGEERAKARERDNLLADAF 120

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E+L+AA+ LDGG E A  FV    K     SG   +D KT+LQ++   +  +TP Y+   
Sbjct: 121 EALLAAIALDGGWEAARNFVLPLLKS-VKASGVQNQDYKTDLQQYVQGRINLTPSYREVN 179

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
            +GPDH+  +T+ V         G+  SK
Sbjct: 180 VTGPDHERTWTIEVWAGDALLGVGVGTSK 208


>gi|330814142|ref|YP_004358381.1| signal peptidase I [Candidatus Pelagibacter sp. IMCC9063]
 gi|327487237|gb|AEA81642.1| signal peptidase I [Candidatus Pelagibacter sp. IMCC9063]
          Length = 224

 Score =  226 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 88/225 (39%), Positives = 127/225 (56%), Gaps = 1/225 (0%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M     + +EK +   F N + LEKALTH SI+     + ERLEF+GDR+LGL+I+T L 
Sbjct: 1   MDKNYLTKVEKILNIKFKNTNFLEKALTHKSITKISASNNERLEFIGDRVLGLVIATKLS 60

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             +    EG L  +  SLV+ +TCSQ+  +L+L  +I +SS  +K+       I  D+ E
Sbjct: 61  ILYPEDVEGSLDKKLASLVNKDTCSQIIEKLNLGKYILLSSSQQKNKIGHK-KIYGDLCE 119

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           SLI A+YLD G   A  FV   W++   +S     D+KT+LQE++   F V P YK    
Sbjct: 120 SLIGAVYLDKGFSEANKFVLSLWRENLKRSTIVEVDSKTQLQEYSLKFFKVLPIYKNLSN 179

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            GP H P F + V+I+      G   SK+ AEQ+AA+++LK   +
Sbjct: 180 KGPSHKPSFKISVKITNSKLCTGEGTSKKKAEQLAASKLLKTLNL 224


>gi|293406009|ref|ZP_06650001.1| rnc [Escherichia coli FVEC1412]
 gi|306814369|ref|ZP_07448531.1| ribonuclease III [Escherichia coli NC101]
 gi|291428217|gb|EFF01244.1| rnc [Escherichia coli FVEC1412]
 gi|305851763|gb|EFM52215.1| ribonuclease III [Escherichia coli NC101]
 gi|313648245|gb|EFS12689.1| ribonuclease III [Shigella flexneri 2a str. 2457T]
 gi|320176131|gb|EFW51198.1| Ribonuclease III [Shigella dysenteriae CDC 74-1112]
 gi|320662723|gb|EFX30062.1| ribonuclease III [Escherichia coli O55:H7 str. USDA 5905]
 gi|323156225|gb|EFZ42384.1| ribonuclease III [Escherichia coli EPECa14]
 gi|323173115|gb|EFZ58746.1| ribonuclease III [Escherichia coli LT-68]
 gi|323177303|gb|EFZ62891.1| ribonuclease III [Escherichia coli 1180]
 gi|326345056|gb|EGD68800.1| Ribonuclease III [Escherichia coli O157:H7 str. 1044]
 gi|332092616|gb|EGI97688.1| ribonuclease III [Shigella boydii 3594-74]
 gi|333000427|gb|EGK20009.1| ribonuclease III [Shigella flexneri VA-6]
 gi|333000857|gb|EGK20429.1| ribonuclease III [Shigella flexneri K-218]
 gi|333001660|gb|EGK21227.1| ribonuclease III [Shigella flexneri K-272]
 gi|333015936|gb|EGK35271.1| ribonuclease III [Shigella flexneri K-227]
 gi|333016828|gb|EGK36154.1| ribonuclease III [Shigella flexneri K-304]
          Length = 204

 Score =  226 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 65/190 (34%), Positives = 98/190 (51%), Gaps = 6/190 (3%)

Query: 24  EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83
           ++ALTH S S  +    ERLEFLGD IL  +I+  L++ F    EG++S    +LV   T
Sbjct: 2   QQALTHRSASSKH---NERLEFLGDSILSYVIANALYHRFPRVDEGDMSRMRATLVRGNT 58

Query: 84  CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143
            +++ARE +L   +R+     K       SI AD VE+LI  ++LD  I+     +  ++
Sbjct: 59  LAELAREFELGECLRLGPGELKSGGFRRESILADTVEALIGGVFLDSDIQTVEKLILNWY 118

Query: 144 KQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-AP 200
           + R   +  G  ++D KT LQE+   +    P Y V    G  HD  FT+  ++SGL  P
Sbjct: 119 QTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPTYLVVQVRGEAHDQEFTIHCQVSGLSEP 178

Query: 201 AQGMDCSKRA 210
             G   S+R 
Sbjct: 179 VVGTGSSRRK 188


>gi|238650709|ref|YP_002916562.1| ribonuclease III [Rickettsia peacockii str. Rustic]
 gi|259646552|sp|C4K1R3|RNC_RICPU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|238624807|gb|ACR47513.1| ribonuclease III [Rickettsia peacockii str. Rustic]
          Length = 227

 Score =  226 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 114/224 (50%), Gaps = 5/224 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59
             +  LEK + Y+F N+ LL +AL+H S+   ++    + YERLEFLGD +L L+I+ +L
Sbjct: 2   ESFEKLEKLLSYSFKNKELLIEALSHPSLRQHHEYKDDKDYERLEFLGDAVLNLVITEIL 61

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F +F +  EG L+   + LV  ET   V  +L L ++I ++            +   +  
Sbjct: 62  FRNFANYNEGNLAKIRSYLVCKETICMVGAKLTLKNYIIMTHGEEVAGGRDNLNNIENAT 121

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E+LIAA+YLD  IE     ++K W +          D KT LQEWA A     P Y++  
Sbjct: 122 EALIAAIYLDSNIETTHDIIEKLWAEFIKVQNLTDYDPKTALQEWAQASDHHLPIYRLIK 181

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           R G  H   FTV+V++       G   + + AE+ AA  +L R 
Sbjct: 182 REGASHASTFTVLVKVKDYEQ-TGTGHAIKEAEKNAARSLLHRL 224


>gi|269926036|ref|YP_003322659.1| ribonuclease III [Thermobaculum terrenum ATCC BAA-798]
 gi|269789696|gb|ACZ41837.1| ribonuclease III [Thermobaculum terrenum ATCC BAA-798]
          Length = 234

 Score =  226 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 114/224 (50%), Gaps = 8/224 (3%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTL 58
           S+  + TL++R+GY F N  LL+ ALTH S ++      E+ ER EFLGD IL  ++   
Sbjct: 3   SSDSFITLQERLGYKFRNIELLKTALTHRSFANESLEKTETNERFEFLGDSILAFVVGEA 62

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF  F  A EG L+     LV  +  + ++R L +  FI +    R    S   S+ AD 
Sbjct: 63  LFRLFPRASEGILTRARAHLVGRKNLADISRTLGIGDFILLGKGARLSGSSQSESVLADA 122

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           +E+LIAA+YLD  +E   + V +  +  +  ++     +D KT LQE +H  +   P Y 
Sbjct: 123 LEALIAAVYLDSDLETCRSVVFRLLRLSKEEIEHWLDVKDNKTRLQELSHRLYRTNPIYT 182

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           V     P     F V V+++    AQG   SK  AEQ AA + L
Sbjct: 183 VIAA--PPVRDNFIVQVKVND-VSAQGEGRSKSEAEQEAARKAL 223


>gi|118602619|ref|YP_903834.1| ribonuclease III [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
 gi|118567558|gb|ABL02363.1| RNAse III [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
          Length = 221

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 73/220 (33%), Positives = 114/220 (51%), Gaps = 6/220 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             L+K+I Y F + SLL+ ALTH S+    + + ERLEFLGD ILG++IS  L+  F + 
Sbjct: 2   KKLQKKINYQFKDLSLLKLALTHCSMG---KNNNERLEFLGDSILGVIISKELYQRFPNI 58

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+LS   + LV  +T +Q++  L+L++ + +     K       SIQAD +E++  A+
Sbjct: 59  DEGKLSRLRSHLVRDQTLTQLSAGLELSNSLILGFGELKSGGYRRESIQADAIEAIFGAV 118

Query: 127 YLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
            LD   E   T V   ++     +      +D KT+LQE+      V P+Y++T   G D
Sbjct: 119 LLDSNFETTSTVVLDLFEMLLNNISPDDSLKDPKTQLQEYLQKYGNVLPKYELTDTIGKD 178

Query: 185 HDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVLKRE 223
           H+  FT+   +            S + AEQ  A  +LK+ 
Sbjct: 179 HNAIFTINCLLKDQNLQVSQSAKSIKKAEQSCAQTLLKKL 218


>gi|115351064|ref|YP_772903.1| ribonuclease III [Burkholderia ambifaria AMMD]
 gi|115281052|gb|ABI86569.1| RNAse III [Burkholderia ambifaria AMMD]
          Length = 425

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPPSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I
Sbjct: 58  SKLDEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADAFEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG E A   + + +      +      +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202


>gi|157964181|ref|YP_001499005.1| ribonuclease III [Rickettsia massiliae MTU5]
 gi|189043342|sp|A8F0M2|RNC_RICM5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|157843957|gb|ABV84458.1| Ribonuclease III [Rickettsia massiliae MTU5]
          Length = 227

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 76/224 (33%), Positives = 115/224 (51%), Gaps = 5/224 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59
             + TLEK + Y+F N+ LL +AL+H S+   ++    + YERLEFLGD +L L+I+ +L
Sbjct: 2   ESFETLEKLLSYSFKNKELLIEALSHPSLRQHHEYKDDKDYERLEFLGDAVLNLVITEIL 61

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F +F +  EG L+   + LV  ET   V  +L L ++I ++            +   +  
Sbjct: 62  FRNFANYNEGHLAKIRSYLVCKETICMVGAKLTLKNYIIMTHGEEVAGGRDNLNNIENAT 121

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E+LIAA+YLD  IE     ++K W +          D KT LQEWA A     P Y++  
Sbjct: 122 EALIAAIYLDSNIETTYDIIEKLWAEFIKVQNLTDYDPKTALQEWAQASDHHLPIYRLIK 181

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           R G  H   FTV+V++       G   + + AE+ AA  +L R 
Sbjct: 182 REGASHSSTFTVLVKVKDYEQ-TGTGHAIKEAEKNAARSLLHRL 224


>gi|206559398|ref|YP_002230159.1| ribonuclease III [Burkholderia cenocepacia J2315]
 gi|206561200|ref|YP_002231965.1| ribonuclease III [Burkholderia cenocepacia J2315]
 gi|198035436|emb|CAR51312.1| ribonuclease III 2 [Burkholderia cenocepacia J2315]
 gi|198037242|emb|CAR53164.1| ribonuclease III 1 [Burkholderia cenocepacia J2315]
          Length = 409

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I
Sbjct: 58  GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG E A   + + +      +      +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202


>gi|260220751|emb|CBA28629.1| Ribonuclease 3 [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 224

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 78/210 (37%), Positives = 113/210 (53%), Gaps = 6/210 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L++R+ + F+N SLL +ALTH S S    + YERLEFLGD +LGL IS LL++   + 
Sbjct: 2   TALQQRLQHQFSNVSLLSRALTHRSFS---ADHYERLEFLGDSVLGLAISDLLYSRLGNL 58

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+LS    +LV  ET  Q+A +L L   +++     +       SI AD +E++I A+
Sbjct: 59  PEGDLSRVRANLVRQETLHQLALKLGLPDVLKLGEGEMRSGGPKRASILADALEAIIGAV 118

Query: 127 YLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD G   A   V + ++   +        +DAKTELQEW   +    P Y V    G  
Sbjct: 119 YLDAGFAKAQALVHRLFEAVEINPQMQAIGKDAKTELQEWLQGRKMKLPLYTVVGTIGAA 178

Query: 185 HDPRFTVVVEISGLAPAQ-GMDCSKRAAEQ 213
           H   F V  E+  L  ++ G+  S+RA EQ
Sbjct: 179 HKQSFDVECEVPELRLSERGIGGSRRAGEQ 208


>gi|224476345|ref|YP_002633951.1| ribonuclease III [Staphylococcus carnosus subsp. carnosus TM300]
 gi|254807899|sp|B9DPJ2|RNC_STACT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|222420952|emb|CAL27766.1| putative ribonuclease III [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 242

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 61/235 (25%), Positives = 99/235 (42%), Gaps = 16/235 (6%)

Query: 1   MSALRYSTLEKRIGYAFANR-----------SLLEKALTHSSISHSYQ----ESYERLEF 45
           M+  +   L +     FA++            L ++A +HSS  + +        ERLEF
Sbjct: 1   MTNHKKEALLQNFNKKFADKMHMLKLNYDHLPLYQQAFSHSSFINDFNMDRLAHNERLEF 60

Query: 46  LGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK 105
           LGD +L L +S  LF+ +    EG L+    ++V   +    A ++ L   I +     K
Sbjct: 61  LGDAVLELTVSRYLFDKYPELPEGNLTKMRATIVCEPSLVIFANKIQLNELILLGKGEEK 120

Query: 106 DVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEW 164
                  S+ +D  E+ + ALYLD G++    F ++               D KT+ QE 
Sbjct: 121 TGGRTRPSLVSDAFEAFVGALYLDQGLDAVWQFSEEVIFPHVEDDELMGVVDFKTQFQEL 180

Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            H        Y++    GP H   FT  V + G   A+G   +K+ +EQ AA + 
Sbjct: 181 IHRLSKGNVTYRLIDEQGPAHHRLFTSEVLLEGEPVAKGQGRTKKESEQKAAEKA 235


>gi|148652186|ref|YP_001279279.1| ribonuclease III [Psychrobacter sp. PRwf-1]
 gi|148571270|gb|ABQ93329.1| RNAse III [Psychrobacter sp. PRwf-1]
          Length = 259

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 72/222 (32%), Positives = 114/222 (51%), Gaps = 7/222 (3%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           +L+K++GY+F + SL + ALTH S     + +YERLEFLGD +LG++I   L+  +    
Sbjct: 28  SLQKQLGYSFNDTSLAKLALTHRSF--DGKINYERLEFLGDALLGMIIGEALYYQYPKQD 85

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG L+    +LV  E+   VA++L+L+S++ +    RK       SI AD VESLI A+Y
Sbjct: 86  EGRLTRMRATLVRQESLVVVAQKLNLSSYLILGVGERKGGGRERASILADTVESLIGAIY 145

Query: 128 LDG-GIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           LD   ++     V  ++ +    +   +  +DAK+ LQEW        P Y +    G  
Sbjct: 146 LDSQSVDTVKACVLDWFAELIDNVNDQRVLKDAKSRLQEWLQGYKFELPNYDLLETQGNA 205

Query: 185 HDPRFTVVVEIS--GLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            +  F V  E+      P      S+R AEQ  A +++ +  
Sbjct: 206 PNQVFIVRCEVDVPHTTPIVESGESRRIAEQKTAEKMINQLN 247


>gi|121595570|ref|YP_987466.1| ribonuclease III [Acidovorax sp. JS42]
 gi|120607650|gb|ABM43390.1| RNAse III [Acidovorax sp. JS42]
          Length = 228

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 74/208 (35%), Positives = 107/208 (51%), Gaps = 6/208 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M     STL++R+ + F++ SLL++ALTH S S    +  ERLEFLGD +L L +S+LLF
Sbjct: 1   MQPASLSTLQQRLQHQFSDASLLQRALTHRSFS---ADHNERLEFLGDSVLSLAVSSLLF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                  EGELS     LV  ++  Q+A  L L   +R+     K       SI AD +E
Sbjct: 58  RRMRDLPEGELSRVRALLVKQDSLHQIAVRLQLPPVLRLGEGEAKSGGKLRPSILADALE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD G E A   V + ++   L     +  +DAKT LQEW   +    P+Y+V 
Sbjct: 118 AIIGAVYLDAGYECAEQLVHRLFEGVELSPRLQEAAKDAKTALQEWLQGRKMNLPQYRVV 177

Query: 179 FRSGPDHDPRFTVVVEISG-LAPAQGMD 205
             +G  H+  F V  E+       +G  
Sbjct: 178 STTGAAHNQVFHVECEVVELQRVERGSG 205


>gi|118470776|ref|YP_886758.1| ribonuclease III [Mycobacterium smegmatis str. MC2 155]
 gi|118172063|gb|ABK72959.1| ribonuclease III [Mycobacterium smegmatis str. MC2 155]
          Length = 230

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 109/224 (48%), Gaps = 9/224 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH 62
            ++ L + +G A     LL  ALTH S S+      + ERLEFLGD +LGL I+  L++ 
Sbjct: 4   SHAALLEALGVALP-AELLTIALTHRSYSYENGGLPTNERLEFLGDAVLGLTITEELYHR 62

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVV 119
                EG+L+    S+V+ +  + V R L    L + + +         +  +SI AD V
Sbjct: 63  HPDRAEGDLAKLRASIVNTQALADVGRGLTDEGLGAHLFLGKGEENSGGADKSSILADGV 122

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177
           ESL+ A+YL+ G+ V    + + + +    +       D K+ LQE   A+    P Y V
Sbjct: 123 ESLLGAIYLEHGLTVVREVILRLFGELLDTAPTLGAGLDWKSSLQELTAARGLGAPAYVV 182

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           T  +GPDHD  F+  V I       G+  +K+ AE  AAA   K
Sbjct: 183 TS-TGPDHDKEFSATVVIGEAEYGHGVGRTKKEAELKAAASAYK 225


>gi|34580889|ref|ZP_00142369.1| ribonuclease III [Rickettsia sibirica 246]
 gi|157828029|ref|YP_001494271.1| ribonuclease III [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165932727|ref|YP_001649516.1| ribonuclease III [Rickettsia rickettsii str. Iowa]
 gi|229586355|ref|YP_002844856.1| ribonuclease III [Rickettsia africae ESF-5]
 gi|166991034|sp|A8GQT8|RNC_RICRS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189043343|sp|B0BW84|RNC_RICRO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|259646551|sp|C3PMF3|RNC_RICAE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|28262274|gb|EAA25778.1| ribonuclease III [Rickettsia sibirica 246]
 gi|157800510|gb|ABV75763.1| ribonuclease III [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165907814|gb|ABY72110.1| ribonuclease III [Rickettsia rickettsii str. Iowa]
 gi|228021405|gb|ACP53113.1| Ribonuclease III [Rickettsia africae ESF-5]
          Length = 227

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 114/224 (50%), Gaps = 5/224 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59
             +  LEK + Y+F N+ LL +AL+H S+   ++    + YERLEFLGD +L L+I+ +L
Sbjct: 2   ESFEKLEKLLSYSFKNKELLIEALSHPSLRQHHEYKDDKDYERLEFLGDAVLNLVITEIL 61

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F +F +  EG L+   + LV  ET   V  +L L ++I ++            +   +  
Sbjct: 62  FRNFANYNEGNLAKIRSYLVCKETICMVGAKLTLKNYIIMTHGEEVAGGRDNLNNIENAT 121

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E+LIAA+YLD  IE     ++K W +          D KT LQEWA A     P Y++  
Sbjct: 122 EALIAAIYLDSNIETTHDIIEKLWAEFIKVQNLTDYDPKTALQEWAQASDHHLPIYRLIK 181

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           R G  H   FTV+V++       G   + + AE+ AA  +L R 
Sbjct: 182 REGASHSSTFTVLVKVKDYEQ-TGTGHAIKEAEKNAARSLLHRL 224


>gi|87311240|ref|ZP_01093362.1| ribonuclease III [Blastopirellula marina DSM 3645]
 gi|87285980|gb|EAQ77892.1| ribonuclease III [Blastopirellula marina DSM 3645]
          Length = 243

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 81/217 (37%), Positives = 120/217 (55%), Gaps = 3/217 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            S  E RIGY F  +SLL+ ALTH+S +    ES ERLEFLGD ILG ++   LF+ F  
Sbjct: 15  ISRCEVRIGYEFQEKSLLKSALTHASGASHRLESNERLEFLGDAILGRVVCEALFHSFPH 74

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+L+   + +VS  TC++++R L L  F+ V   +        + + ADV E++IAA
Sbjct: 75  FLEGDLTRIKSVVVSRLTCAKLSRVLGLEEFLIVGKGMSSSPSVPPS-LLADVFEAIIAA 133

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YLDGG + A  FV +  +     +  G+   + K+ LQ++A  + G TP Y +    GP
Sbjct: 134 IYLDGGPKPAEDFVLRNLEDEIELAVSGEAGANFKSALQQYAQREHGATPNYLLLDEKGP 193

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           DH   F V  +++G+        +K+ AEQ AA   L
Sbjct: 194 DHSKCFQVAAQVAGIRYVAAWGRNKKEAEQRAAQNAL 230


>gi|226365983|ref|YP_002783766.1| ribonuclease III [Rhodococcus opacus B4]
 gi|226244473|dbj|BAH54821.1| ribonuclease III [Rhodococcus opacus B4]
          Length = 252

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 108/227 (47%), Gaps = 9/227 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61
             +++L   +G      SLL  ALTH S ++      + ERLEFLGD +LG+ ++  L+ 
Sbjct: 14  EDHASLLAALGVEIE-PSLLTLALTHRSYAYENGGLPTNERLEFLGDSVLGVTVTEKLYL 72

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARE---LDLASFIRVSSDLRKDVCSFMTSIQADV 118
                 EG+L+    S+V+    ++VAR      L + + +             SI AD 
Sbjct: 73  AHPDKSEGDLAKIRASIVNMHALAEVARSLGEGGLGAHLLLGKGEEMTGGRDKPSILADG 132

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYK 176
           +ES++ A++L+ GI+ A   V   +     ++ +     D KT LQE    +    P Y+
Sbjct: 133 MESILGAIHLEHGIDTARRVVLDLFSDLLQRAPRLGAGLDWKTSLQELTAERGVGVPAYE 192

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +T  +GPDHD  FT  V + G     G+  SK+ AEQ AA+      
Sbjct: 193 ITA-TGPDHDKEFTATVIVGGKPLGVGIGRSKKEAEQKAASTAWNAL 238


>gi|111023481|ref|YP_706453.1| ribonuclease III [Rhodococcus jostii RHA1]
 gi|110823011|gb|ABG98295.1| ribonuclease III [Rhodococcus jostii RHA1]
          Length = 252

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 109/227 (48%), Gaps = 9/227 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61
             +++L   +G      SLL  ALTH S ++      + ERLEFLGD +LG+ ++  L+ 
Sbjct: 14  EDHASLLAALGVEIE-PSLLTLALTHRSYAYENGGLPTNERLEFLGDSVLGVTVTEKLYL 72

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVAR---ELDLASFIRVSSDLRKDVCSFMTSIQADV 118
                 EG+L+    S+V+    ++VAR   E  L + + +             SI AD 
Sbjct: 73  AHPDKSEGDLAKIRASIVNMHALAEVARTLGEGGLGAHLLLGKGEEMTGGRDKPSILADG 132

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYK 176
           +ES++ A++L+ GI+ A   V   +     ++ +     D KT LQE    +    P Y+
Sbjct: 133 MESILGAIHLEHGIDTARRVVLDLFSDLLQRAPRLGAGLDWKTSLQELTAERGVGVPAYE 192

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +T  +GPDHD  FT  V + G     G+  SK+ AEQ AA+      
Sbjct: 193 ITA-TGPDHDKEFTATVIVGGKPLGVGIGRSKKEAEQKAASTAWNAL 238


>gi|84500562|ref|ZP_00998811.1| Ribonuclease III [Oceanicola batsensis HTCC2597]
 gi|84391515|gb|EAQ03847.1| Ribonuclease III [Oceanicola batsensis HTCC2597]
          Length = 226

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 76/207 (36%), Positives = 112/207 (54%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           +        RIG+ F    LL +++THSS+S   ++  +RLEFLGDR+LGL+++  L   
Sbjct: 4   SADLQAFSSRIGHDFRRPELLVQSVTHSSVSSPTRDDNQRLEFLGDRVLGLVMAEALLAS 63

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
             +A EG+L+ RFN+LV  E C+ VARE+ L + +++    +        ++  D +E++
Sbjct: 64  DRAASEGQLAPRFNALVRKEACADVAREVGLGAVLKLGRSEQLSGGRRKQALLGDAMEAV 123

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           IAA+YLDGG   A   + + W  R  +     RDAKT LQEWA  +    P Y    R G
Sbjct: 124 IAAVYLDGGFAAARDMILRLWGARVAQVDVDARDAKTALQEWAQGRGLPPPSYIEVAREG 183

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209
           PDH P F +   +     AQ    SKR
Sbjct: 184 PDHAPEFRIEARLVTGETAQASAGSKR 210


>gi|51473232|ref|YP_066989.1| ribonuclease III [Rickettsia typhi str. Wilmington]
 gi|81390308|sp|Q68XY5|RNC_RICTY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|51459544|gb|AAU03507.1| RNase D [Rickettsia typhi str. Wilmington]
          Length = 227

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 79/224 (35%), Positives = 116/224 (51%), Gaps = 5/224 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLL 59
             +  LE  +GY+F N+ LL +AL+H S+     + Y + YERLEFLGD +L LLI+ +L
Sbjct: 2   ESFEKLETLLGYSFKNKELLIEALSHPSLRQYHEYKYDKDYERLEFLGDAVLNLLITEIL 61

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F +F++ KEG L+   + LV  ET   V  +L L  +I ++            +   +V 
Sbjct: 62  FKNFENYKEGNLAKIRSYLVCKETICIVGTKLALKDYIIMTHGEEVAGGRDNPNNIENVT 121

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E+LIAA+YLD  IE+    ++K W +          D KT LQEWA A     P Y++  
Sbjct: 122 EALIAAIYLDSNIEITHNIIEKLWAEFMKVQNLTDYDPKTALQEWAQASSNHLPIYRLIK 181

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           R G  H   FTV+V++           S + AE+ AA  +L R 
Sbjct: 182 REGAAHSSIFTVLVKVKDYEQ-ICTGYSIKEAEKKAARCLLHRL 224


>gi|94311354|ref|YP_584564.1| ribonuclease III [Cupriavidus metallidurans CH34]
 gi|189043335|sp|Q1LKN1|RNC_RALME RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|93355206|gb|ABF09295.1| RNase III [Cupriavidus metallidurans CH34]
          Length = 256

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 64/209 (30%), Positives = 101/209 (48%), Gaps = 6/209 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +    L++R+GY F+   LL++ALTH S      +  ERLEFLGD +L   ++ +LF  F
Sbjct: 1   MTLDALQQRLGYRFSKPELLQQALTHRS---HSAQHNERLEFLGDSVLNCAVADMLFGMF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  +   ++A+ L L+  +R+     K       SI AD +E+++
Sbjct: 58  GKLDEGDLSRVRANLVKQQALYEIAQMLQLSDALRLGEGELKSGGFRRPSILADALEAIV 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LD G + A   + K +      +      +DAKT LQE+        P+Y V    
Sbjct: 118 GAVFLDAGFDAARALIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYNVIATH 177

Query: 182 GPDHDPRFTVVVEISGLAPAQ-GMDCSKR 209
           G  H  +F V   +  L     G   S+R
Sbjct: 178 GAAHSQQFEVECIVPKLEVRVFGTGASRR 206


>gi|320533365|ref|ZP_08034057.1| ribonuclease III [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320134435|gb|EFW26691.1| ribonuclease III [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 264

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 70/196 (35%), Positives = 96/196 (48%), Gaps = 7/196 (3%)

Query: 19  NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           +  LL+ ALTH S +H      + ERLEFLGD +LG++++  L+       EG+L+    
Sbjct: 26  DTQLLDLALTHRSYAHENGGLPTNERLEFLGDSVLGIIVTEYLYRTHSEVPEGQLAKMRA 85

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           + VS    + VAR+L L  FI++             SI +D VE+LI A YL  G+E   
Sbjct: 86  ATVSEPALAAVARDLGLGEFIKLGKGEALSGGRDKDSILSDTVEALIGATYLTHGLEETR 145

Query: 137 TFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
           T V +    R L S + R    D KT LQE A       P Y+V   +GPDH   FT   
Sbjct: 146 TVVTRLV-SRFLDSARTRGAGLDWKTSLQELAAVHQLGNPVYEVAG-TGPDHQRVFTASA 203

Query: 194 EISGLAPAQGMDCSKR 209
            + G    QG   SK+
Sbjct: 204 IVDGEVLGQGTGSSKK 219


>gi|148244713|ref|YP_001219407.1| ribonuclease III [Candidatus Vesicomyosocius okutanii HA]
 gi|146326540|dbj|BAF61683.1| ribonuclease III [Candidatus Vesicomyosocius okutanii HA]
          Length = 221

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 72/220 (32%), Positives = 113/220 (51%), Gaps = 6/220 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             L+K+I Y F + SLL+ ALTH S   + + + ERLEFLGD ILG+ IS  L+  F   
Sbjct: 2   KKLQKKINYQFKDLSLLKLALTHRS---TGRNNNERLEFLGDSILGVAISKELYQRFPCV 58

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+LS   + L+  +T  Q+   L+L++ + + S   K       SIQAD VE++  A+
Sbjct: 59  DEGKLSRLRSHLIRGQTLVQLGTALELSNNLILGSGELKSGGYRRESIQADTVEAIFGAV 118

Query: 127 YLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
            LD   E     +   +K    ++      +D+KT+LQE+   +  + P+YK+   +G D
Sbjct: 119 LLDSNFETTNMVILGLFKVLLNSISPDDSLKDSKTQLQEYLQKRGNILPKYKLIDTTGKD 178

Query: 185 HDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223
           H+  F V   +       +    S + AEQ  A  +LK+ 
Sbjct: 179 HNAIFMVNCFLEDQKLQVKQSAKSIKKAEQFCAQILLKKL 218


>gi|329947035|ref|ZP_08294447.1| ribonuclease III [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328526846|gb|EGF53859.1| ribonuclease III [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 267

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 69/197 (35%), Positives = 98/197 (49%), Gaps = 7/197 (3%)

Query: 19  NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           +  LL+ ALTH S +H      + ERLEFLGD +LG++++  L+    +  EG+L+    
Sbjct: 26  DAGLLDLALTHRSYAHENGGLPTNERLEFLGDSVLGIIVTEYLYRTHATVPEGQLAKMRA 85

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           + VS    + VAR+L L  FI++             SI +D VE+LI A YL  G+E   
Sbjct: 86  ATVSEPALAAVARDLGLGEFIKLGKGEALSGGRDKDSILSDTVEALIGATYLTHGLEETR 145

Query: 137 TFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
           T V +    R L S + R    D KT LQE   A     P Y+V+  +GPDH   FT   
Sbjct: 146 TVVTRLV-SRFLDSARTRGAGLDWKTSLQELTAAHQLGNPGYEVSG-TGPDHQRVFTASA 203

Query: 194 EISGLAPAQGMDCSKRA 210
            + G    +G   SK+ 
Sbjct: 204 VVDGQVMGRGTGSSKKI 220


>gi|293394829|ref|ZP_06639119.1| ribonuclease III [Serratia odorifera DSM 4582]
 gi|291422580|gb|EFE95819.1| ribonuclease III [Serratia odorifera DSM 4582]
          Length = 204

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 66/189 (34%), Positives = 97/189 (51%), Gaps = 6/189 (3%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
           +ALTH S S  +    ERLEFLGD IL  +I+  L++ F    EG++S    +LV   T 
Sbjct: 3   QALTHRSASSKH---NERLEFLGDSILSFVIANALYHRFPRVDEGDMSRMRATLVRGNTL 59

Query: 85  SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
           +++ARE DL   +R+     K       SI AD VE+LI  ++LD  I+     +  +++
Sbjct: 60  AEMAREFDLGECLRLGPGELKSGGFRRESILADTVEALIGGVFLDSDIQTVERLILDWYR 119

Query: 145 QRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APA 201
            R   +  G  ++D KT LQE+   +    P Y V    G  HD  FT+  ++SGL  P 
Sbjct: 120 SRLDEISPGDKQKDPKTRLQEFLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLSEPV 179

Query: 202 QGMDCSKRA 210
            G   S+R 
Sbjct: 180 VGTGSSRRK 188


>gi|269302927|gb|ACZ33027.1| ribonuclease III [Chlamydophila pneumoniae LPCoLN]
          Length = 237

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 107/226 (47%), Gaps = 3/226 (1%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTL 58
             +  + +E ++ + F    LLE ALTH S  +      E  ERLEFLGD +LGL+++  
Sbjct: 3   PPIDITAIEAKLNFTFTQPKLLEIALTHPSYKNESAVQIEDSERLEFLGDAVLGLIVTEH 62

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF  F S  EG LS    SLV+A+ C +    L +  ++ +    +        S  A++
Sbjct: 63  LFLLFPSMDEGTLSTARASLVNAKACCRYTTTLGIGDYLLIGKGEKIQSERGRLSAYANL 122

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
            ES++ A+YLDGG+  A          R         + K  LQ++   +F V P Y+ T
Sbjct: 123 FESILGAVYLDGGLSPARKLTVPLLPPREEILPLMSGNPKNLLQQFTQKQFRVLPVYQST 182

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             +    +  + + V ++     +G   SK+ AE++AA + L   G
Sbjct: 183 AVTDAQGNVSYQIQVLVNQEVWGEGNASSKKEAEKIAAQQALDTYG 228


>gi|15617978|ref|NP_224262.1| ribonuclease III [Chlamydophila pneumoniae CWL029]
 gi|15835590|ref|NP_300114.1| ribonuclease III [Chlamydophila pneumoniae J138]
 gi|16752990|ref|NP_445263.1| ribonuclease III [Chlamydophila pneumoniae AR39]
 gi|7531191|sp|Q9Z9C7|RNC_CHLPN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|4376309|gb|AAD18207.1| Ribonuclease III [Chlamydophila pneumoniae CWL029]
 gi|7189635|gb|AAF38526.1| ribonuclease III [Chlamydophila pneumoniae AR39]
 gi|8978428|dbj|BAA98265.1| ribonuclease III [Chlamydophila pneumoniae J138]
          Length = 237

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 107/226 (47%), Gaps = 3/226 (1%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTL 58
             +  + +E ++ + F    LLE ALTH S  +      E  ERLEFLGD +LGL+++  
Sbjct: 3   PPIDITAIEAKLNFTFTQPKLLEIALTHPSYKNESAVQIEDSERLEFLGDAVLGLIVTEH 62

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF  F S  EG LS    SLV+A+ C +    L +  ++ +    +        S  A++
Sbjct: 63  LFLLFPSMDEGTLSTARASLVNAKACCRYTTMLGIGDYLLIGKGEKIQSERGRLSAYANL 122

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
            ES++ A+YLDGG+  A          R         + K  LQ++   +F V P Y+ T
Sbjct: 123 FESILGAVYLDGGLSPARKLTVPLLPPREEILPLMSGNPKNLLQQFTQKQFRVLPVYQST 182

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             +    +  + + V ++     +G   SK+ AE++AA + L   G
Sbjct: 183 AVTDAQGNVSYQIQVLVNQEVWGEGNASSKKEAEKIAAQQALDTYG 228


>gi|212702556|ref|ZP_03310684.1| hypothetical protein DESPIG_00579 [Desulfovibrio piger ATCC 29098]
 gi|212673997|gb|EEB34480.1| hypothetical protein DESPIG_00579 [Desulfovibrio piger ATCC 29098]
          Length = 243

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 107/225 (47%), Gaps = 6/225 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTL 58
           SA     +E+ + Y F+    +  ALTHSS ++ +   Q   ERLEFLGD +L L IS  
Sbjct: 12  SAADLERIERILDYHFSRPERVALALTHSSWANEHGLGQAHNERLEFLGDAVLELCISWE 71

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF  F  A+EG+++   + LV   + +Q ARE  +   +R+     +       ++ +DV
Sbjct: 72  LFTRFPQAREGDMTRVRSQLVGTTSLAQRARETGIDQLLRLGRGEEQQGGRSRDAVLSDV 131

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKS---GKFRRDAKTELQEWAHAKFGVTPEY 175
            E+++A++Y DGG   A   V + +     +        +D KT LQE + A F   P Y
Sbjct: 132 FEAVLASVYEDGGYAAAQKVVARIFGTLLDEVSVGKPKTKDFKTSLQERSVALFHDRPVY 191

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                 GP+H   FTV V +           S + AEQ AA   L
Sbjct: 192 TTLACEGPEHARHFTVQVSLPSGQQFTASGSSCKKAEQEAARLAL 236


>gi|189345713|ref|YP_001942242.1| Ribonuclease III [Chlorobium limicola DSM 245]
 gi|189339860|gb|ACD89263.1| Ribonuclease III [Chlorobium limicola DSM 245]
          Length = 273

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 62/210 (29%), Positives = 104/210 (49%), Gaps = 6/210 (2%)

Query: 18  ANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
              +L   ALTH S++H       ES +RLEFLGD +L ++IS  L+  F ++ EG+LS 
Sbjct: 51  NEPALYLTALTHRSVTHDASVPGTESNQRLEFLGDAVLDMVISEYLYRSFPNSAEGDLSS 110

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
               +V+ ++ +  A+ + L +++ +      +      S  AD  ESL  A+YLD G++
Sbjct: 111 NRAKIVNRKSLAGFAQTMGLGNYLIIGESADCNKIRTSESALADAFESLTGAIYLDKGLD 170

Query: 134 VAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
               FV K   +            + K+ L E+  +     P Y V  + G +H+  FT+
Sbjct: 171 AVRAFVMKQVIEHVDFKTIVASEHNYKSRLIEYTQSHHIPPPVYTVIAQDGAEHEKVFTI 230

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V  +G +  +G    K+ AEQ+AA E ++
Sbjct: 231 EVSCAGCSCGRGSAPRKKDAEQLAAKEAVE 260


>gi|166154508|ref|YP_001654626.1| ribonuclease III [Chlamydia trachomatis 434/Bu]
 gi|255348658|ref|ZP_05380665.1| ribonuclease III [Chlamydia trachomatis 70]
 gi|255503198|ref|ZP_05381588.1| ribonuclease III [Chlamydia trachomatis 70s]
 gi|301335768|ref|ZP_07224012.1| ribonuclease III [Chlamydia trachomatis L2tet1]
 gi|238687367|sp|B0B7L3|RNC_CHLT2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|165930496|emb|CAP03989.1| ribonuclease III [Chlamydia trachomatis 434/Bu]
 gi|289525336|emb|CBJ14812.1| ribonuclease III [Chlamydia trachomatis Sweden2]
 gi|296434887|gb|ADH17065.1| ribonuclease III [Chlamydia trachomatis E/150]
 gi|296438607|gb|ADH20760.1| ribonuclease III [Chlamydia trachomatis E/11023]
          Length = 231

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 65/221 (29%), Positives = 108/221 (48%), Gaps = 3/221 (1%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLL 59
            +    +E ++ + F++  LL  ALTH S  + +   +E  ERLEFLGD +LGL+++  L
Sbjct: 4   TVDIQAIESKLNFTFSHPRLLITALTHPSYRNEFPSAEEDSERLEFLGDAVLGLVVTEHL 63

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F  F +  EG LS    +LV+AE C +  ++L L   + +    +        S  A++ 
Sbjct: 64  FLLFPALNEGLLSTTRAALVNAEACFEYTQKLSLGEHLLIGRGEKMQSHRGKISAYANLF 123

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E+++ A+YLDGG+  A   +      +         + K  LQ++      V P YK   
Sbjct: 124 EAILGAVYLDGGLSPARQIIVPLLPDKESILPLMLVNPKNRLQQFTQQTLKVLPSYKALP 183

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
               D  P + V V ++G    +G   SK+ AE++AA + L
Sbjct: 184 WKSEDGSPGYHVQVFVNGDLWGEGFAGSKKEAEKLAAKQAL 224


>gi|15827877|ref|NP_302140.1| ribonuclease III [Mycobacterium leprae TN]
 gi|221230354|ref|YP_002503770.1| ribonuclease III [Mycobacterium leprae Br4923]
 gi|7531192|sp|O69469|RNC_MYCLE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|3150224|emb|CAA19196.1| ribonuclease III [Mycobacterium leprae]
 gi|13093430|emb|CAC30612.1| RNAse III [Mycobacterium leprae]
 gi|219933461|emb|CAR71754.1| RNAse III [Mycobacterium leprae Br4923]
          Length = 238

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 74/213 (34%), Positives = 106/213 (49%), Gaps = 8/213 (3%)

Query: 21  SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            LL  ALTH S ++ +    + ERLEFLGD +L L I+  LF+      EG+L+    S+
Sbjct: 19  ELLSLALTHRSYAYEHGGLPTNERLEFLGDAVLSLTITDELFHRHPDRSEGDLAKLRASV 78

Query: 79  VSAETCSQVARELD---LASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
           V+ +  + VAR L    L  ++ +         +  +SI AD +ESL+ A+YL  GIEVA
Sbjct: 79  VNTQALAYVARNLSDGGLGVYLLLGRGETNTGGADKSSILADGMESLLGAIYLHHGIEVA 138

Query: 136 GTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
              + + +      +       D KT LQE   A+    P Y VT  +GPDHD  FT VV
Sbjct: 139 RQVILRLFGTLLDAAPTLGAGLDWKTSLQELTAARGMGVPSYVVTS-TGPDHDKEFTAVV 197

Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
            +       G+  SK+ AEQ AA+   K   + 
Sbjct: 198 VVMDTEYGSGIGHSKKEAEQKAASAAWKALDVL 230


>gi|260828679|ref|XP_002609290.1| hypothetical protein BRAFLDRAFT_86799 [Branchiostoma floridae]
 gi|229294646|gb|EEN65300.1| hypothetical protein BRAFLDRAFT_86799 [Branchiostoma floridae]
          Length = 1490

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 70/230 (30%), Positives = 114/230 (49%), Gaps = 9/230 (3%)

Query: 2    SALRYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLL 59
            S  R +  E R G  F +  LL +A TH +   ++      +RLEFLGD ++ ++ S  L
Sbjct: 1195 SDERLTEFESRCGMEFKHVRLLARAFTHRTVGFNNLTLGHNQRLEFLGDSVMQMVSSEYL 1254

Query: 60   FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
            + HF    EG LS+  +SLV+  T + V+++L +  +I  S   R+   S      AD++
Sbjct: 1255 YKHFPDHHEGHLSLLRSSLVNNRTQALVSQDLGMEEYIISSDKARQGKLSLRQKTLADLM 1314

Query: 120  ESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVT 172
            E+ + ALY+D G+E    F++  +  R  +    +   D K++LQ+         K    
Sbjct: 1315 EAFMGALYVDQGLEYVCVFMNVCFFPRLREFIMNQEWNDPKSQLQQCCLTLRTEGKEPDI 1374

Query: 173  PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            P YK+  ++GP H  ++TV V   G     G+  S + AE  AA + LK 
Sbjct: 1375 PFYKILDKAGPSHARKYTVAVYFKGERIGTGVGSSIQQAEMAAARDALKN 1424



 Score = 99.0 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 47/203 (23%), Positives = 78/203 (38%), Gaps = 59/203 (29%)

Query: 1    MSALRY----STLEKRIGYAFANRSLLEKALT-------------HS--SISHSYQ---- 37
            M  LRY    + L++ +G  F +RSLLE ALT             H+  S+S+       
Sbjct: 992  MHYLRYHACLNELDQLLGSKFEDRSLLELALTHPSHHLNFGMNPDHARNSLSNCGMRQPK 1051

Query: 38   ------------------------------------ESYERLEFLGDRILGLLISTLLFN 61
                                                   ERLEFLGD ++  L S+ L+ 
Sbjct: 1052 YGDRRIHHVHTRKKGINTLINIMSRMGHDEETPSLINHNERLEFLGDAVVEFLTSSHLYF 1111

Query: 62   HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
             F   +EG L+    ++V  +  + +A++L L  F+  +        S +    A+ +E+
Sbjct: 1112 MFPDLEEGGLATYRTAIVQNQHLAVLAKKLRLDEFMLYAHGPDLCRESDLRHAMANCLEA 1171

Query: 122  LIAALYLDGGIEVAGTFVDKYWK 144
            LI A+Y+  G+E       +   
Sbjct: 1172 LIGAMYMQQGLEETKKLFCRLLF 1194


>gi|253999489|ref|YP_003051552.1| ribonuclease III [Methylovorus sp. SIP3-4]
 gi|313201514|ref|YP_004040172.1| ribonuclease III [Methylovorus sp. MP688]
 gi|253986168|gb|ACT51025.1| ribonuclease III [Methylovorus sp. SIP3-4]
 gi|312440830|gb|ADQ84936.1| ribonuclease III [Methylovorus sp. MP688]
          Length = 224

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 66/207 (31%), Positives = 96/207 (46%), Gaps = 6/207 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  + LE+ +G+ F N  LL +ALTH S       + ERLEFLGD +L  +I+  LF  F
Sbjct: 1   MSQTGLERLLGHDFTNGQLLTQALTHRS---HSARNNERLEFLGDGVLNCIIANQLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS     LV   T  ++A+ L L   +++     K       S+ AD +E++I
Sbjct: 58  SKLPEGDLSRLRAHLVKEPTLCEIAQRLQLGDMLKLGEGELKSGGWRRPSVLADALEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LD G   A   V + +     A+      +DAK+ LQE+   +    PEY VT   
Sbjct: 118 GAVFLDAGFIAAEALVVRLYTPLLEAIDPKSIGKDAKSLLQEYLQGRKIALPEYTVTATE 177

Query: 182 GPDHDPRFTVVVEISG-LAPAQGMDCS 207
           G  H   F V   I        G   S
Sbjct: 178 GEAHCQLFKVDCTIPKLKLVTHGEGSS 204


>gi|241763850|ref|ZP_04761895.1| Ribonuclease III [Acidovorax delafieldii 2AN]
 gi|241366894|gb|EER61308.1| Ribonuclease III [Acidovorax delafieldii 2AN]
          Length = 227

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 75/211 (35%), Positives = 109/211 (51%), Gaps = 6/211 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            S L+ R+ + F+N SLL++A+TH S S    +  ERLEFLGD +L L +++LL+     
Sbjct: 5   LSALQDRLQHHFSNASLLQRAITHRSFS---ADHNERLEFLGDSVLNLAVASLLYQRLSD 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    +LV  +T  Q+A  L ++  +R+     K       SI AD +E+LI A
Sbjct: 62  LPEGDLSRVRANLVKQDTLHQLALRLQVSDVLRLGEGESKSGGQNRPSILADALEALIGA 121

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YLD G   A   V + ++   +        +D KT LQEW   +    P Y V    G 
Sbjct: 122 VYLDAGYSRAEALVHRLFQGVEINPQMQAAAKDPKTALQEWLQGRKMKLPHYSVVATVGA 181

Query: 184 DHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQ 213
            H   F V  EI+ L  A+ G+  S+RA EQ
Sbjct: 182 AHRQTFDVECEIAELGLAERGIGGSRRAGEQ 212


>gi|238896018|ref|YP_002920754.1| ribonuclease III [Klebsiella pneumoniae NTUH-K2044]
 gi|238548336|dbj|BAH64687.1| ribonuclease III [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 204

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 65/190 (34%), Positives = 98/190 (51%), Gaps = 6/190 (3%)

Query: 24  EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83
           ++ALTH S S  +    ERLEFLGD IL  +I+  L++ F    EG++S    +LV   T
Sbjct: 2   QQALTHRSASSKH---NERLEFLGDSILSFVIANALYHRFPRVDEGDMSRMRATLVRGNT 58

Query: 84  CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143
            +++ARE +L   +R+     K       SI AD VE+LI  ++LD  I+     +  ++
Sbjct: 59  LAEIAREFELGECLRLGPGELKSGGFRRESILADTVEALIGGVFLDSDIQNVERLILSWY 118

Query: 144 KQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-AP 200
           + R   +  G  ++D KT LQE+   +    P Y V    G  HD  FT+  ++SGL  P
Sbjct: 119 QTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLSEP 178

Query: 201 AQGMDCSKRA 210
             G   S+R 
Sbjct: 179 VVGTGSSRRK 188


>gi|221201351|ref|ZP_03574390.1| ribonuclease III [Burkholderia multivorans CGD2M]
 gi|221208831|ref|ZP_03581829.1| ribonuclease III [Burkholderia multivorans CGD2]
 gi|221171287|gb|EEE03736.1| ribonuclease III [Burkholderia multivorans CGD2]
 gi|221178619|gb|EEE11027.1| ribonuclease III [Burkholderia multivorans CGD2M]
          Length = 406

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I
Sbjct: 58  GKLDEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADAFEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG E A   + + +      +      +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202


>gi|33241390|ref|NP_876331.1| ribonuclease III [Chlamydophila pneumoniae TW-183]
 gi|33235898|gb|AAP97988.1| ribonuclease III [Chlamydophila pneumoniae TW-183]
          Length = 237

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 107/226 (47%), Gaps = 3/226 (1%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTL 58
             +  + +E ++ + F    LLE ALTH S  +      E  ERLEFLGD +LGL+++  
Sbjct: 3   PPIDITAIEAKLNFTFTQPKLLEIALTHPSYKNESAVQIEDSERLEFLGDAVLGLIVTEH 62

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF  F S  EG LS    SLV+A+ C +    L +  ++ +    +        S  A++
Sbjct: 63  LFLLFPSMDEGTLSTARASLVNAKACCRYTTVLGIGDYLLIGKGEKIQSERGRLSAYANL 122

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
            ES++ A+YLDGG+  A          R         + K  LQ++   +F V P Y+ T
Sbjct: 123 FESILGAVYLDGGLSPARKLTVPLLPPREEILPLMSGNPKNLLQQFTQKQFRVLPVYQST 182

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             +    +  + + V ++     +G   SK+ AE++AA + L   G
Sbjct: 183 AVTDAQGNVSYQIQVLVNQEVWGEGNASSKKEAEKIAAQQALDTYG 228


>gi|221068688|ref|ZP_03544793.1| Ribonuclease III [Comamonas testosteroni KF-1]
 gi|264677118|ref|YP_003277024.1| ribonuclease III [Comamonas testosteroni CNB-2]
 gi|299530659|ref|ZP_07044074.1| ribonuclease III [Comamonas testosteroni S44]
 gi|220713711|gb|EED69079.1| Ribonuclease III [Comamonas testosteroni KF-1]
 gi|262207630|gb|ACY31728.1| ribonuclease III [Comamonas testosteroni CNB-2]
 gi|298721175|gb|EFI62117.1| ribonuclease III [Comamonas testosteroni S44]
          Length = 227

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 76/209 (36%), Positives = 105/209 (50%), Gaps = 6/209 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            L++R+ + FAN +LL++A+TH S S    ++ ERLEFLGD +L L IS+LL+    S  
Sbjct: 7   ALQQRLQHQFANPALLQRAITHRSFS---ADNNERLEFLGDSVLSLAISSLLYAKLASMP 63

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG+LS    +LV   T  ++A +L L   +R+     K       SI AD VE+LI A+Y
Sbjct: 64  EGDLSRVRANLVKEGTLHKIALKLQLPDLLRLGEGEAKSGGKQRPSILADAVEALIGAVY 123

Query: 128 LDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           LD G       V   ++   +        +D KT LQE    K    P+Y V   SG  H
Sbjct: 124 LDAGFAAGEKVVHHLFEGVDINPHMRAADKDPKTALQELLQGKRMKLPQYHVVEISGAAH 183

Query: 186 DPRFTVVVEISG-LAPAQGMDCSKRAAEQ 213
              F V   I+     AQG   S+R  EQ
Sbjct: 184 KQTFKVECTIAEWNISAQGSGASRRMGEQ 212


>gi|167041438|gb|ABZ06190.1| putative RNase3 domain protein [uncultured marine microorganism
           HF4000_006O13]
 gi|167041995|gb|ABZ06732.1| putative RNase3 domain protein [uncultured marine microorganism
           HF4000_141E02]
          Length = 224

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 72/217 (33%), Positives = 106/217 (48%), Gaps = 7/217 (3%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           E+R  Y F +  LL+ ALTH S      ++ ERLEFLGD  L L+IS LL+  +    EG
Sbjct: 9   EQRFHYRFKDDILLQTALTHRS---HSVDNNERLEFLGDAALDLVISELLYQSYSEQTEG 65

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
            LS   +SLV   T +++A+ELD+  ++ +             S+ +D +E++I A++LD
Sbjct: 66  YLSRMRSSLVKGNTLAELAKELDVGGYLILGKGENTSGGRERLSLLSDTLEAMIGAIFLD 125

Query: 130 GGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           GG       + K +  R  AL      +D K+ LQE         P Y +    G DH+ 
Sbjct: 126 GGYVAVKNVIIKIFDSRIQALDPKSEHKDHKSVLQEKLQGVKQGLPVYSLVRSVG-DHNK 184

Query: 188 RFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            F V   I  G    Q    + R AEQ AA++ L+  
Sbjct: 185 TFVVECSIKSGEIVTQASGKTLRVAEQKAASKALQAM 221


>gi|332529447|ref|ZP_08405406.1| ribonuclease III [Hylemonella gracilis ATCC 19624]
 gi|332041093|gb|EGI77460.1| ribonuclease III [Hylemonella gracilis ATCC 19624]
          Length = 223

 Score =  224 bits (572), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 73/209 (34%), Positives = 109/209 (52%), Gaps = 6/209 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            L+  +   F + +LL++ALTH S      +  ERLEFLGD +L L ++ LL+    +  
Sbjct: 2   RLQDHLQRPFTDAALLQRALTHRSF---CADHNERLEFLGDSVLNLAVADLLYQRLHALP 58

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG+LS    +LV  ET  Q+A EL L+  +R+     +   +   SI AD +E+LI A+Y
Sbjct: 59  EGDLSRIRANLVKQETLHQLAMELGLSDLLRLGEGELRSGGNKRPSILADALEALIGAVY 118

Query: 128 LDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           LD G   A   V   +++  +        +D KTELQEW  A+    P+Y+V   +G  H
Sbjct: 119 LDAGYAAAQALVHHLYEKVEVTPQMQASAKDPKTELQEWLQARKLKLPQYRVVATTGAAH 178

Query: 186 DPRFTVVVEISGLAPAQ-GMDCSKRAAEQ 213
              F V  E+S     + G+  S+RA EQ
Sbjct: 179 RQTFDVECEVSEFQLTERGIGGSRRAGEQ 207


>gi|161525340|ref|YP_001580352.1| ribonuclease III [Burkholderia multivorans ATCC 17616]
 gi|189349923|ref|YP_001945551.1| ribonuclease III [Burkholderia multivorans ATCC 17616]
 gi|160342769|gb|ABX15855.1| Ribonuclease III [Burkholderia multivorans ATCC 17616]
 gi|189333945|dbj|BAG43015.1| ribonuclease III [Burkholderia multivorans ATCC 17616]
          Length = 406

 Score =  224 bits (572), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I
Sbjct: 58  GKLDEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADAFEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG E A   + + +      +      +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202


>gi|295690019|ref|YP_003593712.1| ribonuclease III [Caulobacter segnis ATCC 21756]
 gi|295431922|gb|ADG11094.1| ribonuclease III [Caulobacter segnis ATCC 21756]
          Length = 231

 Score =  224 bits (572), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 91/204 (44%), Positives = 124/204 (60%), Gaps = 3/204 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE+RIG+ F +R LLE+ALTH+S+    ++    E LEF+GDR+LGLL +  L   F  A
Sbjct: 11  LERRIGHQFEDRELLERALTHASVGDGAKKVRDNEVLEFIGDRVLGLLAAEALAQRFPKA 70

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           KEGEL+ R N+LVS ETC++VAR  +L   +R+S+   K       SI A   E+L+AAL
Sbjct: 71  KEGELAPRLNALVSRETCARVARVAELGPALRLSASSSKIGGRETESILAGATEALMAAL 130

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           Y DGG++ A       W     ++G+   RD KT LQEWA  K    P Y+V  R+GPDH
Sbjct: 131 YQDGGLDAARRVFLSLWADEFDRAGEGRPRDPKTALQEWAQGKGRPLPTYRVLDRTGPDH 190

Query: 186 DPRFTVVVEISGLAPAQGMDCSKR 209
            P FTV V ++G+ PA     S++
Sbjct: 191 APVFTVEVVVAGVDPAMAKGKSRQ 214


>gi|255506876|ref|ZP_05382515.1| ribonuclease III [Chlamydia trachomatis D(s)2923]
          Length = 231

 Score =  224 bits (572), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 65/221 (29%), Positives = 108/221 (48%), Gaps = 3/221 (1%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLL 59
            +    +E ++ + F++  LL  ALTH S  + +   +E  ERLEFLGD +LGL+++  L
Sbjct: 4   TVDIQAIESKLNFTFSHPKLLITALTHPSYRNEFPSAEEDSERLEFLGDAVLGLVVTEHL 63

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F  F +  EG LS    +LV+AE C +  ++L L   + +    +        S  A++ 
Sbjct: 64  FLLFPALNEGLLSTTRAALVNAEACFEYTQKLSLGEHLLIGRGEKMQSHRGKISAYANLF 123

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E+++ A+YLDGG+  A   +      +         + K  LQ++      V P YK   
Sbjct: 124 EAILGAVYLDGGLSPARQIIVPLLPDKESILPLMLVNPKNRLQQFTQQTLKVLPSYKALP 183

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
               D  P + V V ++G    +G   SK+ AE++AA + L
Sbjct: 184 WKSEDGSPGYHVQVFVNGDLWGEGFAGSKKEAEKLAAKQAL 224


>gi|255066864|ref|ZP_05318719.1| ribonuclease III [Neisseria sicca ATCC 29256]
 gi|255048939|gb|EET44403.1| ribonuclease III [Neisseria sicca ATCC 29256]
          Length = 239

 Score =  224 bits (572), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 64/219 (29%), Positives = 114/219 (52%), Gaps = 6/219 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++ ++GY F + +LL++ALTH S    + ++ ER EF+GD IL   ++ +LF+ F  
Sbjct: 11  HAAIQNKLGYHFKDTALLQQALTHRSY---HAKNNERFEFVGDSILNYTVAKMLFDAFPK 67

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 68  LTEGELSRLRASLVNEGVLAEIALEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +  D     A   V   + +R  ++      +D KT LQE   A+    P+Y++  + G 
Sbjct: 128 VSFDADFAEAEKVVRHLFAERVKRADFKTQGKDNKTALQEALQARRLALPKYRIEEQIGH 187

Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221
            +D  F +  ++  L    +    S++ AEQ AA E L+
Sbjct: 188 ANDSMFLISCDLGELGFICKAQGSSRKVAEQQAAKEALQ 226


>gi|166155383|ref|YP_001653638.1| ribonuclease III [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|238687467|sp|B0BBS8|RNC_CHLTB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|165931371|emb|CAP06943.1| ribonuclease III [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 231

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 66/221 (29%), Positives = 109/221 (49%), Gaps = 3/221 (1%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLL 59
            +    +E ++ + F++  LL  ALTHSS  + +   +E  ERLEFLGD +LGL+++  L
Sbjct: 4   TVDIQAIESKLNFTFSHPRLLITALTHSSYRNEFPSAEEDSERLEFLGDAVLGLVVTEHL 63

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F  F +  EG LS    +LV+AE C +  ++L L   + +    +        S  A++ 
Sbjct: 64  FLLFPALNEGLLSTTRAALVNAEACFEYTQKLSLGEHLLIGRGEKMQSHRGKISAYANLF 123

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E+++ A+YLDGG+  A   +      +         + K  LQ++      V P YK   
Sbjct: 124 EAILGAVYLDGGLSPARQIIVPLLPDKESILPLMLVNPKNRLQQFTQQTLKVLPSYKALP 183

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
               D  P + V V ++G    +G   SK+ AE++AA + L
Sbjct: 184 WKSEDGSPGYHVQVFVNGDLWGEGFAGSKKEAEKLAAKQAL 224


>gi|219848618|ref|YP_002463051.1| Ribonuclease III [Chloroflexus aggregans DSM 9485]
 gi|254807244|sp|B8GAM6|RNC_CHLAD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|219542877|gb|ACL24615.1| Ribonuclease III [Chloroflexus aggregans DSM 9485]
          Length = 229

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 62/210 (29%), Positives = 98/210 (46%), Gaps = 7/210 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ------ESYERLEFLGDRILGLLIST 57
            R + LE+ +G  F +R LL+ AL H S+ +            ERLEFLGD +L  + +T
Sbjct: 3   ERLAELERALGITFRDRKLLQTALMHRSLFNEQPHLLSNLSDNERLEFLGDSVLHFVTTT 62

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF  F    E  L+    +LVS +  ++ A  L+L  +  +S           + + AD
Sbjct: 63  WLFQQFPHQNESTLTSWRAALVSTKGLAECAATLNLGQYAFLSRGEDTPKGRQRSKLLAD 122

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           + E++I A+YLD G+E A  F++ +  +R         D  T LQE   ++    P+Y +
Sbjct: 123 LFEAVIGAIYLDQGLEAARAFIEPFLHERIGTLQTAVLDPTTRLQEIVQSRHKQLPKYYL 182

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
               GPDH   + + V + G     G   S
Sbjct: 183 IDERGPDHQREYVMAVTVEGHEY-TGTGPS 211


>gi|221214088|ref|ZP_03587061.1| ribonuclease III [Burkholderia multivorans CGD1]
 gi|221166265|gb|EED98738.1| ribonuclease III [Burkholderia multivorans CGD1]
          Length = 402

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I
Sbjct: 58  GKLDEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADAFEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG E A   + + +      +      +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202


>gi|262277162|ref|ZP_06054955.1| ribonuclease III [alpha proteobacterium HIMB114]
 gi|262224265|gb|EEY74724.1| ribonuclease III [alpha proteobacterium HIMB114]
          Length = 225

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 121/221 (54%), Gaps = 1/221 (0%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M     + +EK +   F N+SL+E+A TH S S +   + ERLEFLGDR+LGL+I++ L 
Sbjct: 1   MKKNDLAQVEKILEIKFNNKSLIEQAFTHKSKSVNINNNNERLEFLGDRVLGLVIASYLN 60

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           +++    EG L  +  SLV+ ETCS++   L++  F+ +S   +K   +    I  D+ E
Sbjct: 61  DNYPKDSEGVLDKKLASLVNKETCSKIISSLEIDRFLSLSE-AQKQNKAGNKKILGDLCE 119

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           S+I A+++D G E    F+ K WK+    + +   D KT+LQE++   +   P YK    
Sbjct: 120 SIIGAVFMDKGFEQTKKFILKIWKENLKNTTQVFIDPKTKLQEYSLKLYKKLPVYKYISN 179

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           SGP H P F V V I           SK+ AE  AA ++++
Sbjct: 180 SGPSHKPNFRVSVSIEQSKSFVATGTSKKNAETNAAKKLIE 220


>gi|260576288|ref|ZP_05844280.1| ribonuclease III [Rhodobacter sp. SW2]
 gi|259021556|gb|EEW24860.1| ribonuclease III [Rhodobacter sp. SW2]
          Length = 231

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 77/195 (39%), Positives = 107/195 (54%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           +        RIG+ F    LL +A+THSSIS   +   +RLEFLGDR+LGL+++  L   
Sbjct: 4   SAELQAFCGRIGHVFRQPELLLRAVTHSSISSKTRPDNQRLEFLGDRVLGLVMAEALLTA 63

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
             +A EG+L+ RFN+LV  E C+ VAR+L L   +++             ++  D +E++
Sbjct: 64  DTAASEGQLAPRFNALVRKEACADVARDLGLGEVMKLGRSEMMSGGRRKDALLGDALEAV 123

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           IAA+YLD G + A   V + W  R        RDAKT LQEWA A+    P Y    R G
Sbjct: 124 IAAVYLDSGFDAARGLVLRLWGGRIGAVQSDARDAKTSLQEWAQARGLPPPAYIELGRDG 183

Query: 183 PDHDPRFTVVVEISG 197
           PDH P+FTV V +  
Sbjct: 184 PDHQPQFTVEVRLEN 198


>gi|149913470|ref|ZP_01902003.1| 4'-phosphopantetheinyl transferase [Roseobacter sp. AzwK-3b]
 gi|149812590|gb|EDM72419.1| 4'-phosphopantetheinyl transferase [Roseobacter sp. AzwK-3b]
          Length = 227

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 78/206 (37%), Positives = 116/206 (56%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           +      E+R+G+ F   +LL +A+THSS++   ++  +RLEFLGDR+LGL+++  L   
Sbjct: 4   SAELKAFEERLGHRFEQSALLVRAVTHSSMASPTRDDNQRLEFLGDRVLGLVMAEALLER 63

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
             SA+EG L+ RFN+LV  E C+ VARE+ L   +++             ++  D +E++
Sbjct: 64  DRSAEEGLLAPRFNALVRKEACADVAREIALGDVLKLGRSEMLSGGRRKQALLGDAMEAV 123

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           IAA+Y D G +VA   V + W +R     +  RDAKT LQEWA A+    P Y  T RSG
Sbjct: 124 IAAVYRDAGFDVAKAVVLRLWGKRIDSVKEDARDAKTALQEWAQARGQTPPAYVETARSG 183

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSK 208
           PDH P+FT+   +           SK
Sbjct: 184 PDHAPQFTIEARLQNGEVETASAGSK 209


>gi|167948160|ref|ZP_02535234.1| ribonuclease III [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 225

 Score =  224 bits (571), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 72/205 (35%), Positives = 105/205 (51%), Gaps = 6/205 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            S+L + +GY F N +LL++ALTH S+     ++ ER EFLGD ILG +I+  LF  F+ 
Sbjct: 5   LSSLCRALGYEFHNPALLQQALTHRSVG---GKNNERFEFLGDAILGFVIADALFEQFER 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A EG+LS   +SLV  ET +++AR L L   +R+     +       SI AD VE+++AA
Sbjct: 62  ASEGQLSRLRSSLVKRETLAKIARGLKLGDHLRLGPGELRSGGQTRDSILADAVEAILAA 121

Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YLD         + + ++     L     ++D KT LQE   A+    P Y+V   +G 
Sbjct: 122 IYLDSDYSTTRRVILQIFESLLTGLDLNTQQKDPKTRLQEHLQARKIGLPSYQVIDITGD 181

Query: 184 DHDPRFTVVVEISGLAPAQ-GMDCS 207
            H   FTV      L     G   S
Sbjct: 182 QHAQTFTVKCRSEALEQESDGSGSS 206


>gi|257791118|ref|YP_003181724.1| ribonuclease III [Eggerthella lenta DSM 2243]
 gi|317488154|ref|ZP_07946728.1| ribonuclease III [Eggerthella sp. 1_3_56FAA]
 gi|257475015|gb|ACV55335.1| ribonuclease III [Eggerthella lenta DSM 2243]
 gi|316912741|gb|EFV34276.1| ribonuclease III [Eggerthella sp. 1_3_56FAA]
          Length = 281

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 81/223 (36%), Positives = 112/223 (50%), Gaps = 4/223 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNH 62
           + +  ++ +GY FA+  LL  A+TH S +   S + SYERLEFLGD ILG +++T+ F+ 
Sbjct: 10  KLAVAQEILGYRFADEQLLLSAITHPSATEGKSVKYSYERLEFLGDSILGAIVATIAFDR 69

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L+    +LVS  + S VA  L  A  I   S         + S   +V E++
Sbjct: 70  FHDLDEGGLTRIKVALVSGASLSDVAERLGFADVIVFGSSETGTGRRGLHSALENVYEAV 129

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +AAL+LDGGIE A  FV      R      +   + K+ LQE      G+TP YK+    
Sbjct: 130 VAALFLDGGIEAAEGFVRATLIPRMSADMAREPENPKSALQEKLQED-GITPTYKLVETQ 188

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP HD  F   V       A+G   +K+ AE  AA   L R G
Sbjct: 189 GPPHDRTFVAQVFAGSQGLARGTGRTKKEAESQAAKSTLARLG 231


>gi|253997000|ref|YP_003049064.1| ribonuclease III [Methylotenera mobilis JLW8]
 gi|253983679|gb|ACT48537.1| ribonuclease III [Methylotenera mobilis JLW8]
          Length = 230

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 70/210 (33%), Positives = 101/210 (48%), Gaps = 6/210 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +    L +R+ + F N SLL +ALTH S +    ++ ERLEFLGD  L  +I+  L+  F
Sbjct: 1   MSKQELLRRLSHQFVNESLLTQALTHRSYA---GQNNERLEFLGDGALNFIIAHQLYQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS     LV   T S++A  L+L   + +     K       SI AD +E++I
Sbjct: 58  PKLAEGDLSRLRAQLVKEATLSEIALSLNLGDALLLGEGELKSAGWRRPSILADALEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+YLD G E A TFV   +  K   +      +D K+ LQE   ++    PEY V   S
Sbjct: 118 GAVYLDSGFEAAQTFVLGLYAGKLETIDPKVIDKDPKSLLQELLQSRKIAVPEYTVIHTS 177

Query: 182 GPDHDPRFTVVVEISG-LAPAQGMDCSKRA 210
           G  H+ +F V   +        G   S+R 
Sbjct: 178 GEAHEQKFVVECLVEKHQIRTVGEGRSRRI 207


>gi|186475606|ref|YP_001857076.1| ribonuclease III [Burkholderia phymatum STM815]
 gi|184192065|gb|ACC70030.1| Ribonuclease III [Burkholderia phymatum STM815]
          Length = 441

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 65/205 (31%), Positives = 102/205 (49%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 9   MPLSPLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 65

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD +E+++
Sbjct: 66  GKLDEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADTLEAIL 125

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG + A T + + +      +      +DAKT LQE+        P Y V    
Sbjct: 126 GAIFLDGGFDAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIPLPTYTVVATH 185

Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 186 GAAHNQQFEVECTVPKLDVKVSGSG 210


>gi|284799722|ref|ZP_05984688.2| ribonuclease III [Neisseria subflava NJ9703]
 gi|284797336|gb|EFC52683.1| ribonuclease III [Neisseria subflava NJ9703]
          Length = 296

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 65/219 (29%), Positives = 112/219 (51%), Gaps = 6/219 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           +  ++KR+GY F N  LL++ALTH S +    +  ER EF+GD IL   ++ +LF+ F  
Sbjct: 11  HRAIQKRLGYEFRNMELLQQALTHRSYN---AKHNERFEFVGDSILNYSVARMLFDAFPK 67

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    +LV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 68  LSEGELSRMRAALVNEGVLAEIALEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +  D     A   V   + +R  ++     ++D+KT LQE   A+    P+Y++  ++  
Sbjct: 128 VSFDADFSAAEKVVRHLFAERVKRADLNIGKKDSKTALQEALQARRFALPKYRIEEQAEQ 187

Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221
             D  F +  ++  L         S++ AEQ AA E L+
Sbjct: 188 TADAMFVISCDLGELGFICNARGSSRKVAEQKAACEALE 226


>gi|148284924|ref|YP_001249014.1| ribonuclease III [Orientia tsutsugamushi str. Boryong]
 gi|146740363|emb|CAM80798.1| ribonuclease III [Orientia tsutsugamushi str. Boryong]
          Length = 251

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 75/218 (34%), Positives = 121/218 (55%), Gaps = 2/218 (0%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +   L+  IGY F +  LL +ALTH SI+ + Y ++Y+RLEFLGD IL L+IS  LF +F
Sbjct: 23  KLDALQSEIGYNFNSIDLLIEALTHPSINQYGYTKNYQRLEFLGDVILNLVISETLFKNF 82

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+L+     LV  E+   +A++++L  +I ++++  K       +   + +E++I
Sbjct: 83  SHYNEGKLAKSRAFLVCNESICLIAQKINLHKYIIMTANEEKCGGRSNKNNIENTMEAVI 142

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
            A+YLDGGI V    V+  WK            D K+ LQEW+ +K    P Y ++ ++G
Sbjct: 143 GAVYLDGGIHVIKDIVNSLWKVLIKDHELYLIADPKSALQEWSQSKNFGIPTYTLSSKTG 202

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             H P F V+V++  L P  G   + + A++ AA  +L
Sbjct: 203 QSHSPLFEVMVKVGRLEPQYGKGTTIKTAQKNAAQLML 240


>gi|317121789|ref|YP_004101792.1| ribonuclease III [Thermaerobacter marianensis DSM 12885]
 gi|315591769|gb|ADU51065.1| ribonuclease III [Thermaerobacter marianensis DSM 12885]
          Length = 329

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 73/222 (32%), Positives = 106/222 (47%), Gaps = 7/222 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
              + +  G       L  +ALTH+S    + +      ERLEFLGD +L L ++  +F 
Sbjct: 74  LQRVAELTGTEPRRPELFLEALTHASYRAEHPDTAGADNERLEFLGDAVLNLCVTDHIFR 133

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +    EGELS    + V AET +  A+ L L   +R+             S+ AD  E+
Sbjct: 134 TYPQRPEGELSKLRAATVRAETLAVTAQRLGLGELLRLGRGEEATGGRQRPSVLADAFEA 193

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++AA+YL  G+E A  F+ +       R  +S     D KT LQE +       P Y+V 
Sbjct: 194 VVAAVYLQEGLEGARAFILRTLGDEIRRLAESSGACDDPKTALQELSRRLGLGEPSYRVI 253

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             SGP+HDPR+TV V + G    Q +  SK+ AE+ AA   L
Sbjct: 254 DASGPEHDPRYTVEVRVGGRPLGQAVGRSKKVAEREAARIAL 295


>gi|221194650|ref|ZP_03567707.1| ribonuclease III [Atopobium rimae ATCC 49626]
 gi|221185554|gb|EEE17944.1| ribonuclease III [Atopobium rimae ATCC 49626]
          Length = 243

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 78/209 (37%), Positives = 98/209 (46%), Gaps = 3/209 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFN 61
            R    EK   + F  R L+E ALTH S         SYERLEFLGD ILG +++T LF 
Sbjct: 5   ERIRAAEKICNHVFKRRDLIEAALTHPSAVEDKPVSASYERLEFLGDSILGAIVATDLFE 64

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +    EGEL+    SLVS  T S VA  L +   I      R      M S   +V ES
Sbjct: 65  RYPEMDEGELTRLKISLVSGHTLSLVAEALGIGPLIITGVSERGTGGRGMRSALENVYES 124

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           ++ ALYLD G E    FV +        +  +     K+ LQE   A    TPEY++   
Sbjct: 125 IVGALYLDAGYEPTHEFVIRTLAPHISPALAERSVSPKSRLQEAVQANGKSTPEYELVSE 184

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           SGP H P F  VV + G    +G   SK+
Sbjct: 185 SGPAHTPTFISVVSVDGCKVGRGQGHSKK 213


>gi|139436972|ref|ZP_01771132.1| Hypothetical protein COLAER_00105 [Collinsella aerofaciens ATCC
           25986]
 gi|133776619|gb|EBA40439.1| Hypothetical protein COLAER_00105 [Collinsella aerofaciens ATCC
           25986]
          Length = 241

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 75/208 (36%), Positives = 105/208 (50%), Gaps = 3/208 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
           R +  ++ +G+ F N+ LL  ALTH S         SYERLEFLGD ILG +++  LF  
Sbjct: 6   RLTRAQEILGHEFNNKVLLRAALTHPSAVEGQPVSASYERLEFLGDSILGAVVARSLFES 65

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +    EG+L+    SLVS  T S+V+ EL +   I   +         + S   +V ESL
Sbjct: 66  YPEFDEGKLTRLKVSLVSGATLSEVSHELGIDDIIIFGASETGTGARGLHSALENVYESL 125

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           + ALYLD G +VA  F+ +  K     +  +   + K+ LQE   A     P YK+    
Sbjct: 126 VGALYLDAGWDVAAEFIHRTLKPHLASERAEHPANPKSFLQECVQADGHEPPAYKLVGSE 185

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           GP H P FT VV I G+   +G   SK+
Sbjct: 186 GPAHAPTFTAVVLIDGIRQGRGTGSSKK 213


>gi|254245911|ref|ZP_04939232.1| Ribonuclease III [Burkholderia cenocepacia PC184]
 gi|124870687|gb|EAY62403.1| Ribonuclease III [Burkholderia cenocepacia PC184]
          Length = 350

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 19  MPSSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 75

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I
Sbjct: 76  GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 135

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG E A   + + +      +      +DAKT LQE+        P Y V    
Sbjct: 136 GAVFLDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 195

Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 196 GAAHNQQFEVECTVPKLDVKVSGSG 220


>gi|189184858|ref|YP_001938643.1| ribonuclease III [Orientia tsutsugamushi str. Ikeda]
 gi|189181629|dbj|BAG41409.1| ribonuclease III [Orientia tsutsugamushi str. Ikeda]
          Length = 246

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 76/218 (34%), Positives = 122/218 (55%), Gaps = 2/218 (0%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  TL+  IGY F +  LL +ALTH SI+ + Y ++Y+RLEFLGD IL L+IS  LF +F
Sbjct: 18  KLDTLQSEIGYNFNSIDLLIEALTHPSINQYGYTKNYQRLEFLGDVILNLVISETLFKNF 77

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+L+     LV  E+   +A++++L  +I ++++  K       +   + +E++I
Sbjct: 78  SHYNEGKLAKSRAFLVCNESICLIAQKINLHKYIIMTANEEKCGGRSNKNNIENTMEAVI 137

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
            A+YLDGGI V    V+  WK            D K+ LQEW+ +K    P Y ++ ++G
Sbjct: 138 GAVYLDGGIHVIKDIVNSLWKVLIKDHELYLIADPKSALQEWSQSKNFGIPTYTLSSKTG 197

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             H P F V+V++  L P  G   + + A++ AA  +L
Sbjct: 198 QSHSPLFEVMVKVGRLEPQYGKGTTIKTAQKNAAQLML 235


>gi|307150264|ref|YP_003885648.1| ribonuclease III [Cyanothece sp. PCC 7822]
 gi|306980492|gb|ADN12373.1| ribonuclease III [Cyanothece sp. PCC 7822]
          Length = 228

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 95/206 (46%), Gaps = 12/206 (5%)

Query: 16  AFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            F N+ L   ALTH S  + +    E  ERLEFLGD IL  +    L+  +    E +L+
Sbjct: 6   TFKNQQLWLCALTHRSYINEHSGINEHNERLEFLGDAILAFVAGEFLYQRYPHLSEAQLT 65

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                LV     ++ A +L +   +R+     KD      ++ +D  E++I A YLD G+
Sbjct: 66  RLRAKLVDETQLARFAVQLGIGELMRLGKGAIKDGGRENPALLSDTFEAIIGAYYLDAGV 125

Query: 133 EVAGTFVDKYWK---------QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +    FV   ++         Q  + + K   DAK   Q+WA A+F   PEY +   SGP
Sbjct: 126 DAVRNFVHPLFQSVADILMVSQSEVATTKNLLDAKNRFQQWALAEFSQNPEYIIIEESGP 185

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKR 209
           DH   FT  V++ G+    G    K+
Sbjct: 186 DHAKEFTAQVKVQGIVYGVGRGRRKQ 211


>gi|107022210|ref|YP_620537.1| ribonuclease III [Burkholderia cenocepacia AU 1054]
 gi|116689156|ref|YP_834779.1| ribonuclease III [Burkholderia cenocepacia HI2424]
 gi|105892399|gb|ABF75564.1| RNAse III [Burkholderia cenocepacia AU 1054]
 gi|116647245|gb|ABK07886.1| RNAse III [Burkholderia cenocepacia HI2424]
          Length = 409

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPSSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I
Sbjct: 58  GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG E A   + + +      +      +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202


>gi|254184210|ref|ZP_04890800.1| ribonuclease III [Burkholderia pseudomallei 1655]
 gi|184214741|gb|EDU11784.1| ribonuclease III [Burkholderia pseudomallei 1655]
          Length = 467

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I
Sbjct: 58  GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG E A   + + +      +      +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDIKVSGSG 202


>gi|15605018|ref|NP_219802.1| ribonuclease III [Chlamydia trachomatis D/UW-3/CX]
 gi|76789019|ref|YP_328105.1| ribonuclease III [Chlamydia trachomatis A/HAR-13]
 gi|237802720|ref|YP_002887914.1| ribonuclease III [Chlamydia trachomatis B/Jali20/OT]
 gi|237804642|ref|YP_002888796.1| ribonuclease III [Chlamydia trachomatis B/TZ1A828/OT]
 gi|255311099|ref|ZP_05353669.1| ribonuclease III [Chlamydia trachomatis 6276]
 gi|255317400|ref|ZP_05358646.1| ribonuclease III [Chlamydia trachomatis 6276s]
 gi|7531193|sp|O84299|RNC_CHLTR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|90101618|sp|Q3KM65|RNC_CHLTA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|3328712|gb|AAC67890.1| Ribonuclease III [Chlamydia trachomatis D/UW-3/CX]
 gi|76167549|gb|AAX50557.1| ribonuclease III [Chlamydia trachomatis A/HAR-13]
 gi|231272942|emb|CAX09853.1| ribonuclease III [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231273954|emb|CAX10746.1| ribonuclease III [Chlamydia trachomatis B/Jali20/OT]
 gi|296435814|gb|ADH17988.1| ribonuclease III [Chlamydia trachomatis G/9768]
 gi|296436739|gb|ADH18909.1| ribonuclease III [Chlamydia trachomatis G/11222]
 gi|296437674|gb|ADH19835.1| ribonuclease III [Chlamydia trachomatis G/11074]
 gi|297140173|gb|ADH96931.1| ribonuclease III [Chlamydia trachomatis G/9301]
 gi|297748426|gb|ADI50972.1| Ribonuclease III [Chlamydia trachomatis D-EC]
 gi|297749306|gb|ADI51984.1| Ribonuclease III [Chlamydia trachomatis D-LC]
          Length = 231

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 65/221 (29%), Positives = 109/221 (49%), Gaps = 3/221 (1%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLL 59
            +    +E ++ + F++  LL  ALTH S  + +   +E  ERLEFLGD +LGL+++  L
Sbjct: 4   TVDIQAIESKLNFTFSHPRLLITALTHPSYRNEFPSAEEDSERLEFLGDAVLGLVVTEHL 63

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F  F +  EG LS    +LV+AE C +  ++L L   + +    +        S  A+++
Sbjct: 64  FLLFPALNEGLLSTTRAALVNAEACFEYTQKLSLGEHLLIGRGEKMQSHRGKISAYANLL 123

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E+++ A+YLDGG+  A   +      +         + K  LQ++      V P YK   
Sbjct: 124 EAILGAVYLDGGLSPARQIIVPLLPDKESILPLMLVNPKNRLQQFTQQTLKVLPSYKALP 183

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
               D  P + V V ++G    +G   SK+ AE++AA + L
Sbjct: 184 WKSEDGSPGYHVQVFVNGDLWGEGFAGSKKEAEKLAAKQAL 224


>gi|294787661|ref|ZP_06752905.1| ribonuclease III [Simonsiella muelleri ATCC 29453]
 gi|294483954|gb|EFG31637.1| ribonuclease III [Simonsiella muelleri ATCC 29453]
          Length = 235

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 68/222 (30%), Positives = 112/222 (50%), Gaps = 10/222 (4%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            L++ I + F N +L+++ALTH S S    ++YERLEF+GD IL  +++ +L+  F    
Sbjct: 12  KLQQEINFLFKNPNLIQQALTHRSYS---SQNYERLEFIGDSILNYVVAKMLYEAFPKLP 68

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG LS     LV   T + +AR+L +   + +     K       SI AD +E+L AA+ 
Sbjct: 69  EGRLSPLRAQLVKEATLADIARQLHIGDALFLGVGELKSGGHDRASILADALEALFAAIS 128

Query: 128 LDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           LD     +   + K + Q+   L + +  +DAKT LQE    +    P+Y++  ++G  +
Sbjct: 129 LDSDFATSEKIIRKIFSQKIKELDTSQSAKDAKTSLQELLQGQKLTLPKYRIDKQTGEGN 188

Query: 186 DPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKREGIW 226
           D  F V  ++  L         S+R AEQ  A + +    +W
Sbjct: 189 DAIFDVSCDLGELGKIFYAQASSRRTAEQECAKQAI----VW 226


>gi|126438815|ref|YP_001059800.1| ribonuclease III [Burkholderia pseudomallei 668]
 gi|126218308|gb|ABN81814.1| ribonuclease III [Burkholderia pseudomallei 668]
          Length = 467

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I
Sbjct: 58  GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG E A   + + +      +      +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDIKVSGSG 202


>gi|241668007|ref|ZP_04755585.1| ribonuclease III [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254876541|ref|ZP_05249251.1| ribonuclease III [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254842562|gb|EET20976.1| ribonuclease III [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 230

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 72/221 (32%), Positives = 111/221 (50%), Gaps = 9/221 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            YS L K +GY+F N +LL +ALTH S     +++YERLEFLGD ILG +I+ +L+  F 
Sbjct: 4   EYSRLYKILGYSFKNYTLLVRALTHRS---KTKKNYERLEFLGDSILGFVIAEVLYMEFP 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+LS   + LV   T + +A    L  +I + +            I  DV E++I 
Sbjct: 61  DLAEGKLSQIRSKLVKGVTLANLALNFKLDEYIILGASE--QGGHKREKILEDVFEAIIG 118

Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRS 181
           A+YLD         +  ++K     L     + +D+K++LQE         PEY +    
Sbjct: 119 AIYLDSDFATVKKVIVNWYKPVISTLNLDDVKVKDSKSKLQEILLQNGLSLPEYSIETID 178

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221
           G DH+  FTV    + L    +    S++ AEQ AA ++++
Sbjct: 179 GKDHEQEFTVKALSNDLNIKVRAKGTSRKKAEQKAAEKMIQ 219


>gi|238788224|ref|ZP_04632019.1| Ribonuclease 3 [Yersinia frederiksenii ATCC 33641]
 gi|238723811|gb|EEQ15456.1| Ribonuclease 3 [Yersinia frederiksenii ATCC 33641]
          Length = 204

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 66/189 (34%), Positives = 95/189 (50%), Gaps = 6/189 (3%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
           +ALTH S S  +    ERLEFLGD IL  +I+  L+  F    EG++S    +LV   T 
Sbjct: 3   QALTHRSASSKH---NERLEFLGDSILSFVIANELYRRFPRVDEGDMSRMRATLVRGNTL 59

Query: 85  SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
           +++ARE DL   +R+     K       SI AD VE+LI  ++LD  I      +  +++
Sbjct: 60  AEMAREFDLGECLRLGPGELKSGGFRRESILADTVEALIGGVFLDSDIHTIERLILDWYR 119

Query: 145 QRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APA 201
            R   +  G  ++D KT LQE+   +    P Y V    G  HD  FT+  ++SGL  P 
Sbjct: 120 SRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLNEPV 179

Query: 202 QGMDCSKRA 210
            G   S+R 
Sbjct: 180 IGTGSSRRK 188


>gi|238793773|ref|ZP_04637394.1| Ribonuclease 3 [Yersinia intermedia ATCC 29909]
 gi|238726837|gb|EEQ18370.1| Ribonuclease 3 [Yersinia intermedia ATCC 29909]
          Length = 204

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 65/189 (34%), Positives = 97/189 (51%), Gaps = 6/189 (3%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
           +ALTH S +  +    ERLEFLGD IL  +I+  L++ F    EG++S    +LV   T 
Sbjct: 3   QALTHRSANSKH---NERLEFLGDSILSFVIANELYHRFPRVDEGDMSRMRATLVRGNTL 59

Query: 85  SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
           +++ARE DL   +R+     K       SI AD VE+LI  ++LD  I +    +  +++
Sbjct: 60  AEMAREFDLGECLRLGPGELKSGGFRRESILADTVEALIGGIFLDSDIHMIERLILDWYR 119

Query: 145 QRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APA 201
            R   +  G  ++D KT LQE+   +    P Y V    G  HD  FT+  ++SGL  P 
Sbjct: 120 SRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLNEPV 179

Query: 202 QGMDCSKRA 210
            G   S+R 
Sbjct: 180 IGTGSSRRK 188


>gi|167903627|ref|ZP_02490832.1| ribonuclease III [Burkholderia pseudomallei NCTC 13177]
          Length = 467

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I
Sbjct: 58  GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG E A   + + +      +      +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDIKVSGSG 202


>gi|76811515|ref|YP_334276.1| ribonuclease III [Burkholderia pseudomallei 1710b]
 gi|167739551|ref|ZP_02412325.1| ribonuclease III [Burkholderia pseudomallei 14]
 gi|254258167|ref|ZP_04949221.1| ribonuclease III [Burkholderia pseudomallei 1710a]
 gi|76580968|gb|ABA50443.1| ribonuclease III [Burkholderia pseudomallei 1710b]
 gi|254216856|gb|EET06240.1| ribonuclease III [Burkholderia pseudomallei 1710a]
          Length = 467

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I
Sbjct: 58  GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG E A   + + +      +      +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDIKVSGSG 202


>gi|167627437|ref|YP_001677937.1| ribonuclease III [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|189043314|sp|B0TXH8|RNC_FRAP2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|167597438|gb|ABZ87436.1| Ribonuclease III [Francisella philomiragia subsp. philomiragia ATCC
           25017]
          Length = 230

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 72/221 (32%), Positives = 111/221 (50%), Gaps = 9/221 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            YS L K +GY+F N +LL +ALTH S     +++YERLEFLGD ILG +I+ +L+  F 
Sbjct: 4   EYSRLYKILGYSFKNYTLLVRALTHRS---KTKKNYERLEFLGDSILGFVIAEVLYMEFP 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+LS   + LV   T + +A    L  +I + +            I  DV E++I 
Sbjct: 61  DLAEGKLSQIRSKLVKGVTLANLALNFKLDEYIILGASE--QGGHKREKILEDVFEAIIG 118

Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRS 181
           A+YLD         +  ++K     L     + +D+K++LQE         PEY +    
Sbjct: 119 AIYLDSDFATVKKVIVNWYKPVISTLNLDDVKVKDSKSKLQEILLQNGLSLPEYSIETID 178

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221
           G DH+  FTV    + L    +    S++ AEQ AA ++++
Sbjct: 179 GKDHEQEFTVKALSNDLNIEVRAKGTSRKKAEQKAAEKMIQ 219


>gi|170732444|ref|YP_001764391.1| ribonuclease III [Burkholderia cenocepacia MC0-3]
 gi|169815686|gb|ACA90269.1| Ribonuclease III [Burkholderia cenocepacia MC0-3]
          Length = 409

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPSSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I
Sbjct: 58  GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG E A   + + +      +      +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202


>gi|332187768|ref|ZP_08389502.1| ribonuclease III [Sphingomonas sp. S17]
 gi|332012118|gb|EGI54189.1| ribonuclease III [Sphingomonas sp. S17]
          Length = 235

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 88/206 (42%), Positives = 118/206 (57%), Gaps = 3/206 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S L +  G A  + +   +ALTH S      E+YERLEFLGDR+LGL+++  L+  F + 
Sbjct: 20  SWLTQIFGRAPQDSAPFHRALTHGS---QAAENYERLEFLGDRVLGLIMAEWLWEQFPNE 76

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+LS R NSLV+   C+ VAR+L +   +R+    R D  S   ++  DV+E+LI A 
Sbjct: 77  PEGQLSRRLNSLVTGPVCADVARDLGVRDHLRLGKQARDDGASDSDNVLGDVMEALIGAW 136

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           Y + G++ A  FV K W  R    GK  +  K+ LQEWA A     PEY+VT RSGP H 
Sbjct: 137 YREAGLDAARAFVRKAWGDRVHSQGKAPQHPKSALQEWAAAHNRKAPEYEVTDRSGPHHA 196

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAE 212
           PRFTV V I   A A     +K+ AE
Sbjct: 197 PRFTVTVRIGRTAEASASGANKQEAE 222


>gi|269978187|ref|ZP_06185137.1| ribonuclease III [Mobiluncus mulieris 28-1]
 gi|306818562|ref|ZP_07452285.1| ribonuclease III [Mobiluncus mulieris ATCC 35239]
 gi|307700841|ref|ZP_07637866.1| ribonuclease III [Mobiluncus mulieris FB024-16]
 gi|269933696|gb|EEZ90280.1| ribonuclease III [Mobiluncus mulieris 28-1]
 gi|304648735|gb|EFM46037.1| ribonuclease III [Mobiluncus mulieris ATCC 35239]
 gi|307613836|gb|EFN93080.1| ribonuclease III [Mobiluncus mulieris FB024-16]
          Length = 269

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 60/201 (29%), Positives = 100/201 (49%), Gaps = 8/201 (3%)

Query: 19  NRSLLEKALTHSSISHSYQES-----YERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           +  LL  A+TH S SH + ++      ERLEFLGD +L ++++  L+ +F    EG L+ 
Sbjct: 35  DPDLLVLAMTHRSFSHEHGKTGSRGTNERLEFLGDAVLQIIVTEYLYRNFPDEPEGTLAQ 94

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
              + VS    ++VAR++ L  ++R+     +       SI +D +E+LI A +L  G+ 
Sbjct: 95  MRAATVSQTPLAEVARKIHLGEYLRLGVGEDRQGGRDKDSILSDTLEALIGATFLSCGLS 154

Query: 134 VAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
           V    V+++ ++    + +     D KT LQE   A       Y+V   +GPDH   F+ 
Sbjct: 155 VTRVVVERHLRRFLRNAPRRAVTLDWKTTLQELLSAADLGEVTYEVVA-TGPDHQKHFSA 213

Query: 192 VVEISGLAPAQGMDCSKRAAE 212
              + G    +G   SK+ AE
Sbjct: 214 QALVEGENWGEGQGSSKKIAE 234


>gi|330815986|ref|YP_004359691.1| Ribonuclease III [Burkholderia gladioli BSR3]
 gi|327368379|gb|AEA59735.1| Ribonuclease III [Burkholderia gladioli BSR3]
          Length = 403

 Score =  223 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPQSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I
Sbjct: 58  SKLDEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADAFEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG E A   + + +      +      +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDIKVSGSG 202


>gi|217420723|ref|ZP_03452228.1| ribonuclease III [Burkholderia pseudomallei 576]
 gi|237813195|ref|YP_002897646.1| ribonuclease III [Burkholderia pseudomallei MSHR346]
 gi|217396135|gb|EEC36152.1| ribonuclease III [Burkholderia pseudomallei 576]
 gi|237506043|gb|ACQ98361.1| ribonuclease III [Burkholderia pseudomallei MSHR346]
          Length = 467

 Score =  223 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I
Sbjct: 58  GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG E A   + + +      +      +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDIKVSGSG 202


>gi|238784187|ref|ZP_04628200.1| Ribonuclease 3 [Yersinia bercovieri ATCC 43970]
 gi|238796735|ref|ZP_04640241.1| Ribonuclease 3 [Yersinia mollaretii ATCC 43969]
 gi|238714896|gb|EEQ06895.1| Ribonuclease 3 [Yersinia bercovieri ATCC 43970]
 gi|238719466|gb|EEQ11276.1| Ribonuclease 3 [Yersinia mollaretii ATCC 43969]
          Length = 204

 Score =  223 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 66/189 (34%), Positives = 96/189 (50%), Gaps = 6/189 (3%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
           +ALTH S S  +    ERLEFLGD IL  +I+  L+  F    EG++S    +LV   T 
Sbjct: 3   QALTHRSASSKH---NERLEFLGDSILSFVIANELYRRFPRVDEGDMSRMRATLVRGNTL 59

Query: 85  SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
           +++ARE DL   +R+     K       SI AD VE+LI  ++LD  I +    +  +++
Sbjct: 60  AEMAREFDLGECLRLGPGELKSGGFRRESILADTVEALIGGIFLDSDIHMIERLILDWYR 119

Query: 145 QRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APA 201
            R   +  G  ++D KT LQE+   +    P Y V    G  HD  FT+  ++SGL  P 
Sbjct: 120 SRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLNEPV 179

Query: 202 QGMDCSKRA 210
            G   S+R 
Sbjct: 180 IGTGSSRRK 188


>gi|53720035|ref|YP_109021.1| ribonuclease III [Burkholderia pseudomallei K96243]
 gi|167816752|ref|ZP_02448432.1| ribonuclease III [Burkholderia pseudomallei 91]
 gi|167895244|ref|ZP_02482646.1| ribonuclease III [Burkholderia pseudomallei 7894]
 gi|167919873|ref|ZP_02506964.1| ribonuclease III [Burkholderia pseudomallei BCC215]
 gi|52210449|emb|CAH36432.1| ribonuclease III [Burkholderia pseudomallei K96243]
          Length = 467

 Score =  223 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I
Sbjct: 58  GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG E A   + + +      +      +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDIKVSGSG 202


>gi|134277308|ref|ZP_01764023.1| ribonuclease III [Burkholderia pseudomallei 305]
 gi|134250958|gb|EBA51037.1| ribonuclease III [Burkholderia pseudomallei 305]
          Length = 467

 Score =  223 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I
Sbjct: 58  GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG E A   + + +      +      +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDIKVSGSG 202


>gi|227494679|ref|ZP_03924995.1| ribonuclease III [Actinomyces coleocanis DSM 15436]
 gi|226831861|gb|EEH64244.1| ribonuclease III [Actinomyces coleocanis DSM 15436]
          Length = 256

 Score =  223 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 64/204 (31%), Positives = 96/204 (47%), Gaps = 5/204 (2%)

Query: 19  NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           +  LL  ALTH S +      E  ERLEFLGD +L ++++  L+ ++  + E  LS    
Sbjct: 32  DPELLILALTHRSFAFEVGNIEPNERLEFLGDSVLSIIVTEYLYKNYPQSSEANLSRMRG 91

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           ++VS +T SQVAR + L  FI +             SI  D+ E++I A YL  G+E   
Sbjct: 92  AIVSEKTLSQVARNIRLGDFILLGKGENLTGGRDRDSILCDMTEAMIGATYLSHGLEATR 151

Query: 137 TFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
             V+ + +    ++ +  +  D KT LQE+        P Y+     GPDH   F   V 
Sbjct: 152 RIVEYHLRPFLERAVELGKSSDYKTTLQEYCAEASLGEPIYEAEG-FGPDHARYFIATVT 210

Query: 195 ISGLAPAQGMDCSKRAAEQVAAAE 218
           + G     G   SK+ A+  AA  
Sbjct: 211 VGGELVGHGQASSKKGAKSEAARA 234


>gi|68536283|ref|YP_250988.1| ribonuclease III [Corynebacterium jeikeium K411]
 gi|90101621|sp|Q4JUY7|RNC_CORJK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|68263882|emb|CAI37370.1| ribonuclease III [Corynebacterium jeikeium K411]
          Length = 244

 Score =  223 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 65/208 (31%), Positives = 99/208 (47%), Gaps = 6/208 (2%)

Query: 21  SLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            LL  ALTH S ++   +  + ERLEFLGD +LGL ++  L+  F    E ++S   + +
Sbjct: 36  DLLRLALTHRSFANENGHLPNNERLEFLGDAVLGLAVAEQLYRQFPERAESDISKMRSGV 95

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138
           V+    + VAR L +  +I +             SI AD VES++ A+YL  G EVA   
Sbjct: 96  VNMYALADVARRLGMGDYILLGRGEMLTGGKDKHSILADSVESMLGAIYLHHGFEVARAT 155

Query: 139 VDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
           V + + ++  ++       D KT L E         P Y+V    GP+HD  F   V I 
Sbjct: 156 VLRLFAEKITEAPTTGLTMDWKTVLLEKLSDMKLPLPTYEVRGE-GPEHDKTFYATVTIE 214

Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            L    G   +K+ AE  AA + +++  
Sbjct: 215 DLV-THGEGHTKKVAEHAAAKQAVQKLN 241


>gi|256827009|ref|YP_003150968.1| ribonuclease III [Cryptobacterium curtum DSM 15641]
 gi|256583152|gb|ACU94286.1| ribonuclease III [Cryptobacterium curtum DSM 15641]
          Length = 279

 Score =  223 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 77/223 (34%), Positives = 112/223 (50%), Gaps = 4/223 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFN 61
            +    ++ +GY F++   L  A+TH S       + SYERLEFLGD ILG +++   F+
Sbjct: 9   EKLDRAQEVLGYRFSDEHFLLSAITHPSAVEGMPVKFSYERLEFLGDSILGAVVADAAFH 68

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F    EG L+    SLV+  + SQVA EL  A FI             + S   +V E+
Sbjct: 69  RFPDLDEGGLTRIKVSLVAGSSLSQVANELGFADFIIFGQSEAGTGRRGLHSALENVYEA 128

Query: 122 LIAALYLDGGIEVAGTFVDK-YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           ++AALYLDGG+EVA +F+ +      ++   +   + K+ LQE      G+TP YK+   
Sbjct: 129 VVAALYLDGGMEVARSFIVQTLLGYMSIDMAREPENPKSALQEKLQED-GITPTYKLIET 187

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            GP HD  F   V     A A+G+  +K+ AE  AA   L   
Sbjct: 188 QGPPHDRTFVAAVYAGLQALARGVGRTKKEAESKAAQTALSHL 230


>gi|289643138|ref|ZP_06475267.1| ribonuclease III [Frankia symbiont of Datisca glomerata]
 gi|289507030|gb|EFD28000.1| ribonuclease III [Frankia symbiont of Datisca glomerata]
          Length = 272

 Score =  223 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 67/208 (32%), Positives = 99/208 (47%), Gaps = 9/208 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           L   +G    +  LLE ALTH S ++      + ERLEFLGD +L L+++  LFN     
Sbjct: 14  LRAALGV-PVDVDLLELALTHRSYAYEQGGLPTNERLEFLGDSVLSLVVTDALFNRHPDL 72

Query: 67  KEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            EG+L+ +  S+V+    ++VAR L    +  ++ +             SI AD +E+LI
Sbjct: 73  PEGQLAKQRASVVNMRALAEVARTLGEKGIGPYLLLGRGEETTGGRDKASILADTLEALI 132

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+YL  G+  A  FV + +      +       D KT LQE   +     PEY+V    
Sbjct: 133 GAVYLSSGLGSASEFVHRLFDPLLDVAAGRGAGLDWKTSLQERTASLLLGPPEYEV-DEF 191

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           GPDH  RFT    ++G     G   SK+
Sbjct: 192 GPDHAKRFTARAVVAGRVLGHGDGGSKK 219


>gi|330860319|emb|CBX70633.1| ribonuclease 3 [Yersinia enterocolitica W22703]
          Length = 204

 Score =  223 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 66/189 (34%), Positives = 94/189 (49%), Gaps = 6/189 (3%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
           +ALTH S S  +    ERLEFLGD IL  +I+  L+  F    EG++S    +LV   T 
Sbjct: 3   QALTHRSASSKH---NERLEFLGDSILSFVIANELYRRFPRVDEGDMSRMRATLVRGNTL 59

Query: 85  SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
           +++ARE DL   +R+     K       SI AD VE+LI  ++LD  I      +  ++ 
Sbjct: 60  AEMAREFDLGECLRLGPGELKSGGFRRESILADTVEALIGGIFLDSDIHTIERLILAWYH 119

Query: 145 QRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APA 201
            R   +  G  ++D KT LQE+   +    P Y V    G  HD  FT+  ++SGL  P 
Sbjct: 120 SRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLNEPV 179

Query: 202 QGMDCSKRA 210
            G   S+R 
Sbjct: 180 IGTGSSRRK 188


>gi|172040468|ref|YP_001800182.1| ribonuclease III [Corynebacterium urealyticum DSM 7109]
 gi|171851772|emb|CAQ04748.1| ribonuclease III [Corynebacterium urealyticum DSM 7109]
          Length = 245

 Score =  223 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 110/226 (48%), Gaps = 6/226 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           S   ++ L +  G   ++  +L  ALTH S +H      + ERLEFLGD +LGL ++  L
Sbjct: 18  SKHDHAPLLEAWGIELSD-EMLRLALTHRSFAHENDNVPNNERLEFLGDAVLGLSVAEQL 76

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  F    E ++S     +V+    + +AR L L  +I +     K       SI AD V
Sbjct: 77  YTQFPQRSESDISKMRAGVVNMYALAGLARNLGLGEYILLGRGEMKTDGQDKDSILADTV 136

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKV 177
           E+++ A+YL+ G  VA   V + +K    K+       D KT +QE         PEY+V
Sbjct: 137 EAILGAIYLEHGFAVAKATVLRLFKSMIDKAPTVGLTMDWKTTVQERLREHDLPMPEYEV 196

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           T  SGP+HD  F   +++ G    +G   +K+ AE  AA  +++  
Sbjct: 197 TS-SGPEHDKAFFATLKLDGKERTRGQGRTKKEAEHQAARAMVEEL 241


>gi|126454458|ref|YP_001067087.1| ribonuclease III [Burkholderia pseudomallei 1106a]
 gi|167825159|ref|ZP_02456630.1| ribonuclease III [Burkholderia pseudomallei 9]
 gi|167846656|ref|ZP_02472164.1| ribonuclease III [Burkholderia pseudomallei B7210]
 gi|167911876|ref|ZP_02498967.1| ribonuclease III [Burkholderia pseudomallei 112]
 gi|242317956|ref|ZP_04816972.1| ribonuclease III [Burkholderia pseudomallei 1106b]
 gi|254191245|ref|ZP_04897749.1| ribonuclease III [Burkholderia pseudomallei Pasteur 52237]
 gi|254195715|ref|ZP_04902141.1| ribonuclease III [Burkholderia pseudomallei S13]
 gi|254296871|ref|ZP_04964324.1| ribonuclease III [Burkholderia pseudomallei 406e]
 gi|126228100|gb|ABN91640.1| ribonuclease III [Burkholderia pseudomallei 1106a]
 gi|157808000|gb|EDO85170.1| ribonuclease III [Burkholderia pseudomallei 406e]
 gi|157938917|gb|EDO94587.1| ribonuclease III [Burkholderia pseudomallei Pasteur 52237]
 gi|169652460|gb|EDS85153.1| ribonuclease III [Burkholderia pseudomallei S13]
 gi|242141195|gb|EES27597.1| ribonuclease III [Burkholderia pseudomallei 1106b]
          Length = 467

 Score =  223 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I
Sbjct: 58  GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG E A   + + +      +      +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDIKVSGSG 202


>gi|255994063|ref|ZP_05427198.1| ribonuclease III [Eubacterium saphenum ATCC 49989]
 gi|255993731|gb|EEU03820.1| ribonuclease III [Eubacterium saphenum ATCC 49989]
          Length = 252

 Score =  223 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 117/228 (51%), Gaps = 9/228 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSI-----SHSYQESYERLEFLGDRILGLLISTLL 59
               LE +I Y F++R+LL  ALTH S+     +   + + +RLE+LGD IL L+I  LL
Sbjct: 3   NLDALETKINYKFSDRNLLITALTHVSMLGKVHNMDRKSTNQRLEYLGDAILYLVIGELL 62

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F       EG L+   +++V+  + S++A++LDL   I + S   K +     +I AD  
Sbjct: 63  FIKRPDYDEGNLTKARSNIVNNHSLSEMAKKLDLGRHIEMDSSTEKHMGRRNEAILADTF 122

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVT--PEY 175
           E+L+ A++LD G E    F++K + +R  ++  G+ + D KT LQE  HA        +Y
Sbjct: 123 EALMGAIFLDAGYEKTHEFINKLFIKRIEEAATGEAKADYKTRLQECVHACGITNYYIKY 182

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                 G  H   F +   ++    ++G+  SK+ A+Q AA    +  
Sbjct: 183 HTISEKGDQHCKTFRIGAYLNNTKLSEGVGKSKKEAQQNAARLFFENM 230


>gi|256851300|ref|ZP_05556689.1| ribonuclease III [Lactobacillus jensenii 27-2-CHN]
 gi|260660724|ref|ZP_05861639.1| ribonuclease III [Lactobacillus jensenii 115-3-CHN]
 gi|282933255|ref|ZP_06338642.1| ribonuclease III [Lactobacillus jensenii 208-1]
 gi|297206169|ref|ZP_06923564.1| ribonuclease III [Lactobacillus jensenii JV-V16]
 gi|256616362|gb|EEU21550.1| ribonuclease III [Lactobacillus jensenii 27-2-CHN]
 gi|260548446|gb|EEX24421.1| ribonuclease III [Lactobacillus jensenii 115-3-CHN]
 gi|281302759|gb|EFA94974.1| ribonuclease III [Lactobacillus jensenii 208-1]
 gi|297149295|gb|EFH29593.1| ribonuclease III [Lactobacillus jensenii JV-V16]
          Length = 230

 Score =  223 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 74/229 (32%), Positives = 116/229 (50%), Gaps = 10/229 (4%)

Query: 1   MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55
           M + ++   L +  G  F N +LLE+A THSS  + + +    +YE+LEFLGD +L L +
Sbjct: 1   MVSTKFKNYLFEEYGIKFKNETLLEEAFTHSSYVNEHPKESAGNYEKLEFLGDAVLELAV 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S  L+ HF S  EG+L+   +++V  E  S  A E    + I +     K       ++ 
Sbjct: 61  SDYLYRHFPSLNEGQLTRLRSNIVRTEGFSGFAIECGFPAEINLGRGEEKTGARERKTLL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTP 173
            DV E+   AL+LD G++    F+ K      + SG+F   RD KT+LQE       +  
Sbjct: 121 EDVFEAFNGALFLDQGMDAVQKFL-KLTVYPLIDSGEFTDSRDYKTDLQELLQVNGAIKI 179

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           EY+V   +    +  F V + + G   ++G   +K+AAEQVAA   L +
Sbjct: 180 EYQVLEETKLPSN--FKVALFVEGKKISEGSGHNKKAAEQVAAKLALIK 226


>gi|53725351|ref|YP_102339.1| ribonuclease III [Burkholderia mallei ATCC 23344]
 gi|121599423|ref|YP_993770.1| ribonuclease III [Burkholderia mallei SAVP1]
 gi|124385463|ref|YP_001028764.1| ribonuclease III [Burkholderia mallei NCTC 10229]
 gi|126450086|ref|YP_001081328.1| ribonuclease III [Burkholderia mallei NCTC 10247]
 gi|167000779|ref|ZP_02266586.1| ribonuclease III [Burkholderia mallei PRL-20]
 gi|238562760|ref|ZP_00439921.2| ribonuclease III [Burkholderia mallei GB8 horse 4]
 gi|254178423|ref|ZP_04885078.1| ribonuclease III [Burkholderia mallei ATCC 10399]
 gi|254199232|ref|ZP_04905598.1| ribonuclease III [Burkholderia mallei FMH]
 gi|254205539|ref|ZP_04911891.1| ribonuclease III [Burkholderia mallei JHU]
 gi|254357706|ref|ZP_04973979.1| ribonuclease III [Burkholderia mallei 2002721280]
 gi|52428774|gb|AAU49367.1| ribonuclease III/hypothetical protein, fusion [Burkholderia mallei
           ATCC 23344]
 gi|121228233|gb|ABM50751.1| ribonuclease III [Burkholderia mallei SAVP1]
 gi|124293483|gb|ABN02752.1| ribonuclease III/hypothetical protein [Burkholderia mallei NCTC
           10229]
 gi|126242956|gb|ABO06049.1| ribonuclease III [Burkholderia mallei NCTC 10247]
 gi|147748828|gb|EDK55902.1| ribonuclease III [Burkholderia mallei FMH]
 gi|147752982|gb|EDK60047.1| ribonuclease III [Burkholderia mallei JHU]
 gi|148026833|gb|EDK84854.1| ribonuclease III [Burkholderia mallei 2002721280]
 gi|160699462|gb|EDP89432.1| ribonuclease III [Burkholderia mallei ATCC 10399]
 gi|238522001|gb|EEP85448.1| ribonuclease III [Burkholderia mallei GB8 horse 4]
 gi|243063329|gb|EES45515.1| ribonuclease III [Burkholderia mallei PRL-20]
          Length = 467

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I
Sbjct: 58  GKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG E A   + + +      +      +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDIKVSGSG 202


>gi|238854774|ref|ZP_04645104.1| ribonuclease III [Lactobacillus jensenii 269-3]
 gi|260664006|ref|ZP_05864859.1| ribonuclease III [Lactobacillus jensenii SJ-7A-US]
 gi|282933852|ref|ZP_06339200.1| ribonuclease III [Lactobacillus jensenii 208-1]
 gi|238832564|gb|EEQ24871.1| ribonuclease III [Lactobacillus jensenii 269-3]
 gi|260561892|gb|EEX27861.1| ribonuclease III [Lactobacillus jensenii SJ-7A-US]
 gi|281301941|gb|EFA94195.1| ribonuclease III [Lactobacillus jensenii 208-1]
          Length = 230

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 75/229 (32%), Positives = 116/229 (50%), Gaps = 10/229 (4%)

Query: 1   MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55
           M + ++   L +  G  F N +LLE+A THSS  + + +    +YE+LEFLGD +L L +
Sbjct: 1   MVSTKFKNYLFEEYGIKFKNETLLEEAFTHSSYVNEHPKESVGNYEKLEFLGDAVLELAV 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S  L+ HF S  EG+L+   +++V  E  S  A E    + I +     K       ++ 
Sbjct: 61  SDYLYRHFPSLNEGQLTRLRSNIVRTEGFSGFAIECGFPAEINLGHGEEKTGARERKTLL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTP 173
            DV E+   AL+LD G++    F+ K      + SG+F   RD KT+LQE       +  
Sbjct: 121 EDVFEAFNGALFLDQGMDAVQKFL-KLTVYPLIDSGEFTDSRDYKTDLQELLQVNGAIKI 179

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           EY+V   S    +  F V + + G   ++G   +K+AAEQVAA   L +
Sbjct: 180 EYQVLEESKLPSN--FKVALLVEGKKISEGSGHNKKAAEQVAAKLALIK 226


>gi|293402241|ref|ZP_06646379.1| ribonuclease III [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304348|gb|EFE45599.1| ribonuclease III [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 227

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 116/229 (50%), Gaps = 10/229 (4%)

Query: 1   MSALRYSTLE-KRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLIS 56
           M+ + +  LE KRI Y   ++ L+ +AL HSS  + ++      ERLEF+GD +L L  +
Sbjct: 1   MNTI-FDWLESKRIPYT--DKELIRQALVHSSYVNEHKTFAHDNERLEFMGDAVLQLWST 57

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
           T LF       EG+++     LV  E  ++  R+L L  ++ +     K       SI A
Sbjct: 58  TKLFKLTPELSEGQMTTLRAQLVCEEALAEYNRKLGLGRYLLLGVGEEKTGGRERDSILA 117

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D+ E+++ A+YLD G++     +++     A+   K  +  D KT+LQE+  +    T  
Sbjct: 118 DMFEAVLGAIYLDSGMDSINVILEEVLTP-AITQPKSEKVIDYKTKLQEYIQSDSRKTVH 176

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           Y+    SGP + P F V V +  +   +G   SK+ AEQ+AA +  ++ 
Sbjct: 177 YETIHVSGPSNKPEFEVAVMLDDITLGRGKGFSKKRAEQMAAKDAFEKM 225


>gi|197294673|ref|YP_001799214.1| DsRNA-specific ribonuclease [Candidatus Phytoplasma australiense]
 gi|171854000|emb|CAM11965.1| DsRNA-specific ribonuclease [Candidatus Phytoplasma australiense]
          Length = 222

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 67/223 (30%), Positives = 106/223 (47%), Gaps = 7/223 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLF 60
           +      K++     N +L  KALTHSS S+     QE+ ERLEFLGD I+GLL++  L+
Sbjct: 1   MNTEHFLKKLNIVPKNIALYRKALTHSSYSNEKEFLQENNERLEFLGDAIIGLLMADYLY 60

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                  EG ++ +    V  ++ +  A+ ++L +++ +     K+      SI AD  E
Sbjct: 61  QKNKE-NEGVMTKKRAQAVCEKSLTIYAKSINLQNYLFLGKGE-KNKDFNTKSIIADAFE 118

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +L  A+YLD G   A     +       K+     D KT+LQE   ++  +  +YK+   
Sbjct: 119 ALFGAIYLDLGYNSAKKVFQRLVIPHLPKAIDII-DFKTQLQEIVQSEKKI-IQYKIVSE 176

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            GP H  +F   V +       G   +K+ AEQ AA E L + 
Sbjct: 177 EGPAHSKKFIAEVYLDKKILGSGEGTTKKEAEQKAAQEALSKL 219


>gi|150399590|ref|YP_001323357.1| ribonuclease III [Methanococcus vannielii SB]
 gi|150012293|gb|ABR54745.1| Ribonuclease III [Methanococcus vannielii SB]
          Length = 227

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 106/224 (47%), Gaps = 7/224 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
            +  L   +   F N ++ ++A  HSS  + +     E  ERLE+LGD +L L++S  LF
Sbjct: 3   NFEKLLLELDIKFNNLNIFKQAFIHSSYVNEHDNENLEDNERLEYLGDAVLELVVSEYLF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            +     EGE+S   +  V   +    A++L+   +I +             +I +DV E
Sbjct: 63  EN-KLLNEGEMSKLRSKYVCEYSLFLYAKKLNFGDYILLGKGEINSNGFNRPTILSDVFE 121

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + IAA+YLD G+     F +K+      + S K   D KT+LQE   ++   T  Y +  
Sbjct: 122 AFIAAIYLDLGLCSVKKFFNKFIVPIIEENSKKLFIDYKTKLQEMIQSENK-TVRYILLE 180

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             G  HD  F V V+I     ++G+  SK+ AE+ AA   L + 
Sbjct: 181 ELGEPHDKEFIVAVKIGRKIISKGVGKSKKDAERQAAKIALLKL 224


>gi|148658678|ref|YP_001278883.1| ribonuclease III [Roseiflexus sp. RS-1]
 gi|254807897|sp|A5V230|RNC_ROSS1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|148570788|gb|ABQ92933.1| RNAse III [Roseiflexus sp. RS-1]
          Length = 237

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 73/212 (34%), Positives = 106/212 (50%), Gaps = 8/212 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE------SYERLEFLGDRILGLLISTL 58
               L  R+G  F+++ LLE+ALTHSS  + + E      S ERLEFLGD I+  L + L
Sbjct: 4   SVDELSARLGVTFSDQRLLEQALTHSSFLNEHVEERMHLDSNERLEFLGDAIINFLAARL 63

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           +F  F  A EGEL+    +L+  ET +  A+  +L +++ ++            ++ AD 
Sbjct: 64  VFERFPDAGEGELTAWRTALIRTETLAGFAQRYNLGAYVLLARGEESSGARQRQALLADT 123

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
            E++IAAL+LD G+    TF+   ++     L       D K+ LQ    A+  VTP Y 
Sbjct: 124 FEAVIAALFLDQGLNAVRTFLLPLFEAELASLPDRTLPVDYKSRLQARIQAERRVTPRYH 183

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
              RSGP+H P FTV V         G   SK
Sbjct: 184 EIDRSGPEHRPEFTVEVRAGEERLGTGKGPSK 215


>gi|325108661|ref|YP_004269729.1| RNAse III [Planctomyces brasiliensis DSM 5305]
 gi|324968929|gb|ADY59707.1| RNAse III [Planctomyces brasiliensis DSM 5305]
          Length = 335

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 71/218 (32%), Positives = 117/218 (53%), Gaps = 5/218 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            +  E+ +GY F +++ L K+LTH+SI+ +  +S ER+EFLGD +LG ++   LF  F  
Sbjct: 15  VAECEQALGYQFQDKNWLLKSLTHASIAQTRLQSNERMEFLGDAVLGAVVCDRLFALFPE 74

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT-SIQADVVESLIA 124
            +EG+++   + +VS   C+Q+A  L L  F+++   L +     +  S+ A V ES+IA
Sbjct: 75  DEEGQMTQMKSEVVSRTACAQLALALGLDRFVQMGKGLHQS--REIPLSVLAGVFESVIA 132

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YLDGG + A  F+    +     + +    R++K++LQ+        TP Y++   SG
Sbjct: 133 AIYLDGGYKAAFDFISGKLEDLIQHAAETAHIRNSKSQLQQLTQRTRSQTPTYELLQESG 192

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           PDH   F V   +           +K+ AEQ AA   L
Sbjct: 193 PDHSKCFLVQAIVGPDTYPPAWGSNKKEAEQKAALNAL 230


>gi|296158234|ref|ZP_06841066.1| ribonuclease III [Burkholderia sp. Ch1-1]
 gi|295891570|gb|EFG71356.1| ribonuclease III [Burkholderia sp. Ch1-1]
          Length = 416

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 102/205 (49%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSPLESRLRYEFRNAELLRQALTHRSHSSTH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD +E+++
Sbjct: 58  GKLDEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADTLEAVL 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG E A T + + +      +      +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFEAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202


>gi|260578984|ref|ZP_05846886.1| ribonuclease III [Corynebacterium jeikeium ATCC 43734]
 gi|258602849|gb|EEW16124.1| ribonuclease III [Corynebacterium jeikeium ATCC 43734]
          Length = 244

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 64/208 (30%), Positives = 99/208 (47%), Gaps = 6/208 (2%)

Query: 21  SLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            LL  ALTH S ++   +  + ERLEFLGD +LGL ++  L+  F    E ++S   + +
Sbjct: 36  DLLRLALTHRSFANENGHLPNNERLEFLGDAVLGLAVAEQLYRQFPERAESDISKMRSGV 95

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138
           V+    + VAR L +  +I +             SI AD VES++ A+YL  G +VA   
Sbjct: 96  VNMYALADVARHLGMGDYILLGRGEMLTGGKDKHSILADSVESMLGAIYLHHGFDVARAT 155

Query: 139 VDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
           V + + ++  ++       D KT L E         P Y+V    GP+HD  F   V I 
Sbjct: 156 VLRLFAEKITEAPTTGLTMDWKTVLLEKLSDMKLPLPTYEVRGE-GPEHDKTFYATVTIE 214

Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            L    G   +K+ AE  AA + +++  
Sbjct: 215 DLV-THGEGHTKKVAEHAAAKQAVQKLN 241


>gi|145219011|ref|YP_001129720.1| RNAse III [Prosthecochloris vibrioformis DSM 265]
 gi|145205175|gb|ABP36218.1| RNAse III [Chlorobium phaeovibrioides DSM 265]
          Length = 259

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 104/226 (46%), Gaps = 7/226 (3%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHS-----YQESYERLEFLGDRILGLLIS 56
           +      + + +G    +      ALTH S  H         S +RLEFLGD ILGL+I+
Sbjct: 27  TPESIEFVSRLLGRKPGDMRFYTTALTHRSAVHDPSTPLNTHSNQRLEFLGDAILGLVIT 86

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF     + EGELS     +V+ ++ +  AR + +   + +             S  A
Sbjct: 87  DYLFRELPDSPEGELSNTRAKIVNRKSLAGFARSIKIGDHLILGESADHAKIRVSESTLA 146

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPE 174
           D +E+ I A++LD GI  A +F++++  +  R         + K+ L E   A     P 
Sbjct: 147 DALEAFIGAIWLDRGISAATSFINEHVIEHRRFNTLITAENNHKSRLIEHTQALHLPPPR 206

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           Y V    G +H+ RFTV V  +G    +G+   K+ AEQ AAAE +
Sbjct: 207 YSVISEEGAEHEKRFTVEVSCNGKVLGRGIAARKKDAEQHAAAEAM 252


>gi|15835187|ref|NP_296946.1| ribonuclease III [Chlamydia muridarum Nigg]
 gi|270285359|ref|ZP_06194753.1| ribonuclease III [Chlamydia muridarum Nigg]
 gi|270289375|ref|ZP_06195677.1| ribonuclease III [Chlamydia muridarum Weiss]
 gi|301336756|ref|ZP_07224958.1| ribonuclease III [Chlamydia muridarum MopnTet14]
 gi|13878715|sp|Q9PK97|RNC_CHLMU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|7190609|gb|AAF39406.1| ribonuclease III [Chlamydia muridarum Nigg]
          Length = 232

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 65/221 (29%), Positives = 105/221 (47%), Gaps = 3/221 (1%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLL 59
            +    +E ++ + F+   LL  ALTH S  + +    E  ERLEFLGD +LGL+++  L
Sbjct: 4   TVNIQAVESKLKFTFSQPRLLVTALTHPSYRNEFPSDGEDSERLEFLGDAVLGLVVTEHL 63

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F  F S  EG LS   ++LV+AE C    ++L L   + +    +        S  A++ 
Sbjct: 64  FLLFPSLNEGLLSTTRSALVNAEACFNYTQKLSLGEHLLIGRGEKMQSHRGKISAYANLF 123

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E+++ A+YLDGG+  A   +      +         + K  LQ++      V P Y    
Sbjct: 124 EAILGAVYLDGGLAPARQIIVPLLPNKEAILPLMLVNPKNRLQQFTQQTLKVLPTYIALP 183

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            S  D  P + V V ++     +G   SK+ AE++AA + L
Sbjct: 184 WSSEDGTPGYHVQVFVNEKLWGEGFAGSKKEAEKLAAKQAL 224


>gi|329942692|ref|ZP_08291471.1| ribonuclease III [Chlamydophila psittaci Cal10]
 gi|332287287|ref|YP_004422188.1| ribonuclease III [Chlamydophila psittaci 6BC]
 gi|313847871|emb|CBY16866.1| ribonuclease III [Chlamydophila psittaci RD1]
 gi|325506653|gb|ADZ18291.1| ribonuclease III [Chlamydophila psittaci 6BC]
 gi|328814952|gb|EGF84941.1| ribonuclease III [Chlamydophila psittaci Cal10]
 gi|328914533|gb|AEB55366.1| ribonuclease III [Chlamydophila psittaci 6BC]
          Length = 237

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 62/224 (27%), Positives = 101/224 (45%), Gaps = 4/224 (1%)

Query: 1   MSA-LRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLIS 56
           M+  +    +E ++ + F    LL  ALTH S  +      E  ERLEFLGD +L L+++
Sbjct: 1   MNNLINIKEVEAKLNFTFTQPKLLVTALTHPSYRNETATITEDSERLEFLGDAVLCLIVT 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  F S  EG LS    +L++A +C Q    L L  ++ +    R       TS  A
Sbjct: 61  EHLFLLFPSMDEGTLSTARAALINAVSCCQYTDALGLGEYLLIGKGERIQNERGRTSAYA 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           ++ E+++ A+YLDGG+  A          +         + K  LQ+         P Y+
Sbjct: 121 NLFEAILGAVYLDGGLAPARQITVPLLPSKKDILPLMLGNPKNRLQQLTQKHLRTLPVYQ 180

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
               + P     + + V ++     +G   SK+ AE++AA + L
Sbjct: 181 CESWTSPQGASGYHIRVIVNNEVWGEGFALSKKEAEKLAAQQAL 224


>gi|294504509|ref|YP_003568571.1| ribonuclease III [Yersinia pestis Z176003]
 gi|169749969|gb|ACA67487.1| Ribonuclease III [Yersinia pseudotuberculosis YPIII]
 gi|186699329|gb|ACC89958.1| ribonuclease III [Yersinia pseudotuberculosis PB1/+]
 gi|262362499|gb|ACY59220.1| ribonuclease III [Yersinia pestis D106004]
 gi|262366496|gb|ACY63053.1| ribonuclease III [Yersinia pestis D182038]
 gi|294354968|gb|ADE65309.1| ribonuclease III [Yersinia pestis Z176003]
          Length = 204

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 66/189 (34%), Positives = 95/189 (50%), Gaps = 6/189 (3%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
           +ALTH S S  +    ERLEFLGD IL  +I+  L+  F    EG++S    +LV   T 
Sbjct: 3   QALTHRSASSKH---NERLEFLGDSILSFVIANELYRRFPRVDEGDMSRMRATLVRGNTL 59

Query: 85  SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
           +++ARE DL   +R+     K       SI AD VE+LI  ++LD  I      + +++ 
Sbjct: 60  AEMAREFDLGECLRLGPGELKSGGFRRESILADTVEALIGGVFLDSDIHTIERLILEWYH 119

Query: 145 QRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APA 201
            R   +  G  ++D KT LQE+   +    P Y V    G  HD  FT+  ++SGL  P 
Sbjct: 120 SRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLNEPV 179

Query: 202 QGMDCSKRA 210
            G   S+R 
Sbjct: 180 IGTGSSRRK 188


>gi|296270740|ref|YP_003653372.1| ribonuclease III [Thermobispora bispora DSM 43833]
 gi|296093527|gb|ADG89479.1| ribonuclease III [Thermobispora bispora DSM 43833]
          Length = 267

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 65/194 (33%), Positives = 99/194 (51%), Gaps = 5/194 (2%)

Query: 20  RSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
             +LE+ALTH S ++      + ERLEFLGD +LGL+++  L+ +     EG+L+    +
Sbjct: 28  PDILEQALTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRNHPDMPEGQLAKLRAA 87

Query: 78  LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137
           +V+    + VAR LDL  ++R+            +SI AD +E+LI  +Y+D G++ A  
Sbjct: 88  VVNMRALADVARSLDLGKYLRLGRGEEGTGGRDKSSILADTLEALIGTVYVDKGLDEAFR 147

Query: 138 FVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
            V + +     +S       D KT LQE   A+    PEY V   SGPDH   F   V +
Sbjct: 148 VVHQLFDPLIERSASLGAGLDWKTSLQELTAAESLGVPEYHV-DESGPDHAKSFVATVRV 206

Query: 196 SGLAPAQGMDCSKR 209
            G    +G   SK+
Sbjct: 207 GGKEYGKGTGRSKK 220


>gi|209517222|ref|ZP_03266067.1| Ribonuclease III [Burkholderia sp. H160]
 gi|209502358|gb|EEA02369.1| Ribonuclease III [Burkholderia sp. H160]
          Length = 423

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 65/205 (31%), Positives = 102/205 (49%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSPLESRLRYEFRNAELLRQALTHRSHSSTH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD +E+++
Sbjct: 58  GKLDEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADTLEAVL 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG + A T + + +      +      +DAKT LQE+        P Y V    
Sbjct: 118 GAIFLDGGFDAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202


>gi|300858757|ref|YP_003783740.1| ribonuclease III [Corynebacterium pseudotuberculosis FRC41]
 gi|300686211|gb|ADK29133.1| ribonuclease III [Corynebacterium pseudotuberculosis FRC41]
 gi|302206463|gb|ADL10805.1| Ribonuclease III [Corynebacterium pseudotuberculosis C231]
 gi|302331018|gb|ADL21212.1| Ribonuclease III [Corynebacterium pseudotuberculosis 1002]
 gi|308276705|gb|ADO26604.1| Ribonuclease III [Corynebacterium pseudotuberculosis I19]
          Length = 249

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 73/220 (33%), Positives = 111/220 (50%), Gaps = 6/220 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61
           + Y++L   +G     R LL  ALTH S ++      + ERLEFLGD +LGL +++ L+ 
Sbjct: 21  INYASLIDSLGIDIP-RDLLMLALTHRSFANENGSLPNNERLEFLGDAVLGLSVASKLYE 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + S  E ++S    S+VS    + +ARE+ L SFI +             SI AD  E+
Sbjct: 80  QYPSRAESDISKMRASIVSRYGLADIAREIKLGSFILLGKGELMTNGRDKESILADTTEA 139

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTF 179
           L+ A+YL  G EVA   V + ++++   +      +D KT LQE A  +    P Y    
Sbjct: 140 LLGAIYLAHGFEVARNTVLRLFQRKIDTASAVGMHQDWKTTLQERAAERKLPIPVY-TAS 198

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            +GP+H   FT VV +      +G   +K+ AEQ AA + 
Sbjct: 199 STGPEHSQIFTAVVTVGTTVLGEGTGPNKKLAEQAAAHKA 238


>gi|182414805|ref|YP_001819871.1| ribonuclease III [Opitutus terrae PB90-1]
 gi|177842019|gb|ACB76271.1| Ribonuclease III [Opitutus terrae PB90-1]
          Length = 250

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 104/226 (46%), Gaps = 6/226 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTL 58
           S    + L+ R+ Y F + +LLE+A+TH+S         ES +RLEFLGD +L L+++  
Sbjct: 20  SPSPLAALQTRLIYTFRDPALLERAVTHTSYLPENPDIAESNQRLEFLGDAVLQLILTEA 79

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF  F   +EG LS R  +L       ++AREL L   + + S          +S   D 
Sbjct: 80  LFELFPGDREGPLSRRRAALTKGAFLVELARELQLDRCLLLGSSEEASGGRTRSSALEDA 139

Query: 119 VESLIAALYLDGGIEVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFG-VTPEY 175
            E+L+ ALYLD  + +    V   +      L       + K  LQE    ++G     Y
Sbjct: 140 FEALVGALYLDSDLALTRRIVLGLYGDLPSRLSGVVNEENPKGRLQELIQPEYGNQALRY 199

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +VT   G DH   + V V +       G   SK+ AE+ AA   L+
Sbjct: 200 EVTGIEGEDHARAYEVAVFLHDRVLGSGRGPSKKLAEEAAARVALE 245


>gi|319941434|ref|ZP_08015762.1| ribonuclease III [Sutterella wadsworthensis 3_1_45B]
 gi|319805054|gb|EFW01884.1| ribonuclease III [Sutterella wadsworthensis 3_1_45B]
          Length = 226

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 66/209 (31%), Positives = 102/209 (48%), Gaps = 6/209 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           L    LE+RIGY F ++ LL +A+TH S +  +    ERLEFLGD +L  +I   LF   
Sbjct: 2   LSLEALEERIGYVFQDKKLLRRAVTHRSFAQEH---NERLEFLGDSVLNCVIGYALFLRD 58

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EGELS    +LV  +T  ++A ++D++SF+ +     K   +   SI AD +E++ 
Sbjct: 59  KHFNEGELSRVRANLVCEKTLHEIALKIDVSSFLYMGEGEVKTGGAHRASILADAMEAIF 118

Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++ + G + A   + K +      L   +  +D KT LQE         PEY +   +
Sbjct: 119 GAVFREAGFDTAQRVILKLYDPILTGLTPEQMSKDPKTRLQELLQGDHLPRPEYAIVAAT 178

Query: 182 GPDHDPRFTVVVEISG-LAPAQGMDCSKR 209
           G  H+ RF     I       +G   S+R
Sbjct: 179 GAAHERRFECECRIERLKIVTRGTATSRR 207


>gi|229491421|ref|ZP_04385245.1| ribonuclease III [Rhodococcus erythropolis SK121]
 gi|229321706|gb|EEN87503.1| ribonuclease III [Rhodococcus erythropolis SK121]
          Length = 257

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 105/224 (46%), Gaps = 9/224 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH 62
            +  L   +G       LL  ALTH S ++      + ERLEFLGD +LG+ ++  L+  
Sbjct: 15  NHDKLLAAVGVDIE-PGLLTLALTHRSYAYENGGLPTNERLEFLGDSVLGVTVTENLYLS 73

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVAR---ELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
                EG+L+    S+V+    ++VAR   E  L + + +             SI AD +
Sbjct: 74  HPDKSEGDLAKIRASVVNMHALAEVARTLGEGGLGAHLLLGKGEEMTGGRDKPSILADGM 133

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177
           ES++ A++L  GIE A   V   +     ++       D KT LQE         P Y++
Sbjct: 134 ESILGAIHLQHGIETARRVVLDLFDDLLTRAPLLGAGLDWKTSLQELTAEHGAGVPVYEI 193

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           T  +GPDHD  FT  V ISG     G+  SK+ AEQ AA+   K
Sbjct: 194 TA-TGPDHDKEFTATVLISGKPLGVGVGRSKKEAEQKAASSAWK 236


>gi|238750386|ref|ZP_04611887.1| Ribonuclease 3 [Yersinia rohdei ATCC 43380]
 gi|238711317|gb|EEQ03534.1| Ribonuclease 3 [Yersinia rohdei ATCC 43380]
          Length = 204

 Score =  221 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 66/189 (34%), Positives = 95/189 (50%), Gaps = 6/189 (3%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
           +ALTH S S  +    ERLEFLGD IL  +I+  L+  F    EG++S    +LV   T 
Sbjct: 3   QALTHRSASSKH---NERLEFLGDSILSFVIANELYRRFPRVDEGDMSRMRATLVRGNTL 59

Query: 85  SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
           +++ARE DL   +R+     K       SI AD VE+LI  ++LD  I      +  +++
Sbjct: 60  AEMAREFDLGECLRLGPGELKSGGFRRESILADTVEALIGGIFLDSDIHTIERLILDWYR 119

Query: 145 QRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APA 201
            R   +  G  ++D KT LQE+   +    P Y V    G  HD  FT+  ++SGL  P 
Sbjct: 120 SRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLSEPV 179

Query: 202 QGMDCSKRA 210
            G   S+R 
Sbjct: 180 VGAGSSRRK 188


>gi|254252845|ref|ZP_04946163.1| Ribonuclease III [Burkholderia dolosa AUO158]
 gi|124895454|gb|EAY69334.1| Ribonuclease III [Burkholderia dolosa AUO158]
          Length = 377

 Score =  221 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 67/205 (32%), Positives = 100/205 (48%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSQLESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L++A  +R+     +       SI AD  E++I
Sbjct: 58  GKLDEGDLSRVRANLVKQQSLYEIAQALNIADGLRLGEGELRSGGFRRPSILADAFEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG E A   + + +      +      +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATL 177

Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202


>gi|313901966|ref|ZP_07835382.1| ribonuclease III [Thermaerobacter subterraneus DSM 13965]
 gi|313467755|gb|EFR63253.1| ribonuclease III [Thermaerobacter subterraneus DSM 13965]
          Length = 284

 Score =  221 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 74/222 (33%), Positives = 108/222 (48%), Gaps = 7/222 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
              +    G A A      +ALTH+S    + +      ERLEFLGD +L L ++  +F 
Sbjct: 43  VEAVAALTGVAPARPEPFLEALTHASYRSEHPDTAGPDNERLEFLGDAVLNLCVTDYIFR 102

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +    EGELS    ++V AET +  A+ L L   +R+             S+ AD  E+
Sbjct: 103 TYPQRPEGELSKLRAAVVRAETLAATAQRLGLGELLRLGRGEEATGGRQRPSVLADAYEA 162

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ---RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++AA+YL  G+E A  F+ +       R  +S     D KT LQE +       P Y+V 
Sbjct: 163 MVAAVYLQEGLEGARAFILRTLGDDIRRLAESSGACDDPKTALQELSRRLGLGEPTYRVV 222

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             +GP+HDPR+TV V + G   AQ +  SK+ AE+ AA   L
Sbjct: 223 GAAGPEHDPRYTVEVRVGGRPLAQAVGRSKKVAEREAARMAL 264


>gi|145224771|ref|YP_001135449.1| ribonuclease III [Mycobacterium gilvum PYR-GCK]
 gi|315445101|ref|YP_004077980.1| RNAse III [Mycobacterium sp. Spyr1]
 gi|145217257|gb|ABP46661.1| RNAse III [Mycobacterium gilvum PYR-GCK]
 gi|315263404|gb|ADU00146.1| RNAse III [Mycobacterium sp. Spyr1]
          Length = 234

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 68/210 (32%), Positives = 101/210 (48%), Gaps = 8/210 (3%)

Query: 21  SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            LL  ALTH S S+      + ERLEFLGD +LGL I+  L++      EG+L+    S+
Sbjct: 19  ELLTIALTHRSYSYENGGVPTNERLEFLGDSVLGLTITEELYHRHPDRSEGDLAKLRASI 78

Query: 79  VSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
           V+ +  + V R L    L +++ +         +  +SI AD VESL+ A+YL+ G   A
Sbjct: 79  VNTQALADVGRNLSEHGLGAYLLLGKGEENSGGADKSSILADGVESLLGAIYLEHGAVAA 138

Query: 136 GTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
              + + +      +       D K+ LQE   +     P Y VT  +GPDHD  FT VV
Sbjct: 139 REVILRLFSDLLDTAPTLGAGLDWKSSLQELTASLALGAPSYHVTS-TGPDHDKEFTAVV 197

Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            I+      G+  +K+ AE  AA+      
Sbjct: 198 IIAEREHGTGVGRTKKEAELKAASAAWNAL 227


>gi|169630337|ref|YP_001703986.1| ribonuclease III [Mycobacterium abscessus ATCC 19977]
 gi|169242304|emb|CAM63332.1| Ribonuclease III Rnc [Mycobacterium abscessus]
          Length = 258

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 70/210 (33%), Positives = 102/210 (48%), Gaps = 9/210 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH 62
           R+  L   IG    +  LL  ALTH S ++      + ERLEFLGD +LGL I+  L++ 
Sbjct: 8   RHDDLRAAIGVQLGD-ELLTLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITETLYHS 66

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVV 119
                EG+L+    S+V+ +  + VAR L    L + + +            +SI AD +
Sbjct: 67  HPDRSEGDLAKLRASIVNTQALAGVARGLTGDGLGAHLLLGKGEENTGGRDKSSILADGM 126

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177
           ES++ A+YL+ G+E A   V   + +    + K     D KT LQE    K    P Y V
Sbjct: 127 ESILGAVYLEHGLETARAVVLTLFGELLETAPKLGAGLDWKTSLQELTAEKGWGAPSYAV 186

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           T  +GPDHD  FT  V ++  A   G+  S
Sbjct: 187 TS-TGPDHDKEFTATVMVNDTAHGVGVGRS 215


>gi|89898471|ref|YP_515581.1| ribonuclease III [Chlamydophila felis Fe/C-56]
 gi|123483118|sp|Q253V2|RNC_CHLFF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|89331843|dbj|BAE81436.1| ribonuclease III [Chlamydophila felis Fe/C-56]
          Length = 237

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 65/224 (29%), Positives = 103/224 (45%), Gaps = 4/224 (1%)

Query: 1   MSA-LRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLIS 56
           M+  +    +E ++ + F    LL  ALTH S  +      E  ERLEFLGD +L L+++
Sbjct: 1   MNNLINIKEVEAKLKFTFTQPQLLVTALTHPSYRNETVTITEDSERLEFLGDAVLCLIVT 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  F S  EG LS    +L++A +C Q    L L  ++ +    R       TS  A
Sbjct: 61  EHLFLLFPSMDEGTLSTARAALINAVSCCQYTDALGLGEYLLIGKGERIQNERGRTSAYA 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           ++ E+++ A+YLDGG+  A          +         + K  LQ+    +    P Y+
Sbjct: 121 NLFEAILGAVYLDGGLAPARQITVPLLPSKKDILPLMLGNPKNRLQQLTQKQLRTLPVYQ 180

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            T    P   P + + V ++     +G   SK+ AE++AA E L
Sbjct: 181 STPWISPQGAPGYHIRVIVNDEIWGEGFALSKKEAEKLAAQEAL 224


>gi|154509007|ref|ZP_02044649.1| hypothetical protein ACTODO_01524 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798641|gb|EDN81061.1| hypothetical protein ACTODO_01524 [Actinomyces odontolyticus ATCC
           17982]
          Length = 240

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 61/211 (28%), Positives = 94/211 (44%), Gaps = 7/211 (3%)

Query: 19  NRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           +  LL+ AL H S ++      + ERLEFLGD +L ++I+  L+  +    E +LS    
Sbjct: 27  DAPLLQLALVHRSYANEAGGIANNERLEFLGDSVLSIVIAQKLYEQYPDVAESDLSRMRA 86

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           + VS +  +  AR + L  F+ +             SI +D  E+LI A YL  G+E A 
Sbjct: 87  ATVSQQPLAAAARRIGLGDFVFLGKGESMHGGRDKDSILSDTFEALIGATYLTSGLEEAR 146

Query: 137 TFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
             + +      + +      +D KT L E++ A       Y+V    GPDH   FT    
Sbjct: 147 RVILERLSFLLVDAPSRGQHQDWKTILIEYSQAHGLGEVSYEVEGE-GPDHQRVFTARAF 205

Query: 195 ISGL--APAQGMDCSKRAAEQVAAAEVLKRE 223
           +S        G   SK+ AE  AA + + R 
Sbjct: 206 VSERPDPIGSGQASSKKHAENAAAQDAMSRL 236


>gi|300814491|ref|ZP_07094752.1| ribonuclease III [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300511409|gb|EFK38648.1| ribonuclease III [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 230

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 80/226 (35%), Positives = 121/226 (53%), Gaps = 5/226 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58
           ++   TLEK + Y F N +LL+KALTHSS  +       +S ERLEFLGD +LGL++   
Sbjct: 2   SVDKETLEKNLNYFFKNHALLDKALTHSSYVNENNLKSFDSNERLEFLGDAVLGLVMGEY 61

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
            +  ++   EGELS   ++ V+    + VA  + L   I       K+   F  SI AD 
Sbjct: 62  YYKKYELYNEGELSKLRSASVNEHALAVVANHIKLGELIHFGKGEIKNGGKFRESILADA 121

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
            E+LI A++LD   ++A   +   ++    +   + RD K++LQE+       T +Y +T
Sbjct: 122 FEALIGAIFLDSSFKIARKVILALFEDIFDEIMLYDRDYKSKLQEFVQKDS-CTIKYVLT 180

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              GPD+D  F+  V ISG    +GM  +K+ +EQ+AA E LK  G
Sbjct: 181 DEIGPDNDKTFSSSVLISGKIYGKGMGKTKKKSEQMAAYEALKVLG 226


>gi|226305918|ref|YP_002765878.1| ribonuclease III [Rhodococcus erythropolis PR4]
 gi|226185035|dbj|BAH33139.1| probable ribonuclease III [Rhodococcus erythropolis PR4]
          Length = 257

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 104/224 (46%), Gaps = 9/224 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH 62
            +  L   +G       LL  ALTH S ++      + ERLEFLGD +LG+ ++  L+  
Sbjct: 15  NHDKLLAAVGVDIE-PGLLTLALTHRSYAYENGGLPTNERLEFLGDSVLGVTVTENLYLS 73

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVAR---ELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
                EG+L+    S+V+    ++VAR   E  L + + +             SI AD +
Sbjct: 74  HPDKSEGDLAKIRASVVNMHALAEVARTLGEGGLGAHLLLGKGEEMTGGRDKPSILADGM 133

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177
           ES++ A++L  GI+ A   V   +     ++       D KT LQE         P Y++
Sbjct: 134 ESILGAIHLQHGIDTARRVVLDLFDDLLTRAPLLGAGLDWKTSLQELTAEHGAGVPVYEI 193

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           T  +GPDHD  FT  V IS      G+  SK+ AEQ AA+   K
Sbjct: 194 TA-TGPDHDKEFTATVLISDKPLGVGVGRSKKEAEQKAASSAWK 236


>gi|291570878|dbj|BAI93150.1| ribonuclease III [Arthrospira platensis NIES-39]
          Length = 395

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 73/238 (30%), Positives = 113/238 (47%), Gaps = 24/238 (10%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60
             S L K+I   F N  LL  ALTHSS  + + +      E LEFLGD +L  +    L+
Sbjct: 165 ELSKLLKKI--PFQNVDLLNHALTHSSYLYEHPKEVKRDNELLEFLGDSVLNFISGEYLY 222

Query: 61  NHFDSA-KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           + + S   EG+L+   ++LV  +  ++ A +L L  +IR+         +   S+ ++  
Sbjct: 223 HKYKSVGNEGDLTKLRSALVENKQLAKFAEKLALQQYIRLGKG-----VALNPSLLSNTF 277

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALK--------SGKFRRDAKTELQEWAHAKFGV 171
           E++I A +LD G++    F+   +     +        SGK   D+K  LQEW     G 
Sbjct: 278 EAMIGACFLDSGMKKVQEFLQPLFDSVIAEITSLSQGNSGKVAADSKNRLQEWVQKNIGP 337

Query: 172 -TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK---REGI 225
            TPEY+     G DH  +FTV V + G    QG   SK+ A + AA + L    + G+
Sbjct: 338 ITPEYETIKEEGADHQKQFTVQVMVEGKVYGQGKGLSKKEASKKAAEKALDQIYKLGL 395


>gi|308271416|emb|CBX28024.1| Ribonuclease 3 [uncultured Desulfobacterium sp.]
          Length = 220

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 73/205 (35%), Positives = 108/205 (52%), Gaps = 7/205 (3%)

Query: 21  SLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           + L ++L HSS  +   +      ERLEFLGD +L L I  ++ N F    EG+LS   +
Sbjct: 2   NFLVESLRHSSFVNEQSDTQIRDNERLEFLGDAVLNLAIGHIIINRFPELDEGDLSRVRS 61

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           +LV+    ++VAR LDL S+I++             SI A+  E+++AA+YLDGG + A 
Sbjct: 62  NLVNELQVAEVARSLDLGSYIQLGKGEFLTNGRNKNSILANTFEAVVAAIYLDGGYDNAF 121

Query: 137 TFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
             ++K +      SGK     D K+++QE       + P Y V   SGPDHD  F V + 
Sbjct: 122 RIIEKIYLPILKLSGKSAAAYDFKSKVQELVQTGQEIKPAYNVVEESGPDHDKIFKVELT 181

Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEV 219
           I+ L    G   SK+ AEQ AA++ 
Sbjct: 182 INDLQ-TVGYGKSKKLAEQDAASKA 205


>gi|284054412|ref|ZP_06384622.1| ribonuclease III [Arthrospira platensis str. Paraca]
          Length = 394

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 73/238 (30%), Positives = 113/238 (47%), Gaps = 24/238 (10%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60
             S L K+I   F N  LL  ALTHSS  + + +      E LEFLGD +L  +    L+
Sbjct: 164 ELSKLLKKI--PFQNVDLLNHALTHSSYLYEHPKEVKRDNELLEFLGDSVLNFISGEYLY 221

Query: 61  NHFDSA-KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           + + S   EG+L+   ++LV  +  ++ A +L L  +IR+         +   S+ ++  
Sbjct: 222 HKYKSVGNEGDLTKLRSALVENKQLAKFAEKLALQQYIRLGKG-----VALNPSLLSNTF 276

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALK--------SGKFRRDAKTELQEWAHAKFGV 171
           E++I A +LD G++    F+   +     +        SGK   D+K  LQEW     G 
Sbjct: 277 EAMIGACFLDSGMKKVQEFLQPLFDSVIAEITSLSQGNSGKVAADSKNRLQEWVQKNIGP 336

Query: 172 -TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK---REGI 225
            TPEY+     G DH  +FTV V + G    QG   SK+ A + AA + L    + G+
Sbjct: 337 ITPEYETIKEEGADHQKQFTVQVMVEGKVYGQGKGLSKKEASKKAAEKALDQIYKLGL 394


>gi|293192364|ref|ZP_06609475.1| ribonuclease III [Actinomyces odontolyticus F0309]
 gi|292820279|gb|EFF79273.1| ribonuclease III [Actinomyces odontolyticus F0309]
          Length = 240

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 61/211 (28%), Positives = 95/211 (45%), Gaps = 7/211 (3%)

Query: 19  NRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           +  LL+ AL H S ++      + ERLEFLGD +L ++I+  L+  +    E +LS    
Sbjct: 27  DAPLLQLALVHRSYANEAGGIANNERLEFLGDSVLSIVIAQKLYEQYPDVAESDLSRMRA 86

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           + VS +  +  AR + L  F+ +             SI +D  E+LI A YL  G+E A 
Sbjct: 87  ATVSQQPLAAAARRIGLGDFVFLGKGESMHGGRDKDSILSDTFEALIGATYLTSGLEEAR 146

Query: 137 TFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
             + +      + +      +D KT L E++ A+      Y+V    GPDH   FT    
Sbjct: 147 RVILERLSFLLVDAPSRGQHQDWKTILIEYSQAQGLGEVSYEVEGE-GPDHQRVFTARAF 205

Query: 195 ISGL--APAQGMDCSKRAAEQVAAAEVLKRE 223
           +S        G   SK+ AE  AA + + R 
Sbjct: 206 VSERPDPIGSGQASSKKHAENAAAQDAMSRL 236


>gi|282882375|ref|ZP_06291003.1| ribonuclease III [Peptoniphilus lacrimalis 315-B]
 gi|281297796|gb|EFA90264.1| ribonuclease III [Peptoniphilus lacrimalis 315-B]
          Length = 230

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 80/226 (35%), Positives = 121/226 (53%), Gaps = 5/226 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58
           ++   TLEK + Y F N +LL+KALTHSS  +       +S ERLEFLGD +LGL++   
Sbjct: 2   SVDKETLEKNLNYFFKNHALLDKALTHSSYVNENNLKSFDSNERLEFLGDAVLGLVMGEY 61

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
            +  ++   EGELS   ++ V+    + VA  + L   I       K+   F  SI AD 
Sbjct: 62  YYKKYELYNEGELSKLRSASVNEHALAVVANHIKLGELIHFGKGEIKNGGKFRESILADA 121

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
            E+LI A++LD   ++A   +   ++    +   + RD K++LQE+       T +Y +T
Sbjct: 122 FEALIGAVFLDSSFKIARKVILALFEDIFDEIMLYDRDYKSKLQEFVQKDS-CTIKYVLT 180

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              GPD+D  F+  V ISG    +GM  +K+ +EQ+AA E LK  G
Sbjct: 181 DEIGPDNDKTFSSSVLISGKIYGKGMGKTKKKSEQMAAYEALKVLG 226


>gi|170695422|ref|ZP_02886567.1| Ribonuclease III [Burkholderia graminis C4D1M]
 gi|170139613|gb|EDT07796.1| Ribonuclease III [Burkholderia graminis C4D1M]
          Length = 421

 Score =  221 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 65/205 (31%), Positives = 102/205 (49%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPSSPLESRLRYEFRNAELLRQALTHRSHSSTH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD +E+++
Sbjct: 58  GKLDEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADTLEAVL 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG + A T + + +      +      +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFDAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202


>gi|257138458|ref|ZP_05586720.1| ribonuclease III [Burkholderia thailandensis E264]
          Length = 464

 Score =  221 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 64/199 (32%), Positives = 97/199 (48%), Gaps = 6/199 (3%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           E R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F    EG
Sbjct: 2   ESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRFSKLDEG 58

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           +LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I A++LD
Sbjct: 59  DLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVFLD 118

Query: 130 GGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           GG E A   + + +      +      +DAKT LQE+        P Y V    G  H+ 
Sbjct: 119 GGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQ 178

Query: 188 RFTVVVEISGLAP-AQGMD 205
           +F V   +  L     G  
Sbjct: 179 QFEVECTVPKLDIKVSGSG 197


>gi|255326576|ref|ZP_05367653.1| ribonuclease III [Rothia mucilaginosa ATCC 25296]
 gi|255296316|gb|EET75656.1| ribonuclease III [Rothia mucilaginosa ATCC 25296]
          Length = 229

 Score =  221 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 104/224 (46%), Gaps = 6/224 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLL 59
            ++    L KR+G    +      +LTH S +  +   E  ERLEFLGD +L L I+  +
Sbjct: 5   PSVDTRELRKRLGVDI-DAETFLLSLTHRSYAFENPGVEHNERLEFLGDSVLSLAIAEEV 63

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  +    EGEL    + +VS    ++VAR+LDL  +I +         +   SI AD +
Sbjct: 64  YRRYPDLPEGELVKLHHVVVSTVALAKVARDLDLGRYILLGKGEIHTGGADKDSILADTM 123

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKV 177
           E++    YL+ G E A   V +               RD KTEL   A A+      Y+V
Sbjct: 124 EAIFGLTYLECGREAARDLVLRLIAPLLDDEKVLNSGRDWKTELLNLATARGWGDVRYEV 183

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           T   GPDH   +T V  ++      G+  SK+ AE++AA +  +
Sbjct: 184 TGE-GPDHARVYTAVAIVANQQTGTGVGPSKKEAERLAAEQAYR 226


>gi|329767729|ref|ZP_08259245.1| ribonuclease III [Gemella haemolysans M341]
 gi|328838830|gb|EGF88424.1| ribonuclease III [Gemella haemolysans M341]
          Length = 237

 Score =  221 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 103/224 (45%), Gaps = 5/224 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
            +TL K+ G+        + A +HSS ++  +     +YERLEFLGD ++ L  S  LF 
Sbjct: 10  LNTLNKKYGFNLKFSENFKNAFSHSSYTNEKRIAKHLNYERLEFLGDAVVELTTSEFLFK 69

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F    EGEL+    S+V  +T  + A +L L   I +     K       ++ AD+ ES
Sbjct: 70  KFYELPEGELTKLRASIVCEKTLVKYALQLGLDKCIYLGKGEEKMGGRSRAALLADIFES 129

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTFR 180
              A+YL+  +EV  TF+                 D KT LQE+         EY V   
Sbjct: 130 FTGAMYLESNLEVVKTFLHNTLFTEVQDLEYHSFVDYKTILQEYISKIKLGEIEYVVLDS 189

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +GP H   FT  + I G     G   +K+ +EQ++A + L++ G
Sbjct: 190 TGPSHSKTFTSAILIGGKQYGSGTATTKKESEQLSAKQALEKLG 233


>gi|332184579|gb|AEE26833.1| Ribonuclease III [Francisella cf. novicida 3523]
          Length = 230

 Score =  221 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 68/221 (30%), Positives = 109/221 (49%), Gaps = 9/221 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            YS     +GY F + +LL +ALTH S     +++YERLEFLGD +L  +I+ +L+  F 
Sbjct: 4   EYSRFYNILGYKFKDYTLLIRALTHRS---KTKKNYERLEFLGDSVLSFVIAEVLYKQFT 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+LS   + LV   T +Q+A  L +  +I + +            I  DV E++I 
Sbjct: 61  DLDEGKLSQLRSKLVKGATLAQLASSLKMDEYIILGASE--QGGHKREKILEDVFEAVIG 118

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRS 181
           A+YLD         + ++++   L         +D+K++LQE         PEY +    
Sbjct: 119 AIYLDSDFATVKKVILRWYQPIILSINLDTIKVKDSKSKLQEILLQNALSLPEYSIETIE 178

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221
           G DH+  FTVV     L    +    S++ AEQ AA ++++
Sbjct: 179 GKDHEQEFTVVAMSKDLNLQVKAQGTSRKKAEQKAAEKMIE 219


>gi|262202009|ref|YP_003273217.1| ribonuclease III [Gordonia bronchialis DSM 43247]
 gi|262085356|gb|ACY21324.1| ribonuclease III [Gordonia bronchialis DSM 43247]
          Length = 262

 Score =  220 bits (562), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 58/196 (29%), Positives = 97/196 (49%), Gaps = 8/196 (4%)

Query: 21  SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            LL  ALTH S ++      + ERLEFLGD +LG++I+  L+  +    EGEL+    S+
Sbjct: 24  QLLTLALTHRSYAYENGGLPTNERLEFLGDSVLGVVITERLYLSYPDRPEGELAKIRASV 83

Query: 79  VSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
           V+    + VAR L    L   + +             SI AD +ESL  A++++ G+  +
Sbjct: 84  VNMHALADVARSLGPGGLGRHLYLGRGEEMTGGRDKDSILADGLESLFGAVFIEHGLATS 143

Query: 136 GTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
              + + +     ++G      D KT LQE +  +    P+Y+    +GPDH+  FT V 
Sbjct: 144 KRVILRLFDDVIDRAGTLGAGLDWKTSLQELSAEQGLGPPQYQ-ISSTGPDHNKEFTAVA 202

Query: 194 EISGLAPAQGMDCSKR 209
            ++G +   G+  +K+
Sbjct: 203 VVAGESLGNGVGRTKK 218


>gi|167581151|ref|ZP_02374025.1| ribonuclease III [Burkholderia thailandensis TXDOH]
          Length = 464

 Score =  220 bits (562), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 64/199 (32%), Positives = 97/199 (48%), Gaps = 6/199 (3%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           E R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F    EG
Sbjct: 2   ESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRFSKLDEG 58

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           +LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I A++LD
Sbjct: 59  DLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVFLD 118

Query: 130 GGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           GG E A   + + +      +      +DAKT LQE+        P Y V    G  H+ 
Sbjct: 119 GGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQ 178

Query: 188 RFTVVVEISGLAP-AQGMD 205
           +F V   +  L     G  
Sbjct: 179 QFEVECTVPKLDIKVSGSG 197


>gi|297539125|ref|YP_003674894.1| ribonuclease III [Methylotenera sp. 301]
 gi|297258472|gb|ADI30317.1| ribonuclease III [Methylotenera sp. 301]
          Length = 231

 Score =  220 bits (562), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 70/210 (33%), Positives = 102/210 (48%), Gaps = 6/210 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +    L KR+ Y F +++LL +ALTH S +    ++ ERLE+LGD  L  +I+  L+  F
Sbjct: 1   MTQQDLSKRLSYKFVDKNLLTQALTHRSYA---SQNNERLEYLGDGALNFIIANQLYQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            S  EG+LS     LV   T S++A  LD+   +++     K       SI AD +E++I
Sbjct: 58  PSLAEGDLSRLRAQLVKEATISEIAFSLDIGDALKLGEGELKSAGWRRPSILADALEAII 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+YLDGG   A   V + + ++   +      +D K+ LQE    K    PEY V   S
Sbjct: 118 GAVYLDGGFFAAEALVLELYIEKLSTIDPKIIDKDPKSLLQEMLQGKKIAVPEYAVVHTS 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRA 210
           G  H   F V   I  L     G   S+R 
Sbjct: 178 GEAHAQIFIVECFIQKLDIRTVGEGTSRRI 207


>gi|150021479|ref|YP_001306833.1| ribonuclease III [Thermosipho melanesiensis BI429]
 gi|149794000|gb|ABR31448.1| Ribonuclease III [Thermosipho melanesiensis BI429]
          Length = 231

 Score =  220 bits (562), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 75/228 (32%), Positives = 123/228 (53%), Gaps = 10/228 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLL 59
           M   R   +E  IGY F N+ LL  ALTH+S ++  ++ SYERLEFLGD ++ +L+ T+L
Sbjct: 1   MERFREGEIEHVIGYRFRNKELLFTALTHTSYANENKKQSYERLEFLGDSVIDILVCTIL 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  + +  EG ++   +++ S +   ++A++ +L  +I +    R+   S   SI ADVV
Sbjct: 61  YEQYQTLNEGTMAQIKSAVTSEDILFEIAKKFNLGKYILLGKGERRSRGSEKKSILADVV 120

Query: 120 ESLIAALYLDG--GIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
           ESLIAA+YLD    +++      K +K       +GK   D KT+LQE    KF   P Y
Sbjct: 121 ESLIAAIYLDSNKNLKLIENLFSKIFKDYIDIFLTGKRIFDYKTKLQELTQDKFKQLPVY 180

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           + T   G     +F   ++I+    ++    SK+ AE++AA    ++ 
Sbjct: 181 ETTTVGG-----KFITTLKINNKIYSKAKGSSKKDAEKLAAKIAYEKL 223


>gi|167619235|ref|ZP_02387866.1| ribonuclease III [Burkholderia thailandensis Bt4]
          Length = 434

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 64/199 (32%), Positives = 97/199 (48%), Gaps = 6/199 (3%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           E R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F    EG
Sbjct: 2   ESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRFSKLDEG 58

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           +LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I A++LD
Sbjct: 59  DLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVFLD 118

Query: 130 GGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           GG E A   + + +      +      +DAKT LQE+        P Y V    G  H+ 
Sbjct: 119 GGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQ 178

Query: 188 RFTVVVEISGLAP-AQGMD 205
           +F V   +  L     G  
Sbjct: 179 QFEVECTVPKLDIKVSGSG 197


>gi|319763845|ref|YP_004127782.1| ribonuclease iii [Alicycliphilus denitrificans BC]
 gi|330823891|ref|YP_004387194.1| ribonuclease 3 [Alicycliphilus denitrificans K601]
 gi|317118406|gb|ADV00895.1| ribonuclease III [Alicycliphilus denitrificans BC]
 gi|329309263|gb|AEB83678.1| Ribonuclease 3 [Alicycliphilus denitrificans K601]
          Length = 228

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 72/208 (34%), Positives = 105/208 (50%), Gaps = 6/208 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M       L++R+ + F++ SLL++A+TH S S    +  ERLEFLGD +L L +S+LLF
Sbjct: 1   MPPDSLPALQQRLQHMFSDPSLLQRAVTHRSFS---ADHNERLEFLGDSVLNLAVSSLLF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                  EGELS     LV  E+   +A  L L   +R+     +       SI AD +E
Sbjct: 58  KRMQGLPEGELSRVRALLVRQESLHGIAVRLQLPQVLRLGEGESRSGGKMRPSILADALE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++I A+YLD G E A   V + ++   L     +  +DAKT LQEW   +    P+Y+V 
Sbjct: 118 AVIGAVYLDAGYEQAQALVHRLFEGVELSPRLQEAAKDAKTALQEWLQGRKMSLPQYRVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQ-GMD 205
             +G  H   F V  E+  L  A+ G  
Sbjct: 178 QTTGVAHKQVFHVACEVPALQLAERGSG 205


>gi|319792225|ref|YP_004153865.1| ribonuclease iii [Variovorax paradoxus EPS]
 gi|315594688|gb|ADU35754.1| ribonuclease III [Variovorax paradoxus EPS]
          Length = 228

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 78/219 (35%), Positives = 113/219 (51%), Gaps = 6/219 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            L+ R+ ++F++  LL+ ALTH S S    +  ERLEFLGD +L L +S LL+    +  
Sbjct: 7   ALQARLKHSFSDTRLLQLALTHRSFS---ADHNERLEFLGDSVLNLAVSHLLYTRLSALP 63

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG+LS    +LV  +T  ++A EL L+  +R+     +       SI AD +E+LI A+Y
Sbjct: 64  EGDLSRVRANLVKQDTLHRLALELQLSPLLRLGEGEARSGGPNRPSILADALEALIGAVY 123

Query: 128 LDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           LD G   A   V + ++   +        +D KTELQEW        P Y+V    G  H
Sbjct: 124 LDAGFAAAEALVRRLYESVEITPRMEAAAKDPKTELQEWLQGHKMKLPMYRVAATLGAAH 183

Query: 186 DPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223
              F V  E+  L    +G+  S+RA EQ AAA +L R 
Sbjct: 184 KQTFDVECEVPELGFRERGIGGSRRAGEQAAAAAMLIRL 222


>gi|254452330|ref|ZP_05065767.1| ribonuclease III [Octadecabacter antarcticus 238]
 gi|198266736|gb|EDY91006.1| ribonuclease III [Octadecabacter antarcticus 238]
          Length = 197

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 78/191 (40%), Positives = 108/191 (56%)

Query: 32  ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91
           +S   ++  +RLEFLGDR+LGL++S  L     +A EG L+ RFN+LV  ETC+ VAR++
Sbjct: 1   MSTPNRDDNQRLEFLGDRVLGLVMSEALLQADVNAPEGLLAPRFNALVRKETCADVARQI 60

Query: 92  DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151
           DL + +++             ++ AD +E++IAA+Y+D G +VA   V   W  R     
Sbjct: 61  DLGAVLKLGRSEMLTGGRRKEALLADAMEAVIAAVYIDAGFDVARERVVALWGDRISNVE 120

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
           +  RD KT LQEWA  +    P Y  T RSGPDH P FT+ V +   A       SKR A
Sbjct: 121 EDARDPKTALQEWAQGQGEPPPSYIETARSGPDHAPIFTIEVRLHSGATDTATAPSKRQA 180

Query: 212 EQVAAAEVLKR 222
           EQ AA  +L R
Sbjct: 181 EQAAAKSLLDR 191


>gi|227875300|ref|ZP_03993442.1| ribonuclease III [Mobiluncus mulieris ATCC 35243]
 gi|227844205|gb|EEJ54372.1| ribonuclease III [Mobiluncus mulieris ATCC 35243]
          Length = 261

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 60/200 (30%), Positives = 99/200 (49%), Gaps = 8/200 (4%)

Query: 20  RSLLEKALTHSSISHSYQES-----YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
             LL  A+TH S SH + ++      ERLEFLGD +L ++++  L+ +F    EG L+  
Sbjct: 28  PDLLVLAMTHRSFSHEHGKTGSRGTNERLEFLGDAVLQIIVTEYLYRNFPDEPEGTLAQM 87

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
             + VS    ++VAR++ L  ++R+     +       SI +D +E+LI A +L  G+ V
Sbjct: 88  RAATVSQTPLAEVARKIHLGEYLRLGVGEDRQGGRDKDSILSDTLEALIGATFLSCGLSV 147

Query: 135 AGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
               V+++ ++    + +     D KT LQE   A       Y+V   +GPDH   F+  
Sbjct: 148 TRVVVERHLRRFLRNAPRRAVTLDWKTTLQELLSAADLGEVTYEVVA-TGPDHQKHFSAQ 206

Query: 193 VEISGLAPAQGMDCSKRAAE 212
             + G    +G   SK+ AE
Sbjct: 207 ALVEGENWGEGQGSSKKIAE 226


>gi|295677176|ref|YP_003605700.1| ribonuclease III [Burkholderia sp. CCGE1002]
 gi|295437019|gb|ADG16189.1| ribonuclease III [Burkholderia sp. CCGE1002]
          Length = 426

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 65/205 (31%), Positives = 102/205 (49%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSPLESRLRYEFRNAELLRQALTHRSHSSTH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD +E+++
Sbjct: 58  GKLDEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADTLEAVL 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG + A T + + +      +      +DAKT LQE+        P Y V    
Sbjct: 118 GAIFLDGGFDAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202


>gi|307703518|ref|ZP_07640460.1| ribonuclease III [Streptococcus oralis ATCC 35037]
 gi|307622925|gb|EFO01920.1| ribonuclease III [Streptococcus oralis ATCC 35037]
          Length = 190

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 55/179 (30%), Positives = 83/179 (46%), Gaps = 1/179 (0%)

Query: 45  FLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR 104
           FLGD +L LLIS  L+  +    EG+LS     +V  E+ +  AR+     FI++     
Sbjct: 6   FLGDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLAGFARDCQFDQFIKLGKGEE 65

Query: 105 KDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQE 163
           K       +I  D  E+ + AL LD  +     F+ +    +      +  +D KT LQE
Sbjct: 66  KSGGRNRDTILGDAFEAFLGALLLDKDVARVKEFIYQVMIPKVEAGDFEMIKDYKTHLQE 125

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                  V   Y+VT  +GP HD  F V V + G +  +G   SK+ AEQ AA   +++
Sbjct: 126 LLQVNGDVDIRYQVTSETGPAHDKVFDVEVLVEGKSIGKGQGRSKKLAEQEAAKNAVEK 184


>gi|296117605|ref|ZP_06836189.1| ribonuclease III [Corynebacterium ammoniagenes DSM 20306]
 gi|295969336|gb|EFG82577.1| ribonuclease III [Corynebacterium ammoniagenes DSM 20306]
          Length = 244

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 66/210 (31%), Positives = 103/210 (49%), Gaps = 6/210 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           +A+  + L   +     ++  L  ALTH S ++ +    + ERLEFLGD +LGL I+  L
Sbjct: 18  AAIDTAPLLASLNVELEDK-YLRLALTHRSFANEHGHLPNNERLEFLGDAVLGLSIAARL 76

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  + +  E ++S    S+VS    + VARE+ L +FI +             SI AD  
Sbjct: 77  YEKYPTRPESDISKMRASIVSRFGLADVAREIGLGAFILLGKGEANSNGRDKDSILADTT 136

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKV 177
           E+L  A+YL  G E A   + + + Q+   +   R   D KT LQE    +   TP+Y  
Sbjct: 137 EALFGAIYLQHGFETARRVILELFAQKVDAAVSTRNHMDWKTTLQELCAERKLPTPDYSA 196

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           T  +GP+HD  FT  V + G    +G+  +
Sbjct: 197 TS-TGPEHDQLFTAQVHVDGQLLGEGVGPN 225


>gi|225075386|ref|ZP_03718585.1| hypothetical protein NEIFLAOT_00391 [Neisseria flavescens
           NRL30031/H210]
 gi|224953204|gb|EEG34413.1| hypothetical protein NEIFLAOT_00391 [Neisseria flavescens
           NRL30031/H210]
          Length = 239

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 65/224 (29%), Positives = 114/224 (50%), Gaps = 6/224 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           +    + +++KR+GY F N  LL++ALTH S +    +  ER EF+GD IL   ++ +LF
Sbjct: 6   LKKQAHRSIQKRLGYEFRNMELLQQALTHRSYN---AKHNERFEFVGDSILNYSVARMLF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EGELS    +LV+    +++A E+++   + + +   K       SI AD +E
Sbjct: 63  DAFPKLSEGELSRMRAALVNEGVLAEIALEMNVGDGLYLGAGELKSGGFRRPSILADAME 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++ AA+  D     A   V   + +R  ++     ++D+KT LQE   A+    P+Y++ 
Sbjct: 123 AMFAAVSFDADFSAAEKVVRHLFAERVKRADLNIGKKDSKTALQEALQARRFALPKYRIE 182

Query: 179 FRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221
            ++    D  F +  ++  L         S++ AEQ AA E L+
Sbjct: 183 EQAEQTADAMFVISCDLGELGFICNARGSSRKVAEQKAACEALE 226


>gi|91784707|ref|YP_559913.1| ribonuclease III [Burkholderia xenovorans LB400]
 gi|91688661|gb|ABE31861.1| RNAse III [Burkholderia xenovorans LB400]
          Length = 428

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 102/205 (49%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSPLESRLRYEFRNAELLRQALTHRSHSSTH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD +E+++
Sbjct: 58  GKLDEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADTLEAVL 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG E A T + + +      +      +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFEAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLEVKVSGSG 202


>gi|304389333|ref|ZP_07371298.1| ribonuclease III [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|315655502|ref|ZP_07908401.1| ribonuclease III [Mobiluncus curtisii ATCC 51333]
 gi|315656591|ref|ZP_07909478.1| ribonuclease III [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|304327451|gb|EFL94684.1| ribonuclease III [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|315490157|gb|EFU79783.1| ribonuclease III [Mobiluncus curtisii ATCC 51333]
 gi|315492546|gb|EFU82150.1| ribonuclease III [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 249

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 72/214 (33%), Positives = 110/214 (51%), Gaps = 14/214 (6%)

Query: 7   STLEKRI---GYAFANRSLLEKALTHSSISHSYQES-----YERLEFLGDRILGLLISTL 58
           +TLE+ +   G    +  LL  A+TH S +H + ++      ERLEFLGD +L ++++  
Sbjct: 19  ATLERLLADWG-QPVDTELLVVAMTHRSFAHEHGKTGSTGTNERLEFLGDAVLQIVVTEY 77

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF +F    EGEL+    + VS    ++VAR L L  +I +     +       SI +D 
Sbjct: 78  LFRNFPDVPEGELAPMRAATVSQTPLAEVARRLHLGDYILLGIGEDRQGGREKDSILSDT 137

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEY 175
           +E+LI A YL  G+E     ++++ + R L++   R    D KT L E+A A     PEY
Sbjct: 138 LEALIGASYLTSGLESTRVTIERHLR-RYLRNAPRRAVGMDWKTHLSEFAAANSLGEPEY 196

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            V   SGPDH   FT  + I+G    +G   SK+
Sbjct: 197 -VVQGSGPDHARVFTAQIRIAGEVLGEGQGTSKK 229


>gi|283457874|ref|YP_003362474.1| dsRNA-specific ribonuclease [Rothia mucilaginosa DY-18]
 gi|283133889|dbj|BAI64654.1| dsRNA-specific ribonuclease [Rothia mucilaginosa DY-18]
          Length = 229

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 104/224 (46%), Gaps = 6/224 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLL 59
            ++    L KR+G    +      +LTH S +  +   E  ERLEFLGD +L L I+  +
Sbjct: 5   PSVDTRELRKRLGVDI-DAETFLLSLTHRSYAFENPGVEHNERLEFLGDSVLSLAIAEEV 63

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  +    EGEL    + +VS    ++VAR+LDL  +I +         +   SI AD +
Sbjct: 64  YRRYPDLPEGELVKLHHVVVSTVALAKVARDLDLGRYILLGKGEIHTGGADKDSILADTM 123

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKV 177
           E++    YL+ G E A   V +               RD KTEL   A A+      Y+V
Sbjct: 124 EAIFGLTYLECGREAARDLVLRLIAPLLDDEKVLNSGRDWKTELLNLATARGWGDVRYEV 183

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           T   GPDH   +T V  ++      G+  SK+ AE++AA +  +
Sbjct: 184 TGE-GPDHARVYTAVAIVANQQAGTGVGPSKKEAERLAAEQAYR 226


>gi|146281615|ref|YP_001171768.1| ribonuclease III [Pseudomonas stutzeri A1501]
 gi|145569820|gb|ABP78926.1| ribonuclease III [Pseudomonas stutzeri A1501]
          Length = 208

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 71/192 (36%), Positives = 96/192 (50%), Gaps = 6/192 (3%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
            ALTH S +     + ERLEFLGD IL  +    LFNHF  A+EG+LS     LV  ET 
Sbjct: 3   LALTHRSYA---GRNNERLEFLGDAILNFVAGEALFNHFPQAREGQLSRLRARLVKGETL 59

Query: 85  SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
           + +AR  +L   +R+ S   K       SI AD +E+LI A+YLD G++VA   V  +  
Sbjct: 60  AVLARGFELGDHLRLGSGELKSGGYRRESILADTLEALIGAIYLDAGMDVARERVIAWLA 119

Query: 145 QRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APA 201
                L      +D KT LQE+  ++    P Y+V    G  H   F V  +++ L    
Sbjct: 120 NELQGLTLVDTNKDPKTRLQEFLQSRACELPRYEVVDIQGEPHCRTFFVECQVALLNDKT 179

Query: 202 QGMDCSKRAAEQ 213
            G   S+R AEQ
Sbjct: 180 HGQGASRRIAEQ 191


>gi|323526859|ref|YP_004229012.1| ribonuclease III [Burkholderia sp. CCGE1001]
 gi|323383861|gb|ADX55952.1| ribonuclease III [Burkholderia sp. CCGE1001]
          Length = 475

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 102/205 (49%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPSSPLESRLRYEFRNAELLRQALTHRSHSSTH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD +E+++
Sbjct: 58  GKLDEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADTLEAVL 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG E A T + + +      +      +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFEAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202


>gi|307718753|ref|YP_003874285.1| hypothetical protein STHERM_c10670 [Spirochaeta thermophila DSM
           6192]
 gi|306532478|gb|ADN02012.1| hypothetical protein STHERM_c10670 [Spirochaeta thermophila DSM
           6192]
 gi|315185644|gb|EFU19412.1| RNAse III [Spirochaeta thermophila DSM 6578]
          Length = 194

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 61/185 (32%), Positives = 97/185 (52%), Gaps = 2/185 (1%)

Query: 39  SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
             ERLEFLGD +LGL ++  L+  F   +EGEL+   + +VS +T  ++AR + + +FI 
Sbjct: 3   DNERLEFLGDAVLGLAVADYLYRTFPEKQEGELARIKSFVVSEDTLYEIARRIKVDNFIL 62

Query: 99  VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRD 156
           +S            ++ AD +E++I A +LD G E A  FV +       K    + ++D
Sbjct: 63  ISKGEEYAGGRTKKALLADAMEAIIGAYFLDAGFEAARDFVLRLVVPEIEKVVENRHKKD 122

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            KT LQE+    F   P Y+V  + GP+H+  F + V+I       G   +K+ AEQ AA
Sbjct: 123 YKTLLQEYVQKNFKTYPRYRVVEKLGPEHNRTFRIEVQIRDKKYGPGEGKNKKEAEQSAA 182

Query: 217 AEVLK 221
           +   +
Sbjct: 183 SIAYR 187


>gi|161621443|ref|NP_108012.2| ribonuclease III [Mesorhizobium loti MAFF303099]
          Length = 237

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 101/205 (49%), Positives = 131/205 (63%), Gaps = 1/205 (0%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
             L +R G+AFA+R  L++ALTH+S    +    YER EFLGDR+LGL+++ +L   F  
Sbjct: 14  EALVERTGHAFADRQRLQRALTHASARGANAGTDYERFEFLGDRVLGLVVADMLLAAFPD 73

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A EGELS+R N+LV+AE  S++A  + L   IR  SD+R        +++AD +ESLIA 
Sbjct: 74  AAEGELSLRLNALVNAEALSEIAEHIGLPDLIRAGSDVRGLEGRKRVNLRADALESLIAV 133

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           LYLDGG+E A  F+ KYW+ R+  SG  RRDAKTELQEWAH      P Y++  R GPDH
Sbjct: 134 LYLDGGLEAARAFIHKYWQPRSQASGAARRDAKTELQEWAHQAASAVPAYQIDSREGPDH 193

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRA 210
           DP FTV V +    PA G   SKR 
Sbjct: 194 DPLFTVSVRVGAFQPATGSGRSKRE 218


>gi|218440872|ref|YP_002379201.1| ribonuclease III [Cyanothece sp. PCC 7424]
 gi|218173600|gb|ACK72333.1| Ribonuclease III [Cyanothece sp. PCC 7424]
          Length = 228

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 59/204 (28%), Positives = 92/204 (45%), Gaps = 12/204 (5%)

Query: 18  ANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
            N+ L   ALTH S  + +   +E  ERLEFLGD +L  +    L+  +    E +LS  
Sbjct: 8   KNQQLWLCALTHRSYVNEHLEIKEHNERLEFLGDAVLAFVAGEFLYQRYPHLSEAQLSRL 67

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
              LV     ++ A +L +   +R+     KD      ++ +D  E++I A +LD GI+ 
Sbjct: 68  RARLVDETQLAKFAVQLGIGQLMRLGKGAIKDGGRENPALLSDTFEAIIGAYFLDAGIDA 127

Query: 135 AGTFVDKYWK---------QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
              FV   ++         Q  + + +   D K   Q+W  A F   PEY +   SGPDH
Sbjct: 128 VREFVRPLFQSVADILMVAQSEILTSEKLLDPKNRFQQWTLANFTQNPEYVIIEESGPDH 187

Query: 186 DPRFTVVVEISGLAPAQGMDCSKR 209
              FT  V++ G+    G    K+
Sbjct: 188 AKEFTAQVKVQGIVYGIGRGRRKQ 211


>gi|319639176|ref|ZP_07993927.1| ribonuclease 3 [Neisseria mucosa C102]
 gi|317399360|gb|EFV80030.1| ribonuclease 3 [Neisseria mucosa C102]
          Length = 239

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 65/219 (29%), Positives = 112/219 (51%), Gaps = 6/219 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           +  ++KR+GY F N  LL++ALTH S +    +  ER EF+GD IL   ++ +LF+ F  
Sbjct: 11  HRAIQKRLGYEFRNMELLQQALTHRSYN---AKHNERFEFVGDSILNYSVARMLFDAFPK 67

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    +LV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 68  LSEGELSRMRAALVNEGVLAEIALEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +  D     A   V   + +R  ++     ++D+KT LQE   A+    P+Y++  ++  
Sbjct: 128 VSFDADFSAAEKVVRHLFAERVKRADLNIGKKDSKTALQEALQARRFALPKYRIEEQAEQ 187

Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221
             D  F +  ++  L         S++ AEQ AA E L+
Sbjct: 188 TADAMFVISCDLGELGFICNARGSSRKVAEQKAACEALE 226


>gi|307730527|ref|YP_003907751.1| ribonuclease III [Burkholderia sp. CCGE1003]
 gi|307585062|gb|ADN58460.1| ribonuclease III [Burkholderia sp. CCGE1003]
          Length = 420

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 102/205 (49%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPSSPLESRLRYEFRNAELLRQALTHRSHSSTH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD +E+++
Sbjct: 58  GKLDEGDLSRVRANLVKQQSLYELAQALNISEGLRLGEGELRSGGFRRPSILADTLEAVL 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG E A T + + +      +      +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFEAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLEVKVSGSG 202


>gi|298346956|ref|YP_003719643.1| ribonuclease III [Mobiluncus curtisii ATCC 43063]
 gi|298237017|gb|ADI68149.1| ribonuclease III [Mobiluncus curtisii ATCC 43063]
          Length = 249

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 72/214 (33%), Positives = 110/214 (51%), Gaps = 14/214 (6%)

Query: 7   STLEKRI---GYAFANRSLLEKALTHSSISHSYQES-----YERLEFLGDRILGLLISTL 58
           +TLE+ +   G    +  LL  A+TH S +H + ++      ERLEFLGD +L ++++  
Sbjct: 19  ATLERLLADWG-QPVDTELLVVAMTHRSFAHEHGKTGSTGTNERLEFLGDAVLQIVVTEY 77

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF +F    EGEL+    + VS    ++VAR L L  +I +     +       SI +D 
Sbjct: 78  LFRNFPDVPEGELAPMRAATVSQTPLAEVARRLHLGDYILLGIGEDRQGGREKDSILSDT 137

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEY 175
           +E+LI A YL  G+E     ++++ + R L++   R    D KT L E+A A     PEY
Sbjct: 138 LEALIGASYLTSGLESTRVTIERHLR-RYLRNAPRRAVGMDWKTHLSEFAAANSLGEPEY 196

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            V   SGPDH   FT  + I+G    +G   SK+
Sbjct: 197 -VVQGSGPDHARVFTAQIRIAGEVLGEGQGTSKK 229


>gi|167837348|ref|ZP_02464231.1| ribonuclease III [Burkholderia thailandensis MSMB43]
          Length = 452

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 63/199 (31%), Positives = 97/199 (48%), Gaps = 6/199 (3%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           E R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F    EG
Sbjct: 2   ESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRFGKLDEG 58

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           +LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I A+++D
Sbjct: 59  DLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVFVD 118

Query: 130 GGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           GG E A   + + +      +      +DAKT LQE+        P Y V    G  H+ 
Sbjct: 119 GGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQ 178

Query: 188 RFTVVVEISGLAP-AQGMD 205
           +F V   +  L     G  
Sbjct: 179 QFEVECTVPKLDIKVSGSG 197


>gi|81776564|sp|Q985A6|RNC_RHILO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|14027203|dbj|BAB54157.1| ribonuclease III [Mesorhizobium loti MAFF303099]
          Length = 221

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 100/201 (49%), Positives = 130/201 (64%), Gaps = 1/201 (0%)

Query: 11  KRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           +R G+AFA+R  L++ALTH+S    +    YER EFLGDR+LGL+++ +L   F  A EG
Sbjct: 2   ERTGHAFADRQRLQRALTHASARGANAGTDYERFEFLGDRVLGLVVADMLLAAFPDAAEG 61

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           ELS+R N+LV+AE  S++A  + L   IR  SD+R        +++AD +ESLIA LYLD
Sbjct: 62  ELSLRLNALVNAEALSEIAEHIGLPDLIRAGSDVRGLEGRKRVNLRADALESLIAVLYLD 121

Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
           GG+E A  F+ KYW+ R+  SG  RRDAKTELQEWAH      P Y++  R GPDHDP F
Sbjct: 122 GGLEAARAFIHKYWQPRSQASGAARRDAKTELQEWAHQAASAVPAYQIDSREGPDHDPLF 181

Query: 190 TVVVEISGLAPAQGMDCSKRA 210
           TV V +    PA G   SKR 
Sbjct: 182 TVSVRVGAFQPATGSGRSKRE 202


>gi|241758554|ref|ZP_04756671.1| ribonuclease III [Neisseria flavescens SK114]
 gi|241321297|gb|EER57457.1| ribonuclease III [Neisseria flavescens SK114]
          Length = 239

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 65/219 (29%), Positives = 112/219 (51%), Gaps = 6/219 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           +  ++KR+GY F N  LL++ALTH S +    +  ER EF+GD IL   ++ +LF+ F  
Sbjct: 11  HRAIQKRLGYEFRNMELLQQALTHRSYN---AKHNERFEFVGDSILNYSVARMLFDAFPK 67

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    +LV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 68  LSEGELSRMRAALVNEGVLAEIALEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +  D     A   V   + +R  ++     ++D+KT LQE   A+    P+Y++  ++  
Sbjct: 128 VSFDADFSAAEKVVRHLFAERVKRADLNIGKKDSKTALQEALQARRFALPKYRIEEQAEQ 187

Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221
             D  F +  ++  L         S++ AEQ AA E L+
Sbjct: 188 TADAMFVISCDLGELGFICNARGSSRKVAEQKAACEALE 226


>gi|167570687|ref|ZP_02363561.1| ribonuclease III [Burkholderia oklahomensis C6786]
          Length = 454

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 64/199 (32%), Positives = 97/199 (48%), Gaps = 6/199 (3%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           E R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F    EG
Sbjct: 2   ESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRFSKLDEG 58

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           +LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I A++LD
Sbjct: 59  DLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVFLD 118

Query: 130 GGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           GG E A   + + +      +      +DAKT LQE+        P Y V    G  H+ 
Sbjct: 119 GGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQ 178

Query: 188 RFTVVVEISGL-APAQGMD 205
           +F V   +  L     G  
Sbjct: 179 QFEVECTVPKLDVKVSGSG 197


>gi|312140459|ref|YP_004007795.1| ribonuclease iii [Rhodococcus equi 103S]
 gi|325675924|ref|ZP_08155607.1| ribonuclease III [Rhodococcus equi ATCC 33707]
 gi|311889798|emb|CBH49115.1| ribonuclease III [Rhodococcus equi 103S]
 gi|325553162|gb|EGD22841.1| ribonuclease III [Rhodococcus equi ATCC 33707]
          Length = 256

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 108/223 (48%), Gaps = 9/223 (4%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61
             + +L   +G       LL  ALTH S ++ +    + ERLEFLGD +LGL I+  L+ 
Sbjct: 15  EDHGSLLAALGVPLT-EDLLTLALTHRSYAYEHGGLPTNERLEFLGDSVLGLTITERLYT 73

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVAR---ELDLASFIRVSSDLRKDVCSFMTSIQADV 118
                 EGEL+    S+V+    ++VAR      L + + +             SI AD 
Sbjct: 74  AHPEKSEGELAKIRASIVNMHALAEVARGLGPGGLGAHLLLGKGEEMTGGRDKPSILADG 133

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYK 176
           +ESL+ A++L+ GI+ A   V   +     ++ K     D KT LQE    +    P Y+
Sbjct: 134 MESLLGAIHLEHGIDTARRVVLDLFADLLSRAPKLGAGLDWKTSLQELTAERGIGVPSYE 193

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           +T  +GPDHD  FT  V + G A   G+  SK+ AEQ AA+  
Sbjct: 194 ITA-TGPDHDKEFTATVVVGGDAFGVGVGRSKKEAEQKAASTA 235


>gi|150402698|ref|YP_001329992.1| ribonuclease III [Methanococcus maripaludis C7]
 gi|150033728|gb|ABR65841.1| Ribonuclease III [Methanococcus maripaludis C7]
          Length = 229

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 101/224 (45%), Gaps = 7/224 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
            +  L  ++   F +  + ++A  HSS  +  +    E  ERLE+LGD +L L+IS  LF
Sbjct: 3   NFEKLLSKLDIKFNDLDIFKRAFMHSSYVNEQKNTNLEDNERLEYLGDAVLELIISEYLF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
              +S  EGE+S      V        A++L    ++ +             +I +DV E
Sbjct: 63  KK-ESLSEGEMSKLRAKYVCESALFTYAKKLKFNDYVLLGKGELNSKGYNKPAIISDVFE 121

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + IAA+YLD G++ A  FV+ +      + S +   D KT LQE+       T EY    
Sbjct: 122 AFIAAIYLDQGLDSAKKFVNNHIIPIIEENSKELFIDYKTRLQEF-PELNNKTIEYINLE 180

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             G  HD +F V V+       +G   SK+ AE  AA   L + 
Sbjct: 181 EVGEPHDKKFIVAVKSGRKMLGKGTGKSKKEAEMKAAKNALLKL 224


>gi|260462323|ref|ZP_05810531.1| ribonuclease III [Mesorhizobium opportunistum WSM2075]
 gi|259031817|gb|EEW33085.1| ribonuclease III [Mesorhizobium opportunistum WSM2075]
          Length = 237

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 101/205 (49%), Positives = 129/205 (62%), Gaps = 1/205 (0%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHFDS 65
             L +R G+AFA+R  L++ALTH+S   +     YER EFLGDR+LGL+++ +L   F  
Sbjct: 14  EALVERTGHAFADRQRLQRALTHASARGANAGIDYERFEFLGDRVLGLVVADMLLAAFPD 73

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A EGELS+R N+LV+AE  S +A  + L   IR  SD+R        +++AD +ESLIA 
Sbjct: 74  AAEGELSLRLNALVNAEALSDIAEHIGLPDLIRAGSDIRGLDGRKRVNLRADALESLIAV 133

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           LYLDGG+E A  F+ KYW  R+  SG  RRDAKTELQEWAH      P Y++  R GPDH
Sbjct: 134 LYLDGGLEAARAFIHKYWLPRSQASGAARRDAKTELQEWAHQAASAVPAYQIDSREGPDH 193

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRA 210
           DP FTV V +    PA G   SKR 
Sbjct: 194 DPLFTVSVRVGTFQPAVGSGRSKRE 218


>gi|295396031|ref|ZP_06806215.1| ribonuclease III [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971119|gb|EFG47010.1| ribonuclease III [Brevibacterium mcbrellneri ATCC 49030]
          Length = 230

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 71/220 (32%), Positives = 102/220 (46%), Gaps = 6/220 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
           S L KR+G    +   L  +LTH S +       + ERLEFLGD +L L  +  LF+H  
Sbjct: 2   SELNKRLGVDI-DPETLRLSLTHRSYAFENGGIPTNERLEFLGDAVLQLKTTKWLFDHNT 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            A EG L+   +++V++   + VAR   +  F+ + +   +       SI AD VE++I 
Sbjct: 61  EASEGRLAKMRSAVVNSRALAGVARTYGIGEFLLLGNGEERTGGRDKDSILADTVEAIIG 120

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A Y+  G + A   V++        +       D KT LQE A         Y VT   G
Sbjct: 121 ACYVSQGPDAANALVERLVGPLLEDAVNLGAGMDYKTTLQEAAADLSLGAVHYDVTGE-G 179

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           PDH   FT V  +     A G   SK+ AE VAA   +K+
Sbjct: 180 PDHARVFTAVAYLGETRWASGEGTSKKNAELVAAEIAVKK 219


>gi|295698532|ref|YP_003603187.1| ribonuclease III [Candidatus Riesia pediculicola USDA]
 gi|291157177|gb|ADD79622.1| ribonuclease III [Candidatus Riesia pediculicola USDA]
          Length = 227

 Score =  218 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 118/223 (52%), Gaps = 12/223 (5%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L+K IGY F +   L ++LTH S + S+    ERLEFLGD IL L+IS  L++ F S  E
Sbjct: 2   LQKNIGYRFNHLDFLYQSLTHRSTNLSH---NERLEFLGDSILNLIISKFLYDEFLSKNE 58

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GE+S   ++LV   T S +A +L + SFI +     K+      SI ++ +E++I A++L
Sbjct: 59  GEMSRTRSNLVKEGTLSDIANQLGIGSFINLGLGEIKNHGFLKRSILSNALEAIIGAIFL 118

Query: 129 DGG--IEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           D G  I+     +  +++  A  +   +  +D KT+LQE         P+Y++    G D
Sbjct: 119 DSGSNIKTIENVIMNWYRNHADLINLSRDEKDPKTKLQEHLQKFHLPLPKYELLKSVGYD 178

Query: 185 HDPRFTVVVEISGLA-----PAQGMDCSKRAAEQVAAAEVLKR 222
           H+ +FT+V ++ G          G     + AE++AA  +  +
Sbjct: 179 HEKQFTIVCKVFGFRKSDHFITIGTGKKYKEAEKLAAKHMFDK 221


>gi|297717874|gb|ADI50080.1| ribonuclease III [Candidatus Odyssella thessalonicensis L13]
          Length = 211

 Score =  218 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 66/210 (31%), Positives = 122/210 (58%), Gaps = 5/210 (2%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71
           ++ + F + SL +KA+TH S        +ERLEFLGDR+LG++++ +L+  F   KEG+L
Sbjct: 2   KLKFTFKDPSLFDKAITHPSFRRRKVNDFERLEFLGDRVLGIIVAEMLYKAFPLEKEGDL 61

Query: 72  SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131
           + R   L+S + C ++A E++L   I+V            +++ +D +E+LI A++LD G
Sbjct: 62  AKRQAVLISRDVCQEIAYEIELHEDIKV----VGTGLDGNSAVLSDAMEALIGAMFLDQG 117

Query: 132 IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
           +EV    +   W++R   +    +D K+ LQEW  ++    P Y++  ++GP H P F +
Sbjct: 118 LEVTRQHILPLWEKRLAITQAPPKDHKSLLQEWTQSRGLGIPAYELVNQTGPAHAPEFEI 177

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           ++++   +  +    S++ AEQ AA ++L+
Sbjct: 178 LLKVDDHSV-KARGKSRKLAEQEAAKQMLQ 206


>gi|295105981|emb|CBL03524.1| RNAse III [Gordonibacter pamelaeae 7-10-1-b]
          Length = 281

 Score =  218 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 79/223 (35%), Positives = 111/223 (49%), Gaps = 4/223 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNH 62
           + +  ++ + Y F +  LL  A+TH S +   S + SYERLEFLGD ILG +++ + F+ 
Sbjct: 10  KLARAQEILDYRFDSEHLLLSAITHPSATEGKSVKYSYERLEFLGDSILGAIVAAIAFHR 69

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L+    +LVS  + S VA  L  A  I   S         + S   +V E++
Sbjct: 70  FHDLDEGGLTRIKVALVSGASLSDVADRLGFADVIVFGSSETGTGKRGLHSALENVYEAV 129

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +AALYLDGGI  A  FV++    R  L   +   + K+ LQE      G+TP YK+    
Sbjct: 130 VAALYLDGGIGAAQEFVERTLIPRMSLDMAREPENPKSALQEKLQED-GITPTYKLVETQ 188

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           GP HD  F   V       A+G   +K+ AE  AA   L R G
Sbjct: 189 GPPHDRTFVAQVFAGTQGLARGTGRTKKEAESQAAKSTLARLG 231


>gi|325265700|ref|ZP_08132389.1| ribonuclease III [Kingella denitrificans ATCC 33394]
 gi|324982831|gb|EGC18454.1| ribonuclease III [Kingella denitrificans ATCC 33394]
          Length = 242

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 66/216 (30%), Positives = 108/216 (50%), Gaps = 6/216 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            L++R+GY F    LL++ALTH S     + + ERLEF+GD I+  +++ +L++ F    
Sbjct: 12  QLQQRLGYTFRQPELLQQALTHRSAG---KNNNERLEFVGDGIVNFVVAQMLYHAFPDLP 68

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG LSV    LV     +++AREL + + + +     K       SI AD +E+L AA+ 
Sbjct: 69  EGRLSVLRTHLVKEAALAEMARELGVGAALTLGVGELKSGGHDRPSILADALEALFAAIR 128

Query: 128 LDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           LD  +      + + + QR   +   +  +D KT LQE   A     P+Y++  ++G   
Sbjct: 129 LDADLPTVERIIQQLFSQRIAHIDQHQPAKDNKTRLQEALQACRLPLPKYRIEKQTGEGE 188

Query: 186 DPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVL 220
             +F V  ++  L         S+R AEQ  A + L
Sbjct: 189 HAQFDVSCDLGELGKITYAHAHSRREAEQECARQAL 224


>gi|29840106|ref|NP_829212.1| ribonuclease III [Chlamydophila caviae GPIC]
 gi|33301541|sp|Q823R4|RNC_CHLCV RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|29834454|gb|AAP05090.1| ribonuclease III [Chlamydophila caviae GPIC]
          Length = 237

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 63/224 (28%), Positives = 102/224 (45%), Gaps = 4/224 (1%)

Query: 1   MSA-LRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLIS 56
           M+  +    +E ++ + F    LL  ALTH S  +      E  ERLEFLGD +L L+++
Sbjct: 1   MNNLINIKEVEAKLNFTFTQPKLLVTALTHPSYRNETVTITEDSERLEFLGDAVLCLIVT 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  F S  EG LS    +L++A +C Q    L L   + +    R       TS  A
Sbjct: 61  EHLFLLFPSMDEGTLSTARAALINAVSCCQYTDALGLGEHLLIGKGERIQNERGRTSAYA 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           ++ E+++ A+YLDGG+  A          +         + K  LQ+    +    P Y+
Sbjct: 121 NLFEAVLGAVYLDGGLAPARQITVPLLPSKKDILPLMLGNPKNRLQQLTQKQLRTLPVYQ 180

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            T  +     P + + V ++     +G   SK+ AE++AA + L
Sbjct: 181 CTPWTSQQGVPGYHIRVIVNDEVWGEGCALSKKEAEKLAAQKAL 224


>gi|229140493|ref|ZP_04269048.1| Ribonuclease 3 [Bacillus cereus BDRD-ST26]
 gi|228643054|gb|EEK99330.1| Ribonuclease 3 [Bacillus cereus BDRD-ST26]
          Length = 210

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 57/191 (29%), Positives = 89/191 (46%), Gaps = 5/191 (2%)

Query: 24  EKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
            +A THSS  + ++    E  ERLEFLGD +L L +S  LF  + +  EGEL+    ++V
Sbjct: 2   IQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIV 61

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
              +  + A EL   S + +             ++ ADV E+ I ALYLD G+E    F+
Sbjct: 62  CEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEAFIGALYLDQGLETVWGFL 121

Query: 140 DKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
            +    +  +       D K++LQE          EY++    GP H+  F   V ++ +
Sbjct: 122 KEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVTLNNV 181

Query: 199 APAQGMDCSKR 209
           A   G   SK+
Sbjct: 182 ALGLGSGKSKK 192


>gi|269838233|ref|YP_003320461.1| ribonuclease III [Sphaerobacter thermophilus DSM 20745]
 gi|269787496|gb|ACZ39639.1| ribonuclease III [Sphaerobacter thermophilus DSM 20745]
          Length = 259

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 68/209 (32%), Positives = 96/209 (45%), Gaps = 10/209 (4%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSY--------QESYERLEFLGDRILGLLISTLLFNH 62
           +R+G  F +  LL  ALTH S  +          ++S ERLEFLGD +LG++ +  L+  
Sbjct: 24  QRLGIEFRDLDLLRLALTHRSYLNELGISQIEAVRDSNERLEFLGDSVLGMITAEFLYRR 83

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L+    +LV  ET ++ AR   L   + +              I A   E++
Sbjct: 84  FPRLPEGMLTAYRTALVRTETLARWARRFGLDELLYLGRGEITADGEIRDRILAGAFEAV 143

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           IAA+YLD GI     F+ +   + A  + +     + K  LQE       VTP Y+    
Sbjct: 144 IAAIYLDRGIRATRRFLRQLLIEDAEQIITEGQETNYKGRLQELVQEHMRVTPMYRTVAV 203

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           SGP HD  FTV V + G     G   SKR
Sbjct: 204 SGPAHDRVFTVEVVVGGECLGVGTGSSKR 232


>gi|78186018|ref|YP_374061.1| ribonuclease III [Chlorobium luteolum DSM 273]
 gi|90101633|sp|Q3B6L3|RNC_PELLD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|78165920|gb|ABB23018.1| RNAse III [Chlorobium luteolum DSM 273]
          Length = 276

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 65/207 (31%), Positives = 96/207 (46%), Gaps = 7/207 (3%)

Query: 21  SLLEKALTHSSISH-----SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
            L   ALTH S+ H         S +RLEFLGD +LGL+IS  L+  F    EGELS   
Sbjct: 46  ELYATALTHRSMVHDTTAPEITRSNQRLEFLGDSVLGLIISEYLYRRFPEGTEGELSSYR 105

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
             +V+ ++ +  AR LDL   + +     +      TS  AD  E+L  A+YLD G++  
Sbjct: 106 AKIVNGKSLAGFARNLDLGIHLIIGESADQQRIRTSTSTLADAFEALTGAIYLDRGLDAV 165

Query: 136 GTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
             F+++                + K+ L E   +     P Y V    G +H+  FT+ V
Sbjct: 166 REFIEEQIIDSPAFEAMVSTENNHKSRLIEHTQSHQLPPPVYTVLSEEGAEHEKTFTIEV 225

Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVL 220
             +G    +G    K+ AEQ+AA E +
Sbjct: 226 SCNGRRLGRGTALRKKDAEQLAAEEAM 252


>gi|46201860|ref|ZP_00208277.1| COG0571: dsRNA-specific ribonuclease [Magnetospirillum
           magnetotacticum MS-1]
          Length = 230

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 80/211 (37%), Positives = 113/211 (53%), Gaps = 4/211 (1%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62
           + L   +G+AFA   LL +ALTH S     +    + YERLEFLGDR+LGL+++ +LF  
Sbjct: 6   ADLPALLGHAFARPELLSQALTHPSTQQHRRSQGSDPYERLEFLGDRVLGLVVAEMLFLR 65

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L+ R  +LV  E  +++A E+ L   + ++             I AD  E++
Sbjct: 66  FPDEAEGALARRHAALVRREAVARIANEIGLGRHLVLAKGESDAGGRTNPGILADACEAV 125

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           I ALY D G  VA  FV   W+    ++    +DAKT LQEWA  +    P YK+  + G
Sbjct: 126 IGALYADAGFAVAAAFVRSRWEPMMEEALAPPKDAKTGLQEWAQGRGKPLPAYKMLGQEG 185

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
           P H+P F + V + G+  A G   SKR AEQ
Sbjct: 186 PPHEPTFLMEVSVEGVGSAVGRGASKRVAEQ 216


>gi|312877236|ref|ZP_07737204.1| ribonuclease III [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795950|gb|EFR12311.1| ribonuclease III [Caldicellulosiruptor lactoaceticus 6A]
          Length = 222

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 114/223 (51%), Gaps = 11/223 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             +E+ +GY F +++LL  ALTH S +HS +  YERLEFLGD  L L +S  LF HF   
Sbjct: 2   EEIERALGYTFKDKNLLRLALTHKSATHSNKNCYERLEFLGDAALELAVSKYLFVHFPEL 61

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGEL+    ++V ++T S+VA +L+L + I      + +      SI ADV+E++  A+
Sbjct: 62  SEGELTNIRAAVVCSQTLSKVAEKLNLKNHIIFGKREKMEKFHENKSILADVLEAIFGAI 121

Query: 127 YLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEY---KVTFRS 181
           +++ G ++    +    K    K+  GK   D KT+LQE    +      Y   ++  + 
Sbjct: 122 FIESGFDIVEKIIVNLLKPYIQKAVTGKLFYDYKTKLQEIVQREGNKKIVYKDCEIIEK- 180

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
                  F   + I G   ++G   SK+ A+Q AA + L   G
Sbjct: 181 -----KYFKSELFIEGKKVSEGYGTSKKEAQQDAAYKFLLEMG 218


>gi|16331055|ref|NP_441783.1| ribonuclease III [Synechocystis sp. PCC 6803]
 gi|2500554|sp|P74368|RNC1_SYNY3 RecName: Full=Ribonuclease 3 1; AltName: Full=Ribonuclease III 1;
           Short=RNase III 1
 gi|1653550|dbj|BAA18463.1| ribonuclease III [Synechocystis sp. PCC 6803]
          Length = 231

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 77/220 (35%), Positives = 112/220 (50%), Gaps = 12/220 (5%)

Query: 19  NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           +  L  +ALTH S  + +    SY+RLEFLGD +LG ++  +LF  +    E EL+   +
Sbjct: 11  DPQLKLEALTHRSYCNEHPGTPSYDRLEFLGDAVLGFVVGRILFERYPHFTEAELTRLRS 70

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
            LV+    + +AR L +A  IR+S  L +D      SI ADV ESL+ A  LD G+    
Sbjct: 71  QLVNQNQLAYLARFLHIAPEIRLSQSLARDDGQSSPSILADVFESLLGAALLDRGLTAVE 130

Query: 137 TFVDKYWKQRALKSGKFR----------RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
            F+ + +     +  K +           D K+ LQ+WA AK    PEY++   SGP H 
Sbjct: 131 DFIQELFVPILEQWEKSQDGRSPKLVPTMDVKSMLQQWALAKTKQLPEYELINTSGPPHA 190

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
             FT  V+++G    QG   SK+ A + AA E LK  G+ 
Sbjct: 191 QEFTFTVKVAGKIHGQGSGPSKQIATKQAALEALKSLGLL 230


>gi|187924875|ref|YP_001896517.1| ribonuclease III [Burkholderia phytofirmans PsJN]
 gi|187716069|gb|ACD17293.1| Ribonuclease III [Burkholderia phytofirmans PsJN]
          Length = 418

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 65/205 (31%), Positives = 102/205 (49%), Gaps = 6/205 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  S LE R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F
Sbjct: 1   MPLSPLESRLRYEFRNAELLRQALTHRSHSSTH---NERLEFLGDSVLNCAVAALLFQRF 57

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG+LS    +LV  ++  ++A+ L+++  +R+     +       SI AD +E+++
Sbjct: 58  GKLDEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADTLEAVL 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A++LDGG + A T + + +      +      +DAKT LQE+        P Y V    
Sbjct: 118 GAVFLDGGFDAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATH 177

Query: 182 GPDHDPRFTVVVEISGL-APAQGMD 205
           G  H+ +F V   +  L     G  
Sbjct: 178 GAAHNQQFEVECTVPKLDVKVSGSG 202


>gi|87199824|ref|YP_497081.1| ribonuclease III [Novosphingobium aromaticivorans DSM 12444]
 gi|87135505|gb|ABD26247.1| RNAse III [Novosphingobium aromaticivorans DSM 12444]
          Length = 252

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 87/208 (41%), Positives = 114/208 (54%), Gaps = 3/208 (1%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           G A A   +  +ALTH S+       Y+RLEFLGDR+LGL I+  L      A EG+LS 
Sbjct: 45  GAAPARPEIWAEALTHGSMGEP--RDYQRLEFLGDRVLGLAIADWLHEK-SDAAEGKLSQ 101

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           R N+LVS ETC+ VAR + LA  IR+    R D  +   +I  DV+E+LI AL+++ G E
Sbjct: 102 RLNALVSRETCADVARTIGLAGHIRLGKQARDDGGAQSDNILGDVMEALIGALFVERGFE 161

Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
            A  FV K W++  L     R+  K  LQEWA       P Y +  R GPDH   FTV V
Sbjct: 162 AARKFVRKAWEKPMLSGTGQRKHPKAALQEWAAGNRRKPPVYTLVSREGPDHAATFTVSV 221

Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           E+ G+  A     SK+ AE  AA   ++
Sbjct: 222 EVKGVGEASARGSSKQEAETAAARAFMQ 249


>gi|167586632|ref|ZP_02379020.1| ribonuclease III [Burkholderia ubonensis Bu]
          Length = 278

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 64/199 (32%), Positives = 97/199 (48%), Gaps = 6/199 (3%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           E R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F    EG
Sbjct: 2   ESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRFGKLDEG 58

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           +LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I A++LD
Sbjct: 59  DLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVFLD 118

Query: 130 GGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           GG E A   + + +      +      +DAKT LQE+        P Y V    G  H+ 
Sbjct: 119 GGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQ 178

Query: 188 RFTVVVEISGL-APAQGMD 205
           +F V   +  L     G  
Sbjct: 179 QFEVECTVPKLDVKVSGSG 197


>gi|111225163|ref|YP_715957.1| ribonuclease III [Frankia alni ACN14a]
 gi|111152695|emb|CAJ64436.1| Ribonuclease III (RNase III) [Frankia alni ACN14a]
          Length = 272

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 67/203 (33%), Positives = 101/203 (49%), Gaps = 8/203 (3%)

Query: 19  NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           +  LL++ALTH S ++      + ERLEFLGD +LGL+++  LF       EG+L+ +  
Sbjct: 23  DPELLDRALTHRSYAYEKGGLPTNERLEFLGDAVLGLVVTAALFLRHPDLPEGQLAKQRA 82

Query: 77  SLVSAETCSQVARELD---LASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           S+V+    + VAR +    L  ++ +             SI AD +E++I A+YL  G++
Sbjct: 83  SVVNMRALADVARGIGPDGLGPYLLLGRGEETTGGRDKASILADTLEAIIGAVYLSAGLD 142

Query: 134 VAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
            A  FV + +     ++       D KT LQE         PEY V   +GPDH  RFT 
Sbjct: 143 AASIFVHRLFDPLLDEAAGRGAGLDWKTSLQEQTALLALGPPEY-VVEEAGPDHAKRFTA 201

Query: 192 VVEISGLAPAQGMDCSKRAAEQV 214
              I+G    +G   SK+ AEQ 
Sbjct: 202 HARIAGEPLGEGEGGSKKEAEQR 224


>gi|329770217|ref|ZP_08261607.1| ribonuclease III [Gemella sanguinis M325]
 gi|328837023|gb|EGF86667.1| ribonuclease III [Gemella sanguinis M325]
          Length = 237

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 67/223 (30%), Positives = 100/223 (44%), Gaps = 5/223 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
            + L K   +     +    A +HSS ++  +     +YERLEFLGD ++ L  S  LF 
Sbjct: 10  LNKLNKDYNFNLKYSNNFRMAFSHSSYTNEKRIAKHLNYERLEFLGDAVVELTTSEFLFK 69

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F +  EGEL+    S+V  +T  + A +L+L   I +     K       ++ AD+ ES
Sbjct: 70  KFPNLAEGELTKLRASIVCEKTLVKYALQLNLDKCIFLGKGEEKMGGRSRAALLADIFES 129

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTFR 180
              A+YL+ G+E   TF+                 D KT LQE+         EY V   
Sbjct: 130 FTGAMYLEAGLETVKTFLSNTLFTEVDSFEYLSFVDYKTILQEYVSKIKLGVIEYTVLDS 189

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           SGP H   FT  V I G     G   +K+ +EQ++A   L++ 
Sbjct: 190 SGPSHLKTFTSAVIIDGKQYGSGTAKTKKESEQLSAKAALEKL 232


>gi|296139284|ref|YP_003646527.1| ribonuclease III [Tsukamurella paurometabola DSM 20162]
 gi|296027418|gb|ADG78188.1| ribonuclease III [Tsukamurella paurometabola DSM 20162]
          Length = 249

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 64/213 (30%), Positives = 104/213 (48%), Gaps = 9/213 (4%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
            A   + L + +G    +  LL  ALTH S ++      + ERLEFLGD +LG+ ++  L
Sbjct: 9   PASDRTPLLEALGVELDD-ELLTLALTHRSYAYEAGGLPTNERLEFLGDSVLGISVTEWL 67

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQA 116
           +       EGEL+    S+V+    ++VAR+L    L + + +             SI A
Sbjct: 68  YVTHPDKPEGELAKIRASVVNMHALARVARKLGEGGLGAHLYLGRGEELTGGRDKDSILA 127

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPE 174
           D +E+L+ A++++ GI+ A + V + ++     S       D KT LQE    +    P 
Sbjct: 128 DGMEALLGAVHIEHGIDTARSVVLRLFEPMLTTSSTMGAGLDWKTSLQELTAERDLGVPA 187

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           Y++T  +GPDHD  FT VV I      +G+  +
Sbjct: 188 YRITS-TGPDHDKEFTAVVVIDEADLGEGVGRT 219


>gi|302525051|ref|ZP_07277393.1| ribonuclease III [Streptomyces sp. AA4]
 gi|302433946|gb|EFL05762.1| ribonuclease III [Streptomyces sp. AA4]
          Length = 246

 Score =  218 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 73/229 (31%), Positives = 109/229 (47%), Gaps = 9/229 (3%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
            A   ++L + +G    +  LL  +LTH S ++ +      ERLEFLGD +LGL+++  L
Sbjct: 9   PAADPASLLEALGVEL-DPELLRLSLTHRSYAYEHGGLPPNERLEFLGDAVLGLVVTDHL 67

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVAR---ELDLASFIRVSSDLRKDVCSFMTSIQA 116
           +       EG+L+    S+V+    + VAR   E  L + + +             SI A
Sbjct: 68  YTTHPDLPEGQLAKLRASVVNMHALAGVARGLGEGGLGAHLLLGKGEELTGGRDKASILA 127

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPE 174
           D +E++I A YL  GIEVA   V   +     ++       D KT LQE   +     PE
Sbjct: 128 DGLEAVIGATYLAHGIEVARKLVHHLFDGLLAEAPLRGAGLDWKTSLQELTASGGLGVPE 187

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           Y+V   SGPDH   FT  V ++G A  +G   +K+ AEQ AA    +  
Sbjct: 188 YRVED-SGPDHRKEFTATVLVAGRALGEGNGTTKKEAEQKAAETAWRAL 235


>gi|315604391|ref|ZP_07879457.1| ribonuclease III [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315314097|gb|EFU62148.1| ribonuclease III [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 241

 Score =  218 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 63/210 (30%), Positives = 96/210 (45%), Gaps = 7/210 (3%)

Query: 20  RSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
            +LL+ AL H S ++      + ERLEFLGD +L ++I+  L+  +    E +LS    +
Sbjct: 28  PTLLQLALVHRSYANEAGGIANNERLEFLGDSVLSIVIAQKLYEQYPDVAESDLSRMRAA 87

Query: 78  LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137
            VS +  +  AR + L  F+ +             SI +D  E+LI A YL  G+E A  
Sbjct: 88  TVSQQPLAAAARRIGLGDFVFLGKGESTHGGRDKDSILSDTFEALIGATYLTSGLEEARR 147

Query: 138 FVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
            +          +      +D KT L E++ +K      Y+V    GPDH   FT    +
Sbjct: 148 VILARLGFLLADAPSRGQHQDWKTLLVEYSQSKGLGEVSYEVEGE-GPDHQRVFTARAYV 206

Query: 196 SG--LAPAQGMDCSKRAAEQVAAAEVLKRE 223
           S    A  +G   SK+ AE  AA + +KR 
Sbjct: 207 SESSEALGEGRASSKKHAENAAAQDAMKRL 236


>gi|308177247|ref|YP_003916653.1| ribonuclease III [Arthrobacter arilaitensis Re117]
 gi|307744710|emb|CBT75682.1| ribonuclease III [Arthrobacter arilaitensis Re117]
          Length = 225

 Score =  218 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 63/212 (29%), Positives = 102/212 (48%), Gaps = 6/212 (2%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           KR+G    +      A TH S S+ +    + ERLEFLGD ILG  ++  L+  F    E
Sbjct: 2   KRLGINI-DSETFRLAFTHRSYSYEHGGIPTNERLEFLGDSILGFCVAEYLYASFPDLPE 60

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+L+ R  ++VS    + +AR+L++   + +     +   +  +SI AD +E+++ A YL
Sbjct: 61  GDLAKRRAAIVSTRALAMIARDLEVGEHLFLGRGESQSNGANKSSILADTMEAILGATYL 120

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
             G++ A   V ++               D KT +QE   ++      Y+VT  SGPDH 
Sbjct: 121 VQGMDEARALVLRFVTPLLEDPRLLGATTDWKTVIQEEVASQKLGEMCYEVTG-SGPDHA 179

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
             +   + I   +  +G   SK+ AEQ AA  
Sbjct: 180 RTYVAKLCIGAKSYGEGHGPSKKEAEQEAAHN 211


>gi|312127786|ref|YP_003992660.1| ribonuclease iii [Caldicellulosiruptor hydrothermalis 108]
 gi|311777805|gb|ADQ07291.1| ribonuclease III [Caldicellulosiruptor hydrothermalis 108]
          Length = 222

 Score =  218 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 71/223 (31%), Positives = 114/223 (51%), Gaps = 11/223 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             +EK +GY F +++LL  ALTH S +HS +  YERLEFLGD  L L++S  LF +F   
Sbjct: 2   EEIEKALGYKFKDKNLLRLALTHKSATHSNKNCYERLEFLGDAALELVVSKYLFVNFPDL 61

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGEL+    ++V ++T S+VA +L+L + I      + +      SI ADV+E++  A+
Sbjct: 62  SEGELTNIRAAVVCSQTLSEVAEKLNLKNHIIFGKREKMEKFHENKSILADVLEAIFGAI 121

Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEY---KVTFRS 181
           +++ G +     +    K    K  +GK   D KT+LQE    +      Y   ++  + 
Sbjct: 122 FIESGFDKLEKIIVNLLKPYIQKAVAGKLFYDYKTKLQEIVQREGKKKIVYKDCEIIEK- 180

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
                  F   + + G   ++G   SK+ A+Q AA + L   G
Sbjct: 181 -----KYFKSELFVEGKKVSEGYGTSKKEAQQDAAYKFLLEMG 218


>gi|225873636|ref|YP_002755095.1| ribonuclease III [Acidobacterium capsulatum ATCC 51196]
 gi|225793249|gb|ACO33339.1| ribonuclease III [Acidobacterium capsulatum ATCC 51196]
          Length = 302

 Score =  218 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 80/264 (30%), Positives = 128/264 (48%), Gaps = 47/264 (17%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ-------------------------ESYE 41
           + LE  +GY F ++ LL +ALTHSS+++                            E  E
Sbjct: 18  AELEAALGYTFQDKGLLARALTHSSLAYEQTAQTATPAAARATGKSSEARTRRSPLEDNE 77

Query: 42  RLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS 101
           +LEFLGD +LGL+++  L+       EG+L+   ++LVS +   QVA  L L +++R+  
Sbjct: 78  QLEFLGDAVLGLIVAEALYRAHPEMSEGQLTRLRSALVSRKHMGQVAHRLHLGTYLRMGR 137

Query: 102 DLRKDVCSFMTSIQADVVESLIAALYLDG---------GIEVAGTFVDKYWKQRALKS-- 150
              +       ++ A+  E+LIAA+YLD           +  A   ++++  + +L S  
Sbjct: 138 GEERSGGRKKPALLANAAEALIAAVYLDAAGITGPCETALTAARAIIERHVIEPSLPSLL 197

Query: 151 -----GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL------A 199
                G    D K+ LQE+  ++    PEY VT +SGPDH  RF V V + G       A
Sbjct: 198 QEASRGTSIGDHKSALQEFLQSEHRGQPEYVVTGQSGPDHHKRFLVEVRLPGKAGAPGTA 257

Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223
            A+G+  +K+ AEQ AA   L++ 
Sbjct: 258 LARGIGGTKKHAEQEAARRALRKL 281


>gi|118587506|ref|ZP_01544930.1| ribonuclease III [Oenococcus oeni ATCC BAA-1163]
 gi|118431957|gb|EAV38699.1| ribonuclease III [Oenococcus oeni ATCC BAA-1163]
          Length = 243

 Score =  217 bits (554), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 110/228 (48%), Gaps = 9/228 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M+ ++   +++  G  FAN+ LL +A T  +  + + E     Y+RLEFLGD ++ L+++
Sbjct: 13  MNNIQ-KGIKEDFGIEFANQDLLLEAFTQGNYLNEHPEEKGRDYQRLEFLGDSVMQLIVA 71

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  +   +EG+L+    ++V +++ S  AR      +IR+             S+  
Sbjct: 72  DYLFTRYPDWEEGQLTEMRIAMVQSKSFSHFARLAGFNRYIRLGKGEELSGARNRDSLLE 131

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D+ E+ I ALY D G +   TF++K +   A+  G F    D K++LQE       V  E
Sbjct: 132 DIWEAFIGALYKDQGAKAVFTFLNKAFFP-AIDEGFFEEFIDYKSKLQELLQKAGSVDIE 190

Query: 175 YKVTFRSGPDHDP-RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           YKV      D     F V V ++  A   G   S + AE+ AA +  +
Sbjct: 191 YKVENEDLSDPQKPHFEVTVFVNDKAIGSGSGRSIKIAEKRAAKKAYQ 238


>gi|296171390|ref|ZP_06852723.1| ribonuclease III [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295894165|gb|EFG73924.1| ribonuclease III [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 237

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 67/208 (32%), Positives = 101/208 (48%), Gaps = 9/208 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
             L + +G    +  LL  ALTH S ++ +    + ERLEFLGD +LGL I+  L++   
Sbjct: 5   EDLLEALGVELPD-ELLSLALTHRSYAYEHGGLPTNERLEFLGDAVLGLTITDELYHRHP 63

Query: 65  SAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVES 121
              EG+L+    S+V+ +  + VAR+L    L   + +         +  +SI AD +ES
Sbjct: 64  DRSEGDLAKLRASVVNTQALADVARKLSADGLGVHLFLGRGEANTGGADKSSILADGMES 123

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTF 179
           L+ A+YL  GI+ A   + + +      +       D KT LQE   A+    P Y VT 
Sbjct: 124 LLGAIYLQHGIDTAREVILRLFGGLLDAAPTLGAGLDWKTSLQELTAARGMGAPSYVVTS 183

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            +GPDHD  FT VV +       G+  S
Sbjct: 184 -TGPDHDKEFTAVVVVMDTEYGSGVGRS 210


>gi|167563529|ref|ZP_02356445.1| ribonuclease III [Burkholderia oklahomensis EO147]
          Length = 293

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 64/199 (32%), Positives = 97/199 (48%), Gaps = 6/199 (3%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           E R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F    EG
Sbjct: 2   ESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRFSKLDEG 58

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           +LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I A++LD
Sbjct: 59  DLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVFLD 118

Query: 130 GGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           GG E A   + + +      +      +DAKT LQE+        P Y V    G  H+ 
Sbjct: 119 GGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQ 178

Query: 188 RFTVVVEISGL-APAQGMD 205
           +F V   +  L     G  
Sbjct: 179 QFEVECTVPKLDVKVSGSG 197


>gi|226199978|ref|ZP_03795528.1| ribonuclease III [Burkholderia pseudomallei Pakistan 9]
 gi|225928034|gb|EEH24071.1| ribonuclease III [Burkholderia pseudomallei Pakistan 9]
          Length = 462

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 64/199 (32%), Positives = 97/199 (48%), Gaps = 6/199 (3%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           E R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F    EG
Sbjct: 2   ESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRFGKLDEG 58

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           +LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I A++LD
Sbjct: 59  DLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVFLD 118

Query: 130 GGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           GG E A   + + +      +      +DAKT LQE+        P Y V    G  H+ 
Sbjct: 119 GGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQ 178

Query: 188 RFTVVVEISGLAP-AQGMD 205
           +F V   +  L     G  
Sbjct: 179 QFEVECTVPKLDIKVSGSG 197


>gi|254374854|ref|ZP_04990335.1| ribonuclease III [Francisella novicida GA99-3548]
 gi|151572573|gb|EDN38227.1| ribonuclease III [Francisella novicida GA99-3548]
          Length = 230

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 69/221 (31%), Positives = 110/221 (49%), Gaps = 9/221 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            YS     +GY F + +LL +ALTH S     +++YERLEFLGD +L  +I+ +L+  F 
Sbjct: 4   EYSRFYNILGYNFKDYTLLIRALTHRS---KTKKNYERLEFLGDSVLSFVIAEVLYKQFT 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+LS   + LV   T +Q+A  L +  +I + +            I  DV E++I 
Sbjct: 61  DLAEGKLSQLRSKLVKGTTLAQLASSLKMDEYIILGASE--QGGHKREKILEDVFEAVIG 118

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRS 181
           A+YLD         + K+++   L         +D+K++LQE         PEY +    
Sbjct: 119 AIYLDSDFATVKKVILKWYQPIILSINLDTIKVKDSKSKLQEILLQNALSLPEYSIEAID 178

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221
           G DH+ +FTVV     L    +    S++ AEQ AA ++++
Sbjct: 179 GKDHEQQFTVVAMSKDLNLRVKAQGTSRKKAEQKAAEKMIE 219


>gi|167720558|ref|ZP_02403794.1| ribonuclease III [Burkholderia pseudomallei DM98]
          Length = 438

 Score =  217 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 64/199 (32%), Positives = 97/199 (48%), Gaps = 6/199 (3%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           E R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F    EG
Sbjct: 2   ESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRFGKLDEG 58

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           +LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I A++LD
Sbjct: 59  DLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVFLD 118

Query: 130 GGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           GG E A   + + +      +      +DAKT LQE+        P Y V    G  H+ 
Sbjct: 119 GGFEAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQ 178

Query: 188 RFTVVVEISGLAP-AQGMD 205
           +F V   +  L     G  
Sbjct: 179 QFEVECTVPKLDIKVSGSG 197


>gi|34497521|ref|NP_901736.1| ribonuclease III [Chromobacterium violaceum ATCC 12472]
 gi|81655793|sp|Q7NWC4|RNC_CHRVO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|34103376|gb|AAQ59738.1| ribonuclease III [Chromobacterium violaceum ATCC 12472]
          Length = 236

 Score =  217 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 104/206 (50%), Gaps = 6/206 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           R+  L + + YAF    LL +ALTH S S     + ER EF+GD IL   ++ +L++ F 
Sbjct: 7   RFRRLSQALDYAFQKPELLRQALTHRSYS---SANNERFEFVGDSILNYTVARMLYDQFP 63

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGELS    +LV+  T +++A EL L  ++ +     K       SI AD +E+  A
Sbjct: 64  QLTEGELSRLRANLVNQNTLAEIAHELKLGDYLYLGEGELKSGGFNRPSILADALEATFA 123

Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+  D     A   V + + QR   + + +  +DAKT LQE   A+    P+Y++  +SG
Sbjct: 124 AVSFDADFAAAEQVVRRLYNQRVATIDTTRQAKDAKTRLQEALQARKLALPKYRILSQSG 183

Query: 183 PDHDPRFTVVVEISGLAP-AQGMDCS 207
             H+  F V  ++  +A  + G   S
Sbjct: 184 EAHEQWFKVECDLGEMALISTGDGGS 209


>gi|309810296|ref|ZP_07704134.1| ribonuclease III [Dermacoccus sp. Ellin185]
 gi|308435724|gb|EFP59518.1| ribonuclease III [Dermacoccus sp. Ellin185]
          Length = 272

 Score =  217 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 67/205 (32%), Positives = 98/205 (47%), Gaps = 5/205 (2%)

Query: 19  NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           + SLL +ALTH S ++        ER EFLGD +LGL+++  L+     A EG L+ +  
Sbjct: 34  DESLLRRALTHRSFAYENGGIPHNERQEFLGDAVLGLVVTETLYTDQPDAPEGHLAKQRA 93

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           ++V++   ++VAR L+L  ++ +             SI AD  E++I  ++L GGIE   
Sbjct: 94  AVVNSRALAEVARGLELGEYLLLGRGELATGGRDKDSILADTTEAVIGTVFLSGGIEAGR 153

Query: 137 TFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
             V         +S       D KT LQE   A     P Y V    GPDHD  FT  V 
Sbjct: 154 RIVHHLIDPLMNRSSTMGAALDWKTSLQEATAAAGLGAPTYVVEGE-GPDHDKVFTATVL 212

Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEV 219
           + G     G   +K++AE +AA   
Sbjct: 213 VDGRTLGAGTGRNKKSAEMIAAENA 237


>gi|62184964|ref|YP_219749.1| ribonuclease III [Chlamydophila abortus S26/3]
 gi|81312866|sp|Q5L6E3|RNC_CHLAB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|62148031|emb|CAH63783.1| ribonuclease III [Chlamydophila abortus S26/3]
          Length = 237

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 62/224 (27%), Positives = 101/224 (45%), Gaps = 4/224 (1%)

Query: 1   MSA-LRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLIS 56
           M+  +    +E ++ + F    LL  ALTH S  +      E  ERLEFLGD +L L+++
Sbjct: 1   MNNLINIKEVEAKLNFTFTQPKLLVTALTHPSYRNETATITEDSERLEFLGDAVLCLIVT 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  F S  EG LS    +L++A +C Q    L L  ++ +    R       TS  A
Sbjct: 61  EHLFLLFPSMDEGTLSTARAALINAVSCCQYTDALGLGEYLLIGKGERIQNERGKTSAYA 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           ++ E+++ A+YLDGG+  A          +         + K  LQ+         P Y+
Sbjct: 121 NLFEAILGAVYLDGGLAPARQITVPLLPSKKDILPLMLGNPKNRLQQLTQKHLRTLPVYQ 180

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
               + P     + + V ++     +G   SK+ AE++AA + L
Sbjct: 181 YEPWTSPQGASGYHIRVLVNHEVWGEGFALSKKEAEKLAAQQAL 224


>gi|167470281|ref|ZP_02334985.1| ribonuclease III [Yersinia pestis FV-1]
          Length = 195

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 65/196 (33%), Positives = 98/196 (50%), Gaps = 5/196 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F  + LL +ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFQQQELLLQALTHRSASSKH---NERLEFLGDSILSFVIANELY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG++S    +LV   T +++ARE DL   +R+     K       SI AD VE
Sbjct: 58  RRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI  ++LD  I      + +++  R   +  G  ++D KT LQE+   +    P Y V 
Sbjct: 118 ALIGGVFLDSDIHTIERLILEWYHSRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVV 177

Query: 179 FRSGPDHDPRFTVVVE 194
              G  HD  F     
Sbjct: 178 QVRGEAHDQEFISTAR 193


>gi|295111283|emb|CBL28033.1| ribonuclease III, bacterial [Synergistetes bacterium SGP1]
          Length = 251

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 70/219 (31%), Positives = 118/219 (53%), Gaps = 5/219 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH 62
             + L+  +GY+F +  LLE+AL H+S ++ +    S ERLEFLGD +LG +++  L+  
Sbjct: 27  DLAALQAALGYSFRDEGLLEEALCHASFANEHGLAVSNERLEFLGDSVLGFVVARALYRL 86

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +  A+EG+L+ +   LV   +    AREL+L   I     +R +  +  TS+  D VE+L
Sbjct: 87  YPEAREGDLTQKRAELVCGRSLRDRARELNLPPLILHGHSVRDE--ALPTSMCEDAVEAL 144

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           + A+ LDGG++ A   + + + Q A    +     K+ LQ W  A+    P Y++   +G
Sbjct: 145 LGAVCLDGGVQAAEGVIGRLFLQEAEVRAETDVSPKSRLQTWLQARRIPLPTYELVSVTG 204

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           P H P F V + ++G+        +++ AE  AA  VL+
Sbjct: 205 PSHAPSFRVRLRVNGVEH-TACGSTRKGAESDAAERVLE 242


>gi|294668882|ref|ZP_06733972.1| ribonuclease III [Neisseria elongata subsp. glycolytica ATCC 29315]
 gi|291309179|gb|EFE50422.1| ribonuclease III [Neisseria elongata subsp. glycolytica ATCC 29315]
          Length = 233

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 65/217 (29%), Positives = 106/217 (48%), Gaps = 6/217 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            +++++ Y F    LL +ALTH S S  +    ER EF+GD IL   I+ +L++ F    
Sbjct: 3   HIQQKLQYRFKQPELLTRALTHRSYSSRH---NERFEFVGDAILNYTIAKMLYDTFLDLP 59

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG LS    +LV+ +T +++A EL +   + + +   K       SI +D +E++ AA+ 
Sbjct: 60  EGRLSRLRANLVNQDTLAEIATELKVGDALLLGNGELKSGGFRRPSILSDAMEAMFAAVS 119

Query: 128 LDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
            D     A   V   + +R   +      +DAKT LQE   A+    P+Y++  + G  +
Sbjct: 120 FDTDFNAAEQVVRHLFARRVGSISFDNEGKDAKTMLQEALQARRLALPKYRIEHQEGEGY 179

Query: 186 DPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221
             RFTV  ++  L         S+RAAEQ  A    +
Sbjct: 180 TARFTVSCDLGELGFITTAEAHSRRAAEQQTAKTAFE 216


>gi|322420696|ref|YP_004199919.1| ribonuclease III [Geobacter sp. M18]
 gi|320127083|gb|ADW14643.1| ribonuclease III [Geobacter sp. M18]
          Length = 224

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 79/210 (37%), Positives = 120/210 (57%), Gaps = 2/210 (0%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLFNHFDS 65
             LE ++GY F+NR LLE+ALTH + ++    +  +RLEF GD +L  L+S LL   F  
Sbjct: 2   EKLEGKLGYRFSNRELLEEALTHRTYANEAGGKDNQRLEFFGDAVLDFLLSDLLLQRFPD 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           ++EGEL+    +LV   + +++A  L+L + +R+     K       S+ AD  E+L+AA
Sbjct: 62  SREGELTKMRAALVDEVSLARIAAGLELGAALRLGRGEEKGGGRQKRSLLADAFEALLAA 121

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           LYLDGG++ A   V + ++    +      RDAKTELQE A    G  P Y++   +GPD
Sbjct: 122 LYLDGGVDTARRVVHELFEPLLCRPEILCGRDAKTELQERARLLRGKLPRYQLKQVTGPD 181

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           HD RFTV + +      +G+  +K+ AEQ 
Sbjct: 182 HDRRFTVEIFLGSELMGEGVGRTKKEAEQD 211


>gi|110598670|ref|ZP_01386935.1| Ribonuclease III [Chlorobium ferrooxidans DSM 13031]
 gi|110339723|gb|EAT58233.1| Ribonuclease III [Chlorobium ferrooxidans DSM 13031]
          Length = 270

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 76/227 (33%), Positives = 114/227 (50%), Gaps = 7/227 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISH-----SYQESYERLEFLGDRILGLLI 55
           +SA   + L + +G   +N  L + ALTH S+ H        ES +RLEFLGD +LGLLI
Sbjct: 31  LSAETIAYLRRLVGEPASNLLLYQTALTHRSVVHDPATQHLVESNQRLEFLGDSVLGLLI 90

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S  LF  F  + EGELS   + +V+ ++ +  A  ++LA ++       ++  +   S  
Sbjct: 91  SDYLFRTFPGSAEGELSSNRSKIVNRKSLAGFAASMNLADYLLTGESADRNKITSSDSAL 150

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTP 173
           AD  ESL  A+YLD GI  A  F+ K+  +        +   + K+ L E+  ++    P
Sbjct: 151 ADAFESLTGAIYLDKGILAAENFIRKHVLEHENFRMIVEAEHNYKSRLIEYTQSRHLPMP 210

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            Y V    G +H+ +FTV V  S      G    K+ AEQ+AA E L
Sbjct: 211 VYSVLEECGAEHEKQFTVGVSCSDRHLGSGTARRKKDAEQLAAKEAL 257


>gi|108798917|ref|YP_639114.1| ribonuclease III [Mycobacterium sp. MCS]
 gi|119868032|ref|YP_937984.1| ribonuclease III [Mycobacterium sp. KMS]
 gi|126434517|ref|YP_001070208.1| ribonuclease III [Mycobacterium sp. JLS]
 gi|108769336|gb|ABG08058.1| RNAse III [Mycobacterium sp. MCS]
 gi|119694121|gb|ABL91194.1| RNAse III [Mycobacterium sp. KMS]
 gi|126234317|gb|ABN97717.1| RNAse III [Mycobacterium sp. JLS]
          Length = 234

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 67/212 (31%), Positives = 103/212 (48%), Gaps = 9/212 (4%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLF 60
            L  S L   +G    +  LL  ALTH S S+ +    + ERLEFLGD +LGL I+  LF
Sbjct: 2   TLDRSPLLAALGVTLPD-DLLTIALTHRSYSYEHGGLPTNERLEFLGDSVLGLTITEELF 60

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQAD 117
           +      EG+L+    S+V+    + V R+L    L S++ +         +  +SI AD
Sbjct: 61  HRHPDRSEGDLAKLRASIVNTGALADVGRKLSDDGLGSYLLLGKGEESSGGADKSSILAD 120

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEY 175
            VESL+ A+Y+  G+ V    + + +      +       D K+ LQE   A+    P Y
Sbjct: 121 GVESLLGAIYVQHGLTVTREVILRLFAGLLDTAPTLGAGLDWKSSLQELTAARGLGAPHY 180

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            VT  +GPDHD  FT  V ++ +   +G+  +
Sbjct: 181 VVTS-TGPDHDKEFTATVLVTDIEYGRGVGRT 211


>gi|158312991|ref|YP_001505499.1| ribonuclease III [Frankia sp. EAN1pec]
 gi|158108396|gb|ABW10593.1| Ribonuclease III [Frankia sp. EAN1pec]
          Length = 306

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 65/203 (32%), Positives = 102/203 (50%), Gaps = 8/203 (3%)

Query: 19  NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           +  LL++ALTH S ++      + ERLEFLGD +LGL+++  LF       EG+L+ +  
Sbjct: 23  DPELLDRALTHRSYAYENGGLPTNERLEFLGDAVLGLIVTAALFRRHPDLPEGQLAKQRA 82

Query: 77  SLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           S+V+    + VAR +    +  ++ +             SI AD +E++I A+YL   ++
Sbjct: 83  SVVNMRALADVARRIGTAGIGPYLLLGRGEEATGGRDKPSILADTLEAVIGAVYLSNSLD 142

Query: 134 VAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
           VA  FV + +     ++       D KT LQE         P+Y VT  +GPDH  RFT 
Sbjct: 143 VASGFVHRLFDPLLDEAAGRGAGLDWKTSLQEQTALLGLGPPDYAVT-EAGPDHAKRFTA 201

Query: 192 VVEISGLAPAQGMDCSKRAAEQV 214
              ++G    +G   SK+ AEQ 
Sbjct: 202 FARVAGEVLGEGEGGSKKEAEQR 224


>gi|54026155|ref|YP_120397.1| ribonuclease III [Nocardia farcinica IFM 10152]
 gi|81373706|sp|Q5YS08|RNC_NOCFA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|54017663|dbj|BAD59033.1| putative RNase III [Nocardia farcinica IFM 10152]
          Length = 240

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 109/226 (48%), Gaps = 9/226 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH 62
            +++L + +G       LL  ALTH S ++      + ERLEFLGD +LGL I+  L++ 
Sbjct: 13  DHASLLEALGVDVR-PDLLRLALTHRSYAYENGGLPTNERLEFLGDSVLGLSITERLYHE 71

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVAR---ELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
                EGEL+    S+V+    ++VAR   E  L + + +             SI AD +
Sbjct: 72  HPDKSEGELAKLRASVVNMHALAEVARGLGEGGLGAHLLLGKGEELTGGRDKPSILADGM 131

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177
           ESL+ A++L  GI+VA   V + +     +  +     D KT LQE    +    P Y+ 
Sbjct: 132 ESLLGAVHLQHGIDVARGVVLRLFADLLERGPRMGAGLDWKTSLQELTAERGLGVPSYE- 190

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              +GPDHD  FT    I G A  QG+  SK+ AEQ AA    +  
Sbjct: 191 ISSTGPDHDKEFTATTVIGGRAYGQGVGRSKKEAEQKAAGAAYQAL 236


>gi|327382635|gb|AEA54111.1| ribonuclease III [Lactobacillus casei LC2W]
 gi|327385829|gb|AEA57303.1| ribonuclease III [Lactobacillus casei BD-II]
          Length = 231

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 63/210 (30%), Positives = 98/210 (46%), Gaps = 7/210 (3%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIST 57
           ++   S L +R G  F + SLL++A THSS  + ++E      ERLEFLGD +L L +S 
Sbjct: 3   ASEFVSELRQRYGIEFHDLSLLDEAFTHSSYVNEHKELGLKDNERLEFLGDAVLELTVSD 62

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            L+  F    EG+L+    + V     S  ++E     +I++     K       ++  D
Sbjct: 63  YLYRKFPDKPEGDLTRIRAAAVQTAAFSAFSKEAHFDRYIKLGKGEEKAGARKRLTLLED 122

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEY 175
           + E+   ALYLD G +    F  +    + + +G+F   +D KT LQE       V   Y
Sbjct: 123 LFEAFNGALYLDQGRDANIRFAQQIIFPK-IDAGEFSDDQDHKTALQEVLQQNGDVAIVY 181

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205
            +    GP H+ +F V VE+ G     G  
Sbjct: 182 HLLDEQGPAHERQFHVDVEVDGRVLGTGFG 211


>gi|296115041|ref|ZP_06833683.1| ribonuclease III [Gluconacetobacter hansenii ATCC 23769]
 gi|295978378|gb|EFG85114.1| ribonuclease III [Gluconacetobacter hansenii ATCC 23769]
          Length = 255

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 80/223 (35%), Positives = 113/223 (50%), Gaps = 17/223 (7%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----------------SYERLEF 45
               +  +E  +GY F N +LL +ALTH S +H                    S ERLEF
Sbjct: 18  PTAEFERIEAYVGYCFRNAALLHEALTHRSAAHQRSSAIGRRTRQSVARRGAGSNERLEF 77

Query: 46  LGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK 105
           +GDR+LGLL++  L   F   +EG L  R   LVS    + +A ++ L S + V+    +
Sbjct: 78  IGDRVLGLLMAEWLLERFPDEQEGALGPRHAHLVSRAVLAHIAEDMALPSALDVAEHEAR 137

Query: 106 DVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWA 165
                M ++ AD VE+++ A+YLDGG+E A  FV + W    +   +  +D KT LQEW 
Sbjct: 138 AGVRQMANVLADAVEAILGAIYLDGGLEPARAFVRRAWNNAIVAQARPPKDPKTALQEWV 197

Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
            A+    P YKV    GP H PRF + VE SG    +G+  SK
Sbjct: 198 LARGLPLPVYKVVSTDGPSHAPRFVISVEASGRR-GEGVAGSK 239


>gi|257066163|ref|YP_003152419.1| ribonuclease III [Anaerococcus prevotii DSM 20548]
 gi|256798043|gb|ACV28698.1| ribonuclease III [Anaerococcus prevotii DSM 20548]
          Length = 239

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 62/209 (29%), Positives = 112/209 (53%), Gaps = 6/209 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLFN 61
           +    E +IGY F ++ L++ A THSS ++     ++S ERLEFLGD IL +++S +LF 
Sbjct: 10  KIEEFENKIGYTFNDKDLIDVAFTHSSYTNEVKGKKKSNERLEFLGDSILDMIVSEVLFK 69

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           H+    EG L+   + LV   + ++   + ++ +F+   +  R+        ++AD  E+
Sbjct: 70  HYSMKPEGWLTKTRSRLVCTSSFAKACEKFEMTTFLNFGNGERQGGGELKKHVKADTFEA 129

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALK---SGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           + AA+YLD   +    F+ + +K+ AL+         D KT+LQE+ +AK     +Y + 
Sbjct: 130 VCAAIYLDSSYDNLFKFLKENYKEEALEIINDDSIFNDYKTKLQEYHNAKDRKILKYVLV 189

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              GP+H+  FT+ V++     A G+  +
Sbjct: 190 KEEGPEHEKTFTMAVKLGNKVLAHGVGKN 218


>gi|160903376|ref|YP_001568957.1| ribonuclease III [Petrotoga mobilis SJ95]
 gi|160361020|gb|ABX32634.1| Ribonuclease III [Petrotoga mobilis SJ95]
          Length = 253

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 73/210 (34%), Positives = 105/210 (50%), Gaps = 9/210 (4%)

Query: 21  SLLEKALTHSSISHSYQ------ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
           S+L +AL H S     +      +S ERLEFLGD +L L+IS  L+N++    EGE+S  
Sbjct: 33  SVLFEALCHKSYVFDNENIQRKLDSNERLEFLGDAVLELVISEFLYNNY-HLSEGEMSKA 91

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
              + S    ++VA +L L  FI +S    K       SI +D +E+L A +YL  G E 
Sbjct: 92  RAIIGSEIILAEVALKLRLDDFIFLSKGEDKQGGRTKKSILSDTMEALFACIYLSCGYEK 151

Query: 135 AGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
           A  ++ K  K+    +  G    D KT+LQE    K    PEY +   SGP H  R+ V 
Sbjct: 152 AKKYIIKNMKEYIENAVEGNIFLDYKTKLQELTQEKTKKLPEYVLLSASGPSHMKRYKVA 211

Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           V++       G   SK+ AEQ+AA    ++
Sbjct: 212 VKLDDEILGIGEGFSKKFAEQLAAKIACEK 241


>gi|239631967|ref|ZP_04674998.1| ribonuclease 3 [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|301066653|ref|YP_003788676.1| dsRNA-specific ribonuclease [Lactobacillus casei str. Zhang]
 gi|239526432|gb|EEQ65433.1| ribonuclease 3 [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|300439060|gb|ADK18826.1| dsRNA-specific ribonuclease [Lactobacillus casei str. Zhang]
          Length = 231

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 63/210 (30%), Positives = 99/210 (47%), Gaps = 7/210 (3%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIST 57
           ++   S L +R G  F + SLL++A THSS  + ++E      ERLEFLGD +L L +S 
Sbjct: 3   ASEFVSELRQRYGIEFHDLSLLDEAFTHSSYVNEHKELGLKDNERLEFLGDAVLELTVSD 62

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            L+  F    EG+L+    + V     S  ++E     +I++     K       ++  D
Sbjct: 63  YLYRKFPDKPEGDLTRIRAAAVQTAAFSAFSKEAHFDRYIKLGKGEEKAGARKRLTLLED 122

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEY 175
           + E+   ALYLD G +    F ++    + + +G+F   +D KT LQE       V   Y
Sbjct: 123 LFEAFNGALYLDQGRDANIRFAEQIIFPK-IDAGEFSADQDHKTALQEVLQQNGDVAIVY 181

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205
            +    GP H+ +F V VE+ G     G  
Sbjct: 182 HLLDEQGPAHERQFHVDVEVDGRVLGTGFG 211


>gi|124265843|ref|YP_001019847.1| ribonuclease III [Methylibium petroleiphilum PM1]
 gi|124258618|gb|ABM93612.1| Ribonuclease III [Methylibium petroleiphilum PM1]
          Length = 248

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 77/205 (37%), Positives = 110/205 (53%), Gaps = 6/205 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           + +L+ R+G+ FA   LL +ALTH S      ++ ERLEFLGD +L   IS LLF HF  
Sbjct: 23  FDSLQVRLGHRFAQVGLLGRALTHKSFG---ADNNERLEFLGDAVLSAAISGLLFEHFGQ 79

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           + EG+L+     LV  E   ++A +L L + +R+S    +   +   SI AD VE+LIAA
Sbjct: 80  SGEGDLTRVRAHLVREEMLHRLALDLGLPALLRLSEGEARSGGARRPSILADAVEALIAA 139

Query: 126 LYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YLDGG   A   V++ +        +  + RD KTELQEW  A+    P Y++    G 
Sbjct: 140 VYLDGGFASAQALVERLFTPLVASTAAEAWTRDPKTELQEWLQARRQPVPGYRIESTRGR 199

Query: 184 DHDPRFTVVVEISGLAP-AQGMDCS 207
            H+  FTVV  I   +   +G   S
Sbjct: 200 QHEQMFTVVCSIPSRSLEVRGEGRS 224


>gi|325529480|gb|EGD06389.1| ribonuclease III [Burkholderia sp. TJI49]
          Length = 279

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 64/199 (32%), Positives = 97/199 (48%), Gaps = 6/199 (3%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           E R+ Y F N  LL +ALTH S S ++    ERLEFLGD +L   ++ LLF  F    EG
Sbjct: 2   ESRLRYEFRNAELLRQALTHRSHSATH---NERLEFLGDSVLNCAVAALLFQRFSKLDEG 58

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           +LS    +LV  ++  ++A+ L+++  +R+     +       SI AD  E++I A++LD
Sbjct: 59  DLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADAFEAIIGAVFLD 118

Query: 130 GGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           GG E A   + + +      +      +DAKT LQE+        P Y V    G  H+ 
Sbjct: 119 GGFEAAQGVIKRLYIPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQ 178

Query: 188 RFTVVVEISGL-APAQGMD 205
           +F V   +  L     G  
Sbjct: 179 QFEVECTVPKLDVKVSGSG 197


>gi|312793340|ref|YP_004026263.1| ribonuclease iii [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180480|gb|ADQ40650.1| ribonuclease III [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 222

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 71/223 (31%), Positives = 113/223 (50%), Gaps = 11/223 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             +E+ +GY F +++LL  ALTH S +HS +  YER EFLGD  L L +S  LF HF   
Sbjct: 2   EEIERALGYTFKDKNLLRLALTHKSATHSNKNCYERFEFLGDAALELAVSKYLFVHFPEL 61

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGEL+    ++V ++T S+VA +L+L + I      + +      SI ADV+E++  A+
Sbjct: 62  SEGELTNIRAAVVCSQTLSKVAEKLNLKNHIIFGKREKMEKFHENKSILADVLEAIFGAI 121

Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEY---KVTFRS 181
           +++ G ++    +    K    K  +GK   D KT+LQE    +      Y   ++  + 
Sbjct: 122 FIESGFDIVEKIIVNLLKPYIQKAVAGKLFYDYKTKLQEIVQREGNKKIVYKDCEIIEK- 180

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
                  F   + I G   ++G   SK+ A+Q AA + L   G
Sbjct: 181 -----KYFKSELFIEGKKVSEGYGTSKKEAQQDAAYKFLLEMG 218


>gi|325963729|ref|YP_004241635.1| RNAse III [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469816|gb|ADX73501.1| RNAse III [Arthrobacter phenanthrenivorans Sphe3]
          Length = 242

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 66/207 (31%), Positives = 98/207 (47%), Gaps = 6/207 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
             L KR+G  F +   L  ALTH S ++      + ERLEFLGD ILG  ++  L+    
Sbjct: 5   EELLKRLGV-FIDAGTLRLALTHRSYAYENGGIPTNERLEFLGDSILGFSVTDALYRDNP 63

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+L+ R +++VS    + + R L +  +I +    +        SI AD +E+LI 
Sbjct: 64  DLPEGDLAKRRSAVVSTRALAGIGRSLGIGEYIYLGQGEKLTQGKNKASILADTMEALIG 123

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A Y+   IE A   V +        +       D KT +QE A ++   T  Y V   +G
Sbjct: 124 ATYVSNDIETARQLVMRLIGPLLKDAAALGAGTDWKTSIQELAASRQLGTIHYAVDG-TG 182

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209
           PDH   FT V+ + G A  +G   SK+
Sbjct: 183 PDHARTFTAVLHVGGTAYGKGSGHSKK 209


>gi|162147937|ref|YP_001602398.1| ribonuclease III [Gluconacetobacter diazotrophicus PAl 5]
 gi|209542555|ref|YP_002274784.1| Ribonuclease III [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786514|emb|CAP56096.1| putative ribonuclease III [Gluconacetobacter diazotrophicus PAl 5]
 gi|209530232|gb|ACI50169.1| Ribonuclease III [Gluconacetobacter diazotrophicus PAl 5]
          Length = 249

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 75/220 (34%), Positives = 113/220 (51%), Gaps = 17/220 (7%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----------------SYERLEFLGDR 49
            +++E R+GY F    LL +ALTH S +H                    S ERLEF+GDR
Sbjct: 13  VASVEARVGYRFRRPDLLREALTHRSAAHQRNGGGARRSRQPAARRGAGSNERLEFIGDR 72

Query: 50  ILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS 109
           +LGL+++  L   F   +EG L  R   LVS    + +A  ++L   + V+    +    
Sbjct: 73  VLGLVMAEWLLERFPDEQEGALGPRHAHLVSRPVLAAIAGTMNLQQALDVAEHEARAGVR 132

Query: 110 FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKF 169
            + ++ AD VE+++ A+YLDGG+E A  FV   W +  +   +  +D KT LQEW  A+ 
Sbjct: 133 QVANVLADAVEAILGAIYLDGGLEPARRFVRAAWNEAIVAQAQPPKDPKTALQEWVLARG 192

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
              P Y+     GP H PRF + V  +G + A+G+  SKR
Sbjct: 193 LPLPAYRTVQMDGPSHAPRFVIAVTAAGQS-AEGIAGSKR 231


>gi|330717913|ref|ZP_08312513.1| ribonuclease III [Leuconostoc fallax KCTC 3537]
          Length = 236

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 60/228 (26%), Positives = 100/228 (43%), Gaps = 7/228 (3%)

Query: 1   MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55
           MS   +   L +    +F N +LL +ALT  +  + + +     Y+RLEFLGD ++   +
Sbjct: 1   MSVDSFKQYLNQTFAISFDNETLLLEALTQRNYLNEHPDETGRDYQRLEFLGDAVMQETV 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           +  LF  +    EG+L+    ++V   + +  AR++ L   IR+      +      S+ 
Sbjct: 61  AEYLFRRYPKWHEGQLTEMRIAMVQTRSFAHFARQVRLNEAIRLGKGEEMNGARDRDSLL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDK-YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174
            D+ E+ I ALYLD G +    F+D   +            D K+ LQE   A   V  +
Sbjct: 121 EDIWEAFIGALYLDQGADTVKRFLDATLFAAVDTDFFDHFIDFKSRLQEKLQANGPVDID 180

Query: 175 YKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           Y     +   D+   F   V +     A+G   S + AE+ AA + L 
Sbjct: 181 YNTISETILADNSTCFEASVSLDDRELARGTGKSIKDAEKAAARKALN 228


>gi|118498035|ref|YP_899085.1| ribonuclease III [Francisella tularensis subsp. novicida U112]
 gi|194323260|ref|ZP_03057044.1| ribonuclease III [Francisella tularensis subsp. novicida FTE]
 gi|208779555|ref|ZP_03246900.1| ribonuclease III [Francisella novicida FTG]
 gi|254373391|ref|ZP_04988879.1| ribonuclease III [Francisella tularensis subsp. novicida GA99-3549]
 gi|189043316|sp|A0Q7W6|RNC_FRATN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|118423941|gb|ABK90331.1| ribonuclease III [Francisella novicida U112]
 gi|151571117|gb|EDN36771.1| ribonuclease III [Francisella novicida GA99-3549]
 gi|194322624|gb|EDX20104.1| ribonuclease III [Francisella tularensis subsp. novicida FTE]
 gi|208744516|gb|EDZ90815.1| ribonuclease III [Francisella novicida FTG]
 gi|332678757|gb|AEE87886.1| Ribonuclease III [Francisella cf. novicida Fx1]
          Length = 230

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 68/221 (30%), Positives = 111/221 (50%), Gaps = 9/221 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            YS     +GY F + +LL +ALTH S     +++YERLEFLGD +L  +I+ +L+  F 
Sbjct: 4   EYSRFYNILGYNFKDYTLLIRALTHRS---KTKKNYERLEFLGDSVLSFVIAEVLYKQFT 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+LS   + LV   T +Q+A  L +  +I + +            I  DV E++I 
Sbjct: 61  DLAEGKLSQLRSKLVKGTTLAQLASSLKMDEYIILGASE--QGGHKREKILEDVFEAVIG 118

Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRS 181
           A+YLD         + K+++     +     + +D+K++LQE         PEY +    
Sbjct: 119 AIYLDSDFATVKKVILKWYQPIISSINLDTIKVKDSKSKLQEILLQNALSLPEYSIETID 178

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221
           G DH+ +FTVV     L    +    S++ AEQ AA ++++
Sbjct: 179 GKDHEQQFTVVAMSKDLNLRVKAQGTSRKKAEQKAAEKMIE 219


>gi|116495089|ref|YP_806823.1| ribonuclease III [Lactobacillus casei ATCC 334]
 gi|191638593|ref|YP_001987759.1| ribonuclease III [Lactobacillus casei BL23]
 gi|227534896|ref|ZP_03964945.1| ribonuclease III [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|116105239|gb|ABJ70381.1| RNAse III [Lactobacillus casei ATCC 334]
 gi|190712895|emb|CAQ66901.1| Ribonuclease 3 (Ribonuclease III) (RNase III) [Lactobacillus casei
           BL23]
 gi|227187652|gb|EEI67719.1| ribonuclease III [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
          Length = 231

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 63/210 (30%), Positives = 98/210 (46%), Gaps = 7/210 (3%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIST 57
           ++   S L +R G  F + SLL++A THSS  + ++E      ERLEFLGD +L L +S 
Sbjct: 3   ASEFVSELRQRYGIEFHDLSLLDEAFTHSSYVNEHKELGLKDNERLEFLGDAVLELTVSD 62

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            L+  F    EG+L+    + V     S  ++E     +I++     K       ++  D
Sbjct: 63  YLYRKFPDKPEGDLTRIRAAAVQTAAFSAFSKEAHFDRYIKLGKGEEKAGARKRLTLLED 122

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEY 175
           + E+   ALYLD G +    F  +    + + +G+F   +D KT LQE       V   Y
Sbjct: 123 LFEAFNGALYLDQGRDANIRFAQQIIFPK-IDAGEFSADQDHKTALQEVLQQNGDVAIVY 181

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205
            +    GP H+ +F V VE+ G     G  
Sbjct: 182 HLLDEQGPAHERQFHVDVEVDGRVLGTGFG 211


>gi|45359089|ref|NP_988646.1| ribonuclease III family protein [Methanococcus maripaludis S2]
 gi|45047964|emb|CAF31082.1| Ribonuclease III family:Double-stranded RNA binding (DsRBD) domain
           [Methanococcus maripaludis S2]
          Length = 230

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 62/224 (27%), Positives = 104/224 (46%), Gaps = 7/224 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
            +  L  ++   F + ++ ++A  HSS  +  +    E  ERLE+LGD +L L+IS  LF
Sbjct: 4   NFEKLLSKLDIQFNDLNIFKRAFMHSSYVNEQKNTNLEDNERLEYLGDAVLDLIISEYLF 63

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
              ++  EGE+S      V        A++L   +++ +             +I +DV E
Sbjct: 64  KK-ENLSEGEMSKLRAKYVCESALFTYAKKLKFNNYVLLGKGEINSKGYNKPAIVSDVFE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + IAA+YLD G++    FV ++      +S K    D KT+LQE+       +  Y    
Sbjct: 123 AFIAAIYLDQGLDSVKKFVYEFIIPIIEESSKELFIDYKTKLQEF-PELINKSINYVNLE 181

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +G  HD +F + V+       +G+  SK+ AE  AA   L + 
Sbjct: 182 ETGEAHDKKFVIAVKSGRKILGKGIGKSKKEAEMKAAKNALLKL 225


>gi|162449970|ref|YP_001612337.1| ribonuclease III [Sorangium cellulosum 'So ce 56']
 gi|161160552|emb|CAN91857.1| ribonuclease III [Sorangium cellulosum 'So ce 56']
          Length = 275

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 73/198 (36%), Positives = 104/198 (52%), Gaps = 7/198 (3%)

Query: 19  NRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
           +   LE+ALTH S S+  +       +RLEFLGD +LGL ++ LL   F  A+EGELS+ 
Sbjct: 17  DLPHLEEALTHPSFSNEQRGGRRVDNQRLEFLGDAVLGLCVTELLMERFPGAREGELSMM 76

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
            ++LV+ +  +  AR ++L + +RV            T++ AD  E+L+AALYLD G E 
Sbjct: 77  RSALVNTDALAAWARGIELGAALRVGRGAEVAGERDQTNVLADATEALVAALYLDRGFES 136

Query: 135 AGTFVDKYWKQRALKSGK---FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
           A     K       +        RDAK+ELQE   A+   +P Y++    GPDHD  F V
Sbjct: 137 ARALSRKIAASPLAQLASGSLLGRDAKSELQERVQARGAASPRYRLMGTEGPDHDRAFLV 196

Query: 192 VVEISGLAPAQGMDCSKR 209
            VE+ G     G   SK+
Sbjct: 197 AVEVDGQVIGTGRGRSKK 214


>gi|120403163|ref|YP_952992.1| ribonuclease III [Mycobacterium vanbaalenii PYR-1]
 gi|119955981|gb|ABM12986.1| RNAse III [Mycobacterium vanbaalenii PYR-1]
          Length = 235

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 63/194 (32%), Positives = 96/194 (49%), Gaps = 8/194 (4%)

Query: 21  SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            LL  ALTH S S+      + ERLEFLGD +LGL I+  L++      EG+L+    S+
Sbjct: 19  ELLTIALTHRSYSYENGGVPTNERLEFLGDSVLGLTITEELYHRHPDRSEGDLAKLRASI 78

Query: 79  VSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
           V+ +  + V R L    L +++ +         +  +SI AD VESL+ A+YL+ G EVA
Sbjct: 79  VNTQALADVGRNLTEHGLGAYLLLGKGEENSGGADKSSILADGVESLLGAIYLECGGEVA 138

Query: 136 GTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
              + + +      +       D K+ LQE   ++    P Y VT  +GPDHD  FT  V
Sbjct: 139 REVILRLFSSLLDTAPTLGAGLDWKSSLQELTASRGLGAPTYVVTS-TGPDHDKEFTAAV 197

Query: 194 EISGLAPAQGMDCS 207
            +      +G+  +
Sbjct: 198 MVGDSECGRGVGRT 211


>gi|15610062|ref|NP_217441.1| ribonuclease III [Mycobacterium tuberculosis H37Rv]
 gi|15842471|ref|NP_337508.1| ribonuclease III [Mycobacterium tuberculosis CDC1551]
 gi|31794102|ref|NP_856595.1| ribonuclease III [Mycobacterium bovis AF2122/97]
 gi|121638807|ref|YP_979031.1| ribonuclease III [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148662771|ref|YP_001284294.1| ribonuclease III [Mycobacterium tuberculosis H37Ra]
 gi|148824115|ref|YP_001288869.1| ribonuclease III [Mycobacterium tuberculosis F11]
 gi|167969555|ref|ZP_02551832.1| ribonuclease III [Mycobacterium tuberculosis H37Ra]
 gi|215404901|ref|ZP_03417082.1| ribonuclease III [Mycobacterium tuberculosis 02_1987]
 gi|215412768|ref|ZP_03421480.1| ribonuclease III [Mycobacterium tuberculosis 94_M4241A]
 gi|215428370|ref|ZP_03426289.1| ribonuclease III [Mycobacterium tuberculosis T92]
 gi|215431873|ref|ZP_03429792.1| ribonuclease III [Mycobacterium tuberculosis EAS054]
 gi|215447189|ref|ZP_03433941.1| ribonuclease III [Mycobacterium tuberculosis T85]
 gi|218754678|ref|ZP_03533474.1| ribonuclease III [Mycobacterium tuberculosis GM 1503]
 gi|224991299|ref|YP_002645988.1| ribonuclease III [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253797986|ref|YP_003030987.1| ribonuclease III rnc [Mycobacterium tuberculosis KZN 1435]
 gi|254365562|ref|ZP_04981607.1| ribonuclease III rnc (RNase III) [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254551999|ref|ZP_05142446.1| ribonuclease III [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|260187945|ref|ZP_05765419.1| ribonuclease III [Mycobacterium tuberculosis CPHL_A]
 gi|260202061|ref|ZP_05769552.1| ribonuclease III [Mycobacterium tuberculosis T46]
 gi|260206245|ref|ZP_05773736.1| ribonuclease III [Mycobacterium tuberculosis K85]
 gi|289444482|ref|ZP_06434226.1| ribonuclease III [Mycobacterium tuberculosis T46]
 gi|289448592|ref|ZP_06438336.1| ribonuclease III rnc [Mycobacterium tuberculosis CPHL_A]
 gi|289553284|ref|ZP_06442494.1| ribonuclease III rnc [Mycobacterium tuberculosis KZN 605]
 gi|289575632|ref|ZP_06455859.1| ribonuclease III rnc [Mycobacterium tuberculosis K85]
 gi|289746725|ref|ZP_06506103.1| ribonuclease III [Mycobacterium tuberculosis 02_1987]
 gi|289751594|ref|ZP_06510972.1| ribonuclease III rnc [Mycobacterium tuberculosis T92]
 gi|289755039|ref|ZP_06514417.1| ribonuclease III [Mycobacterium tuberculosis EAS054]
 gi|289759048|ref|ZP_06518426.1| ribonuclease III [Mycobacterium tuberculosis T85]
 gi|289763102|ref|ZP_06522480.1| ribonuclease III rnc (RNase III) [Mycobacterium tuberculosis GM
           1503]
 gi|297635545|ref|ZP_06953325.1| ribonuclease III [Mycobacterium tuberculosis KZN 4207]
 gi|297732544|ref|ZP_06961662.1| ribonuclease III [Mycobacterium tuberculosis KZN R506]
 gi|298526395|ref|ZP_07013804.1| ribonuclease III [Mycobacterium tuberculosis 94_M4241A]
 gi|306777216|ref|ZP_07415553.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu001]
 gi|306781126|ref|ZP_07419463.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu002]
 gi|306785762|ref|ZP_07424084.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu003]
 gi|306789802|ref|ZP_07428124.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu004]
 gi|306794615|ref|ZP_07432917.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu005]
 gi|306798860|ref|ZP_07437162.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu006]
 gi|306804705|ref|ZP_07441373.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu008]
 gi|306808897|ref|ZP_07445565.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu007]
 gi|306968996|ref|ZP_07481657.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu009]
 gi|306973333|ref|ZP_07485994.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu010]
 gi|307081039|ref|ZP_07490209.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu011]
 gi|307085639|ref|ZP_07494752.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu012]
 gi|313659876|ref|ZP_07816756.1| ribonuclease III [Mycobacterium tuberculosis KZN V2475]
 gi|54039242|sp|P66667|RNC_MYCBO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|54041614|sp|P66666|RNC_MYCTU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|1405961|emb|CAA98974.1| PROBABLE RIBONUCLEASE III RNC (RNASE III) [Mycobacterium
           tuberculosis H37Rv]
 gi|13882776|gb|AAK47322.1| ribonuclease III [Mycobacterium tuberculosis CDC1551]
 gi|31619697|emb|CAD96637.1| PROBABLE RIBONUCLEASE III RNC (RNASE III) [Mycobacterium bovis
           AF2122/97]
 gi|121494455|emb|CAL72936.1| Probable ribonuclease III rnc (rnase III) [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|134151075|gb|EBA43120.1| ribonuclease III rnc (RNase III) [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148506923|gb|ABQ74732.1| ribonuclease III [Mycobacterium tuberculosis H37Ra]
 gi|148722642|gb|ABR07267.1| ribonuclease III rnc (RNase III) [Mycobacterium tuberculosis F11]
 gi|224774414|dbj|BAH27220.1| ribonuclease III [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253319489|gb|ACT24092.1| ribonuclease III rnc [Mycobacterium tuberculosis KZN 1435]
 gi|289417401|gb|EFD14641.1| ribonuclease III [Mycobacterium tuberculosis T46]
 gi|289421550|gb|EFD18751.1| ribonuclease III rnc [Mycobacterium tuberculosis CPHL_A]
 gi|289437916|gb|EFD20409.1| ribonuclease III rnc [Mycobacterium tuberculosis KZN 605]
 gi|289540063|gb|EFD44641.1| ribonuclease III rnc [Mycobacterium tuberculosis K85]
 gi|289687253|gb|EFD54741.1| ribonuclease III [Mycobacterium tuberculosis 02_1987]
 gi|289692181|gb|EFD59610.1| ribonuclease III rnc [Mycobacterium tuberculosis T92]
 gi|289695626|gb|EFD63055.1| ribonuclease III [Mycobacterium tuberculosis EAS054]
 gi|289710608|gb|EFD74624.1| ribonuclease III rnc (RNase III) [Mycobacterium tuberculosis GM
           1503]
 gi|289714612|gb|EFD78624.1| ribonuclease III [Mycobacterium tuberculosis T85]
 gi|298496189|gb|EFI31483.1| ribonuclease III [Mycobacterium tuberculosis 94_M4241A]
 gi|308214363|gb|EFO73762.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu001]
 gi|308326021|gb|EFP14872.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu002]
 gi|308329542|gb|EFP18393.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu003]
 gi|308333690|gb|EFP22541.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu004]
 gi|308337033|gb|EFP25884.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu005]
 gi|308340847|gb|EFP29698.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu006]
 gi|308344741|gb|EFP33592.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu007]
 gi|308348661|gb|EFP37512.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu008]
 gi|308353417|gb|EFP42268.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu009]
 gi|308357236|gb|EFP46087.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu010]
 gi|308361245|gb|EFP50096.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu011]
 gi|308364828|gb|EFP53679.1| ribonuclease III rnc [Mycobacterium tuberculosis SUMu012]
 gi|323718456|gb|EGB27628.1| ribonuclease III rnc [Mycobacterium tuberculosis CDC1551A]
 gi|326904540|gb|EGE51473.1| ribonuclease III rnc [Mycobacterium tuberculosis W-148]
 gi|328457760|gb|AEB03183.1| ribonuclease III rnc [Mycobacterium tuberculosis KZN 4207]
          Length = 240

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 98/206 (47%), Gaps = 9/206 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           L   +G    +  LL  ALTH S ++      + ERLEFLGD +LGL I+  LF+     
Sbjct: 8   LLDALGVDLPD-ELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDR 66

Query: 67  KEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            EG+L+    S+V+ +  + VAR L    L   + +         +  +SI AD +ESL+
Sbjct: 67  SEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADGMESLL 126

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+YL  G+E A   + + +      +       D KT LQE   A+    P Y VT  +
Sbjct: 127 GAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYLVTS-T 185

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCS 207
           GPDHD  FT VV +       G+  S
Sbjct: 186 GPDHDKEFTAVVVVMDSEYGSGVGRS 211


>gi|312622598|ref|YP_004024211.1| ribonuclease iii [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203065|gb|ADQ46392.1| ribonuclease III [Caldicellulosiruptor kronotskyensis 2002]
          Length = 222

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 114/223 (51%), Gaps = 11/223 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             +EK +GY F +++LL  ALTH S +HS +  YERLEFLGD  L L +S  LF HF   
Sbjct: 2   EEIEKALGYKFKDKNLLRLALTHKSATHSNKNCYERLEFLGDAALELAVSKYLFVHFPEL 61

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGEL+    ++V ++T S++A +L+L + I      + +      SI ADVVE++  A+
Sbjct: 62  SEGELTNIRAAVVCSQTLSKIAEKLNLKNHIIFGKREKMEKFHENKSILADVVEAIFGAI 121

Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPE---YKVTFRS 181
           +++ G E     +    K    K  +GK   D KT+LQE+   +         Y++  + 
Sbjct: 122 FIESGFEKLEKIIVNLLKPYIQKAVAGKLFYDYKTKLQEFVQKEGQKKIVYKDYEIIEK- 180

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
                  F   + I G   ++G   SK+ A+Q AA + L   G
Sbjct: 181 -----KYFKSELFIEGKKVSEGYGTSKKEAQQDAAYKFLLEMG 218


>gi|71042598|pdb|2A11|A Chain A, Crystal Structure Of Nuclease Domain Of Ribonuclase Iii
           From Mycobacterium Tuberculosis
          Length = 242

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 98/206 (47%), Gaps = 9/206 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           L   +G    +  LL  ALTH S ++      + ERLEFLGD +LGL I+  LF+     
Sbjct: 10  LLDALGVDLPD-ELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDR 68

Query: 67  KEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            EG+L+    S+V+ +  + VAR L    L   + +         +  +SI AD +ESL+
Sbjct: 69  SEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADGMESLL 128

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+YL  G+E A   + + +      +       D KT LQE   A+    P Y VT  +
Sbjct: 129 GAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYLVTS-T 187

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCS 207
           GPDHD  FT VV +       G+  S
Sbjct: 188 GPDHDKEFTAVVVVMDSEYGSGVGRS 213


>gi|222529151|ref|YP_002573033.1| ribonuclease III [Caldicellulosiruptor bescii DSM 6725]
 gi|222455998|gb|ACM60260.1| ribonuclease III [Caldicellulosiruptor bescii DSM 6725]
          Length = 222

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 114/223 (51%), Gaps = 11/223 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             +EK +GY F +++LL  ALTH S +HS +  YERLEFLGD  L L++S  LF HF   
Sbjct: 2   EEIEKALGYKFMDKNLLRLALTHKSATHSNKNCYERLEFLGDAALELVVSKYLFVHFPEL 61

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGEL+    ++V ++T S++A +L+L + I      + +      SI  DVVE++  A+
Sbjct: 62  SEGELTNIRAAVVCSQTLSKIAEKLNLKNHIIFGKREKMEKFHENKSILTDVVEAIFGAI 121

Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPE---YKVTFRS 181
           +++ G E     +    K    K  +GK   D KT+LQE+   K         Y++  + 
Sbjct: 122 FIESGFEKLEKIIVNLLKPYIQKAVAGKLFYDYKTKLQEFVQKKGQKKIVYKDYEIIEK- 180

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
                  F   + I G   ++G   SK+ A+Q AA + L   G
Sbjct: 181 -----KYFKSELFIEGKKVSEGYGTSKKEAQQDAAYKFLLEMG 218


>gi|4378851|gb|AAD19719.1| ribonuclease III [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 222

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 74/191 (38%), Positives = 112/191 (58%), Gaps = 3/191 (1%)

Query: 18  ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
            + +L  +A+TH S  +S    Y+RLEFLGDR+LGL+I+  L++ F    EG+LS R NS
Sbjct: 18  KDPALFLRAMTHPSHGNS---DYQRLEFLGDRVLGLVIANWLYDLFPREPEGKLSRRLNS 74

Query: 78  LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137
           LVS  +C+ +AR + L  ++R+    R D  +   ++  DV+E++I A++L+ GIE AG 
Sbjct: 75  LVSGASCASIARIVGLPQWLRLGKQARDDGAAASDNVLGDVMEAMIGAIFLESGIEAAGK 134

Query: 138 FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197
            + KYW           +  K+ LQEWA A     P Y++  R+GP H+P FT+ V I+G
Sbjct: 135 LIHKYWAPLVTGQESAPKHPKSALQEWAAAHNRRPPVYEIVSRTGPQHNPCFTIQVSIAG 194

Query: 198 LAPAQGMDCSK 208
           +  A     SK
Sbjct: 195 VGEASAEGSSK 205


>gi|113475790|ref|YP_721851.1| RNAse III [Trichodesmium erythraeum IMS101]
 gi|110166838|gb|ABG51378.1| RNAse III [Trichodesmium erythraeum IMS101]
          Length = 233

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 108/226 (47%), Gaps = 16/226 (7%)

Query: 16  AFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFNHFD---SAKEG 69
            F N+ LL++ALTH S  +     +E  E LEF+GD +LG L+  LL+  +    + K  
Sbjct: 7   EFKNQKLLQQALTHRSYLNENYGDEEDNESLEFIGDALLGFLVGELLYRRYKEEHNLKPK 66

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           EL+   + LV  +  ++ A +L + + +R+     KD      ++ +D  E++I A +LD
Sbjct: 67  ELTRIRSLLVDEKQLAKFAVQLGIGAKMRLGKGAEKDGGRKNPALLSDTFEAIIGAYFLD 126

Query: 130 GGIEVAGTFVDKYWKQRALK----------SGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
             +     F+ + ++  A              K   D K + Q+WA AKFG  P Y+   
Sbjct: 127 SNLTKVKPFIKRLFEPVADNIILPNYGDNSQPKDLVDTKGKFQQWALAKFGENPRYESNN 186

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
             G DH   FT  V + G     G    K+ AE+ AA + LK+ G+
Sbjct: 187 GEGLDHAKIFTAEVRVRGKLYGVGKGNRKQEAEKSAAEKALKKVGL 232


>gi|149186754|ref|ZP_01865065.1| ribonuclease III [Erythrobacter sp. SD-21]
 gi|148829662|gb|EDL48102.1| ribonuclease III [Erythrobacter sp. SD-21]
          Length = 223

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 86/226 (38%), Positives = 126/226 (55%), Gaps = 5/226 (2%)

Query: 1   MSALRYSTLE--KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58
           MSAL   T E  ++ G+   N +L + ALTH S+    ++ YERLEFLGDR+LGL I+  
Sbjct: 1   MSALEPDTREWLEKTGFTVNNEALWQAALTHGSMGE--KDDYERLEFLGDRVLGLSIAHW 58

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L+     A EG+L+ R N++VS E C+ VAR ++L+  +R+S   R D      +I  DV
Sbjct: 59  LYEQ-SDAPEGKLAQRLNAIVSREMCAIVARGIELSEHMRISKQARADGGKDSDNILGDV 117

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +E+L+ A +LD G + +   V   W+          +  K+ LQEWA       PEY+V 
Sbjct: 118 MEALLGAQFLDNGFKKSRELVHVLWRPALESGAGESKHPKSALQEWAAGNRRKPPEYEVV 177

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            RSGPDH  +FTV V +  +  A     SK  AE+ AA + +++ G
Sbjct: 178 ERSGPDHAAQFTVKVSVHKVGEATATAGSKGEAERAAAKKFMEKFG 223


>gi|84498322|ref|ZP_00997119.1| ribonuclease III [Janibacter sp. HTCC2649]
 gi|84381822|gb|EAP97705.1| ribonuclease III [Janibacter sp. HTCC2649]
          Length = 249

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 58/196 (29%), Positives = 87/196 (44%), Gaps = 5/196 (2%)

Query: 19  NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           + +LL +ALTH S ++        ERLEFLGD +LGL+++  L+       EG+L+    
Sbjct: 25  DVALLGRALTHRSYAYEAGGIPHNERLEFLGDSVLGLVVTDSLYVTHPDLTEGQLAKLRA 84

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           ++V+    + V R L L  ++ +             SI AD VE++I A Y   G+  AG
Sbjct: 85  AVVNMRALAAVGRTLGLGDYLHLGRGEESTGGRDKDSILADTVEAVIGATYCSAGLVAAG 144

Query: 137 TFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
             V          S       D KT LQE          EY V    GP+H   F+  V 
Sbjct: 145 DLVHHLLDPLMASSATLGAGLDWKTSLQEICALHSAGPVEY-VLEEDGPEHSKTFSARVL 203

Query: 195 ISGLAPAQGMDCSKRA 210
           + G+    G+  +K+ 
Sbjct: 204 VGGVEHGSGVGRTKKD 219


>gi|116490531|ref|YP_810075.1| dsRNA-specific ribonuclease [Oenococcus oeni PSU-1]
 gi|290889932|ref|ZP_06553019.1| hypothetical protein AWRIB429_0409 [Oenococcus oeni AWRIB429]
 gi|122277282|sp|Q04GL2|RNC_OENOB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|116091256|gb|ABJ56410.1| RNAse III [Oenococcus oeni PSU-1]
 gi|290480542|gb|EFD89179.1| hypothetical protein AWRIB429_0409 [Oenococcus oeni AWRIB429]
          Length = 231

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 111/228 (48%), Gaps = 9/228 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M+ ++   +++  G  FAN+ LL +A T  +  + + E     Y+RLEFLGD ++ L+++
Sbjct: 1   MNNIQ-KGIKEDFGIEFANQDLLLEAFTQGNYLNEHPEEKGRDYQRLEFLGDSVMQLIVA 59

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  + + +EG+L+    ++V +++ S  AR      +IR+             S+  
Sbjct: 60  DYLFTRYPAWEEGQLTEMRIAMVQSKSFSHFARLAGFNRYIRLGKGEELSGARNRDSLLE 119

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPE 174
           D+ E+ I ALY D G +   TF++K +   A+  G F    D K++LQE       V  E
Sbjct: 120 DIWEAFIGALYKDQGAKAVFTFLNKAFFP-AIDEGFFEEFIDYKSKLQELLQKAGSVDIE 178

Query: 175 YKVTFRSGPDHDP-RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           YKV      D     F V V ++  A   G   S + AE+ AA +  +
Sbjct: 179 YKVENEDLSDPQKPHFEVTVFVNDKAIGSGSGRSIKIAEKRAAKKAYQ 226


>gi|221633356|ref|YP_002522581.1| ribonuclease III [Thermomicrobium roseum DSM 5159]
 gi|221156675|gb|ACM05802.1| ribonuclease III [Thermomicrobium roseum DSM 5159]
          Length = 252

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 68/209 (32%), Positives = 94/209 (44%), Gaps = 11/209 (5%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQES--------YERLEFLGDRILGLLISTLLFNH 62
           + +G AF    LL +ALTH S  +    S         ERLEFLGD +L LL+S  L+  
Sbjct: 23  EALGIAFRRPDLLRQALTHLSYVYERSRSTQAAVEEANERLEFLGDAVLELLVSEFLYRR 82

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS-FMTSIQADVVES 121
           F +A EGEL+    +LV   T ++ AR   L  F+ +               I A   E+
Sbjct: 83  FPTASEGELTAYRAALVRTPTLARWARRFRLDEFLYLGRSEVPRPGRPVRERILAGAFEA 142

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           ++ ALYLD GI V   F+ +   + A  L +     + K  LQE    +  +TP Y+   
Sbjct: 143 VLGALYLDRGIRVVRRFLHRLLLEEAEGLIAIGQNENYKGRLQELIQDRLRITPVYRTIA 202

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
            +GP H   FT  V I       G   SK
Sbjct: 203 VTGPAHQRTFTAEVLIGERPYGVGHGPSK 231


>gi|163840519|ref|YP_001624924.1| ribonuclease III [Renibacterium salmoninarum ATCC 33209]
 gi|162953995|gb|ABY23510.1| ribonuclease III [Renibacterium salmoninarum ATCC 33209]
          Length = 273

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 74/216 (34%), Positives = 105/216 (48%), Gaps = 6/216 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
           + L KR+G    +   L  ALTH S ++      + ERLEFLGD +LGL ++  L+    
Sbjct: 23  AELLKRLGVDI-DAGTLRLALTHRSFAYENGGIPTNERLEFLGDSVLGLSVTDALYRDNP 81

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGEL+ R +++VS    + VAREL +  FI +             SI AD +E+L  
Sbjct: 82  GLAEGELAKRRSAVVSTRALAGVARELGVGEFILLGQGELLTDGKNKASILADTMEALFG 141

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A Y+   IE A   V +        +G F    D KT +QE A  +      Y+VT + G
Sbjct: 142 AAYICNDIETARQMVMRLVGPLLADAGNFGAATDWKTNIQEHAANRQLGPVRYEVTGQ-G 200

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           PDH   +  ++ I G +   G   SK+ AEQ AAA 
Sbjct: 201 PDHARTYQALLWIGGTSYQSGRGHSKKEAEQDAAAN 236


>gi|289547872|ref|YP_003472860.1| ribonuclease III [Thermocrinis albus DSM 14484]
 gi|289181489|gb|ADC88733.1| ribonuclease III [Thermocrinis albus DSM 14484]
          Length = 237

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 78/218 (35%), Positives = 123/218 (56%), Gaps = 11/218 (5%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +EK +GY+F + SLLE+ALTH S++   + SYE LEFLGD ++ L +  LL  +F  ++E
Sbjct: 12  IEKVLGYSFRDPSLLEEALTHRSVA-VGRRSYEVLEFLGDALINLFVVDLLLQNFPQSRE 70

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+L++     VS +  SQ+++EL L S I++     +   +  +SI ADV E+L  A+Y+
Sbjct: 71  GQLAIMKAFFVSEDFLSQLSQELGLESLIKM----ERRRKNISSSILADVFEALWGAIYM 126

Query: 129 DGG--IEVAGTFVDKYWKQRAL---KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           D G  +        K + +R L   K G +R+D KT LQE     +   P Y++    GP
Sbjct: 127 DTGRDLNTTRDLFFKNYGERILQVVKEGSYRKDYKTLLQELTQHLWKTRPTYRLIGTEGP 186

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            H+  F V  ++ G   A G   SK+ AEQ +A ++ +
Sbjct: 187 HHNRIFEVECQV-GSYRAVGKGKSKKEAEQESAKKLYE 223


>gi|237750847|ref|ZP_04581327.1| ribonuclease III [Helicobacter bilis ATCC 43879]
 gi|229373292|gb|EEO23683.1| ribonuclease III [Helicobacter bilis ATCC 43879]
          Length = 228

 Score =  214 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 60/200 (30%), Positives = 99/200 (49%), Gaps = 3/200 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LE+++ Y F N+  L +AL H S    Y  + ERLEFLGD +L L++   LF  F    E
Sbjct: 12  LEQKLNYTFKNKKKLAEALAHKSFKKPY--NNERLEFLGDAVLDLVVGEYLFETFTQKNE 69

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G LS    SLV+  +  ++A+ ++L  ++ +S+    +      SI ++  E+++A +YL
Sbjct: 70  GSLSKMRASLVNEASFCKLAQSINLGEYLNLSTSEINNGGRLKASILSNAFEAIMAVIYL 129

Query: 129 DGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           + G++               +       D K+ LQE+   +FG  P Y++  + GPDH  
Sbjct: 130 ESGLDSVKRVFYPILHNEFRINEELLTSDYKSSLQEYTQERFGCIPSYEMLSQEGPDHKK 189

Query: 188 RFTVVVEISGLAPAQGMDCS 207
            FT+ V+I     A     S
Sbjct: 190 IFTMQVKIQNKIYASANGVS 209


>gi|320093928|ref|ZP_08025763.1| ribonuclease III [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319979140|gb|EFW10648.1| ribonuclease III [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 239

 Score =  214 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 60/208 (28%), Positives = 93/208 (44%), Gaps = 7/208 (3%)

Query: 19  NRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           + +LL  AL H S ++      + ERLEFLGD +L ++I+  LF+ +    E +LS    
Sbjct: 27  DGALLSLALVHRSYANEAGGIANNERLEFLGDSVLSVVIAERLFHDYPDVAESDLSRMRA 86

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           + VS    +  AR + L  ++ +             SI +D  E+LI A YL  G++ A 
Sbjct: 87  ATVSQAPLAAAARRIGLGDYVYLGKGESLHGGRDKDSILSDTFEALIGATYLTHGLQAAR 146

Query: 137 TFVDKY--WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
             V +   +     +     +D KT L E++         Y+V    GPDH   FT    
Sbjct: 147 RVVLERLSFLLEDAQERGHHQDWKTLLVEYSQEHGLGEVSYEVEGE-GPDHRRVFTARAF 205

Query: 195 ISGL--APAQGMDCSKRAAEQVAAAEVL 220
           I+G+      G   SK+ AE  AA   +
Sbjct: 206 IAGIDGPVGSGRATSKKHAENAAAQNAM 233


>gi|170079136|ref|YP_001735774.1| ribonuclease III [Synechococcus sp. PCC 7002]
 gi|169886805|gb|ACB00519.1| ribonuclease III [Synechococcus sp. PCC 7002]
          Length = 258

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 66/197 (33%), Positives = 96/197 (48%), Gaps = 9/197 (4%)

Query: 16  AFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            F    LL +ALTH S ++   E     ERLEFLGD +L  ++  LL+  +   +EGELS
Sbjct: 6   PFQRSPLLLQALTHRSFANEQPETIQDNERLEFLGDAVLKFIMGKLLYERYPDFQEGELS 65

Query: 73  VRFNSL-VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131
               SL  +    ++ A+ L L   +R+     K+       I ++  E+++ A +LD G
Sbjct: 66  RLRASLENNRHQLAEFAQVLGLDQILRLGKGAEKEGARQNPEILSNTFEAVVGAYFLDAG 125

Query: 132 IEVAGTFVDKYWKQRALK-----SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           IE A  FV+      A +     S    ++ K +LQEWA A  G  P+YK    SG DH 
Sbjct: 126 IEAAIAFVETLVIPVADRLVQQPSDPLAQNFKGQLQEWALANHGEIPKYKTLNESGADHA 185

Query: 187 PRFTVVVEISGLAPAQG 203
             FTV V + G    +G
Sbjct: 186 KTFTVAVYLQGQEWGRG 202


>gi|291299631|ref|YP_003510909.1| ribonuclease III [Stackebrandtia nassauensis DSM 44728]
 gi|290568851|gb|ADD41816.1| ribonuclease III [Stackebrandtia nassauensis DSM 44728]
          Length = 243

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 67/209 (32%), Positives = 101/209 (48%), Gaps = 8/209 (3%)

Query: 20  RSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
             +L  A+TH S ++      + ERLEFLGD +LGL+++  L+  F    EG+L+    S
Sbjct: 25  PKMLTLAMTHRSYAYERGGLPTNERLEFLGDAVLGLVVTATLYRQFPDLPEGQLARLRAS 84

Query: 78  LVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
           +V+    + VAR L    +   + +             SI AD VE+L+ ALYL+ G++V
Sbjct: 85  VVNMRALAGVARALGPGGVGPHLLLGKGEESSGGRDKNSILADSVEALLGALYLEHGMDV 144

Query: 135 AGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
           A   V K +      + +     D KT LQE         P+Y+    +GPDH  RFT  
Sbjct: 145 AAGVVHKLFDPMIEVAARRGAALDWKTSLQELTSGAGLGVPDYR-ISETGPDHAKRFTAW 203

Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             + G    +G   SK+ AEQ+AA    +
Sbjct: 204 AVVGGEEFGEGTGGSKKEAEQIAAERAWR 232


>gi|229552452|ref|ZP_04441177.1| ribonuclease III [Lactobacillus rhamnosus LMS2-1]
 gi|229314189|gb|EEN80162.1| ribonuclease III [Lactobacillus rhamnosus LMS2-1]
          Length = 231

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 64/210 (30%), Positives = 98/210 (46%), Gaps = 7/210 (3%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIST 57
           ++   S L +R G  F + SLL++A THSS  + ++E      ERLEFLGD +L L +S 
Sbjct: 3   ASEFVSELRQRYGIEFHDLSLLDEAFTHSSYVNEHKELGLKDNERLEFLGDAVLELTVSD 62

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            L+  F    EG+L+    + V     S  ++E     +I++     K       ++  D
Sbjct: 63  YLYRKFPDKPEGDLTRIRAAAVQTAAFSAFSKEAHFDRYIKLGKGEEKAGARQRLTLLED 122

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEY 175
           + E+   ALYLD G E    F  +    + + +G+F   +D KT LQE       V   Y
Sbjct: 123 LFEAFNGALYLDQGREANIKFTKQIIFPK-IDAGEFSADQDHKTALQETLQQNGDVAIVY 181

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205
            +    GP H+ +F V VE+ G     G  
Sbjct: 182 HLLDEKGPAHERQFHVDVEVEGRVLGTGFG 211


>gi|239617283|ref|YP_002940605.1| ribonuclease III [Kosmotoga olearia TBF 19.5.1]
 gi|239506114|gb|ACR79601.1| ribonuclease III [Kosmotoga olearia TBF 19.5.1]
          Length = 249

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 70/214 (32%), Positives = 107/214 (50%), Gaps = 11/214 (5%)

Query: 19  NRSLLEKALTHSSISHS------YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           +   + KAL HSS ++         ES ERLEFLGD +L L ++ LL+  +    EG +S
Sbjct: 20  DTEWIFKALCHSSYANEVVRKGMNVESNERLEFLGDAVLALSLADLLYREY-DVDEGVMS 78

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                + S +  ++VAR +++  ++ +     K       SI AD  E+++ ALYL  G 
Sbjct: 79  KTRAVVASEKVLAEVARNMNIGEYLLLGKGELKTGGRGRDSILADAFEAILGALYLSEGF 138

Query: 133 EVAGTFVDK---YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
           E+A  FV +    + ++AL   +   D KT LQE      GV PEY      G   +  F
Sbjct: 139 EIARNFVKEKLGIYIEKALN-KELVLDYKTTLQELTQGNLGVRPEYSYIENIGTPQNKLF 197

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            V V ++G A A G   +K+AAEQ AA +  ++ 
Sbjct: 198 HVEVRVNGKALAVGYGKTKKAAEQDAARKAYEKL 231


>gi|281358070|ref|ZP_06244554.1| ribonuclease III [Victivallis vadensis ATCC BAA-548]
 gi|281315443|gb|EFA99472.1| ribonuclease III [Victivallis vadensis ATCC BAA-548]
          Length = 232

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 115/223 (51%), Gaps = 5/223 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLF 60
           A     L+KR+G+A    + L +A+TH S +  ++     +RLEFLGD +L ++++  LF
Sbjct: 2   ARNIEELKKRLGFAGPWSNRLAEAVTHRSYAVENNLGYDNQRLEFLGDAVLEIILTEYLF 61

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + +  A EGE++   ++LV     +++AR  +L  ++           +   S  AD+ E
Sbjct: 62  HLYPDAAEGEMTKIRSALVREPALARLARRFELGEYLLTGRGEHDSGGADRDSTLADLFE 121

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVT 178
           +++ A YLD G +    FV    +             + K +LQE++   +G+TP+Y + 
Sbjct: 122 AVLGAFYLDAGFDATRQFVTGLIRDEYPDPRSLLTSINPKGQLQEYSQRHWGLTPKYSIL 181

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             SGP+H P + V V +S    A G   +++AAE  AA ++ +
Sbjct: 182 HTSGPEHLPVYEVEVRLS-RYNAVGRAANRKAAEGDAARQLYR 223


>gi|258539823|ref|YP_003174322.1| ribonuclease III [Lactobacillus rhamnosus Lc 705]
 gi|257151499|emb|CAR90471.1| Ribonuclease III [Lactobacillus rhamnosus Lc 705]
          Length = 231

 Score =  214 bits (545), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 64/210 (30%), Positives = 98/210 (46%), Gaps = 7/210 (3%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIST 57
           ++   S L +R G  F + SLL++A THSS  + ++E      ERLEFLGD +L L +S 
Sbjct: 3   ASEFVSELRQRYGIEFHDLSLLDEAFTHSSYVNEHKELGLKDNERLEFLGDAVLELTVSD 62

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            L+  F    EG+L+    + V     S  ++E     +I++     K       ++  D
Sbjct: 63  YLYRKFPDKPEGDLTRIRAAAVQTAAFSAFSKEAHFDRYIKLGKGEEKAGARQRLTLLED 122

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEY 175
           + E+   ALYLD G E    F  +    + + +G+F   +D KT LQE       V   Y
Sbjct: 123 LFEAFNGALYLDQGREANIKFAKQIIFPK-IDAGEFSADQDHKTALQETLQQNGDVAIVY 181

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205
            +    GP H+ +F V VE+ G     G  
Sbjct: 182 HLLDEKGPAHERQFHVDVEVEGRVLGTGFG 211


>gi|257063721|ref|YP_003143393.1| ribonuclease III [Slackia heliotrinireducens DSM 20476]
 gi|256791374|gb|ACV22044.1| ribonuclease III [Slackia heliotrinireducens DSM 20476]
          Length = 300

 Score =  214 bits (545), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 76/220 (34%), Positives = 110/220 (50%), Gaps = 4/220 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNH 62
           +    ++ IG  F N  +L  A+TH S +     + SYERLEFLGD ILG +++   F+ 
Sbjct: 11  KIQRAQEIIGTQFGNTDILLHAITHPSATEGKPVKLSYERLEFLGDSILGAIVANEAFHR 70

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +    EG L+    +LVS  + S+VA EL     I   S  +      + S   +V E++
Sbjct: 71  YPDLDEGGLTRIKVALVSGASLSKVAAELGFEDIIVFGSSEQGTGKRGLHSALENVYEAV 130

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           +AALYLD G+E A +FV K    R   +      + K+ LQE    + G+TP YK+    
Sbjct: 131 VAALYLDQGMEGARSFVMKTLVPRMSRELATEPENPKSALQEKLQEE-GITPTYKLVETQ 189

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           GP HD  F   V     A A GM  +K+ +E  AA   L+
Sbjct: 190 GPPHDRTFVSQVFAGMKALASGMGRTKKESESQAAKAALE 229


>gi|229815433|ref|ZP_04445765.1| hypothetical protein COLINT_02481 [Collinsella intestinalis DSM
           13280]
 gi|229808966|gb|EEP44736.1| hypothetical protein COLINT_02481 [Collinsella intestinalis DSM
           13280]
          Length = 241

 Score =  214 bits (545), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 75/213 (35%), Positives = 105/213 (49%), Gaps = 4/213 (1%)

Query: 1   MSALRYSTL-EKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLIST 57
           MS      L ++  G+ F +  LL  A+TH S         SYERLEFLGD ILG +++ 
Sbjct: 1   MSIADKLALAQEICGHEFTDVQLLRSAITHPSAVEGEPVSASYERLEFLGDSILGSIVAL 60

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF  + +  EG+L+    SLVS  T S+V  EL +   I + +  +      M S   +
Sbjct: 61  SLFKTYGAFDEGKLTRLKVSLVSGATLSEVGLELGIDKIIILGASEQGTGARGMHSALEN 120

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYK 176
           V E+LI ALYLDGG +VA  F+ +  K        +   + K+ LQE   +     P YK
Sbjct: 121 VYEALIGALYLDGGWDVAEAFITRTLKPHLADERAEHPSNPKSYLQECVQSDRMDPPAYK 180

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           V    GP H P FT V  + G+   +G   SK+
Sbjct: 181 VIGEDGPAHQPTFTAVALVDGIRRGRGTGSSKK 213


>gi|159905527|ref|YP_001549189.1| ribonuclease III [Methanococcus maripaludis C6]
 gi|159887020|gb|ABX01957.1| Ribonuclease III [Methanococcus maripaludis C6]
          Length = 229

 Score =  214 bits (545), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 64/224 (28%), Positives = 103/224 (45%), Gaps = 7/224 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
            +  L  ++   F + ++ ++A  HSS  +  +    E  ERLE+LGD +L L+IS  LF
Sbjct: 3   NFEKLLSKLDIKFNDLNIFKRAFMHSSYVNEQKNTNLEDNERLEYLGDAVLELIISEYLF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
              ++  EGE+S      V        A++L   +++ +             +I +DV E
Sbjct: 63  KQ-ENLSEGEMSKLRAKYVCESALFTYAKKLKFDNYVLLGKGELISKGYNKPAIVSDVFE 121

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + IAA+YLD G+  A  FV  +      +S K    D KT+LQE+       +  Y    
Sbjct: 122 AFIAAIYLDQGLNSAKKFVYNHILPIIEESSKELFIDYKTKLQEF-PELINKSINYVNLE 180

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +G  HD +F V V+       +G+  SK+ AE  AA   L + 
Sbjct: 181 EAGEPHDKKFVVAVKQDRKILGKGIGKSKKEAEMKAAKNALLKL 224


>gi|320108696|ref|YP_004184286.1| ribonuclease III [Terriglobus saanensis SP1PR4]
 gi|319927217|gb|ADV84292.1| ribonuclease III [Terriglobus saanensis SP1PR4]
          Length = 252

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 72/243 (29%), Positives = 115/243 (47%), Gaps = 24/243 (9%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLIST 57
           M+    + L +R+GY F +  LL+ ALTHSS++       ES ER+EF+GD ++GL+++ 
Sbjct: 1   MAKAAKTGLAERLGYKFRDAKLLDLALTHSSLAFEAGTASESNERMEFVGDAVVGLIVAE 60

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF  F S  EGEL+     LVS +   +V   L L  ++++     +       ++ A+
Sbjct: 61  SLFQRFPSLGEGELTRMRALLVSRKHLGEVGARLGLGEYLQLGRGEEQSGGRKKPALMAN 120

Query: 118 VVESLIAALYLDGGIEVAGTFVDK---YWKQRALKSGKFRR--------DAKTELQEWAH 166
            +E+++AA+YLDGG+      V++     K   L+     +        D K+ LQE   
Sbjct: 121 AMEAVLAAVYLDGGLSAVQEIVEREVVLPKMPELERAAGEQTHFGGVVGDYKSALQELLQ 180

Query: 167 AK--FGVTPEYKVTFRSGPDHDPRFTVVVEI--------SGLAPAQGMDCSKRAAEQVAA 216
           A+        Y     SGPDH   F V + +             A G   +K+AA+Q AA
Sbjct: 181 ARGVGSAVARYVTAEESGPDHRKHFRVELMLVEGDAASKKETLLAVGEGPTKKAAQQKAA 240

Query: 217 AEV 219
              
Sbjct: 241 EIA 243


>gi|302872013|ref|YP_003840649.1| ribonuclease III [Caldicellulosiruptor obsidiansis OB47]
 gi|302574872|gb|ADL42663.1| ribonuclease III [Caldicellulosiruptor obsidiansis OB47]
          Length = 222

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 114/223 (51%), Gaps = 11/223 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             +EK +GY F +++LL+ ALTH S +HS +  YERLEFLGD  L L +S  L+ +F   
Sbjct: 2   EEIEKALGYKFEDKNLLKLALTHKSATHSNKNCYERLEFLGDAALELAVSKYLYVYFPEL 61

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGEL+    ++V ++T S+VA +L+L + I      + +      SI ADV+E+L  A+
Sbjct: 62  SEGELTNIRAAVVCSQTLSKVAEKLNLKNHIIFGKREKMEKFHENKSILADVLEALFGAI 121

Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEY---KVTFRS 181
           +++ G +     +    K    K  +GK   D KT+LQE    +      Y   ++  + 
Sbjct: 122 FIESGFDTVEKIIVNLLKPYIQKAVAGKLFYDYKTKLQEIVQREGQKKIVYKDCEILEK- 180

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
                  F   + I G   ++G   SK+ A+Q AA + L   G
Sbjct: 181 -----KYFKSELFIEGKKVSEGYGTSKKEAQQDAAYKFLLEMG 218


>gi|199597132|ref|ZP_03210564.1| dsRNA-specific ribonuclease [Lactobacillus rhamnosus HN001]
 gi|258508646|ref|YP_003171397.1| ribonuclease III [Lactobacillus rhamnosus GG]
 gi|199591936|gb|EDZ00011.1| dsRNA-specific ribonuclease [Lactobacillus rhamnosus HN001]
 gi|257148573|emb|CAR87546.1| Ribonuclease III [Lactobacillus rhamnosus GG]
 gi|259649952|dbj|BAI42114.1| ribonuclease III [Lactobacillus rhamnosus GG]
          Length = 231

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 64/210 (30%), Positives = 98/210 (46%), Gaps = 7/210 (3%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIST 57
           ++   S L +R G  F + SLL++A THSS  + ++E      ERLEFLGD +L L +S 
Sbjct: 3   ASEFVSELRQRYGIEFHDLSLLDEAFTHSSYVNEHKELGLKDNERLEFLGDAVLELTVSD 62

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            L+  F    EG+L+    + V     S  ++E     +I++     K       ++  D
Sbjct: 63  YLYRKFPDKPEGDLTRIRAAAVQTAAFSAFSKEAHFDRYIKLGKGEEKAGARQRLTLLED 122

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEY 175
           + E+   ALYLD G E    F  +    + + +G+F   +D KT LQE       V   Y
Sbjct: 123 LFEAFNGALYLDQGREANIKFAKRIIFPK-IDAGEFSADQDHKTALQETLQQNGDVAIVY 181

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205
            +    GP H+ +F V VE+ G     G  
Sbjct: 182 HLLDEKGPAHERQFHVDVEVEGHVLGTGFG 211


>gi|269792704|ref|YP_003317608.1| ribonuclease III [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100339|gb|ACZ19326.1| ribonuclease III [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 226

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 72/206 (34%), Positives = 107/206 (51%), Gaps = 9/206 (4%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
              L+ R+GY FA+  LL +ALTHSS ++  Q     ERLEFLGD +LGL ++  L+   
Sbjct: 11  LEELQDRVGYRFADTQLLIEALTHSSFANQAQLGYCNERLEFLGDSVLGLCVAEELYRRH 70

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            S +EG L+   ++ VS+   ++  R L L   +RV   ++         + AD +E+LI
Sbjct: 71  PSEREGRLTKLKSTGVSSHNLARSGRVLGLDRVLRVGKAIK---GGPSEGMVADAMEALI 127

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            A+YLDGG+E A   V ++    +L S    +D K+ LQE A       P Y++    GP
Sbjct: 128 GAVYLDGGLEAARGIVSRHVSLDSLSS----QDPKSALQEMAQRLGIPLPSYRLVEVRGP 183

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKR 209
           +H   F V V + G     G   S+R
Sbjct: 184 EHRATFVVQVWLKGELMGVGNGGSRR 209


>gi|258592173|emb|CBE68482.1| Ribonuclease 3 (Ribonuclease III) (RNase III) [NC10 bacterium
           'Dutch sediment']
          Length = 246

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 72/211 (34%), Positives = 104/211 (49%), Gaps = 5/211 (2%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           G+ F N +LLE ALTH S +   Q      Y+RLEFLGD +  L +S  L +   +A EG
Sbjct: 18  GHRFRNSTLLEAALTHPSSTDPSQADVRLRYQRLEFLGDAVWSLYVSDALVSLLPTASEG 77

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           EL+ R   LVSA   + +A+   LA  + +S           T + +   E++I A+YLD
Sbjct: 78  ELTQRRAGLVSATALADMAQLHGLAPLLLLSKGEELTGGRLKTRVLSSSFEAVIGAIYLD 137

Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
           GG+E       +      L+      D KT LQ  A +    TP Y++  RSG  H P F
Sbjct: 138 GGLEAIRDLAREACV-NTLEGEHVTLDPKTALQHLAQSLLHATPRYRLIRRSGAPHAPTF 196

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            V V +     A+G   +++ AE+ AA + L
Sbjct: 197 EVEVIVGQSPIAKGKGRNRQEAERAAAQDAL 227


>gi|152965344|ref|YP_001361128.1| ribonuclease III [Kineococcus radiotolerans SRS30216]
 gi|151359861|gb|ABS02864.1| Ribonuclease III [Kineococcus radiotolerans SRS30216]
          Length = 224

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 63/193 (32%), Positives = 96/193 (49%), Gaps = 5/193 (2%)

Query: 19  NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           +  LLE ALTH S ++      + ERLEFLGD +LGL+++  L+  F+   EG L+    
Sbjct: 4   DAGLLELALTHRSYAYEQGGLPTNERLEFLGDSVLGLVVTHELYTRFEDVSEGRLAKLRA 63

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           ++V++   + +AR LDL + +R+            +SI AD +E++I A +L  G++ A 
Sbjct: 64  AVVNSRALADIARGLDLGAHVRLGKGELGTGGRDKSSILADTMEAVIGAAFLSVGMDGAR 123

Query: 137 TFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
            FV +        S +     D KT LQE   ++    P Y +T  SGPDH   FT    
Sbjct: 124 EFVLRLTSPLMDSSERLGAGTDWKTALQELTASEGLGVPSYAITD-SGPDHAKNFTADAV 182

Query: 195 ISGLAPAQGMDCS 207
           + G     G   S
Sbjct: 183 VGGTVLGHGEGRS 195


>gi|317495799|ref|ZP_07954162.1| ribonuclease III [Gemella moribillum M424]
 gi|316913976|gb|EFV35459.1| ribonuclease III [Gemella moribillum M424]
          Length = 237

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 69/233 (29%), Positives = 104/233 (44%), Gaps = 9/233 (3%)

Query: 1   MSALRYSTLEKRIG--YAFANR--SLLEKALTHSSISHSYQE----SYERLEFLGDRILG 52
           M       L  ++   Y F  +     + A +HSS ++  +     +YERLEFLGD ++ 
Sbjct: 1   MERTYIEKLLNKLNNEYGFNLKFGENFKMAFSHSSYTNEKKIAKHLNYERLEFLGDAVVE 60

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
           L  S  LF  F    EGEL+    S+V  +T  + A +L+L   I +     K       
Sbjct: 61  LTTSEFLFKKFPKLAEGELTKLRASIVCEKTLVKYALQLNLDKCIYLGRGEEKMGGRSRA 120

Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDK-YWKQRALKSGKFRRDAKTELQEWAHAKFGV 171
           ++ AD+ ES   ALYL+  +E    F++   + +          D KT LQE+       
Sbjct: 121 ALLADIFESFTGALYLETNLETVKIFLNNTLFTEVEDYEYSSFVDYKTILQEYVFKIKLG 180

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             EYKV    GP H   F   VEI G     G   +K+ +EQ++A + L + G
Sbjct: 181 EIEYKVLDSIGPSHSKTFISAVEIDGKQYGSGTAATKKESEQLSAKQALDKLG 233


>gi|62258114|gb|AAX77768.1| unknown protein [synthetic construct]
          Length = 265

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 67/221 (30%), Positives = 110/221 (49%), Gaps = 9/221 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            YS     +GY F + +LL +ALTH S     +++YERLEFLGD +L  +I+ +L+  F 
Sbjct: 30  EYSRFYNILGYNFKDYTLLIRALTHRS---KTKKNYERLEFLGDSVLSFVIAEVLYKQFI 86

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+LS   + LV   T +Q+A  L +  +I + +            I  DV E++I 
Sbjct: 87  DLAEGKLSQLRSKLVKGATLAQLASSLKMDEYIILGASE--QGGHKREKILEDVFEAVIG 144

Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRS 181
           A+YLD         + K+++     +     + +D+K++LQE         PEY +    
Sbjct: 145 AIYLDSDFATVKKVILKWYQPIISSINLDTIKVKDSKSKLQEILLQNALSLPEYSIETID 204

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221
           G DH+ +FTVV     L    +    S++ AEQ  A ++++
Sbjct: 205 GKDHEQQFTVVAVSKDLNLRVKAQGTSRKKAEQKTAEKMIE 245


>gi|312135000|ref|YP_004002338.1| ribonuclease iii [Caldicellulosiruptor owensensis OL]
 gi|311775051|gb|ADQ04538.1| ribonuclease III [Caldicellulosiruptor owensensis OL]
          Length = 222

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 113/223 (50%), Gaps = 11/223 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             +EK +GY F +++LL  ALTH S +HS +  YERLEFLGD  L L +S  L+ +F   
Sbjct: 2   EEIEKALGYKFEDKNLLRLALTHKSATHSNKNCYERLEFLGDAALELAVSKYLYVYFPEL 61

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGEL+    ++V ++T S+VA +L+L + I      + +      SI ADV+E+L  A+
Sbjct: 62  SEGELTNIRAAVVCSQTLSKVAEKLNLKNHIIFGKREKMEKFYENKSILADVLEALFGAI 121

Query: 127 YLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEY---KVTFRS 181
           +++ G +     +    K    K  +GK   D KT+LQE    +      Y   ++  + 
Sbjct: 122 FIESGFDTVEKIIVNLLKPYIQKAVAGKLFYDYKTKLQEIVQREGQKKIVYKDCEILEK- 180

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
                  F   + I G   ++G   SK+ A+Q AA + L   G
Sbjct: 181 -----KYFKSELFIEGKKVSEGYGTSKKEAQQDAAYKFLLEMG 218


>gi|154483581|ref|ZP_02026029.1| hypothetical protein EUBVEN_01285 [Eubacterium ventriosum ATCC
           27560]
 gi|149735491|gb|EDM51377.1| hypothetical protein EUBVEN_01285 [Eubacterium ventriosum ATCC
           27560]
          Length = 190

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 65/184 (35%), Positives = 98/184 (53%), Gaps = 1/184 (0%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
           +  ERLEFLGD +L LL S  L+ +     EG+++    SLV   T +  ARE+DL  FI
Sbjct: 2   KDNERLEFLGDAVLELLSSEYLYKNMKDMPEGKMTKLRASLVCEPTLAMDAREIDLEDFI 61

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
            +     +       SI +D  E+LI A++LDGGIE A  F+ K +    ++  K   D+
Sbjct: 62  YLGKGEDETGGRKRDSIVSDAFEALIGAIFLDGGIEEAKYFILK-FALNDIEKKKLFYDS 120

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           KT LQE  ++       Y++    GPDH+  +    +++G    +G   +K+AAEQ AA 
Sbjct: 121 KTVLQERVNSVKNGNLVYEIIKEWGPDHNKTYEAAAKLNGKIIGKGQGHTKKAAEQQAAF 180

Query: 218 EVLK 221
           + LK
Sbjct: 181 DALK 184


>gi|225847889|ref|YP_002728052.1| ribonuclease III [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644365|gb|ACN99415.1| ribonuclease III [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 238

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 118/226 (52%), Gaps = 9/226 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFN 61
           R   LEK + Y F ++SLL  A+TH S    Y    + YE LEFLGD +L L++S +L  
Sbjct: 11  RVENLEKLLDYNFKDKSLLLAAITHRSFVAEYPVKLKDYEVLEFLGDSVLSLIVSEILIK 70

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F  A+EG+LS   +++VS    S++A+ L+L  F+ +S   +    S   S+  DV E+
Sbjct: 71  QFPDAREGDLSQLRSAIVSEAYLSKLAKLLNLGQFVLISKGEKSQKGSERDSLLCDVFEA 130

Query: 122 LIAALYLDG--GIEVAGTFVDKYWKQRA---LKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           +  A+Y+D    I+      +K +K++    +K+    RD K+ LQ      +G  P+Y+
Sbjct: 131 VFGAIYIDTDYNIDTPRNVFNKLFKEKLLQDIKTENIPRDYKSLLQIETQKLYGKIPKYR 190

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +    GP+HD  F V  EI  +        SK+ AE  AA E  ++
Sbjct: 191 LIHSEGPEHDKVFVVECEIEKIKTTG-KGKSKKEAETQAAKEAFRK 235


>gi|89900532|ref|YP_523003.1| ribonuclease III [Rhodoferax ferrireducens T118]
 gi|122479398|sp|Q21XN1|RNC_RHOFD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|89345269|gb|ABD69472.1| RNAse III [Rhodoferax ferrireducens T118]
          Length = 228

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 77/209 (36%), Positives = 108/209 (51%), Gaps = 6/209 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            L+ R+ + F+N  LL +ALTH S S    +  ERLEFLGD +LGL ++ LL+    +  
Sbjct: 7   ALQARLQHEFSNPGLLTRALTHRSFS---LDHNERLEFLGDSVLGLAVADLLYERLSTLP 63

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG+LS    +LV  +T   +A  L L   IR+     +       SI AD +E++I A+Y
Sbjct: 64  EGDLSRVRANLVKQDTLHHLALGLGLPEVIRLGEGEARSGGHKRPSILADALEAVIGAVY 123

Query: 128 LDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           LD G  VA   V + ++   +KS      +D KTELQEW   +    P Y+V    G  H
Sbjct: 124 LDAGFAVAQGLVRRLFQAVEIKSDMEAIGKDPKTELQEWLQGRKMNLPLYRVVATLGAAH 183

Query: 186 DPRFTVVVEISGLA-PAQGMDCSKRAAEQ 213
              F V  EI  L    +G+  S+RA EQ
Sbjct: 184 KQTFDVECEIVELNFLERGIGGSRRAGEQ 212


>gi|134045095|ref|YP_001096581.1| ribonuclease III [Methanococcus maripaludis C5]
 gi|132662720|gb|ABO34366.1| RNAse III [Methanococcus maripaludis C5]
          Length = 229

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 64/224 (28%), Positives = 102/224 (45%), Gaps = 7/224 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
            +  L  ++   F + ++ ++A  HSS  +  +    E  ERLE+LGD +L L+I   LF
Sbjct: 3   NFEKLLSKLDIKFNDLNIFKRAFMHSSYVNEQKNTNLEDNERLEYLGDAVLELIIIEYLF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
              ++  EGE+S      V        A++L+  ++I +             +I +DV E
Sbjct: 63  KK-ENLSEGEMSKLRAKYVCESALFTYAKKLNFNNYILLGKGELNSKGYNKPAIISDVFE 121

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + IAA+YLD G++ A  FV         +S K    D KT LQE        T +Y    
Sbjct: 122 AFIAAIYLDQGLDSAKKFVYNNIIPIIEESSKELFIDHKTRLQE-LPELNNKTIKYVKLE 180

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +G  HD +F + V+       +G+  SK+ AE  AA   L + 
Sbjct: 181 EAGKPHDKKFVIAVKSGQKMLGKGIGKSKKEAEMKAAKNALLKL 224


>gi|50365047|ref|YP_053472.1| ribonuclease III, dsRNA-specific ribonuclease [Mesoplasma florum
           L1]
 gi|81391925|sp|Q6F1N5|RNC_MESFL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|50363603|gb|AAT75588.1| ribonuclease III, dsRNA-specific ribonuclease [Mesoplasma florum
           L1]
          Length = 231

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 114/226 (50%), Gaps = 6/226 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61
           +      +  G    +  +   ALTH+S ++  +  E+Y+RLEFLGD +L + +S  L+ 
Sbjct: 1   MTMHEFFENFGIKINDSKIFSTALTHNSYANETKTKETYQRLEFLGDAVLQMYVSKFLYL 60

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +F +A EG+L+   + +V  ET S++A+ +DL   IR+     K       SI +DV E+
Sbjct: 61  NFTNAPEGKLTKTRSDIVRQETLSEIAKMIDLGKIIRLGQGEIKSKGYEKPSILSDVYEA 120

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + AA+YLD   EV  +++     +   K+   +   D K+ELQE   A+     EY+V  
Sbjct: 121 VTAAIYLDQTEEVLISWIKSTIFKYIEKNDYKELNHDYKSELQEIIQAEIRSDLEYRVES 180

Query: 180 RS--GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +     D+   +TV V + G     G   SK+ A Q AA + L + 
Sbjct: 181 QKHIEKDNKIEYTVSVNLDGKKYGIGTGFSKQEASQNAAKDCLNKL 226


>gi|156501954|ref|YP_001428019.1| ribonuclease III [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|290954597|ref|ZP_06559218.1| ribonuclease III [Francisella tularensis subsp. holarctica URFT1]
 gi|295311940|ref|ZP_06802764.1| ribonuclease III [Francisella tularensis subsp. holarctica URFT1]
 gi|189043315|sp|A7NAR0|RNC_FRATF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|156252557|gb|ABU61063.1| ribonuclease III [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 230

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 67/221 (30%), Positives = 111/221 (50%), Gaps = 9/221 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            YS     +GY F + +LL +ALTH S     +++YERLEFLGD +L  +I+ +L+  F 
Sbjct: 4   EYSRFYNILGYNFKDYTLLIRALTHRS---KTKKNYERLEFLGDSVLSFVIAEVLYKQFT 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+LS   + LV   T +Q+A  L +  +I + +       +    I  DV E++I 
Sbjct: 61  DLAEGKLSQLRSKLVKGTTLAQLASSLKMDEYIILGASE--QGGNKREKILEDVFEAVIG 118

Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRS 181
           A+YLD         + K+++     +     + +D+K++LQE         PEY +    
Sbjct: 119 AIYLDSDFATVKKVILKWYQPIISSINLDTIKVKDSKSKLQEILLQNALSLPEYSIETID 178

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221
           G DH+ +FTVV     L    +    S++ AEQ  A ++++
Sbjct: 179 GKDHEQQFTVVAVSKDLNLRVKAQGTSRKKAEQKTAEKMIE 219


>gi|134301463|ref|YP_001121431.1| ribonuclease III [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|189043317|sp|A4IWK9|RNC_FRATW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|134049240|gb|ABO46311.1| ribonuclease III [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 230

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 67/221 (30%), Positives = 110/221 (49%), Gaps = 9/221 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            YS     +GY F + +LL +ALTH S     +++YERLEFLGD +L  +I+ +L+  F 
Sbjct: 4   EYSRFYNILGYNFKDCTLLIRALTHRS---KTKKNYERLEFLGDSVLSFVIAEVLYKQFT 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+LS   + LV   T +Q+A  L +  +I + +            I  DV E++I 
Sbjct: 61  DLAEGKLSQLRSKLVKGTTLAQLASSLKMDEYIILGASE--QGGHKREKILEDVFEAVIG 118

Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRS 181
           A+YLD         + K+++     +     + +D+K++LQE         PEY +    
Sbjct: 119 AIYLDSDFATVKKVILKWYQPIISSINLDTIKVKDSKSKLQEILLQNALSLPEYSIETID 178

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221
           G DH+ +FTVV     L    +    S++ AEQ  A ++++
Sbjct: 179 GKDHEQQFTVVAVSKDLNLRVKAQGTSRKKAEQKTAEKMIE 219


>gi|222444593|ref|ZP_03607108.1| hypothetical protein METSMIALI_00205 [Methanobrevibacter smithii
           DSM 2375]
 gi|261350869|ref|ZP_05976286.1| ribonuclease III [Methanobrevibacter smithii DSM 2374]
 gi|222434158|gb|EEE41323.1| hypothetical protein METSMIALI_00205 [Methanobrevibacter smithii
           DSM 2375]
 gi|288860206|gb|EFC92504.1| ribonuclease III [Methanobrevibacter smithii DSM 2374]
          Length = 223

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 66/219 (30%), Positives = 106/219 (48%), Gaps = 3/219 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLISTLLFNHFDSA 66
           L ++      +R L + A TH S    +   Y  ERLEFLGD +L +++S  L+  +   
Sbjct: 3   LLEKFNIVPKDRHLYDVAFTHGSYGTKHGLDYTYERLEFLGDSVLNMIVSEYLYKQYPDY 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +EG+L+    + V        + EL L   I++  D  K   + + SI ADV ES + A+
Sbjct: 63  EEGKLTKLRANYVCQTALIYYSHELGLDKHIKIYGDDSKITENEVLSITADVFESFLGAI 122

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           +LD GIE A  ++ K           F  D K+ ++E+  A+  V  EYK+    G  H+
Sbjct: 123 FLDQGIEFAKDYISKIIFPYIDAKKVFFFDYKSVIKEYGDAQ-EVDIEYKIIDECGVPHN 181

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
             F + + I G     G   +K+ AEQ A+ + +K+  I
Sbjct: 182 KTFIISILIDGKEMGVGKGKNKKEAEQAASKQAMKKLKI 220


>gi|300783718|ref|YP_003764009.1| ribonuclease III [Amycolatopsis mediterranei U32]
 gi|299793232|gb|ADJ43607.1| ribonuclease III [Amycolatopsis mediterranei U32]
          Length = 234

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 69/210 (32%), Positives = 103/210 (49%), Gaps = 8/210 (3%)

Query: 19  NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           +  LL  +LTH S ++        ERLEFLGD +LGL+++  L+N      EG+L+    
Sbjct: 10  DPELLRLSLTHRSYAYENGGLPPNERLEFLGDAVLGLVVTDHLYNTHPDLPEGQLAKLRA 69

Query: 77  SLVSAETCSQVAR---ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           S+V+    ++VAR   E  L + + +             SI AD +E++I A+YL+ GIE
Sbjct: 70  SVVNMHALARVARGLGEGGLGAHLLLGKGEELTGGRDKASILADGLEAVIGAVYLEHGIE 129

Query: 134 VAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
           +A   V   +     ++       D KT LQE   +     PEYKV   +GPDH   FT 
Sbjct: 130 IARKLVHHLFDGLLAEAPLRGAGLDWKTSLQELTASAGLGVPEYKVED-TGPDHRKEFTA 188

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V ++G     G   +K+ AEQ AA    +
Sbjct: 189 TVLVAGRPLGHGAGSTKKEAEQKAAETAWR 218


>gi|254415469|ref|ZP_05029229.1| ribonuclease III [Microcoleus chthonoplastes PCC 7420]
 gi|196177650|gb|EDX72654.1| ribonuclease III [Microcoleus chthonoplastes PCC 7420]
          Length = 239

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 92/206 (44%), Gaps = 11/206 (5%)

Query: 16  AFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
              N +L   ALTH S  + +    E  ERLEFLGD +LG ++  LL+  +    E  L+
Sbjct: 18  TIKNETLRLSALTHRSYVNEHPKAGEHNERLEFLGDAVLGFVVGELLYKRYPDVSEAHLT 77

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
               +LV  +  ++ A +L +   +R+     K+      ++ +D +E+ +AA Y++ GI
Sbjct: 78  RLRANLVDEKQLAKFASQLGIGDLMRLGKGADKEGGRQNPALLSDTLEAYMAAYYIESGI 137

Query: 133 EVAGTFVDKYWK--------QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           +    F+   +         Q++    K   D K   Q+WA A F   P Y +   SG D
Sbjct: 138 DAVRQFIYPLFSRVADSIAVQQSDTEPKNLVDPKGRFQQWALANFVENPTYSIIDESGLD 197

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRA 210
           H   FT  V + G     G    K+ 
Sbjct: 198 HAKEFTAEVRVKGKVYGVGTGRRKQD 223


>gi|319440517|ref|ZP_07989673.1| ribonuclease III [Corynebacterium variabile DSM 44702]
          Length = 247

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 108/225 (48%), Gaps = 7/225 (3%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           S   ++ L +  G   ++  +L  AL+H S ++      + ERLEFLGD +LGL ++  L
Sbjct: 18  SKTDHTPLLEAWGVELSD-GMLRLALSHRSFANENGNLPNNERLEFLGDALLGLSVAEQL 76

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  F    E ++S     +V+    ++VAREL +   I +         +   SI AD V
Sbjct: 77  YRQFPDRSESDISKMRAGVVNMYALAEVARELGMGGNILLGRGEEMTGGADKHSILADSV 136

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQE-WAHAKFGVTPEYK 176
           E+++ A+YL+ G EVA   V + ++++   +       D KT L E  +  K    P Y 
Sbjct: 137 EAMLGAIYLECGFEVARATVLRIFERKITTAPSTGLTMDWKTVLLEKMSDLKISGDPVYA 196

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            +   GPDHD  F+  V   G A   G   +K+ AE  AA E  +
Sbjct: 197 -SDVKGPDHDQTFSATVSFDGEARGTGTGHTKKEAEHHAAREAYR 240


>gi|254804568|ref|YP_003082789.1| ribonuclease III family protein [Neisseria meningitidis alpha14]
 gi|254668109|emb|CBA04665.1| ribonuclease III family protein [Neisseria meningitidis alpha14]
 gi|254670529|emb|CBA06329.1| ribonuclease III [Neisseria meningitidis alpha153]
          Length = 310

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 104/206 (50%), Gaps = 6/206 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++KR+GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F  
Sbjct: 82  HAAIQKRLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDTFPK 138

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 139 LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 198

Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +  D     A   V   + +R   +      +D KT LQE   A+    P+Y++  + G 
Sbjct: 199 VSFDADFNTAEKVVRHLFAERVRRVDFQNQAKDGKTALQEALQARRFALPKYRIEEQIGH 258

Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSK 208
            +D  F V  ++  L    +    S+
Sbjct: 259 ANDSMFVVSCDLGELGFVCRAKGTSR 284


>gi|256824933|ref|YP_003148893.1| RNAse III [Kytococcus sedentarius DSM 20547]
 gi|256688326|gb|ACV06128.1| RNAse III [Kytococcus sedentarius DSM 20547]
          Length = 228

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 68/205 (33%), Positives = 99/205 (48%), Gaps = 6/205 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64
           + LE+ +G    +  LL +A+TH S S+   +    ERLEFLGD +LGL+++  L+    
Sbjct: 6   ARLEEVVGV-PVDADLLLQAVTHRSFSYENDDAPHNERLEFLGDSVLGLVVTNHLYRANP 64

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGEL+   +++VSA      A  LDL  + R+             SI AD VE++I 
Sbjct: 65  DLPEGELAKLRSAVVSARALGGEAGRLDLGDYFRLGRGEENSGGRAKNSILADGVEAVIG 124

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YL  G++ A T V     +   +S       D KT LQE   A+    PEY++T  SG
Sbjct: 125 AVYLSSGLDAATTVVHHLLDELMEQSQTMGAALDWKTSLQELGSARGLGLPEYRITD-SG 183

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCS 207
           PDH   F     + G     G   +
Sbjct: 184 PDHAKLFEATAVLGGEEAGTGSGPT 208


>gi|168698810|ref|ZP_02731087.1| ribonuclease III [Gemmata obscuriglobus UQM 2246]
          Length = 215

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 64/202 (31%), Positives = 106/202 (52%), Gaps = 3/202 (1%)

Query: 21  SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
            LL  ALTH+S +++   S ERLEFLGD +LGL+    L+  F   +EG+L+   +++VS
Sbjct: 2   ELLRSALTHTSSANTRAASNERLEFLGDSVLGLVTCEQLYRRFPEYQEGDLTKVKSAVVS 61

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140
            +TC++ ++E+ L  F+ +   +         +I A+  ESL+AA++LDGG + A  FV 
Sbjct: 62  RKTCARFSQEIRLGDFLFLGRGV-NSNGEMPLNILANAFESLVAAVFLDGGWDAARDFVL 120

Query: 141 KYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
            +       +       +AK++LQ     ++G TP Y +    GPD++  F V  ++   
Sbjct: 121 DFIDPEVDRVARDAISANAKSQLQTVTQREYGDTPRYFLLDEQGPDNNKCFKVAAQVHDE 180

Query: 199 APAQGMDCSKRAAEQVAAAEVL 220
                   +K+ AE  AA   L
Sbjct: 181 RFPAAWGHTKKEAELKAAMNAL 202


>gi|269218651|ref|ZP_06162505.1| ribonuclease III [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211762|gb|EEZ78102.1| ribonuclease III [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 228

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 73/222 (32%), Positives = 111/222 (50%), Gaps = 6/222 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNH 62
           + Y  L +R G       LL  ALTH S +  + E   ERLEFLGD +LG + +  +F  
Sbjct: 1   MSYRELVERWGVDIRRP-LLRLALTHRSFAFEHDEPHNERLEFLGDSVLGFITADKVFRE 59

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F  ++EG++S      VS +  + +AREL+L  FIR+             SI +D VE+L
Sbjct: 60  FPDSREGDMSRMKTFAVSEKALASIARELELGRFIRLGRGEDLSGGRDKDSILSDTVEAL 119

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGV-TPEYKVTF 179
           IAA YL  G++VA   V++    +   +       D +T  +E AH +  V + ++++T 
Sbjct: 120 IAATYLQHGLDVARKIVERLVAAKIEDASLLGPNLDWQTSFEEVAHERGMVGSLQFELTS 179

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             GPDH   +T V  + G    +G   SK+ A Q AA    +
Sbjct: 180 E-GPDHQRVYTAVASMGGRVWGEGTGSSKKTARQAAAQVAYR 220


>gi|83589801|ref|YP_429810.1| ribonuclease III [Moorella thermoacetica ATCC 39073]
 gi|123524697|sp|Q2RJX2|RNC_MOOTA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|83572715|gb|ABC19267.1| RNAse III [Moorella thermoacetica ATCC 39073]
          Length = 233

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 60/213 (28%), Positives = 101/213 (47%), Gaps = 6/213 (2%)

Query: 1   MSALRYSTLE---KRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLI 55
           M   R   L+   ++      +   L+ ALTH + +  +      +RLEFLGD +LGL++
Sbjct: 1   MDNKRQEQLQHFWEQFHLPAIDLEGLDLALTHPTYAFEHHLPGDNQRLEFLGDAVLGLVV 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           +T L+ HF    EG+L+    ++V   +  +VAR L +   +R+             S  
Sbjct: 61  ATYLYQHFPQLPEGDLTRMRAAVVCEASLVKVARRLRVGDLLRLGQGEEHSGGRERPSNL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPE 174
           AD +E++I ++YL GG E+A  FV + +     + S     D+K+ LQE+  ++      
Sbjct: 121 ADAMEAIIGSVYLSGGYELARDFVLQIFTPALEILSDTSFIDSKSALQEFVQSQGTENVV 180

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           YK+    GPDH   +   V +     A G+  S
Sbjct: 181 YKILEEWGPDHAKGYKAGVFLKNRLLATGLGHS 213


>gi|89255958|ref|YP_513320.1| ribonuclease III [Francisella tularensis subsp. holarctica LVS]
 gi|187931188|ref|YP_001891172.1| ribonuclease III [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|254367315|ref|ZP_04983341.1| ribonuclease III [Francisella tularensis subsp. holarctica 257]
 gi|254368791|ref|ZP_04984804.1| hypothetical protein FTAG_00596 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|122501056|sp|Q2A4N2|RNC_FRATH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|238691551|sp|B2SFY4|RNC_FRATM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|89143789|emb|CAJ78994.1| Ribonuclease III [Francisella tularensis subsp. holarctica LVS]
 gi|134253131|gb|EBA52225.1| ribonuclease III [Francisella tularensis subsp. holarctica 257]
 gi|157121712|gb|EDO65882.1| hypothetical protein FTAG_00596 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|187712097|gb|ACD30394.1| ribonuclease III [Francisella tularensis subsp. mediasiatica
           FSC147]
          Length = 230

 Score =  211 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 67/221 (30%), Positives = 110/221 (49%), Gaps = 9/221 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            YS     +GY F + +LL +ALTH S     +++YERLEFLGD +L  +I+ +L+  F 
Sbjct: 4   EYSRFYNILGYNFKDYTLLIRALTHRS---KTKKNYERLEFLGDSVLSFVIAEVLYKQFT 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+LS   + LV   T +Q+A  L +  +I + +            I  DV E++I 
Sbjct: 61  DLAEGKLSQLRSKLVKGTTLAQLASSLKMDEYIILGASE--QGGHKREKILEDVFEAVIG 118

Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRS 181
           A+YLD         + K+++     +     + +D+K++LQE         PEY +    
Sbjct: 119 AIYLDSDFATVKKVILKWYQPIISSINLDTIKVKDSKSKLQEILLQNALSLPEYSIETID 178

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221
           G DH+ +FTVV     L    +    S++ AEQ  A ++++
Sbjct: 179 GKDHEQQFTVVAVSKDLNLRVKAQGTSRKKAEQKTAEKMIE 219


>gi|256027058|ref|ZP_05440892.1| ribonuclease III [Fusobacterium sp. D11]
 gi|289765042|ref|ZP_06524420.1| ribonuclease III [Fusobacterium sp. D11]
 gi|289716597|gb|EFD80609.1| ribonuclease III [Fusobacterium sp. D11]
          Length = 234

 Score =  211 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 63/236 (26%), Positives = 114/236 (48%), Gaps = 25/236 (10%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60
               LE ++ Y F +R+LL+ AL H S+ +  +E    + ERLE LGD +L L+++  L+
Sbjct: 3   NLLDLEHKLNYYFNDRNLLKNALLHKSLGNERKEYKNQNNERLELLGDAVLDLIVAEYLY 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             + +A EG ++     +VS    ++++R++ +  F+ +S            SI AD  E
Sbjct: 63  KSYKNASEGTIAKLKAMIVSEPILAKISRQIGVGKFLMLSRGEVMSGGRNRESILADSFE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +++ A+Y+D  ++ A  F   + KQ    ++  +   D K+ LQE+   +F   P YK+ 
Sbjct: 123 AILGAVYIDSNLDDARNFTLSHIKQYIDHIEEDEDILDFKSILQEYVQKEFRTVPTYKLI 182

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA---------AEQVAAAEVLKREGI 225
              GPDH   F + V +           + R          AEQ++A  +  + G+
Sbjct: 183 AERGPDHMKEFEIQVIVG----------NYREKAVAKNKKKAEQLSAKALCIKLGV 228


>gi|115314441|ref|YP_763164.1| ribonuclease III [Francisella tularensis subsp. holarctica OSU18]
 gi|122325533|sp|Q0BN07|RNC_FRATO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|115129340|gb|ABI82527.1| ribonuclease III [Francisella tularensis subsp. holarctica OSU18]
          Length = 230

 Score =  211 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 67/221 (30%), Positives = 109/221 (49%), Gaps = 9/221 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            YS     +GY F + +LL +ALTH S     +++YERLEFLGD +L  +I+ +L+  F 
Sbjct: 4   EYSRFYNILGYNFKDYTLLIRALTHRS---KTKKNYERLEFLGDSVLSFVIAEVLYKQFT 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+LS   + LV   T +Q+A  L +  +I + +            I  DV E++I 
Sbjct: 61  DLAEGKLSQLRSKLVKGTTLAQLASSLKMDEYIILGASE--QGGHKREKILEDVFEAVIG 118

Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           A+YLD         + K+++     +       +D+K++LQE         PEY +    
Sbjct: 119 AIYLDSDFATVKKVILKWYQPIISSINLDTIKFKDSKSKLQEILLQNALSLPEYSIETID 178

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221
           G DH+ +FTVV     L    +    S++ AEQ  A ++++
Sbjct: 179 GKDHEQQFTVVAVSKDLNLRVKAQGTSRKKAEQKTAEKMIE 219


>gi|269215480|ref|ZP_06159334.1| ribonuclease III [Slackia exigua ATCC 700122]
 gi|269130967|gb|EEZ62042.1| ribonuclease III [Slackia exigua ATCC 700122]
          Length = 312

 Score =  211 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 75/214 (35%), Positives = 110/214 (51%), Gaps = 4/214 (1%)

Query: 10  EKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           +  IG AF +  +L  A+TH S +     + SYERLEFLGD ILG +++   F+ +    
Sbjct: 15  QHVIGVAFDDIDILLAAITHPSATEGKPVKFSYERLEFLGDSILGAIVANEAFHAYPEID 74

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG L+    +LVS  + S VA +L  A  I   S  R      + S   +V E+L+AAL+
Sbjct: 75  EGGLTRIKVALVSGSSLSDVAAKLGFADIIVFGSSERGTGRRGLHSALENVYEALVAALF 134

Query: 128 LDGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           LD G++ A  FV +    R  ++  +   + K+ LQE    + G+TP YK+    GP HD
Sbjct: 135 LDKGMDGARDFVRRTLIPRMDIEMAREPENPKSALQEKLQEE-GITPTYKLVETQGPPHD 193

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             F   V     A AQG+  +K+ +E  AA   L
Sbjct: 194 RTFVSQVFAGLTALAQGIGRTKKESESQAAKAAL 227


>gi|119962673|ref|YP_948196.1| ribonuclease III (RNase III) [Arthrobacter aurescens TC1]
 gi|119949532|gb|ABM08443.1| putative ribonuclease III (RNase III) [Arthrobacter aurescens TC1]
          Length = 236

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 68/207 (32%), Positives = 97/207 (46%), Gaps = 6/207 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
             L KR+G +  +   L  ALTH S ++      + ERLEFLGD ILG  ++  L+    
Sbjct: 5   EELLKRLGVSI-DTETLRLALTHRSYAYENGGIPTNERLEFLGDSILGFSVTDSLYRENP 63

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           S  EGEL+ R +++VS    + + RE+ +  FI +    +        SI AD +E+LI 
Sbjct: 64  SLPEGELAKRRSAVVSTRALAGIGREIGVGEFIYLGQGEKLTDGKNKASILADTMEALIG 123

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A YL   IE A   V +        +G      D KT +QE   ++      Y V   SG
Sbjct: 124 ATYLSNDIETARQLVMRLVGPLLKDAGALGAGTDWKTSIQELTASRQLGAIHYAVEG-SG 182

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209
           PDH   F  V+ I G    +G   SK+
Sbjct: 183 PDHARTFEAVLNIGGTPYGRGSGHSKK 209


>gi|145296037|ref|YP_001138858.1| ribonuclease III [Corynebacterium glutamicum R]
 gi|140845957|dbj|BAF54956.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 247

 Score =  211 bits (538), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 109/226 (48%), Gaps = 6/226 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
            A+ +  L   +G     R LL  ALTH S ++      + ERLEFLGD +LGL ++  L
Sbjct: 19  DAVDHQPLLDHLGVDIQ-RDLLVLALTHRSFANENGMLPNNERLEFLGDAVLGLSVANKL 77

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  + S+ E ++S    S+VS    + +ARE+DL + I +             SI AD  
Sbjct: 78  YEQYPSSPESDVSKMRASIVSRYGLADIAREIDLGNHILLGKGELLTEGRSKDSILADTT 137

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKV 177
           E+L+ A++   G E A   + + +  +   +      +D KT LQE    +     EY  
Sbjct: 138 EALLGAIFRQHGFETARDVILRLFAYKIDNASARGIHQDWKTTLQEELAQRKRPMAEYSA 197

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           T   GPDHD  FT +V + G    +G   +K+ AEQ AA +  ++ 
Sbjct: 198 TSV-GPDHDLVFTAIVTLEGEEMGRGEGPNKKLAEQEAARQAFRKL 242


>gi|294782048|ref|ZP_06747374.1| ribonuclease III [Fusobacterium sp. 1_1_41FAA]
 gi|294480689|gb|EFG28464.1| ribonuclease III [Fusobacterium sp. 1_1_41FAA]
          Length = 234

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 59/198 (29%), Positives = 103/198 (52%), Gaps = 6/198 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60
               LE ++ Y F NR+LL+ AL H S+ +  +E    + ERLE LGD +L L+++  L+
Sbjct: 3   NLLDLEHKLNYYFNNRNLLKTALLHKSLGNEKKEYKNQNNERLELLGDAVLDLIVAEYLY 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            ++ SA EG ++     +VS    ++++R++ L  F+ +S            SI AD  E
Sbjct: 63  RNYKSASEGTIAKLKAMIVSEPILAKISRQIGLGKFLMLSKGEILSGGRNRESILADAFE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +++ A+Y+D  +E A +F   + +Q    ++  +   D K+ LQE+    F   P Y++ 
Sbjct: 123 AVLGAVYMDSNLEDARSFALNHIEQYITHIEEDEDILDFKSILQEYVQKNFKTVPTYELI 182

Query: 179 FRSGPDHDPRFTVVVEIS 196
              GPDH   F + V + 
Sbjct: 183 SEKGPDHMKEFEIQVVVG 200


>gi|295397856|ref|ZP_06807919.1| ribonuclease III [Aerococcus viridans ATCC 11563]
 gi|294973901|gb|EFG49665.1| ribonuclease III [Aerococcus viridans ATCC 11563]
          Length = 247

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 95/205 (46%), Gaps = 7/205 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           L  R G    + +   +A THSS  +  Q       ER+EFLGD +L L++S  L+ ++ 
Sbjct: 26  LADRFGLEIQDETHYIEAFTHSSYVNENQNLALQDNERIEFLGDAVLELVVSNYLYRNYP 85

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG +S     +V  E+ ++   E     F+R+ +           S+  D+ ES++ 
Sbjct: 86  EMDEGRMSSLRALIVREESLAKRCVECGFDQFVRLGNGEEASNGRKRPSLLCDLFESVLG 145

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YLD G++     +      + +K+G F R  DAKT LQE    +  +   Y++   SG
Sbjct: 146 AIYLDLGLDAIEHLMSLTIYPK-IKNGDFTRLSDAKTALQEELQKEGAIQLAYELESESG 204

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCS 207
           P H   F V V +      +G+  S
Sbjct: 205 PAHSKEFHVAVRLYDEIIGRGVGHS 229


>gi|294084100|ref|YP_003550858.1| Ribonuclease III [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292663673|gb|ADE38774.1| Ribonuclease III [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 230

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 81/219 (36%), Positives = 120/219 (54%), Gaps = 4/219 (1%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M ++    L +R+ + F ++S+L +ALTH+S +    +S ERLEFLGDR+LGL+++   +
Sbjct: 1   MKSVDLKPLAERLAHKFNDQSVLVRALTHASFAGP-TKSNERLEFLGDRVLGLVLADFFY 59

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                  EG+LS+R ++        +V REL+LA FI V + +     +   S+ AD VE
Sbjct: 60  GQCPDEDEGKLSLRLHADARQSKLVEVGRELELARFISVQNGMAL---AENESVIADAVE 116

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           SLIAA YLDGG EVA  F+  YW           +DAK+ LQE    +    P Y++  +
Sbjct: 117 SLIAAHYLDGGFEVARRFILAYWALDTAAPAGTDKDAKSRLQELVMKQGLALPHYRLISK 176

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           SGPDH P     V + G         +++ AEQ AAA +
Sbjct: 177 SGPDHAPEMIYEVSVEGYDSIVASASNRKLAEQQAAALM 215


>gi|237743502|ref|ZP_04573983.1| ribonuclease III [Fusobacterium sp. 7_1]
 gi|260496871|ref|ZP_05815991.1| ribonuclease III [Fusobacterium sp. 3_1_33]
 gi|229433281|gb|EEO43493.1| ribonuclease III [Fusobacterium sp. 7_1]
 gi|260196613|gb|EEW94140.1| ribonuclease III [Fusobacterium sp. 3_1_33]
          Length = 234

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 63/236 (26%), Positives = 114/236 (48%), Gaps = 25/236 (10%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60
               LE ++ Y F +R+LL+ AL H S+ +  +E    + ERLE LGD +L L+++  L+
Sbjct: 3   NLLDLEHKLNYYFNDRNLLKNALLHKSLGNERKEYKNQNNERLELLGDAVLDLIVAEYLY 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             + +A EG ++     +VS    ++++R++ +  F+ +S            SI AD  E
Sbjct: 63  KSYKNASEGTIAKLKAMIVSEPILAKISRQIGVGKFLMLSRGEVMSGGRNRESILADSFE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +++ A+Y+D  ++ A  F   + KQ    ++  +   D K+ LQE+   +F   P YK+ 
Sbjct: 123 AILGAVYIDSNLDDARNFTLSHIKQYIDHIEENEDILDFKSILQEYVQKEFRTVPTYKLI 182

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA---------AEQVAAAEVLKREGI 225
              GPDH   F + V +           + R          AEQ++A  +  + G+
Sbjct: 183 AERGPDHMKEFEIQVIVG----------NYREKAVAKNKKKAEQLSAKALCIKLGV 228


>gi|322436776|ref|YP_004218988.1| ribonuclease III [Acidobacterium sp. MP5ACTX9]
 gi|321164503|gb|ADW70208.1| ribonuclease III [Acidobacterium sp. MP5ACTX9]
          Length = 268

 Score =  211 bits (537), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 83/232 (35%), Positives = 119/232 (51%), Gaps = 26/232 (11%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE------------SYERLEFLGDRILGLLIS 56
           LE  +G+ FA  +LL  ALTH S  +   +              E+LEF+GD  LGLL +
Sbjct: 19  LETLLGHRFARPNLLTLALTHRSFVYDSGQTAPENDLADPARDNEQLEFVGDAALGLLAA 78

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L   F +++EGEL+    S+VS +   +V   LDL  ++R+     K+      ++ A
Sbjct: 79  ESLCRRFPASREGELTRLRASIVSRKHLGEVGTRLDLGRWLRLGHTAEKNDGRRNAALFA 138

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-----GKFRR------DAKTELQEWA 165
           + VE+LIAALYLDGG+EVA  FV+      A+ +     G+  R      D K+ LQE  
Sbjct: 139 NAVEALIAALYLDGGLEVARRFVEDEIVSPAIPALEQSLGEGERFAGAVGDHKSALQEML 198

Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG---LAPAQGMDCSKRAAEQV 214
            A+    PEY++   SGPDH   F+V V I G    A AQ    +K+ A+Q 
Sbjct: 199 QAEGLGRPEYRLIAESGPDHKRLFSVEVLIEGPDSEAIAQAEGPTKKQAQQE 250


>gi|148642236|ref|YP_001272749.1| ribonuclease III (dsRNA-specific), Rnc [Methanobrevibacter smithii
           ATCC 35061]
 gi|148551253|gb|ABQ86381.1| ribonuclease III (dsRNA-specific), Rnc [Methanobrevibacter smithii
           ATCC 35061]
          Length = 223

 Score =  211 bits (537), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 66/219 (30%), Positives = 106/219 (48%), Gaps = 3/219 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLISTLLFNHFDSA 66
           L ++      +R L + A TH S    +   Y  ERLEFLGD +L +++S  L+  +   
Sbjct: 3   LLEKFNILPKDRHLYDVAFTHGSYGTKHGLDYTYERLEFLGDSVLNMIVSEYLYKQYPDY 62

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +EG+L+    + V        + EL L   I++  D  K   + + SI ADV ES + A+
Sbjct: 63  EEGKLTKLRANYVCQTALIYYSHELGLDKHIKIYGDDSKITENEVLSITADVFESFLGAI 122

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           +LD GIE A  ++ K           F  D K+ ++E+  A+  V  EYK+    G  H+
Sbjct: 123 FLDQGIEFAKDYISKIIFPYIDAKKVFFFDYKSVIKEYGDAQ-EVDIEYKIIDECGVPHN 181

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
             F + + I G     G   +K+ AEQ A+ + +K+  I
Sbjct: 182 KTFIISILIDGKEMGVGKGKNKKEAEQAASKQAMKKLKI 220


>gi|296111745|ref|YP_003622127.1| dsRNA-specific ribonuclease RNaseIII [Leuconostoc kimchii IMSNU
           11154]
 gi|295833277|gb|ADG41158.1| dsRNA-specific ribonuclease RNaseIII [Leuconostoc kimchii IMSNU
           11154]
          Length = 233

 Score =  211 bits (537), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 63/221 (28%), Positives = 98/221 (44%), Gaps = 8/221 (3%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHF 63
            L       F N  LL +ALT  +  + + +     Y+RLEFLGD ++ + ++  LF  +
Sbjct: 9   HLLSEFNIQFHNEELLREALTQRNYLNEHPDEPGRDYQRLEFLGDSVMQVSVAEYLFKRY 68

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            S  EG+L+    ++V   + +  +R   L   IR+             S+  D+ E+ I
Sbjct: 69  PSWHEGQLTEMRIAMVQTRSFAHFSRVAHLNEGIRLGKGEEMSGARDRDSLLEDIWEAFI 128

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRS 181
            ALYLD G E   TF+D+     A+ +  F R  D K+ LQE       V   Y+     
Sbjct: 129 GALYLDQGSEAVRTFLDQTLFA-AIDTDFFDRFIDFKSRLQEKLQKNGAVDIAYRTESEK 187

Query: 182 G-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
               ++  F   V +     A+G   S + AE+VAA   LK
Sbjct: 188 QMIGNEQLFEASVSVDNRELARGTGKSIKDAEKVAARAALK 228


>gi|58700160|ref|ZP_00374668.1| ribonuclease III [Wolbachia endosymbiont of Drosophila ananassae]
 gi|58533321|gb|EAL57812.1| ribonuclease III [Wolbachia endosymbiont of Drosophila ananassae]
          Length = 183

 Score =  211 bits (537), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 63/178 (35%), Positives = 96/178 (53%)

Query: 47  GDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD 106
           GD +L +++S  LF  F   KEG L+ R   LV   T + VA+E+ L SFI +++  R +
Sbjct: 1   GDSVLNMVVSATLFKLFPEEKEGALAKRKTDLVCGNTIANVAKEIKLGSFIIMNNSERCN 60

Query: 107 VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH 166
                     + +E+LI A+Y+DGG+E    F+ +YW++ A       +D KT LQEW  
Sbjct: 61  GGRCNLKNLENSLEALIGAIYIDGGLENVEKFIIQYWEKLAKGMLDPPQDPKTSLQEWTQ 120

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
                 PEY++  ++GP H+P FT+ V I           SK+ AEQ AA  +L++ G
Sbjct: 121 KNKLPLPEYELVKQTGPAHNPEFTISVCIEDYGKVSACASSKKIAEQKAAELMLEKIG 178


>gi|220912984|ref|YP_002488293.1| ribonuclease III [Arthrobacter chlorophenolicus A6]
 gi|219859862|gb|ACL40204.1| Ribonuclease III [Arthrobacter chlorophenolicus A6]
          Length = 242

 Score =  211 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 66/207 (31%), Positives = 96/207 (46%), Gaps = 6/207 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
             L KR+G    +   L  ALTH S ++      + ERLEFLGD ILG  ++  L+    
Sbjct: 5   EELLKRLGVTI-DAGTLRLALTHRSYAYENGGIPTNERLEFLGDSILGFSVTDSLYRDNP 63

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGEL+ R +++VS    + + R L +  FI +    +        SI AD +E+LI 
Sbjct: 64  DLPEGELAKRRSAVVSTRALANIGRSLGIGEFIYLGQGEKLTEGKNKASILADTMEALIG 123

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A Y+   IE A   V +        +       D KT +QE A ++   T  Y V   +G
Sbjct: 124 ATYVSNDIETARQLVMRLIGPLLKDAAVLGAGTDWKTSIQELAASRQLGTIHYAVEG-AG 182

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209
           PDH   F+ V+ I G    +G   SK+
Sbjct: 183 PDHARTFSAVLNIGGKPYGKGTGHSKK 209


>gi|119509571|ref|ZP_01628718.1| ribonuclease III [Nodularia spumigena CCY9414]
 gi|119465760|gb|EAW46650.1| ribonuclease III [Nodularia spumigena CCY9414]
          Length = 226

 Score =  211 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 61/214 (28%), Positives = 97/214 (45%), Gaps = 7/214 (3%)

Query: 17  FANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
           F N  LL++ALTH S  +    ++  ERLEFLGD +L  +    L+  +    E E++ R
Sbjct: 7   FQNEKLLQQALTHRSYVNENPGEKHNERLEFLGDALLTFISGEYLYTRYPEIAEDEMTRR 66

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG--GI 132
            ++LV  +  ++ A E+ L   +R+     +D      ++ +   ES++ A YLD    I
Sbjct: 67  RSALVDEKQLAKFAIEVGLDFKMRLGRGAIQDGGFQSPNLLSSAFESVVGAYYLDCDRNI 126

Query: 133 EVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGV-TPEYKVTFRSGPDHDPRF 189
           E     +   +    +A+   +   D+K   QEW  AKFG   P+Y      G DH P +
Sbjct: 127 EKIRPIIADLFNSVPQAIMEIRSNVDSKNRFQEWVQAKFGTLLPKYITERIGGQDHAPEY 186

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              V +       G    K+ AE+ AA   L   
Sbjct: 187 LAQVFVGEQVYGYGKARGKKEAEKQAAENALSNL 220


>gi|56708583|ref|YP_170479.1| ribonuclease III [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110671054|ref|YP_667611.1| ribonuclease III [Francisella tularensis subsp. tularensis FSC198]
 gi|224457765|ref|ZP_03666238.1| ribonuclease III [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254371212|ref|ZP_04987214.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875445|ref|ZP_05248155.1| ribonuclease III [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|81597132|sp|Q5NER3|RNC_FRATT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|123359364|sp|Q14G66|RNC_FRAT1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|54112881|gb|AAV29074.1| NT02FT1862 [synthetic construct]
 gi|56605075|emb|CAG46188.1| Ribonuclease III [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110321387|emb|CAL09571.1| Ribonuclease III [Francisella tularensis subsp. tularensis FSC198]
 gi|151569452|gb|EDN35106.1| hypothetical protein FTBG_00981 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254841444|gb|EET19880.1| ribonuclease III [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282159811|gb|ADA79202.1| Ribonuclease III [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 230

 Score =  211 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 67/221 (30%), Positives = 110/221 (49%), Gaps = 9/221 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            YS     +GY F + +LL +ALTH S     +++YERLEFLGD +L  +I+ +L+  F 
Sbjct: 4   EYSRFYNILGYNFKDYTLLIRALTHRS---KTKKNYERLEFLGDSVLSFVIAEVLYKQFI 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+LS   + LV   T +Q+A  L +  +I + +            I  DV E++I 
Sbjct: 61  DLAEGKLSQLRSKLVKGATLAQLASSLKMDEYIILGASE--QGGHKREKILEDVFEAVIG 118

Query: 125 ALYLDGGIEVAGTFVDKYWKQRA--LKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRS 181
           A+YLD         + K+++     +     + +D+K++LQE         PEY +    
Sbjct: 119 AIYLDSDFATVKKVILKWYQPIISSINLDTIKVKDSKSKLQEILLQNALSLPEYSIETID 178

Query: 182 GPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221
           G DH+ +FTVV     L    +    S++ AEQ  A ++++
Sbjct: 179 GKDHEQQFTVVAVSKDLNLRVKAQGTSRKKAEQKTAEKMIE 219


>gi|42766|emb|CAA26504.1| unnamed protein product [Escherichia coli]
          Length = 227

 Score =  211 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 57/170 (33%), Positives = 95/170 (55%), Gaps = 5/170 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  + L++++GY F ++ LL++ALTH S S  +    ERLEFLGD IL  +I+  L+
Sbjct: 1   MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKH---NERLEFLGDSILSYVIANALY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F    EG++S    +LV   T +++ARE +L   +R+     K       SI AD VE
Sbjct: 58  HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRRESILADTVE 117

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAK 168
           +LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +
Sbjct: 118 ALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGR 167


>gi|193215269|ref|YP_001996468.1| ribonuclease III [Chloroherpeton thalassium ATCC 35110]
 gi|193088746|gb|ACF14021.1| Ribonuclease III [Chloroherpeton thalassium ATCC 35110]
          Length = 269

 Score =  210 bits (536), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 65/210 (30%), Positives = 95/210 (45%), Gaps = 8/210 (3%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSS------ISHSYQESYERLEFLGDRILGLLISTLLFN 61
            +E   G+  +N    E ALTH S       S     S ERLEFLGD +L L+++  L+ 
Sbjct: 42  EIESLTGFPISNVIHYETALTHRSAIDLNVYSKKKFVSNERLEFLGDAVLDLVVAECLYT 101

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F    EG+L+   + LV+A T +  AR++ L S + VS            +  AD  E+
Sbjct: 102 RFPDYDEGKLTKLRSQLVNARTLASFARKIHLGSLLIVSEAAEAIGVRDSETTLADAFEA 161

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           L+ A+YLD        F++K   +     +      + K+ L E+A A     P Y V  
Sbjct: 162 LVGAIYLDSDYLQTKRFLEKKILEGIDFRELSSTDNNFKSVLLEYAQAHHLEIPTYTVID 221

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
             GP H   FTV V I      +G+  SK+
Sbjct: 222 EEGPSHKKVFTVAVYIGDEMLGKGVGRSKK 251


>gi|300172910|ref|YP_003772075.1| ribonuclease III [Leuconostoc gasicomitatum LMG 18811]
 gi|299887288|emb|CBL91256.1| Ribonuclease III [Leuconostoc gasicomitatum LMG 18811]
          Length = 233

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 62/229 (27%), Positives = 103/229 (44%), Gaps = 9/229 (3%)

Query: 1   MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55
           MS   +   L       F + SLL++ALT  +  + +Q+     Y+RLEFLGD ++ + +
Sbjct: 1   MSQDSFKKYLLTEFNIQFNDDSLLQEALTQRNYLNEHQDESGRDYQRLEFLGDSVMQVSV 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           +  LF  + +  EG+L+    ++V   + +  +R + L   IR+             S+ 
Sbjct: 61  AEYLFKRYPNWHEGQLTEMRIAMVQTRSFAHFSRVVHLNEGIRLGKGEEMSGARDRDSLL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTP 173
            D+ E+ I ALYLD G+E    F+D+     A+ +  F R  D K+ LQE       V  
Sbjct: 121 EDIWEAFIGALYLDQGLEAVSVFLDQTLFA-AIDTDFFDRFIDFKSRLQEKLQKNGAVDI 179

Query: 174 EYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            Y+         +   F   + +     A+G   S + AE+ AA   LK
Sbjct: 180 YYRTESEQPLAGNTQLFEASISVDDHELARGTGKSIKDAEKAAARTALK 228


>gi|237740802|ref|ZP_04571283.1| ribonuclease III [Fusobacterium sp. 2_1_31]
 gi|229422819|gb|EEO37866.1| ribonuclease III [Fusobacterium sp. 2_1_31]
          Length = 234

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 60/199 (30%), Positives = 104/199 (52%), Gaps = 6/199 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60
               LE ++ Y F NR+LL+ AL H S+ +  +E    + ERLE LGD +L L+++  L+
Sbjct: 3   NLLDLEHKLNYYFNNRNLLKTALLHKSLGNEKKEYKNQNNERLELLGDAVLDLIVAEYLY 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            ++ SA EG ++     +VS    ++++R++DL  F+ +S            SI AD  E
Sbjct: 63  RNYKSASEGTIAKLKAMIVSEPILAKISRQIDLGKFLMLSKGEILSGGRNRESILADAFE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +++ A+Y+D  +E A +F   + +Q    ++  +   D K+ LQE+    F   P Y++ 
Sbjct: 123 AVLGAVYMDSNLEEARSFALGHIEQYITHIEEDEDILDFKSILQEYVQKNFKTVPTYELI 182

Query: 179 FRSGPDHDPRFTVVVEISG 197
              GPDH   F + V +  
Sbjct: 183 SEKGPDHMKEFEIQVVVGN 201


>gi|19553272|ref|NP_601274.1| ribonuclease III [Corynebacterium glutamicum ATCC 13032]
 gi|62390909|ref|YP_226311.1| ribonuclease III [Corynebacterium glutamicum ATCC 13032]
 gi|28201879|sp|Q8NNV6|RNC_CORGL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|21324844|dbj|BAB99467.1| dsRNA-specific ribonuclease [Corynebacterium glutamicum ATCC 13032]
 gi|41326248|emb|CAF20410.1| RIBONUCLEASE III [Corynebacterium glutamicum ATCC 13032]
          Length = 247

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 108/226 (47%), Gaps = 6/226 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
            A+ +  L   +G     R LL  ALTH S ++      + ERLEFLGD +LGL ++  L
Sbjct: 19  DAVDHQPLLDHLGVDIQ-RDLLVLALTHRSFANENGMLPNNERLEFLGDAVLGLSVANKL 77

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  + S+ E ++S    S+VS    + +ARE+DL + I +             SI AD  
Sbjct: 78  YEQYPSSPESDVSKMRASIVSRYGLADIAREIDLGNHILLGKGELLTEGRSKDSILADTT 137

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKV 177
           E+L  A++   G E A   + + +  +   +      +D KT LQE    +     EY  
Sbjct: 138 EALFGAIFRQHGFETARDVILRLFAYKIDNASARGIHQDWKTTLQEELAQRKRPMAEYSA 197

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           T   GPDHD  FT +V + G    +G   +K+ AEQ AA +  ++ 
Sbjct: 198 TSV-GPDHDLVFTAIVTLEGEEMGRGEGPNKKLAEQEAAHQAFRKL 242


>gi|269214809|ref|ZP_05987185.2| ribonuclease III [Neisseria lactamica ATCC 23970]
 gi|269208949|gb|EEZ75404.1| ribonuclease III [Neisseria lactamica ATCC 23970]
          Length = 267

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 105/206 (50%), Gaps = 6/206 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F  
Sbjct: 39  HAAIQKKLGYAFRDISLLRQALTHRSC---HTKHNERFEFVGDSILNYTVARMLFDAFPK 95

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 96  LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 155

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +  D     A   V   +  R  ++      +DAKT LQE   A+    P+Y++  + G 
Sbjct: 156 VSFDADFNTAEKVVRHLFADRVRRADFQNQAKDAKTALQEALQARRFALPKYRIEEQIGH 215

Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSK 208
            +D  F +  ++  L    +    S+
Sbjct: 216 ANDSMFVISCDLGELGFVCRAKGTSR 241


>gi|34764313|ref|ZP_00145147.1| Ribonuclease III [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|237741211|ref|ZP_04571692.1| ribonuclease III [Fusobacterium sp. 4_1_13]
 gi|27885913|gb|EAA23255.1| Ribonuclease III [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|229430743|gb|EEO40955.1| ribonuclease III [Fusobacterium sp. 4_1_13]
          Length = 234

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 56/199 (28%), Positives = 103/199 (51%), Gaps = 6/199 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60
               LE ++ Y F +R+LL+ AL H S+ +  +E    + ERLE LGD +L L+++  L+
Sbjct: 3   NLLDLEHKLNYYFNDRNLLKNALLHKSLGNERKEYKNQNNERLELLGDAVLDLIVAEYLY 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            ++ +A EG ++     +VS    ++++R++ +  F+ +S            SI AD  E
Sbjct: 63  KNYKNASEGTIAKLKAMIVSEPILAKISRQIGVGKFLMLSRGEVMSGGRNRESILADSFE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +++ A+Y+D  ++ A  F   + KQ    ++  +   D K+ LQE+   +F   P Y++ 
Sbjct: 123 AILGAVYMDSNLDDARNFTLSHIKQYIDHIEENEDILDFKSILQEYVQKEFRTVPTYELI 182

Query: 179 FRSGPDHDPRFTVVVEISG 197
              GPDH   F + V +  
Sbjct: 183 AERGPDHMKEFEIQVIVGN 201


>gi|299136236|ref|ZP_07029420.1| ribonuclease III [Acidobacterium sp. MP5ACTX8]
 gi|298602360|gb|EFI58514.1| ribonuclease III [Acidobacterium sp. MP5ACTX8]
          Length = 289

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 71/256 (27%), Positives = 115/256 (44%), Gaps = 39/256 (15%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----------------------SYERL 43
              L++ +G+ F    LL  ALTH S ++  +                         E+L
Sbjct: 16  IDELQRLLGHRFTRPELLALALTHRSHTYEARHGVPTVILPAHPDQRDQRNPPGTDNEQL 75

Query: 44  EFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL 103
           EFLGD ILGL+++  L+  F  + EGEL+   + LVS    ++V   L+L   + +    
Sbjct: 76  EFLGDSILGLVVTEALYREFPQSSEGELTRLRSILVSRARMAEVGVALELGEQLFLGKSA 135

Query: 104 RKDVCSFMTSIQADVVESLIAALYLDG---GIEVAGTFVDKYWKQRALKSGKFR------ 154
            ++      ++ A+ VE++IAA+YLD    G++     V++Y  +  L + +        
Sbjct: 136 DQNGGRKKPALLANAVEAIIAAVYLDAGAKGLKAVRAIVERYVLEPDLDTMRAALAGEEG 195

Query: 155 ----RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA----PAQGMDC 206
               RD KT LQE   A       Y  T ++GP H  RF+V  ++ G A     A     
Sbjct: 196 RGALRDHKTVLQERVQASGLGRLRYVDTDQTGPAHQRRFSVEAQLEGEAGTRTLAAAEGS 255

Query: 207 SKRAAEQVAAAEVLKR 222
           +K+ A+Q AA   L +
Sbjct: 256 NKKEAQQRAAELALAQ 271


>gi|329114470|ref|ZP_08243232.1| Ribonuclease 3 [Acetobacter pomorum DM001]
 gi|326696546|gb|EGE48225.1| Ribonuclease 3 [Acetobacter pomorum DM001]
          Length = 253

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 77/219 (35%), Positives = 111/219 (50%), Gaps = 12/219 (5%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISH-----------SYQESYERLEFLGDRI 50
           +  R   LE R+GY F N  LL++ALTH S +H               S ERLEF+GDR+
Sbjct: 20  ARFRLEELEVRLGYRFVNPDLLQEALTHRSAAHQKAGGRKRQKAKGAGSNERLEFIGDRV 79

Query: 51  LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110
           LGLL++  L   F + +EG L  R   LVS  + +++A  LDL   + V++   +     
Sbjct: 80  LGLLMAEWLLERFPNEQEGALGSRLAHLVSRVSLAEIADRLDLPQSLTVAAHEARAGVQT 139

Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170
             ++ AD +E+++ A++LDGG+E A   V  +W+          +D KT LQEW   +  
Sbjct: 140 AANVVADALEAVLGAVFLDGGLEPARQMVRDWWRSALDAQAHPPKDPKTALQEWVLGRGQ 199

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
             P Y+     GP H P F V V   GL   +G   SKR
Sbjct: 200 SLPVYETIGADGPSHAPLFVVRVTAGGL-FGEGRAGSKR 237


>gi|254673607|emb|CBA09131.1| ribonuclease III [Neisseria meningitidis alpha275]
          Length = 267

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 103/206 (50%), Gaps = 6/206 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++KR+GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F  
Sbjct: 39  HAAIQKRLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDTFPK 95

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 96  LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 155

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +  D     A   V   +  R   +      +D KT LQE   A+    P+Y++  + G 
Sbjct: 156 VSFDADFNTAEKVVRHLFADRVRCADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGH 215

Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSK 208
            +D  F V  ++  L    +    S+
Sbjct: 216 ANDSMFVVSCDLGELGFVCRAKGTSR 241


>gi|328777204|ref|XP_394444.3| PREDICTED: ribonuclease 3 [Apis mellifera]
          Length = 1290

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 107/228 (46%), Gaps = 14/228 (6%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  S   ++    S +RLEFLGD +L L++S  L+ +
Sbjct: 1010 KLTKFEESIGIEFTHIRLLARAFTDRSIGYTNLTLGSNQRLEFLGDTVLQLIVSEYLYKY 1069

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG LS+  +SLV+ +T + V  +L +  +    +          T  +AD++E+ 
Sbjct: 1070 FPEHHEGHLSLLRSSLVNNKTQAVVCDDLGMTQYALYGNP----KAELKTKDRADLLEAF 1125

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKF------GVTPE 174
            + ALY+D G+E    F D  +  R       +   D K++LQ+               P 
Sbjct: 1126 LGALYVDKGLEYCRVFCDVCFFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPV 1185

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YKV    GP +   +TV V   G   A+    S + AE  +A E L++
Sbjct: 1186 YKVIECKGPTNTRVYTVAVYFQGKRLAKASGHSIQEAEMNSAKEALEK 1233



 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 6/137 (4%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
           T SSI+H      ERLEFLGD ++  L S  LF+ F   +EG L+    ++V  +  + +
Sbjct: 861 TESSIAH-----NERLEFLGDAVVEFLTSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVL 915

Query: 88  ARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA 147
           A++L+L  ++  +          +    A+  E+L+ +L+LDGGIEVA     +   +  
Sbjct: 916 AKKLNLEEYMLYAHGSDLCHDLELRHAMANCFEALMGSLFLDGGIEVADRVFGETLFKDE 975

Query: 148 LKSGKFRRDA-KTELQE 163
               K   +  K  LQE
Sbjct: 976 EDLAKVWVNYPKHPLQE 992


>gi|258541744|ref|YP_003187177.1| ribonuclease III [Acetobacter pasteurianus IFO 3283-01]
 gi|256632822|dbj|BAH98797.1| ribonuclease III [Acetobacter pasteurianus IFO 3283-01]
 gi|256635879|dbj|BAI01848.1| ribonuclease III [Acetobacter pasteurianus IFO 3283-03]
 gi|256638934|dbj|BAI04896.1| ribonuclease III [Acetobacter pasteurianus IFO 3283-07]
 gi|256641988|dbj|BAI07943.1| ribonuclease III [Acetobacter pasteurianus IFO 3283-22]
 gi|256645043|dbj|BAI10991.1| ribonuclease III [Acetobacter pasteurianus IFO 3283-26]
 gi|256648098|dbj|BAI14039.1| ribonuclease III [Acetobacter pasteurianus IFO 3283-32]
 gi|256651151|dbj|BAI17085.1| ribonuclease III [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654142|dbj|BAI20069.1| ribonuclease III [Acetobacter pasteurianus IFO 3283-12]
          Length = 238

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 78/219 (35%), Positives = 111/219 (50%), Gaps = 12/219 (5%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISH-----------SYQESYERLEFLGDRI 50
           +  R   LE R+GY F N  LL++ALTH S +H               S ERLEF+GDR+
Sbjct: 5   ARFRLEELEVRLGYRFVNPDLLQEALTHRSAAHQKAGGRKRQKAKGAGSNERLEFIGDRV 64

Query: 51  LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110
           LGLL++  L   F + +EG L  R   LVS  + +++A  LDL   + V++   +     
Sbjct: 65  LGLLMAEWLLERFPNEQEGALGSRLAHLVSRVSLAEIADRLDLPQSLTVAAHEARAGVQT 124

Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170
             ++ AD +E+++ A++LDGG+E A   V  +WK          +D KT LQEW   +  
Sbjct: 125 AANVVADALEAVLGAVFLDGGLEPARQMVRDWWKSALDAQAHPPKDPKTALQEWVLGRGQ 184

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
             P Y+     GP H P F V V   GL   +G   SKR
Sbjct: 185 SLPVYETIGADGPSHAPLFVVRVTAGGL-FGEGRAGSKR 222


>gi|319410059|emb|CBY90393.1| ribonuclease III [Neisseria meningitidis WUE 2594]
          Length = 310

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 6/206 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F  
Sbjct: 82  HAAIQKKLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 138

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 139 LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 198

Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +  D     A   V   + +R   +      +D KT LQE   A+    P+Y++  + G 
Sbjct: 199 VSFDADFNTAEKVVRHLFAERVRRVDFQNQAKDGKTALQEALQARRFALPKYRIEEQIGH 258

Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSK 208
            +D  F +  ++  L    +    S+
Sbjct: 259 ANDSMFVISCDLGELGFVCRAKGTSR 284


>gi|256846347|ref|ZP_05551804.1| ribonuclease III [Fusobacterium sp. 3_1_36A2]
 gi|256718116|gb|EEU31672.1| ribonuclease III [Fusobacterium sp. 3_1_36A2]
          Length = 234

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 56/199 (28%), Positives = 103/199 (51%), Gaps = 6/199 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60
               LE ++ Y F +R+LL+ AL H S+ +  +E    + ERLE LGD +L L+++  L+
Sbjct: 3   NLLDLEHKLNYYFNDRNLLKNALLHKSLGNERKEYKNQNNERLELLGDAVLDLIVAEYLY 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            ++ +A EG ++     +VS    ++++R++ +  F+ +S            SI AD  E
Sbjct: 63  KNYKNASEGTIAKLKAMIVSEPILAKISRQIGVGKFLMLSRGEVMSGGRNRESILADSFE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +++ A+Y+D  ++ A  F   + KQ    ++  +   D K+ LQE+   +F   P Y++ 
Sbjct: 123 AILGAVYMDSNLDDARNFTLSHIKQYIDHIEENEDILDFKSILQEYVQKEFRTVPTYELI 182

Query: 179 FRSGPDHDPRFTVVVEISG 197
              GPDH   F + V +  
Sbjct: 183 AERGPDHMKEFEIQVIVGN 201


>gi|297250746|ref|ZP_06864987.2| ribonuclease III [Neisseria polysaccharea ATCC 43768]
 gi|296838254|gb|EFH22192.1| ribonuclease III [Neisseria polysaccharea ATCC 43768]
          Length = 267

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 103/206 (50%), Gaps = 6/206 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++KR+GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F  
Sbjct: 39  HAAIQKRLGYAFRDISLLRQALTHRSC---HTKHNERFEFVGDSILNYTVARMLFDAFPK 95

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 96  LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 155

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +  D     A   V   +  R   +      +D KT LQE   A+    P+Y++  + G 
Sbjct: 156 VSFDADFNTAEKVVRHLFADRVRCADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGY 215

Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSK 208
            +D  F V  ++  L    +    S+
Sbjct: 216 ANDSMFVVSCDLGELGFVCRAKGTSR 241


>gi|296328081|ref|ZP_06870615.1| ribonuclease III [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|296154857|gb|EFG95640.1| ribonuclease III [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 234

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 56/199 (28%), Positives = 103/199 (51%), Gaps = 6/199 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60
               LE ++ Y F +R+LL+ AL H S+ +  +E    + ERLE LGD +L L+++  L+
Sbjct: 3   NLLDLEHKLNYYFNDRNLLKNALLHKSLGNERKEYKNQNNERLELLGDAVLDLIVAEYLY 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            ++ +A EG ++     +VS    ++++R++ +  F+ +S            SI AD  E
Sbjct: 63  KNYKNASEGTIAKLKAMIVSEPILAKISRQIGVGKFLMLSRGEVMSGGRNRESILADSFE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +++ A+Y+D  ++ A  F   + KQ    ++  +   D K+ LQE+   +F   P Y++ 
Sbjct: 123 AILGAVYIDSNLDEARVFALSHIKQYIDHIEENEDILDFKSILQEYVQKEFKTVPTYELV 182

Query: 179 FRSGPDHDPRFTVVVEISG 197
              GPDH   F + V +  
Sbjct: 183 AERGPDHMKEFEIQVIVGN 201


>gi|121634484|ref|YP_974729.1| ribonuclease III [Neisseria meningitidis FAM18]
 gi|120866190|emb|CAM09930.1| putative ribonuclease III [Neisseria meningitidis FAM18]
          Length = 267

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 104/206 (50%), Gaps = 6/206 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F  
Sbjct: 39  HAAIQKKLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 95

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 96  LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 155

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +  D     A   V   +  R  ++      +D KT LQE   A+    P+Y++  + G 
Sbjct: 156 VSFDADFNTAEKVVRHLFADRVRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGH 215

Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSK 208
            +D  F V  ++  L    +    S+
Sbjct: 216 ANDSMFVVSCDLGELGFVCRAKGTSR 241


>gi|298369788|ref|ZP_06981104.1| ribonuclease III [Neisseria sp. oral taxon 014 str. F0314]
 gi|298281248|gb|EFI22737.1| ribonuclease III [Neisseria sp. oral taxon 014 str. F0314]
          Length = 302

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 104/207 (50%), Gaps = 6/207 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           +  +++R+G+ F    LL++ALTH S +    ++ ER EF+GD IL   I+ +LF+ F  
Sbjct: 74  HQAIQRRLGHKFVRIELLQQALTHRSFN---AKNNERFEFVGDAILNYSIAKMLFDAFPK 130

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    +LV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 131 LTEGELSRLRANLVNEHVLAEIALEMNIGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 190

Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +  D G   A   V   + +R   +      +D KT LQE   A+    P+Y++  + G 
Sbjct: 191 VSFDAGFAAAEEVVRHLFAERVKRVDFKNQGKDNKTVLQEALQARHLPLPKYRIEEQVGG 250

Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSKR 209
             D RF V  ++  L    +    +++
Sbjct: 251 VKDSRFVVSCDLGELGFICRAQGTNRK 277


>gi|118617606|ref|YP_905938.1| ribonuclease III [Mycobacterium ulcerans Agy99]
 gi|118569716|gb|ABL04467.1| ribonuclease III Rnc [Mycobacterium ulcerans Agy99]
          Length = 243

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 64/194 (32%), Positives = 96/194 (49%), Gaps = 8/194 (4%)

Query: 21  SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            L+  ALTH S ++      + ERLEFLGD +LGL I+  LF+      EG+L+    S+
Sbjct: 19  ELVTLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDELFHRHPERSEGDLAKLRASV 78

Query: 79  VSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
           V+ +  + VAR L    L + + +         +  +SI AD +ESL+ A+YL  G+EVA
Sbjct: 79  VNTQALADVARHLSDHGLGAHMLLGRGEANTGGADKSSILADGMESLLGAIYLHHGMEVA 138

Query: 136 GTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
              + + +      +       D KT LQE   ++    P Y VT  +GPDH   FT VV
Sbjct: 139 REAILRIFGPLLDAAPTLGAGLDWKTSLQELTASRSLGAPSYAVTS-TGPDHHKEFTAVV 197

Query: 194 EISGLAPAQGMDCS 207
            ++      G+  S
Sbjct: 198 VVNNTEYGSGVGRS 211


>gi|326387678|ref|ZP_08209284.1| ribonuclease III [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207724|gb|EGD58535.1| ribonuclease III [Novosphingobium nitrogenifigens DSM 19370]
          Length = 233

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 84/221 (38%), Positives = 114/221 (51%), Gaps = 3/221 (1%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           +     + L    G+    + L  +ALTH S+  +    Y+RLEFLGDR+LGL ++  L 
Sbjct: 13  LDPASLAFLTAVFGHEPIRQDLWHEALTHGSLGEA--RDYQRLEFLGDRVLGLAVAEWLH 70

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
               SA EG+LS R N+LVS ETC+ VAR L +A  +R+    R D  +   +I  DV+E
Sbjct: 71  GD-SSAAEGKLSQRLNALVSRETCADVARTLGIAPHMRLGKQARDDGGADSDNILGDVME 129

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +LI AL+L+ G   A  FV + W          R+  K  LQEWA       P Y +  R
Sbjct: 130 ALIGALFLERGFPAARDFVRRAWAAPMAAGAGQRKHPKAALQEWAAGNKRKPPIYTLVAR 189

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            GPDH   FTV V + G+        SK+ AE  AA E +K
Sbjct: 190 EGPDHAATFTVSVTVKGVGEMTARGSSKQEAETSAAREFMK 230


>gi|241888745|ref|ZP_04776051.1| ribonuclease III [Gemella haemolysans ATCC 10379]
 gi|241864421|gb|EER68797.1| ribonuclease III [Gemella haemolysans ATCC 10379]
          Length = 237

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 65/223 (29%), Positives = 100/223 (44%), Gaps = 5/223 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
            + L +  G+        + + +HSS ++  +     +YERLEFLGD ++ L  S  LF 
Sbjct: 10  LNNLNEEYGFNLKFSENFKNSFSHSSYTNEKRIAKHLNYERLEFLGDAVVELTTSEFLFK 69

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F    EGEL+    S+V  +T  + A +L L   I +     K       ++ AD+ ES
Sbjct: 70  KFSELPEGELTKLRASIVCEKTLVKYALQLSLDKCIYLGKGEEKMGGRSRAALLADIFES 129

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTFR 180
              A+YL+  +EV  TF++                D KT LQE+         EY V   
Sbjct: 130 FTGAMYLESNLEVVKTFLNNTLFTEVQDLEYHSFVDYKTILQEYISKIKLGEIEYVVLDS 189

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           SGP H   FT  V I       G   +K+ +EQ++A + L++ 
Sbjct: 190 SGPSHSKTFTSAVLIGRKQYGSGTATTKKESEQLSAKQALEKL 232


>gi|85057423|ref|YP_456339.1| dsRNA-specific ribonuclease [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|123518419|sp|Q2NJY3|RNC_AYWBP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|84789528|gb|ABC65260.1| dsRNA-specific ribonuclease [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 237

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 66/225 (29%), Positives = 107/225 (47%), Gaps = 9/225 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLIST 57
           M  ++   L + +     N  L ++ALTHSS S+     QE  ERLEFLGD I+GLL++ 
Sbjct: 1   MKNIQI--LFQTLNIFPKNLVLYKQALTHSSYSNEQTPPQEDNERLEFLGDAIVGLLMAD 58

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            L++      EG ++ +    V  ++ +  A++++L +++ +     K+       I AD
Sbjct: 59  YLYSQ-SKEDEGIMTKKRAQAVCEKSLTIYAQKIELQNYLLLGKGE-KNKDFNAKGIMAD 116

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
             E+L  A+YLD G   A            L    +  D KT+LQE   ++   T +YK+
Sbjct: 117 TFEALFGAIYLDLGYLTAKKVFHNIVLPH-LAKTIYIIDFKTQLQEIVQSEKK-TIQYKI 174

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
               GP H   F   V +       G   +K++AEQ AA + L +
Sbjct: 175 VQEQGPAHSKNFVAEVYLEKNLLGTGEGSTKKSAEQKAAQQALSK 219


>gi|293410983|ref|ZP_06654559.1| LOW QUALITY PROTEIN: ribonuclease III [Escherichia coli B354]
 gi|291471451|gb|EFF13935.1| LOW QUALITY PROTEIN: ribonuclease III [Escherichia coli B354]
          Length = 189

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 59/173 (34%), Positives = 89/173 (51%), Gaps = 3/173 (1%)

Query: 41  ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
           ERLEFLGD IL  +I+  L++ F    EG++S    +LV   T +++ARE +L   +R+ 
Sbjct: 1   ERLEFLGDSILSYVIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLG 60

Query: 101 SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAK 158
               K       SI AD VE+LI  ++LD  I+     +  +++ R   +  G  ++D K
Sbjct: 61  PGELKSGGFRRESILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPK 120

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
           T LQE+   +    P Y V    G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 121 TRLQEYLQGRHLPLPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 173


>gi|15606266|ref|NP_213645.1| RNase III [Aquifex aeolicus VF5]
 gi|7531189|sp|O67082|RNC_AQUAE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|83753752|pdb|1YYK|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
           Complexed With Double-Stranded Rna At 2.5-Angstrom
           Resolution
 gi|83753753|pdb|1YYK|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
           Complexed With Double-Stranded Rna At 2.5-Angstrom
           Resolution
 gi|83753764|pdb|1YYW|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
           Complexed With Double Stranded Rna At 2.8-Angstrom
           Resolution
 gi|83753765|pdb|1YYW|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
           Complexed With Double Stranded Rna At 2.8-Angstrom
           Resolution
 gi|83753766|pdb|1YYW|C Chain C, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
           Complexed With Double Stranded Rna At 2.8-Angstrom
           Resolution
 gi|83753767|pdb|1YYW|D Chain D, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
           Complexed With Double Stranded Rna At 2.8-Angstrom
           Resolution
 gi|160877674|pdb|2NUE|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
           Complexed With Ds-Rna At 2.9-Angstrom Resolution
 gi|160877675|pdb|2NUE|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
           Complexed With Ds-Rna At 2.9-Angstrom Resolution
 gi|160877678|pdb|2NUF|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
           Complexed With Ds-Rna At 2.5-Angstrom Resolution
 gi|160877679|pdb|2NUF|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
           Complexed With Ds-Rna At 2.5-Angstrom Resolution
 gi|160877684|pdb|2NUG|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
           Complexed With Ds-Rna At 1.7-Angstrom Resolution
 gi|160877685|pdb|2NUG|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
           Complexed With Ds-Rna At 1.7-Angstrom Resolution
 gi|2983469|gb|AAC07049.1| RNase III [Aquifex aeolicus VF5]
          Length = 221

 Score =  208 bits (531), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 82/221 (37%), Positives = 119/221 (53%), Gaps = 14/221 (6%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              LEK++GY F ++SLLEKALTH S S   +E YE LEFLGD ++   I  LL  +  +
Sbjct: 4   LEQLEKKLGYTFKDKSLLEKALTHVSYSK--KEHYETLEFLGDALVNFFIVDLLVQYSPN 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
            +EG LS     L+S E  + +A++L+L  FIR+             +I  DV E+L AA
Sbjct: 62  KREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRG------KINETIIGDVFEALWAA 115

Query: 126 LYLDGGIEV--AGTFVDKYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +Y+D G +         K +K+    A+K G+ ++D KT LQE    ++   PEY++   
Sbjct: 116 VYIDSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISV 175

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            GP H  +F V  +I       G   SK+ AEQ AA E++K
Sbjct: 176 EGPHHKKKFIVEAKIKEYR-TLGEGKSKKEAEQRAAEELIK 215


>gi|296283699|ref|ZP_06861697.1| ribonuclease III [Citromicrobium bathyomarinum JL354]
          Length = 223

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 80/211 (37%), Positives = 116/211 (54%), Gaps = 2/211 (0%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           G+A  + +L  +ALTH S+       Y+RLEFLGDR+LGL I+  LF + +SA EG L+ 
Sbjct: 15  GFAARDEALWNEALTHGSLGEG--RDYQRLEFLGDRVLGLAIAEWLFENQNSASEGTLAQ 72

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           R N+LVS   C++VAR + +   +R+    R+D  +  ++I  DV+ESL+ A   + G E
Sbjct: 73  RLNALVSKGACAKVARSIGVPDHLRLGRQAREDGGAQSSNILGDVMESLLGAQLREDGFE 132

Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
            A   V   W+          +  K+ LQEWA       PEY +  RSGPDH  RFTV V
Sbjct: 133 SARALVRALWRDAVEGDAGRAKHPKSALQEWAAGNRRRPPEYALIDRSGPDHAARFTVRV 192

Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            +  +  A+    SK+ AE  AA   +++ G
Sbjct: 193 SVKNVGDAEATANSKQEAETAAAKAFMEQYG 223


>gi|319784504|ref|YP_004143980.1| ribonuclease III [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317170392|gb|ADV13930.1| ribonuclease III [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 251

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 85/198 (42%), Positives = 120/198 (60%), Gaps = 1/198 (0%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           ++ + GY F +  LLE ALTHSS   +   + +RLEFLGDR+LGL+++ +LF  F  A E
Sbjct: 15  VKAKTGYVFKDIRLLETALTHSSAVKAAT-NNQRLEFLGDRVLGLVVADMLFEKFPDAPE 73

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           GE++ RFN+LV A TCS++  E+ L   +R  S L+        +  AD VE+LIAA+Y+
Sbjct: 74  GEIAPRFNALVDARTCSEIGIEMQLEDLVRADSALKMRSRGSGGNYLADAVEALIAAVYV 133

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           DGGIE A  FV +YW+ R+        + K++LQEW      + PEY +  R GPDH P 
Sbjct: 134 DGGIEAARRFVLRYWEPRSHTVIAKPLNPKSDLQEWIAKTSDIRPEYVIDKREGPDHQPV 193

Query: 189 FTVVVEISGLAPAQGMDC 206
           FTV +++ G AP  G   
Sbjct: 194 FTVSLQVRGFAPISGTGG 211


>gi|161869625|ref|YP_001598793.1| ribonuclease III [Neisseria meningitidis 053442]
 gi|161595178|gb|ABX72838.1| ribonuclease III [Neisseria meningitidis 053442]
          Length = 310

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 102/206 (49%), Gaps = 6/206 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F  
Sbjct: 82  HAAIQKKLGYAFRDISLLRQALTHRSC---HTKHNERFEFVGDSILNYTVARMLFDAFPK 138

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+D+   + + +   K       SI AD +E++ AA
Sbjct: 139 LTEGELSRLRASLVNEGVLAEMAAEMDVGEGLYLGAGELKSGGFRRPSILADAMEAMFAA 198

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +  D     A   V   +  R   +      +D KT LQE   A+    P+Y++  + G 
Sbjct: 199 VSFDADFNTAEKVVRHLFADRVRCADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGH 258

Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSK 208
            +D  F +  ++  L         S+
Sbjct: 259 ANDSMFVISCDLGELGFVCYAKGTSR 284


>gi|329120775|ref|ZP_08249436.1| ribonuclease III [Neisseria bacilliformis ATCC BAA-1200]
 gi|327460145|gb|EGF06483.1| ribonuclease III [Neisseria bacilliformis ATCC BAA-1200]
          Length = 316

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 67/218 (30%), Positives = 107/218 (49%), Gaps = 7/218 (3%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            L+  IG+ FA+ +LL++ALTH S S  +    ER EF+GD IL   ++ +LF+ +    
Sbjct: 86  RLQAAIGHTFADPALLDRALTHRSFSSRH---NERFEFVGDAILNYTVARMLFDAYPQLP 142

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG LS    +LV+    ++ A  L++   + + +   K       SI AD +E++ AA+ 
Sbjct: 143 EGRLSRLRANLVNQTVLAETAAALNIGDALLLGAGELKSGGFRRPSILADAMEAVFAAVS 202

Query: 128 LDGGIEVAGTFVDKYWKQRALKSG---KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
            D     A   V + + +R        K  +DAKT LQE   A+    P+Y++  + G  
Sbjct: 203 FDADFAAAEAVVRRLFAERVANIDCGEKEAKDAKTRLQEALQAQRFALPKYRIDKQEGEG 262

Query: 185 HDPRFTVVVEISGLA-PAQGMDCSKRAAEQVAAAEVLK 221
               FTV  ++  L   +      +RAAEQ AA   L+
Sbjct: 263 SGAWFTVSCDLGELGFVSTAQAAGRRAAEQEAAKTALE 300


>gi|262068132|ref|ZP_06027744.1| ribonuclease III [Fusobacterium periodonticum ATCC 33693]
 gi|291378220|gb|EFE85738.1| ribonuclease III [Fusobacterium periodonticum ATCC 33693]
          Length = 234

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 59/198 (29%), Positives = 103/198 (52%), Gaps = 6/198 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60
               LE ++ Y F NR+LL+ AL H S+ +  +E    + ERLE LGD +L L+++  L+
Sbjct: 3   NLLDLEHKLNYYFNNRNLLKTALLHKSLGNEKKEYKNQNNERLELLGDAVLDLIVAEYLY 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            ++ SA EG ++     +VS    ++++R++ L  F+ +S            SI AD  E
Sbjct: 63  RNYKSASEGTIAKLKAMIVSEPILAKISRQIGLGKFLMLSKGEILSGGRNRESILADAFE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +++ A+Y+D  +E A +F   + +Q    ++  +   D K+ LQE+    F   P Y++ 
Sbjct: 123 AVLGAVYMDSNLEDARSFALGHIEQYITHIEEDEDILDFKSILQEYVQKNFRTVPIYELI 182

Query: 179 FRSGPDHDPRFTVVVEIS 196
              GPDH   F + V + 
Sbjct: 183 SEKGPDHMKEFEIQVVVG 200


>gi|322803055|gb|EFZ23143.1| hypothetical protein SINV_00854 [Solenopsis invicta]
          Length = 1447

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 105/228 (46%), Gaps = 14/228 (6%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  S   ++    S +RLEFLGD +L L++S  L+  
Sbjct: 990  KLTKFEESIGIEFTHIRLLARAFTDRSIGYTNLTLGSNQRLEFLGDTVLQLIVSEYLYKF 1049

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG LS+  +SLV+ +T + V  +L +  +    +          T  +AD++E+ 
Sbjct: 1050 FPEHHEGHLSLLRSSLVNNKTQAVVCDDLGMTQYALYGNP----KAELKTKDRADLLEAF 1105

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKF------GVTPE 174
            + ALY+D G++    F D  +  R       +   D K++LQ+               P 
Sbjct: 1106 LGALYVDKGLKYCHIFCDVCFFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPV 1165

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YKV    GP +   +TV V   G   A     S + AE  +A E L++
Sbjct: 1166 YKVIECKGPTNTRVYTVAVYFQGKRLATASGHSIQEAEMNSAKEALEK 1213



 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 6/137 (4%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
           T SSI+H      ERLEFLGD ++  L S  LF+ F   +EG L+    ++V  +  + +
Sbjct: 841 TESSIAH-----NERLEFLGDAVVEFLTSIHLFHMFPELEEGGLATYRAAIVQNQHLAVL 895

Query: 88  ARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA 147
           A++L+L  ++  +          +    A+  E+L+ +L+LDGGIEVA     +   +  
Sbjct: 896 AKKLNLEEYMLYAHGSDLCHDLELRHAMANCFEALMGSLFLDGGIEVADRVFGETLFKGE 955

Query: 148 LKSGKFRRDAKT-ELQE 163
               K   +     LQE
Sbjct: 956 EDLAKVWVNYPRHPLQE 972


>gi|332638233|ref|ZP_08417096.1| ribonuclease III [Weissella cibaria KACC 11862]
          Length = 232

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 60/227 (26%), Positives = 102/227 (44%), Gaps = 12/227 (5%)

Query: 6   YSTLEKRI----GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIST 57
           +  L+  +       F + SLLE+ALT ++  + +       Y+RLEFLGD ++    + 
Sbjct: 2   FKQLQAELALSYNIHFNDVSLLEEALTQANYINEHPNYTGNDYQRLEFLGDAVMQQSTAV 61

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF  +    EG L+    S+V     + ++REL L  ++++             S+  D
Sbjct: 62  YLFKRYPEWDEGRLTELRISMVQTRAFAALSRELHLDQYVQLGRGEELSGARNRDSLLED 121

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEY 175
           + E+ I AL+LD G +V   F+      + +  G + R  D K++LQE       V   Y
Sbjct: 122 LWEAFIGALFLDQGQDVVMHFLGDIMFNK-IDEGFYDRFVDYKSKLQEHLQRHGSVKITY 180

Query: 176 KVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
                    +++  FTV V ++    A G   S + AE+VAA    +
Sbjct: 181 TKLGERPVENNEQIFTVQVAVNDQVLATGEGKSTKEAEKVAARAAYQ 227


>gi|256384023|gb|ACU78593.1| ribonuclease III [Mycoplasma mycoides subsp. capri str. GM12]
 gi|256384855|gb|ACU79424.1| ribonuclease III [Mycoplasma mycoides subsp. capri str. GM12]
 gi|296455406|gb|ADH21641.1| ribonuclease III [synthetic Mycoplasma mycoides JCVI-syn1.0]
          Length = 232

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 113/226 (50%), Gaps = 6/226 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61
           +      ++      N  L  +ALTH+S ++ ++   SY+RLEFLGD IL + +S  LF 
Sbjct: 1   MNIKNFFEKYNIKINNEKLFNEALTHNSYANEHKLKYSYQRLEFLGDAILQMYVSRFLFF 60

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           ++    EGEL+    S V  ET  +VA++++L + +++             SI ADV E+
Sbjct: 61  NYSKLSEGELTRLRASTVREETLFRVAKDINLGALVKLGHGEYITKGYEKPSILADVFEA 120

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTF 179
           L AA+YLD   +   T++D+   +    S      +D K+ELQE   ++     +Y +  
Sbjct: 121 LTAAIYLDQKEDGLVTWLDQTLFKYIKDSNFINDTKDFKSELQELLQSEKRSDLKYIIEK 180

Query: 180 RS--GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                 ++   +TV V ++G     G   SK+ AEQ AA++ L + 
Sbjct: 181 EDFFANENKILYTVSVNLNGQKFGVGKGFSKQEAEQNAASDCLSKL 226


>gi|331703478|ref|YP_004400165.1| ribonuclease III [Mycoplasma mycoides subsp. capri LC str. 95010]
 gi|328802033|emb|CBW54187.1| Ribonuclease III [Mycoplasma mycoides subsp. capri LC str. 95010]
          Length = 232

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 113/226 (50%), Gaps = 6/226 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61
           +      ++      N  L  +ALTH+S ++ ++   SY+RLEFLGD IL + +S  LF 
Sbjct: 1   MNIKNFFEKYNIKINNEKLFNEALTHNSYANEHKLKYSYQRLEFLGDAILQMYVSRFLFF 60

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           ++    EGEL+    S V  ET  +VA++++L + +++             SI ADV E+
Sbjct: 61  NYSKLSEGELTRLRASTVREETLFRVAKDINLGALVKLGHGEYITKGYEKPSILADVFEA 120

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTF 179
           L AA+YLD   +   T++D+   +    S      +D K+ELQE   ++     +Y +  
Sbjct: 121 LTAAIYLDQKEDGLVTWLDQTLFKYIKDSNFINDTKDFKSELQELLQSEKRSDLKYIIEK 180

Query: 180 RS--GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                 ++   +TV V ++G     G   SK+ AEQ AA++ L + 
Sbjct: 181 EDFFANENKILYTVSVNLNGQKFGVGKGFSKQEAEQNAASDCLSKL 226


>gi|241895655|ref|ZP_04782951.1| dsRNA-specific ribonuclease [Weissella paramesenteroides ATCC
           33313]
 gi|241871022|gb|EER74773.1| dsRNA-specific ribonuclease [Weissella paramesenteroides ATCC
           33313]
          Length = 232

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 59/226 (26%), Positives = 107/226 (47%), Gaps = 10/226 (4%)

Query: 6   YSTLEKRI----GYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIST 57
           +  L+  +       F +  LLE+ALT ++  + +       Y+RLEFLGD ++    + 
Sbjct: 2   FKQLQADLATDHHIHFNDLKLLEEALTQANYINEHPGYKGGDYQRLEFLGDAVMQQSTAV 61

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF  F +  EG L+    S+V     + ++REL L  ++++             S+  D
Sbjct: 62  YLFKRFPNWDEGRLTELRISMVQTRAFAALSRELHLDRYVQLGRGEELSGARNRDSLLED 121

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEY- 175
           + E+ I AL+LD G EV   F+++    +  +       D K++LQE+      V   Y 
Sbjct: 122 LWEAFIGALFLDQGQEVVMNFLEEMMFVKIDEGFYDQFVDYKSKLQEYLQRHGTVKIAYT 181

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           K+  ++  +++  FT+ V + G   A G   S + AE++AA +  +
Sbjct: 182 KLDEQAISNNEQVFTIQVSVDGKPLATGEGKSTKDAEKMAARKAYQ 227


>gi|83319588|ref|YP_424465.1| ribonuclease III [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
 gi|123535692|sp|Q2SRZ8|RNC_MYCCT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|83283474|gb|ABC01406.1| ribonuclease III [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
          Length = 232

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 112/226 (49%), Gaps = 6/226 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61
           +      ++      ++ + ++ALTH+S ++  +   SY+RLEFLGD IL + +S  LF 
Sbjct: 1   MNIKNFFEKYNIKINDQQIYKEALTHNSYANERKLKYSYQRLEFLGDAILQMYVSKFLFF 60

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           H+    EGEL+   +S V  E+ S++A++++L   IR+             SI AD+ E+
Sbjct: 61  HYSKLGEGELTRLRSSTVREESLSRIAKDINLGQLIRLGHGELMTKGYEKQSILADIFEA 120

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           L AA+Y+D   +    ++++   +           +D K+ELQE   ++     +Y +  
Sbjct: 121 LTAAVYIDQNEDGLLIWLEQTLFKYMKDPTFINVTKDFKSELQELLQSEKRSDLKYIIEN 180

Query: 180 RSG--PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                 ++   +TV V + G     G   SK+ AEQ AA++ L + 
Sbjct: 181 EEFFVNENKTLYTVSVNLDGQKFGVGKGYSKQEAEQNAASDCLSKL 226


>gi|254455346|ref|ZP_05068775.1| ribonuclease III [Candidatus Pelagibacter sp. HTCC7211]
 gi|207082348|gb|EDZ59774.1| ribonuclease III [Candidatus Pelagibacter sp. HTCC7211]
          Length = 220

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 84/218 (38%), Positives = 122/218 (55%), Gaps = 3/218 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y +LEK+I   F N +LL ++LTH S  H+  ++ E++EFLGDR+LGL+I+  L   + 
Sbjct: 4   NYQSLEKKINIKFKNTNLLIQSLTHKS--HNSLKNNEKIEFLGDRVLGLVIAKKLLEIYP 61

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             KEG L  +F SLV+  TC ++A+ ++L  +I ++ +L          I +D  E+LI 
Sbjct: 62  DEKEGILDKKFASLVNKRTCLEIAKNINLEKYI-LTFNLNNKKIKIEDKIISDCCEALIG 120

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           ALYLD G+ +    +   WK    KS   + DAKT+LQE A   F   P YK+   +GP 
Sbjct: 121 ALYLDKGLNITEKIILDLWKNHIKKSVVTQIDAKTKLQELALKNFKKLPIYKLISNTGPR 180

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           H P F V V++        +  SK+ AEQ AA E LK 
Sbjct: 181 HKPLFKVGVKLPNTKYFIALGKSKKDAEQNAAIECLKN 218


>gi|183981795|ref|YP_001850086.1| ribonuclease III Rnc [Mycobacterium marinum M]
 gi|183175121|gb|ACC40231.1| ribonuclease III Rnc [Mycobacterium marinum M]
          Length = 241

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 64/194 (32%), Positives = 96/194 (49%), Gaps = 8/194 (4%)

Query: 21  SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            L+  ALTH S ++      + ERLEFLGD +LGL I+  LF+      EG+L+    S+
Sbjct: 17  ELVTLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDELFHRHPERSEGDLAKLRASV 76

Query: 79  VSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
           V+ +  + VAR L    L + + +         +  +SI AD +ESL+ A+YL  G+EVA
Sbjct: 77  VNTQALADVARHLSEHGLGAHMLLGRGEANTGGADKSSILADGMESLLGAIYLHHGMEVA 136

Query: 136 GTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
              + + +      +       D KT LQE   ++    P Y VT  +GPDH   FT VV
Sbjct: 137 REAILRIFGPLLDAAPTLGAGLDWKTSLQELTASRSLGAPSYAVTS-TGPDHHKEFTAVV 195

Query: 194 EISGLAPAQGMDCS 207
            ++      G+  S
Sbjct: 196 VVNNTEYGSGVGRS 209


>gi|313668838|ref|YP_004049122.1| ribonuclease III [Neisseria lactamica ST-640]
 gi|313006300|emb|CBN87763.1| putative ribonuclease III [Neisseria lactamica 020-06]
          Length = 239

 Score =  208 bits (529), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 105/206 (50%), Gaps = 6/206 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F  
Sbjct: 11  HAAIQKKLGYAFRDISLLRQALTHRSC---HTKHNERFEFVGDSILNYTVARMLFDAFPK 67

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 68  LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +  D     A   V   +  R  ++      +DAKT LQE   A+    P+Y++  + G 
Sbjct: 128 VSFDADFNTAEKVVRHLFADRVRRADFQNQAKDAKTALQEALQARRFALPKYRIEEQIGH 187

Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSK 208
            +D  F +  ++  L    +    S+
Sbjct: 188 ANDSMFVISCDLGELGFVCRAKGTSR 213


>gi|296535948|ref|ZP_06898097.1| ribonuclease III [Roseomonas cervicalis ATCC 49957]
 gi|296263721|gb|EFH10197.1| ribonuclease III [Roseomonas cervicalis ATCC 49957]
          Length = 234

 Score =  208 bits (529), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 74/202 (36%), Positives = 109/202 (53%), Gaps = 4/202 (1%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAK 67
            R+G+ F ++ LLE+ALTH S ++  ++   S ERLEFLGDR+L L+++  L   F + +
Sbjct: 16  ARLGHEFRDKGLLEQALTHRSAANPRRDMLDSNERLEFLGDRVLALVMAEWLSERFPAER 75

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG L  R + LV+AET ++V   + L + +RV     +       ++ AD  E+LI ALY
Sbjct: 76  EGALGKRLSVLVAAETLAKVGEAIGLPAMLRVPPAEGRTGLRGRATVIADATEALIGALY 135

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           LD G+EV   F+ + W +           AK+ LQE    +    PEY+    +GP H P
Sbjct: 136 LDAGLEVPRRFIRREWAEFVAADPTPPMSAKSRLQEHTLGRAEGLPEYRQVSVTGPSHQP 195

Query: 188 RFTVVVEISGLAPAQGMDCSKR 209
            F V V   G   A+G   SKR
Sbjct: 196 VFVVAVRAGGRE-AEGQGDSKR 216


>gi|309378209|emb|CBX23153.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 239

 Score =  208 bits (529), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 106/206 (51%), Gaps = 6/206 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F  
Sbjct: 11  HAAIQKKLGYAFRDISLLRQALTHRSC---HTKHNERFEFVGDSILNYTVARMLFDAFPK 67

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 68  LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +  D     A   V   + +R  ++      +DAKT LQE   A+    P+Y++  + G 
Sbjct: 128 VSFDADFNTAEKVVRHLFSERVKRADFQNQAKDAKTALQEALQARRFALPKYRIEEQIGH 187

Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSK 208
            +D  F +  ++  L    +    S+
Sbjct: 188 ANDSMFVISCDLGELGFVCRAKGTSR 213


>gi|330444350|ref|YP_004377336.1| ribonuclease III [Chlamydophila pecorum E58]
 gi|328807460|gb|AEB41633.1| ribonuclease III [Chlamydophila pecorum E58]
          Length = 231

 Score =  208 bits (529), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 65/224 (29%), Positives = 100/224 (44%), Gaps = 4/224 (1%)

Query: 1   MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLIS 56
           M+ +     +E ++ + F    LL  A TH S  +      E  ERLEFLGD +LGL+++
Sbjct: 1   MNPIVNVKEIESKLNFTFTQPQLLVTAFTHPSYRNESPVPIEDSERLEFLGDAVLGLIVT 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             LF  F + +EG LS    SLV A  CS  A  L +   + +    R        S QA
Sbjct: 61  EHLFLLFPNLEEGVLSTIRASLVDASACSGYAESLGVCENLLIGKGERLQNQRGKLSSQA 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           ++ E+++ A+YLDGG+  A          +         + K  LQ++        P+Y+
Sbjct: 121 NLFEAILGAIYLDGGLSPARQLTVPLLPSKEKLQPLMFGNPKNLLQQFTQKHLRTLPKYQ 180

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            T     +      V V I      +G+  SK+ AE++AA   L
Sbjct: 181 ATQYVSKEGVMSHHVQVFIHDELWGEGVAHSKKEAEKLAAQHAL 224


>gi|325203773|gb|ADY99226.1| ribonuclease III [Neisseria meningitidis M01-240355]
          Length = 239

 Score =  208 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 103/206 (50%), Gaps = 6/206 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F  
Sbjct: 11  HAAIQKKLGYAFRDISLLRQALTHRSC---HTKHNERFEFVGDSILNYTVARMLFDAFPK 67

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 68  LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +  D     A   V   +  R   +      +D KT LQE   A+    P+Y++  + G 
Sbjct: 128 VSFDADFNTAEKVVRHLFADRVRCADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGH 187

Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSK 208
            +D  F V  ++  L    +    S+
Sbjct: 188 ANDSMFVVSCDLGELGFVCRAKGTSR 213


>gi|325129784|gb|EGC52592.1| ribonuclease III [Neisseria meningitidis OX99.30304]
 gi|325133799|gb|EGC56455.1| ribonuclease III [Neisseria meningitidis M13399]
 gi|325135722|gb|EGC58334.1| ribonuclease III [Neisseria meningitidis M0579]
 gi|325141941|gb|EGC64381.1| ribonuclease III [Neisseria meningitidis 961-5945]
 gi|325143926|gb|EGC66236.1| ribonuclease III [Neisseria meningitidis M01-240013]
 gi|325197906|gb|ADY93362.1| ribonuclease III [Neisseria meningitidis G2136]
 gi|325202518|gb|ADY97972.1| ribonuclease III [Neisseria meningitidis M01-240149]
 gi|325206470|gb|ADZ01923.1| ribonuclease III [Neisseria meningitidis M04-240196]
 gi|325207732|gb|ADZ03184.1| ribonuclease III [Neisseria meningitidis NZ-05/33]
          Length = 239

 Score =  208 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 103/206 (50%), Gaps = 6/206 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++KR+GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F  
Sbjct: 11  HAAIQKRLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDTFPK 67

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 68  LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +  D     A   V   +  R   +      +D KT LQE   A+    P+Y++  + G 
Sbjct: 128 VSFDADFNTAEKVVRHLFADRVRCADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGH 187

Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSK 208
            +D  F V  ++  L    +    S+
Sbjct: 188 ANDSMFVVSCDLGELGFVCRAKGTSR 213


>gi|2500553|sp|Q53844|RNC_SPICI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|1143009|gb|AAA84999.1| orfb [Spiroplasma citri]
 gi|110005386|emb|CAK99709.1| putative ribonuclease III protein [Spiroplasma citri]
          Length = 248

 Score =  208 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 116/226 (51%), Gaps = 6/226 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLISTLLFN 61
           +      K+       R    +ALTH+S ++ +  SY  +R+EFLGD IL   IS  LF 
Sbjct: 13  IELKAFFKQYHVFIKERQYYLEALTHNSYANEHNLSYTYQRMEFLGDAILAKEISLYLFL 72

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F    EGE++   + +V   T +++ R ++ A F+ +     K        I AD+ ES
Sbjct: 73  SFPDKNEGEITNLRSKIVREGTLAELVRRMNWAPFLLLGKGEIKTKGYEKNRILADIYES 132

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179
           +IAALYLD G +V  TF++    +     G F +  D KTELQE+  A    T EYK+  
Sbjct: 133 MIAALYLDLGEDVVRTFINNTLIRMVSNPGFFDKIRDYKTELQEFLQAGDARTLEYKLIK 192

Query: 180 RSGP-DHDPR-FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            S P + +   +TVV EI G+   +G   + + AEQ+AA + L++ 
Sbjct: 193 ESQPLEGNRVLYTVVAEIGGIRYGEGCGYTHKEAEQLAARDALQKL 238


>gi|254442236|ref|ZP_05055712.1| ribonuclease III [Verrucomicrobiae bacterium DG1235]
 gi|198256544|gb|EDY80852.1| ribonuclease III [Verrucomicrobiae bacterium DG1235]
          Length = 263

 Score =  208 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 57/230 (24%), Positives = 105/230 (45%), Gaps = 10/230 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLIST 57
           +   +   LE ++GY F  + LL ++LTH S    +    ++ +RLEFLGD ++ L+++ 
Sbjct: 31  LPQAKVKRLENKLGYTFKTKGLLHQSLTHPSFLLNTKDQLKNNQRLEFLGDSVIQLVLTE 90

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            L+  F S +EG+L+   +     +  + +AREL L  ++ +    R    +   S   D
Sbjct: 91  KLYEKFPSLREGKLTSIRSGYARGDYMAGIARELKLGDYLILKPKDRNAGVAENDSALGD 150

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR----DAKTELQEWAH-AKFGVT 172
             E+LI A+YLD   E +   + + +    L +    +    + K +LQE          
Sbjct: 151 AFEALIGAIYLDSDFETSRKIILELY--NYLDTAPTAKGVIANPKGKLQELIQPVHGNNA 208

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             Y+   ++G  H+  F V V        +G   +K+ A + AA   + +
Sbjct: 209 LRYETIAQTGEAHEREFEVAVFCHDEQLGKGAGRTKKEAAEKAALIAIAK 258


>gi|83753776|pdb|1YZ9|A Chain A, Crystal Structure Of Rnase Iii Mutant E110q From Aquifex
           Aeolicus Complexed With Double Stranded Rna At 2.1-
           Angstrom Resolution
 gi|83753777|pdb|1YZ9|B Chain B, Crystal Structure Of Rnase Iii Mutant E110q From Aquifex
           Aeolicus Complexed With Double Stranded Rna At 2.1-
           Angstrom Resolution
          Length = 221

 Score =  207 bits (528), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 81/221 (36%), Positives = 119/221 (53%), Gaps = 14/221 (6%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              LEK++GY F ++SLLEKALTH S S   +E YE LEFLGD ++   I  LL  +  +
Sbjct: 4   LEQLEKKLGYTFKDKSLLEKALTHVSYSK--KEHYETLEFLGDALVNFFIVDLLVQYSPN 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
            +EG LS     L+S E  + +A++L+L  FIR+             +I  DV ++L AA
Sbjct: 62  KREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRG------KINETIIGDVFQALWAA 115

Query: 126 LYLDGGIEV--AGTFVDKYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +Y+D G +         K +K+    A+K G+ ++D KT LQE    ++   PEY++   
Sbjct: 116 VYIDSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISV 175

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            GP H  +F V  +I       G   SK+ AEQ AA E++K
Sbjct: 176 EGPHHKKKFIVEAKIKEYR-TLGEGKSKKEAEQRAAEELIK 215


>gi|116671047|ref|YP_831980.1| ribonuclease III [Arthrobacter sp. FB24]
 gi|116611156|gb|ABK03880.1| RNAse III [Arthrobacter sp. FB24]
          Length = 240

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 65/207 (31%), Positives = 97/207 (46%), Gaps = 6/207 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
             L KR+G +  +   L  ALTH S ++      + ERLEFLGD ILG  ++  L+    
Sbjct: 6   EELLKRLGVSI-DAGTLRLALTHRSYAYENGGIPTNERLEFLGDSILGFSVTDALYRDNP 64

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EG+L+ R +++VS    + + R L +  +I +    +        SI AD +E+LI 
Sbjct: 65  ALPEGDLAKRRSAVVSTRALAGIGRSLGIGEYIYLGQGEKLTDGKNKASILADTMEALIG 124

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A Y+   IE A   V +        +       D KT +QE A ++   +  Y V   SG
Sbjct: 125 ATYVSNDIETARQLVMRLIGPLLQDAAALGAGTDWKTSIQELAASRQLGSIYYAVEG-SG 183

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209
           PDH   F  V+ I G    QG   SK+
Sbjct: 184 PDHARTFVAVLRIGGTDYGQGAGRSKK 210


>gi|307208065|gb|EFN85596.1| Ribonuclease 3 [Harpegnathos saltator]
          Length = 1328

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 105/228 (46%), Gaps = 14/228 (6%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  S   ++    S +RLEFLGD +L L++S  L+  
Sbjct: 1041 KLTKFEESIGIKFTHIRLLARAFTDRSIGYTNLTLGSNQRLEFLGDTVLQLIVSEYLYKF 1100

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG LS+  +SLV+ +T + V  +L +  +    +          T  +AD++E+ 
Sbjct: 1101 FPEHHEGHLSLLRSSLVNNKTQAVVCDDLGMTQYALYGNP----KAELKTKDRADLLEAF 1156

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKF------GVTPE 174
            + ALY+D G +    F D  +  R       +   D K++LQ+               P 
Sbjct: 1157 LGALYVDKGFKYCHVFCDVCFFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPV 1216

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YKV    GP +   +TV V   G   A+    S + AE  +A E L++
Sbjct: 1217 YKVIECKGPTNTRVYTVAVYFQGKRLAKASGHSIQEAEMNSAKEALEK 1264



 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 6/137 (4%)

Query: 28   THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
            T SSI+H      ERLEFLGD ++  L S  LF+ F   +EG L+    ++V  +  + +
Sbjct: 892  TESSIAH-----NERLEFLGDAVVEFLTSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVL 946

Query: 88   ARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA 147
            A++L+L  ++  +          +    A+  E+L+ +L+LDGGIEVA     +   +  
Sbjct: 947  AKKLNLEEYMLYAHGSDLCHDLELRHAMANCFEALMGSLFLDGGIEVADRVFGETLFKDE 1006

Query: 148  LKSGKFRRDAKT-ELQE 163
                K   +     LQE
Sbjct: 1007 EDLAKVWVNYPRHPLQE 1023


>gi|268594306|ref|ZP_06128473.1| ribonuclease III [Neisseria gonorrhoeae 35/02]
 gi|268596300|ref|ZP_06130467.1| ribonuclease III [Neisseria gonorrhoeae FA19]
 gi|268603082|ref|ZP_06137249.1| ribonuclease III [Neisseria gonorrhoeae PID1]
 gi|268681562|ref|ZP_06148424.1| ribonuclease III [Neisseria gonorrhoeae PID332]
 gi|268683791|ref|ZP_06150653.1| ribonuclease III [Neisseria gonorrhoeae SK-92-679]
 gi|268686031|ref|ZP_06152893.1| ribonuclease III [Neisseria gonorrhoeae SK-93-1035]
 gi|268547695|gb|EEZ43113.1| ribonuclease III [Neisseria gonorrhoeae 35/02]
 gi|268550088|gb|EEZ45107.1| ribonuclease III [Neisseria gonorrhoeae FA19]
 gi|268587213|gb|EEZ51889.1| ribonuclease III [Neisseria gonorrhoeae PID1]
 gi|268621846|gb|EEZ54246.1| ribonuclease III [Neisseria gonorrhoeae PID332]
 gi|268624075|gb|EEZ56475.1| ribonuclease III [Neisseria gonorrhoeae SK-92-679]
 gi|268626315|gb|EEZ58715.1| ribonuclease III [Neisseria gonorrhoeae SK-93-1035]
 gi|317163728|gb|ADV07269.1| ribonuclease III [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 267

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 105/206 (50%), Gaps = 6/206 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F  
Sbjct: 39  HTAIQKKLGYAFRDMSLLRRALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 95

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 96  LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 155

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +  D     A   V   + +R  ++      +D KT LQE   A+    P+Y++  + G 
Sbjct: 156 VSFDADFNTAEKVVRHLFAERVRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGH 215

Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSK 208
            +D  F +  ++  L    +    S+
Sbjct: 216 ANDSMFVISCDLGELGFVCRAKGTSR 241


>gi|47168737|pdb|1RC7|A Chain A, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex
           Aeolicus Complexed With Ds-Rna At 2.15 Angstrom
           Resolution
          Length = 220

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 81/221 (36%), Positives = 119/221 (53%), Gaps = 14/221 (6%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              LEK++GY F ++SLLEKALTH S S   +E YE LEFLGD ++   I  LL  +  +
Sbjct: 4   LEQLEKKLGYTFKDKSLLEKALTHVSYSK--KEHYETLEFLGDALVNFFIVDLLVQYSPN 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
            +EG LS     L+S E  + +A++L+L  FIR+             +I  DV ++L AA
Sbjct: 62  KREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRG------KINETIIGDVFKALWAA 115

Query: 126 LYLDGGIEV--AGTFVDKYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +Y+D G +         K +K+    A+K G+ ++D KT LQE    ++   PEY++   
Sbjct: 116 VYIDSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISV 175

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            GP H  +F V  +I       G   SK+ AEQ AA E++K
Sbjct: 176 EGPHHKKKFIVEAKIKEYR-TLGEGKSKKEAEQRAAEELIK 215


>gi|85373795|ref|YP_457857.1| ribonuclease III [Erythrobacter litoralis HTCC2594]
 gi|84786878|gb|ABC63060.1| ribonuclease III [Erythrobacter litoralis HTCC2594]
          Length = 223

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 82/226 (36%), Positives = 117/226 (51%), Gaps = 5/226 (2%)

Query: 1   MSALRYSTLE--KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58
           M+ L   TL+     G+A  +  L  +ALTH S        Y+RLEFLGDR+LGL IS  
Sbjct: 1   MTILAPETLQWLADTGFAVEDDELWLEALTHGSTGAE--RDYQRLEFLGDRVLGLAISDH 58

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF       EG L+ R N+LVS   C+++ R + L+  + +    R+D  +  T+I  DV
Sbjct: 59  LFRKVGG-SEGALAQRLNALVSKGACAKIGRRIGLSDHLVLGKQAREDGAAQSTNILGDV 117

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           VE+L+ A YLD G       V   W +         +  K+ LQEWA       P+Y++ 
Sbjct: 118 VEALLGANYLDAGFGPTCALVHLLWDEDLNGMAGRSKHPKSALQEWAAGNQRRPPQYELV 177

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            RSGPDH   FTV VE+  +  A+    SK+ AE  AA + +++ G
Sbjct: 178 DRSGPDHAAIFTVRVEVHKVGAAEATASSKQEAETEAAKKFMEQFG 223


>gi|42519393|ref|NP_965323.1| ribonuclease III [Lactobacillus johnsonii NCC 533]
 gi|81667674|sp|Q74IP8|RNC_LACJO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|41583681|gb|AAS09289.1| ribonuclease III [Lactobacillus johnsonii NCC 533]
 gi|329667082|gb|AEB93030.1| ribonuclease III [Lactobacillus johnsonii DPC 6026]
          Length = 226

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 66/213 (30%), Positives = 102/213 (47%), Gaps = 6/213 (2%)

Query: 1   MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLIST 57
           M ++ +   L+K+ G  F N  LLE A THSS ++ +  ++ YE+LEFLGD +L L +S 
Sbjct: 1   MVSVAFKQNLKKKYGIKFNNEKLLEDAFTHSSYANEHPGRKDYEKLEFLGDAVLELAVSD 60

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            L+ HF    EGEL+   +++V  E  S+ A E      I +     K       ++  D
Sbjct: 61  YLYRHFPRLNEGELTRMRSNIVRTEGFSEFAIECGFPEEINLGKGEEKAGARKRKTLLED 120

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYK 176
           V E+   AL+LD G+     F+         +      RD KTELQE       V  EY+
Sbjct: 121 VFEAFNGALFLDQGMPAVQHFLHLTVYPLIAEGDFNASRDYKTELQERLQVNGPVKIEYQ 180

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           V      +  P F V + ++G   ++G   +K+
Sbjct: 181 VISED--ESKPSFKVQLLVNGEKVSEGQGRNKK 211


>gi|325131860|gb|EGC54560.1| ribonuclease III [Neisseria meningitidis M6190]
 gi|325137910|gb|EGC60485.1| ribonuclease III [Neisseria meningitidis ES14902]
          Length = 239

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 104/206 (50%), Gaps = 6/206 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F  
Sbjct: 11  HAAIQKKLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 67

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 68  LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +  D     A   V   +  R  ++      +D KT LQE   A+    P+Y++  + G 
Sbjct: 128 VSFDADFNTAEKVVRHLFADRVRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGH 187

Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSK 208
            +D  F V  ++  L    +    S+
Sbjct: 188 ANDSMFVVSCDLGELGFVCRAKGTSR 213


>gi|289209108|ref|YP_003461174.1| ribonuclease III [Thioalkalivibrio sp. K90mix]
 gi|288944739|gb|ADC72438.1| ribonuclease III [Thioalkalivibrio sp. K90mix]
          Length = 236

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 67/187 (35%), Positives = 93/187 (49%), Gaps = 6/187 (3%)

Query: 24  EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83
            +ALTH S       + ERLEFLGD +LGL+I+  L+     A EG+L+    +LV+ E+
Sbjct: 30  RQALTHRSAG---GRNNERLEFLGDAVLGLVIADALYEQLPDAPEGDLTRLRAALVNRES 86

Query: 84  CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143
            + +ARE  L   + +    RK       SI AD VE+LI   Y + G++ A  F    +
Sbjct: 87  LAALARESGLEGTLNLGQGERKSGGQRRDSILADAVEALIGVTYREAGMQAARDFTLALY 146

Query: 144 KQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201
            +R   L S +  +D KT LQE    +    P Y+V    GPDH  RFTV V +      
Sbjct: 147 AERLGNLPSAESLKDPKTRLQEQLQGRNAELPVYEVLEVVGPDHQRRFTVSVHLPTQGWG 206

Query: 202 -QGMDCS 207
            QG   S
Sbjct: 207 QQGEGSS 213


>gi|83753758|pdb|1YYO|A Chain A, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex
           Aeolicus Complexed With Double-Stranded Rna At 2.9-
           Angstrom Resolution
 gi|83753759|pdb|1YYO|B Chain B, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex
           Aeolicus Complexed With Double-Stranded Rna At 2.9-
           Angstrom Resolution
          Length = 221

 Score =  206 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 81/221 (36%), Positives = 119/221 (53%), Gaps = 14/221 (6%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              LEK++GY F ++SLLEKALTH S S   +E YE LEFLGD ++   I  LL  +  +
Sbjct: 4   LEQLEKKLGYTFKDKSLLEKALTHVSYSK--KEHYETLEFLGDALVNFFIVDLLVQYSPN 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
            +EG LS     L+S E  + +A++L+L  FIR+             +I  DV ++L AA
Sbjct: 62  KREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRG------KINETIIGDVFKALWAA 115

Query: 126 LYLDGGIEV--AGTFVDKYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +Y+D G +         K +K+    A+K G+ ++D KT LQE    ++   PEY++   
Sbjct: 116 VYIDSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISV 175

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            GP H  +F V  +I       G   SK+ AEQ AA E++K
Sbjct: 176 EGPHHKKKFIVEAKIKEYR-TLGEGKSKKEAEQRAAEELIK 215


>gi|268319230|ref|YP_003292886.1| ribonuclease III [Lactobacillus johnsonii FI9785]
 gi|262397605|emb|CAX66619.1| ribonuclease III [Lactobacillus johnsonii FI9785]
          Length = 226

 Score =  206 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 66/213 (30%), Positives = 102/213 (47%), Gaps = 6/213 (2%)

Query: 1   MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLIST 57
           M ++ +   L+K+ G  F N  LLE A THSS ++ +  ++ YE+LEFLGD +L L +S 
Sbjct: 1   MVSVAFKQNLKKKYGIKFNNEKLLENAFTHSSYANEHPGRKDYEKLEFLGDAVLELAVSD 60

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            L+ HF    EGEL+   +++V  E  S+ A E      I +     K       ++  D
Sbjct: 61  YLYRHFPRLNEGELTRMRSNIVRTEGFSEFAIECGFPEEIDLGKGEEKAGARKRKTLLED 120

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYK 176
           V E+   AL+LD G+     F+         +      RD KTELQE       V  EY+
Sbjct: 121 VFEAFNGALFLDQGMPAVQHFLHLTVYPLIAEGDFNASRDYKTELQERLQVNGPVKIEYQ 180

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           V      +  P F V + ++G   ++G   +K+
Sbjct: 181 VISED--ESKPSFKVQLLVNGEKVSEGQGRNKK 211


>gi|90109239|pdb|2EZ6|A Chain A, Crystal Structure Of Aquifex Aeolicus Rnase Iii (D44n)
           Complexed With Product Of Double-Stranded Rna Processing
 gi|90109240|pdb|2EZ6|B Chain B, Crystal Structure Of Aquifex Aeolicus Rnase Iii (D44n)
           Complexed With Product Of Double-Stranded Rna Processing
          Length = 221

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 81/221 (36%), Positives = 119/221 (53%), Gaps = 14/221 (6%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              LEK++GY F ++SLLEKALTH S S   +E YE LEFLG+ ++   I  LL  +  +
Sbjct: 4   LEQLEKKLGYTFKDKSLLEKALTHVSYSK--KEHYETLEFLGNALVNFFIVDLLVQYSPN 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
            +EG LS     L+S E  + +A++L+L  FIR+             +I  DV E+L AA
Sbjct: 62  KREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRG------KINETIIGDVFEALWAA 115

Query: 126 LYLDGGIEV--AGTFVDKYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +Y+D G +         K +K+    A+K G+ ++D KT LQE    ++   PEY++   
Sbjct: 116 VYIDSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISV 175

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            GP H  +F V  +I       G   SK+ AEQ AA E++K
Sbjct: 176 EGPHHKKKFIVEAKIKEYR-TLGEGKSKKEAEQRAAEELIK 215


>gi|257457873|ref|ZP_05623032.1| ribonuclease III [Treponema vincentii ATCC 35580]
 gi|257444586|gb|EEV19670.1| ribonuclease III [Treponema vincentii ATCC 35580]
          Length = 245

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 64/200 (32%), Positives = 104/200 (52%), Gaps = 6/200 (3%)

Query: 16  AFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            F N SLL+ A  H S S+ + +   + ERLEFLGD +LG++++  L+       EG+L+
Sbjct: 26  KFKNISLLDIAFHHRSFSNEHSDFPINNERLEFLGDSVLGMIVAAELYLAHPEKPEGDLA 85

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
               ++VS ++   +A  L++  ++ +             ++ AD +E+LI ALYLD G 
Sbjct: 86  KIKAAVVSEDSLFPIALNLNIDKYLMLGHGEEVSGGRKKKALLADALEALIGALYLDSGF 145

Query: 133 EVAGTFVDKYWKQRA--LKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
           +V   FV K  + +   ++  K R RD K+ LQE+   K+ + P+Y +    GPDHD  F
Sbjct: 146 KVVQRFVLKIIEPQMQLVEQNKHRYRDYKSLLQEYVQKKYRIIPKYLLVETHGPDHDRVF 205

Query: 190 TVVVEISGLAPAQGMDCSKR 209
            V V I        +  SK+
Sbjct: 206 QVKVVIKDKEYEPALGKSKK 225


>gi|86742282|ref|YP_482682.1| ribonuclease III [Frankia sp. CcI3]
 gi|86569144|gb|ABD12953.1| RNAse III [Frankia sp. CcI3]
          Length = 270

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 64/198 (32%), Positives = 99/198 (50%), Gaps = 8/198 (4%)

Query: 19  NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           +  LL++ALTH S ++      + ERLEFLGD +LGL+++  LF       EG+L+ +  
Sbjct: 23  DPELLDRALTHRSYAYEKGGLPTNERLEFLGDAVLGLVVTAALFIRHPDLPEGQLAKQRA 82

Query: 77  SLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           S+V+    + VAR +    L  ++ +             SI AD +E++I A+YL  G++
Sbjct: 83  SVVNMRALADVARGIGPTGLGPYLLLGRGEETTGGRDKASILADTLEAIIGAVYLSSGLD 142

Query: 134 VAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
           VA  FV + +     ++       D KT LQE         PEY +   +GPDH  RFT 
Sbjct: 143 VASGFVHRLFDPLLDEAAGRGAGLDWKTSLQEQTAVLALGPPEY-IVEEAGPDHAKRFTA 201

Query: 192 VVEISGLAPAQGMDCSKR 209
              I+G    +G   SK+
Sbjct: 202 YARIAGEPLGEGEGGSKK 219


>gi|124516572|gb|EAY58080.1| ribonuclease III [Leptospirillum rubarum]
          Length = 377

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 73/250 (29%), Positives = 113/250 (45%), Gaps = 34/250 (13%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ-----ESYERLEFLGDRILGLLISTLLFN 61
             L + +G  F     +E+ALTH S SH         +YERLEFLGDR++GL++S  L N
Sbjct: 19  EHLIRILGLPFKPTMRIEEALTHRSASHERGRKTPIPNYERLEFLGDRVIGLIVSEYLLN 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + SA EG++   F+ +VS +T + +AR +DL S++ +            +S+ AD  ES
Sbjct: 79  TWPSASEGDIGQIFSGIVSTQTLASIARRMDLGSYMILGKGSHSSGDRENSSLLADTFES 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALK-----------------------------SGK 152
           L AA+YL+ G+E     +  ++ Q  ++                                
Sbjct: 139 LAAAIYLEYGLETCRQVLIPWFTQPLIEIVQKIENLREIRDSSSGPGSSVIATQPAPPRA 198

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
              + K  LQ+W  +K    P Y+V    GP H  RF + V + G    +    +KR A 
Sbjct: 199 GSLNYKLLLQKWCQSKAEELPVYQVLEEIGPAHQRRFRLGVFLKGKQLGEAEGTTKRGAS 258

Query: 213 QVAAAEVLKR 222
             AA    +R
Sbjct: 259 VHAAKNAWER 268


>gi|42561014|ref|NP_975465.1| ribonuclease III [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|81400621|sp|Q6MTC9|RNC_MYCMS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|42492511|emb|CAE77107.1| ribonuclease III [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|301321343|gb|ADK69986.1| ribonuclease III [Mycoplasma mycoides subsp. mycoides SC str.
           Gladysdale]
          Length = 232

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 112/226 (49%), Gaps = 6/226 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61
           +      ++      N  L  +ALTH+S ++ ++   SY+RLEFLGD IL + +S  LF 
Sbjct: 1   MNIKNFFEKYNIKINNEKLFNEALTHNSYANEHKLKYSYQRLEFLGDAILQMYVSRFLFF 60

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           ++    EGEL+    S V  ET  +VA++++L + +++             SI ADV E+
Sbjct: 61  NYSKLSEGELTRLRASTVREETLFRVAKDINLGALVKLGHGEYITKGYEKPSILADVFEA 120

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTF 179
           L AA+YLD   +   T++ +   +    S      +D K+ELQE   ++     +Y +  
Sbjct: 121 LTAAIYLDQKEDGLVTWLGQTLFKYIKDSNFINDTKDFKSELQELLQSEKRSDLKYIIEK 180

Query: 180 RS--GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                 ++   +TV V ++G     G   SK+ AEQ AA++ L + 
Sbjct: 181 EDFFANENKILYTVSVNLNGQKFGVGKGFSKQEAEQNAASDCLSKL 226


>gi|332017989|gb|EGI58626.1| Ribonuclease 3 [Acromyrmex echinatior]
          Length = 1326

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 106/228 (46%), Gaps = 14/228 (6%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  S   ++    S +RLEFLGD +L L++S  L+ +
Sbjct: 1036 KLTKFEESIGIEFTHIRLLARAFTDRSIGYTNLTLGSNQRLEFLGDTVLQLIVSEYLYKY 1095

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG LS+  +SLV+ +T + V  +L +  +    +          T  +AD++E+ 
Sbjct: 1096 FPEHHEGHLSLLRSSLVNNKTQAVVCDDLGMTQYALYGNP----KAELKTKDRADLLEAF 1151

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKF------GVTPE 174
            + ALY+D G++    F D  +  R       +   D K++LQ+               P 
Sbjct: 1152 LGALYVDKGLKYCHVFCDVCFFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPV 1211

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YKV    GP +   +TV V   G   A     S + AE  +A E L++
Sbjct: 1212 YKVIECKGPTNTRVYTVAVYFQGKRLATASGHSIQEAEMNSAKEALEK 1259



 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 6/137 (4%)

Query: 28   THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
            T SSI+H      ERLEFLGD ++  L S  LF+ F   +EG L+    ++V  +  + +
Sbjct: 887  TESSIAH-----NERLEFLGDAVVEFLTSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVL 941

Query: 88   ARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA 147
            A++L+L  ++  +          +    A+  E+L+ +L+LDGGIEVA     +   +  
Sbjct: 942  AKKLNLEEYMLYAHGSDLCHDLELRHAMANCFEALMGSLFLDGGIEVADRVFGETLFKGE 1001

Query: 148  LKSGKFRRDAKT-ELQE 163
                K   +     LQE
Sbjct: 1002 EDLAKVWVNYPRHPLQE 1018


>gi|94970880|ref|YP_592928.1| ribonuclease III [Candidatus Koribacter versatilis Ellin345]
 gi|94552930|gb|ABF42854.1| RNAse III [Candidatus Koribacter versatilis Ellin345]
          Length = 258

 Score =  206 bits (524), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 77/232 (33%), Positives = 110/232 (47%), Gaps = 23/232 (9%)

Query: 1   MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---------SYERLEFLGDRI 50
           M+  R  + LEK + + F  + LL +ALTHSS +   ++           E+LEF+GD +
Sbjct: 1   MTKSRDIAALEKALDHKFEEQELLVRALTHSSYAREQRDHIHDNSVPNDNEQLEFIGDSV 60

Query: 51  LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110
           L  + S  L   F   +EGELS     LVSA    Q AR LDL  F+R+     +     
Sbjct: 61  LAFVTSQELVKKFPHFQEGELSKLRAYLVSARHLIQTARNLDLGKFLRLGRGEERSGGRS 120

Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-------DAKTELQE 163
            ++I  D +E++IAA+YLDGG+ VA  F+ +   +  LK  +          D K+ LQE
Sbjct: 121 KSAILVDALEAVIAAIYLDGGLRVAQKFILREIVRPELKRMETEHGSALPVTDYKSALQE 180

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI--SGLA----PAQGMDCSKR 209
            AHA       Y V    GP+H   FTV   I   G       A+    +K+
Sbjct: 181 QAHAAGRKRIVYAVVKEEGPEHRKTFTVEARILSDGNEAPEFVARAEGPTKK 232


>gi|257068990|ref|YP_003155245.1| RNAse III [Brachybacterium faecium DSM 4810]
 gi|256559808|gb|ACU85655.1| RNAse III [Brachybacterium faecium DSM 4810]
          Length = 250

 Score =  206 bits (524), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 99/206 (48%), Gaps = 6/206 (2%)

Query: 18  ANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
            +  LLE +LTH S S+        ERLEFLGD +L L ++  L+    +  EG+L+ R 
Sbjct: 31  QDSGLLELSLTHRSYSYENDGLPHNERLEFLGDAVLQLAVTEHLYAAHPTLPEGDLARRR 90

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
            + VS    + +A +LDL +++R+             SI AD  E++I A++L  G +V+
Sbjct: 91  AATVSTRALAVIASKLDLGAYVRLGRGEDLTGGRAKASILADTTEAVIGAVHLALGQDVS 150

Query: 136 GTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
             FV    +             D K+ LQE A A+ G    Y +   SG +H   +T  V
Sbjct: 151 RRFVLDLLRPLLDSDEFLEAGYDFKSRLQEIAAAE-GENVTYAL-SESGLEHQKVYTATV 208

Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEV 219
            + G+  A+G   SK+ AE  AA   
Sbjct: 209 TVPGIVTARGDGASKKDAELAAAQNA 234


>gi|309263205|ref|XP_001473806.2| PREDICTED: ribonuclease 3-like [Mus musculus]
          Length = 1343

 Score =  206 bits (524), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1075 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1134

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1135 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1193

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R  +    +   D K++LQ+         K    P Y
Sbjct: 1194 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1253

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            K     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1254 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1300



 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 15/119 (12%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLAS-- 95
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A+   L    
Sbjct: 923  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAK---LGESC 979

Query: 96   ------FIRVSSDLRKDVCSFM----TSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
                      S D R  VC F+     S+        + A+YL+G +E A     +   
Sbjct: 980  AGESGVMDHDSPDHRGVVCFFVLVCYLSLLLTPASFHLGAVYLEGSLEEAKQLFGRLLF 1038


>gi|116629437|ref|YP_814609.1| dsRNA-specific ribonuclease [Lactobacillus gasseri ATCC 33323]
 gi|238852587|ref|ZP_04642997.1| ribonuclease III [Lactobacillus gasseri 202-4]
 gi|282850853|ref|ZP_06260227.1| ribonuclease III [Lactobacillus gasseri 224-1]
 gi|311110915|ref|ZP_07712312.1| ribonuclease III [Lactobacillus gasseri MV-22]
 gi|116095019|gb|ABJ60171.1| RNAse III [Lactobacillus gasseri ATCC 33323]
 gi|238834733|gb|EEQ26960.1| ribonuclease III [Lactobacillus gasseri 202-4]
 gi|282557805|gb|EFB63393.1| ribonuclease III [Lactobacillus gasseri 224-1]
 gi|311066069|gb|EFQ46409.1| ribonuclease III [Lactobacillus gasseri MV-22]
          Length = 226

 Score =  206 bits (524), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 64/213 (30%), Positives = 103/213 (48%), Gaps = 6/213 (2%)

Query: 1   MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLIST 57
           M ++ +   L+++ G  F N +LLE A THSS ++ +  ++ YE+LEFLGD +L L +S 
Sbjct: 1   MVSVAFKKNLKEKYGIKFNNENLLEDAFTHSSYANEHPGRKDYEKLEFLGDAVLELAVSD 60

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            L+ HF    EGEL+   +++V  E  S+ A E    + I +     K       ++  D
Sbjct: 61  YLYRHFPRLNEGELTRMRSNIVRTEGFSEFAIECGFPAEINLGKGEEKAGARKRKTLLED 120

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYK 176
           V E+   AL+LD G+     F+         +      RD KTELQE       V  EY+
Sbjct: 121 VFEAFNGALFLDQGMPAVQHFLHLTVYPLIAEGDFNASRDYKTELQERLQVNGPVKIEYQ 180

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           V      +  P F V + ++    ++G   +K+
Sbjct: 181 VIAED--ESKPSFKVQLLVNDKKISEGQGRNKK 211


>gi|304388061|ref|ZP_07370190.1| ribonuclease III [Neisseria meningitidis ATCC 13091]
 gi|304337918|gb|EFM04058.1| ribonuclease III [Neisseria meningitidis ATCC 13091]
          Length = 267

 Score =  206 bits (524), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 6/206 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F  
Sbjct: 39  HAAIQKKLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 95

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 96  LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 155

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +  D     A   V   +  R  ++      +D KT LQE   A+    P+Y++  + G 
Sbjct: 156 VSFDADFNTAEKVVRHLFADRVRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGY 215

Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSK 208
            +D  F +  ++  L    +    S+
Sbjct: 216 ANDSMFVISCDLGELGFVCRAKGTSR 241


>gi|103486701|ref|YP_616262.1| ribonuclease III [Sphingopyxis alaskensis RB2256]
 gi|123253313|sp|Q1GTU3|RNC_SPHAL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|98976778|gb|ABF52929.1| RNAse III [Sphingopyxis alaskensis RB2256]
          Length = 226

 Score =  206 bits (524), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 83/208 (39%), Positives = 116/208 (55%), Gaps = 3/208 (1%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
             L    L   IG    + +L + ALTH S   + +  Y+RLEFLGDR+LGL++++ L+ 
Sbjct: 3   DPLNTEALADIIGCIPDDLTLYDLALTHGS---TGRADYQRLEFLGDRVLGLVLASELYT 59

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F +A EGE+S R + L S  TC+ +A+ LDL + IR  +  R D      +I AD +E+
Sbjct: 60  RFPAASEGEMSSRLHVLASGATCAAIAQRLDLPALIRFGAQARSDGGRHSDNIAADAIEA 119

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           LI AL+L+ GIE A TF+   W           +  K  LQEWA A+    PEY++  R 
Sbjct: 120 LIGALFLERGIEAARTFILAQWGALIDGQQAAPKHPKAALQEWALARGRRPPEYEIVSRE 179

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           GPDH PRF + V I  LA A+    SK+
Sbjct: 180 GPDHAPRFRIAVSIGKLARAEAQGASKQ 207


>gi|239917409|ref|YP_002956967.1| RNAse III [Micrococcus luteus NCTC 2665]
 gi|239838616|gb|ACS30413.1| RNAse III [Micrococcus luteus NCTC 2665]
          Length = 220

 Score =  206 bits (524), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 104/206 (50%), Gaps = 8/206 (3%)

Query: 23  LEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
           LE+ALTH S ++      + ERLEFLGD +LG +++  +F  +    EG+L+ R  ++VS
Sbjct: 8   LERALTHRSFAYEQGGLPTNERLEFLGDSVLGYVVTDHIFTVYPDLAEGDLARRRAAVVS 67

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140
               ++VAR + +  F+R+ +  R+   +   SI AD +E+LI A+Y+D G   A   V 
Sbjct: 68  TRALAKVARRIGIGPFVRLGTGERRTGGADKDSILADTLEALIGAVYVDHGAVAAAALVH 127

Query: 141 KYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
           ++      +    R   D KT + E A         Y +  + GP HDPR+   + +   
Sbjct: 128 RHVVPLLDEPDLLRESTDWKTVVAEAASRHGLGAVRYAIEGQ-GPAHDPRYRATLVVGER 186

Query: 199 APAQGMDCSKRAAEQVAAAE---VLK 221
                +  SK+ AE+ AAA     L+
Sbjct: 187 EYGSAVASSKKQAERDAAAASWPALE 212


>gi|227890258|ref|ZP_04008063.1| ribonuclease III [Lactobacillus johnsonii ATCC 33200]
 gi|227849072|gb|EEJ59158.1| ribonuclease III [Lactobacillus johnsonii ATCC 33200]
          Length = 226

 Score =  206 bits (524), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 66/213 (30%), Positives = 102/213 (47%), Gaps = 6/213 (2%)

Query: 1   MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLIST 57
           M ++ +   L+K+ G  F N  LLE A THSS ++ +  ++ YE+LEFLGD +L L +S 
Sbjct: 1   MVSVAFKQNLKKKYGIKFNNEKLLEDAFTHSSYANEHSGRKDYEKLEFLGDAVLELAVSD 60

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            L+ HF    EGEL+   +++V  E  S+ A E      I +     K       ++  D
Sbjct: 61  YLYRHFPRLNEGELTRMRSNIVRTEGFSEFAIECGFPEEIDLGKGEEKAGARKRKTLLED 120

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYK 176
           V E+   AL+LD G+     F+         +      RD KTELQE       V  EY+
Sbjct: 121 VFEAFNGALFLDQGMPAVQHFLHLTVYPLIAEGDFNASRDYKTELQERLQVNGPVKIEYQ 180

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           V      +  P F V + ++G   ++G   +K+
Sbjct: 181 VISED--ESKPSFKVQLLVNGEKVSEGQGRNKK 211


>gi|184200693|ref|YP_001854900.1| ribonuclease III [Kocuria rhizophila DC2201]
 gi|183580923|dbj|BAG29394.1| ribonuclease III [Kocuria rhizophila DC2201]
          Length = 234

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 66/214 (30%), Positives = 96/214 (44%), Gaps = 7/214 (3%)

Query: 1   MSAL-RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLIST 57
           M+AL     L +R+G    +   L  ALTH S ++ +      ERLEFLGD +L L ++ 
Sbjct: 1   MTALPDPGELLERLGVDL-DTETLRIALTHRSYAYEHPGEVHNERLEFLGDAVLQLAVTD 59

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            +++ +    EG L+    S+VSA   + VAR L L   IR+     +   S   SI AD
Sbjct: 60  EIYHRYPEWDEGRLAKLRASVVSARALAGVARSLGLGPHIRLGKGEVRTHGSDKASILAD 119

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEY 175
             E++I A+Y   G   A   V +        +      RD KT + E        T  Y
Sbjct: 120 TTEAVIGAVYESLGPVPARDLVLRMMVPLLEDTRVLHEGRDWKTHIVELVAQHGLGTVRY 179

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           +V   +GPDH+  FT    + G     G   SK+
Sbjct: 180 EVEG-TGPDHERHFTADAVVDGNVLGHGEGTSKK 212


>gi|268598421|ref|ZP_06132588.1| ribonuclease III [Neisseria gonorrhoeae MS11]
 gi|291044414|ref|ZP_06570123.1| ribonuclease III [Neisseria gonorrhoeae DGI2]
 gi|268582552|gb|EEZ47228.1| ribonuclease III [Neisseria gonorrhoeae MS11]
 gi|291011308|gb|EFE03304.1| ribonuclease III [Neisseria gonorrhoeae DGI2]
          Length = 267

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 6/206 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F  
Sbjct: 39  HTAIQKKLGYAFRDMSLLRRALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 95

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 96  LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 155

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +  D     A   V   + +R  ++      +D KT LQE   A+    P+Y++  + G 
Sbjct: 156 VSFDADFNTAEKVVRHLFAERVRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGH 215

Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSK 208
             D  F +  ++  L    +    S+
Sbjct: 216 ADDSMFVISCDLGELGFVCRAKGTSR 241


>gi|300361933|ref|ZP_07058110.1| ribonuclease III [Lactobacillus gasseri JV-V03]
 gi|300354552|gb|EFJ70423.1| ribonuclease III [Lactobacillus gasseri JV-V03]
          Length = 226

 Score =  205 bits (523), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 100/206 (48%), Gaps = 5/206 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHFD 64
           + L+++ G  F N +LLE A THSS ++ +  ++ YE+LEFLGD +L L +S  L+ HF 
Sbjct: 8   NNLKEKYGIKFNNENLLEDAFTHSSYANEHPGRKDYEKLEFLGDAVLELAVSDYLYRHFP 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EGEL+   +++V  E  S+ A E    + I +     K       ++  DV E+   
Sbjct: 68  RLNEGELTRMRSNIVRTEGFSEFAIECGFPAEINLGKGEEKAGARKRKTLLEDVFEAFNG 127

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           AL+LD G+     F+         +      RD KTELQE       V  EY+V      
Sbjct: 128 ALFLDQGMPAVQHFLHLTVYPLIAEGDFNASRDYKTELQERLQVNGPVKIEYQVIAED-- 185

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKR 209
           +  P F V + ++    ++G   +K+
Sbjct: 186 ESKPYFKVQLLVNDKKISEGQGRNKK 211


>gi|218767809|ref|YP_002342321.1| ribonuclease III [Neisseria meningitidis Z2491]
 gi|22654074|sp|Q9JVD3|RNC_NEIMA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|121051817|emb|CAM08123.1| putative ribonuclease III [Neisseria meningitidis Z2491]
          Length = 239

 Score =  205 bits (523), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 6/206 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F  
Sbjct: 11  HAAIQKKLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 67

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 68  LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127

Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +  D     A   V   + +R   +      +D KT LQE   A+    P+Y++  + G 
Sbjct: 128 VSFDADFNTAEKVVRHLFAERVRRVDFQNQAKDGKTALQEALQARRFALPKYRIEEQIGH 187

Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSK 208
            +D  F +  ++  L    +    S+
Sbjct: 188 ANDSMFVISCDLGELGFVCRAKGTSR 213


>gi|288560534|ref|YP_003424020.1| ribonuclease III Rnc [Methanobrevibacter ruminantium M1]
 gi|288543244|gb|ADC47128.1| ribonuclease III Rnc [Methanobrevibacter ruminantium M1]
          Length = 232

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 63/211 (29%), Positives = 95/211 (45%), Gaps = 2/211 (0%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
           +      +  L E A THSS +  +    YERLEFLGD +L +L S  L N      EG+
Sbjct: 6   KFDIVPNDMELYETAFTHSSYASKHHLNDYERLEFLGDSVLNMLTSEFLQNMHPDFGEGK 65

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           L+    + V        + E  L   ++++ +      + + SI ADV ES + A+YLD 
Sbjct: 66  LTKLRANYVCQNALIVYSHEFGLDKCVKLNLEDNALTDNEVISITADVFESFLGAIYLDQ 125

Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           GI     F+             F  D K+ ++E+  A       Y++    G  HD  F 
Sbjct: 126 GISKCKEFLTITVFPYIENEQIFFHDYKSTIKEYGDA-IDKEITYELIEEHGAPHDKTFV 184

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           + + I G+    G+  SK+ AEQVAA   +K
Sbjct: 185 MKILIDGVDFGHGVGKSKKEAEQVAACNAIK 215


>gi|254493164|ref|ZP_05106335.1| ribonuclease III [Neisseria gonorrhoeae 1291]
 gi|268600776|ref|ZP_06134943.1| ribonuclease III [Neisseria gonorrhoeae PID18]
 gi|226512204|gb|EEH61549.1| ribonuclease III [Neisseria gonorrhoeae 1291]
 gi|268584907|gb|EEZ49583.1| ribonuclease III [Neisseria gonorrhoeae PID18]
          Length = 267

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 105/206 (50%), Gaps = 6/206 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F  
Sbjct: 39  HTAIQKKLGYAFRDMSLLRRALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 95

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 96  LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSSGFRRPSILADAMEAMFAA 155

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +  D     A   V   + +R  ++      +D KT LQE   A+    P+Y++  + G 
Sbjct: 156 VSFDADFNTAEKVVRHLFAERVRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGH 215

Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSK 208
            +D  F +  ++  L    +    S+
Sbjct: 216 ANDSMFVISCDLGELGFVCRAKGTSR 241


>gi|194333018|ref|YP_002014878.1| Ribonuclease III [Prosthecochloris aestuarii DSM 271]
 gi|194310836|gb|ACF45231.1| Ribonuclease III [Prosthecochloris aestuarii DSM 271]
          Length = 277

 Score =  205 bits (522), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 63/222 (28%), Positives = 103/222 (46%), Gaps = 11/222 (4%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--------ESYERLEFLGDRILGL 53
           +A+R + +E+ I    A+  + + A TH S  H           +S +RLEFLGD +L L
Sbjct: 38  NAIR-AYVEQLIRQPCASVDIYKTAFTHRSFVHDQHQGSSPAPFDSNQRLEFLGDAVLDL 96

Query: 54  LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
           +IS  L+  F  + EG LS   + +V+ ++ +  A+ + L + + +     ++      +
Sbjct: 97  IISEHLYKLFPESDEGALSSTRSKIVNRKSLADFAQAIALGNQLIIGESADEEKIRKSEA 156

Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGV 171
             AD  E+LI A+YLD G+     F+D +        K      + K+ L E+A A    
Sbjct: 157 TMADAFEALIGAIYLDKGLPAVQRFIDDHVMTIVDVPKLATIEHNHKSRLIEFAQANQLS 216

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            P+Y +    G +H   FTV V   G     G    K+ AEQ
Sbjct: 217 HPQYTIIREEGAEHQKTFTVEVSFDGKPFGTGTAARKKDAEQ 258


>gi|156359582|ref|XP_001624846.1| predicted protein [Nematostella vectensis]
 gi|156211649|gb|EDO32746.1| predicted protein [Nematostella vectensis]
          Length = 917

 Score =  205 bits (522), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 111/226 (49%), Gaps = 15/226 (6%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
           +    E+  G  F +  LL +A TH  +  ++      +RLEFLGD +L  ++S  L+ H
Sbjct: 677 KLVEFEEGSGIPFTHIRLLARAFTHPQVGKNNLTLGDNQRLEFLGDSVLQFVVSVFLYQH 736

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L++  +SLV++ + +++AR+L+L  FI           +    + ADV+E+L
Sbjct: 737 FPDHHEGHLTLLRSSLVNSRSQAEIARQLNLQEFINTGP------TNVREKMLADVLEAL 790

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHA-----KFGVTPEY 175
           IAA+++D G+     F    +  R   S   +   D+K++LQ+   A     K    P Y
Sbjct: 791 IAAVFVDKGLRHVEVFCRVCFFSRLEDSIVNQEWIDSKSQLQQCCLAMRTEGKSPDLPIY 850

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           ++   +GP H  ++ V V   G    +G   S   AE  AA + L+
Sbjct: 851 RILQDAGPAHHKKYQVGVYFQGTRCGKGEGSSIHQAEMAAAKDALE 896



 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 49/212 (23%), Positives = 81/212 (38%), Gaps = 55/212 (25%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHS---------------SISHSYQE------------ 38
             TL+ ++GY F +R LL+ AL+H                S+S+   +            
Sbjct: 447 LRTLDAKLGYTFKDRMLLQLALSHPSYHLNYGMNPDHARNSLSNCGVKQPRYGDRRIHNV 506

Query: 39  ----------------------------SYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
                                         ERLEFLGD +L L+ S  LF       EG 
Sbjct: 507 HSKKKGITHLVRVMANLGKVEEDRSMIRHNERLEFLGDAVLELICSKHLFFMLPDMDEGH 566

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           L+   ++LV     + +A+ LDL+ +++ S          +    A+ +E+L+ A+YL+ 
Sbjct: 567 LATFRSALVQNRHLALLAKMLDLSDYMQFSHGPDLCQEDDLNHAMANCLEALLGAVYLEA 626

Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162
           G++VA     +          K+    K  LQ
Sbjct: 627 GLQVATELFSRLAFTEQDLYDKWMELPKHRLQ 658


>gi|114600823|ref|XP_001157589.1| PREDICTED: ribonuclease III, nuclear isoform 7 [Pan troglodytes]
          Length = 1382

 Score =  204 bits (521), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1114 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1173

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1174 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1232

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R  +    +   D K++LQ+         K    P Y
Sbjct: 1233 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1292

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            K     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1293 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1339



 Score = 98.2 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 54/107 (50%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 971  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1030

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
              +        S +    A+  E+LI A+YL+G +E A     +   
Sbjct: 1031 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1077



 Score = 43.1 bits (101), Expect = 0.031,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 13/87 (14%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            L+K IGY F +R LL+ A+TH S  ++      + R     + +    I       +  
Sbjct: 878 HLDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHAR-----NSLSNCGI---RQPKYGD 929

Query: 66  AKEGELSVRFNSLVSAETCSQVARELD 92
            K   + +R   +    T   +   L 
Sbjct: 930 RKVHHMHMRKKGI---NTLINIMSRLG 953


>gi|291395193|ref|XP_002714143.1| PREDICTED: ribonuclease III, nuclear [Oryctolagus cuniculus]
          Length = 1338

 Score =  204 bits (521), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1070 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1129

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1130 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1188

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R  +    +   D K++LQ+         K    P Y
Sbjct: 1189 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1248

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            K     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1249 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1295



 Score = 98.2 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 54/107 (50%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 927  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 986

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
              +        S +    A+  E+LI A+YL+G +E A     +   
Sbjct: 987  LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1033


>gi|194097974|ref|YP_002001022.1| ribonuclease III [Neisseria gonorrhoeae NCCP11945]
 gi|239998445|ref|ZP_04718369.1| ribonuclease III [Neisseria gonorrhoeae 35/02]
 gi|240080149|ref|ZP_04724692.1| ribonuclease III [Neisseria gonorrhoeae FA19]
 gi|240117386|ref|ZP_04731448.1| ribonuclease III [Neisseria gonorrhoeae PID1]
 gi|240122943|ref|ZP_04735899.1| ribonuclease III [Neisseria gonorrhoeae PID332]
 gi|240125195|ref|ZP_04738081.1| ribonuclease III [Neisseria gonorrhoeae SK-92-679]
 gi|240127651|ref|ZP_04740312.1| ribonuclease III [Neisseria gonorrhoeae SK-93-1035]
 gi|238690180|sp|B4RJT7|RNC_NEIG2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|193933264|gb|ACF29088.1| ribonuclease III [Neisseria gonorrhoeae NCCP11945]
          Length = 239

 Score =  204 bits (521), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 105/206 (50%), Gaps = 6/206 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F  
Sbjct: 11  HTAIQKKLGYAFRDMSLLRRALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 67

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 68  LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +  D     A   V   + +R  ++      +D KT LQE   A+    P+Y++  + G 
Sbjct: 128 VSFDADFNTAEKVVRHLFAERVRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGH 187

Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSK 208
            +D  F +  ++  L    +    S+
Sbjct: 188 ANDSMFVISCDLGELGFVCRAKGTSR 213


>gi|114600825|ref|XP_001157646.1| PREDICTED: ribonuclease III, nuclear isoform 8 [Pan troglodytes]
          Length = 1343

 Score =  204 bits (521), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1075 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1134

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1135 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1193

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R  +    +   D K++LQ+         K    P Y
Sbjct: 1194 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1253

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            K     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1254 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1300



 Score = 98.2 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 54/107 (50%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 932  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 991

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
              +        S +    A+  E+LI A+YL+G +E A     +   
Sbjct: 992  LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1038


>gi|73953908|ref|XP_854135.1| PREDICTED: similar to Ribonuclease III (RNase III) (Drosha) (p241)
            isoform 2 [Canis familiaris]
          Length = 1365

 Score =  204 bits (521), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1097 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1156

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1157 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1215

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R  +    +   D K++LQ+         K    P Y
Sbjct: 1216 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1275

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            K     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1276 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1322



 Score = 98.2 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 54/107 (50%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 954  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1013

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
              +        S +    A+  E+LI A+YL+G +E A     +   
Sbjct: 1014 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1060


>gi|297294054|ref|XP_002804372.1| PREDICTED: ribonuclease 3 isoform 2 [Macaca mulatta]
 gi|297294056|ref|XP_002804373.1| PREDICTED: ribonuclease 3 isoform 3 [Macaca mulatta]
          Length = 1374

 Score =  204 bits (521), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1106 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1165

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1166 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1224

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R  +    +   D K++LQ+         K    P Y
Sbjct: 1225 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1284

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            K     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1285 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1331



 Score = 98.2 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 54/107 (50%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 963  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1022

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
              +        S +    A+  E+LI A+YL+G +E A     +   
Sbjct: 1023 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1069


>gi|332251722|ref|XP_003274996.1| PREDICTED: ribonuclease 3-like [Nomascus leucogenys]
          Length = 1331

 Score =  204 bits (521), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1063 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1122

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1123 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1181

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R  +    +   D K++LQ+         K    P Y
Sbjct: 1182 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1241

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            K     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1242 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1288



 Score = 98.2 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 54/107 (50%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 920  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 979

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
              +        S +    A+  E+LI A+YL+G +E A     +   
Sbjct: 980  LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1026


>gi|301769069|ref|XP_002919953.1| PREDICTED: LOW QUALITY PROTEIN: ribonuclease 3-like [Ailuropoda
            melanoleuca]
          Length = 1369

 Score =  204 bits (521), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1101 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1160

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1161 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1219

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R  +    +   D K++LQ+         K    P Y
Sbjct: 1220 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1279

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            K     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1280 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1326



 Score = 98.2 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 54/107 (50%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 958  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1017

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
              +        S +    A+  E+LI A+YL+G +E A     +   
Sbjct: 1018 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1064


>gi|149732818|ref|XP_001500764.1| PREDICTED: ribonuclease type III, nuclear isoform 1 [Equus caballus]
          Length = 1374

 Score =  204 bits (521), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1106 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1165

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1166 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1224

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R  +    +   D K++LQ+         K    P Y
Sbjct: 1225 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1284

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            K     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1285 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1331



 Score = 98.2 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 54/107 (50%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 963  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1022

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
              +        S +    A+  E+LI A+YL+G +E A     +   
Sbjct: 1023 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1069


>gi|119489618|ref|ZP_01622378.1| Ribonuclease III [Lyngbya sp. PCC 8106]
 gi|119454530|gb|EAW35678.1| Ribonuclease III [Lyngbya sp. PCC 8106]
          Length = 233

 Score =  204 bits (521), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 60/210 (28%), Positives = 99/210 (47%), Gaps = 13/210 (6%)

Query: 16  AFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDS-AKEGEL 71
              +  L  +ALTH S  + +    ++ ERLEFLGD +LG L+  LL+ ++     E ++
Sbjct: 6   TIKDEKLRLRALTHRSYVNEHPGDGKNNERLEFLGDAVLGFLVGELLYTYYPEELSEAKM 65

Query: 72  SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131
           +    +LV  +   + A +L +   +R+     KD      ++ +D  E+ I A YLD G
Sbjct: 66  TRLRAALVDEQQLGKFAAQLGIGEIMRLGKGAIKDGGYQNPALLSDTFEAYIGAYYLDAG 125

Query: 132 IEVAGTFVDKYWKQRA---------LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           IE    F+   + + A          K+ +   D+K   Q+WA A+FG  P+Y +  +SG
Sbjct: 126 IEKVREFITPLFTKVANEILGMHTEEKNSEHLIDSKNRFQQWALAEFGENPKYFIIDQSG 185

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           PDH   F   V +       G    K+ A+
Sbjct: 186 PDHAKEFIAEVRVKDQVYGLGQGRRKQDAQ 215


>gi|114600815|ref|XP_526954.2| PREDICTED: ribonuclease III, nuclear isoform 11 [Pan troglodytes]
 gi|114600817|ref|XP_001157424.1| PREDICTED: ribonuclease III, nuclear isoform 4 [Pan troglodytes]
 gi|114600819|ref|XP_001157533.1| PREDICTED: ribonuclease III, nuclear isoform 6 [Pan troglodytes]
 gi|332821657|ref|XP_001157472.2| PREDICTED: ribonuclease 3 isoform 5 [Pan troglodytes]
          Length = 1374

 Score =  204 bits (521), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1106 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1165

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1166 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1224

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R  +    +   D K++LQ+         K    P Y
Sbjct: 1225 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1284

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            K     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1285 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1331



 Score = 98.2 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 54/107 (50%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 963  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1022

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
              +        S +    A+  E+LI A+YL+G +E A     +   
Sbjct: 1023 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1069


>gi|155030234|ref|NP_037367.3| ribonuclease 3 isoform 1 [Homo sapiens]
 gi|20139357|sp|Q9NRR4|RNC_HUMAN RecName: Full=Ribonuclease 3; AltName: Full=Protein Drosha; AltName:
            Full=Ribonuclease III; Short=RNase III; AltName:
            Full=p241
          Length = 1374

 Score =  204 bits (521), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1106 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1165

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1166 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1224

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R  +    +   D K++LQ+         K    P Y
Sbjct: 1225 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1284

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            K     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1285 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1331



 Score = 98.2 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 54/107 (50%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 963  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1022

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
              +        S +    A+  E+LI A+YL+G +E A     +   
Sbjct: 1023 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1069


>gi|297675037|ref|XP_002815506.1| PREDICTED: ribonuclease 3-like [Pongo abelii]
          Length = 1374

 Score =  204 bits (521), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1106 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1165

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1166 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1224

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R  +    +   D K++LQ+         K    P Y
Sbjct: 1225 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1284

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            K     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1285 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1331



 Score = 98.2 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 54/107 (50%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 963  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1022

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
              +        S +    A+  E+LI A+YL+G +E A     +   
Sbjct: 1023 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1069


>gi|296194850|ref|XP_002745134.1| PREDICTED: ribonuclease 3 isoform 1 [Callithrix jacchus]
          Length = 1374

 Score =  204 bits (520), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1106 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1165

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1166 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1224

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R  +    +   D K++LQ+         K    P Y
Sbjct: 1225 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1284

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            K     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1285 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1331



 Score = 97.8 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 54/107 (50%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 963  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1022

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
              +        S +    A+  E+LI A+YL+G +E A     +   
Sbjct: 1023 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1069


>gi|218663008|ref|ZP_03518938.1| ribonuclease III [Rhizobium etli IE4771]
          Length = 206

 Score =  204 bits (520), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 98/159 (61%), Positives = 127/159 (79%)

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           + ELSVR N LVSAETC+ VA EL+L  +IR  +D++K     M +++ADVVESLIAA+Y
Sbjct: 41  KAELSVRLNQLVSAETCAAVADELNLHLYIRTGADVKKLTGKRMMNVRADVVESLIAAIY 100

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           LDGG+EVA  F+ +YW+ RA+++   +RDAKTELQEW+HAKFGVTP Y+V  RSGPDHDP
Sbjct: 101 LDGGLEVARRFILRYWQGRAVRADGAKRDAKTELQEWSHAKFGVTPIYRVDERSGPDHDP 160

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           RF V VE++G+ P  G++ SKRAAEQVAA ++L+REGIW
Sbjct: 161 RFKVTVEVAGIKPETGVERSKRAAEQVAATKMLEREGIW 199


>gi|114600829|ref|XP_001157712.1| PREDICTED: ribonuclease III, nuclear isoform 9 [Pan troglodytes]
          Length = 1306

 Score =  204 bits (520), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1038 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1097

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1098 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1156

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R  +    +   D K++LQ+         K    P Y
Sbjct: 1157 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1216

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            K     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1217 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1263



 Score = 97.8 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 54/107 (50%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 895  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 954

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
              +        S +    A+  E+LI A+YL+G +E A     +   
Sbjct: 955  LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1001


>gi|297294058|ref|XP_001085611.2| PREDICTED: ribonuclease 3 isoform 1 [Macaca mulatta]
          Length = 1337

 Score =  204 bits (520), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1069 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1128

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1129 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1187

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R  +    +   D K++LQ+         K    P Y
Sbjct: 1188 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1247

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            K     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1248 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1294



 Score = 97.8 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 54/107 (50%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 926  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 985

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
              +        S +    A+  E+LI A+YL+G +E A     +   
Sbjct: 986  LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1032


>gi|126321160|ref|XP_001375491.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 1388

 Score =  204 bits (519), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1108 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1167

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1168 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1226

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R  +    +   D K++LQ+         K    P Y
Sbjct: 1227 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1286

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            K     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1287 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1333



 Score = 97.8 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 54/107 (50%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 965  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1024

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
              +        S +    A+  E+LI A+YL+G +E A     +   
Sbjct: 1025 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1071


>gi|206603444|gb|EDZ39924.1| Ribonuclease III [Leptospirillum sp. Group II '5-way CG']
          Length = 375

 Score =  204 bits (519), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 73/250 (29%), Positives = 113/250 (45%), Gaps = 34/250 (13%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ-----ESYERLEFLGDRILGLLISTLLFN 61
             L + +G  F     +E+ALTH S SH         +YERLEFLGDR++GL++S  L N
Sbjct: 19  EHLIRILGLPFKPTMRIEEALTHRSASHERGRKTPIPNYERLEFLGDRVIGLIVSEYLLN 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + SA EG++   F+ +VS +T + +AR +DL S++ +            +S+ AD  ES
Sbjct: 79  TWPSASEGDIGQIFSGIVSTQTLASIARRMDLGSYMILGKGSHSSGDRENSSLLADTFES 138

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALK-----------------------------SGK 152
           L AA+YL+ G+E     +  ++ Q  ++                                
Sbjct: 139 LAAAIYLEYGLETCRQVLIPWFTQPLIEIVQKIENLREVRDSSSGPVSSVIAAQPAPPRA 198

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
              + K  LQ+W  +K    P Y+V    GP H  RF + V + G    +    +KR A 
Sbjct: 199 GSLNFKLLLQKWCQSKAEELPVYQVLEEIGPAHQRRFRLGVFLKGKQLGEAEGTTKRGAS 258

Query: 213 QVAAAEVLKR 222
             AA    +R
Sbjct: 259 VHAAKNAWER 268


>gi|73953920|ref|XP_868251.1| PREDICTED: similar to Ribonuclease III (RNase III) (Drosha) (p241)
            isoform 8 [Canis familiaris]
          Length = 1297

 Score =  204 bits (519), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1029 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1088

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1089 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1147

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R  +    +   D K++LQ+         K    P Y
Sbjct: 1148 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1207

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            K     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1208 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1254



 Score = 97.8 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 54/107 (50%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
              ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 886 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 945

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
             +        S +    A+  E+LI A+YL+G +E A     +   
Sbjct: 946 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 992


>gi|289705863|ref|ZP_06502243.1| ribonuclease III [Micrococcus luteus SK58]
 gi|289557406|gb|EFD50717.1| ribonuclease III [Micrococcus luteus SK58]
          Length = 244

 Score =  204 bits (519), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 67/220 (30%), Positives = 109/220 (49%), Gaps = 9/220 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           L +R+G        LE+ALTH S ++      + ERLEFLGD +LG +++  +F  +   
Sbjct: 19  LFERLGVHIT-AGTLERALTHRSFAYEQGGLPTNERLEFLGDSVLGYVVTDHIFTVYPDL 77

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+L+ R  ++VS    ++VAR + +  F+R+ +  R+   +   SI AD +E+LI A+
Sbjct: 78  AEGDLARRRAAVVSTRALAKVARRIGIGPFVRLGTGERRTGGADKDSILADTLEALIGAV 137

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           Y+D G   A   V ++      +    R   D KT + E A         Y +  + GP 
Sbjct: 138 YVDHGAVAAAALVHRHVVPLLDEPDLLRESTDWKTVVAEAASRHGLGAVRYAIEGQ-GPA 196

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE---VLK 221
           HDPR+   + +        +  SK+ AE+ AAA     L+
Sbjct: 197 HDPRYRATLVVGEREYDSAVASSKKQAERDAAAASWPALE 236


>gi|155030236|ref|NP_001093882.1| ribonuclease 3 isoform 2 [Homo sapiens]
 gi|114600827|ref|XP_001157762.1| PREDICTED: ribonuclease 3 isoform 10 [Pan troglodytes]
          Length = 1337

 Score =  204 bits (519), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1069 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1128

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1129 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1187

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R  +    +   D K++LQ+         K    P Y
Sbjct: 1188 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1247

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            K     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1248 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1294



 Score = 97.8 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 54/107 (50%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 926  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 985

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
              +        S +    A+  E+LI A+YL+G +E A     +   
Sbjct: 986  LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1032


>gi|119631172|gb|EAX10767.1| ribonuclease III, nuclear, isoform CRA_a [Homo sapiens]
 gi|119631173|gb|EAX10768.1| ribonuclease III, nuclear, isoform CRA_a [Homo sapiens]
          Length = 1349

 Score =  204 bits (519), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1081 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1140

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1141 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1199

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R  +    +   D K++LQ+         K    P Y
Sbjct: 1200 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1259

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            K     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1260 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1306



 Score = 97.8 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 54/107 (50%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 938  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 997

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
              +        S +    A+  E+LI A+YL+G +E A     +   
Sbjct: 998  LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1044


>gi|327284145|ref|XP_003226799.1| PREDICTED: ribonuclease 3-like [Anolis carolinensis]
          Length = 1323

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 111/227 (48%), Gaps = 10/227 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E  IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1055 KLTMFEDAIGVTFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1114

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  F  +++D  K   +  T   AD++ES 
Sbjct: 1115 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFA-ITNDKTKRPVALRTKTLADLLESF 1173

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R  +    +   D K++LQ+         K    P Y
Sbjct: 1174 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1233

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            K     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1234 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMCAAMDALEK 1280



 Score = 99.8 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 4/126 (3%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 927  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 986

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
              +        S +    A+  E+LI A+YL+G +E A     +      L+     R  
Sbjct: 987  LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNCKLQESNTDR-- 1044

Query: 158  KTELQE 163
              +L E
Sbjct: 1045 --QLIE 1048


>gi|296194852|ref|XP_002745135.1| PREDICTED: ribonuclease 3 isoform 2 [Callithrix jacchus]
          Length = 1337

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1069 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1128

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1129 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1187

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R  +    +   D K++LQ+         K    P Y
Sbjct: 1188 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1247

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            K     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1248 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1294



 Score = 97.8 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 54/107 (50%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 926  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 985

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
              +        S +    A+  E+LI A+YL+G +E A     +   
Sbjct: 986  LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1032


>gi|60679772|ref|YP_209916.1| putative ribonuclease III [Bacteroides fragilis NCTC 9343]
 gi|253564432|ref|ZP_04841889.1| ribonuclease 3 [Bacteroides sp. 3_2_5]
 gi|81317155|sp|Q5LIS2|RNC_BACFN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|60491206|emb|CAH05954.1| putative ribonuclease III [Bacteroides fragilis NCTC 9343]
 gi|251948208|gb|EES88490.1| ribonuclease 3 [Bacteroides sp. 3_2_5]
 gi|301161237|emb|CBW20775.1| putative ribonuclease III [Bacteroides fragilis 638R]
          Length = 290

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 114/227 (50%), Gaps = 13/227 (5%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59
             YS   + +G+   N  L E+AL H S +   ++    + ERLEFLGD IL  ++  ++
Sbjct: 18  ESYSCFYRILGFYPRNIRLYEQALLHKSTAVRSEKGRPLNNERLEFLGDAILDAIVGDIV 77

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           + HF+  +EG L+   + +V  ET +++A E+ L   I+ S+       S  + +  +  
Sbjct: 78  YQHFEGKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAF 133

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYK 176
           E+ I A+YLD G E    F+++   +  +   K  R   + K++L EW+     +   ++
Sbjct: 134 EAFIGAIYLDRGYECCKQFMERRIIEPYIDLDKLSRKEVNFKSKLIEWSQKN-KMEVSFE 192

Query: 177 VTFRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +  +S   +++P F   V I G+    G   SK+ ++Q AA   LK+
Sbjct: 193 LIEQSLDKENNPVFQTEVRIEGILGGSGTGYSKKESQQNAAQMTLKK 239


>gi|149732820|ref|XP_001500777.1| PREDICTED: ribonuclease type III, nuclear isoform 2 [Equus caballus]
          Length = 1337

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1069 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1128

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1129 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1187

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R  +    +   D K++LQ+         K    P Y
Sbjct: 1188 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1247

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            K     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1248 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1294



 Score = 97.8 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 54/107 (50%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 926  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 985

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
              +        S +    A+  E+LI A+YL+G +E A     +   
Sbjct: 986  LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1032


>gi|73953922|ref|XP_536514.2| PREDICTED: similar to Ribonuclease III (RNase III) (Drosha) (p241)
            isoform 1 [Canis familiaris]
          Length = 1328

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1060 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1119

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1120 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1178

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R  +    +   D K++LQ+         K    P Y
Sbjct: 1179 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1238

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            K     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1239 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1285



 Score = 97.8 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 54/107 (50%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 917  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 976

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
              +        S +    A+  E+LI A+YL+G +E A     +   
Sbjct: 977  LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1023


>gi|53711509|ref|YP_097501.1| ribonuclease III [Bacteroides fragilis YCH46]
 gi|81383900|sp|Q64ZV9|RNC_BACFR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|52214374|dbj|BAD46967.1| ribonuclease III [Bacteroides fragilis YCH46]
          Length = 290

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 114/227 (50%), Gaps = 13/227 (5%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59
             YS   + +G+   N  L E+AL H S +   ++    + ERLEFLGD IL  ++  ++
Sbjct: 18  ESYSCFYRILGFYPRNIRLYEQALLHKSTAVRSEKGRPLNNERLEFLGDAILDAIVGDIV 77

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           + HF+  +EG L+   + +V  ET +++A E+ L   I+ S+       S  + +  +  
Sbjct: 78  YQHFEGKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAF 133

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYK 176
           E+ I A+YLD G E    F+++   +  +   K  R   + K++L EW+     +   ++
Sbjct: 134 EAFIGAIYLDRGYECCKQFMERRIIEPYIDLDKLSRKEVNFKSKLIEWSQKN-KMEVSFE 192

Query: 177 VTFRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +  +S   +++P F   V I G+    G   SK+ ++Q AA   LK+
Sbjct: 193 LIEQSLDKENNPVFQTEVRIEGILGGSGTGYSKKESQQNAAQMTLKK 239


>gi|313665378|ref|YP_004047249.1| ribonuclease III [Mycoplasma leachii PG50]
 gi|312949374|gb|ADR23970.1| ribonuclease III [Mycoplasma leachii PG50]
          Length = 232

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 63/226 (27%), Positives = 110/226 (48%), Gaps = 6/226 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61
           +      ++      ++ + ++ALTH+S ++  +   SY+RLEFLGD IL +  S  LF 
Sbjct: 1   MNIKNFFEKYNIKINDQQIYKEALTHNSYANERKLKYSYQRLEFLGDAILQMYTSKFLFF 60

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           ++    EGEL+    S+V  E+ S++AR+++L   IR+             SI AD+ E+
Sbjct: 61  NYSKLGEGELTRLRASIVREESLSRIARDINLGQLIRLGHSELMTKGYEKQSILADIFEA 120

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           L AA+YLD   E    ++++   +           +D K+ELQE   ++     +Y    
Sbjct: 121 LTAAIYLDQSEEGLLIWLEQTLFKYMKDPTFINVTKDFKSELQELLQSEKRSDLKYITEN 180

Query: 180 RS--GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                 ++   +TV + + G     G   SK+ AEQ AA++ L + 
Sbjct: 181 EEFFANENKTLYTVSINLDGQKFGVGKGYSKQEAEQNAASDCLSKL 226


>gi|210622528|ref|ZP_03293221.1| hypothetical protein CLOHIR_01169 [Clostridium hiranonis DSM 13275]
 gi|210154163|gb|EEA85169.1| hypothetical protein CLOHIR_01169 [Clostridium hiranonis DSM 13275]
          Length = 204

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 63/183 (34%), Positives = 89/183 (48%), Gaps = 4/183 (2%)

Query: 29  HSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQ 86
           HSS S+  ++    ER+EFLGD +LGL+IS  +F       EGEL+    ++V   + S+
Sbjct: 1   HSSYSNENKKFKYNERMEFLGDSVLGLVISDHIFKKETGVPEGELTKLRANIVCEGSLSE 60

Query: 87  VARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQR 146
            A+ + L  +I +             SI AD  E++IAA+YLDGGIE A  F+       
Sbjct: 61  AAKNIRLGDYILLGRGEEATGGRERKSILADAFEAVIAAIYLDGGIESASKFILSNLSDI 120

Query: 147 ALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
              S  GK  RD KT+LQE           YK+    GPDH+  F ++V +       G 
Sbjct: 121 IKDSIDGKIFRDYKTQLQEEIQKNGSSNIWYKLLDEDGPDHNKTFIMMVGVEDRELGVGK 180

Query: 205 DCS 207
             S
Sbjct: 181 GKS 183


>gi|194306545|ref|NP_081075.3| ribonuclease 3 [Mus musculus]
 gi|194328670|ref|NP_001123621.1| ribonuclease 3 [Mus musculus]
 gi|81882947|sp|Q5HZJ0|RNC_MOUSE RecName: Full=Ribonuclease 3; AltName: Full=Protein Drosha; AltName:
            Full=Ribonuclease III; Short=RNase III
 gi|57242920|gb|AAH88999.1| Rnasen protein [Mus musculus]
 gi|74184402|dbj|BAE25729.1| unnamed protein product [Mus musculus]
 gi|74215950|dbj|BAE28629.1| unnamed protein product [Mus musculus]
          Length = 1373

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1105 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1164

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1165 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1223

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R  +    +   D K++LQ+         K    P Y
Sbjct: 1224 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1283

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            K     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1284 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1330



 Score = 97.8 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 54/107 (50%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 962  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1021

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
              +        S +    A+  E+LI A+YL+G +E A     +   
Sbjct: 1022 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1068


>gi|169261416|gb|ACA52288.1| nuclear ribonuclease III protein [Xenopus tropicalis]
          Length = 1325

 Score =  203 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 111/227 (48%), Gaps = 10/227 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1061 KLTKFEEAIGVEFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1120

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  F  +++D  K      T   AD++ES 
Sbjct: 1121 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFA-ITNDKTKRPVVLRTKTLADLLESF 1179

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R  +    +   D K++LQ+         K    P Y
Sbjct: 1180 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1239

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            K     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1240 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1286



 Score = 97.5 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 54/107 (50%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F   +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 918  NHNERLEFLGDAVVEFLTSVHLYYLFPLLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 977

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
              +        S +    A+  E+L+ A+YL+GG+E A     +   
Sbjct: 978  LYAHGPDLCRESDLRHAMANCFEALMGAVYLEGGLEEAKQLFGRLLF 1024


>gi|23464896|ref|NP_695499.1| ribonuclease III [Bifidobacterium longum NCC2705]
 gi|23325487|gb|AAN24135.1| ribonuclease III [Bifidobacterium longum NCC2705]
          Length = 277

 Score =  203 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 71/220 (32%), Positives = 106/220 (48%), Gaps = 10/220 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64
           + L + +G   +   LL +ALTH S SH +    +YERLEFLGD +L L+ +  LF    
Sbjct: 48  NELLEALGTTLS-PDLLVQALTHRSFSHEHPGVANYERLEFLGDAVLELVSTETLFTIHP 106

Query: 65  SAKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
              EG+L+      VS +  S +A+ +L +  +I +     +   +   SI  D+VESLI
Sbjct: 107 DMTEGQLAKMRAKAVSEDALSAIAKTKLKVGPYILLGHGEAEQGGAEKNSILCDIVESLI 166

Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A +L+ GI+ A   + +        + +     D KT L   AH      P Y +   S
Sbjct: 167 GATFLEHGIDEARKVIHRLIDDTLAEVATEGPALDWKTSLTVKAHGLGKEEPVYHM-EVS 225

Query: 182 GPDHDPRFTVVVEI--SGLAPAQGMDCSKRAAEQVAAAEV 219
           GP++   FT  V +  +G     G   SKR A Q+AAAE 
Sbjct: 226 GPEYAQIFTARVSLGENGDIIGIGKGSSKRKA-QLAAAEA 264


>gi|17227776|ref|NP_484324.1| ribonuclease III [Nostoc sp. PCC 7120]
 gi|22654062|sp|Q8Z023|RNC_ANASP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|17135258|dbj|BAB77804.1| ribonuclease III [Nostoc sp. PCC 7120]
          Length = 228

 Score =  203 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 88/202 (43%), Gaps = 8/202 (3%)

Query: 17  FANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           F +  LL +ALTH S  +   E     ERLEFLGD IL  L    L+       E EL+ 
Sbjct: 7   FRDDKLLRRALTHRSYVNENPEEGEHNERLEFLGDAILNFLSGEYLYRSHPDRGEDELTR 66

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD--GG 131
           R ++LV  +  ++ A E+ L   +R+     +D      ++ +   E++I A YLD    
Sbjct: 67  RRSALVDEKQLAKFAIEVGLDFKMRLGKGAIRDGGYQNPNLLSSTFEAVIGAYYLDNNSN 126

Query: 132 IEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVT-PEYKVTFRSGPDHDPR 188
           IE     ++  ++     +   +   D+K   QEW     G T P+Y      G  H P 
Sbjct: 127 IEAVRAIIEPLFESVPEQIVVVRSNVDSKNRFQEWVQRNIGPTPPKYLTEQIGGFSHAPE 186

Query: 189 FTVVVEISGLAPAQGMDCSKRA 210
           F   V +      +G+  +K+ 
Sbjct: 187 FKATVLVGEKEYGEGIGKNKKD 208


>gi|297463231|ref|XP_002702571.1| PREDICTED: ribonuclease III, nuclear [Bos taurus]
 gi|297487774|ref|XP_002696435.1| PREDICTED: ribonuclease III, nuclear-like isoform 1 [Bos taurus]
 gi|296475747|gb|DAA17862.1| ribonuclease III, nuclear-like isoform 1 [Bos taurus]
          Length = 1367

 Score =  203 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 111/227 (48%), Gaps = 10/227 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E  IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1099 KLTEFEDAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1158

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1159 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1217

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R  +    +   D K++LQ+         K    P Y
Sbjct: 1218 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1277

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            K     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1278 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1324



 Score = 97.8 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 54/107 (50%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 956  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1015

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
              +        S +    A+  E+LI A+YL+G +E A     +   
Sbjct: 1016 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1062


>gi|15676584|ref|NP_273728.1| ribonuclease III [Neisseria meningitidis MC58]
 gi|22654075|sp|Q9K0C8|RNC_NEIMB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|7225914|gb|AAF41104.1| ribonuclease III [Neisseria meningitidis MC58]
 gi|261392941|emb|CAX50526.1| ribonuclease III (RNase III) [Neisseria meningitidis 8013]
 gi|316983658|gb|EFV62639.1| ribonuclease III [Neisseria meningitidis H44/76]
 gi|325139865|gb|EGC62396.1| ribonuclease III [Neisseria meningitidis CU385]
 gi|325200628|gb|ADY96083.1| ribonuclease III [Neisseria meningitidis H44/76]
          Length = 239

 Score =  203 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 6/206 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F  
Sbjct: 11  HAAIQKKLGYAFRDISLLRQALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 67

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 68  LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +  D     A   V   +  R  ++      +D KT LQE   A+    P+Y++  + G 
Sbjct: 128 VSFDADFNTAEKVVRHLFADRVRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGY 187

Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSK 208
            +D  F +  ++  L    +    S+
Sbjct: 188 ANDSMFVISCDLGELGFVCRAKGTSR 213


>gi|265764902|ref|ZP_06093177.1| ribonuclease III [Bacteroides sp. 2_1_16]
 gi|263254286|gb|EEZ25720.1| ribonuclease III [Bacteroides sp. 2_1_16]
          Length = 290

 Score =  203 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 114/227 (50%), Gaps = 13/227 (5%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59
             YS   + +G+   N  L E+AL H S +   ++    + ERLEFLGD IL  ++  ++
Sbjct: 18  ESYSCFYRILGFYPRNIRLYEQALLHKSTAVRSEKGRPLNNERLEFLGDAILDAIVGDIV 77

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           + HF+  +EG L+   + +V  ET +++A E+ L   I+ S+       S  + +  +  
Sbjct: 78  YQHFEGKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAF 133

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYK 176
           E+ I A+YLD G E    F+++   +  +   K  R   + K++L EW+     +   ++
Sbjct: 134 EAFIGAIYLDRGYECCKQFMERRIIEPYIDLDKLSRKEVNFKSKLIEWSQKN-KMEVSFE 192

Query: 177 VTFRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +  +S   +++P F   V I G+    G   SK+ ++Q AA   LK+
Sbjct: 193 LIEQSLDKENNPVFQTEVRIEGILGGSGTGYSKKESQQNAAQMTLKK 239


>gi|289804515|ref|ZP_06535144.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
          Length = 187

 Score =  203 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 58/171 (33%), Positives = 87/171 (50%), Gaps = 3/171 (1%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102
           +EFLGD IL  +I+  L++ F    EG++S    +LV   T +++ARE DL   +R+   
Sbjct: 1   MEFLGDSILSFVIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPG 60

Query: 103 LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTE 160
             K       SI AD VE+LI  ++LD  I+     +  ++K R   +  G  ++D KT 
Sbjct: 61  ELKSGGFRRESILADTVEALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTR 120

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
           LQE+   +    P Y V    G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 121 LQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 171


>gi|293399592|ref|ZP_06643745.1| ribonuclease III [Neisseria gonorrhoeae F62]
 gi|291610161|gb|EFF39283.1| ribonuclease III [Neisseria gonorrhoeae F62]
          Length = 267

 Score =  203 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 6/206 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F  
Sbjct: 39  HTAIQKKLGYAFRDMSLLRRALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 95

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 96  LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSSGFRRPSILADAMEAMFAA 155

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +  D     A   V   + +R  ++      +D KT LQE   A+    P+Y++  + G 
Sbjct: 156 VSFDADFNTAEKVVRHLFAERVRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGH 215

Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSK 208
             D  F +  ++  L    +    S+
Sbjct: 216 ADDSMFVISCDLGELGFVCRAKGTSR 241


>gi|73953918|ref|XP_868248.1| PREDICTED: similar to Ribonuclease III (RNase III) (Drosha) (p241)
           isoform 7 [Canis familiaris]
          Length = 1016

 Score =  203 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 748 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 807

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 808 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 866

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175
           IAALY+D  +E   TF++  +  R  +    +   D K++LQ+         K    P Y
Sbjct: 867 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 926

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           K     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 927 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 973



 Score = 97.5 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 54/107 (50%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
              ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 605 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 664

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
             +        S +    A+  E+LI A+YL+G +E A     +   
Sbjct: 665 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 711


>gi|227892635|ref|ZP_04010440.1| ribonuclease III [Lactobacillus ultunensis DSM 16047]
 gi|227865567|gb|EEJ72988.1| ribonuclease III [Lactobacillus ultunensis DSM 16047]
          Length = 228

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 66/214 (30%), Positives = 98/214 (45%), Gaps = 10/214 (4%)

Query: 1   MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLI 55
           M + ++ + L+      F N  LLE+A THSS S+ + +     YE+LEFLGD +L L +
Sbjct: 1   MVSTKFLNKLKDEYNIEFNNEKLLEEAFTHSSYSNEHPDDGIRDYEKLEFLGDAVLELAV 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S  L+ H+    EGEL+   +++V  E  S+ A E      I + +   K       ++ 
Sbjct: 61  SDYLYRHYPKLNEGELTRLRSNIVRTEGFSEFAIECGFQKEIHLGNGEEKAGARKRKTLL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPE 174
            DV E+   AL+LD G+     F+         K      RD KT+LQE       V  E
Sbjct: 121 EDVFEAFNGALFLDQGMPAVQHFLHLTVYPLIDKGEFDDSRDYKTDLQELLQQNGPVDIE 180

Query: 175 YKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCS 207
           Y V   S  P H   F V ++I+     QG   +
Sbjct: 181 YTVVSESQLPSH---FVVELKINDKVQTQGEGHN 211


>gi|224045068|ref|XP_002199233.1| PREDICTED: ribonuclease III, nuclear [Taeniopygia guttata]
          Length = 1338

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1070 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1129

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  F  +++D  K   +  T   AD++ES 
Sbjct: 1130 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFA-ITNDKTKRPVTLRTKTLADLLESF 1188

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R  +    +   D K++LQ+         K    P Y
Sbjct: 1189 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1248

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            K     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1249 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1295



 Score = 97.5 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 54/109 (49%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F + +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 927  NHNERLEFLGDAVVEFLTSVHLYYLFPTLEEGGLATYRTAIVQNQHLAMLAKKLELERFM 986

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQR 146
              +        S +    A+  E+LI A+YL+G +E A     +     
Sbjct: 987  LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNE 1035


>gi|240013570|ref|ZP_04720483.1| ribonuclease III [Neisseria gonorrhoeae DGI18]
 gi|240112363|ref|ZP_04726853.1| ribonuclease III [Neisseria gonorrhoeae MS11]
 gi|240120639|ref|ZP_04733601.1| ribonuclease III [Neisseria gonorrhoeae PID24-1]
 gi|260441082|ref|ZP_05794898.1| ribonuclease III [Neisseria gonorrhoeae DGI2]
          Length = 239

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 6/206 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F  
Sbjct: 11  HTAIQKKLGYAFRDMSLLRRALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 67

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 68  LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSGGFRRPSILADAMEAMFAA 127

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +  D     A   V   + +R  ++      +D KT LQE   A+    P+Y++  + G 
Sbjct: 128 VSFDADFNTAEKVVRHLFAERVRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGH 187

Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSK 208
             D  F +  ++  L    +    S+
Sbjct: 188 ADDSMFVISCDLGELGFVCRAKGTSR 213


>gi|225024664|ref|ZP_03713856.1| hypothetical protein EIKCOROL_01546 [Eikenella corrodens ATCC
           23834]
 gi|224942553|gb|EEG23762.1| hypothetical protein EIKCOROL_01546 [Eikenella corrodens ATCC
           23834]
          Length = 257

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 62/195 (31%), Positives = 101/195 (51%), Gaps = 5/195 (2%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             L++ +G++F N  L E+ALTH S S    ++ ER EF+GD IL   ++ +LF+ F   
Sbjct: 23  EELQRHLGHSFQNPRLFEQALTHRSYS---AQNNERFEFVGDAILDYSVAKMLFDAFPGY 79

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS    +LV+ +  +++AR + +   + +     K       SI AD VE+L+AA+
Sbjct: 80  SEGELSRLRANLVNQDVLAEIARSMGVGDALYLGVGELKSGGFDRPSILADAVEALLAAI 139

Query: 127 YLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
             D     A   V + + +R   +      +D KT LQE   A+    P+Y++  +SG  
Sbjct: 140 SFDADFAAAEQTVRRLFARRIANIDLSNQGKDPKTLLQEALQARRLPLPKYRIEHQSGEG 199

Query: 185 HDPRFTVVVEISGLA 199
            D RF +  ++  LA
Sbjct: 200 CDARFDIACDLGELA 214


>gi|295425203|ref|ZP_06817906.1| ribonuclease III [Lactobacillus amylolyticus DSM 11664]
 gi|295064979|gb|EFG55884.1| ribonuclease III [Lactobacillus amylolyticus DSM 11664]
          Length = 227

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 67/213 (31%), Positives = 100/213 (46%), Gaps = 9/213 (4%)

Query: 1   MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLIS 56
           M + ++   L ++ G  F N  LLE+A THSS ++ + E    YE+LEFLGD +L L +S
Sbjct: 1   MVSTKFLKQLNEKYGIKFHNEKLLEEAFTHSSYANEHPEGVRDYEKLEFLGDAVLELAVS 60

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+ H+ +  EGEL+   +++V  E  S+ A E      I +     K       ++  
Sbjct: 61  DYLYRHYPNLNEGELTRMRSNIVRTEGFSEFAIECGFQDEINLGKGEEKAGARHRKTLLE 120

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEY 175
           DV E+   ALYLD G++    F+         K      RD KT+LQE       V  EY
Sbjct: 121 DVFEAFNGALYLDQGMKAVTHFLHLTVYPLIDKGEFDASRDYKTDLQELLQKDGPVNIEY 180

Query: 176 KVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCS 207
                S  P H   F V ++I+    +QG   +
Sbjct: 181 VTLSESQLPSH---FVVELKINDHVQSQGEGHN 210


>gi|218259360|ref|ZP_03475110.1| hypothetical protein PRABACTJOHN_00767 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225152|gb|EEC97802.1| hypothetical protein PRABACTJOHN_00767 [Parabacteroides johnsonii
           DSM 18315]
          Length = 286

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 113/231 (48%), Gaps = 13/231 (5%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M+   YS+L K +G+   N  L E+A  H S S    +    + ERLEFLGD IL  +++
Sbjct: 15  MNKEPYSSLYKILGFYPDNIHLYEQAFHHKSSSIESSDGRWLNNERLEFLGDAILDAVVA 74

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
            ++FNHF + +EG L+   + +V  +T ++VA EL L   +  S+     V S    +  
Sbjct: 75  DIVFNHFQNKREGFLTNTRSKIVQRDTLNRVAVELGLEKMVVYSAK----VNSHNNYMYG 130

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTP 173
           + +E+LI A+YLD G EV   F+     ++ +      R   + K+ L EW+        
Sbjct: 131 NALEALIGAIYLDQGYEVCYNFIQNVLIKKYVNLETIARKEVNFKSSLIEWSQKNKLE-I 189

Query: 174 EYKVTFR-SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            + +    +  D +P F   V +S      G+  SK+ ++Q AA   +K+ 
Sbjct: 190 SFDLIESFTDNDGNPVFQTGVTLSDTQIGVGIGYSKKESQQSAAKMAIKKL 240


>gi|8886722|gb|AAF80558.1|AF189011_1 ribonuclease III [Homo sapiens]
          Length = 1374

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 111/227 (48%), Gaps = 10/227 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1106 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1165

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1166 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1224

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY D  +E   TF++  +  R  +    +   D K++LQ+         K    P Y
Sbjct: 1225 IAALYTDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1284

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            K     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1285 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1331



 Score = 97.8 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 54/107 (50%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 963  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDPFM 1022

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
              +        S +    A+  E+LI A+YL+G +E A     +   
Sbjct: 1023 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1069


>gi|57530438|ref|NP_001006379.1| ribonuclease 3 [Gallus gallus]
 gi|53134951|emb|CAG32380.1| hypothetical protein RCJMB04_24a21 [Gallus gallus]
          Length = 1336

 Score =  202 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1068 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1127

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  F  +++D  K   +  T   AD++ES 
Sbjct: 1128 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFA-ITNDKTKRPVALRTKTLADLLESF 1186

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R  +    +   D K++LQ+         K    P Y
Sbjct: 1187 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1246

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            K     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1247 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1293



 Score = 97.5 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 54/107 (50%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F + +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 925  NHNERLEFLGDAVVEFLTSVHLYYLFPTLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 984

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
              +        S +    A+  E+LI A+YL+G +E A     +   
Sbjct: 985  LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1031


>gi|295086176|emb|CBK67699.1| RNAse III [Bacteroides xylanisolvens XB1A]
          Length = 355

 Score =  202 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 65/230 (28%), Positives = 110/230 (47%), Gaps = 15/230 (6%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLIST 57
           +   Y    + +G+   N  L E+AL H S S         + ERLEFLGD IL  ++  
Sbjct: 29  NRESYLCFYRILGFYPRNIQLYEQALLHKSTSVRSDKGRPLNNERLEFLGDAILDAIVGD 88

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
           +++  F+  +EG L+   + +V  ET +++A E+ L   I+ S+       S  + +  +
Sbjct: 89  IVYKRFEGKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGN 144

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPE 174
             E+ I A+YLD G E    F+++    R +   K  R   + K++L EW+     +   
Sbjct: 145 AFEAFIGAIYLDQGYERCKQFMEQRIINRYIDLDKISRKEVNFKSKLIEWSQKN-KMEVS 203

Query: 175 YKVTFRSGPDHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +++  +   DHD  P F   V I GL    G   SK+ ++Q AA   +K+
Sbjct: 204 FELIEQF-LDHDSNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 252


>gi|240016009|ref|ZP_04722549.1| ribonuclease III [Neisseria gonorrhoeae FA6140]
 gi|240115103|ref|ZP_04729165.1| ribonuclease III [Neisseria gonorrhoeae PID18]
          Length = 239

 Score =  202 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 105/206 (50%), Gaps = 6/206 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F  
Sbjct: 11  HTAIQKKLGYAFRDMSLLRRALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 67

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 68  LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSSGFRRPSILADAMEAMFAA 127

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +  D     A   V   + +R  ++      +D KT LQE   A+    P+Y++  + G 
Sbjct: 128 VSFDADFNTAEKVVRHLFAERVRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGH 187

Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSK 208
            +D  F +  ++  L    +    S+
Sbjct: 188 ANDSMFVISCDLGELGFVCRAKGTSR 213


>gi|313147996|ref|ZP_07810189.1| ribonuclease III [Bacteroides fragilis 3_1_12]
 gi|313136763|gb|EFR54123.1| ribonuclease III [Bacteroides fragilis 3_1_12]
          Length = 294

 Score =  202 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 62/227 (27%), Positives = 111/227 (48%), Gaps = 13/227 (5%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59
             Y    + +G+   N  L E+AL H S +   ++    + ERLEFLGD IL  ++  ++
Sbjct: 22  ESYFCFYRILGFYPRNIRLYEQALLHKSTAVRSEKGRPLNNERLEFLGDAILDAIVGDIV 81

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           + HF+  +EG L+   + +V  ET +++A E+ L   I+ S+       S  + +  +  
Sbjct: 82  YQHFEGKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAF 137

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYK 176
           E+ I A+YLD G E    F+ K   +  +   K  R   + K++L EW+     +   ++
Sbjct: 138 EAFIGAIYLDRGYECCKQFMQKKIIEPYIDLDKLSRKEVNFKSKLIEWSQKN-KMEVSFE 196

Query: 177 VTFRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +  +    +++P F   V I G+    G   SK+ ++Q AA   LK+
Sbjct: 197 LIEQFLDKENNPVFQTEVRIEGILGGSGTGYSKKESQQNAAQMALKK 243


>gi|194676595|ref|XP_591998.4| PREDICTED: ribonuclease III, nuclear isoform 2 [Bos taurus]
 gi|297487776|ref|XP_002696436.1| PREDICTED: ribonuclease III, nuclear-like isoform 2 [Bos taurus]
 gi|296475748|gb|DAA17863.1| ribonuclease III, nuclear-like isoform 2 [Bos taurus]
          Length = 1330

 Score =  202 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 111/227 (48%), Gaps = 10/227 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E  IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1062 KLTEFEDAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1121

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1122 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1180

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R  +    +   D K++LQ+         K    P Y
Sbjct: 1181 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1240

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            K     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1241 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1287



 Score = 97.8 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 54/107 (50%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 919  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 978

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
              +        S +    A+  E+LI A+YL+G +E A     +   
Sbjct: 979  LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1025


>gi|37994704|gb|AAH60265.1| Rnasen protein [Mus musculus]
          Length = 1231

 Score =  202 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 963  KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1022

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1023 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1081

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R  +    +   D K++LQ+         K    P Y
Sbjct: 1082 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1141

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            K     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1142 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1188



 Score = 97.5 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 54/107 (50%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
              ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 820 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 879

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
             +        S +    A+  E+LI A+YL+G +E A     +   
Sbjct: 880 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 926


>gi|46190765|ref|ZP_00121069.2| COG0571: dsRNA-specific ribonuclease [Bifidobacterium longum
           DJO10A]
 gi|189439904|ref|YP_001954985.1| ribonuclease III [Bifidobacterium longum DJO10A]
 gi|312133320|ref|YP_004000659.1| rnc [Bifidobacterium longum subsp. longum BBMN68]
 gi|317482014|ref|ZP_07941039.1| ribonuclease III [Bifidobacterium sp. 12_1_47BFAA]
 gi|322688500|ref|YP_004208234.1| ribonuclease III [Bifidobacterium longum subsp. infantis 157F]
 gi|322690510|ref|YP_004220080.1| ribonuclease III [Bifidobacterium longum subsp. longum JCM 1217]
 gi|90101613|sp|Q8G7H1|RNC_BIFLO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|189428339|gb|ACD98487.1| dsRNA-specific ribonuclease [Bifidobacterium longum DJO10A]
 gi|291517392|emb|CBK71008.1| RNAse III [Bifidobacterium longum subsp. longum F8]
 gi|311772536|gb|ADQ02024.1| Rnc [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916581|gb|EFV37978.1| ribonuclease III [Bifidobacterium sp. 12_1_47BFAA]
 gi|320455366|dbj|BAJ65988.1| ribonuclease III [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320459836|dbj|BAJ70456.1| ribonuclease III [Bifidobacterium longum subsp. infantis 157F]
          Length = 242

 Score =  202 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 71/220 (32%), Positives = 106/220 (48%), Gaps = 10/220 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64
           + L + +G   +   LL +ALTH S SH +    +YERLEFLGD +L L+ +  LF    
Sbjct: 13  NELLEALGTTLS-PDLLVQALTHRSFSHEHPGVANYERLEFLGDAVLELVSTETLFTIHP 71

Query: 65  SAKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
              EG+L+      VS +  S +A+ +L +  +I +     +   +   SI  D+VESLI
Sbjct: 72  DMTEGQLAKMRAKAVSEDALSAIAKTKLKVGPYILLGHGEAEQGGAEKNSILCDIVESLI 131

Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A +L+ GI+ A   + +        + +     D KT L   AH      P Y +   S
Sbjct: 132 GATFLEHGIDEARKVIHRLIDDTLAEVATEGPALDWKTSLTVKAHGLGKEEPVYHM-EVS 190

Query: 182 GPDHDPRFTVVVEI--SGLAPAQGMDCSKRAAEQVAAAEV 219
           GP++   FT  V +  +G     G   SKR A Q+AAAE 
Sbjct: 191 GPEYAQIFTARVSLGENGDIIGIGKGSSKRKA-QLAAAEA 229


>gi|296453545|ref|YP_003660688.1| ribonuclease III [Bifidobacterium longum subsp. longum JDM301]
 gi|296182976|gb|ADG99857.1| Ribonuclease III [Bifidobacterium longum subsp. longum JDM301]
          Length = 242

 Score =  202 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 71/220 (32%), Positives = 106/220 (48%), Gaps = 10/220 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64
           + L + +G   +   LL +ALTH S SH +    +YERLEFLGD +L L+ +  LF    
Sbjct: 13  NELLEALGTTLS-PDLLVQALTHRSFSHEHPGVANYERLEFLGDAVLELVSTETLFTIHP 71

Query: 65  SAKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
              EG+L+      VS +  S +A+ +L +  +I +     +   +   SI  D+VESLI
Sbjct: 72  DMTEGQLAKMRAKAVSEDALSAIAKTKLKVGPYILLGHGETEQGGAEKNSILCDIVESLI 131

Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A +L+ GI+ A   + +        + +     D KT L   AH      P Y +   S
Sbjct: 132 GATFLEHGIDEARKVIHRLIDDTLAEVATEGPALDWKTSLTVKAHGLGKDEPVYHM-EVS 190

Query: 182 GPDHDPRFTVVVEI--SGLAPAQGMDCSKRAAEQVAAAEV 219
           GP++   FT  V +  +G     G   SKR A Q+AAAE 
Sbjct: 191 GPEYAQIFTARVSLGENGDIIGIGKGSSKRKA-QLAAAEA 229


>gi|29123082|gb|AAO65849.1| ribonuclease III [Mus musculus]
          Length = 1021

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 753 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 812

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L++  +SLV+  T ++VA EL +  +  V++D  K   +  T   AD++ES 
Sbjct: 813 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-VTNDKTKRPVALRTKTLADLLESF 871

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175
           IAALY+D  +E   TF++  +  R  +    +   D K++LQ+         K    P Y
Sbjct: 872 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 931

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           K     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 932 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 978



 Score = 97.5 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 54/107 (50%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
              ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 610 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 669

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
             +        S +    A+  E+LI A+YL+G +E A     +   
Sbjct: 670 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 716


>gi|255010202|ref|ZP_05282328.1| ribonuclease III [Bacteroides fragilis 3_1_12]
          Length = 290

 Score =  202 bits (515), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 62/227 (27%), Positives = 111/227 (48%), Gaps = 13/227 (5%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59
             Y    + +G+   N  L E+AL H S +   ++    + ERLEFLGD IL  ++  ++
Sbjct: 18  ESYFCFYRILGFYPRNIRLYEQALLHKSTAVRSEKGRPLNNERLEFLGDAILDAIVGDIV 77

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           + HF+  +EG L+   + +V  ET +++A E+ L   I+ S+       S  + +  +  
Sbjct: 78  YQHFEGKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAF 133

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYK 176
           E+ I A+YLD G E    F+ K   +  +   K  R   + K++L EW+     +   ++
Sbjct: 134 EAFIGAIYLDRGYECCKQFMQKKIIEPYIDLDKLSRKEVNFKSKLIEWSQKN-KMEVSFE 192

Query: 177 VTFRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +  +    +++P F   V I G+    G   SK+ ++Q AA   LK+
Sbjct: 193 LIEQFLDKENNPVFQTEVRIEGILGGSGTGYSKKESQQNAAQMALKK 239


>gi|227545817|ref|ZP_03975866.1| ribonuclease III [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|227213933|gb|EEI81772.1| ribonuclease III [Bifidobacterium longum subsp. infantis ATCC
           55813]
          Length = 242

 Score =  202 bits (515), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 71/220 (32%), Positives = 106/220 (48%), Gaps = 10/220 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64
           + L + +G   +   LL +ALTH S SH +    +YERLEFLGD +L L+ +  LF    
Sbjct: 13  NELLEALGTTLS-PDLLVQALTHRSFSHEHPGVANYERLEFLGDAVLELVSTETLFTIHP 71

Query: 65  SAKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
              EG+L+      VS +  S +A+ +L +  +I +     +   +   SI  D+VESLI
Sbjct: 72  DMTEGQLAKMRAKAVSEDALSAIAKTKLKVGPYILLGHGEAEQGGAEKNSILCDIVESLI 131

Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A +L+ GI+ A   + +        + +     D KT L   AH      P Y +   S
Sbjct: 132 GATFLEHGIDEARKVIHRLIDDTLAEVATEGPALDWKTSLTVKAHGLGKEEPVYHM-EVS 190

Query: 182 GPDHDPRFTVVVEI--SGLAPAQGMDCSKRAAEQVAAAEV 219
           GP++   FT  V +  +G     G   SKR A Q+AAAE 
Sbjct: 191 GPEYAQIFTARVSLGENGDTIGIGKGSSKRKA-QLAAAEA 229


>gi|156553364|ref|XP_001601748.1| PREDICTED: similar to ribonuclease iii [Nasonia vitripennis]
          Length = 1381

 Score =  202 bits (515), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 64/228 (28%), Positives = 106/228 (46%), Gaps = 14/228 (6%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F++  LL +A T  S   ++    S +RLEFLGD +L L++S  L+  
Sbjct: 1019 KLTKFEEGIGVEFSHIRLLARAFTDRSIGYTNLTLGSNQRLEFLGDTVLQLIVSEYLYKF 1078

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG LS+  +SLV+ +T + V  +L +  +    +          T  +AD++E+ 
Sbjct: 1079 FPEHHEGHLSLLRSSLVNNKTQAVVCDDLGMTQYALYGNP----KAELKTKDRADLLEAF 1134

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKF------GVTPE 174
            + ALY+D G+     F +  +  R       +   D K++LQ+               P 
Sbjct: 1135 LGALYVDKGLLHCQVFCNVCFFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPV 1194

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YKV    GP +   +TV V   G   A+    S + AE  +A E L++
Sbjct: 1195 YKVIECKGPTNTRVYTVAVYFQGKRLAKASGHSIQEAEMNSAKEALEK 1242



 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 6/137 (4%)

Query: 28   THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
            T SSI+H      ERLEFLGD ++  L S  LF+ F   +EG L+    ++V  +  + +
Sbjct: 870  TESSIAH-----NERLEFLGDAVVEFLTSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVL 924

Query: 88   ARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA 147
            A++L+L  ++  +          +    A+  E+L+ AL+LDGGI +A T   +   +  
Sbjct: 925  AKKLNLEQYMLYAHGSDLCHDLELRHAMANCFEALMGALFLDGGIRIADTVFGETLFKNE 984

Query: 148  LKSGKFRRDA-KTELQE 163
                    +  K  LQE
Sbjct: 985  SDLLNIWVNYPKHPLQE 1001


>gi|239622484|ref|ZP_04665515.1| ribonuclease III [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|239514481|gb|EEQ54348.1| ribonuclease III [Bifidobacterium longum subsp. infantis CCUG
           52486]
          Length = 272

 Score =  202 bits (515), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 71/220 (32%), Positives = 106/220 (48%), Gaps = 10/220 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64
           + L + +G   +   LL +ALTH S SH +    +YERLEFLGD +L L+ +  LF    
Sbjct: 43  NELLEALGTTLS-PDLLVQALTHRSFSHEHPGVANYERLEFLGDAVLELVSTETLFTIHP 101

Query: 65  SAKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
              EG+L+      VS +  S +A+ +L +  +I +     +   +   SI  D+VESLI
Sbjct: 102 DMTEGQLAKMRAKAVSEDALSAIAKTKLKVGPYILLGHGEAEQGGAEKNSILCDIVESLI 161

Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A +L+ GI+ A   + +        + +     D KT L   AH      P Y +   S
Sbjct: 162 GATFLEHGIDEARKVIHRLIDDTLAEVATEGPALDWKTSLTVKAHGLGKEEPVYHM-EVS 220

Query: 182 GPDHDPRFTVVVEI--SGLAPAQGMDCSKRAAEQVAAAEV 219
           GP++   FT  V +  +G     G   SKR A Q+AAAE 
Sbjct: 221 GPEYAQIFTARVSLGENGDIIGIGKGSSKRKA-QLAAAEA 259


>gi|88703551|ref|ZP_01101267.1| ribonuclease III [Congregibacter litoralis KT71]
 gi|88702265|gb|EAQ99368.1| ribonuclease III [Congregibacter litoralis KT71]
          Length = 224

 Score =  202 bits (515), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 75/208 (36%), Positives = 107/208 (51%), Gaps = 8/208 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M A ++  LE++ G    N +LL +AL+H S+      + ERLEFLGD +LG ++S  L+
Sbjct: 1   MDAQQW--LERQFGCRLNNDALLHQALSHRSVG---SRNNERLEFLGDSVLGYVVSEELY 55

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F  A EG+LS    SLV     ++VARE+ L   +R+    R        SI AD  E
Sbjct: 56  RRFPDADEGQLSRLRVSLVKGSALAEVAREITLGEQLRLGVGERHGGGRRRNSILADSFE 115

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +++ A+ LD GIE     + K +  R   LK  + R+D KT LQE         PEY + 
Sbjct: 116 AILGAIVLDLGIEACRAAILKVFHARFEGLKLEQARKDPKTRLQELLQGSGRPLPEYVLR 175

Query: 179 FRSGPDHDPRFTVVVEI-SGLAPAQGMD 205
             +G DH   FTV  E+  G   A+G+ 
Sbjct: 176 KATGEDHARIFTVACELADGREVAEGIG 203


>gi|307298654|ref|ZP_07578457.1| ribonuclease III [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915819|gb|EFN46203.1| ribonuclease III [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 241

 Score =  202 bits (515), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 71/212 (33%), Positives = 110/212 (51%), Gaps = 10/212 (4%)

Query: 19  NRSLLEKALTHSSISHSYQ-------ESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71
           +R L+ +AL HSS ++          ES ER+EFLGD +L L ++  L+N +    EGE+
Sbjct: 22  DRELVFRALCHSSFTNELAQNGERTLESNERMEFLGDAVLELSLAKTLYNEY-YLTEGEM 80

Query: 72  SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131
           S     + S +  S VA+ + +  FI +    R+   +   SI AD  E+++AA++L GG
Sbjct: 81  SKIRAMVGSEKVLSSVAKTMRIGDFIFLGKGERQTGGAERDSILADAFEAVLAAIFLTGG 140

Query: 132 IEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
           + V+  FV         ++  G+   D KT LQE   A+FG  P Y+     GP  +  F
Sbjct: 141 LGVSVEFVQSKLSDYIERAVEGELILDYKTSLQELTQARFGSRPLYETLLDEGPPQEKWF 200

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V V + G    +G   +K+AAEQ+AA   L+
Sbjct: 201 KVGVFLDGSLMGEGEGRTKKAAEQLAAKHALE 232


>gi|224282434|ref|ZP_03645756.1| ribonuclease III [Bifidobacterium bifidum NCIMB 41171]
 gi|310286876|ref|YP_003938134.1| Ribonuclease III [Bifidobacterium bifidum S17]
 gi|311063777|ref|YP_003970502.1| ribonuclease III [Bifidobacterium bifidum PRL2010]
 gi|313139580|ref|ZP_07801773.1| ribonuclease 3 [Bifidobacterium bifidum NCIMB 41171]
 gi|309250812|gb|ADO52560.1| Ribonuclease III [Bifidobacterium bifidum S17]
 gi|310866096|gb|ADP35465.1| RncS Ribonuclease III [Bifidobacterium bifidum PRL2010]
 gi|313132090|gb|EFR49707.1| ribonuclease 3 [Bifidobacterium bifidum NCIMB 41171]
          Length = 255

 Score =  202 bits (515), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 72/220 (32%), Positives = 101/220 (45%), Gaps = 9/220 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
             L   +G   +   LL +ALTH S SH +    +YERLEFLGD +L L+ +  LF    
Sbjct: 8   EELFSALGVTIS-PDLLIQALTHRSFSHEHPGTSNYERLEFLGDAVLELVSTETLFTLHP 66

Query: 65  SAKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
              EG+L+      VS E  S +AR +L +  FI +     +   +  +SI  D+VESLI
Sbjct: 67  DMTEGQLAKMRAKAVSEEALSAIARDKLHVGPFILLGHGEAESGGAEKSSILCDIVESLI 126

Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A +L+ GIE A   V +        + +     D KT L   AH      P Y++   S
Sbjct: 127 GATFLEHGIEGARKVVHRLIDDTLAEVATEGPALDWKTSLTVKAHELGLDEPRYRM-SVS 185

Query: 182 GPDHDPRFTVVVEIS--GLAPAQGMDCSKRAAEQVAAAEV 219
           GP++   FT    I        +G   SKR A+  AA   
Sbjct: 186 GPEYAQEFTAKATIGPKDDIIGKGTGTSKRKAQLAAAEMA 225


>gi|119631174|gb|EAX10769.1| ribonuclease III, nuclear, isoform CRA_b [Homo sapiens]
          Length = 1120

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 852  KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 911

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 912  FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 970

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R  +    +   D K++LQ+         K    P Y
Sbjct: 971  IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1030

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            K     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1031 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1077



 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 54/107 (50%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
              ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 709 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 768

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
             +        S +    A+  E+LI A+YL+G +E A     +   
Sbjct: 769 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 815


>gi|254822109|ref|ZP_05227110.1| ribonuclease III [Mycobacterium intracellulare ATCC 13950]
          Length = 235

 Score =  202 bits (514), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 67/207 (32%), Positives = 102/207 (49%), Gaps = 9/207 (4%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDS 65
            L   +G    +  LL  ALTH S ++ +    + ERLEFLGD +LGL I+  L++    
Sbjct: 6   ALLDALGVELPD-ELLSLALTHRSYAYEHGGLPTNERLEFLGDAVLGLTITDELYHRHPD 64

Query: 66  AKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
             EG+L+    S+V+ +  + V R+L    L   + +         +  +SI AD +ESL
Sbjct: 65  RSEGDLAKLRASVVNTQALADVGRKLCEGGLGVHLLLGRGEANTGGADKSSILADGMESL 124

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFR 180
           + A+YL+ GI+VA   + + +      +       D KT LQE   A+    P Y VT  
Sbjct: 125 LGAIYLEHGIDVAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARSMGAPSYVVTS- 183

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCS 207
           +GPDHD  FT VV ++      G+  S
Sbjct: 184 TGPDHDKEFTAVVVVADTEYGSGVGRS 210


>gi|160333099|ref|NP_001103942.1| ribonuclease 3 [Danio rerio]
 gi|124481653|gb|AAI33135.1| Zgc:158612 [Danio rerio]
          Length = 1289

 Score =  202 bits (514), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 111/227 (48%), Gaps = 10/227 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E  IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1026 KLTNFEDAIGVLFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1085

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  F  +++D  K   +  T   AD++ES 
Sbjct: 1086 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFA-ITNDKTKRPVALRTKTLADLLESF 1144

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R  +    +   D K++LQ+         K    P Y
Sbjct: 1145 IAALYIDKDLEFVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1204

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            K     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1205 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1251



 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/107 (30%), Positives = 56/107 (52%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
              ERLEFLGD ++  L S  L++ F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 883 NHNERLEFLGDAVVEFLTSVHLYHLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 942

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
             +        S +    A+  E+LI A+YL+GG+E A     +   
Sbjct: 943 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGGLEEAKDLFGRLLF 989


>gi|34784428|gb|AAH57687.1| Rnasen protein [Mus musculus]
          Length = 942

 Score =  202 bits (514), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 674 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 733

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 734 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 792

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175
           IAALY+D  +E   TF++  +  R  +    +   D K++LQ+         K    P Y
Sbjct: 793 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 852

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           K     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 853 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 899



 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 54/107 (50%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
              ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 531 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 590

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
             +        S +    A+  E+LI A+YL+G +E A     +   
Sbjct: 591 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 637


>gi|315920801|ref|ZP_07917041.1| ribonuclease III [Bacteroides sp. D2]
 gi|313694676|gb|EFS31511.1| ribonuclease III [Bacteroides sp. D2]
          Length = 330

 Score =  202 bits (514), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 109/228 (47%), Gaps = 15/228 (6%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLL 59
             Y    + +G+   N  L E+AL H S S         + ERLEFLGD IL  ++  ++
Sbjct: 7   ESYLCFYRILGFYPRNIQLYEQALLHKSTSVRSDKGRPLNNERLEFLGDAILDAIVGDIV 66

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  F+  +EG L+   + +V  ET +++A E+ L   I+ S+       S  + +  +  
Sbjct: 67  YKRFEGKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAF 122

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYK 176
           E+ I A+YLD G E    F+++    R +   K  R   + K++L EW+     +   ++
Sbjct: 123 EAFIGAIYLDQGYERCKQFMEQRIINRYIDLDKISRKEVNFKSKLIEWSQKN-KMEVSFE 181

Query: 177 VTFRSGPDHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +  +   DHD  P F   V I GL    G   SK+ ++Q AA   +K+
Sbjct: 182 LIEQF-LDHDSNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 228


>gi|237716739|ref|ZP_04547220.1| ribonuclease III [Bacteroides sp. D1]
 gi|262405515|ref|ZP_06082065.1| ribonuclease III [Bacteroides sp. 2_1_22]
 gi|298480489|ref|ZP_06998686.1| ribonuclease 3 [Bacteroides sp. D22]
 gi|229442722|gb|EEO48513.1| ribonuclease III [Bacteroides sp. D1]
 gi|262356390|gb|EEZ05480.1| ribonuclease III [Bacteroides sp. 2_1_22]
 gi|298273310|gb|EFI14874.1| ribonuclease 3 [Bacteroides sp. D22]
          Length = 331

 Score =  202 bits (514), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 109/228 (47%), Gaps = 15/228 (6%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLL 59
             Y    + +G+   N  L E+AL H S S         + ERLEFLGD IL  ++  ++
Sbjct: 7   ESYLCFYRILGFYPRNIQLYEQALLHKSTSVRSDKGRPLNNERLEFLGDAILDAIVGDIV 66

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  F+  +EG L+   + +V  ET +++A E+ L   I+ S+       S  + +  +  
Sbjct: 67  YKRFEGKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAF 122

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYK 176
           E+ I A+YLD G E    F+++    R +   K  R   + K++L EW+     +   ++
Sbjct: 123 EAFIGAIYLDQGYERCKQFMEQRIINRYIDLDKISRKEVNFKSKLIEWSQKN-KMEVSFE 181

Query: 177 VTFRSGPDHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +  +   DHD  P F   V I GL    G   SK+ ++Q AA   +K+
Sbjct: 182 LIEQF-LDHDSNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 228


>gi|162447098|ref|YP_001620230.1| dsRNA-specific ribonuclease III [Acholeplasma laidlawii PG-8A]
 gi|161985205|gb|ABX80854.1| dsRNA-specific ribonuclease III [Acholeplasma laidlawii PG-8A]
          Length = 219

 Score =  202 bits (514), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 69/218 (31%), Positives = 105/218 (48%), Gaps = 9/218 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDS 65
           + L K++     +  L  +ALTH+S +H  Q +  ERLEFLGD ++ L++ST LF H D 
Sbjct: 2   NDLLKQLNIETKHIDLYLQALTHTSYAHENQTDHNERLEFLGDAVIELMMSTYLFTH-DQ 60

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           + +G L+ R    V  E     A+++DL S +R+ +  +        S+ AD  E+   A
Sbjct: 61  SNQGVLTKRRAQAVREEALVLYAQKMDLESKMRLGNGEQIA----KPSMIADAFEAFFGA 116

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           LY+D G +      +K      L   +  +D KT+LQE+   +      YK     GP H
Sbjct: 117 LYMDQGFDKTYEIFNKVVIPH-LNLVEHIKDYKTQLQEFIQLERKSL-SYKTVKVGGPSH 174

Query: 186 DPRFTVVVEISG-LAPAQGMDCSKRAAEQVAAAEVLKR 222
            P F   V +   +    G   S + AEQ AA E L +
Sbjct: 175 RPIFKSEVFLENSIMLGTGQGSSTKEAEQNAAKEALSK 212


>gi|58337573|ref|YP_194158.1| ribonuclease III [Lactobacillus acidophilus NCFM]
 gi|227904215|ref|ZP_04022020.1| dsRNA-specific ribonuclease RNaseIII [Lactobacillus acidophilus
           ATCC 4796]
 gi|75432899|sp|Q5FJJ7|RNC_LACAC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|58254890|gb|AAV43127.1| dsRNA-specific ribonuclease RNaseIII [Lactobacillus acidophilus
           NCFM]
 gi|227868234|gb|EEJ75655.1| dsRNA-specific ribonuclease RNaseIII [Lactobacillus acidophilus
           ATCC 4796]
          Length = 228

 Score =  201 bits (513), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 66/214 (30%), Positives = 98/214 (45%), Gaps = 10/214 (4%)

Query: 1   MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLI 55
           M + ++ + L+      F N  LLE+A THSS S+ + +     YE+LEFLGD +L L +
Sbjct: 1   MVSTKFLNKLKNEYNIEFNNEKLLEEAFTHSSYSNEHPDDGIRDYEKLEFLGDAVLELAV 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S  L+ H+    EGEL+   +++V  E  S+ A E      I + +   K       ++ 
Sbjct: 61  SNYLYRHYPKLNEGELTRLRSNIVRTEGFSEFAIECGFQKEIHLGNGEEKAGARNRKTLL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPE 174
            DV E+   AL+LD G+     F+         K      RD KT+LQE       V  E
Sbjct: 121 EDVFEAFNGALFLDQGMPAVERFLHLTVYPLIAKGEFDDSRDYKTDLQELLQQNGPVNIE 180

Query: 175 YKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCS 207
           Y V   S  P H   F V ++I+     QG   +
Sbjct: 181 YSVISESQLPSH---FVVELKINDQVQTQGEGHN 211


>gi|213691313|ref|YP_002321899.1| Ribonuclease III [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213522774|gb|ACJ51521.1| Ribonuclease III [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|320457380|dbj|BAJ68001.1| ribonuclease III [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 242

 Score =  201 bits (513), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 71/220 (32%), Positives = 106/220 (48%), Gaps = 10/220 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64
           + L + +G   +   LL +ALTH S SH +    +YERLEFLGD +L L+ +  LF    
Sbjct: 13  NELLEALGTTLS-PDLLVQALTHRSFSHEHPGVANYERLEFLGDAVLELVSTETLFTIHP 71

Query: 65  SAKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
              EG+L+      VS +  S +A+ +L +  +I +     +   +   SI  D+VESLI
Sbjct: 72  DMTEGQLAKMRAKAVSEDALSAIAKTKLKVGPYILLGHGEAEQGGAEKNSILCDIVESLI 131

Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A +L+ GI+ A   + +        + +     D KT L   AH      P Y +   S
Sbjct: 132 GATFLEHGIDEARKVLHRLIDDTLAEVATEGPALDWKTSLTVKAHGLGKEEPVYHM-EVS 190

Query: 182 GPDHDPRFTVVVEI--SGLAPAQGMDCSKRAAEQVAAAEV 219
           GP++   FT  V +  +G     G   SKR A Q+AAAE 
Sbjct: 191 GPEYAQIFTARVSLGENGDIIGIGKGSSKRKA-QLAAAEA 229


>gi|75909289|ref|YP_323585.1| ribonuclease III [Anabaena variabilis ATCC 29413]
 gi|75703014|gb|ABA22690.1| RNAse III [Anabaena variabilis ATCC 29413]
          Length = 228

 Score =  201 bits (513), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 57/197 (28%), Positives = 87/197 (44%), Gaps = 8/197 (4%)

Query: 17  FANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           F +  LL +ALTH S  +   E     ERLEFLGD IL  L    L+       E EL+ 
Sbjct: 7   FRDEKLLRRALTHRSYVNENPEEGEHNERLEFLGDAILNFLSGEYLYRSHPDRGEDELTR 66

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD--GG 131
           R ++LV  +  ++ A E+ L   +R+     +D      ++ +   E++I A YLD    
Sbjct: 67  RRSALVDEKQLAKFAIEVGLDFRMRLGKGAIRDGGYQNPNLLSSTFEAVIGAYYLDNNSN 126

Query: 132 IEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVT-PEYKVTFRSGPDHDPR 188
           IE     ++  ++     +   +   D+K   QEW     G T P+Y     SGP H P 
Sbjct: 127 IEAVRVIIEPLFESVPEQIVVVRSNVDSKNRFQEWVQRNIGPTPPKYLTKQISGPSHAPE 186

Query: 189 FTVVVEISGLAPAQGMD 205
           F   V +      +G+ 
Sbjct: 187 FQAKVLVGEKEYGEGIG 203


>gi|299147039|ref|ZP_07040106.1| ribonuclease 3 [Bacteroides sp. 3_1_23]
 gi|298514924|gb|EFI38806.1| ribonuclease 3 [Bacteroides sp. 3_1_23]
          Length = 355

 Score =  201 bits (513), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 109/228 (47%), Gaps = 15/228 (6%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLL 59
             Y    + +G+   N  L E+AL H S S         + ERLEFLGD IL  ++  ++
Sbjct: 31  ESYLCFYRILGFYPRNIQLYEQALLHKSTSVRSDKGRPLNNERLEFLGDAILDAIVGDIV 90

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  F+  +EG L+   + +V  ET +++A E+ L   I+ S+       S  + +  +  
Sbjct: 91  YKRFEGKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAF 146

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYK 176
           E+ I A+YLD G E    F+++    R +   K  R   + K++L EW+     +   ++
Sbjct: 147 EAFIGAIYLDQGYERCKQFMEQRIINRYIDLDKISRKEVNFKSKLIEWSQKN-KMEVSFE 205

Query: 177 VTFRSGPDHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +  +   DHD  P F   V I GL    G   SK+ ++Q AA   +K+
Sbjct: 206 LIEQF-LDHDSNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 252


>gi|154493472|ref|ZP_02032792.1| hypothetical protein PARMER_02811 [Parabacteroides merdae ATCC
           43184]
 gi|154086682|gb|EDN85727.1| hypothetical protein PARMER_02811 [Parabacteroides merdae ATCC
           43184]
          Length = 301

 Score =  201 bits (512), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 66/231 (28%), Positives = 112/231 (48%), Gaps = 13/231 (5%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
           M+   YS+L K +G+   N  L E+A  H S S    +    + ERLEFLGD +L  +++
Sbjct: 15  MNKEPYSSLYKILGFYPDNIHLYEQAFLHKSSSVESGDGRWLNNERLEFLGDAVLDAVVA 74

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
            +++ HF + +EG L+   + +V  ET ++VA EL L   +  S+ L     S    +  
Sbjct: 75  DIVYKHFQNKREGFLTNTRSKIVQRETMNRVAVELGLDKMVVYSAKL----SSHNNHMYG 130

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTP 173
           + +E+LI A+YLD G EV   F+     ++ +      R   + K+ L EW+        
Sbjct: 131 NALEALIGAIYLDQGYEVCYNFIQNVLIKKHVNLETIARKEVNFKSSLIEWSQKNKLE-I 189

Query: 174 EYKVTFR-SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            + +    +  D +P F   V +S      G+  SK+ ++Q AA   +K+ 
Sbjct: 190 SFDLIESFTDNDGNPVFQTGVTLSDTQIGVGIGYSKKESQQSAAKMAIKKL 240


>gi|7022183|dbj|BAA91511.1| unnamed protein product [Homo sapiens]
          Length = 769

 Score =  201 bits (512), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 501 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 560

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 561 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 619

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175
           IAALY+D  +E   TF++  +  R  +    +   D K++LQ+         K    P Y
Sbjct: 620 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 679

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           K     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 680 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 726



 Score = 96.7 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 54/107 (50%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
              ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 358 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 417

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
             +        S +    A+  E+LI A+YL+G +E A     +   
Sbjct: 418 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 464


>gi|291456081|ref|ZP_06595471.1| ribonuclease III [Bifidobacterium breve DSM 20213]
 gi|291382490|gb|EFE90008.1| ribonuclease III [Bifidobacterium breve DSM 20213]
          Length = 247

 Score =  201 bits (512), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 70/220 (31%), Positives = 104/220 (47%), Gaps = 10/220 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
           + L + +G   +   LL +ALTH S SH +    +YERLEFLGD +L L+ +  LF    
Sbjct: 18  NELLEALGTTIS-PDLLVQALTHRSFSHEHPGVSNYERLEFLGDAVLELVTTETLFTIHP 76

Query: 65  SAKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
              EG+L+      VS +  S +A+ +L +  +I +     +   +   SI  D+VESLI
Sbjct: 77  DMNEGQLAKMRAKAVSEDALSAIAKTKLKVGPYILLGHGEAEQGGAEKNSILCDIVESLI 136

Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A +L+ GI+ A   + +        + +     D KT L   AH      P Y +   S
Sbjct: 137 GATFLEHGIDEARKVIHRLIDDTLAEVATEGPALDWKTSLTVKAHHLGKAEPVYHM-EVS 195

Query: 182 GPDHDPRFTVVVEISG--LAPAQGMDCSKRAAEQVAAAEV 219
           GP++   FT  V +         G   SKR A Q+AAAE 
Sbjct: 196 GPEYAQIFTAKVTLGDNPEIIGTGKGSSKRKA-QLAAAEA 234


>gi|116618659|ref|YP_819030.1| dsRNA-specific ribonuclease [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|122271141|sp|Q03VW5|RNC_LEUMM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|116097506|gb|ABJ62657.1| RNAse III [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 236

 Score =  201 bits (512), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 57/218 (26%), Positives = 101/218 (46%), Gaps = 9/218 (4%)

Query: 1   MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55
           MS   + + + K+   +F + SLL +ALT  +  + + +     Y+RLEFLGD ++ +++
Sbjct: 1   MSQDSFKSYILKKFNISFNDESLLTEALTQRNYLNEHPDEKGRDYQRLEFLGDSVMQMIV 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           +  LF  +    EG+L+    ++V   + +  +R + L   IR+             S+ 
Sbjct: 61  AEYLFKRYPDWHEGQLTEMRIAMVQTRSFAHFSRMVHLNEGIRLGKGEEMSGARDRDSLL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTP 173
            D+ E+ I ALYLD G +V   F+++     A+ +  F R  D K+ LQE    K  V  
Sbjct: 121 EDIWEAFIGALYLDQGADVVRQFLNQTLFA-AIDTDFFDRFIDFKSRLQERLQTKGSVDI 179

Query: 174 EYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRA 210
           +Y+        D+   F   V  +    A+G   S + 
Sbjct: 180 DYQTEKEEQLSDNTQLFEASVSANDKELARGTGKSIKD 217


>gi|153807268|ref|ZP_01959936.1| hypothetical protein BACCAC_01546 [Bacteroides caccae ATCC 43185]
 gi|149130388|gb|EDM21598.1| hypothetical protein BACCAC_01546 [Bacteroides caccae ATCC 43185]
          Length = 329

 Score =  201 bits (512), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 109/227 (48%), Gaps = 13/227 (5%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLL 59
             Y    + +G+   N  L E+AL H S S         + ERLEFLGD IL  ++  ++
Sbjct: 31  ESYLCFYRILGFYPRNIQLYEQALLHKSSSVRSDKGRPLNNERLEFLGDAILDAIVGDIV 90

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  F+  +EG L+   + +V  ET +++A E+ L   I+ S+       S  + +  +  
Sbjct: 91  YKRFEGKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAF 146

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYK 176
           E+ I A+YLD G E    F+++    R +   K  R   + K++L EW+  K  +   ++
Sbjct: 147 EAFIGAIYLDQGYERCKQFMEQRIINRYIDLDKISRKEVNFKSKLIEWSQ-KSKLEVSFE 205

Query: 177 VTFRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +  +    D +P F   V I GL    G   SK+ ++Q AA   +K+
Sbjct: 206 LIEQFLDQDSNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 252


>gi|59800710|ref|YP_207422.1| ribonuclease III [Neisseria gonorrhoeae FA 1090]
 gi|75432565|sp|Q5F9X7|RNC_NEIG1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|59717605|gb|AAW89010.1| putative ribonuclease III [Neisseria gonorrhoeae FA 1090]
          Length = 239

 Score =  201 bits (512), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 6/206 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           ++ ++K++GYAF + SLL +ALTH S    + +  ER EF+GD IL   ++ +LF+ F  
Sbjct: 11  HTAIQKKLGYAFRDMSLLRRALTHRS---HHAKHNERFEFVGDSILNYTVARMLFDAFPK 67

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGELS    SLV+    +++A E+++   + + +   K       SI AD +E++ AA
Sbjct: 68  LTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELKSSGFRRPSILADAMEAMFAA 127

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +  D     A   V   + +R  ++      +D KT LQE   A+    P+Y++  + G 
Sbjct: 128 VSFDADFNTAEKVVRHLFAERVRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGH 187

Query: 184 DHDPRFTVVVEISGLA-PAQGMDCSK 208
             D  F +  ++  L    +    S+
Sbjct: 188 ADDSMFVISCDLGELGFVCRAKGTSR 213


>gi|237720469|ref|ZP_04550950.1| ribonuclease III [Bacteroides sp. 2_2_4]
 gi|229450220|gb|EEO56011.1| ribonuclease III [Bacteroides sp. 2_2_4]
          Length = 328

 Score =  201 bits (512), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 109/228 (47%), Gaps = 15/228 (6%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLL 59
             Y    + +G+   N  L E+AL H S S         + ERLEFLGD IL  ++  ++
Sbjct: 7   ESYLCFYRILGFYPRNIQLYEQALLHKSTSVRSDKGRPLNNERLEFLGDAILDAIVGDIV 66

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  F+  +EG L+   + +V  ET +++A E+ L   I+ S+       S  + +  +  
Sbjct: 67  YKRFEGKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAF 122

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYK 176
           E+ I A+YLD G E    F+++    R +   K  R   + K++L EW+     +   ++
Sbjct: 123 EAFIGAIYLDQGYERCKLFMEQRIINRYIDLDKISRKEVNFKSKLIEWSQKN-KMEVSFE 181

Query: 177 VTFRSGPDHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +  +   DHD  P F   V I GL    G   SK+ ++Q AA   +K+
Sbjct: 182 LIEQF-LDHDSNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 228


>gi|114600835|ref|XP_001157306.1| PREDICTED: ribonuclease III, nuclear isoform 3 [Pan troglodytes]
          Length = 762

 Score =  201 bits (512), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 494 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 553

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 554 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 612

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175
           IAALY+D  +E   TF++  +  R  +    +   D K++LQ+         K    P Y
Sbjct: 613 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 672

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           K     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 673 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 719



 Score = 96.7 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 54/107 (50%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
              ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 351 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 410

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
             +        S +    A+  E+LI A+YL+G +E A     +   
Sbjct: 411 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 457


>gi|227432061|ref|ZP_03914075.1| dsRNA-specific ribonuclease [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227352178|gb|EEJ42390.1| dsRNA-specific ribonuclease [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 236

 Score =  201 bits (512), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 54/217 (24%), Positives = 97/217 (44%), Gaps = 7/217 (3%)

Query: 1   MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55
           MS   + + + K+   +F + SLL +ALT  +  + + +     Y+RLEFLGD ++ +++
Sbjct: 1   MSQDSFKSYILKKFNVSFNDESLLTEALTQRNYLNEHPDEKGRDYQRLEFLGDSVMQMIV 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           +  LF  +    EG+L+    ++V   + +  +R + L   IR+             S+ 
Sbjct: 61  AEYLFKRYPDWHEGQLTEMRIAMVQTRSFAHFSRMVHLNEGIRLGKGEEMSGARDRDSLL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDK-YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174
            D+ E+ I ALYLD G +V   F+++  +            D K+ LQE    K  V  +
Sbjct: 121 EDIWEAFIGALYLDQGADVVRQFLNQTLFAAIDTDFFDHFIDFKSRLQERLQTKGSVDID 180

Query: 175 YKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRA 210
           Y+        D+   F   V  +    A+G   S + 
Sbjct: 181 YQTEKEEQISDNTQLFEASVSANDKELARGTGKSIKD 217


>gi|293446921|ref|ZP_06663343.1| LOW QUALITY PROTEIN: ribonuclease III [Escherichia coli B088]
 gi|291323751|gb|EFE63179.1| LOW QUALITY PROTEIN: ribonuclease III [Escherichia coli B088]
          Length = 182

 Score =  201 bits (511), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 55/169 (32%), Positives = 85/169 (50%), Gaps = 3/169 (1%)

Query: 45  FLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR 104
           FLGD IL  +I+  L++ F    EG++S    +LV   T +++ARE +L   +R+     
Sbjct: 1   FLGDSILSYVIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGEL 60

Query: 105 KDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQ 162
           K       SI AD VE+LI  ++LD  I+     +  +++ R   +  G  ++D KT LQ
Sbjct: 61  KSGGFRRESILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQ 120

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
           E+   +    P Y V    G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 121 EYLQGRHLPLPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 169


>gi|157326505|gb|ABV44384.1| ASL1/DROSHA fusion [Mus musculus]
          Length = 756

 Score =  201 bits (511), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 488 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 547

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 548 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 606

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175
           IAALY+D  +E   TF++  +  R  +    +   D K++LQ+         K    P Y
Sbjct: 607 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 666

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           K     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 667 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 713



 Score = 96.3 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 54/107 (50%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
              ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 345 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 404

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
             +        S +    A+  E+LI A+YL+G +E A     +   
Sbjct: 405 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 451


>gi|160883983|ref|ZP_02064986.1| hypothetical protein BACOVA_01957 [Bacteroides ovatus ATCC 8483]
 gi|156110713|gb|EDO12458.1| hypothetical protein BACOVA_01957 [Bacteroides ovatus ATCC 8483]
          Length = 352

 Score =  201 bits (511), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 109/228 (47%), Gaps = 15/228 (6%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLL 59
             Y    + +G+   N  L E+AL H S S         + ERLEFLGD IL  ++  ++
Sbjct: 31  ESYLCFYRILGFYPRNIQLYEQALLHKSTSVRSDKGRPLNNERLEFLGDAILDAIVGDIV 90

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  F+  +EG L+   + +V  ET +++A E+ L   I+ S+       S  + +  +  
Sbjct: 91  YKRFEGKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAF 146

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYK 176
           E+ I A+YLD G E    F+++    R +   K  R   + K++L EW+     +   ++
Sbjct: 147 EAFIGAIYLDQGYERCKLFMEQRIINRYIDLDKISRKEVNFKSKLIEWSQKN-KMEVSFE 205

Query: 177 VTFRSGPDHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +  +   DHD  P F   V I GL    G   SK+ ++Q AA   +K+
Sbjct: 206 LIEQF-LDHDSNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 252


>gi|27552890|gb|AAH41162.1| RNASEN protein [Homo sapiens]
          Length = 722

 Score =  201 bits (511), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 454 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 513

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 514 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 572

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175
           IAALY+D  +E   TF++  +  R  +    +   D K++LQ+         K    P Y
Sbjct: 573 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 632

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           K     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 633 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 679



 Score = 96.3 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 54/107 (50%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
              ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 311 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 370

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
             +        S +    A+  E+LI A+YL+G +E A     +   
Sbjct: 371 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 417


>gi|118462414|ref|YP_882955.1| ribonuclease III [Mycobacterium avium 104]
 gi|254776229|ref|ZP_05217745.1| ribonuclease III [Mycobacterium avium subsp. avium ATCC 25291]
 gi|118163701|gb|ABK64598.1| ribonuclease III [Mycobacterium avium 104]
          Length = 237

 Score =  201 bits (511), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 67/206 (32%), Positives = 102/206 (49%), Gaps = 9/206 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           L   +G    +  LL  ALTH S ++ +    + ERLEFLGD +LGL I+  L++     
Sbjct: 7   LLDALGVELPD-ELLSLALTHRSYAYEHGGLPTNERLEFLGDAVLGLTITDALYHRHPDR 65

Query: 67  KEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            EG+L+    S+V+ +  + VAR+L    L + + +         +  +SI AD +ESL+
Sbjct: 66  TEGDLAKLRASVVNTQALADVARKLCDGGLGAHLLLGRGEANTGGADKSSILADGMESLL 125

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+YL  GI+ A   + + +      +       D KT LQE   A+    P Y VT  +
Sbjct: 126 GAIYLQHGIDTAREVILRLFGALLDAAPTLGAGLDWKTSLQELTAARGMGAPSYLVTS-T 184

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCS 207
           GPDHD  FT VV ++      G+  S
Sbjct: 185 GPDHDKEFTAVVVVADTEYGTGVGRS 210


>gi|33585614|gb|AAH55696.1| Rnasen protein [Mus musculus]
          Length = 780

 Score =  201 bits (511), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 512 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 571

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 572 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 630

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175
           IAALY+D  +E   TF++  +  R  +    +   D K++LQ+         K    P Y
Sbjct: 631 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 690

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           K     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 691 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 737



 Score = 96.3 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 54/107 (50%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
              ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 369 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 428

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
             +        S +    A+  E+LI A+YL+G +E A     +   
Sbjct: 429 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 475


>gi|288817568|ref|YP_003431915.1| ribonuclease III [Hydrogenobacter thermophilus TK-6]
 gi|288786967|dbj|BAI68714.1| ribonuclease III [Hydrogenobacter thermophilus TK-6]
 gi|308751168|gb|ADO44651.1| ribonuclease III [Hydrogenobacter thermophilus TK-6]
          Length = 232

 Score =  201 bits (511), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 71/214 (33%), Positives = 107/214 (50%), Gaps = 9/214 (4%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           GY F ++ LLE+ALTH S +     +SYE LEFLGD ++ L +  +L   F  AKEG+L+
Sbjct: 17  GYTFRDKKLLEQALTHKSYAVEKGVKSYETLEFLGDALINLFVVDILLQEFPQAKEGQLA 76

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                 VS E   Q+A+EL       +    +K       SI  D  ESL  A+Y+D G 
Sbjct: 77  PMKAFFVSEEFLHQLAQEL--ELEKYLLLGGKKGKFKVNVSILGDAFESLWGAIYIDTGR 134

Query: 133 EV--AGTFVDKYWKQRALKSG---KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           +     +  ++ +K R +       +++D KT LQE    ++   P Y+V   SGP H  
Sbjct: 135 DTNFTRSLFERLYKNRIITMARSSDYKKDYKTILQEITQKRWKERPTYRVVSVSGPQHGK 194

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            F V   +  +  A     +K+ AEQ++A  VL+
Sbjct: 195 VFEVECSVRNIR-AVAAGSNKKEAEQLSAKRVLE 227


>gi|170017643|ref|YP_001728562.1| dsRNA-specific ribonuclease [Leuconostoc citreum KM20]
 gi|238688973|sp|B1N016|RNC_LEUCK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|169804500|gb|ACA83118.1| dsRNA-specific ribonuclease [Leuconostoc citreum KM20]
          Length = 233

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 57/218 (26%), Positives = 94/218 (43%), Gaps = 9/218 (4%)

Query: 1   MSALRYST-LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55
           MS   +   L       F N +LL +ALT  +  + + +     Y+RLEFLGD ++ + +
Sbjct: 1   MSQDSFKQYLLSEFNIQFNNETLLLEALTQRNYLNEHPDEPGRDYQRLEFLGDSVMQVSV 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           +  LF  + +  EG+L+    ++V   + +  +R   L   IR+             S+ 
Sbjct: 61  AEYLFKRYPNWHEGQLTEMRIAMVQTRSFAHFSRVAHLNEGIRLGKGEEMSGARDRDSLL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTP 173
            D+ E+ I ALYLD G E    F+D+     A+ +  F R  D K+ LQE       V  
Sbjct: 121 EDIWEAFIGALYLDQGFEAVRKFLDQTLFA-AVDTDFFDRFIDFKSRLQEKLQKNGAVDI 179

Query: 174 EYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRA 210
           +Y+        H+   F   V +     A+G   S + 
Sbjct: 180 DYRTENEQQLSHNAQLFEASVSVDDHELARGTGKSIKD 217


>gi|186681704|ref|YP_001864900.1| ribonuclease III [Nostoc punctiforme PCC 73102]
 gi|186464156|gb|ACC79957.1| ribonuclease III [Nostoc punctiforme PCC 73102]
          Length = 239

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 65/222 (29%), Positives = 115/222 (51%), Gaps = 10/222 (4%)

Query: 5   RYSTLEKRIGYA---FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +  +L +++G +        LL+ ALTH ++S S   +YE+LEF+GD ++ L+ + +L+ 
Sbjct: 11  QLESLVQKLGLSREAPIKWELLDLALTHPTVSDSA--NYEQLEFVGDAVVRLVSAVVLWE 68

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           ++     G+ +   + LVS    +Q+AR   L  ++ V+     D      S  AD  E+
Sbjct: 69  NYPDCPVGDFAAIRSVLVSDRILAQLARIYGLELYLLVAGSATADKVGQ-ESRLADAFEA 127

Query: 122 LIAALYLD-GGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++ ALYL    +E+  +++D ++++    ++    R + K  LQEW  A+F V PEY+V 
Sbjct: 128 VLGALYLSTQNLELIRSWLDPHFQELTTEIRLDPARLNYKAALQEWTQAQFKVLPEYRVV 187

Query: 179 FRSGPDHDP-RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
             + P H+  RF   V + G    +G   S + AEQ AA   
Sbjct: 188 EVTQPHHNQERFMAEVWLHGKKLGEGKGRSIKTAEQAAAKVA 229


>gi|283769480|ref|ZP_06342376.1| ribonuclease III [Bulleidia extructa W1219]
 gi|283103748|gb|EFC05134.1| ribonuclease III [Bulleidia extructa W1219]
          Length = 226

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 53/210 (25%), Positives = 93/210 (44%), Gaps = 8/210 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFN 61
           +         G    +  L+E+ALTHSS ++ +  +   ERLEF+GD +L L  S  ++ 
Sbjct: 1   MDIHNFLTAQGIKVDHFELIEQALTHSSYANEHGSKADNERLEFMGDAVLQLWSSAQIYP 60

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
              +  EG+++   + LV     +  +R+L L  +IR+             +I AD +E+
Sbjct: 61  L--NLSEGQMTRLRSQLVCESALANYSRQLGLNQYIRLGKGEEHSGGREKDAIIADALEA 118

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF----RRDAKTELQEWAHAKFGVTPEYKV 177
            + AL+LD G+      + +       ++ +     + D KT LQE   A    +  Y++
Sbjct: 119 FLGALFLDQGMLAVDLILRQVITPHLQQAKEIVQGVQLDYKTRLQEVVQADSRRSLVYQL 178

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
               GP + P F +   + GL    G   S
Sbjct: 179 VSEKGPSNAPTFMMNAVVDGLVLGTGSGGS 208


>gi|41409093|ref|NP_961929.1| ribonuclease III [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|81413486|sp|Q73VL8|RNC_MYCPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|41397452|gb|AAS05312.1| Rnc [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 237

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 67/206 (32%), Positives = 102/206 (49%), Gaps = 9/206 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           L   +G    +  LL  ALTH S ++ +    + ERLEFLGD +LGL I+  L++     
Sbjct: 7   LLDALGVELPD-ELLSLALTHRSYAYEHGGLPTNERLEFLGDAVLGLTITDALYHRHPDR 65

Query: 67  KEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            EG+L+    S+V+ +  + VAR+L    L + + +         +  +SI AD +ESL+
Sbjct: 66  TEGDLAKLRASVVNTQALADVARKLCDGGLGAHLLLGRGEANTGGADKSSILADGMESLL 125

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A+YL  GI+ A   + + +      +       D KT LQE   A+    P Y VT  +
Sbjct: 126 GAIYLQHGIDTAREVILRLFGALLDAAPTLGAGLDWKTSLQELTAARGMGAPSYLVTS-T 184

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCS 207
           GPDHD  FT VV ++      G+  S
Sbjct: 185 GPDHDKEFTAVVVVADTEYGTGVGRS 210


>gi|320541047|ref|ZP_08040477.1| RNase III [Serratia symbiotica str. Tucson]
 gi|320028891|gb|EFW11140.1| RNase III [Serratia symbiotica str. Tucson]
          Length = 172

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 56/168 (33%), Positives = 84/168 (50%), Gaps = 3/168 (1%)

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L+  F    EG++S    +LV   T +++ARE DL   +R+     K   S   SI AD 
Sbjct: 2   LYQRFPHIDEGDMSRMRATLVRGHTLAEMAREFDLGECLRLGPGELKSGGSRRESILADT 61

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           VE+LI  ++LD  ++     +  +++ R   +  G  ++D KT LQE         P Y 
Sbjct: 62  VEALIGGVFLDSDMQRVERLILDWYRSRLDEISPGDKQKDPKTRLQELLQGHHLPLPSYL 121

Query: 177 VTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEVLKRE 223
           V    G  HD  FT+  ++SGL  P  G+  S+R AEQ AA + LK+ 
Sbjct: 122 VVQVRGEAHDQEFTIHCQVSGLNEPVMGIGSSRRKAEQAAAEQTLKKL 169


>gi|73953916|ref|XP_868245.1| PREDICTED: similar to Ribonuclease III (RNase III) (Drosha) (p241)
           isoform 6 [Canis familiaris]
          Length = 635

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 367 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 426

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 427 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 485

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175
           IAALY+D  +E   TF++  +  R  +    +   D K++LQ+         K    P Y
Sbjct: 486 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 545

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           K     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 546 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 592



 Score = 96.3 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 54/107 (50%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
              ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 224 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 283

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
             +        S +    A+  E+LI A+YL+G +E A     +   
Sbjct: 284 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 330


>gi|284022406|gb|ADB65770.1| drosha [Marsupenaeus japonicus]
          Length = 400

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 103/226 (45%), Gaps = 14/226 (6%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
             S  E+ IG  F +  LL +A T  S   ++    S +RLEFLGD +L L+ S  L+ +
Sbjct: 141 NLSKFEESIGVHFNHIRLLARAFTDRSIGFNNLTLGSNQRLEFLGDTVLQLVASEYLYKY 200

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG LS+  +SLV+  T + V  +L + ++   S           T  +AD++E+ 
Sbjct: 201 FPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMTAYTMYS----HLKTELKTKDRADLLEAF 256

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKF------GVTPE 174
           + ALY+D G++    F    +  R  +    +   D K++LQ+               P 
Sbjct: 257 LGALYIDRGLDYCRAFCQVCFFPRLHQFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPI 316

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           YKV    GP +   +TV V   G   A+    S + AE  AA E L
Sbjct: 317 YKVIECKGPTNTRVYTVAVYFRGRRLAKASGHSIQQAEMNAAREAL 362



 Score = 84.7 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 51/115 (44%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102
            EF GD ++  L S  LF+ F S +EG L+    ++V  +  + +A +L L  F+  +  
Sbjct: 2   FEFFGDAVVEFLTSIHLFHLFPSLEEGGLATYRAAIVQNQHLAVLAEKLGLDQFMLYAHG 61

Query: 103 LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
                   +    A+  E+L+ A++LD GIE A + +     Q          + 
Sbjct: 62  SDLCHDFELRHAMANCFEALMGAIFLDTGIEDADSVLSSTLFQGEDLLHSIWVNY 116


>gi|165973380|ref|NP_001107152.1| drosha, ribonuclease type III [Xenopus (Silurana) tropicalis]
 gi|163916533|gb|AAI57521.1| rnasen protein [Xenopus (Silurana) tropicalis]
          Length = 1325

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 110/227 (48%), Gaps = 10/227 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +  T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1061 KLTKFEEAIGVEFTHVRLLARVFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1120

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  F  +++D  K      T   AD++ES 
Sbjct: 1121 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFA-ITNDKTKRPVVLRTKTLADLLESF 1179

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R  +    +   D K++LQ+         K    P Y
Sbjct: 1180 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1239

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            K     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 1240 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1286



 Score = 97.5 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 54/107 (50%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F   +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 918  NHNERLEFLGDAVVEFLTSVHLYYLFPLLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 977

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
              +        S +    A+  E+L+ A+YL+GG+E A     +   
Sbjct: 978  LYAHGPDLCRESDLRHAMANCFEALMGAVYLEGGLEEAKQLFGRLLF 1024


>gi|315038614|ref|YP_004032182.1| ribonuclease III [Lactobacillus amylovorus GRL 1112]
 gi|312276747|gb|ADQ59387.1| ribonuclease III [Lactobacillus amylovorus GRL 1112]
          Length = 228

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 67/214 (31%), Positives = 98/214 (45%), Gaps = 10/214 (4%)

Query: 1   MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55
           M + ++   L+      F N  LLE+A THSS S+ + +     YE+LEFLGD +L L +
Sbjct: 1   MVSTKFLKKLKDEYNVKFNNEKLLEEAFTHSSYSNEHPDAGIRDYEKLEFLGDAVLELAV 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S  L+ H+    EGEL+   +++V  E  S+ A E      I + +   K       ++ 
Sbjct: 61  SNYLYRHYPKLNEGELTRLRSNIVRTEGFSEFAIECGFQKEIHLGNGEEKAGARNRKTLL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPE 174
            DV E+   ALYLD G+     F+         K      RD KT+LQE       V  E
Sbjct: 121 EDVFEAFNGALYLDQGMPAVEHFLHLTVYPLIDKGEFDDSRDYKTDLQELLQQNGPVNIE 180

Query: 175 YKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCS 207
           Y V   S  P H   F V ++I+  A  +G   +
Sbjct: 181 YSVISESQLPSH---FEVELKINDEAKTRGEGHN 211


>gi|260907271|ref|ZP_05915593.1| ribonuclease III [Brevibacterium linens BL2]
          Length = 234

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 59/211 (27%), Positives = 86/211 (40%), Gaps = 6/211 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58
           M     + L+K +G    +      ALTH S +       + ERLEFLGD +LGL+ +  
Sbjct: 1   MDTDTTAELQKSLGIDI-DPETFRLALTHRSFAFEAGGIPTNERLEFLGDSVLGLVATES 59

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L+       EG L+   +++V+    + +AR   +   I +             SI AD 
Sbjct: 60  LYYDNPDLAEGSLAKMRSAVVNTRALASIARRHGIGPHILLGKGEELTGGRDKDSILADT 119

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYK 176
           VE+LI A ++  G E A  FV +        +       D KT LQE A         Y+
Sbjct: 120 VEALIGATFVARGREEAFAFVHRLIDSMLSDAVNLGAGMDYKTTLQEAAADLDLGAVSYE 179

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           +   SGPDH   FT    +       G   S
Sbjct: 180 IVS-SGPDHAMVFTATALLGANGWGTGDGSS 209


>gi|311115015|ref|YP_003986236.1| ribonuclease III [Gardnerella vaginalis ATCC 14019]
 gi|310946509|gb|ADP39213.1| ribonuclease III [Gardnerella vaginalis ATCC 14019]
          Length = 298

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 67/221 (30%), Positives = 103/221 (46%), Gaps = 11/221 (4%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDS 65
            L + +G   +   LL +ALTH S SH +   ++YERLEFLGD +L L+ +  LF+    
Sbjct: 64  ELLRALGTTIS-PDLLVEALTHRSFSHEHPGTKNYERLEFLGDAVLELVSTETLFSAHPD 122

Query: 66  AKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             EG+L+      VS    S VAR +L +  +I +     +   +   SI  D+VE+LI 
Sbjct: 123 MTEGQLAKLRAKAVSEWALSAVARDKLHVGPYILLGHGEMEHGGAQKDSILCDIVEALIG 182

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A +++ GI+ A   V +       +  +     D KT L   AH      P+Y++   SG
Sbjct: 183 ATFVEHGIDEARAVVHRLIDDTLAEVLTEGPALDWKTSLTVLAHEMGLDEPQYRM-SVSG 241

Query: 183 PDHDPRFTVVVEI----SGLAPAQGMDCSKRAAEQVAAAEV 219
           PD+ P F     +          +    SKR A+  AA + 
Sbjct: 242 PDYAPVFHARAVLAHESGDELLGEADGSSKRKAQLAAADKA 282


>gi|158297080|ref|XP_555381.3| AGAP008087-PA [Anopheles gambiae str. PEST]
 gi|157015023|gb|EAL39656.3| AGAP008087-PA [Anopheles gambiae str. PEST]
          Length = 1404

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 101/227 (44%), Gaps = 14/227 (6%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
             +  E  IG  F +  LL +A T  S   ++    S +RLEFLGD +L L+ S  L+ HF
Sbjct: 950  LTRFEDSIGVQFNHIRLLARAFTDRSIGFTNLTLGSNQRLEFLGDTVLQLICSEYLYRHF 1009

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
                EG LS+  +SLV+  T + V  +L +  +   S+          T  +AD++E+ +
Sbjct: 1010 PEHHEGHLSLLRSSLVNNRTQAVVCDDLGMTQYAVYSNP----KADLKTKDRADLLEAFL 1065

Query: 124  AALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKF------GVTPEY 175
             ALY+D G+E    F       R       +   D K++LQ+               P Y
Sbjct: 1066 GALYVDKGLEYCEMFCHVCLFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPVY 1125

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            KV   +GP +   ++V V   G   A     S + AE  AA + L+ 
Sbjct: 1126 KVIECTGPTNTRVYSVAVYFRGKRLACADGHSIQQAEMNAAKQALEN 1172



 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/215 (23%), Positives = 77/215 (35%), Gaps = 56/215 (26%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSS--------------------------------- 31
             + LE+ IGY F NR  L+ ALTH S                                 
Sbjct: 717 SLNVLERYIGYTFTNRYTLQLALTHPSYKENFGTNPDHARNSLTNCGIRQPEYGDRKIHY 776

Query: 32  -----------------ISHSYQES-----YERLEFLGDRILGLLISTLLFNHFDSAKEG 69
                                ++        ERLEFLGD ++  + S  LF+ F   +EG
Sbjct: 777 MNTRKRGINTLISIMSRFGKEHETDSNITHNERLEFLGDAVVEFITSIHLFHMFPDLEEG 836

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
            L+    ++V  +  + +A++L L  F+  +          +    A+  E+L+ AL LD
Sbjct: 837 GLATYRAAIVQNQHLAVLAKKLHLEEFMLYAHGSDLCHELELRHALANCFEALMGALLLD 896

Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKT-ELQE 163
           GGIEVA         Q          +  +  LQE
Sbjct: 897 GGIEVADRVFAYALFQEDDTLRGIWVNYPSHPLQE 931


>gi|4768838|gb|AAD29637.1|AF116910_1 putative ribonuclease III [Homo sapiens]
          Length = 541

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 273 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 332

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 333 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 391

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175
           IAALY+D  +E   TF++  +  R  +    +   D K++LQ+         K    P Y
Sbjct: 392 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 451

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           K     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 452 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 498



 Score = 95.9 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 54/107 (50%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
              ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 130 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 189

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
             +        S +    A+  E+LI A+YL+G +E A     +   
Sbjct: 190 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 236


>gi|325957095|ref|YP_004292507.1| ribonuclease III [Lactobacillus acidophilus 30SC]
 gi|325333660|gb|ADZ07568.1| ribonuclease III [Lactobacillus acidophilus 30SC]
 gi|327183818|gb|AEA32265.1| ribonuclease III [Lactobacillus amylovorus GRL 1118]
          Length = 228

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 67/214 (31%), Positives = 98/214 (45%), Gaps = 10/214 (4%)

Query: 1   MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLI 55
           M + ++   L+      F N  LLE+A THSS S+ + +     YE+LEFLGD +L L +
Sbjct: 1   MVSTKFLKKLKDEYNVKFNNEKLLEEAFTHSSYSNEHPDAGIRDYEKLEFLGDAVLELAV 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S  L+ H+    EGEL+   +++V  E  S+ A E      I + +   K       ++ 
Sbjct: 61  SNYLYRHYPKLNEGELTRLRSNIVRTEGFSEFAIECGFQKEIHLGNGEEKAGARSRKTLL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPE 174
            DV E+   ALYLD G+     F+         K      RD KT+LQE       V  E
Sbjct: 121 EDVFEAFNGALYLDQGMPAVEHFLHLTVYPLIDKGEFDDSRDYKTDLQELLQQNGPVNIE 180

Query: 175 YKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCS 207
           Y V   S  P H   F V ++I+  A  +G   +
Sbjct: 181 YSVISESQLPSH---FEVELKINDEAKTRGEGHN 211


>gi|194246455|ref|YP_002004094.1| DsRNA-specific ribonuclease [Candidatus Phytoplasma mali]
 gi|259491959|sp|B3R075|RNC_PHYMT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|193806812|emb|CAP18239.1| DsRNA-specific ribonuclease [Candidatus Phytoplasma mali]
          Length = 225

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 99/206 (48%), Gaps = 7/206 (3%)

Query: 19  NRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
             SL + ++THSS ++  +   +  ERLEFLGD ++ LL++  L+   +   EG +S + 
Sbjct: 15  QISLYKMSITHSSYANENKLKKKDNERLEFLGDAVINLLMADYLYTKKEKENEGFMSKKR 74

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
              V  ++    A+ + L ++I +    +    +   SI A+  E+L  A+YLD G  +A
Sbjct: 75  AQSVCEDSLVIYAKSIQLQNYILLGKGEKN--KNINNSILANAFEALFGAIYLDLGYYIA 132

Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
                     R L +     D KT+LQE   ++   T  Y +T   G DH   FT  V +
Sbjct: 133 KKVFILIVIPR-LSNIIDNIDFKTQLQELVQSQKK-TISYYITEEKGLDHSKEFTAEVFL 190

Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLK 221
                 +G   +K++AEQ AA  VL 
Sbjct: 191 EKKNVGRGFGKTKKSAEQDAARYVLN 216


>gi|321475336|gb|EFX86299.1| hypothetical protein DAPPUDRAFT_442 [Daphnia pulex]
          Length = 939

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 105/228 (46%), Gaps = 14/228 (6%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           +    E+ IG  F +  LL +A T  S   ++    S +RLEFLGD +L L+ S  L+  
Sbjct: 700 KMVEFEESIGIKFTHIRLLARAFTDRSIGFNNLTLGSNQRLEFLGDTVLQLIASEYLYKF 759

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG LS+  +SLV+  T + V  +L + ++   SS          T  +AD++E+ 
Sbjct: 760 FPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMTNYALYSSP----KAELKTKDRADLLEAF 815

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKF------GVTPE 174
           + ALY+D G+E   TF    +  R       +   D K++LQ+               P 
Sbjct: 816 LGALYVDKGLEDCQTFCQVCFFPRLQDFILHQDWNDPKSKLQQCCLTLRTMDGGEPDIPV 875

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           YKV    GP +   ++V V   G+  A     S + AE  AA E L++
Sbjct: 876 YKVIECKGPTNTRVYSVAVYFRGIRLASASGHSIQQAEMNAAKEALEK 923



 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 8/144 (5%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
           T SSI+H      ERLEFLGD ++  L S  L++ F   +EG L+    ++V  +  +Q+
Sbjct: 551 TESSITH-----NERLEFLGDAVVEFLASIHLYHMFPDLEEGGLATYRAAIVQNQHLAQL 605

Query: 88  ARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA 147
           A+ L L  F+  +          +    A+  E+L+ AL+LDGGI VA            
Sbjct: 606 AKNLQLDQFMLYAHGSDLCHDLELRHAMANCFEALMGALFLDGGINVADRVFSNTLFMNE 665

Query: 148 LKSGKFRRDAKT-ELQEWAHAKFG 170
                   +  +  LQE      G
Sbjct: 666 KDLLDVWVNYPSHPLQE--QELGG 687


>gi|308235889|ref|ZP_07666626.1| ribonuclease III [Gardnerella vaginalis ATCC 14018]
          Length = 309

 Score =  199 bits (506), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 67/221 (30%), Positives = 103/221 (46%), Gaps = 11/221 (4%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDS 65
            L + +G   +   LL +ALTH S SH +   ++YERLEFLGD +L L+ +  LF+    
Sbjct: 75  ELLRALGTTIS-PDLLVEALTHRSFSHEHPGTKNYERLEFLGDAVLELVSTETLFSAHPD 133

Query: 66  AKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             EG+L+      VS    S VAR +L +  +I +     +   +   SI  D+VE+LI 
Sbjct: 134 MTEGQLAKLRAKAVSEWALSAVARDKLHVGPYILLGHGEMEHGGAQKDSILCDIVEALIG 193

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A +++ GI+ A   V +       +  +     D KT L   AH      P+Y++   SG
Sbjct: 194 ATFVEHGIDEARAVVHRLIDDTLAEVLTEGPALDWKTSLTVLAHEMGLDEPQYRM-SVSG 252

Query: 183 PDHDPRFTVVVEI----SGLAPAQGMDCSKRAAEQVAAAEV 219
           PD+ P F     +          +    SKR A+  AA + 
Sbjct: 253 PDYAPVFHARAVLAHESGDELLGEADGSSKRKAQLAAADKA 293


>gi|161507714|ref|YP_001577671.1| ribonuclease III [Lactobacillus helveticus DPC 4571]
 gi|260101401|ref|ZP_05751638.1| ribonuclease III [Lactobacillus helveticus DSM 20075]
 gi|160348703|gb|ABX27377.1| Double stranded RNA-specific ribonuclease RNase [Lactobacillus
           helveticus DPC 4571]
 gi|260084741|gb|EEW68861.1| ribonuclease III [Lactobacillus helveticus DSM 20075]
 gi|323466305|gb|ADX69992.1| Double stranded RNA-specific ribonuclease RNase [Lactobacillus
           helveticus H10]
          Length = 228

 Score =  199 bits (506), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 66/214 (30%), Positives = 97/214 (45%), Gaps = 10/214 (4%)

Query: 1   MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQES----YERLEFLGDRILGLLI 55
           M + ++   L+      F N  LLE+A THSS S+ +       YE+LEFLGD +L L +
Sbjct: 1   MVSTKFLKKLKDEYSIEFNNEKLLEEAFTHSSYSNEHPNDGIRDYEKLEFLGDAVLELAV 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S  L+ H+    EGEL+   +++V  E  S+ A E    + I + +   K       ++ 
Sbjct: 61  SDYLYRHYPKLNEGELTRLRSNIVRTEGFSEFAIECGFQNEIHLGNGEEKAGARKRKTLL 120

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPE 174
            DV E+   AL+LD G+     F+         K      RD KT+LQE       V  E
Sbjct: 121 EDVFEAFNGALFLDQGMPAVQHFLHLTVYPLIDKGEFDDSRDYKTDLQELLQQNGPVNIE 180

Query: 175 YKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCS 207
           Y V   S  P H   F V ++I+     QG   +
Sbjct: 181 YSVISESQLPPH---FVVELKINDQVQTQGEGHN 211


>gi|121610179|ref|YP_997986.1| ribonuclease III [Verminephrobacter eiseniae EF01-2]
 gi|189043373|sp|A1WMW1|RNC_VEREI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|121554819|gb|ABM58968.1| RNAse III [Verminephrobacter eiseniae EF01-2]
          Length = 247

 Score =  199 bits (506), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 78/229 (34%), Positives = 110/229 (48%), Gaps = 26/229 (11%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            L++R+ + F++  LLE+A TH S S  +    ERLEFLGD +L L +S+LL+    +  
Sbjct: 7   ALQERLQHVFSDPGLLERATTHRSFSAEH---NERLEFLGDSVLNLAVSSLLYQRLSALP 63

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVS--------------------SDLRKDV 107
           EGELS    +LV  E+  Q+A  L LA  +R+                      D     
Sbjct: 64  EGELSRVRANLVRQESLYQLALRLPLAQALRLGESLSGNRQRRSRRRCADELQPDEAGSG 123

Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWA 165
                SI AD +E+LI A+YLD G   A   V + ++   +        RDAKT LQEW 
Sbjct: 124 GLQHPSILADALEALIGAVYLDAGYASAQALVQRLFQDVEISPRMQAAARDAKTALQEWL 183

Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQ 213
            ++    P+Y+V  R G  H P F V   I  L   + G   S++A EQ
Sbjct: 184 ASRKMKPPQYQVVARVGAAHCPTFEVACGIPALGLTERGSAGSRQAGEQ 232


>gi|260642610|ref|ZP_05416578.2| ribonuclease III [Bacteroides finegoldii DSM 17565]
 gi|260621352|gb|EEX44223.1| ribonuclease III [Bacteroides finegoldii DSM 17565]
          Length = 270

 Score =  199 bits (506), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 62/227 (27%), Positives = 109/227 (48%), Gaps = 13/227 (5%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59
             Y    + +G+   N  L E+AL H S S   ++    + ERLEFLGD IL  ++  ++
Sbjct: 18  ESYLCFYRILGFYPRNIQLYEQALLHKSTSLRSEKGRPLNNERLEFLGDAILDAIVGDIV 77

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           + HF+  +EG L+   + +V  ET +++A E+ L   I+ S+       S  + +  +  
Sbjct: 78  YKHFEGKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAF 133

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYK 176
           E+ I A+YLD G E    F+++    R +      R   + K++L EW+     +   ++
Sbjct: 134 EAFIGAIYLDQGYERCKQFMEERIINRYIDLDILSRKEVNFKSKLIEWSQKN-KMEVSFE 192

Query: 177 VTFRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +  +    D +P F   V I G     G   SK+ ++Q AA   +K+
Sbjct: 193 LIEQFLDRDSNPVFQTEVRIEGFPAGTGTGYSKKESQQNAAQMAIKK 239


>gi|242021933|ref|XP_002431397.1| ribonuclease III, putative [Pediculus humanus corporis]
 gi|212516673|gb|EEB18659.1| ribonuclease III, putative [Pediculus humanus corporis]
          Length = 1410

 Score =  198 bits (505), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 63/230 (27%), Positives = 102/230 (44%), Gaps = 14/230 (6%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
              +  E+  G  F +  LL +A T  S   ++    S +RLEFLGD +L L+ S  L+ +
Sbjct: 1150 NLTKFEEATGIEFKHIRLLARAFTDRSVGYTNLTLGSNQRLEFLGDSVLQLIASEYLYKY 1209

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG LS+  +SLV+ +T S V  +L +  +                  +AD++E+ 
Sbjct: 1210 FPEHHEGHLSLLRSSLVNNKTQSVVCDDLGMTQYAVY----ANPKVELKVKDRADLLEAF 1265

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKF------GVTPE 174
            + ALY+D G+++   F D  +  R       +   D K++LQ+               P 
Sbjct: 1266 LGALYVDNGLDICRVFCDVCFFPRLQIFIMNQDWNDPKSKLQQCCLTLRTMDNVEPDIPI 1325

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            YKV    GP +   +TV V       A+    S + AE  AA + ++  G
Sbjct: 1326 YKVVECKGPTNTRVYTVAVYFRNKRLAKATGHSIQQAEMNAAQKAMEVSG 1375



 Score = 95.5 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 34/100 (34%), Positives = 53/100 (53%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
              ERLEFLGD ++  + S  LF+ F   +EG L+    +LV  +  S +A++L+L  F+ 
Sbjct: 1007 HNERLEFLGDAVVEFITSIHLFHIFRDLEEGGLATYRAALVQNQHLSVLAKKLNLDEFML 1066

Query: 99   VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138
             +          +    A+  E+L+ AL+LDGGIE A   
Sbjct: 1067 YAHGSDLCHDLELKHAMANCFEALMGALFLDGGIESADKV 1106


>gi|187735104|ref|YP_001877216.1| Ribonuclease III [Akkermansia muciniphila ATCC BAA-835]
 gi|187425156|gb|ACD04435.1| Ribonuclease III [Akkermansia muciniphila ATCC BAA-835]
          Length = 231

 Score =  198 bits (505), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 66/212 (31%), Positives = 93/212 (43%), Gaps = 6/212 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFN 61
           + ++ LE ++GY F N  LL +ALTH S       + +YERLEFLGD IL L ++  L++
Sbjct: 1   MNHTALEDKLGYRFNNPDLLVQALTHPSTDSKPETRRAYERLEFLGDAILQLAVTQYLYH 60

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           H   + EGEL+      VS     +    L L   I +     +       SI A+  ES
Sbjct: 61  HMPQSPEGELTQLRARTVSRANLGKYGFILGLDKHIALGKGEERAGGRGKNSIIANTFES 120

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTF 179
           +  A+ LD   E A     +   +    +    +  + K ELQ         TP Y+ T 
Sbjct: 121 VFGAMSLDSDYETAKAVALRVLHEALDSAASHPKEINPKGELQAILQDILPETPSYE-TE 179

Query: 180 RSGP-DHDPRFTVVVEISGLAPAQGMDCSKRA 210
             GP D + RF   V   G A   G   SKR 
Sbjct: 180 EKGPRDAENRFESRVFWHGHAIGAGSGASKRK 211


>gi|283782836|ref|YP_003373590.1| ribonuclease III [Gardnerella vaginalis 409-05]
 gi|283442034|gb|ADB14500.1| ribonuclease III [Gardnerella vaginalis 409-05]
          Length = 242

 Score =  198 bits (505), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 69/221 (31%), Positives = 101/221 (45%), Gaps = 11/221 (4%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDS 65
            L   +G   +   LL +ALTH S SH +    +YERLEFLGD +L L+ +  LF+    
Sbjct: 16  ELLNALGTTIS-PDLLVEALTHRSFSHEHPGTRNYERLEFLGDAVLELVSTETLFSAHPD 74

Query: 66  AKEGELSVRFNSLVSAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             EG+L+      VS    S VARE L + ++I +     +   +   SI  D+VE+LI 
Sbjct: 75  MTEGQLAKMRAKAVSEWALSAVAREKLHVGAYILLGRGEMEQGGNNKDSILCDIVEALIG 134

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A +++ GI+ A   V +       +  +     D KT L   AH      PEY++   SG
Sbjct: 135 ATFVEHGIDEARRVVHRLIDDTLAEVLTEGPALDWKTSLTVKAHDMGLEDPEYRM-AVSG 193

Query: 183 PDHDPRFTVVVEI----SGLAPAQGMDCSKRAAEQVAAAEV 219
           P++ P F     +           G   SKR A+  AA   
Sbjct: 194 PEYAPVFEARAVLAHKDGDEVLGVGSGSSKRKAQLAAAEIA 234


>gi|298253314|ref|ZP_06977106.1| dsRNA-specific ribonuclease [Gardnerella vaginalis 5-1]
 gi|297532709|gb|EFH71595.1| dsRNA-specific ribonuclease [Gardnerella vaginalis 5-1]
          Length = 276

 Score =  198 bits (504), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 69/221 (31%), Positives = 101/221 (45%), Gaps = 11/221 (4%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDS 65
            L   +G   +   LL +ALTH S SH +    +YERLEFLGD +L L+ +  LF+    
Sbjct: 50  ELLNALGTTIS-PDLLVEALTHRSFSHEHPGTRNYERLEFLGDAVLELVSTETLFSAHPD 108

Query: 66  AKEGELSVRFNSLVSAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             EG+L+      VS    S VARE L + ++I +     +   +   SI  D+VE+LI 
Sbjct: 109 MTEGQLAKMRAKAVSEWALSAVAREKLHVGAYILLGRGEMEQGGNNKDSILCDIVEALIG 168

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A +++ GI+ A   V +       +  +     D KT L   AH      PEY++   SG
Sbjct: 169 ATFVEHGIDEARRVVHRLIDDTLAEVLTEGPALDWKTSLTVKAHDMGLEDPEYRM-AVSG 227

Query: 183 PDHDPRFTVVVEI----SGLAPAQGMDCSKRAAEQVAAAEV 219
           P++ P F     +           G   SKR A+  AA   
Sbjct: 228 PEYAPVFEARAVLARKDGDEVLGVGSGSSKRKAQLAAAEIA 268


>gi|225351172|ref|ZP_03742195.1| hypothetical protein BIFPSEUDO_02762 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158628|gb|EEG71870.1| hypothetical protein BIFPSEUDO_02762 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 275

 Score =  198 bits (504), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 107/225 (47%), Gaps = 12/225 (5%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58
           M+A   + L + +G       LL +ALTH S SH     ++YERLEFLGD +L L+ +  
Sbjct: 16  MTA---NALLEALGTTLE-PDLLVEALTHRSFSHENPGAKNYERLEFLGDAVLELVSTET 71

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQAD 117
           L+       EG+L+      VS E+ S++ARE L+   +I +         +  +SI  D
Sbjct: 72  LYKAHPDMNEGQLAKMRAKAVSEESLSKIAREKLNAGPYILLGHGESDQGGADKSSILCD 131

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEY 175
           +VESLI A ++  GI+ A   V     +    + +     D KT L   AH      P Y
Sbjct: 132 IVESLIGATFIQHGIDEARRVVHHLVDETLAEVATEGPALDWKTSLTVKAHGMGFGEPRY 191

Query: 176 KVTFRSGPDHDPRFTVVVEIS--GLAPAQGMDCSKRAAEQVAAAE 218
           ++   SGP++   FT  V +       + G   SKR A+  AA E
Sbjct: 192 QM-SVSGPEYAQVFTANVMLGESDEIISTGTGTSKRKAQLAAAEE 235


>gi|298492780|ref|YP_003722957.1| ribonuclease III ['Nostoc azollae' 0708]
 gi|298234698|gb|ADI65834.1| ribonuclease III ['Nostoc azollae' 0708]
          Length = 227

 Score =  198 bits (504), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 55/198 (27%), Positives = 85/198 (42%), Gaps = 8/198 (4%)

Query: 16  AFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            F    LL +ALTH S  +      E  ERLEFLGD IL  +    L+  +    E EL+
Sbjct: 6   TFNREKLLCQALTHRSYVNENPGEGEHNERLEFLGDAILNFISGQYLYRRYPQKGEDELT 65

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
            R ++LV  +  ++ A E+ L   +R+     +D      ++ +   E++I A YLD   
Sbjct: 66  RRRSALVEEKQLAKFAIEVGLDFRMRLGKGAIRDGGFQNPNLLSSTFEAVIGAYYLDNNC 125

Query: 133 EV--AGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGV-TPEYKVTFRSGPDHDP 187
           EV    T ++  +      +   +   D+K   QEW   + G   P+Y      GP H P
Sbjct: 126 EVEPIRTIIEPLFDSVSEDIIEPRSNVDSKNRFQEWVQKEIGANPPKYVTEQIGGPSHAP 185

Query: 188 RFTVVVEISGLAPAQGMD 205
            F   V + G    +   
Sbjct: 186 EFIARVLVDGKEYGEAKG 203


>gi|297242888|ref|ZP_06926826.1| dsRNA-specific ribonuclease [Gardnerella vaginalis AMD]
 gi|296889099|gb|EFH27833.1| dsRNA-specific ribonuclease [Gardnerella vaginalis AMD]
          Length = 273

 Score =  197 bits (503), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 69/221 (31%), Positives = 101/221 (45%), Gaps = 11/221 (4%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDS 65
            L   +G   +   LL +ALTH S SH +    +YERLEFLGD +L L+ +  LF+    
Sbjct: 47  ELLNALGTTIS-PDLLVEALTHRSFSHEHPGTRNYERLEFLGDAVLELVSTETLFSAHPD 105

Query: 66  AKEGELSVRFNSLVSAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             EG+L+      VS    S VARE L + ++I +     +   +   SI  D+VE+LI 
Sbjct: 106 MTEGQLAKMRAKAVSEWALSAVAREKLHVGAYILLGRGEMEQGGNNKDSILCDIVEALIG 165

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A +++ GI+ A   V +       +  +     D KT L   AH      PEY++   SG
Sbjct: 166 ATFVEHGIDEARRVVHRLIDDTLAEVLTEGPALDWKTSLTVKAHDMGLEDPEYRM-AVSG 224

Query: 183 PDHDPRFTVVVEI----SGLAPAQGMDCSKRAAEQVAAAEV 219
           P++ P F     +           G   SKR A+  AA   
Sbjct: 225 PEYAPVFEARAVLAHKDGDEVLGVGSGSSKRKAQLAAAEIA 265


>gi|212716732|ref|ZP_03324860.1| hypothetical protein BIFCAT_01669 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660436|gb|EEB21011.1| hypothetical protein BIFCAT_01669 [Bifidobacterium catenulatum DSM
           16992]
          Length = 278

 Score =  197 bits (503), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 107/225 (47%), Gaps = 12/225 (5%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58
           M+A   + L + +G       LL +ALTH S SH     ++YERLEFLGD +L L+ +  
Sbjct: 16  MTA---NALLEALGTTLE-PDLLVEALTHRSFSHENPGAKNYERLEFLGDAVLELVSTET 71

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQAD 117
           L+       EG+L+      VS E+ S++ARE L+   +I +         +  +SI  D
Sbjct: 72  LYKAHPDMNEGQLAKMRAKAVSEESLSKIAREKLNAGPYILLGHGESDQGGADKSSILCD 131

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEY 175
           +VESLI A ++  GI+ A   V     +    + +     D KT L   AH      P Y
Sbjct: 132 IVESLIGATFIQHGIDEARRVVHHLVDETLAEVATEGPALDWKTSLTVKAHGMGFGEPRY 191

Query: 176 KVTFRSGPDHDPRFTVVVEIS--GLAPAQGMDCSKRAAEQVAAAE 218
           ++   SGP++   FT  V +       + G   SKR A+  AA E
Sbjct: 192 QM-SVSGPEYAQVFTANVMLGESDEIISTGTGTSKRKAQLAAAEE 235


>gi|40455575|gb|AAR85911.1| ribonuclease III-like protein [Rattus norvegicus]
          Length = 288

 Score =  197 bits (502), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 10/227 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 20  KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 79

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 80  FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 138

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175
           IAALY+D  +E   TF++  +  R  +    +   D K++LQ+         K    P Y
Sbjct: 139 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 198

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           K     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 199 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 245


>gi|29748104|gb|AAH50057.1| Rnasen protein [Mus musculus]
          Length = 705

 Score =  197 bits (502), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 111/227 (48%), Gaps = 10/227 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 437 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 496

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    E  L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 497 FPDHHERHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 555

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175
           IAALY+D  +E   TF++  +  R  +    +   D K++LQ+         K    P Y
Sbjct: 556 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 615

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           K     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 616 KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 662



 Score = 95.9 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 54/107 (50%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
              ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 294 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 353

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
             +        S +    A+  E+LI A+YL+G +E A     +   
Sbjct: 354 LYAHGPDLCSESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 400


>gi|256379958|ref|YP_003103618.1| ribonuclease III [Actinosynnema mirum DSM 43827]
 gi|255924261|gb|ACU39772.1| ribonuclease III [Actinosynnema mirum DSM 43827]
          Length = 267

 Score =  197 bits (502), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 62/212 (29%), Positives = 95/212 (44%), Gaps = 9/212 (4%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLF 60
           ++  + L + +G    +  LL  ALTH S ++        ERLEFLGD +LGL+++  L+
Sbjct: 10  SVDRTPLLEALGV-PLDAELLTLALTHRSYAYENGGLPPNERLEFLGDAVLGLVVTDHLY 68

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVAR---ELDLASFIRVSSDLRKDVCSFMTSIQAD 117
                  EG+L+    S+V+    + VAR      L   + +             SI AD
Sbjct: 69  RAHPDRPEGQLAKLRASVVNMHALAGVARGLGADGLGGHLLLGRGEELTGGRDKASILAD 128

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEY 175
            +E++I A+YL  GI+ A   V   +     ++       D KT LQE   +     PEY
Sbjct: 129 GLEAVIGAVYLQFGIDTARQLVHHLFDPLLAEAPLRGAGLDWKTSLQELTASSGLGVPEY 188

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           +V  + GPDH   FT  V + G     G   +
Sbjct: 189 RVDDQ-GPDHRKEFTATVYVGGKPHGSGDGRT 219


>gi|257055001|ref|YP_003132833.1| RNAse III [Saccharomonospora viridis DSM 43017]
 gi|256584873|gb|ACU96006.1| RNAse III [Saccharomonospora viridis DSM 43017]
          Length = 250

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 64/208 (30%), Positives = 103/208 (49%), Gaps = 9/208 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
           ++L + +G    +  LL  ALTH S ++        ERLEFLGD +LGL+++  L+    
Sbjct: 14  TSLLEALGVEI-DSELLTLALTHRSYAYENGGLPPNERLEFLGDAVLGLVVTDHLYRQHP 72

Query: 65  SAKEGELSVRFNSLVSAETCSQVARE---LDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
              EG+L+    S+V+    + VAR      L + + +             SI AD +E+
Sbjct: 73  DLPEGQLAKLRASVVNMHALAGVARSLGEGGLGAHLLLGKGEELTGGRDKASILADGLEA 132

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTF 179
           +I A+YL+ GIE A + V + + +   ++ +     D KT LQE   +     PEYKV  
Sbjct: 133 VIGAVYLEHGIETARSLVHRLFGRLLAEAPRRGAGLDWKTSLQELTASAGLGVPEYKVVD 192

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            +GPDH   F+ VV ++G    +G   +
Sbjct: 193 -TGPDHRKEFSAVVLVNGRDLGRGDGTT 219


>gi|209525933|ref|ZP_03274467.1| Ribonuclease III [Arthrospira maxima CS-328]
 gi|209493610|gb|EDZ93931.1| Ribonuclease III [Arthrospira maxima CS-328]
          Length = 395

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 66/213 (30%), Positives = 101/213 (47%), Gaps = 21/213 (9%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60
             S L K+I   F N  LL  ALTHSS  + + +      E LEFLGD +L  +    L+
Sbjct: 165 ELSKLLKKI--PFQNVDLLNHALTHSSYLYEHPKEVKRDNELLEFLGDSVLNFISGEYLY 222

Query: 61  NHFDS-AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           N + S   EG+L+   ++LV  +  ++ A +L L  +IR+         +   S+ ++  
Sbjct: 223 NKYKSVRNEGDLTKLRSALVENKQLAKFAEKLALQQYIRLGKG-----AALNPSLLSNTF 277

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALK--------SGKFRRDAKTELQEWAHAKFGV 171
           E++I A +LD G++    F+   +     +        SGK   D+K  LQEW     G 
Sbjct: 278 EAMIGAYFLDSGMKKVQEFLQPLFDSVIAEITSLSQGNSGKVAADSKNRLQEWVQKNIGP 337

Query: 172 -TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203
            TPEY+     G DH  +FTV V + G    +G
Sbjct: 338 ITPEYETIKEEGADHKKQFTVQVMVQGKVYGEG 370


>gi|224536731|ref|ZP_03677270.1| hypothetical protein BACCELL_01607 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521647|gb|EEF90752.1| hypothetical protein BACCELL_01607 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 296

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 63/229 (27%), Positives = 115/229 (50%), Gaps = 13/229 (5%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIST 57
               Y    K +G+   N  L ++AL H S S   ++    + ERLEFLGD IL  ++  
Sbjct: 16  DKESYFCFYKILGFYPRNIQLYQQALLHKSTSIRSEKGRPLNNERLEFLGDAILDAIVGD 75

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
           +++ HF+  +EG L+   + +V  ET +++A E+ L   ++ S+       S  + +  +
Sbjct: 76  IVYKHFEGRREGFLTNTRSKIVQRETLNKLAVEIGLDKLVKYST----RSSSHNSYMYGN 131

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPE 174
             E+ I A+YLD G E    F+++   +  +   K  R   + K++L EW+  K  V   
Sbjct: 132 AFEAFIGAIYLDQGYERCKRFMEEKIFKNYIDLDKMSRKEVNFKSKLIEWSQ-KSKVEVS 190

Query: 175 YKVTFRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +++  +    D++P F   + I G++  +G   SK+ ++Q AA   LK+
Sbjct: 191 FELIEQFLDEDYNPMFHTEIRIEGISAGKGTGYSKKESQQNAAQAALKK 239


>gi|298387131|ref|ZP_06996685.1| ribonuclease 3 [Bacteroides sp. 1_1_14]
 gi|298260281|gb|EFI03151.1| ribonuclease 3 [Bacteroides sp. 1_1_14]
          Length = 324

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 64/228 (28%), Positives = 111/228 (48%), Gaps = 15/228 (6%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59
             Y    + +G+   N  + E+AL H S S   ++    + ERLEFLGD IL  ++  ++
Sbjct: 31  ESYLCFYRILGFYPHNIQIYEQALLHKSSSVRSEKGRPLNNERLEFLGDAILDAIVGDIV 90

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  F+  +EG L+   + +V  ET +++A E+ L   I+ S+       S  + +  +  
Sbjct: 91  YKRFEGKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAF 146

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYK 176
           E+ I A+YLD G E    F+++    R +   K  R   + K++L EW+     +   ++
Sbjct: 147 EAFIGAIYLDQGYERCKQFMEQRIINRYIDLDKISRKEVNFKSKLIEWSQKN-KMEVSFE 205

Query: 177 VTFRSGPDHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +  +   DHD  P F   V I GL    G   SK+ ++Q AA   +K+
Sbjct: 206 LIEQF-LDHDSNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 252


>gi|29348766|ref|NP_812269.1| ribonuclease III [Bacteroides thetaiotaomicron VPI-5482]
 gi|253568891|ref|ZP_04846301.1| ribonuclease III [Bacteroides sp. 1_1_6]
 gi|29340672|gb|AAO78463.1| ribonuclease III [Bacteroides thetaiotaomicron VPI-5482]
 gi|251840910|gb|EES68991.1| ribonuclease III [Bacteroides sp. 1_1_6]
          Length = 324

 Score =  196 bits (499), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 111/228 (48%), Gaps = 15/228 (6%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59
             Y    + +G+   N  + E+AL H S +   ++    + ERLEFLGD IL  ++  ++
Sbjct: 31  ESYLCFYRILGFYPHNIQIYEQALLHKSSAVRSEKGRPLNNERLEFLGDAILDAIVGDIV 90

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  F+  +EG L+   + +V  ET +++A E+ L   I+ S+       S  + +  +  
Sbjct: 91  YKRFEGKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAF 146

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYK 176
           E+ I A+YLD G E    F+++    R +   K  R   + K++L EW+     +   ++
Sbjct: 147 EAFIGAIYLDQGYERCKQFMEQRIINRYIDLDKISRKEVNFKSKLIEWSQKN-KMEVSFE 205

Query: 177 VTFRSGPDHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +  +   DHD  P F   V I GL    G   SK+ ++Q AA   +K+
Sbjct: 206 LIEQF-LDHDSNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 252


>gi|212695676|ref|ZP_03303804.1| hypothetical protein ANHYDRO_00193 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677349|gb|EEB36956.1| hypothetical protein ANHYDRO_00193 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 228

 Score =  196 bits (499), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 60/198 (30%), Positives = 103/198 (52%), Gaps = 7/198 (3%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           IGY+F N++L++ ALTHSS  +  ++    S ERLEFLGD IL L++S  L+ +  S  E
Sbjct: 18  IGYSFKNKNLIDVALTHSSYINESKDKNRSSNERLEFLGDSILDLVVSEELYKNHKSYPE 77

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+L+   + +V   + S+ + + +L+S++               S++AD  E+  AA+YL
Sbjct: 78  GKLTKIRSRIVCTSSFSKASEKFNLSSYLLFGKGEISHNGREKKSVKADTFEAFCAAIYL 137

Query: 129 DGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           D G      F+ + +    +  L++     D KT+LQE+ +       +YK+    GP+H
Sbjct: 138 DAGYVFLKNFLMENYYQTVKELLENDLLFIDYKTKLQEYFNKTNRTILKYKLAKEEGPEH 197

Query: 186 DPRFTVVVEISGLAPAQG 203
           +  F + V       + G
Sbjct: 198 NKTFYMDVYAKNKKLSTG 215


>gi|306823678|ref|ZP_07457053.1| ribonuclease III [Bifidobacterium dentium ATCC 27679]
 gi|309802879|ref|ZP_07696980.1| ribonuclease III [Bifidobacterium dentium JCVIHMP022]
 gi|304553385|gb|EFM41297.1| ribonuclease III [Bifidobacterium dentium ATCC 27679]
 gi|308220346|gb|EFO76657.1| ribonuclease III [Bifidobacterium dentium JCVIHMP022]
          Length = 294

 Score =  196 bits (499), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 70/207 (33%), Positives = 101/207 (48%), Gaps = 9/207 (4%)

Query: 20  RSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
             LL +ALTH S SH +   ++YERLEFLGD +L L+ +  L+       EG+L+     
Sbjct: 81  PELLVEALTHRSFSHEHPGAKNYERLEFLGDAVLELVSTETLYAAHPDMTEGQLAKMRAK 140

Query: 78  LVSAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
            VS E+ S +ARE L +  +I + +   +   +  +SI  D+VESLI A ++  GI+ A 
Sbjct: 141 AVSEESLSHIAREKLHVGPYILLGNGEAEQHGAEKSSILCDIVESLIGATFIQHGIDEAR 200

Query: 137 TFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
             V          + +     D KT L   AH      P Y++   SGP++   FT    
Sbjct: 201 KVVHHLVDDTLAEVATEGPALDWKTSLTVKAHDMGLGEPYYRM-SVSGPEYAQVFTAKAM 259

Query: 195 ISG--LAPAQGMDCSKRAAEQVAAAEV 219
           + G       G   SKR A Q+AAAE 
Sbjct: 260 LEGSDEVIGIGKGSSKRKA-QLAAAEA 285


>gi|294791394|ref|ZP_06756551.1| ribonuclease III [Scardovia inopinata F0304]
 gi|294457865|gb|EFG26219.1| ribonuclease III [Scardovia inopinata F0304]
          Length = 271

 Score =  196 bits (499), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 65/209 (31%), Positives = 108/209 (51%), Gaps = 6/209 (2%)

Query: 20  RSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
             L  +ALTH S ++ +    +YERLEFLGD +L L+I+  L+ +  +  EG++S   + 
Sbjct: 36  PDLFVEALTHRSFTNEHPLAHNYERLEFLGDAVLELVITETLYKNHPTYSEGQMSRIRSK 95

Query: 78  LVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           +VS E+ S++AR +L ++ FI +    ++D  ++  SI  DVVESLI A++++ GI+ A 
Sbjct: 96  VVSEESLSEIARDKLKISQFILLGIGEQRDKGAYKPSILCDVVESLIGAVFIEQGIDKAR 155

Query: 137 TFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
             +            +     D KT +   AH        Y++   SGP++   FT  + 
Sbjct: 156 QVIHHLLDDNLAFYTTEGPALDWKTAIVIKAHKMNLGEVSYRM-EMSGPENHLEFTAYLL 214

Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           I+    A G   SKR A+  AA +   + 
Sbjct: 215 INDQDVAWGRGSSKRKAQLDAAQKAWHQL 243


>gi|213389868|gb|ACJ45995.1| putative ribonuclease III [Palm lethal yellowing phytoplasma]
          Length = 207

 Score =  196 bits (499), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 60/209 (28%), Positives = 91/209 (43%), Gaps = 7/209 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLF 60
           +    L +R+     N SL   ALTHSS ++         ERLEFLGD ++  L++  L+
Sbjct: 1   MPLQKLFQRLKIEPKNISLYINALTHSSYANESPFQNNDNERLEFLGDAVINFLMANYLY 60

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
              +   EG ++ +    V  ++    A E+DL  +I +    +K       SI AD  E
Sbjct: 61  RK-NKYDEGSMTKKRAQAVCIDSLLIYANEIDLKEYILLGKGEQKRYI-HNYSIIADAFE 118

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +L  A+YLD G E               K  K   D KT+LQE   A+   T  YK+   
Sbjct: 119 ALFGAIYLDLGYEQVKKTFYYVVLPCLNKIIKII-DYKTQLQEIVQAE-KQTIHYKIIEE 176

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           +G  H+  F   V ++      G   +K+
Sbjct: 177 TGLAHEKEFIAEVYLNNKLLGSGTGKTKK 205


>gi|312375831|gb|EFR23111.1| hypothetical protein AND_13526 [Anopheles darlingi]
          Length = 1254

 Score =  196 bits (499), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 102/227 (44%), Gaps = 14/227 (6%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
             +  E  IG  F++  LL +A T  S   ++    S +RLEFLGD +L L+ S  L+ HF
Sbjct: 778  LTRFEDSIGVKFSHIRLLARAFTDRSMGFTNLTLGSNQRLEFLGDTVLQLICSEYLYRHF 837

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
                EG LS+  +SLV+  T + V  +L +  +   S+          T  +AD++E+ +
Sbjct: 838  PEHHEGHLSLLRSSLVNNRTQAVVCDDLGMTQYAVYSNP----KAELKTKDRADLLEAFL 893

Query: 124  AALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKF------GVTPEY 175
             ALY+D G+     F       R       +   D K++LQ+               P Y
Sbjct: 894  GALYVDKGLVYCEKFCQVCLFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPLY 953

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            KV   +GP +   ++V V   G   A     S + AE  AA + L++
Sbjct: 954  KVIECTGPTNTRVYSVAVYFRGKRLACANGHSIQQAEMNAARQALEK 1000



 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 51/212 (24%), Positives = 76/212 (35%), Gaps = 57/212 (26%)

Query: 9   LEKRIGYAFANRSLLEKALTHSS------------------------------------- 31
           LEK I Y F NR  L+ ALTH S                                     
Sbjct: 548 LEKHIDYRFTNRYTLQLALTHPSYKENFGTNPDHARNSLTNCGIRQPEYGDRKIHYMNTR 607

Query: 32  -------------ISHSYQES-----YERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
                            ++        ERLEFLGD ++  + S  LF+ F   +EG L+ 
Sbjct: 608 KRGINTLISIMSRFGKEHETDSNITHNERLEFLGDAVVEFITSIHLFHMFPDLEEGGLAT 667

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
              ++V  +  + +A++L L  F+  +          +    A+  E+L+ AL LDGGI 
Sbjct: 668 YRAAIVQNQHLAVLAKKLHLEEFMLYAHGSDLCHELELRHALANCFEALMGALLLDGGIA 727

Query: 134 VA-GTFVDKYWKQRALKSGKFRRDAKT-ELQE 163
           VA   F    +     K  +   +     LQE
Sbjct: 728 VADRVFAYALFGPDEPKLHEIWTNYPRHPLQE 759


>gi|90101612|sp|Q8A2E8|RNC_BACTN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
          Length = 311

 Score =  196 bits (499), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 111/228 (48%), Gaps = 15/228 (6%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59
             Y    + +G+   N  + E+AL H S +   ++    + ERLEFLGD IL  ++  ++
Sbjct: 18  ESYLCFYRILGFYPHNIQIYEQALLHKSSAVRSEKGRPLNNERLEFLGDAILDAIVGDIV 77

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  F+  +EG L+   + +V  ET +++A E+ L   I+ S+       S  + +  +  
Sbjct: 78  YKRFEGKREGFLTNTRSKIVQRETLNKLAVEIGLDKLIKYST----RSSSHNSYMYGNAF 133

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYK 176
           E+ I A+YLD G E    F+++    R +   K  R   + K++L EW+     +   ++
Sbjct: 134 EAFIGAIYLDQGYERCKQFMEQRIINRYIDLDKISRKEVNFKSKLIEWSQKN-KMEVSFE 192

Query: 177 VTFRSGPDHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +  +   DHD  P F   V I GL    G   SK+ ++Q AA   +K+
Sbjct: 193 LIEQF-LDHDSNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 239


>gi|283455260|ref|YP_003359824.1| ribonuclease III [Bifidobacterium dentium Bd1]
 gi|283101894|gb|ADB09000.1| rncS Ribonuclease III [Bifidobacterium dentium Bd1]
          Length = 294

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 70/207 (33%), Positives = 101/207 (48%), Gaps = 9/207 (4%)

Query: 20  RSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
             LL +ALTH S SH +   ++YERLEFLGD +L L+ +  L+       EG+L+     
Sbjct: 81  PELLVEALTHRSFSHEHPGAKNYERLEFLGDAVLELVSTETLYAAHPDMTEGQLAKMRAK 140

Query: 78  LVSAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
            VS E+ S +ARE L +  +I + +   +   +  +SI  D+VESLI A ++  GI+ A 
Sbjct: 141 AVSEESLSHIAREKLHVGPYILLGNGEAEQHGAEKSSILCDIVESLIGATFIQHGIDEAR 200

Query: 137 TFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
             V          + +     D KT L   AH      P Y++   SGP++   FT    
Sbjct: 201 KVVHHLVDDTLAEVATEGPALDWKTSLTVKAHDMGLGEPYYRM-SVSGPEYAQVFTAKAM 259

Query: 195 ISG--LAPAQGMDCSKRAAEQVAAAEV 219
           + G       G   SKR A Q+AAAE 
Sbjct: 260 LEGSDEVIGIGKGSSKRKA-QLAAAEA 285


>gi|186681790|ref|YP_001864986.1| ribonuclease III [Nostoc punctiforme PCC 73102]
 gi|186464242|gb|ACC80043.1| ribonuclease III [Nostoc punctiforme PCC 73102]
          Length = 228

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 54/200 (27%), Positives = 82/200 (41%), Gaps = 9/200 (4%)

Query: 17  FANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           F N  LL  ALTH S  H      E  ERLEFLGD +L  L    L+       E EL+ 
Sbjct: 7   FHNEKLLRHALTHRSYVHENPGEGEHNERLEFLGDALLNFLSGEYLYKCHPEMGEDELTR 66

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL--DGG 131
           R ++LV  +  ++ A E+ L   +R+      D      ++ +   E+++ A YL  D  
Sbjct: 67  RRSALVDEKQLAKFAEEVGLDFRMRLGKGAILDGGYQNPNLLSSTFEAVLGAYYLDNDSN 126

Query: 132 IEVAGTFVDKYW---KQRALKSGKFRRDAKTELQEWAHAKFGV-TPEYKVTFRSGPDHDP 187
           IE     ++  +     + +   +   D+K   QEW         P+Y      GP H P
Sbjct: 127 IEAVRAIIEPLFDSVDPKHIVVSRSNVDSKNRFQEWVQRNVTPNPPKYFTEQIGGPSHAP 186

Query: 188 RFTVVVEISGLAPAQGMDCS 207
            F   V +      +G   +
Sbjct: 187 EFIAKVLVDEKIYGEGKGRN 206


>gi|167645701|ref|YP_001683364.1| ribonuclease III [Caulobacter sp. K31]
 gi|189043302|sp|B0T3I0|RNC_CAUSK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|167348131|gb|ABZ70866.1| Ribonuclease III [Caulobacter sp. K31]
          Length = 232

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 91/207 (43%), Positives = 122/207 (58%), Gaps = 3/207 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHF 63
            + LE+RIG+ FA+R LLE ALTH+S+    ++    E LEF+GDR+LGLL +  L   F
Sbjct: 8   VADLERRIGHTFADRKLLELALTHASVGDGAKKAGDNEVLEFIGDRVLGLLAAEALAERF 67

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
             AKEGEL+ R N+LVS ETC++VAR  ++   +R+S+   K       SI A   E+L+
Sbjct: 68  PKAKEGELAPRLNALVSRETCARVARGAEMGPALRLSASSSKIGGRETDSILAGAAEALM 127

Query: 124 AALYLDGGIEVAGTFVDKYWK-QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           AALY DGG+E+A       W  +  L +    RD KT LQEWA ++    P Y V  R G
Sbjct: 128 AALYRDGGLELARRVFLDLWAGEFDLANQGKPRDPKTALQEWAQSQGKPLPTYAVKDRKG 187

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209
           PDH P FTV V + GL P      S++
Sbjct: 188 PDHAPMFTVQVTVVGLDPVFAEGRSRQ 214


>gi|24637290|gb|AAN63637.1|AF440766_1 ribonuclease III [Mus musculus]
          Length = 541

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 110/227 (48%), Gaps = 10/227 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 273 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 332

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD+ ES 
Sbjct: 333 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLWESF 391

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175
           IAALY+D  +E   TF++  +  R  +    +   D K++LQ+         K    P Y
Sbjct: 392 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 451

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           K     GP H   + V V   G     G   S + AE  AA + L++
Sbjct: 452 KTLQTVGPSHARTYPVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 498



 Score = 95.9 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 54/107 (50%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
              ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 130 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAMVQNQHLAMLAKKLELDRFM 189

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
             +        S +    A+  E+LI A+YL+G +E A     +   
Sbjct: 190 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 236


>gi|218131792|ref|ZP_03460596.1| hypothetical protein BACEGG_03413 [Bacteroides eggerthii DSM 20697]
 gi|217986095|gb|EEC52434.1| hypothetical protein BACEGG_03413 [Bacteroides eggerthii DSM 20697]
          Length = 301

 Score =  195 bits (497), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 112/227 (49%), Gaps = 13/227 (5%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59
             Y    K +G+   N    ++AL H S S   ++    + ERLEFLGD IL  ++  ++
Sbjct: 30  ESYFCFYKILGFFPRNIRFYQQALLHKSTSVRSEKGRPLNNERLEFLGDAILDAIVGDIV 89

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           + HF+  +EG L+   + +V  ET +++A E+ L   ++ S+       S  + +  +  
Sbjct: 90  YKHFEGRREGFLTNTRSKIVQRETLNKLAVEIGLDKLVKYST----RSSSHNSYMYGNAF 145

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYK 176
           E+LI A+YLD G E    F+++   +  +   K  R   + K++L EW+     +   ++
Sbjct: 146 EALIGAIYLDQGYERCKQFMEEKILKNYIDLDKMSRKEVNFKSKLIEWSQKN-KMEVSFE 204

Query: 177 VTFRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +  +S   D++P F   V I  L    G   SK+ ++Q AA   LK+
Sbjct: 205 LIEQSLDRDYNPMFHTEVLIENLPAGTGTGYSKKESQQNAAQMALKK 251


>gi|297571639|ref|YP_003697413.1| ribonuclease III [Arcanobacterium haemolyticum DSM 20595]
 gi|296931986|gb|ADH92794.1| ribonuclease III [Arcanobacterium haemolyticum DSM 20595]
          Length = 235

 Score =  195 bits (496), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 67/227 (29%), Positives = 108/227 (47%), Gaps = 6/227 (2%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLL 59
           M     S L    G    +  LL  ALTH S +  ++  + ERLEF+GD ILG +++  +
Sbjct: 1   MHEQDRSPLLDAWGVEIPD-ELLTLALTHRSWAFEHECGNNERLEFMGDSILGAVVAEQI 59

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F+ +    EGELS   ++ VS    + +AR L+L ++IR+     +       SI AD V
Sbjct: 60  FHDYPEKSEGELSKIKSAAVSERALAGIARGLNLGAYIRLGKGEERTGGRDKDSILADTV 119

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKF-GVTPEYK 176
           E+LIAA Y  GG+ V  + V  +   + +++ +     D +T ++E A          Y 
Sbjct: 120 EALIAATYEAGGLRVVISTVRHHLHAKIIEATQMGPALDWRTGMEEKARELGIAGELSYT 179

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +    GPDH   +T  V I      +G   S++A++  A  +   R 
Sbjct: 180 IVGE-GPDHAKVYTARVFIGETEWGRGDATSRKASKLAACKDAYYRL 225


>gi|154486628|ref|ZP_02028035.1| hypothetical protein BIFADO_00445 [Bifidobacterium adolescentis
           L2-32]
 gi|154084491|gb|EDN83536.1| hypothetical protein BIFADO_00445 [Bifidobacterium adolescentis
           L2-32]
          Length = 298

 Score =  195 bits (496), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 111/226 (49%), Gaps = 13/226 (5%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58
           M+A   + L + +G       LL +ALTH S SH ++  ++YERLEFLGD +L L+ +  
Sbjct: 37  MTA---NVLLEALGTTIE-PDLLVEALTHRSFSHEHEGAKNYERLEFLGDAVLELVSTET 92

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQAD 117
           L+       EG+L+      VS E+ S++ARE L +  +I +     +   +  +SI  D
Sbjct: 93  LYKVHPDMNEGQLAKMRAKAVSEESLSKIAREKLHVGPYILLGHGEAEQGGADKSSILCD 152

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEY 175
           +VESLI A ++  GI+ A   V          + +     D KT L   AH      P Y
Sbjct: 153 IVESLIGATFIQHGIDEARRVVHHLVDDTLAEVATEGPALDWKTSLTVKAHEMGLPDPHY 212

Query: 176 KVTFRSGPDHDPRFTVVVEI--SGLAPAQGMDCSKRAAEQVAAAEV 219
           + T  +GP++   FT    +   G     G   SKR A Q+AAAE+
Sbjct: 213 Q-TSVAGPEYALEFTARAILGDGGEVIGVGTGSSKRKA-QLAAAEM 256


>gi|167752469|ref|ZP_02424596.1| hypothetical protein ALIPUT_00720 [Alistipes putredinis DSM 17216]
 gi|167659538|gb|EDS03668.1| hypothetical protein ALIPUT_00720 [Alistipes putredinis DSM 17216]
          Length = 264

 Score =  195 bits (496), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 61/218 (27%), Positives = 94/218 (43%), Gaps = 11/218 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61
           Y  +++  G+   N  L + AL H S     +   Q + ERLEFLGD ++  + S  L+ 
Sbjct: 20  YRIIDELFGFVPHNIELYKLALIHKSASLVLADGRQINNERLEFLGDAVIEAVTSDYLYI 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F   +EG L+   + +VS ++ + +AR + L  ++  +        +    I  D  E+
Sbjct: 80  EFPDRQEGFLTQLRSKIVSRQSLNTIARTIGLDRYVIANP----TGSTNQKHIYGDAFEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178
           +I A+YLD G E A   +      R L          D K+ L EW            V 
Sbjct: 136 MIGAIYLDQGYEFANRLLINNIYYRYLNLDNLTDEETDFKSRLIEWCQKTHHTIAFETVH 195

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            R+   + P F   V I G+    G   SK+ AEQ AA
Sbjct: 196 GRNYSSNHPIFDATVVIDGIRVGHGQGESKKEAEQCAA 233


>gi|270294929|ref|ZP_06201130.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317477924|ref|ZP_07937108.1| ribonuclease III [Bacteroides sp. 4_1_36]
 gi|270274176|gb|EFA20037.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316905940|gb|EFV27710.1| ribonuclease III [Bacteroides sp. 4_1_36]
          Length = 309

 Score =  195 bits (496), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 58/227 (25%), Positives = 114/227 (50%), Gaps = 13/227 (5%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59
             Y    + +G+   +  + ++AL H SIS   ++    + ERLEFLGD IL  ++  ++
Sbjct: 35  ESYFCFYRILGFFPRDIKVYQQALLHKSISMRSEKGRPINNERLEFLGDAILDAIVGDIV 94

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           + HF+  +EG L+   + +V  ET +++A E+ L   ++ S+       S  + +  +  
Sbjct: 95  YRHFEGRREGFLTNTRSKIVQRETLNKLAVEIGLDKLVKYST----RSSSHNSYMYGNAF 150

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYK 176
           E+ I A+YLD G +    F+++   +  +   K  R   + K++L EW+     +   ++
Sbjct: 151 EAFIGAIYLDQGYDRCKQFMEEKIFKNYIDLDKMSRKEVNFKSKLIEWSQKN-KMEVSFE 209

Query: 177 VTFRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +  +    +++P F   V I G++   G   SK+ ++Q AA   LK+
Sbjct: 210 LIEQFLDEEYNPMFHTEVRIEGISAGTGTGYSKKESQQNAAQMALKK 256


>gi|195402669|ref|XP_002059927.1| GJ15113 [Drosophila virilis]
 gi|194140793|gb|EDW57264.1| GJ15113 [Drosophila virilis]
          Length = 1306

 Score =  195 bits (496), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 96/228 (42%), Gaps = 14/228 (6%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
              +  E  IG  F +  LL +A T  S   +H    S +RLEFLGD +L L+ S  L+ H
Sbjct: 955  DLTKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRH 1014

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG LS+  +SLV+  T + V  +L +  +               T  +AD++E+ 
Sbjct: 1015 FPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYAVY----ANPKADLKTKDRADLLEAF 1070

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKF------GVTPE 174
            + ALY+D G+     F       R       +   D K++LQ+               P 
Sbjct: 1071 LGALYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPY 1130

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YKV   SGP +   + V V       A     S + AE  AA + L+ 
Sbjct: 1131 YKVVEASGPTNTRVYKVAVYFRSKRLATASGSSIQQAEMNAAKQALEN 1178



 Score = 78.6 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 3/136 (2%)

Query: 29  HSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVA 88
           H ++S+      ERLEFLGD ++  L S  LF  F   +EG L+    ++V  +  + +A
Sbjct: 804 HETVSNIT--HNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLA 861

Query: 89  RELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL 148
           ++L L  F+  +          +    A+  E+L+ AL LDGGI+VA         ++  
Sbjct: 862 KKLQLEEFMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIKVADEVFTDALFRQDE 921

Query: 149 KSGKFRRD-AKTELQE 163
           K  K  ++  +  LQE
Sbjct: 922 KLLKIWKNLPEHPLQE 937


>gi|294054381|ref|YP_003548039.1| ribonuclease III [Coraliomargarita akajimensis DSM 45221]
 gi|293613714|gb|ADE53869.1| ribonuclease III [Coraliomargarita akajimensis DSM 45221]
          Length = 228

 Score =  195 bits (496), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 69/205 (33%), Positives = 99/205 (48%), Gaps = 5/205 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             +TL  +I ++F + SLLE AL H S+     E  +RLEFLGD +L L+I+  L+ HF 
Sbjct: 4   NLTTLADKIDHSFTDHSLLEMALKHPSL-DIGVEDNQRLEFLGDAVLDLVIAEYLYQHFP 62

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           S +EG L  R  SLVS +  +  A EL L + + VS   R         +  D +E+LI 
Sbjct: 63  SEEEGRLDRRRASLVSGKALAPKALELGLNTVLVVSEAQRTHHPEPSKGMLEDALEALIG 122

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGK-FRRD--AKTELQEWAHA-KFGVTPEYKVTFR 180
           A+YLD G++ A   +   +        +    D  AK  LQEW    + G  P+Y +   
Sbjct: 123 AIYLDAGLDAARRSIRHIFAPELAAMAEGSPHDSRAKNRLQEWTQKHRQGAQPKYALIGS 182

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMD 205
            GPDH   + V V +       G  
Sbjct: 183 EGPDHARVYHVSVSLDDEELGTGSG 207


>gi|329964465|ref|ZP_08301519.1| ribonuclease III [Bacteroides fluxus YIT 12057]
 gi|328524865|gb|EGF51917.1| ribonuclease III [Bacteroides fluxus YIT 12057]
          Length = 294

 Score =  194 bits (495), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 61/226 (26%), Positives = 113/226 (50%), Gaps = 13/226 (5%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60
            Y    K +G+   N  + ++AL H S S   ++    + ERLEFLGD IL  ++  +++
Sbjct: 19  SYLCFYKILGFFPHNIQIYQQALLHKSTSIRSEKGRPLNNERLEFLGDAILDAIVGDIVY 78

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            HFD  +EG L+   + +V  ET +++A E+ L   ++ S+       S  + +  +  E
Sbjct: 79  KHFDGRREGFLTNTRSKIVQRETLNKLAVEIGLDKLVKYST----RSSSHNSYMYGNAFE 134

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKV 177
           + I A+YLD G +    F+++   +  +   K  R   + K++L EW+     +   +++
Sbjct: 135 AFIGAIYLDQGYDRCKQFMEEKIFKNYIDLDKMSRKEVNFKSKLIEWSQKN-KMEVSFEL 193

Query: 178 TFR-SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             +    D++P F   V I G++   G   SK+ ++Q AA   LK+
Sbjct: 194 IEQLLDEDYNPMFHTEVRIEGISAGTGTGYSKKESQQNAARMTLKK 239


>gi|157119283|ref|XP_001653338.1| ribonuclease iii [Aedes aegypti]
 gi|108875392|gb|EAT39617.1| ribonuclease iii [Aedes aegypti]
          Length = 1374

 Score =  194 bits (495), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 103/227 (45%), Gaps = 14/227 (6%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
             +  E  IG  F +  LL +A T  S   ++    S +RLEFLGD +L L+ S  L+ HF
Sbjct: 945  LTKFEDAIGVNFNHIRLLARAFTDRSIGFTNLTLGSNQRLEFLGDTVLQLICSEYLYRHF 1004

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
                EG LS+  +SLV+  T + V  +L + ++   S+          T  +AD++E+ +
Sbjct: 1005 PEHHEGHLSLLRSSLVNNRTQAVVCDDLGMTTYAVYSNP----KADLKTKDRADLLEAFL 1060

Query: 124  AALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKF------GVTPEY 175
             ALY+D G+E   TF       R       +   D K++LQ+               P Y
Sbjct: 1061 GALYVDKGLEHCETFCHVCLFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPIY 1120

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            KV   +GP +   +TV V   G   A     S + AE  AA + L+ 
Sbjct: 1121 KVIECNGPTNTRVYTVAVYFRGKRLACSNGHSIQQAEMNAAKKALEN 1167



 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 47/207 (22%), Positives = 71/207 (34%), Gaps = 55/207 (26%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES-------------------------- 39
              LE+ I Y F NR  L+ ALTH S   ++  +                          
Sbjct: 713 LDVLEEHIDYKFINRYTLQLALTHPSYKENFGTNPDHARNSLTNCGIRQPEYGDRKIHFM 772

Query: 40  --------------------YE---------RLEFLGDRILGLLISTLLFNHFDSAKEGE 70
                               YE         RLEFLGD ++  + S  LF+ F   +EG 
Sbjct: 773 NTRKRGINTLISIMSRFGKEYETDSNITHNERLEFLGDAVVEFITSIHLFHMFPDLEEGG 832

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           L+    ++V  +  + +A+ L L  F+  +          +    A+  E+L+ AL LDG
Sbjct: 833 LATYRAAIVQNQHLAVLAKTLHLEEFMLYAHGSDLCHELELRHALANCFEALMGALLLDG 892

Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDA 157
           GIE A         Q          + 
Sbjct: 893 GIETADRVFAYALFQEDTNLRNIWVNY 919


>gi|160888577|ref|ZP_02069580.1| hypothetical protein BACUNI_00994 [Bacteroides uniformis ATCC 8492]
 gi|156861891|gb|EDO55322.1| hypothetical protein BACUNI_00994 [Bacteroides uniformis ATCC 8492]
          Length = 306

 Score =  194 bits (494), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 58/227 (25%), Positives = 114/227 (50%), Gaps = 13/227 (5%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59
             Y    + +G+   +  + ++AL H SIS   ++    + ERLEFLGD IL  ++  ++
Sbjct: 32  ESYFCFYRILGFFPRDIKVYQQALLHKSISMRSEKGRPINNERLEFLGDAILDAIVGDIV 91

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           + HF+  +EG L+   + +V  ET +++A E+ L   ++ S+       S  + +  +  
Sbjct: 92  YRHFEGRREGFLTNTRSKIVQRETLNKLAVEIGLDKLVKYST----RSSSHNSYMYGNAF 147

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYK 176
           E+ I A+YLD G +    F+++   +  +   K  R   + K++L EW+     +   ++
Sbjct: 148 EAFIGAIYLDQGYDRCKQFMEEKIFKNYIDLDKMSRKEVNFKSKLIEWSQKN-KMEVSFE 206

Query: 177 VTFRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +  +    +++P F   V I G++   G   SK+ ++Q AA   LK+
Sbjct: 207 LIEQFLDEEYNPMFHTEVRIEGISAGTGTGYSKKESQQNAAQMALKK 253


>gi|300741697|ref|ZP_07071718.1| ribonuclease III [Rothia dentocariosa M567]
 gi|311113800|ref|YP_003985022.1| ribonuclease III [Rothia dentocariosa ATCC 17931]
 gi|300380882|gb|EFJ77444.1| ribonuclease III [Rothia dentocariosa M567]
 gi|310945294|gb|ADP41588.1| ribonuclease III [Rothia dentocariosa ATCC 17931]
          Length = 228

 Score =  194 bits (494), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 90/206 (43%), Gaps = 6/206 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            L +R+G    +      +LTH S +  +   E  ERLEFLGD +L L I+  ++     
Sbjct: 10  ELLERLGVDI-DAETFLLSLTHRSYAFENPGVEHNERLEFLGDSVLSLAIAEEVYRRHPE 68

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGEL    + +VSA   +  AR+L+L   IR+    R    +   SI AD +E++  A
Sbjct: 69  LPEGELVKLHHVVVSAPALAIAARKLELGKHIRLGKGERLTGGADKDSILADTMEAIFGA 128

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            Y+  G E A   V +               RD KT+LQ    ++      Y++    GP
Sbjct: 129 TYISLGREAARELVLRLIAPMLEDEQILNSGRDWKTDLQTLVTSRSWGDVTYEIEAE-GP 187

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKR 209
           DH   +T    ++      G   SK+
Sbjct: 188 DHARVYTARAIVAKQTAGTGSGPSKK 213


>gi|271969197|ref|YP_003343393.1| ribonuclease III [Streptosporangium roseum DSM 43021]
 gi|270512372|gb|ACZ90650.1| Ribonuclease III [Streptosporangium roseum DSM 43021]
          Length = 243

 Score =  194 bits (494), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 105/206 (50%), Gaps = 6/206 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDS 65
            LE+ +     + ++LE+A+TH S ++      + ERLEFLGD +LGL+++  L+ +   
Sbjct: 16  ELERVLSVRL-DVAILERAMTHRSYAYENGGLPTNERLEFLGDSVLGLVVTDTLYRNHPD 74

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+L+    ++V+    + VAR L L  F+R+            +SI AD +E+LI +
Sbjct: 75  LPEGQLAKLRAAVVNMRALADVARTLGLGRFLRLGRGEEGTGGRDKSSILADTLEALIGS 134

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +Y++ G++ A   V   +     +S       D KT LQE   ++    PEY V   SGP
Sbjct: 135 VYVNRGLDEAFRVVHLLFDPLITRSASLGAGLDWKTSLQELTASEALGVPEYHV-EESGP 193

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKR 209
           DH   FT VV + G     G   SK+
Sbjct: 194 DHAKSFTAVVLLGGEEYGSGSGRSKK 219


>gi|167764094|ref|ZP_02436221.1| hypothetical protein BACSTE_02477 [Bacteroides stercoris ATCC
           43183]
 gi|167698210|gb|EDS14789.1| hypothetical protein BACSTE_02477 [Bacteroides stercoris ATCC
           43183]
          Length = 315

 Score =  194 bits (494), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 113/227 (49%), Gaps = 13/227 (5%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59
             Y    K +G+   N    E+AL H S S   ++    + ERLEFLGD IL  ++  ++
Sbjct: 18  ESYFCFYKILGFFPRNIRFYEQALLHKSTSIRSEKGRPLNNERLEFLGDAILDAIVGDIV 77

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           + HF+  +EG L+   + +V  ET +++A E+ L   ++ S+       S  + +  +  
Sbjct: 78  YKHFEGRREGFLTNTRSKIVQRETLNKLAVEIGLDKLVKYST----RSSSHNSYMYGNAF 133

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYK 176
           E+ I A+YLD G E    F++K   +  +   K  R   + K++L EW+  K  +   ++
Sbjct: 134 EAFIGAIYLDQGYERCKQFMEKKILKNYIDLDKMSRKEVNFKSKLIEWSQ-KTKMEVSFE 192

Query: 177 VTFRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +  +    D++P F   V I GL+   G   SK+ ++Q AA   LK+
Sbjct: 193 LIEQFLDQDYNPMFHTEVRIEGLSAGTGTGYSKKESQQNAAQMALKK 239


>gi|229818312|ref|ZP_04448593.1| hypothetical protein BIFANG_03612 [Bifidobacterium angulatum DSM
           20098]
 gi|229784182|gb|EEP20296.1| hypothetical protein BIFANG_03612 [Bifidobacterium angulatum DSM
           20098]
          Length = 246

 Score =  194 bits (494), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 68/213 (31%), Positives = 99/213 (46%), Gaps = 9/213 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
           + L + +G   +   LL +ALTH S +H +   + YERLEFLGD +L L+ +  LF    
Sbjct: 24  NELLEALGTTIS-PDLLVQALTHRSFAHEHPGAKHYERLEFLGDAVLELISTETLFRLHP 82

Query: 65  SAKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
              EGEL+      VS E  S +AR +L +  +I +         +  +SI  D+VESLI
Sbjct: 83  DMSEGELAKMRAKAVSEEALSAIARTKLHVEPYILLGHGEATQGGAQKSSILCDIVESLI 142

Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A +L+ GI+ A   V +        + +     D KT L   AH      P Y +   S
Sbjct: 143 GATFLEHGIDGARKVVHRLIDDTLAEVATEGPALDWKTSLTVKAHHLGKGEPVYHM-AVS 201

Query: 182 GPDHDPRFTVVVEISG--LAPAQGMDCSKRAAE 212
           GP++   FT  V +         G   SKR A+
Sbjct: 202 GPEYAQVFTARVSLGDDEEILGVGKGSSKRKAQ 234


>gi|329954117|ref|ZP_08295212.1| ribonuclease III [Bacteroides clarus YIT 12056]
 gi|328528094|gb|EGF55074.1| ribonuclease III [Bacteroides clarus YIT 12056]
          Length = 327

 Score =  194 bits (494), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 60/227 (26%), Positives = 111/227 (48%), Gaps = 13/227 (5%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59
             Y    + +G+   +    ++AL H S S   ++    + ERLEFLGD IL  ++  ++
Sbjct: 30  ESYFCFYRILGFFPRDIRFYQQALLHKSTSVRSEKGRPLNNERLEFLGDAILDAIVGDIV 89

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           + HF+  +EG L+   + +V  ET +++A E+ L   ++ S+       S  + +  +  
Sbjct: 90  YKHFEGRREGFLTNTRSKIVQRETLNKLAVEIGLDKLVKYST----RSSSHNSYMYGNAF 145

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYK 176
           E+ I A+YLD G E    F++K   +  +   K  R   + K++L EW+     +   ++
Sbjct: 146 EAFIGAIYLDQGYERCKQFMEKKILKNYIDLDKMSRKEVNFKSKLIEWSQKN-KMEVSFE 204

Query: 177 VTFRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +  +    D++P F   V I  L+   G   SK+ ++Q AA   LK+
Sbjct: 205 LIEQFLDRDYNPMFHTEVRIESLSAGTGTGYSKKESQQNAAQMALKK 251


>gi|317474593|ref|ZP_07933867.1| ribonuclease III [Bacteroides eggerthii 1_2_48FAA]
 gi|316909274|gb|EFV30954.1| ribonuclease III [Bacteroides eggerthii 1_2_48FAA]
          Length = 306

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 62/227 (27%), Positives = 111/227 (48%), Gaps = 13/227 (5%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59
             Y    K +G+   N    ++AL H S S   ++    + ERLEFLGD IL  ++  ++
Sbjct: 35  ESYFCFYKILGFFPRNIRFYQQALLHKSTSVRSEKGRPLNNERLEFLGDAILDAIVGDIV 94

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           + HF+  +EG L+   + +V  ET +++A E+ L   ++ S+       S  + +  +  
Sbjct: 95  YKHFEGRREGFLTNTRSKIVQRETLNKLAVEIGLDKLVKYST----RSSSHNSYMYGNAF 150

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYK 176
           E+LI A+YLD G E    F+++   +  +   K  R   + K++L EW+     +   ++
Sbjct: 151 EALIGAIYLDQGYERCKQFMEEKILKNYIDLDKMSRKEVNFKSKLIEWSQKN-KMEVSFE 209

Query: 177 VTFRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +  +    D++P F   V I  L    G   SK+ ++Q AA   LK+
Sbjct: 210 LIEQFLDRDYNPMFHTEVLIENLPAGTGTGYSKKESQQNAAQMALKK 256


>gi|126655310|ref|ZP_01726749.1| Ribonuclease III [Cyanothece sp. CCY0110]
 gi|126622789|gb|EAZ93494.1| Ribonuclease III [Cyanothece sp. CCY0110]
          Length = 240

 Score =  193 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 106/205 (51%), Gaps = 7/205 (3%)

Query: 19  NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           N  LL+ ALTH +IS     +Y++LEF+GD ++ L+ + +L   +     GE +   + L
Sbjct: 28  NLELLDLALTHPTISREN--NYQQLEFVGDSVIRLVSAEILLETYPDELVGEFAAIRSIL 85

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIEVAGT 137
           VS  T ++ A +  L  ++ ++  + +D      S  AD  E+++ ALYL    + +   
Sbjct: 86  VSDRTLAEFAEQYGLDRYLLMADSVAQDTM-GRVSWLADAFEAVLGALYLSTKNMTLVRP 144

Query: 138 FVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVE 194
           ++D    ++A  ++S   R++ K  LQEW  A++ + PEY+VT +     HD RF   V 
Sbjct: 145 WLDPLLLKKAAEIRSDPARQNYKDALQEWTQAQYKILPEYRVTEQDKDRGHDERFFAEVS 204

Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEV 219
           +       G   SK+ AEQ AA + 
Sbjct: 205 LKDRKLGSGYGRSKKMAEQAAAKDA 229


>gi|28572359|ref|NP_789139.1| ribonuclease III [Tropheryma whipplei TW08/27]
 gi|28410490|emb|CAD66876.1| ribonuclease III [Tropheryma whipplei TW08/27]
          Length = 215

 Score =  193 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 65/196 (33%), Positives = 99/196 (50%), Gaps = 9/196 (4%)

Query: 20  RSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
             LL  A  H S S  +   ++ ERLEFLGD +LGL++S  LF       EG+LS   + 
Sbjct: 10  PGLLRTAFVHKSFSFENGACQNNERLEFLGDAVLGLVVSHYLFETCPEYTEGQLSAARSY 69

Query: 78  LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137
           +VS  + +Q+A+EL+L  F+ +    +       TS+ AD++ESLI A+ +D G E A  
Sbjct: 70  IVSGTSIAQIAKELNLGQFMLLGKGEKLAGGMDKTSLLADLLESLIGAVMVDQGFESARD 129

Query: 138 FVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
           FV     ++  + G+F   D KT+LQ+    +      Y+V    GP H   F   V ++
Sbjct: 130 FVLALVGEKLRQVGEFSVDDPKTKLQKLTRTQL----VYEVV-TEGPPHSRTFKASVIVN 184

Query: 197 GLAPAQGMDCSKRAAE 212
                 G   SK+ A+
Sbjct: 185 EKRFF-GQGSSKKQAQ 199


>gi|108804222|ref|YP_644159.1| RNAse III [Rubrobacter xylanophilus DSM 9941]
 gi|108765465|gb|ABG04347.1| RNAse III [Rubrobacter xylanophilus DSM 9941]
          Length = 233

 Score =  193 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 66/204 (32%), Positives = 96/204 (47%), Gaps = 12/204 (5%)

Query: 22  LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
           L ++ALTH S++  Y  S  RLEFLGD IL   ++ L+F+ +    EG+L+     LV  
Sbjct: 28  LRKRALTHPSVADPYH-SNGRLEFLGDSILNHRVAELVFHSYPELLEGDLTRIRAHLVRK 86

Query: 82  ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141
              + V R   L   I  S            S+ AD VE++I A YL     +    +D+
Sbjct: 87  SFLASVGRSEGLEEMIESSV--------INDSVIADTVEAIIGAAYLI-DKNLVLRTIDE 137

Query: 142 YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201
            +    + + +  RD KT LQE   A+    P Y+V  + GP H P F   V + G   A
Sbjct: 138 IFNPAEVDTDEL-RDWKTLLQETLQAEGL-RPTYRVISKQGPPHRPVFISGVSVDGEEVA 195

Query: 202 QGMDCSKRAAEQVAAAEVLKREGI 225
            G   S + +EQ AA   L+  G+
Sbjct: 196 TGRGSSIKQSEQAAARAALEILGV 219


>gi|28493529|ref|NP_787690.1| ribonuclease III [Tropheryma whipplei str. Twist]
 gi|81437751|sp|Q83FY2|RNC_TROWT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|90101654|sp|Q83I82|RNC_TROW8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|28476571|gb|AAO44659.1| ribonuclease III [Tropheryma whipplei str. Twist]
          Length = 223

 Score =  193 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 65/196 (33%), Positives = 99/196 (50%), Gaps = 9/196 (4%)

Query: 20  RSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
             LL  A  H S S  +   ++ ERLEFLGD +LGL++S  LF       EG+LS   + 
Sbjct: 18  PGLLRTAFVHKSFSFENGACQNNERLEFLGDAVLGLVVSHYLFETCPEYTEGQLSAARSY 77

Query: 78  LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137
           +VS  + +Q+A+EL+L  F+ +    +       TS+ AD++ESLI A+ +D G E A  
Sbjct: 78  IVSGTSIAQIAKELNLGQFMLLGKGEKLAGGMDKTSLLADLLESLIGAVMVDQGFESARD 137

Query: 138 FVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
           FV     ++  + G+F   D KT+LQ+    +      Y+V    GP H   F   V ++
Sbjct: 138 FVLALVGEKLRQVGEFSVDDPKTKLQKLTRTQL----VYEVV-TEGPPHSRTFKASVIVN 192

Query: 197 GLAPAQGMDCSKRAAE 212
                 G   SK+ A+
Sbjct: 193 EKRFF-GQGSSKKQAQ 207


>gi|195119378|ref|XP_002004208.1| GI19789 [Drosophila mojavensis]
 gi|193909276|gb|EDW08143.1| GI19789 [Drosophila mojavensis]
          Length = 1297

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 96/228 (42%), Gaps = 14/228 (6%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
              +  E  IG  F +  LL +A T  S   +H    S +RLEFLGD +L L+ S  L+ H
Sbjct: 934  DLTRFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRH 993

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG LS+  +SLV+  T + V  +L +  F               T  +AD++E+ 
Sbjct: 994  FPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKFAVY----ANPKADLKTKDRADLLEAF 1049

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKF------GVTPE 174
            + ALY+D G+     F       R       +   D K++LQ+               P 
Sbjct: 1050 LGALYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPY 1109

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YKV   SGP +   + V V       A     S + AE  AA + L+ 
Sbjct: 1110 YKVVEASGPTNTRVYKVAVYFRSKRLATASGSSIQQAEMNAAKQALEN 1157



 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 3/136 (2%)

Query: 29  HSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVA 88
           H ++S+      ERLEFLGD ++  L S  LF  F   +EG L+    ++V  +  + +A
Sbjct: 783 HETVSNIT--HNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLA 840

Query: 89  RELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL 148
           ++L L  F+  +          +    A+  E+L+ AL LDGGI+VA         ++  
Sbjct: 841 KKLQLEEFMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIKVADEVFTDALFRQDD 900

Query: 149 KSGKFRRD-AKTELQE 163
           K     ++  +  LQE
Sbjct: 901 KLLAIWKNLPEHPLQE 916


>gi|170594121|ref|XP_001901812.1| RNase3 domain containing protein [Brugia malayi]
 gi|158590756|gb|EDP29371.1| RNase3 domain containing protein [Brugia malayi]
          Length = 1329

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 61/228 (26%), Positives = 99/228 (43%), Gaps = 11/228 (4%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
             + LEK IG  F +  +L KA T  +   ++      +RLEFLGD +L L+ +  L+ HF
Sbjct: 1017 LTELEKNIGITFKHIRVLAKAFTRRNIGFNNLTLGHNQRLEFLGDTVLQLITTDYLYKHF 1076

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS-FMTSIQADVVESL 122
                EG LS+    LVS  T S +  ++ +  ++     ++K          +AD+VE+ 
Sbjct: 1077 PYHHEGHLSILRTCLVSNRTQSVICDDIGMTKYLVTPKVMQKSGMPVLRVKDKADLVEAF 1136

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWA----HAKFGVT--PE 174
            + ALY+D G +    F    +  R       +   D K++LQ+          G    PE
Sbjct: 1137 LGALYVDRGFDYCKVFCRICFFPRLKFFIIAQHWNDPKSQLQQCCLTLRQMDGGEPDIPE 1196

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            Y+     GP +   + V V       A G   + + A+  AA   L +
Sbjct: 1197 YRTIAVEGPTNTRIYKVAVYFRKKRLAVGCGHTMQLAQMRAAENALIK 1244



 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 72/187 (38%), Gaps = 58/187 (31%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQES--------------------YERL------ 43
           ++RI Y F NRSLLE ALTH S   +Y  +                    ++RL      
Sbjct: 786 QERIHYVFKNRSLLELALTHPSYRTNYGTNSDHARNTLNNCGVRSSKQRVHDRLVQQQLS 845

Query: 44  --------------------------------EFLGDRILGLLISTLLFNHFDSAKEGEL 71
                                           EFLGD ++  + +  LF  F    EG L
Sbjct: 846 AKKRGFHTLMEIMSKLGSKKAEQSPLNHNERLEFLGDAVIEFITTIHLFYMFSELDEGGL 905

Query: 72  SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131
           +   +++V  +  + +A+++ L  F+  +        S +    A+  E+++AA+YLD G
Sbjct: 906 ATYRSTMVQNKNLALLAKKIGLDEFMLYAHGPDLCHESDLRHAMANAFEAMMAAIYLDAG 965

Query: 132 IEVAGTF 138
           I+     
Sbjct: 966 IDECDRI 972


>gi|119025240|ref|YP_909085.1| ribonuclease III [Bifidobacterium adolescentis ATCC 15703]
 gi|118764824|dbj|BAF39003.1| ribonuclease III [Bifidobacterium adolescentis ATCC 15703]
          Length = 262

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 72/220 (32%), Positives = 108/220 (49%), Gaps = 10/220 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
           + L + +G       LL +ALTH S SH ++  ++YERLEFLGD +L L+ +  L+    
Sbjct: 4   NVLLEALGTTIE-PDLLVEALTHRSFSHEHEGAKNYERLEFLGDAVLELVSTETLYKVHP 62

Query: 65  SAKEGELSVRFNSLVSAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
              EG+L+      VS E+ S++ARE L +  +I +     +   +  +SI  D+VESLI
Sbjct: 63  DMNEGQLAKMRAKAVSEESLSKIAREKLHVGPYILLGHGEAEQGGADKSSILCDIVESLI 122

Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A ++  GI+ A   V          + +     D KT L   AH      P Y+ T  +
Sbjct: 123 GATFIQHGIDEARRVVHHLVDDTLAEVATEGPALDWKTSLTVKAHEMGLPDPHYQ-TSVA 181

Query: 182 GPDHDPRFTVVVEI--SGLAPAQGMDCSKRAAEQVAAAEV 219
           GP++   FT    +   G     G   SKR A Q+AAAE+
Sbjct: 182 GPEYALEFTARAILGDGGEVIGVGTGSSKRKA-QLAAAEM 220


>gi|189465040|ref|ZP_03013825.1| hypothetical protein BACINT_01384 [Bacteroides intestinalis DSM
           17393]
 gi|189437314|gb|EDV06299.1| hypothetical protein BACINT_01384 [Bacteroides intestinalis DSM
           17393]
          Length = 291

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 62/229 (27%), Positives = 114/229 (49%), Gaps = 13/229 (5%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIST 57
               Y    K +G+   N  L ++AL H S S   ++    + ERLEFLGD IL  ++  
Sbjct: 16  DKESYLCFYKILGFYPRNIQLYQQALLHKSTSIRSEKGRPLNNERLEFLGDAILDAIVGD 75

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
           +++ HF+  +EG L+   + +V  ET +++A E+ L   ++ S+       S  + +  +
Sbjct: 76  IVYKHFEGRREGFLTNTRSKIVQRETLNKLAVEIGLDKLVKYSA----RSSSHNSYMYGN 131

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPE 174
             E+ I A+YLD G +    F+++   +  +   K  R   + K++L EW+  K  V   
Sbjct: 132 AFEAFIGAIYLDQGYKRCKRFMEEKIFKNYIDLDKMSRKEVNFKSKLIEWSQ-KSKVEVS 190

Query: 175 YKVTFRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +++  +    D++P F   + I G+   +G   SK+ ++Q AA   LK+
Sbjct: 191 FELIEQFLDEDYNPMFHTEIRIEGIPAGKGTGYSKKESQQNAAQAALKK 239


>gi|119713601|gb|ABL97652.1| ribonuclease III [uncultured marine bacterium EB0_39H12]
          Length = 218

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 112/224 (50%), Gaps = 14/224 (6%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M    Y+ LE    Y+F +  L + ALTH S+S     + ERLEFLGD IL L +S  LF
Sbjct: 1   MKNSAYTNLE----YSFQDEELFQLALTHKSLSSH---NNERLEFLGDAILNLYVSERLF 53

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N + + KEG+L+    S+VS E   +VA  L+L++ I++             SI  +V+E
Sbjct: 54  NTYGNLKEGKLTRFKASIVSRENLHRVAINLELSNHIKLGKGESLQGN----SILGNVLE 109

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           +LI A++LD         +D  +K   LK    +  +D K+ LQE    ++   P Y + 
Sbjct: 110 ALIGAIFLDSDYSETKNVLDNIFKDDFLKLVEEEELKDPKSTLQELIQKQYQSLPIYSLN 169

Query: 179 FRSGPDHDPRFTVVVE-ISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            +     + +F V    + G    QG   +++ AE  AA+ +L+
Sbjct: 170 EQISDKKENQFEVTCSVVEGNLVTQGKGNTRKGAELNAASNMLE 213


>gi|207109381|ref|ZP_03243543.1| ribonuclease III [Helicobacter pylori HPKX_438_CA4C1]
          Length = 197

 Score =  192 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 67/180 (37%), Positives = 99/180 (55%), Gaps = 4/180 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y+TLEK +GY+F ++ LLE+ALTH S       + ERLEFLGD +LGL+I  LL++ F  
Sbjct: 20  YTTLEKALGYSFKDKRLLEQALTHKSC--KLALNNERLEFLGDAVLGLVIGELLYHKFYQ 77

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EG+LS    S+VSA+  +++A+ + L  ++RVSS           SI +   E+L+A 
Sbjct: 78  YDEGKLSKLRASIVSAQGFTKLAKVISLQDYLRVSSSEEISKGREKPSILSSAFEALMAG 137

Query: 126 LYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           +YL+ G+      +     +    L       D KT LQE   A+F V P Y++    GP
Sbjct: 138 VYLEAGLAKVRKIMQNLLNRAYKRLDLEHLSVDYKTALQELTQAQFCVIPTYQLLKEKGP 197


>gi|172038048|ref|YP_001804549.1| ribonuclease III [Cyanothece sp. ATCC 51142]
 gi|171699502|gb|ACB52483.1| ribonuclease III [Cyanothece sp. ATCC 51142]
          Length = 242

 Score =  192 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 63/222 (28%), Positives = 113/222 (50%), Gaps = 10/222 (4%)

Query: 5   RYSTLEKRIGY---AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +  T  +++G    +  N  LL+ ALTH +IS     +Y++LEF+GD ++ L+ + +L  
Sbjct: 13  QLETCLQKLGVWDTSVVNLELLDLALTHPTISRET--NYQQLEFVGDSVIRLVSAEILLE 70

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +     GE +   + LVS  T ++ A +  L  ++ ++  + +D      S  AD  E+
Sbjct: 71  TYPDELVGEFAAIRSILVSDRTLAEFAEQYGLDRYLLMADSVAQDTM-GRVSWLADAFEA 129

Query: 122 LIAALYLD-GGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++ ALYL    + +   ++D    ++A  ++S   R++ K  LQEW  A++ + P+Y+VT
Sbjct: 130 VLGALYLSTKNMTLVRPWLDPLLLKKAAEIRSDPARQNYKDALQEWTQAQYKILPDYRVT 189

Query: 179 FRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            +     HD RF   V +       G   SK+ AEQ AA + 
Sbjct: 190 EQHKDRGHDERFFAEVSLKDRKLGSGYGRSKKMAEQAAAKDA 231


>gi|171741390|ref|ZP_02917197.1| hypothetical protein BIFDEN_00473 [Bifidobacterium dentium ATCC
           27678]
 gi|171277004|gb|EDT44665.1| hypothetical protein BIFDEN_00473 [Bifidobacterium dentium ATCC
           27678]
          Length = 229

 Score =  192 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 70/207 (33%), Positives = 101/207 (48%), Gaps = 9/207 (4%)

Query: 20  RSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
             LL +ALTH S SH +   ++YERLEFLGD +L L+ +  L+       EG+L+     
Sbjct: 16  PELLVEALTHRSFSHEHPGAKNYERLEFLGDAVLELVSTETLYAAHPDMTEGQLAKMRAK 75

Query: 78  LVSAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
            VS E+ S +ARE L +  +I + +   +   +  +SI  D+VESLI A ++  GI+ A 
Sbjct: 76  AVSEESLSHIAREKLHVGPYILLGNGEAEQHGAEKSSILCDIVESLIGATFIQHGIDEAR 135

Query: 137 TFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
             V          + +     D KT L   AH      P Y++   SGP++   FT    
Sbjct: 136 KVVHHLVDDTLAEVATEGPALDWKTSLTVKAHDMGLGEPYYRM-SVSGPEYAQVFTAKAM 194

Query: 195 ISG--LAPAQGMDCSKRAAEQVAAAEV 219
           + G       G   SKR A Q+AAAE 
Sbjct: 195 LEGSDEVIGIGKGSSKRKA-QLAAAEA 220


>gi|71083743|ref|YP_266463.1| ribonuclease III [Candidatus Pelagibacter ubique HTCC1062]
 gi|91763221|ref|ZP_01265185.1| ribonuclease III [Candidatus Pelagibacter ubique HTCC1002]
 gi|90101634|sp|Q4FLS9|RNC_PELUB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|71062856|gb|AAZ21859.1| ribonuclease III [Candidatus Pelagibacter ubique HTCC1062]
 gi|91717634|gb|EAS84285.1| ribonuclease III [Candidatus Pelagibacter ubique HTCC1002]
          Length = 222

 Score =  192 bits (489), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 73/205 (35%), Positives = 114/205 (55%), Gaps = 3/205 (1%)

Query: 17  FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           F+++ +  K+LTH S       + E++EFLGDR+LGL+I+  L   +   KEG L  +F 
Sbjct: 16  FSDQKIFIKSLTHKSF--DSINNNEKIEFLGDRVLGLIIAKKLLELYPDEKEGVLDKKFA 73

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           SLV+ + C ++A++++L  +I V +   K +      I AD +E+LI A+YLD G+    
Sbjct: 74  SLVNKKKCLEIAKKIELEKYILVLNPKNKKI-EIEDKIVADCLEALIGAIYLDKGLNFTE 132

Query: 137 TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
            F+   W +    S   + DAKT+LQE++   F V P YK+   +GP H P F V V++ 
Sbjct: 133 RFILNLWSEHITASVITQIDAKTKLQEYSLKIFKVLPIYKLISNTGPRHKPLFKVAVKLK 192

Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLK 221
                     SK+ AEQ AA+  L+
Sbjct: 193 NTKFFTAEGTSKKDAEQNAASLCLQ 217


>gi|282856664|ref|ZP_06265932.1| ribonuclease III [Pyramidobacter piscolens W5455]
 gi|282585513|gb|EFB90813.1| ribonuclease III [Pyramidobacter piscolens W5455]
          Length = 231

 Score =  192 bits (489), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 72/207 (34%), Positives = 104/207 (50%), Gaps = 9/207 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNH 62
                ++RIGY F++ +LLE+ALTHSS +H        ERLEFLGD +L +LIS  LF  
Sbjct: 11  DLLEFQRRIGYEFSDPALLEEALTHSSYAHERGVPFWNERLEFLGDAVLEVLISEELFRA 70

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
              A EG+++    SLV  E  S             +         S   ++  D VE+L
Sbjct: 71  RPDASEGQMTRERASLVREEVLSAWGHS---LGLDGLLLLGMGQRGSASENMIGDAVEAL 127

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           I ALYLDGG+E A  F+++    R   + + + D K+ LQ     + G  P Y++  R G
Sbjct: 128 IGALYLDGGLEQARAFLNR----RPRGAAREQLDPKSRLQILCQERNGPAPYYELLERKG 183

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKR 209
           P+HDP F     + G   A+G   S++
Sbjct: 184 PEHDPIFIARALLDGRELARGRGTSRK 210


>gi|312069951|ref|XP_003137921.1| RNase3 domain-containing protein [Loa loa]
 gi|307766916|gb|EFO26150.1| RNase3 domain-containing protein [Loa loa]
          Length = 1297

 Score =  192 bits (489), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 61/228 (26%), Positives = 99/228 (43%), Gaps = 11/228 (4%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
             + LEK IG  F +  +L KA T  +   ++      +RLEFLGD +L L+ +  L+ HF
Sbjct: 987  LTELEKSIGVTFKHIRVLAKAFTRRNIGFNNLTLGHNQRLEFLGDTVLQLITTDYLYKHF 1046

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS-FMTSIQADVVESL 122
                EG LS+    LVS  T S +  ++ +  ++     ++K          +AD+VE+ 
Sbjct: 1047 PYHHEGHLSILRTCLVSNRTQSVICDDIGMTKYLVTPKVMQKSGLPILRVKDKADLVEAF 1106

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWA----HAKFGVT--PE 174
            + ALY+D G +    F    +  R       +   D K++LQ+          G    PE
Sbjct: 1107 LGALYVDRGFDYCKVFCRICFFPRLKFFIIAQHWNDPKSQLQQCCLTLRQMDGGEPDIPE 1166

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            Y+     GP +   + V V       A G   + + A+  AA   L +
Sbjct: 1167 YRTIAVEGPTNTRIYKVAVYFRKKRLAVGCGHTMQLAQMRAAENALIK 1214



 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 72/187 (38%), Gaps = 58/187 (31%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQES--------------------YERL------ 43
           ++RI Y F NRSLLE ALTH S   +Y  +                    ++RL      
Sbjct: 756 QERIHYVFKNRSLLELALTHPSYRTNYGTNSDHARNTLNNCGVRSSKQRVHDRLVQQQLS 815

Query: 44  --------------------------------EFLGDRILGLLISTLLFNHFDSAKEGEL 71
                                           EFLGD ++  + +  LF  F    EG L
Sbjct: 816 AKKRGFHTLLEIMSKLGSKKAEQSPLNHNERLEFLGDAVIEFITTIHLFYMFSELDEGGL 875

Query: 72  SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131
           +   +++V  +  + +A+++ L  F+  +        S +    A+  E+++AA+YLD G
Sbjct: 876 ATYRSTMVQNKNLAVLAKKIGLDEFMLYAHGPDLCHESDLRHAMANAFEAMMAAIYLDAG 935

Query: 132 IEVAGTF 138
           I+     
Sbjct: 936 IDECDRI 942


>gi|313844119|ref|YP_004061782.1| hypothetical protein OlV1_149c [Ostreococcus lucimarinus virus
           OlV1]
 gi|312599504|gb|ADQ91526.1| hypothetical protein OlV1_149c [Ostreococcus lucimarinus virus
           OlV1]
          Length = 230

 Score =  192 bits (488), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 111/229 (48%), Gaps = 11/229 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLIST 57
           M+      +EK +G    N SL  +A TH S    Y+   ES+E LEF+GD +LG +I+ 
Sbjct: 1   MN-FNQQDIEKLVGTKIKNLSLYHRAFTHKSALKEYEQFNESFETLEFMGDSVLGFIITK 59

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF+ ++  +EG L+     LV +ET + +A ++ L + + +     ++  +    I  D
Sbjct: 60  FLFDRYEERQEGFLTKARTKLVRSETLADIALKMGLNNMVLMDEKGMRNNWNNNPKILED 119

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYW-KQRALKSGKFRRD--AKTELQEWAHAKFGVTPE 174
           V E+L+ A+Y+D G+  A  FV + +     +   K   D   K  L ++        PE
Sbjct: 120 VFEALVGAIYMDLGLLHAKEFVLRIYNDPNFIDLNKIMIDDNFKDHLMKYCQIMNIPLPE 179

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           Y+V       H+  F +   I+G    +G   SK+ AEQ+AA    ++ 
Sbjct: 180 YRVVG----HHEGIFYIDTYINGQFGGRGEAKSKKQAEQLAARAFFEQL 224


>gi|282896739|ref|ZP_06304747.1| Ribonuclease III [Raphidiopsis brookii D9]
 gi|281198457|gb|EFA73345.1| Ribonuclease III [Raphidiopsis brookii D9]
          Length = 276

 Score =  192 bits (488), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 56/199 (28%), Positives = 89/199 (44%), Gaps = 8/199 (4%)

Query: 17  FANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           F +  LL +ALTH S ++      +  ERLEFLGD IL  +    L++ +    E EL+ 
Sbjct: 56  FEDEKLLRQALTHRSYANENPSEGDHNERLEFLGDAILNFISGEYLYSRYPQKGEDELTR 115

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD--GG 131
           R ++LV  +  ++ A E+ L   +R+     +D      ++ +   E++I A YLD    
Sbjct: 116 RRSALVEEKQLAKFALEVGLNVKMRLGKGTIQDGGYQNPNLLSSTFEAIIGAYYLDNNCN 175

Query: 132 IEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGV-TPEYKVTFRSGPDHDPR 188
           IE     V+  +    +     ++  D+K   QEW   K     P+YK     G  H P 
Sbjct: 176 IEAVKLAVEPLFDFVSQHTIESRYNVDSKNRFQEWVQKKLCANPPKYKTQQIGGSPHLPE 235

Query: 189 FTVVVEISGLAPAQGMDCS 207
           F   V + G    QG   +
Sbjct: 236 FFSRVLVDGKEFGQGNGKN 254


>gi|195026766|ref|XP_001986330.1| GH21300 [Drosophila grimshawi]
 gi|193902330|gb|EDW01197.1| GH21300 [Drosophila grimshawi]
          Length = 1324

 Score =  192 bits (488), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 96/228 (42%), Gaps = 14/228 (6%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
              +  E  +G  F +  LL +A T  S   +H    S +RLEFLGD +L L+ S  L+ H
Sbjct: 966  DLTKFEDSVGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRH 1025

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG LS+  +SLV+  T + V  +L +  +               T  +AD++E+ 
Sbjct: 1026 FPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPQYAVY----ANPKADLKTKDRADLLEAF 1081

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKF------GVTPE 174
            + ALY+D G+     F       R       +   D K++LQ+               P 
Sbjct: 1082 LGALYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPY 1141

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YKV   +GP +   + V V       A     S + AE  AA + L+ 
Sbjct: 1142 YKVVEATGPTNTRVYKVAVYFRSKRLATASGSSIQQAEMNAAKQALEN 1189



 Score = 89.4 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 53/211 (25%), Positives = 81/211 (38%), Gaps = 56/211 (26%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSY-------------------------------- 36
           LE+ IGY F NR LL+ ALTH S   +Y                                
Sbjct: 738 LEESIGYKFKNRYLLQLALTHPSYKENYGTNPDHARNSLTNCGIRQPEYGDRKIHYMNTR 797

Query: 37  --------------QESYERL---------EFLGDRILGLLISTLLFNHFDSAKEGELSV 73
                          + +E L         EFLGD ++  L S  LF  F   +EG L+ 
Sbjct: 798 KRGINTLVSIMSRFGKDHETLSNITHNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLAT 857

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
              ++V  +  + +A++L L  F+  +          +    A+  E+L+ AL LDGGI+
Sbjct: 858 YRAAIVQNQHLALLAKKLQLEEFMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIK 917

Query: 134 VAGTFVDKYWKQRALKSGKFRRD-AKTELQE 163
           VA         ++  K  K  ++  +  LQE
Sbjct: 918 VADEVFTDALFRQDDKLLKIWKNLPEHPLQE 948


>gi|332299505|ref|YP_004441426.1| Ribonuclease 3 [Porphyromonas asaccharolytica DSM 20707]
 gi|332176568|gb|AEE12258.1| Ribonuclease 3 [Porphyromonas asaccharolytica DSM 20707]
          Length = 259

 Score =  192 bits (488), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 100/225 (44%), Gaps = 14/225 (6%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60
             +TL  RIG       L   A+ H S S   +E    + ERLEFLGD +L   I T L+
Sbjct: 27  NLTTLFDRIGIVPVRTDLYLLAMRHRSCSIVGEEGEKLNNERLEFLGDAVLEASICTYLY 86

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
               +  EGELS   +SLVS    ++V R L L  +I +      +       I  + VE
Sbjct: 87  QLHPTWDEGELSKCKSSLVSRPVNNEVGRRLHLERYIIMVPSALDNSVD----IYGNTVE 142

Query: 121 SLIAALYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           +LI A+YLD G     E    F+   ++     +    ++ K+EL EW         E++
Sbjct: 143 ALIGAIYLDQGYARTQEFVRDFILPTYRDMQAHTVASIQNYKSELIEWVQKHHLSH-EFR 201

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +       HD  F   V I G    +G   SK+ A+Q AA + LK
Sbjct: 202 LEEHEMAPHD-HFIYSVWIDGKPVGRGAGSSKKRAQQEAARDTLK 245


>gi|194757473|ref|XP_001960989.1| GF13644 [Drosophila ananassae]
 gi|190622287|gb|EDV37811.1| GF13644 [Drosophila ananassae]
          Length = 1303

 Score =  191 bits (487), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 97/228 (42%), Gaps = 17/228 (7%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
              +  E+ IG  F +  LL +A T  S   +H    S +RLEFLGD +L L+ S  L+ H
Sbjct: 954  ELTKFEESIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRH 1013

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG LS+  +SLV+  T + V  +L +  +               T  +AD++E+ 
Sbjct: 1014 FPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPQY-------ANPKADLKTKDRADLLEAF 1066

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKF------GVTPE 174
            + ALY+D G+     F       R       +   D K++LQ+               P 
Sbjct: 1067 LGALYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPY 1126

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YKV   SGP +   + V V       A     S + AE  AA + L+ 
Sbjct: 1127 YKVVEASGPTNTRVYKVAVYFRSKRLATSNGSSIQQAEMNAAKQALEN 1174



 Score = 80.9 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 69/156 (44%), Gaps = 8/156 (5%)

Query: 29  HSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVA 88
           H ++S+      ERLEFLGD ++  L S  LF  F   +EG L+    ++V  +  + +A
Sbjct: 803 HETVSNIT--HNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLA 860

Query: 89  RELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL 148
           ++L L  F+  +          +    A+  E+L+ AL LDGGI+VA         ++  
Sbjct: 861 KKLQLEEFMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIKVADEVFTDALFRQDE 920

Query: 149 KSGKFRRD-AKTELQEWAH---AKFGVTPEYKVTFR 180
           K     ++  +  LQE         G    Y+V   
Sbjct: 921 KLLNIWKNLPEHPLQE--QEPLGDRGCIESYRVLKE 954


>gi|326693698|ref|ZP_08230703.1| ribonuclease III [Leuconostoc argentinum KCTC 3773]
          Length = 240

 Score =  191 bits (487), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 53/209 (25%), Positives = 91/209 (43%), Gaps = 8/209 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           L       F +  LL +ALT  +  + +       Y+RLEFLGD ++ + ++  LF  + 
Sbjct: 17  LRTEFNIVFHDEDLLLEALTQRNYLNEHPNEPGRDYQRLEFLGDSVMQVSVAEYLFKRYP 76

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EG+L+    ++V   + +  +R + L   +R+             S+  D+ E+ I 
Sbjct: 77  NWHEGQLTEMRIAMVQTRSFAHFSRLVHLNEAVRLGKGEEMSGARERDSLLEDIWEAFIG 136

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRS- 181
           ALYLD G +    F+++     A+ +G F R  D K+ LQE       V  +Y+      
Sbjct: 137 ALYLDQGADAVQEFLERTLFA-AIDTGFFDRFIDFKSRLQEKLQVNGAVVIDYQTEREQA 195

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
             D    F   V + G   A+G   S + 
Sbjct: 196 MADKTQVFEASVSVDGHELARGTGKSIKD 224


>gi|314055212|ref|YP_004063550.1| ribonuclease III [Ostreococcus tauri virus 2]
 gi|313575103|emb|CBI70116.1| ribonuclease III [Ostreococcus tauri virus 2]
          Length = 230

 Score =  191 bits (487), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 65/229 (28%), Positives = 111/229 (48%), Gaps = 11/229 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLIST 57
           M+      +E+ +G    N S  ++A TH S    Y+   ES+E LEF+GD +LG +I+ 
Sbjct: 1   MN-FNQQDIEQLVGTKIKNLSFYQRAFTHKSALKEYEQFNESFETLEFMGDSVLGFIITK 59

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF+ ++  +EG L+     LV +ET + +A +L L + + +    +++  +    I  D
Sbjct: 60  FLFDRYEERQEGFLTKARTKLVRSETLADIALKLGLNNMVLMDEKGQRNQWNNNPKILED 119

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYW-KQRALKSGKFRRD--AKTELQEWAHAKFGVTPE 174
           V E+L+ A+Y+D G+  A  FV + +   R +       D   K  L  +        PE
Sbjct: 120 VFEALVGAIYMDLGLLHAKEFVLRIYNDPRYINLNAIMIDDNFKDHLMRYCQIMNFQLPE 179

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           Y+V       H+  F +   I+G    +G   SK+ AEQ+AA    ++ 
Sbjct: 180 YRVVG----HHEGIFYIDAYINGQFGGRGQAKSKKQAEQLAARAFFEQL 224


>gi|210633204|ref|ZP_03297720.1| hypothetical protein COLSTE_01633 [Collinsella stercoris DSM 13279]
 gi|210159209|gb|EEA90180.1| hypothetical protein COLSTE_01633 [Collinsella stercoris DSM 13279]
          Length = 241

 Score =  191 bits (487), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 71/193 (36%), Positives = 97/193 (50%), Gaps = 3/193 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFN 61
            +    ++  G AF + SLL  A+TH S         SYERLEFLGD ILG +++  LF 
Sbjct: 5   EKLERAQEICGRAFNDTSLLRSAITHPSAVEGEPVSASYERLEFLGDSILGSVVALSLFK 64

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +    EG+L+    SLVS  T S V REL +   I + +  +      M S   +V E+
Sbjct: 65  TYGDFDEGKLTRLKVSLVSGATLSDVGRELGIDQVIILGASEQGTGARGMHSALENVYEA 124

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQR-ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           L+ ALYLDGG E A  F+ +  K   A +  +   + K+ LQE   +     P YKV   
Sbjct: 125 LVGALYLDGGWEAAEAFIMRTLKPHLATERAEHPSNPKSFLQECVQSDHMEAPSYKVVGE 184

Query: 181 SGPDHDPRFTVVV 193
            GP H+P FT V 
Sbjct: 185 EGPAHEPTFTAVA 197


>gi|195581370|ref|XP_002080507.1| GD10519 [Drosophila simulans]
 gi|194192516|gb|EDX06092.1| GD10519 [Drosophila simulans]
          Length = 1310

 Score =  191 bits (487), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 96/228 (42%), Gaps = 14/228 (6%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
              +  E  IG  F +  LL +A T  S   +H    S +RLEFLGD +L L+ S  L+ H
Sbjct: 958  ELTKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRH 1017

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG LS+  +SLV+  T + V  +L +  +               T  +AD++E+ 
Sbjct: 1018 FPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYAVY----ANPKADLKTKDRADLLEAF 1073

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKF------GVTPE 174
            + ALY+D G+     F       R       +   D K++LQ+               P 
Sbjct: 1074 LGALYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPY 1133

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YKV   SGP +   + V V       A     S + AE  AA + L+ 
Sbjct: 1134 YKVVEASGPTNTRVYKVAVYFRSKRLATSSGSSIQQAEMNAAKQALEN 1181



 Score = 78.2 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 6/146 (4%)

Query: 39  SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
             ERLEFLGD ++  L S  LF  F   +EG L+    ++V  +  + +A++L L  F+ 
Sbjct: 815 HNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEEFML 874

Query: 99  VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-A 157
            +          +    A+  E+L+ AL LDGGI+VA         ++  K     ++  
Sbjct: 875 YAHGSDLCHELELRHAMANCFEALMGALLLDGGIKVADEVFTDALFRQDEKLLSIWKNLP 934

Query: 158 KTELQEWAH---AKFGVTPEYKVTFR 180
           +  LQE              Y+V   
Sbjct: 935 EHPLQE--QEPLGDRSCIDSYRVLKE 958


>gi|269101846|ref|ZP_06154543.1| ribonuclease III [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268161744|gb|EEZ40240.1| ribonuclease III [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 178

 Score =  191 bits (486), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 3/163 (1%)

Query: 51  LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110
           +  +I+  L++ F +  EG++S    +LV  +T +++ RE +L   + +     K     
Sbjct: 1   MSFVIADDLYHRFPNVDEGDMSRMRATLVRGKTLAELGREFELGDHLLLGPGELKSGGFR 60

Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAK 168
             SI AD VE++I A+YLD  IE     V  +++ R   ++ G  ++D KT LQE    +
Sbjct: 61  RDSILADCVEAIIGAIYLDSDIEKVRNIVLDWYQSRLETIQPGVNQKDPKTRLQECLQGR 120

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
               P Y VT   G  H+  FTV  E++GL  P  G   S+R 
Sbjct: 121 RLPLPAYTVTKVHGEAHNQEFTVQCEVTGLDKPVVGKGGSRRK 163


>gi|325105464|ref|YP_004275118.1| ribonuclease III [Pedobacter saltans DSM 12145]
 gi|324974312|gb|ADY53296.1| ribonuclease III [Pedobacter saltans DSM 12145]
          Length = 242

 Score =  191 bits (486), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 62/227 (27%), Positives = 102/227 (44%), Gaps = 9/227 (3%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFN 61
              L   IG+   N SL   A  H SI+       + S ERLEFLGD +LG +++ +LF 
Sbjct: 18  VKALRNLIGFVPGNLSLYRMAFRHKSIALGIKKGVKNSNERLEFLGDAVLGAVVAEVLFK 77

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +    EG L+   + +VS    +Q+ ++L     I        ++ S  +S+  D  E+
Sbjct: 78  MYPYKDEGFLTEMRSKIVSRANLNQLGKKLGFNKLIEFDPS-TVNISSKQSSLLGDAFEA 136

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178
           L+ A+YLD G      F+        +          + K+ L EW   +     ++ + 
Sbjct: 137 LVGAVYLDKGYNFTKDFLINRILNPHVDIHTLEVTETNFKSRLIEWCQ-RLSKEIQFNLI 195

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
                D D  FT+ V I G   A G+D +K+ AE++AA +  +  G+
Sbjct: 196 PNQEGDSDKLFTIQVVIDGELMATGVDYNKKNAEKLAAEKTCEMLGV 242


>gi|307069613|ref|YP_003878090.1| ribonuclease III [Candidatus Zinderia insecticola CARI]
 gi|306482873|gb|ADM89744.1| ribonuclease III [Candidatus Zinderia insecticola CARI]
          Length = 221

 Score =  191 bits (486), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 67/217 (30%), Positives = 106/217 (48%), Gaps = 6/217 (2%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            LEK + Y F N+SLL  ALTHSS S+    + E+LEFLGD IL   I+++LFN F +  
Sbjct: 3   KLEKILRYNFNNKSLLFLALTHSSYSNI---NNEKLEFLGDSILNTCITSILFNKFKNES 59

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG LS   + LV  E    ++++++L +F+ + +   K+  +   SI +  +E+L  A+Y
Sbjct: 60  EGFLSKFRSYLVRREKLYNISKKINLYNFLFLGNSEIKNSGNLKISILSSTLEALFGAIY 119

Query: 128 LDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           +D         + K +K            +D KT LQE         P+Y++       +
Sbjct: 120 IDSDFNTINNIIYKLYKFDINNFNIKYNIKDFKTLLQENLQKMKYFLPKYEIYKIYKLKN 179

Query: 186 DPRFTVVV-EISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              F +    +       GM    + AEQ+AA  +LK
Sbjct: 180 FQIFKIKCIFVEKNIITYGMAEKIKVAEQIAARFMLK 216


>gi|149278306|ref|ZP_01884444.1| ribonuclease III [Pedobacter sp. BAL39]
 gi|149231072|gb|EDM36453.1| ribonuclease III [Pedobacter sp. BAL39]
          Length = 242

 Score =  191 bits (485), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 59/227 (25%), Positives = 103/227 (45%), Gaps = 9/227 (3%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLIST 57
           + +    L+  +G+   N  L + A  H S++    +  + S ERLEFLGD ILG +++ 
Sbjct: 14  NKVFIKKLKNILGFVPGNTILYQMAFRHRSVAKVLKNGSRSSNERLEFLGDAILGSVVAE 73

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
           LLF ++   +EG L+   + +V+    +Q+AR++     I               S+  D
Sbjct: 74  LLFKNYPYKEEGFLTEMRSKIVNRANLNQLARKMGFDQLIVFDQKTVNVQTKH-HSMLGD 132

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPE 174
             E+LI A+YLD G      F+ K   +  +          + K++L EW          
Sbjct: 133 AFEALIGAIYLDKGYNFTKDFLLKRIIKPYVDIHTLELTETNFKSKLIEWCQRHGKDVI- 191

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +++   S  D    FT+   I G +   G D +K+ AE++AA +  +
Sbjct: 192 FEMVQNSEGDSPKLFTISAVIDGESVGIGRDYNKKNAEKLAAEKACE 238


>gi|188997575|ref|YP_001931826.1| Ribonuclease III [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932642|gb|ACD67272.1| Ribonuclease III [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 249

 Score =  191 bits (485), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 65/202 (32%), Positives = 103/202 (50%), Gaps = 8/202 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFN 61
           +   LE+ IGY F ++SLL  A+TH S    Y +    YE LEFLGD ++ L+IS +L  
Sbjct: 20  KVKQLEQIIGYTFKDKSLLLAAITHRSFVAEYHKKIPDYEVLEFLGDAVISLIISEILIK 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F  A+EGELS   +++VS    S++AR +    F+ +S   +    +   S+  DV E+
Sbjct: 80  QFPHAREGELSQYRSAIVSEAYLSKLARNIYFQDFVLISKGEKSQKGAERESLLCDVFEA 139

Query: 122 LIAALYLDG--GIEVAGTFVDKYWKQRALKS---GKFRRDAKTELQEWAHAKFGVTPEYK 176
           +  A+Y D    +++     +K +K+  +         RD K+ LQ      +G  P YK
Sbjct: 140 VFGAIYTDCQYNLDIPREIFNKNFKEIVINDIQQENLPRDYKSLLQIETQRLYGKIPTYK 199

Query: 177 VTFRSGPDHDPRFTVVVEISGL 198
           +    GP+HD  FTV   +  +
Sbjct: 200 LISSEGPEHDKTFTVECHVEEI 221


>gi|282901362|ref|ZP_06309287.1| Ribonuclease III [Cylindrospermopsis raciborskii CS-505]
 gi|281193641|gb|EFA68613.1| Ribonuclease III [Cylindrospermopsis raciborskii CS-505]
          Length = 228

 Score =  191 bits (485), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 56/199 (28%), Positives = 89/199 (44%), Gaps = 8/199 (4%)

Query: 17  FANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           F N  L+ +ALTH S ++      +  ERLEFLGD IL  +    L++ +    E EL+ 
Sbjct: 7   FKNEKLVRQALTHRSYANENPTEGDHNERLEFLGDAILNFISGEYLYSRYPQKGEDELTR 66

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD--GG 131
           R ++LV  +  ++ A E+ L   +R+     +D      ++ +   E++I A YLD    
Sbjct: 67  RRSALVEEKQLAKFALEVGLNLKMRLGKGTIQDGGYQNPNLLSSTFEAVIGAYYLDNNCN 126

Query: 132 IEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGV-TPEYKVTFRSGPDHDPR 188
           IE     V+  +    +     ++  D+K   QEW   K     P+YK     G  H P 
Sbjct: 127 IEAVKVAVEPLFDFVSQHTIESRYNVDSKNRFQEWVQKKLCANPPKYKTQQIGGSPHLPE 186

Query: 189 FTVVVEISGLAPAQGMDCS 207
           F   V + G    QG   +
Sbjct: 187 FASRVLVDGKEFGQGKGKN 205


>gi|225159274|ref|ZP_03725574.1| Ribonuclease III [Opitutaceae bacterium TAV2]
 gi|224802127|gb|EEG20399.1| Ribonuclease III [Opitutaceae bacterium TAV2]
          Length = 250

 Score =  191 bits (485), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 59/210 (28%), Positives = 96/210 (45%), Gaps = 6/210 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + L+ RIG+ F   +LLE A+TH S    +    ++ +RLE LGD +L LL++  L+  
Sbjct: 21  LAALQMRIGHKFTTPALLETAITHPSWLQDNPGAPDNNQRLELLGDAVLQLLLTHELYTL 80

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F + +EG LS R   L      +Q+ARE+ L + +R+S+   +       S   D  E+L
Sbjct: 81  FPTDREGPLSKRRAVLSRGGFLAQLAREVGLDTVLRLSASEEQTGGRQRDSALEDAFEAL 140

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAH-AKFGVTPEYKVTF 179
             ALYLD G++     +   +      L++ +   + K  LQE            Y+   
Sbjct: 141 FGALYLDAGLDRTREVLRTLYGPLNVRLETTEDTDNPKGRLQERVQPLHGNQALRYETAH 200

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            SG DH   +   + +       G   SK+
Sbjct: 201 ISGQDHAREYESRLYVLEHQFGTGRGPSKK 230


>gi|87301736|ref|ZP_01084576.1| putative ribonuclease III [Synechococcus sp. WH 5701]
 gi|87283953|gb|EAQ75907.1| putative ribonuclease III [Synechococcus sp. WH 5701]
          Length = 259

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 64/208 (30%), Positives = 107/208 (51%), Gaps = 7/208 (3%)

Query: 19  NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           + + +E+ALTHSS       ++ERLEFLGD +L L  +  L  H  +   G+ S     L
Sbjct: 41  DLAPIEEALTHSSAGRPI--NHERLEFLGDAVLRLAAAEFLERHHRAMDVGQRSALRAQL 98

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG-IEVAGT 137
           VS    +++ +   + + + +      D  +   +I+A++ E+LI  LY   G +E   T
Sbjct: 99  VSDRWLAELGKRCGIEAMVHLGPVAAGDSAA-RQTIRAEICEALIGGLYETTGSLEPVHT 157

Query: 138 FVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVE 194
           ++  +W++  + L +  +R + KT LQEW+ A+    P Y+   RS    DP RF   V+
Sbjct: 158 WLTPHWQRSAKELLADPYRHNWKTGLQEWSQAQGLGLPNYRCEERSRRHGDPRRFHCSVD 217

Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           + G    +G   S+R AEQ AA   L++
Sbjct: 218 LKGQPVGEGWGGSRRDAEQQAARSALEQ 245


>gi|195474532|ref|XP_002089545.1| GE19158 [Drosophila yakuba]
 gi|194175646|gb|EDW89257.1| GE19158 [Drosophila yakuba]
          Length = 1328

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 96/228 (42%), Gaps = 14/228 (6%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
              +  E  IG  F +  LL +A T  S   +H    S +RLEFLGD +L L+ S  L+ H
Sbjct: 974  ELTKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRH 1033

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG LS+  +SLV+  T + V  +L +  +               T  +AD++E+ 
Sbjct: 1034 FPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYAVY----ANPKADLKTKDRADLLEAF 1089

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKF------GVTPE 174
            + ALY+D G+     F       R       +   D K++LQ+               P 
Sbjct: 1090 LGALYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPY 1149

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YKV   SGP +   + V V       A     S + AE  AA + L+ 
Sbjct: 1150 YKVVEASGPTNTRVYKVAVYFRSKRLATSSGSSIQQAEMNAAKQALEN 1197



 Score = 77.8 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 68/156 (43%), Gaps = 8/156 (5%)

Query: 29  HSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVA 88
           H ++S+      ERLEFLGD ++  L S  LF  F   +EG L+    ++V  +  + +A
Sbjct: 823 HETVSNIT--HNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLA 880

Query: 89  RELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL 148
           ++L L  F+  +          +    A+  E+L+ AL LDGGI+VA         ++  
Sbjct: 881 KKLQLEEFMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIKVADEVFTDALFRQDE 940

Query: 149 KSGKFRRD-AKTELQEWAH---AKFGVTPEYKVTFR 180
           K     ++  +  LQE              Y+V   
Sbjct: 941 KLLSIWKNLPEHPLQE--QEPLGDRSCIDSYRVLKE 974


>gi|15291861|gb|AAK93199.1| LD29995p [Drosophila melanogaster]
          Length = 1071

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 96/228 (42%), Gaps = 14/228 (6%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
             +  E  IG  F +  LL +A T  S   +H    S +RLEFLGD +L L+ S  L+ H
Sbjct: 718 ELTKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRH 777

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG LS+  +SLV+  T + V  +L +  +               T  +AD++E+ 
Sbjct: 778 FPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYAVY----ANPKADLKTKDRADLLEAF 833

Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKF------GVTPE 174
           + ALY+D G+     F       R       +   D K++LQ+               P 
Sbjct: 834 LGALYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPY 893

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           YKV   SGP +   + V V       A     S + AE  AA + L+ 
Sbjct: 894 YKVVEASGPTNTRVYKVAVYFRSKRLATSSGSSIQQAEMNAAKQALEN 941



 Score = 95.1 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 82/231 (35%), Gaps = 61/231 (26%)

Query: 9   LEKRIGYAFANRSLLEKALTHSS------------------------------------- 31
           LE+ IGY F NR LL+ ALTH S                                     
Sbjct: 490 LEESIGYRFKNRYLLQLALTHPSYKENYGTNPDHARNSLTNCGIRQPEYGDRKIHYMNTR 549

Query: 32  -------------ISHSYQE-----SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
                            ++        ERLEFLGD ++  L S  LF  F   +EG L+ 
Sbjct: 550 KRGINTLVSIMSRFGKEHETVSNITHNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLAT 609

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
              ++V  +  + +A++L L  F+  +          +    A+  E+L+ AL LDGGI+
Sbjct: 610 YRAAIVQNQHLALLAKKLQLEEFMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIK 669

Query: 134 VAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAH---AKFGVTPEYKVTFR 180
           VA         ++  K     ++  +  LQE              Y+V   
Sbjct: 670 VADEVFTDALFRQDEKLLSIWKNLPEHPLQE--QEPLGDRSCIDSYRVLKE 718


>gi|198414531|ref|XP_002121902.1| PREDICTED: similar to ribonuclease III, nuclear, partial [Ciona
            intestinalis]
          Length = 1224

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 63/229 (27%), Positives = 111/229 (48%), Gaps = 11/229 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E  IG  F +  LL KA T  ++  +       +RLEFLGD +  L+ S  LF  
Sbjct: 962  KLTKFEDSIGVKFNHIRLLAKAFTWRNVHENILTHGHNQRLEFLGDSVCNLVASAYLFKL 1021

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR--VSSDLRKDVCSFMTSIQADVVE 120
            + +  EG L++   ++V+  T S VA EL +  ++   + +D  + V  +     AD++E
Sbjct: 1022 YPTHHEGHLTLLRATVVNGRTQSLVATELGMPEYVICTLDNDSTERVPEWREKNLADLLE 1081

Query: 121  SLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTP 173
            + +AAL++D G++   TF+   +  R  +    +   D K+ LQ+         K    P
Sbjct: 1082 AFVAALFIDKGLKYVKTFMKICFFPRLKEFILTQEWNDPKSCLQQCCLTLRQEGKEPQLP 1141

Query: 174  EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             Y+++ ++GP H  ++ V V   G    +G   S + AE+ AA   L +
Sbjct: 1142 TYEISHQTGPSHSRKYVVTVHFKGEEIGKGTGESIQRAERNAARTALNQ 1190



 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/217 (23%), Positives = 81/217 (37%), Gaps = 63/217 (29%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTH------------------------------SSISHS 35
             TLEK+IGY F  R  L  A+ H                              SSI + 
Sbjct: 732 LRTLEKKIGYEFKERKWLSHAMNHPSCQMNFGLNPDHVRNTLSNCGLRLPRYGDSSIHYK 791

Query: 36  YQ-------------------------ESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
           Y                          E  ERLEFLGD ++G   S  LF  F    EG 
Sbjct: 792 YTRKRGITTLIRIMARLGQQRPVLSPIEHNERLEFLGDAVVGYFTSVHLFLLFPDLSEGA 851

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           L+     LV+ +  + +A  L L  F+  +        + +    A+  E+L+ A+Y++ 
Sbjct: 852 LTTFRTVLVNNQHLALLAERLQLDEFMLYAHGPDLCRKADLRHAMANCFEALMGAIYMEA 911

Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKT----ELQE 163
           G+E A     + + +   ++   +R  ++    +LQE
Sbjct: 912 GLERAQ----RLFGEFLWETEALQRVWRSLPLHQLQE 944


>gi|17137682|ref|NP_477436.1| drosha [Drosophila melanogaster]
 gi|4868118|gb|AAD31170.1| ribonuclease [Drosophila melanogaster]
 gi|7304132|gb|AAF59169.1| drosha [Drosophila melanogaster]
 gi|68051279|gb|AAY84903.1| LD20030p [Drosophila melanogaster]
          Length = 1327

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 96/228 (42%), Gaps = 14/228 (6%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
              +  E  IG  F +  LL +A T  S   +H    S +RLEFLGD +L L+ S  L+ H
Sbjct: 974  ELTKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRH 1033

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG LS+  +SLV+  T + V  +L +  +               T  +AD++E+ 
Sbjct: 1034 FPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYAVY----ANPKADLKTKDRADLLEAF 1089

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKF------GVTPE 174
            + ALY+D G+     F       R       +   D K++LQ+               P 
Sbjct: 1090 LGALYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPY 1149

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YKV   SGP +   + V V       A     S + AE  AA + L+ 
Sbjct: 1150 YKVVEASGPTNTRVYKVAVYFRSKRLATSSGSSIQQAEMNAAKQALEN 1197



 Score = 94.8 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 82/231 (35%), Gaps = 61/231 (26%)

Query: 9   LEKRIGYAFANRSLLEKALTHSS------------------------------------- 31
           LE+ IGY F NR LL+ ALTH S                                     
Sbjct: 746 LEESIGYRFKNRYLLQLALTHPSYKENYGTNPDHARNSLTNCGIRQPEYGDRKIHYMNTR 805

Query: 32  -------------ISHSYQE-----SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
                            ++        ERLEFLGD ++  L S  LF  F   +EG L+ 
Sbjct: 806 KRGINTLVSIMSRFGKEHETVSNITHNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLAT 865

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
              ++V  +  + +A++L L  F+  +          +    A+  E+L+ AL LDGGI+
Sbjct: 866 YRAAIVQNQHLALLAKKLQLEEFMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIK 925

Query: 134 VAGTFVDKYWKQRALKSGKFRRD-AKTELQEWAH---AKFGVTPEYKVTFR 180
           VA         ++  K     ++  +  LQE              Y+V   
Sbjct: 926 VADEVFTDALFRQDEKLLSIWKNLPEHPLQE--QEPLGDRSCIDSYRVLKE 974


>gi|237755458|ref|ZP_04584082.1| ribonuclease III [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237692390|gb|EEP61374.1| ribonuclease III [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 247

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 65/202 (32%), Positives = 104/202 (51%), Gaps = 8/202 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFN 61
           +   LE+ IGY F ++SLL  A+TH S    Y +    YE LEFLGD ++ L+IS +L  
Sbjct: 15  KIKQLEEIIGYTFKDKSLLLAAITHRSFVAEYHKKIQDYEVLEFLGDAVISLIISEILIK 74

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F  A+EGELS   +++VS    S++AR ++   F+ +S   +    +   S+  DV E+
Sbjct: 75  QFPYAREGELSQYRSAIVSEAYLSKLARNVNFQDFVLISKGEKYQKGAERESLLCDVFEA 134

Query: 122 LIAALYLDG--GIEVAGTFVDKYWKQRALKS---GKFRRDAKTELQEWAHAKFGVTPEYK 176
           +  A+Y D    +++     +K +K+  +         RD K+ LQ      +G  P YK
Sbjct: 135 VFGAIYTDCQYNLDIPREIFNKNFKEIVINDIQQENLPRDYKSLLQIETQRLYGKIPTYK 194

Query: 177 VTFRSGPDHDPRFTVVVEISGL 198
           +    GP+HD  FTV   +  +
Sbjct: 195 LISSEGPEHDKTFTVECHVEEI 216


>gi|163955118|ref|YP_001648222.1| hypothetical protein OsV5_145f [Ostreococcus virus OsV5]
 gi|163638567|gb|ABY27926.1| hypothetical protein OsV5_145f [Ostreococcus virus OsV5]
          Length = 241

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 63/225 (28%), Positives = 107/225 (47%), Gaps = 13/225 (5%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLIST 57
           M+      +E+ +G    + S  ++A TH S    Y++   S+E LEF+GD +LG +I+ 
Sbjct: 1   MN-FNQQDIEQLVGTKIRDLSFYQRAFTHKSALKEYEQFNVSFETLEFMGDSVLGFIITK 59

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF+ ++  +EG L+     LV +ET + +A +L L   + +     ++  +    I  D
Sbjct: 60  FLFDRYEERQEGFLTKARTKLVRSETLAAIALKLGLNKLVLMDEKGTRNGWNNNPKILED 119

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYW-KQRALKSGKFRRD--AKTELQEWAHAKFGVTPE 174
           V E+L+ A+Y+D G+  A  FV + +   + +       D   K +L           PE
Sbjct: 120 VFEALVGAIYMDLGLLHAKQFVLRIYNDPKYIDLNSIMVDDNFKDKLMRHCQVNNLPLPE 179

Query: 175 YKVTFRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           Y+V       H +  F V   I+G    +G   SK+ AEQ+AA  
Sbjct: 180 YEVVS-----HWEGNFYVDALINGRFCGRGQAKSKKQAEQLAAKA 219


>gi|110637800|ref|YP_678007.1| ribonuclease III [Cytophaga hutchinsonii ATCC 33406]
 gi|110280481|gb|ABG58667.1| RNAse III [Cytophaga hutchinsonii ATCC 33406]
          Length = 247

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 68/222 (30%), Positives = 106/222 (47%), Gaps = 15/222 (6%)

Query: 9   LEKRIGYA----FANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLF 60
           L ++I Y       N  L + A+ H+S +       +ESYERLE+LGD ILG +++  LF
Sbjct: 23  LAQKIRYVTGMWPGNLHLYQMAIVHTSAADENESGVKESYERLEYLGDSILGAVVAEYLF 82

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG L+   + +V+ E  +QV ++L L+  +  +    K       S+  DVVE
Sbjct: 83  KRFPFKDEGFLTEIRSRIVNREILNQVGKDLGLSDIVVFNGSKGKQG---HKSLYGDVVE 139

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKV 177
           +++ A+YLD G E A  FV K      +         ++ K+ L EW   +     E+ +
Sbjct: 140 AIVGAVYLDKGFENAKKFVLKKIVSSQIDVDAIIQNNKNFKSILLEWCQKENKKL-EFVI 198

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
              SG  H   F   V ++  +  QG+  SK+ AEQ AA   
Sbjct: 199 IEESGHRHQKVFKAEVRVADESKGQGIGFSKKKAEQNAAEIA 240


>gi|313886831|ref|ZP_07820536.1| ribonuclease III [Porphyromonas asaccharolytica PR426713P-I]
 gi|312923721|gb|EFR34525.1| ribonuclease III [Porphyromonas asaccharolytica PR426713P-I]
          Length = 259

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 14/225 (6%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLF 60
             +TL  RIG       L   A+ H S S       + + ERLEFLGD +L   I T L+
Sbjct: 27  NLTTLFDRIGILPVRTDLYLLAMRHRSCSIVGEGGEKLNNERLEFLGDAVLEASICTYLY 86

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
               +  EGELS   +SLVS    ++V R L L  +I +      +       I  + VE
Sbjct: 87  QLHPTWDEGELSKCKSSLVSRPVNNEVGRRLHLERYIIMVPSALDNSVD----IYGNTVE 142

Query: 121 SLIAALYLDGGI----EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           +LI A+YLD G     E    F+   ++     +    ++ K+EL EW         E++
Sbjct: 143 ALIGAIYLDQGYARTQEFVRDFILPTYRDMQAHTVASIQNYKSELIEWVQKHHLSH-EFR 201

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +       HD  F   V I G    +G   SK+ A+Q AA + LK
Sbjct: 202 LEEHEMAPHD-HFIYSVWIDGKPVGRGAGSSKKRAQQEAARDTLK 245


>gi|290343597|ref|YP_003494964.1| hypothetical protein OTV1_125 [Ostreococcus tauri virus 1]
 gi|260161012|emb|CAY39713.1| hypothetical protein OTV1_125 [Ostreococcus tauri virus 1]
          Length = 240

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 63/225 (28%), Positives = 107/225 (47%), Gaps = 13/225 (5%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLIST 57
           M+      +E+ +G    + S  ++A TH S    Y++   S+E LEF+GD +LG +I+ 
Sbjct: 1   MN-FNQQDIEQLVGTKIRDLSFYQRAFTHKSALKEYEQFNVSFETLEFMGDSVLGFIITK 59

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF+ ++  +EG L+     LV +ET + +A +L L   + +     ++  +    I  D
Sbjct: 60  FLFDRYEERQEGFLTKARTKLVRSETLAAIALKLGLNKLVLMDEKGTRNGWNNNPKILED 119

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYW-KQRALKSGKFRRD--AKTELQEWAHAKFGVTPE 174
           V E+L+ A+Y+D G+  A  FV + +   + +       D   K +L           PE
Sbjct: 120 VFEALVGAIYMDLGLLHAKQFVLRIYNDPKYIDLNSIMVDDNFKDKLMRHCQVNNLPLPE 179

Query: 175 YKVTFRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           Y+V       H +  F V   I+G    +G   SK+ AEQ+AA  
Sbjct: 180 YEVVS-----HWEGNFYVDALINGRFCGRGQAKSKKQAEQLAAKA 219


>gi|298245671|ref|ZP_06969477.1| ribonuclease III [Ktedonobacter racemifer DSM 44963]
 gi|297553152|gb|EFH87017.1| ribonuclease III [Ktedonobacter racemifer DSM 44963]
          Length = 251

 Score =  190 bits (483), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 113/223 (50%), Gaps = 4/223 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNH 62
               LE  +   F +RSLL +A+TH S       ++SY+ LEFLGD I+   +   ++  
Sbjct: 9   NLLALEALLQVTFHDRSLLLRAITHHSCCTETALRDSYDTLEFLGDAIISAHVVEYIYRS 68

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS-SDLRKDVCSFMTSIQADVVES 121
           F +A EG+++   + +VS    + + ++L L  FIRV  ++LR        S+ ADV+E+
Sbjct: 69  FPNASEGDMTALKSEVVSRRVFALIGQQLGLFPFIRVDIANLRTFNERSRDSLCADVLEA 128

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           L+ A+++D G EVA  FV +       + S +   + K  LQ+    + G  P Y+V  +
Sbjct: 129 LVGAIHIDQGSEVARDFVARAILPMVEQISVQADTNPKGRLQKIILQRTGSLPRYRVLEQ 188

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           SG ++D  F V V         G   S + A ++AA E L+  
Sbjct: 189 SGRNNDRIFLVGVYDQETLLGLGKASSIKEAGRLAAREALEAL 231


>gi|195332283|ref|XP_002032828.1| GM20991 [Drosophila sechellia]
 gi|194124798|gb|EDW46841.1| GM20991 [Drosophila sechellia]
          Length = 1310

 Score =  190 bits (483), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 96/228 (42%), Gaps = 14/228 (6%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
              +  E  IG  F +  LL +A T  S   +H    S +RLEFLGD +L L+ S  L+ H
Sbjct: 958  ELTKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRH 1017

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG LS+  +SLV+  T + V  +L +  F               T  +AD++E+ 
Sbjct: 1018 FPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKFAVY----ANPKADLKTKDRADLLEAF 1073

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKF------GVTPE 174
            + ALY+D G+     F       R       +   D K++LQ+               P 
Sbjct: 1074 LGALYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPY 1133

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YKV   SGP +   + V V       A     S + AE  AA + L+ 
Sbjct: 1134 YKVVEASGPTNTRVYKVAVYFRSKRLATSSGSSIQQAEMNAAKQALEN 1181



 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 6/146 (4%)

Query: 39  SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
             ERLEFLGD ++  L S  LF  F   +EG L+    ++V  +  + +A++L L  F+ 
Sbjct: 815 HNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEEFML 874

Query: 99  VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-A 157
            +          +    A+  E+L+ AL LDGGI+VA         ++  K     ++  
Sbjct: 875 YAHGSDLCHELELRHAMANCFEALMGALLLDGGIKVADEVFTDALFRQDEKLLSIWKNLP 934

Query: 158 KTELQEWAH---AKFGVTPEYKVTFR 180
           +  LQE              Y+V   
Sbjct: 935 EHPLQE--QEPLGDRSCIDSYRVLKE 958


>gi|194863666|ref|XP_001970553.1| GG23313 [Drosophila erecta]
 gi|190662420|gb|EDV59612.1| GG23313 [Drosophila erecta]
          Length = 1329

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 96/228 (42%), Gaps = 14/228 (6%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
              +  E  IG  F +  LL +A T  S   +H    S +RLEFLGD +L L+ S  L+ H
Sbjct: 973  ELTKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRH 1032

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG LS+  +SLV+  T + V  +L +  +               T  +AD++E+ 
Sbjct: 1033 FPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYAVY----ANPKADLKTKDRADLLEAF 1088

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKF------GVTPE 174
            + ALY+D G+     F       R       +   D K++LQ+               P 
Sbjct: 1089 LGALYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPY 1148

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YKV   SGP +   + V V       A     S + AE  AA + L+ 
Sbjct: 1149 YKVVEASGPTNTRVYKVAVYFRSKRLATSSGSSIQQAEMNAAKQALEN 1196



 Score = 77.4 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 68/156 (43%), Gaps = 8/156 (5%)

Query: 29  HSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVA 88
           H ++S+      ERLEFLGD ++  L S  LF  F   +EG L+    ++V  +  + +A
Sbjct: 822 HETVSNIT--HNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLA 879

Query: 89  RELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL 148
           ++L L  F+  +          +    A+  E+L+ AL LDGGI+VA         ++  
Sbjct: 880 KKLQLEEFMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIKVADEVFTDALFRQDE 939

Query: 149 KSGKFRRD-AKTELQEWAH---AKFGVTPEYKVTFR 180
           K     ++  +  LQE              Y+V   
Sbjct: 940 KLLSIWKNLPEHPLQE--QEPLGDRSCIDSYRVLKE 973


>gi|312890952|ref|ZP_07750480.1| ribonuclease III [Mucilaginibacter paludis DSM 18603]
 gi|311296568|gb|EFQ73709.1| ribonuclease III [Mucilaginibacter paludis DSM 18603]
          Length = 241

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 60/227 (26%), Positives = 105/227 (46%), Gaps = 10/227 (4%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
              L+  +G+   N SL   A  H S++ + ++    S ERLEFLGD ILG +++ +LF 
Sbjct: 18  VKALKNLLGFVPGNLSLYRLAFRHKSVAQNVKKGVKNSNERLEFLGDAILGCVVAEVLFK 77

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +    EG L+   + +VS    +Q+AR+L     I   S  R    +   S+  D  E+
Sbjct: 78  LYPYEDEGFLTELRSKIVSRVNLNQLARKLGFEQLIEYDS--RMVGSTRQGSLLGDAFEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVT 178
           L+ A+YLD G +    F+  +  +  +   K  +   + K++L EW   +      + + 
Sbjct: 136 LVGAVYLDKGYDFTKNFLVNHIIKSHIDIHKLEQTESNFKSKLIEWCQ-RHSKDVSFDLV 194

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
                +    FT+   I G     G + +K+ AE++AA +  +   I
Sbjct: 195 ENKEGESPKLFTIQASIDGEVLGVGKEFNKKNAEKLAAEKACEALSI 241


>gi|304382096|ref|ZP_07364607.1| ribonuclease 3 [Prevotella marshii DSM 16973]
 gi|304336694|gb|EFM02919.1| ribonuclease 3 [Prevotella marshii DSM 16973]
          Length = 359

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 57/226 (25%), Positives = 111/226 (49%), Gaps = 13/226 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           +  L + IG+     S  ++AL H S++    +    + ERLEFLGD IL  ++  +++ 
Sbjct: 20  FLALRRIIGFYPHEISYYQQALMHKSVARRNAKGKPVNNERLEFLGDAILDAIVGDIVYQ 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF   +EG L+   + LV  ET +++A+E+ + + I +SS       S  + +  +  E+
Sbjct: 80  HFPGKREGFLTNTRSKLVQRETLNRLAKEMGINNLI-LSSG---RTSSHNSYMGGNAFEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178
           L+ A+YLD G      F++     + +   K      + K++L EW+     +  ++++ 
Sbjct: 136 LVGAIYLDKGYNACMKFMNHRILGQIINLDKMAYKEVNFKSKLIEWSQKN-RIRLDFELV 194

Query: 179 FRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +      +P FT  V +  +    G   SK+ ++Q A+ + LK+ 
Sbjct: 195 EQKKDESGNPVFTCKVVLEDVEGCCGTGFSKKESQQTASEKTLKKL 240


>gi|261337990|ref|ZP_05965874.1| ribonuclease III [Bifidobacterium gallicum DSM 20093]
 gi|270277492|gb|EFA23346.1| ribonuclease III [Bifidobacterium gallicum DSM 20093]
          Length = 247

 Score =  189 bits (481), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 72/218 (33%), Positives = 98/218 (44%), Gaps = 9/218 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           L + +G       LL +ALTH S SH      +YERLEFLGD +L L+ +  LF      
Sbjct: 23  LLEALGTTLT-PDLLVEALTHRSFSHENPGTRNYERLEFLGDAVLELVATESLFTDHPDL 81

Query: 67  KEGELSVRFNSLVSAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
            EGEL+      VS E  S+VARE L +  +I + +       +   SI  D+VESLI A
Sbjct: 82  SEGELAKMRAKAVSEEELSRVAREKLHVGPYILLGNGEAAQGGADKDSILCDIVESLIGA 141

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            +++ GIE A   V         +        D KT L   AH      P +++    GP
Sbjct: 142 TFVEHGIEGARPVVHHLIDDVLAEMMTEGPALDWKTSLVIKAHELGMDEPHFRM-AVGGP 200

Query: 184 DHDPRFTVVVEI--SGLAPAQGMDCSKRAAEQVAAAEV 219
           ++ P +   V I         G   SKR A+  AA E 
Sbjct: 201 EYAPEYHAQVLIGDDDRVWGTGDGSSKRKAQLAAAHEA 238


>gi|67923480|ref|ZP_00516956.1| Ribonuclease III [Crocosphaera watsonii WH 8501]
 gi|67854668|gb|EAM49951.1| Ribonuclease III [Crocosphaera watsonii WH 8501]
          Length = 238

 Score =  189 bits (480), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 102/205 (49%), Gaps = 7/205 (3%)

Query: 19  NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           +  LL+ ALTH +IS     +Y++LEF+GD ++ L+ + +L   + +   GE +   + L
Sbjct: 28  DLKLLDLALTHPTISKEN--NYQQLEFVGDSVVRLVSAEILLETYPNELVGEFAAIRSIL 85

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIEVAGT 137
           VS  T ++ A    L  ++ +   + +D      S  AD  E+++ ALYL    + +   
Sbjct: 86  VSDRTLAEFADNYGLDRYLLMIDSVAQDKI-GRVSWLADTFEAVLGALYLSTQNMTLIRP 144

Query: 138 FVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVE 194
           ++D    Q+A  ++S   R++ K  LQEW   ++ + P+Y+V  +     H  RF   V 
Sbjct: 145 WLDPLLLQKAAEIRSDPARQNYKDALQEWTQGQYKILPDYRVAEQHQNRGHHQRFFAEVW 204

Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEV 219
           +       G   SK+ AEQ AA + 
Sbjct: 205 LKDRQLGSGYGRSKKMAEQAAAKDA 229


>gi|284045141|ref|YP_003395481.1| ribonuclease III [Conexibacter woesei DSM 14684]
 gi|283949362|gb|ADB52106.1| ribonuclease III [Conexibacter woesei DSM 14684]
          Length = 223

 Score =  189 bits (480), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 68/207 (32%), Positives = 96/207 (46%), Gaps = 7/207 (3%)

Query: 24  EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF--DSAKEGELSVRFNSLVSA 81
            +  THSS +    +SYERL FLGD +LGL ++T L+     D    G L+      VS 
Sbjct: 17  RQVFTHSSWTDRRADSYERLAFLGDSVLGLAVTTHLYPRLEADRYGAGRLTKIRAQAVSG 76

Query: 82  ETCSQVARELDLASFIRV----SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137
            +C +VA  L +   +R           D       + A V+E++I A+YLD G E    
Sbjct: 77  RSCMEVAERLGVPERLRAAAPQGVGQNADALVRTERVLASVIEAVIGAVYLDNGYETTAE 136

Query: 138 FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197
            V + ++     + +   D K+ LQE   A+ G    Y V    GP HD  F VV E++G
Sbjct: 137 AVVEAFEPEIETALEHPVDFKSALQERL-ARRGDVVAYSVASEEGPPHDRVFEVVAEVAG 195

Query: 198 LAPAQGMDCSKRAAEQVAAAEVLKREG 224
                G   SK+ AEQ AA   L+  G
Sbjct: 196 NQVGSGRGRSKKDAEQEAARTALEAMG 222


>gi|289178059|gb|ADC85305.1| Ribonuclease III [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 270

 Score =  189 bits (480), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 98/206 (47%), Gaps = 8/206 (3%)

Query: 21  SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            LL +ALTH S SH ++  ++YERLEFLGD +L  +++  LF  +    EG+L+      
Sbjct: 41  DLLVEALTHRSFSHEHEGVKNYERLEFLGDAVLEFVVTETLFKQYPDKSEGQLAKIRAKA 100

Query: 79  VSAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137
           VS E+ S +AR+ L +  +I +     +   +  +SI  D+VESLI A ++  G++ A  
Sbjct: 101 VSEESLSAIARDRLHVGPYILLGHGESEQGGAEKSSILCDIVESLIGATFVQYGVDKARE 160

Query: 138 FVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
            V          + +     D KT L   AH      P Y++    GP++   FT    +
Sbjct: 161 VVHHLVDDTLAEVATEGPALDWKTSLTVKAHEMGLPEPRYQM-SVGGPEYALEFTAFAML 219

Query: 196 SG--LAPAQGMDCSKRAAEQVAAAEV 219
                    G   SKR A+  AA + 
Sbjct: 220 GDSKEVLGVGNGSSKRKAQLAAAEQA 245


>gi|284992411|ref|YP_003410965.1| ribonuclease III [Geodermatophilus obscurus DSM 43160]
 gi|284065656|gb|ADB76594.1| ribonuclease III [Geodermatophilus obscurus DSM 43160]
          Length = 270

 Score =  189 bits (480), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 54/189 (28%), Positives = 87/189 (46%), Gaps = 8/189 (4%)

Query: 28  THSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85
           TH S ++ +    + ERLEFLGD +LGL+++  L+       EG L+    S+V+  + +
Sbjct: 51  THRSYAYEHGGLPTNERLEFLGDSVLGLVVTDELYQRHPDLPEGRLAKLRASVVNMTSLA 110

Query: 86  QVARE---LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
            VAR      L   + +             SI AD VE++I A+++  G++ A   V + 
Sbjct: 111 GVARRLGDGGLGPHLLLGRGEETTGGRDKDSILADAVEAIIGAVHVGLGLDTAAAIVHRL 170

Query: 143 WKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
           +     ++       D KT LQE         P Y V   +GPDH   FT  V ++G   
Sbjct: 171 FDPLLDQAATRGAGLDWKTSLQELGARLGLGAPTY-VVEDTGPDHAKTFTAAVVLAGTVY 229

Query: 201 AQGMDCSKR 209
            +G   +K+
Sbjct: 230 GRGAGRTKK 238


>gi|325123052|gb|ADY82575.1| ribonuclease III, ds RNA [Acinetobacter calcoaceticus PHEA-2]
          Length = 176

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 53/172 (30%), Positives = 86/172 (50%), Gaps = 3/172 (1%)

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
           ++I+  L++ + +  EG L+    +LV  E   ++A +L L+  + +S+   K       
Sbjct: 1   MIIANYLYHAYPNENEGRLTRMRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRE 60

Query: 113 SIQADVVESLIAALYLDGG-IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKF 169
           SI AD VE++I A+YLD G + +    V K++      ++     +D K+ LQE+  A+ 
Sbjct: 61  SILADTVEAIIGAIYLDSGDLNLLKDIVLKWYIPYLDHIEPTDQLKDPKSRLQEYLQARK 120

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              P Y+V    G      F V   + GL    G   S+R AEQ AAAE+LK
Sbjct: 121 KPLPVYEVVDIQGDAPHQHFKVECVVDGLPKIYGEGSSRRFAEQAAAAEILK 172


>gi|39939094|ref|NP_950860.1| dsRNA-specific ribonuclease [Onion yellows phytoplasma OY-M]
 gi|81402281|sp|Q6YPW7|RNC_ONYPE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|39722203|dbj|BAD04693.1| dsRNA-specific ribonuclease [Onion yellows phytoplasma OY-M]
          Length = 238

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 93/206 (45%), Gaps = 7/206 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFN 61
              TL + +     N +L ++ALTHSS S+     QE  ERLEFLGD I+GLL++  L++
Sbjct: 3   NIQTLFQTLNITPQNLTLYKQALTHSSYSNEQNPPQEDNERLEFLGDAIVGLLMADYLYS 62

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
                 EG ++ +    V   + +  A  ++L +++ +     K+      SI AD  E+
Sbjct: 63  Q-SKEDEGIMTKKRAQAVCERSLTIYAHNIELQNYLLLGKGE-KNKDFNAKSIIADTFEA 120

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           L  A+YLD G   A            L    +  D KT+LQE   ++   T +YK+    
Sbjct: 121 LFGAIYLDLGYLTAKKVFHNIVLPH-LAKTIYIIDFKTQLQEIVQSEKK-TIQYKIVQEQ 178

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCS 207
           GP H   F   V +       G   +
Sbjct: 179 GPAHSKNFVAEVYLEKNLLGTGEGST 204


>gi|195455348|ref|XP_002074681.1| GK23200 [Drosophila willistoni]
 gi|194170766|gb|EDW85667.1| GK23200 [Drosophila willistoni]
          Length = 1320

 Score =  188 bits (479), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 96/228 (42%), Gaps = 14/228 (6%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
              +  E  +G  F +  LL +A T  S   +H    S +RLEFLGD +L L+ S  L+ H
Sbjct: 960  ELTKFEDSVGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLYRH 1019

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG LS+  +SLV+  T + V  +L +  +               T  +AD++E+ 
Sbjct: 1020 FPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYAVY----ANPKADLKTKDRADLLEAF 1075

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKF------GVTPE 174
            + +LY+D G+     F       R       +   D K++LQ+               P 
Sbjct: 1076 LGSLYVDKGLLYCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPY 1135

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YKV   SGP +   + V V       A     S + AE  AA + L+ 
Sbjct: 1136 YKVVEASGPTNTRVYKVAVYFRSKRLATSSGSSIQQAEMNAAKQALEN 1183



 Score = 79.0 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 68/156 (43%), Gaps = 8/156 (5%)

Query: 29  HSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVA 88
           H ++S+      ERLEFLGD ++  L S  LF  F   +EG L+    ++V  +  + +A
Sbjct: 809 HETVSNIT--HNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLA 866

Query: 89  RELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL 148
           ++L L  F+  +          +    A+  E+L+ AL LDGGI+VA         ++  
Sbjct: 867 KKLQLEEFMLYAHGSDLCHELELRHAMANCFEALMGALLLDGGIKVADEVFTDALFRQEE 926

Query: 149 KSGKFRRD-AKTELQEWAH---AKFGVTPEYKVTFR 180
           K     ++  +  LQE              Y+V   
Sbjct: 927 KLLNIWKNLPEHPLQE--QEPLGDRSCIDSYRVLKE 960


>gi|255534075|ref|YP_003094447.1| ribonuclease III [Pedobacter heparinus DSM 2366]
 gi|255347059|gb|ACU06385.1| ribonuclease III [Pedobacter heparinus DSM 2366]
          Length = 242

 Score =  188 bits (479), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 58/231 (25%), Positives = 103/231 (44%), Gaps = 9/231 (3%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLIST 57
             +    L+  +G+   N +L + A  H S++    +  + S ERLEFLGD +LG +I+ 
Sbjct: 14  DKVFIRKLKNILGFVPGNATLYKMAFRHRSVAKILKNGSRSSNERLEFLGDAVLGSVIAE 73

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
           LLF  +   +EG L+   + +V+    +Q+AR++     I               S+  D
Sbjct: 74  LLFKSYPYKEEGFLTEMRSKIVNRANLNQLARKMGFDQLIVFDQKAVNVQTKH-HSMLGD 132

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPE 174
             E+LI A+YLD G      F+ K   +  +          + K++L EW   + G    
Sbjct: 133 AFEALIGAVYLDKGYNFTREFLLKRIVKPYIDIHTLELTETNFKSKLIEWCQ-RHGKDIT 191

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           + +      +    FT+   + G +   G D +K+ AE++AA +  +   I
Sbjct: 192 FDMMENEEGESAKLFTIQAVVEGESYGIGRDYNKKNAEKLAAEKACEALSI 242


>gi|284928941|ref|YP_003421463.1| RNAse III [cyanobacterium UCYN-A]
 gi|284809400|gb|ADB95105.1| RNAse III [cyanobacterium UCYN-A]
          Length = 243

 Score =  188 bits (479), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 107/205 (52%), Gaps = 7/205 (3%)

Query: 19  NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           +  +L  ALTH + S   +++Y++LEF+GD ++ L+ + +L  ++ +   GE +   + L
Sbjct: 28  DWEILNLALTHPTFSQ--KDNYQQLEFVGDSVIRLVAAEILLENYPNELVGEFAAIRSIL 85

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIEVAGT 137
           VS  T ++ A    L  ++ ++  + KD      S  AD  E+L+ ALYL+   + +   
Sbjct: 86  VSDNTLAEFAEVYGLERYLLMAESVAKDKI-GRVSWLADTFEALLGALYLNRQNMSLIRP 144

Query: 138 FVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG-PDHDPRFTVVVE 194
           ++D     +A  +++   R++ K  LQEW+ +++ + P+Y+V    G  +H  RF   V 
Sbjct: 145 WLDPLLITKAAEIRADPARQNYKDALQEWSQSQYKLLPKYQVVQHQGSENHHQRFFAEVW 204

Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEV 219
           +       G  CSK+ AEQ AA   
Sbjct: 205 VKNNNLGSGYGCSKKVAEQAAAKNA 229


>gi|124004144|ref|ZP_01688990.1| ribonuclease III [Microscilla marina ATCC 23134]
 gi|123990214|gb|EAY29713.1| ribonuclease III [Microscilla marina ATCC 23134]
          Length = 248

 Score =  188 bits (479), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 64/221 (28%), Positives = 111/221 (50%), Gaps = 10/221 (4%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTLLFNHF 63
            +++ IG+   N +L + AL+H+S S S    ++ES ERLE+LGD ILG +++  LF  +
Sbjct: 23  AIKQIIGHKPFNLALYQLALSHTSASKSLQDGFKESNERLEYLGDAILGAIVADYLFKKY 82

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
              +EG L+     +V+ E+ +Q++R++ +   IR      K   ++  S+  D +E+L+
Sbjct: 83  PFKEEGFLTEIRARIVNRESLNQLSRKMGIQDLIRY-EGNPKSNFTYK-SMGGDALEALV 140

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVTFR 180
            A+YLD G      FV +      L         ++ K+ + EWA        ++++   
Sbjct: 141 GAVYLDKGFHYCRKFVVRKIVLGHLDLDDIIENNQNYKSIIIEWAQKNNRDL-KFEIVRE 199

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            G  H  +F   V I     A+G   SK+ AEQ AA +  +
Sbjct: 200 EGSKHQRQFIAQVIIDDEPVAKGSGFSKKKAEQAAAEKTCR 240


>gi|224025527|ref|ZP_03643893.1| hypothetical protein BACCOPRO_02267 [Bacteroides coprophilus DSM
           18228]
 gi|224018763|gb|EEF76761.1| hypothetical protein BACCOPRO_02267 [Bacteroides coprophilus DSM
           18228]
          Length = 308

 Score =  188 bits (478), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 62/228 (27%), Positives = 115/228 (50%), Gaps = 12/228 (5%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTL 58
               Y    + +G+   N  + ++AL H S S   +    + ERLEFLGD IL  +++ +
Sbjct: 16  DKEPYLCFYRMLGFYPRNIEIYQQALLHKSSSVKEKGRLLNNERLEFLGDAILDAVVADI 75

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           ++  F+  +EG L+   + +V  ET +QVA ++ L   I+ ++       S  + +  + 
Sbjct: 76  VYKKFEGKREGFLTNTRSKIVQRETLNQVAVQIGLDKLIKFTT----RQSSHNSYMSGNA 131

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEY 175
            E+L+ A+YLD G +    F+++    + L   K  R   + K++L EW+        E+
Sbjct: 132 FEALVGAIYLDRGYDACKKFMEERIIAQYLNIDKISRKEVNFKSKLIEWSQKN-KFEVEF 190

Query: 176 KVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           ++T +S   D +P F   V +  +   +G   SK+ ++Q+AA E LK+
Sbjct: 191 RLTGQSIDSDSNPIFETQVMVENIPAGEGKGYSKKESQQLAAQETLKQ 238


>gi|317968415|ref|ZP_07969805.1| putative ribonuclease III [Synechococcus sp. CB0205]
          Length = 236

 Score =  188 bits (478), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 64/233 (27%), Positives = 111/233 (47%), Gaps = 13/233 (5%)

Query: 1   MSALRYSTLEK---RIGYAFA---NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLL 54
           M+A R++ L +    +G       +   L++ALTH+S       ++E+LEFLGD +L L 
Sbjct: 1   MNAERHAQLLQFLQALGLTTPAEMDLKRLDEALTHTSAG--LSVNHEKLEFLGDAVLRLA 58

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
            S  L  H+ +   G+ S     LVS     ++ R + + + +R+      D  +   ++
Sbjct: 59  ASEFLEQHYPNLSVGQSSALRAQLVSDRWLGELGRAVGIDAVLRIGPTAAGDTSA-RETL 117

Query: 115 QADVVESLIAALY-LDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGV 171
           +A+  E+ I ALY L G +     ++  +W+   RA ++     + K+ LQEW+  +   
Sbjct: 118 RAEACEACIGALYRLWGDLTPVLLWLTPHWQATARAFEADPHLHNWKSALQEWSQGQKRG 177

Query: 172 TPEYKVTFRSGPDHDP-RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            P+Y+    S    DP RF   V +      +G   S+R AEQ AA   L++ 
Sbjct: 178 LPDYRCEEVSQVHADPRRFHCQVSLGKTTLGEGWGRSRRQAEQEAARVSLEKL 230


>gi|188593372|emb|CAP07635.1| drosha protein [Oikopleura dioica]
          Length = 1096

 Score =  188 bits (478), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 105/227 (46%), Gaps = 11/227 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           R + LE+ +G  F N  LL KALT  +   +   +   +RLEFLGD I   L +  LF H
Sbjct: 768 RCAELEELLGVKFKNIRLLAKALTLKNVKYNDITKGHNQRLEFLGDAICNFLAAEYLFKH 827

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L++   ++V A T + VA+++ L  F+     L  D   +   I AD++ES 
Sbjct: 828 FPLHHEGHLTLLRCTMVGAPTQALVAQQIGLDKFVISRQSLSHDKMGWKQKILADLMESF 887

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGV-----TPEY 175
           I AL++D GI     F+   +  R       +   D K+ LQ+              PEY
Sbjct: 888 IGALFIDRGIIAVDVFMKVAFYPRLKHFIMSQVWNDPKSCLQQCCLTLRPEEGTPDLPEY 947

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           + T  +      R+ V V   G    +G   S + AE+ AA + L++
Sbjct: 948 RTT--TSNSSKMRYRVEVFFRGERIGEGHGPSIQLAEKFAARKALEK 992



 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 77/201 (38%), Gaps = 56/201 (27%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESY---------------------- 40
              +L+  +GY F N S + +A+TH S   ++     +                      
Sbjct: 537 SLESLQTILGYQFKNLSWITRAMTHPSAVYNYGENPDHVRNSTTNCGIRKPIYGEEGPSR 596

Query: 41  -------------------------------ERLEFLGDRILGLLISTLLFNHFDSAKEG 69
                                          ER EFLGD +LG ++S  +F+ F +  EG
Sbjct: 597 PYERKRGIVTLIKVMALLGTSEPKESPINYLERPEFLGDAVLGFVVSVSIFHLFPNLGEG 656

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
            LS+   +LV     + +A++L L  +              + +  A+  E+++ A+Y+D
Sbjct: 657 ALSMLRCALVCNVHLAALAQKLTLEDYFVYIHSQDLAKREDLNNALANCFEAVLGAIYMD 716

Query: 130 GGIEVAGTFVDK-YWKQRALK 149
           GG+E     + +  +  +AL+
Sbjct: 717 GGLEPVRQLLARVLFDDKALQ 737


>gi|183601845|ref|ZP_02963214.1| ribonuclease III [Bifidobacterium animalis subsp. lactis HN019]
 gi|219682760|ref|YP_002469143.1| ribonuclease III [Bifidobacterium animalis subsp. lactis AD011]
 gi|241190336|ref|YP_002967730.1| ribonuclease III [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241195742|ref|YP_002969297.1| ribonuclease III [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|183218730|gb|EDT89372.1| ribonuclease III [Bifidobacterium animalis subsp. lactis HN019]
 gi|219620410|gb|ACL28567.1| ribonuclease III [Bifidobacterium animalis subsp. lactis AD011]
 gi|240248728|gb|ACS45668.1| ribonuclease III [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240250296|gb|ACS47235.1| ribonuclease III [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|295793323|gb|ADG32858.1| ribonuclease III [Bifidobacterium animalis subsp. lactis V9]
          Length = 258

 Score =  188 bits (478), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 98/206 (47%), Gaps = 8/206 (3%)

Query: 21  SLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            LL +ALTH S SH ++  ++YERLEFLGD +L  +++  LF  +    EG+L+      
Sbjct: 29  DLLVEALTHRSFSHEHEGVKNYERLEFLGDAVLEFVVTETLFKQYPDKSEGQLAKIRAKA 88

Query: 79  VSAETCSQVARE-LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137
           VS E+ S +AR+ L +  +I +     +   +  +SI  D+VESLI A ++  G++ A  
Sbjct: 89  VSEESLSAIARDRLHVGPYILLGHGESEQGGAEKSSILCDIVESLIGATFVQYGVDKARE 148

Query: 138 FVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
            V          + +     D KT L   AH      P Y++    GP++   FT    +
Sbjct: 149 VVHHLVDDTLAEVATEGPALDWKTSLTVKAHEMGLPEPRYQM-SVGGPEYALEFTAFAML 207

Query: 196 SG--LAPAQGMDCSKRAAEQVAAAEV 219
                    G   SKR A+  AA + 
Sbjct: 208 GDSKEVLGVGNGSSKRKAQLAAAEQA 233


>gi|33864214|ref|NP_895774.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9313]
 gi|33635798|emb|CAE22123.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9313]
          Length = 281

 Score =  188 bits (478), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 63/204 (30%), Positives = 100/204 (49%), Gaps = 7/204 (3%)

Query: 24  EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83
           ++ALTH+S       ++ERLEFLGD +L L  S  +  HF     GE S     LVS   
Sbjct: 55  DEALTHTSAQEII--NHERLEFLGDAVLRLAASEYIDRHFPRMNVGERSALRAHLVSDRW 112

Query: 84  CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY-LDGGIEVAGTFVDKY 142
            ++V + + + S + +      D  S   ++QA+  E+LI ALY     +E    ++  +
Sbjct: 113 LAEVGQRIGIESVLIIGPMAAGD-ASAKPTLQAEATEALIGALYECWQSLEPIHRWLTPH 171

Query: 143 WKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISGLA 199
           W++   A+ +   R ++K+ LQEW+ A+    P Y+   RS    DP R+   V +    
Sbjct: 172 WQEASSAVLTDPHRLNSKSALQEWSQARGLGLPRYECAERSKQHGDPQRYVCQVHLDDRP 231

Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223
             +G   S+R AEQ AA   L+  
Sbjct: 232 IGEGWGGSRRNAEQEAARRSLQAL 255


>gi|328723672|ref|XP_003247913.1| PREDICTED: ribonuclease 3-like [Acyrthosiphon pisum]
          Length = 1273

 Score =  187 bits (477), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 103/227 (45%), Gaps = 14/227 (6%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E  IG  F +  LL +A T  S   ++    S +RLEFLGD +L L+ S  L+ +
Sbjct: 964  KLTNFEDSIGIKFTHIRLLARAFTDRSVGFTNLTLGSNQRLEFLGDTVLQLIASDYLYKY 1023

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG LS+  +SLV+  T S V  +L + S+               T  +AD++E+ 
Sbjct: 1024 FPEHHEGHLSLLRSSLVNNRTQSVVCDDLGMVSYALY----ANPKAELKTKDRADLLEAF 1079

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGV------TPE 174
            + ALY+D G+     F +  +  R       +   D K++LQ+       V       P 
Sbjct: 1080 LGALYIDKGLTFCQAFCNVCFFPRLHDFILKQDWNDPKSKLQQCCLTLRSVDGGEPDIPV 1139

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            YKV    GP +  ++TV V    +  +Q    S + AE  AA   L+
Sbjct: 1140 YKVIECMGPTNGRKYTVAVYFKSVRLSQATGHSIQRAEMNAANSALE 1186



 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 50/208 (24%), Positives = 75/208 (36%), Gaps = 55/208 (26%)

Query: 5   RYSTLEKRIGYAFANRSLLEKA--------------------LT--------------H- 29
               LE  I Y F N+ LL+ A                    LT              H 
Sbjct: 732 SLEYLEDTIEYKFKNKYLLQLALTHPSYRENFGTNPDHARNTLTNCGIRQPEYGDRRIHY 791

Query: 30  --------------------SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
                                S   S     ERLEFLGD ++  + S  LFN F   +EG
Sbjct: 792 MNTRKRGINTLINIMSRFGKKSEMESNIMHNERLEFLGDAVVEFVSSIHLFNMFPDIEEG 851

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
            L+    ++V  +  + +A+ L L  F+  +        S +    A+  E+L+ AL+LD
Sbjct: 852 GLATFRAAIVQNQHLAVLAKTLKLDDFMLYAHGSDLCHDSELKHAMANCFEALMGALFLD 911

Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDA 157
           GGIEVA     K + + + +      + 
Sbjct: 912 GGIEVADRVFGKTFYRDSPEYLDIWVNY 939


>gi|119713398|gb|ABL97460.1| ribonuclease III [uncultured marine bacterium HF130_81H07]
          Length = 220

 Score =  187 bits (477), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 115/226 (50%), Gaps = 10/226 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+   +  LEK +GY+F  +  L KALTH S     +E+ E  EFLGD +L L+IS +L 
Sbjct: 1   MNK-DFKKLEKNLGYSFQKKETLVKALTHVS---KSKENNEVFEFLGDSVLNLIISQILV 56

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             F    EG LS+  + LVS  T +++A++L+L SFI     L         +I  + +E
Sbjct: 57  EKFSMDDEGTLSLMRSKLVSRTTLNKIAKKLELDSFIVKGDSLA--GQETPENILGNSLE 114

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           ++  A+Y + G+E     ++  + +   L      +++KT LQE+        P Y    
Sbjct: 115 AIFGAVYKESGLEFIQKIIETTFAKEIELLREGNLKNSKTLLQEYCQKNKFSLPTYNQIE 174

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           +   ++   F V  ++   + ++G   S + AEQ AAA +LK+ G+
Sbjct: 175 KK--ENIYPFIVTCKLDD-SSSEGFGKSLKLAEQDAAARLLKKIGV 217


>gi|312384091|gb|EFR28902.1| hypothetical protein AND_02573 [Anopheles darlingi]
          Length = 1155

 Score =  187 bits (477), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 99/227 (43%), Gaps = 14/227 (6%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
            +  E  IG  F +  LL +A T  S   +     + +RLEFLGD +L L+ +  ++ HF
Sbjct: 676 LTRFEDSIGVKFNHIRLLARAFTDRSRGYTALTLGTNQRLEFLGDAVLKLIGTEHVYRHF 735

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
                  L+   N LVS  T + V  +L +A +  +S+             +AD++E+ I
Sbjct: 736 PKHHSQHLADWRNQLVSNRTLATVCDDLGMAHYAIISNP----KTELKMKDRADLLEAFI 791

Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGV------TPEY 175
            ALY+D G+       +     R   L   + R D KT+LQ+  HA   +       P Y
Sbjct: 792 GALYVDKGLLHCEKLCEVCLFPRLQELIENQERNDPKTKLQQHCHATHPMYGSTPDHPLY 851

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           K+    G   +   TV V   G   A     S R AE+ AA   L++
Sbjct: 852 KLIGCIGSMKNRVCTVGVYFRGKQLAIANGHSIRQAEENAARLALEQ 898



 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/197 (24%), Positives = 74/197 (37%), Gaps = 49/197 (24%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHS----------------------------- 35
               LEK+I Y F NR  L+ ALTH + +++                             
Sbjct: 459 SLDVLEKQIDYRFTNRYTLQLALTHRTYANNGGTNPDHVRNVLANCGILNMNPRKRNVHS 518

Query: 36  --------------YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
                          +   ERL FLGD ++    S  LF+ F +  EG LSV   ++V  
Sbjct: 519 MIRPHSGKKSETAFNRRHNERLAFLGDAVIVFSASVPLFHMFPNLGEGGLSVYRGAIVEK 578

Query: 82  ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA-GTFVD 140
           +    +A++L L  F+R +               AD  ++L+ AL LDGGI VA   F  
Sbjct: 579 QHLVVLAKKLHLEEFLRCAHGSAASN-----RTVADCFQALMGALLLDGGIAVASRVFAS 633

Query: 141 KYWKQRALKSGKFRRDA 157
             +     K  +   + 
Sbjct: 634 TLYGPDEPKLHEIWTNY 650


>gi|326798772|ref|YP_004316591.1| ribonuclease 3 [Sphingobacterium sp. 21]
 gi|326549536|gb|ADZ77921.1| Ribonuclease 3 [Sphingobacterium sp. 21]
          Length = 243

 Score =  187 bits (477), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 64/225 (28%), Positives = 100/225 (44%), Gaps = 9/225 (4%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHF 63
            L+  +G+   N  L + A  H S++       + S ERLEFLGD ILG +++ LLF  +
Sbjct: 20  ALKNLLGFIPGNLYLYQMAFRHKSVAVQVKKGTKNSNERLEFLGDAILGAVVAELLFKMY 79

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG L+   + +VS    +Q+AR+L     I+  S +        +S+  D  E+LI
Sbjct: 80  PYKDEGFLTEMRSKIVSRVHLNQLARKLGFDELIQYDSKMVGYPGK-SSSLLGDAFEALI 138

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKS---GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            A+YLD G      F+     +  +      +   + K+ L EW  +             
Sbjct: 139 GAVYLDKGYMFTRNFLLSRIIKPHVDIHLLEQTETNFKSRLIEWCQSTGNEVLFEVANNA 198

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            G      FTV   ISG     G D +K+ AE++AA +  +  GI
Sbjct: 199 EGES-AKLFTVEAIISGEVRGTGRDYNKKNAEKLAAEKACEALGI 242


>gi|313224789|emb|CBY20581.1| unnamed protein product [Oikopleura dioica]
          Length = 538

 Score =  187 bits (477), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 105/227 (46%), Gaps = 11/227 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           R + LE+ +G  F N  LL KALT  +   +   +   +RLEFLGD I   L +  LF H
Sbjct: 210 RCAELEELLGVKFKNIRLLAKALTLKNVKYNDITKGHNQRLEFLGDAICNFLAAEYLFKH 269

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L++   ++V A T + VA+++ L  F+     L  D   +   I AD++ES 
Sbjct: 270 FPLHHEGHLTLLRCTMVGAPTQALVAQQIGLDKFVISRQSLSHDKMGWKQKILADLMESF 329

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGV-----TPEY 175
           I AL++D GI     F+   +  R       +   D K+ LQ+              PEY
Sbjct: 330 IGALFIDRGIIAVDVFMKVAFYPRLKHFIMSQVWNDPKSCLQQCCLTLRPEEGTPDLPEY 389

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           + T  +      R+ V V   G    +G   S + AE+ AA + L++
Sbjct: 390 RTT--TSNSSKMRYRVEVFFRGERIGEGHGPSIQLAEKFAARKALEK 434



 Score = 98.6 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 64/126 (50%), Gaps = 2/126 (1%)

Query: 26  ALTHSSISHSYQESY-ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
           AL  +S       +Y ER EFLGD +LG ++S  +F+ F +  EG LS+   +LV     
Sbjct: 54  ALLGTSEPKESPINYLERPEFLGDAVLGFVVSVSIFHLFPNLGEGALSMLRCALVCNVHL 113

Query: 85  SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK-YW 143
           + +A++L L  +              + +  A+  E+++ A+Y+DGG+E     + +  +
Sbjct: 114 AALAQKLTLEDYFVYIHSQDLAKREDLNNALANCFEAVLGAIYMDGGLEPVRQLLARVLF 173

Query: 144 KQRALK 149
             +AL+
Sbjct: 174 DDKALQ 179


>gi|228470695|ref|ZP_04055546.1| ribonuclease III [Porphyromonas uenonis 60-3]
 gi|228307552|gb|EEK16548.1| ribonuclease III [Porphyromonas uenonis 60-3]
          Length = 243

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 66/225 (29%), Positives = 98/225 (43%), Gaps = 14/225 (6%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLF 60
             ++L  RIG       L   A+ H S +       + + ERLEFLGD +L   I T L+
Sbjct: 11  DLTSLFDRIGIVPVRTDLYLLAMRHRSCTIIGEGGEKLNNERLEFLGDAVLEASICTYLY 70

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           +   +  EG+LS   +SLVS    ++V R L L  +I +      +       I  + VE
Sbjct: 71  HLHPTWDEGDLSKCKSSLVSRPVNNEVGRRLHLERYIIMVPSALDNSVD----IYGNTVE 126

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF----RRDAKTELQEWAHAKFGVTPEYK 176
           +LI A+YLD G      FV  Y         +      ++ K+EL EW         E++
Sbjct: 127 ALIGAIYLDQGYARTQDFVRDYILPTYRDMREHTVASIQNYKSELIEWVQKHHLSH-EFR 185

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +       HD  F   V I G    +G   SK+ A+Q AA + L+
Sbjct: 186 LEEHQTMPHD-HFIYSVWIDGKPVGRGAGSSKKRAQQEAARDTLE 229


>gi|327403887|ref|YP_004344725.1| Ribonuclease 3 [Fluviicola taffensis DSM 16823]
 gi|327319395|gb|AEA43887.1| Ribonuclease 3 [Fluviicola taffensis DSM 16823]
          Length = 240

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 65/218 (29%), Positives = 108/218 (49%), Gaps = 10/218 (4%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           R GY   N  L  +A+TH SI++  Q+    ERLEFLGD IL  +I+  LF  F    EG
Sbjct: 26  RFGYRPKNIELFYQAVTHRSIAYHGQKDFSNERLEFLGDAILDSIIAEFLFQRFPEEDEG 85

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
            L+   + +VS +T S++  EL+L S +R +     +    ++S++ +  E++I A+YLD
Sbjct: 86  YLTKVKSKVVSRKTLSEIGEELELRSILRYNKGRSIN----LSSLEGNAFEAIIGAIYLD 141

Query: 130 GGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
              E     +  +  ++ +   K      D K++L  W+  +     E+ V         
Sbjct: 142 SSYEETKKIIYNHIFRKYVDLNKILEEEIDFKSKLFIWSQKRRLAL-EFVVLREENNHGT 200

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             + V+V+++ +   +G   SK+ AEQ AA E L   G
Sbjct: 201 WFYEVIVQVNSVNYGKGSGNSKKLAEQAAAKETLILMG 238


>gi|71894685|ref|YP_278793.1| dsRNA-specific ribonuclease III [Mycoplasma synoviae 53]
 gi|90101629|sp|Q4A589|RNC_MYCS5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|71851473|gb|AAZ44082.1| dsRNA-specific ribonuclease III [Mycoplasma synoviae 53]
          Length = 231

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 66/225 (29%), Positives = 108/225 (48%), Gaps = 6/225 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLL 59
           S        ++    + N  L  +A TH + S  +   + YERLEFLGD ++G LIS   
Sbjct: 8   SIEELKAFLQKNNIEYKNIDLFIEATTHKTYSKVNKNSKDYERLEFLGDSLVGFLISDYC 67

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
              F S + GELS   + LV      ++A++L +   I+      ++     +++ +DVV
Sbjct: 68  VREFSSLEPGELSRLRSKLVDKLALFKIAQKLKVEQIIKTGPKKARNEVLSSSNVLSDVV 127

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           E+LIAA+YLD G++ A  F+  ++ + A K+  K  +D K+ELQE+       T +Y+  
Sbjct: 128 EALIAAIYLDQGMQSAKDFIKSHFYEIANKAQNKPNKDPKSELQEYFQTISAETVKYETI 187

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                 +   F             G+  SK+ AE+ AAA  L + 
Sbjct: 188 EI---PNKRSFESKAWHLNKIYGTGVGLSKKDAEKNAAANALSKL 229


>gi|198459728|ref|XP_001361471.2| GA21287 [Drosophila pseudoobscura pseudoobscura]
 gi|198136788|gb|EAL26049.2| GA21287 [Drosophila pseudoobscura pseudoobscura]
          Length = 1292

 Score =  187 bits (475), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 64/228 (28%), Positives = 96/228 (42%), Gaps = 14/228 (6%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
              +  E  IG  F +  LL +A T  S   +H    S +RLEFLGD +L L+ S  L+ H
Sbjct: 939  DLTKFEDSIGLKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLISSEYLYRH 998

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG LS+  +SLV+  T + V  +L +  +               T  +AD++E+ 
Sbjct: 999  FPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMTKYAVY----ANPKADLKTKDRADLLEAF 1054

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKF------GVTPE 174
            + +LY+D G+     F       R       +   D K++LQ+               P 
Sbjct: 1055 LGSLYVDKGLLFCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPY 1114

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YKV   SGP +   + V V       A     S + AE  AA + L+ 
Sbjct: 1115 YKVVEASGPTNTRVYKVAVYFRSKRLATSSGASIQQAEMNAAKQALEN 1162



 Score = 78.2 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 42/149 (28%), Positives = 65/149 (43%), Gaps = 14/149 (9%)

Query: 39  SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
             ERLEFLGD ++  L S  LF  F   +EG L+    ++V  +  + +A++L L  F+ 
Sbjct: 796 HNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEEFML 855

Query: 99  VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA-GTFVDKYWKQRALKSGKFRRDA 157
            +          +    A+  E+L+ AL LDGGI+VA   F +  +++     GK     
Sbjct: 856 YAHGSDLCHELELRHAMANCFEALMGALLLDGGIKVADEVFTEALFRKE----GKLLNIW 911

Query: 158 KT----ELQEWAH---AKFGVTPEYKVTF 179
           K      LQE              Y+V  
Sbjct: 912 KNLPEHPLQE--QEPLGDRRCIDSYRVLK 938


>gi|315606951|ref|ZP_07881957.1| ribonuclease III [Prevotella buccae ATCC 33574]
 gi|315251332|gb|EFU31315.1| ribonuclease III [Prevotella buccae ATCC 33574]
          Length = 371

 Score =  187 bits (475), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 110/226 (48%), Gaps = 13/226 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61
           Y++L   IG+   +  L E+AL H S+    +     + ERLEFLGD IL  ++  ++F 
Sbjct: 20  YTSLYDIIGFYPRDIRLYEQALMHKSVMRRNAKGRPVNNERLEFLGDAILDAIVGDIVFK 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF   +EG L+   + LV  +T +++A+E+ ++  I +S+       S  + +  +  E+
Sbjct: 80  HFPGKREGFLTNTRSKLVQRDTLNKLAQEMGISQLI-LSNG---HNSSHNSYLGGNAFEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178
           L+ ALYLD G +    F+ K    + +   K      + K++L EW      V  ++K+ 
Sbjct: 136 LVGALYLDRGYDACMKFMQKRILSQMINIDKVAYKEVNFKSKLIEWGQKN-RVKLDFKLL 194

Query: 179 FR-SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +    D +P F     I G     G   SK+ ++Q A+   L++ 
Sbjct: 195 SQGKDKDGNPMFAYQAVIEGCEGGTGKGYSKKESQQTASKLTLEKL 240


>gi|312871483|ref|ZP_07731577.1| ribonuclease III [Lactobacillus iners LEAF 3008A-a]
 gi|311093003|gb|EFQ51353.1| ribonuclease III [Lactobacillus iners LEAF 3008A-a]
          Length = 189

 Score =  187 bits (475), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 61/183 (33%), Positives = 93/183 (50%), Gaps = 4/183 (2%)

Query: 1   MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLIST 57
           M +  + + L+++    F N  LLE+ALTHSS S+ +Q  ++YE+LEFLGD +L L IS 
Sbjct: 1   MVSESFKNELQEKYQIKFNNEQLLEQALTHSSYSNEHQGCKNYEKLEFLGDAVLELAISD 60

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            L+ HF +  EGEL+   +++V  E  SQ A E   +  +++     K       ++  D
Sbjct: 61  YLYRHFPNMNEGELTRMRSNIVRTEGFSQFATECGFSREVKLGKGEEKSGSRTRHTLLED 120

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYK 176
           V E+   AL+LD G+     F+         +      RD KTELQE       +  +YK
Sbjct: 121 VFEAFNGALFLDQGMPAVQHFLHLTVYPLIAEGDFDSSRDYKTELQEKLQVNGAIDIQYK 180

Query: 177 VTF 179
           V  
Sbjct: 181 VID 183


>gi|324501501|gb|ADY40667.1| Ribonuclease 3 DROSHA [Ascaris suum]
          Length = 1304

 Score =  186 bits (474), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 61/226 (26%), Positives = 100/226 (44%), Gaps = 11/226 (4%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
             +  EK IG  F +  +L KA T  +   ++      +RLEFLGD +L L+ +  L+ HF
Sbjct: 999  LTEFEKSIGVTFKHIRVLAKAFTRRNVGFNNLTLGHNQRLEFLGDTVLQLITTDYLYKHF 1058

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS-FMTSIQADVVESL 122
                EG LS+    LVS +T S +  ++ +  ++ +   ++K+         +AD+VES 
Sbjct: 1059 PMHHEGHLSILRTCLVSNKTQSVICDDVGMTKYLVMPKAMQKNGAPVLRVKDKADLVESF 1118

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWA----HAKFGVT--PE 174
            + ALY+D G+     F    +  R       +   D K++LQ+          G    PE
Sbjct: 1119 LGALYVDRGLGYCKVFCRVCFFPRLKFFIVSQRWNDPKSQLQQCCLTLRQVDGGEPDIPE 1178

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            Y+     GP +   + V V       A G   + + A+  AA   L
Sbjct: 1179 YRTIAVEGPTNTRVYKVAVYFRKKRLAVGSGHTMQIAQMHAAENAL 1224



 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 51/101 (50%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
              ERLEFLGD ++  + +  LF  F    EG L+   +++V  +  + +A+++ L  F+
Sbjct: 854 NHNERLEFLGDAVIEFITTIHLFFMFTELDEGGLATYRSTMVQNKNLAVLAKKIGLDEFM 913

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138
             +        S +    A+  E+++AA+YLD GI+     
Sbjct: 914 LYAHGPDLCHESDLRHAMANAFEAMMAAIYLDAGIDECDRI 954



 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 18/119 (15%)

Query: 10  EKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           E+RI Y F NRSLLE ALTH S   ++     + R     + +    + +      D   
Sbjct: 768 EERIHYIFKNRSLLELALTHPSYRTNYGTNPDHAR-----NTLNNCGVRSAKQRAQDKMV 822

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           + +LS +        T  ++  +L        S  + +   +        + +++I  +
Sbjct: 823 QQQLSAKKRGF---HTLMEIMSKLG-------SKKVEQSPLNHNER-LEFLGDAVIEFI 870


>gi|195151442|ref|XP_002016656.1| GL11697 [Drosophila persimilis]
 gi|194110503|gb|EDW32546.1| GL11697 [Drosophila persimilis]
          Length = 1262

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 64/228 (28%), Positives = 96/228 (42%), Gaps = 14/228 (6%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
              +  E  IG  F +  LL +A T  S   +H    S +RLEFLGD +L L+ S  L+ H
Sbjct: 939  DLTKFEDSIGLKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLISSEYLYRH 998

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG LS+  +SLV+  T + V  +L +  +               T  +AD++E+ 
Sbjct: 999  FPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMTKYAVY----ANPKADLKTKDRADLLEAF 1054

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKF------GVTPE 174
            + +LY+D G+     F       R       +   D K++LQ+               P 
Sbjct: 1055 LGSLYVDKGLLFCEQFCHVCLFPRLQLFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPY 1114

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YKV   SGP +   + V V       A     S + AE  AA + L+ 
Sbjct: 1115 YKVVEASGPTNTRVYKVAVYFRSKRLATSSGASIQQAEMNAAKQALEN 1162



 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/149 (28%), Positives = 65/149 (43%), Gaps = 14/149 (9%)

Query: 39  SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
             ERLEFLGD ++  L S  LF  F   +EG L+    ++V  +  + +A++L L  F+ 
Sbjct: 796 HNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEEFML 855

Query: 99  VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA-GTFVDKYWKQRALKSGKFRRDA 157
            +          +    A+  E+L+ AL LDGGI+VA   F +  +++     GK     
Sbjct: 856 YAHGSDLCHELELRHAMANCFEALMGALLLDGGIKVADEVFTEALFRKE----GKLLNIW 911

Query: 158 KT----ELQEWAH---AKFGVTPEYKVTF 179
           K      LQE              Y+V  
Sbjct: 912 KNLPEHPLQE--QEPLGDRRCIDSYRVLK 938


>gi|9632031|ref|NP_048820.1| hypothetical protein PBCV1_A464R [Paramecium bursaria Chlorella
           virus 1]
 gi|2500556|sp|Q98514|A464_PBCV1 RecName: Full=Putative protein A464R
 gi|1620135|gb|AAC96831.1| similar to Bacillus ribonuclease III, corresponds to Swiss-Prot
           Accession Number P51833 [Paramecium bursaria Chlorella
           virus 1]
          Length = 275

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 61/222 (27%), Positives = 99/222 (44%), Gaps = 7/222 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFD 64
             +E  IG    + S  + A    S +     + +YER+EF+GD +LG +I+  L+++F 
Sbjct: 52  EDVEYLIGMPIIDFSYYKTAF---SYNAIVEGEATYERMEFVGDSVLGFIIARYLYDNFP 108

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG LS      VS +  S +A  + L +++ +         +    I  DV E+L+ 
Sbjct: 109 GKDEGFLSRLRTKFVSGKFLSSIALRMGLHNYVIMHQKGLYRGWNTNPRILEDVFEALMG 168

Query: 125 ALYLDGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           A+Y D GI  A  F      + A ++S     + K  L +         PE+   F  G 
Sbjct: 169 AIYFDLGINAAKQFFMTTLAKYADMQSLMLDTNYKDRLLKHTRKVELPRPEFVSVFEKGG 228

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
             +P F V V I+G   + G   S++ AEQ A+   L   G+
Sbjct: 229 A-NPSFIVDVVINGQKISTGTGKSRKDAEQNASKIALHTMGV 269


>gi|288925905|ref|ZP_06419835.1| ribonuclease III [Prevotella buccae D17]
 gi|288337329|gb|EFC75685.1| ribonuclease III [Prevotella buccae D17]
          Length = 370

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 110/226 (48%), Gaps = 13/226 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61
           Y++L   IG+   +  L E+AL H S+    +     + ERLEFLGD IL  ++  ++F 
Sbjct: 19  YTSLYDIIGFYPRDIRLYEQALMHKSVMRRNAKGRPVNNERLEFLGDAILDAIVGDIVFK 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF   +EG L+   + LV  +T +++A+E+ ++  I +S+       S  + +  +  E+
Sbjct: 79  HFPGKREGFLTNTRSKLVQRDTLNKLAQEMGISQLI-LSNG---HNSSHNSYLGGNAFEA 134

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178
           L+ ALYLD G +    F+ K    + +   K      + K++L EW      V  ++K+ 
Sbjct: 135 LVGALYLDRGYDACMKFMQKRILSQMINIDKVAYKEVNFKSKLIEWGQKN-RVKLDFKLL 193

Query: 179 FR-SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +    D +P F     I G     G   SK+ ++Q A+   L++ 
Sbjct: 194 SQGKDKDGNPMFAYQAVIEGCEGGTGKGYSKKESQQTASKLTLEKL 239


>gi|333029521|ref|ZP_08457582.1| Ribonuclease 3 [Bacteroides coprosuis DSM 18011]
 gi|332740118|gb|EGJ70600.1| Ribonuclease 3 [Bacteroides coprosuis DSM 18011]
          Length = 276

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 108/222 (48%), Gaps = 13/222 (5%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
             + +G+   +    ++AL H S +   ++    + ERLEFLGD +L  +++ LLF++FD
Sbjct: 23  FYQMLGFVPNDLRYYQQALIHKSSTKVSKDGYYQNNERLEFLGDAVLDAVVADLLFHYFD 82

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             KEG L+   + +V  ET +++A E+ L   I  S+       S    +  +  E+LI 
Sbjct: 83  EKKEGFLTNTRSKIVQRETLNKLAVEIGLDKHIIFSTK----SSSHNNYMFGNAFEALIG 138

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVTFR- 180
           A+YLD G +    F+++    + L   +      + K++L EW          +++    
Sbjct: 139 AIYLDQGYKKCKAFIEQRIIDQFLDLDRLAQTELNFKSKLIEWGQKN-KYKITFELIEEF 197

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                +P F   V + G++  +G+  SK+ ++Q A+ + L +
Sbjct: 198 QDEQSNPVFQTEVLVEGISGGRGVGYSKKESQQNASEKTLDK 239


>gi|218247605|ref|YP_002372976.1| Ribonuclease III [Cyanothece sp. PCC 8801]
 gi|257061062|ref|YP_003138950.1| ribonuclease III [Cyanothece sp. PCC 8802]
 gi|218168083|gb|ACK66820.1| Ribonuclease III [Cyanothece sp. PCC 8801]
 gi|256591228|gb|ACV02115.1| ribonuclease III [Cyanothece sp. PCC 8802]
          Length = 236

 Score =  186 bits (472), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 69/222 (31%), Positives = 114/222 (51%), Gaps = 10/222 (4%)

Query: 5   RYSTLEKRIGYA---FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +  TL +++G +     N   L+ ALTH +IS    ++Y++LEFLGD ++ L  + LL  
Sbjct: 11  QLRTLIQKLGLSEQSPVNYFWLDLALTHPTISQE--KNYQQLEFLGDSVIRLAAAELLLE 68

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +A  GE +   + +VS  T +++A    L S++ VS    KD      S  AD  E+
Sbjct: 69  TYPNAPVGEFAALRSMMVSDRTLAELADSFTLESYLLVSDSAAKDKV-GRVSRLADAFEA 127

Query: 122 LIAALYLD-GGIEVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV- 177
           ++ ALYL    +E+   ++D+    K   ++    R++ K  +QEW  A++ + PEY+V 
Sbjct: 128 VLGALYLSTHTMELIRPWLDELLKVKAEEIRQDPARQNYKDAVQEWTQAQYKLLPEYRVQ 187

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           T +S P   P F   V +       G   SK+ AEQ AA + 
Sbjct: 188 TIKSLPTEQPYFLAEVWLQNRKLGSGEGRSKKMAEQAAAKDA 229


>gi|188995567|ref|YP_001929819.1| putative ribonuclease III [Porphyromonas gingivalis ATCC 33277]
 gi|188595247|dbj|BAG34222.1| putative ribonuclease III [Porphyromonas gingivalis ATCC 33277]
          Length = 261

 Score =  186 bits (472), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 101/227 (44%), Gaps = 14/227 (6%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLF 60
            +  L   +G+  +  +  E A  HSS S      Y+ + ERLEFLGD +L   IS  L+
Sbjct: 22  SFVLLSDILGFKPSRIAFYELAFRHSSCSLVDDEGYRLNNERLEFLGDSVLATAISGYLY 81

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                  EG++S R +++V  +  + VA++L L  F+ V       + S    I  + +E
Sbjct: 82  RQHPHWDEGDMSQRRSAIVKRQINNVVAKKLRLDRFLIV-RGEISQMSSD---IMGNTLE 137

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD----AKTELQEWAHAKFGVTPEYK 176
           +LI A+YLD G + A  FV   +     +      D     K+ L EWA        E++
Sbjct: 138 ALIGAIYLDKGYQAAEKFVLTRFIPVFHELEDSLTDTTTNYKSLLLEWAQKHHLNL-EFR 196

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +       H   F   V + G     G+  +K+ A Q AA + L++ 
Sbjct: 197 LISEPKRAH-GHFNYAVFVDGHRIGSGIGMNKKEAHQNAAHDALEKL 242


>gi|37929016|gb|AAP70345.1| ribonuclease III [Ehrlichia ruminantium]
 gi|37929023|gb|AAP70347.1| ribonuclease III [Ehrlichia ruminantium]
 gi|37929030|gb|AAP70349.1| ribonuclease III [Ehrlichia ruminantium]
 gi|41814830|gb|AAS10486.1| ribonuclease III [Ehrlichia ruminantium]
          Length = 171

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 59/165 (35%), Positives = 91/165 (55%)

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
           +LFN F    EG L+ +  +LV      ++A+ ++L  FI +S   R    +  ++   +
Sbjct: 1   MLFNIFPYDTEGNLAKKKTALVCGTKLVEIAQSINLGIFIIMSDGERSCGGAKNSNNLEN 60

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
            +E+LI A+YLDGG++ A  F+  +WK  A       +DAKT LQEWA +K    P Y +
Sbjct: 61  ALEALIGAIYLDGGLKAAKDFIFLFWKNSATHMKVPPQDAKTILQEWAQSKGFPAPSYHI 120

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             +SGPDH+P FTV V I           +K+ AEQ AA+ +L++
Sbjct: 121 INKSGPDHNPCFTVEVRIDSHETLHATGHNKKLAEQKAASLMLEK 165


>gi|149371093|ref|ZP_01890688.1| putative ribonuclease III [unidentified eubacterium SCB49]
 gi|149355879|gb|EDM44437.1| putative ribonuclease III [unidentified eubacterium SCB49]
          Length = 247

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 106/222 (47%), Gaps = 12/222 (5%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFD 64
           ++K +G+   + ++ E+A TH S +   +E    +YERLEFLGD +L  +I+  L+    
Sbjct: 22  IKKLLGFKPKDITIYEEAFTHRSTNEKTREGHAQNYERLEFLGDAMLSAVIAAHLYKKVP 81

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG L+   + +VS E  +++ R+L+L   +R +  +++       ++  +V ESL+ 
Sbjct: 82  GGNEGYLTKMRSKVVSREHLNELGRDLELIKHLRTTIPIKQFGG----NVHGNVFESLVG 137

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRS 181
           A+YLD G      F++K   +  +   K        K+   EW   K     ++ V   +
Sbjct: 138 AIYLDRGYRYCEKFINKRVIKPYVDIKKLEGKVISYKSLFIEWCQ-KHKSQFKFAVYEDT 196

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           G D    F V + +  +   +    SK+ AE++AA     + 
Sbjct: 197 GNDKLKHFAVKLHLDNVVVGKARATSKKKAEEMAAKRAYYKL 238


>gi|313768337|ref|YP_004062017.1| hypothetical protein MpV1_134 [Micromonas sp. RCC1109 virus MpV1]
 gi|312599033|gb|ADQ91057.1| hypothetical protein MpV1_134 [Micromonas sp. RCC1109 virus MpV1]
          Length = 235

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 67/214 (31%), Positives = 106/214 (49%), Gaps = 10/214 (4%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           E+ +G    N  L +KA TH S    Y+   ES+E LEF+GD +LG +I+  LF+ F+S 
Sbjct: 11  EQLVGTKIKNLDLYQKAFTHKSALKEYEQFTESFETLEFIGDSVLGFVITKFLFDRFESR 70

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +EG L+     LV  ET +++A  L L   + +     ++  +    I  DV E+LI A+
Sbjct: 71  QEGFLTKARTKLVRGETLARIANALGLNELVIMDEKGMRNGWNNNPKILEDVFEALIGAI 130

Query: 127 YLDGGIEVAGTFVDKYWKQR---ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           Y+D G+  A  F+ + ++      L S     + K  L           PEY+V      
Sbjct: 131 YMDIGLIHAKEFILRIYQDPKLVDLNSIMVDDNYKDHLMRHCQVNNWQLPEYRVAA---- 186

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
            H+  F + + I+ L  ++G+  SK+ AEQ AA 
Sbjct: 187 HHEGLFYIDIYINNLFCSRGVAKSKKQAEQNAAQ 220


>gi|17506883|ref|NP_492599.1| Ortholog of Drosophila DRoSHa gene family member (drsh-1)
            [Caenorhabditis elegans]
 gi|20141625|sp|O01326|RNC_CAEEL RecName: Full=Ribonuclease 3; AltName: Full=Protein drosha; AltName:
            Full=Ribonuclease III; Short=RNase III
 gi|15718161|emb|CAB03006.3| C. elegans protein F26E4.10a, confirmed by transcript evidence
            [Caenorhabditis elegans]
          Length = 1086

 Score =  185 bits (471), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 104/228 (45%), Gaps = 13/228 (5%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHF 63
            +  LE+R+G  F N  LL KA T  +I ++   +   +RLE+LGD +L L++S  L+  F
Sbjct: 833  FHALEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEWLGDSVLQLIVSDFLYRRF 892

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
                EG +S+   SLVS +T + V  +L    F+  +              +AD+VE+ I
Sbjct: 893  PYHHEGHMSLLRTSLVSNQTQAVVCDDLGFTEFVIKAP---YKTPELKLKDKADLVEAFI 949

Query: 124  AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGV------TPEY 175
             ALY+D GIE    F+   +  R       +   DAK+ LQ+W  A           PEY
Sbjct: 950  GALYVDRGIEHCRAFIRIVFCPRLKHFIESEKWNDAKSHLQQWCLAMRDPSSSEPDMPEY 1009

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +V    GP ++  F + V   G   A   + +   AE   A   L   
Sbjct: 1010 RVLGIEGPTNNRIFKIAVYYKGKRLASAAESNVHKAELRVAELALANL 1057



 Score = 95.1 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 64/188 (34%), Gaps = 49/188 (26%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE------------------------ 38
                  E+ I Y F +R ++E AL HSS    Y                          
Sbjct: 604 NFSLDVFEEVIEYKFNDRRVIELALMHSSFKSHYGTPIDHVKNMITNCGYRRKYGAEDKR 663

Query: 39  -------------------------SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
                                      ERLE+LGD ++ L++S  L+       EG L+ 
Sbjct: 664 EKKRVAGIMSLFNIMKGTSGGEPILHNERLEYLGDAVVELIVSHHLYFMLTHHFEGGLAT 723

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
              +LV     + +A+   +   ++ S        +      A+  E+++AA+YLDGG+ 
Sbjct: 724 YRTALVQNRNLATLAKNCRIDEMLQYSHGADLINVAEFKHALANAFEAVMAAIYLDGGLA 783

Query: 134 VAGTFVDK 141
                  K
Sbjct: 784 PCDVIFSK 791


>gi|193202651|ref|NP_001122460.1| Ortholog of Drosophila DRoSHa gene family member (drsh-1)
            [Caenorhabditis elegans]
 gi|159572246|emb|CAP19331.1| C. elegans protein F26E4.10b, confirmed by transcript evidence
            [Caenorhabditis elegans]
          Length = 1083

 Score =  185 bits (471), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 104/228 (45%), Gaps = 13/228 (5%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHF 63
            +  LE+R+G  F N  LL KA T  +I ++   +   +RLE+LGD +L L++S  L+  F
Sbjct: 833  FHALEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEWLGDSVLQLIVSDFLYRRF 892

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
                EG +S+   SLVS +T + V  +L    F+  +              +AD+VE+ I
Sbjct: 893  PYHHEGHMSLLRTSLVSNQTQAVVCDDLGFTEFVIKAP---YKTPELKLKDKADLVEAFI 949

Query: 124  AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGV------TPEY 175
             ALY+D GIE    F+   +  R       +   DAK+ LQ+W  A           PEY
Sbjct: 950  GALYVDRGIEHCRAFIRIVFCPRLKHFIESEKWNDAKSHLQQWCLAMRDPSSSEPDMPEY 1009

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +V    GP ++  F + V   G   A   + +   AE   A   L   
Sbjct: 1010 RVLGIEGPTNNRIFKIAVYYKGKRLASAAESNVHKAELRVAELALANL 1057



 Score = 95.1 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 64/188 (34%), Gaps = 49/188 (26%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE------------------------ 38
                  E+ I Y F +R ++E AL HSS    Y                          
Sbjct: 604 NFSLDVFEEVIEYKFNDRRVIELALMHSSFKSHYGTPIDHVKNMITNCGYRRKYGAEDKR 663

Query: 39  -------------------------SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
                                      ERLE+LGD ++ L++S  L+       EG L+ 
Sbjct: 664 EKKRVAGIMSLFNIMKGTSGGEPILHNERLEYLGDAVVELIVSHHLYFMLTHHFEGGLAT 723

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
              +LV     + +A+   +   ++ S        +      A+  E+++AA+YLDGG+ 
Sbjct: 724 YRTALVQNRNLATLAKNCRIDEMLQYSHGADLINVAEFKHALANAFEAVMAAIYLDGGLA 783

Query: 134 VAGTFVDK 141
                  K
Sbjct: 784 PCDVIFSK 791


>gi|124024288|ref|YP_001018595.1| ribonuclease III [Prochlorococcus marinus str. MIT 9303]
 gi|123964574|gb|ABM79330.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9303]
          Length = 262

 Score =  185 bits (471), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 109/242 (45%), Gaps = 22/242 (9%)

Query: 1   MSALRYSTLEKRI---------------GYAFANRSLLEKALTHSSISHSYQESYERLEF 45
           +S  R   L+  +               G      ++L++ALTH+S       ++ERLEF
Sbjct: 17  LSNERVQQLQNLLKKLALVDPARSKSCPGTEPRGLAILDEALTHTSAQEII--NHERLEF 74

Query: 46  LGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK 105
           LGD +L L  S  +  HF     GE S     LVS    ++V + + + + + +      
Sbjct: 75  LGDAVLRLAASEYIDRHFPRMDVGERSALRAHLVSDRWLAEVGQRIGIEAVLIIGPMAAG 134

Query: 106 DVCSFMTSIQADVVESLIAALY-LDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQ 162
           D  S   ++QA+  E+LI ALY     +E    ++  +W +   A+ +   R ++K+ LQ
Sbjct: 135 D-ASAKPTLQAEATEALIGALYECWQSLEPIHHWLTPHWHEASSAVLADPHRLNSKSALQ 193

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           EW+ A+    P Y+   RS    DP R+   V +      +G   S+R AEQ AA   L+
Sbjct: 194 EWSQARGLGLPRYECAERSKQHGDPQRYLCQVHLDNRPIGEGWGGSRRNAEQEAARHSLE 253

Query: 222 RE 223
             
Sbjct: 254 AL 255


>gi|116074432|ref|ZP_01471694.1| putative ribonuclease III [Synechococcus sp. RS9916]
 gi|116069737|gb|EAU75489.1| putative ribonuclease III [Synechococcus sp. RS9916]
          Length = 247

 Score =  185 bits (471), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 64/205 (31%), Positives = 103/205 (50%), Gaps = 7/205 (3%)

Query: 21  SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
           +L+++ALTH+S       ++ERLEFLGD +L L  S  +  H      GE S     LVS
Sbjct: 40  ALVDEALTHTSTGRHI--NHERLEFLGDAVLRLAASEYIEQHHPQLPVGERSALRAQLVS 97

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL-DGGIEVAGTFV 139
               + +   + + +   + +  R D  +   +++A+  E+LI ALY   G IE   +++
Sbjct: 98  DRWLAALGDSIGIEAVQTIGAKARGDDAA-RATLRAEATEALIGALYQGWGSIEPVHSWL 156

Query: 140 DKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEIS 196
             +W+    A+ +   + +AK+ LQEW+ A+    P Y    +S    D  RF   VE+ 
Sbjct: 157 TPHWQRTSAAVLADPHKGNAKSALQEWSQARKLGLPTYCSEEQSQRHGDPKRFRCQVELQ 216

Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLK 221
           G   A+G   S+R AEQ AA   L+
Sbjct: 217 GKTLAEGWGGSRRDAEQRAAQAALQ 241


>gi|37929038|gb|AAP70351.1| ribonuclease III [Ehrlichia ruminantium]
 gi|37929053|gb|AAP70353.1| ribonuclease III [Ehrlichia ruminantium]
 gi|37929097|gb|AAP70355.1| ribonuclease III [Ehrlichia ruminantium]
 gi|37929705|gb|AAP70357.1| ribonuclease III [Ehrlichia ruminantium]
 gi|37929713|gb|AAP70359.1| ribonuclease III [Ehrlichia ruminantium]
          Length = 171

 Score =  185 bits (471), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 59/165 (35%), Positives = 90/165 (54%)

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
           +LFN F    EG L+ +  +LV      ++A+ ++L  FI +S   R    +  ++   +
Sbjct: 1   MLFNIFPYDTEGNLAKKKTALVCGTKLVEIAQSINLGIFIIMSDGERSCGGANNSNNLEN 60

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
            +E+LI A+YLDGG+  A  F+  +WK  A       +DAKT LQEWA +K    P Y +
Sbjct: 61  ALEALIGAIYLDGGLNAAKDFIFLFWKNSATHMKVPPQDAKTILQEWAQSKGFPAPSYHI 120

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             +SGPDH+P FTV V I+          +K+ AEQ AA+ +L +
Sbjct: 121 INKSGPDHNPCFTVEVRINSHETLHATGHNKKLAEQKAASLMLAK 165


>gi|308494532|ref|XP_003109455.1| CRE-DRSH-1 protein [Caenorhabditis remanei]
 gi|308246868|gb|EFO90820.1| CRE-DRSH-1 protein [Caenorhabditis remanei]
          Length = 1073

 Score =  185 bits (471), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 102/226 (45%), Gaps = 13/226 (5%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNH 62
             +  LE  +   F N  LL KA T  ++ H+   +   +RLE+LGD +L L++S  LF  
Sbjct: 820  SFHKLENILNIKFNNIRLLAKAFTRRNVPHNDLTKGHNQRLEWLGDSVLQLVVSDYLFRR 879

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            +    EG +S+   SLVS +T S V  +L    F+                 +AD+VE+ 
Sbjct: 880  YPLHHEGHMSLLRTSLVSNQTQSVVCDDLGFLEFVVKPP---HKTPELKMKDKADLVEAF 936

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWA------HAKFGVTPE 174
            I ALY+D GIE   +F+   +  R     + +   DAK+ LQ+W              P+
Sbjct: 937  IGALYVDRGIEHCRSFIRIVFCPRLKHFINSEQWNDAKSHLQQWCLAIRDAQNPNPAMPD 996

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            Y++    GP ++  F V V   G   A   + +   AE  AA   L
Sbjct: 997  YRILSIEGPTNNRIFKVGVYFRGKRLASAAESNVHKAELKAAEIAL 1042



 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 65/187 (34%), Gaps = 48/187 (25%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE------------------------ 38
               S  E+ I Y F +R ++E AL HSS    Y                          
Sbjct: 593 NFSLSVFEEIIEYQFNDRKVIELALIHSSFRSHYGTPPDHIKNIISNCGYRRKYGSEEKR 652

Query: 39  ------------------------SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
                                     ERLE+LGD ++ L++S  L+       EG L+  
Sbjct: 653 EKKKGIVSLFNIMGGETEGGEPILHNERLEYLGDAVVELIVSHHLYFMLPHHFEGGLATY 712

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
             +LV     + +A+   +   ++ +        +      A+  E+++AA+YLDGG+  
Sbjct: 713 RTALVQNRNLADLAKNCRIDEMLQYAHGADLINEAEWKHALANAFEAVVAAVYLDGGLGA 772

Query: 135 AGTFVDK 141
                 K
Sbjct: 773 CDRLFSK 779


>gi|155371010|ref|YP_001426544.1| hypothetical protein ATCV1_Z063L [Acanthocystis turfacea Chlorella
           virus 1]
 gi|155124330|gb|ABT16197.1| hypothetical protein ATCV1_Z063L [Acanthocystis turfacea Chlorella
           virus 1]
          Length = 268

 Score =  185 bits (471), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 64/222 (28%), Positives = 94/222 (42%), Gaps = 7/222 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             +E  IG    + +L   A    S +      E++ERLEFLGD +LG LI+  L++ F 
Sbjct: 45  EEIEGLIGMPVCDFNLYVTAF---SYNPLEENGETFERLEFLGDSVLGFLIARYLYDVFP 101

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG L+      VS +  S++A +L L  FI +S                D  E+LI 
Sbjct: 102 GKNEGVLTRLRVKFVSGKLLSKLAHQLGLHEFIIMSQKGLYRCWHTNPKTLEDAFEALIG 161

Query: 125 ALYLDGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           A+YLD GI  A  F+     +   +       + K  L +         P +  TF  G 
Sbjct: 162 AIYLDLGINAARQFLMSVLTKHVNIYELMIDANHKDRLVKHCRVLNLAKPTFVTTFERG- 220

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
             +  F V   I  +   +G   +++ AEQ AA   L R GI
Sbjct: 221 GTNSMFVVEARIDNVPHGEGTGTTRKDAEQAAARTALLRLGI 262


>gi|126642554|ref|YP_001085538.1| ribonuclease III [Acinetobacter baumannii ATCC 17978]
          Length = 176

 Score =  185 bits (471), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 52/172 (30%), Positives = 85/172 (49%), Gaps = 3/172 (1%)

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
           ++I+  L++ +    EG L+    +LV  E   ++A +L L+  + +S+   K       
Sbjct: 1   MIIANYLYHAYPHENEGRLTRMRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRE 60

Query: 113 SIQADVVESLIAALYLDGG-IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKF 169
           SI AD VE++I A+YLD   + +    V K++      ++     +D K+ LQE+  A+ 
Sbjct: 61  SILADTVEAIIGAIYLDSSDLNLLKDIVLKWYTPYLDHIEPTDQLKDPKSRLQEYLQARK 120

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              P Y+V    G      F V   + GL+   G   S+R AEQ AAAE+LK
Sbjct: 121 KPLPVYEVVDIQGDAPHQHFKVECLVDGLSKIHGEGSSRRFAEQAAAAEILK 172


>gi|5579373|gb|AAD45518.1|AF160248_1 ribonuclease [Caenorhabditis elegans]
          Length = 860

 Score =  185 bits (471), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 104/228 (45%), Gaps = 13/228 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHF 63
           +  LE+R+G  F N  LL KA T  +I ++   +   +RLE+LGD +L L++S  L+  F
Sbjct: 607 FHALEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEWLGDSVLQLIVSDFLYRRF 666

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG +S+   SLVS +T + V  +L    F+  +              +AD+VE+ I
Sbjct: 667 PYHHEGHMSLLRTSLVSNQTQAVVCDDLGFTEFVIKAP---YKTPELKLKDKADLVEAFI 723

Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGV------TPEY 175
            ALY+D GIE    F+   +  R       +   DAK+ LQ+W  A           PEY
Sbjct: 724 GALYVDRGIEHCRAFIRIVFCPRLKHFIESEKWNDAKSHLQQWCLAMRDPSSSEPDMPEY 783

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +V    GP ++  F + V   G   A   + +   AE   A   L   
Sbjct: 784 RVLGIEGPTNNRIFKIAVYYKGKRLASAAESNVHKAELRVAELALANL 831



 Score = 95.1 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 64/188 (34%), Gaps = 49/188 (26%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE------------------------ 38
                  E+ I Y F +R ++E AL HSS    Y                          
Sbjct: 378 NFSLDVFEEVIEYKFNDRRVIELALMHSSFKSHYGTPIDHVKNMITNCGYRRKYGAEDKR 437

Query: 39  -------------------------SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
                                      ERLE+LGD ++ L++S  L+       EG L+ 
Sbjct: 438 EKKRVAGIMSLFNIMKGTSGGEPILHNERLEYLGDAVVELIVSHHLYFMLTHHFEGGLAT 497

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
              +LV     + +A+   +   ++ S        +      A+  E+++AA+YLDGG+ 
Sbjct: 498 YRTALVQNRNLATLAKNCRIDEMLQYSHGADLINVAEFKHALANAFEAVMAAIYLDGGLA 557

Query: 134 VAGTFVDK 141
                  K
Sbjct: 558 PCDVIFSK 565


>gi|255016282|ref|ZP_05288408.1| ribonuclease III [Bacteroides sp. 2_1_7]
          Length = 256

 Score =  185 bits (470), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 58/224 (25%), Positives = 110/224 (49%), Gaps = 13/224 (5%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHF 63
           +L K +G+   N  + E+AL H S S    +    + ERLEFLGD IL   ++ +++  +
Sbjct: 2   SLSKILGFYPDNLQIYEQALLHKSSSVETGDGKWLNNERLEFLGDGILDAAVADIVYKRY 61

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            + +EG L+   + +V  ET ++VA +L L   +  S+     + S    +  + +E+LI
Sbjct: 62  PNKREGFLTNTRSKIVQRETMNKVAVQLGLDQMVVYSTK----INSHNNHMYGNALEALI 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFR 180
            A+YLD G +V   F+     ++ +      R   + K+ L EW+     ++  + +   
Sbjct: 118 GAIYLDQGYDVCYKFIRDVMIEKYIDVDMLVRKEINFKSNLIEWSQKN-KISISFDLIES 176

Query: 181 -SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +  D +P F   +++ G     G+  SK+ ++Q A+   +KR 
Sbjct: 177 FTDHDGNPVFQSAIKLLGEQIGIGIGYSKKESQQAASKMAVKRL 220


>gi|317504409|ref|ZP_07962390.1| ribonuclease III [Prevotella salivae DSM 15606]
 gi|315664455|gb|EFV04141.1| ribonuclease III [Prevotella salivae DSM 15606]
          Length = 364

 Score =  185 bits (470), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 61/226 (26%), Positives = 109/226 (48%), Gaps = 13/226 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61
           YS+L   +G+   + S  + AL H SI    +     + ERLEFLGD IL  ++  +++ 
Sbjct: 20  YSSLYTILGFYPRDISYYKLALMHKSIMKRNAKGKPVNNERLEFLGDAILDAIVGHIVYQ 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF   +EG L+   + LV  ET +++A EL +   I +S+          + +  +  E+
Sbjct: 80  HFPGKREGFLTNTRSKLVQRETLNKLANELGINQLI-LSNGRSSS---HNSYMGGNAFEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178
           L+ A+YLD G +    F+      + +   K      + K++L EW+     V   + + 
Sbjct: 136 LVGAVYLDRGYDACMNFMKNRILAQMINIDKVAYKEVNFKSKLIEWSQKN-RVRLTFDIL 194

Query: 179 FRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +S  ++  P F   V I G+    G+  SK+ ++Q+A+   L+R 
Sbjct: 195 EQSKDNNGSPVFNYKVVIEGIDGCNGVGYSKKESQQLASKLTLERL 240


>gi|254881153|ref|ZP_05253863.1| ribonuclease III [Bacteroides sp. 4_3_47FAA]
 gi|294777572|ref|ZP_06743023.1| ribonuclease III [Bacteroides vulgatus PC510]
 gi|254833946|gb|EET14255.1| ribonuclease III [Bacteroides sp. 4_3_47FAA]
 gi|294448640|gb|EFG17189.1| ribonuclease III [Bacteroides vulgatus PC510]
          Length = 308

 Score =  185 bits (470), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 58/227 (25%), Positives = 113/227 (49%), Gaps = 13/227 (5%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59
             Y    K +G+   + S+ E+AL H S+S   ++    + ERLEFLGD IL  +++ ++
Sbjct: 18  ESYLRFYKMLGFYPKDISIYEQALLHKSLSVKSEKGRLLNNERLEFLGDAILDAVVADIV 77

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  F+  +EG L+   + +V  ET +++A E+ L   I+ ++       S  + +  +  
Sbjct: 78  YKRFEGKREGFLTNTRSKIVQRETLNRLAIEIGLDKLIKYTA----RQSSHNSYMCGNAF 133

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYK 176
           E+L+ A+YLD G      F++       +   K  R   + K++L EW+         ++
Sbjct: 134 EALVGAIYLDRGYRACKYFMEHRIIGPYINLEKISRKEVNFKSKLIEWSQKN-RFEVTFE 192

Query: 177 VTFRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +  +S    ++P F   V + G++  +G   SK+ ++Q+AA   L +
Sbjct: 193 LITQSHDQGYNPTFESEVLVEGISGGKGTGYSKKESQQMAARVALGK 239


>gi|302344776|ref|YP_003813129.1| ribonuclease III [Prevotella melaninogenica ATCC 25845]
 gi|302149813|gb|ADK96075.1| ribonuclease III [Prevotella melaninogenica ATCC 25845]
          Length = 365

 Score =  185 bits (470), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 59/226 (26%), Positives = 109/226 (48%), Gaps = 13/226 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y +L + IG    + S  + AL H S++    +    + ERLEFLGD IL  ++  +++ 
Sbjct: 31  YLSLYQIIGIIPHDISYYKTALLHKSVARRNAKGKPVNNERLEFLGDAILDAIVGDIVYE 90

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF   +EG L+   + +V  +T +++A+E+ +   I +S+       S  + +  +  E+
Sbjct: 91  HFPGKREGFLTNTRSKIVQRDTLNRLAKEMGIGQLI-LSNG---QTSSHNSYLGGNAFEA 146

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178
           L+ ALYLD G      F+ +    + +   K      + K++L EW+     V  E+K+ 
Sbjct: 147 LVGALYLDHGYNACMKFMKQQVLGKLINIDKVAYKEVNFKSKLIEWSQKN-KVNMEFKLI 205

Query: 179 F-RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +      P F   V + G+   +G   SK+ ++Q A+   L+R 
Sbjct: 206 ENQKDKQGSPTFHFQVIMEGIPCGEGHGYSKKESQQEASKLTLQRL 251


>gi|225010255|ref|ZP_03700727.1| Ribonuclease III [Flavobacteria bacterium MS024-3C]
 gi|225005734|gb|EEG43684.1| Ribonuclease III [Flavobacteria bacterium MS024-3C]
          Length = 256

 Score =  185 bits (470), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 63/221 (28%), Positives = 109/221 (49%), Gaps = 12/221 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61
           ++ +   +G+   N S+ +KA  H S+          +YERLEFLGD +LG +IS  ++N
Sbjct: 31  FTGMRNILGFKPKNLSIYKKAFIHRSLHLKDPQGNPLNYERLEFLGDAMLGAIISKYIYN 90

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
              +A EG L+   + +VS E  +++ +EL+L SF+    D +     F  ++  +V E+
Sbjct: 91  EVPAADEGYLTKMRSKIVSREHLNELGKELNLLSFV----DSKVHKDHFGDNVHGNVFEA 146

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVT 178
           L+ A+YLD G +    F+     +  +   K        K+ L EW   +   T  +++ 
Sbjct: 147 LVGAIYLDRGYKYCENFIYLKIIEPHVDLAKLEGKVTSYKSLLIEWCQKEKK-TFNFQIF 205

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
             SG D    F+V + I+    ++G   SK+ AE+ AA   
Sbjct: 206 EDSGNDPIKHFSVRLAINKKVISKGRGPSKKKAEEQAAKRA 246


>gi|134102537|ref|YP_001108198.1| ribonuclease III [Saccharopolyspora erythraea NRRL 2338]
 gi|291007096|ref|ZP_06565069.1| ribonuclease III [Saccharopolyspora erythraea NRRL 2338]
 gi|133915160|emb|CAM05273.1| ribonuclease III [Saccharopolyspora erythraea NRRL 2338]
          Length = 236

 Score =  185 bits (470), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 62/196 (31%), Positives = 95/196 (48%), Gaps = 8/196 (4%)

Query: 19  NRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           +  LL  ALTH S ++        ERLEFLGD +LGL+I+  L+N      EG+L+    
Sbjct: 9   DAELLTLALTHRSYAYENGGLPPNERLEFLGDAVLGLVITDRLYNEHPDLPEGQLAKLRA 68

Query: 77  SLVSAETCSQVA---RELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           S+V+    + VA    E  L  ++ +             SI AD +E+++ A+YL  GI+
Sbjct: 69  SVVNMHALAGVARGLGEGGLGEYLLLGRGEELTGGRDKASILADGLEAVLGAVYLQDGID 128

Query: 134 VAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
           VA   + + ++    ++ +     D KT LQE   A     PEY+V    GPDH   F+ 
Sbjct: 129 VARDVIHRLFEPLLTEAPQRGAGLDWKTSLQELTAAAALGVPEYRV-EEQGPDHRKEFSA 187

Query: 192 VVEISGLAPAQGMDCS 207
            V ++G    QG   +
Sbjct: 188 YVSVAGDTLGQGGGRT 203


>gi|150003618|ref|YP_001298362.1| putative ribonuclease III [Bacteroides vulgatus ATCC 8482]
 gi|189043292|sp|A6KZ76|RNC_BACV8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|149932042|gb|ABR38740.1| putative ribonuclease III [Bacteroides vulgatus ATCC 8482]
          Length = 308

 Score =  184 bits (469), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 58/227 (25%), Positives = 113/227 (49%), Gaps = 13/227 (5%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59
             Y    K +G+   + S+ E+AL H S+S   ++    + ERLEFLGD IL  +++ ++
Sbjct: 18  ESYLRFYKMLGFYPKDISIYEQALLHKSLSVKSEKGRLLNNERLEFLGDAILDAVVADIV 77

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  F+  +EG L+   + +V  ET +++A E+ L   I+ ++       S  + +  +  
Sbjct: 78  YKRFEGKREGFLTNTRSKIVQRETLNRLAIEIGLDKLIKYTA----RQSSHNSYMCGNAF 133

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYK 176
           E+L+ A+YLD G      F++       +   K  R   + K++L EW+         ++
Sbjct: 134 EALVGAIYLDRGYRACKYFMEHRIIGPYINLEKISRKEVNFKSKLIEWSQKN-RFEVTFE 192

Query: 177 VTFRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +  +S    ++P F   V + G++  +G   SK+ ++Q+AA   L +
Sbjct: 193 LITQSHDQGYNPTFESEVLVEGISGGKGTGYSKKESQQMAARVALGK 239


>gi|37928957|gb|AAP70337.1| ribonuclease III [Ehrlichia ruminantium]
 gi|37928988|gb|AAP70339.1| ribonuclease III [Ehrlichia ruminantium]
 gi|37929002|gb|AAP70341.1| ribonuclease III [Ehrlichia ruminantium]
 gi|37929010|gb|AAP70343.1| ribonuclease III [Ehrlichia ruminantium]
          Length = 171

 Score =  184 bits (469), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 59/165 (35%), Positives = 91/165 (55%)

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
           +LFN F    EG L+ +  +LV      ++A+ ++L  FI +S   R    +  ++   +
Sbjct: 1   MLFNIFPYDTEGNLAKKKTALVCGTKLVEIAQSINLGIFIIMSDGERSCGGANNSNNLEN 60

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
            +E+LI A+YLDGG++ A  F+  +WK  A       +DAKT LQEWA +K    P Y +
Sbjct: 61  ALEALIGAIYLDGGLKAAKDFIFLFWKNSATHMKVPPQDAKTILQEWAQSKGFPAPSYHI 120

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             +SGPDH+P FTV V I+          +K+ AEQ AA+ +L +
Sbjct: 121 INKSGPDHNPCFTVEVRINSHETLHATGHNKKLAEQKAASLMLAK 165


>gi|325281581|ref|YP_004254123.1| Ribonuclease 3 [Odoribacter splanchnicus DSM 20712]
 gi|324313390|gb|ADY33943.1| Ribonuclease 3 [Odoribacter splanchnicus DSM 20712]
          Length = 246

 Score =  184 bits (469), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 63/222 (28%), Positives = 101/222 (45%), Gaps = 18/222 (8%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAK 67
           +IG+   N+SL   AL H S S    +    +YERLEFLGD +LG +++ LL+  F    
Sbjct: 26  QIGFVPNNKSLYRLALLHKSASKMTSKGVVLNYERLEFLGDAVLGAIVAELLYKFFPKKD 85

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG L+   + +VS E+ +++A  + L   +     + K   S    I  DV E+ I A++
Sbjct: 86  EGFLTRVRSKVVSRESLNELAINIGLDKAV-----VAKSDISRNKHIYGDVFEAFIGAMF 140

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           LD G      F++K+                + K+ L EW      V   ++    +   
Sbjct: 141 LDQGFVNTKRFIEKFIFPNFFDIKDLVTIDTNYKSRLIEWGQKN-KVDIHFQTDEVAR-- 197

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA---EVLKRE 223
              +F   V +S     +G   SK+ AEQ AA    ++L +E
Sbjct: 198 GRRKFCCTVMLSEEEKGKGEGTSKKEAEQNAAKIVIDILSKE 239


>gi|261878907|ref|ZP_06005334.1| ribonuclease III [Prevotella bergensis DSM 17361]
 gi|270334489|gb|EFA45275.1| ribonuclease III [Prevotella bergensis DSM 17361]
          Length = 366

 Score =  184 bits (469), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 61/224 (27%), Positives = 110/224 (49%), Gaps = 13/224 (5%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHF 63
           +L + IG+   + S  + AL H S++   +     + ERLEFLGD IL   +  +++ HF
Sbjct: 28  SLYRIIGFYPHDISHYKMALLHKSVTQHNKMGKRVNNERLEFLGDAILDAAVGDIVYRHF 87

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
              KEG L+   + LV  +T +++A+EL +   I +S+       S  + +  +  E+L+
Sbjct: 88  PGKKEGFLTNTRSKLVQRDTLNKLAKELGINDLI-LSNG---CSSSHNSYMGGNAFEALV 143

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVTFR 180
            A+YLD G +    F+ K    + +   K      + K++L EW+        ++++   
Sbjct: 144 GAIYLDRGYDACMHFLKKRILAQMINIDKMAYKEVNFKSKLIEWSQKNHIKM-DFELLKE 202

Query: 181 -SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               +  P F+  V + G+A  +G   SK+ ++Q A  E LKR 
Sbjct: 203 DKDKNGSPTFSYRVMLEGIAGCEGTGFSKKESQQKACKETLKRL 246


>gi|288801829|ref|ZP_06407271.1| ribonuclease 3 (Ribonuclease III) (RNase III) [Prevotella
           melaninogenica D18]
 gi|288335871|gb|EFC74304.1| ribonuclease 3 (Ribonuclease III) (RNase III) [Prevotella
           melaninogenica D18]
          Length = 354

 Score =  184 bits (468), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 59/226 (26%), Positives = 109/226 (48%), Gaps = 13/226 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y +L + IG    + S  + AL H S++    +    + ERLEFLGD IL  ++  +++ 
Sbjct: 20  YLSLYQIIGIIPHDISYYKTALLHKSVARRNAKGKPINNERLEFLGDAILDAIVGDIVYE 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF   +EG L+   + +V  +T +++A+E+ +   I +S+       S  + +  +  E+
Sbjct: 80  HFPGKREGFLTNTRSKIVQRDTLNRLAKEMGIGQLI-LSNG---QTSSHNSYLGGNAFEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178
           L+ ALYLD G      F+ +    + +   K      + K++L EW+     V  E+K+ 
Sbjct: 136 LVGALYLDHGYNACMKFMKQQVLGKLINIDKVAYKEVNFKSKLIEWSQKN-KVNMEFKLI 194

Query: 179 F-RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +      P F   V + G+   +G   SK+ ++Q A+   L+R 
Sbjct: 195 ENQKDKQGSPTFHFQVIMEGIPCGEGHGYSKKESQQEASKLTLQRL 240


>gi|87117496|gb|ABD20047.1| Rnc [Shigella dysenteriae]
          Length = 178

 Score =  184 bits (468), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 3/162 (1%)

Query: 52  GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111
             +I+  L++ F    EG++S    +LV   T +++ARE +L   +R+     K      
Sbjct: 1   SYVIANALYHRFPCVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRR 60

Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKF 169
            SI AD VE+LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   + 
Sbjct: 61  ESILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRH 120

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              P Y V    G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 121 LPLPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 162


>gi|34541386|ref|NP_905865.1| ribonuclease III [Porphyromonas gingivalis W83]
 gi|34397703|gb|AAQ66764.1| ribonuclease III [Porphyromonas gingivalis W83]
          Length = 237

 Score =  184 bits (468), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 100/223 (44%), Gaps = 14/223 (6%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           L   +G+  +  +  E A  HSS S      Y+ + ERLEFLGD +L   IS  L+    
Sbjct: 2   LSDILGFKPSRIAFYELAFRHSSCSLVDDEGYRLNNERLEFLGDSVLATAISGYLYRQHP 61

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG++S R +++V  +  + VA++L L  F+ V       + S    I  + +E+LI 
Sbjct: 62  HWDEGDMSQRRSAIVKRQINNVVAKKLRLDRFLIV-RGEISQMSSD---IMGNTLEALIG 117

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD----AKTELQEWAHAKFGVTPEYKVTFR 180
           A+YLD G + A  FV   +     +      D     K+ L EWA        E+++   
Sbjct: 118 AIYLDKGYQAAEKFVLTRFIPVFHELEDSLTDTTTNYKSLLLEWAQKHHLNL-EFRLISE 176

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               H   F   V + G     G+  +K+ A Q AA + L++ 
Sbjct: 177 PKRAH-GHFNYAVFVDGHRIGSGIGMNKKEAHQNAAHDALEKL 218


>gi|189241708|ref|XP_967454.2| PREDICTED: similar to ribonuclease iii [Tribolium castaneum]
          Length = 1180

 Score =  184 bits (468), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 65/229 (28%), Positives = 104/229 (45%), Gaps = 16/229 (6%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
              +  E+ +G  F +  LL +A T  S   ++    S +RLEFLGD +L L+ S  L+ +
Sbjct: 867  NLTKFEESVGLQFNHIRLLARAFTDRSVGYTNLTLGSNQRLEFLGDTVLQLIASEYLYKY 926

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG LS+  +SLV+  T + V  +L ++++   ++          T  +AD++E+ 
Sbjct: 927  FPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMSNYAVYNNP----KAELKTKDRADLLEAF 982

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKF------GVTPE 174
            I ALY+D G+E    F       R       +   D K++LQ+               P 
Sbjct: 983  IGALYVDQGLEFCEVFCQVTLFPRLQDFIMNQDWNDPKSKLQQCCLTLRTMDGGEPDIPV 1042

Query: 175  YK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            YK  V F +   +   +TV V   G   A  M  S + AE  AA + L+
Sbjct: 1043 YKSVVCFTNSEVNTRVYTVAVYFRGRRLASAMGHSIQQAEMNAAKKALE 1091



 Score = 95.1 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 1/126 (0%)

Query: 39  SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
             ERLEFLGD ++  L S  LF  F   +EG L+    ++V  +  + +A+ L L  F+ 
Sbjct: 724 HNERLEFLGDAVVEFLSSIHLFYTFPDLEEGGLATYRAAIVQNQHLAVLAKTLKLDQFML 783

Query: 99  VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-A 157
            +          +    A+  E+L+ AL+LDGGI V      +   +      +   +  
Sbjct: 784 YAHGSDLCHDLELRHAMANCFEALMGALFLDGGINVVDRVFSETLFKVNPDLLEVWMNLP 843

Query: 158 KTELQE 163
              LQE
Sbjct: 844 PHPLQE 849


>gi|87117424|gb|ABD19999.1| Rnc [Shigella flexneri]
          Length = 178

 Score =  184 bits (468), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 50/162 (30%), Positives = 80/162 (49%), Gaps = 3/162 (1%)

Query: 52  GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111
             +I+  L++ F  A EG++S    +LV   T +++ARE +L   +R+     K      
Sbjct: 1   SYVIANALYHRFPRADEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRR 60

Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKF 169
            SI AD VE+LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   + 
Sbjct: 61  ESILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRH 120

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              P Y V    G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 121 LPLPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 162


>gi|301312334|ref|ZP_07218251.1| ribonuclease III [Bacteroides sp. 20_3]
 gi|300829756|gb|EFK60409.1| ribonuclease III [Bacteroides sp. 20_3]
          Length = 280

 Score =  184 bits (468), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 59/226 (26%), Positives = 111/226 (49%), Gaps = 13/226 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y +L K +G+   N  + E+AL H S S    +    + ERLEFLGD IL   ++ +++ 
Sbjct: 24  YLSLSKILGFYPDNLQIYEQALLHKSSSVETDDGKWLNNERLEFLGDGILDAAVADIVYK 83

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + + +EG L+   + +V  ET ++VA +L L   +  S+     + S    +  + +E+
Sbjct: 84  RYPNKREGFLTNTRSKIVQRETMNKVAVQLGLDQMVVYSTK----INSHNNHMYGNALEA 139

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVT 178
           LI A+YLD G +V   F+     ++ +      R   + K+ L EW+     ++  + + 
Sbjct: 140 LIGAIYLDQGYDVCYKFIRDVMIEKYIDVDTLVRKEINFKSNLIEWSQKN-KISISFDLI 198

Query: 179 FR-SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              +  D +P F   +++ G     G+  SK+ ++Q A+   +KR 
Sbjct: 199 ESFTDHDGNPVFQSAIKLLGEQIGIGIGYSKKESQQAASKMAVKRL 244


>gi|7499923|pir||T21419 hypothetical protein F26E4.13 - Caenorhabditis elegans
          Length = 412

 Score =  184 bits (467), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 104/228 (45%), Gaps = 13/228 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHF 63
           +  LE+R+G  F N  LL KA T  +I ++   +   +RLE+LGD +L L++S  L+  F
Sbjct: 162 FHALEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEWLGDSVLQLIVSDFLYRRF 221

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG +S+   SLVS +T + V  +L    F+  +              +AD+VE+ I
Sbjct: 222 PYHHEGHMSLLRTSLVSNQTQAVVCDDLGFTEFVIKAP---YKTPELKLKDKADLVEAFI 278

Query: 124 AALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGV------TPEY 175
            ALY+D GIE    F+   +  R       +   DAK+ LQ+W  A           PEY
Sbjct: 279 GALYVDRGIEHCRAFIRIVFCPRLKHFIESEKWNDAKSHLQQWCLAMRDPSSSEPDMPEY 338

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +V    GP ++  F + V   G   A   + +   AE   A   L   
Sbjct: 339 RVLGIEGPTNNRIFKIAVYYKGKRLASAAESNVHKAELRVAELALANL 386



 Score = 86.3 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 48/103 (46%)

Query: 39  SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
             ERLE+LGD ++ L++S  L+       EG L+    +LV     + +A+   +   ++
Sbjct: 18  HNERLEYLGDAVVELIVSHHLYFMLTHHFEGGLATYRTALVQNRNLATLAKNCRIDEMLQ 77

Query: 99  VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141
            S        +      A+  E+++AA+YLDGG+        K
Sbjct: 78  YSHGADLINVAEFKHALANAFEAVMAAIYLDGGLAPCDVIFSK 120


>gi|282877263|ref|ZP_06286095.1| RNase3 domain protein [Prevotella buccalis ATCC 35310]
 gi|281300604|gb|EFA92941.1| RNase3 domain protein [Prevotella buccalis ATCC 35310]
          Length = 350

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 62/227 (27%), Positives = 109/227 (48%), Gaps = 15/227 (6%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61
           YS+L + IG+   + S  + AL H S+    +     + ERLEFLGD IL   +  +++ 
Sbjct: 20  YSSLYRIIGFYPHDISYYKLALMHKSVMRRNAKGKPVNNERLEFLGDAILDATVGHIVYE 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF   +EG L+   + LV   T +++A E+ +   I +SS       S  + +  +  E+
Sbjct: 80  HFPGKREGFLTNTRSKLVQRSTLNKLANEMGICKLI-LSSG---RNASHNSYMGGNAFEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178
           L+ A+YLD G +    F+     +  L   K      + K++L EW+     V   +K+ 
Sbjct: 136 LVGAIYLDRGYDACMRFMKDRILKEMLNIDKVAYKEVNFKSKLIEWSQKN-KVKINFKLL 194

Query: 179 FRSGPD--HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            + G D   +P F    E+ G+    G   SK+ ++Q+A+   L++ 
Sbjct: 195 NQ-GQDKNGNPVFKYAAELEGIEGCSGEGFSKKESQQLASKLTLEQL 240


>gi|319640160|ref|ZP_07994887.1| ribonuclease 3 [Bacteroides sp. 3_1_40A]
 gi|317388438|gb|EFV69290.1| ribonuclease 3 [Bacteroides sp. 3_1_40A]
          Length = 308

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 60/230 (26%), Positives = 113/230 (49%), Gaps = 19/230 (8%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59
             Y    K +G+   + S+ E+AL H S+S   ++    + ERLEFLGD IL  +++ ++
Sbjct: 18  ESYLRFYKMLGFYPKDISIYEQALLHKSLSVKSEKGRLLNNERLEFLGDAILDAVVADIV 77

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  F+  +EG L+   + +V  ET +++A E+ L   I+ ++       S  + +  +  
Sbjct: 78  YKRFEGKREGFLTNTRSKIVQRETLNRLAIEIGLDKLIKYTA----RQSSHNSYMCGNAF 133

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYK 176
           E+L+ A+YLD G      F++       +   K  R   + K++L EW+         ++
Sbjct: 134 EALVGAIYLDRGYRACKYFMEHRIIGPYINLEKISRKEVNFKSKLIEWSQKN-RFEVTFE 192

Query: 177 VTFRSGPDHD----PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +  +S   HD    P F   V + G++  +G   SK+ ++Q+AA   L +
Sbjct: 193 LITQS---HDQGYSPTFESEVLVEGISGGKGTGYSKKESQQMAARVALGK 239


>gi|87117418|gb|ABD19995.1| Rnc [Shigella flexneri]
 gi|87117421|gb|ABD19997.1| Rnc [Shigella flexneri]
 gi|87117427|gb|ABD20001.1| Rnc [Shigella flexneri]
 gi|87117430|gb|ABD20003.1| Rnc [Shigella dysenteriae]
 gi|87117433|gb|ABD20005.1| Rnc [Shigella flexneri]
 gi|87117436|gb|ABD20007.1| Rnc [Shigella flexneri]
 gi|87117439|gb|ABD20009.1| Rnc [Shigella flexneri]
 gi|87117442|gb|ABD20011.1| Rnc [Shigella boydii]
 gi|87117445|gb|ABD20013.1| Rnc [Shigella dysenteriae]
 gi|87117448|gb|ABD20015.1| Rnc [Shigella dysenteriae]
 gi|87117451|gb|ABD20017.1| Rnc [Shigella boydii]
 gi|87117454|gb|ABD20019.1| Rnc [Shigella boydii]
 gi|87117457|gb|ABD20021.1| Rnc [Shigella dysenteriae]
 gi|87117460|gb|ABD20023.1| Rnc [Shigella dysenteriae]
 gi|87117466|gb|ABD20027.1| Rnc [Shigella dysenteriae]
 gi|87117469|gb|ABD20029.1| Rnc [Shigella boydii]
 gi|87117472|gb|ABD20031.1| Rnc [Shigella boydii]
 gi|87117475|gb|ABD20033.1| Rnc [Shigella boydii]
 gi|87117478|gb|ABD20035.1| Rnc [Shigella dysenteriae]
 gi|87117481|gb|ABD20037.1| Rnc [Shigella flexneri]
 gi|87117484|gb|ABD20039.1| Rnc [Shigella dysenteriae]
 gi|87117487|gb|ABD20041.1| Rnc [Shigella boydii]
 gi|87117490|gb|ABD20043.1| Rnc [Shigella boydii]
 gi|87117493|gb|ABD20045.1| Rnc [Shigella boydii]
 gi|87117499|gb|ABD20049.1| Rnc [Shigella dysenteriae]
 gi|87117502|gb|ABD20051.1| Rnc [Shigella boydii]
 gi|87117505|gb|ABD20053.1| Rnc [Shigella dysenteriae]
 gi|87117508|gb|ABD20055.1| Rnc [Shigella boydii]
 gi|87117511|gb|ABD20057.1| Rnc [Shigella boydii]
 gi|87117517|gb|ABD20061.1| Rnc [Shigella boydii]
 gi|87117523|gb|ABD20065.1| Rnc [Shigella boydii]
 gi|87117526|gb|ABD20067.1| Rnc [Shigella flexneri]
 gi|87117529|gb|ABD20069.1| Rnc [Shigella flexneri]
 gi|87117532|gb|ABD20071.1| Rnc [Shigella boydii]
 gi|87117535|gb|ABD20073.1| Rnc [Escherichia coli]
 gi|87117538|gb|ABD20075.1| Rnc [Escherichia coli]
 gi|87117541|gb|ABD20077.1| Rnc [Escherichia coli]
          Length = 178

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 3/162 (1%)

Query: 52  GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111
             +I+  L++ F    EG++S    +LV   T +++ARE +L   +R+     K      
Sbjct: 1   SYVIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRR 60

Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKF 169
            SI AD VE+LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   + 
Sbjct: 61  ESILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRH 120

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              P Y V    G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 121 LPLPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 162


>gi|87117520|gb|ABD20063.1| Rnc [Shigella boydii]
          Length = 178

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 49/162 (30%), Positives = 80/162 (49%), Gaps = 3/162 (1%)

Query: 52  GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111
             +I+ +L++ F    EG++S    +LV   T +++ARE +L   +R+     K      
Sbjct: 1   SYVIANVLYHRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRR 60

Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKF 169
            SI AD VE+LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   + 
Sbjct: 61  ESILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRH 120

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              P Y V    G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 121 LPLPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 162


>gi|256842428|ref|ZP_05547931.1| ribonuclease III [Parabacteroides sp. D13]
 gi|262384660|ref|ZP_06077793.1| ribonuclease III [Bacteroides sp. 2_1_33B]
 gi|256736035|gb|EEU49366.1| ribonuclease III [Parabacteroides sp. D13]
 gi|262293641|gb|EEY81576.1| ribonuclease III [Bacteroides sp. 2_1_33B]
          Length = 280

 Score =  183 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 59/226 (26%), Positives = 111/226 (49%), Gaps = 13/226 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y +L K +G+   N  + E+AL H S S    +    + ERLEFLGD IL   ++ +++ 
Sbjct: 24  YLSLSKILGFYPDNLQIYEQALLHKSSSVETGDGKWLNNERLEFLGDGILDAAVADIVYK 83

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + + +EG L+   + +V  ET ++VA +L L   +  S+     + S    +  + +E+
Sbjct: 84  RYPNKREGFLTNTRSKIVQRETMNKVAVQLGLDQMVVYSTK----INSHNNHMYGNALEA 139

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVT 178
           LI A+YLD G +V   F+     ++ +      R   + K+ L EW+     ++  + + 
Sbjct: 140 LIGAIYLDQGYDVCYKFIRDVMIEKYIDVDMLVRKEINFKSNLIEWSQKN-KISISFDLI 198

Query: 179 FR-SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              +  D +P F   +++ G     G+  SK+ ++Q A+   +KR 
Sbjct: 199 ESFTDHDGNPVFQSAIKLLGEQIGIGIGYSKKESQQAASKMAVKRL 244


>gi|299142079|ref|ZP_07035213.1| ribonuclease 3 [Prevotella oris C735]
 gi|298576541|gb|EFI48413.1| ribonuclease 3 [Prevotella oris C735]
          Length = 363

 Score =  183 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 61/227 (26%), Positives = 110/227 (48%), Gaps = 15/227 (6%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61
           YS+L   +G+   N S  + AL H SI    +     + ERLEFLGD IL  ++  +++ 
Sbjct: 20  YSSLYAILGFYPRNISYYKLALMHKSIMRRNAKGKPVNNERLEFLGDAILDAIVGDIVYQ 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF   +EG L+   + LV  +T +++A EL ++  I +S+          + +  +  E+
Sbjct: 80  HFPGKREGFLTNTRSKLVQRDTLNKLANELGISKLI-LSNGRSSS---HNSYMGGNAFEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178
           L+ A+YLD G +    F+      + +   K      + K++L EW+     V  ++++ 
Sbjct: 136 LVGAVYLDRGYDACMNFMQHRILTQMINIDKVAYKEVNFKSKLIEWSQKN-RVKLDFEIL 194

Query: 179 FRSGPDHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              G D +  P F   V I G+    G+  SK+ ++Q+A    L++ 
Sbjct: 195 -EQGKDKNGSPIFNYKVVIEGIDGCDGVGYSKKESQQLACKLTLEQL 240


>gi|332664519|ref|YP_004447307.1| ribonuclease 3 [Haliscomenobacter hydrossis DSM 1100]
 gi|332333333|gb|AEE50434.1| Ribonuclease 3 [Haliscomenobacter hydrossis DSM 1100]
          Length = 248

 Score =  183 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 114/227 (50%), Gaps = 14/227 (6%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQE-----SYERLEFLGDRILGLLISTLLFNH 62
            L+  +GY  AN  + + A +H S S+S  +     + ERLE+LGD +LG +++  LF  
Sbjct: 21  KLKPLLGYTPANLGIFKLAFSHKSTSNSGDKAYPMQNNERLEYLGDAVLGTIVAEYLFKK 80

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +  + EG L+   + LV  ++ +++  +++L   + +S     +      S+  + VE+L
Sbjct: 81  YPDSNEGFLTKMRSKLVKRKSLNRIGDKMELE--LLLS---EYNTTRLSRSMLGNAVEAL 135

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTF 179
           + A+YLD G      FV  +  ++ +   +  R   + K++L EW   K G    YK+  
Sbjct: 136 VGAVYLDRGYASTKIFVINHMLRKYVNIHELERLDDNYKSQLLEWCQ-KSGKNVTYKLLA 194

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           R   +   RF V V I+    A   D +K++AEQ+A+ + +   GI 
Sbjct: 195 RYKFEKRDRFKVAVMINNKRVATADDFNKKSAEQMASEKAMIALGIL 241


>gi|87117463|gb|ABD20025.1| Rnc [Shigella dysenteriae]
          Length = 178

 Score =  183 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 3/162 (1%)

Query: 52  GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111
             +I+  L++ F    EG++S    +LV   T +++ARE +L   +R+     K      
Sbjct: 1   SYVIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRR 60

Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKF 169
            SI AD VE+LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   + 
Sbjct: 61  ESILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRH 120

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              P Y V    G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 121 LPLPTYMVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 162


>gi|312131056|ref|YP_003998396.1| rnase iii [Leadbetterella byssophila DSM 17132]
 gi|311907602|gb|ADQ18043.1| RNAse III [Leadbetterella byssophila DSM 17132]
          Length = 242

 Score =  183 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 62/222 (27%), Positives = 99/222 (44%), Gaps = 17/222 (7%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHS-----YQESYERLEFLGDRILGLLISTLLFNH 62
            +E  +G   +N  L + A  H+S S       ++ES ERLEFLGD +LGL++   LF  
Sbjct: 19  AIELIVGAKPSNPLLYQLAFRHTSASKESMFKGFRESNERLEFLGDAVLGLIVGEYLFKK 78

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF--MTSIQADVVE 120
           +    EG L+   + +V+ E+ + V R L L + I        D       TS+  D +E
Sbjct: 79  YPFKNEGFLTEIRSRIVNRESLNNVGRRLGLENLI------ESDGARNFQRTSLLGDAME 132

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKV 177
           +LI A+YLD G +    FV            +      + K+ +  WA ++     E+ +
Sbjct: 133 ALIGAIYLDKGYKFTQKFVVSKLLSNHFDLDEVISNNTNYKSSILSWAQSEGKK-VEFVI 191

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
               G +H   F   V + G   + G   +K+ AEQ A+   
Sbjct: 192 VEEKGKNHSREFVAQVLVDGEIISNGNGWNKKKAEQDASRRA 233


>gi|150009420|ref|YP_001304163.1| ribonuclease III [Parabacteroides distasonis ATCC 8503]
 gi|298377793|ref|ZP_06987743.1| ribonuclease III [Bacteroides sp. 3_1_19]
 gi|149937844|gb|ABR44541.1| ribonuclease III [Parabacteroides distasonis ATCC 8503]
 gi|298265239|gb|EFI06902.1| ribonuclease III [Bacteroides sp. 3_1_19]
          Length = 280

 Score =  183 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 59/226 (26%), Positives = 111/226 (49%), Gaps = 13/226 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y +L K +G+   N  + E+AL H S S    +    + ERLEFLGD IL   ++ +++ 
Sbjct: 24  YLSLSKILGFYPDNLQIYEQALLHKSSSVETGDGKWLNNERLEFLGDGILDAAVADIVYK 83

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + + +EG L+   + +V  ET ++VA +L L   +  S+     + S    +  + +E+
Sbjct: 84  RYPNKREGFLTNTRSKIVQRETMNKVAVQLGLDQMVVYSTK----INSHNNHMYGNALEA 139

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVT 178
           LI A+YLD G +V   F+     ++ +      R   + K+ L EW+     ++  + + 
Sbjct: 140 LIGAIYLDQGYDVCYKFIRDVMIEKYIDVDMLVRKEINFKSNLIEWSQKN-KISISFDLI 198

Query: 179 FR-SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              +  D +P F   +++ G     G+  SK+ ++Q A+   +KR 
Sbjct: 199 ESFTDHDGNPVFQSAIKLLGEQIGIGIGYSKKESQQAASKMAVKRL 244


>gi|254233016|ref|ZP_04926343.1| ribonuclease III rnc (RNase III) [Mycobacterium tuberculosis C]
 gi|124602075|gb|EAY61085.1| ribonuclease III rnc (RNase III) [Mycobacterium tuberculosis C]
          Length = 198

 Score =  183 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 57/171 (33%), Positives = 83/171 (48%), Gaps = 6/171 (3%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRV 99
           +EFLGD +LGL I+  LF+      EG+L+    S+V+ +  + VAR L    L   + +
Sbjct: 1   MEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLL 60

Query: 100 SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDA 157
                    +  +SI AD +ESL+ A+YL  G+E A   + + +      +       D 
Sbjct: 61  GRGEANTGGADKSSILADGMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDW 120

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
           KT LQE   A+    P Y VT  +GPDHD  FT VV +       G+  SK
Sbjct: 121 KTSLQELTAARGLGAPSYLVTS-TGPDHDKEFTAVVVVMDSEYGSGVGRSK 170


>gi|319900438|ref|YP_004160166.1| RNAse III [Bacteroides helcogenes P 36-108]
 gi|319415469|gb|ADV42580.1| RNAse III [Bacteroides helcogenes P 36-108]
          Length = 290

 Score =  183 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 56/226 (24%), Positives = 112/226 (49%), Gaps = 13/226 (5%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLF 60
            Y    + +G+   N  + ++AL H SIS   ++    + ERLEFLGD IL  ++  +++
Sbjct: 19  SYLCFYEILGFFPRNIQIYQQALLHKSISIRSEKGRPLNNERLEFLGDAILDAIVGDIVY 78

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            HF+  +EG L+   + +V  ET +++A E+ L   ++          S  + +  +  E
Sbjct: 79  KHFEGRREGFLTNTRSKIVQRETLNKLAVEIGLDKLVKY----SSRSSSHNSYMYGNAFE 134

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKV 177
           + + A+YLD G +    F+++   +  +   K  R   + K++L EW+     +   +++
Sbjct: 135 AFVGAIYLDQGYDRCKWFMEEKIFKHYIDLDKMSRKEVNFKSKLIEWSQKN-KMEVSFEL 193

Query: 178 TFR-SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             +    D++P F   + I G++   G   SK+ ++Q AA   L++
Sbjct: 194 IKQLLDKDYNPMFHTEIRIEGVSAGTGTGYSKKESQQNAAQIALRK 239


>gi|212692274|ref|ZP_03300402.1| hypothetical protein BACDOR_01770 [Bacteroides dorei DSM 17855]
 gi|237726085|ref|ZP_04556566.1| ribonuclease 3 [Bacteroides sp. D4]
 gi|212665151|gb|EEB25723.1| hypothetical protein BACDOR_01770 [Bacteroides dorei DSM 17855]
 gi|229435893|gb|EEO45970.1| ribonuclease 3 [Bacteroides dorei 5_1_36/D4]
          Length = 308

 Score =  183 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 58/227 (25%), Positives = 113/227 (49%), Gaps = 13/227 (5%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59
             Y    K +G+   + S+ E+AL H S+S   ++    + ERLEFLGD IL  +++ ++
Sbjct: 18  ESYFRFYKMLGFYPKDISIYEQALLHKSLSVKSEKGRLLNNERLEFLGDAILDAVVADIV 77

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  F+  +EG L+   + +V  ET +++A E+ L   I+ ++       S  + +  +  
Sbjct: 78  YKRFEGKREGFLTNTRSKIVQRETLNRLAIEIGLDKLIKYTA----RQSSHNSYMCGNAF 133

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYK 176
           E+L+ A+YLD G      F++       +   K  R   + K++L EW+         ++
Sbjct: 134 EALVGAIYLDRGYRACKYFMEHRIIGSYINLEKISRKEVNFKSKLIEWSQKN-RFEVTFE 192

Query: 177 VTFRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +  +S    ++P F   V + G++  +G   SK+ ++Q+AA   L +
Sbjct: 193 LITQSHDQGYNPTFESEVLVEGISGGKGTGYSKKESQQMAARVALGK 239


>gi|265752863|ref|ZP_06088432.1| ribonuclease 3 [Bacteroides sp. 3_1_33FAA]
 gi|263236049|gb|EEZ21544.1| ribonuclease 3 [Bacteroides sp. 3_1_33FAA]
          Length = 308

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 58/227 (25%), Positives = 113/227 (49%), Gaps = 13/227 (5%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLL 59
             Y    K +G+   + S+ E+AL H S+S   ++    + ERLEFLGD IL  +++ ++
Sbjct: 18  ESYFRFYKMLGFYPKDISIYEQALLHKSLSVKSEKGRLLNNERLEFLGDAILDAVVADIV 77

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  F+  +EG L+   + +V  ET +++A E+ L   I+ ++       S  + +  +  
Sbjct: 78  YKRFEGKREGFLTNTRSKIVQRETLNRLAIEIGLDKLIKYTA----RQSSHNSYMCGNAF 133

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYK 176
           E+L+ A+YLD G      F++       +   K  R   + K++L EW+         ++
Sbjct: 134 EALVGAIYLDRGYRACKYFMEHRIIGSYINLEKISRKEVNFKSKLIEWSQKN-RFEVTFE 192

Query: 177 VTFRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +  +S    ++P F   V + G++  +G   SK+ ++Q+AA   L +
Sbjct: 193 LITQSHDQGYNPTFESEVLVEGISGGKGTGYSKKESQQMAARVALGK 239


>gi|78183763|ref|YP_376197.1| ribonuclease III [Synechococcus sp. CC9902]
 gi|78168057|gb|ABB25154.1| RNAse III [Synechococcus sp. CC9902]
          Length = 249

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 110/228 (48%), Gaps = 12/228 (5%)

Query: 5   RYSTLEKRIGYAFAN----RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           +   L + IG    N     SL+++AL H S   S  +++ERLEFLGD +L L  +  + 
Sbjct: 8   KLLELLQTIGLQELNSSKLLSLVDEALIHVSAGRS--KNFERLEFLGDAVLRLAATEFID 65

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             + +   G  S     LVS    +Q+  +L L SF+ +      D  +  T +QAD  E
Sbjct: 66  QQYPNLPVGRCSSLRAQLVSDRWLAQLGEQLQLESFLVLGPKALGDAAAQAT-LQADATE 124

Query: 121 SLIAALYLDGG--IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           +LI A+Y   G  +E    ++  +W+Q    + +     + KT LQEW+ A+    P Y 
Sbjct: 125 ALIGAIYSGSGNNLEPIHHWLTPHWQQTTADVLARPHLFNGKTMLQEWSQAEGLGLPNYT 184

Query: 177 VTFRSGPDHDP-RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            T +S    DP RF   VE+     A G   S++ AEQ AA E ++R 
Sbjct: 185 TTEQSSRHGDPERFKSRVEVGSRLSANGFGRSRKEAEQNAATEAVQRL 232


>gi|323451297|gb|EGB07175.1| hypothetical protein AURANDRAFT_6264 [Aureococcus anophagefferens]
          Length = 227

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 75/201 (37%), Positives = 103/201 (51%), Gaps = 7/201 (3%)

Query: 24  EKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           E ALTH S  +H+    +ERLEFLGDR+LGL+++  L +H+    EGE  +R + LV  E
Sbjct: 19  EAALTHPSTGAHASTGRFERLEFLGDRVLGLVVAEWLHDHYPDEDEGESQIRHSGLVRTE 78

Query: 83  TCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141
               VA  L L   +R  S  L     +   ++ AD +E+++ A+++DGG   +   V K
Sbjct: 79  ALVAVAGGLRLDGHVRAKSHGLWVSRSNSNDTMVADALEAIVGAVFVDGGYAASKRVVLK 138

Query: 142 YWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL- 198
            W     K+      RD KT LQE A       P Y+   ++GPDHDP  TV        
Sbjct: 139 AWAPLLAKADATPPLRDPKTRLQEHAQKHKRPLPTYETIRKTGPDHDPTITVQAHYGDRT 198

Query: 199 --APAQGMDCSKRAAEQVAAA 217
             A A+GM  SKRAA   AA 
Sbjct: 199 ANATAKGMHPSKRAASMAAAK 219


>gi|291618446|ref|YP_003521188.1| Rnc [Pantoea ananatis LMG 20103]
 gi|291153476|gb|ADD78060.1| Rnc [Pantoea ananatis LMG 20103]
          Length = 176

 Score =  182 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 49/160 (30%), Positives = 80/160 (50%), Gaps = 3/160 (1%)

Query: 54  LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
           +I+  L++ F    EG++S    +LV   T +++ARE DL   +R+     K       S
Sbjct: 1   MIANALYHRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRES 60

Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGV 171
           I AD VE+LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +   
Sbjct: 61  ILADTVEALIGGVFLDSDIQTVEKLILDWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLP 120

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
            P Y V    G  HD  FT+  ++SG+  P  G+  S+R 
Sbjct: 121 LPSYLVVQVRGEAHDQEFTIHCQVSGMAEPVVGVGSSRRK 160


>gi|125584735|gb|EAZ25399.1| hypothetical protein OsJ_09217 [Oryza sativa Japonica Group]
          Length = 1883

 Score =  182 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 61/244 (25%), Positives = 102/244 (41%), Gaps = 30/244 (12%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            M ++ + TL+  +G  F N+ LL +A+TH+S   S    Y+RLEF+GD +L  LI+  LF
Sbjct: 1533 MRSINFDTLKGVLGIEFQNKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 1592

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM--------- 111
              +     G L+    + V+ E  ++VA +  L   +R  S   +               
Sbjct: 1593 FTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQIREFVKDVQEELL 1652

Query: 112  --------------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRD 156
                            +  D+VES+  A++LD G + +  + V +      +        
Sbjct: 1653 KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGYDTSVVWKVFQPLLHPMVTPETLPMH 1712

Query: 157  AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
               ELQE    +     EYK   R+G       TV V + G+      +  K+ A+++AA
Sbjct: 1713 PVRELQERCQQQAEGL-EYKA-SRAGN----IATVEVFVDGVQIGVAQNPQKKMAQKLAA 1766

Query: 217  AEVL 220
               L
Sbjct: 1767 RNAL 1770



 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 63/191 (32%), Gaps = 59/191 (30%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             L+  I Y      +L +ALT +S   +    YER E LGD  L  ++S  LF  +    
Sbjct: 1323 QLKDIIDYPVPATKIL-EALTAASCQETL--CYERAELLGDAYLKWVVSRFLFLKYPQKH 1379

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------------------- 101
            EG+L+     +VS     Q A    L S+I+                             
Sbjct: 1380 EGQLTRMRQQMVSNMVLYQYALNKTLQSYIQADRFAPSRWAAPGVLPVFDEESREYEPSI 1439

Query: 102  -DLRKDVCS----------------------------FMTSIQADVVESLIAALYLDGGI 132
             D     C                               +   ADVVE+LI   Y+ GG 
Sbjct: 1440 FDEESTGCELQKESYDDYADNMQEDGEIEGDSSCYRVLSSKTLADVVEALIGVYYVAGG- 1498

Query: 133  EVAGTFVDKYW 143
            ++A   + K+ 
Sbjct: 1499 KIAANHLMKWI 1509



 Score = 45.8 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 6/67 (8%)

Query: 161  LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGMD---CSKRAAEQV 214
            L +    +    P+Y+     GP H  RF   V ++        + +     S + A+  
Sbjct: 1802 LNDICLRRQWPMPQYRCVNEGGPAHAKRFVYSVRVNTSDRGWTDECIGEPMPSVKKAKDS 1861

Query: 215  AAAEVLK 221
            AA  +L+
Sbjct: 1862 AAVLLLE 1868


>gi|75330224|sp|Q8LMR2|DCL1_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 1; AltName:
            Full=Dicer-like protein 1; Short=OsDCL1
 gi|21426125|gb|AAM52322.1|AC105363_11 Putative CAF protein [Oryza sativa Japonica Group]
 gi|108705906|gb|ABF93701.1| DEAD/DEAH box helicase carpel factory, putative, expressed [Oryza
            sativa Japonica Group]
          Length = 1883

 Score =  182 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 61/244 (25%), Positives = 102/244 (41%), Gaps = 30/244 (12%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            M ++ + TL+  +G  F N+ LL +A+TH+S   S    Y+RLEF+GD +L  LI+  LF
Sbjct: 1533 MRSINFDTLKGVLGIEFQNKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 1592

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM--------- 111
              +     G L+    + V+ E  ++VA +  L   +R  S   +               
Sbjct: 1593 FTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQIREFVKDVQEELL 1652

Query: 112  --------------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRD 156
                            +  D+VES+  A++LD G + +  + V +      +        
Sbjct: 1653 KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGYDTSVVWKVFQPLLHPMVTPETLPMH 1712

Query: 157  AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
               ELQE    +     EYK   R+G       TV V + G+      +  K+ A+++AA
Sbjct: 1713 PVRELQERCQQQAEGL-EYKA-SRAGN----IATVEVFVDGVQIGVAQNPQKKMAQKLAA 1766

Query: 217  AEVL 220
               L
Sbjct: 1767 RNAL 1770



 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 63/191 (32%), Gaps = 59/191 (30%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             L+  I Y      +L +ALT +S   +    YER E LGD  L  ++S  LF  +    
Sbjct: 1323 QLKDIIDYPVPATKIL-EALTAASCQETL--CYERAELLGDAYLKWVVSRFLFLKYPQKH 1379

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------------------- 101
            EG+L+     +VS     Q A    L S+I+                             
Sbjct: 1380 EGQLTRMRQQMVSNMVLYQYALNKTLQSYIQADRFAPSRWAAPGVLPVFDEESREYEPSI 1439

Query: 102  -DLRKDVCS----------------------------FMTSIQADVVESLIAALYLDGGI 132
             D     C                               +   ADVVE+LI   Y+ GG 
Sbjct: 1440 FDEESTGCELQKESYDDYADNMQEDGEIEGDSSCYRVLSSKTLADVVEALIGVYYVAGG- 1498

Query: 133  EVAGTFVDKYW 143
            ++A   + K+ 
Sbjct: 1499 KIAANHLMKWI 1509



 Score = 45.8 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 6/67 (8%)

Query: 161  LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGMD---CSKRAAEQV 214
            L +    +    P+Y+     GP H  RF   V ++        + +     S + A+  
Sbjct: 1802 LNDICLRRQWPMPQYRCVNEGGPAHAKRFVYSVRVNTSDRGWTDECIGEPMPSVKKAKDS 1861

Query: 215  AAAEVLK 221
            AA  +L+
Sbjct: 1862 AAVLLLE 1868


>gi|225453660|ref|XP_002268369.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1971

 Score =  182 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 68/244 (27%), Positives = 106/244 (43%), Gaps = 30/244 (12%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            + ++ + TLE  +   F NR LL +A+TH+S   S    Y+RLEF+GD +L  LI+  LF
Sbjct: 1627 LRSVNFDTLEGALNIKFNNRGLLIEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 1686

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-LRKDVCSFM-------- 111
              +     G L+    + V+ E  ++VA +  L   +R  S  L K +  F+        
Sbjct: 1687 FTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHIHLRHGSSALEKQIRDFVKEVQDELS 1746

Query: 112  --------------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRD 156
                            +  D+VES+  A++LD G + A  + V +      +        
Sbjct: 1747 KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTAVVWKVFQPLLHPMVTPETLPMH 1806

Query: 157  AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
               ELQE    +     EYK T RSG       TV V I G+      +  K+ A+++AA
Sbjct: 1807 PVRELQERCQQQAEGL-EYKAT-RSGN----LATVEVFIDGVQIGIAQNPQKKMAQKLAA 1860

Query: 217  AEVL 220
               L
Sbjct: 1861 RNAL 1864



 Score = 73.2 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 63/191 (32%), Gaps = 61/191 (31%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             L+  I Y      +L +ALT +S   ++   YER E LGD  L  ++S  LF  +    
Sbjct: 1413 QLKDVINYPVPAAKIL-EALTAASCQETF--CYERAELLGDAYLKWVVSRFLFLKYPQKH 1469

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFI------------------------------ 97
            EG+L+     +VS     Q A    L S+I                              
Sbjct: 1470 EGQLTRMRQQMVSNMVLYQSALCKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKETESSL 1529

Query: 98   ---------------RVSSD----------LRKDVCSFM---TSIQADVVESLIAALYLD 129
                           R              L  D  S+    +   ADVVE+LI   Y++
Sbjct: 1530 FDHERPFSETAPGNDRHGDGYDDDEMEDGELESDSSSYRVLSSKTLADVVEALIGVYYVE 1589

Query: 130  GGIEVAGTFVD 140
            GG   A   + 
Sbjct: 1590 GGKNAANHLMK 1600



 Score = 49.7 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 6/72 (8%)

Query: 161  LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGMD---CSKRAAEQV 214
            L +    +    P Y+     GP H  RFT  V ++        + +     S + A+  
Sbjct: 1898 LNDICLRRNWPMPVYRCVNEGGPAHAKRFTFAVRVNTNDKGWTDECIGEPMPSVKKAKDS 1957

Query: 215  AAAEVLKREGIW 226
            AA  +L+    W
Sbjct: 1958 AAVLLLELLNKW 1969


>gi|125542181|gb|EAY88320.1| hypothetical protein OsI_09779 [Oryza sativa Indica Group]
          Length = 1883

 Score =  182 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 61/244 (25%), Positives = 102/244 (41%), Gaps = 30/244 (12%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            M ++ + TL+  +G  F N+ LL +A+TH+S   S    Y+RLEF+GD +L  LI+  LF
Sbjct: 1533 MRSINFDTLKGVLGIEFQNKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 1592

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM--------- 111
              +     G L+    + V+ E  ++VA +  L   +R  S   +               
Sbjct: 1593 FTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQIREFVKDVQEELL 1652

Query: 112  --------------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRD 156
                            +  D+VES+  A++LD G + +  + V +      +        
Sbjct: 1653 KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGYDTSVVWKVFQPLLHPMVTPETLPMH 1712

Query: 157  AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
               ELQE    +     EYK   R+G       TV V + G+      +  K+ A+++AA
Sbjct: 1713 PVRELQERCQQQAEGL-EYKA-SRAGN----IATVEVFVDGVQIGVAQNPQKKMAQKLAA 1766

Query: 217  AEVL 220
               L
Sbjct: 1767 RNAL 1770



 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 64/191 (33%), Gaps = 59/191 (30%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             L+  I Y      +L +ALT +S   ++   YER E LGD  L  ++S  LF  +    
Sbjct: 1323 QLKDIIDYPVPATKIL-EALTAASCQETF--CYERAELLGDAYLKWVVSRFLFLKYPQKH 1379

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------------------- 101
            EG+L+     +VS     Q A    L S+I+                             
Sbjct: 1380 EGQLTRMRQQMVSNMVLYQYALNKTLQSYIQADRFAPSRWAAPGVLPVFDEESREYEPSI 1439

Query: 102  -DLRKDVCS----------------------------FMTSIQADVVESLIAALYLDGGI 132
             D     C                               +   ADVVE+LI   Y+ GG 
Sbjct: 1440 FDEESTGCELQKESYDDYADNMQEDGEIEGDSSCYRVLSSKTLADVVEALIGVYYVAGG- 1498

Query: 133  EVAGTFVDKYW 143
            ++A   + K+ 
Sbjct: 1499 KIAANHLMKWI 1509



 Score = 45.8 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 6/67 (8%)

Query: 161  LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGMD---CSKRAAEQV 214
            L +    +    P+Y+     GP H  RF   V ++        + +     S + A+  
Sbjct: 1802 LNDICLRRQWPMPQYRCVNEGGPAHAKRFVYSVRVNTSDRGWTDECIGEPMPSVKKAKDS 1861

Query: 215  AAAEVLK 221
            AA  +L+
Sbjct: 1862 AAVLLLE 1868


>gi|87117514|gb|ABD20059.1| Rnc [Shigella boydii]
          Length = 178

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 3/162 (1%)

Query: 52  GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111
             +I+  L++ F    EG++S    +LV   T +++ARE +L   +R+     K      
Sbjct: 1   SYVIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRR 60

Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKF 169
            SI AD VE+LI  ++LD  I      +  +++ R   +  G  ++D KT LQE+   + 
Sbjct: 61  ESILADTVEALIGGVFLDSDIRTVEKLILNWYQTRLDEISPGDKQKDPKTRLQEYLQGRH 120

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
              P Y V    G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 121 LPLPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 162


>gi|281424694|ref|ZP_06255607.1| ribonuclease III [Prevotella oris F0302]
 gi|281401064|gb|EFB31895.1| ribonuclease III [Prevotella oris F0302]
          Length = 363

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 61/227 (26%), Positives = 109/227 (48%), Gaps = 15/227 (6%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61
           YS+L   +G+   N S  + AL H SI    +     + ERLEFLGD IL  ++  +++ 
Sbjct: 20  YSSLYAILGFYPRNISYYKLALMHKSIMRRNAKGKPVNNERLEFLGDAILDAIVGDIVYQ 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF   +EG L+   + LV  +T +++A EL ++  I +S+          + +  +  E+
Sbjct: 80  HFPGKREGFLTNTRSKLVQRDTLNKLANELGISKLI-LSNGRSSS---HNSYMGGNAFEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178
           L+ A+YLD G +    F+      + +   K      + K++L EW+     V   +++ 
Sbjct: 136 LVGAVYLDRGYDACMNFMQHRILTQMINIDKVAYKEVNFKSKLIEWSQKN-RVKLNFEIL 194

Query: 179 FRSGPDHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              G D +  P F   V I G+    G+  SK+ ++Q+A    L++ 
Sbjct: 195 -EQGKDKNGSPIFNYKVVIEGIDGCDGVGYSKKESQQLACKLTLEQL 240


>gi|282858948|ref|ZP_06268088.1| ribonuclease III [Prevotella bivia JCVIHMP010]
 gi|282588330|gb|EFB93495.1| ribonuclease III [Prevotella bivia JCVIHMP010]
          Length = 333

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 103/224 (45%), Gaps = 11/224 (4%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y +L +  G    + S  + AL H S+S   ++    + ERLEFLGD +L  +++ +++ 
Sbjct: 20  YLSLYQITGLIPHDISYYKTALLHKSVSRRNEKGKLVNNERLEFLGDAVLDCVVADIVYE 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F + +EG L+   + LV  ET ++V+ E+ +   ++          +   ++  +  E+
Sbjct: 80  RFPNKREGFLTNTRSKLVKRETLNKVSTEMGIDKMLK----QNGHTVTHNCNVAGNAFEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178
           L+ ALYLD G +    F+        +   K      + K++L EW           +V 
Sbjct: 136 LVGALYLDHGYDACMNFMRNRVFGHLVNVEKMAYREMNYKSKLIEWTQKNKVTVIFDEVN 195

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             +  + +P F   V I  +   +G   +K+ ++Q AA +  +R
Sbjct: 196 TSTDENGNPVFLAQVIIGNVRCEEGKGFTKKESQQNAAKQTYRR 239


>gi|157953758|ref|YP_001498649.1| hypothetical protein AR158_C568R [Paramecium bursaria Chlorella
           virus AR158]
 gi|156068406|gb|ABU44113.1| hypothetical protein AR158_C568R [Paramecium bursaria Chlorella
           virus AR158]
          Length = 268

 Score =  182 bits (463), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 61/222 (27%), Positives = 98/222 (44%), Gaps = 7/222 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFD 64
           + +E  IG    +    + A    S +     + +YER+EF+GD +LG +I+  L+++F 
Sbjct: 45  NDIEYLIGMPIIDFEYYKTAF---SYNAIVEGESTYERMEFVGDSVLGFIIARYLYDNFP 101

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG LS      VS +  S +A  + L +F+ +         +    I  DV E+L+ 
Sbjct: 102 GKDEGFLSRLRTKFVSGKFLSSIALRMGLHNFVIMHQKGLYRGWNTNPRILEDVFEALMG 161

Query: 125 ALYLDGGIEVAGT-FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           A+Y D GI  A   F+    K   + +     + K  L +         PE+   F  G 
Sbjct: 162 AIYFDLGINAAKQFFMSTLVKYADIHNLMIDTNYKDRLLKHTRKIELQRPEFVSVFEKGG 221

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
             +P F V V I+G   + G   S++ AEQ A+   L   GI
Sbjct: 222 A-NPSFVVDVVINGQKISTGTGKSRKDAEQNASKLALYSMGI 262


>gi|157952932|ref|YP_001497824.1| hypothetical protein NY2A_B628R [Paramecium bursaria Chlorella
           virus NY2A]
 gi|155123159|gb|ABT15027.1| hypothetical protein NY2A_B628R [Paramecium bursaria Chlorella
           virus NY2A]
          Length = 268

 Score =  182 bits (463), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 61/222 (27%), Positives = 98/222 (44%), Gaps = 7/222 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFD 64
           + +E  IG    +    + A    S +     + +YER+EF+GD +LG +I+  L+++F 
Sbjct: 45  NDIEYLIGMPIIDFEYYKTAF---SYNAIVEGESTYERMEFVGDSVLGFIIARYLYDNFP 101

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG LS      VS +  S +A  + L +F+ +         +    I  DV E+L+ 
Sbjct: 102 GKDEGFLSRLRTKFVSGKFLSSIALRMGLHNFVIMHQKGLYRGWNTNPRILEDVFEALMG 161

Query: 125 ALYLDGGIEVAGT-FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           A+Y D GI  A   F+    K   + +     + K  L +         PE+   F  G 
Sbjct: 162 AIYFDLGINAAKQFFMSTLVKYADIHNLMIDTNYKDRLLKHTRKIELQRPEFVSVFEKGG 221

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
             +P F V V I+G   + G   S++ AEQ A+   L   GI
Sbjct: 222 A-NPSFVVDVVINGQKISTGTGKSRKDAEQNASKLALYSMGI 262


>gi|313157061|gb|EFR56491.1| ribonuclease III [Alistipes sp. HGB5]
          Length = 232

 Score =  182 bits (463), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 61/215 (28%), Positives = 93/215 (43%), Gaps = 21/215 (9%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           G+   N  L + AL H S S   ++    + ERLEFLGD ++  + S  LF  +    EG
Sbjct: 3   GFIPNNIELYKLALIHKSASLVLEDGRAINNERLEFLGDAVIEAVTSDYLFIEYPDRDEG 62

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
            L+   + +VS ++ + +A  + L   + +S+            I  D  E++I A+YLD
Sbjct: 63  FLTQLRSKIVSRQSLNVLAVNIGLDRHV-ISNG---STSVTQKHIYGDAFEAMIGAVYLD 118

Query: 130 GGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVTFRSGPD-- 184
            G E     +      R L   +      D K+ L EW           K+ FR+G D  
Sbjct: 119 QGYEFVNRLLINRIYFRHLSLDELTESETDFKSRLIEWCQKNRH-----KIAFRTGYDKE 173

Query: 185 ---HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
              + P F   V + G+    G   SK+ AEQ AA
Sbjct: 174 YSANHPVFYSTVLVDGMEVGHGSGDSKKEAEQHAA 208


>gi|332830459|gb|EGK03087.1| hypothetical protein HMPREF9455_01337 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 273

 Score =  182 bits (462), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 63/229 (27%), Positives = 110/229 (48%), Gaps = 13/229 (5%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTL 58
              Y +  K +G+   N +L E+AL H S S   ++    + ERLEFLGD IL  +++ +
Sbjct: 17  KEPYVSFCKILGFYPYNITLYEQALLHKSSSIKLKDGRWINNERLEFLGDAILDAIVADI 76

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           +F  F+  KEG L+   + +V  ET +++A E+ +   I+ S+       +  T +  + 
Sbjct: 77  VFKEFEYKKEGFLTNMRSKIVQRETLNRLALEIGIDKLIKTST----RNTTPNTHMYGNA 132

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKS---GKFRRDAKTELQEWAHAKFGVTPEY 175
           +E+ I A+YLD G   A  FV +   Q  L      +   + K+ L EW+  +  ++  +
Sbjct: 133 LEAFIGAIYLDQGYRAAKRFVFERLIQEHLNIESVAELEANYKSRLIEWSQKQ-KISVSF 191

Query: 176 KVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +      +++ P F   V I G     G   SK+ ++Q AA E   + 
Sbjct: 192 DLIDSFVDENNTPIFKTAVIIMGEQAGLGTGYSKKESQQKAAKEAYNKL 240


>gi|198275414|ref|ZP_03207945.1| hypothetical protein BACPLE_01577 [Bacteroides plebeius DSM 17135]
 gi|198271750|gb|EDY96020.1| hypothetical protein BACPLE_01577 [Bacteroides plebeius DSM 17135]
          Length = 339

 Score =  182 bits (462), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 59/228 (25%), Positives = 108/228 (47%), Gaps = 12/228 (5%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTL 58
               Y    K +G+   N  + ++AL H S S   +    + ERLEFLGD IL  +++ +
Sbjct: 16  DKESYLCFYKILGFYPRNIEIYQQALLHKSSSVKAKGRLLNNERLEFLGDAILDAVVADI 75

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           ++  F+  +EG L+   + +V  ET +Q+A ++ L   I+ ++       S  + +  + 
Sbjct: 76  VYKRFEGKREGFLTNTRSKIVQRETLNQIAVKIGLDKLIKYTT----RQSSHNSYMCGNA 131

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEY 175
            E+L+ A+YLD G      F+++   +  L   K  R   + K++L EW         E+
Sbjct: 132 FEALVGAIYLDRGYATCKFFMEERIIKPYLNLEKLSRKEVNFKSKLIEWGQKN-KFLIEF 190

Query: 176 KVTFRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            +  ++     +P F   V +  +   QG   SK+ ++Q AA E L +
Sbjct: 191 NLLEQTVDEQQNPVFETQVVVEQIPAGQGKGYSKKESQQEAAHETLNK 238


>gi|301167246|emb|CBW26828.1| Ribonuclease III (RNase III) [Bacteriovorax marinus SJ]
          Length = 261

 Score =  182 bits (462), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 110/226 (48%), Gaps = 16/226 (7%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLISTLLFNHFD 64
           L++ I + F N +LL +ALTHSS  H      ++SYERLEFLGD +L L+I+ LL   F 
Sbjct: 28  LQRNISHKFKNMALLYEALTHSSFGHECFGDSKKSYERLEFLGDSVLDLIITDLLQEKFP 87

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EG+LS    SLV+  +  ++A  L++   + V     K   +  +SI +DV E+++ 
Sbjct: 88  AMVEGKLSKLRASLVNEVSLKELASSLEIERAVLVGKGELKAQGNLKSSILSDVFEAVLG 147

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF--------RRDAKTELQEWAHAKFGVTPEYK 176
           A+Y D  +EV+        +     SG+           D+K+ LQE   + F   P+Y 
Sbjct: 148 AIYKDSSLEVSKKSFISIIENYEKLSGQIYLDEKRLQEFDSKSRLQEMTMSLFKTLPKYS 207

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
               S    +  F V   +      +G   SK+  EQ  A  ++ +
Sbjct: 208 AKELS----NGNFEVEASVLDKFLEKGEFSSKKKGEQKLAKNIIIK 249


>gi|256077671|ref|XP_002575125.1| ribonuclease III [Schistosoma mansoni]
 gi|238660353|emb|CAZ31358.1| ribonuclease III, putative [Schistosoma mansoni]
          Length = 1531

 Score =  182 bits (462), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 105/228 (46%), Gaps = 11/228 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHS--SISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            +  TLE  +G  F +  +L +A+T      +       +RLEFLGD +L  + +  LF H
Sbjct: 1061 KLCTLEDTLGIKFKHLRVLARAMTIRKTGFNFYTLGDNQRLEFLGDSLLKYVSTDYLFRH 1120

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI--QADVVE 120
            F    EG LS+  NSLV+  T + V  EL L  ++   +       S   ++  +AD++E
Sbjct: 1121 FPRHHEGHLSLLKNSLVNKYTQASVCSELGLEHYVIHRNKNDNCNNSQNQNVKYRADLLE 1180

Query: 121  SLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAH--AKFGVTPE-- 174
            + I AL++D  +     F    +  R ++    +   DAK++LQ+           PE  
Sbjct: 1181 AFIGALFVDKDLAWVERFCQICFWPRLVEFILKQEWNDAKSKLQQCCLTFRSLNEDPEIA 1240

Query: 175  -YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             YKV   SGP +   + V V   G   A G   S + A+  AA + L+
Sbjct: 1241 HYKVLEHSGPTNQRVYRVGVYFRGQRLATGEGRSVQQAQMEAAKKALE 1288



 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 71/190 (37%), Gaps = 56/190 (29%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYE-------------------RLE- 44
               +LE R+GY F ++SLL ++LTH S   +   + +                   +LE 
Sbjct: 828  SLESLENRLGYTFNDKSLLHQSLTHPSYRRTNFGTNQDHFQNSLVSCGPRILEYGDKLEL 887

Query: 45   ------------------------------------FLGDRILGLLISTLLFNHFDSAKE 68
                                                FLGD ++ ++ S  LF  F    E
Sbjct: 888  YKAWRKKGLTKMIQVMSFLPKMHEERSNIYGNERLEFLGDAVVEVISSIHLFFMFPELSE 947

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
            G L     ++V  +  +++A  L +  ++  +  +     S     ++D  E+L+AA+ L
Sbjct: 948  GHLDAYRQAIVQNQHLAELAVRLGIHKYLLYTHSVDFCYDSTFIYARSDAFEALMAAITL 1007

Query: 129  DGGIEVAGTF 138
            D G+++    
Sbjct: 1008 DAGLDIVDRI 1017


>gi|256077669|ref|XP_002575124.1| ribonuclease III [Schistosoma mansoni]
 gi|238660352|emb|CAZ31357.1| ribonuclease III, putative [Schistosoma mansoni]
          Length = 1577

 Score =  182 bits (462), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 105/228 (46%), Gaps = 11/228 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHS--SISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            +  TLE  +G  F +  +L +A+T      +       +RLEFLGD +L  + +  LF H
Sbjct: 1107 KLCTLEDTLGIKFKHLRVLARAMTIRKTGFNFYTLGDNQRLEFLGDSLLKYVSTDYLFRH 1166

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI--QADVVE 120
            F    EG LS+  NSLV+  T + V  EL L  ++   +       S   ++  +AD++E
Sbjct: 1167 FPRHHEGHLSLLKNSLVNKYTQASVCSELGLEHYVIHRNKNDNCNNSQNQNVKYRADLLE 1226

Query: 121  SLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAH--AKFGVTPE-- 174
            + I AL++D  +     F    +  R ++    +   DAK++LQ+           PE  
Sbjct: 1227 AFIGALFVDKDLAWVERFCQICFWPRLVEFILKQEWNDAKSKLQQCCLTFRSLNEDPEIA 1286

Query: 175  -YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             YKV   SGP +   + V V   G   A G   S + A+  AA + L+
Sbjct: 1287 HYKVLEHSGPTNQRVYRVGVYFRGQRLATGEGRSVQQAQMEAAKKALE 1334



 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 71/190 (37%), Gaps = 56/190 (29%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYE-------------------RLE- 44
               +LE R+GY F ++SLL ++LTH S   +   + +                   +LE 
Sbjct: 874  SLESLENRLGYTFNDKSLLHQSLTHPSYRRTNFGTNQDHFQNSLVSCGPRILEYGDKLEL 933

Query: 45   ------------------------------------FLGDRILGLLISTLLFNHFDSAKE 68
                                                FLGD ++ ++ S  LF  F    E
Sbjct: 934  YKAWRKKGLTKMIQVMSFLPKMHEERSNIYGNERLEFLGDAVVEVISSIHLFFMFPELSE 993

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
            G L     ++V  +  +++A  L +  ++  +  +     S     ++D  E+L+AA+ L
Sbjct: 994  GHLDAYRQAIVQNQHLAELAVRLGIHKYLLYTHSVDFCYDSTFIYARSDAFEALMAAITL 1053

Query: 129  DGGIEVAGTF 138
            D G+++    
Sbjct: 1054 DAGLDIVDRI 1063


>gi|323343670|ref|ZP_08083897.1| ribonuclease 3 [Prevotella oralis ATCC 33269]
 gi|323095489|gb|EFZ38063.1| ribonuclease 3 [Prevotella oralis ATCC 33269]
          Length = 361

 Score =  181 bits (461), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 114/226 (50%), Gaps = 13/226 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           YS+L + IG+   N S  + AL H SI     +    + ERLEFLGD IL  ++  ++++
Sbjct: 22  YSSLYRIIGFYPRNISYYKLALMHKSIMRRNSKGKPVNNERLEFLGDAILDAIVGHIVYD 81

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF   +EG L+   + LV  +T +++A+E+ +   I +S+          + +  +  E+
Sbjct: 82  HFPGKREGFLTNTRSKLVQRDTLNKLAQEMGINRLI-LSNGRSSS---HNSYMGGNAFEA 137

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178
           L+ A+YLD G +    F++K    + +   K      + K++L EW+     V  E+K+ 
Sbjct: 138 LVGAIYLDRGYDACMRFMNKRILAQMINIDKVAYKEVNFKSKLIEWSQKN-RVRMEFKML 196

Query: 179 FRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +    +  P F  +V + G+    G   SK+ ++Q+A+   L+R 
Sbjct: 197 DQKKDKNGSPMFQYMVCLEGVDGCSGTGYSKKESQQLASKLTLERL 242


>gi|254431519|ref|ZP_05045222.1| ribonuclease III [Cyanobium sp. PCC 7001]
 gi|197625972|gb|EDY38531.1| ribonuclease III [Cyanobium sp. PCC 7001]
          Length = 245

 Score =  181 bits (461), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 68/211 (32%), Positives = 105/211 (49%), Gaps = 12/211 (5%)

Query: 19  NRSLL---EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
           + +LL   E+ALTH+S     + ++ERLEFLGD +L L  S  L  H      G  S   
Sbjct: 29  DPALLAPIEEALTHTSA--RQRGNHERLEFLGDAVLRLAASEYLHRHHPQLGVGSQSALR 86

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG--IE 133
           + LVS    +++A    L +  R+    R D    + +++A++ E+LI A+Y   G  +E
Sbjct: 87  SQLVSDRWLAELADSCGLETVWRIGPMARGDRA-GIATVRAELCEALIGAVYRCWGDSLE 145

Query: 134 VAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFT 190
              T++  +W+Q  + L +   R + K+ LQEW   +    P Y    RS    DP RF+
Sbjct: 146 PVLTWLTPHWQQASQELLADPDRHNWKSALQEWTQGQGLGLPSYSCEERSTLHADPRRFS 205

Query: 191 VVVEIS-GLAPAQGMDCSKRAAEQVAAAEVL 220
             + +  G     G   S+RAAEQ AA + L
Sbjct: 206 CRLTLGAGNESWDGWGPSRRAAEQDAARQAL 236


>gi|290508248|ref|ZP_06547619.1| ribonuclease III [Klebsiella sp. 1_1_55]
 gi|289777642|gb|EFD85639.1| ribonuclease III [Klebsiella sp. 1_1_55]
          Length = 176

 Score =  181 bits (461), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 3/160 (1%)

Query: 54  LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
           +I+  L++ F    EG++S    +LV   T +++ARE +L   +R+     K       S
Sbjct: 1   MIANALYHRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRES 60

Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGV 171
           I AD VE+LI  ++LD  I+     +  +++ R   +  G  ++D KT LQE+   +   
Sbjct: 61  ILADTVEALIGGVFLDSDIQNVERLILSWYQTRLDEISPGDKQKDPKTRLQEYLQGRHLP 120

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRA 210
            P Y V    G  HD  FT+  ++SGL  P  G   S+R 
Sbjct: 121 LPSYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK 160


>gi|330996547|ref|ZP_08320429.1| ribonuclease III [Paraprevotella xylaniphila YIT 11841]
 gi|329573103|gb|EGG54722.1| ribonuclease III [Paraprevotella xylaniphila YIT 11841]
          Length = 297

 Score =  181 bits (461), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 60/222 (27%), Positives = 105/222 (47%), Gaps = 12/222 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNH 62
           YS+  K +G+   +    E+AL H S S   Q    + ERLEFLGD IL  ++  ++F H
Sbjct: 21  YSSFYKILGFYPHHIQYYEQALHHKSSSIKKQGSWINNERLEFLGDAILDAVVGDIVFRH 80

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG L+   + +V  ET +++A E+ L   I           +  + +  +  E++
Sbjct: 81  FKGKHEGFLTNTRSKIVQRETLNKLAVEIGLDKLII----SSTHSSTHNSYMCGNAFEAM 136

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVTF 179
           + A+YLD G      F+ K    + +   K      + K++L EW   +  V   + +  
Sbjct: 137 VGAIYLDRGYSYCMRFIGKRIMTQLINIDKLAYKEVNFKSKLIEWGQKR-RVEITFDLID 195

Query: 180 RSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           ++   +  P FT  + I G+   +G   SK+ ++Q+AA + L
Sbjct: 196 QAQEGNSTPVFTTQITIEGVTCCKGRGYSKKESQQLAAKDTL 237


>gi|237711457|ref|ZP_04541938.1| ribonuclease III [Bacteroides sp. 9_1_42FAA]
 gi|229454152|gb|EEO59873.1| ribonuclease III [Bacteroides sp. 9_1_42FAA]
          Length = 283

 Score =  181 bits (459), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 56/218 (25%), Positives = 111/218 (50%), Gaps = 13/218 (5%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +G+   + S+ E+AL H S+S   ++    + ERLEFLGD IL  +++ +++  F+  +E
Sbjct: 2   LGFYPKDISIYEQALLHKSLSVKSEKGRLLNNERLEFLGDAILDAVVADIVYKRFEGKRE 61

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G L+   + +V  ET +++A E+ L   I+ ++       S  + +  +  E+L+ A+YL
Sbjct: 62  GFLTNTRSKIVQRETLNRLAIEIGLDKLIKYTA----RQSSHNSYMCGNAFEALVGAIYL 117

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFRS-GPD 184
           D G      F++       +   K  R   + K++L EW+         +++  +S    
Sbjct: 118 DRGYRACKYFMEHRIIGSYINLEKISRKEVNFKSKLIEWSQKN-RFEVTFELITQSHDQG 176

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           ++P F   V + G++  +G   SK+ ++Q+AA   L +
Sbjct: 177 YNPTFESEVLVEGISGGKGTGYSKKESQQMAARVALGK 214


>gi|188518513|ref|ZP_03003985.1| ribonuclease III [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|188997913|gb|EDU67010.1| ribonuclease III [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
          Length = 239

 Score =  181 bits (459), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 61/233 (26%), Positives = 108/233 (46%), Gaps = 14/233 (6%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58
           M   ++    K+      N S+  +ALTH S ++ ++  ++Y+RLEFLGD  +  +IS  
Sbjct: 1   MDNKKFLDFLKQNRIEPKNLSIYLEALTHKSYANEHKLTKNYQRLEFLGDACVEWVISNF 60

Query: 59  LF-------NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111
           +F           S  EGE++   +++V +E  S  A++L L  F+ +   L +D  + M
Sbjct: 61  IFNYKIKDNEKMRSLDEGEMTRARSNMVRSEILSYAAKDLGLTDFLMIGVGLEQDQSARM 120

Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDK-YWKQRALKSGKFRRDAKTELQEWAHAKFG 170
             I  D+ E+ I A+  D GI+     ++K   K        +++D KT  QE A     
Sbjct: 121 EKIYEDIFEAFIGAVAQDQGIKKVSLILEKTLIKYFREGQINYQKDYKTIFQEQAQRINK 180

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               YK+    G   D +  V +  + L    G+  +++ AE +AA   + + 
Sbjct: 181 KPIMYKLVRNEG---DKK-EVHLVWNDLIYGIGIASTRKEAEILAAKNAILKL 229


>gi|189462275|ref|ZP_03011060.1| hypothetical protein BACCOP_02961 [Bacteroides coprocola DSM 17136]
 gi|189431014|gb|EDU99998.1| hypothetical protein BACCOP_02961 [Bacteroides coprocola DSM 17136]
          Length = 314

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 60/229 (26%), Positives = 108/229 (47%), Gaps = 13/229 (5%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIST 57
               Y    K +G+   N  + ++AL H S S    +    + ERLEFLGD IL  +++ 
Sbjct: 16  DKEPYLCFYKMLGFYPRNIEIYQQALLHKSSSIKAGKGRLLNNERLEFLGDAILDAIVAD 75

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
           +++  F+  +EG L+   + +V  ET ++VA E+ L   I+ ++       S  + +  +
Sbjct: 76  IVYKKFEGKREGFLTNTRSKIVQRETLNRVAVEIGLDKLIKYTT----RQSSHNSYMCGN 131

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPE 174
             E+LI A+YLD G      F+++    + L   K  R   + K++L EW+        E
Sbjct: 132 AFEALIGAIYLDRGYRACKKFMEERIINQYLNLEKISRKEVNFKSKLIEWSQKNKFC-VE 190

Query: 175 YKVTFRS-GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           + +  +S   D +P F   + +  +    G   SK+ ++Q AA   L +
Sbjct: 191 FNLIEQSLDSDQNPIFETQITVENIPAGTGKGYSKKESQQEAAHATLTK 239


>gi|294675193|ref|YP_003575809.1| ribonuclease III [Prevotella ruminicola 23]
 gi|294472646|gb|ADE82035.1| ribonuclease III [Prevotella ruminicola 23]
          Length = 342

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 116/226 (51%), Gaps = 13/226 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           +S+L + +G+   N    + AL H SI     +    + ERLEFLGD IL   +  +++ 
Sbjct: 21  FSSLYEILGFYPHNIEYYKMALMHKSIRKRNDKGKPLNNERLEFLGDAILDAAVGYIVYR 80

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           H++  +EG L+   + LVS ET  ++A E+ L++ + +S+       S  + ++ +  E+
Sbjct: 81  HYEGKREGFLTNTRSKLVSRETLGKLATEMRLSN-LLISAG---HSTSHNSYVEGNAFEA 136

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178
           L+ A+YLD G E    F +     + +   K      + K++L EW+     V  EYK+T
Sbjct: 137 LVGAIYLDRGYEACLWFFENQVLGKFIDIDKVAFKEVNFKSKLLEWSQKN-RVRLEYKLT 195

Query: 179 FRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +   ++  P FT +V I G+    G   SK+ A+Q A+ + L+R 
Sbjct: 196 KQKKDENGSPVFTYMVIIEGVNGESGSGYSKKEAQQKASKDTLQRL 241


>gi|317420155|emb|CBN82191.1| Ribonuclease 3 [Dicentrarchus labrax]
          Length = 1569

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 66/211 (31%), Positives = 102/211 (48%), Gaps = 10/211 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + ++ E  IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1359 KLTSFEDSIGVLFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1418

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  F  +++D  K   +  T   AD++ES 
Sbjct: 1419 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQDFA-ITNDKTKRPVALRTKTLADLLESF 1477

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R  +    +   D K++LQ+         K    P Y
Sbjct: 1478 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1537

Query: 176  KVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206
            K     GP H   +TV V   G     G   
Sbjct: 1538 KTLQTVGPSHARTYTVAVYFKGERIGCGKGP 1568



 Score = 79.3 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 44/87 (50%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 1023 NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1082

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIA 124
              +        S +    A+  E+LI 
Sbjct: 1083 LYAHGPDLCRESDLRHAMANCFEALIE 1109


>gi|146298900|ref|YP_001193491.1| ribonuclease III [Flavobacterium johnsoniae UW101]
 gi|146153318|gb|ABQ04172.1| Ribonuclease III [Flavobacterium johnsoniae UW101]
          Length = 246

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 61/223 (27%), Positives = 105/223 (47%), Gaps = 12/223 (5%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLL 59
           + + T++K +G+   N    +KA TH S +      +  +YERLEFLGD +L  +I+  L
Sbjct: 18  IFFDTIQKILGFQPINIEFYKKAFTHRSSNKLDEAGHPINYERLEFLGDAMLSAVIAAHL 77

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           FN   +  EG L+   + +VS E  +++ ++L+L  F+    + +  V  F  +I  ++ 
Sbjct: 78  FNKAPNGDEGYLTKMRSKIVSREHLNELGKDLNLVRFV----ESKVPVQHFGENIHGNIF 133

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYK 176
           ESLI A+YLD G      F+ K      +   +        K+ + EW   +  +   Y 
Sbjct: 134 ESLIGAIYLDKGYSYCERFIQKRVITPYVDIARLEGKVISYKSLVIEWCQKEKRI-FHYD 192

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           +   +G D    F V + I     A+    SK+ AE+ A+   
Sbjct: 193 IFEDNGIDGQRLFGVKLSIDDKVVARARATSKKKAEEKASQRA 235


>gi|13357763|ref|NP_078037.1| ribonuclease III [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|170762098|ref|YP_001752286.1| ribonuclease III [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|171920496|ref|ZP_02931789.1| ribonuclease III [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|171920571|ref|ZP_02931835.1| ribonuclease III [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
 gi|185178791|ref|ZP_02964587.1| ribonuclease III [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|186701949|ref|ZP_02971588.1| ribonuclease III [Ureaplasma parvum serovar 6 str. ATCC 27818]
 gi|188024220|ref|ZP_02996925.1| ribonuclease III [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|188524062|ref|ZP_03004155.1| ribonuclease III [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|195867699|ref|ZP_03079700.1| ribonuclease III [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
 gi|198273484|ref|ZP_03206020.1| ribonuclease III [Ureaplasma urealyticum serovar 4 str. ATCC 27816]
 gi|209554634|ref|YP_002284601.1| ribonuclease III [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
 gi|225550368|ref|ZP_03771317.1| ribonuclease III [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
 gi|225551297|ref|ZP_03772243.1| ribonuclease III [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
 gi|22654077|sp|Q9PQT8|RNC_UREPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|11263399|pir||F82919 ribonuclease III UU205 [imported] - Ureaplasma urealyticum
 gi|6899171|gb|AAF30612.1|AE002120_4 ribonuclease III [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|168827675|gb|ACA32937.1| ribonuclease III [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|171902964|gb|EDT49253.1| ribonuclease III [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|171903275|gb|EDT49564.1| ribonuclease III [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
 gi|184209411|gb|EDU06454.1| ribonuclease III [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|186700702|gb|EDU18984.1| ribonuclease III [Ureaplasma parvum serovar 6 str. ATCC 27818]
 gi|188018874|gb|EDU56914.1| ribonuclease III [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|195659811|gb|EDX53191.1| ribonuclease III [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|195660554|gb|EDX53810.1| ribonuclease III [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
 gi|198250004|gb|EDY74784.1| ribonuclease III [Ureaplasma urealyticum serovar 4 str. ATCC 27816]
 gi|209542135|gb|ACI60364.1| ribonuclease III [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
 gi|225379112|gb|EEH01477.1| ribonuclease III [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
 gi|225379522|gb|EEH01884.1| ribonuclease III [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
          Length = 236

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 61/233 (26%), Positives = 108/233 (46%), Gaps = 14/233 (6%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58
           M   ++    K+      N S+  +ALTH S ++ ++  ++Y+RLEFLGD  +  +IS  
Sbjct: 1   MDNKKFLDFLKQNRIEPKNLSIYLEALTHKSYANEHKLTKNYQRLEFLGDACVEWVISNF 60

Query: 59  LF-------NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111
           +F           S  EGE++   +++V +E  S  A++L L  F+ +   L +D  + M
Sbjct: 61  IFNYKIKDNEKMRSLDEGEMTRARSNMVRSEILSYAAKDLGLTDFLMIGVGLEQDQSARM 120

Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDK-YWKQRALKSGKFRRDAKTELQEWAHAKFG 170
             I  D+ E+ I A+  D GI+     ++K   K        +++D KT  QE A     
Sbjct: 121 EKIYEDIFEAFIGAVAQDQGIKKVSLILEKTLIKYFREGQINYQKDYKTIFQEQAQRINK 180

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               YK+    G   D +  V +  + L    G+  +++ AE +AA   + + 
Sbjct: 181 KPIMYKLVRNEG---DKK-EVHLVWNDLIYGIGIASTRKEAEILAAKNAILKL 229


>gi|168010516|ref|XP_001757950.1| dsRNA-specific nuclease dicer and related ribonuclease
            [Physcomitrella patens subsp. patens]
 gi|162690827|gb|EDQ77192.1| dsRNA-specific nuclease dicer and related ribonuclease
            [Physcomitrella patens subsp. patens]
          Length = 1662

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 102/244 (41%), Gaps = 30/244 (12%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            M ++ + +LE  IG+ F  RSLL +A+TH+S   S    Y+RLEF+GD +L  LI+  LF
Sbjct: 1316 MLSIDFDSLEASIGHKFRKRSLLVEAITHASRPSSGVPCYQRLEFVGDAVLDYLITRFLF 1375

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM--------- 111
              +     G L+    + V+ E  ++VA +      +R  S   +               
Sbjct: 1376 FKYTDLPPGRLTDLRAAAVNNENFARVAVKHSFHLHLRHGSSALETQIRNFVNDIQTELD 1435

Query: 112  --------------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRD 156
                            +  D++ES+  AL+LD  +E    + V +   Q  +        
Sbjct: 1436 KPGVNSFGLGDFKAPKVLGDILESIAGALFLDACLETDHVWKVFEPLLQPMVTPETLPMH 1495

Query: 157  AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
               ELQE    +     EYK   R+G       TV V + G+      +  K+ A+++AA
Sbjct: 1496 PVRELQERCQQQAEAL-EYKA-SRAGN----VATVEVYVDGVQIGSAQNAQKKMAQKLAA 1549

Query: 217  AEVL 220
               L
Sbjct: 1550 RNAL 1553



 Score = 72.4 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 3/91 (3%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             L+ +I Y  A   +L +ALT +S   ++  SYER E LGD  L  ++S  LF  +    
Sbjct: 1095 QLKHQIDYPIAASKVL-EALTAASCQETF--SYERAELLGDAYLKWVVSRRLFLKYPCKH 1151

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIR 98
            EG+L+     +VS     Q A +  L S+I+
Sbjct: 1152 EGQLTRMRQQIVSNSVLYQYALDKGLQSYIQ 1182



 Score = 41.6 bits (97), Expect = 0.087,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 15/35 (42%)

Query: 161  LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
            L +    +    P+Y+     GP H  +FT  V +
Sbjct: 1591 LNDLCLKRQWPMPQYRCVLEGGPAHAKKFTFSVRV 1625


>gi|311747672|ref|ZP_07721457.1| ribonuclease III [Algoriphagus sp. PR1]
 gi|126575659|gb|EAZ79969.1| ribonuclease III [Algoriphagus sp. PR1]
          Length = 250

 Score =  180 bits (457), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 61/227 (26%), Positives = 103/227 (45%), Gaps = 9/227 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNH 62
           ++++  +G    N +L + ALT SS+     +    S ERLEFLGD ILG +++  LF  
Sbjct: 27  ASIKMMMGSRPFNIALYKLALTPSSLGEETSKGFKISNERLEFLGDAILGAVVAEYLFQK 86

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +    EG L+   + LV+ E+ +    ++ L   + +    R  +     S+  D++E+ 
Sbjct: 87  YPYRDEGFLTETRSKLVNRESLNATGVKIGLKKILNLEIGDRNFIG--NKSLYGDILEAF 144

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180
           + A+YLD G      F+ K         G      + K+++ EW+  +     EYK+   
Sbjct: 145 LGAVYLDKGYHFTKKFILKRILLHFDLDGMITTVSNYKSKIIEWSQRENK-NIEYKILHV 203

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
            G      F V +EI G   +QG   +K+ AEQ A+        I  
Sbjct: 204 HGNQRFKEFIVALEIDGEEASQGKGPTKKKAEQEASKNACDELNITN 250


>gi|183508806|ref|ZP_02958264.1| ribonuclease III [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|182675758|gb|EDT87663.1| ribonuclease III [Ureaplasma parvum serovar 14 str. ATCC 33697]
          Length = 236

 Score =  180 bits (457), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 61/233 (26%), Positives = 108/233 (46%), Gaps = 14/233 (6%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTL 58
           M   ++    K+      N S+  +ALTH S ++ ++  ++Y+RLEFLGD  +  +IS  
Sbjct: 1   MDNKKFLDFLKQNRIEPKNLSIYLEALTHKSYANEHKLTKNYQRLEFLGDACVEWVISNF 60

Query: 59  LF-------NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111
           +F           S  EGE++   +++V +E  S  A++L L  F+ +   L +D  + M
Sbjct: 61  IFNYKIKDNEKMHSLDEGEMTRARSNMVRSEILSYAAKDLGLTDFLMIGVGLEQDQSARM 120

Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDK-YWKQRALKSGKFRRDAKTELQEWAHAKFG 170
             I  D+ E+ I A+  D GI+     ++K   K        +++D KT  QE A     
Sbjct: 121 EKIYEDIFEAFIGAVAQDQGIKKVSLILEKTLIKYFREGQINYQKDYKTIFQEQAQRINK 180

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               YK+    G   D +  V +  + L    G+  +++ AE +AA   + + 
Sbjct: 181 KPIMYKLVRNEG---DKK-EVHLVWNDLIYGIGIASTRKEAEILAAKNAILKL 229


>gi|291320365|ref|YP_003515628.1| ribonuclease III [Mycoplasma agalactiae]
 gi|290752699|emb|CBH40673.1| Ribonuclease III (RNase III) [Mycoplasma agalactiae]
          Length = 226

 Score =  180 bits (457), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 113/227 (49%), Gaps = 10/227 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTH-SSISHSYQESYERLEFLGDRILGLLISTLL 59
           M+++   +          + ++  +A TH SS+++S  ++Y+ LEFLGD IL   +S +L
Sbjct: 1   MNSI--ESFLNNFNIKPVSLAVYRQAFTHGSSVANSKGKNYQTLEFLGDAILQFYVSAIL 58

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           FN F    +G+L++  + LV  ++ +Q+A  L L  F+ +SS++          + AD+ 
Sbjct: 59  FNSFKDKNQGQLTLIRSKLVCTDSLNQIADLLKLKDFLVLSSNVVATEVLSSKKVGADIF 118

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFR-RDAKTELQEWAHAKFGVTPEYK 176
           ESL+AA++LD G+     F+DK      +  K GK   +D+KT LQE+  +    T  Y+
Sbjct: 119 ESLVAAIFLDQGLPKVKEFLDKTLLPLVKQYKEGKIELKDSKTRLQEYMQSFSKKTVFYQ 178

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                    +  F       G     G+  SK  AE+ AA + L + 
Sbjct: 179 TYQSE----NNLFKAEAIYEGNVYGSGVGKSKHEAEENAANDALNKL 221


>gi|305665924|ref|YP_003862211.1| putative ribonuclease III [Maribacter sp. HTCC2170]
 gi|88710699|gb|EAR02931.1| putative ribonuclease III [Maribacter sp. HTCC2170]
          Length = 245

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 59/216 (27%), Positives = 101/216 (46%), Gaps = 12/216 (5%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSA 66
           K +G+   N  + +KA  H S +   ++    +YERLEFLGD +LG +IS  L+N     
Sbjct: 24  KILGFKPKNLKIFKKAFLHRSANRKDEDGNPMNYERLEFLGDAMLGTIISKHLYNEVPDG 83

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG L+   + +VS E  +++ ++L+L  F+    + R     F  +I  +V E+L+ A+
Sbjct: 84  DEGYLTKMRSKIVSREHLNELGKDLNLIKFV----ESRIPKTHFGDNIHGNVFEALVGAI 139

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           YLD G      F+ +      +   +        K+ + EW   +   + +Y V   +G 
Sbjct: 140 YLDRGYNYCEKFIHERVILPYVDIEQLEGKVISYKSLVIEWCQKQKK-SFKYNVYEDTGK 198

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           D    F V + I     A+    SK+ AE+ A+   
Sbjct: 199 DVLKHFAVKLSIGDNVVAKARATSKKKAEERASKRA 234


>gi|288928881|ref|ZP_06422727.1| ribonuclease 3 (Ribonuclease III) (RNase III) [Prevotella sp. oral
           taxon 317 str. F0108]
 gi|288329865|gb|EFC68450.1| ribonuclease 3 (Ribonuclease III) (RNase III) [Prevotella sp. oral
           taxon 317 str. F0108]
          Length = 459

 Score =  179 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 114/227 (50%), Gaps = 15/227 (6%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61
           YS+L + +G+   N S  + AL H S+    ++    + ERLEFLGD IL  ++  +++ 
Sbjct: 20  YSSLFEILGFYPRNISYYKLALMHKSVMRRGANGKPVNNERLEFLGDAILDAIVGDIVYR 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF   +EG L+   + LV  ET +++A+E+ ++  I +SS       S  + +  +  E+
Sbjct: 80  HFPGKREGFLTNTRSKLVQRETLNRLAQEMGISRLI-LSSG---HTSSHNSYMGGNAFEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178
           L+ A+YLD G      F++K    + +   K      + K++L EW+     V  ++ + 
Sbjct: 136 LVGAIYLDRGYSSCMRFMEKRILAKMINIDKVAYKEVNFKSKLIEWSQKN-RVKLDF-IV 193

Query: 179 FRSGPDHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              G D +  P F   V + G+    G   SK+ ++Q+A+   L+R 
Sbjct: 194 KEQGKDKNGSPFFLFCVHLEGVEGCNGRGYSKKESQQLASKLTLERL 240


>gi|255548081|ref|XP_002515097.1| dicer-1, putative [Ricinus communis]
 gi|223545577|gb|EEF47081.1| dicer-1, putative [Ricinus communis]
          Length = 1543

 Score =  179 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 66/244 (27%), Positives = 105/244 (43%), Gaps = 30/244 (12%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            + ++ +  LE  +   F +R LL +A+TH+S   S    Y+RLEF+GD +L  LI+  LF
Sbjct: 1199 LRSIDFDALEGALNIKFQDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 1258

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-LRKDVCSFM-------- 111
              + +   G L+    + V+ E  ++VA    L   +R  S  L K +  F+        
Sbjct: 1259 FTYTNLPPGRLTDLRAAAVNNENFARVAVNHKLHVHLRHGSSALEKQIRDFVREVQDELS 1318

Query: 112  --------------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRD 156
                            +  D+VES+  A++LD G + A  + V +      +        
Sbjct: 1319 KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTAVVWKVFQPLLHPMVTPETLPMH 1378

Query: 157  AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
               ELQE    +     EYK T RSG       TV V I G+      +  K+ A+++AA
Sbjct: 1379 PVRELQERCQQQAEGL-EYKAT-RSGN----LATVEVFIDGVQVGVAQNPQKKMAQKLAA 1432

Query: 217  AEVL 220
               L
Sbjct: 1433 RNAL 1436



 Score = 72.4 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 3/91 (3%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             L+  I Y+     +L +ALT +S   ++   YER E LGD  L  ++S  LF  +    
Sbjct: 985  QLKDIIHYSVPALKIL-EALTAASCQETF--CYERAELLGDAYLKWVVSRFLFLKYPQKH 1041

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIR 98
            EG+L+     +VS     Q A    L S+I+
Sbjct: 1042 EGQLTRMRQQMVSNMVLYQYALIKGLQSYIQ 1072



 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 6/67 (8%)

Query: 161  LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGMD---CSKRAAEQV 214
            L +    +    P Y+     GP H  RFT  V ++        + +     S + A+  
Sbjct: 1470 LNDICLRRNWPMPFYRCVNEGGPAHAKRFTFAVRVNTTDRGWTDECVGEPMPSVKKAKDS 1529

Query: 215  AAAEVLK 221
            AA  +L+
Sbjct: 1530 AAVLLLE 1536


>gi|224068194|ref|XP_002302679.1| dicer-like protein [Populus trichocarpa]
 gi|222844405|gb|EEE81952.1| dicer-like protein [Populus trichocarpa]
          Length = 1817

 Score =  179 bits (455), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 67/244 (27%), Positives = 107/244 (43%), Gaps = 30/244 (12%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            + ++ + TLE  +   F +R LL +A+TH+S   S    Y+RLEF+GD +L  LI+  LF
Sbjct: 1518 LRSVDFDTLEGALDIKFNDRGLLIEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 1577

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-LRKDVCSFM-------- 111
              + +   G L+    + V+ E  ++VA +  L   +R  S  L K +  F+        
Sbjct: 1578 FTYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALEKQIRDFVREVQDELL 1637

Query: 112  --------------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRD 156
                            +  D+VES+  A++LD G + A  + V +      +        
Sbjct: 1638 KPVFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTAVVWKVFQPLLHPMVTPETLPMH 1697

Query: 157  AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
               ELQE    +     EYK T RSG       TV V I G+      +  K+ A+++AA
Sbjct: 1698 PVRELQERCQQQAEGL-EYKAT-RSGN----LATVEVFIDGVQVGVAQNPQKKMAQKLAA 1751

Query: 217  AEVL 220
               L
Sbjct: 1752 RNAL 1755



 Score = 75.1 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 3/91 (3%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             L+  I Y      +L +ALT +S   ++   YER E LGD  L  ++S  LF  +    
Sbjct: 1305 ELKDIINYPVPASKIL-EALTAASCQETF--CYERAELLGDAYLKWVVSRFLFLKYPQKH 1361

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIR 98
            EG+L+     +VS     Q A    L S+I+
Sbjct: 1362 EGQLTRMRQQMVSNMVLYQYALNKGLQSYIQ 1392


>gi|325286163|ref|YP_004261953.1| ribonuclease III [Cellulophaga lytica DSM 7489]
 gi|324321617|gb|ADY29082.1| ribonuclease III [Cellulophaga lytica DSM 7489]
          Length = 246

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 58/215 (26%), Positives = 100/215 (46%), Gaps = 12/215 (5%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSAK 67
            +G+   N S+  KA  H S +   ++    +YERLEFLGD +LG +IS  L+N      
Sbjct: 25  ILGFKPKNISIYRKAFLHRSANKKDKDGNPLNYERLEFLGDSMLGTIISKYLYNEVPLGD 84

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           EG L+   + +VS E  +++ ++L+L  ++    + R     F  +I  +V E+L+ A+Y
Sbjct: 85  EGYLTKMRSKIVSREHLNELGKDLELIKYV----ESRISKSHFGDNIHGNVFEALVGAIY 140

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           LD G +    F+++      +   +        K+ + EW   +      Y V   +G D
Sbjct: 141 LDRGYQYCEKFINERVIGPYVDIEQLEGRVISYKSLVIEWCQKQKKQ-FNYNVYEDTGND 199

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
               F V + I     A+    SK+ AE+ A+   
Sbjct: 200 TLKHFAVKLSIDNNVIAKARATSKKKAEEAASKRA 234


>gi|268564825|ref|XP_002639240.1| C. briggsae CBR-DRSH-1 protein [Caenorhabditis briggsae]
 gi|74847096|sp|Q61XX9|RNC_CAEBR RecName: Full=Ribonuclease 3; AltName: Full=Protein drosha; AltName:
            Full=Ribonuclease III; Short=RNase III
 gi|187036021|emb|CAP24627.1| CBR-DRSH-1 protein [Caenorhabditis briggsae AF16]
          Length = 1061

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 67/218 (30%), Positives = 102/218 (46%), Gaps = 13/218 (5%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
             +  LE+ IG  F N  LL KA T  +   +   +   +RLE+LGD +L L+IS  L+ +
Sbjct: 810  DFHRLEQIIGIEFNNIRLLAKAFTRRNVPFNDLTKGHNQRLEWLGDSVLQLIISDYLYRN 869

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG +S+   SLVS +T S V  +L    F+  +   + D        +AD+VE+ 
Sbjct: 870  FPLHHEGHMSLLRTSLVSNQTQSVVCDDLGFQEFVIKAPHRKND---LKMKDKADLVEAF 926

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFG------VTPE 174
            I ALY+D G+E   +F+   +  R        +  DAK+ LQ+W  A           PE
Sbjct: 927  IGALYVDKGLEYCRSFIRTVFCPRLKHFINSEKWNDAKSHLQQWCLAIRDSRNPNPAMPE 986

Query: 175  YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
            Y++    GP ++  F V V   G   +     +   AE
Sbjct: 987  YRLLGIQGPTNNRIFRVAVYFRGERLSSAAASNMHTAE 1024



 Score = 89.0 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 65/187 (34%), Gaps = 48/187 (25%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSI-------------------------SHSYQ 37
               S  EK I Y F +R ++E AL HSS                          +   +
Sbjct: 583 NFSLSVFEKVIEYKFNDRRIVELALIHSSFRSYYGTTPDHVKNMISNCGYRKKYGAEERR 642

Query: 38  E-----------------------SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
           E                         ERLE+LGD ++ L+ S  LF   +   EG L+  
Sbjct: 643 EKKKGIISLFNIMGGETSGGEPILHNERLEYLGDAVVELIASHHLFFILNHHFEGGLATY 702

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
             +LV     +++A    +   ++ +        +      A+  E+L+A ++LD GI  
Sbjct: 703 RTALVQNRNLAKLAMNCRIDEMLQFAHGADLINEAEWKHALANAFEALMAGVFLDSGIAP 762

Query: 135 AGTFVDK 141
                 K
Sbjct: 763 CDAIFSK 769


>gi|325299342|ref|YP_004259259.1| Ribonuclease 3 [Bacteroides salanitronis DSM 18170]
 gi|324318895|gb|ADY36786.1| Ribonuclease 3 [Bacteroides salanitronis DSM 18170]
          Length = 325

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 58/229 (25%), Positives = 108/229 (47%), Gaps = 13/229 (5%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIST 57
               Y    +  G+   N  + ++AL H S S   ++    + ERLEFLGD IL  +++ 
Sbjct: 16  DKEPYLCFYRMTGFYPRNIDIYKQALLHKSSSIKNEKGRLLNNERLEFLGDAILDAVVAD 75

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
           +++  F+  +EG L+   + +V  ET + +A ++ L   ++ ++       S  + +  +
Sbjct: 76  IVYKRFEKKREGFLTNTRSKIVQRETLNHIAVQIGLDKLVKFTT----RQSSHNSYMGGN 131

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPE 174
             E+LI ALYLD G      F+++    + L   K  R   + K++L EW+         
Sbjct: 132 AFEALIGALYLDRGYRACKKFMEERIISQYLDIDKLSRKEVNFKSKLIEWSQKN-KFQIA 190

Query: 175 YKVTFRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           + +  +S  D  +P F   + +  +    G   SK+ ++Q AA E LK+
Sbjct: 191 FNLVNQSLDDELNPIFNTQILVENVPAGTGKGYSKKESQQEAAHETLKK 239


>gi|300727555|ref|ZP_07060946.1| ribonuclease III [Prevotella bryantii B14]
 gi|299775258|gb|EFI71859.1| ribonuclease III [Prevotella bryantii B14]
          Length = 360

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 58/225 (25%), Positives = 108/225 (48%), Gaps = 13/225 (5%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNH 62
           S+L   +G+   +  L ++AL H SI H   +    + ERLEFLGD IL  ++  +++ H
Sbjct: 21  SSLYDILGFYPHDIKLYKQALMHKSIMHRNSKGKPVNNERLEFLGDAILDAIVGDIVYQH 80

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F   +EG L+   + LV  +T +++A+E+ +   I           S  + +  +  E+L
Sbjct: 81  FPGKREGFLTNTRSKLVQRDTLNKLAQEMGITQLIL----SNGHSSSHNSYVGGNAFEAL 136

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVTF 179
           + A+YLD G      F+      + +   K      + K++L EW+     V   +++T 
Sbjct: 137 VGAVYLDRGYNACMNFMQNRILAKMINIDKVAYKEVNFKSKLIEWSQKN-RVKLSFEMTG 195

Query: 180 R-SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +    +  P F+  V I  +  A+G   SK+ ++Q+A+   L + 
Sbjct: 196 QDKDKNGSPIFSYKVVIENIDGAEGKGYSKKESQQIASKGTLDKL 240


>gi|255037664|ref|YP_003088285.1| ribonuclease III [Dyadobacter fermentans DSM 18053]
 gi|254950420|gb|ACT95120.1| ribonuclease III [Dyadobacter fermentans DSM 18053]
          Length = 248

 Score =  179 bits (454), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 59/220 (26%), Positives = 105/220 (47%), Gaps = 10/220 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSY-----QESYERLEFLGDRILGLLISTLLFN 61
            ++   IG   +N  + + A  H+S S        +ES ERLE+LGD +LG++++  LF 
Sbjct: 25  ESIAHVIGDKPSNLGVYQLAFRHTSASRETAIKGFRESNERLEYLGDAVLGMVVAEFLFT 84

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +    EG L+   + +V+ E+ +Q++R+L L   I    D  +   S  +S+  D +E+
Sbjct: 85  KYPYKDEGFLTEIRSRIVNRESLNQISRKLGLDRLIEY--DGNRRGMSPRSSMYGDALEA 142

Query: 122 LIAALYLDGGIEVAGTFVD-KYWKQRALKS-GKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            + A+YLD G     TF+  K      L S  +   + K+ + EWA  +      +++  
Sbjct: 143 FVGAIYLDKGFRFTRTFIISKLITHYDLDSIIQNNVNFKSLIIEWAQREGKE-IRFEILE 201

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
             G  H   F   + ++    A G   +K+ AEQ A+ + 
Sbjct: 202 ERGTRHHREFISQILVNDEPFAIGNGFTKKKAEQSASEQA 241


>gi|157285009|gb|ABV31244.1| dicer-like 1 [Physcomitrella patens]
          Length = 1662

 Score =  179 bits (454), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 102/244 (41%), Gaps = 30/244 (12%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            M ++ + +LE  IG+ F  RSLL +A+TH+S   S    Y+RLEF+GD +L  LI+  LF
Sbjct: 1316 MLSIDFDSLEASIGHKFRKRSLLVEAITHASRPSSGVPGYQRLEFVGDAVLDYLITRFLF 1375

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM--------- 111
              +     G L+    + V+ E  ++VA +      +R  S   +               
Sbjct: 1376 FKYTDLPPGRLTDLRAAAVNNENFARVAVKHSFHLHLRHGSSALETQIRNFVNDIQTELD 1435

Query: 112  --------------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRD 156
                            +  D++ES+  AL+LD  +E    + V +   Q  +        
Sbjct: 1436 KPGVNSFGLGDFKAPKVLGDILESIAGALFLDACLETDHVWKVFEPLLQPMVTPETLPMH 1495

Query: 157  AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
               ELQE    +     EYK   R+G       TV V + G+      +  K+ A+++AA
Sbjct: 1496 PVRELQERCQQQAEAL-EYKA-SRAGN----VATVEVYVDGVQIGSAQNAQKKMAQKLAA 1549

Query: 217  AEVL 220
               L
Sbjct: 1550 RNAL 1553



 Score = 72.4 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 3/91 (3%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             L+ +I Y  A   +L +ALT +S   ++  SYER E LGD  L  ++S  LF  +    
Sbjct: 1095 QLKHQIDYPIAASKVL-EALTAASCQETF--SYERAELLGDAYLKWVVSRRLFLKYPCKH 1151

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIR 98
            EG+L+     +VS     Q A +  L S+I+
Sbjct: 1152 EGQLTRMRQQIVSNSVLYQYALDKGLQSYIQ 1182



 Score = 41.6 bits (97), Expect = 0.087,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 15/35 (42%)

Query: 161  LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
            L +    +    P+Y+     GP H  +FT  V +
Sbjct: 1591 LNDLCLKRQWPMPQYRCVLEGGPAHAKKFTFSVRV 1625


>gi|325268333|ref|ZP_08134966.1| ribonuclease 3 [Prevotella multiformis DSM 16608]
 gi|324989475|gb|EGC21425.1| ribonuclease 3 [Prevotella multiformis DSM 16608]
          Length = 356

 Score =  179 bits (454), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 58/226 (25%), Positives = 104/226 (46%), Gaps = 13/226 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y +L + IG    + +  + AL H S++    +    + ERLEFLGD IL  ++  +++ 
Sbjct: 20  YLSLYQIIGIIPHDITYYKTALLHKSVARRNAKGKPVNNERLEFLGDAILDAIVGDIVYE 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF   +EG L+   + +V  +T +++A+E+ +   I           S  + +  +  E+
Sbjct: 80  HFPGKREGFLTNTRSKIVQRDTLNRLAKEMGINQLIL----SNGHSSSHNSYLGGNAFEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178
           L+ ALYLD G      F+        +   K      + K++L EW+     V  E+K+ 
Sbjct: 136 LVGALYLDHGYNACMQFMKTRILGELINIDKVAYKEVNFKSKLIEWSQKN-KVKMEFKLI 194

Query: 179 F-RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +      P F   V + GL   +G   SK+ ++Q A+   L+R 
Sbjct: 195 ENQKDKQGSPTFYFQVLMEGLPCGEGRGYSKKESQQEASKLTLQRL 240


>gi|332881433|ref|ZP_08449083.1| ribonuclease III [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332680809|gb|EGJ53756.1| ribonuclease III [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 297

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 60/222 (27%), Positives = 105/222 (47%), Gaps = 12/222 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLFNH 62
           YS+  K +G+   +    E+AL H S S   Q    + ERLEFLGD IL  ++  ++F H
Sbjct: 21  YSSFYKILGFYPHHIQYYEQALHHKSSSIKKQGSWINNERLEFLGDAILDAVVGDIVFRH 80

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F   +EG L+   + +V  ET +++A E+ L   I           +  + +  +  E++
Sbjct: 81  FKGKREGFLTNTRSKIVQRETLNRLAVEIGLDKLII----SSTHSSTHNSYMCGNAFEAM 136

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVTF 179
           + A+YLD G      F+ K    + +   K      + K++L EW   +  V   + +  
Sbjct: 137 VGAIYLDRGYSYCMRFIGKRIMTQLINIDKLAYKEVNFKSKLIEWGQKR-RVEITFDLID 195

Query: 180 RSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           ++      P FT  + I G+   +G   SK+ ++Q+AA + L
Sbjct: 196 QAREGSSTPVFTTQITIEGVTCCKGRGYSKKESQQLAAKDTL 237


>gi|300933883|ref|ZP_07149139.1| ribonuclease III [Corynebacterium resistens DSM 45100]
          Length = 264

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 55/203 (27%), Positives = 89/203 (43%), Gaps = 6/203 (2%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
           +   +  L +  G   ++   L  ALTH S ++      + ERLEFLGD +LGL ++  L
Sbjct: 18  NKTDHEPLRQAWGVDISD-DYLCLALTHRSFANENDNLPNNERLEFLGDAVLGLTVAEQL 76

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  F +  E E+S     +V+    + VAREL+L   I +     +       SI +D V
Sbjct: 77  YRQFPNRTESEISKMRAGVVNMYALADVARELNLGPNILLGRGEMRTGGDDKHSILSDTV 136

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK--FRRDAKTELQEWAHAKFGVTPEYKV 177
           E+++ A+YL+ G   A   V + +  R  ++       D KT L E           Y  
Sbjct: 137 EAILGAIYLEHGFATARETVLRIFSDRITEAPTVGLTMDWKTVLVEKLSDLKLGDAVYAS 196

Query: 178 TFRSGPDHDPRFTVVVEISGLAP 200
               GP+H+  F   + I+    
Sbjct: 197 HGE-GPEHNQTFYAQLAITSKRL 218


>gi|281421655|ref|ZP_06252654.1| ribonuclease 3 [Prevotella copri DSM 18205]
 gi|281404289|gb|EFB34969.1| ribonuclease 3 [Prevotella copri DSM 18205]
          Length = 360

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 57/225 (25%), Positives = 106/225 (47%), Gaps = 11/225 (4%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y +L + +G+   + S  + AL H SI H   +    + ERLEFLGD +L  ++  +++ 
Sbjct: 20  YLSLYEILGFYPHDISYYKMALLHKSIMHRNSKGKPVNNERLEFLGDAVLDAVVGDIVYQ 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF   +EG L+   + LV  +T +++A+E+ +   I           S  + +  +  E+
Sbjct: 80  HFPGKREGFLTNTRSKLVQRDTLNKLAQEMGINQLIL----SNGHSSSHNSYMGGNAFEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178
           L+ A+YLD G +    F+ K    + +   K      + K++L EW+           + 
Sbjct: 136 LVGAIYLDRGYDACMYFMQKRILAQMINIDKVAYKEVNFKSKLIEWSQKNRVKLDFVMLD 195

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +   +  P FT  V + G+    G   SK+ ++QVA+   L++ 
Sbjct: 196 QQKDKNGSPIFTYQVVLEGVDGGVGKGYSKKESQQVASKTSLEKL 240


>gi|332885395|gb|EGK05644.1| hypothetical protein HMPREF9456_02446 [Dysgonomonas mossii DSM
           22836]
          Length = 290

 Score =  178 bits (453), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 64/229 (27%), Positives = 110/229 (48%), Gaps = 13/229 (5%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTL 58
              Y +  K  G+   N +L E+AL H S S   ++    + ERLEFLGD IL  +++ +
Sbjct: 17  KEPYVSFYKIFGFYPYNITLYEQALLHKSSSIKLKDGKWINNERLEFLGDAILDAIVADI 76

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           +F  F+  KEG L+   + +V  ET +++A EL +   I+ S+       +  T +  + 
Sbjct: 77  VFKEFEYKKEGFLTNMRSKIVQRETLNKLALELGIDKLIKTSA----RNTTPNTHMYGNA 132

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEY 175
           +E+LI A+YLD G  V+  FV +   +  L          + K+ L EW+  +  ++  +
Sbjct: 133 LEALIGAIYLDQGYRVSKKFVLERLIKEHLNIDTVAEQEANYKSRLIEWSQKQ-KISVSF 191

Query: 176 KVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +      +++ P F   V I G     G   SK+ ++Q AA E   + 
Sbjct: 192 DLVDSFVDENNTPIFKTAVVILGEQAGLGTGYSKKESQQKAAKEAFNKL 240


>gi|159904268|ref|YP_001551612.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9211]
 gi|159889444|gb|ABX09658.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9211]
          Length = 249

 Score =  178 bits (453), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 63/207 (30%), Positives = 107/207 (51%), Gaps = 7/207 (3%)

Query: 21  SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
           ++  +ALTH+S +   + ++ERLEFLGD +L L  S  +  +F + K G+ S     LVS
Sbjct: 43  NIFNEALTHTSTNS--KTNHERLEFLGDAVLRLAASEYIEENFPNLKVGDRSALRAQLVS 100

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY-LDGGIEVAGTFV 139
            E  ++V +E+++  F+ +     KD  +  T +QA+  E++I ALY     I+    ++
Sbjct: 101 DEWLTKVGQEINIKQFMLIGPKAHKDKAASAT-LQAEATEAMIGALYECLKDIKSIKVWL 159

Query: 140 DKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEIS 196
             YW +  +++     R ++K+ LQEW+       P YK    S    DP RF   V I+
Sbjct: 160 KPYWDKTSKSVLEDPHRLNSKSALQEWSQGNGLDIPIYKNEELSQKHGDPRRFFCKVLIN 219

Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                +G   S++ AE+ AA + L + 
Sbjct: 220 KKILGEGWGSSRKQAEKEAALKALNKL 246


>gi|148241236|ref|YP_001226393.1| ribonuclease III [Synechococcus sp. RCC307]
 gi|147849546|emb|CAK27040.1| Ribonuclease III [Synechococcus sp. RCC307]
          Length = 236

 Score =  178 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 65/209 (31%), Positives = 97/209 (46%), Gaps = 11/209 (5%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           L  ALTH+S       ++E LEFLGD +L L  +  L  +      GE S     LVS  
Sbjct: 25  LHTALTHTSAGLEV--NHEELEFLGDAVLRLACAEFLEENNSKLSVGERSAFRAQLVSDR 82

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL-----DGGIEVAGT 137
             +++A EL L   I+  S    D  +  T ++A+  E+L+ A+YL     DGG+     
Sbjct: 83  WLAELAAELQLDGLIKQGSATAADTTARAT-VRAECCEALVGAVYLAWGGADGGLHAVRQ 141

Query: 138 FVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVE 194
           ++D  W++  L+      R + K+ LQE   A+    P Y  T  +    D  RF  VV 
Sbjct: 142 WLDPQWQRSCLELAEDPHRHNWKSALQELTQAQQAGLPSYSTTEENSNHGDQRRFRSVVS 201

Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           ++      G   S+R AEQ AA   L++ 
Sbjct: 202 VNAKEKGCGWGPSRRLAEQEAARAALEQL 230


>gi|260061436|ref|YP_003194516.1| putative ribonuclease III [Robiginitalea biformata HTCC2501]
 gi|88785568|gb|EAR16737.1| putative ribonuclease III [Robiginitalea biformata HTCC2501]
          Length = 245

 Score =  178 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 56/216 (25%), Positives = 105/216 (48%), Gaps = 12/216 (5%)

Query: 11  KRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + +G+   +  + ++A  H S++    + +  +YERLEFLGD +LG +IS  L+N   + 
Sbjct: 24  RILGFKPKSLEVYKRAFLHRSVNKKDKNGHPMNYERLEFLGDSMLGTIISKHLYNEVPAG 83

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG L+   + +VS +  +++ ++L L +F+    + R     F  +I  +V E+L+ A+
Sbjct: 84  DEGYLTKMRSKIVSRKHLNELGKDLGLLNFV----ESRIPKAHFGENIHGNVFEALVGAI 139

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           YLD G +    F+     +  +   +        K+ + EW   +     E++V   +G 
Sbjct: 140 YLDRGYKYCEKFIQSRVIEPYVDIEQLEGQVISYKSLVIEWCQKQKKE-FEFEVYEDTGN 198

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           D    F V + I G   A+    SK+ AE+ A+   
Sbjct: 199 DPVKHFAVKLHIDGRILAKARATSKKKAEEKASRRA 234


>gi|148377702|ref|YP_001256578.1| ribonuclease III (RNase III) [Mycoplasma agalactiae PG2]
 gi|148291748|emb|CAL59137.1| Ribonuclease III (RNase III) [Mycoplasma agalactiae PG2]
          Length = 226

 Score =  178 bits (452), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 111/227 (48%), Gaps = 10/227 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTH-SSISHSYQESYERLEFLGDRILGLLISTLL 59
           M+++              + ++  +A TH SS+++S  ++Y+ LEFLGD IL   +S +L
Sbjct: 1   MNSI--ENFLNNFNIKPVSLAVYRQAFTHGSSVANSKGKNYQTLEFLGDAILQFYVSAIL 58

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           FN F    +G+L++  + LV  ++ +Q+A  L L  F+ +SS++          + AD+ 
Sbjct: 59  FNSFKDKNQGQLTLIRSKLVCTDSLNQIADLLKLKDFLVLSSNVVATEVLSSKKVGADIF 118

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFR-RDAKTELQEWAHAKFGVTPEYK 176
           ESL+AA++LD G+     F+DK      +  K GK   +D+KT LQE   +    T  Y+
Sbjct: 119 ESLVAAIFLDQGLPKVKDFLDKTLLPLVKQYKEGKIELKDSKTRLQEHMQSFSKKTVFYQ 178

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                    +  F       G     G+  SK  AE+ AA + L + 
Sbjct: 179 TYQSE----NNLFKAEAIYEGNVYGSGVGKSKHEAEENAANDALNKL 221


>gi|307564748|ref|ZP_07627276.1| ribonuclease III [Prevotella amnii CRIS 21A-A]
 gi|307346470|gb|EFN91779.1| ribonuclease III [Prevotella amnii CRIS 21A-A]
          Length = 266

 Score =  178 bits (452), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 56/225 (24%), Positives = 105/225 (46%), Gaps = 13/225 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y +L +  G+   N S  + AL H S+S   ++    + ERLEFLGD +L  +++ +++N
Sbjct: 20  YLSLYQITGFIPHNISYYKTALLHKSVSQRNKKGKLINNERLEFLGDAVLDCVVADIVYN 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F + +EG L+   + +V  ET ++V+ E+ +   ++          +   +I  +  E+
Sbjct: 80  RFPNKREGFLTNTRSKIVKRETLNKVSTEMGINKMLK----QNGHTITHNCNIAGNAFEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYW---KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           L+ ALY+D G      F+  +         K      + K++L EW      V+  +   
Sbjct: 136 LVGALYIDHGYNACMIFMRDHVCGCLLSIEKMAYQEMNYKSKLIEWTQKN-KVSVTFDEV 194

Query: 179 FRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             S  ++ +P F   V I  +   +G   +K+ ++Q AA    KR
Sbjct: 195 KTSIDENGNPIFLAQVVIGNVRCEEGKGFTKKESQQNAAKLTYKR 239


>gi|260436673|ref|ZP_05790643.1| ribonuclease III [Synechococcus sp. WH 8109]
 gi|260414547|gb|EEX07843.1| ribonuclease III [Synechococcus sp. WH 8109]
          Length = 241

 Score =  178 bits (452), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 63/212 (29%), Positives = 93/212 (43%), Gaps = 10/212 (4%)

Query: 19  NRSLL---EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
           N  LL   ++ALTH S       + ERLEFLGD +L L  +  +         G  S   
Sbjct: 23  NPELLALVDQALTHVS--SGRTRNLERLEFLGDAVLRLAATEFIDRDHTDLAVGACSNLR 80

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIEV 134
             LVS    + V   LD+   + V    + D  +  + ++AD  E+LI ALY   G +E 
Sbjct: 81  AQLVSDRWLADVGSALDIEQHLLVGRHAQGDRSAQ-SRLRADATEALIGALYSALGNVEA 139

Query: 135 AGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTV 191
              ++  +W    +A+ +   + + KT LQEW+  +    P Y     S    DP RF  
Sbjct: 140 IHRWLTPHWCATAQAVLTNPHQFNGKTTLQEWSQGQGLGLPNYATEECSRQHGDPERFRC 199

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            V I     A+    S++ AEQ AA   L+  
Sbjct: 200 RVSIQDRELAEAKGRSRKEAEQNAATAALQAL 231


>gi|220905831|ref|YP_002481142.1| Ribonuclease III [Cyanothece sp. PCC 7425]
 gi|219862442|gb|ACL42781.1| Ribonuclease III [Cyanothece sp. PCC 7425]
          Length = 238

 Score =  177 bits (451), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 61/211 (28%), Positives = 95/211 (45%), Gaps = 9/211 (4%)

Query: 5   RYSTLEKRIGY---AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +   L  R+G          LL+ ALTH + S   Q +YE+LEF GD +  L ++  L  
Sbjct: 11  QLEKLIDRLGLVNPPPIRWDLLDLALTHPTFS--PQANYEQLEFFGDAVARLTVAQFLRQ 68

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +     GE +   + LVS  T + +     L  F+ + S    D  S  TS  AD +E+
Sbjct: 69  TYPDRSVGEWTAIRSVLVSDRTLATIGDSYGLERFLLMGSSAAAD-ASGQTSRLADAMEA 127

Query: 122 LIAALYLD-GGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           L+AALYL      +   ++D++W+    A+ +    ++ K  LQ W  A     PEY+V 
Sbjct: 128 LLAALYLSTSDFRLIHPWLDRHWQPLAEAILNDPAHQNYKAALQTWTQATSRTLPEYRVQ 187

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
                  + RF   V + G+   QG   S +
Sbjct: 188 EIQQASPEERFQAEVWVQGVLLGQGTGRSIK 218


>gi|260591983|ref|ZP_05857441.1| ribonuclease 3 [Prevotella veroralis F0319]
 gi|260536267|gb|EEX18884.1| ribonuclease 3 [Prevotella veroralis F0319]
          Length = 354

 Score =  177 bits (451), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 60/226 (26%), Positives = 102/226 (45%), Gaps = 13/226 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y +L   IG+   N    + AL H SI+    +    + ERLEFLGD IL  ++  +++ 
Sbjct: 20  YLSLYHIIGFIPHNIDYYKTALLHKSIARRNAKGKPVNNERLEFLGDAILDAIVGDIVYE 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF   +EG L+   + +V  +T +++A+E+ +   I           S  + +  +  E+
Sbjct: 80  HFPYKREGFLTNTRSKIVQRDTLNRLAKEMGINQLIL----SNGHSSSHNSYMGGNAFEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178
           L+ ALYLD G      F+ K      +   K      + K++L EW+     V  E+++ 
Sbjct: 136 LVGALYLDHGYNACMEFMRKQILGELINIDKVAYKEVNFKSKLIEWSQKN-KVNMEFRLI 194

Query: 179 F-RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                    P F   V +  +A  +G   SK+  +Q AA   L+R 
Sbjct: 195 EHEKDKQGSPTFHFQVFMEEIACGEGRGYSKKEGQQEAAKLTLQRL 240


>gi|300868781|ref|ZP_07113390.1| ribonuclease III [Oscillatoria sp. PCC 6506]
 gi|300333217|emb|CBN58582.1| ribonuclease III [Oscillatoria sp. PCC 6506]
          Length = 237

 Score =  177 bits (450), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 71/216 (32%), Positives = 110/216 (50%), Gaps = 15/216 (6%)

Query: 5   RYSTLEK---RIGYAFANR---SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58
           R   LEK   ++G    NR    LL+ ALTH + S   Q +YE+LEF+GD ++ L  S L
Sbjct: 8   RQKELEKLVEKLGLPDRNRVNWQLLDLALTHPTAS--TQANYEQLEFIGDAVVRLAASEL 65

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF  +  +  GE +   + LVS  T +Q+A       ++ VSS    D      S  AD 
Sbjct: 66  LFETYPGSSVGEFAAIRSLLVSDRTLAQIADSYGFGRYLIVSSSAACDKAGE-ESRLADA 124

Query: 119 VESLIAALYLDGG-IEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEY 175
            E+++AALYL    +++   ++D +++ RA  + S   R++ K  LQEW   ++ + PEY
Sbjct: 125 FEAVLAALYLSTNTLQLIRPWLDPHFQPRAAQILSDPARQNYKAALQEWTQGQYKILPEY 184

Query: 176 KVTFRSGPDH--DPRFTVVVEISGLAPAQGMDCSKR 209
            V   +G  H  + RFT  V + G    +G   S +
Sbjct: 185 NV-KETGRVHGEEERFTAEVWLRGDLLGEGKGRSIK 219


>gi|325859734|ref|ZP_08172864.1| ribonuclease III [Prevotella denticola CRIS 18C-A]
 gi|327312785|ref|YP_004328222.1| ribonuclease III [Prevotella denticola F0289]
 gi|325482660|gb|EGC85663.1| ribonuclease III [Prevotella denticola CRIS 18C-A]
 gi|326945209|gb|AEA21094.1| ribonuclease III [Prevotella denticola F0289]
          Length = 356

 Score =  177 bits (450), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 58/226 (25%), Positives = 104/226 (46%), Gaps = 13/226 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y +L + IG    + +  + AL H S++    +    + ERLEFLGD IL  ++  +++ 
Sbjct: 20  YLSLYQIIGIIPHDITYYKTALLHKSVARRNAKGKPVNNERLEFLGDAILDAIVGDIVYE 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF   +EG L+   + +V  +T +++A+E+ +   I           S  + +  +  E+
Sbjct: 80  HFPGKREGFLTNTRSKIVQRDTLNRLAKEMGINQLIL----SNGHSSSHNSYLGGNAFEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178
           L+ ALYLD G      F+        +   K      + K++L EW+     V  E+K+ 
Sbjct: 136 LVGALYLDHGYNACMKFMKTQILGELINIDKVAYKEVNFKSKLIEWSQKN-KVKMEFKLI 194

Query: 179 F-RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +      P F   V + GL   +G   SK+ ++Q A+   L+R 
Sbjct: 195 ENQKDKQGSPTFYFQVLMEGLPCGEGRGYSKKESQQEASKLTLQRL 240


>gi|78211701|ref|YP_380480.1| RNAse III [Synechococcus sp. CC9605]
 gi|78196160|gb|ABB33925.1| Ribonuclease III [Synechococcus sp. CC9605]
          Length = 241

 Score =  177 bits (450), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 92/206 (44%), Gaps = 7/206 (3%)

Query: 22  LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
           L+++A+TH S       + ERLEFLGD +L L  +  +  H      G  S     LVS 
Sbjct: 29  LVDQAMTHVS--SGRDRNLERLEFLGDAVLRLAATEFIDRHHADLTVGACSNLRAQLVSD 86

Query: 82  ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIEVAGTFVD 140
              + V   L +   + +    + D  +  + ++AD  E+LI ALY   G ++    ++ 
Sbjct: 87  RWLADVGEALGIEEHLLLGRHAQGDRSA-RSRLRADATEALIGALYTALGNLKAIHRWLT 145

Query: 141 KYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISG 197
            +W    +A+ +   +   KT LQEW+  +    P Y     S    DP RF   V I G
Sbjct: 146 PHWSATTQAVLATPHQFGGKTTLQEWSQGQGLGLPRYATEECSRQHGDPERFRCQVSIQG 205

Query: 198 LAPAQGMDCSKRAAEQVAAAEVLKRE 223
              A+    S++ AEQ AA   L+  
Sbjct: 206 RNLAEAKGRSRKEAEQNAATAALQAL 231


>gi|293363981|ref|ZP_06610717.1| ribonuclease III [Mycoplasma alligatoris A21JP2]
 gi|292552471|gb|EFF41245.1| ribonuclease III [Mycoplasma alligatoris A21JP2]
          Length = 226

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 58/214 (27%), Positives = 100/214 (46%), Gaps = 7/214 (3%)

Query: 15  YAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
               N+ +  +AL H S        ESYERLEFLGD +L L +S+ ++  F + ++G+++
Sbjct: 16  IEPKNKLIYFQALKHGSFVKKQSKLESYERLEFLGDSVLQLFVSSYIYTKFPNMEQGKMT 75

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                +V+A + SQV+ ++ L + ++             T +Q+D+ ES+I A+++D G+
Sbjct: 76  ELRAKVVNANSLSQVSNKIGLINLLKTGGGQTAVSVKSSTKVQSDIFESIIGAIFVDLGL 135

Query: 133 EVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
             A  F+  +         K   +D KT LQE+         +Y V        +  F+ 
Sbjct: 136 NHAYKFIRLHLSSTIDNLFKHENKDPKTRLQEYFQNISRENIKYIVDQL----PNKSFSA 191

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
                 +    G   SK+ +E  AA E LK+  I
Sbjct: 192 KATHDKIVYGIGKGSSKKESEINAALEALKKLNI 225


>gi|288800507|ref|ZP_06405965.1| ribonuclease III [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332720|gb|EFC71200.1| ribonuclease III [Prevotella sp. oral taxon 299 str. F0039]
          Length = 321

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 62/222 (27%), Positives = 108/222 (48%), Gaps = 13/222 (5%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHF 63
           +L   +G+   N  L + AL+H SI    ++    + ERLEFLGD IL  ++  +++ HF
Sbjct: 2   SLYTILGFYPRNIELYQMALSHKSIHFKNKKGKPVNNERLEFLGDAILDAIVGDIVYKHF 61

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
              +EG L+   + LV  ET +++A+E+ L+  I  SS       S+M     +  E+LI
Sbjct: 62  PGKREGFLTNTRSKLVQRETLNKIAQEIGLSRLIY-SSGRNFSHNSYMA---GNAFEALI 117

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVTFR 180
            ALYLD G  +   F+ +   ++ +          + K+ L EWA     +   + +  +
Sbjct: 118 GALYLDRGYNLCMRFMQEKILKKMVNIDTVAYKEVNFKSRLIEWAQKN-KMNIAFNLLEQ 176

Query: 181 SG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
               + +P F   V I G+        SK+ ++Q+A+ E L+
Sbjct: 177 KKDEEGNPVFKYCVVIEGIKCNSASGFSKKESQQLASEETLE 218


>gi|150024312|ref|YP_001295138.1| ribonuclease III [Flavobacterium psychrophilum JIP02/86]
 gi|149770853|emb|CAL42318.1| Ribonuclease III [Flavobacterium psychrophilum JIP02/86]
          Length = 246

 Score =  177 bits (449), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 61/222 (27%), Positives = 106/222 (47%), Gaps = 12/222 (5%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLL 59
           L +S LEK +G+   N +   +A TH S++         +YERLEF+GD +LG +I+  L
Sbjct: 18  LFFSKLEKILGFKPLNLTHFRRAFTHRSMNKLDEKGNPMNYERLEFMGDAMLGSVIAAHL 77

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           FN   +  EG L+   + +VS E  +++ ++L+L  F+    + +  + +F  +I  ++ 
Sbjct: 78  FNMSPTGDEGYLTKMRSKIVSREHLNELGKDLNLIQFL----ESKVTLQNFGENIHGNLF 133

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYK 176
           E+ + A+YLD G      F+ K   +  +   K        K+ L EW   +  V   Y 
Sbjct: 134 EAFVGAIYLDRGFVYCEKFIHKKVIKPYVDIDKLEGKVISYKSLLIEWCQKEKRV-FHYD 192

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           +           F V + I G   A+    SK+ AE++A+  
Sbjct: 193 IYEDEDAGKLKYFGVKLSIDGKVVAKARATSKKKAEEIASKR 234


>gi|33241211|ref|NP_876153.1| dsRNA-specific ribonuclease/ribonuclease III [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
 gi|5738536|emb|CAB52818.1| ribonuclease III [Prochlorococcus marinus]
 gi|33238741|gb|AAQ00806.1| dsRNA-specific ribonuclease/ribonuclease III [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
          Length = 249

 Score =  177 bits (449), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 103/207 (49%), Gaps = 7/207 (3%)

Query: 21  SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
            +L +ALTH+S + S   ++ERLEF GD +L L  S  + +HF     G+ S     LVS
Sbjct: 44  KILNEALTHTSFNLSI--NHERLEFQGDAVLRLAASEYIQSHFPKLSVGDRSALRAQLVS 101

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY-LDGGIEVAGTFV 139
               ++V  ++ + + + +++   KD  +   +I A+  E+LI ALY     I+    ++
Sbjct: 102 DRWLAKVGYKIGIKTTMLIANKALKDEAAT-DTICAEGTEALIGALYECLRNIDAIQNWL 160

Query: 140 DKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEIS 196
           + YW  +   + +   +++ K+ LQEW+  +    P Y +   S    D  RF   V I 
Sbjct: 161 EPYWNIESEEVLADPHKQNEKSALQEWSQGQGLNKPIYTIKEISKQHGDLKRFYCTVHIQ 220

Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                +G   S++ A++ AA E LK+ 
Sbjct: 221 NDFRGEGWGSSRKKAQKEAAKEALKKL 247


>gi|72383017|ref|YP_292372.1| RNAse III [Prochlorococcus marinus str. NATL2A]
 gi|72002867|gb|AAZ58669.1| RNAse III [Prochlorococcus marinus str. NATL2A]
          Length = 247

 Score =  177 bits (449), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 60/210 (28%), Positives = 106/210 (50%), Gaps = 7/210 (3%)

Query: 16  AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
              N   + ++LTHSS +     +YE LEFLGD +L L+ S  + N +   + GE S   
Sbjct: 32  KIKNILYINESLTHSSANSEI--NYENLEFLGDAVLRLIASDFIKNKYPYMQVGERSELR 89

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI-EV 134
           + LVS     +V +++++ S + + +   +D  +   +IQA+  E+LI ALY    I E 
Sbjct: 90  SHLVSDLWLEEVGKKIEINSVLVIGNKALRDKSA-NATIQAEATEALIGALYESLTIVEP 148

Query: 135 AGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTV 191
              ++  +W++  + + +   +++ K+ LQE   +K    P YK        D+  RF  
Sbjct: 149 IKDWLIPFWEEKSKEVLADPHKKNYKSALQELTQSKGLSIPIYKTIEIDKKHDNPKRFFC 208

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V +   + A+G   S + AE+ AA++ LK
Sbjct: 209 NVYVKNRSIAEGSGKSIKQAEKNAASKALK 238


>gi|86131058|ref|ZP_01049657.1| ribonuclease III [Dokdonia donghaensis MED134]
 gi|85818469|gb|EAQ39629.1| ribonuclease III [Dokdonia donghaensis MED134]
          Length = 245

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 61/221 (27%), Positives = 108/221 (48%), Gaps = 12/221 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           +  ++  IG+   N ++ EKA TH S+    ++    +YERLEFLGD +LG +I+  LFN
Sbjct: 19  FMRMQSIIGFKPKNLAIYEKAFTHRSLGLKKEDGNPLNYERLEFLGDAMLGSVIAAHLFN 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
                 EG L+   + +VS +  +++ R+L+L  +++ S  +         +I  ++ E+
Sbjct: 79  EVQGGNEGYLTKMRSKVVSRKHLNELGRDLNLVRYVKASIPIDNFGA----NIHGNLFEA 134

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVT 178
           L+ A+YLD G      F+ K   +  +   K        K+ L EW   +   T +++  
Sbjct: 135 LVGAIYLDRGYRYCEKFIAKRVIEPYVDIEKLEGRIISYKSVLIEWCQKEKH-TFKFETF 193

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
             +G D    F V + I G   A+    SK+ AE++A+   
Sbjct: 194 EDTGQDAVKHFGVRLHIDGKIIAKARATSKKKAEEIASKRA 234


>gi|155370768|ref|YP_001426302.1| hypothetical protein FR483_N670L [Paramecium bursaria Chlorella
           virus FR483]
 gi|155122358|gb|ABT14226.1| hypothetical protein MT325_M672L [Paramecium bursaria chlorella
           virus MT325]
 gi|155124088|gb|ABT15955.1| hypothetical protein FR483_N670L [Paramecium bursaria Chlorella
           virus FR483]
          Length = 266

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 64/222 (28%), Positives = 98/222 (44%), Gaps = 7/222 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFD 64
             +   +G    +  L   A    S +      E++ERLEFLGD +LG LI+  L++ F 
Sbjct: 43  EDIAHLVGMPVGDFGLYVTAF---SYNPILEGGETFERLEFLGDSVLGFLIAKYLYDTFP 99

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG L+      VS +  S++A  L L ++I +S        +    I  D  E+LI 
Sbjct: 100 GKNEGILTRIRVKFVSGKFLSKLALNLGLHNYIIMSQKGLYRGWNTNPKILEDAFEALIG 159

Query: 125 ALYLDGGIEVAGTFVDKYWKQRA-LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           A+YLDGGI  A  F      + A ++      + K  L +         PE+ + F  G 
Sbjct: 160 AIYLDGGINAAKQFFMTTLARHANIQELLIDSNHKDRLAKHCRRLSLGRPEFVIQFERGG 219

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            +   F V V + G   A+G   +++ AEQ A  + L   GI
Sbjct: 220 ANS-LFIVGVHVDGNKFAEGSGTTRKDAEQDACNKALLHMGI 260


>gi|254423613|ref|ZP_05037331.1| ribonuclease III [Synechococcus sp. PCC 7335]
 gi|196191102|gb|EDX86066.1| ribonuclease III [Synechococcus sp. PCC 7335]
          Length = 263

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 62/227 (27%), Positives = 101/227 (44%), Gaps = 12/227 (5%)

Query: 5   RYSTLEKRIGYAFAN--RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
               L   +G + A+    LLE AL   S   S  ++ E+LEFLGD  L L  +  L   
Sbjct: 33  DIEALLTALGISAADVRLELLELALVDIS--SSATQNNEKLEFLGDAALRLAAAEFLMER 90

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +     G++S   + +VS  T + +A+   L  ++ +S     D      S  AD  E++
Sbjct: 91  YPQMALGDMSAVRSQIVSDRTLATLAKRYHLRRYLILSKSAAGDKA-GTDSRLADTFEAI 149

Query: 123 IAALYLDGG-IEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           + ALYL  G + +   ++D ++ +  ++L+S   R++ K  LQE   + +   P YKV+ 
Sbjct: 150 LGALYLSAGNLSLIRPWLDPHFARLTQSLRSDPARQNYKAALQELTQSHYKSLPTYKVSE 209

Query: 180 RSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAA---EVLKR 222
            S    D  RF             G   S + AEQ AA      L++
Sbjct: 210 ISQIHGDEERFQAEAWFQDKLWGTGKGRSMKMAEQAAARIAFNALEQ 256


>gi|148238540|ref|YP_001223927.1| ribonuclease III [Synechococcus sp. WH 7803]
 gi|147847079|emb|CAK22630.1| Ribonuclease III [Synechococcus sp. WH 7803]
          Length = 240

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 59/204 (28%), Positives = 98/204 (48%), Gaps = 6/204 (2%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           L +ALTH+S        +E+LEFLGD +L L  S  +   +     GE S     LVS  
Sbjct: 32  LNEALTHTS--SGLNPHHEQLEFLGDAVLRLAASEFIATAYPQMPVGERSSLRAQLVSDR 89

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
             +Q+   + +A + R+      D  +  T I+A++ E+LI A+Y   G++    ++  +
Sbjct: 90  WLAQLGEAIAIAQWWRIGPKASGDPSAAAT-IRAELSEALIGAVYRIAGLQTVQAWLTPH 148

Query: 143 WK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLA 199
           W+    A+ +  +R ++K+ LQEW+  +    P Y  +  S    D  RF   V +    
Sbjct: 149 WQTSAEAVLADPYRGNSKSALQEWSQGQGLGLPRYSCSEVSQSHGDPKRFQASVTLPPDL 208

Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223
            A G   S+R AEQ AA  ++ + 
Sbjct: 209 SAAGWGGSRREAEQQAAEALMAQL 232


>gi|284039991|ref|YP_003389921.1| ribonuclease III [Spirosoma linguale DSM 74]
 gi|283819284|gb|ADB41122.1| ribonuclease III [Spirosoma linguale DSM 74]
          Length = 253

 Score =  176 bits (446), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 94/207 (45%), Gaps = 9/207 (4%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISH-----SYQESYERLEFLGDRILGLLISTLLFNH 62
           ++   IG   +N  L + AL H+S S       ++ES ERLE+LGD +LG++I+  LF  
Sbjct: 30  SIAHIIGARPSNLGLYQLALRHTSASKATAIEGFRESNERLEYLGDAVLGMVIAEFLFKK 89

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +    EG L+   + +V+ ET + +AR++ L   I      R       TS+  D +E+L
Sbjct: 90  YPYKDEGFLTEIRSRIVNRETLNGIARKIGLDQLIEY-DGSRTRSLPARTSMYGDALEAL 148

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180
           + A+YLD G   +  F+ K            +   + K+ L EWA  +      +++   
Sbjct: 149 VGAVYLDKGFRFSRRFILKDLLAHYDIESVVQNNGNYKSRLIEWAQREGKE-IRFEIVSE 207

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCS 207
            G  H   F   V I     A G   S
Sbjct: 208 KGNSHFREFISQVVIDDEPFATGSGYS 234


>gi|86605510|ref|YP_474273.1| ribonuclease III [Synechococcus sp. JA-3-3Ab]
 gi|86554052|gb|ABC99010.1| ribonuclease III [Synechococcus sp. JA-3-3Ab]
          Length = 241

 Score =  175 bits (445), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 62/217 (28%), Positives = 101/217 (46%), Gaps = 20/217 (9%)

Query: 6   YSTLEKRIGYAFANR--------SLLEKALTHSSISHSYQESYERLEFLGDRILGLLIST 57
              L  R+G  F +          LL++AL H S+    Q + +RLEFLGD +L +L + 
Sbjct: 12  LEHLLNRLG--FKDPAWLEQLRWDLLDQALIHPSL--DGQRNNDRLEFLGDSVLRILATE 67

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF  +     GEL+   + L+S    +++A    L  ++ V S  + D  +      AD
Sbjct: 68  FLFQSYPHLSVGELTAVRSDLISDAHLAELADLHGLERYLEVGSSSQND-LAGRERRLAD 126

Query: 118 VVESLIAALYLDGGIEVAGT---FVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVT 172
             E+++ +LYL  G+        ++D Y++QR  +      RR+ K  LQE     +G  
Sbjct: 127 AFEAVLGSLYLSWGMHTLARLHPWLDPYFRQRVEQWFQDPTRRNPKAALQELTQRLWGTL 186

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           PEY++      +H P FT+ V   G    +G   SK+
Sbjct: 187 PEYRLVAAR--EHPPHFTMEVWGHGQCWGRGEGRSKK 221


>gi|311977725|ref|YP_003986845.1| probable ribonuclease 3 [Acanthamoeba polyphaga mimivirus]
 gi|82000280|sp|Q5UQT7|RNC_MIMIV RecName: Full=Probable ribonuclease 3; AltName: Full=Ribonuclease
           III; Short=RNase III
 gi|55416962|gb|AAV50612.1| RNAse III (dsRNA binding motif) [Acanthamoeba polyphaga mimivirus]
 gi|308204768|gb|ADO18569.1| probable ribonuclease 3 [Acanthamoeba polyphaga mimivirus]
          Length = 538

 Score =  175 bits (445), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 101/223 (45%), Gaps = 19/223 (8%)

Query: 19  NRSLLEKALTHSSI-----------------SHSYQESYERLEFLGDRILGLLISTLLFN 61
           +  L  +A+TH S                      ++S ERL+FLGD ++  +I   LFN
Sbjct: 312 DLKLFYEAMTHRSYLIRKNLPNRDVPKSKSIVRLQKKSNERLQFLGDAVIHFIIGEYLFN 371

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +  + EG L+     L ++E+   +A++ D++S++ +S ++         +I    +E+
Sbjct: 372 KYADSGEGYLTRLRCKLENSESLFFLAKQSDISSYLLISQNIEVLHGRENVNIIGGGLEA 431

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            + ALYL+ G+     F+ +  +      +  +   + K  + +  +      P YK+  
Sbjct: 432 FVGALYLNIGLGTVKQFLLEIMRIELDINQIAENETNYKDLILQLYNKNKWGHPVYKILK 491

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             GPDH   FT+ + +       G   SK+ AEQ+A+ ++ + 
Sbjct: 492 EEGPDHCKIFTMGLYLGNKLMGIGKASSKKKAEQIASKKMYQN 534



 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 50/216 (23%), Positives = 96/216 (44%), Gaps = 12/216 (5%)

Query: 16  AFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
            + +  + E+A+ H S  +    ++YERLE+LGD I  ++I+   ++ ++   EG L+  
Sbjct: 39  KYVDMHIFEEAMLHVSTIYEESDKTYERLEYLGDAIFHMIITEYFYHRYNEENEGFLTRL 98

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
              +   ++  ++++ L L +F+++         S    I  D+ ES I A YL+ G++ 
Sbjct: 99  RIRIERGDSMVELSKNLGLNNFVQI------YGISLNDHILEDIFESFIGAFYLNFGMKY 152

Query: 135 AGTFVDKYWKQRALKSGKFRRD--AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FT 190
              F+ K  ++    S     D   K  L  + H      P+Y       P ++ R  F 
Sbjct: 153 TRLFIIKLIEKHKNLSELIAYDDNYKDLLLRYFHQMKWGHPKYIEEIVIDPKNNQRNKFI 212

Query: 191 VVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
             V+         G   +K+ +EQ+A+   L   G+
Sbjct: 213 SKVKNPFDKVIGIGSASTKKKSEQLASQMALTNLGV 248


>gi|291572035|dbj|BAI94307.1| ribonuclease III [Arthrospira platensis NIES-39]
          Length = 246

 Score =  175 bits (444), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 61/211 (28%), Positives = 107/211 (50%), Gaps = 9/211 (4%)

Query: 5   RYSTLEKRIGYAFANR---SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +   L +R+G +  ++    LL+ ALTH S+S   Q++YE+LEF+GD ++ L  S LLF 
Sbjct: 15  QLEKLIERLGLSPQHKIAWQLLDLALTHPSVSS--QDNYEQLEFVGDSVVRLAASELLFE 72

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +A  GE +   + LVS    ++++    L  ++ V     +D      S  AD  E+
Sbjct: 73  TYPNAPVGEFAAVRSILVSDRILAEISESYGLGRYLLVGGSATRDRLGE-ESRLADCFEA 131

Query: 122 LIAALYLDGG-IEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++AALYL    +E+   ++D +  +RA +  +   R++ K  LQEW  + + + P+YKV 
Sbjct: 132 VLAALYLSTNTLELIRPWLDPHLLERATEIFNDPARQNYKAALQEWTQSCYKILPQYKVN 191

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
                  + RFT  V +       G   + +
Sbjct: 192 ETGYAGDEGRFTASVWLRDEQLGTGTGKTIK 222


>gi|312599268|gb|ADQ91291.1| hypothetical protein BpV2_124 [Bathycoccus sp. RCC1105 virus BpV2]
          Length = 242

 Score =  175 bits (444), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 101/221 (45%), Gaps = 10/221 (4%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLF 60
           +   ++E  +G    N  L +KA  H SI    +    S+E LEF+GD +LG +I+  LF
Sbjct: 3   IDRQSVELLVGTKLTNLDLYQKAFRHKSILKEDESLDGSFETLEFIGDSVLGFVITKFLF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + +++ +EG L+     LV  ET + +A +L L +++++     ++       I  DV E
Sbjct: 63  DRYENRQEGFLTKARTKLVRGETLADIATKLGLYNWVQMDEKGMRNEWFKNPKILEDVFE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYW-KQRALKSGKFRRD--AKTELQEWAHAKFGVTPEYKV 177
           +L+ A+Y+D G+  A  F+   +     +       D   K  L           PEY+V
Sbjct: 123 ALVGAIYMDLGLLHAKQFILNIYTNPEYVNMNSIMVDDNFKDHLMRHCQTNNLSLPEYRV 182

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
                   +  F + V +  +   +G   +K+ AEQ AA  
Sbjct: 183 LNHE----NGIFYIDVYVDNVFLGRGHAKNKKQAEQHAAKR 219


>gi|148985143|ref|ZP_01818382.1| ribonuclease III [Streptococcus pneumoniae SP3-BS71]
 gi|147922588|gb|EDK73706.1| ribonuclease III [Streptococcus pneumoniae SP3-BS71]
          Length = 153

 Score =  175 bits (444), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 43/147 (29%), Positives = 68/147 (46%), Gaps = 3/147 (2%)

Query: 78  LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137
           +V  E+ +  AR+     FI++     K       +I  D  E+ + AL LD  +     
Sbjct: 2   IVREESLAGFARDCQFDQFIKLGKGEEKSGGRNRDTILGDAFEAFLGALLLDKDVAKVKE 61

Query: 138 FVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
           F+ +    + +++G+F    D KT LQE       V   Y+V   +GP HD  F V V +
Sbjct: 62  FIYQVMIPK-VEAGEFEMITDYKTHLQELLQVNGDVAIRYQVISETGPAHDKVFDVEVLV 120

Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            G +  QG   SK+ AEQ AA   +++
Sbjct: 121 EGKSIGQGQGRSKKLAEQEAAKNAVEK 147


>gi|255027417|ref|ZP_05299403.1| ribonuclease III [Listeria monocytogenes FSL J2-003]
          Length = 151

 Score =  175 bits (444), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 45/147 (30%), Positives = 79/147 (53%), Gaps = 4/147 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++  L++ +G+ F +  LL++A THSS  + ++    +  ERLEFLGD +L L +S  LF
Sbjct: 3   QWEELQESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N +    EG ++    ++V   +  + A  +  + ++R+     K       ++ ADV E
Sbjct: 63  NKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA 147
           S I ALYLD GI+   TF+++    + 
Sbjct: 123 SFIGALYLDNGIDKVVTFLERVIFPKI 149


>gi|116071631|ref|ZP_01468899.1| Ribonuclease III [Synechococcus sp. BL107]
 gi|116065254|gb|EAU71012.1| Ribonuclease III [Synechococcus sp. BL107]
          Length = 251

 Score =  175 bits (444), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 62/204 (30%), Positives = 100/204 (49%), Gaps = 8/204 (3%)

Query: 21  SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
           +L+++ALTH S      +++ERLEFLGD +L L  +  + +H+ +   G  S     LVS
Sbjct: 28  NLVDEALTHISAGRG--KNFERLEFLGDAVLRLAATEFIDHHYPNLPVGSCSSLRAQLVS 85

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY--LDGGIEVAGTF 138
               +Q+  +L L SF+ +      D  +   ++ AD  E+LI A+Y   D  +E    +
Sbjct: 86  DRWLTQLGEKLQLESFLVIGPKALGDEAA-RATLHADATEALIGAIYSGSDNNLEPIHQW 144

Query: 139 VDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEI 195
           +   W+Q      +     + K+ LQEW+ A+    P Y  T +S    DP RF   V++
Sbjct: 145 LTPQWQQTTADVFATPHLFNGKSILQEWSQAEGLGLPNYITTEQSCRHGDPERFKSHVQV 204

Query: 196 SGLAPAQGMDCSKRAAEQVAAAEV 219
                A G   S++ AEQ AA+  
Sbjct: 205 GTRLGADGFGRSRKYAEQNAASNA 228


>gi|255017842|ref|ZP_05289968.1| ribonuclease III [Listeria monocytogenes FSL F2-515]
          Length = 158

 Score =  174 bits (443), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 46/147 (31%), Positives = 79/147 (53%), Gaps = 4/147 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++  L++ +G+ F N  LL++A THSS  + ++    +  ERLEFLGD +L L +S  LF
Sbjct: 3   QWEELQESVGFDFKNVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N +    EG ++    ++V   +  + A  +  + ++R+     K       ++ ADV E
Sbjct: 63  NKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSXYVRLGKGEEKAGGRTRPALLADVFE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA 147
           S I ALYLD GI+   TF+++    + 
Sbjct: 123 SFIGALYLDNGIDKVVTFLERVIFPKI 149


>gi|282881269|ref|ZP_06289955.1| ribonuclease III [Prevotella timonensis CRIS 5C-B1]
 gi|281304859|gb|EFA96933.1| ribonuclease III [Prevotella timonensis CRIS 5C-B1]
          Length = 347

 Score =  174 bits (443), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 56/226 (24%), Positives = 105/226 (46%), Gaps = 13/226 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61
           YS+L   IG+   + S  + AL H S+    +     + ERLEFLGD +L  ++  +++ 
Sbjct: 20  YSSLYNIIGFYPHDISYYKLALMHKSVMRRNAKGRPVNNERLEFLGDAVLDAIVGHIVYE 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF   +EG L+   + LV   T +++A E+ +               S  + +  +  E+
Sbjct: 80  HFPGKREGFLTNTRSKLVQRSTLNKLANEMGICKL----LLSSGRSSSHNSYVGGNAFEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178
           L+ A+YLD G +    F+        L   K      + K++L EW+     V   + + 
Sbjct: 136 LVGAIYLDRGYDACMRFMKNRILSEMLNIDKVAYKEVNFKSKLIEWSQKN-RVKIHFNLL 194

Query: 179 FRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +   ++ +P F  +VE+ G+    G   SK+ ++Q+A+   L++ 
Sbjct: 195 EQKKDENGNPIFKYLVELEGIEGCSGEGFSKKESQQLASKLTLEQL 240


>gi|88808139|ref|ZP_01123650.1| putative ribonuclease III [Synechococcus sp. WH 7805]
 gi|88788178|gb|EAR19334.1| putative ribonuclease III [Synechococcus sp. WH 7805]
          Length = 269

 Score =  174 bits (443), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 59/204 (28%), Positives = 98/204 (48%), Gaps = 6/204 (2%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           L +ALTH+S        +E+LEFLGD +L L  S  +   +     GE S     LVS  
Sbjct: 61  LNEALTHTS--SGLHPHHEQLEFLGDAVLRLAASEFIAVAYPQMPVGERSSLRAQLVSDR 118

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
             +Q+   + +  + R+      D  +  T I+A++ E+LI A+Y   G++   T++  +
Sbjct: 119 WLTQLGEAITIEEWWRIGPKASGDPTAAAT-IRAELSEALIGAMYRIAGLQAVQTWLTPH 177

Query: 143 WKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLA 199
           W++   A+ +   R ++K+ LQEW+  +    P Y  +  S    D  RF   V +    
Sbjct: 178 WQRSAEAVLADPHRGNSKSALQEWSQGRGLGLPRYACSEVSQRHGDPKRFQASVTLPPDL 237

Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223
            A G   S+R AEQ AA  ++ + 
Sbjct: 238 AADGWGGSRREAEQQAAEALMAQL 261


>gi|260910581|ref|ZP_05917245.1| ribonuclease 3 [Prevotella sp. oral taxon 472 str. F0295]
 gi|260635280|gb|EEX53306.1| ribonuclease 3 [Prevotella sp. oral taxon 472 str. F0295]
          Length = 473

 Score =  174 bits (443), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 61/227 (26%), Positives = 112/227 (49%), Gaps = 15/227 (6%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61
           YS+L + +G+   N    + AL H S+    ++    + ERLEFLGD IL  ++  +++ 
Sbjct: 20  YSSLFEILGFYPRNIGYYKLALMHKSVMRRGANGKPVNNERLEFLGDAILDAIVGDIVYR 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF   +EG L+   + LV  ET +++A+E+ ++  I           S  + +  +  E+
Sbjct: 80  HFPGKREGFLTNTRSKLVQRETLNRLAQEMGISRLIL----SSGHSSSHNSYMGGNAFEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178
           L+ A+YLD G      F++K    + +   K      + K++L EW+     V  ++ + 
Sbjct: 136 LVGAIYLDRGYASCMRFMEKRILTKMINIDKVAYKEVNFKSKLIEWSQKN-RVKLDF-IV 193

Query: 179 FRSGPDHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              G D +  P F   VE+ G+   +G   SK+ ++Q+A+   L+R 
Sbjct: 194 KEQGKDKNGSPFFLFCVELEGIEGCKGRGYSKKESQQLASKLTLERL 240


>gi|37929739|gb|AAP70361.1| ribonuclease III [Ehrlichia ruminantium]
          Length = 156

 Score =  174 bits (442), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 55/155 (35%), Positives = 86/155 (55%)

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
            +  +LV      +VA+ ++L +FI +S   R    +  +S   + +E+LI A+YLDGG+
Sbjct: 1   KKKTALVCGTKLVEVAQSINLGTFIIMSDGERTCGGANNSSNLENALEALIGAIYLDGGL 60

Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
           + A  F+  +WK  A       +DAKT LQEWA +K  + P Y +  +SGPDH+P FTV 
Sbjct: 61  KAAKNFIFLFWKNSAKHMKVPPQDAKTILQEWAQSKGLLAPSYHIVNKSGPDHNPIFTVE 120

Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           V +      Q    +K+ AEQ AA+ +L++    T
Sbjct: 121 VRMHSYETLQATGNNKKIAEQKAASLMLEKINYKT 155


>gi|303236120|ref|ZP_07322722.1| ribonuclease III [Prevotella disiens FB035-09AN]
 gi|302483702|gb|EFL46695.1| ribonuclease III [Prevotella disiens FB035-09AN]
          Length = 293

 Score =  174 bits (442), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 63/225 (28%), Positives = 111/225 (49%), Gaps = 13/225 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y ++   IG    N    + AL H S++   ++    + ERLEFLGD IL  ++  ++F 
Sbjct: 20  YLSIYHIIGILPHNLEYYKTALLHKSVARRNEKGRPINNERLEFLGDAILDAIVGDIVFQ 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           HF   +EG L+   + +V  +T +++A+++ +   I +S+       S  + +  +  E+
Sbjct: 80  HFSGKREGFLTNTRSKIVQRDTLNRLAKDMGITRLI-LSNG---RSASHNSYLGGNAFEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYK-V 177
           L+ ALYLD G      F+ K      +   K      + K++L EW   K  V  E+K +
Sbjct: 136 LVGALYLDHGYNACKKFMQKQILGELINIDKVAYKEVNFKSKLLEWTQ-KHKVEIEFKPL 194

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            F    D +P F+  V +  +A  +G   SK+ ++Q AA E ++R
Sbjct: 195 NFGKDSDGNPTFSFQVILENIACGEGKGYSKKESQQEAAKETMQR 239


>gi|119487905|ref|ZP_01621402.1| Ribonuclease III [Lyngbya sp. PCC 8106]
 gi|119455481|gb|EAW36619.1| Ribonuclease III [Lyngbya sp. PCC 8106]
          Length = 242

 Score =  174 bits (442), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 60/212 (28%), Positives = 106/212 (50%), Gaps = 11/212 (5%)

Query: 5   RYSTLEKRIGYAFAN---RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +   L +R+G +  +     LL+ ALTH SIS   + +YE+LEF+GD ++ L  S  L+ 
Sbjct: 11  QLQKLVERLGLSEQDAIQWHLLDLALTHPSIS--MEANYEQLEFVGDAVVRLAASEFLWE 68

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +     GE S   + LVS    +++A    +  ++ +     +D     +   AD +E+
Sbjct: 69  TYPKQPVGEFSAIRSVLVSDRFLAEIAESYGMGRYLLIGGSAAQDRMGEQSR-LADCLEA 127

Query: 122 LIAALYLD-GGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++AA YL    +++   +++ ++++ A  +     R++ K  LQEW  + + V PEY VT
Sbjct: 128 ILAAFYLSTHNLQLIHPWLEPHFQKGATQILRDPARQNYKAALQEWTQSHYKVLPEYTVT 187

Query: 179 FRSGPDHD-PRFTVVVEISGLAPAQGMDCSKR 209
             SGP  D  R+T  V   G    +G   S +
Sbjct: 188 -ESGPMGDEERYTAQVWFQGKPVGEGRGRSIK 218


>gi|313678609|ref|YP_004056349.1| ribonuclease III [Mycoplasma bovis PG45]
 gi|312950171|gb|ADR24766.1| ribonuclease III [Mycoplasma bovis PG45]
          Length = 224

 Score =  174 bits (441), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 112/227 (49%), Gaps = 10/227 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTH-SSISHSYQESYERLEFLGDRILGLLISTLL 59
           M+++       +      +  +  +A TH SS +++  ++Y+ LEFLGD IL   +S +L
Sbjct: 1   MNSI--ENFLNQFNIKANSLLVYRQAFTHGSSAANAKNKNYQTLEFLGDAILQFYVSAIL 58

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           FN F    +G+L++    LV  ++ + +A  L L  F+ +SS++  +       + AD+ 
Sbjct: 59  FNVFKDKNQGQLTLIRAKLVCTDSLNSIADRLKLKDFLLLSSNVVANEVLSSKKVGADIF 118

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFR-RDAKTELQEWAHAKFGVTPEYK 176
           ESL+AA+++D G+     F+DK      +  K GK   +D+KT LQE+  +    T  Y+
Sbjct: 119 ESLVAAIFIDQGMPKVKEFLDKTLLPLVKQYKEGKIELKDSKTRLQEYMQSFSKKTVFYQ 178

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                  D++  F       G     G+  SK  AE+ AA + L + 
Sbjct: 179 TYQS---DNNQ-FKSEAIYEGNVYGSGLGKSKHEAEENAANDALNKL 221


>gi|87123193|ref|ZP_01079044.1| putative ribonuclease III [Synechococcus sp. RS9917]
 gi|86168913|gb|EAQ70169.1| putative ribonuclease III [Synechococcus sp. RS9917]
          Length = 231

 Score =  174 bits (441), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 64/208 (30%), Positives = 105/208 (50%), Gaps = 9/208 (4%)

Query: 18  ANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
            +  L  L +ALTH+S        +E+LEFLGD +L L  +  + +       GE S   
Sbjct: 17  KDDELAQLNEALTHTS--SGLHPHHEQLEFLGDAVLRLAATEFIASTQPQLPMGERSALR 74

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
             LVS +  +Q+  ++ +A + ++ +    DV    T ++A++ E+LI A+Y  GG++  
Sbjct: 75  AQLVSDQWLAQLGEQIGIARWWQIGAMASGDVAGHAT-LRAELSEALIGAIYAIGGLQAV 133

Query: 136 GTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVV 192
             ++  YW+    A+ +   R ++K+ LQEW+  +    P Y     S    DP RF   
Sbjct: 134 QAWLTPYWQPTSAAVLADPHRGNSKSALQEWSQGQALGLPAYDTREASRRHGDPRRFHCR 193

Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           V +  L  A+G   S+R AEQ AAA +L
Sbjct: 194 VSLPDL-LAEGWGGSRREAEQHAAAALL 220


>gi|124026759|ref|YP_001015874.1| putative ribonuclease III [Prochlorococcus marinus str. NATL1A]
 gi|123961827|gb|ABM76610.1| putative ribonuclease III [Prochlorococcus marinus str. NATL1A]
          Length = 247

 Score =  174 bits (441), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 60/210 (28%), Positives = 108/210 (51%), Gaps = 7/210 (3%)

Query: 16  AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
              N   + ++LTHSS +     +YE LEFLGD +L L+ S  + N +   + GE S   
Sbjct: 32  KIKNILYINESLTHSSANSEI--NYENLEFLGDAVLRLIASDFIKNKYPYMQVGERSELR 89

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG-IEV 134
           + LVS +   +V +++++ + + + +   +D  +  T IQA+  E+LI ALY     +E 
Sbjct: 90  SHLVSDQWLEEVGKKIEIKNVLVIGNKALRDKSASAT-IQAEATEALIGALYESLTVLEP 148

Query: 135 AGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTV 191
              ++  +W++  + + +   +++ K+ LQE   +K    P YK T       +P RF  
Sbjct: 149 IKDWLIPFWEEKSKEVLADPHKKNYKSALQELTQSKGLSIPIYKTTEIDKKHDNPERFFC 208

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V +   + A+G   S + AE+ AA++ LK
Sbjct: 209 NVYVKNRSIAEGSGKSMKQAEKNAASKALK 238


>gi|209527991|ref|ZP_03276474.1| Ribonuclease III [Arthrospira maxima CS-328]
 gi|209491588|gb|EDZ91960.1| Ribonuclease III [Arthrospira maxima CS-328]
          Length = 246

 Score =  173 bits (440), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 63/212 (29%), Positives = 109/212 (51%), Gaps = 11/212 (5%)

Query: 5   RYSTLEKRIGYAFANR---SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +   L +R+G +   +    LL+ ALTH S+S   Q++YE+LEF+GD ++ L+ S LL  
Sbjct: 15  QLEKLIERLGLSTQQKIAWQLLDLALTHPSVS--TQDNYEQLEFVGDSVVRLVASELLLE 72

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +A  GE +   + LVS    ++++    L  ++ V     +D      S  AD  E+
Sbjct: 73  TYPNAPVGEFAAVRSILVSDRILAEISNSYGLGRYLLVGGSATRDRLGE-ESRLADCFEA 131

Query: 122 LIAALYLDGG-IEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++AALYL    +E+   ++D++  +RA    +   R++ K  LQEW  + + + P+YKV 
Sbjct: 132 VLAALYLSTNTLELIRPWLDQHLLERATDIFNDPARQNYKAALQEWTQSCYKILPQYKV- 190

Query: 179 FRSGPDHDP-RFTVVVEISGLAPAQGMDCSKR 209
             +G   D  RFT  V + G     G   + +
Sbjct: 191 NETGYAGDEARFTASVWLRGEQLGTGTGRTIK 222


>gi|313768121|ref|YP_004061552.1| hypothetical protein BpV1_122 [Bathycoccus sp. RCC1105 virus BpV1]
 gi|312599728|gb|ADQ91749.1| hypothetical protein BpV1_122 [Bathycoccus sp. RCC1105 virus BpV1]
          Length = 242

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 100/221 (45%), Gaps = 10/221 (4%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLF 60
           +   ++E  +G       L +KA  H SI    +    S+E LEF+GD +LG +I+  LF
Sbjct: 3   IDRQSVELLVGTKITKLDLYQKAFRHKSILKEDESLDGSFETLEFIGDSVLGFVITKFLF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + +++ +EG L+     LV  ET + +A +L L +++++     ++       I  DV E
Sbjct: 63  DRYENRQEGFLTKARTKLVRGETLADIATKLGLYNWVQMDEKGMRNEWFKNPKILEDVFE 122

Query: 121 SLIAALYLDGGIEVAGTFVDKYW-KQRALKSGKFRRD--AKTELQEWAHAKFGVTPEYKV 177
           +L+ A+Y+D G+  A  F+   +     +       D   K  L           PEY+V
Sbjct: 123 ALVGAIYMDLGLLHAKQFILNIYTNPEYVNMNSIMVDDNFKDHLMRHCQTNNLSLPEYRV 182

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
                   +  F + V +  +   +G   +K+ AEQ AA  
Sbjct: 183 LNHE----NGIFYIDVYVDNVFLGRGHAKNKKQAEQHAAKR 219


>gi|332291744|ref|YP_004430353.1| Ribonuclease III [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169830|gb|AEE19085.1| Ribonuclease III [Krokinobacter diaphorus 4H-3-7-5]
          Length = 245

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 105/223 (47%), Gaps = 15/223 (6%)

Query: 11  KRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             IG+        EKA TH S+    +     +YERLEFLGD +LG +I+  LFN     
Sbjct: 24  AIIGFKPKEIKYYEKAFTHRSLGLKKADGNPLNYERLEFLGDAMLGSVIAAHLFNAVQGG 83

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG L+   + +VS +  +++ R+L+L  ++R S  L         +I  ++ E+L+ A+
Sbjct: 84  NEGYLTKMRSKVVSRKHLNELGRDLNLVRYVRASIPLDNFG----VNIHGNLFEALVGAI 139

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           YLD G +    F+ K   +  +   K        K+ L EW   +   T +++    +G 
Sbjct: 140 YLDRGYKYCEKFIAKRVIEPYVDIEKLEGRIISYKSVLIEWCQKEKR-TFKFETFEDTGQ 198

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE---VLKRE 223
           D    F V + I G   A+    SK+ AE++A+       +RE
Sbjct: 199 DTVKHFGVKLFIDGKVVAKARATSKKKAEEIASKRTFYAFQRE 241


>gi|240047461|ref|YP_002960849.1| Ribonuclease III [Mycoplasma conjunctivae HRC/581]
 gi|239985033|emb|CAT05026.1| Ribonuclease III [Mycoplasma conjunctivae]
          Length = 228

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 64/224 (28%), Positives = 103/224 (45%), Gaps = 9/224 (4%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLF 60
           + +   L  ++     N  +  +ALTH S    +     YE LEFLGD I+   +S  +F
Sbjct: 6   SYQILKLLDKLEILPKNLEIYNQALTHKSYQHFNPNSSHYEMLEFLGDSIINFKVSEFIF 65

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           +  +  KEG+ S      +S+ T +++  +L L+  I+V    +       T ++ADV E
Sbjct: 66  SKINFQKEGQASQLRAKSISSLTFAKICDDLQLSDLIQVGKGAKD--ILTNTKLKADVFE 123

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTF 179
           S  AA+YLD G EV   F++KY     +++ K   +D K+E QE   +       Y+ T 
Sbjct: 124 SFCAAIYLDQGNEVLDLFLEKYLYDFVIQNAKHNNKDPKSEFQEKIQSFSTEKITYQSTK 183

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +S    D  F   +         G   S + AE  AA + L+R 
Sbjct: 184 QS----DGSFQSELIWDNQIFGVGSGKSMKEAEFNAARQALERM 223


>gi|254411633|ref|ZP_05025409.1| ribonuclease III [Microcoleus chthonoplastes PCC 7420]
 gi|196181355|gb|EDX76343.1| ribonuclease III [Microcoleus chthonoplastes PCC 7420]
          Length = 278

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 58/210 (27%), Positives = 103/210 (49%), Gaps = 10/210 (4%)

Query: 5   RYSTLEKRIGY---AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +   L +++G    A      L+ ALTH S+S     +Y++LEF+GD ++ +  S LLF 
Sbjct: 53  QLQKLVQKLGLLDNAPVQWDKLDLALTHPSMSRDV--NYDQLEFVGDAVVRMAASELLFE 110

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +A  G+ +   + LVS    +Q+A+E  L  ++ ++     D      S  AD  E+
Sbjct: 111 TYPNASVGDFAAIRSVLVSDRILAQLAQEYGLERYLLLAPSAAAD-PRGEMSRLADAFEA 169

Query: 122 LIAALYLD-GGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++ ALYL    +E+   ++D ++++    +     R++ K  LQEW  A +   PEY++T
Sbjct: 170 IVGALYLSTHTLELIRPWLDPHFQRLTEDILKDPARQNYKDALQEWTQAHYKSLPEYRLT 229

Query: 179 FRS-GPDHDPRFTVVVEISGLAPAQGMDCS 207
             +     + RFT  V   G    +G   S
Sbjct: 230 ETNPIEADENRFTAQVWFKGQQLGEGQGRS 259


>gi|149921056|ref|ZP_01909515.1| ribonuclease III [Plesiocystis pacifica SIR-1]
 gi|149818060|gb|EDM77517.1| ribonuclease III [Plesiocystis pacifica SIR-1]
          Length = 244

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 59/222 (26%), Positives = 98/222 (44%), Gaps = 16/222 (7%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIST 57
            A +   L   +G+AFA   LL  ALT  S ++  ++    S   LEF GD +L L+ + 
Sbjct: 5   EASQLDPLMATLGHAFAQPQLLRVALTVGSWANENRDAGWPSNACLEFFGDAVLDLVAAD 64

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            L+  F    EG L+    SLVS  + ++ AR +DL  +I +     +          AD
Sbjct: 65  ALWRRFPRLGEGALTRLRASLVSERSLAKAARSIDLGRWIYLGRGDEQRGARERDGTLAD 124

Query: 118 VVESLIAALYLD---GGIE---VAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFG 170
            +E+++ A +LD    G +    A    ++ + +R    + +   D K+ LQ+   A+  
Sbjct: 125 ALEAVLGAAFLDAREAGGDPSVAAAQVFERLFGERVRSLAPEDGLDPKSRLQQLVQAERR 184

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEI--SGL---APAQGMDCS 207
           +TP Y       P  DP +   VE+  +G       +G   S
Sbjct: 185 LTPVYVAIGEPPPADDPHWRARVELRPAGKPVEVLGEGEGRS 226


>gi|326330626|ref|ZP_08196930.1| ribonuclease III [Nocardioidaceae bacterium Broad-1]
 gi|325951467|gb|EGD43503.1| ribonuclease III [Nocardioidaceae bacterium Broad-1]
          Length = 183

 Score =  172 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 47/162 (29%), Positives = 78/162 (48%), Gaps = 3/162 (1%)

Query: 50  ILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS 109
           +LG++++  L+       EG+L+    ++V+A   ++V + + L   I++          
Sbjct: 1   MLGVVVTETLYRTHPDLPEGKLAKLRAAVVNARALAEVGQAIGLGQHIKLGRGEEATGGR 60

Query: 110 FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHA 167
              SI +D VE++I A++L GGIEV+   V + +     K+       D KT LQE A  
Sbjct: 61  EKASIVSDTVEAVIGAVHLSGGIEVSTVLVHRLFDPLIEKASDLGAGLDWKTSLQELAAE 120

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           +    PEY +T   GPDH   FT  V +       G+  SK+
Sbjct: 121 RALGVPEYVITDE-GPDHMKTFTAKVRVGDQLYGNGVGRSKK 161


>gi|307195788|gb|EFN77602.1| Endoribonuclease Dcr-1 [Harpegnathos saltator]
          Length = 1807

 Score =  172 bits (437), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 64/255 (25%), Positives = 99/255 (38%), Gaps = 45/255 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y  LEK IGY F + S L +A TH+S   +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1550 YEELEKSIGYKFRDSSYLLQAFTHASYQPNRLTDCYQRLEFLGDAVLDYLITRHLYEDSR 1609

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111
                G L+   ++LV+    + +A       + R +S  L   +  F+            
Sbjct: 1610 QHSPGALTDLRSALVNNTIFASLAVRCGFHKYFRHLSPGLSVVINRFVRIQEENGHSISE 1669

Query: 112  ------------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153
                                   DV ESL  A+YLD G+ +   +   Y   ++      
Sbjct: 1670 EYYLIGKEECEEAEDVEVPKALGDVFESLAGAIYLDSGMSLDAVWSVYYTIMKSEIEQFS 1729

Query: 154  RRDAKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
                K+ ++E        AKFG             D   R  V V++ G    +G+  + 
Sbjct: 1730 TNVPKSPIRELLELEPETAKFGKP-------EKLADG-RRVRVTVDVFGKGSFKGIGRNY 1781

Query: 209  RAAEQVAAAEVLKRE 223
            R A+  AA   LK+ 
Sbjct: 1782 RIAKCTAAKCALKKL 1796



 Score = 62.8 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 2/95 (2%)

Query: 14   GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
            G+   + SL+ +ALT S+ +     + ERLE +GD  L   I+T L+  +D+  EG+LS 
Sbjct: 1266 GHPGPSPSLILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYCTYDNIHEGKLSH 1323

Query: 74   RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108
              +  VS     ++ R+  L   +  +     D  
Sbjct: 1324 LRSKQVSNLNLYRLGRQKMLGESMIATKFEPHDNW 1358


>gi|300770264|ref|ZP_07080143.1| ribonuclease III [Sphingobacterium spiritivorum ATCC 33861]
 gi|300762740|gb|EFK59557.1| ribonuclease III [Sphingobacterium spiritivorum ATCC 33861]
          Length = 229

 Score =  172 bits (437), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 9/226 (3%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHF 63
            L+  +G+   N  L + A  H S++ + +E    S ERLEFLGD ILG +++ LLF  +
Sbjct: 3   KLKNLLGFVPENIRLYQMAFRHKSVATAIKEGAKNSNERLEFLGDAILGSVVAELLFKKY 62

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG L+   + +VS    +Q++R+L L   I+          +   S+  D  E+L+
Sbjct: 63  PYKDEGFLTEMRSKIVSRANLNQLSRKLGLNELIQY-DARMISFPNKQGSLLGDAFEALV 121

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKS---GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            A+YLD G     +F+     +  +          + K+ L EW     G   ++  T  
Sbjct: 122 GAVYLDKGYTFTKSFLLNRIIKTHVDIQLLEVTETNFKSRLIEWCQ-HLGKDVQFLPTAN 180

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
              +    F++   + G     G D +K++AE++AA +  +   I+
Sbjct: 181 PEGESSKMFSIEAIVEGEVCGIGRDFNKKSAEKLAAEKACEYLKIF 226


>gi|330889504|gb|EGH22165.1| ribonuclease III [Pseudomonas syringae pv. mori str. 301020]
          Length = 171

 Score =  172 bits (437), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 55/154 (35%), Positives = 77/154 (50%), Gaps = 3/154 (1%)

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F  A+EG+LS     LV  ET + +AR  DL  ++R+ S   K       SI AD +E+L
Sbjct: 1   FPQAREGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADALEAL 60

Query: 123 IAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           I A+YLD G+E A   V  +      +L      +D KT LQE+  ++    P Y+V   
Sbjct: 61  IGAIYLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACELPRYEVVDI 120

Query: 181 SGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213
            G  H   F V  EI+ L   ++G   S+R AEQ
Sbjct: 121 QGEPHCRTFFVECEINLLNEKSRGQGVSRRIAEQ 154


>gi|251772774|gb|EES53336.1| Ribonuclease III [Leptospirillum ferrodiazotrophum]
          Length = 366

 Score =  172 bits (436), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 69/231 (29%), Positives = 107/231 (46%), Gaps = 46/231 (19%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ-----ESYERLEFLGDRILGLLISTLLFN 61
            TL + +G  F +   +E+ALTH S SH         +YERLEFLGDR++GL++S  L N
Sbjct: 14  ETLIRMLGLPFKDSFRIEEALTHRSASHERGRKKPIPNYERLEFLGDRVVGLIVSEYLLN 73

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +  A EGE+   F+++VS +T + +AR +DL S++ +             S+ AD  E+
Sbjct: 74  MWPQATEGEVGQVFSTIVSTQTLASIARRMDLGSYMILGKGSNSSGERENASLLADTFEA 133

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ------RALKSGKFRR-------------------- 155
           L AA+Y + G+E     +  ++ Q      RA++S   R                     
Sbjct: 134 LTAAIYCEYGLETTRQILIPWFAQPLQEILRAIESAPPREPRRATVPEPAPSPVVTVTAP 193

Query: 156 ---------------DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
                          + K  +Q+WA   FG+ PE  +   SGP H  RF +
Sbjct: 194 RSATPSPRERPKHPPNYKLLIQKWAQQNFGLLPEVVLIEESGPSHQKRFVM 244


>gi|315225570|ref|ZP_07867380.1| ribonuclease III [Capnocytophaga ochracea F0287]
 gi|314944514|gb|EFS96553.1| ribonuclease III [Capnocytophaga ochracea F0287]
          Length = 252

 Score =  172 bits (436), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 98/224 (43%), Gaps = 9/224 (4%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFN 61
           + Y+ +++ +G+   N S   +A TH S     + ++SYERLEFLGD ILG +I+  +F 
Sbjct: 21  IFYTKIKELLGFPPKNLSYYSEAFTHPSYQFQKATRKSYERLEFLGDAILGAVIADYIFT 80

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     EG L+   + +V     +Q+ +++ L  F+R     R+       +I  ++ E+
Sbjct: 81  NAPEQDEGYLTKMRSKIVERRNLNQLGKDMRLLDFLRTKLTPRQLGN----NITGNLFEA 136

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVT 178
           LI A+YLD G +    F+++      +            K+ L EW              
Sbjct: 137 LIGAIYLDRGYKACFKFIERELILPYINIKNLEGKVISHKSLLIEWCQKHKLDFAFEAEE 196

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                     F   V + G +  +    SK+ AE++AA     +
Sbjct: 197 DIEDCSETKFFVAKVHVQGFSVTRARSTSKKKAEEIAAKRACYK 240


>gi|330982653|gb|EGH80756.1| ribonuclease III [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 176

 Score =  172 bits (436), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 56/158 (35%), Positives = 78/158 (49%), Gaps = 3/158 (1%)

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF     A+EG+LS     LV  ET + +AR  DL  ++R+ S   K       SI AD 
Sbjct: 2   LFERSPQAREGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADA 61

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           +E+LI A+YLD G+E A   V  +      +L      +D KT LQE+  ++    P Y+
Sbjct: 62  LEALIGAIYLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACELPRYE 121

Query: 177 VTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213
           V    G  H   F V  EI+ L   ++G   S+R AEQ
Sbjct: 122 VVDIQGEPHCRTFFVECEINLLNEKSRGQGVSRRIAEQ 159


>gi|256820149|ref|YP_003141428.1| ribonuclease III [Capnocytophaga ochracea DSM 7271]
 gi|256581732|gb|ACU92867.1| ribonuclease III [Capnocytophaga ochracea DSM 7271]
          Length = 252

 Score =  171 bits (435), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 98/224 (43%), Gaps = 9/224 (4%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFN 61
           + Y+ +++ +G+   N S   +A TH S     + ++SYERLEFLGD ILG +I+  +F 
Sbjct: 21  IFYTKIKELLGFPPKNLSYYSEAFTHPSYQFQKATRKSYERLEFLGDAILGAVIADYIFT 80

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     EG L+   + +V     +Q+ +++ L  F+R     R+       +I  ++ E+
Sbjct: 81  NAPEQDEGYLTKMRSKIVERRNLNQLGKDMRLLDFLRTKLTPRQLGN----NITGNLFEA 136

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVT 178
           LI A+YLD G +    F+++      +            K+ L EW              
Sbjct: 137 LIGAIYLDRGYKACFKFIERELILPYINIKNLEGKVISHKSLLIEWCQKHKLDFAFEAEE 196

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                     F   V + G +  +    SK+ AE++AA     +
Sbjct: 197 DIEDCSETKFFVAKVHVQGFSVTRARSTSKKKAEEIAAKRACYK 240


>gi|227538735|ref|ZP_03968784.1| ribonuclease III [Sphingobacterium spiritivorum ATCC 33300]
 gi|227241244|gb|EEI91259.1| ribonuclease III [Sphingobacterium spiritivorum ATCC 33300]
          Length = 229

 Score =  171 bits (435), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 9/226 (3%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHF 63
            L+  +G+   N  L + A  H S++ + +E    S ERLEFLGD ILG +++ LLF  +
Sbjct: 3   KLKNLLGFVPENVRLYQMAFRHKSVATAIKEGAKNSNERLEFLGDAILGSVVAELLFKKY 62

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG L+   + +VS    +Q++R+L L   I+          +   S+  D  E+L+
Sbjct: 63  PYKDEGFLTEMRSKIVSRANLNQLSRKLGLNELIQY-DARMISFPNKQGSLLGDAFEALV 121

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKS---GKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            A+YLD G     +F+     +  +          + K+ L EW     G   ++  T  
Sbjct: 122 GAVYLDKGYAFTKSFLLNRIIKTHVDIQLLEVTETNFKSRLIEWCQ-HLGKDVQFLPTAN 180

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
              +    F++   + G     G D +K++AE++AA +  +   I+
Sbjct: 181 PEGESSKMFSIEAIVEGEVCGIGRDFNKKSAEKLAAEKACEYLKIF 226


>gi|86134672|ref|ZP_01053254.1| ribonuclease III [Polaribacter sp. MED152]
 gi|85821535|gb|EAQ42682.1| ribonuclease III [Polaribacter sp. MED152]
          Length = 245

 Score =  171 bits (435), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 61/221 (27%), Positives = 106/221 (47%), Gaps = 12/221 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61
           Y  L+  + ++    S  +KA TH S+    S     +YERLEFLGD ILG +I++ L+ 
Sbjct: 19  YFELKTLLNFSPKKISKYKKAFTHRSVQMTDSKGNPINYERLEFLGDSILGSVIASYLYK 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
              +  EG L+   + +VS E  +++ ++L+L  F++ + D          +I  ++ E+
Sbjct: 79  KVPTGSEGYLTQMRSKIVSREHLNELGKDLELIRFVKSNIDQNTVG----DNIHGNIFEA 134

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVT 178
           L+ A+YLD G   A  F+ +      +   +        K  + EW   +     +++  
Sbjct: 135 LVGAIYLDRGYNYAQKFIYENVILPYVNIERLEGKITSYKGLIIEWCQKQKKKY-KFETY 193

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
             SG +    F+V V I G   A+G   SK+ AE+ A+  V
Sbjct: 194 EDSGNEAIKHFSVKVSIDGEQVAKGRATSKKKAEEQASKRV 234


>gi|256372281|ref|YP_003110105.1| ribonuclease III [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008865|gb|ACU54432.1| ribonuclease III [Acidimicrobium ferrooxidans DSM 10331]
          Length = 263

 Score =  171 bits (435), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 96/205 (46%), Gaps = 8/205 (3%)

Query: 18  ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
            +  ++ +AL H S S    +S ERLEFLGD ++ L++S  L+  +    EG L+   ++
Sbjct: 20  RDHPVVRQALVHKSASRDPLDSNERLEFLGDAVIELVVSDYLYRRYPDVDEGRLTQVRSA 79

Query: 78  LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137
           LVS  +   V  +  L   I V         +    + A+ VE+L  A+YL GG +++  
Sbjct: 80  LVSRRSLGSVGVQGGLLEAITVG-----QADALGPVLAANAVEALAGAVYLAGGFQLSVA 134

Query: 138 FVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
           FV          +       D K+ L +         P YKV   SGPDHD R+ VVV++
Sbjct: 135 FVLAILGPSLERVDGDLVLGDYKSLLHQALAKLHHQPPRYKV-SWSGPDHDRRYRVVVQL 193

Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVL 220
            G   A G   S++ AEQ A    +
Sbjct: 194 PGGFEAAGEGASRKEAEQEACRLAI 218


>gi|194476942|ref|YP_002049121.1| putative ribonuclease III [Paulinella chromatophora]
 gi|171191949|gb|ACB42911.1| putative ribonuclease III [Paulinella chromatophora]
          Length = 246

 Score =  171 bits (435), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 61/220 (27%), Positives = 107/220 (48%), Gaps = 10/220 (4%)

Query: 9   LEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LEK  G    NR L  +++ALTH+S       ++E+LEFLGD +L L  +  L +H+ + 
Sbjct: 22  LEKLDGINLRNRDLAMVDEALTHTSA--ELGINHEKLEFLGDAVLRLAAAEHLLSHYPTL 79

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
             G+ S     LVS    +++     + + IR+ +    D  +   +++A+  E+LI AL
Sbjct: 80  SVGQSSALRAQLVSDRWLAEIGESCGIETVIRIGAAASGDQAA-RQTLRAESTEALIGAL 138

Query: 127 Y--LDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           Y   +  +E    ++  +W++ ++   +  +  + K+ LQEW+ A+    P Y+    + 
Sbjct: 139 YSSWENSLEPVNHWLSLHWQRSSIALLTDPYCYNWKSALQEWSQAEGLGLPNYRSKEINR 198

Query: 183 PDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              D  RF   V I      +G   ++R AEQ AA   L 
Sbjct: 199 LHGDLSRFHSCVFIETKYLGEGFGGARREAEQQAARSALN 238


>gi|282901412|ref|ZP_06309337.1| Ribonuclease III [Cylindrospermopsis raciborskii CS-505]
 gi|281193691|gb|EFA68663.1| Ribonuclease III [Cylindrospermopsis raciborskii CS-505]
          Length = 238

 Score =  171 bits (435), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 111/223 (49%), Gaps = 12/223 (5%)

Query: 5   RYSTLEKRIGYA---FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +  +L +++G +        LL+ ALTH ++S S   +YE+LEF+GD ++ L+ + +L+ 
Sbjct: 11  QLESLIQKLGLSANSPIKWPLLDLALTHPTVSESA--NYEQLEFVGDAVVRLVAAVVLWE 68

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +     G+ +   + LVS    +++ARE  L  ++ V+     D      S  AD  E+
Sbjct: 69  SYPDCCVGDFAAIRSVLVSDRILARLAREYGLELYLLVAGSATADNVGQ-ESRLADAFEA 127

Query: 122 LIAALYLD-GGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           L+ ALYL    + +   ++D ++++    ++    + + K  LQEW  A + V PEY+V 
Sbjct: 128 LLGALYLSTQNLILIRPWLDPHFQELAEQIRLDPAKLNYKAALQEWTQAGYKVLPEYRVV 187

Query: 179 FRSGP--DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
             + P   H+  F   V +      QG   S +AAEQ AA   
Sbjct: 188 EVNQPQNPHER-FLAQVWLHEKILGQGKGRSIKAAEQEAAKVA 229


>gi|294155354|ref|YP_003559738.1| ribonuclease III [Mycoplasma crocodyli MP145]
 gi|291600141|gb|ADE19637.1| ribonuclease III [Mycoplasma crocodyli MP145]
          Length = 223

 Score =  171 bits (434), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 60/226 (26%), Positives = 104/226 (46%), Gaps = 8/226 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTL 58
           +     +           N  +  +A+THSS   S  +   YERLEFLGD ++  ++S+ 
Sbjct: 2   LKCSNLTEFFHIHEIEPNNTKIYLQAITHSSFFSSSNKKNSYERLEFLGDSVIQFVVSSE 61

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           LF   D   +G+++     +V AET + ++  + L   ++ +    ++     T IQ DV
Sbjct: 62  LF-KMDDLNQGKMTELRAKVVRAETLASISIAIGLIDILKTAPGGSQETIKNSTKIQCDV 120

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKV 177
            E+++ A+Y+D G+++A  FV K+ KQ    + +   +D K+ LQE+         +Y V
Sbjct: 121 FEAIVGAIYVDQGLDIAYNFVFKFIKQYINGARQVENKDPKSRLQEYFQNFSKENIKYNV 180

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                   +  F       G     G   SK+ AE  AA + LK+ 
Sbjct: 181 NQL----PNKIFQARAIHEGSVYGMGQGYSKKEAEIEAAIDALKKL 222


>gi|332020119|gb|EGI60563.1| Endoribonuclease Dcr-1 [Acromyrmex echinatior]
          Length = 1979

 Score =  171 bits (434), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 64/255 (25%), Positives = 99/255 (38%), Gaps = 45/255 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y  LEK IGY F + S L +A TH+S   +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1721 YEELEKSIGYKFRDSSYLLQAFTHASYQPNRLTDCYQRLEFLGDAVLDYLITRHLYEDSR 1780

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111
                G L+   ++LV+    + +A       + R +S  L   +  F+            
Sbjct: 1781 QHSPGALTDLRSALVNNTIFASLAVRCGFHKYFRHLSPGLSVVINRFVRIQEENGHSISE 1840

Query: 112  ------------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153
                                   DV ESL  A+YLD G+ +   +   Y   ++      
Sbjct: 1841 EYYLIGEEECEEAEDVEVPKALGDVFESLAGAIYLDSGMSLDAVWSVYYTIMKSEIEQFS 1900

Query: 154  RRDAKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
                K+ ++E        AKFG             D   R  V V++ G    +G+  + 
Sbjct: 1901 TNVPKSPIRELLELEPETAKFGRP-------EKLADG-RRVRVTVDVFGKGSFKGIGRNY 1952

Query: 209  RAAEQVAAAEVLKRE 223
            R A+  AA   LK+ 
Sbjct: 1953 RIAKCTAAKCALKKL 1967



 Score = 62.8 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 2/95 (2%)

Query: 14   GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
            G++  + SL+ +ALT S+ +     + ERLE +GD  L   I+T L+  +D+  EG+LS 
Sbjct: 1437 GHSGPSPSLILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYCTYDNIHEGKLSH 1494

Query: 74   RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108
              +  VS     ++ R+  L   +  +     D  
Sbjct: 1495 LRSKQVSNLNLYRLGRQKMLGESMIATKFEPHDNW 1529


>gi|319952824|ref|YP_004164091.1| rnase iii [Cellulophaga algicola DSM 14237]
 gi|319421484|gb|ADV48593.1| RNAse III [Cellulophaga algicola DSM 14237]
          Length = 245

 Score =  171 bits (433), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 56/216 (25%), Positives = 101/216 (46%), Gaps = 12/216 (5%)

Query: 11  KRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + +G+     ++ +KA  H S +         +YERLEFLGD +LG +IS  L+    + 
Sbjct: 24  RILGFKPKKLAVYKKAFLHRSANIRDEDGTPMNYERLEFLGDSMLGTIISKYLYTEVPTG 83

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG L+   + +VS E  +++ +EL+L  ++    + R     F  +I  +V E+L+ A+
Sbjct: 84  DEGYLTKMRSKIVSREHLNELGKELNLIHYV----ESRIPKSHFGDNIHGNVYEALVGAI 139

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           YLD G +    F+ K      +   +        K+ L EW   +   +  Y +   +G 
Sbjct: 140 YLDRGYKYCEKFIHKSVIVPYVDIEQLEGKVISYKSLLIEWCQKQKK-SFYYDIYEDTGN 198

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           D    F V + I+    ++    SK+ AE++A+   
Sbjct: 199 DAVKHFAVKLHINKKIVSKARATSKKKAEEIASKRA 234


>gi|332706107|ref|ZP_08426179.1| RNAse III [Lyngbya majuscula 3L]
 gi|332355199|gb|EGJ34667.1| RNAse III [Lyngbya majuscula 3L]
          Length = 237

 Score =  171 bits (433), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 64/212 (30%), Positives = 107/212 (50%), Gaps = 14/212 (6%)

Query: 5   RYSTLEKRIGY---AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +   L +++G       N SLL+ ALTH SIS    ++YE+LEF+GD ++ L  S  L+ 
Sbjct: 11  QLEKLVQKLGLSKTTAVNWSLLDLALTHCSISAE--DNYEQLEFVGDAVIRLASSEWLWE 68

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           ++ ++  GE +   + LVS    SQ+AR   L  ++ VS+    D     TS  AD  E+
Sbjct: 69  NYPNSSVGEFAAIRSVLVSDRILSQLARSYGLERYLLVSNSAAGDKVGE-TSRLADAFEA 127

Query: 122 LIAALYLD-GGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++ ALYL    +E+   ++D + ++    ++    R++ K  LQEW  A + + P+Y +T
Sbjct: 128 ILGALYLSTHTLELVRPWLDPHLQKLTTEIRQDPARQNYKDALQEWTQAHYKLLPKYHLT 187

Query: 179 F---RSGPDHDPRFTVVVEISGLAPAQGMDCS 207
                 G   + RFT  V +      +G   S
Sbjct: 188 ENLQVHGA--NNRFTAQVWLQNRQLGEGTGRS 217


>gi|307190121|gb|EFN74275.1| Endoribonuclease Dcr-1 [Camponotus floridanus]
          Length = 1976

 Score =  171 bits (433), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 64/255 (25%), Positives = 99/255 (38%), Gaps = 45/255 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y  LEK IGY F + S L +A TH+S   +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1717 YDELEKSIGYKFRDSSYLLQAFTHASYQPNRLTDCYQRLEFLGDAVLDYLITRHLYEDSR 1776

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111
                G L+   ++LV+    + +A       + R +S  L   +  F+            
Sbjct: 1777 QHSPGALTDLRSALVNNTIFASLAVRCGFHKYFRHLSPGLSVVINRFVRIQEENGHSISE 1836

Query: 112  ------------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153
                                   DV ESL  A+YLD G+ +   +   Y   ++      
Sbjct: 1837 EYYLIGEEECEEAEDVEVPKALGDVFESLAGAIYLDSGMSLDAVWSVYYTIMKSEIEQFS 1896

Query: 154  RRDAKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
                K+ ++E        AKFG             D   R  V V++ G    +G+  + 
Sbjct: 1897 TNVPKSPIRELLELEPETAKFGRP-------EKLADG-RRVRVTVDVFGKGSFKGIGRNY 1948

Query: 209  RAAEQVAAAEVLKRE 223
            R A+  AA   LK+ 
Sbjct: 1949 RIAKCTAAKCALKKL 1963



 Score = 62.0 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 2/89 (2%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             SL+ +ALT S+ +     + ERLE +GD  L   I+T L+  +D+  EG+LS   +  V
Sbjct: 1439 PSLILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYCTYDNIHEGKLSHLRSKQV 1496

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDVC 108
            S     ++ R+  L   +  +     D  
Sbjct: 1497 SNLNLYRLGRQKMLGESMIATKFEPHDNW 1525


>gi|213963479|ref|ZP_03391733.1| ribonuclease III [Capnocytophaga sputigena Capno]
 gi|213953887|gb|EEB65215.1| ribonuclease III [Capnocytophaga sputigena Capno]
          Length = 252

 Score =  171 bits (433), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 98/224 (43%), Gaps = 9/224 (4%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFN 61
           + Y+ ++  +G+A  N S   +A TH S     + ++SYERLEFLGD ILG +I+  +F 
Sbjct: 21  IFYNKIKNLLGFAPKNLSYYSEAFTHPSYQFQKATRKSYERLEFLGDAILGAVIADYIFT 80

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     EG L+   + +V     +Q+ +++ L  F+R     R+       +I  ++ E+
Sbjct: 81  NAPEQDEGYLTKMRSKIVERRNLNQLGKDMGLLDFLRTKLTPRQLGN----NITGNLFEA 136

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVT 178
           LI A+YLD G +    F+++      +            K+ L EW              
Sbjct: 137 LIGAIYLDRGYKACFRFIERELILPHINIKNLEGKVISHKSLLIEWCQKHKLDFAFEAEE 196

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                     F   V + G +  +    SK+ AE++AA     +
Sbjct: 197 DMEDRSETKYFVAKVHVQGFSVTRARSTSKKKAEEIAAKRACYK 240


>gi|62320294|dbj|BAD94606.1| CAF protein [Arabidopsis thaliana]
          Length = 690

 Score =  171 bits (433), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 63/237 (26%), Positives = 103/237 (43%), Gaps = 30/237 (12%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           + ++ +  LE+ + Y F  + LL +A+TH+S   S    Y+RLEF+GD +L  LI+  LF
Sbjct: 335 LKSIDFVRLERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 394

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-LRKDVCSFM-------- 111
             + S   G L+    + V+ E  ++VA +  L  ++R  S  L K +  F+        
Sbjct: 395 FTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESS 454

Query: 112 --------------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRD 156
                           +  D+VES+  A++LD G +    + V +   Q  +        
Sbjct: 455 KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMH 514

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
              ELQE    +     EYK   RSG       TV V I G+      +  K+ A++
Sbjct: 515 PVRELQERCQQQAEGL-EYKA-SRSGN----TATVEVFIDGVQVGVAQNPQKKMAQK 565



 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 3/91 (3%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            L+  I Y      +L +ALT +S   ++   YER E LGD  L  ++S  LF  +    
Sbjct: 126 QLKNLISYPIPTSKIL-EALTAASCQETF--CYERAELLGDAYLKWVVSRFLFLKYPQKH 182

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIR 98
           EG+L+     +VS     Q A    L S+I+
Sbjct: 183 EGQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 213



 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 6/67 (8%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGMD---CSKRAAEQV 214
           L +    K    P Y+     GP H  RFT  V ++        + +     S + A+  
Sbjct: 617 LNDICLRKNWPMPSYRCVKEGGPAHAKRFTFGVRVNTSDRGWTDECIGEPMPSVKKAKDS 676

Query: 215 AAAEVLK 221
           AA  +L+
Sbjct: 677 AAVLLLE 683


>gi|258648277|ref|ZP_05735746.1| ribonuclease III [Prevotella tannerae ATCC 51259]
 gi|260852193|gb|EEX72062.1| ribonuclease III [Prevotella tannerae ATCC 51259]
          Length = 284

 Score =  170 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 58/226 (25%), Positives = 100/226 (44%), Gaps = 13/226 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           Y  +   +G+   +      A  HSS  +  +     + ERLEFLGD +L +++S ++F 
Sbjct: 20  YRKVYNILGFYPHDIEYYRIAFAHSSSEYKGRNGRTVNNERLEFLGDAVLEMVVSDIVFR 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F+  +EG L+   + +V   T +Q+A E  ++  +R S        S  ++I  +  E+
Sbjct: 80  RFERKREGFLTGTRSKIVQRATLNQLAEETGISKLLRTS----MRATSHNSNIGGNAFEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVT 178
              ALYLD G   A  F  K      +      +   + K++L EW+        E+K+ 
Sbjct: 136 FFGALYLDRGYRAAYRFFAKRILGVHINLEAVAKKEENFKSKLLEWSQKNRLRA-EFKLD 194

Query: 179 FRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                  + P F   V + GL   +G   SK+ ++Q AA   L + 
Sbjct: 195 RTENNASNGPVFYTTVRLEGLEAGKGSGYSKKESQQKAAKAALMKL 240


>gi|242076428|ref|XP_002448150.1| hypothetical protein SORBIDRAFT_06g022180 [Sorghum bicolor]
 gi|241939333|gb|EES12478.1| hypothetical protein SORBIDRAFT_06g022180 [Sorghum bicolor]
          Length = 698

 Score =  170 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 58/244 (23%), Positives = 102/244 (41%), Gaps = 24/244 (9%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+ +  S LE+ IGY F ++ LL +A  H S +      Y+R+EFLGD +L  L+++ L+
Sbjct: 247 MNYMNISELEELIGYTFKHKGLLLQAFVHPSFNKHSGGCYQRMEFLGDAVLDYLMASYLY 306

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFM-------- 111
           + +   K G+L+   +  ++  + + VA +  +  ++   S  L   +  F         
Sbjct: 307 SAYPDLKPGQLTDLKSLALNNNSFAYVAVKKSIHKYLIKDSKSLTAAINKFQNYVNLSSS 366

Query: 112 ----------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTE 160
                       +  D+VES + A+ LD G  +   + +     +  L       D   E
Sbjct: 367 EKDLLEEPTCPKVLGDIVESCVGAVLLDSGFNLNHVWKLMLMLLKPILSFCGMHIDPMRE 426

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEV 219
           L+E            K T  +G  H     V V I G   +    + + + A +VAA E 
Sbjct: 427 LREICQYNGFELGLPKPTEDNGEFHVK---VEVNIDGKMISCTAANRNSKDARKVAAQEA 483

Query: 220 LKRE 223
           L + 
Sbjct: 484 LLKL 487



 Score = 57.4 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 50/140 (35%), Gaps = 40/140 (28%)

Query: 41  ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-- 98
           ERLE LGD  L  ++    F  ++   EG+L+ R + +VS     +++   +L  +IR  
Sbjct: 81  ERLEVLGDAFLKYVVGRHNFISYEGLDEGQLTRRRSDIVSNSNLYELSIRRNLQVYIRDQ 140

Query: 99  ---------VSSDLRKDVCSFMTSIQ-----------------------------ADVVE 120
                    +    +        +                               ADVVE
Sbjct: 141 HFEPTQFFALGRPCKVVCNPDREATLHPKNIDPDRRENCNLRCTKSHHWLHRKTIADVVE 200

Query: 121 SLIAALYLDGGIEVAGTFVD 140
           SL+ A  ++ G + A  F+ 
Sbjct: 201 SLLGAFLVECGFKAAFAFLR 220



 Score = 41.2 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 24/52 (46%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
           QR       R+ A++ L E   A +   P++++    GP H  +FT  V I 
Sbjct: 600 QREYHGDMVRKTARSFLYELCAANYWKPPDFELCKGEGPSHLRKFTCKVLIQ 651


>gi|332878384|ref|ZP_08446107.1| ribonuclease III [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332683649|gb|EGJ56523.1| ribonuclease III [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 262

 Score =  170 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 59/224 (26%), Positives = 96/224 (42%), Gaps = 9/224 (4%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFN 61
           + Y+ ++  +GYA  N S   +A TH S  +    ++SYERLEFLGD ILG +I+  +F 
Sbjct: 31  IFYNKMKDLLGYAPKNLSFYSEAFTHPSYQYQKATRKSYERLEFLGDAILGAVIADYIFT 90

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +     EG L+   + +V     +Q+  EL L SF+R     +        +I  ++ E+
Sbjct: 91  NAPEQDEGYLTKMRSKIVERRNLNQLGEELQLLSFLRT----KLTPKQLGNNITGNLFEA 146

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVT 178
           LI A+YLD G +    F+++      +            K+ L EW              
Sbjct: 147 LIGAIYLDKGYKTCFKFIERKLILPYINIKNLEEKVISHKSLLIEWCQKHKRDFSFEAEE 206

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                     F   V + G +  +    SK+ AE+ AA     +
Sbjct: 207 DVEDRSETKYFVAKVYVEGFSVTRARATSKKRAEESAAKRTCYK 250


>gi|47225092|emb|CAF98719.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 290

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 63/193 (32%), Positives = 95/193 (49%), Gaps = 8/193 (4%)

Query: 37  QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96
               +R+EFLGD I+ L+ +  LF HF    EG L++  +SLV+  T ++VA EL +  F
Sbjct: 57  SGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEF 116

Query: 97  IRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFR 154
             +++D  K      T   AD++ES IAALY+D  +E   TF++  +  R  +    +  
Sbjct: 117 A-ITNDKTKRPVVLRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDW 175

Query: 155 RDAKTELQEWA-----HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            D K++LQ+         K    P YK     GP H   +TV V   G     G   S +
Sbjct: 176 NDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGDRIGCGKGPSIQ 235

Query: 210 AAEQVAAAEVLKR 222
            AE  AA + L++
Sbjct: 236 QAEMGAAMDALEK 248


>gi|110520367|gb|ABG74922.1| Dicer-like 1b protein [Physcomitrella patens]
          Length = 1695

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 58/247 (23%), Positives = 100/247 (40%), Gaps = 30/247 (12%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            M ++ +S+L+K +G+ F  RSLL +A+TH+S        Y+RLEF+GD +L  LI+  LF
Sbjct: 1339 MRSIDFSSLQKNVGHEFRERSLLVEAITHASRPSLGVPCYQRLEFVGDAVLDHLITRYLF 1398

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM--------- 111
              + +   G L+    + V+ E  ++VA +      +R  S   +               
Sbjct: 1399 FKYTNLPPGRLTDLRAAAVNNENFARVAVKHSYHLHLRHGSTALETQIRNFVNDIHSELD 1458

Query: 112  --------------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRD 156
                            +  D+ ES+  AL+LD  ++    + V +   Q  +        
Sbjct: 1459 KPGVNSFGLGDFKAPKVLGDIFESIAGALFLDARLDTHQVWKVFEPLLQPMVSPETLPIH 1518

Query: 157  AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
                LQE    +     EYKV+           TV V + G+         K+ A+++ A
Sbjct: 1519 PVRGLQERCQQEAEGL-EYKVSRAESVA-----TVEVYVDGVQIGSTQSAQKKMAQKLGA 1572

Query: 217  AEVLKRE 223
               L + 
Sbjct: 1573 RNALVKL 1579



 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 26   ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85
            ALT +S       SYER E L D  L  ++S  LF  F S  EG+L+     +VS     
Sbjct: 1136 ALTAAS--GQETFSYERAELLSDAYLEWVVSHRLFLKFPSKHEGQLTRMRQKIVSNSVLY 1193

Query: 86   QVARELDLASFIR 98
            Q A E  L S+I+
Sbjct: 1194 QHALEKGLQSYIQ 1206



 Score = 42.4 bits (99), Expect = 0.047,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 15/32 (46%)

Query: 164  WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
                +    P+YK    SGP H  +FT+ V +
Sbjct: 1617 LCLKRQWPMPQYKCVLESGPAHAKKFTLSVRV 1648


>gi|189502546|ref|YP_001958263.1| hypothetical protein Aasi_1206 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497987|gb|ACE06534.1| hypothetical protein Aasi_1206 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 241

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 53/210 (25%), Positives = 96/210 (45%), Gaps = 7/210 (3%)

Query: 16  AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
              N SL   AL HSS +   + S ERLEFLGD +L L+++  LF  +   +EG L+   
Sbjct: 34  HPHNLSLYRLALQHSS-AKIEENSNERLEFLGDAVLSLVVAEYLFKKYPLQEEGFLTEIR 92

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
           + +V+  +  ++A+ + +   +    D R      +  +  + +E+ I A+YLD G  + 
Sbjct: 93  SRIVNRASLGELAKRIGMDELLTY--DTRSVNHHNIKFVYGNALEAFIGAVYLDQGYALC 150

Query: 136 GTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
             F+     +  +          + K+++  WA        ++ +           F V 
Sbjct: 151 AQFIVDRLLKIHVDLETIVLTDNNYKSKIIAWAQKNRK-HIQFILITEKRIKGVREFVVQ 209

Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           + + G    +G+  +K+ AEQ+AA E LKR
Sbjct: 210 LLLEGEVYGEGVGKTKKQAEQMAAQESLKR 239


>gi|332189100|gb|AEE27221.1| endoribonuclease Dicer [Arabidopsis thaliana]
          Length = 1910

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 63/237 (26%), Positives = 103/237 (43%), Gaps = 30/237 (12%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            + ++ +  LE+ + Y F  + LL +A+TH+S   S    Y+RLEF+GD +L  LI+  LF
Sbjct: 1555 LKSIDFVGLERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 1614

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-LRKDVCSFM-------- 111
              + S   G L+    + V+ E  ++VA +  L  ++R  S  L K +  F+        
Sbjct: 1615 FTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESS 1674

Query: 112  --------------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRD 156
                            +  D+VES+  A++LD G +    + V +   Q  +        
Sbjct: 1675 KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMH 1734

Query: 157  AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
               ELQE    +     EYK   RSG       TV V I G+      +  K+ A++
Sbjct: 1735 PVRELQERCQQQAEGL-EYKA-SRSGN----TATVEVFIDGVQVGVAQNPQKKMAQK 1785



 Score = 71.6 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 3/91 (3%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             L+  I Y      +L +ALT +S   ++   YER E LGD  L  ++S  LF  +    
Sbjct: 1346 QLKNLISYPIPTSKIL-EALTAASCQETF--CYERAELLGDAYLKWVVSRFLFLKYPQKH 1402

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIR 98
            EG+L+     +VS     Q A    L S+I+
Sbjct: 1403 EGQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 1433



 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 6/67 (8%)

Query: 161  LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGMD---CSKRAAEQV 214
            L +    K    P Y+     GP H  RFT  V ++        + +     S + A+  
Sbjct: 1837 LNDICLRKNWPMPSYRCVKEGGPAHAKRFTFGVRVNTSDRGWTDECIGEPMPSVKKAKDS 1896

Query: 215  AAAEVLK 221
            AA  +L+
Sbjct: 1897 AAVLLLE 1903


>gi|15223286|ref|NP_171612.1| DCL1 (DICER-LIKE 1); ATP-dependent helicase/ double-stranded RNA
            binding / protein binding / ribonuclease III [Arabidopsis
            thaliana]
 gi|34922211|sp|Q9SP32|DCL1_ARATH RecName: Full=Endoribonuclease Dicer homolog 1; AltName:
            Full=Dicer-like protein 1; Short=AtDCL1; AltName:
            Full=Protein ABNORMAL SUSPENSOR 1; AltName: Full=Protein
            CARPEL FACTORY; AltName: Full=Protein SHORT INTEGUMENTS
            1; AltName: Full=Protein SUSPENSOR 1
 gi|11559645|gb|AAG38019.1|AF292940_1 short integuments 1 [Arabidopsis thaliana]
 gi|11559647|gb|AAG38020.1|AF292941_1 short integuments 1 [Arabidopsis thaliana]
 gi|332189099|gb|AEE27220.1| endoribonuclease Dicer [Arabidopsis thaliana]
          Length = 1909

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 63/237 (26%), Positives = 103/237 (43%), Gaps = 30/237 (12%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            + ++ +  LE+ + Y F  + LL +A+TH+S   S    Y+RLEF+GD +L  LI+  LF
Sbjct: 1554 LKSIDFVGLERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 1613

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-LRKDVCSFM-------- 111
              + S   G L+    + V+ E  ++VA +  L  ++R  S  L K +  F+        
Sbjct: 1614 FTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESS 1673

Query: 112  --------------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRD 156
                            +  D+VES+  A++LD G +    + V +   Q  +        
Sbjct: 1674 KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMH 1733

Query: 157  AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
               ELQE    +     EYK   RSG       TV V I G+      +  K+ A++
Sbjct: 1734 PVRELQERCQQQAEGL-EYKA-SRSGN----TATVEVFIDGVQVGVAQNPQKKMAQK 1784



 Score = 71.3 bits (174), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 3/91 (3%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             L+  I Y      +L +ALT +S   ++   YER E LGD  L  ++S  LF  +    
Sbjct: 1345 QLKNLISYPIPTSKIL-EALTAASCQETF--CYERAELLGDAYLKWVVSRFLFLKYPQKH 1401

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIR 98
            EG+L+     +VS     Q A    L S+I+
Sbjct: 1402 EGQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 1432



 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 6/67 (8%)

Query: 161  LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGMD---CSKRAAEQV 214
            L +    K    P Y+     GP H  RFT  V ++        + +     S + A+  
Sbjct: 1836 LNDICLRKNWPMPSYRCVKEGGPAHAKRFTFGVRVNTSDRGWTDECIGEPMPSVKKAKDS 1895

Query: 215  AAAEVLK 221
            AA  +L+
Sbjct: 1896 AAVLLLE 1902


>gi|30350181|gb|AAP31489.1| putative ribonuclease III [Western X phytoplasma]
          Length = 228

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 54/207 (26%), Positives = 85/207 (41%), Gaps = 7/207 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYE---RLEFLGDRILGLLISTLLF 60
           +    L KR+     N SL   ALTHSS ++     +    RLEFLGD ++   +++ L+
Sbjct: 1   MSIKQLFKRLNIKPKNISLFINALTHSSYANENNAKHNNNERLEFLGDSVINFFMASYLY 60

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            +     EG ++ +    V  ++    A E+ L  +I +    +K       SI  D  E
Sbjct: 61  KNNKD-DEGVMTKKRAQAVCVDSLLIYAEEIQLKKYIYLGKGEKKRSV-HNYSIVTDAFE 118

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +L  A+YLD G + A     +      L       D KT+LQE    K      YK+   
Sbjct: 119 ALFGAIYLDLGFKQAQKTFYQVVLP-CLNKIINIIDFKTQLQELVQTK-KQNITYKIISE 176

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCS 207
            G  H+  F   V +      +G   +
Sbjct: 177 KGLAHEKEFVSEVYLGKEWLGKGNGKT 203


>gi|6102610|gb|AAF03534.1|AF187317_1 CAF protein [Arabidopsis thaliana]
          Length = 1909

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 63/237 (26%), Positives = 103/237 (43%), Gaps = 30/237 (12%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            + ++ +  LE+ + Y F  + LL +A+TH+S   S    Y+RLEF+GD +L  LI+  LF
Sbjct: 1554 LKSIDFVGLERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 1613

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-LRKDVCSFM-------- 111
              + S   G L+    + V+ E  ++VA +  L  ++R  S  L K +  F+        
Sbjct: 1614 FTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESS 1673

Query: 112  --------------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRD 156
                            +  D+VES+  A++LD G +    + V +   Q  +        
Sbjct: 1674 KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMH 1733

Query: 157  AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
               ELQE    +     EYK   RSG       TV V I G+      +  K+ A++
Sbjct: 1734 PVRELQERCQQQAEGL-EYKA-SRSGN----TATVEVFIDGVQVGVAQNPQKKMAQK 1784



 Score = 71.3 bits (174), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 3/91 (3%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             L+  I Y      +L +ALT +S   ++   YER E LGD  L  ++S  LF  +    
Sbjct: 1345 QLKNLISYPIPTSKIL-EALTAASCQETF--CYERAELLGDAYLKWVVSRFLFLKYPQKH 1401

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIR 98
            EG+L+     +VS     Q A    L S+I+
Sbjct: 1402 EGQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 1432



 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 6/67 (8%)

Query: 161  LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGMD---CSKRAAEQV 214
            L +    K    P Y+     GP H  RFT  V ++        + +     S + A+  
Sbjct: 1836 LNDICLRKNWPMPSYRCVKEGGPAHAKRFTFGVRVNTSDRGWTDECIGEPMPSVKKAKDS 1895

Query: 215  AAAEVLK 221
            AA  +L+
Sbjct: 1896 AAVLLLE 1902


>gi|282897359|ref|ZP_06305361.1| Ribonuclease III [Raphidiopsis brookii D9]
 gi|281198011|gb|EFA72905.1| Ribonuclease III [Raphidiopsis brookii D9]
          Length = 240

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 65/223 (29%), Positives = 112/223 (50%), Gaps = 12/223 (5%)

Query: 5   RYSTLEKRIGYA---FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +  +L +++G +        LL+ ALTH ++S S   +YE+LEF+GD ++ L+ + +L+ 
Sbjct: 11  QLESLIQKLGLSANSPIKWPLLDLALTHPTVSESA--NYEQLEFVGDAVVRLVAAVVLWE 68

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +     G+ +   + LVS    +++ARE DL  ++ V+     D      S  AD  E+
Sbjct: 69  SYPDCCVGDFAAIRSVLVSDRILARLAREYDLELYLLVAGSATADNVGQ-ESRLADAFEA 127

Query: 122 LIAALYLD-GGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           L+ ALYL    + +   ++D ++++    ++    R + K  LQEW  A + V PEY+V 
Sbjct: 128 LLGALYLSTQNLILIRPWLDPHFQELAEQIRLDPARLNYKAALQEWTQAGYKVLPEYRVV 187

Query: 179 F--RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
              +S   H+  F   V +      QG   S +AAEQ AA   
Sbjct: 188 EVNQSQNAHER-FLAQVWLHEKILGQGKGRSIKAAEQEAAKVA 229


>gi|313675278|ref|YP_004053274.1| RNAse iii [Marivirga tractuosa DSM 4126]
 gi|312941976|gb|ADR21166.1| RNAse III [Marivirga tractuosa DSM 4126]
          Length = 243

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 105/227 (46%), Gaps = 11/227 (4%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFN 61
            + ++  +GY      L      HSS++    + ++ S ERLE+LGD ILG +++  LF 
Sbjct: 20  VAAVKSIVGYKPFRLELFRLVTQHSSVAKTLPNGFRASNERLEYLGDAILGAVVADYLFK 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +    EG L+   + +V+ E+ S +A+++ ++  +   SD  +    F  SI  D++E+
Sbjct: 80  KYPFKDEGFLTEIRSRIVNRESLSLLAKKIGISQMLE--SDFSRSRYHFK-SIYGDMMEA 136

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVT 178
            I A+Y+D G +    F+            +      + K+ L EW+  +   +  + + 
Sbjct: 137 FIGAVYIDRGYKYCQKFIINKLLIPHFDLDEIIENNTNYKSILIEWSQKENK-SIRFDIE 195

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            +        F   + ++    ++G   +K+ AEQ AA +  ++  +
Sbjct: 196 DQKQEGSKKEFRAAIFVNSEKISKGAGLNKKKAEQNAAFKACRKLNL 242


>gi|58040241|ref|YP_192205.1| ribonuclease III [Gluconobacter oxydans 621H]
 gi|58002655|gb|AAW61549.1| Ribonuclease III [Gluconobacter oxydans 621H]
          Length = 174

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 56/170 (32%), Positives = 89/170 (52%), Gaps = 1/170 (0%)

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
           ++  L   +   +EG L  R   LVS    +++A ++ L++ +++S          ++SI
Sbjct: 1   MAEWLLERYPDEQEGALGPRHAHLVSRTVLAEIADQVGLSASLQISPHEEDAGIRRLSSI 60

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174
           +AD +E+L+ ALYLDGG+E A   V +YW+ R   + +  ++ KT LQE+  ++    P 
Sbjct: 61  RADAMEALLGALYLDGGLEPARRVVHQYWQSRIESADRPHKEPKTLLQEYMLSQGLPLPH 120

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           Y++    GP H P F V V   G     G   SKR AE  AA  +LK  G
Sbjct: 121 YELLSSDGPSHAPVFRVSVTTMGHT-GTGEAGSKRLAESAAATALLKHLG 169


>gi|86608239|ref|YP_477001.1| ribonuclease III [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556781|gb|ABD01738.1| ribonuclease III [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 240

 Score =  169 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 62/218 (28%), Positives = 97/218 (44%), Gaps = 22/218 (10%)

Query: 6   YSTLEKRIGYAFANRSLLEK--------ALTHSSISHSYQESYERLEFLGDRILGLLIST 57
              L  R+G  F + +LLE+        AL H S+    + + +RLE LGD +L +L++ 
Sbjct: 12  LEHLLARLG--FRDPALLEQLRWDLLDQALIHPSL--DGRRNNDRLELLGDSVLRILVTE 67

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQA 116
            LF  +     GEL+   + L S    +++A    L  ++ V S  + D          A
Sbjct: 68  FLFQSYPHLSVGELTAIRSDLTSDAYLAELADLHGLDRYLEVGSSSQNDLAGRGRR--LA 125

Query: 117 DVVESLIAALYLDGGIEV---AGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGV 171
           D  E+L+ A YL  GI        ++D Y  +R  +      RR+ K  LQE     +G 
Sbjct: 126 DAFEALLGAFYLSWGIYTLPRLHPWLDPYLHRRVEQWFQDPTRRNPKAALQELTQRLWGS 185

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            PEY++      +H P FT+ V   G    +G   SK+
Sbjct: 186 LPEYRLVAAQ--EHPPHFTMEVWGQGRCWGRGEGRSKK 221


>gi|226528435|ref|NP_001141713.1| hypothetical protein LOC100273842 [Zea mays]
 gi|194705648|gb|ACF86908.1| unknown [Zea mays]
          Length = 329

 Score =  169 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 103/244 (42%), Gaps = 27/244 (11%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTL 58
           MSA   + +E  +GY F ++SL+E ALTH S    +   ++YERLE+LGD +L  L+S  
Sbjct: 43  MSAKDVTAIEALLGYCFIDKSLVELALTHGSFYWPNRPGDTYERLEYLGDGVLTCLMSRE 102

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFM------ 111
           +F  + + + G L+    + V  E  ++VA    L  F+R  +  L+  +C F+      
Sbjct: 103 VFRTYRTLQPGPLTRLRAANVDTEKLARVAVHRGLHRFLRHKAPKLQDQICFFIEEMRKY 162

Query: 112 ----------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTE 160
                       +  D+VESLI A+YLD   +    + V +      +      +   +E
Sbjct: 163 PVHSNGLLDPPKVLCDIVESLIGAIYLDSNFDQEEVWRVFRTLADPLIGLETLGKHPVSE 222

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEV 219
           L E+                   + D    V V I G      +    K  A+  AA + 
Sbjct: 223 LFEFCQKTHRG------VKFLKDEWDKSLKVQVLIDGEVVGSAIYGPKKEIAQNRAAKDA 276

Query: 220 LKRE 223
           L + 
Sbjct: 277 LDKL 280


>gi|75907020|ref|YP_321316.1| ribonuclease III [Anabaena variabilis ATCC 29413]
 gi|75700745|gb|ABA20421.1| RNAse III [Anabaena variabilis ATCC 29413]
          Length = 242

 Score =  169 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 61/212 (28%), Positives = 105/212 (49%), Gaps = 10/212 (4%)

Query: 5   RYSTLEKRIGYA---FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +  +L +++G          LL+ ALTH ++S S   +YE+LEF+GD ++ L  + +L+ 
Sbjct: 11  QLESLVRKLGLPTTAPIKWELLDLALTHPTVSESA--NYEQLEFVGDAVVRLAAAVMLWE 68

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +     G+ +   + LVS    +Q+ARE  L   + V+     D      S  AD  E+
Sbjct: 69  TYPDCPVGDFAAIRSVLVSDRILAQLAREYGLELHLLVAGSATSDKIGQ-ESRLADAFEA 127

Query: 122 LIAALYLD-GGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++ ALYL    +E+   ++D +++Q A  ++    R + K  LQEW  A+F V PEY+V 
Sbjct: 128 VLGALYLSTSNLELIRPWLDHHFRQLAAEIRLDPARLNYKAALQEWTQAQFKVLPEYRVV 187

Query: 179 FRSGPDHDP-RFTVVVEISGLAPAQGMDCSKR 209
             +  +    RF   V + G    +G   S +
Sbjct: 188 EINQANRTQERFAAEVWLHGNKLGEGKGRSIK 219


>gi|323126809|gb|ADX24106.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
           ATCC 12394]
          Length = 151

 Score =  169 bits (428), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 1/147 (0%)

Query: 78  LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137
           +V  E+ +  +R     ++I++     K       +I  D+ E+ + AL LD G++    
Sbjct: 2   IVREESLAGFSRFCSFDTYIKLGKGEEKSGGRNRDTILGDLFEAFLGALLLDKGVDEVRR 61

Query: 138 FVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
           F+ +    +  K   +  +D KT LQE   +K  +  +Y+V    GP H  +F V V ++
Sbjct: 62  FLQQVMIPQVEKGNFEKVKDYKTCLQELLQSKGDIAIDYQVISEKGPAHAKQFEVAVFVN 121

Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               ++G+  SK+ AEQ AA   L + 
Sbjct: 122 EEVLSKGLGKSKKMAEQDAAKNALVQL 148


>gi|212550552|ref|YP_002308869.1| ribonuclease III [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
 gi|229564347|sp|B6YQI6|RNC_AZOPC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|212548790|dbj|BAG83458.1| ribonuclease III [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
          Length = 261

 Score =  169 bits (428), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 58/230 (25%), Positives = 107/230 (46%), Gaps = 16/230 (6%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLIST 57
               Y  L + +G+   N S+ EKAL H S S    +   ++ ERLEFLGD I   +I+ 
Sbjct: 16  KKESYFALYRMLGFPPKNFSIYEKALLHKSSSKRDENGCYQNNERLEFLGDAIFNAIIAV 75

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
           +L+  F +  EG L+   + +V  +T  ++A +L +   I +S+ ++         I  +
Sbjct: 76  ILYKKFPTNDEGFLTNTRSKIVKRDTLDKIAYQLGINHLIMISAKVKNH-----KHIMGN 130

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPE 174
            +E+ I A+YLD G      FV+K      +      R   + K++L EW   K  +  +
Sbjct: 131 TLEAFIGAIYLDKGYLKTKEFVEKRIINPYIDIDTLVREEVNFKSKLFEWCQ-KHKILLQ 189

Query: 175 YKVTFRSGPDHDP--RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           ++    +  D++    F +   ++      G+  SKR ++Q A+    ++
Sbjct: 190 FQTL-ENFTDNNRNVVFQIQALLNNHIAGIGIGYSKRESQQHASQMTWRK 238


>gi|195624966|gb|ACG34313.1| endoribonuclease Dicer [Zea mays]
          Length = 329

 Score =  168 bits (427), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 103/244 (42%), Gaps = 27/244 (11%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTL 58
           MSA   + +E  +GY F ++SL+E ALTH S    +   ++YERLE+LGD +L  L+S  
Sbjct: 43  MSAKDVTAIEALLGYCFIDKSLVELALTHGSFYWPNRPGDTYERLEYLGDGVLTCLMSRE 102

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFM------ 111
           +F  + + + G L+    + V  E  ++VA    L  F+R  +  L+  +C F+      
Sbjct: 103 VFRTYRTLQPGPLTRLRAANVDTEKLARVAVHRGLYRFLRHKAPKLQDQICFFIEEMRKY 162

Query: 112 ----------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTE 160
                       +  D+VESLI A+YLD   +    + V +      +      +   +E
Sbjct: 163 PVHSNGLLDPPKVLCDIVESLIGAIYLDSNFDQEEVWRVFRTLADPLIGLETLGKHPVSE 222

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEV 219
           L E+                   + D    V V I G      +    K  A+  AA + 
Sbjct: 223 LFEFCQKTHRG------VKFLKDEWDKSLKVQVLIDGEVVGSAIYGPKKEIAQNRAAKDA 276

Query: 220 LKRE 223
           L + 
Sbjct: 277 LDKL 280


>gi|172355315|ref|NP_001116485.1| endoribonuclease Dicer-1 [Apis mellifera]
 gi|170181362|gb|ACB11577.1| dicer-1 CG4792-PA-like protein [Apis mellifera]
          Length = 1946

 Score =  168 bits (427), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 64/256 (25%), Positives = 101/256 (39%), Gaps = 47/256 (18%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y  LEK IGY F + S L +A TH+S   +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1695 YEELEKNIGYKFHDISYLLQAFTHASYQPNRLTDCYQRLEFLGDAVLDYLITRHLYEDTR 1754

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111
                G L+   ++LV+    + +A       + R +S  L   +  F+            
Sbjct: 1755 QHSPGALTDLRSALVNNTIFASLAVRCGFHKYFRHLSPGLSIVINRFVRIQEENGHSIGE 1814

Query: 112  ------------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153
                                   DV ESL  A+YL  G+ +   +   Y+     +  +F
Sbjct: 1815 EYYLIGEEECEEAEDVEVPKALGDVFESLAGAIYLGSGMSLDAVW-SVYYAIMKNEIEQF 1873

Query: 154  RRD-AKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +  K+ ++E        AKFG             D   R  V V++ G    +G+  +
Sbjct: 1874 STNVPKSPIRELLELEPETAKFGKP-------EKLADG-RRVRVTVDVFGKGSFKGIGRN 1925

Query: 208  KRAAEQVAAAEVLKRE 223
             R A+  AA   LK+ 
Sbjct: 1926 YRIAKCTAAKCALKKL 1941



 Score = 62.0 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 2/89 (2%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             SL+ +ALT S+ +     + ERLE +GD  L   I+T L+  +D+  EG+LS   +  V
Sbjct: 1417 PSLILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYCTYDNIHEGKLSHLRSKQV 1474

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDVC 108
            S     ++ R+  L   +  +     D  
Sbjct: 1475 SNLNLYRLGRQKMLGESMIATKFEPHDNW 1503


>gi|125555283|gb|EAZ00889.1| hypothetical protein OsI_22916 [Oryza sativa Indica Group]
          Length = 276

 Score =  168 bits (426), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 58/244 (23%), Positives = 97/244 (39%), Gaps = 27/244 (11%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTL 58
           M     + +E  +GY F +++L+E+ALTH S  + Y+   +YERLE+LGD +L  ++S  
Sbjct: 34  MGPGEVAAVESLLGYEFRDKALVEQALTHGSFYYPYRPGVTYERLEYLGDAVLTCVVSRE 93

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS----------------- 101
           +F  +   + G L+    + V  E  ++VA    L  F+R  +                 
Sbjct: 94  VFLTYGQLQPGPLTRLRAANVDKEKLARVAVVHGLHHFLRHKAPNLDGQITDFIEELSMY 153

Query: 102 DLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTE 160
            +  +       +  DVVESLI A+Y D        + V +      +      +   +E
Sbjct: 154 PIHSNGLLDPPKVLCDVVESLIGAIYCDSNFNQEIVWQVFQKLADPLISLETLGKHPVSE 213

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA-AEQVAAAEV 219
           L E+                   + D   TV V I G    +     K+  A+  AA   
Sbjct: 214 LFEFCQKTRRG------VKIVKDEWDKNLTVEVLIDGEMVGRATYAQKKEIAQNRAAKAA 267

Query: 220 LKRE 223
           L + 
Sbjct: 268 LDKL 271


>gi|297848414|ref|XP_002892088.1| hypothetical protein ARALYDRAFT_333551 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297337930|gb|EFH68347.1| hypothetical protein ARALYDRAFT_333551 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1962

 Score =  168 bits (426), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 62/237 (26%), Positives = 103/237 (43%), Gaps = 30/237 (12%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            + ++ +  LE+ + + F  + LL +A+TH+S   S    Y+RLEF+GD +L  LI+  LF
Sbjct: 1607 LKSIDFVGLERALKFEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 1666

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-LRKDVCSFM-------- 111
              + S   G L+    + V+ E  ++VA +  L  ++R  S  L K +  F+        
Sbjct: 1667 FTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESS 1726

Query: 112  --------------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRD 156
                            +  D+VES+  A++LD G +    + V +   Q  +        
Sbjct: 1727 KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMH 1786

Query: 157  AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
               ELQE    +     EYK   RSG       TV V I G+      +  K+ A++
Sbjct: 1787 PVRELQERCQQQAEGL-EYKA-SRSGN----TATVEVFIDGVQVGVAQNPQKKMAQK 1837



 Score = 72.0 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 3/91 (3%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             L+  I Y      +L +ALT +S   ++   YER E LGD  L  ++S  LF  +    
Sbjct: 1398 QLKNLISYPIPTSKIL-EALTAASCQETF--CYERAELLGDAYLKWVVSRYLFLKYPQKH 1454

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIR 98
            EG+L+     +VS     Q A    L S+I+
Sbjct: 1455 EGQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 1485



 Score = 44.7 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 6/67 (8%)

Query: 161  LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGMD---CSKRAAEQV 214
            L +    K    P Y+     GP H  RFT  V ++        + +     S + A+  
Sbjct: 1889 LNDICLRKNWPMPSYRCVKEGGPAHAKRFTFGVRVNTSDRGWTDECIGEPMPSVKKAKDS 1948

Query: 215  AAAEVLK 221
            AA  +L+
Sbjct: 1949 AAVLLLQ 1955


>gi|56752450|ref|YP_173151.1| ribonuclease III [Synechococcus elongatus PCC 6301]
 gi|81300454|ref|YP_400662.1| RNAse III [Synechococcus elongatus PCC 7942]
 gi|56687409|dbj|BAD80631.1| ribonuclease III [Synechococcus elongatus PCC 6301]
 gi|81169335|gb|ABB57675.1| RNAse III [Synechococcus elongatus PCC 7942]
          Length = 247

 Score =  168 bits (426), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 57/195 (29%), Positives = 91/195 (46%), Gaps = 8/195 (4%)

Query: 19  NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           +   +++ALTH S +   ++ Y+RLEFLGD +L L I+  L  H+     G+ S   + L
Sbjct: 36  DWQQIDRALTHPSAA---EDHYDRLEFLGDAVLRLAIADFLDRHYPDLSVGDCSALRSEL 92

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG-GIEVAGT 137
            S  T + +A   +L   +RV      D     +   A+  E+L+ ALYL    ++   +
Sbjct: 93  GSDRTLAAIAASYNLERVLRVGKTAANDRAGQQSR-LAEAFEALLGALYLSQRNLDPIRS 151

Query: 138 FVDKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVE 194
           ++D + +QRA        R + K  LQEW   ++   PEY+   RS    DP  F   V 
Sbjct: 152 WLDPHLQQRATAMLQDPTRGNYKAALQEWTLQRYQELPEYRTEQRSDACGDPAAFAAEVW 211

Query: 195 ISGLAPAQGMDCSKR 209
             G     G+  S +
Sbjct: 212 FRGEKLGSGVGRSIK 226


>gi|115468004|ref|NP_001057601.1| Os06g0358800 [Oryza sativa Japonica Group]
 gi|75254269|sp|Q69KJ0|RTL3_ORYSJ RecName: Full=Ribonuclease 3-like protein 3; AltName:
           Full=Ribonuclease III-like protein 3; Short=RNase
           III-like protein 3
 gi|51091751|dbj|BAD36550.1| CAF protein-like [Oryza sativa Japonica Group]
 gi|113595641|dbj|BAF19515.1| Os06g0358800 [Oryza sativa Japonica Group]
 gi|125597181|gb|EAZ36961.1| hypothetical protein OsJ_21299 [Oryza sativa Japonica Group]
          Length = 299

 Score =  167 bits (425), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 58/244 (23%), Positives = 97/244 (39%), Gaps = 27/244 (11%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTL 58
           M     + +E  +GY F +++L+E+ALTH S  + Y+   +YERLE+LGD +L  ++S  
Sbjct: 34  MGPGEVAAVESLLGYEFRDKALVEEALTHGSFYYPYRPGVTYERLEYLGDAVLTCVVSRE 93

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS----------------- 101
           +F  +   + G L+    + V  E  ++VA    L  F+R  +                 
Sbjct: 94  VFLTYGQLQPGPLTRLRAANVDKEKLARVAVVHGLHHFLRHKAPNLDGQITDFIEELSMY 153

Query: 102 DLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTE 160
            +  +       +  DVVESLI A+Y D        + V +      +      +   +E
Sbjct: 154 PIHSNGLLDPPKVLCDVVESLIGAIYCDSNFNQEIVWQVFQKLADPLISLETLGKHPVSE 213

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA-AEQVAAAEV 219
           L E+                   + D   TV V I G    +     K+  A+  AA   
Sbjct: 214 LFEFCQKTRRG------VKIVKDEWDKNLTVEVLIDGEMVGRATYAQKKEIAQNRAAKAA 267

Query: 220 LKRE 223
           L + 
Sbjct: 268 LDKL 271


>gi|294787403|ref|ZP_06752656.1| ribonuclease III [Parascardovia denticolens F0305]
 gi|315227028|ref|ZP_07868815.1| ribonuclease III [Parascardovia denticolens DSM 10105]
 gi|294484759|gb|EFG32394.1| ribonuclease III [Parascardovia denticolens F0305]
 gi|315119478|gb|EFT82611.1| ribonuclease III [Parascardovia denticolens DSM 10105]
          Length = 290

 Score =  167 bits (425), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 63/263 (23%), Positives = 109/263 (41%), Gaps = 51/263 (19%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDS 65
            L   +G + +   LL +ALTH S ++ +    +YERLEFLGD +L L+ +  L+    +
Sbjct: 20  ELFDELGVSIS-PDLLIEALTHRSFANEHPGTRNYERLEFLGDAVLELVATETLYKAHPN 78

Query: 66  AKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             EG++S   + +VS E+ +++AR +L ++  I +    R+D  +   SI  D+VESL  
Sbjct: 79  YTEGQMSKIRSKVVSEESLAEIARDKLKISPMILLGIGERRDGGADKDSILCDIVESLFG 138

Query: 125 ALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A++++ GIE A   + +          +     D KT +   AH        Y++    G
Sbjct: 139 AIFVEYGIETARKVIHRLLDDNLHYYTAEGPALDWKTAIVVKAHELDLGEVNYQM-EVGG 197

Query: 183 PDHDPRFTVVVEI---------------------------------------SGLAPAQ- 202
           P +   FT  + +                                       +G    + 
Sbjct: 198 PSNRLEFTAHLFLVKEPDADTAQGKSTATAENMASAGNKAHSENPESSVADDAGKTSGRQ 257

Query: 203 ----GMDCSKRAAEQVAAAEVLK 221
               G   SKR A+  AA +  +
Sbjct: 258 EISVGHGSSKRKAQLDAAEKAWR 280


>gi|94469418|gb|ABF20197.1| ribonuclease III [Ehrlichia ruminantium]
          Length = 145

 Score =  167 bits (425), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 50/139 (35%), Positives = 79/139 (56%)

Query: 84  CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143
             ++A+ ++L  FI +S   R    +  ++   + +E+LI A+YLDGG++ A  F+  +W
Sbjct: 1   LVEIAQSINLGIFIIMSDGERSCGGANNSNNLENALEALIGAIYLDGGLKAAKDFIFLFW 60

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203
           K  A       +DAKT LQEWA +K    P Y +  +SGPDH+P FTV V I+     + 
Sbjct: 61  KNSATHMKVPPQDAKTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRINSHETLRA 120

Query: 204 MDCSKRAAEQVAAAEVLKR 222
              +K+ AEQ AA+ +L +
Sbjct: 121 TGHNKKLAEQKAASLMLAK 139


>gi|313204618|ref|YP_004043275.1| ribonuclease iii [Paludibacter propionicigenes WB4]
 gi|312443934|gb|ADQ80290.1| ribonuclease III [Paludibacter propionicigenes WB4]
          Length = 277

 Score =  167 bits (425), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 100/219 (45%), Gaps = 12/219 (5%)

Query: 11  KRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           K +G+        + A+ H S+S    +    S ERLEFLGD +L  +++ +L+  +   
Sbjct: 25  KVLGFYPDKIEYYQLAVRHKSVSIPTENGRNLSNERLEFLGDAVLNSVVTDILYRRYKEE 84

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +EG L+   + +V  ++ +++A E+ L   ++V+            +I  + +E+L+ A+
Sbjct: 85  REGFLTNTRSKIVKRDSLNKLALEIGLDKLVKVTK---YVNAHTNNNIYGNALEALLGAI 141

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           YLD G +    FV++   +  +   K      + K++L EW       T E+ +   +  
Sbjct: 142 YLDYGYKKCKKFVEQRLFKSFVNLDKVAENEVNFKSKLIEWCQKNKLET-EFILLSETMS 200

Query: 184 DHDPR-FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             +   F   + I G    +    SK+ ++Q A+    +
Sbjct: 201 GSNKHVFLSGLMIQGQKICEASGMSKKESQQNASRIAFE 239


>gi|91215536|ref|ZP_01252507.1| putative ribonuclease III [Psychroflexus torquis ATCC 700755]
 gi|91186488|gb|EAS72860.1| putative ribonuclease III [Psychroflexus torquis ATCC 700755]
          Length = 245

 Score =  167 bits (424), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 60/225 (26%), Positives = 103/225 (45%), Gaps = 12/225 (5%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIST 57
           + + +  +++ I     + S+ ++A THSS+     E    SYERLEFLGD ILG +IST
Sbjct: 16  NGIFFKKIQRIIKVKHKSLSIYKQAFTHSSLKLKDDEGKFISYERLEFLGDSILGAVIST 75

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            LF +     EG L+   + +VS +  + +    DLA        + K       +I  +
Sbjct: 76  YLFENAPHGDEGYLTKMRSKIVSRKNLNLLGESFDLADLTLSEIPVEKMG----KNINGN 131

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPE 174
           + E+LI A+Y+D G +    F+ K   +  +   K  +     K+ + EW         E
Sbjct: 132 LFEALIGAIYVDKGFKDCEAFIYKKVIREDVDLAKLEKRVMSYKSLMIEWCQKNKFP-FE 190

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           + +    G D +  F V + I+     +  + SK+ AE+ A+   
Sbjct: 191 FVIEDDFGKDEEKHFAVKLIINNEISGKARETSKKRAEEKASQRA 235


>gi|321309555|ref|YP_004191884.1| ribonuclease III [Mycoplasma haemofelis str. Langford 1]
 gi|319801399|emb|CBY92045.1| ribonuclease III [Mycoplasma haemofelis str. Langford 1]
          Length = 229

 Score =  167 bits (424), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 65/218 (29%), Positives = 99/218 (45%), Gaps = 11/218 (5%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           L K  G    +++L  KA THSS    + +++  YE+LEFLGD ++GL I++ LF     
Sbjct: 11  LNKSFGLTIKDKNLFTKAFTHSSYKGCNPNFKGDYEKLEFLGDSVIGLSIASELFKR--D 68

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
              G +S   + +VS  + + V R+LD  ++IRV        C    SI  DV E+ I A
Sbjct: 69  ISLGAISTSKDQIVSGSSLAYVGRKLDFHNYIRVG----NSCCVISDSIIEDVYEAFIGA 124

Query: 126 LYLDGGIEVAGTFVDK-YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS-GP 183
           +Y + G E A   V    W    +    F  D KT+L      K+     Y +       
Sbjct: 125 VYCEFGFETARKIVLSSLWNYFLMGELDFYFDYKTKLNTLVGQKYKGKVTYTLIDSFPSK 184

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           D    F V    +  + + G+  + + AEQ AA + L 
Sbjct: 185 DGSTTFKVSASWNNDSLSIGLGTTLKKAEQAAAQDALN 222


>gi|330945754|gb|EGH47188.1| ribonuclease III [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 164

 Score =  167 bits (424), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 53/157 (33%), Positives = 76/157 (48%), Gaps = 3/157 (1%)

Query: 54  LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
            ++  LF  F  A+EG+LS     LV  ET + +AR  DL  ++R+ S   K       S
Sbjct: 7   WLAEALFERFPQAREGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRES 66

Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQR--ALKSGKFRRDAKTELQEWAHAKFGV 171
           I AD +E+LI A+YLD G+E A   V  +      +L      +D KT LQE+  ++   
Sbjct: 67  ILADALEALIGAIYLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACE 126

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCS 207
            P Y+V    G  H   F V  EI+ L   ++G   S
Sbjct: 127 LPRYEVVDIQGEPHCRTFFVECEINLLNEKSRGQGVS 163


>gi|94469421|gb|ABF20199.1| ribonuclease III [Ehrlichia ruminantium]
 gi|94469427|gb|ABF20203.1| ribonuclease III [Ehrlichia ruminantium]
          Length = 145

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 50/139 (35%), Positives = 78/139 (56%)

Query: 84  CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143
             ++A+ ++L  FI +S   R    +  ++   + +E+LI A+YLDGG++ A  F+  +W
Sbjct: 1   LVEIAQSINLGIFIIMSDGERSCGGANNSNNLENALEALIGAIYLDGGLKAAKDFIFLFW 60

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203
           K  A       +DAKT LQEWA +K    P Y +  +SGPDH+P FTV V I+       
Sbjct: 61  KNSATHMKVPPQDAKTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRINSHETLHA 120

Query: 204 MDCSKRAAEQVAAAEVLKR 222
              +K+ AEQ AA+ +L +
Sbjct: 121 TGHNKKLAEQKAASLMLAK 139


>gi|163786802|ref|ZP_02181250.1| hypothetical protein FBALC1_16492 [Flavobacteriales bacterium
           ALC-1]
 gi|159878662|gb|EDP72718.1| hypothetical protein FBALC1_16492 [Flavobacteriales bacterium
           ALC-1]
          Length = 247

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 54/208 (25%), Positives = 97/208 (46%), Gaps = 12/208 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFN 61
           +  L+K +G+   ++SL  KA TH S++    +    +YERLEF+GD +L  +I+  LF 
Sbjct: 20  FLELKKILGFKPKSKSLYIKAFTHRSMNIKNKNGNAINYERLEFVGDAMLSSVIAAYLFE 79

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
                 EG L+   + +VS E  +++ ++L L   ++     R    +F  +I  ++ E+
Sbjct: 80  QVPHGDEGYLTKMRSKVVSREHLNELGKDLGLIDLVQ----SRIPKSNFGNNIHGNLFEA 135

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVT 178
           L+ A+YLD G +    F+ K      +            K+ L EW   +   T +Y V 
Sbjct: 136 LVGAIYLDKGYKFCEKFIYKRVINPYVDIETLEGKVISYKSLLIEWCQKE-KNTFDYNVY 194

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDC 206
             +G D    F+V + I+    ++    
Sbjct: 195 EDTGKDELKHFSVKLSINDKVVSKARAT 222


>gi|168039663|ref|XP_001772316.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162676303|gb|EDQ62787.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1275

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 61/242 (25%), Positives = 105/242 (43%), Gaps = 22/242 (9%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           +S  + S LE  + Y F N+ LL +ALTH+S      + Y+RLEFLGD +L  LI+   +
Sbjct: 694 LSEAKVSELEILLNYKFQNKGLLVEALTHASCRRHSGDCYQRLEFLGDAVLDFLITKHFY 753

Query: 61  NHFDSA--KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL--------------- 103
            +  +     G L+   ++ V+ E  ++VA   +L  ++  +S                 
Sbjct: 754 ANSANLKRDPGLLTDLRSAAVNNECFARVAVRHNLHLYLLHNSSDLAARVDKYVHGSTTD 813

Query: 104 ---RKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKT 159
                        + +D+VESL  A++LD G ++   + V K   +  +     R +   
Sbjct: 814 AQCHGWNGDSGPKVLSDLVESLAGAVFLDSGYKLDTVWNVFKQLLKPLVTPATLRLEPIR 873

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           EL E    +    P YK    +  D D   TV ++        G    +++A +VAA + 
Sbjct: 874 ELWELCQTEKFGEPNYKKKREAMGDFDMTVTVELK-DETITGVGRKPDEKSARKVAAIQA 932

Query: 220 LK 221
           L+
Sbjct: 933 LE 934



 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/157 (25%), Positives = 60/157 (38%), Gaps = 44/157 (28%)

Query: 21  SLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           +L+ +A+T    +   QES+  E LE LGD  L + +S  LF   +   EGELS R  +L
Sbjct: 512 NLMLEAIT----TSKCQESFSLEGLELLGDAFLEVSVSERLFLLHNRLDEGELSKRRTNL 567

Query: 79  VSAETCSQVARELDL-------------------------ASFIR---VSSDLRKDVCSF 110
           +  +   ++ RE  +                          ++IR    S          
Sbjct: 568 ICNKMLERLGRERGIMVSKSCRDTTRSTYKQFEIMINLVSENYIRDTQFSPKEWATPGRV 627

Query: 111 MT----------SIQADVVESLIAALYLDGGIEVAGT 137
                          ADV E+LI A Y+ GG+E A  
Sbjct: 628 RETQCKLPPLQGKTIADVFEALIGAHYIHGGVEAAQA 664


>gi|308190056|ref|YP_003922987.1| ribonuclease III [Mycoplasma fermentans JER]
 gi|319777350|ref|YP_004137001.1| ribonuclease iii [Mycoplasma fermentans M64]
 gi|238809526|dbj|BAH69316.1| hypothetical protein [Mycoplasma fermentans PG18]
 gi|307624798|gb|ADN69103.1| ribonuclease III [Mycoplasma fermentans JER]
 gi|318038425|gb|ADV34624.1| Ribonuclease III [Mycoplasma fermentans M64]
          Length = 236

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 55/238 (23%), Positives = 95/238 (39%), Gaps = 19/238 (7%)

Query: 1   MSALRYS--TLEKRIGYAFANRSLLEKALTHSSI-----------SHSYQESYERLEFLG 47
           M  ++ +     K     + N     +A+TH S                  +Y+ LEFLG
Sbjct: 1   MDEIKQTIQEFLKAWNINYHNLGYYRQAVTHGSYFGLKKNQNKNNVSERVGNYQDLEFLG 60

Query: 48  DRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107
           D IL  L S  +F  F +   G +++  + LV  ++ ++++ ++ L  F+  +       
Sbjct: 61  DAILQYLSSDFVFKKFPNLSAGNMTLIRSKLVCTKSLNEISTKIGLKDFLLTAPGQMSKD 120

Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA 165
                 + AD+ E+ IAA+YLD  ++V   F++K      +     K  +DAKT  QE  
Sbjct: 121 AKRSVKVGADIFEAFIAAIYLDTNLKVVKEFLNKTVFDIKIGDFDIKHLKDAKTAFQEQI 180

Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +   +   Y +     P     F             G   SK  AE+ AA + L + 
Sbjct: 181 QSFSKLAVMY-IVSEKSPT---EFEAHAVHDNKIYGIGFGKSKAEAEENAALDALHKM 234


>gi|88801614|ref|ZP_01117142.1| putative ribonuclease III [Polaribacter irgensii 23-P]
 gi|88782272|gb|EAR13449.1| putative ribonuclease III [Polaribacter irgensii 23-P]
          Length = 245

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 61/221 (27%), Positives = 101/221 (45%), Gaps = 16/221 (7%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHF 63
            L+K + ++  + +  +KA TH S+          +YERLEFLGD ILG +IS  L+   
Sbjct: 21  ELKKLLKFSPTSINKYKKAFTHRSVQMIDRKGIPINYERLEFLGDSILGAVISAYLYKEA 80

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               EG L+   + +VS E  +++ ++L+L  F++ + D          +I  ++ E+LI
Sbjct: 81  PKGSEGYLTQMRSKIVSREHLNELGKDLNLIRFVKSNIDQANVG----DNIHGNIFEALI 136

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEY--KVT 178
            A+YLD G      F+ +      +   K        K  + EW   +      Y     
Sbjct: 137 GAIYLDKGFNFCQKFIHQNVIAPYVDIAKLEGKITSYKGLIIEWCQKQKK---RYAFDAY 193

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
             SG +    F+V + I G   A+G   SK+ AE+ A+  V
Sbjct: 194 EDSGNETTKHFSVKISIDGQQIAKGRATSKKKAEEQASKRV 234


>gi|37522217|ref|NP_925594.1| ribonuclease III [Gloeobacter violaceus PCC 7421]
 gi|35213217|dbj|BAC90589.1| ribonuclease III [Gloeobacter violaceus PCC 7421]
          Length = 242

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 60/204 (29%), Positives = 89/204 (43%), Gaps = 11/204 (5%)

Query: 21  SLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
            LL +AL H S  +    E  +RLEFLGD IL LL +  L+        GE++   + LV
Sbjct: 32  ELLHRALIHPSWSAQEGGEDNDRLEFLGDEILRLLAAEFLYRADPELTVGEMTAVRSVLV 91

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG-IEVAGTF 138
           S    +++A   DL  F+ V      D      +  AD  E++I ALYL  G + +   +
Sbjct: 92  SDVALAELAEGYDLGEFLVVGRSASGDE-RGRITRLADGFEAVIGALYLSTGDLGLIRPW 150

Query: 139 VDKYWKQ--RALKSGKFRRDAKTELQEWAHAK-FGVTPEYKVTFRSGPDHDPRFTVVVEI 195
           +  +      ++ +   R + K+ LQE       G  PEY++    GP     F   V  
Sbjct: 151 LLPHLAHLAESVMADPTRGNHKSALQELTQKLAAGELPEYRLVD-PGPP----FRYEVWA 205

Query: 196 SGLAPAQGMDCSKRAAEQVAAAEV 219
            G     G   SK+ A+Q AA   
Sbjct: 206 LGRLWGSGEGPSKKLAQQRAARGA 229


>gi|126178317|ref|YP_001046282.1| ribonuclease III [Methanoculleus marisnigri JR1]
 gi|125861111|gb|ABN56300.1| RNAse III [Methanoculleus marisnigri JR1]
          Length = 258

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 57/210 (27%), Positives = 98/210 (46%), Gaps = 14/210 (6%)

Query: 20  RSLLEKALTHSSISHSYQ------ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
             L ++ALTH S ++  +      E  ERLEFLG+ +L  +I+  L+  +     GE++ 
Sbjct: 54  IPLYDRALTHRSYANHGEYPAETFEDNERLEFLGNYVLDFVIADHLYGEY-DLPPGEMN- 111

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           R   +      +++ R   L     +   +R+       SI AD  E+LI A+YLD G+ 
Sbjct: 112 RRLQVTRNTKLAEIVRRQGLG----IDGAVRRRGQPPTDSIVADAFEALIGAIYLDRGLG 167

Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
           VA   V   +++   +     R+ +  LQE+   +     EY    ++GP + P +   V
Sbjct: 168 VARDVVLAIFEEEIAECDTH-RNYRGRLQEYVARENLGELEYAFL-QTGPGNCPVWAARV 225

Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            + G+   +G   +K+ A  +AA E L R 
Sbjct: 226 TVGGIPFGEGEARTKQGAAMIAAKEALARL 255


>gi|269115244|ref|YP_003303007.1| dsRNA-specific ribonuclease III [Mycoplasma hominis]
 gi|268322869|emb|CAX37604.1| dsRNA-specific ribonuclease III [Mycoplasma hominis ATCC 23114]
          Length = 231

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 99/220 (45%), Gaps = 14/220 (6%)

Query: 12  RIGYAFAN-----RSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
           + G  F       R     A THSS S+ ++  ESY+ LEFLGD +LG ++S  +F+++ 
Sbjct: 15  KFGINFQKLDEQKRRYFCNAFTHSSYSNEHKNLESYQYLEFLGDSVLGFVVSDFIFDNYK 74

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  EG+ +   + +V       +++     + +R       +     +   +D++ES I 
Sbjct: 75  NFGEGKATKLKSEIVDKNALGFLSKYYGFPNCLRTGKSAFANGKGIKSD--SDLIESFIG 132

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           A Y   G++     +  +  +   K         KT+LQE   + +G  P Y        
Sbjct: 133 ACYKACGLKFTKEIIYHFIDKILKKFHNSINEHPKTKLQELVQSNWGCRPRY----EDQA 188

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            ++ +F   V I+     +G+  SK+ ++  AA++ LK+ 
Sbjct: 189 LNNGKFESKVFINNNLYGEGIGQSKKESQTKAASDALKKM 228


>gi|256419408|ref|YP_003120061.1| ribonuclease III [Chitinophaga pinensis DSM 2588]
 gi|256034316|gb|ACU57860.1| ribonuclease III [Chitinophaga pinensis DSM 2588]
          Length = 253

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 61/224 (27%), Positives = 99/224 (44%), Gaps = 9/224 (4%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           Y  L   +G+A  N SL E AL+H S    + ES ERLE+LGD ILG +I   LF  +  
Sbjct: 32  YKDLYNLLGFAPGNFSLYEVALSHRSSKEKFLESNERLEYLGDAILGAIIGDYLFKKYPY 91

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS-IQADVVESLIA 124
             EG L+   + +V+ +  + +A ++ L           K       S I  + +E+L+ 
Sbjct: 92  KTEGYLTEMRSKIVNRQQLNDIAIKMGLRKLTIY----DKYNSFLKISQIFGNTLEALVG 147

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           A+YLD G      FV +      +   +      + K +L  WA+       E+ +    
Sbjct: 148 AVYLDKGYNRTKQFVHQRLIVPYIDLEQLENVEMNHKNKLYGWANKHGKTL-EFDLLEEQ 206

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
             +    FTV   + G     G   +K+ A Q+AA + ++  G+
Sbjct: 207 MDNGRRIFTVGAVVDGELICSGKAFNKKDASQIAAQQAIELLGL 250


>gi|332519389|ref|ZP_08395856.1| ribonuclease III [Lacinutrix algicola 5H-3-7-4]
 gi|332045237|gb|EGI81430.1| ribonuclease III [Lacinutrix algicola 5H-3-7-4]
          Length = 247

 Score =  166 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 97/208 (46%), Gaps = 12/208 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           + T+ + IGY        + A TH S++    +    +YERLEFLGD +L  +I+  L+ 
Sbjct: 19  FITVSQIIGYKPKTIKHFKTAFTHRSMNIRNSKGNIVNYERLEFLGDAMLSAVIAHHLYE 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
              S  EG L+   + +VS E  +++ R+L L + +    + +     F  +I  ++ ES
Sbjct: 79  EVPSGDEGYLTKMRSKVVSREHLNELGRDLKLINLV----ESKIPKGQFGDNIHGNLFES 134

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVT 178
           L+ A+YLDGG +    F+ K      +   +        K+ L EW   +   T +Y V 
Sbjct: 135 LVGAIYLDGGFKACEKFIYKRVITPFVDIEQLEGKVISYKSLLIEWCQKEKK-TFDYNVY 193

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDC 206
             +G D+   F+V + I     ++G   
Sbjct: 194 EDTGNDNIRHFSVKLSIDNKIVSKGRAT 221


>gi|242078881|ref|XP_002444209.1| hypothetical protein SORBIDRAFT_07g015020 [Sorghum bicolor]
 gi|241940559|gb|EES13704.1| hypothetical protein SORBIDRAFT_07g015020 [Sorghum bicolor]
          Length = 291

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 62/244 (25%), Positives = 98/244 (40%), Gaps = 27/244 (11%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTL 58
           MSA   + +E  +GY FA++SL+E ALTH S    +   ++YERLE+LGD +L  L+S  
Sbjct: 22  MSAEDVAAIEAVLGYEFADKSLVELALTHGSFYFPYRPGDTYERLEYLGDGVLTCLMSRE 81

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS----------------- 101
           +F ++ +   G L+    + V  E  ++VA +  L  F+R  +                 
Sbjct: 82  VFRNYRTLPPGPLTRLRAANVDTEKLARVAVDRGLHRFLRHKAPKLQDQICLFIEEMRKY 141

Query: 102 DLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTE 160
            +  +       +  D+VESLI A+Y D        + V +      +      +   TE
Sbjct: 142 PVHSNGLLDPPKVLCDIVESLIGAIYWDSDFNQEEVWRVFRTLADPLIGLETLGKHPVTE 201

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEV 219
           L E+                   + D    V V I G   A       K  A+  AA   
Sbjct: 202 LFEFCQKTRRG------VKFVKDEWDKSLKVEVLIDGELVASATYGPKKEIAQNRAAKAA 255

Query: 220 LKRE 223
           L + 
Sbjct: 256 LDKL 259


>gi|126662618|ref|ZP_01733617.1| putative ribonuclease III [Flavobacteria bacterium BAL38]
 gi|126625997|gb|EAZ96686.1| putative ribonuclease III [Flavobacteria bacterium BAL38]
          Length = 260

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 101/223 (45%), Gaps = 12/223 (5%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLL 59
           + +  + K +G+        +KA TH S +         +YERLEFLGD +LG +I+  L
Sbjct: 32  IFFEKITKILGFEPKELRYYKKAFTHRSTNKVDEKGNPFNYERLEFLGDAMLGSVIAAHL 91

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +N   S  EG L+   + +VS E  +++ R+ +L  F+    + + +   F  +I  ++ 
Sbjct: 92  YNEVPSGDEGYLTKMRSKIVSREHLNELGRDFNLVHFV----ESKVNSNQFGENIHGNLF 147

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYK 176
           E+ I A+YLD G      F+     ++ +   K        K+ + EW   +  ++  + 
Sbjct: 148 EAFIGAIYLDRGFTYCEMFIRNKIIKQYVDIAKLEGKVISYKSLIIEWCQKE-KISFFFD 206

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
               +G +    F V + I     A+    SK+ AE+ A+   
Sbjct: 207 FVEDNGIEGQKYFGVKLLIDQKIIARARATSKKKAEEKASQRA 249


>gi|262278196|ref|ZP_06055981.1| ribonuclease III [Acinetobacter calcoaceticus RUH2202]
 gi|262258547|gb|EEY77280.1| ribonuclease III [Acinetobacter calcoaceticus RUH2202]
          Length = 155

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 48/151 (31%), Positives = 74/151 (49%), Gaps = 3/151 (1%)

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG-I 132
              +LV  E   ++A +L L+  + +S+   K       SI AD VE++I A+Y+D G +
Sbjct: 1   MRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRESILADTVEAIIGAIYIDSGDL 60

Query: 133 EVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
            +    V K++      ++     +D K+ LQE+  A+    P Y+V    G      F 
Sbjct: 61  NLLTDIVLKWYVPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQHFK 120

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           V   I GL+   G   S+R AEQ AAAE+LK
Sbjct: 121 VECLIDGLSKIYGEGSSRRFAEQAAAAEILK 151


>gi|213158242|ref|YP_002320293.1| ribonuclease III [Acinetobacter baumannii AB0057]
 gi|215482645|ref|YP_002324839.1| Ribonuclease 3 [Acinetobacter baumannii AB307-0294]
 gi|213057402|gb|ACJ42304.1| ribonuclease III [Acinetobacter baumannii AB0057]
 gi|213986369|gb|ACJ56668.1| Ribonuclease 3 [Acinetobacter baumannii AB307-0294]
 gi|322509030|gb|ADX04484.1| rnc [Acinetobacter baumannii 1656-2]
 gi|323519012|gb|ADX93393.1| ribonuclease III [Acinetobacter baumannii TCDC-AB0715]
          Length = 155

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 47/151 (31%), Positives = 73/151 (48%), Gaps = 3/151 (1%)

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG-I 132
              +LV  E   ++A +L L+  + +S+   K       SI AD VE++I A+YLD   +
Sbjct: 1   MRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRESILADTVEAIIGAIYLDSSDL 60

Query: 133 EVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
            +    V K++      ++     +D K+ LQE+  A+    P Y+V    G      F 
Sbjct: 61  NLLKDIVLKWYTPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQHFK 120

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           V   + GL+   G   S+R AEQ AAAE+LK
Sbjct: 121 VECLVDGLSKIHGEGSSRRFAEQAAAAEILK 151


>gi|255521158|ref|ZP_05388395.1| ribonuclease III [Listeria monocytogenes FSL J1-175]
          Length = 147

 Score =  165 bits (418), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 40/144 (27%), Positives = 66/144 (45%), Gaps = 1/144 (0%)

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140
             +  + A  +  + ++R+     K       ++ ADV ES I ALYLD GI+   TF++
Sbjct: 1   EPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFESFIGALYLDNGIDKVVTFLE 60

Query: 141 KYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
           +    +       +  D KT+LQE       V  EY +   +GP H+  F   V ++G  
Sbjct: 61  RVIFPKIDAGAYLQTVDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQV 120

Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223
             +G   +K+ AEQ AA   + + 
Sbjct: 121 LGKGSGRTKKQAEQSAAQFAINQL 144


>gi|33864688|ref|NP_896247.1| putative ribonuclease III [Synechococcus sp. WH 8102]
 gi|33632211|emb|CAE06667.1| putative ribonuclease III [Synechococcus sp. WH 8102]
          Length = 238

 Score =  164 bits (417), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 65/213 (30%), Positives = 103/213 (48%), Gaps = 11/213 (5%)

Query: 5   RYSTLEKRIGYAFAN-RSLL---EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
              +L KR+G    +  SLL   E+A+TH+S      +  ERLEFLGD +L L  +  L 
Sbjct: 8   SLKSLIKRLGLEDMDSPSLLLEVERAMTHTS--SGRTDHNERLEFLGDAVLRLAATLYLD 65

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            H      G+ S     LVS    +++   +D+ S + +      D  +  T+I+AD  E
Sbjct: 66  RHHPGLTVGDSSSLRAQLVSDRWLAELGEAIDIESCLILGVKALGDAAA-RTTIRADATE 124

Query: 121 SLIAALY-LDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           +LI ALY + G +E    ++  +W++ +    +   R + KT LQEW+  +    PEY  
Sbjct: 125 ALIGALYKVSGSLEPILGWLTPHWQRTSADVLAAPHRFNGKTTLQEWSQGQGLGLPEYST 184

Query: 178 TFRSGPDHDP-RFTVVVEISGLAPAQGMDCSKR 209
             RS    DP RF   V ++    A+G   S++
Sbjct: 185 EERSQVHGDPQRFRSTVRVASKVLAEGHGRSRK 217


>gi|94272417|ref|ZP_01292119.1| Ribonuclease III [delta proteobacterium MLMS-1]
 gi|93450139|gb|EAT01469.1| Ribonuclease III [delta proteobacterium MLMS-1]
          Length = 156

 Score =  164 bits (417), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 46/134 (34%), Positives = 64/134 (47%), Gaps = 1/134 (0%)

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           +LV+ E  + +AR+L L  FIR+             SI A   E+L+ A+YLDGG E A 
Sbjct: 1   ALVNEEHLAGMARQLALGEFIRLGRGEEATGGRDKPSILAATFEALVGAVYLDGGYEPAL 60

Query: 137 TFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
             +   +          R  D+K+ LQE    + G  P Y +    GPDHD RFTV VE+
Sbjct: 61  ALLRPLFAPWVANPPLPRISDSKSALQEVLQQRHGEGPVYYLENEEGPDHDKRFTVRVEL 120

Query: 196 SGLAPAQGMDCSKR 209
            G    +G    K+
Sbjct: 121 QGKVLGRGRGRGKK 134


>gi|330983107|gb|EGH81210.1| ribonuclease III [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 132

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 54/134 (40%), Positives = 76/134 (56%), Gaps = 3/134 (2%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           ++  S LE+++GY F ++ L+  ALTH S +     + ERLEFLGD IL  +    LF  
Sbjct: 2   SVSLSRLERQLGYTFKDQELMVLALTHRSFA---GRNNERLEFLGDAILNFVAGEALFER 58

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
              A+EG+LS     LV  ET + +AR  DL  ++R+ S   K       SI AD +E+L
Sbjct: 59  SPQAREGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADALEAL 118

Query: 123 IAALYLDGGIEVAG 136
           I A+YLD G+E A 
Sbjct: 119 IGAIYLDAGMEAAR 132


>gi|159027736|emb|CAO89606.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 234

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 104/208 (50%), Gaps = 10/208 (4%)

Query: 5   RYSTLEKRIGYA---FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +  TL +++G +        LL+ ALTH S+S    ++YE+LEF+GD ++ L+ + +L  
Sbjct: 11  QLKTLVEKLGLSADVPVRWDLLDLALTHPSVSRD--KNYEQLEFVGDSVVRLVAAEVLLE 68

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +  A  GE +   + +VS  T ++ A       ++ VSS    D    ++   AD  E+
Sbjct: 69  TYPEALVGEFAALRSMMVSDRTLAEFADRYGFERYLLVSSSTSIDRAGRISR-LADAFEA 127

Query: 122 LIAALYLD-GGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++ ALYL    + +  +++D+  +++A  ++    R++ K  LQEW  AK+   P+Y V 
Sbjct: 128 VLGALYLSTQTMILVRSWLDEPLREKAAEIRRDPARQNYKDALQEWTQAKYKKLPQYLVK 187

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDC 206
             +G D +  F   V ++      G   
Sbjct: 188 EINGLDQER-FCAEVWLNEQKLGVGTGR 214


>gi|157120736|ref|XP_001659747.1| dicer-1 [Aedes aegypti]
 gi|108883036|gb|EAT47261.1| dicer-1 [Aedes aegypti]
          Length = 2193

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 62/262 (23%), Positives = 99/262 (37%), Gaps = 52/262 (19%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            YS  E  +GY F +RS L +A+TH+S   +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1937 YSAFEDSLGYQFTDRSYLLQAMTHASYCPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1996

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111
                G L+   ++LV+    + +A   D   + R +S  L   +  F+            
Sbjct: 1997 QHSPGALTDLRSALVNNTIFASLAVRHDFHKYFRHLSPGLNDVIDRFVRIQQDNGHIISE 2056

Query: 112  ------------------TSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSG 151
                                   DV ES+  A++LD  +  +               +  
Sbjct: 2057 EYYLISEDECDEAEDVEVPKALGDVFESVAGAIFLDSNMSLDAVWKVYRSMMGPEIEQFS 2116

Query: 152  KFRRDAKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206
                  K+ ++E        AKFG             D   R  V VE+ G    +G+  
Sbjct: 2117 NSV--PKSPIRELLELEPETAKFGKP-------EKLADG-RRVRVTVEVFGKGTFRGIGR 2166

Query: 207  SKRAAEQVAAAEV---LKREGI 225
            + R A+  AA      LK+ G+
Sbjct: 2167 NYRIAKCTAAKCALRQLKKMGL 2188



 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 9/110 (8%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+LS   +  V
Sbjct: 1654 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYCTYENVHEGKLSHLRSKQV 1711

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125
            S     ++ R   L   +  +     D     C ++     ++ ++LI A
Sbjct: 1712 SNLNLYRLGRRKVLGESMIATKFEPHDNWLPPCYYVPK---ELEQALIDA 1758


>gi|294993977|ref|ZP_06799668.1| ribonuclease III [Mycobacterium tuberculosis 210]
          Length = 188

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 49/161 (30%), Positives = 74/161 (45%), Gaps = 6/161 (3%)

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCS 109
           + I+  LF+      EG+L+    S+V+ +  + VAR L    L   + +         +
Sbjct: 1   MTITDALFHRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGA 60

Query: 110 FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHA 167
             +SI AD +ESL+ A+YL  G+E A   + + +      +       D KT LQE   A
Sbjct: 61  DKSSILADGMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAA 120

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
           +    P Y VT  +GPDHD  FT VV +       G+  SK
Sbjct: 121 RGLGAPSYLVTS-TGPDHDKEFTAVVVVMDSEYGSGVGRSK 160


>gi|33862159|ref|NP_893720.1| putative ribonuclease III [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
 gi|33634377|emb|CAE20062.1| putative ribonuclease III [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
          Length = 249

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 61/216 (28%), Positives = 103/216 (47%), Gaps = 13/216 (6%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
           K I + F       +ALTHSS ++    +YE+LEF GD +L L  S  +   + S   G 
Sbjct: 36  KLILHTFN------EALTHSSANNIV--NYEKLEFFGDAVLRLSASDFIERTYKSMSVGS 87

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY-LD 129
            S   + +VS E  +++ +++ +   I        D  S   +I A+  E+LI A+Y   
Sbjct: 88  RSELRSQIVSDEWLTELGKKIFIEKVIIKGPKAMGDENS-KDTIIAETSEALIGAIYKCF 146

Query: 130 GGIEVAGTFVDKYWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD- 186
             I     ++D +WK+ A        + +AK+ LQEW  ++    P YK+   S    D 
Sbjct: 147 NSINEVNIWLDNFWKKDAELYLQAPHKYNAKSALQEWCQSQGFDLPIYKIYEVSKNHGDP 206

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            RF+  + I+G   A     S + AE+ AA+ ++++
Sbjct: 207 KRFSCEIYINGSKKAFSFGHSHKKAEKNAASILIQK 242


>gi|94469424|gb|ABF20201.1| ribonuclease III [Ehrlichia ruminantium]
          Length = 145

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 49/139 (35%), Positives = 77/139 (55%)

Query: 84  CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143
             ++A+ ++L  FI +S   R    +  ++   + +E+LI A+YLDGG++ A  F+  + 
Sbjct: 1   LVEIAQSINLGIFIIMSDGERSCGGAKNSNNLENALEALIGAIYLDGGLKAAKDFIFLFR 60

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203
           K  A       +DAKT LQEWA +K    P Y +  +SGPDH+P FTV V I        
Sbjct: 61  KNSATHMKVPPQDAKTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRIDSHETLHA 120

Query: 204 MDCSKRAAEQVAAAEVLKR 222
              +K+ AEQ AA+ +L++
Sbjct: 121 TGHNKKLAEQKAASLMLEK 139


>gi|257051057|sp|Q8R418|DICER_MOUSE RecName: Full=Endoribonuclease Dicer; AltName:
            Full=Double-strand-specific ribonuclease mDCR-1
          Length = 1916

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 61/252 (24%), Positives = 101/252 (40%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            + T EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1660 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1719

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107
                G L+   ++LV+    + +A + D   + +                 +  +  + +
Sbjct: 1720 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 1779

Query: 108  CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149
             S                +     D+ ESL  A+Y+D G+  EV         +    K 
Sbjct: 1780 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 1839

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1840 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1892

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1893 IAKSAAARRALR 1904



 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 1293 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1350

Query: 79   VSAETCSQVARELDLASFIRVS 100
            VS     ++ ++  L S + VS
Sbjct: 1351 VSNCNLYRLGKKKGLPSRMVVS 1372


>gi|148686840|gb|EDL18787.1| Dicer1, Dcr-1 homolog (Drosophila), isoform CRA_a [Mus musculus]
          Length = 1916

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 61/252 (24%), Positives = 101/252 (40%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            + T EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1660 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1719

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107
                G L+   ++LV+    + +A + D   + +                 +  +  + +
Sbjct: 1720 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 1779

Query: 108  CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149
             S                +     D+ ESL  A+Y+D G+  EV         +    K 
Sbjct: 1780 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 1839

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1840 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1892

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1893 IAKSAAARRALR 1904



 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 1293 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1350

Query: 79   VSAETCSQVARELDLASFIRVS 100
            VS     ++ ++  L S + VS
Sbjct: 1351 VSNCNLYRLGKKKGLPSRMVVS 1372


>gi|148686841|gb|EDL18788.1| Dicer1, Dcr-1 homolog (Drosophila), isoform CRA_b [Mus musculus]
          Length = 1908

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 61/252 (24%), Positives = 101/252 (40%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            + T EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1652 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1711

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107
                G L+   ++LV+    + +A + D   + +                 +  +  + +
Sbjct: 1712 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 1771

Query: 108  CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149
             S                +     D+ ESL  A+Y+D G+  EV         +    K 
Sbjct: 1772 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 1831

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1832 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1884

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1885 IAKSAAARRALR 1896



 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 1285 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1342

Query: 79   VSAETCSQVARELDLASFIRVS 100
            VS     ++ ++  L S + VS
Sbjct: 1343 VSNCNLYRLGKKKGLPSRMVVS 1364


>gi|117168271|ref|NP_683750.2| endoribonuclease Dicer [Mus musculus]
 gi|225000568|gb|AAI72621.1| Dicer1, Dcr-1 homolog (Drosophila) [synthetic construct]
          Length = 1906

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 61/252 (24%), Positives = 101/252 (40%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            + T EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1650 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1709

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107
                G L+   ++LV+    + +A + D   + +                 +  +  + +
Sbjct: 1710 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 1769

Query: 108  CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149
             S                +     D+ ESL  A+Y+D G+  EV         +    K 
Sbjct: 1770 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 1829

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1830 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1882

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1883 IAKSAAARRALR 1894



 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 1283 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1340

Query: 79   VSAETCSQVARELDLASFIRVS 100
            VS     ++ ++  L S + VS
Sbjct: 1341 VSNCNLYRLGKKKGLPSRMVVS 1362


>gi|20385913|gb|AAM21495.1|AF430845_1 dicer-like protein [Mus musculus]
          Length = 1917

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 61/252 (24%), Positives = 101/252 (40%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            + T EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1661 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1720

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107
                G L+   ++LV+    + +A + D   + +                 +  +  + +
Sbjct: 1721 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 1780

Query: 108  CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149
             S                +     D+ ESL  A+Y+D G+  EV         +    K 
Sbjct: 1781 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 1840

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1841 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1893

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1894 IAKSAAARRALR 1905



 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 1294 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1351

Query: 79   VSAETCSQVARELDLASFIRVS 100
            VS     ++ ++  L S + VS
Sbjct: 1352 VSNCNLYRLGKKKGLPSRMVVS 1373


>gi|37360146|dbj|BAC98051.1| mKIAA0928 protein [Mus musculus]
          Length = 1475

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 61/252 (24%), Positives = 101/252 (40%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            + T EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1219 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1278

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107
                G L+   ++LV+    + +A + D   + +                 +  +  + +
Sbjct: 1279 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 1338

Query: 108  CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149
             S                +     D+ ESL  A+Y+D G+  EV         +    K 
Sbjct: 1339 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 1398

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1399 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1451

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1452 IAKSAAARRALR 1463



 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%)

Query: 19  NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 852 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 909

Query: 79  VSAETCSQVARELDLASFIRVS 100
           VS     ++ ++  L S + VS
Sbjct: 910 VSNCNLYRLGKKKGLPSRMVVS 931


>gi|302793023|ref|XP_002978277.1| hypothetical protein SELMODRAFT_108314 [Selaginella moellendorffii]
 gi|300154298|gb|EFJ20934.1| hypothetical protein SELMODRAFT_108314 [Selaginella moellendorffii]
          Length = 1728

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 96/237 (40%), Gaps = 30/237 (12%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            M+++ +  LE  IGY F  +S+L +A++H+S   +    Y+RLEF+GD +L  LI+  LF
Sbjct: 1379 MNSIDFEKLELAIGYKFQMKSVLVEAISHASRPSAGVPCYQRLEFVGDAVLDHLITRYLF 1438

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD-------------- 106
              +     G L+    + V+ E  ++++ +      +R  S   +               
Sbjct: 1439 FRYQDLPPGRLTDLRAAAVNNENFARISVKHSFHLHLRHGSSALEAQIKDFVKDIQSELD 1498

Query: 107  ---------VCSFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRD 156
                            +  D++ES+  A++LD G+     + V +   +  +        
Sbjct: 1499 KPGINSFGIGDFKAPKVLGDILESIAGAIFLDTGLAADEVWKVFERLLEPMVTPDTLPVH 1558

Query: 157  AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
               ELQE    +     EY+ +           TV V + G+      +  K+ A++
Sbjct: 1559 PVRELQERCQQQAEGL-EYRASREGSIA-----TVEVFVDGVQIGCAQNTQKKMAQK 1609



 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 3/91 (3%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             L+  IG+      +L +ALT +S   ++  SYER E LGD  L  ++S  LF       
Sbjct: 1160 QLKHEIGFPIPAAKVL-EALTAASCQETF--SYERAELLGDAYLKWVVSRRLFIKHPRKH 1216

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIR 98
            EG+L+      VS     + A    L S+I+
Sbjct: 1217 EGQLTRMRQQTVSNMVLYEFAISKSLQSYIQ 1247



 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 6/72 (8%)

Query: 161  LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-----QGMD-CSKRAAEQV 214
            L +    +    P+Y++   SGP H  RFT  V ++          +G    S + A+  
Sbjct: 1648 LNDICLQRQWPMPQYRLLSESGPAHAKRFTYTVRVNTRERGWTDECEGQAMPSMKKAKDS 1707

Query: 215  AAAEVLKREGIW 226
            AA  +L+    W
Sbjct: 1708 AALVLLEVLKQW 1719


>gi|170033786|ref|XP_001844757.1| endoribonuclease Dcr-1 [Culex quinquefasciatus]
 gi|167874834|gb|EDS38217.1| endoribonuclease Dcr-1 [Culex quinquefasciatus]
          Length = 2270

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 62/262 (23%), Positives = 99/262 (37%), Gaps = 52/262 (19%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            YS  E  +GY F +RS L +A+TH+S   +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 2014 YSAFEDSLGYRFQDRSYLLQAMTHASYCPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2073

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111
                G L+   ++LV+    + +A   D   + R +S  L   +  F+            
Sbjct: 2074 QHSPGALTDLRSALVNNTIFASLAVRHDFHKYFRHLSPGLNDVIDRFVRIQQDNGHSISE 2133

Query: 112  ------------------TSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSG 151
                                   DV ES+  A++LD  +  +               +  
Sbjct: 2134 EYYLISEDECDEAEDVEVPKALGDVFESVAGAIFLDSNMSLDAVWRVYRGMMGPEIEQFS 2193

Query: 152  KFRRDAKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206
                  K+ ++E        AKFG             D   R  V VE+ G    +G+  
Sbjct: 2194 NSV--PKSPIRELLELEPETAKFGKP-------EKLADG-RRVRVTVEVFGKGTFRGIGR 2243

Query: 207  SKRAAEQVAAAEV---LKREGI 225
            + R A+  AA      LK+ G+
Sbjct: 2244 NYRIAKCTAAKCALRQLKKMGL 2265



 Score = 59.7 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 9/110 (8%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+LS   +  V
Sbjct: 1731 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYCTYENVHEGKLSHLRSKQV 1788

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125
            S     ++ R   L   +  +     D     C ++     ++ ++LI A
Sbjct: 1789 SNLNLYRLGRRKVLGESMIATKFEPHDNWLPPCYYVPK---ELEQALIDA 1835


>gi|302765743|ref|XP_002966292.1| hypothetical protein SELMODRAFT_86110 [Selaginella moellendorffii]
 gi|300165712|gb|EFJ32319.1| hypothetical protein SELMODRAFT_86110 [Selaginella moellendorffii]
          Length = 1730

 Score =  162 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 96/237 (40%), Gaps = 30/237 (12%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            M+++ +  LE  IGY F  +S+L +A++H+S   +    Y+RLEF+GD +L  LI+  LF
Sbjct: 1379 MNSIDFEKLELAIGYKFQMKSVLVEAISHASRPSAGVPCYQRLEFVGDAVLDHLITRYLF 1438

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD-------------- 106
              +     G L+    + V+ E  ++++ +      +R  S   +               
Sbjct: 1439 FRYQDLPPGRLTDLRAAAVNNENFARISVKHSFHLHLRHGSSALEAQIKDFVKDIQSELD 1498

Query: 107  ---------VCSFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRD 156
                            +  D++ES+  A++LD G+     + V +   +  +        
Sbjct: 1499 KPGINSFGIGDFKAPKVLGDILESIAGAIFLDTGLAADEVWKVFERLLEPMVTPDTLPVH 1558

Query: 157  AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
               ELQE    +     EY+ +           TV V + G+      +  K+ A++
Sbjct: 1559 PVRELQERCQQQAEGL-EYRASREGSIA-----TVEVFVDGVQIGCAQNTQKKMAQK 1609



 Score = 66.3 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 3/91 (3%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             L+  IG+      +L +ALT +S   ++  SYER E LGD  L  ++S  LF       
Sbjct: 1160 QLKHEIGFPIPAAKVL-EALTAASCQETF--SYERAELLGDAYLKWVVSRRLFIKHPRKH 1216

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIR 98
            EG+L+      VS     + A    L S+I+
Sbjct: 1217 EGQLTRMRQQTVSNMVLYEFAISKSLQSYIQ 1247



 Score = 55.5 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 6/72 (8%)

Query: 161  LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-----QGMD-CSKRAAEQV 214
            L +    +    P+Y++   SGP H  RFT  V ++          +G    S + A+  
Sbjct: 1648 LNDICLQRQWPMPQYRLLSESGPAHAKRFTYTVRVNTRERGWTDECEGQAMPSMKKAKDS 1707

Query: 215  AAAEVLKREGIW 226
            AA  +L+    W
Sbjct: 1708 AALVLLEVLKQW 1719


>gi|89889945|ref|ZP_01201456.1| ribonuclease III (Rnase III), double-stranded RNA binding motif
           [Flavobacteria bacterium BBFL7]
 gi|89518218|gb|EAS20874.1| ribonuclease III (Rnase III), double-stranded RNA binding motif
           [Flavobacteria bacterium BBFL7]
          Length = 246

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 87/205 (42%), Gaps = 12/205 (5%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           ++K  G    N  +  KA TH S+    +     SYERLEFLGD ILG +I+  ++N   
Sbjct: 23  IKKITGITPKNIDIYRKAFTHKSMSLKDADGNPISYERLEFLGDAILGSVIAEYIYNEVP 82

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG L+   + +VS E  +++  +  L  F +     R        ++  ++ E+L+ 
Sbjct: 83  HGDEGYLTKMRSKIVSREHLNELGLDFGLIDFAKTQVPERNFGA----NVHGNLFEALVG 138

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRS 181
           A+YLD G +    F+ +   +  +   K        K+ L EW       T  Y     +
Sbjct: 139 AIYLDKGYKRTQNFISRRVIEPYVDIEKLEGKVISYKSILIEWCQKNKK-TFNYHTYEDT 197

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDC 206
           G +    F+V + I     A+    
Sbjct: 198 GVNEIRHFSVKLSIDDRVLAKARAT 222


>gi|94469415|gb|ABF20195.1| ribonuclease III [Ehrlichia ruminantium]
          Length = 138

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 49/132 (37%), Positives = 74/132 (56%)

Query: 91  LDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS 150
           ++L  FI +S   R    +  ++   + +E+LI A+YLDGG++ A  F+  +WK  A   
Sbjct: 1   INLGIFIIMSDGERSCGGANNSNNLENALEALIGAIYLDGGLKAAKDFIFLFWKNSATHM 60

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
               +DAKT LQEWA +K    P Y +  +SGPDH+P FTV V I+          +K+ 
Sbjct: 61  KVPPQDAKTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRINSHETLHATGHNKKL 120

Query: 211 AEQVAAAEVLKR 222
           AEQ AA+ +L +
Sbjct: 121 AEQKAASLMLAK 132


>gi|94469430|gb|ABF20205.1| ribonuclease III [Ehrlichia ruminantium]
 gi|100271805|gb|ABF69302.1| ribonuclease III [Ehrlichia ruminantium]
 gi|100271811|gb|ABF69306.1| ribonuclease III [Ehrlichia ruminantium]
 gi|100271844|gb|ABF69328.1| ribonuclease III [Ehrlichia ruminantium]
          Length = 137

 Score =  162 bits (411), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 49/131 (37%), Positives = 73/131 (55%)

Query: 92  DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151
           +L  FI +S   R    +  ++   + +E+LI A+YLDGG++ A  F+  +WK  A    
Sbjct: 1   NLGIFIIMSDGERSCGGAKNSNNLENALEALIGAIYLDGGLKAAKDFIFLFWKNSATHMK 60

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
              +DAKT LQEWA +K    P Y +  +SGPDH+P FTV V I           +K+ A
Sbjct: 61  VPPQDAKTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRIDSHETLHATGHNKKLA 120

Query: 212 EQVAAAEVLKR 222
           EQ AA+ +L++
Sbjct: 121 EQKAASLMLEK 131


>gi|270015102|gb|EFA11550.1| dicer-1 [Tribolium castaneum]
          Length = 1835

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 65/253 (25%), Positives = 103/253 (40%), Gaps = 43/253 (16%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y   E+ IGY F +RS L +ALTH+S S ++  + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1579 YDQFERHIGYKFRDRSYLLQALTHASFSPNTLTDCYQRLEFLGDAVLDYLITRHLYEDTR 1638

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111
                G L+   ++LV+    + +A       + R +S  L + V  F+            
Sbjct: 1639 MHSPGALTDLRSALVNNTIFASLAVRNGFHRYFRNLSPSLNEVVEKFVRLQEDSGHTLVD 1698

Query: 112  ----------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
                                 DV ES+  A++LD G+ +   +   Y   ++       +
Sbjct: 1699 ELYLVVETEEVEDVEVPKALGDVFESVAGAIFLDSGMSLDAVWKVYYNMMKSEIEQFSNK 1758

Query: 156  DAKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
              K+ ++E        AKFG             D   R  V VE+ G    +G+  + R 
Sbjct: 1759 VPKSPIRELLELEPETAKFGKP-------EKLADG-RRVRVTVEVFGKGVFKGIGRNYRI 1810

Query: 211  AEQVAAAEVLKRE 223
            A+  AA   LK  
Sbjct: 1811 AKCTAAKCALKNL 1823



 Score = 67.4 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 9/112 (8%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             ++L +ALT S+ +     + ERLE +GD  L   I+  L++ +++  EG+LS   +  V
Sbjct: 1352 PNVLLQALTMSNANDGI--NLERLETIGDSFLKYAITNYLYSKYENVHEGKLSHLRSKQV 1409

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAALY 127
            S     ++ R   L  ++  +     D     C ++     ++ E+LI A +
Sbjct: 1410 SNLNLYRLGRRKGLGEYMIATKFDPHDNWLPPCFYVPK---ELEEALIDAQF 1458


>gi|324500060|gb|ADY40039.1| Endoribonuclease dcr-1 [Ascaris suum]
          Length = 1970

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 59/259 (22%), Positives = 100/259 (38%), Gaps = 47/259 (18%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
             ++S LE  I Y F +R+ L +A TH+S   +     Y+RLEFLGD +L  +I+  LF H
Sbjct: 1701 FQFSKLEDSICYRFKDRAYLLQAFTHASYYKNRITGCYQRLEFLGDAVLDYVITRFLFQH 1760

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLA---------------SFIRVSSDLRKDV 107
                  G L+   ++LV+    + +A + +                  F+R+ ++     
Sbjct: 1761 PRQYSPGVLTDLRSALVNNTIFASLAVKYNFHKHFVAMCPGLHHMIEKFVRLCAEKNFSG 1820

Query: 108  CSFM----------------------TSIQADVVESLIAALYLDGG--IEVAGTFVDKYW 143
             +F                            D+ ES+  A+YLD G  ++V         
Sbjct: 1821 ANFNAEMYMVTTEEEIDEGEEEDIEVPKAMGDIFESVAGAIYLDSGRSLDVVWRVFYNLM 1880

Query: 144  KQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K+   +      +    EL E    +   +   ++   +G     +  V V+I G     
Sbjct: 1881 KETIEECCNNPPKSPIRELLELEPERARFSKLERIL-ETG-----KVRVTVDIQGKCRFT 1934

Query: 203  GMDCSKRAAEQVAAAEVLK 221
            GM  S R A+  AA   L+
Sbjct: 1935 GMGRSYRIAKCTAAKRALR 1953



 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 2/75 (2%)

Query: 23   LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
            L +ALT S+ S     + ERLE +GD  L   ++  LF+      EG+LS   +  VS  
Sbjct: 1450 LLQALTMSNASDGI--NLERLETVGDSFLKYAVTDYLFHMNPEQHEGKLSFARSKEVSNC 1507

Query: 83   TCSQVARELDLASFI 97
               ++ ++ +L S +
Sbjct: 1508 NLYRLGKKRNLPSLM 1522


>gi|189234048|ref|XP_968993.2| PREDICTED: Dicer-1 [Tribolium castaneum]
          Length = 1865

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 65/253 (25%), Positives = 103/253 (40%), Gaps = 43/253 (16%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y   E+ IGY F +RS L +ALTH+S S ++  + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1609 YDQFERHIGYKFRDRSYLLQALTHASFSPNTLTDCYQRLEFLGDAVLDYLITRHLYEDTR 1668

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111
                G L+   ++LV+    + +A       + R +S  L + V  F+            
Sbjct: 1669 MHSPGALTDLRSALVNNTIFASLAVRNGFHRYFRNLSPSLNEVVEKFVRLQEDSGHTLVD 1728

Query: 112  ----------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
                                 DV ES+  A++LD G+ +   +   Y   ++       +
Sbjct: 1729 ELYLVVETEEVEDVEVPKALGDVFESVAGAIFLDSGMSLDAVWKVYYNMMKSEIEQFSNK 1788

Query: 156  DAKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
              K+ ++E        AKFG             D   R  V VE+ G    +G+  + R 
Sbjct: 1789 VPKSPIRELLELEPETAKFGKP-------EKLADG-RRVRVTVEVFGKGVFKGIGRNYRI 1840

Query: 211  AEQVAAAEVLKRE 223
            A+  AA   LK  
Sbjct: 1841 AKCTAAKCALKNL 1853



 Score = 67.4 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 9/112 (8%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             ++L +ALT S+ +     + ERLE +GD  L   I+  L++ +++  EG+LS   +  V
Sbjct: 1382 PNVLLQALTMSNANDGI--NLERLETIGDSFLKYAITNYLYSKYENVHEGKLSHLRSKQV 1439

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAALY 127
            S     ++ R   L  ++  +     D     C ++     ++ E+LI A +
Sbjct: 1440 SNLNLYRLGRRKGLGEYMIATKFDPHDNWLPPCFYVPK---ELEEALIDAQF 1488


>gi|195109134|ref|XP_001999145.1| GI24348 [Drosophila mojavensis]
 gi|193915739|gb|EDW14606.1| GI24348 [Drosophila mojavensis]
          Length = 2256

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 57/257 (22%), Positives = 97/257 (37%), Gaps = 49/257 (19%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E  +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 2000 FEEFEASLGYTFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2059

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111
                G L+   ++LV+    + +A       + R +S  L   +  F+            
Sbjct: 2060 QHSPGALTDLRSALVNNTIFASLAVRHGFHKYFRHLSPGLNDVIDRFVRIQQENGHCISE 2119

Query: 112  ------------------TSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSG 151
                                   DV ES+  A++LD  +  +V         K    +  
Sbjct: 2120 EYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWQVFSNMMKPEIEQFS 2179

Query: 152  KFRRDAKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206
                  K+ ++E        AKFG             D   R  V V++      +G+  
Sbjct: 2180 NSV--PKSPIRELLELEPETAKFGKP-------EKLADG-RRVRVTVDVFCKGTFRGIGR 2229

Query: 207  SKRAAEQVAAAEVLKRE 223
            + R A+  AA   L++ 
Sbjct: 2230 NYRIAKCTAAKCALRQL 2246



 Score = 65.9 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 9/119 (7%)

Query: 11   KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
            + +G+   + S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+
Sbjct: 1717 ELVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1774

Query: 71   LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125
            LS   +  V+     ++ R   L  ++  +     D     C ++     ++ ++LI A
Sbjct: 1775 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1830


>gi|22830885|dbj|BAC15765.1| double-strand-specific ribonuclease MDCR [Mus musculus]
          Length = 1906

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 61/252 (24%), Positives = 101/252 (40%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            + T EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1650 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1709

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107
                G L+   ++LV+    + +A + D   + +                 +  +  + +
Sbjct: 1710 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 1769

Query: 108  CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149
             S                +     D+ ESL  A+Y+D G+  EV         +    K 
Sbjct: 1770 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 1829

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1830 SANVPRSPVRELLEMEPETAEFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1882

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1883 IAKSAAARRALR 1894



 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 1283 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1340

Query: 79   VSAETCSQVARELDLASFIRVS 100
            VS     ++ ++  L S + VS
Sbjct: 1341 VSNCNLYRLGKKKGLPSRMVVS 1362


>gi|195037032|ref|XP_001989969.1| GH18503 [Drosophila grimshawi]
 gi|193894165|gb|EDV93031.1| GH18503 [Drosophila grimshawi]
          Length = 2254

 Score =  161 bits (409), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 57/257 (22%), Positives = 97/257 (37%), Gaps = 49/257 (19%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E  +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1998 FEEFEASLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2057

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111
                G L+   ++LV+    + +A       + R +S  L   +  F+            
Sbjct: 2058 QHSPGALTDLRSALVNNTIFASLAVRHGFHKYFRHLSPGLNDVIDRFVRIQQENGHSISE 2117

Query: 112  ------------------TSIQADVVESLIAALYLDG--GIEVAGTFVDKYWKQRALKSG 151
                                   DV ES+  A++LD    ++V         K    +  
Sbjct: 2118 EYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSDLSLDVVWRVYSNMMKPEIEQFS 2177

Query: 152  KFRRDAKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206
                  K+ ++E        AKFG             D   R  V V++      +G+  
Sbjct: 2178 NSV--PKSPIRELLELEPETAKFGKP-------EKLADG-RRVRVTVDVFCKGTFRGIGR 2227

Query: 207  SKRAAEQVAAAEVLKRE 223
            + R A+  AA   L++ 
Sbjct: 2228 NYRIAKCTAAKCALRQL 2244



 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 9/119 (7%)

Query: 11   KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
            + +G+   + S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+
Sbjct: 1712 ELVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYMTYENVHEGK 1769

Query: 71   LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125
            LS   +  V+     ++ R   L  ++  +     D     C ++     ++ ++LI A
Sbjct: 1770 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1825


>gi|158334880|ref|YP_001516052.1| ribonuclease III [Acaryochloris marina MBIC11017]
 gi|158305121|gb|ABW26738.1| ribonuclease III [Acaryochloris marina MBIC11017]
          Length = 247

 Score =  161 bits (409), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 66/221 (29%), Positives = 96/221 (43%), Gaps = 18/221 (8%)

Query: 2   SALRYSTLEKRI------GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLI 55
              R   LEK I      G A     LL+ ALTH S S   + +YE+LEF+GD ++ LL 
Sbjct: 5   PPQRQRQLEKLIQRLGLPGNAPIRWDLLDLALTHPSAS--GRANYEQLEFVGDSVVRLLA 62

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           + LL         GE S   + LVS    + +A    L  F+ +     KD      S  
Sbjct: 63  AVLLQAENAQGSVGEWSAIRSVLVSDRHLATLAANYGLDRFLLLGPSTLKDR-RGQDSRL 121

Query: 116 ADVVESLIAALYLDGG-IEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVT 172
           AD  E+++ ALYL  G + +   ++    + +A  ++     ++ K  LQ+W  A +   
Sbjct: 122 ADAFEAVLGALYLSTGDLSLIQPWLQDPLRNKAEQVRIDPAYQNYKAALQQWTQAVYQQL 181

Query: 173 PEYKVTFRSGPDHDP------RFTVVVEISGLAPAQGMDCS 207
           PEY+V   S P  DP      RFT  V +       G   S
Sbjct: 182 PEYRVQETSPPSQDPSDVMADRFTAEVWLQEELLGVGKGHS 222


>gi|257051055|sp|A0MQH0|DICER_CRIGR RecName: Full=Endoribonuclease Dicer
 gi|116831677|gb|ABK28790.1| DICER [Cricetulus griseus]
          Length = 1917

 Score =  161 bits (409), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 60/252 (23%), Positives = 100/252 (39%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1661 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1720

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107
                G L+   ++LV+    + +A + D   + +                 +  +  + +
Sbjct: 1721 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1780

Query: 108  CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149
             S                +     D+ ESL  A+Y+D G+  EV         +    K 
Sbjct: 1781 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKF 1840

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1841 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1893

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1894 IAKSAAARRALR 1905



 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 1293 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1350

Query: 79   VSAETCSQVARELDLASFIRVS 100
            VS     ++ ++  L S + VS
Sbjct: 1351 VSNCNLYRLGKKKGLPSRMVVS 1372


>gi|242008637|ref|XP_002425109.1| dicer-1, putative [Pediculus humanus corporis]
 gi|212508774|gb|EEB12371.1| dicer-1, putative [Pediculus humanus corporis]
          Length = 471

 Score =  161 bits (409), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 59/258 (22%), Positives = 102/258 (39%), Gaps = 52/258 (20%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           Y+ LE+ +GY F  + LL +A+TH S   +     Y+RLEFLGD IL  L++  +  +F 
Sbjct: 220 YTDLEETLGYTFKRKELLLEAITHPSYVRNRLTPCYQRLEFLGDAILDFLVTVYIQENFK 279

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSF------------- 110
               G ++   ++LV+  T + ++ + D   ++   SS L K + +F             
Sbjct: 280 DMNPGLITDIRSALVNNSTLACLSVKYDFHKYLLYTSSPLNKCIENFVKIQISNNHAVNE 339

Query: 111 ------------------MTSIQADVVESLIAALYLDG--GIEVAGTFVDKYWKQRALKS 150
                             +     D+ ESL  A+++D    +E       K  K+   + 
Sbjct: 340 QALITLEENDAIMAESVTVPKALGDIFESLAGAIFIDSENSLETVWNVFYKIMKKELDEF 399

Query: 151 GKFRRDAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGM 204
                  KT    L E      G  P ++ T      ++   +V   I        A G 
Sbjct: 400 TVNP--PKTAVRVLHEIC----GEKPFFETTV-----YEKVVSVKCSIYYKDEEIVAHGF 448

Query: 205 DCSKRAAEQVAAAEVLKR 222
             +K+ A++ A    LK+
Sbjct: 449 GDNKKDAKKSACKMALKQ 466



 Score = 49.7 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 25/59 (42%)

Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
           YE L+ LGD  L    S  LF  + S  EG L+     LV  +         +L +FI
Sbjct: 7  DYENLKILGDSFLKFSCSFFLFKTYPSLHEGILTNVKGKLVGNKNLLDCGVAKNLPNFI 65


>gi|195391256|ref|XP_002054279.1| GJ24359 [Drosophila virilis]
 gi|194152365|gb|EDW67799.1| GJ24359 [Drosophila virilis]
          Length = 2250

 Score =  161 bits (409), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 57/257 (22%), Positives = 98/257 (38%), Gaps = 49/257 (19%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E  +GY F++RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1994 FEEFESSLGYTFSDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2053

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111
                G L+   ++LV+    + +A       + R +S  L   +  F+            
Sbjct: 2054 QHSPGALTDLRSALVNNTIFASLAVRHGFHKYFRHLSPGLNDVIDRFVRIQQENGHIISE 2113

Query: 112  ------------------TSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSG 151
                                   DV ES+  A++LD  +  +V         K    +  
Sbjct: 2114 EYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWQVYSNMMKPEIEQFS 2173

Query: 152  KFRRDAKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206
                  K+ ++E        AKFG             D   R  V V++      +G+  
Sbjct: 2174 NSV--PKSPIRELLELEPETAKFGKP-------EKLADG-RRVRVTVDVFCKGTFRGIGR 2223

Query: 207  SKRAAEQVAAAEVLKRE 223
            + R A+  AA   L++ 
Sbjct: 2224 NYRIAKCTAAKCALRQL 2240



 Score = 65.5 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 9/119 (7%)

Query: 11   KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
              +G+   + S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+
Sbjct: 1708 DLVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1765

Query: 71   LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125
            LS   +  V+     ++ R   L  ++  +     D     C ++     ++ ++LI A
Sbjct: 1766 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1821


>gi|100271817|gb|ABF69310.1| ribonuclease III [Ehrlichia ruminantium]
          Length = 137

 Score =  161 bits (409), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 49/131 (37%), Positives = 73/131 (55%)

Query: 92  DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151
           +L  FI +S   R    +  ++   + +E+LI A+YLDGG++ A  F+  +WK  A    
Sbjct: 1   NLGIFIIMSDGERSCGGAKNSNNLENALEALIGAIYLDGGLKAAKDFIFLFWKNSATHMK 60

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
              +DAKT LQEWA +K    P Y +  +SGPDH+P FTV V I           +K+ A
Sbjct: 61  VPPQDAKTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRIDSHETLHATGHNKKPA 120

Query: 212 EQVAAAEVLKR 222
           EQ AA+ +L++
Sbjct: 121 EQKAASLMLEK 131


>gi|332223646|ref|XP_003260983.1| PREDICTED: endoribonuclease Dicer isoform 1 [Nomascus leucogenys]
 gi|332223648|ref|XP_003260984.1| PREDICTED: endoribonuclease Dicer isoform 2 [Nomascus leucogenys]
          Length = 1922

 Score =  161 bits (408), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 59/252 (23%), Positives = 99/252 (39%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1666 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1725

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107
                G L+   ++LV+    + +A + D   + +                 +  +  + +
Sbjct: 1726 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1785

Query: 108  CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149
             S                +     D+ ESL  A+Y+D G+  E          +    K 
Sbjct: 1786 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1845

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1846 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1898

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1899 IAKSAAARRALR 1910



 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 1293 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1350

Query: 79   VSAETCSQVARELDLASFIRVS 100
            VS     ++ ++  L S + VS
Sbjct: 1351 VSNCNLYRLGKKKGLPSRMVVS 1372


>gi|297695799|ref|XP_002825114.1| PREDICTED: endoribonuclease Dicer-like isoform 1 [Pongo abelii]
 gi|297695801|ref|XP_002825115.1| PREDICTED: endoribonuclease Dicer-like isoform 2 [Pongo abelii]
 gi|297695803|ref|XP_002825116.1| PREDICTED: endoribonuclease Dicer-like isoform 3 [Pongo abelii]
          Length = 1922

 Score =  161 bits (408), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 59/252 (23%), Positives = 99/252 (39%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1666 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1725

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107
                G L+   ++LV+    + +A + D   + +                 +  +  + +
Sbjct: 1726 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1785

Query: 108  CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149
             S                +     D+ ESL  A+Y+D G+  E          +    K 
Sbjct: 1786 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1845

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1846 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1898

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1899 IAKSAAARRALR 1910



 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 13   IGYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            IGY+      N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A E
Sbjct: 1283 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1340

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVS 100
            G LS   +  VS     ++ ++  L S + VS
Sbjct: 1341 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1372


>gi|296215831|ref|XP_002754304.1| PREDICTED: endoribonuclease Dicer isoform 1 [Callithrix jacchus]
 gi|296215833|ref|XP_002754305.1| PREDICTED: endoribonuclease Dicer isoform 2 [Callithrix jacchus]
 gi|296215835|ref|XP_002754306.1| PREDICTED: endoribonuclease Dicer isoform 3 [Callithrix jacchus]
          Length = 1922

 Score =  161 bits (408), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 59/252 (23%), Positives = 99/252 (39%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1666 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1725

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107
                G L+   ++LV+    + +A + D   + +                 +  +  + +
Sbjct: 1726 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1785

Query: 108  CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149
             S                +     D+ ESL  A+Y+D G+  E          +    K 
Sbjct: 1786 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1845

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1846 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1898

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1899 IAKSAAARRALR 1910



 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 13   IGYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            IGY+      N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A E
Sbjct: 1283 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1340

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVS 100
            G LS   +  VS     ++ ++  L S + VS
Sbjct: 1341 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1372


>gi|193787170|dbj|BAG52376.1| unnamed protein product [Homo sapiens]
          Length = 820

 Score =  161 bits (408), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 59/252 (23%), Positives = 99/252 (39%), Gaps = 43/252 (17%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 564 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 623

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107
               G L+   ++LV+    + +A + D   + +                 +  +  + +
Sbjct: 624 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 683

Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149
            S                +     D+ ESL  A+Y+D G+  E          +    K 
Sbjct: 684 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 743

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 744 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 796

Query: 210 AAEQVAAAEVLK 221
            A+  AA   L+
Sbjct: 797 IAKSAAARRALR 808



 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 13  IGYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           IGY+      N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A E
Sbjct: 181 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 238

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVS 100
           G LS   +  VS     ++ ++  L S + VS
Sbjct: 239 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 270


>gi|193786026|dbj|BAG51002.1| unnamed protein product [Homo sapiens]
          Length = 554

 Score =  161 bits (408), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 59/252 (23%), Positives = 99/252 (39%), Gaps = 43/252 (17%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 298 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 357

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107
               G L+   ++LV+    + +A + D   + +                 +  +  + +
Sbjct: 358 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 417

Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149
            S                +     D+ ESL  A+Y+D G+  E          +    K 
Sbjct: 418 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 477

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 478 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 530

Query: 210 AAEQVAAAEVLK 221
            A+  AA   L+
Sbjct: 531 IAKSAAARRALR 542


>gi|119602001|gb|EAW81595.1| Dicer1, Dcr-1 homolog (Drosophila), isoform CRA_a [Homo sapiens]
          Length = 1923

 Score =  161 bits (408), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 59/252 (23%), Positives = 99/252 (39%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1667 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1726

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107
                G L+   ++LV+    + +A + D   + +                 +  +  + +
Sbjct: 1727 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1786

Query: 108  CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149
             S                +     D+ ESL  A+Y+D G+  E          +    K 
Sbjct: 1787 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1846

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1847 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1899

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1900 IAKSAAARRALR 1911



 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 13   IGYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            IGY+      N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A E
Sbjct: 1284 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1341

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVS 100
            G LS   +  VS     ++ ++  L S + VS
Sbjct: 1342 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1373


>gi|114654613|ref|XP_001154199.1| PREDICTED: dicer1 isoform 3 [Pan troglodytes]
 gi|114654615|ref|XP_001154247.1| PREDICTED: dicer1 isoform 4 [Pan troglodytes]
 gi|114654617|ref|XP_001154306.1| PREDICTED: dicer1 isoform 5 [Pan troglodytes]
 gi|114654619|ref|XP_001154369.1| PREDICTED: endoribonuclease Dicer isoform 6 [Pan troglodytes]
          Length = 1922

 Score =  161 bits (408), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 59/252 (23%), Positives = 99/252 (39%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1666 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1725

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107
                G L+   ++LV+    + +A + D   + +                 +  +  + +
Sbjct: 1726 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1785

Query: 108  CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149
             S                +     D+ ESL  A+Y+D G+  E          +    K 
Sbjct: 1786 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1845

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1846 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1898

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1899 IAKSAAARRALR 1910



 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 13   IGYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            IGY+      N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A E
Sbjct: 1283 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1340

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVS 100
            G LS   +  VS     ++ ++  L S + VS
Sbjct: 1341 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1372


>gi|114654611|ref|XP_001154010.1| PREDICTED: dicer1 isoform 1 [Pan troglodytes]
          Length = 1930

 Score =  161 bits (408), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 59/252 (23%), Positives = 99/252 (39%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1666 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1725

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107
                G L+   ++LV+    + +A + D   + +                 +  +  + +
Sbjct: 1726 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1785

Query: 108  CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149
             S                +     D+ ESL  A+Y+D G+  E          +    K 
Sbjct: 1786 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1845

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1846 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1898

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1899 IAKSAAARRALR 1910



 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 13   IGYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            IGY+      N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A E
Sbjct: 1283 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1340

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVS 100
            G LS   +  VS     ++ ++  L S + VS
Sbjct: 1341 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1372


>gi|109084784|ref|XP_001100868.1| PREDICTED: endoribonuclease Dicer [Macaca mulatta]
          Length = 1920

 Score =  161 bits (408), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 59/252 (23%), Positives = 99/252 (39%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1664 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1723

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107
                G L+   ++LV+    + +A + D   + +                 +  +  + +
Sbjct: 1724 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1783

Query: 108  CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149
             S                +     D+ ESL  A+Y+D G+  E          +    K 
Sbjct: 1784 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1843

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1844 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1896

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1897 IAKSAAARRALR 1908



 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 13   IGYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            IGY+      N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A E
Sbjct: 1281 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1338

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVS 100
            G LS   +  VS     ++ ++  L S + VS
Sbjct: 1339 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1370


>gi|29294649|ref|NP_085124.2| endoribonuclease Dicer isoform 1 [Homo sapiens]
 gi|29294651|ref|NP_803187.1| endoribonuclease Dicer isoform 1 [Homo sapiens]
 gi|257051056|sp|Q9UPY3|DICER_HUMAN RecName: Full=Endoribonuclease Dicer; AltName: Full=Helicase with
            RNase motif; Short=Helicase MOI
 gi|20521696|dbj|BAA76772.2| KIAA0928 protein [Homo sapiens]
 gi|119602002|gb|EAW81596.1| Dicer1, Dcr-1 homolog (Drosophila), isoform CRA_b [Homo sapiens]
 gi|152012889|gb|AAI50288.1| Dicer 1, ribonuclease type III [Homo sapiens]
 gi|307685563|dbj|BAJ20712.1| dicer 1, ribonuclease type III [synthetic construct]
          Length = 1922

 Score =  161 bits (408), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 59/252 (23%), Positives = 99/252 (39%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1666 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1725

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107
                G L+   ++LV+    + +A + D   + +                 +  +  + +
Sbjct: 1726 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1785

Query: 108  CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149
             S                +     D+ ESL  A+Y+D G+  E          +    K 
Sbjct: 1786 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1845

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1846 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1898

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1899 IAKSAAARRALR 1910



 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 13   IGYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            IGY+      N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A E
Sbjct: 1283 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1340

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVS 100
            G LS   +  VS     ++ ++  L S + VS
Sbjct: 1341 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1372


>gi|21665773|emb|CAB38857.2| hypothetical helicase K12H4.8-like protein [Homo sapiens]
          Length = 1912

 Score =  161 bits (408), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 59/252 (23%), Positives = 99/252 (39%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1656 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1715

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107
                G L+   ++LV+    + +A + D   + +                 +  +  + +
Sbjct: 1716 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1775

Query: 108  CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149
             S                +     D+ ESL  A+Y+D G+  E          +    K 
Sbjct: 1776 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1835

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1836 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1888

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1889 IAKSAAARRALR 1900



 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 13   IGYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            IGY+      N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A E
Sbjct: 1273 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1330

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVS 100
            G LS   +  VS     ++ ++  L S + VS
Sbjct: 1331 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1362


>gi|5019620|dbj|BAA78691.1| helicase-MOI [Homo sapiens]
          Length = 1924

 Score =  161 bits (408), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 59/252 (23%), Positives = 99/252 (39%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1668 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1727

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107
                G L+   ++LV+    + +A + D   + +                 +  +  + +
Sbjct: 1728 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1787

Query: 108  CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149
             S                +     D+ ESL  A+Y+D G+  E          +    K 
Sbjct: 1788 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1847

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1848 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1900

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1901 IAKSAAARRALR 1912



 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 13   IGYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            IGY+      N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A E
Sbjct: 1285 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1342

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVS 100
            G LS   +  VS     ++ ++  L S + VS
Sbjct: 1343 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1374


>gi|74204500|dbj|BAE23515.1| unnamed protein product [Mus musculus]
          Length = 514

 Score =  161 bits (408), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 61/252 (24%), Positives = 101/252 (40%), Gaps = 43/252 (17%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           + T EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 258 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 317

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107
               G L+   ++LV+    + +A + D   + +                 +  +  + +
Sbjct: 318 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 377

Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149
            S                +     D+ ESL  A+Y+D G+  EV         +    K 
Sbjct: 378 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 437

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 438 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 490

Query: 210 AAEQVAAAEVLK 221
            A+  AA   L+
Sbjct: 491 IAKSAAARRALR 502


>gi|193216954|ref|YP_002000196.1| ribonuclease III [Mycoplasma arthritidis 158L3-1]
 gi|193002277|gb|ACF07492.1| ribonuclease III [Mycoplasma arthritidis 158L3-1]
          Length = 222

 Score =  161 bits (408), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 54/212 (25%), Positives = 90/212 (42%), Gaps = 9/212 (4%)

Query: 16  AFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
                  + K+LTH S   S  ++ +YE LEFLGD +L    S  +F +F    EGE + 
Sbjct: 11  KIRRPEFVFKSLTHKSFDQSDHFKFNYEYLEFLGDAVLEFYTSDRIFQNFPKYTEGEATR 70

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF-MTSIQADVVESLIAALYLDGGI 132
               +VS E  +++A ++ L    R    + +++ +   + + +D+ ES I ALY   GI
Sbjct: 71  HRQMIVSNENLAKIAHKIGLVEIARFGKKVFEEIKNIPNSKVFSDMFESFIGALYFGLGI 130

Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKF-GVTPEYKVTFRSGPDHDPRFTV 191
                ++D       L      +D K+  QE   A        Y    +    ++  F  
Sbjct: 131 GPTFQYLDSVLLDSVLNVID-SKDPKSYFQEIIQANGNLSRLRYVTVAQ----NNGEFKS 185

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            + +       G   SK+ AE+ AA   LK+ 
Sbjct: 186 ELLVDQKVFGVGYGHSKKQAEKAAAISALKKM 217


>gi|100271808|gb|ABF69304.1| ribonuclease III [Ehrlichia ruminantium]
 gi|100271814|gb|ABF69308.1| ribonuclease III [Ehrlichia ruminantium]
 gi|100271820|gb|ABF69312.1| ribonuclease III [Ehrlichia ruminantium]
 gi|100271823|gb|ABF69314.1| ribonuclease III [Ehrlichia ruminantium]
 gi|100271826|gb|ABF69316.1| ribonuclease III [Ehrlichia ruminantium]
 gi|100271829|gb|ABF69318.1| ribonuclease III [Ehrlichia ruminantium]
 gi|100271835|gb|ABF69322.1| ribonuclease III [Ehrlichia ruminantium]
 gi|100271847|gb|ABF69330.1| ribonuclease III [Ehrlichia ruminantium]
 gi|108951328|gb|ABG25048.1| ribonuclease III [Ehrlichia ruminantium]
 gi|108951331|gb|ABG25050.1| ribonuclease III [Ehrlichia ruminantium]
          Length = 137

 Score =  161 bits (408), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 49/131 (37%), Positives = 73/131 (55%)

Query: 92  DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151
           +L  FI +S   R    +  ++   + +E+LI A+YLDGG++ A  F+  +WK  A    
Sbjct: 1   NLGIFIIMSDGERSCGGANNSNNLENALEALIGAIYLDGGLKAAKDFIFLFWKNSATHMK 60

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
              +DAKT LQEWA +K    P Y +  +SGPDH+P FTV V I+          +K+ A
Sbjct: 61  VPPQDAKTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRINSHETLHATGHNKKLA 120

Query: 212 EQVAAAEVLKR 222
           EQ AA+ +L +
Sbjct: 121 EQKAASLMLAK 131


>gi|32488296|emb|CAE03362.1| OSJNBb0065L13.5 [Oryza sativa Japonica Group]
 gi|116311061|emb|CAH67991.1| OSIGBa0157K09-H0214G12.2 [Oryza sativa Indica Group]
          Length = 1604

 Score =  161 bits (408), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 92/244 (37%), Gaps = 24/244 (9%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            M     + LE+ IGY F ++ LL +A  H S S      Y+RLEFLGD +L  +I++ L+
Sbjct: 1156 MDYTDIAGLEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLY 1215

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR---------VSSDLRKDVCSFM 111
            + +   K G+++   +  V  ++ +  A E  +   +          +S        S  
Sbjct: 1216 STYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNS 1275

Query: 112  ----------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTE 160
                           D+VES I A+ LD G  +   + V     +  L       +   E
Sbjct: 1276 EKDLLEEPACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHTNPMRE 1335

Query: 161  LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEV 219
            L+E            K     G  H     V V I          + + +AA + AA E 
Sbjct: 1336 LRELCQCHGFELGLPKPMKADGEYHVK---VEVNIKSKIIICTAANRNSKAARKFAAQET 1392

Query: 220  LKRE 223
            L + 
Sbjct: 1393 LSKL 1396



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 48/140 (34%), Gaps = 40/140 (28%)

Query: 41   ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI--- 97
            ER E LGD  L  ++    F  ++   EG+L+ R + +V+     +++    L  +I   
Sbjct: 990  ERFEVLGDAFLKYVVGRHKFITYEGLDEGQLTRRRSDVVNNSHLYELSIRKKLQVYIRDQ 1049

Query: 98   ------------------------RVSSDLRKDVCSFM-------------TSIQADVVE 120
                                    R+                           + ADVVE
Sbjct: 1050 QFEPTQFFAPGRPCKVVCNTDVEVRLHQMDIHPDNRENCNLRCTRSHHWLHRKVIADVVE 1109

Query: 121  SLIAALYLDGGIEVAGTFVD 140
            SLI A  ++GG + A  F+ 
Sbjct: 1110 SLIGAFLVEGGFKAAFAFLH 1129



 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 10/78 (12%)

Query: 157  AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VVVEISG----LAPAQGMDC-SKR 209
            A++ L E   A +   PE+K+    GP H  +FT  VVVEI G    L          K+
Sbjct: 1517 ARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKGASATLLECHSDGKLQKK 1576

Query: 210  AAEQVAAAEV---LKREG 224
            AA++ AA      LK+ G
Sbjct: 1577 AAQEHAAQGALWCLKQLG 1594


>gi|195443910|ref|XP_002069632.1| GK11626 [Drosophila willistoni]
 gi|194165717|gb|EDW80618.1| GK11626 [Drosophila willistoni]
          Length = 2281

 Score =  161 bits (408), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 97/257 (37%), Gaps = 49/257 (19%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E  +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 2025 FEEFEAILGYRFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2084

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111
                G L+   ++LV+    + +A       F R +S  L   +  F+            
Sbjct: 2085 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHCISE 2144

Query: 112  ------------------TSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSG 151
                                   DV ES+  A++LD  +  +V         K    +  
Sbjct: 2145 EYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMKPEIEQFS 2204

Query: 152  KFRRDAKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206
                  K+ ++E        AKFG             D   R  V V++      +G+  
Sbjct: 2205 NSV--PKSPIRELLELEPETAKFGKP-------EKLADG-RRVRVTVDVFCKGTFRGIGR 2254

Query: 207  SKRAAEQVAAAEVLKRE 223
            + R A+  AA   L++ 
Sbjct: 2255 NYRIAKCTAAKCALRQL 2271



 Score = 64.7 bits (157), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 9/119 (7%)

Query: 11   KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
              +G+   + S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+
Sbjct: 1739 DLVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1796

Query: 71   LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125
            LS   +  V+     ++ R   L  ++  +     D     C ++     ++ ++LI A
Sbjct: 1797 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1852


>gi|195331135|ref|XP_002032258.1| GM23619 [Drosophila sechellia]
 gi|194121201|gb|EDW43244.1| GM23619 [Drosophila sechellia]
          Length = 2249

 Score =  161 bits (408), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 57/257 (22%), Positives = 97/257 (37%), Gaps = 49/257 (19%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1993 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2052

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111
                G L+   ++LV+    + +A       F R +S  L   +  F+            
Sbjct: 2053 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHSISE 2112

Query: 112  ------------------TSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSG 151
                                   DV ES+  A++LD  +  +V              +  
Sbjct: 2113 EYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFS 2172

Query: 152  KFRRDAKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206
                  K+ ++E        AKFG             D   R  V V++      +G+  
Sbjct: 2173 NSV--PKSPIRELLELEPETAKFGKP-------EKLADG-RRVRVTVDVFCKGTFRGIGR 2222

Query: 207  SKRAAEQVAAAEVLKRE 223
            + R A+  AA   L++ 
Sbjct: 2223 NYRIAKCTAAKCALRQL 2239



 Score = 65.1 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 9/119 (7%)

Query: 11   KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
              +G+   + S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+
Sbjct: 1714 DLVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1771

Query: 71   LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125
            LS   +  V+     ++ R   L  ++  +     D     C ++     ++ ++LI A
Sbjct: 1772 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1827


>gi|17738129|ref|NP_524453.1| Dicer-1 [Drosophila melanogaster]
 gi|51316117|sp|Q9VCU9|DCR1_DROME RecName: Full=Endoribonuclease Dcr-1; Short=Protein dicer-1
 gi|7300916|gb|AAF56056.1| Dicer-1 [Drosophila melanogaster]
          Length = 2249

 Score =  161 bits (408), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 57/257 (22%), Positives = 97/257 (37%), Gaps = 49/257 (19%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1993 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2052

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111
                G L+   ++LV+    + +A       F R +S  L   +  F+            
Sbjct: 2053 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHCISE 2112

Query: 112  ------------------TSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSG 151
                                   DV ES+  A++LD  +  +V              +  
Sbjct: 2113 EYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFS 2172

Query: 152  KFRRDAKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206
                  K+ ++E        AKFG             D   R  V V++      +G+  
Sbjct: 2173 NSV--PKSPIRELLELEPETAKFGKP-------EKLADG-RRVRVTVDVFCKGTFRGIGR 2222

Query: 207  SKRAAEQVAAAEVLKRE 223
            + R A+  AA   L++ 
Sbjct: 2223 NYRIAKCTAAKCALRQL 2239



 Score = 65.1 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 9/119 (7%)

Query: 11   KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
              +G+   + S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+
Sbjct: 1714 DLVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1771

Query: 71   LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125
            LS   +  V+     ++ R   L  ++  +     D     C ++     ++ ++LI A
Sbjct: 1772 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1827


>gi|251764670|sp|A7LFZ6|DCL4_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 4; AltName:
            Full=Dicer-like protein 4; Short=OsDCL4; AltName:
            Full=Protein SHOOT ORGANIZATION 1
 gi|152926631|gb|ABS32306.1| dicer-like protein [Oryza sativa Japonica Group]
          Length = 1657

 Score =  161 bits (407), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 92/244 (37%), Gaps = 24/244 (9%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            M     + LE+ IGY F ++ LL +A  H S S      Y+RLEFLGD +L  +I++ L+
Sbjct: 1209 MDYTDIAGLEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLY 1268

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR---------VSSDLRKDVCSFM 111
            + +   K G+++   +  V  ++ +  A E  +   +          +S        S  
Sbjct: 1269 STYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNS 1328

Query: 112  ----------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTE 160
                           D+VES I A+ LD G  +   + V     +  L       +   E
Sbjct: 1329 EKDLLEEPACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHTNPMRE 1388

Query: 161  LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEV 219
            L+E            K     G  H     V V I          + + +AA + AA E 
Sbjct: 1389 LRELCQCHGFELGLPKPMKADGEYHVK---VEVNIKSKIIICTAANRNSKAARKFAAQET 1445

Query: 220  LKRE 223
            L + 
Sbjct: 1446 LSKL 1449



 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 48/140 (34%), Gaps = 40/140 (28%)

Query: 41   ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
            ER E LGD  L  ++    F  ++   EG+L+ R + +V+     +++    L  +IR  
Sbjct: 1043 ERFEVLGDAFLKYVVGRHKFITYEGLDEGQLTRRRSDVVNNSHLYELSIRKKLQVYIRDQ 1102

Query: 101  SDL----------------------------------------RKDVCSFMTSIQADVVE 120
                                                        +        + ADVVE
Sbjct: 1103 QFEPTQFFAPGRPCKVVCNTDVEVRLHQMDIHPDNRENCNLRCTRSHHWLHRKVIADVVE 1162

Query: 121  SLIAALYLDGGIEVAGTFVD 140
            SLI A  ++GG + A  F+ 
Sbjct: 1163 SLIGAFLVEGGFKAAFAFLH 1182



 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 10/78 (12%)

Query: 157  AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VVVEISG----LAPAQGMDC-SKR 209
            A++ L E   A +   PE+K+    GP H  +FT  VVVEI G    L          K+
Sbjct: 1570 ARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKGASATLLECHSDGKLQKK 1629

Query: 210  AAEQVAAAEV---LKREG 224
            AA++ AA      LK+ G
Sbjct: 1630 AAQEHAAQGALWCLKQLG 1647


>gi|294660491|ref|NP_853275.2| ribonuclease 3 [Mycoplasma gallisepticum str. R(low)]
 gi|284812153|gb|AAP56843.2| Ribonuclease 3 (Ribonuclease III) [Mycoplasma gallisepticum str.
           R(low)]
 gi|284930761|gb|ADC30700.1| Ribonuclease 3 (Ribonuclease III) [Mycoplasma gallisepticum str.
           R(high)]
 gi|284931334|gb|ADC31272.1| Ribonuclease 3 (Ribonuclease III) [Mycoplasma gallisepticum str. F]
          Length = 655

 Score =  161 bits (407), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 103/226 (45%), Gaps = 12/226 (5%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLL 59
            A     L K+      N  L E+ALTH+S ++    + +Y+RLEFLGD I+  +++  L
Sbjct: 428 EAKDLELLLKKFKVVTNNIGLYEEALTHNSYANEMHLKYNYQRLEFLGDAIINKIVAEYL 487

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           FNH   + EGE++     ++ + T  + A +L+L ++IRV   L+  +      I  D+ 
Sbjct: 488 FNH-SDSSEGEMTKDRIKIIQSNTLIKAATQLELINYIRVGEGLK--IAPLSPKILEDIF 544

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFG-VTPEY-K 176
           E+ I A+YLD G       ++        K       D K+  QE  H+    +   Y +
Sbjct: 545 EAFIGAMYLDQGEYAVRKILNDTIIGYYQKGQLTENTDYKSIFQEIIHSTGLNMKIHYER 604

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              R    H    TV +   G+   +G D S   AE  AA E + +
Sbjct: 605 TYDRQKNLH----TVSLYAGGIMYGEGKDSSTHKAEIKAAKEAISK 646


>gi|321461347|gb|EFX72380.1| hypothetical protein DAPPUDRAFT_308316 [Daphnia pulex]
          Length = 1741

 Score =  161 bits (407), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 56/248 (22%), Positives = 103/248 (41%), Gaps = 42/248 (16%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            + + E++I Y F +RS L +A +H+S   +   + Y+RLEFLGD +L  LI+  L+ +  
Sbjct: 1490 FESFEEKICYKFNDRSYLLQAFSHASYYLNRLTDCYQRLEFLGDAVLDYLITRYLYENLP 1549

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS--------------- 109
                G L+   ++LV+  T + +A   +   + +  S     +                 
Sbjct: 1550 RHPPGALTDLRSALVNNTTFAVLAERYEFHRYFKHLSPSLNQIMDKFIKAQEENGHSINE 1609

Query: 110  ----------FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-AK 158
                       +  +  DV ES+  A+YLD  + +   +   Y+     +  +F ++  K
Sbjct: 1610 EYYMIEAEDVEVPKVLGDVFESVAGAIYLDSHMSLNAVW-RVYYNMMKKEIDEFSKNVPK 1668

Query: 159  TELQEWA-----HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            + ++E         KFG            PD   R  V V++ G    +G+  + R A+ 
Sbjct: 1669 SPIRELLELETDRVKFGK-------AERLPDG--RLRVTVDVIGKGTFKGIGRNYRIAKC 1719

Query: 214  VAAAEVLK 221
             AA   L+
Sbjct: 1720 TAAKYALR 1727



 Score = 58.2 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 2/78 (2%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             S++ +A T SS +     + ERLE +GD  L   I+T L+  + S  EGELS   +  V
Sbjct: 1239 PSVILQAFTMSSANDGI--NLERLETIGDSFLKYAITTYLYCKYSSIHEGELSHLRSRQV 1296

Query: 80   SAETCSQVARELDLASFI 97
            S     Q+ ++      +
Sbjct: 1297 SNLHLYQLGKKKLFGGCM 1314


>gi|6102924|emb|CAB59269.1| hypothetical protein [Homo sapiens]
          Length = 525

 Score =  161 bits (407), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 59/252 (23%), Positives = 99/252 (39%), Gaps = 43/252 (17%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 269 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 328

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107
               G L+   ++LV+    + +A + D   + +                 +  +  + +
Sbjct: 329 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 388

Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149
            S                +     D+ ESL  A+Y+D G+  E          +    K 
Sbjct: 389 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 448

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 449 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 501

Query: 210 AAEQVAAAEVLK 221
            A+  AA   L+
Sbjct: 502 IAKSAAAKRALR 513


>gi|254281220|ref|NP_001123390.2| endoribonuclease Dicer [Xenopus (Silurana) tropicalis]
 gi|238064965|sp|B3DLA6|DICER_XENTR RecName: Full=Endoribonuclease Dicer
 gi|169261418|gb|ACA52289.1| endoribonuclease [Xenopus tropicalis]
          Length = 1893

 Score =  161 bits (407), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 59/252 (23%), Positives = 99/252 (39%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1637 FENFEKKINYPFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1696

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107
                G L+   ++LV+    + +A + D   + +                 +  +  + +
Sbjct: 1697 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAISPELFHVIDDFVQFQLEKNEMQGM 1756

Query: 108  CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149
             S                +     D+ ESL  A+Y+D G+  E          +    K 
Sbjct: 1757 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWHVYYPMMQPLIEKF 1816

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1817 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1869

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1870 IAKSAAARRALR 1881



 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 1270 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1327

Query: 79   VSAETCSQVARELD 92
            VS     ++ ++  
Sbjct: 1328 VSNCNLYRLGKKKG 1341


>gi|78780081|ref|YP_398193.1| RNAse III [Prochlorococcus marinus str. MIT 9312]
 gi|78713580|gb|ABB50757.1| RNAse III [Prochlorococcus marinus str. MIT 9312]
          Length = 249

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 58/225 (25%), Positives = 101/225 (44%), Gaps = 9/225 (4%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
            + R+S + ++   +        +A  HSS       +YE+LEF GD +L L  S  +  
Sbjct: 23  KSERFSEIIRKQNISVIQD--FNQAFIHSS--EDKIINYEKLEFFGDAVLRLAASNFIEK 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           ++     GE S     +VS E  +++ R++D+   I        D  S  T I  +  E+
Sbjct: 79  NYPQMSVGERSELRAQIVSDEWLTKLGRKIDIEKLIIKGPKALGDQNSKNT-IIGEATEA 137

Query: 122 LIAALY-LDGGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           LI A+Y     I+    ++D  W++         ++  +KT LQEW  +K    P YK+ 
Sbjct: 138 LIGAVYKCFNSIQEVNLWLDDIWEEDSEIFLKAPYKFKSKTVLQEWCQSKGFDLPVYKII 197

Query: 179 FRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             S  + D  RF+  + + GL  +     S + AE  AA  ++++
Sbjct: 198 EVSKKNGDPKRFSCDIFVEGLKESSAFGKSHKQAETNAAKVLIEK 242


>gi|19072784|gb|AAL84637.1|AF484523_1 endoribonuclease Dicer [Mus musculus]
          Length = 361

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 61/252 (24%), Positives = 101/252 (40%), Gaps = 43/252 (17%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           + T EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 105 FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 164

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107
               G L+   ++LV+    + +A + D   + +                 +  +  + +
Sbjct: 165 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 224

Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149
            S                +     D+ ESL  A+Y+D G+  EV         +    K 
Sbjct: 225 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 284

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 285 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 337

Query: 210 AAEQVAAAEVLK 221
            A+  AA   L+
Sbjct: 338 IAKSAAARRALR 349


>gi|194225335|ref|XP_001496219.2| PREDICTED: similar to Endoribonuclease Dicer (Helicase with RNase
            motif) (Helicase MOI) [Equus caballus]
          Length = 1785

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 59/252 (23%), Positives = 100/252 (39%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1529 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1588

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107
                G L+   ++LV+    + +A + D   + +                 +  +  + +
Sbjct: 1589 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1648

Query: 108  CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149
             S                +     D+ ESL  A+Y+D G+  E+         +    K 
Sbjct: 1649 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1708

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1709 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1761

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1762 IAKSAAARRALR 1773



 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 1158 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1215

Query: 79   VSAETCSQVARELDLASFIRVS 100
            VS     ++ ++  L S + VS
Sbjct: 1216 VSNCNLYRLGKKKGLPSRMVVS 1237


>gi|157279689|dbj|BAF80150.1| SHOOT ORGANIZATION1 [Oryza sativa Japonica Group]
          Length = 1631

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 92/244 (37%), Gaps = 24/244 (9%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            M     + LE+ IGY F ++ LL +A  H S S      Y+RLEFLGD +L  +I++ L+
Sbjct: 1183 MDYTDIAGLEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLY 1242

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR---------VSSDLRKDVCSFM 111
            + +   K G+++   +  V  ++ +  A E  +   +          +S        S  
Sbjct: 1243 STYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNS 1302

Query: 112  ----------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTE 160
                           D+VES I A+ LD G  +   + V     +  L       +   E
Sbjct: 1303 EKDLLEEPACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHTNPMRE 1362

Query: 161  LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEV 219
            L+E            K     G  H     V V I          + + +AA + AA E 
Sbjct: 1363 LRELCQCHGFELGLPKPMKADGEYHVK---VEVNIKSKIIICTAANRNSKAARKFAAQET 1419

Query: 220  LKRE 223
            L + 
Sbjct: 1420 LSKL 1423



 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 48/140 (34%), Gaps = 40/140 (28%)

Query: 41   ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI--- 97
            ER E LGD  L  ++    F  ++   EG+L+ R + +V+     +++    L  +I   
Sbjct: 1017 ERFEVLGDAFLKYVVGRHKFITYEGLDEGQLTRRRSDVVNNSHLYELSIRKKLQVYIRDQ 1076

Query: 98   ------------------------RVSSDLRKDVCSFM-------------TSIQADVVE 120
                                    R+                           + ADVVE
Sbjct: 1077 QFEPTQFFAPGRPCKVVCNTDVEVRLHQMDIHPDNRENCNLRCTRSHHWLHRKVIADVVE 1136

Query: 121  SLIAALYLDGGIEVAGTFVD 140
            SLI A  ++GG + A  F+ 
Sbjct: 1137 SLIGAFLVEGGFKAAFAFLH 1156



 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 10/78 (12%)

Query: 157  AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VVVEISG----LAPAQGMDC-SKR 209
            A++ L E   A +   PE+K+    GP H  +FT  VVVEI G    L          K+
Sbjct: 1544 ARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKGASATLLECHSDGKLQKK 1603

Query: 210  AAEQVAAAEV---LKREG 224
            AA++ AA      LK+ G
Sbjct: 1604 AAQEHAAQGALWCLKQLG 1621


>gi|73963946|ref|XP_868526.1| PREDICTED: similar to dicer1 isoform 4 [Canis familiaris]
          Length = 1900

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 59/252 (23%), Positives = 100/252 (39%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1644 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1703

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107
                G L+   ++LV+    + +A + D   + +                 +  +  + +
Sbjct: 1704 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1763

Query: 108  CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149
             S                +     D+ ESL  A+Y+D G+  E+         +    K 
Sbjct: 1764 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1823

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1824 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1876

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1877 IAKSAAARRALR 1888



 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 1294 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1351

Query: 79   VSAETCSQVARELDLASFIRVS 100
            VS     ++ ++  L S + VS
Sbjct: 1352 VSNCNLYRLGKKKGLPSRMVVS 1373


>gi|73963940|ref|XP_537547.2| PREDICTED: similar to dicer1 isoform 1 [Canis familiaris]
          Length = 1923

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 59/252 (23%), Positives = 100/252 (39%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1667 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1726

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107
                G L+   ++LV+    + +A + D   + +                 +  +  + +
Sbjct: 1727 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1786

Query: 108  CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149
             S                +     D+ ESL  A+Y+D G+  E+         +    K 
Sbjct: 1787 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1846

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1847 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1899

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1900 IAKSAAARRALR 1911



 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 1294 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1351

Query: 79   VSAETCSQVARELDLASFIRVS 100
            VS     ++ ++  L S + VS
Sbjct: 1352 VSNCNLYRLGKKKGLPSRMVVS 1373


>gi|73963944|ref|XP_868522.1| PREDICTED: similar to Endoribonuclease Dicer (Helicase with RNase
           motif) (Helicase-MOI) isoform 3 [Canis familiaris]
          Length = 821

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 59/252 (23%), Positives = 100/252 (39%), Gaps = 43/252 (17%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 565 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 624

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107
               G L+   ++LV+    + +A + D   + +                 +  +  + +
Sbjct: 625 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 684

Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149
            S                +     D+ ESL  A+Y+D G+  E+         +    K 
Sbjct: 685 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 744

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 745 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 797

Query: 210 AAEQVAAAEVLK 221
            A+  AA   L+
Sbjct: 798 IAKSAAARRALR 809



 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%)

Query: 19  NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 192 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 249

Query: 79  VSAETCSQVARELDLASFIRVS 100
           VS     ++ ++  L S + VS
Sbjct: 250 VSNCNLYRLGKKKGLPSRMVVS 271


>gi|308237838|ref|NP_001184123.1| endoribonuclease Dicer [Sus scrofa]
 gi|307715909|gb|ADN88174.1| dicer [Sus scrofa]
          Length = 1915

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 59/252 (23%), Positives = 101/252 (40%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E++I Y+F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1659 FENFERKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1718

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107
                G L+   ++LV+    + +A + D   + +                 +  +  + +
Sbjct: 1719 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1778

Query: 108  CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149
             S                +     D+ ESL  A+Y+D G+  EV         +    K 
Sbjct: 1779 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKF 1838

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1839 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1891

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1892 IAKSAAARRALR 1903



 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 6/91 (6%)

Query: 14   GYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
            GY+      N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG
Sbjct: 1282 GYSPRTPGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEG 1339

Query: 70   ELSVRFNSLVSAETCSQVARELDLASFIRVS 100
             LS   +  VS     ++ ++  L S + VS
Sbjct: 1340 RLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1370


>gi|218195189|gb|EEC77616.1| hypothetical protein OsI_16596 [Oryza sativa Indica Group]
          Length = 1576

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 92/244 (37%), Gaps = 24/244 (9%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            M     + LE+ IGY F ++ LL +A  H S S      Y+RLEFLGD +L  +I++ L+
Sbjct: 1128 MDYTDIAGLEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLY 1187

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR---------VSSDLRKDVCSFM 111
            + +   K G+++   +  V  ++ +  A E  +   +          +S        S  
Sbjct: 1188 STYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNS 1247

Query: 112  ----------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTE 160
                           D+VES I A+ LD G  +   + V     +  L       +   E
Sbjct: 1248 EKDLLEEPACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHTNPMRE 1307

Query: 161  LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEV 219
            L+E            K     G  H     V V I          + + +AA + AA E 
Sbjct: 1308 LRELCQCHGFELGLPKPMKADGEYHVK---VEVNIKSKIIICTAANRNSKAARKFAAQET 1364

Query: 220  LKRE 223
            L + 
Sbjct: 1365 LSKL 1368



 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 48/140 (34%), Gaps = 40/140 (28%)

Query: 41   ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
            ER E LGD  L  ++    F  ++   EG+L+ R + +V+     +++    L  +IR  
Sbjct: 962  ERFEVLGDAFLKYVVGRHKFITYEGLDEGQLTRRRSDVVNNSHLYELSIRKKLQVYIRDQ 1021

Query: 101  SDL----------------------------------------RKDVCSFMTSIQADVVE 120
                                                        +        + ADVVE
Sbjct: 1022 QFEPTQFFAPGRPCKVVCNTDVEVRLHQMDIHPDNRENCNLRCTRSHHWLHRKVIADVVE 1081

Query: 121  SLIAALYLDGGIEVAGTFVD 140
            SLI A  ++GG + A  F+ 
Sbjct: 1082 SLIGAFLVEGGFKAAFAFLH 1101



 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 10/78 (12%)

Query: 157  AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VVVEISG----LAPAQGMDC-SKR 209
            A++ L E   A +   PE+K+    GP H  +FT  VVVEI G    L          K+
Sbjct: 1489 ARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKGASATLLECHSDGKLQKK 1548

Query: 210  AAEQVAAAEV---LKREG 224
            AA++ AA      LK+ G
Sbjct: 1549 AAQEHAAQGALWCLKQLG 1566


>gi|328716579|ref|XP_001944314.2| PREDICTED: endoribonuclease Dcr-1-like isoform 1 [Acyrthosiphon
            pisum]
          Length = 1609

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 62/250 (24%), Positives = 104/250 (41%), Gaps = 43/250 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            + + E+ +GY F +RS L +A+TH+S   +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1357 FESFEQHLGYHFQDRSYLLQAMTHASYYPNRLTDCYQRLEFLGDAVLDYLITRHLYEDKR 1416

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSF------------- 110
                G L+   ++LV+    + +A       + + +S  L   VC F             
Sbjct: 1417 QHSPGALTDLRSALVNNTIFASLAVRNGFHKYFKHLSPGLSDVVCRFVTIQEENGHTIDE 1476

Query: 111  -----------------MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153
                             +     DV ES+  A+YLD  + +   +   Y K    +  +F
Sbjct: 1477 EFYFLGEDDCEEAEDVEVPKALGDVFESVAGAIYLDSNMSLDTVW-KVYHKIMENEMEQF 1535

Query: 154  RRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDH---DPRFTVVVEISGLAPAQGMDCSKR 209
             ++  K+ ++E       + PE      S P+      R  VVVEI G    +G+  + R
Sbjct: 1536 SKNVPKSPIRELL----ELEPE--TAKFSKPEKLADGRRVRVVVEIFGKGEFKGIGRNYR 1589

Query: 210  AAEQVAAAEV 219
             A+  AA   
Sbjct: 1590 IAKCTAAKCA 1599



 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 2/89 (2%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             S+L +ALT S+ +     + ERLE +GD  L   I+  L+   D+  EG+LS   +  V
Sbjct: 1124 PSVLLQALTMSNANDGI--NLERLETIGDSFLKYAITAYLYCTHDNVHEGKLSHLRSKQV 1181

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDVC 108
            S     ++ +       +  +     D  
Sbjct: 1182 SNLNLYRLGKLKMFGERMISTKFEPHDNW 1210


>gi|58382645|ref|XP_312076.2| AGAP002836-PA [Anopheles gambiae str. PEST]
 gi|55241936|gb|EAA07793.2| AGAP002836-PA [Anopheles gambiae str. PEST]
          Length = 2256

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 63/276 (22%), Positives = 104/276 (37%), Gaps = 68/276 (24%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S S +   + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1979 FEEFEQALGYRFRDRSYLLQAMTHASYSPNRLTDCYQRLEFLGDAILDYLITRHLYEDRR 2038

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASF-IRVSSDLRKDVCSF------------- 110
                G L+   ++LV+    + +A       + + +S  L++ +  F             
Sbjct: 2039 QHSPGALTDLRSALVNNTIFASLAVRHGFHKYFLHLSPGLQEVIDRFVRIQQENGHRITE 2098

Query: 111  ------------------------------------MTSIQADVVESLIAALYLDG--GI 132
                                                +     DV ES+  A++LD    +
Sbjct: 2099 EEYYLPDEDDELGEYGAMGEDGPGEGRGVGEAEDVEVPKALGDVFESIAGAIFLDSDMSL 2158

Query: 133  EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDP 187
            +       K       K        K+ ++E        AKFG  PE K+T         
Sbjct: 2159 DTVWKVYRKMMGPEIEKFSSSV--PKSPIRELLEMEPETAKFGK-PE-KLTDG------R 2208

Query: 188  RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            R  V VE+ G    +G+  + R A+  AA   L++ 
Sbjct: 2209 RVRVTVEVFGKGTFRGIGRNYRIAKCTAAKCALRQL 2244



 Score = 63.2 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 2/89 (2%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             +++ +ALT S+ +     + ERLE +GD  L   I+T L+  +D+  EG+LS   +  V
Sbjct: 1664 PAIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYCRYDNVHEGKLSHLRSKQV 1721

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDVC 108
            S     ++ R   L   +  +     D  
Sbjct: 1722 SNLNLYRLGRRKRLGDCMIAAKFEPHDNW 1750


>gi|29424049|gb|AAO73809.1| dicer-1 [Anopheles gambiae]
          Length = 2259

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 63/276 (22%), Positives = 104/276 (37%), Gaps = 68/276 (24%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S S +   + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1982 FEEFEQALGYRFRDRSYLLQAMTHASYSPNRLTDCYQRLEFLGDAILDYLITRHLYEDRR 2041

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASF-IRVSSDLRKDVCSF------------- 110
                G L+   ++LV+    + +A       + + +S  L++ +  F             
Sbjct: 2042 QHSPGALTDLRSALVNNTIFASLAVRHGFHKYFLHLSPGLQEVIDRFVRIQQENGHRITE 2101

Query: 111  ------------------------------------MTSIQADVVESLIAALYLDG--GI 132
                                                +     DV ES+  A++LD    +
Sbjct: 2102 EEYYLPDEDDELGEYGAMGEDGPGEGRGVGEAEDVEVPKALGDVFESIAGAIFLDSDMSL 2161

Query: 133  EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDP 187
            +       K       K        K+ ++E        AKFG  PE K+T         
Sbjct: 2162 DTVWKVYRKMMGPEIEKFSSSV--PKSPIRELLEMEPETAKFGK-PE-KLTDG------R 2211

Query: 188  RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            R  V VE+ G    +G+  + R A+  AA   L++ 
Sbjct: 2212 RVRVTVEVFGKGTFRGIGRNYRIAKCTAAKCALRQL 2247



 Score = 63.2 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 2/89 (2%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             +++ +ALT S+ +     + ERLE +GD  L   I+T L+  +D+  EG+LS   +  V
Sbjct: 1664 PAIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYCRYDNVHEGKLSHLRSKQV 1721

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDVC 108
            S     ++ R   L   +  +     D  
Sbjct: 1722 SNLNLYRLGRRKRLGDCMIAAKFEPHDNW 1750


>gi|195502701|ref|XP_002098342.1| GE24009 [Drosophila yakuba]
 gi|194184443|gb|EDW98054.1| GE24009 [Drosophila yakuba]
          Length = 2250

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 57/257 (22%), Positives = 97/257 (37%), Gaps = 49/257 (19%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1994 FDEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2053

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111
                G L+   ++LV+    + +A       F R +S  L   +  F+            
Sbjct: 2054 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHSISE 2113

Query: 112  ------------------TSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSG 151
                                   DV ES+  A++LD  +  +V              +  
Sbjct: 2114 EYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFS 2173

Query: 152  KFRRDAKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206
                  K+ ++E        AKFG             D   R  V V++      +G+  
Sbjct: 2174 NSV--PKSPIRELLELEPETAKFGKP-------EKLADG-RRVRVTVDVFCKGTFRGIGR 2223

Query: 207  SKRAAEQVAAAEVLKRE 223
            + R A+  AA   L++ 
Sbjct: 2224 NYRIAKCTAAKCALRQL 2240



 Score = 65.5 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 9/119 (7%)

Query: 11   KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
              +G+   + S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+
Sbjct: 1715 DLVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1772

Query: 71   LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125
            LS   +  V+     ++ R   L  ++  +     D     C ++     ++ ++LI A
Sbjct: 1773 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1828


>gi|193582606|ref|XP_001943370.1| PREDICTED: endoribonuclease Dcr-1-like [Acyrthosiphon pisum]
          Length = 1626

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 63/255 (24%), Positives = 104/255 (40%), Gaps = 45/255 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            + + E+ +GY F +RS L +A+TH+S   +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1374 FESFEQHLGYYFQDRSYLLQAMTHASYYPNCLTDCYQRLEFLGDAVLDYLITRHLYEDKR 1433

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111
                G L+   ++LV+    + +A +     +++ +S  L + V  F+            
Sbjct: 1434 RHPPGALTDLRSALVNNTIFASLAVKNGFHKYLKHLSPGLSEVVYRFVAIQEENGHTIDE 1493

Query: 112  ------------------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALK--S 150
                                +  D+ ES+  A+YLD  + +   + V     +  +K  S
Sbjct: 1494 EFCFSGEDDFEDAEDVEAPKVLGDIFESVAGAIYLDSNMSLDAVWKVYHKIMENEIKQFS 1553

Query: 151  GKFRRDAKTELQEWA--HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
                     EL E     AKF   PE  V          R  V+VEI G    +G+  + 
Sbjct: 1554 KNVPISPVRELLELEPNTAKFSK-PEKLVDG-------RRVRVIVEILGKGVFKGIGRNY 1605

Query: 209  RAAEQVAAAEVLKRE 223
            R A+  AA   L   
Sbjct: 1606 RIAKCTAAKCALNHL 1620



 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 58/157 (36%), Gaps = 28/157 (17%)

Query: 9    LEKRIGYAFA-NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             +  + Y    + S+L +ALT  + +       ERLE +GD  L   ++  L+   ++  
Sbjct: 1176 FQPDLNYHPGPSPSILLQALT--TANAIDGYDLERLETIGDSFLKYAVTAYLYCTHNNVH 1233

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL----------------RKDVCSFM 111
            EG LS   ++ VS     ++ +       +  +                    K V +  
Sbjct: 1234 EGILSDLRSNHVSNLNLYRLGKLKMFGERMISTKFEPRSNWLPPCYIGPHKLEKAVINSN 1293

Query: 112  TSI---------QADVVESLIAALYLDGGIEVAGTFV 139
             SI          AD VE+LI A  +  G   A  F+
Sbjct: 1294 ISITQHITNDKSIADCVEALIGAYLISCGTRGALLFM 1330


>gi|115459356|ref|NP_001053278.1| Os04g0509300 [Oryza sativa Japonica Group]
 gi|113564849|dbj|BAF15192.1| Os04g0509300 [Oryza sativa Japonica Group]
          Length = 1090

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 92/244 (37%), Gaps = 24/244 (9%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M     + LE+ IGY F ++ LL +A  H S S      Y+RLEFLGD +L  +I++ L+
Sbjct: 642 MDYTDIAGLEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLY 701

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR---------VSSDLRKDVCSFM 111
           + +   K G+++   +  V  ++ +  A E  +   +          +S        S  
Sbjct: 702 STYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNS 761

Query: 112 ----------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTE 160
                          D+VES I A+ LD G  +   + V     +  L       +   E
Sbjct: 762 EKDLLEEPACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHTNPMRE 821

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEV 219
           L+E            K     G  H     V V I          + + +AA + AA E 
Sbjct: 822 LRELCQCHGFELGLPKPMKADGEYHVK---VEVNIKSKIIICTAANRNSKAARKFAAQET 878

Query: 220 LKRE 223
           L + 
Sbjct: 879 LSKL 882



 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 48/140 (34%), Gaps = 40/140 (28%)

Query: 41  ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI--- 97
           ER E LGD  L  ++    F  ++   EG+L+ R + +V+     +++    L  +I   
Sbjct: 476 ERFEVLGDAFLKYVVGRHKFITYEGLDEGQLTRRRSDVVNNSHLYELSIRKKLQVYIRDQ 535

Query: 98  ------------------------RVSSDLRKDVCSFM-------------TSIQADVVE 120
                                   R+                           + ADVVE
Sbjct: 536 QFEPTQFFAPGRPCKVVCNTDVEVRLHQMDIHPDNRENCNLRCTRSHHWLHRKVIADVVE 595

Query: 121 SLIAALYLDGGIEVAGTFVD 140
           SLI A  ++GG + A  F+ 
Sbjct: 596 SLIGAFLVEGGFKAAFAFLH 615



 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 10/78 (12%)

Query: 157  AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VVVEISG----LAPAQGMDC-SKR 209
            A++ L E   A +   PE+K+    GP H  +FT  VVVEI G    L          K+
Sbjct: 1003 ARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKGASATLLECHSDGKLQKK 1062

Query: 210  AAEQVAAAEV---LKREG 224
            AA++ AA      LK+ G
Sbjct: 1063 AAQEHAAQGALWCLKQLG 1080


>gi|195572986|ref|XP_002104476.1| Dicer-1 [Drosophila simulans]
 gi|194200403|gb|EDX13979.1| Dicer-1 [Drosophila simulans]
          Length = 1533

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 57/257 (22%), Positives = 97/257 (37%), Gaps = 49/257 (19%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1277 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1336

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111
                G L+   ++LV+    + +A       F R +S  L   +  F+            
Sbjct: 1337 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHSISE 1396

Query: 112  ------------------TSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSG 151
                                   DV ES+  A++LD  +  +V              +  
Sbjct: 1397 EYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFS 1456

Query: 152  KFRRDAKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206
                  K+ ++E        AKFG             D   R  V V++      +G+  
Sbjct: 1457 NSV--PKSPIRELLELEPETAKFGKP-------EKLADG-RRVRVTVDVFCKGTFRGIGR 1506

Query: 207  SKRAAEQVAAAEVLKRE 223
            + R A+  AA   L++ 
Sbjct: 1507 NYRIAKCTAAKCALRQL 1523



 Score = 65.1 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 9/119 (7%)

Query: 11   KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
              +G+   + S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+
Sbjct: 998  DLVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1055

Query: 71   LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125
            LS   +  V+     ++ R   L  ++  +     D     C ++     ++ ++LI A
Sbjct: 1056 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1111


>gi|109478606|ref|XP_001068155.1| PREDICTED: dicer 1, ribonuclease type III [Rattus norvegicus]
 gi|109479876|ref|XP_001069041.1| PREDICTED: dicer 1, ribonuclease type III [Rattus norvegicus]
 gi|149025439|gb|EDL81806.1| rCG20888 [Rattus norvegicus]
          Length = 1918

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 60/252 (23%), Positives = 100/252 (39%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1662 FENFEKKINYIFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1721

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107
                G L+   ++LV+    + +A + D   + +                 +  +  + +
Sbjct: 1722 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1781

Query: 108  CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149
             S                +     D+ ESL  A+Y+D G+  EV         +    K 
Sbjct: 1782 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKF 1841

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1842 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1894

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1895 IAKSAAARRALR 1906



 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 1293 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1350

Query: 79   VSAETCSQVARELDLASFIRVS 100
            VS     ++ ++  L S + VS
Sbjct: 1351 VSNCNLYRLGKKQGLPSRMVVS 1372


>gi|195143531|ref|XP_002012751.1| GL23778 [Drosophila persimilis]
 gi|194101694|gb|EDW23737.1| GL23778 [Drosophila persimilis]
          Length = 2278

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 57/257 (22%), Positives = 96/257 (37%), Gaps = 49/257 (19%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E  +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 2022 FEEFEASLGYRFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2081

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111
                G L+   ++LV+    + +A       F R +S  L   +  F+            
Sbjct: 2082 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHSISE 2141

Query: 112  ------------------TSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSG 151
                                   DV ES+  A++LD  +  +V              +  
Sbjct: 2142 EYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFS 2201

Query: 152  KFRRDAKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206
                  K+ ++E        AKFG             D   R  V V++      +G+  
Sbjct: 2202 NSV--PKSPIRELLELEPETAKFGKP-------EKLADG-RRVRVTVDVFCKGTFRGIGR 2251

Query: 207  SKRAAEQVAAAEVLKRE 223
            + R A+  AA   L++ 
Sbjct: 2252 NYRIAKCTAAKCALRQL 2268



 Score = 65.1 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 9/119 (7%)

Query: 11   KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
            + +G+   + S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+
Sbjct: 1738 ELVGHPGPSPSVILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1795

Query: 71   LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125
            LS   +  V+     ++ R   L  ++  +     D     C ++     ++ ++LI A
Sbjct: 1796 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1851


>gi|296475171|gb|DAA17286.1| endoribonuclease Dicer [Bos taurus]
          Length = 1922

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 59/252 (23%), Positives = 99/252 (39%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1667 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1726

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107
                G L+   ++LV+    + +A + D   + +                 +  +  + +
Sbjct: 1727 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1786

Query: 108  CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149
             S                +     D+ ESL  A+Y+D G+  E          +    K 
Sbjct: 1787 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1846

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1847 SANVPRSPVRELLEMEPEITKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1899

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1900 IAKSAAARRALR 1911



 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 3/83 (3%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL-LFNHFDSAKEGELSVRFNS 77
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T+ L      A EG LS   + 
Sbjct: 1293 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTVSLSALILDAHEGRLSYMRSK 1350

Query: 78   LVSAETCSQVARELDLASFIRVS 100
             VS     ++ ++  L S + VS
Sbjct: 1351 KVSNCNLYRLGKKKGLPSRMVVS 1373


>gi|42733596|ref|NP_976235.1| endoribonuclease Dicer [Bos taurus]
 gi|257051053|sp|Q6TUI4|DICER_BOVIN RecName: Full=Endoribonuclease Dicer
 gi|38679195|gb|AAR26432.1| dicer [Bos taurus]
          Length = 1923

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 59/252 (23%), Positives = 99/252 (39%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1667 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1726

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107
                G L+   ++LV+    + +A + D   + +                 +  +  + +
Sbjct: 1727 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1786

Query: 108  CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149
             S                +     D+ ESL  A+Y+D G+  E          +    K 
Sbjct: 1787 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1846

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1847 SANVPRSPVRELLEMEPEITKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1899

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1900 IAKSAAARRALR 1911



 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 3/83 (3%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL-LFNHFDSAKEGELSVRFNS 77
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T+ L      A EG LS   + 
Sbjct: 1293 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTVSLSALILDAHEGRLSYMRSK 1350

Query: 78   LVSAETCSQVARELDLASFIRVS 100
             VS     ++ ++  L S + VS
Sbjct: 1351 KVSNCNLYRLGKKKGLPSRMVVS 1373


>gi|125773725|ref|XP_001358121.1| GA18437 [Drosophila pseudoobscura pseudoobscura]
 gi|54637856|gb|EAL27258.1| GA18437 [Drosophila pseudoobscura pseudoobscura]
          Length = 2280

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 57/257 (22%), Positives = 96/257 (37%), Gaps = 49/257 (19%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E  +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 2024 FEEFEASLGYRFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2083

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111
                G L+   ++LV+    + +A       F R +S  L   +  F+            
Sbjct: 2084 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHSISE 2143

Query: 112  ------------------TSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSG 151
                                   DV ES+  A++LD  +  +V              +  
Sbjct: 2144 EYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFS 2203

Query: 152  KFRRDAKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206
                  K+ ++E        AKFG             D   R  V V++      +G+  
Sbjct: 2204 NSV--PKSPIRELLELEPETAKFGKP-------EKLADG-RRVRVTVDVFCKGTFRGIGR 2253

Query: 207  SKRAAEQVAAAEVLKRE 223
            + R A+  AA   L++ 
Sbjct: 2254 NYRIAKCTAAKCALRQL 2270



 Score = 65.1 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 9/119 (7%)

Query: 11   KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
            + +G+   + S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+
Sbjct: 1740 ELVGHPGPSPSVILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1797

Query: 71   LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125
            LS   +  V+     ++ R   L  ++  +     D     C ++     ++ ++LI A
Sbjct: 1798 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1853


>gi|167538060|ref|XP_001750696.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163770830|gb|EDQ84509.1| predicted protein [Monosiga brevicollis MX1]
          Length = 603

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 67/224 (29%), Positives = 101/224 (45%), Gaps = 19/224 (8%)

Query: 15  YAFANRSLLEK----ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
           Y+ AN + + +    ALTH S + + Q S ERLEFLGDR+L L  +  L++ F    EG 
Sbjct: 289 YSAANITYVLERTRPALTHGSRASAEQPSNERLEFLGDRVLNLAAAEHLYHAFPKEGEGV 348

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           L+ + +++V+A+    +A+ L L   I+V   +        T +  D VE+L+ A+ LDG
Sbjct: 349 LTKKLSAMVNAQALHGMAKRLKLDQHIQVIEGVDLS---ERTRVLGDAVEALLGAILLDG 405

Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHA-KFGVTPEYKVTFRSGPDHDPRF 189
           G   A       W   ++     R + K  LQ  A   +    P Y        +    +
Sbjct: 406 GWPAALAVTHHLW---SISHTPTRTNFKEALQILAQKFEPHELPIYTPRGCDESESVRTW 462

Query: 190 TVVVEISG--------LAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            V VE +              G   S +AAEQ AA  VLK+  I
Sbjct: 463 HVRVEANLPSSWWGPIQLMGHGQGTSIKAAEQAAAISVLKQLNI 506


>gi|225462996|ref|XP_002264486.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296084589|emb|CBI25610.3| unnamed protein product [Vitis vinifera]
          Length = 1623

 Score =  159 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 107/245 (43%), Gaps = 29/245 (11%)

Query: 2    SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
            S+     LEK +G+ F ++ LL +A+ H S +      Y+RLEFLGD +L  LI++ L++
Sbjct: 1195 SSTDVPALEKLLGHEFLHKGLLLQAIVHPSYNKHGGGCYQRLEFLGDAVLDYLITSYLYS 1254

Query: 62   HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----VSSDLRK----------- 105
             +   K G+++   +  V+ ++ + VA    L  F+      +S  ++K           
Sbjct: 1255 VYPKLKPGQMTDLRSLSVNNKSFANVAVSRSLHEFLICDASSLSEAIKKYVDFIRTPTLD 1314

Query: 106  ---DVCSFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTEL 161
                          D+VES + A+ LD G ++   + +      R +     + +   EL
Sbjct: 1315 KDLHEGPKCPKALGDLVESCMGAILLDKGFDLNHAWNIMLSILDRIMSFSDLQLNPIREL 1374

Query: 162  QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP---AQGMDCSKRAAEQVAAAE 218
            QE          ++  + + G      F V  ++SG      A   + +++ A ++A+ +
Sbjct: 1375 QELCQHHNWDL-QFPTSKQGG-----TFLVEAKVSGDDICTTASATNANRKDARRIASNQ 1428

Query: 219  VLKRE 223
            + K+ 
Sbjct: 1429 LFKKL 1433



 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 54/137 (39%), Gaps = 37/137 (27%)

Query: 41   ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-- 98
            ERLE LGD  L   +   LF  +D+  EGEL+ R +++V+     ++A   +L  +IR  
Sbjct: 1031 ERLEVLGDAFLKFAVGRRLFLLYDALDEGELTRRRSNVVNNSNLFKLAVRRNLQVYIRDQ 1090

Query: 99   ---------VSS------------------------DLRKDVCSFM--TSIQADVVESLI 123
                     +                          ++R   C         ADVVE+L+
Sbjct: 1091 SFDPGQFFALGHRCPRICEKETEMAIHSRCGKTPTTEVRCSKCHHWLHKKTIADVVEALV 1150

Query: 124  AALYLDGGIEVAGTFVD 140
             A  +D G + A  F+ 
Sbjct: 1151 GAFIVDSGFKAATVFLK 1167



 Score = 38.1 bits (88), Expect = 0.96,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 158  KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203
            K  + E   A +   P ++     GP H   FTV + +  +    G
Sbjct: 1540 KARMYEICAANYWKPPSFECCKEEGPSHLKLFTVKLTMK-IEDGSG 1584


>gi|87240866|gb|ABD32724.1| Helicase, C-terminal; Argonaute and Dicer protein, PAZ; Ribonuclease
            III, bacterial [Medicago truncatula]
          Length = 1939

 Score =  159 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 56/237 (23%), Positives = 99/237 (41%), Gaps = 30/237 (12%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            + ++ +  LE  +   F ++ LL +++TH+S   S    Y+RLEF+GD +L  LI+  LF
Sbjct: 1596 LRSVDFDALEGALNIKFKDKGLLIESITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 1655

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-LRKDVCSFM-------- 111
              +     G L+    + V+ E  ++V  + +L   +R  S  L K +  F+        
Sbjct: 1656 FSYTDLPPGRLTDLRAAAVNNENFARVTVKHNLHLHLRHGSSALEKQIKDFVKEVQDELS 1715

Query: 112  --------------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRD 156
                            +  D++ES+  A++LD G   A  + V +      +        
Sbjct: 1716 KPGFNSFGLGDCKAPKVLGDILESIAGAIFLDSGRNTAVVWKVFQPLLHPMVTPETLPMH 1775

Query: 157  AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
               ELQE    +     EY+   R+G       TV V I G+      +  K+ A++
Sbjct: 1776 PVRELQERCQQQAEGL-EYRA-SRAGN----LATVEVFIDGVQVGAAQNPQKKMAQK 1826



 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 2/74 (2%)

Query: 25   KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
            +ALT +S   ++   YER E LGD  L  ++S  LF       EG+L+     +VS    
Sbjct: 1401 EALTAASCQETF--CYERAELLGDAYLKWVVSRFLFLKHPQKHEGQLTRMRQQMVSNMVL 1458

Query: 85   SQVARELDLASFIR 98
             + A    L S+I 
Sbjct: 1459 YRYALSKGLQSYIL 1472



 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 8/68 (11%)

Query: 161  LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-------GLAPAQGMDCSKRAAEQ 213
            L +    +    P Y+     GP H  RFT  V ++            + M  S + A+ 
Sbjct: 1865 LNDICLRRNWPMPFYRCVSEGGPAHAKRFTFAVRVNTTDKGWTDECVGEAM-PSVKKAKD 1923

Query: 214  VAAAEVLK 221
             AA  +L+
Sbjct: 1924 SAAVLLLE 1931


>gi|126290301|ref|XP_001367933.1| PREDICTED: similar to Dicer protein [Monodelphis domestica]
          Length = 1923

 Score =  159 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 59/252 (23%), Positives = 100/252 (39%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1667 FENFEKKINYNFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1726

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107
                G L+   ++LV+    + +A + D   + +                 +  +  + +
Sbjct: 1727 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1786

Query: 108  CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149
             S                +     D+ ESL  A+Y+D G+  E+         +    K 
Sbjct: 1787 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1846

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1847 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1899

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1900 IAKSAAARRALR 1911



 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 1296 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1353

Query: 79   VSAETCSQVARELDLASFIRVS 100
            VS     ++ ++  L S + VS
Sbjct: 1354 VSNCNLYRLGKKKGLPSRMVVS 1375


>gi|326920976|ref|XP_003206741.1| PREDICTED: endoribonuclease Dicer-like [Meleagris gallopavo]
          Length = 1921

 Score =  159 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 59/252 (23%), Positives = 101/252 (40%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y+F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1665 FENFEKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1724

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107
                G L+   ++LV+    + +A + D   + +                 +  +  + +
Sbjct: 1725 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGM 1784

Query: 108  CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149
             S                +     D+ ESL  A+Y+D G+  E+         +    K 
Sbjct: 1785 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1844

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1845 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1897

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1898 IAKSAAARRALR 1909



 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 1294 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1351

Query: 79   VSAETCSQVARELDLASFIRVS 100
            VS     ++ ++  L S + VS
Sbjct: 1352 VSNCNLYRLGKKKGLPSRMVVS 1373


>gi|254281274|ref|NP_001156875.1| endoribonuclease Dicer [Taeniopygia guttata]
          Length = 1921

 Score =  159 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 59/252 (23%), Positives = 101/252 (40%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y+F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1665 FENFEKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1724

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107
                G L+   ++LV+    + +A + D   + +                 +  +  + +
Sbjct: 1725 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGM 1784

Query: 108  CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149
             S                +     D+ ESL  A+Y+D G+  E+         +    K 
Sbjct: 1785 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1844

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1845 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1897

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1898 IAKSAAARRALR 1909



 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 1294 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1351

Query: 79   VSAETCSQVARELDLASFIRVS 100
            VS     ++ ++  L S + VS
Sbjct: 1352 VSNCNLYRLGKKKGLPSRMVVS 1373


>gi|215694849|dbj|BAG90040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 1058

 Score =  159 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 92/244 (37%), Gaps = 24/244 (9%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M     + LE+ IGY F ++ LL +A  H S S      Y+RLEFLGD +L  +I++ L+
Sbjct: 610 MDYTDIAGLEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLY 669

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR---------VSSDLRKDVCSFM 111
           + +   K G+++   +  V  ++ +  A E  +   +          +S        S  
Sbjct: 670 STYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNS 729

Query: 112 ----------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTE 160
                          D+VES I A+ LD G  +   + V     +  L       +   E
Sbjct: 730 EKDLLEEPACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHTNPMRE 789

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQVAAAEV 219
           L+E            K     G  H     V V I          + + +AA + AA E 
Sbjct: 790 LRELCQCHGFELGLPKPMKADGEYHVK---VEVNIKSKIIICTAANRNSKAARKFAAQET 846

Query: 220 LKRE 223
           L + 
Sbjct: 847 LSKL 850



 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 48/140 (34%), Gaps = 40/140 (28%)

Query: 41  ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
           ER E LGD  L  ++    F  ++   EG+L+ R + +V+     +++    L  +IR  
Sbjct: 444 ERFEVLGDAFLKYVVGRHKFITYEGLDEGQLTRRRSDVVNNSHLYELSIRKKLQVYIRDQ 503

Query: 101 SDL----------------------------------------RKDVCSFMTSIQADVVE 120
                                                       +        + ADVVE
Sbjct: 504 QFEPTQFFAPGRPCKVVCNTDVEVRLHQMDIHPDNRENCNLRCTRSHHWLHRKVIADVVE 563

Query: 121 SLIAALYLDGGIEVAGTFVD 140
           SLI A  ++GG + A  F+ 
Sbjct: 564 SLIGAFLVEGGFKAAFAFLH 583



 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 10/78 (12%)

Query: 157  AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VVVEISG----LAPAQGMDC-SKR 209
            A++ L E   A +   PE+K+    GP H  +FT  VVVEI G    L          K+
Sbjct: 971  ARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKGASATLLECHSDGKLQKK 1030

Query: 210  AAEQVAAAEV---LKREG 224
            AA++ AA      LK+ G
Sbjct: 1031 AAQEHAAQGALWCLKQLG 1048


>gi|94957752|ref|NP_001035555.1| endoribonuclease Dicer [Gallus gallus]
 gi|257051054|sp|Q25BN1|DICER_CHICK RecName: Full=Endoribonuclease Dicer
 gi|90074858|dbj|BAE87103.1| Dicer protein [Gallus gallus]
          Length = 1921

 Score =  159 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 59/252 (23%), Positives = 101/252 (40%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y+F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1665 FENFEKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1724

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107
                G L+   ++LV+    + +A + D   + +                 +  +  + +
Sbjct: 1725 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGM 1784

Query: 108  CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149
             S                +     D+ ESL  A+Y+D G+  E+         +    K 
Sbjct: 1785 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1844

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1845 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1897

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1898 IAKSAAARRALR 1909



 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 1294 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1351

Query: 79   VSAETCSQVARELDLASFIRVS 100
            VS     ++ ++  L S + VS
Sbjct: 1352 VSNCNLYRLGKKKGLPSRMVVS 1373


>gi|100271838|gb|ABF69324.1| ribonuclease III [Ehrlichia ruminantium]
 gi|100271841|gb|ABF69326.1| ribonuclease III [Ehrlichia ruminantium]
          Length = 137

 Score =  159 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 49/131 (37%), Positives = 73/131 (55%)

Query: 92  DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151
           +L  FI +S   R    +  ++   + +E+LI A+YLDGG++ A  F+  +WK  A    
Sbjct: 1   NLGIFIIMSDGERSCGGANNSNNLENALEALIGAIYLDGGLKAAKDFIFLFWKNSATHMK 60

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
              +DAKT LQEWA +K    P Y +  +SGPDH+P FTV V I+          +K+ A
Sbjct: 61  VPPQDAKTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVGINSHETLHATGHNKKLA 120

Query: 212 EQVAAAEVLKR 222
           EQ AA+ +L +
Sbjct: 121 EQKAASLMLAK 131


>gi|309355088|emb|CAP39460.2| CBR-DCR-1 protein [Caenorhabditis briggsae AF16]
          Length = 2030

 Score =  159 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 62/260 (23%), Positives = 104/260 (40%), Gaps = 50/260 (19%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
             +++ LE++IGY F +R+ L +A TH+S  ++     Y+RLEFLGD +L  +I+  LF  
Sbjct: 1760 FQFAQLEEKIGYRFKDRAYLVQAFTHASYINNRVTGCYQRLEFLGDAVLDYMITRYLFED 1819

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLAS-FIRVSSDLRKDVCSFM---------- 111
                  G L+   ++LV+    + +A + +    FI +   L   +  F+          
Sbjct: 1820 VRQYSPGVLTDLRSALVNNTIFASLAVKFEFQKHFIAMCPGLHHMIEKFVKLCGDRSFDT 1879

Query: 112  -------------------------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQ 145
                                          DV ES+  A+YLD G  +  T+ V  +  +
Sbjct: 1880 NFNTEMYMVTTEEEIDEGHEEDVEVPKALGDVFESVAGAIYLDSGRNLDTTWQVIYHLMK 1939

Query: 146  RALKS--GKFRRDAKTELQEW--AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201
              +++      R    EL E     A+F      +    SG     +  V V++      
Sbjct: 1940 GTIETCCANPPRSPIRELMELEGTKARFSKM---ERILESG-----KVRVTVDVGNNMRF 1991

Query: 202  QGMDCSKRAAEQVAAAEVLK 221
             GM  + R A+  AA   LK
Sbjct: 1992 TGMGRNYRIAKATAAKRALK 2011



 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 22   LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
            LL  ALT S+ S     S ER E +GD  L    +  L++      EG+LS   +  VS 
Sbjct: 1515 LLLTALTTSNASDGM--SLERFETIGDSFLKFATTDYLYHTLQEQHEGKLSWARSKEVSN 1572

Query: 82   ETCSQVARELDLASFI 97
                ++ ++L +   I
Sbjct: 1573 CNLYRLGKKLGIPQLI 1588


>gi|240247227|emb|CAX68236.1| dicer-1 [Blattella germanica]
          Length = 2271

 Score =  159 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 63/252 (25%), Positives = 103/252 (40%), Gaps = 47/252 (18%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y   E+RI Y F +RS L ++LTH+S S +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 2015 YDVFERRIRYKFRDRSYLLQSLTHASYSPNRLTDCYQRLEFLGDAVLDYLITRHLYEDSR 2074

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111
                G L+   ++LV+    + +A       + R +S  L + V  F+            
Sbjct: 2075 QHSPGALTDLRSALVNNTIFASLAVRYGFHKYFRHLSPGLNEVVDRFVRIQEENGHTISE 2134

Query: 112  ------------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153
                                   DV ES+  A++LD G+ +   +   Y++    +  +F
Sbjct: 2135 EYYLIEEEECEEAEDVEVPKALGDVFESVAGAIFLDSGMSLDAVW-RVYYRMMKSEIEQF 2193

Query: 154  RRD-AKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +  K+ ++E        AKFG             D   R  V VE+ G    +G+  +
Sbjct: 2194 STNVPKSPIRELLELEPETAKFGKP-------EKLADG-RRVRVTVEVFGKGTFKGIGRN 2245

Query: 208  KRAAEQVAAAEV 219
             R A+  AA   
Sbjct: 2246 YRIAKCTAAKCA 2257



 Score = 58.9 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 2/95 (2%)

Query: 14   GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
            G+   + S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +D+  EG+LS 
Sbjct: 1720 GHPGPSPSVILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYCTYDNIHEGKLSH 1777

Query: 74   RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108
              +  VS     ++ R       +  +     D  
Sbjct: 1778 LRSKQVSNLNLYRLGRRKVFGESMIATKFEPHDNW 1812


>gi|194910778|ref|XP_001982226.1| GG12488 [Drosophila erecta]
 gi|190656864|gb|EDV54096.1| GG12488 [Drosophila erecta]
          Length = 2249

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 57/257 (22%), Positives = 97/257 (37%), Gaps = 49/257 (19%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1993 FEVFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2052

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111
                G L+   ++LV+    + +A       F R +S  L   +  F+            
Sbjct: 2053 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHSISE 2112

Query: 112  ------------------TSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSG 151
                                   DV ES+  A++LD  +  +V              +  
Sbjct: 2113 EYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFS 2172

Query: 152  KFRRDAKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206
                  K+ ++E        AKFG             D   R  V V++      +G+  
Sbjct: 2173 NSV--PKSPIRELLELEPETAKFGKP-------EKLADG-RRVRVTVDVFCKGTFRGIGR 2222

Query: 207  SKRAAEQVAAAEVLKRE 223
            + R A+  AA   L++ 
Sbjct: 2223 NYRIAKCTAAKCALRQL 2239



 Score = 65.1 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 9/119 (7%)

Query: 11   KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
              +G+   + S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+
Sbjct: 1714 DLVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1771

Query: 71   LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125
            LS   +  V+     ++ R   L  ++  +     D     C ++     ++ ++LI A
Sbjct: 1772 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1827


>gi|194744012|ref|XP_001954492.1| GF18290 [Drosophila ananassae]
 gi|190627529|gb|EDV43053.1| GF18290 [Drosophila ananassae]
          Length = 2252

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 57/257 (22%), Positives = 96/257 (37%), Gaps = 49/257 (19%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E  +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1996 FEEFEASLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2055

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111
                G L+   ++LV+    + +A       F R +S  L   +  F+            
Sbjct: 2056 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHSISE 2115

Query: 112  ------------------TSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSG 151
                                   DV ES+  A++LD  +  +V              +  
Sbjct: 2116 EYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWQVYSNMMSPEIEQFS 2175

Query: 152  KFRRDAKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206
                  K+ ++E        AKFG             D   R  V V++      +G+  
Sbjct: 2176 NSV--PKSPIRELLELEPETAKFGKP-------EKLADG-RRVRVTVDVFCKGTFRGIGR 2225

Query: 207  SKRAAEQVAAAEVLKRE 223
            + R A+  AA   L++ 
Sbjct: 2226 NYRIAKCTAAKCALRQL 2242



 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 57/118 (48%), Gaps = 9/118 (7%)

Query: 12   RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71
             +G+   + S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+L
Sbjct: 1719 LVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGKL 1776

Query: 72   SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125
            S   +  V+     ++ R   L  ++  +     D     C ++     ++ ++LI A
Sbjct: 1777 SHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1831


>gi|327259080|ref|XP_003214366.1| PREDICTED: endoribonuclease Dicer-like isoform 2 [Anolis
            carolinensis]
          Length = 1915

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 60/252 (23%), Positives = 102/252 (40%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y+F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1659 FENFEKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1718

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107
                G L+   ++LV+    + +A + D   + +                 +  +  + +
Sbjct: 1719 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGM 1778

Query: 108  CSF---------------MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149
             S                +     D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 1779 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWHVYYPMMRPLIEKF 1838

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1839 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1891

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1892 IAKSAAARRALR 1903



 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 1288 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1345

Query: 79   VSAETCSQVARELDLASFIRVS 100
            VS     ++ ++  L S + VS
Sbjct: 1346 VSNCNLYRLGKKKGLPSRMVVS 1367


>gi|327259078|ref|XP_003214365.1| PREDICTED: endoribonuclease Dicer-like isoform 1 [Anolis
            carolinensis]
          Length = 1918

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 60/252 (23%), Positives = 102/252 (40%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y+F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1662 FENFEKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1721

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107
                G L+   ++LV+    + +A + D   + +                 +  +  + +
Sbjct: 1722 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGM 1781

Query: 108  CSF---------------MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK--- 149
             S                +     D+ ESL  A+Y+D G+ +   +   Y   R L    
Sbjct: 1782 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWHVYYPMMRPLIEKF 1841

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1842 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1894

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1895 IAKSAAARRALR 1906



 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 1291 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1348

Query: 79   VSAETCSQVARELDLASFIRVS 100
            VS     ++ ++  L S + VS
Sbjct: 1349 VSNCNLYRLGKKKGLPSRMVVS 1370


>gi|6715634|gb|AAF26461.1|AC007323_2 T25K16.4 [Arabidopsis thaliana]
          Length = 2024

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 63/264 (23%), Positives = 101/264 (38%), Gaps = 57/264 (21%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            + ++ +  LE+ + Y F  + LL +A+TH+S   S    Y+RLEF+GD +L  LI+  LF
Sbjct: 1642 LKSIDFVGLERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLF 1701

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-LRKDVCSFM-------- 111
              + S   G L+    + V+ E  ++VA +  L  ++R  S  L K V            
Sbjct: 1702 FTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQVNKIKKQSILFSK 1761

Query: 112  -----------------------------------------TSIQADVVESLIAALYLDG 130
                                                       +  D+VES+  A++LD 
Sbjct: 1762 SFKCLTVWLLFVFQIREFVKEVQTESSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDS 1821

Query: 131  GIEVAGTF-VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
            G +    + V +   Q  +           ELQE    +     EYK   RSG       
Sbjct: 1822 GKDTTAAWKVFQPLLQPMVTPETLPMHPVRELQERCQQQAEGL-EYKA-SRSGN----TA 1875

Query: 190  TVVVEISGLAPAQGMDCSKRAAEQ 213
            TV V I G+      +  K+ A++
Sbjct: 1876 TVEVFIDGVQVGVAQNPQKKMAQK 1899



 Score = 71.6 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 3/91 (3%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             L+  I Y      +L +ALT +S   ++   YER E LGD  L  ++S  LF  +    
Sbjct: 1433 QLKNLISYPIPTSKIL-EALTAASCQETF--CYERAELLGDAYLKWVVSRFLFLKYPQKH 1489

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIR 98
            EG+L+     +VS     Q A    L S+I+
Sbjct: 1490 EGQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 1520



 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 6/67 (8%)

Query: 161  LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGMD---CSKRAAEQV 214
            L +    K    P Y+     GP H  RFT  V ++        + +     S + A+  
Sbjct: 1951 LNDICLRKNWPMPSYRCVKEGGPAHAKRFTFGVRVNTSDRGWTDECIGEPMPSVKKAKDS 2010

Query: 215  AAAEVLK 221
            AA  +L+
Sbjct: 2011 AAVLLLE 2017


>gi|15150411|gb|AAK84929.1| SD01621p [Drosophila melanogaster]
          Length = 865

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 57/257 (22%), Positives = 97/257 (37%), Gaps = 49/257 (19%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 609 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 668

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111
               G L+   ++LV+    + +A       F R +S  L   +  F+            
Sbjct: 669 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHCISE 728

Query: 112 ------------------TSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSG 151
                                  DV ES+  A++LD  +  +V              +  
Sbjct: 729 EYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFS 788

Query: 152 KFRRDAKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206
                 K+ ++E        AKFG             D   R  V V++      +G+  
Sbjct: 789 NSV--PKSPIRELLELEPETAKFGKP-------EKLADG-RRVRVTVDVFCKGTFRGIGR 838

Query: 207 SKRAAEQVAAAEVLKRE 223
           + R A+  AA   L++ 
Sbjct: 839 NYRIAKCTAAKCALRQL 855



 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 9/119 (7%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
             +G+   + S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+
Sbjct: 330 DLVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 387

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125
           LS   +  V+     ++ R   L  ++  +     D     C ++     ++ ++LI A
Sbjct: 388 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 443


>gi|212723814|ref|NP_001131630.1| hypothetical protein LOC100192986 [Zea mays]
 gi|194692090|gb|ACF80129.1| unknown [Zea mays]
          Length = 365

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 58/242 (23%), Positives = 95/242 (39%), Gaps = 28/242 (11%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNH 62
           +   +LE  + Y+F + SLL +ALTH S         Y+RLEFLGD +L  + +   ++ 
Sbjct: 110 INVKSLELLLDYSFNDPSLLMEALTHGSYQIAGTTPCYQRLEFLGDAVLDHIFTDYFYHQ 169

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK--------------DVC 108
           +       L+   ++ V+    +  A +  L   +  SS                     
Sbjct: 170 YPECTPELLTDLRSASVNNSCYAHAAVKAGLHKHVLHSSSALHKRMADYLDKFEQSFSGP 229

Query: 109 SFM-------TSIQADVVESLIAALYLDGGIEVAGTFV-DKYWKQRALKSGKFRRDAKTE 160
           S           +  DVVES+  A+Y+D   +    +   K   +  +     + D   E
Sbjct: 230 SHGWEAGISLPKVLGDVVESIAGAIYIDAKHDKGVVWRSMKRILEPLVTPDTLQNDPVKE 289

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEV 219
           LQE+  +K     EY VT  +G          V   G    A     SK  A+++AA+ V
Sbjct: 290 LQEFCDSKGYTL-EYTVTRDNGVS---SVVAEVRTEGTTYKATRTGFSKLDAKKLAASSV 345

Query: 220 LK 221
           L+
Sbjct: 346 LR 347


>gi|148829108|gb|ABR14013.1| Dicer-1 [Penaeus monodon]
          Length = 2473

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 66/255 (25%), Positives = 104/255 (40%), Gaps = 46/255 (18%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y   E++IGY F +RS L +A TH+S   +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 2217 YQVFEEKIGYTFRDRSYLLQAFTHASYYKNRLTDCYQRLEFLGDAVLDYLITRHLYEDKR 2276

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFM------------ 111
                G L+   ++LV+    + +A + D   + R  S  L + +  F+            
Sbjct: 2277 QHSPGALTDLRSALVNNTIFASLAVKYDYHKYFRHFSPGLDRVIRDFVKMQEENGHKINE 2336

Query: 112  ------------------TSIQADVVESLIAALYLDGG--IEVAGTFVDKYWKQRALK-S 150
                                   DV ES+  A++LD G  ++   +       +   + S
Sbjct: 2337 EYYFMEEDECEAAEDIEVPKALGDVFESVAGAIFLDSGSSLDAVWSVYYTMMCREIEQFS 2396

Query: 151  GKFRRDAKTELQEWA--HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
            G   +    EL E     AKFG  PE ++        D +  V VEI G     G+  + 
Sbjct: 2397 GVVPKSPIRELLEMEPETAKFGK-PE-RLV-------DGKVRVSVEIFGKGSFSGVGRNY 2447

Query: 209  RAAEQVAAAEVLKRE 223
            R A+  AA   L+  
Sbjct: 2448 RIAKSTAAKRALRHL 2462



 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 60/149 (40%), Gaps = 14/149 (9%)

Query: 11   KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
              + +   + S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +    EG+
Sbjct: 1953 DLLNHPGPSPSVILQALTMSNANDGV--NLERLETIGDSFLKYAITTFLYCTYPQRHEGK 2010

Query: 71   LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAAL 126
            LS   +  VS     ++ +   L   +  +     D       F+     ++ E+LI   
Sbjct: 2011 LSYLRSKQVSNLNLYRLGKRKGLGECMVATKFEPHDNWLPPGYFVPR---ELEEALI--- 2064

Query: 127  YLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
              D G+      +        L S + RR
Sbjct: 2065 --DSGVPAGHWNMADLPGLHDLASDEIRR 2091


>gi|149636857|ref|XP_001510982.1| PREDICTED: similar to Dicer protein [Ornithorhynchus anatinus]
          Length = 1921

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 100/252 (39%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E++I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1665 FENFERKINYNFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1724

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107
                G L+   ++LV+    + +A + D   + +                 +  +  + +
Sbjct: 1725 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1784

Query: 108  CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149
             S                +     D+ ESL  A+Y+D G+  E+         +    K 
Sbjct: 1785 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1844

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1845 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1897

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1898 IAKSAAARRALR 1909



 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 1294 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1351

Query: 79   VSAETCSQVARELDLASFIRVS 100
            VS     ++ ++  L S + VS
Sbjct: 1352 VSNCNLYRLGKKKGLPSRMVVS 1373


>gi|283827860|gb|ADB44075.1| dicer-1 [Marsupenaeus japonicus]
          Length = 2482

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 66/255 (25%), Positives = 104/255 (40%), Gaps = 46/255 (18%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y   E++IGY F +RS L +A TH+S   +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 2226 YQVFEEKIGYTFQDRSYLLQAFTHASYYKNRLTDCYQRLEFLGDAVLDYLITRHLYEDKR 2285

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFM------------ 111
                G L+   ++LV+    + +A + D   + R  S  L + +  F+            
Sbjct: 2286 QHSPGALTDLRSALVNNTIFASLAVKYDYHKYFRHFSPGLDRVIRDFVKMQEENGHKINE 2345

Query: 112  ------------------TSIQADVVESLIAALYLDGG--IEVAGTFVDKYWKQRALK-S 150
                                   DV ES+  A++LD G  ++   +       +   + S
Sbjct: 2346 EYYFMEEDECEAAEDIEVPKALGDVFESVAGAIFLDSGSSLDAVWSVYYTMMCREIEQFS 2405

Query: 151  GKFRRDAKTELQEWA--HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
            G   +    EL E     AKFG  PE ++        D +  V VEI G     G+  + 
Sbjct: 2406 GVVPKSPIRELLEMEPETAKFGK-PE-RLV-------DGKVRVSVEIFGKGSFSGVGRNY 2456

Query: 209  RAAEQVAAAEVLKRE 223
            R A+  AA   L+  
Sbjct: 2457 RIAKSTAAKRALRHL 2471



 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 60/149 (40%), Gaps = 14/149 (9%)

Query: 11   KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
              + +   + S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +    EG+
Sbjct: 1962 DLLNHPGPSPSVILQALTMSNANDGV--NLERLETIGDSFLKYAITTFLYCTYPQRHEGK 2019

Query: 71   LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAAL 126
            LS   +  VS     ++ +   L   +  +     D       F+     ++ E+LI   
Sbjct: 2020 LSYLRSKQVSNLNLYRLGKRKGLGECMVATKFEPHDNWLPPGYFVPR---ELEEALI--- 2073

Query: 127  YLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
              D G+      +        L S + RR
Sbjct: 2074 --DSGVPAGHWNMADLPGLHDLASDEIRR 2100


>gi|268576156|ref|XP_002643058.1| C. briggsae CBR-DCR-1 protein [Caenorhabditis briggsae]
          Length = 1863

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 62/260 (23%), Positives = 104/260 (40%), Gaps = 50/260 (19%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
             +++ LE++IGY F +R+ L +A TH+S  ++     Y+RLEFLGD +L  +I+  LF  
Sbjct: 1595 FQFAQLEEKIGYRFKDRAYLVQAFTHASYINNRVTGCYQRLEFLGDAVLDYMITRYLFED 1654

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLAS-FIRVSSDLRKDVCSFM---------- 111
                  G L+   ++LV+    + +A + +    FI +   L   +  F+          
Sbjct: 1655 VRQYSPGVLTDLRSALVNNTIFASLAVKFEFQKHFIAMCPGLHHMIEKFVKLCGDRSFDT 1714

Query: 112  -------------------------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQ 145
                                          DV ES+  A+YLD G  +  T+ V  +  +
Sbjct: 1715 NFNTEMYMVTTEEEIDEGHEEDVEVPKALGDVFESVAGAIYLDSGRNLDTTWQVIYHLMK 1774

Query: 146  RALKS--GKFRRDAKTELQEW--AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201
              +++      R    EL E     A+F      +    SG     +  V V++      
Sbjct: 1775 GTIETCCANPPRSPIRELMELEGTKARFSKM---ERILESG-----KVRVTVDVGNNMRF 1826

Query: 202  QGMDCSKRAAEQVAAAEVLK 221
             GM  + R A+  AA   LK
Sbjct: 1827 TGMGRNYRIAKATAAKRALK 1846



 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 22   LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
            LL  ALT S+ S     S ER E +GD  L    +  L++      EG+LS   +  VS 
Sbjct: 1350 LLLTALTTSNASDGM--SLERFETIGDSFLKFATTDYLYHTLQEQHEGKLSWARSKEVSN 1407

Query: 82   ETCSQVARELDLASFI 97
                ++ ++L +   I
Sbjct: 1408 CNLYRLGKKLGIPQLI 1423


>gi|325954697|ref|YP_004238357.1| ribonuclease 3 [Weeksella virosa DSM 16922]
 gi|323437315|gb|ADX67779.1| Ribonuclease 3 [Weeksella virosa DSM 16922]
          Length = 256

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 102/224 (45%), Gaps = 16/224 (7%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFNHFDSA 66
           + +G    +  + E+A TH S      +    ++ERLEFLGD +LG   +  L+N     
Sbjct: 29  QLVGVKPKDIRVYEEAFTHRSAQRKDDKGQNVNFERLEFLGDALLGASAAVHLYNSAPDR 88

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +EG L+   + +VS    ++V+R+L L  F+  +++L          +  D++E+ + A+
Sbjct: 89  QEGYLTKMRSKIVSRRQLNEVSRKLHLTEFLIPANNLANLG----EDVNGDLLEAFVGAI 144

Query: 127 YLDGGIEVAGTFVDKYWKQRAL----KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           Y+D G+ +   F+ +Y     +    K  +     K+ + EW+         +       
Sbjct: 145 YVDQGLLITEKFITRYVIAPYITDLEKLEQRIASHKSLILEWSQKTKNSL-RFNTFEEQN 203

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKRE 223
            +    F  VV ++    ++G   SK+ AE+ AA      L+++
Sbjct: 204 AEDIQVFVSVVRLNEKVISKGRGTSKKKAEENAAKRAYYSLQKK 247


>gi|241061228|ref|XP_002408100.1| dicer-1, putative [Ixodes scapularis]
 gi|215492369|gb|EEC02010.1| dicer-1, putative [Ixodes scapularis]
          Length = 2050

 Score =  158 bits (401), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 55/256 (21%), Positives = 95/256 (37%), Gaps = 48/256 (18%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y   E RIGY F +R+ L +A TH+S   +   + Y+RLEFLGD +L  LI+  L++   
Sbjct: 1794 YDAFEARIGYRFRDRAYLLQAFTHASYHYNRLTDCYQRLEFLGDAVLDYLITRHLYDDPQ 1853

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111
                G L+   ++LV+    + +A + D   + + VS  L   +  F+            
Sbjct: 1854 RHSPGTLTDLRSALVNNTFFASLAVKYDFHRYFKNVSPGLFAVIQRFVETKCHSDGFRYH 1913

Query: 112  ------------------TSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSG 151
                                   D+ ES+  A++LD  +  +          K       
Sbjct: 1914 EKYYLEEEECEEAEEVEVPKALGDIFESVAGAIFLDSNMSLDTVWRVYYAMMKPEIEYFS 1973

Query: 152  KFRRDAKTELQEWA----HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
                  K+ ++E              E  +        + +  + VE+ G     G+  +
Sbjct: 1974 THV--PKSPIRELLELEPQTAKFERAEMTL--------NGKVRIRVEVFGKGRFVGVGRN 2023

Query: 208  KRAAEQVAAAEVLKRE 223
            KR A+  AA   L+  
Sbjct: 2024 KRIAKCTAAKRALRAL 2039



 Score = 59.7 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 2/89 (2%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             S+L +ALT S+ +     + ERLE +GD  L   ++  L+    S  EG+LS   +  +
Sbjct: 1550 PSILLQALTMSNANDGI--NLERLETVGDSFLKYAVTAHLYCTHPSVHEGKLSHLRSRQI 1607

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDVC 108
            S     ++ R   L   +  +     D  
Sbjct: 1608 SNLNLYRLGRARRLGGLMVATKFEPSDNW 1636


>gi|330723844|gb|AEC46214.1| Ribonuclease III [Mycoplasma hyorhinis MCLD]
          Length = 225

 Score =  158 bits (401), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 64/219 (29%), Positives = 103/219 (47%), Gaps = 12/219 (5%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTL 58
           MS+++   L   +     N SL E+A TH S  H    +  YE LEFLGD +L L  S  
Sbjct: 1   MSSIK--ELLLNLNIVANNLSLYEQAFTHKSYHHVRPNKPHYEMLEFLGDSLLNLQTSLY 58

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           +F + D+  EG  ++  + +VS+ + ++++ +L L+ +++V+    +      T I+AD+
Sbjct: 59  IFKNIDAKNEGNATILRSQIVSSVSFAKISDKLQLSKYLKVAKGSEE--ILNNTKIKADI 116

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           +ESL AA+YLD   +    FV K       K S K  +D K+E QE   +    + +Y  
Sbjct: 117 LESLTAAIYLDQDKKTFEDFVKKILHSLVKKQSKKVIKDPKSEFQEIIQSFSKSSIKYIT 176

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
                   D  F   +         G   S + AE  AA
Sbjct: 177 KKT-----DKFFESELIWDNKIYGHGKGNSIKEAELEAA 210


>gi|229025290|ref|ZP_04181710.1| Ribonuclease 3 [Bacillus cereus AH1272]
 gi|228736043|gb|EEL86618.1| Ribonuclease 3 [Bacillus cereus AH1272]
          Length = 163

 Score =  158 bits (401), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 1/145 (0%)

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             EGEL+    ++V   +  + A EL   S + +             ++ ADV E+ I A
Sbjct: 1   MSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEAFIGA 60

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           LYLD G+E    F+ +    +  +       D K++LQE          EY++    GP 
Sbjct: 61  LYLDQGLETVWGFLKEVVYPKINEGAFSHVMDYKSQLQELIQRDGSGNVEYQILQEKGPA 120

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKR 209
           H+  F   V ++ +A   G   SK+
Sbjct: 121 HNREFVSRVTLNNVALGLGSGKSKK 145


>gi|308485595|ref|XP_003104996.1| CRE-DCR-1 protein [Caenorhabditis remanei]
 gi|308257317|gb|EFP01270.1| CRE-DCR-1 protein [Caenorhabditis remanei]
          Length = 1941

 Score =  158 bits (401), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 63/257 (24%), Positives = 103/257 (40%), Gaps = 46/257 (17%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHF 63
            +++ LE+RIGY F  R+ L +A TH+S  ++     Y+RLEFLGD +L  +I+  LF   
Sbjct: 1673 QFANLEERIGYRFKERAYLVQAFTHASYINNRVTGCYQRLEFLGDAVLDYMITRYLFEDV 1732

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLAS-FIRVSSDLRKDVCSFM----------- 111
                 G L+   ++LV+    + +A + +    FI +   L   +  F+           
Sbjct: 1733 RQYSPGVLTDLRSALVNNTIFASLAVKFEFQKHFIAMCPGLHHMIEKFVKLCADRNFDTN 1792

Query: 112  ------------------------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQR 146
                                         DV ES+  A+YLD G  +  T+ V  +  + 
Sbjct: 1793 FNAEMYMVTTEEEIDEGHEEDVEVPKALGDVFESVAGAIYLDSGRNLDTTWQVLFHMMRS 1852

Query: 147  ALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
             + S      R    EL E   +K   +   ++   SG     +  V V++       GM
Sbjct: 1853 TIDSCCANPPRSPIRELMELEASKARFSKMERIL-ESG-----KVRVTVDVGNNMRFTGM 1906

Query: 205  DCSKRAAEQVAAAEVLK 221
              + R A+  AA   LK
Sbjct: 1907 GRNYRIAKATAAKRALK 1923



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 22   LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
            LL  ALT S+ +     S ER E +GD  L    +  L++      EG+LS   +  VS 
Sbjct: 1427 LLLTALTTSNAADGM--SLERFETIGDSFLKFATTDYLYHTLQDQHEGKLSFARSKEVSN 1484

Query: 82   ETCSQVARELDLASFI 97
                ++ ++L +   I
Sbjct: 1485 CNLYRLGKKLGIPQLI 1500


>gi|71051733|gb|AAH98796.1| Dicer1 protein [Rattus norvegicus]
          Length = 401

 Score =  158 bits (400), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 60/252 (23%), Positives = 100/252 (39%), Gaps = 43/252 (17%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 145 FENFEKKINYIFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 204

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107
               G L+   ++LV+    + +A + D   + +                 +  +  + +
Sbjct: 205 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 264

Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149
            S                +     D+ ESL  A+Y+D G+  EV         +    K 
Sbjct: 265 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKF 324

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 325 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVELVGKGKFKGVGRSYR 377

Query: 210 AAEQVAAAEVLK 221
            A+  AA   L+
Sbjct: 378 IAKSAAARRALR 389


>gi|238814324|ref|NP_001154925.1| endoribonuclease Dicer [Danio rerio]
 gi|229485378|sp|Q6TV19|DICER_DANRE RecName: Full=Endoribonuclease Dicer
          Length = 1865

 Score =  158 bits (400), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 98/252 (38%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E +I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1609 FLNFESKINYTFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1668

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107
                G L+   ++LV+    + +A + D   + +                 +  +  + +
Sbjct: 1669 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1728

Query: 108  CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149
             S                +     D+ ESL  A+Y+D G+  E          +    K 
Sbjct: 1729 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1788

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1789 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1841

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1842 IAKSAAARRALR 1853



 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 1275 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1332

Query: 79   VSAETCSQVARELDLASFIRVS 100
            VS     ++ ++  L S + VS
Sbjct: 1333 VSNCNLYRLGKKKGLPSRMVVS 1354


>gi|37266499|gb|AAQ90464.1| Dicer1 [Danio rerio]
          Length = 1243

 Score =  158 bits (400), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 98/252 (38%), Gaps = 43/252 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E +I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 987  FLNFESKINYTFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1046

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107
                G L+   ++LV+    + +A + D   + +                 +  +  + +
Sbjct: 1047 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1106

Query: 108  CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149
             S                +     D+ ESL  A+Y+D G+  E          +    K 
Sbjct: 1107 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1166

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1167 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 1219

Query: 210  AAEQVAAAEVLK 221
             A+  AA   L+
Sbjct: 1220 IAKSAAARRALR 1231



 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%)

Query: 19  NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 653 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 710

Query: 79  VSAETCSQVARELDLASFIRVS 100
           VS     ++ ++  L S + VS
Sbjct: 711 VSNCNLYRLGKKKGLPSRMVVS 732


>gi|242018047|ref|XP_002429494.1| dicer-1, putative [Pediculus humanus corporis]
 gi|212514432|gb|EEB16756.1| dicer-1, putative [Pediculus humanus corporis]
          Length = 2179

 Score =  158 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 63/255 (24%), Positives = 104/255 (40%), Gaps = 45/255 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ I Y F +RS L +ALTH+S   +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1914 FDIFEESIKYRFRDRSYLLQALTHASYYPNRLTDCYQRLEFLGDAVLDYLITRHLYEDSR 1973

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111
                G L+   ++LV+    + +A   D   + R +   L + V  F+            
Sbjct: 1974 HHSPGALTDLRSALVNNTIFASLAVRHDFHKYFRHLCPSLNEVVDRFVRFQQANGHAISE 2033

Query: 112  ------------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153
                                   DV ES+  A++LD G+ +   +   Y++    +   F
Sbjct: 2034 EFYLIEEEECEEAEDVEVPKALGDVFESVAGAIFLDSGMSLDAVW-RVYYRIMKNEIELF 2092

Query: 154  RRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDHD----PRFTVVVEISGLAPAQGMDCSK 208
              +  K+ ++E     F + PE   T + G         R  V VE+ G     G+  + 
Sbjct: 2093 STNVPKSPIREL----FELEPE---TAQFGKPEKLADGRRVRVSVEVFGKGIFNGIGRNY 2145

Query: 209  RAAEQVAAAEVLKRE 223
            R A+  AA   LK+ 
Sbjct: 2146 RIAKCTAAKCALKQL 2160



 Score = 60.9 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 2/95 (2%)

Query: 14   GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
            G+   + SL+ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+LS 
Sbjct: 1633 GHPGPSPSLILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYCIYENVHEGKLSH 1690

Query: 74   RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108
              +  VS     ++ R+  L   +  +     D  
Sbjct: 1691 LRSKQVSNFNLYRLGRKKMLGESMVATKFEPHDNW 1725


>gi|166368821|ref|YP_001661094.1| ribonuclease III [Microcystis aeruginosa NIES-843]
 gi|166091194|dbj|BAG05902.1| ribonuclease III [Microcystis aeruginosa NIES-843]
          Length = 234

 Score =  158 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 55/208 (26%), Positives = 101/208 (48%), Gaps = 10/208 (4%)

Query: 5   RYSTLEKRIGYA---FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +  TL +++G +        LL+ ALTH SIS    ++YE+LEF+GD ++ L  + +L  
Sbjct: 11  QLKTLVEKLGLSADVPVKWDLLDLALTHPSISRD--KNYEQLEFVGDSVVRLAAAEVLLE 68

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +  A  GE +   + +VS  T ++ A       ++ VSS    D    ++   AD  E+
Sbjct: 69  TYPEALVGEFAALRSMMVSDRTLAEFADRYGFERYLLVSSSTSIDQAGRISR-LADAFEA 127

Query: 122 LIAALYLD-GGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++ ALYL    + +  +++D+  +++A  ++    R++ K  LQEW  A +   P+Y V 
Sbjct: 128 VLGALYLSTQTMVLVRSWLDEPLREKAAEIRRDPARQNYKDALQEWTQATYKKLPQYLVK 187

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDC 206
             +  D +  F   V ++      G   
Sbjct: 188 EINSLDQER-FCAEVWLNDQKLGVGTGR 214


>gi|289711908|gb|ACC62400.2| ribonuclease III [Penaeus monodon]
          Length = 2473

 Score =  158 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 66/255 (25%), Positives = 103/255 (40%), Gaps = 46/255 (18%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y   E++IGY F +RS L +A TH+S   +     Y+RLEFLGD +L  LI+  L+    
Sbjct: 2217 YQVFEEKIGYTFRDRSYLLQAFTHASYYKNRLTGCYQRLEFLGDAVLDYLITRHLYEDKR 2276

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFM------------ 111
                G L+   ++LV+    + +A + D   + R  S  L + +  F+            
Sbjct: 2277 QHSPGALTDLRSALVNNTIFASLAVKYDYHKYFRHFSPGLDRVIRDFVKMQEENGHKINE 2336

Query: 112  ------------------TSIQADVVESLIAALYLDGG--IEVAGTFVDKYWKQRALK-S 150
                                   DV ES+  A++LD G  ++   +       +   + S
Sbjct: 2337 EYYFMEEDECEAAEDIEVPKALGDVFESVAGAIFLDSGSSLDAVWSVYYTMMCREIEQFS 2396

Query: 151  GKFRRDAKTELQEWA--HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
            G   +    EL E     AKFG  PE ++        D +  V VEI G     G+  + 
Sbjct: 2397 GVVPKSPIRELLEMEPETAKFGK-PE-RLV-------DGKVRVSVEIFGKGSFSGVGRNY 2447

Query: 209  RAAEQVAAAEVLKRE 223
            R A+  AA   L+  
Sbjct: 2448 RIAKSTAAKRALRHL 2462



 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 60/149 (40%), Gaps = 14/149 (9%)

Query: 11   KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
              + +   + S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +    EG+
Sbjct: 1953 DLLNHPGPSPSVILQALTMSNANDGV--NLERLETIGDSFLKYAITTFLYCTYPQRHEGK 2010

Query: 71   LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAAL 126
            LS   +  VS     ++ +   L   +  +     D       F+     ++ E+LI   
Sbjct: 2011 LSYLRSKQVSNLNLYRLGKRKGLGECMVATKFEPHDNWLPPGYFVPR---ELEEALI--- 2064

Query: 127  YLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
              D G+      +        L S + RR
Sbjct: 2065 --DSGVPAGHWNMADLPGLHDLASDEIRR 2091


>gi|304373283|ref|YP_003856492.1| Ribonuclease III [Mycoplasma hyorhinis HUB-1]
 gi|304309474|gb|ADM21954.1| Ribonuclease III [Mycoplasma hyorhinis HUB-1]
          Length = 225

 Score =  158 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 63/219 (28%), Positives = 104/219 (47%), Gaps = 12/219 (5%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTL 58
           MS+++   L   +     + SL E+A TH S  H    +  YE LEFLGD +L L  S  
Sbjct: 1   MSSIK--ELLLNLNIVANDLSLYEQAFTHKSYHHVRPNKPHYEMLEFLGDSLLNLQTSLY 58

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           +F + D+  EG  ++  + +VS+ + ++++ +L L+ +++V+    + +    T I+AD+
Sbjct: 59  IFKNIDAKNEGNATILRSQIVSSVSFAKISEKLQLSKYLKVAKGSEEIL--NNTKIKADI 116

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           +ESL AA+YLD   +    FV K       K S K  +D K+E QE   +    + +Y  
Sbjct: 117 LESLTAAIYLDQDKKTFEDFVKKILHSLVKKQSKKVIKDPKSEFQEIIQSFSKSSIKYIT 176

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
                   D  F   +         G   S + AE  AA
Sbjct: 177 KKT-----DKFFESELIWDNKIYGHGKGNSIKEAELEAA 210


>gi|221126960|ref|XP_002167020.1| PREDICTED: similar to ribonuclease III, nuclear [Hydra
           magnipapillata]
          Length = 576

 Score =  158 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 66/221 (29%), Positives = 105/221 (47%), Gaps = 17/221 (7%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHS----YQESYERLEFLGDRILGLLIS 56
           ++  ++ TLEK+IG  F + SLL KALTHS          + +YE+LEFLGD IL  + S
Sbjct: 350 LTLQKFVTLEKKIGVEFTHISLLVKALTHSVKGLDDETITRGNYEQLEFLGDAILKYICS 409

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             L+ HF + +EG L++   SL++ +  ++ + E+DL  +I    +             +
Sbjct: 410 DYLYKHFPNHQEGHLTLLRISLINLKCLAKASEEIDLIKYIVFHPNHEPST--TNEKTFS 467

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA---KTELQEWAHAKFGVT- 172
           DV E+ +AAL+LD G+      ++     R LK     +D    K++LQ+  +  +  T 
Sbjct: 468 DVFEAFLAALHLDKGLLHCQKLIEVCILSR-LKEFILSQDWLEPKSQLQQCCNTYYNKTK 526

Query: 173 ------PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
                 P YK    S  +    F V V  +G     G   S
Sbjct: 527 PDKVEHPVYKRIKLSTINGVQNFKVGVYFNGKRLGTGQGRS 567



 Score = 70.1 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 52/132 (39%), Gaps = 17/132 (12%)

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
            S  LF  F     G+LS+  + LV  E    +A +L+L  F+ V    R  V   +   
Sbjct: 229 SSMHLFLMFPEKGPGKLSIFRSGLVQGEHLRTIANKLNLVDFLLVKH--RSQVLQNLGYF 286

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA-KTELQEWAHAKFGVTP 173
             + VE++I A+YLD G+E A + +   +     +         K  LQ           
Sbjct: 287 LGNAVEAVIGAVYLDAGLEKADSLITNLYFNDDEELSTIWNKYKKDPLQ----------I 336

Query: 174 EYKVTFRSGPDH 185
           EY     SG  H
Sbjct: 337 EY----ESGDRH 344


>gi|123969345|ref|YP_001010203.1| putative ribonuclease III [Prochlorococcus marinus str. AS9601]
 gi|123199455|gb|ABM71096.1| putative ribonuclease III [Prochlorococcus marinus str. AS9601]
          Length = 249

 Score =  158 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 91/204 (44%), Gaps = 7/204 (3%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
             +A  HSS       +YE+LEF GD +L L  S  +   +     GE S     +VS E
Sbjct: 42  FNQAFIHSS--EDKIINYEKLEFFGDAVLRLAASNFIEKKYPQMSVGERSELRAQIVSDE 99

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY-LDGGIEVAGTFVDK 141
             +++  ++D+   I        D  S  T I  +  E+LI A+Y     I+    ++D 
Sbjct: 100 WLTKLGEKIDIEKLIIKGPKAIGDENSKNT-IICEATEALIGAIYKCFSSIKEVNLWLDD 158

Query: 142 YWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISGL 198
            W++         ++  +KT LQEW  +K    P YK+   S  + DP RF   + I GL
Sbjct: 159 IWEEDSEIFLKSPYKFKSKTVLQEWCQSKGFDLPVYKIIEVSKKNGDPERFYCNIFIEGL 218

Query: 199 APAQGMDCSKRAAEQVAAAEVLKR 222
             +     S + AE  AA  ++++
Sbjct: 219 KESSAFGKSHKQAETNAARVLIEK 242


>gi|145358264|ref|NP_197532.3| DCL4 (DICER-LIKE 4); RNA binding / protein binding / ribonuclease III
            [Arabidopsis thaliana]
 gi|322510021|sp|P84634|DCL4_ARATH RecName: Full=Dicer-like protein 4
 gi|73672051|gb|AAZ80387.1| dicer-like 4 [Arabidopsis thaliana]
 gi|332005447|gb|AED92830.1| dicer-like protein 4 [Arabidopsis thaliana]
          Length = 1702

 Score =  158 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 88/242 (36%), Gaps = 29/242 (11%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               TLE ++ Y F ++ LL +A  H S +      Y+RLEFLGD +L  L+++  F  F 
Sbjct: 1291 NLETLENQLDYKFLHKGLLVQAFIHPSYNRHGGGCYQRLEFLGDAVLDYLMTSYFFTVFP 1350

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK------------------- 105
              K G+L+   +  V+ E  + VA    L  F+   S                       
Sbjct: 1351 KLKPGQLTDLRSLSVNNEALANVAVSFSLKRFLFCESIYLHEVIEDYTNFLASSPLASGQ 1410

Query: 106  DVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY-WKQRALKSGKFRRDAKTELQEW 164
                    +  D+VES + AL+LD G  +   +     +          +     EL E 
Sbjct: 1411 SEGPRCPKVLGDLVESCLGALFLDCGFNLNHVWTMMLSFLDPVKNLSNLQISPIKELIEL 1470

Query: 165  AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGMDCSKRAAEQVAAAEVLK 221
              +        +    +  D    FTV ++++             +KR   + AA  ++ 
Sbjct: 1471 CQSYKWD----REISATKKDGA--FTVELKVTKNGCCLTVSATGRNKREGTKKAAQLMIT 1524

Query: 222  RE 223
              
Sbjct: 1525 NL 1526



 Score = 70.1 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 59/158 (37%), Gaps = 44/158 (27%)

Query: 25   KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
            +ALT  +     + S ERLE LGD  L   +S  LF H DS  EGEL+ R +++V+    
Sbjct: 1105 EALT--TEKCHERLSLERLEVLGDAFLKFAVSRHLFLHHDSLDEGELTRRRSNVVNNSNL 1162

Query: 85   SQVARELDLASFIR----------------------------------VSSDLRKDV--- 107
             ++A + +L  +IR                                  +           
Sbjct: 1163 CRLAIKKNLQVYIRDQALDPTQFFAFGHPCRVTCDEVASKEVHSLNRDLGILESNTGEIR 1222

Query: 108  ---CSFM--TSIQADVVESLIAALYLDGGIEVAGTFVD 140
                         ADVVE+L+ A  +D G + A  F+ 
Sbjct: 1223 CSKGHHWLYKKTIADVVEALVGAFLVDSGFKGAVKFLK 1260



 Score = 39.3 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 140  DKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
            D+  ++  +K+G    + AK+ L E   A     P ++     GP H   F   V + 
Sbjct: 1604 DRLPQKAIIKAGGPSSKTAKSLLHETCVANCWKPPHFECCEEEGPGHLKSFVYKVILE 1661


>gi|332005448|gb|AED92831.1| dicer-like protein 4 [Arabidopsis thaliana]
          Length = 1688

 Score =  158 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 88/242 (36%), Gaps = 29/242 (11%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               TLE ++ Y F ++ LL +A  H S +      Y+RLEFLGD +L  L+++  F  F 
Sbjct: 1277 NLETLENQLDYKFLHKGLLVQAFIHPSYNRHGGGCYQRLEFLGDAVLDYLMTSYFFTVFP 1336

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK------------------- 105
              K G+L+   +  V+ E  + VA    L  F+   S                       
Sbjct: 1337 KLKPGQLTDLRSLSVNNEALANVAVSFSLKRFLFCESIYLHEVIEDYTNFLASSPLASGQ 1396

Query: 106  DVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY-WKQRALKSGKFRRDAKTELQEW 164
                    +  D+VES + AL+LD G  +   +     +          +     EL E 
Sbjct: 1397 SEGPRCPKVLGDLVESCLGALFLDCGFNLNHVWTMMLSFLDPVKNLSNLQISPIKELIEL 1456

Query: 165  AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGMDCSKRAAEQVAAAEVLK 221
              +        +    +  D    FTV ++++             +KR   + AA  ++ 
Sbjct: 1457 CQSYKWD----REISATKKDGA--FTVELKVTKNGCCLTVSATGRNKREGTKKAAQLMIT 1510

Query: 222  RE 223
              
Sbjct: 1511 NL 1512



 Score = 70.1 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 59/158 (37%), Gaps = 44/158 (27%)

Query: 25   KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
            +ALT  +     + S ERLE LGD  L   +S  LF H DS  EGEL+ R +++V+    
Sbjct: 1091 EALT--TEKCHERLSLERLEVLGDAFLKFAVSRHLFLHHDSLDEGELTRRRSNVVNNSNL 1148

Query: 85   SQVARELDLASFIR----------------------------------VSSDLRKDV--- 107
             ++A + +L  +IR                                  +           
Sbjct: 1149 CRLAIKKNLQVYIRDQALDPTQFFAFGHPCRVTCDEVASKEVHSLNRDLGILESNTGEIR 1208

Query: 108  ---CSFM--TSIQADVVESLIAALYLDGGIEVAGTFVD 140
                         ADVVE+L+ A  +D G + A  F+ 
Sbjct: 1209 CSKGHHWLYKKTIADVVEALVGAFLVDSGFKGAVKFLK 1246



 Score = 39.3 bits (91), Expect = 0.40,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 140  DKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
            D+  ++  +K+G    + AK+ L E   A     P ++     GP H   F   V + 
Sbjct: 1590 DRLPQKAIIKAGGPSSKTAKSLLHETCVANCWKPPHFECCEEEGPGHLKSFVYKVILE 1647


>gi|100271832|gb|ABF69320.1| ribonuclease III [Ehrlichia ruminantium]
          Length = 137

 Score =  157 bits (399), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 49/131 (37%), Positives = 73/131 (55%)

Query: 92  DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151
           +L  FI +S   R    +  ++   + +E+LI A+YLDGG++ A  F+  +WK  A    
Sbjct: 1   NLGIFIIMSDGERSCGGANNSNNLENALEALIGAIYLDGGLKAAKDFIFLFWKNSATHMK 60

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
              +DAKT LQEWA +K    P Y +  +SGPDH+P FTV V I+          +K+ A
Sbjct: 61  VPPQDAKTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVGINSHETLHATGQNKKLA 120

Query: 212 EQVAAAEVLKR 222
           EQ AA+ +L +
Sbjct: 121 EQKAASLMLAK 131


>gi|47459246|ref|YP_016108.1| ribonuclease III [Mycoplasma mobile 163K]
 gi|81614213|sp|Q6KHN3|RNC_MYCMO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|47458575|gb|AAT27897.1| ribonuclease III [Mycoplasma mobile 163K]
          Length = 246

 Score =  157 bits (399), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 61/228 (26%), Positives = 105/228 (46%), Gaps = 9/228 (3%)

Query: 1   MSAL-RYSTLEKRI---GYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLL 54
           M+   +   LE  +      F +     +ALTH + ++ +   ESY+ LEF+GD IL + 
Sbjct: 1   MNKKTKIEGLENFLTLNNIIFKDIKYYIQALTHKTYANEHANIESYDILEFIGDAILQMK 60

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
            S  +F HF +  EGE S+     V +   S+++++L L+  + +S             I
Sbjct: 61  SSIFIFQHFQNITEGEASLIRAKNVCSSGLSELSKKLGLSKLLLISKGSEH--LRENVKI 118

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTP 173
            AD+ ES +AA+YLD G E    F+ + +      +  +  +D K+  QE+  +      
Sbjct: 119 NADLFESFVAAIYLDLGDEKLEEFLKEIFYPYISTTNLESIKDPKSSFQEYIQSYSNEII 178

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           EYK+T          F   +  +G+    G   +K+ AE+ AA   L+
Sbjct: 179 EYKITQLENELRSELFKAELMHNGITYGVGFGKTKKVAEEEAATRALE 226


>gi|326334475|ref|ZP_08200686.1| ribonuclease 3 [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325693244|gb|EGD35172.1| ribonuclease 3 [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 255

 Score =  157 bits (399), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 58/225 (25%), Positives = 98/225 (43%), Gaps = 16/225 (7%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALT---HSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           + +  +EK +G+        E+A T   + S    +  SYERLEFLGD ILG +I+  +F
Sbjct: 17  IFFIEMEKLLGFPPKEIRYYEEAFTLGSNRSQDLGHPISYERLEFLGDAILGAVIAHFVF 76

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
               +  EG+L+     +V  +  +Q+  EL L  +++              +I  +++E
Sbjct: 77  LQAPNKDEGDLTKMRTRMVRRDNLNQIGEELQLREYLQTERKSLLLSG----NISGNLLE 132

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKV 177
           +L+ A+YLD G + A  F+ +      L            K+ + EWA  K+  T  +  
Sbjct: 133 ALVGAIYLDRGYQKATEFIHRILIDANLSMKDLENKVISYKSLMVEWAQ-KYHKTIAF-- 189

Query: 178 TFRSGPDHD---PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
                P +      F   V I+     +  D SK+ AE+ AA   
Sbjct: 190 IAEEDPTYKGKIKYFQARVMINDKVYTKAHDTSKKKAEERAAKRA 234


>gi|260654634|ref|ZP_05860124.1| ribonuclease III [Jonquetella anthropi E3_33 E1]
 gi|260630650|gb|EEX48844.1| ribonuclease III [Jonquetella anthropi E3_33 E1]
          Length = 239

 Score =  157 bits (399), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 77/220 (35%), Positives = 113/220 (51%), Gaps = 12/220 (5%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFN 61
           A   S  +KR G  F + +LL+ ALTH S +        +RLEFLGD ++   +S  LF 
Sbjct: 12  AQDLSAFQKRSGLVFRDPALLDLALTHRSFAAERGGGDNQRLEFLGDALIEGAVSAELFC 71

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
              +  EG+L+ R   LV  ++ ++ A +L L   +R      +       +++AD  E+
Sbjct: 72  SRTNDDEGKLTRRRARLVCQKSLARCADKLGLGELLRRGRGQTEAT----EAMKADAFEA 127

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           L AALYLDGG E     VD    +          DAKT L +W  +   VT  ++ T R+
Sbjct: 128 LAAALYLDGGAEAMRGLVDLILSEPL-----APLDAKTLLCQWGAS-CRVTVTFEETGRT 181

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           GPDH+P F V V+ +G   A G   S+ AAEQ AA +V++
Sbjct: 182 GPDHEPHFFVRVQ-AGSETACGEGPSRLAAEQDAAGKVIR 220


>gi|282855648|ref|ZP_06264959.1| ribonuclease 3 (Ribonuclease III) (RNase III) [Pyramidobacter
           piscolens W5455]
 gi|282586496|gb|EFB91753.1| ribonuclease 3 (Ribonuclease III) (RNase III) [Pyramidobacter
           piscolens W5455]
          Length = 253

 Score =  157 bits (399), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 90/222 (40%), Gaps = 11/222 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNH 62
           R  +L+KR GY F +  LL  A T  S +       + ERLEFLGD  L LL+   L+  
Sbjct: 13  RADSLQKRTGYQFRDPELLRLAFTQRSGAGGPNPSMNNERLEFLGDAALSLLVGEALYRE 72

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +  A EG +++  + LV     S    E      +RV   +         ++  D VE+ 
Sbjct: 73  YPEADEGFMTIERSKLVCGRNLSAWGYEAGFDQMLRVCDGVEVS-----DAMVEDSVEAA 127

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
             A +LDGG++     +  +       +G    D++  L+     +    P Y    R  
Sbjct: 128 AGAFFLDGGLDAVRALLQSFSDYPDQGAG---FDSRRHLERDCSYEKLGAPRYDTMRRR- 183

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            +    F   V +       G+   +  AE+ AA + + R G
Sbjct: 184 ANGKIIFESSVSLDKEPSGTGIGADRTEAERNAARDAMCRLG 225


>gi|126697134|ref|YP_001092020.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9301]
 gi|126544177|gb|ABO18419.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9301]
          Length = 249

 Score =  157 bits (399), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 56/204 (27%), Positives = 93/204 (45%), Gaps = 7/204 (3%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
             +A  HSS       +YE+LEF GD +L L  S  +   +     GE S     +VS E
Sbjct: 42  FNQAFIHSS--EDKIINYEKLEFFGDAVLRLAASNFIEKKYPQLSVGERSELRAQIVSDE 99

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY-LDGGIEVAGTFVDK 141
             +++ R++++   I        D  S  T I  +  E+LI A+Y     I+    ++D 
Sbjct: 100 WLTKLGRKIEIDKLIIKGPKALGDENSKNT-IIGEATEALIGAVYKCFNSIQEINLWLDN 158

Query: 142 YWKQRALKSGKFRRDAKTE--LQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGL 198
            W++ + +  K     K++  LQEW  +K    P YK+   S  + D  RF+  + I GL
Sbjct: 159 IWEEDSEQFLKAPYKYKSKTVLQEWCQSKGFDLPVYKIMEVSKKNGDLKRFSCDIFIEGL 218

Query: 199 APAQGMDCSKRAAEQVAAAEVLKR 222
             +     S + AE  AA  ++++
Sbjct: 219 KESSAFGKSHKQAETNAARVLIEK 242


>gi|298491860|ref|YP_003722037.1| ribonuclease III ['Nostoc azollae' 0708]
 gi|298233778|gb|ADI64914.1| ribonuclease III ['Nostoc azollae' 0708]
          Length = 237

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 61/213 (28%), Positives = 110/213 (51%), Gaps = 12/213 (5%)

Query: 5   RYSTLEKRIGYAFANR---SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +   L +++G +  +     LL+ ALTH+++S S   +YE+LEF+GD ++ L+ + +L+ 
Sbjct: 11  QLENLVQKLGLSPDSPIKWPLLDLALTHATVSESA--NYEQLEFVGDAVVRLVAAVVLWE 68

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           H+     G+ +   + LVS    SQ+ARE  L  ++ V+     D      S  AD  E+
Sbjct: 69  HYPYCSVGDFAAIRSVLVSDRILSQLAREYGLELYLLVAGSATADHVGQ-ESRLADAFEA 127

Query: 122 LIAALYLD-GGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++ ALYL    +E+   ++D ++++  + ++    R + K  LQEW  A+F + PEY+V 
Sbjct: 128 VLGALYLSTHNLELIRPWLDPHFQELTKEIRLDPARLNYKAALQEWTQAQFKILPEYRVM 187

Query: 179 FRSGPD--HDPRFTVVVEISGLAPAQGMDCSKR 209
             + P   H+  F   V +      QG   S +
Sbjct: 188 EVNQPHRTHER-FMAEVWLHKKMLGQGKGRSIK 219


>gi|225430894|ref|XP_002269915.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1380

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 61/242 (25%), Positives = 98/242 (40%), Gaps = 29/242 (11%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNH 62
            +  S LE  + Y+F + SLL +ALTH S         Y+RLEFLGD +L  L++  L++ 
Sbjct: 1133 VNVSYLESILNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLMTMHLYHK 1192

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK-----DVCSF------- 110
            +     G L+   ++ V+ +  +Q A +  L   I  SS          V +F       
Sbjct: 1193 YPGMSPGLLTDLRSASVNNDCYAQSAVKAKLHQHILHSSQELHRHIVVTVGNFDKLPVES 1252

Query: 111  ---------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSGKFRRDAKT 159
                        +  DV+ESL  A+ +D     EV    +    +   +     +     
Sbjct: 1253 TFGWESESSFPKVLGDVIESLAGAILVDSDYNKEVVFQSIRPLLEP-LITPETVKLHPAR 1311

Query: 160  ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            EL E    +     +  V  ++G       T+ VE +G          KR A ++A+ EV
Sbjct: 1312 ELGELCQKEHY-DIKRVVVSQNGKA---SVTIEVEANGAKHKHTSTSDKRTATKLASKEV 1367

Query: 220  LK 221
            LK
Sbjct: 1368 LK 1369



 Score = 52.8 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 52/131 (39%), Gaps = 29/131 (22%)

Query: 41   ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-- 98
            E LE LGD  L    S  LF  F +  EG LSV+   ++S  +  ++  +  L  FIR  
Sbjct: 981  ESLETLGDSFLKYAASQQLFKTFQNHHEGLLSVKKERIISNASLCKLGCDRKLPGFIRNE 1040

Query: 99   ----------------------VSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGI 132
                                  + S  RK   S    ++    ADVVE+LI A +L  G 
Sbjct: 1041 SFDPKKWIIAGDQSRSHVFGEELLSSTRKIYVSERRKLKSKRIADVVEALIGA-FLSTGG 1099

Query: 133  EVAGTFVDKYW 143
            E A     ++ 
Sbjct: 1100 ETAALIFMRWL 1110


>gi|255733032|ref|XP_002551439.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240131180|gb|EER30741.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 623

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 60/227 (26%), Positives = 103/227 (45%), Gaps = 24/227 (10%)

Query: 16  AFANRSLLEKALTHSSISHSYQE---------SYERLEFLGDRILGLLISTLLFNHFDSA 66
              +  L E+  TH S  ++              ERLEFLGD IL  L++ ++F  F++ 
Sbjct: 249 KINDNKLFERVFTHKSFVNNKNYLNNSELLKLHNERLEFLGDSILNNLVTLIIFKEFNNC 308

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIR--VSSDLRKDVCSFMTSIQADVVESLIA 124
            EGELS    SL+  +T  + A E    + ++  ++ +  K        I ADV E+ I 
Sbjct: 309 NEGELSKIRASLICNKTLLKFAYEYGFDTRLKSFINKEAIKSGDQ---KIYADVFEAYIG 365

Query: 125 ALYLDGG--IEVAGTFVDKYWKQ------RALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           AL ++ G  ++    ++ K ++       + L       +AK+EL      +  + P+YK
Sbjct: 366 ALGIERGNDLKEVQDWLIKLFEPLIFELKKDLNKEPLDNNAKSELYSLI-GRTDMHPQYK 424

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V    G   + +F V   ++G    +G++ S + A   AA E LK +
Sbjct: 425 VI-EEGDGVEKKFIVSCMMNGEEIGKGVEKSIKDAGIRAAMEALKNK 470


>gi|297735235|emb|CBI17597.3| unnamed protein product [Vitis vinifera]
          Length = 1340

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 61/242 (25%), Positives = 98/242 (40%), Gaps = 29/242 (11%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNH 62
            +  S LE  + Y+F + SLL +ALTH S         Y+RLEFLGD +L  L++  L++ 
Sbjct: 1093 VNVSYLESILNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLMTMHLYHK 1152

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK-----DVCSF------- 110
            +     G L+   ++ V+ +  +Q A +  L   I  SS          V +F       
Sbjct: 1153 YPGMSPGLLTDLRSASVNNDCYAQSAVKAKLHQHILHSSQELHRHIVVTVGNFDKLPVES 1212

Query: 111  ---------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSGKFRRDAKT 159
                        +  DV+ESL  A+ +D     EV    +    +   +     +     
Sbjct: 1213 TFGWESESSFPKVLGDVIESLAGAILVDSDYNKEVVFQSIRPLLEP-LITPETVKLHPAR 1271

Query: 160  ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            EL E    +     +  V  ++G       T+ VE +G          KR A ++A+ EV
Sbjct: 1272 ELGELCQKEHY-DIKRVVVSQNGKA---SVTIEVEANGAKHKHTSTSDKRTATKLASKEV 1327

Query: 220  LK 221
            LK
Sbjct: 1328 LK 1329



 Score = 52.4 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 52/131 (39%), Gaps = 29/131 (22%)

Query: 41   ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-- 98
            E LE LGD  L    S  LF  F +  EG LSV+   ++S  +  ++  +  L  FIR  
Sbjct: 941  ESLETLGDSFLKYAASQQLFKTFQNHHEGLLSVKKERIISNASLCKLGCDRKLPGFIRNE 1000

Query: 99   ----------------------VSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGI 132
                                  + S  RK   S    ++    ADVVE+LI A +L  G 
Sbjct: 1001 SFDPKKWIIAGDQSRSHVFGEELLSSTRKIYVSERRKLKSKRIADVVEALIGA-FLSTGG 1059

Query: 133  EVAGTFVDKYW 143
            E A     ++ 
Sbjct: 1060 ETAALIFMRWL 1070


>gi|254526942|ref|ZP_05138994.1| ribonuclease III [Prochlorococcus marinus str. MIT 9202]
 gi|221538366|gb|EEE40819.1| ribonuclease III [Prochlorococcus marinus str. MIT 9202]
          Length = 249

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 91/205 (44%), Gaps = 7/205 (3%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
             +A  HSS       +YE+LEF GD +L L  S  +   +     GE S     +VS E
Sbjct: 42  FNQAFIHSS--EDKIINYEKLEFFGDAVLRLAASNFIEKKYPHMSVGERSELRAQIVSDE 99

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY-LDGGIEVAGTFVDK 141
             +++  E+D+   I        D  S  T I  +  E+LI A+Y     I+    ++D 
Sbjct: 100 WLTKLGGEIDIEKLIIKGPKALGDENSKNT-IIGESTEALIGAVYKCFNSIQEVNLWLDD 158

Query: 142 YWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGL 198
            W++         ++  +KT LQEW  +K    P YK+   S  + D  RF+  + I GL
Sbjct: 159 IWEKDSEIFLKAPYKFKSKTVLQEWCQSKGFDLPVYKIIEFSKKNGDPKRFSCDIYIEGL 218

Query: 199 APAQGMDCSKRAAEQVAAAEVLKRE 223
             +     S + AE  AA  ++++ 
Sbjct: 219 KESSAFGKSHKQAETNAARVLIEKL 243


>gi|157414210|ref|YP_001485076.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9215]
 gi|157388785|gb|ABV51490.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9215]
          Length = 249

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 7/205 (3%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
             +A  HSS       +YE+LEF GD +L L  S  +   +     GE S     +VS E
Sbjct: 42  FNQAFIHSS--EDKIINYEKLEFFGDAVLRLAASNFIEKKYPQMSVGERSELRAQIVSDE 99

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY-LDGGIEVAGTFVDK 141
             +++  ++D+   I        D  S  T I  +  E+LI A+Y     I+    ++D 
Sbjct: 100 WLTKLGEKIDIEKLIIKGPKALGDENSKNT-IIGEATEALIGAVYKCFNSIQEVNLWLDD 158

Query: 142 YWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGL 198
            W++         ++  +KT LQEW  +K    P YK+   S  + D  RF+  + I GL
Sbjct: 159 IWEKDSEIFLKAPYKFKSKTVLQEWCQSKGFDLPIYKIIEFSKKNGDPKRFSCDIHIEGL 218

Query: 199 APAQGMDCSKRAAEQVAAAEVLKRE 223
             +     S + AE  AA  ++++ 
Sbjct: 219 KESSAFGKSHKQAETNAARVLIEKL 243


>gi|312069719|ref|XP_003137813.1| hypothetical protein LOAG_02227 [Loa loa]
 gi|307767024|gb|EFO26258.1| hypothetical protein LOAG_02227 [Loa loa]
          Length = 1928

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 61/259 (23%), Positives = 100/259 (38%), Gaps = 47/259 (18%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
             ++S LE  IGY F +R+ L +A TH+S   +     Y+RLEFLGD +L  +I+  LF H
Sbjct: 1660 FQFSKLEDFIGYRFNDRAYLLQAFTHASYYKNRITGCYQRLEFLGDAVLDYVITRFLFQH 1719

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI-----RVSSDLRKDVC--------- 108
                  G L+   ++LV+    + +A + +          R+   + K VC         
Sbjct: 1720 SSHYSPGVLTDLRSALVNNTIFASLAIKHNFHKHFIAMCPRLHHMIEKFVCLCTEKNLSS 1779

Query: 109  -----------------------SFMTSIQADVVESLIAALYLDGG--IEVAGTFVDKYW 143
                                     +     D+ ES+  A+YLD G  +++         
Sbjct: 1780 ANFNEEMYMVTTEEEIDEGEEEDIEVPKAMGDIFESVAGAIYLDSGRSLDIVWRVFYNLM 1839

Query: 144  KQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K+   +      R    EL E    +   +   ++   +G     +  V V+I G     
Sbjct: 1840 KETIDECCSNPPRSPIRELLEMEPERARFSKLERIL-ETG-----KVRVTVDIQGKCRFT 1893

Query: 203  GMDCSKRAAEQVAAAEVLK 221
            GM  S R A+  AA   L+
Sbjct: 1894 GMGRSYRIAKCTAAKRALR 1912



 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 2/86 (2%)

Query: 23   LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
            L +ALT S+ S     + ERLE +GD  L   ++  LF+      EG+LS   +  VS  
Sbjct: 1412 LLQALTLSNASDGI--NLERLETVGDSFLKYAVTDYLFHTNPEQHEGKLSFARSKEVSNC 1469

Query: 83   TCSQVARELDLASFIRVSSDLRKDVC 108
               ++ R+ +L S I  S     D  
Sbjct: 1470 NLYRLGRKHNLPSLIIGSKFDPNDGW 1495


>gi|148907962|gb|ABR17101.1| unknown [Picea sitchensis]
          Length = 685

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 58/248 (23%), Positives = 102/248 (41%), Gaps = 32/248 (12%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +    LE+ +GY F+ + LL +A  H S +      Y+RLEFLGD +L  +I++ L++ +
Sbjct: 220 IDIDELERLLGYNFSYKGLLLEAFAHPSFNEHNGGCYQRLEFLGDAVLDYIITSYLYSVY 279

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----VSSDLRKDVCSFM------- 111
              K G L+   +  V+ E+ + VA    L  ++      +SS + K V           
Sbjct: 280 PDMKPGYLTDMRSMTVNNESFACVAVRHGLYMYLIQKSDSLSSAVTKYVDFMKALFTADR 339

Query: 112 ----------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTE 160
                       +  D+VES   AL +D G ++   + +     Q  +           E
Sbjct: 340 DSCDEPEPKCPKVLGDIVESFAGALVIDTGFDLDCVWKLMLNILQPIVTPETLCLQPVRE 399

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-----AQGMDCSKRAAEQVA 215
           L E       +T +Y V    G  +   + V  ++SG          G   S + A++VA
Sbjct: 400 LSEVCQ-HHNLTLDY-VKASKGNGNG--YLVEAKVSGKKVSGSVGGTGTRTSIKDAKKVA 455

Query: 216 AAEVLKRE 223
           + + L + 
Sbjct: 456 SKDALLKL 463



 Score = 62.8 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 48/142 (33%), Gaps = 42/142 (29%)

Query: 41  ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-- 98
           ERLE LGD  L   +S  LF  +D   EG+L+ + ++ +      + A+     ++IR  
Sbjct: 49  ERLEVLGDAFLKYAVSRRLFLVYDKLDEGQLTKKRSNAIKNSNLYKRAKGKGFPAYIRDE 108

Query: 99  ---------VSS-------DLRKDVCSFMT------------------------SIQADV 118
                    +              +  +                             ADV
Sbjct: 109 YFDPKQYFALGRPCKNVCTPELVHMIHYFEGDNTMTDTDFTSVKCTKRHHWLHMKTIADV 168

Query: 119 VESLIAALYLDGGIEVAGTFVD 140
           VE+LI A  +D G   A  F+ 
Sbjct: 169 VEALIGAYLVDSGFGAALAFLK 190



 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 5/77 (6%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VVVEISGLAPAQGMD- 205
              +F   AK+ L E+   K    P +      G  H   FT   V+ + G    + +  
Sbjct: 600 DIDQFLGSAKSSLNEFCQKKSWEVPSWVCYQEEGMPHQKSFTYMAVLRLPGNISIECLGE 659

Query: 206 --CSKRAAEQVAAAEVL 220
              +KR A + A+   L
Sbjct: 660 PMKNKRLAMESASRGAL 676


>gi|313206470|ref|YP_004045647.1| rnase iii [Riemerella anatipestifer DSM 15868]
 gi|312445786|gb|ADQ82141.1| RNAse III [Riemerella anatipestifer DSM 15868]
 gi|315023589|gb|EFT36593.1| Ribonuclease III [Riemerella anatipestifer RA-YM]
 gi|325336084|gb|ADZ12358.1| dsRNA-specific ribonuclease [Riemerella anatipestifer RA-GD]
          Length = 247

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 55/213 (25%), Positives = 96/213 (45%), Gaps = 11/213 (5%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           LEK +G      S  ++A +  S S     +Y+RLEFLGD +LG ++S  L+  +    E
Sbjct: 30  LEKILGIQPKEVSWYQEAFSLKSTSSQL--NYDRLEFLGDAVLGSIVSYYLYRQYPQESE 87

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G L+   + +V+ +  +Q+  +L+L S +       K+   F+  +  +++E+L+ A+Y+
Sbjct: 88  GFLTQMKSKIVNRKNLNQIGEKLNLTSLVL------KNGSKFVADLSGNLLEALVGAIYM 141

Query: 129 DGGIEVAGTFVDK--YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           D G E     V          LK        K+ L EW+     +  +YK      P   
Sbjct: 142 DFGYEKCQKVVLSKILTHSEMLKLENKIISYKSLLLEWSQKN-KIKIDYKTEEEFLPSKV 200

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
             F   + + G   A   + SK+ +E+ AA   
Sbjct: 201 KMFKTYIFVGGSKVASATETSKKKSEEKAAQRA 233


>gi|147833654|emb|CAN77284.1| hypothetical protein VITISV_043738 [Vitis vinifera]
          Length = 1296

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 96/242 (39%), Gaps = 29/242 (11%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNH 62
            +  S LE  + Y+F + SLL ++LTH S         Y+RLEFLGD +L  L++  L++ 
Sbjct: 1049 VNVSYLESILNYSFRDPSLLVESLTHGSYMLPEIPRCYQRLEFLGDAVLDYLMTMHLYHK 1108

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC-------------- 108
            +     G L+   ++ V+ +  +Q A +  L   I  SS                     
Sbjct: 1109 YPGMSPGLLTDLRSASVNNDCYAQSAVKAKLHQHILHSSQELHRHIVVTVGBFDKLPXES 1168

Query: 109  -------SFMTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSGKFRRDAKT 159
                   S    +  DV+ESL  A+ +D     EV    +    +   +     +     
Sbjct: 1169 TFGWESESSFPKVLGDVIESLAGAILVDSDYNKEVVFQSIRPLLEP-LITPETVKLHPAR 1227

Query: 160  ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            EL E    +     +  V  ++G       T+ VE +G          KR A ++A+ EV
Sbjct: 1228 ELXELCQKEHY-XIKRVVVSQNGKA---SVTIEVEANGAKHKHTSTSDKRTAXKLASKEV 1283

Query: 220  LK 221
            LK
Sbjct: 1284 LK 1285



 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 52/131 (39%), Gaps = 29/131 (22%)

Query: 41   ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-- 98
            E LE LGD  L    S  LF  F +  EG LSV+   ++S  +  ++  +  L  FIR  
Sbjct: 897  ESLETLGDSFLKYAASQQLFKTFQNHHEGLLSVKKERIISNASLCKLGCDRKLPGFIRNE 956

Query: 99   ----------------------VSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGI 132
                                  + S  RK   S    ++    ADVVE+LI A +L  G 
Sbjct: 957  SFDPKKWIIAGDQSRSHVFGEELLSSTRKIYVSERRKLKSKRIADVVEALIGA-FLSTGG 1015

Query: 133  EVAGTFVDKYW 143
            E A     ++ 
Sbjct: 1016 ETAALIFMRWL 1026


>gi|300775975|ref|ZP_07085834.1| ribonuclease III [Chryseobacterium gleum ATCC 35910]
 gi|300505108|gb|EFK36247.1| ribonuclease III [Chryseobacterium gleum ATCC 35910]
          Length = 254

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 58/226 (25%), Positives = 102/226 (45%), Gaps = 11/226 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + L+K +G    N +L  +A +  + S +   +YERLEFLGD +LG +IS  LF  +  A
Sbjct: 28  TELKKVLGTEVQNIALYREAFSLKNSSKNQDSNYERLEFLGDSVLGTIISCHLFQTYPQA 87

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG L+   + +V+ +  +++  +L L + ++     +    +   +I  ++ E+LI A+
Sbjct: 88  NEGYLTQMKSKIVNRKNLNKLGEDLKLTNLLQ----KQNSSSALGENISGNLFEALIGAV 143

Query: 127 YLDGGIEVAGTFV-DKYWKQRAL-KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           YLD   +     + +K      + K        K  L EW+  K  V  +Y+       +
Sbjct: 144 YLDFHYDACKRIILEKLLTPSEINKLENKIVSYKGLLLEWSQKK-KVNIKYETCEEIQAN 202

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL----KREGIW 226
               F   V +     A   + SK+ AE+ AA        K+E I 
Sbjct: 203 KSVVFRCHVWLGEEKIANATETSKKKAEEKAAQRAFYILNKKENIL 248


>gi|170591572|ref|XP_001900544.1| Type III restriction enzyme, res subunit family protein [Brugia
            malayi]
 gi|158592156|gb|EDP30758.1| Type III restriction enzyme, res subunit family protein [Brugia
            malayi]
          Length = 1856

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 61/259 (23%), Positives = 98/259 (37%), Gaps = 47/259 (18%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
             ++S LE  IGY F +R+ L +A TH+S   +     Y+RLEFLGD +L  +I+  LF H
Sbjct: 1588 FQFSKLEDCIGYRFHDRAYLLQAFTHASYYKNRITGCYQRLEFLGDAVLDYVITRFLFQH 1647

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI-----RVSSDLRKDVC--------- 108
                  G L+   ++LV+    + +A + +          R+   + K VC         
Sbjct: 1648 SAHYSPGVLTDLRSALVNNTIFASLAVKYNFHKHFIAMCPRLHHMIEKFVCLCAEKNLSS 1707

Query: 109  -----------------------SFMTSIQADVVESLIAALYLDGG--IEVAGTFVDKYW 143
                                     +     D+ ES+  A+YLD G  +           
Sbjct: 1708 ANFNEEMYMVTTEEEIDEGEEEDIEVPKAMGDIFESVAGAIYLDSGRSLNTVWRVFYNLM 1767

Query: 144  KQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            K+   +      R    EL E    +   +   ++   +G     +  V V+I G     
Sbjct: 1768 KETINECCSNPPRSPIRELLEMEPERARFSKLERIL-ETG-----KVRVTVDIQGKCRFT 1821

Query: 203  GMDCSKRAAEQVAAAEVLK 221
            GM  S R A+  AA   L+
Sbjct: 1822 GMGRSYRIAKCTAAKRALR 1840



 Score = 63.9 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 2/86 (2%)

Query: 23   LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
            L +ALT S+ S     + ERLE +GD  L   ++  LF+      EG+LS   +  VS  
Sbjct: 1340 LLQALTLSNASDGI--NLERLETVGDSFLKYAVTDYLFHTNPEQHEGKLSFARSKEVSNC 1397

Query: 83   TCSQVARELDLASFIRVSSDLRKDVC 108
               ++ R+ +L S I  S     D  
Sbjct: 1398 NLYRLGRKHNLPSLIIGSKFDPNDGW 1423


>gi|255536416|ref|YP_003096787.1| Ribonuclease III [Flavobacteriaceae bacterium 3519-10]
 gi|255342612|gb|ACU08725.1| Ribonuclease III [Flavobacteriaceae bacterium 3519-10]
          Length = 254

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 61/216 (28%), Positives = 98/216 (45%), Gaps = 9/216 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDS 65
           + + K  G +  N +L  +A +  + S   Q ++YERLEFLGD +LG +IS  LF+ +  
Sbjct: 27  NEISKITGCSVQNINLYREAFSLKTASPRTQVKNYERLEFLGDSVLGAIISCHLFSTYPH 86

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A EG L+   + +V+ +  +++  EL L  F++   +      S  TS   +++E+LI A
Sbjct: 87  ANEGYLTQMKSKIVNRKNLNKLGDELGLTGFLQ---NESPSTLSENTS--GNLLEALIGA 141

Query: 126 LYLDGGIEVAGTFVDKYWK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           LYLD   E     V +         K        K+ L EW+  K      Y        
Sbjct: 142 LYLDVDYETCKKVVLERLLTPSEINKLENKIVSYKSLLLEWSQKK-KEHIRYDTEQEMQA 200

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
             +  F  V+ I+    A   + SK+ AE+ AA   
Sbjct: 201 GKNVVFRSVIWINDRKVANATETSKKKAEEKAAQRA 236


>gi|47210543|emb|CAF93935.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 479

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 99/252 (39%), Gaps = 43/252 (17%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +   E++I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 223 FENFERKISYTFQNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 282

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107
               G L+   ++LV+    + +A + D   + +                 +  +  + +
Sbjct: 283 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAISPELFHVIDDFVQFQLEKNEMQGM 342

Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149
            S                +     D+ ESL  A+Y+D G+  E          +    K 
Sbjct: 343 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 402

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 403 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 455

Query: 210 AAEQVAAAEVLK 221
            A+  AA   L+
Sbjct: 456 IAKSAAARRALR 467


>gi|168177333|pdb|3C4T|A Chain A, Structure Of Rnaseiiib And Dsrna Binding Domains Of Mouse
           Dicer
          Length = 265

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 61/252 (24%), Positives = 101/252 (40%), Gaps = 43/252 (17%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           + T EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 15  FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDXYQRLEFLGDAILDYLITKHLYEDPR 74

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107
               G L+   ++LV+    + +A + D   + +                 +  +  + +
Sbjct: 75  QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGM 134

Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149
            S                +     D+ ESL  A+Y+D G+  EV         +    K 
Sbjct: 135 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 194

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 195 SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 247

Query: 210 AAEQVAAAEVLK 221
            A+  AA   L+
Sbjct: 248 IAKSAAARRALR 259


>gi|307150902|ref|YP_003886286.1| ribonuclease III [Cyanothece sp. PCC 7822]
 gi|306981130|gb|ADN13011.1| ribonuclease III [Cyanothece sp. PCC 7822]
          Length = 235

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 55/210 (26%), Positives = 101/210 (48%), Gaps = 10/210 (4%)

Query: 5   RYSTLEKRIGYAFA---NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
              TL +++G       N SLL+ AL H S S     +Y++LEF+GD ++ L  + +L  
Sbjct: 11  ELKTLVQKLGLPDTAAVNWSLLDLALIHPSFSREV--NYQQLEFVGDAVVRLAAAEVLLE 68

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +  A  GE +   + +VS  T ++ A    L  ++ ++S+      +   S  AD  E+
Sbjct: 69  TYPDALVGEFAALRSMMVSDRTLAEFADVYGLERYL-LTSERSSTDEAGRVSRLADGFEA 127

Query: 122 LIAALYLD-GGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           L+ ALYL    +++   ++D+  + +A  ++    R + K  LQEW  A + + PEY+V 
Sbjct: 128 LLGALYLSTHNMKLIRPWLDELLQNKAAEIRLDPARLNYKDALQEWTQAHYKLLPEYRVQ 187

Query: 179 FRSGPDH-DPRFTVVVEISGLAPAQGMDCS 207
                ++ + RF   V ++      G   +
Sbjct: 188 EVLLNNNKEERFLAEVWLNDQKLGAGTGRT 217


>gi|15828634|ref|NP_325994.1| ribonuclease III (RNase III) [Mycoplasma pulmonis UAB CTIP]
 gi|14089576|emb|CAC13336.1| RIBONUCLEASE III (RNASE III) [Mycoplasma pulmonis]
          Length = 241

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 58/212 (27%), Positives = 99/212 (46%), Gaps = 9/212 (4%)

Query: 18  ANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNH--FDSAKEGELSVR 74
             +++  +A TH++  + Y+ +SYE LEFLGD IL   +S  +F +   +    G  ++ 
Sbjct: 35  KEKNIFFQAFTHTTFHNLYKAKSYEMLEFLGDAILQKNVSEYIFKNTESNKINPGTATLI 94

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
            + LV+    S +A+EL L  F+ +     + V      + +D+ ESL AA+Y+  G +V
Sbjct: 95  RSKLVNKTCLSNLAKELKLDKFLLLPKGQEELV--KNEKVLSDLFESLCAAIYITKGNDV 152

Query: 135 AGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
              F+ KY   +      K  ++AK   QE   A      +Y ++F         +   +
Sbjct: 153 LEVFLQKYLYPKMQDLEYKTLKNAKGRFQEIFQATTKSAGKYVISFDE---EKKIYEAKL 209

Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
             S      G   +K+ AEQ AA + LK+  I
Sbjct: 210 IHSETIYGIGYGKNKKEAEQNAAEDALKKLVI 241


>gi|228472309|ref|ZP_04057075.1| ribonuclease 3 [Capnocytophaga gingivalis ATCC 33624]
 gi|228276512|gb|EEK15236.1| ribonuclease 3 [Capnocytophaga gingivalis ATCC 33624]
          Length = 232

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 60/224 (26%), Positives = 94/224 (41%), Gaps = 17/224 (7%)

Query: 10  EKRIGYAFANRSLLEKALTH---SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           E+ +G+        E+A T     + S     SYERLEFLGD ILG +I+  +F      
Sbjct: 2   EQLLGFPPKEIHYYEEAFTLGTVRTDSAQPHISYERLEFLGDAILGAVIAHFVFLQAPDK 61

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+L+     +V  E  +Q+  +L L  ++               +I  +++E+L+ A+
Sbjct: 62  NEGDLTKMRTRMVRRENLNQIGEDLRLREYLLADKHTLLSG-----NIAGNLLEALVGAI 116

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           YLD G   A  F+ +      L            K+ + EWA  K+  T  +       P
Sbjct: 117 YLDRGYSKATEFIHRILIDTNLSMRDLENKVISYKSLMVEWAQ-KYHKTIAF--VSEEDP 173

Query: 184 DHD---PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            +      F   V I+    A+  D SK+ AE+ AA     R G
Sbjct: 174 TYKGRTKYFQAKVMINDKVFAKAHDTSKKKAEERAAKRAFFRAG 217


>gi|123967024|ref|YP_001012105.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9515]
 gi|123201390|gb|ABM72998.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9515]
          Length = 249

 Score =  155 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 56/204 (27%), Positives = 94/204 (46%), Gaps = 7/204 (3%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
             +ALTHSS       +YE+LEF GD +L L  S  +   + +   G  S   + LVS E
Sbjct: 42  FNEALTHSSADKIV--NYEKLEFFGDAVLRLSASDFIERKYKNMSVGNRSELRSQLVSDE 99

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY-LDGGIEVAGTFVDK 141
             +++ +++ +   I        D  S   +I A+  E+LI A+Y     I     ++D 
Sbjct: 100 WLTELGKKIFIEKVIVKGPKAIGDENS-KDTIIAETSEALIGAIYKCFNSIHEVNIWLDN 158

Query: 142 YWKQRAL--KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGL 198
           +W++ A        + +AK+ LQEW        P YK+   S    D  RF+  + ++G 
Sbjct: 159 FWEKDAELYLKAPHKYNAKSALQEWCQKHGFDLPIYKIYEVSSSHGDPKRFSCDIYLNGS 218

Query: 199 APAQGMDCSKRAAEQVAAAEVLKR 222
             A     S + AE+ AA  ++++
Sbjct: 219 KEASSFGNSHKKAEKNAATILIEK 242


>gi|281339672|gb|EFB15256.1| hypothetical protein PANDA_009266 [Ailuropoda melanoleuca]
          Length = 1917

 Score =  155 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 59/245 (24%), Positives = 100/245 (40%), Gaps = 36/245 (14%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1668 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1727

Query: 65   SAKEGELSVRFNSLVSAETCSQVA--------RELDLASFI--RVSSDLRKDVCSF---- 110
                G L+   ++LV+    + +A            +  F+  ++  +  + + S     
Sbjct: 1728 QHSPGVLTDLRSALVNNTIFASLAYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRS 1787

Query: 111  -----------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK-SGKFRRD 156
                       +     D+ ESL  A+Y+D G+  E+         +    K S    R 
Sbjct: 1788 EEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRS 1847

Query: 157  AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
               EL E        +P  +        +D +  V VE+ G    +G+  S R A+  AA
Sbjct: 1848 PVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAA 1900

Query: 217  AEVLK 221
               L+
Sbjct: 1901 RRALR 1905



 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 1295 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1352

Query: 79   VSAETCSQVARELDLASFIRVS 100
            VS     ++ ++  L S + VS
Sbjct: 1353 VSNCNLYRLGKKKGLPSRMVVS 1374


>gi|119510841|ref|ZP_01629966.1| Ribonuclease III [Nodularia spumigena CCY9414]
 gi|119464520|gb|EAW45432.1| Ribonuclease III [Nodularia spumigena CCY9414]
          Length = 239

 Score =  155 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 62/212 (29%), Positives = 106/212 (50%), Gaps = 10/212 (4%)

Query: 5   RYSTLEKRIGYAF---ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +  +L +R+G          LL+ ALTH ++S S   +YE+LEF+GD ++ L  + +L+ 
Sbjct: 11  QLESLVRRLGLPPGLPIKWDLLDLALTHPTVSESA--NYEQLEFVGDAVVRLAAAVVLWE 68

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +     G+ +   + LVS    +Q+ARE  L  ++ V+     D      S  AD  E+
Sbjct: 69  TYPDCPVGDFAAIRSVLVSDRILAQLAREYSLQLYLLVAGSATSDKIGL-ESRLADAFEA 127

Query: 122 LIAALYLD-GGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++ ALYL    +E+   ++D + K+ A  ++    R + K  LQEW  A+F V PEY+VT
Sbjct: 128 VLGALYLSTNNLELIRPWLDFHLKKLATEIRLDPARLNYKAALQEWTQAEFKVLPEYRVT 187

Query: 179 FRSGPDHDP-RFTVVVEISGLAPAQGMDCSKR 209
             +  + +  RF   V +      +G   S +
Sbjct: 188 EVNQSNQNQERFAAEVWLHDNKLGEGKGRSIK 219


>gi|307448395|pdb|3O2R|A Chain A, Structural Flexibility In Region Involved In Dimer
           Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc)
           From Campylobacter Jejuni
 gi|307448397|pdb|3O2R|C Chain C, Structural Flexibility In Region Involved In Dimer
           Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc)
           From Campylobacter Jejuni
          Length = 170

 Score =  155 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 49/141 (34%), Positives = 80/141 (56%), Gaps = 2/141 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               LE+ + Y F +++LL  ALTH S   SY  + ERLEFLGD +L L++   LF+ F 
Sbjct: 27  NIEKLEQSLTYEFKDKNLLIHALTHKSFKKSY--NNERLEFLGDAVLDLVVGEYLFHKFA 84

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+LS    +LV+ ++ +++A  L+L  FI +S     +      SI +D +E++I 
Sbjct: 85  KDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALEAIIG 144

Query: 125 ALYLDGGIEVAGTFVDKYWKQ 145
           A++L+ G E A T   +  ++
Sbjct: 145 AIHLEAGFEFAKTIALRLIEK 165


>gi|17552834|ref|NP_498761.1| DiCer Related family member (dcr-1) [Caenorhabditis elegans]
 gi|21431882|sp|P34529|DCR1_CAEEL RecName: Full=Endoribonuclease dcr-1
 gi|15145374|gb|AAA28101.2| Dicer related protein 1, partially confirmed by transcript evidence
            [Caenorhabditis elegans]
          Length = 1845

 Score =  155 bits (392), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 60/258 (23%), Positives = 101/258 (39%), Gaps = 46/258 (17%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
             +++ LE++IGY F  R+ L +A TH+S  ++     Y+RLEFLGD +L  +I+  LF  
Sbjct: 1576 FQFTQLEEKIGYRFKERAYLVQAFTHASYINNRVTGCYQRLEFLGDAVLDYMITRYLFED 1635

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLAS-FIRVSSDLRKDVCSF----------- 110
                  G L+   ++LV+    + +A + +    FI +   L   +  F           
Sbjct: 1636 SRQYSPGVLTDLRSALVNNTIFASLAVKFEFQKHFIAMCPGLYHMIEKFVKLCSERNFDT 1695

Query: 111  ------------------------MTSIQADVVESLIAALYLDGG--IEVAGTFVDKYWK 144
                                    +     D+ ES+  A+YLD G  ++     +    +
Sbjct: 1696 NFNAEMYMVTTEEEIDEGQEEDIEVPKAMGDIFESVAGAIYLDSGRNLDTTWQVIFHMMR 1755

Query: 145  -QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203
                L      R    EL E+  +K   +   ++   SG     +  V VE+       G
Sbjct: 1756 GTIELCCANPPRSPIRELMEFEQSKVRFSKMERIL-ESG-----KVRVTVEVVNNMRFTG 1809

Query: 204  MDCSKRAAEQVAAAEVLK 221
            M  + R A+  AA   LK
Sbjct: 1810 MGRNYRIAKATAAKRALK 1827



 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 2/100 (2%)

Query: 22   LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
            LL  ALT S+ +     S ER E +GD  L    +  L++      EG+LS   +  VS 
Sbjct: 1331 LLLTALTTSNAADGM--SLERFETIGDSFLKFATTDYLYHTLLDQHEGKLSFARSKEVSN 1388

Query: 82   ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
                ++ ++L +   I  +     D       I     ++
Sbjct: 1389 CNLYRLGKKLGIPQLIVANKFDAHDSWLPPCYIPTCDFKA 1428


>gi|113953295|ref|YP_729437.1| ribonuclease III [Synechococcus sp. CC9311]
 gi|113880646|gb|ABI45604.1| ribonuclease III [Synechococcus sp. CC9311]
          Length = 254

 Score =  155 bits (392), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 53/197 (26%), Positives = 90/197 (45%), Gaps = 9/197 (4%)

Query: 19  NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
               L +ALTH+S        +E+LEFLGD +L L  S  + +       GE S     L
Sbjct: 33  QLEHLNEALTHTSTG--LARHHEQLEFLGDAVLRLAASDFIESEHPQMPVGERSALRAQL 90

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG-IEVAGT 137
           VS    +++   + +   ++V S    D  +  ++++A+  E+LI A+Y   G +     
Sbjct: 91  VSDRWLAELGTTIGIEVLLQVGSKASGDQAA-RSTLRAEHCEALIGAIYRISGKVSPVQC 149

Query: 138 FVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVE 194
           ++  YW++  R + +   R ++K+ LQEW  A+    P Y+    +    DP RF   V 
Sbjct: 150 WLTPYWRETSRDVLADPHRGNSKSALQEWTQAQGLGLPIYECHEVNKRHGDPRRFHCQVF 209

Query: 195 ISGL--APAQGMDCSKR 209
           I       A+    S+R
Sbjct: 210 IQDQNSPTAEAWGGSRR 226


>gi|195424855|gb|ACF96960.1| dicer-1 [Litopenaeus vannamei]
          Length = 2473

 Score =  155 bits (392), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 65/255 (25%), Positives = 102/255 (40%), Gaps = 46/255 (18%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y   E++IGY F +RS L +A TH+S   +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 2217 YQVFEEKIGYTFRDRSYLLQASTHASYYKNRLTDCYQRLEFLGDAVLDYLITRHLYEDKR 2276

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSF------------- 110
                G L+   ++LV+    + +A + D   + R  S    + +  F             
Sbjct: 2277 QHSPGALTDLRSALVNNTIFASLAVKYDYHKYFRHFSPGPDRVIRDFVKMQEENGHKINE 2336

Query: 111  -----------------MTSIQADVVESLIAALYLDGG--IEVAGTFVDKYWKQRALK-S 150
                             +     DV ES+  A++LD G  ++   +           + S
Sbjct: 2337 EYYFMEEDEREAAEDIEVPKALGDVFESVAGAIFLDSGSSLDAVWSVYYTMMCPEIERFS 2396

Query: 151  GKFRRDAKTELQEW--AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
            G   +    EL E     AKFG  PE ++        D +  V VEI G     G+  + 
Sbjct: 2397 GVVPKSPIRELLEMEPETAKFGK-PE-RLV-------DGKVRVSVEIFGKGSFSGVGRNY 2447

Query: 209  RAAEQVAAAEVLKRE 223
            R A+  AA   L+  
Sbjct: 2448 RIAKSTAAKRALRHL 2462



 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 60/149 (40%), Gaps = 14/149 (9%)

Query: 11   KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
              + +   + S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +    EG+
Sbjct: 1953 DLLNHPGPSPSVILQALTMSNANDGV--NLERLETIGDSFLKYAITTFLYCTYPQRHEGK 2010

Query: 71   LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAAL 126
            LS   +  VS     ++ +   L   +  +     D       F+     ++ E+LI   
Sbjct: 2011 LSYLRSKQVSNLNLYRLGKRKGLGECMVATKFEPHDNWLPPGYFVPR---ELEEALI--- 2064

Query: 127  YLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
              D G+      +        L S + RR
Sbjct: 2065 --DSGVPAGHWNMADLPGLHDLASDEIRR 2091


>gi|225012041|ref|ZP_03702478.1| Ribonuclease III [Flavobacteria bacterium MS024-2A]
 gi|225003596|gb|EEG41569.1| Ribonuclease III [Flavobacteria bacterium MS024-2A]
          Length = 236

 Score =  155 bits (392), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 56/209 (26%), Positives = 99/209 (47%), Gaps = 12/209 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           +  L+K++     N+ L +KA THSS++   +E    ++ERLEFLGD +L  +++  LFN
Sbjct: 8   FIQLQKKLNIRTRNKELYKKAFTHSSVNLKDKEGNTINFERLEFLGDALLSTIVAEYLFN 67

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
               AKEGEL+     +VS    + + +++ L     +SS       +F  +I  +++ES
Sbjct: 68  FHPEAKEGELTKLRAKIVSRSQLNSIGKQMGLFELADISS----HHKTFGENIHGNLIES 123

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVT 178
           LI AL++D G      +V KY     +   +        K+ L EW+  +     E +  
Sbjct: 124 LIGALFIDKGYNKTKDYVLKYMLDPYIDMDELDNMVLSYKSLLIEWSQKQKQEL-EIRTE 182

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              G D +  +T  + +     ++    S
Sbjct: 183 NDGGLDPNINYTCQIYLGKKLISKARGLS 211


>gi|163754630|ref|ZP_02161752.1| putative ribonuclease III [Kordia algicida OT-1]
 gi|161325571|gb|EDP96898.1| putative ribonuclease III [Kordia algicida OT-1]
          Length = 244

 Score =  155 bits (392), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 54/208 (25%), Positives = 92/208 (44%), Gaps = 12/208 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFN 61
           ++ LE  +G+    + + +KA TH S+    +     +YERLEFLGD +L  +IS  LF 
Sbjct: 19  FAELEDILGFKTKRKKIYKKAFTHRSMNKKDAKGNSVNYERLEFLGDAMLSSVISAYLFT 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
              S  EG L+   + +VS E  +++ R+L L   ++     R    +F  +I  ++ E+
Sbjct: 79  EVPSGNEGYLTKMRSKIVSREHLNELGRDLKLIDLVQ----SRIPKDNFGENIHGNLFEA 134

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVT 178
           LI A++LD G +    F+        +   +        K+ L EW   +     +Y V 
Sbjct: 135 LIGAIFLDKGYKYCERFIHYRVISPYVDIERLEGKVISYKSLLIEWCQKEKK-NFKYDVY 193

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDC 206
             +G D    F V + I      +    
Sbjct: 194 EDTGNDELKHFAVKLFIDNRVVGKARAT 221


>gi|255565079|ref|XP_002523532.1| Ribonuclease III, putative [Ricinus communis]
 gi|223537239|gb|EEF38871.1| Ribonuclease III, putative [Ricinus communis]
          Length = 1633

 Score =  155 bits (392), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 106/245 (43%), Gaps = 29/245 (11%)

Query: 2    SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
             ++  S+LE  + + F NR L+ +A  H S +      Y+RLEFLGD +L  LI++ LF+
Sbjct: 1203 PSIDVSSLEDSLDHQFVNRGLVLQAFVHPSYNKHGGGCYQRLEFLGDAVLDYLITSYLFS 1262

Query: 62   HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-----------------LR 104
             +   K G L+   ++LV+    + VA +     F+   S                  + 
Sbjct: 1263 VYPKLKPGLLTDLRSALVNNRAFAIVAVDRSFNEFLICDSGNLSEAIETYVNFVKRPAVE 1322

Query: 105  KDV--CSFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTEL 161
            KD         +  D+VES I A++LD G ++   + +   +    L S     +   EL
Sbjct: 1323 KDSLEGPKCPKVLGDLVESCIGAIFLDTGFDLNCIWKLMLSFLDPILNSSNVLLNPFREL 1382

Query: 162  QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP---AQGMDCSKRAAEQVAAAE 218
             E+  +      ++    R     D  F V  +++G      A   + +K+ A ++A+ +
Sbjct: 1383 HEFCESHKWKL-QFPTLKR-----DMNFLVEAKVTGKDICLDASANNSNKKEAIRIASEQ 1436

Query: 219  VLKRE 223
            ++ + 
Sbjct: 1437 IIVKL 1441



 Score = 66.3 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 55/157 (35%), Gaps = 42/157 (26%)

Query: 41   ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-- 98
            ERLE LGD  L   +   LF   D+  EGEL+ + ++ V+     ++A   +L  +IR  
Sbjct: 1034 ERLEILGDAFLKFAVGRHLFLLHDTLDEGELTRKRSNAVNNSNLLKLASRRNLQVYIRDQ 1093

Query: 99   --------------------------VSSDLRKDVCSFMT--------------SIQADV 118
                                       SS+         T                 ADV
Sbjct: 1094 PFDPRQFFALGHPCPVICTKESEGSIHSSNRSNAKGQENTIEVRCSRGHHWLYKKTIADV 1153

Query: 119  VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
            VE+L+ A  +D G   A  F+     +  +++    +
Sbjct: 1154 VEALVGAFIVDSGFRAATAFLKWLGIRVNIEASDVTK 1190



 Score = 36.2 bits (83), Expect = 3.7,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 17/40 (42%)

Query: 157  AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
            AK+ L +   A     P ++  +  GP H   F+  V + 
Sbjct: 1551 AKSRLHDICAANCWKPPLFECCYEEGPSHLKSFSYKVIVE 1590


>gi|40063138|gb|AAR37985.1| ribonuclease III [uncultured marine bacterium 561]
          Length = 149

 Score =  154 bits (391), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 43/147 (29%), Positives = 63/147 (42%), Gaps = 2/147 (1%)

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
                + +  +  L   + +    RK       SI AD VE++  A+ LD G + A   +
Sbjct: 1   RGTFLAALGEKYALGECLTLGVGERKSGGRHRASILADTVEAIAGAMLLDAGYDNAAPVI 60

Query: 140 DKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
             ++     +      +D+KT LQEW  A+    P Y +    GPDH   F VV  I G 
Sbjct: 61  LHWFADALGELQVDGDKDSKTLLQEWLQARNLPLPSYDLVSVEGPDHAQEFEVVCLIKGQ 120

Query: 199 APA-QGMDCSKRAAEQVAAAEVLKREG 224
             A  G   S+R AEQ AA+  +   G
Sbjct: 121 KNAFSGRGSSRRNAEQQAASVAIGELG 147


>gi|218439615|ref|YP_002377944.1| ribonuclease III [Cyanothece sp. PCC 7424]
 gi|218172343|gb|ACK71076.1| Ribonuclease III [Cyanothece sp. PCC 7424]
          Length = 235

 Score =  154 bits (390), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 50/197 (25%), Positives = 93/197 (47%), Gaps = 15/197 (7%)

Query: 19  NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           + SLL+ AL H S S     +Y++LEF+GD ++ L  + +L   +  A  GE +   + +
Sbjct: 28  DWSLLDLALIHPSFSKEV--NYQQLEFVGDAVVRLAAAEVLLETYPEAPVGEFAALRSIM 85

Query: 79  VSAETCSQVARELDLASFIR----VSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIE 133
           VS  T ++ A    L  ++     VS D    +        AD  E+++ ALYL    ++
Sbjct: 86  VSDRTLAEFADVFGLERYLLTAAYVSGDEAGRISR-----LADAFEAVLGALYLSTHTMQ 140

Query: 134 VAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH-DPRFT 190
           +   ++D+  +++A  +     R + K  LQEW  A + + P+Y+V      ++ + RF 
Sbjct: 141 LVRPWLDELLEKKAAEILQDPARLNYKDALQEWTQAHYKLLPQYRVQENPLKNNLEERFL 200

Query: 191 VVVEISGLAPAQGMDCS 207
             V ++      G   +
Sbjct: 201 AEVWLNDQKLGMGKGRT 217


>gi|26553818|ref|NP_757752.1| ribonuclease III [Mycoplasma penetrans HF-2]
 gi|26453825|dbj|BAC44156.1| ribonuclease III [Mycoplasma penetrans HF-2]
          Length = 244

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 100/227 (44%), Gaps = 15/227 (6%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61
           L  + +  ++G       L  +ALTH+S ++  +   +Y+RLEFLGD ++  LIS  LF 
Sbjct: 13  LDVTKILNKLGIKTNKYYLYVEALTHNSYNNEKKVGYTYQRLEFLGDAVISKLISEFLFK 72

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           +  S  E +++    +LV++E   + + EL L  +  +   +  +  +    I+AD+ E+
Sbjct: 73  N-KSLDEQKMTEIRKNLVNSEIFKKASEELGLLDYAFIGKGINLE--NDTKKIKADLFEA 129

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF-RRDAKTELQEWAH-----AKFGVTPEY 175
              A+++D G +    +++K   +    +      D K+ +QE                Y
Sbjct: 130 FAGAIFIDKGEDEVWKYLEKTILKYYENNELVNPIDYKSRIQELFQYNIAKKHKKAHFYY 189

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +         +  F   +    +    G+  +K+ A++ AA    ++
Sbjct: 190 QTVEIE----NNMFKSSLIYDEIIYGVGVGKTKKEAQKSAAKIAYEK 232


>gi|297812215|ref|XP_002873991.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297319828|gb|EFH50250.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1693

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 49/239 (20%), Positives = 88/239 (36%), Gaps = 29/239 (12%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
                LE ++ Y F ++ LL +A  H S +      Y+RLEFLGD +L  L+++  F  F 
Sbjct: 1283 NLEALENQLDYNFLHKGLLVQAFIHPSYNRHGGGCYQRLEFLGDAVLDYLMTSYFFTVFP 1342

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK------------------- 105
              K G+L+   +  V+ +  + VA    L  F+   S                       
Sbjct: 1343 KLKPGQLTDLRSLSVNNKALANVAVSFSLKRFLFCESVYLHEAIEDYTNFRAASPLASGP 1402

Query: 106  DVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY-WKQRALKSGKFRRDAKTELQEW 164
                    +  D+VES + AL+LD G  +   +     +          +     EL E 
Sbjct: 1403 SEGPRCPKVLGDLVESCLGALFLDCGFNLNHVWTMMLSFLDPVKNLSNLQISPIKELIEL 1462

Query: 165  AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGMDCSKRAAEQVAAAEVL 220
              +        +    +  D    F+V ++++             +KR + + AA  ++
Sbjct: 1463 CQSYKWD----REISATKKDGG--FSVELKVTKKGCCLTVSATGRNKRESTKKAAQLMI 1515



 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/156 (25%), Positives = 60/156 (38%), Gaps = 43/156 (27%)

Query: 25   KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
            +ALT  +     + S ERLE LGD  L   +S  LF H D   EGEL+ R +  V+    
Sbjct: 1098 EALT--TEKCHERLSLERLEVLGDAFLKFAVSRHLFLHHDRLDEGELTRRRSKAVNNSNL 1155

Query: 85   SQVARELDLASFIR---------------------------------------VSSDLRK 105
             ++A + +L  +IR                                        +S++R 
Sbjct: 1156 CRLAIKRNLQVYIRDQALDPTQFFAFGHPCRVTCDEVTSEEVHSLNRVPGLLESNSEIRC 1215

Query: 106  DVCSFM--TSIQADVVESLIAALYLDGGIEVAGTFV 139
                        ADVVE+L+ A  +D G + A  F+
Sbjct: 1216 SKGHHWLYKKTIADVVEALVGAFLVDSGFKGAVKFL 1251



 Score = 38.5 bits (89), Expect = 0.70,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 140  DKYWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
            D+  ++  +++G+   + AK+ L E   A     P ++     GP H   F   V + 
Sbjct: 1596 DRLPQKTIIEAGRPSSKTAKSLLHETCVANCWKPPHFECCEEEGPGHLKSFFYKVILE 1653


>gi|157285013|gb|ABV31246.1| dicer-like 4 [Physcomitrella patens]
          Length = 1445

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 63/253 (24%), Positives = 110/253 (43%), Gaps = 29/253 (11%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            +S  + S LE  + Y F N+ LL +ALTH+S      + Y+RL FLGD +L  LI+   +
Sbjct: 1169 LSEAKVSELEILLNYKFQNKGLLVEALTHASCRRHSGDCYQRLGFLGDAVLDFLITKHFY 1228

Query: 61   NHFDSA--KEGELSVRFNSLVSAETCSQVARELDLASFIRVSS------------DLRKD 106
             +  +     G L+   ++ V+ E  ++VA   +L  ++  +S                D
Sbjct: 1229 ANSANLKRDPGLLTDLRSAAVNNECFARVAVRHNLHLYLLHNSSDLAARVDKYVHGSTTD 1288

Query: 107  VCSFMTS-------------IQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGK 152
            VC+   +             + +D+VESL  A++LD G ++   + V K   +  +    
Sbjct: 1289 VCALSEAFLLSKHLSCSSMQVLSDLVESLAGAVFLDSGYKLDTVWNVFKQLLKPLVTPAT 1348

Query: 153  FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
             R +   EL E    +    P YK    +  D D   TV ++        G    +++A 
Sbjct: 1349 LRLEPIRELWELCQTEKFGEPNYKKKREAMGDFDMTVTVELK-DETITGVGRKPDEKSAR 1407

Query: 213  QVAAAEVLKREGI 225
            +VAA + L+   +
Sbjct: 1408 KVAAIQALETLKV 1420



 Score = 78.6 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 40/132 (30%), Positives = 60/132 (45%), Gaps = 19/132 (14%)

Query: 21   SLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            +L+ +A+T    +   QES+  E LE LGD  L + +S  LF   +   EGELS R  +L
Sbjct: 1012 NLMLEAIT----TSKCQESFSLEGLELLGDAFLEVSVSERLFLLHNRLDEGELSKRRTNL 1067

Query: 79   VSAETCSQVARELDLASFIR---VSSDLRKDVCSFMT----------SIQADVVESLIAA 125
            +  +   ++ RE  + ++IR    S                         ADV E+LI A
Sbjct: 1068 ICNKMLERLGRERGIMNYIRDTQFSPKEWATPGRVRETQCKLPPLQGKTIADVFEALIGA 1127

Query: 126  LYLDGGIEVAGT 137
             Y+ GG+E A  
Sbjct: 1128 HYIHGGVEAAQA 1139


>gi|213405195|ref|XP_002173369.1| double-strand-specific pac1 ribonuclease [Schizosaccharomyces
           japonicus yFS275]
 gi|212001416|gb|EEB07076.1| double-strand-specific pac1 ribonuclease [Schizosaccharomyces
           japonicus yFS275]
          Length = 325

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 57/217 (26%), Positives = 95/217 (43%), Gaps = 16/217 (7%)

Query: 18  ANRSLLEKALTHSSISHSY-----------QESYERLEFLGDRILGLLISTLLFNHFDSA 66
             + L E+  TH S ++              +  ERLEFLGD +L  +++ +++  F +A
Sbjct: 103 RQKKLEEQVFTHKSRANELFPHCLDARKLLSKHNERLEFLGDDVLEGIVTKIIYERFPNA 162

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS    +LV  +  S+ A    L   +++     K      T + ADV E+ + AL
Sbjct: 163 NEGELSKLRATLVGNDMVSKFATLYGLHEKLQLGLCGEKSQLRKCTKVVADVFEAYLGAL 222

Query: 127 YLDGGIEVAGTFVDKYWKQRALK---SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           YLD  I+ A  +V +  +   ++        + AK ELQ     K G   EY+   +   
Sbjct: 223 YLDNQIDAAFEWVKQLIEPELVRFKMEPPINKLAKAELQRRI-GKAGGKVEYRCIEKKM- 280

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                + V   I+G   + G+  + + A   AA + L
Sbjct: 281 GQREEYKVACIINGSEVSWGVGSNIKLAGTRAAMKAL 317


>gi|307448396|pdb|3O2R|B Chain B, Structural Flexibility In Region Involved In Dimer
           Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc)
           From Campylobacter Jejuni
 gi|307448398|pdb|3O2R|D Chain D, Structural Flexibility In Region Involved In Dimer
           Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc)
           From Campylobacter Jejuni
          Length = 144

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 47/141 (33%), Positives = 78/141 (55%), Gaps = 1/141 (0%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               LE+ + Y F +++LL  ALTH S       + ERLEFLGD +L L++   LF+ F 
Sbjct: 1   NIEKLEQSLTYEFKDKNLLIHALTHKSFXKK-SYNNERLEFLGDAVLDLVVGEYLFHKFA 59

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
              EG+LS    +LV+ ++ +++A  L+L  FI +S     +      SI +D +E++I 
Sbjct: 60  KDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALEAIIG 119

Query: 125 ALYLDGGIEVAGTFVDKYWKQ 145
           A++L+ G E A T   +  ++
Sbjct: 120 AIHLEAGFEFAKTIALRLIEK 140


>gi|170076696|ref|YP_001733334.1| ribonuclease III [Synechococcus sp. PCC 7002]
 gi|169884365|gb|ACA98078.1| ribonuclease III [Synechococcus sp. PCC 7002]
          Length = 239

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 57/212 (26%), Positives = 102/212 (48%), Gaps = 12/212 (5%)

Query: 5   RYSTLEKRIG---YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
               L  R+G   Y      LL+ ALTH SIS    ++YE+LEF+GD ++ L  S +L+ 
Sbjct: 9   SLRRLIDRLGLPDYHGMRWDLLDLALTHPSISPD--KNYEQLEFIGDAVVRLAASEVLYA 66

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +   GE +   + LVS  T ++ A   +L  ++           +   S+ AD  E+
Sbjct: 67  EYPAEPVGEFAAIRSILVSDRTLAEFAHRYNLKKYLSYHG---HYHGAGEISLLADAFEA 123

Query: 122 LIAALYL-DGGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++ AL+L    + +   ++D++ + +A  +K    R + K  LQ W+  ++   P Y+VT
Sbjct: 124 MLGALFLTTNDLSLVHPWLDEHLRHKAAEIKQDPARENYKDALQTWSQGEYQKLPTYQVT 183

Query: 179 FRSGPDH-DPRFTVVVEISGLAPAQGMDCSKR 209
                 H + RF   V++      +G+  SK+
Sbjct: 184 ENPEFRHEEERFLAEVKLGDTLLGKGVGRSKK 215


>gi|316976669|gb|EFV59916.1| putative RNase3 domain protein [Trichinella spiralis]
          Length = 1460

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 5/172 (2%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHS--SISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           + +  E+RIG  F +  LL +A T      +       +RLEFLGD +L L+ +  L+ H
Sbjct: 783 KLTEFEQRIGVRFNHIRLLARAFTRKCVGYNFLTLGHNQRLEFLGDSVLQLVTTEYLYKH 842

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-LRKDVCSFMTSIQADVVES 121
           F   +EG LS+  +SLV+  T + +  +L++ +FI      LR +        +AD+VE+
Sbjct: 843 FPDHQEGHLSLLRSSLVNNRTQAVICDDLEIPNFILQPPAFLRNEPQELRMKDKADLVEA 902

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGV 171
            + AL++D  ++    FV   +  R  +  + +R  D K++LQ+   A    
Sbjct: 903 FLGALFVDHSLDYCAAFVRHCFLPRLKQFIEEQRWCDPKSQLQQCCLALRNP 954



 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 79/249 (31%), Gaps = 77/249 (30%)

Query: 1   MSALRYST----LEKRIGYAFANRSLLEKALTHSSI------------------------ 32
           ++ +R+       ++RI Y+F   SLLE A TH S                         
Sbjct: 541 LNHIRFHRCLRVFQQRIDYSFRKPSLLELAFTHPSYRADSGTNADHVRNVLNNCGLRQLE 600

Query: 33  --SHSYQESYER-----------------------------LEFLGDRILGLLISTLLFN 61
             S        R                             LE+LGD ++  L +  LF 
Sbjct: 601 FGSKRTNPWNSRKRGVSCLVNVMSRMGEKKSRASSTVNNERLEYLGDAVIEFLTTIHLFY 660

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F   +EG L+     +V     S++A ++ L  F+  +          M    A+  E+
Sbjct: 661 IFPDLEEGALAPYRTLMVQNSHLSKLAAKMGLDEFMLFAHGPDLCFEEDMRHAMANAFEA 720

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV--TPEYKVTF 179
           ++ A+YLDGG+ VA     ++                     W  A   V   P      
Sbjct: 721 ILGAVYLDGGVHVADRVFGRFLFPPD----------------WNQALHWVWFHPPRHPLQ 764

Query: 180 RSGPDHDPR 188
           +  PD D  
Sbjct: 765 QEYPDGDRH 773


>gi|229495315|ref|ZP_04389050.1| ribonuclease III [Porphyromonas endodontalis ATCC 35406]
 gi|229317758|gb|EEN83656.1| ribonuclease III [Porphyromonas endodontalis ATCC 35406]
          Length = 298

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 56/239 (23%), Positives = 101/239 (42%), Gaps = 33/239 (13%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--------------ESYERLEFLGDRI 50
            + TLE+ +G+A  ++     AL   S + S                ++ +RLEFLGD I
Sbjct: 24  DWKTLEQILGFAIRDKEYYRLALIDPSTTASGNGGKRAAGRSKMTSNDNNDRLEFLGDSI 83

Query: 51  LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110
           +G ++S  L+  + ++  G LS +   +VS +    +A+ + +   I+ SS     +   
Sbjct: 84  IGAVVSETLYRTYPNSPVGALSEQKAKIVSRKIGDTIAKRMGIDGLIQHSS--ENFLAKD 141

Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDK----YWKQRALKSGKFRRDAKTELQEWAH 166
                 + +E+++ A+YLD G + A  FV+      +++          + K +L EW  
Sbjct: 142 AP---GNALEAIVGAIYLDRGFDFAHQFVNHKMLGIYREIRETQPDLGTNFKNKLIEWGL 198

Query: 167 AKFGVTPEYKVTFRSGPDHDP----RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            K   T E+ +       H P     F   V I           +K+ +EQ AA   L+
Sbjct: 199 -KHKCTVEFCLI-----AHAPGPRGYFVSQVFIDNQPMGHSKGSTKKGSEQGAAKLALE 251


>gi|156553056|ref|XP_001605287.1| PREDICTED: similar to dicer-1 [Nasonia vitripennis]
          Length = 1917

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 59/247 (23%), Positives = 95/247 (38%), Gaps = 48/247 (19%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y +LE+ IGY F NRS L +A TH+S   +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1657 YDSLERSIGYTFRNRSYLLQAFTHASYQPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1716

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111
                G L+   ++LV+    + +A       + R +S  L   +  F+            
Sbjct: 1717 QHSPGALTDLRSALVNNTIFASLAVRCGFHKYFRHLSPGLNTVIDRFVRIQEENGHSISE 1776

Query: 112  ---------------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS 150
                                      DV ESL  A+YLD  + +   +   +   ++   
Sbjct: 1777 EYYLIGEREFEEAEEAEDVEVPKALGDVFESLAGAIYLDSNMSLDAVWAVYFEIMKSEIE 1836

Query: 151  GKFRRDAKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205
                   K+ ++E        AKFG             D   R  V V++ G    +G+ 
Sbjct: 1837 QFSANVPKSPIRELLELEPETAKFGKP-------EKLADG-RRVRVTVDVFGKGSFKGIG 1888

Query: 206  CSKRAAE 212
             + R A+
Sbjct: 1889 RNYRIAK 1895



 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 73/170 (42%), Gaps = 23/170 (13%)

Query: 14   GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
            G++  + SL+ +ALT S+ +     + ERLE +GD  L   I+T LF  +++  EG+LS 
Sbjct: 1370 GHSGPSPSLILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLFCTYNNIHEGKLSH 1427

Query: 74   RFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIA----- 124
              +  VS     ++ R+  L   +  S     D     C ++     ++ ++LI      
Sbjct: 1428 LRSKQVSNLNLYRLGRQKMLGESMIASKFEPHDNWLPPCYYVPK---ELEQALIESGVPS 1484

Query: 125  ALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT 172
            A++    I     F  ++   ++   K        K+   E + ++ G  
Sbjct: 1485 AMWNQADIPPFSRFSEINDLVRETEHKLEII----KS---ELSQSEHGAL 1527


>gi|198421916|ref|XP_002122382.1| PREDICTED: similar to rCG20888 [Ciona intestinalis]
          Length = 2053

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 59/269 (21%), Positives = 97/269 (36%), Gaps = 63/269 (23%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             S  E++I Y F N++ L +A TH+S   ++  + Y+RLEFLGD +L  LI+  LFN   
Sbjct: 1787 LSGFERKINYTFKNKAYLLQAFTHASYYYNTVTDCYQRLEFLGDAVLDFLITRHLFNDER 1846

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF-------------- 110
                G L+   ++LV+    + +A   D   + +  S     +                 
Sbjct: 1847 HHSPGALTDLRSALVNNTIFASLAVHYDFHKYFKSISPELHHIIEDFVMYQQKQEDAQGM 1906

Query: 111  --------------------------------MTSIQADVVESLIAALYLDGGIEVAGTF 138
                                            +     D+ ES+  A+Y+D G++++  +
Sbjct: 1907 DAHLMRDYDRVEIVAPSSLEKDEEEGENEDVEVPKALGDIFESVAGAIYMDSGMDLSSVW 1966

Query: 139  -VDKYWKQRALK--SGKFRRDAKTELQEW---AHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
             V        ++  S    R    EL E              Y          D +  V 
Sbjct: 1967 KVYSVMMLPLIEKFSACVPRSPVRELLEMEPETAKFSCAEKRY----------DGKVRVT 2016

Query: 193  VEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            VEI G    +G+  S R A+  AA   L+
Sbjct: 2017 VEIIGKGRFKGVGRSYRIAKSAAARRALR 2045



 Score = 67.4 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
              L+ +ALT S+ S  +  + ERLE LGD  L   ++  L+  +  + EG+LS   +  V
Sbjct: 1458 PGLILQALTLSNASDGF--NLERLEMLGDSFLKHAVTVYLYCTYPESHEGKLSYMRSKKV 1515

Query: 80   SAETCSQVARELDL 93
            S     ++ ++  L
Sbjct: 1516 SNYNLYRIGKQFGL 1529


>gi|57236094|gb|AAW48724.1| dicer-1 [Aedes aegypti]
          Length = 2192

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 61/262 (23%), Positives = 98/262 (37%), Gaps = 53/262 (20%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            YS  E  +GY   +RS L +A+TH+S   +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1937 YSAFEDSLGYH-HSRSYLLQAMTHASYCPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------ 111
                G L+   ++LV+    + +A   D   + R +S  L   +  F+            
Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHDFHKYFRHLSPGLNDVIDRFVRIQQDNGHIISE 2055

Query: 112  ------------------TSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSG 151
                                   DV ES+  A++LD  +  +               +  
Sbjct: 2056 EYYLISEDECDEAEDVEVPKALGDVFESVAGAIFLDSNMSLDAVWKVYRSMMGPEIEQFS 2115

Query: 152  KFRRDAKTELQEWAH-----AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206
                  K+ ++E        AKFG             D   R  V VE+ G    +G+  
Sbjct: 2116 NSV--PKSPIRELLELEPETAKFGKP-------EKLADG-RRVRVTVEVFGKGTFRGIGR 2165

Query: 207  SKRAAEQVAAAEV---LKREGI 225
            + R A+  AA      LK+ G+
Sbjct: 2166 NYRIAKCTAAKCALRQLKKMGL 2187



 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 9/110 (8%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+LS   +  V
Sbjct: 1654 PSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYCTYENVHEGKLSHLRSKQV 1711

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125
            S     ++ R   L   +  +     D     C ++     ++ ++LI A
Sbjct: 1712 SNLNLYRLGRRKVLGESMIATKFEPHDNWLPPCYYVPK---ELEQALIDA 1758


>gi|224109196|ref|XP_002315119.1| dicer-like protein [Populus trichocarpa]
 gi|222864159|gb|EEF01290.1| dicer-like protein [Populus trichocarpa]
          Length = 1408

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 63/243 (25%), Positives = 101/243 (41%), Gaps = 29/243 (11%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNH 62
            +    LE  + Y+F + SLL +ALTH S         Y+RLEFLGD +L  LI+  L+  
Sbjct: 1153 VNVRYLESLLNYSFRDPSLLVEALTHGSYMLPEIPSCYQRLEFLGDAVLDYLITMHLYKE 1212

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSF----------- 110
            +     G L+   ++ V+ +  +Q A + DL   I   S DL K +              
Sbjct: 1213 YPGMSPGLLTDLRSASVNNDCYAQSAVKGDLHKHILHTSQDLHKHIVETAEIFQKSSLGS 1272

Query: 111  ---------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSGKFRRDAKT 159
                        +  DV+ESL  A+ +D G   E+    +    +   +     R     
Sbjct: 1273 TFGWESETSFPKVLGDVIESLAGAILVDSGYNKEIVFQSIRPLLEP-LITPATVRLHPAR 1331

Query: 160  ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAE 218
            EL E    +     +YK +  S    +   T+VV  +G+          K+ A+++A+ E
Sbjct: 1332 ELSELCQKQHF---DYKKSVVSYNGRNASITIVVGANGVTFKHTATAADKKTAKKLASKE 1388

Query: 219  VLK 221
            VLK
Sbjct: 1389 VLK 1391



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 56/163 (34%), Gaps = 34/163 (20%)

Query: 41   ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-- 98
            E LE LGD  L    S  LF  + +  EG LS++   ++S     +   +  L  FIR  
Sbjct: 1001 ESLETLGDSFLKYAASQQLFKLYQNHHEGLLSMKKEKIISNAALCRRGCDHKLPGFIRNE 1060

Query: 99   -----------------VSSDLRKDVCSF---------MTSIQADVVESLIAALYLDGGI 132
                             + S+     C            +   ADVVE+LI A YL  G 
Sbjct: 1061 SFDPKLWMIPGDKCGSDLLSEEPLSECRKIYVRGRRKVKSKTVADVVEALIGA-YLSTGG 1119

Query: 133  EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
            EV   F   +     +K        +   Q    A+  V   Y
Sbjct: 1120 EVLALFFMDWIG---IKVDFMIVPYERHFQ--LQAEKFVNVRY 1157


>gi|218283082|ref|ZP_03489177.1| hypothetical protein EUBIFOR_01763 [Eubacterium biforme DSM 3989]
 gi|218216151|gb|EEC89689.1| hypothetical protein EUBIFOR_01763 [Eubacterium biforme DSM 3989]
          Length = 198

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 41/145 (28%), Positives = 62/145 (42%), Gaps = 1/145 (0%)

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
              +EG+++      V   T   + R+L    F+R+     K       SI AD  E+ I
Sbjct: 36  PKMREGQMTTLRAQTVCESTLYVLNRQLGWYEFLRLGVGEEKTGGRNRESILADQFEACI 95

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
            A+Y+D G  V    + KY K    +   +   D KT LQE   A    T +YK+    G
Sbjct: 96  GAIYIDQGYHVCDEILTKYMKPVFKQEKSEAVTDYKTHLQEVIQADSRKTIQYKLLEEKG 155

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCS 207
           P + P FT+ V +  +   QG   +
Sbjct: 156 PSNAPTFTMGVYLDDILLGQGTSST 180


>gi|71893762|ref|YP_279208.1| ribonuclease III [Mycoplasma hyopneumoniae J]
 gi|72080732|ref|YP_287790.1| ribonuclease III [Mycoplasma hyopneumoniae 7448]
 gi|71851889|gb|AAZ44497.1| ribonuclease III [Mycoplasma hyopneumoniae J]
 gi|71913856|gb|AAZ53767.1| ribonuclease III [Mycoplasma hyopneumoniae 7448]
          Length = 227

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 50/212 (23%), Positives = 89/212 (41%), Gaps = 17/212 (8%)

Query: 17  FANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
             ++ +  +ALTH S +  +  +  YE LEFLGD ++   +S +++++F    EG  +  
Sbjct: 18  PNSKQIYIQALTHKSYNFINPDKPHYEMLEFLGDSVINYAVSKVIYDNF-YKNEGNSTQI 76

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
            + L S  + +   +++ L +++ +              ++AD+ ES  AA+ LD G E 
Sbjct: 77  RSLLTSTSSLANATKKVGLMNYVLLGRGA--SEIRENNKLKADIFESFCAAILLDQGFEK 134

Query: 135 AGTFVDKY-WKQRALKSGKFRRDAKTELQEWAHA-KFGVTPEY---KVTFRSGPDHDPRF 189
              F+ +Y +K     + K  +D K+  QE            Y   K+        D  F
Sbjct: 135 LNEFLSEYLYKDVNFDTEKQYKDPKSIFQEKIQTFSTSNKIHYLHTKLV-------DGTF 187

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V +         G   S + AE  AA   L 
Sbjct: 188 RVDLIWEKKKYGIGYGRSIKEAEFAAATNALN 219


>gi|318042834|ref|ZP_07974790.1| putative ribonuclease III [Synechococcus sp. CB0101]
          Length = 242

 Score =  151 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 60/188 (31%), Positives = 91/188 (48%), Gaps = 7/188 (3%)

Query: 24  EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83
           ++ALTH+S   +   ++E+LEFLGD +L L  S  L  H      GE S     LVS   
Sbjct: 36  DEALTHTSAGLAI--NHEQLEFLGDAVLRLAASEYLEQHHPELSVGERSALRAQLVSDRW 93

Query: 84  CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIEVAGTFVDKY 142
            ++V   + ++  +R+      D  +  T ++A+  E+LI ALY   G +     ++   
Sbjct: 94  LAEVGEAIGISDALRIGPTAGGDATALST-LRAEATEALIGALYRAFGSLAPVHQWLTPS 152

Query: 143 WK--QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISGLA 199
           W+   RA+ S   R + K+ LQEW+ AK    P Y+   RS    DP RF   V + G  
Sbjct: 153 WERTSRAVLSDPHRGNCKSALQEWSQAKALGLPTYRTKERSKRHGDPQRFHCHVGLEGWI 212

Query: 200 PAQGMDCS 207
            A+G   S
Sbjct: 213 SAEGWGGS 220


>gi|17231599|ref|NP_488147.1| ribonuclease III [Nostoc sp. PCC 7120]
 gi|17133242|dbj|BAB75806.1| ribonuclease III [Nostoc sp. PCC 7120]
          Length = 202

 Score =  151 bits (383), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 51/175 (29%), Positives = 87/175 (49%), Gaps = 5/175 (2%)

Query: 39  SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
           +YE+LEF+GD ++ L  + +L+  +     G+ +   + LVS    +Q+ARE  L   + 
Sbjct: 6   NYEQLEFVGDAVVRLAAAVMLWETYPDCPVGDFAAIRSVLVSDRILAQLAREYGLELHLL 65

Query: 99  VSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIEVAGTFVDKYWKQRA--LKSGKFRR 155
           V+     D      S  AD  E+++ ALYL    +E+   ++D +++Q A  ++    R 
Sbjct: 66  VAGSATSDKIGQ-ESRLADAFEAVLGALYLSTSNLELIRPWLDHHFRQLAAEIRLDPARL 124

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISGLAPAQGMDCSKR 209
           + K  LQEW  A+F V PEY+V   +  +    RF   V + G    +G   S +
Sbjct: 125 NYKAALQEWTQAQFKVLPEYRVVEINQANRTQERFAAEVWLHGNKLGEGKGRSIK 179


>gi|298207213|ref|YP_003715392.1| putative ribonuclease III [Croceibacter atlanticus HTCC2559]
 gi|83849849|gb|EAP87717.1| putative ribonuclease III [Croceibacter atlanticus HTCC2559]
          Length = 247

 Score =  151 bits (382), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 50/208 (24%), Positives = 92/208 (44%), Gaps = 12/208 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLLFN 61
           +S ++  +G+   N    +KA TH S++        ++YERLEFLGD +L  +I+  LF+
Sbjct: 19  FSAIQNLVGFKPTNLKPYKKAFTHRSLNEVDELGNAQNYERLEFLGDAMLSAIIAAHLFS 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
                 EG L+     +VS +  +++ ++LDL S ++ +    +       +I  ++ E+
Sbjct: 79  AVPGGNEGYLTKMRAKVVSRKHLNELGKDLDLVSLVKTNIPKTQFGA----NIHGNLFEA 134

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFGVTPEYKVT 178
           LI A+YLD G +    F+ +   +  +   +        K+ L E+          Y V 
Sbjct: 135 LIGAIYLDKGYKSCKRFIHERVIEPYVDIEQLENKVISYKSLLIEYCQKTKKE-FHYDVY 193

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDC 206
             +G      F V + I     A+    
Sbjct: 194 EDTGVGEMKHFAVKLRIDKKVVAKARAT 221


>gi|301770225|ref|XP_002920522.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer-like
            [Ailuropoda melanoleuca]
          Length = 1931

 Score =  151 bits (382), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 59/260 (22%), Positives = 99/260 (38%), Gaps = 51/260 (19%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1667 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1726

Query: 65   SAKEGELSVRFNSLVSAETCSQVAR--------ELDLASFIR-----------------V 99
                G L+   ++LV+    + +A           D   + +                 +
Sbjct: 1727 QHSPGVLTDLRSALVNNTIFASLAVXXXXXXXXXXDYHKYFKAVSPELFHVIDDFVQFQL 1786

Query: 100  SSDLRKDVCSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKY 142
              +  + + S                +     D+ ESL  A+Y+D G+  E+        
Sbjct: 1787 EKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPM 1846

Query: 143  WKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201
             +    K S    R    EL E        +P  +        +D +  V VE+ G    
Sbjct: 1847 MRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKF 1899

Query: 202  QGMDCSKRAAEQVAAAEVLK 221
            +G+  S R A+  AA   L+
Sbjct: 1900 KGVGRSYRIAKSAAARRALR 1919



 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 1294 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1351

Query: 79   VSAETCSQVARELDLASFIRVS 100
            VS     ++ ++  L S + VS
Sbjct: 1352 VSNCNLYRLGKKKGLPSRMVVS 1373


>gi|242033791|ref|XP_002464290.1| hypothetical protein SORBIDRAFT_01g015670 [Sorghum bicolor]
 gi|241918144|gb|EER91288.1| hypothetical protein SORBIDRAFT_01g015670 [Sorghum bicolor]
          Length = 1385

 Score =  151 bits (382), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 56/246 (22%), Positives = 95/246 (38%), Gaps = 32/246 (13%)

Query: 2    SALRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLF 60
            + +   +LE  + Y F++ SLL +ALTH S         Y+RLEFLGD +L  + +   +
Sbjct: 1128 NFINLRSLELMLDYNFSDPSLLLEALTHGSYQIAGTTACYQRLEFLGDAVLDHIFTDYFY 1187

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF---------- 110
            + +       L+   ++ V+    +  A +  L   I  SS       +           
Sbjct: 1188 HQYPECTPELLTDLRSASVNNSCYAHAAVKAGLHKHILHSSSALHKKMADYLDKFEQSFS 1247

Query: 111  -----------MTSIQADVVESLIAALYLDGGIEVAGTFVD-KYWKQRALKSGKFRRDAK 158
                       +  +  DV+ES+  A+Y+D   +    +   K   +          D  
Sbjct: 1248 GPSHGWEAGICLPKVLGDVIESIAGAIYIDTKNDKKVVWRKMKRLLEPLATPDTLEIDPV 1307

Query: 159  TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP---AQGMDCSKRAAEQVA 215
             EL E+   K   + +Y V        D   +V VE+        A     +KR A+++A
Sbjct: 1308 KELHEFCDPK-TCSIKYTVARE-----DRVTSVAVEVQTKGTTYKATRTGLTKRDAKKLA 1361

Query: 216  AAEVLK 221
            A  VLK
Sbjct: 1362 AKSVLK 1367


>gi|307169891|gb|EFN62400.1| Ribonuclease 3 [Camponotus floridanus]
          Length = 1167

 Score =  150 bits (381), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 82/165 (49%), Gaps = 8/165 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  S   ++    S +RLEFLGD +L L++S  L+  
Sbjct: 990  KLTKFEESIGIEFTHIRLLARAFTDRSIGYTNLTLGSNQRLEFLGDTVLQLIVSEYLYKF 1049

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG LS+  +SLV+ +T + V  +L +  +    +          T  +AD++E+ 
Sbjct: 1050 FPEHHEGHLSLLRSSLVNNKTQAVVCDDLGMTQYALYGNP----KAELKTKDRADLLEAF 1105

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA 165
            + ALY+D G++    F D  +  R       +   D K++LQ+  
Sbjct: 1106 LGALYVDKGLKYCHVFCDVCFFPRLQDFIMNQDWNDPKSKLQQCC 1150



 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 6/137 (4%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
           T SSI+H      ERLEFLGD ++  L S  LF+ F   +EG L+    ++V  +  + +
Sbjct: 841 TESSIAH-----NERLEFLGDAVVEFLTSIHLFHMFPDLEEGGLATYRAAIVQNQHLAVL 895

Query: 88  ARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA 147
           A++L L  ++  +          +    A+  E+L+ +L+LDGGIEVA     +   +  
Sbjct: 896 AKKLSLEEYMLYAHGSDLCHDLELRHAMANCFEALMGSLFLDGGIEVADRVFGETLFKSE 955

Query: 148 LKSGKFRRDAKT-ELQE 163
               K   +     LQE
Sbjct: 956 EDLAKVWVNYPRHPLQE 972


>gi|328905041|gb|AEB54796.1| dicer 2 [Litopenaeus vannamei]
          Length = 1502

 Score =  150 bits (381), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 64/248 (25%), Positives = 107/248 (43%), Gaps = 38/248 (15%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNHFD 64
               LEK+IGY F +RS + +A+THSS  ++   + Y+RLEFLGD +L  L++  +F  F 
Sbjct: 1239 LDRLEKKIGYTFRDRSFIVQAVTHSSYVNNQVTDCYQRLEFLGDAVLDYLVTCHIFCRFT 1298

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSF------------- 110
                G+LS   +  V  +T  + A +  L   +  ++  L   +  F             
Sbjct: 1299 DYSPGQLSDLRSYFVKNDTLGRAAAKGKLHQHLLHLNPKLEASIDKFLSILHQDPLGEEL 1358

Query: 111  -------------MTSIQADVVESLIAALYLDG--GIEVAGTFVDKYWKQRALKSGK-FR 154
                         +     D+VE++I A+YLD    ++VA   +++        S +  +
Sbjct: 1359 NTEDDVQDCEDVEIPKALGDMVEAIIGAVYLDSNRSLKVAWQVIERILGDLLNTSIQTIQ 1418

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
             +   +L E       V  E +V F  G  D   + T VV++ G         + R A++
Sbjct: 1419 LNPIRQLLE------EVPGEKQVEFVKGEDDGSEKSTYVVKVKGFGTFTASGKNYRVAKK 1472

Query: 214  VAAAEVLK 221
              AA  LK
Sbjct: 1473 KVAAIALK 1480



 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 32/72 (44%)

Query: 26   ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85
            A T    S   + + ERLE LGD  L  +    LF   +S  EG LS     LV  +T  
Sbjct: 1015 AFTLKEASEDKEFNLERLELLGDSFLKFVTGEALFLRDESYHEGRLSQSRGKLVCNKTLF 1074

Query: 86   QVARELDLASFI 97
            ++A +  L   I
Sbjct: 1075 RLACQKGLEGKI 1086


>gi|190344934|gb|EDK36728.2| hypothetical protein PGUG_00826 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 525

 Score =  150 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 53/230 (23%), Positives = 95/230 (41%), Gaps = 21/230 (9%)

Query: 16  AFANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSA 66
              +  L  +   H S ++S              ERLEFLGD IL  +++ ++F  F +A
Sbjct: 170 TIKDPELAARVFVHKSTTNSKSYLAMSELINSHNERLEFLGDSILNNVVTLIIFEQFPTA 229

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS    SL++    ++ +        ++ + +   D+ +    I AD+ E+ I AL
Sbjct: 230 SEGELSRIRASLINNAFLTEFSLAYGFDKKLKSNINEE-DLRNGKQKIYADLFEAYIGAL 288

Query: 127 YLDGGIEVA--GTFVDKYWKQR-------ALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
            +D   ++     ++ K  K +            +  +DAK EL         + P+Y+V
Sbjct: 289 IIDRKYDITEIKAWLKKLMKDKLGSIARDMKGIKEVNKDAKAELYSLI-GTAALHPQYEV 347

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
               G   + +F +   ++G     G   S + A   AA   L  + + T
Sbjct: 348 I-VEGDGSEKQFEIACTMNGEILGVGRAPSHKEAGLRAAMHALTNKPVLT 396



 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 13/94 (13%)

Query: 137 TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV--TPEYKVTFRSGPDHDPRFTVVVE 194
             VD+ +   +  S     DA+ +L        G    P+Y+V    G      F   + 
Sbjct: 431 DIVDRQFPLVSDGSEVVDADARNQLYAIVTKNLGPDEIPQYQVEEIDG-----SFKARLS 485

Query: 195 ISGLAPAQGMDCSKRAAEQVAA------AEVLKR 222
           I G   +  +D SK+ A    A         L+R
Sbjct: 486 IRGRTLSTAVDVSKKKASNRCATLLLRNRAALER 519


>gi|312601347|gb|ADQ90602.1| Ribonuclease III [Mycoplasma hyopneumoniae 168]
          Length = 227

 Score =  150 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 50/209 (23%), Positives = 89/209 (42%), Gaps = 11/209 (5%)

Query: 17  FANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
             ++ +  +ALTH S +  +  +  YE LEFLGD ++   +S +++++F    EG  +  
Sbjct: 18  PNSKQIYIQALTHKSYNFINPDKPHYEMLEFLGDSVINYAVSKVIYDNF-YKNEGNSTQI 76

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
            + L S  + +   +++ L +++ +              ++AD+ ES  AA+ LD G E 
Sbjct: 77  RSLLTSTSSLANATKKVGLMNYVLLGRGA--SEIRENNKLKADIFESFCAAILLDQGFEK 134

Query: 135 AGTFVDKY-WKQRALKSGKFRRDAKTELQEWAHA-KFGVTPEYKVTFRSGPDHDPRFTVV 192
              F+ +Y +K     + K  +D K+  QE            Y  T  +    D  F V 
Sbjct: 135 LNEFLSEYLYKDVNFDTEKQYKDPKSIFQEKIQTFSTSNKIHYLHTKLA----DGTFRVD 190

Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +         G   S + AE  AA   L 
Sbjct: 191 LIWEKKKYGIGYGRSIKEAEFAAATNALN 219


>gi|256087296|ref|XP_002579808.1| dicer-1 [Schistosoma mansoni]
 gi|238665295|emb|CAZ36047.1| dicer-1, putative [Schistosoma mansoni]
          Length = 2174

 Score =  150 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 59/268 (22%), Positives = 99/268 (36%), Gaps = 58/268 (21%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI--------SHSYQE-----------SYERLEF 45
            R+  LE  + Y F + SLL +A TH S         S++  +            Y+RLEF
Sbjct: 1890 RFDELESSLNYTFKDPSLLIQAFTHPSYHQLRVLSTSNNLSDQSNLMFSTDLDCYQRLEF 1949

Query: 46   LGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD--- 102
            LGD +L  +I+  L+        G L+   ++LV+    + +A  + L  + R SS    
Sbjct: 1950 LGDAVLDYVITRFLYEDSKQHSPGVLTDLRSALVNNNIFAALAVRIGLHKYFRASSPQLL 2009

Query: 103  ------LRKDVCSFM--------------------TSIQADVVESLIAALYLDGGI--EV 134
                  +RK   +                          +D+ ESL  A++LD     + 
Sbjct: 2010 HTIDVFVRKSNNANNTIPTNTGHLTTNRLSDDVEIPKALSDIFESLAGAIFLDSNFSLDT 2069

Query: 135  AGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
                     K+R  + +    +    +L E         PE     R+    D R +V  
Sbjct: 2070 VWQIFYPIMKERIERYTACIPKSPVRQLLEL-------EPEGTKFERARRMVDGRISVCA 2122

Query: 194  EISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             + G     G+  + R A+ +AA   L+
Sbjct: 2123 HVLGKGRFYGVGRNYRLAKSLAAKRALR 2150



 Score = 57.4 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 25   KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
            +ALT  S S+ +  + ER+E +GD  L  +++  L+  +  A EG+LS   + +V     
Sbjct: 1639 QALT-MSCSNDFI-NLERMETIGDSFLKFVVTVHLYLTYPEAHEGKLSHLRSRIVCNSNL 1696

Query: 85   SQVARELDLAS 95
             ++ +  DL +
Sbjct: 1697 YRLGKAKDLQN 1707


>gi|224101241|ref|XP_002312197.1| dicer-like protein [Populus trichocarpa]
 gi|222852017|gb|EEE89564.1| dicer-like protein [Populus trichocarpa]
          Length = 1468

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 64/247 (25%), Positives = 103/247 (41%), Gaps = 33/247 (13%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNH 62
            +    LE  + Y+F + SLL +ALTH S         Y+RLEFLGD +L  LI+  ++  
Sbjct: 1214 VNVRYLESLLNYSFNDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITLHMYKE 1273

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFMTSI------- 114
            +     G L+   ++ V+ +  +  A ++ L   I   S DL K + + +  I       
Sbjct: 1274 YPGMSPGLLTDLRSASVNNDCYALSAVKVGLDRHILHASHDLHKHIVATVKKIQEFSLES 1333

Query: 115  -------------QADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSGKFRRDAKT 159
                           DV+ESL  A+ +D G   EV    +    +   +     R     
Sbjct: 1334 TFGWESETAFPKVLGDVIESLAGAILVDSGYNKEVVFESIRPLLEP-LITPETLRLQPVR 1392

Query: 160  ELQEWAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAA 216
            EL E    +     +YK  +  R+G   +   T+ VE +GL          K  A+++A+
Sbjct: 1393 ELNELCQRQHF---DYKKPIVSRNGR--NASVTIEVEANGLIFKHTATVADKTTAKKLAS 1447

Query: 217  AEVLKRE 223
             EVLK  
Sbjct: 1448 KEVLKAL 1454



 Score = 55.9 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 43/181 (23%), Positives = 64/181 (35%), Gaps = 40/181 (22%)

Query: 25   KALTHSSISHSYQESY--ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
            +A+T    ++  QE++  E LE LGD  L    S  LF  + +  EG LS + + ++S  
Sbjct: 1048 EAIT----TNKCQENFNLESLETLGDSFLKYAASQQLFKIYQNHHEGLLSFKKDKIISNA 1103

Query: 83   TCSQVARELDLASFIR---------------VSSD----LRKDVCSF---------MTSI 114
               +      L  FIR               + SD                      +  
Sbjct: 1104 ALCRRGCNHKLQGFIRNESFDPKLWIIPGGKLGSDFLSEEPLSKGRKIYIRGRRKVKSKT 1163

Query: 115  QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174
             ADVVE+LI A YL  G EV       +     +K        +  +Q    A+  V   
Sbjct: 1164 IADVVEALIGA-YLSTGGEVTALLFMDWIG---IKVDFMNTPYERHIQ--LQAEKFVNVR 1217

Query: 175  Y 175
            Y
Sbjct: 1218 Y 1218


>gi|283131646|dbj|BAI63215.1| Dicer [Hemicentrotus pulcherrimus]
          Length = 1816

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 57/258 (22%), Positives = 103/258 (39%), Gaps = 49/258 (18%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y   EK I Y F +R+ L +A THSS   +S  + Y+RLEFLGD +L  LI+  L++H  
Sbjct: 1562 YDGFEKTINYRFKDRAYLLQAFTHSSYHRNSITDCYQRLEFLGDALLDYLITRHLYDHHT 1621

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-------------------------- 98
            +   G L+   ++LV+    + +A + +   + +                          
Sbjct: 1622 NLSPGALTDLRSALVNNTIFASLAVKFNFHKYFKAYTANMFQVIDNFVTFVDAKNEALGM 1681

Query: 99   --------VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALK 149
                    +  +  +     +     D+ ES+  A+YLD G+ +   + V     ++ ++
Sbjct: 1682 DSQLKYSEMDGEQEESEDIEVPKALGDIFESVAGAIYLDSGMSLNAVWKVYYPMMKQQIE 1741

Query: 150  --SGKFRRDAKTELQEW--AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205
              +         EL E     A+FG  PE  +  ++         V V + G    +G+ 
Sbjct: 1742 QYASDLPISPVRELLEMEPETARFGP-PEKTIDGKT--------RVTVNVVGKGQFKGIG 1792

Query: 206  CSKRAAEQVAAAEVLKRE 223
             +   A+  AA   L+  
Sbjct: 1793 RNYHIAKATAARFALRHL 1810



 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 2/81 (2%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             +++ ++LT S+ S  +  + ERLE LGD  L   ++  L+  +    EG+LS   +  V
Sbjct: 1256 PTIILQSLTMSNSSDGF--NLERLEMLGDSFLKQAVTAYLYCTYPHLDEGKLSFLRSKQV 1313

Query: 80   SAETCSQVARELDLASFIRVS 100
            S      +  +  LA  ++VS
Sbjct: 1314 SNFNLYCLGEKKALAHKMQVS 1334


>gi|255547506|ref|XP_002514810.1| ATP binding protein, putative [Ricinus communis]
 gi|223545861|gb|EEF47364.1| ATP binding protein, putative [Ricinus communis]
          Length = 1388

 Score =  149 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 63/251 (25%), Positives = 105/251 (41%), Gaps = 32/251 (12%)

Query: 1    MSALRY---STLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLIS 56
            M+  +Y     LE  + Y+F +  LL +ALTH S         Y+RLEFLGD +L  LI+
Sbjct: 1135 MNPEKYVNICHLESLLKYSFRDPCLLVEALTHGSYMLPEIPRCYQRLEFLGDSVLDYLIT 1194

Query: 57   TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFM---- 111
              L+  +     G L+   ++ V+ +  +Q A    L  +I   S  L KD+ S +    
Sbjct: 1195 VHLYEKYPGMSPGLLTDMRSASVNNDCYAQSAVREGLHKYILHASQKLHKDIVSTVANCK 1254

Query: 112  ----------------TSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSGKF 153
                              +  DV+ESL  A+++D G   EV    +    +   +     
Sbjct: 1255 EFSSESTFGWESEISFPKVLGDVIESLAGAIFVDSGYNKEVVFNSIRPLLEP-LITPETI 1313

Query: 154  RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS-KRAAE 212
            R     EL E    +     +  V+  +G       TV VE +G+        + ++ A+
Sbjct: 1314 RLHPTRELTELCQKQHFDRRKPVVSRNNGMS---CVTVEVEANGVVFKHTSAAAERKTAK 1370

Query: 213  QVAAAEVLKRE 223
            ++A+ EVL+  
Sbjct: 1371 RLASKEVLRAL 1381



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 55/135 (40%), Gaps = 29/135 (21%)

Query: 41   ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-- 98
            E LE LGD  L   +   LF  + +  EG LS++ + L+S  T  ++  +  +  FIR  
Sbjct: 989  ESLETLGDSFLKYAVGQQLFKTYQNHHEGLLSIKKDKLISNATLCRLGCDSKIPGFIRNE 1048

Query: 99   -----------------------VSSDLRKDVCSFM---TSIQADVVESLIAALYLDGGI 132
                                   +S+  +  +         + ADVVE+LI A YL  G 
Sbjct: 1049 SFDPKNWLIPDEISGCYSLSEEILSNGRKMYIKRRRKLKEKMIADVVEALIGA-YLSTGG 1107

Query: 133  EVAGTFVDKYWKQRA 147
            E+AG     +   +A
Sbjct: 1108 EIAGLLFLDWIGIKA 1122


>gi|168177328|pdb|3C4B|A Chain A, Structure Of Rnaseiiib And Dsrna Binding Domains Of Mouse
           Dicer
          Length = 265

 Score =  149 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 43/252 (17%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           + T EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 15  FETFEKKINYRFKNKAYLLQAFTHASYHYNTITDXYQRLEFLGDAILDYLITKHLYEDPR 74

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSF------------- 110
               G L+   ++LV+    + +A + D   + + VS +L   +  F             
Sbjct: 75  QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEXQGX 134

Query: 111 ------------------MTSIQADVVESLIAALYLDGG--IEVAGTFVDKYWKQRALK- 149
                             +     D+ ESL  A+Y D G  +EV         +    K 
Sbjct: 135 DSELRRSEEDEEKEEDIEVPKAXGDIFESLAGAIYXDSGXSLEVVWQVYYPXXQPLIEKF 194

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 195 SANVPRSPVRELLEXEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 247

Query: 210 AAEQVAAAEVLK 221
            A+  AA   L+
Sbjct: 248 IAKSAAARRALR 259


>gi|6714410|gb|AAF26098.1|AC012328_1 unknown protein [Arabidopsis thaliana]
          Length = 2042

 Score =  149 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 101/243 (41%), Gaps = 34/243 (13%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNH 62
            +    +E  + Y+F ++SLL +ALTH S         Y+RLEFLGD +L  LI+  L++ 
Sbjct: 1801 VNVGYMESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDK 1860

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFM---------- 111
            +     G L+   ++ V+ E  + VA + +L   I   S  L K +   +          
Sbjct: 1861 YPCLSPGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQS 1920

Query: 112  ----------TSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSGKFRRDAKT 159
                        +  DV+ESL  A+++D G   EV    +        +     +     
Sbjct: 1921 TFGWESDISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLG-CMITPETVKLHPVR 1979

Query: 160  ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAE 218
            EL E          +++++     D    FTV V+   ++ A       K+ A+++A  E
Sbjct: 1980 ELTELCQKW-----QFELSKAKDFD---SFTVEVKAKEMSFAHTAKASDKKMAKKLAYKE 2031

Query: 219  VLK 221
            VL 
Sbjct: 2032 VLN 2034



 Score = 44.3 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 51/144 (35%), Gaps = 28/144 (19%)

Query: 41   ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
            E LE LGD  L   +   LF H  +  EG LS + + ++S     Q   +  L  FIR  
Sbjct: 1649 ESLETLGDSFLKYAVCQQLFQHCHTHHEGLLSTKKDGMISNVMLCQFGCQQKLQGFIRDE 1708

Query: 101  SDLRK----------------------------DVCSFMTSIQADVVESLIAALYLDGGI 132
                K                               +      ADVVESLI A   +GG 
Sbjct: 1709 CFEPKGWMVPGQSSAAYSLVNDTLPESRNIYVASRRNLKRKSVADVVESLIGAYLSEGGE 1768

Query: 133  EVAGTFVDKYWKQRALKSGKFRRD 156
              A  F++    +    + K +RD
Sbjct: 1769 LAALMFMNWVGIKVDFTTTKIQRD 1792


>gi|72059370|ref|XP_790894.1| PREDICTED: similar to Dicer protein [Strongylocentrotus purpuratus]
 gi|115954873|ref|XP_001197815.1| PREDICTED: similar to Dicer protein [Strongylocentrotus purpuratus]
          Length = 1850

 Score =  149 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 57/258 (22%), Positives = 103/258 (39%), Gaps = 49/258 (18%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y   EK I Y F +R+ L +A THSS   +S  + Y+RLEFLGD +L  LI+  L++H  
Sbjct: 1596 YDGFEKTINYRFRDRAYLLQAFTHSSYHRNSITDCYQRLEFLGDALLDYLITRHLYDHHT 1655

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-------------------------- 98
            +   G L+   ++LV+    + +A + +   + +                          
Sbjct: 1656 NLSPGALTDLRSALVNNTIFASLAVKFNFHKYFKAYTANMFQVIDNFVTFVDAKNEALGM 1715

Query: 99   --------VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALK 149
                    +  +  +     +     D+ ES+  A+YLD G+ +   + V     ++ ++
Sbjct: 1716 DSQLKYSEMDGEQEESEDIEVPKALGDIFESVAGAIYLDSGMSLNAVWKVYYPMMKQQIE 1775

Query: 150  --SGKFRRDAKTELQEW--AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205
              +         EL E     A+FG  PE  +  ++         V V + G    +G+ 
Sbjct: 1776 QYASDLPISPVRELLEMEPETARFGP-PEKTIDGKT--------RVTVNVVGKGQFKGIG 1826

Query: 206  CSKRAAEQVAAAEVLKRE 223
             +   A+  AA   L+  
Sbjct: 1827 RNYHIAKATAARFALRHL 1844



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 2/81 (2%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             +++ ++LT S+ S  +  + ERLE LGD  L   ++  L+  +    EG+LS   +  V
Sbjct: 1290 PTIILQSLTMSNSSDGF--NLERLEMLGDSFLKQAVTAYLYCTYPHLDEGKLSFLRSKQV 1347

Query: 80   SAETCSQVARELDLASFIRVS 100
            S      +  +  LA  ++VS
Sbjct: 1348 SNFNLYCLGDKKALAHKMQVS 1368


>gi|146423032|ref|XP_001487449.1| hypothetical protein PGUG_00826 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 525

 Score =  149 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 94/230 (40%), Gaps = 21/230 (9%)

Query: 16  AFANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSA 66
              +  L  +   H S ++S              ERLEFLGD IL  +++ ++F  F +A
Sbjct: 170 TIKDPELAARVFVHKSTTNSKSYLAMSELINSHNERLEFLGDSILNNVVTLIIFEQFPTA 229

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS     L++    ++ +        ++ + +   D+ +    I AD+ E+ I AL
Sbjct: 230 SEGELSRIRALLINNAFLTEFSLAYGFDKKLKSNINEE-DLRNGKQKIYADLFEAYIGAL 288

Query: 127 YLDGGIEVA--GTFVDKYWKQR-------ALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
            +D   ++     ++ K  K +            +  +DAK EL         + P+Y+V
Sbjct: 289 IIDRKYDITEIKAWLKKLMKDKLGSIARDMKGIKEVNKDAKAELYSLI-GTAALHPQYEV 347

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
               G   + +F +   ++G     G   S + A   AA   L  + + T
Sbjct: 348 I-VEGDGSEKQFEIACTMNGEILGVGRAPSHKEAGLRAAMHALTNKPVLT 396



 Score = 40.1 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 58/167 (34%), Gaps = 30/167 (17%)

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            S KE  L    ++L +    ++  R       +R ++D    V S    +++  VE+  
Sbjct: 375 PSHKEAGLRAAMHALTNKPVLTKYGR-------LRSNTDRSVSVISSTRRLESPKVEARF 427

Query: 124 AALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV--TPEYKVTFRS 181
             L            VD+ +   +  S     DA+ +L        G    P+Y+V    
Sbjct: 428 NKL----------DIVDRQFPLVSDGSEVVDADARNQLYAIVTKNLGPDEIPQYQVEEID 477

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA------AEVLKR 222
           G      F   + I G   +  +D SK+ A    A         L+R
Sbjct: 478 G-----SFKARLSIRGRTLSTAVDVSKKKALNRCATLLLRNRAALER 519


>gi|86143647|ref|ZP_01062023.1| putative ribonuclease III [Leeuwenhoekiella blandensis MED217]
 gi|85829690|gb|EAQ48152.1| putative ribonuclease III [Leeuwenhoekiella blandensis MED217]
          Length = 248

 Score =  149 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 57/209 (27%), Positives = 98/209 (46%), Gaps = 12/209 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           + T++K IG+   N +  E+A TH S++   ++    +YERLEFLGD +LG +I+  LF+
Sbjct: 19  FVTVKKIIGFKPINITHYEEAFTHRSMALQDKKGNAFNYERLEFLGDAMLGAVIAAYLFD 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
                 EG L+   + +VS E  +++ R+L L   ++ +            +I  ++ E+
Sbjct: 79  EVGKGDEGYLTKMRSKVVSREHLNELGRDLGLLGLVKSAIPKENFGA----NIHGNLFEA 134

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVT 178
           L+ A+Y D G   A  F++K      +   K        K+ L EW   +     ++   
Sbjct: 135 LVGAIYQDRGYRYARKFINKRVIDPYVDIEKLEGRVISYKSLLIEWCQKEKR-LFDFDTY 193

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             SG D    F+V + I G   A+    S
Sbjct: 194 EDSGQDVVRHFSVRLSIDGKQVAKARATS 222


>gi|225460893|ref|XP_002278706.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 364

 Score =  149 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 64/245 (26%), Positives = 103/245 (42%), Gaps = 31/245 (12%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M A     +E+ I Y F N+ LLE+ALTHSS + S   SY+RLEF+GD  LG  +S  +F
Sbjct: 28  MEA-SVEAVERIINYKFRNKKLLEEALTHSSYTDSA--SYQRLEFIGDAALGCALSNYVF 84

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM--------- 111
             + S   G+LS+   + +S E  ++VA  + L  ++R ++    D              
Sbjct: 85  LAYPSLDPGQLSLIRAANISTEKLARVAVRVGLYQYVRHNAAALDDKVREFALAVQEEGD 144

Query: 112 ----------TSIQADVVESLIAALYLDGGIEV-AGTFVDKYWKQRALKSGKFRR--DAK 158
                         AD+VES+ AA+Y+D   ++     + +   +  +     ++     
Sbjct: 145 SVLYGGSVKAPKFLADIVESVAAAIYVDCNFDLQVLWVIFRGLLEPIVTHEALQQQPQPV 204

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E               +R G  +       V + G   A G    K  A+  AA E
Sbjct: 205 TLLYELCQKDGKHVDIKH--WRKGSKN----IASVYVGGKFIASGSSDEKEIAKLNAAKE 258

Query: 219 VLKRE 223
            L++ 
Sbjct: 259 ALQKL 263



 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSK-RAAE 212
           AK +L E+   K    P Y++    GP H+  F   V I    G+   QG    + + AE
Sbjct: 288 AKQKLHEFCSKKKWPKPSYRIEKEVGPAHEKGFLCSVHIETVDGVLVMQGDTKPRVKDAE 347

Query: 213 QVAA 216
             AA
Sbjct: 348 NSAA 351


>gi|325685925|gb|EGD27990.1| ribonuclease III [Lactobacillus delbrueckii subsp. lactis DSM
           20072]
          Length = 154

 Score =  149 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 46/154 (29%), Positives = 67/154 (43%), Gaps = 5/154 (3%)

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
              +++V  E  S+VA +      I +     K       ++  DV E+   AL+LD GI
Sbjct: 1   RLRSNIVRTEGFSKVALDCGFKEEINLGVGEEKAGGRKRKALLEDVFEAFNGALFLDQGI 60

Query: 133 EVAGTFVDKYWKQRALKSG--KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           E    F+ +      + +G     RD KT+LQE       VT EY+V   S     P F 
Sbjct: 61  EAVEKFLRQTVYP-LIAAGYFTPSRDFKTDLQELLQQNGSVTIEYRVLNESQQP--PHFE 117

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           V V + G   A G   +K+ AEQ AA+  L+   
Sbjct: 118 VEVLVDGKKLASGEGRNKKKAEQDAASHALEHLN 151


>gi|320580371|gb|EFW94594.1| ribonuclease III, putative [Pichia angusta DL-1]
          Length = 347

 Score =  149 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 88/225 (39%), Gaps = 20/225 (8%)

Query: 16  AFANRSLLEKALTHSSISHSYQ---------ESYERLEFLGDRILGLLISTLLFNHFDSA 66
              +  +  +  TH S   + +          + ERLEFLGD I+  L++ +LF  + S 
Sbjct: 28  KIEDPVIEARVFTHRSAVSNTKHLSKKEILESNNERLEFLGDSIINNLVTQILFERYPSF 87

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EGELS+  + L+S  +  + + +      + V+             I +DV E+ +  L
Sbjct: 88  DEGELSILRSQLISNSSLGEFSEKYGFPEKLVVNFAKDAAFQKGKHKIYSDVFEAYVGGL 147

Query: 127 YLDGGI---EVAGTFVDKYWKQRA------LKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
           Y+D      +    ++++    R               DAK +L         + P Y +
Sbjct: 148 YVDSNYSNLDTIKKWLEQLITPRLSKLTERFNLKNLNNDAKAQLYALI-GSAALPPRY-I 205

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           T ++G   D  F V   I      +G   + + A   AA + L +
Sbjct: 206 TKQTGNGFDVSFIVQCMIGDEIIGEGEGSNLKQAGLRAAEDALSK 250


>gi|158706456|sp|Q1DKI1|DCL1_COCIM RecName: Full=Dicer-like protein 1; Includes: RecName:
            Full=Endoribonuclease DCL1; Includes: RecName:
            Full=ATP-dependent helicase DCL1
          Length = 1464

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 57/254 (22%), Positives = 101/254 (39%), Gaps = 40/254 (15%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            + ++K++GY F    LL  A TH S   + +    Y+RLEFLGD +L +     +++   
Sbjct: 1188 AQVKKKLGYDFKYPKLLRSAFTHPSYPSAWARVPCYQRLEFLGDALLDMACVEHIYHKHP 1247

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSFMTSI--------- 114
                  L+    ++VS +    VA  L L S +   S+ L+  + +++  I         
Sbjct: 1248 DKDPQWLTEHKMAMVSNKFLGSVAVRLGLHSHLNHFSTSLQSQITNYVEEIEAAELESGD 1307

Query: 115  --------------QADVVESLIAALYLDGGI------EVAGTFVDKYWKQRALKSGKFR 154
                            D+VE+ I A+++D G       E    F+ K+++   +      
Sbjct: 1308 PPDAWTLTSDPPKCLPDMVEAYIGAIFIDSGFSFEVVEEFFQKFLKKHFEDMTIYDTYAN 1367

Query: 155  RDAKTELQEWAHAKFGVTPEY-----KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            +   T L       FG +  Y     +V +  GP    R    V +     A+G+  S R
Sbjct: 1368 KHPTTYLHNRLAIDFGCS-NYCLKAGEVPYVDGPG--TRVLAAVIVHDEVVAEGVASSSR 1424

Query: 210  AAEQVAAAEVLKRE 223
             A+  A+   L + 
Sbjct: 1425 YAKLKASEAALSKL 1438



 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 39/121 (32%), Gaps = 27/121 (22%)

Query: 20   RSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
              L  +ALT        H +          ++YERLEFLGD  L +  S  LF       
Sbjct: 1028 PELALEALTKDSDNTDEHRAQQIHFQRGMGKNYERLEFLGDCFLKMATSISLFAMNPDND 1087

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
            E              T  Q             S    ++  +      ADV E+LI A  
Sbjct: 1088 E------RGWYPGGLTLLQ-----GKGQ----SKGATENKHALADKTIADVCEALIGACC 1132

Query: 128  L 128
            L
Sbjct: 1133 L 1133


>gi|302764440|ref|XP_002965641.1| hypothetical protein SELMODRAFT_84784 [Selaginella moellendorffii]
 gi|300166455|gb|EFJ33061.1| hypothetical protein SELMODRAFT_84784 [Selaginella moellendorffii]
          Length = 524

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 101/248 (40%), Gaps = 32/248 (12%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLL 59
           ++++ +  LE  +GY+F +R+LL +ALTHSS    S    YERLEF+GD +L  L++  +
Sbjct: 190 LNSIDFEGLENTLGYSFRSRNLLAQALTHSSSRQASMVPIYERLEFIGDAVLDHLLTRHI 249

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD------------- 106
           +  +     G L+    + +++E+ ++   +  L + I   S+                 
Sbjct: 250 YFSYKDLHPGRLTDLRCAALNSESFARAMVKHKLHAHILHESNDFHSQIKTYAKHALNME 309

Query: 107 ---------VCSFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRD 156
                           +  DV +SL+ A+Y+D G+ +   + V +   Q  +        
Sbjct: 310 ENAIYSYGFGAVKAPKVLGDVFQSLVGAVYIDSGLNLDQVWKVFEPLLQPLVTPEAVPIH 369

Query: 157 AKTELQEWAHAKFGVTP-EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
              EL E           +Y ++          F     +      +G +  K+ A+++A
Sbjct: 370 PVRELYELCDKHLKKLEWDYSLSGD-------LFLARALVGNKVLGRGTNVQKKMAKKLA 422

Query: 216 AAEVLKRE 223
           A   + + 
Sbjct: 423 AINAIAKL 430



 Score = 91.7 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 43/145 (29%), Positives = 72/145 (49%), Gaps = 12/145 (8%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLL 59
           M A++   L K I Y      +L +ALT    ++ ++   YER+E LGD  L   +ST L
Sbjct: 26  MQAIQ---LRKAINYNIPASKIL-EALT---AANCHEPYCYERIELLGDAYLKWAVSTRL 78

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS----DLRKDVCSFMTSIQ 115
           +  F    EGEL++    ++S      +A E  L +++R++         D+    + + 
Sbjct: 79  YLKFSDFPEGELTITRGKIISNSALHYLALEKGLETYVRINPFVPGREPTDLQELSSKVL 138

Query: 116 ADVVESLIAALYLDGGIEVAGTFVD 140
           A+VVE+LI A Y+  G + A   V+
Sbjct: 139 ANVVEALIGAYYVHHGDKGARHVVE 163



 Score = 42.8 bits (100), Expect = 0.037,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 8/71 (11%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI----SGLAPAQGMDC-SKRAAEQV 214
            L E    +    P+Y     +GP H   FT    +           G    +   A+  
Sbjct: 453 ALHELCSQRGWPCPDYNTHSETGPAHAKMFTCTASVRIEQGEKQECIGQPRPTINKAKDS 512

Query: 215 AAA---EVLKR 222
           AA    E L++
Sbjct: 513 AARVLMETLQK 523


>gi|189908862|gb|ACE60552.1| dicer-like protein 2 [Brassica rapa]
          Length = 1392

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 60/245 (24%), Positives = 103/245 (42%), Gaps = 33/245 (13%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNH 62
            +    +E  + Y F ++SLL +ALTH S         Y+RLEFLGD +L  LI+  L+  
Sbjct: 1146 VNVRYMESLLNYKFKDKSLLVEALTHGSYMIPEIPRCYQRLEFLGDSVLDYLITKHLYGE 1205

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFM---------- 111
            + +   G L+   ++ V+ E  +QVA + +L   +   S DL K +   +          
Sbjct: 1206 YPNLSPGLLTDMRSASVNNECYAQVAVKSNLHKHVLHASHDLHKHISRTVSEFERLSSVQ 1265

Query: 112  -----------TSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSGKFRRDAK 158
                         +  DV+ESL  A+++D G   EV    +        +     +    
Sbjct: 1266 SSFGWESEIAFPKVLGDVIESLAGAIHVDSGYNKEVVFACIKPLLG-CMITPETVKLHPV 1324

Query: 159  TELQEWAHAKFGVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAA 216
             EL E          +++++   G  + +  F V VE   ++ A       K+ A+++A 
Sbjct: 1325 RELTELCQKA-----QFELSKVKGFENGEAFFPVEVEAKEMSFAHTARAFDKKMAKKLAY 1379

Query: 217  AEVLK 221
             EVL 
Sbjct: 1380 KEVLN 1384



 Score = 51.6 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 58/164 (35%), Gaps = 36/164 (21%)

Query: 41   ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-- 98
            E LE LGD  L   +   LF  +D+  EG LS   + ++S  T  +      L  FIR  
Sbjct: 994  ESLETLGDSFLKYAVCQHLFQSYDTHHEGLLSTIKDEMISNVTLCKFGCNQKLQGFIRNE 1053

Query: 99   -----------------------VSSDLRKDVCSF----MTSIQADVVESLIAALYLDGG 131
                                   +S      +         S+ ADVVE+LI A   +GG
Sbjct: 1054 CFEPKGWMVPGQSSAAYALVNDYLSESRNMYIARRMNLKRKSV-ADVVEALIGAYLSEGG 1112

Query: 132  IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
               A TF++    +    +   +R+          A+  V   Y
Sbjct: 1113 ELAALTFMNWVGIKVDFTTTMIQREP------SIQAEKLVNVRY 1150


>gi|73953910|ref|XP_868231.1| PREDICTED: similar to Ribonuclease III (RNase III) (Drosha) (p241)
            isoform 3 [Canis familiaris]
          Length = 1282

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 57/181 (31%), Positives = 93/181 (51%), Gaps = 10/181 (5%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1103 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1162

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG L++  +SLV+  T ++VA EL +  +  +++D  K   +  T   AD++ES 
Sbjct: 1163 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYA-ITNDKTKRPVALRTKTLADLLESF 1221

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA-----HAKFGVTPEY 175
            IAALY+D  +E   TF++  +  R  +    +   D K++LQ+         K    P Y
Sbjct: 1222 IAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLY 1281

Query: 176  K 176
            K
Sbjct: 1282 K 1282



 Score = 98.6 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 54/107 (50%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 954  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1013

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
              +        S +    A+  E+LI A+YL+G +E A     +   
Sbjct: 1014 LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1060


>gi|297832974|ref|XP_002884369.1| hypothetical protein ARALYDRAFT_317213 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297330209|gb|EFH60628.1| hypothetical protein ARALYDRAFT_317213 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 2033

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 57/243 (23%), Positives = 101/243 (41%), Gaps = 34/243 (13%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNH 62
            +    +E  + Y+F ++SLL +ALTH S         Y+RLEFLGD +L  LI+  L++ 
Sbjct: 1792 VNVGYMESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDK 1851

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF------------ 110
            +     G L+   ++ V+ E  + VA + +L   I  +S +     S             
Sbjct: 1852 YPCLSPGLLTDMRSASVNNECYALVAVKENLHKHILHASHVLHKHISRTVSEFEQSSLQS 1911

Query: 111  ---------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSGKFRRDAKT 159
                        +  DV+ESL  A+++D G   EV    +        +     +     
Sbjct: 1912 TFGWECDISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLG-CMITPETVKLHPVR 1970

Query: 160  ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAE 218
            EL E          +++++     ++   FTV V+   ++ A       K+ A+++A  E
Sbjct: 1971 ELTELCQKS-----QFELSKAKDFNY---FTVEVKAKEMSFAHTAKASDKKMAKKLAYKE 2022

Query: 219  VLK 221
            VL 
Sbjct: 2023 VLN 2025



 Score = 42.8 bits (100), Expect = 0.038,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 27/58 (46%)

Query: 41   ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
            E LE LGD  L   +   LF H  +  EG LS + + ++S     Q   +  L  FIR
Sbjct: 1640 ESLETLGDSFLKYAVCQQLFQHCHTHHEGLLSTKKDGMISNVMLCQFGCQQKLQGFIR 1697


>gi|119174400|ref|XP_001239561.1| hypothetical protein CIMG_09182 [Coccidioides immitis RS]
          Length = 1357

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 57/254 (22%), Positives = 101/254 (39%), Gaps = 40/254 (15%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            + ++K++GY F    LL  A TH S   + +    Y+RLEFLGD +L +     +++   
Sbjct: 1081 AQVKKKLGYDFKYPKLLRSAFTHPSYPSAWARVPCYQRLEFLGDALLDMACVEHIYHKHP 1140

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSFMTSI--------- 114
                  L+    ++VS +    VA  L L S +   S+ L+  + +++  I         
Sbjct: 1141 DKDPQWLTEHKMAMVSNKFLGSVAVRLGLHSHLNHFSTSLQSQITNYVEEIEAAELESGD 1200

Query: 115  --------------QADVVESLIAALYLDGGI------EVAGTFVDKYWKQRALKSGKFR 154
                            D+VE+ I A+++D G       E    F+ K+++   +      
Sbjct: 1201 PPDAWTLTSDPPKCLPDMVEAYIGAIFIDSGFSFEVVEEFFQKFLKKHFEDMTIYDTYAN 1260

Query: 155  RDAKTELQEWAHAKFGVTPEY-----KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            +   T L       FG +  Y     +V +  GP    R    V +     A+G+  S R
Sbjct: 1261 KHPTTYLHNRLAIDFGCS-NYCLKAGEVPYVDGPG--TRVLAAVIVHDEVVAEGVASSSR 1317

Query: 210  AAEQVAAAEVLKRE 223
             A+  A+   L + 
Sbjct: 1318 YAKLKASEAALSKL 1331



 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 39/121 (32%), Gaps = 27/121 (22%)

Query: 20   RSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
              L  +ALT        H +          ++YERLEFLGD  L +  S  LF       
Sbjct: 921  PELALEALTKDSDNTDEHRAQQIHFQRGMGKNYERLEFLGDCFLKMATSISLFAMNPDND 980

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
            E              T  Q             S    ++  +      ADV E+LI A  
Sbjct: 981  E------RGWYPGGLTLLQ-----GKGQ----SKGATENKHALADKTIADVCEALIGACC 1025

Query: 128  L 128
            L
Sbjct: 1026 L 1026


>gi|297737474|emb|CBI26675.3| unnamed protein product [Vitis vinifera]
          Length = 337

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 64/245 (26%), Positives = 103/245 (42%), Gaps = 31/245 (12%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M A     +E+ I Y F N+ LLE+ALTHSS + S   SY+RLEF+GD  LG  +S  +F
Sbjct: 1   MEA-SVEAVERIINYKFRNKKLLEEALTHSSYTDSA--SYQRLEFIGDAALGCALSNYVF 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM--------- 111
             + S   G+LS+   + +S E  ++VA  + L  ++R ++    D              
Sbjct: 58  LAYPSLDPGQLSLIRAANISTEKLARVAVRVGLYQYVRHNAAALDDKVREFALAVQEEGD 117

Query: 112 ----------TSIQADVVESLIAALYLDGGIEV-AGTFVDKYWKQRALKSGKFRR--DAK 158
                         AD+VES+ AA+Y+D   ++     + +   +  +     ++     
Sbjct: 118 SVLYGGSVKAPKFLADIVESVAAAIYVDCNFDLQVLWVIFRGLLEPIVTHEALQQQPQPV 177

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E               +R G  +       V + G   A G    K  A+  AA E
Sbjct: 178 TLLYELCQKDGKHVDIKH--WRKGSKN----IASVYVGGKFIASGSSDEKEIAKLNAAKE 231

Query: 219 VLKRE 223
            L++ 
Sbjct: 232 ALQKL 236



 Score = 48.5 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSK-RAAE 212
           AK +L E+   K    P Y++    GP H+  F   V I    G+   QG    + + AE
Sbjct: 261 AKQKLHEFCSKKKWPKPSYRIEKEVGPAHEKGFLCSVHIETVDGVLVMQGDTKPRVKDAE 320

Query: 213 QVAA 216
             AA
Sbjct: 321 NSAA 324


>gi|145338056|ref|NP_566199.4| DCL2 (DICER-LIKE 2); ATP binding / ATP-dependent helicase/ RNA
            binding / double-stranded RNA binding / helicase/ nucleic
            acid binding / ribonuclease III [Arabidopsis thaliana]
 gi|322518659|sp|Q3EBC8|DCL2_ARATH RecName: Full=Endoribonuclease Dicer homolog 2; AltName:
            Full=Dicer-like protein 2; Short=AtDCL2
 gi|332640403|gb|AEE73924.1| protein dicer-like 2 [Arabidopsis thaliana]
 gi|332640405|gb|AEE73926.1| protein dicer-like 2 [Arabidopsis thaliana]
          Length = 1388

 Score =  148 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 101/243 (41%), Gaps = 34/243 (13%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNH 62
            +    +E  + Y+F ++SLL +ALTH S         Y+RLEFLGD +L  LI+  L++ 
Sbjct: 1147 VNVGYMESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDK 1206

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFM---------- 111
            +     G L+   ++ V+ E  + VA + +L   I   S  L K +   +          
Sbjct: 1207 YPCLSPGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQS 1266

Query: 112  ----------TSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSGKFRRDAKT 159
                        +  DV+ESL  A+++D G   EV    +        +     +     
Sbjct: 1267 TFGWESDISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLG-CMITPETVKLHPVR 1325

Query: 160  ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAE 218
            EL E          +++++     D    FTV V+   ++ A       K+ A+++A  E
Sbjct: 1326 ELTELCQKW-----QFELSKAKDFD---SFTVEVKAKEMSFAHTAKASDKKMAKKLAYKE 1377

Query: 219  VLK 221
            VL 
Sbjct: 1378 VLN 1380



 Score = 43.9 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 51/144 (35%), Gaps = 28/144 (19%)

Query: 41   ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
            E LE LGD  L   +   LF H  +  EG LS + + ++S     Q   +  L  FIR  
Sbjct: 995  ESLETLGDSFLKYAVCQQLFQHCHTHHEGLLSTKKDGMISNVMLCQFGCQQKLQGFIRDE 1054

Query: 101  SDLRK----------------------------DVCSFMTSIQADVVESLIAALYLDGGI 132
                K                               +      ADVVESLI A   +GG 
Sbjct: 1055 CFEPKGWMVPGQSSAAYSLVNDTLPESRNIYVASRRNLKRKSVADVVESLIGAYLSEGGE 1114

Query: 133  EVAGTFVDKYWKQRALKSGKFRRD 156
              A  F++    +    + K +RD
Sbjct: 1115 LAALMFMNWVGIKVDFTTTKIQRD 1138


>gi|145331748|ref|NP_001078101.1| DCL2 (DICER-LIKE 2); ATP binding / ATP-dependent helicase/ RNA
            binding / double-stranded RNA binding / helicase/ nucleic
            acid binding / ribonuclease III [Arabidopsis thaliana]
 gi|332640404|gb|AEE73925.1| protein dicer-like 2 [Arabidopsis thaliana]
          Length = 1374

 Score =  148 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 101/243 (41%), Gaps = 34/243 (13%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNH 62
            +    +E  + Y+F ++SLL +ALTH S         Y+RLEFLGD +L  LI+  L++ 
Sbjct: 1133 VNVGYMESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDK 1192

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFM---------- 111
            +     G L+   ++ V+ E  + VA + +L   I   S  L K +   +          
Sbjct: 1193 YPCLSPGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQS 1252

Query: 112  ----------TSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSGKFRRDAKT 159
                        +  DV+ESL  A+++D G   EV    +        +     +     
Sbjct: 1253 TFGWESDISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLG-CMITPETVKLHPVR 1311

Query: 160  ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAE 218
            EL E          +++++     D    FTV V+   ++ A       K+ A+++A  E
Sbjct: 1312 ELTELCQKW-----QFELSKAKDFD---SFTVEVKAKEMSFAHTAKASDKKMAKKLAYKE 1363

Query: 219  VLK 221
            VL 
Sbjct: 1364 VLN 1366



 Score = 43.9 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 51/144 (35%), Gaps = 28/144 (19%)

Query: 41   ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
            E LE LGD  L   +   LF H  +  EG LS + + ++S     Q   +  L  FIR  
Sbjct: 981  ESLETLGDSFLKYAVCQQLFQHCHTHHEGLLSTKKDGMISNVMLCQFGCQQKLQGFIRDE 1040

Query: 101  SDLRK----------------------------DVCSFMTSIQADVVESLIAALYLDGGI 132
                K                               +      ADVVESLI A   +GG 
Sbjct: 1041 CFEPKGWMVPGQSSAAYSLVNDTLPESRNIYVASRRNLKRKSVADVVESLIGAYLSEGGE 1100

Query: 133  EVAGTFVDKYWKQRALKSGKFRRD 156
              A  F++    +    + K +RD
Sbjct: 1101 LAALMFMNWVGIKVDFTTTKIQRD 1124


>gi|94450856|gb|ABF19798.1| dicer-like 2 spliceform 2 [Arabidopsis thaliana]
          Length = 1374

 Score =  148 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 101/243 (41%), Gaps = 34/243 (13%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNH 62
            +    +E  + Y+F ++SLL +ALTH S         Y+RLEFLGD +L  LI+  L++ 
Sbjct: 1133 VNVGYMESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDK 1192

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFM---------- 111
            +     G L+   ++ V+ E  + VA + +L   I   S  L K +   +          
Sbjct: 1193 YPCLSPGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQS 1252

Query: 112  ----------TSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSGKFRRDAKT 159
                        +  DV+ESL  A+++D G   EV    +        +     +     
Sbjct: 1253 TFGWESDISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLG-CMITPETVKLHPVR 1311

Query: 160  ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAE 218
            EL E          +++++     D    FTV V+   ++ A       K+ A+++A  E
Sbjct: 1312 ELTELCQKW-----QFELSKAKDFD---SFTVEVKAKEMSFAHTAKASDKKMAKKLAYKE 1363

Query: 219  VLK 221
            VL 
Sbjct: 1364 VLN 1366



 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 38/144 (26%), Positives = 52/144 (36%), Gaps = 28/144 (19%)

Query: 41   ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
            E LE LGD  L   +   LF H  +  EG LS + + ++S     Q   +  L  FIR  
Sbjct: 981  ESLETLGDSFLKYAVCQQLFQHCHTHHEGLLSTKKDGMISNVMLCQFGCQQKLQGFIRDE 1040

Query: 101  SDLRK----------------------------DVCSFMTSIQADVVESLIAALYLDGGI 132
                K                               +      ADVVESLI A   +GG 
Sbjct: 1041 CFEPKGWMVPGQSSAAYSLVNDTLPESRNIYVASRRNLKRKSVADVVESLIGAYLSEGGE 1100

Query: 133  EVAGTFVDKYWKQRALKSGKFRRD 156
              A  F++    +  L + K +RD
Sbjct: 1101 LAALMFMNWVGIKVDLTTTKIQRD 1124


>gi|94450854|gb|ABF19797.1| dicer-like 2 spliceform 1 [Arabidopsis thaliana]
          Length = 1386

 Score =  148 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 101/243 (41%), Gaps = 34/243 (13%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNH 62
            +    +E  + Y+F ++SLL +ALTH S         Y+RLEFLGD +L  LI+  L++ 
Sbjct: 1145 VNVGYMESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDK 1204

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFM---------- 111
            +     G L+   ++ V+ E  + VA + +L   I   S  L K +   +          
Sbjct: 1205 YPCLSPGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQS 1264

Query: 112  ----------TSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSGKFRRDAKT 159
                        +  DV+ESL  A+++D G   EV    +        +     +     
Sbjct: 1265 TFGWESDISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLG-CMITPETVKLHPVR 1323

Query: 160  ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAE 218
            EL E          +++++     D    FTV V+   ++ A       K+ A+++A  E
Sbjct: 1324 ELTELCQKW-----QFELSKAKDFD---SFTVEVKAKEMSFAHTAKASDKKMAKKLAYKE 1375

Query: 219  VLK 221
            VL 
Sbjct: 1376 VLN 1378



 Score = 45.5 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 38/144 (26%), Positives = 52/144 (36%), Gaps = 28/144 (19%)

Query: 41   ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
            E LE LGD  L   +   LF H  +  EG LS + + ++S     Q   +  L  FIR  
Sbjct: 993  ESLETLGDSFLKYAVCQQLFQHCHTHHEGLLSTKKDGMISNVMLCQFGCQQKLQGFIRDE 1052

Query: 101  SDLRK----------------------------DVCSFMTSIQADVVESLIAALYLDGGI 132
                K                               +      ADVVESLI A   +GG 
Sbjct: 1053 CFEPKGWMVPGQSSAAYSLVNDTLPESRNIYVASRRNLKRKSVADVVESLIGAYLSEGGE 1112

Query: 133  EVAGTFVDKYWKQRALKSGKFRRD 156
              A  F++    +  L + K +RD
Sbjct: 1113 LAALMFMNWVGIKVDLTTTKIQRD 1136


>gi|126134051|ref|XP_001383550.1| hypothetical protein PICST_30953 [Scheffersomyces stipitis CBS
           6054]
 gi|126095699|gb|ABN65521.1| predicted protein [Scheffersomyces stipitis CBS 6054]
          Length = 566

 Score =  148 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 93/222 (41%), Gaps = 21/222 (9%)

Query: 18  ANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            +++L E+   H S+ +               ERLEFLGD +L  L++ ++++ F SA E
Sbjct: 209 KDQTLYERVFVHKSVVNGKTYLDQNDLINSHNERLEFLGDSVLNNLVTLIIYDKFPSASE 268

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G+L+   + L+   T +Q + E      ++  +D           + AD+ E+ I AL +
Sbjct: 269 GKLTKMRSQLIDNHTLTQFSFEYGFDKRLKTKTDEEILKTGD-QKVYADIFEAYIGALSV 327

Query: 129 DGGIEV--AGTFVDKYWKQRALK------SGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           + G+++     +++K +  +              ++AK+EL           P Y V   
Sbjct: 328 ERGLDLREIKDWLEKLYAPKLEAFKVNFLQESVNKEAKSELYSIV-GTASSHPLYVVVEE 386

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
               HD  F V   +      +    S++ A   AA + LK 
Sbjct: 387 GNGSHD--FVVECRMGNDVLGRAKAPSQKEAGLRAAMDALKN 426


>gi|16331355|ref|NP_442083.1| ribonuclease III [Synechocystis sp. PCC 6803]
 gi|2500555|sp|Q55637|RNC2_SYNY3 RecName: Full=Ribonuclease 3 2; AltName: Full=Ribonuclease III 2;
           Short=RNase III 2
 gi|1001526|dbj|BAA10153.1| ribonuclease III [Synechocystis sp. PCC 6803]
          Length = 244

 Score =  147 bits (373), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 53/209 (25%), Positives = 96/209 (45%), Gaps = 22/209 (10%)

Query: 5   RYSTLEKRIGYA---FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +   L +R+G       + +L++ ALTH+S   S +++Y++LEF+GD ++ L  + +L  
Sbjct: 10  QLKALLRRLGLTDNTPVDWNLVDLALTHAS--QSPEQNYQQLEFVGDAVVRLASAEVLMK 67

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           H+     GE+S     LVS  T +       L  F+ ++  +  D  +   S+ AD  E+
Sbjct: 68  HYPQTSVGEMSALRAILVSDRTLAGWGELYGLDRFLWITPAVLADK-NGRVSLMADSFEA 126

Query: 122 LIAALYLD-GGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           L+ ALYL  G + +   ++ ++   +A  ++      + K  LQ W  A +   PEY+V 
Sbjct: 127 LLGALYLSVGDLSLIRPWLSEHLLAKATEIRQDPALHNYKEALQAWTQAHYKCLPEYRVE 186

Query: 179 -------FRSGPDHDPRFTVVVEISGLAP 200
                   +SG      F   V +     
Sbjct: 187 PLDQNLPQQSG------FQATVWLGDQPL 209


>gi|120437705|ref|YP_863391.1| ribonuclease III [Gramella forsetii KT0803]
 gi|117579855|emb|CAL68324.1| ribonuclease III [Gramella forsetii KT0803]
          Length = 243

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 44/208 (21%), Positives = 95/208 (45%), Gaps = 12/208 (5%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLISTLLFN 61
           ++ L + +G+   +    +KA TH S++   ++    ++ER+EFLGD +L  ++++ LF 
Sbjct: 19  FNILTQILGFKPKSILHYKKAFTHRSLNRRDEDGNAINFERMEFLGDAMLSAVVASHLFK 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
                 EG L+   + +VS +  +++ ++L L   ++ +    +       +I  ++ E+
Sbjct: 79  AVPGGNEGYLTKMRSKVVSRKHLNELGKDLGLIEHVQTNIPKDQFG----VNIHGNLFEA 134

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVT 178
           L+ A+YLD G +    F+ +      +   +        K+ + EW   +     ++ V 
Sbjct: 135 LVGAIYLDRGYKHCKRFIYERVINPYVDIEQLEGKVISYKSLVIEWCQKEKKE-FDFNVY 193

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDC 206
             +G D    F V + I G   A+    
Sbjct: 194 EDTGNDELKHFAVKLRIGGRVVAKARAT 221


>gi|113474882|ref|YP_720943.1| RNAse III [Trichodesmium erythraeum IMS101]
 gi|110165930|gb|ABG50470.1| RNAse III [Trichodesmium erythraeum IMS101]
          Length = 250

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 49/191 (25%), Positives = 89/191 (46%), Gaps = 7/191 (3%)

Query: 21  SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
           +LL+ ALTHS++S ++  + E+LEF GD ++ L+ + LL  ++ +   GE +   + LVS
Sbjct: 30  NLLDLALTHSTVSSTH--NNEKLEFFGDAVVRLVAAQLLLENYPNCSVGEFTAIRSILVS 87

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIEVAGTFV 139
             + +Q+A +   + ++ VS     D         AD  E+++ ALYL    +E+   ++
Sbjct: 88  DRSLAQIADKYGWSRYLLVSKSAAGDKV-GRERRLADSFEAVLGALYLSTNNLELIRPWL 146

Query: 140 DKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEIS 196
           D ++++    ++        K  LQE     +   P Y+    +    D  RF   V   
Sbjct: 147 DSHFERLIAEIRKDPACHSYKAALQELTQGYYKTLPNYQAHEVNKIYGDRERFFAEVWFK 206

Query: 197 GLAPAQGMDCS 207
           G     G   S
Sbjct: 207 GQKLGVGKGPS 217


>gi|260831340|ref|XP_002610617.1| hypothetical protein BRAFLDRAFT_202604 [Branchiostoma floridae]
 gi|229295984|gb|EEN66627.1| hypothetical protein BRAFLDRAFT_202604 [Branchiostoma floridae]
          Length = 1760

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 95/243 (39%), Gaps = 43/243 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y   E+ + Y+F +++ + +A TH S   ++  + Y+RLEFLGD +L  LI+  LF    
Sbjct: 1509 YQQFEETVQYSFNDKAYMLQAFTHPSYHYNTITDCYQRLEFLGDAVLDYLITNHLFKDPQ 1568

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF-------------- 110
                G L+   ++LV+    + +A + D   +++  S    ++ S               
Sbjct: 1569 QHSPGALTDLRSALVNNTIFASLAVKYDYHKYLKFVSPELFNIISNFVQFQQEQGEEQGM 1628

Query: 111  ------------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149
                              +     DV ES+  A+YLD G+  E       +  K    K 
Sbjct: 1629 DSQTYINDEGEEESEDIEVPKALGDVFESVAGAIYLDSGMSLETVWRVYYRMMKPLIDKF 1688

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            S K  R    EL E        +P  +        +D +  V V + G    +G+  + R
Sbjct: 1689 SAKVPRSPVRELLEMEPETAKFSPSERT-------YDGKVRVTVTVIGKGQFKGVGRNYR 1741

Query: 210  AAE 212
             A+
Sbjct: 1742 IAK 1744



 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 2/76 (2%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             SL+ +ALT S+    +  + ERLE +GD  L   I+T L+  +    EG+LS   +  V
Sbjct: 1230 PSLILQALTLSNAGDFF--NLERLETIGDSFLKHAITTFLYCTYSRVHEGKLSYMRSRQV 1287

Query: 80   SAETCSQVARELDLAS 95
            S     ++ +   LAS
Sbjct: 1288 SNLNLYRLGKRKGLAS 1303


>gi|302815180|ref|XP_002989272.1| hypothetical protein SELMODRAFT_129431 [Selaginella moellendorffii]
 gi|300143015|gb|EFJ09710.1| hypothetical protein SELMODRAFT_129431 [Selaginella moellendorffii]
          Length = 524

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 101/248 (40%), Gaps = 32/248 (12%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLL 59
           ++++ +  LE  +GY+F +R+LL +ALTHSS    S    YERLEF+GD +L  L++  +
Sbjct: 190 LNSIDFEGLENTLGYSFGSRNLLAQALTHSSSRQASMVPIYERLEFIGDAVLDHLLTRHI 249

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD------------- 106
           +  +     G L+    + +++E+ ++   +  L + I   S+                 
Sbjct: 250 YFSYKDLHPGRLTDLRCAALNSESFARAMVKHKLHAHILHESNDFHSQIKTYAKHALNME 309

Query: 107 ---------VCSFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRD 156
                           +  DV +SL+ ALY+D G+ +   + V +   Q  +        
Sbjct: 310 ENAIYSYGFGAVKAPKVLGDVFQSLVGALYIDSGLNLDQVWKVFEPLLQPLVTPEAVPIH 369

Query: 157 AKTELQEWAHAKFGVTP-EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
              EL E           +Y ++          F     +      +G +  K+ A+++A
Sbjct: 370 PVRELYELCDKHMKKLEWDYSLSGD-------LFLARALVGNKVLGRGTNVQKKMAKKLA 422

Query: 216 AAEVLKRE 223
           A   + + 
Sbjct: 423 AINAIAKL 430



 Score = 91.7 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 43/145 (29%), Positives = 72/145 (49%), Gaps = 12/145 (8%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLL 59
           M A++   L K I Y      +L +ALT    ++ ++   YER+E LGD  L   +ST L
Sbjct: 26  MQAIQ---LRKAINYNIPASKIL-EALT---AANCHEPYCYERIELLGDAYLKWAVSTRL 78

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS----DLRKDVCSFMTSIQ 115
           +  F    EGEL++    ++S      +A E  L +++R++         D+    + + 
Sbjct: 79  YLKFSDFPEGELTITRGKIISNSALHYLALEKGLETYVRINPFVPGREPTDLQELSSKVL 138

Query: 116 ADVVESLIAALYLDGGIEVAGTFVD 140
           A+VVE+LI A Y+  G + A   V+
Sbjct: 139 ANVVEALIGAYYVHHGDKGARHVVE 163



 Score = 43.9 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 5/67 (7%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI----SGLAPAQGMDC-SKRAAEQV 214
            L E    +    P+Y     +GP H   FT    +           G    +   A+  
Sbjct: 453 ALHELCSQRGWPCPDYNTHSETGPAHAKMFTCTASVRIEQGEKQECIGQPRPTINKAKDS 512

Query: 215 AAAEVLK 221
           AA  +++
Sbjct: 513 AARMLME 519


>gi|270001216|gb|EEZ97663.1| hypothetical protein TcasGA2_TC016208 [Tribolium castaneum]
          Length = 1063

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 8/165 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
              +  E+ +G  F +  LL +A T  S   ++    S +RLEFLGD +L L+ S  L+ +
Sbjct: 867  NLTKFEESVGLQFNHIRLLARAFTDRSVGYTNLTLGSNQRLEFLGDTVLQLIASEYLYKY 926

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
            F    EG LS+  +SLV+  T + V  +L ++++   ++          T  +AD++E+ 
Sbjct: 927  FPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMSNYAVYNNP----KAELKTKDRADLLEAF 982

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWA 165
            I ALY+D G+E    F       R       +   D K++LQ+  
Sbjct: 983  IGALYVDQGLEFCEVFCQVTLFPRLQDFIMNQDWNDPKSKLQQCC 1027



 Score = 95.5 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 1/126 (0%)

Query: 39  SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
             ERLEFLGD ++  L S  LF  F   +EG L+    ++V  +  + +A+ L L  F+ 
Sbjct: 724 HNERLEFLGDAVVEFLSSIHLFYTFPDLEEGGLATYRAAIVQNQHLAVLAKTLKLDQFML 783

Query: 99  VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD-A 157
            +          +    A+  E+L+ AL+LDGGI V      +   +      +   +  
Sbjct: 784 YAHGSDLCHDLELRHAMANCFEALMGALFLDGGINVVDRVFSETLFKVNPDLLEVWMNLP 843

Query: 158 KTELQE 163
              LQE
Sbjct: 844 PHPLQE 849


>gi|303314275|ref|XP_003067146.1| Type III restriction enzyme, res subunit family protein [Coccidioides
            posadasii C735 delta SOWgp]
 gi|240106814|gb|EER25001.1| Type III restriction enzyme, res subunit family protein [Coccidioides
            posadasii C735 delta SOWgp]
          Length = 1487

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 55/254 (21%), Positives = 99/254 (38%), Gaps = 40/254 (15%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            + ++K++GY F    LL  A TH S   + +    Y+RLEFLGD +L +     +++   
Sbjct: 1211 AQVKKKLGYVFKYPKLLRSAFTHPSYPSAWARVPCYQRLEFLGDALLDMACVEHIYHKHP 1270

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSFMTSI--------- 114
                  L+    ++VS +    VA  L L S +   S+ L+  + +++  I         
Sbjct: 1271 DKDPQWLTEHKMAMVSNKFLGSVAVRLGLHSHLNHFSTSLQSQITNYVEEIEAAELESGD 1330

Query: 115  --------------QADVVESLIAALYLDGGI------EVAGTFVDKYWKQRALKSGKFR 154
                            D+VE+ I A+++D         E    F+ K+++   +      
Sbjct: 1331 SPDAWTLTSDPPKCLPDMVEAYIGAIFIDSNFSFEVVEEFFQKFLKKHFEDMTIYDTYAN 1390

Query: 155  RDAKTELQEWAHAKFGVTPEY-----KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            +   T L       FG +  Y     +V +  GP    R    V +      +G+  S R
Sbjct: 1391 KHPTTYLHNRLAIDFGCS-NYCLKAGEVPYVDGPG--TRVLAAVIVHDEVVTEGVASSSR 1447

Query: 210  AAEQVAAAEVLKRE 223
             A+  A+   L + 
Sbjct: 1448 YAKLKASEAALSKL 1461



 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 49/142 (34%), Gaps = 33/142 (23%)

Query: 20   RSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
              L  +ALT        H +          ++YERLEFLGD  L +  S  LF       
Sbjct: 1015 PELALEALTKDSDNTDEHRAQQIHFQRGMGKNYERLEFLGDCFLKMATSISLFAMNPDND 1074

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIRV---------------------SSDLRKD 106
            E +  V+   LV  +   + A    L  FIR                      S    ++
Sbjct: 1075 EYDFHVKRMCLVCNQNLFKTAVRFKLYEFIRSQSFSRRGWYPEGLTLLQGKGQSKGATEN 1134

Query: 107  VCSFMTSIQADVVESLIAALYL 128
              +      ADV E+LI A  L
Sbjct: 1135 KHALADKTIADVCEALIGACCL 1156


>gi|158300291|ref|XP_320248.4| AGAP012289-PA [Anopheles gambiae str. PEST]
 gi|157013088|gb|EAA00264.4| AGAP012289-PA [Anopheles gambiae str. PEST]
          Length = 1672

 Score =  145 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 62/264 (23%), Positives = 103/264 (39%), Gaps = 65/264 (24%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              +E  +GY F NR+ L +A TH+S  S+S   SY++LEFLGD +L  L+S  ++    S
Sbjct: 1424 ERIEATLGYRFRNRTYLLQAFTHTSYTSNSLTGSYQQLEFLGDAVLDFLVSMYIYERNPS 1483

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIR---------VSSDLRKDVCSFM----- 111
               G+L+   ++LV+    + V    +L   I          +   +    C        
Sbjct: 1484 MSPGQLTDLRSALVNNVNLACVLVRNELHRHILSQSPMLTDAIGKFVAVHRCHRNQGSNW 1543

Query: 112  ------------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153
                                +  DV+E+LI A+YLD G ++A T+ +  ++    +   F
Sbjct: 1544 VRLLTEESDTPMAEYVDVPKVLGDVLEALIGAIYLDSGNDLAATW-EVCFRLLRDEIADF 1602

Query: 154  RRDAKTELQEWAHAKFGVTPEYKVTFR--SGPDHDPRFTV------VVEIS-------GL 198
             R  KT +Q              V  +    P+  P F+       VV +          
Sbjct: 1603 TR--KTPIQ--------------VVRQLYEHPEASPHFSAPFVEEEVVYVKLSYTHRSQR 1646

Query: 199  APAQGMDCSKRAAEQVAAAEVLKR 222
                G   +K  A++ AA   L +
Sbjct: 1647 QTVYGFGKNKDDAKRAAAKIALSK 1670



 Score = 55.9 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 2/76 (2%)

Query: 23   LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
            L +ALT  S +  +  + ER E LGD  L   +S  +     S  EG L+     +VS  
Sbjct: 1199 LLQALTTKSSADVF--NLERFEVLGDAFLKFAVSVYILFRHTSWHEGYLTTCKGRMVSNR 1256

Query: 83   TCSQVARELDLASFIR 98
                 A    L   I+
Sbjct: 1257 NLLYCAMGYGLPGKIK 1272


>gi|255524265|ref|ZP_05391224.1| Ribonuclease III [Clostridium carboxidivorans P7]
 gi|255512090|gb|EET88371.1| Ribonuclease III [Clostridium carboxidivorans P7]
          Length = 152

 Score =  145 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 47/144 (32%), Positives = 69/144 (47%), Gaps = 2/144 (1%)

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
              +  ++A++ DL  +IR+S            SI AD VE++IAA+Y+D G E A  FV
Sbjct: 2   CENSLYEIAKKWDLGKYIRMSKGEELTGGRERVSILADCVEAIIAAIYIDAGFEKAKGFV 61

Query: 140 DKYWKQRALKS--GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197
              +K    K+   K   D KT+LQE       V  +Y +    GP H  +F   V ++ 
Sbjct: 62  LTNFKDTIEKAIKNKIILDYKTKLQEVMQKNGDVDIQYDLMKYEGPPHRRKFYTQVSVNN 121

Query: 198 LAPAQGMDCSKRAAEQVAAAEVLK 221
                G   SK+ +EQ AA + LK
Sbjct: 122 KVLGNGTGYSKKESEQSAAKKALK 145


>gi|41469333|gb|AAS07189.1| putative ribonuclease III, 5'-partial (with alternative splicing)
            [Oryza sativa Japonica Group]
          Length = 1017

 Score =  145 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 90/243 (37%), Gaps = 30/243 (12%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            +   +LE  +GY F +  LL +ALTH S  +      Y+RLEFLGD IL  L +   ++ 
Sbjct: 766  INVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSK 825

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF------------ 110
            +       L+   ++ V+    +  A +  L   I  SS       S+            
Sbjct: 826  YPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLEEFGQSFTGP 885

Query: 111  ---------MTSIQADVVESLIAALYLDG--GIEVAGTFVDKYWKQRALKSGKFRRDAKT 159
                     +  +  DV+ES+  A+YLD     EV    + +  +  A        D   
Sbjct: 886  SYGWEAGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLA-TPETIEPDPVK 944

Query: 160  ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218
             LQE+   +      Y+     G          V+       A      K  A+++A+  
Sbjct: 945  GLQEFCDRRSFK-ITYEKNHVDGVS---SVIARVKAGETTYSATKSGPCKLVAKKLASKA 1000

Query: 219  VLK 221
            VLK
Sbjct: 1001 VLK 1003



 Score = 52.4 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 53/146 (36%), Gaps = 30/146 (20%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
           +ALT       +  S E LE LGD  L  + +  LF+ +    EG L+    +L+S    
Sbjct: 599 EALTTKKCQEEF--SQESLETLGDSFLKYVTTRHLFSEYRLQHEGILTKMKKNLISNAAL 656

Query: 85  SQVARELDLASFIR-------------VSSDLRKDV-----------CSFMTSIQ----A 116
            Q+A   +L  +I              +  D R +                 SI+    A
Sbjct: 657 CQLACSSNLVGYIHAEEFNPRDWIIPCLDYDERDNKKISFLAPNGMYSQRKMSIKSKRIA 716

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKY 142
           D VE+LI A     G + A   +   
Sbjct: 717 DSVEALIGAYLSTAGEKAAFLLMKSL 742


>gi|320037410|gb|EFW19347.1| hypothetical protein CPSG_03731 [Coccidioides posadasii str.
            Silveira]
          Length = 1465

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 55/254 (21%), Positives = 99/254 (38%), Gaps = 40/254 (15%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            + ++K++GY F    LL  A TH S   + +    Y+RLEFLGD +L +     +++   
Sbjct: 1189 AQVKKKLGYVFKYPKLLRSAFTHPSYPSAWARVPCYQRLEFLGDALLDMACVEHIYHKHP 1248

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSFMTSI--------- 114
                  L+    ++VS +    VA  L L S +   S+ L+  + +++  I         
Sbjct: 1249 DKDPQWLTEHKMAMVSNKFLGSVAVRLGLHSHLNHFSTSLQSQITNYVEEIEAAELESGD 1308

Query: 115  --------------QADVVESLIAALYLDGGI------EVAGTFVDKYWKQRALKSGKFR 154
                            D+VE+ I A+++D         E    F+ K+++   +      
Sbjct: 1309 SPDAWTLTSDPPKCLPDMVEAYIGAIFIDSNFSFEVVEEFFQKFLKKHFEDMTIYDTYAN 1368

Query: 155  RDAKTELQEWAHAKFGVTPEY-----KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            +   T L       FG +  Y     +V +  GP    R    V +      +G+  S R
Sbjct: 1369 KHPTTYLHNRLAIDFGCS-NYCLKAGEVPYVDGPG--TRVLAAVIVHDEVVTEGVASSSR 1425

Query: 210  AAEQVAAAEVLKRE 223
             A+  A+   L + 
Sbjct: 1426 YAKLKASEAALSKL 1439



 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 49/142 (34%), Gaps = 33/142 (23%)

Query: 20   RSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
              L  +ALT        H +          ++YERLEFLGD  L +  S  LF       
Sbjct: 993  PELALEALTKDSDNTDEHRAQQIHFQRGMGKNYERLEFLGDCFLKMATSISLFAMNPDND 1052

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIRV---------------------SSDLRKD 106
            E +  V+   LV  +   + A    L  FIR                      S    ++
Sbjct: 1053 EYDFHVKRMCLVCNQNLFKTAVRFKLYEFIRSQSFSRRGWYPEGLTLLQGKGQSKGATEN 1112

Query: 107  VCSFMTSIQADVVESLIAALYL 128
              +      ADV E+LI A  L
Sbjct: 1113 KHALADKTIADVCEALIGACCL 1134


>gi|222625282|gb|EEE59414.1| hypothetical protein OsJ_11564 [Oryza sativa Japonica Group]
          Length = 1371

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 92/243 (37%), Gaps = 34/243 (13%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            +   +LE  +GY F +  LL +ALTH S  +      Y+RLEFLGD IL  L +   ++ 
Sbjct: 1124 INVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSK 1183

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF------------ 110
            +       L+   ++ V+    +  A +  L   I  SS       S+            
Sbjct: 1184 YPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLGQSFTGPSYG 1243

Query: 111  ------MTSIQADVVESLIAALYLDG--GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162
                  +  +  DV+ES+  A+YLD     EV    + +  +  A        D    LQ
Sbjct: 1244 WEAGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLA-TPETIEPDPVKGLQ 1302

Query: 163  EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK----RAAEQVAAAE 218
            E+   +      Y+     G          V+      +     +K    + A+++A+  
Sbjct: 1303 EFCDRRSFK-ITYEKNHVDGVS---SVIARVKAGETTYS----ATKSGPCKLAKKLASKA 1354

Query: 219  VLK 221
            VLK
Sbjct: 1355 VLK 1357



 Score = 52.0 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 53/146 (36%), Gaps = 30/146 (20%)

Query: 25   KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
            +ALT       +  S E LE LGD  L  + +  LF+ +    EG L+    +L+S    
Sbjct: 957  EALTTKKCQEEF--SQESLETLGDSFLKYVTTRHLFSEYRLQHEGILTKMKKNLISNAAL 1014

Query: 85   SQVARELDLASFIR-------------VSSDLRKDV-----------CSFMTSIQ----A 116
             Q+A   +L  +I              +  D R +                 SI+    A
Sbjct: 1015 CQLACSSNLVGYIHAEEFNPRDWIIPCLDYDERGNKKISFLAPNGMYSQRKMSIKSKRIA 1074

Query: 117  DVVESLIAALYLDGGIEVAGTFVDKY 142
            D VE+LI A     G + A   +   
Sbjct: 1075 DSVEALIGAYLSTAGEKAAFLLMKSL 1100


>gi|242763899|ref|XP_002340666.1| RNA helicase/RNAse III, putative [Talaromyces stipitatus ATCC 10500]
 gi|218723862|gb|EED23279.1| RNA helicase/RNAse III, putative [Talaromyces stipitatus ATCC 10500]
          Length = 1494

 Score =  145 bits (366), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 56/250 (22%), Positives = 95/250 (38%), Gaps = 35/250 (14%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
             +E ++GY F    LL  A TH S   + S    Y+RLEFLGD +L ++    L+  F  
Sbjct: 1208 QVEMKLGYCFQYPKLLRSAFTHPSYPSAWSTVPCYQRLEFLGDSLLDMVCVEDLYERFPD 1267

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCS--------------- 109
                 L+    ++VS +    +A  L L + ++  S+ L+  +                 
Sbjct: 1268 RDPQWLTEHKMAMVSNKFLGSLAVRLSLHTHLQYFSNPLQAQIARAVQDSQLAYDSHQTV 1327

Query: 110  -------FMTSIQADVVESLIAALYLDGGIE------VAGTFVDKYWKQRALKSGKFRRD 156
                         +D+VE+ + A+++D G +           +  Y++  AL      + 
Sbjct: 1328 DFWLHTDDPPKCLSDMVEAYLGAIFVDSGFDFGVIESFYAKHIKPYFEDMALYDTFANKH 1387

Query: 157  AKTELQEWAHAKFGVTPEYKVTFRSGPDHD---PRFTVVVEISGLAPAQGMDCSKRAAEQ 213
              T L       FG   +Y +     P  D   P     V +  +  AQG   S R A+ 
Sbjct: 1388 PTTFLHRKLTDDFGC-IQYTLRAAEIPSVDGAPPVVLAAVLVHDVVLAQGTASSGRYAKI 1446

Query: 214  VAAAEVLKRE 223
             A+   +K  
Sbjct: 1447 KASEVAMKNL 1456



 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 54/174 (31%), Gaps = 33/174 (18%)

Query: 32   ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91
                  ++YERLEFLGD  L +  S  LF    + +E +  V   +L+        A + 
Sbjct: 1037 FQRGMGKNYERLEFLGDCFLKMATSISLFVESPNDQEYDFHVNRMTLICNRNLFNTAIQR 1096

Query: 92   DLASFIR-----------------VSSDLRKDVCSF--MTSIQADVVESLIAALYLDGG- 131
             +   IR                           +        ADV E+LI A  L GG 
Sbjct: 1097 KIYEHIRSKGFSRRNWYPDGMKLLRGKANEDQGLTHALGEKTIADVCEALIGASLLSGGP 1156

Query: 132  ---IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
                ++A   V             +         E+  +     P Y++    G
Sbjct: 1157 VNRFDMAVKAVTALVNSDHHNVDNWA--------EY--SSRYSLPPYQIKEADG 1200


>gi|167234451|ref|NP_001107840.1| Dicer-2 [Tribolium castaneum]
 gi|270002830|gb|EEZ99277.1| hypothetical protein TcasGA2_TC001108 [Tribolium castaneum]
          Length = 1623

 Score =  145 bits (366), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 59/260 (22%), Positives = 101/260 (38%), Gaps = 49/260 (18%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHF 63
            ++  +E+R+GY F NR+ L +ALTHSS S +    SYERLEFLGD +L  LI+  +F H 
Sbjct: 1370 QWREIEQRLGYTFTNRAFLLQALTHSSYSPNRITLSYERLEFLGDAVLDFLITCYIFEHC 1429

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIR------------------------- 98
               + G+++   +SLV+  T + +        F+                          
Sbjct: 1430 GHLEPGQVTDLRSSLVNNNTFASLVVRCGFHKFLLMMNSNLQGHIDKFADYLASKNYVID 1489

Query: 99   -----VSSDLRKDVCSF--MTSIQADVVESLIAALYLDGGIE---VAGTFVDKYWKQRAL 148
                 +  +   ++  +  +  +  D+ E+L  A+YLD   +   V   F    W++  L
Sbjct: 1490 DEVLILLEEDEMNIAEYVDVPKVLGDIFEALAGAIYLDSNKDLKTVWRVFYKIIWREIDL 1549

Query: 149  KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR-----FTVVVEISGLAPAQG 203
             S    ++    L E         P++      G  +        F             G
Sbjct: 1550 FSKNVPKNVIRRLYEC---HTVYPPQFSKALEVG--NQKTMVSLDFMCE---GRKKRVHG 1601

Query: 204  MDCSKRAAEQVAAAEVLKRE 223
               +K  A++ AA   L+  
Sbjct: 1602 FGTNKILAKRAAAKIALRAL 1621



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 10/94 (10%)

Query: 11   KRIGYAFAN--RSLLE--KALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64
            + +   F N   +L +  +ALT    +    +  + ERLE LGD  L  + S  +   F 
Sbjct: 1130 QILDVQFDNQSPNLCQIYQALT----AAEANDIVNLERLETLGDSFLKFVASLYIIFKFP 1185

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
            +  EG+ +     LVS +    +    +L   ++
Sbjct: 1186 TYNEGKSTTLKGKLVSNKNLYYLGVRKNLGGILK 1219


>gi|116788280|gb|ABK24820.1| unknown [Picea sitchensis]
          Length = 330

 Score =  144 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 101/248 (40%), Gaps = 33/248 (13%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHS-YQESYERLEFLGDRILGLLISTLLF 60
           S +    LE  + Y+F   +L+ +++TH+S     +   Y+RLEFLGD +L  LI+   +
Sbjct: 78  SNVNVRYLESLLKYSFRVHTLVVESVTHASYKEPSFSGCYQRLEFLGDAVLDYLITLYFY 137

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF---------- 110
             +     G L+   ++ V+ +  +Q A + +L   +R +S    +  +           
Sbjct: 138 KTYPGLSPGLLTDLRSAAVNNDCYAQAAVKCNLHQQLRHASSELHNQITEFAKLISSSSA 197

Query: 111 --------------MTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRR 155
                         +  +  D++ES+  A+ +D   +    +   K   +  +     + 
Sbjct: 198 SGDHFFGWTTTEVAVPKVLGDLIESIAGAVLVDSEFDTQLVWNAMKPLLEPLVTPKTIKY 257

Query: 156 DAKTELQEWAHAKFGVTPEYKVT-FRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQ 213
               ELQE    +F     Y      S  +      V V + G +  +     +KR A++
Sbjct: 258 QPVRELQELCQKEF-----YTCCFDDSQEEGTSTVKVEVRVKGDSYIETCEASNKRTAKK 312

Query: 214 VAAAEVLK 221
           +AA +VLK
Sbjct: 313 LAAEKVLK 320


>gi|251764794|sp|Q69LX2|DCL2B_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 2b; AltName:
            Full=Dicer-like protein 2b; Short=OsDCL2b
          Length = 1377

 Score =  144 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 92/243 (37%), Gaps = 34/243 (13%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            +   +LE  +GY F +  LL +ALTH S  +      Y+RLEFLGD IL  L +   ++ 
Sbjct: 1130 IDVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSK 1189

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF------------ 110
            +       L+   ++ V+    +  A +  L   I  SS       S+            
Sbjct: 1190 YPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLGQSFTGPSYG 1249

Query: 111  ------MTSIQADVVESLIAALYLDG--GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162
                  +  +  DV+ES+  A+YLD     EV    + +  +  A        D    LQ
Sbjct: 1250 WEAGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLA-TPETIEPDPVKGLQ 1308

Query: 163  EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK----RAAEQVAAAE 218
            E+   +      Y+     G          V+      +     +K    + A+++A+  
Sbjct: 1309 EFCDRRSFK-ITYEKNHVDGVS---SVIARVKAGETTYS----ATKSGPCKLAKKLASKA 1360

Query: 219  VLK 221
            VLK
Sbjct: 1361 VLK 1363



 Score = 52.0 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 53/146 (36%), Gaps = 30/146 (20%)

Query: 25   KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
            +ALT       +  S E LE LGD  L  + +  LF+ +    EG L+    +L+S    
Sbjct: 963  EALTTKKCQEEF--SQESLETLGDSFLKYVTTRHLFSEYRLQHEGILTKMKKNLISNAAL 1020

Query: 85   SQVARELDLASFIR-------------VSSDLRKDV-----------CSFMTSIQ----A 116
             Q+A   +L  +I              +  D R +                 SI+    A
Sbjct: 1021 CQLACSSNLVGYIHAEEFNPRDWIIPCLDYDERGNKKISFLAPNGMYSQRKMSIKSKRIA 1080

Query: 117  DVVESLIAALYLDGGIEVAGTFVDKY 142
            D VE+LI A     G + A   +   
Sbjct: 1081 DSVEALIGAYLSTAGEKAAFLLMKSL 1106


>gi|50726394|dbj|BAD34005.1| CAF protein-like [Oryza sativa Japonica Group]
 gi|51091635|dbj|BAD36404.1| CAF protein-like [Oryza sativa Japonica Group]
          Length = 1375

 Score =  144 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 92/243 (37%), Gaps = 34/243 (13%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            +   +LE  +GY F +  LL +ALTH S  +      Y+RLEFLGD IL  L +   ++ 
Sbjct: 1128 IDVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSK 1187

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF------------ 110
            +       L+   ++ V+    +  A +  L   I  SS       S+            
Sbjct: 1188 YPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLGQSFTGPSYG 1247

Query: 111  ------MTSIQADVVESLIAALYLDG--GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162
                  +  +  DV+ES+  A+YLD     EV    + +  +  A        D    LQ
Sbjct: 1248 WEAGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLA-TPETIEPDPVKGLQ 1306

Query: 163  EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK----RAAEQVAAAE 218
            E+   +      Y+     G          V+      +     +K    + A+++A+  
Sbjct: 1307 EFCDRRSFK-ITYEKNHVDGVS---SVIARVKAGETTYS----ATKSGPCKLAKKLASKA 1358

Query: 219  VLK 221
            VLK
Sbjct: 1359 VLK 1361



 Score = 52.0 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 53/146 (36%), Gaps = 30/146 (20%)

Query: 25   KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
            +ALT       +  S E LE LGD  L  + +  LF+ +    EG L+    +L+S    
Sbjct: 961  EALTTKKCQEEF--SQESLETLGDSFLKYVTTRHLFSEYRLQHEGILTKMKKNLISNAAL 1018

Query: 85   SQVARELDLASFIR-------------VSSDLRKDV-----------CSFMTSIQ----A 116
             Q+A   +L  +I              +  D R +                 SI+    A
Sbjct: 1019 CQLACSSNLVGYIHAEEFNPRDWIIPCLDYDERGNKKISFLAPNGMYSQRKMSIKSKRIA 1078

Query: 117  DVVESLIAALYLDGGIEVAGTFVDKY 142
            D VE+LI A     G + A   +   
Sbjct: 1079 DSVEALIGAYLSTAGEKAAFLLMKSL 1104


>gi|316975421|gb|EFV58865.1| putative RNase3 domain protein [Trichinella spiralis]
          Length = 1903

 Score =  144 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 55/251 (21%), Positives = 89/251 (35%), Gaps = 41/251 (16%)

Query: 2    SALRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLF 60
            +    S  E  IGY F +RSLL +ALTHS+   +   + Y+RLEFLGD +L  LI+  L+
Sbjct: 1648 NRFSLSQFEDIIGYRFKDRSLLVQALTHSTYFYNEVTDCYQRLEFLGDAVLDHLITRHLY 1707

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELD-----------------------LASFI 97
                    G L+   ++L     C  +   ++                       L  ++
Sbjct: 1708 EDKRMHSPGMLTDLRSALYFMYLCPGLMMMIEKFVKTLNIIKENANFDREVRVHLLNLYL 1767

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG--IEVAGTFVDKYWKQRALK-----S 150
                +   +    +     D+ ES+  A+YLD G  +           ++   K      
Sbjct: 1768 LEGEEENAEEQVEVPKALGDIFESVAGAIYLDSGCSLHTVWCIYYNMLREEIEKCCLNPP 1827

Query: 151  GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
                RD    L E    +   +             + +  V V + G     G   S R 
Sbjct: 1828 ISPIRD----LLELEPDRVKFS------RVERNAVEGKVKVAVTVEGKGRFVGAGRSYRI 1877

Query: 211  AEQVAAAEVLK 221
            A+  AA   L+
Sbjct: 1878 AKSTAAKRALR 1888



 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            N   +  A+T S+++ ++  + E LE LGD  L  + +   +  +    EG+LS+  + +
Sbjct: 1399 NPREVLHAITASAVAETF--NLEGLEILGDSFLKYVTTVYCYKAYSKMHEGKLSLLRSRM 1456

Query: 79   VSAETCSQVARELDLASFIR 98
            +S     ++ +  ++  ++ 
Sbjct: 1457 ISNYNLYKLGKRKNIPQYMI 1476


>gi|115453927|ref|NP_001050564.1| Os03g0583900 [Oryza sativa Japonica Group]
 gi|122246906|sp|Q10HL3|DCL2A_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 2a; AltName:
            Full=Dicer-like protein 2a; Short=OsDCL2a
 gi|50399921|gb|AAT76309.1| putative RNA helicase/RNAseIII protein, C-terminus truncated [Oryza
            sativa Japonica Group]
 gi|108709535|gb|ABF97330.1| Type III restriction enzyme, res subunit family protein, expressed
            [Oryza sativa Japonica Group]
 gi|113549035|dbj|BAF12478.1| Os03g0583900 [Oryza sativa Japonica Group]
 gi|215701504|dbj|BAG92928.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 1410

 Score =  144 bits (365), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 90/243 (37%), Gaps = 30/243 (12%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            +   +LE  +GY F +  LL +ALTH S  +      Y+RLEFLGD IL  L +   ++ 
Sbjct: 1159 INVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSK 1218

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF------------ 110
            +       L+   ++ V+    +  A +  L   I  SS       S+            
Sbjct: 1219 YPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLEEFGQSFTGP 1278

Query: 111  ---------MTSIQADVVESLIAALYLDG--GIEVAGTFVDKYWKQRALKSGKFRRDAKT 159
                     +  +  DV+ES+  A+YLD     EV    + +  +  A        D   
Sbjct: 1279 SYGWEAGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLA-TPETIEPDPVK 1337

Query: 160  ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218
             LQE+   +      Y+     G          V+       A      K  A+++A+  
Sbjct: 1338 GLQEFCDRRSFK-ITYEKNHVDGVS---SVIARVKAGETTYSATKSGPCKLVAKKLASKA 1393

Query: 219  VLK 221
            VLK
Sbjct: 1394 VLK 1396



 Score = 52.0 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 53/146 (36%), Gaps = 30/146 (20%)

Query: 25   KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
            +ALT       +  S E LE LGD  L  + +  LF+ +    EG L+    +L+S    
Sbjct: 992  EALTTKKCQEEF--SQESLETLGDSFLKYVTTRHLFSEYRLQHEGILTKMKKNLISNAAL 1049

Query: 85   SQVARELDLASFIR-------------VSSDLRKDV-----------CSFMTSIQ----A 116
             Q+A   +L  +I              +  D R +                 SI+    A
Sbjct: 1050 CQLACSSNLVGYIHAEEFNPRDWIIPCLDYDERDNKKISFLAPNGMYSQRKMSIKSKRIA 1109

Query: 117  DVVESLIAALYLDGGIEVAGTFVDKY 142
            D VE+LI A     G + A   +   
Sbjct: 1110 DSVEALIGAYLSTAGEKAAFLLMKSL 1135


>gi|240255863|ref|NP_680697.4| ATRTL1 (ARABIDOPSIS THALIANA RNASEIII-LIKE 1); RNA binding /
           ribonuclease III [Arabidopsis thaliana]
 gi|332658200|gb|AEE83600.1| protein RNAse II-like 1 [Arabidopsis thaliana]
          Length = 264

 Score =  144 bits (364), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 56/236 (23%), Positives = 88/236 (37%), Gaps = 27/236 (11%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +   +LEK + Y F ++SLL KA T +S      ESYE LE LGD IL + I       +
Sbjct: 27  MEIESLEKILNYKFKDKSLLLKAFTDASYVDDKSESYELLELLGDSILNMGIIYDFIKLY 86

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-----------------DLRKD 106
                G L+      V  E  ++VA    L S++R                     L  +
Sbjct: 87  PKEAPGPLTKLRAVNVDTEKLARVAVNHQLYSYLRHKKPLLEEQILEFVEAMEKYPLHSN 146

Query: 107 VCSFMTSIQADVVESLIAALYLDG-GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWA 165
               +  + AD+VES I A+++D    E     +    +   +   K +    TEL E  
Sbjct: 147 GLLKVPKVLADIVESTIGAIFMDCNSTETVWKVIKPLLEP-IIHLDKMKSHPMTELNEMC 205

Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA-AEQVAAAEVL 220
             +       K+T +   + +  +     I       G    K+  A   AA   +
Sbjct: 206 QKRNL-----KLTSKDTWEENQTYCF--HIEDKFVGCGHHPVKKETARNFAAKNAI 254


>gi|218193216|gb|EEC75643.1| hypothetical protein OsI_12390 [Oryza sativa Indica Group]
          Length = 1318

 Score =  144 bits (364), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 90/243 (37%), Gaps = 30/243 (12%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            +   +LE  +GY F +  LL +ALTH S  +      Y+RLEFLGD IL  L +   ++ 
Sbjct: 1067 INVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSK 1126

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF------------ 110
            +       L+   ++ V+    +  A +  L   I  SS       S+            
Sbjct: 1127 YPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLEEFGQSFTGP 1186

Query: 111  ---------MTSIQADVVESLIAALYLDG--GIEVAGTFVDKYWKQRALKSGKFRRDAKT 159
                     +  +  DV+ES+  A+YLD     EV    + +  +  A        D   
Sbjct: 1187 SYGWEAGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLA-TPETIEPDPVK 1245

Query: 160  ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218
             LQE+   +      Y+     G          V+       A      K  A+++A+  
Sbjct: 1246 GLQEFCDRRSFK-ITYEKNHVDGVS---SVIARVKAGETTYSATKSGPCKLVAKKLASKA 1301

Query: 219  VLK 221
            VLK
Sbjct: 1302 VLK 1304



 Score = 52.0 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 53/146 (36%), Gaps = 30/146 (20%)

Query: 25   KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
            +ALT       +  S E LE LGD  L  + +  LF+ +    EG L+    +L+S    
Sbjct: 900  EALTTKKCQEEF--SQESLETLGDSFLKYVTTRHLFSEYRLQHEGILTKMKKNLISNAAL 957

Query: 85   SQVARELDLASFIR-------------VSSDLRKDV-----------CSFMTSIQ----A 116
             Q+A   +L  +I              +  D R +                 SI+    A
Sbjct: 958  CQLACSSNLVGYIHAEEFNPRDWIIPCLDYDERDNKKISFLAPNGMYSQRKMSIKSKRIA 1017

Query: 117  DVVESLIAALYLDGGIEVAGTFVDKY 142
            D VE+LI A     G + A   +   
Sbjct: 1018 DSVEALIGAYLSTAGEKAAFLLMKSL 1043


>gi|242033789|ref|XP_002464289.1| hypothetical protein SORBIDRAFT_01g015666 [Sorghum bicolor]
 gi|241918143|gb|EER91287.1| hypothetical protein SORBIDRAFT_01g015666 [Sorghum bicolor]
          Length = 462

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 54/230 (23%), Positives = 86/230 (37%), Gaps = 22/230 (9%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNH 62
           +   +L+  IGY F + SLL +ALTHSS +        ERLEFLGD +L  +++   +  
Sbjct: 217 IDVESLQTIIGYVFDDSSLLIEALTHSSYNTAGITTCNERLEFLGDAVLDYILTDYFYRK 276

Query: 63  -FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS------SDLRKDVCSFMTS-- 113
            +       L+    + V+    +  A +  L   I  S       DL         S  
Sbjct: 277 YYPKCTPALLTNLRKASVNNWCYAHAAVKAGLHKHILHSSSKQMIKDLESSGPFSGPSHG 336

Query: 114 ---------IQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTELQE 163
                      AD+ E++  A+Y+D G +    +   +              D  +EL+E
Sbjct: 337 WEPGIGLPEDLADLFEAIAGAIYVDSGNDKEAVWRAMRRLLVPLATPETILLDPVSELKE 396

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAE 212
               K    P Y  T R       R    V+ +G   +  G   ++  AE
Sbjct: 397 LCEHKNYPEPWYSPT-RDDAAGVTRVVAKVKAAGREYSDTGEGPNQDVAE 445



 Score = 44.7 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 49/148 (33%), Gaps = 35/148 (23%)

Query: 25  KALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           +ALT    +   QE  S E LE LGD  L  +    LF+ + + +E  L+      VS  
Sbjct: 51  EALT----TKECQEKFSLESLETLGDSFLKYVTGQDLFSKY-TYREDMLTSMRGEKVSNP 105

Query: 83  TCSQVARELDLASFIR---VSSDLRKDVC-----SFMTSIQ------------------- 115
              Q+A + ++  +IR    S                  +                    
Sbjct: 106 ALCQLACKSEIVGYIRGELFSPKKWTIPGLGYDTRGNNKVLFRTTNDMYSLDEIPIKSKR 165

Query: 116 -ADVVESLIAALYLDGGIEVAGTFVDKY 142
            AD VE+L  A     G   A  F+   
Sbjct: 166 IADTVEALTGAYLSACGELAAVHFIKSL 193


>gi|307105017|gb|EFN53268.1| hypothetical protein CHLNCDRAFT_53967 [Chlorella variabilis]
          Length = 947

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 71/260 (27%), Positives = 100/260 (38%), Gaps = 43/260 (16%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISH-----SYQESYERLEFLGDRILGLLISTLLFNH 62
            +E   G    +  L   ALTH S           +SYERLEFLGD +LGL   TLL   
Sbjct: 684 RVEALTGCGVRDMGLYRTALTHKSALPLELRLEKLQSYERLEFLGDSVLGLCCRTLLMAR 743

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD---------------- 106
              + EG++S R + LVS  + ++ A  L L  ++ +     +                 
Sbjct: 744 CPDSDEGQMSRRNSLLVSGASNARYAAFLGLDRYVLLEPRALRHAPLEASSEQPWHSSAA 803

Query: 107 ----------------VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL-K 149
                                  + AD  E+L+ ALYLD G  VA  F  +  +     +
Sbjct: 804 GSTRRSRRRCHFSAGEGAQHKPGLLADAFEALLGALYLDRGFVVARRFCMRVLEACVEWE 863

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-----PRFTVVVEISGLAPAQGM 204
             +  +D K  L  +A A     P + V   S  ++      P +TV V   G     G 
Sbjct: 864 QLEAAQDFKALLCRYAGAHQKPQPRFSVRSTSQREYKAGLQLPWWTVEVAFGGRVVGSGG 923

Query: 205 DCSKRAAEQVAAAEVLKREG 224
              KR AEQ AA E L+  G
Sbjct: 924 SFDKRGAEQAAAREALEGLG 943


>gi|262340868|ref|YP_003283723.1| ribonuclease III [Blattabacterium sp. (Blattella germanica) str.
           Bge]
 gi|262272205|gb|ACY40113.1| ribonuclease III [Blattabacterium sp. (Blattella germanica) str.
           Bge]
          Length = 250

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 57/231 (24%), Positives = 102/231 (44%), Gaps = 22/231 (9%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALT------HSSISHSYQESYERLEFLGDRILGLLI 55
            ++    L K +G+   N   L++           +++ +Y  +++RLEFLGD +L  +I
Sbjct: 15  DSILVRKLIKILGFCPKNTKFLKEVFIYSFSTKRKNLNPNYSVNFQRLEFLGDAVLNSII 74

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S  L       KEGEL+   + +V     ++++R+L +A          K V S   +I 
Sbjct: 75  SHFLCEKLPEKKEGELTQIRSKIVCRRNLNEISRKLTIADIFL-----EKSVTS--DNIL 127

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD---AKTELQEWAHAKFGVT 172
            + +E+LI  +YL+ G +    FV +      +   K + +    K  + EW+       
Sbjct: 128 GNTLEALIGFIYLEIGYQGCKNFVHQKILHSHVNITKLQNEIFSYKVWMIEWSQKN-KFL 186

Query: 173 PEYKVTFRSGPDHDP---RFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEV 219
             +K TFR   D D     +   + I G     +G   SK+ +E++AA E 
Sbjct: 187 INFK-TFREKEDKDKNLIIYLSELTILGFEIQTKGRGSSKKKSEEMAAKEA 236


>gi|321475108|gb|EFX86072.1| hypothetical protein DAPPUDRAFT_309030 [Daphnia pulex]
          Length = 1607

 Score =  143 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 49/250 (19%), Positives = 97/250 (38%), Gaps = 39/250 (15%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
              + EKR+ Y F N++LL +ALTH+S   +     Y+RLEFLGD +L  L++   +++  
Sbjct: 1348 LESFEKRLRYTFKNKALLIEALTHASYIPNRITNCYQRLEFLGDAVLDYLVTRYYYDNPC 1407

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV--------------SSDLRKDVCSF 110
                  L+   +++V+ ET + +A +     +++               S +    +   
Sbjct: 1408 QYTPAILTDLRSAMVNNETFAVMAVQNRFHLYLKHLSLSLNVILDRFVRSQEENGHLLMH 1467

Query: 111  M--------------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS 150
                                   +  D+ ES+  A+++D G+ +   +            
Sbjct: 1468 NYFVLEETSEPHQSLASNIDVPKVLGDIFESVAGAIFVDSGMSLDAVWKSYLPFLHDALE 1527

Query: 151  GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
                +   + L    H ++    +++    S  D   R  V +EI G    +G   + + 
Sbjct: 1528 KFNEKIPISAL-RVLHERYPNALKFR-KSESLADG--RLCVAIEIQGTRVFKGAGGNSKT 1583

Query: 211  AEQVAAAEVL 220
            A+  AA   L
Sbjct: 1584 AKSAAAKYAL 1593



 Score = 43.1 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 53/141 (37%), Gaps = 29/141 (20%)

Query: 23   LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH--FDSAKEGELSVRFNSLVS 80
            L  A TH           ER E +GD IL L+IS  ++     D   EG LS+     ++
Sbjct: 1162 LTLAKTHEGF------DMERSETIGDSILKLVISIYVYGETGSDRCDEGRLSLMRMRQIN 1215

Query: 81   AETCSQVARELDLASF----------------IRVSSDLRKDVCSFM-----TSIQADVV 119
             +   ++  + D+  F                 +  +D   D+ + +         AD +
Sbjct: 1216 NKHLFKLGAKKDIGEFTVAQRFELMANFLPPGFKTPTDPDTDINAHVQQYVLMKNVADCM 1275

Query: 120  ESLIAALYLDGGIEVAGTFVD 140
            E+LI       GI+ A   +D
Sbjct: 1276 EALIGVYLTTTGIKGAIKLMD 1296


>gi|310831171|ref|YP_003969814.1| putative dsRNA-specific ribonuclease III [Cafeteria roenbergensis
           virus BV-PW1]
 gi|309386355|gb|ADO67215.1| putative dsRNA-specific ribonuclease III [Cafeteria roenbergensis
           virus BV-PW1]
          Length = 362

 Score =  143 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 93/245 (37%), Gaps = 39/245 (15%)

Query: 19  NRSLLEKALTHSSISHS------------------------YQESYERLEFLGDRILGLL 54
           +    ++++TH S                              +SYERLE+LGDR++ L+
Sbjct: 56  HIEYFQESMTHKSYLKKDIFSNNILVKAKKELGNPEGLLELRDKSYERLEYLGDRVIKLI 115

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
           +S  LF+ +    EG ++     +      S+++R++ L+ +  +S  +           
Sbjct: 116 VSMYLFHRYPKQDEGFMTKLQTVIEDKNNLSKMSRDMGLSKYFIISKQIENIRGREAEKF 175

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVT 172
             D+ E+   ALYL  G       +    + +   + K    ++ K +L  + H++    
Sbjct: 176 NEDIFEAFFGALYLSNGFNSCLELLLNLLESQIDYAEKLYRNKNYKDQLLRYYHSQKWGY 235

Query: 173 PEYKVTFRSGPDHDPRFTVVVEIS-------------GLAPAQGMDCSKRAAEQVAAAEV 219
           PEY      GP H   F + V+                +    G+   KR AEQ A+   
Sbjct: 236 PEYYQIGEFGPSHKRNFIMGVKKDEHKETIITENNKLEIGLGYGVGNKKRDAEQSASKMA 295

Query: 220 LKREG 224
           L   G
Sbjct: 296 LILLG 300


>gi|224064945|ref|XP_002301611.1| predicted protein [Populus trichocarpa]
 gi|222843337|gb|EEE80884.1| predicted protein [Populus trichocarpa]
          Length = 303

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 56/237 (23%), Positives = 94/237 (39%), Gaps = 27/237 (11%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               +E+ + Y F ++ LLE+ALTH+S S     SYERLE++GD +L LL +   +  + 
Sbjct: 53  DLDEVEEILHYKFKSKKLLEEALTHASFS-DQCFSYERLEYVGDSVLNLLFTKEQYFLYP 111

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107
               G L+   ++ V  E  ++VA +  L  ++R                 +   L  + 
Sbjct: 112 DLPPGPLTRLRSANVDTEKLARVAIKHKLHRYLRHKMPLLEEQIREFSQAILDYPLHSNG 171

Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTELQEWAH 166
                   AD+VE+ I A+++D    +   + + K   +  +     +    TEL E   
Sbjct: 172 LVETPKALADIVEAAIGAVFIDSNFSIDVVWKIFKDLLEPIISQETLKVHPVTELYEVCQ 231

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA-AEQVAAAEVLKR 222
            +       KV F      +  F   V I      +G    K+  A   AA   L  
Sbjct: 232 KRNL-----KVKFVDLWKENMAF--DVFIDDQFVGRGTYGLKKEIAHNRAAKNALNN 281


>gi|255577153|ref|XP_002529460.1| ribonuclease III, putative [Ricinus communis]
 gi|223531076|gb|EEF32926.1| ribonuclease III, putative [Ricinus communis]
          Length = 342

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 105/246 (42%), Gaps = 33/246 (13%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           ++   S +EK + Y F N+ L+E+ALTHSS +     +Y+RLEF+GD  LGL +S  +F 
Sbjct: 3   ASSSISAVEKILNYTFKNKQLVEEALTHSSYT--ASPNYQRLEFIGDAALGLALSNHVFL 60

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS------------------SDL 103
            +     G LS+   + +S E  ++VA +  L  F+R +                   D 
Sbjct: 61  AYPDLDPGHLSLLRAANISTEKLARVAVKHGLFRFLRHNATALDDKVKEFSDAVLREEDE 120

Query: 104 RKDVCSFM--TSIQADVVESLIAALYLDGGIEVAGTFVD-KYWKQRALKSGKFRR--DAK 158
                  +    + AD+VES+ AA+Y+D   ++   +V  +   +  +     ++     
Sbjct: 121 AVAHGGTVKAPKVLADIVESVAAAVYVDVNFDLQRLWVIFRGLLEPIVTPEDLQQQPQPM 180

Query: 159 TELQEWAHAKFGVTPEYKVTF-RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           T L E    K        +   +SG  +       + + G   A G    K  A+  AA 
Sbjct: 181 TMLFELCQKKGKEV---DIVHWKSGTKN----IASIYVDGGFVASGSSEQKETAKLNAAK 233

Query: 218 EVLKRE 223
             L++ 
Sbjct: 234 GALQKL 239



 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 4/71 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSK-RAAE 212
           AK +L E    K    P Y +   +GP H+ ++   V+I    G+   +G +  + + A+
Sbjct: 266 AKRKLHELCGKKKWPKPTYNIEKETGPSHEKKYVCSVQIATVDGVLYMRGDEKMRVKEAD 325

Query: 213 QVAAAEVLKRE 223
             AA+ +++  
Sbjct: 326 NSAASLMIRAL 336


>gi|212529276|ref|XP_002144795.1| RNA helicase/RNAse III, putative [Penicillium marneffei ATCC 18224]
 gi|210074193|gb|EEA28280.1| RNA helicase/RNAse III, putative [Penicillium marneffei ATCC 18224]
          Length = 1497

 Score =  142 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 56/251 (22%), Positives = 95/251 (37%), Gaps = 35/251 (13%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            + ++K++GY F    LL  A TH S   + S    Y+RLEFLGD +L ++    L+  F 
Sbjct: 1212 NQIDKKLGYRFKYPRLLRSAFTHPSYPTAWSIVPCYQRLEFLGDSLLDMVCIENLYERFP 1271

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-----------------LRKDV 107
                  L+    ++VS +    +A  LDL + ++  S+                      
Sbjct: 1272 DRDPQWLTEHKMAMVSNKFLGSLAVRLDLHTHLQYFSNPLQGRIAQAVEDAQLAYESHQS 1331

Query: 108  CSFM------TSIQADVVESLIAALYLDGGIE------VAGTFVDKYWKQRALKSGKFRR 155
              F           +D+VE+ + A+++D G +           +  Y++  +L      +
Sbjct: 1332 VDFWIMIEDPPKCLSDMVEAYLGAIFVDSGFDFGVIESFYAKHIKPYFEDMSLYDTFANK 1391

Query: 156  DAKTELQEWAHAKFGVTPEYKVTFRSGP--DHDPRFT-VVVEISGLAPAQGMDCSKRAAE 212
               T L       FG   +Y +     P  D  P      V +  +  AQ    S R A+
Sbjct: 1392 HPTTFLHGKLTDDFGC-IQYTLKAAEIPSVDGAPTVVLAAVLVHDVDLAQATASSGRYAK 1450

Query: 213  QVAAAEVLKRE 223
              A+   LK  
Sbjct: 1451 IKASEVALKNL 1461



 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 72/213 (33%), Gaps = 58/213 (27%)

Query: 9    LEKRIGYAFANRSLLEKALT--------HS----SISHSYQESYERLEFLGDRILGLLIS 56
            LE ++GYA        +A+T        H            ++YERLEFLGD  L +  S
Sbjct: 1012 LEIQLGYA-------LEAVTKDSDNTEEHRLEQIQFQRGMGKNYERLEFLGDCFLKMATS 1064

Query: 57   TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS------- 109
              LF    + +E +L V   +L+        A+E  +  +IR S    +           
Sbjct: 1065 ISLFVGSPNDQEFDLHVNRMTLICNRNLFNTAKERKIYEYIR-SKGFSRRNWYPEGMKLL 1123

Query: 110  ---------------FMTSIQADVVESLIAALYLDGG----IEVAGTFVDKYWKQRALKS 150
                                 ADV E+LI A  L GG     ++A   V +         
Sbjct: 1124 RGKANEDKASTHTHGLGEKTIADVCEALIGASLLSGGPVNRFDMAVKAVTRLVNSDLHNV 1183

Query: 151  GKFRRDAKTELQEWA-HAKFGVTPEYKVTFRSG 182
                         WA ++     P Y++   +G
Sbjct: 1184 ES-----------WAGYSSHYSLPSYQIKEANG 1205


>gi|312376926|gb|EFR23879.1| hypothetical protein AND_11908 [Anopheles darlingi]
          Length = 994

 Score =  142 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 59/283 (20%), Positives = 101/283 (35%), Gaps = 76/283 (26%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +   E+ +GY F +RS L +A+TH+S S +   + Y+RLEFLGD IL  LI+  L+    
Sbjct: 711 FEVFERSLGYHFQDRSYLLQAMTHASYSPNRLTDCYQRLEFLGDAILDYLITRHLYEDRR 770

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASF-IRVSSDLRKDVCSFMTSIQADVVE--- 120
               G L+   ++LV+    + +A       + + +S  L++ +  F+  IQ +      
Sbjct: 771 QHSPGALTDLRSALVNNTIFAALAVRHGFHRYFLHLSPGLQEVIDRFV-RIQQENGHRIT 829

Query: 121 -------------------------------SLIAA----------------------LY 127
                                          +L+ +                      ++
Sbjct: 830 EEEYYLPDEDDDMLAADGGFGGGFGEIEGGQALMGSGEAEDVEVPKALGDVFESIAGAIF 889

Query: 128 LDGGI--EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH-----AKFGVTPEYKVTFR 180
           LD G+          K       K        K+ ++E        AKFG          
Sbjct: 890 LDSGMSLNTVWKVYRKMMGPEIEKFSSSV--PKSPIRELLEMEPETAKFGKP-------E 940

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              D   R  V VE+ G    +G+  + R A+  AA   L++ 
Sbjct: 941 KLADG-RRVRVTVEVFGKGTFRGIGRNYRIAKCTAAKCALRQL 982



 Score = 62.8 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 2/89 (2%)

Query: 20  RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
            +++ +ALT S+ +     + ERLE +GD  L   I+T L+  +D+  EG+LS   +  V
Sbjct: 377 PAIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYCRYDNVHEGKLSHLRSKQV 434

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVC 108
           S     ++ R   L   +  +     D  
Sbjct: 435 SNLNLYRLGRRKRLGDCMIAAKFEPHDNW 463


>gi|297739192|emb|CBI28843.3| unnamed protein product [Vitis vinifera]
          Length = 287

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 64/237 (27%), Positives = 101/237 (42%), Gaps = 27/237 (11%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               +E+ +GY+F N+ LLE+A TH+S     Q SYERLEF+GD +L LLI+   F  + 
Sbjct: 29  SLEGVEQILGYSFTNKRLLEEAYTHASC-QKNQFSYERLEFMGDSVLSLLITKEQFFLYP 87

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-----------------DLRKDV 107
             + G L+   ++ V  E  ++VA +  L  F+R                     L  + 
Sbjct: 88  DLQPGRLTRLRSANVDKEKLARVALKHGLHRFLRHKKPKIEQQIYEFAEAIKEYPLHSNG 147

Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTELQEWAH 166
              +  + ADVVES I A+++D    V   + V K   +  +     +    TEL E   
Sbjct: 148 QIEVPKVLADVVESTIGAVFVDCNCSVDTVWKVFKGLLEPMIVPETLKVHPVTELNERCQ 207

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR-AAEQVAAAEVLKR 222
            +     E+K +++   D D  F     I      +G    ++  A   AA   L  
Sbjct: 208 KRGLKL-EFKDSWQRRGDID--F----YIEDYFAGRGEYPLRKDIALNRAAKAALNN 257


>gi|321458470|gb|EFX69538.1| hypothetical protein DAPPUDRAFT_329028 [Daphnia pulex]
          Length = 1597

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 54/255 (21%), Positives = 99/255 (38%), Gaps = 40/255 (15%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLF-NHF 63
            + TLE+ + + F NR  L +A +H+S  H+     Y+RLEFLGD +   LI+  L+    
Sbjct: 1348 FETLERSLNFRFGNRFYLLQAFSHASYHHNRMTSCYQRLEFLGDAVFDYLITKYLYDCRL 1407

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV----------------------SS 101
                 G LS   ++LV+  T + +A       +++                       + 
Sbjct: 1408 FQLTPGALSDMRSALVNNVTFAVLAVRNGFHRYLKHLVPDVHQAIDRFVQQQEMCDHATP 1467

Query: 102  DLRKDVCSF---------MTSIQADVVESLIAALYLDG--GIEVAGTFVDKYWKQRALKS 150
            D    + +          +  +  D+ ESL+ A++LD    ++          +Q     
Sbjct: 1468 DEFFLIGTHDDPMAEAVEVPKVLGDIFESLVGAVFLDSDMSLDAVWRVFYPLIRQEIEAC 1527

Query: 151  GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
             +     K+      + K+    ++K    + PD      V V  +G    +G+  + R 
Sbjct: 1528 TRVV--PKSP-IRTIYEKYPGKVQFKTL-ENLPDGRICIAVEVLNNGRLY-KGVGKNSRI 1582

Query: 211  AEQVAAAEVLKREGI 225
            A+  AA   L + GI
Sbjct: 1583 AKNTAAKYALSQLGI 1597



 Score = 43.1 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 3/74 (4%)

Query: 25   KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA-KEGELSVRFNSLVSAET 83
            +ALT +S+++      ERLE +GD  L L  S  ++    S   EG+++      V    
Sbjct: 1157 RALT-TSVAN-AGYDLERLEVIGDSFLKLAASIRVYCDSPSHFHEGKMTHLRMLQVCNRN 1214

Query: 84   CSQVARELDLASFI 97
              ++ +   +  F+
Sbjct: 1215 LFKLGKIKSIPRFV 1228


>gi|241954756|ref|XP_002420099.1| RNAse III, putative; double-stranded ribonuclease, putative
           [Candida dubliniensis CD36]
 gi|223643440|emb|CAX42319.1| RNAse III, putative [Candida dubliniensis CD36]
          Length = 611

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 61/231 (26%), Positives = 99/231 (42%), Gaps = 32/231 (13%)

Query: 18  ANRSLLEKALTHSSISHSYQ---------ESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            +  L E+   H S  ++ Q            ERLEF GD IL  L++ ++F  F  + E
Sbjct: 243 KDPKLFERVFVHRSTVNNKQYLEANQLLHSHNERLEFYGDSILNNLVTLIIFKEFPDSAE 302

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFI--RVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           G+LS   + LV+ +T  + A +      +  R+S ++ K        I ADV E+ I AL
Sbjct: 303 GDLSKIRSRLVNNKTLVKFAFQYGFDKKLRTRISENVLKTGDQ---KIFADVFEAYIGAL 359

Query: 127 YLDGGIEV--AGTFVDKYWKQRALK------SGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
            L+ G+EV     ++ K +     +           R+AK++L      +  + P Y   
Sbjct: 360 ALEKGLEVEDVKEWLAKLYAPLIHELKIEYIEDPIDREAKSKLYALI-GQDDLHPIYNTI 418

Query: 179 FR-SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA------EVLKR 222
               G +H  +F V   I+G    +G   S + A   AA       E+LK+
Sbjct: 419 QMGDGINH--KFIVQCTINGEELGRGSANSLKEAGLRAAMAGLNNTEILKK 467



 Score = 38.1 bits (88), Expect = 0.85,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 8/77 (10%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
           ++     DAK +L      K G  P Y  +  +G      F VV+ +  +   +  D SK
Sbjct: 524 ENEPLDIDAKNKLYGILGRKIGDKPIYLTSQVNGN----LFRVVLNVRSILICEATDPSK 579

Query: 209 RAAEQVA--AAEVLKRE 223
           + A  +A  A  +L+ E
Sbjct: 580 KKA--MARVAQTLLENE 594


>gi|226510363|ref|NP_001140816.1| hypothetical protein LOC100272891 [Zea mays]
 gi|194701228|gb|ACF84698.1| unknown [Zea mays]
          Length = 376

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 103/242 (42%), Gaps = 32/242 (13%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + +E+ + Y F +R+LLE+ALTH S S     SY+RLEF+GD  LGL  S  L+    + 
Sbjct: 42  ARVERLLRYQFCDRALLEEALTHQSFSDGAL-SYQRLEFVGDAALGLAFSNFLYLTNPTL 100

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIR----------------VSSDLRKD---- 106
             G LS    + +S E  ++VA   DL   +R                V  +L  D    
Sbjct: 101 GPGALSTLRAANISTEKLARVAVRHDLYPLLRRKCPRLDLLVGQFIESVKQELMHDLATA 160

Query: 107 --VCSFM--TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTEL 161
               S +    + AD+VE++ AA+Y+D   ++   + V ++  +  + +        T L
Sbjct: 161 PYGGSVVKAPKVLADIVEAIAAAVYVDCKFDLEKLWKVTRWLFEPIITAETIDEQPVTTL 220

Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            E       V  ++K   + G        V V + G     G    K  A+  AA + L 
Sbjct: 221 HELCQKHGKVA-QFKTWQKDG-----MIVVNVFVGGEMVGLGSSEQKVIAKLNAARDALG 274

Query: 222 RE 223
           + 
Sbjct: 275 KL 276



 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 4/68 (5%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS---GLAPAQGMDCSK-RAAEQ 213
           K +L E    K    P +K+    GP H+  F   V++    G     G   S+ + AE 
Sbjct: 304 KQKLIEQCIRKHWPKPIFKLEKEGGPAHERNFVCSVQVDTQTGTFVTIGESMSRVKDAEN 363

Query: 214 VAAAEVLK 221
            AA ++++
Sbjct: 364 SAAHKMVE 371


>gi|327355811|gb|EGE84668.1| hypothetical protein BDDG_07613 [Ajellomyces dermatitidis ATCC 18188]
          Length = 1509

 Score =  141 bits (356), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 57/250 (22%), Positives = 98/250 (39%), Gaps = 40/250 (16%)

Query: 11   KRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
             R+GY F    LL  A TH+S   + S    Y+RLEFLGD +L ++    L++ +     
Sbjct: 1227 DRLGYQFRYPRLLRSAFTHASFPSAWSRVPCYQRLEFLGDSLLDMVCVEYLYHRYPDRDP 1286

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFMTSI------------- 114
              L+    ++VS +    VA +L L   +   S+ L   +  ++  I             
Sbjct: 1287 QWLTEHKMAMVSNKFLGAVAVKLGLHRHLIYFSNALLGQITRYVEEIELAEADSNNSPDA 1346

Query: 115  ----------QADVVESLIAALYLDGG--IEVAGTF----VDKYWKQRALKSGKFRRDAK 158
                        D++E+ I A+++D     EV   F    + +Y++  ++      +   
Sbjct: 1347 WTTTSDPPKCLPDMLEAYIGAIFVDSNFKFEVVEDFFQQHLKQYFEDMSIYDTFANKHPT 1406

Query: 159  TELQEWAHAKFGVTPEY-----KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            T         FG T  Y     +V    G +  PR    V +     A+G+  S R A+ 
Sbjct: 1407 TYFHNRLTIDFGCT-SYCLKAGEVQMVDGTE--PRVYAAVIVHDEFVAEGIASSVRYAKI 1463

Query: 214  VAAAEVLKRE 223
             A+   L + 
Sbjct: 1464 KASEAALAKL 1473



 Score = 71.6 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 64/193 (33%), Gaps = 47/193 (24%)

Query: 21   SLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
             L  +ALT        H            ++YERLEFLGD  L +  S  LF       E
Sbjct: 1030 HLALEALTKDSDNTEEHRGEQIHFQRGMGKNYERLEFLGDCFLKMATSISLFAMNPDNDE 1089

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRV-------------------SSDLRKDVCS 109
             +  V+   L+  +     A  + L  FIR                    +    ++  S
Sbjct: 1090 YDFHVKRMCLICNQNLFNTAVRIKLYEFIRTQGFSRRNWYPEGIKLLQGKAKSESQNKHS 1149

Query: 110  FMTSIQADVVESLIAALYLDGG----IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEW- 164
                  AD+ E+LI A  L GG     + A   V  +      ++            EW 
Sbjct: 1150 LGDKTIADICEALIGASLLSGGKAHRFDSAVKAVTTFVNSDDHRAS-----------EWN 1198

Query: 165  AHAKFGVTPEYKV 177
             +      P+Y++
Sbjct: 1199 CYVNLYSLPDYQI 1211


>gi|239607869|gb|EEQ84856.1| dicer-like protein [Ajellomyces dermatitidis ER-3]
          Length = 1522

 Score =  141 bits (356), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 57/250 (22%), Positives = 98/250 (39%), Gaps = 40/250 (16%)

Query: 11   KRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
             R+GY F    LL  A TH+S   + S    Y+RLEFLGD +L ++    L++ +     
Sbjct: 1240 DRLGYQFRYPRLLRSAFTHASFPSAWSRVPCYQRLEFLGDSLLDMVCVEYLYHRYPDRDP 1299

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFMTSI------------- 114
              L+    ++VS +    VA +L L   +   S+ L   +  ++  I             
Sbjct: 1300 QWLTEHKMAMVSNKFLGAVAVKLGLHRHLIYFSNALLGQITRYVEEIELAEADSNNSPDA 1359

Query: 115  ----------QADVVESLIAALYLDGG--IEVAGTF----VDKYWKQRALKSGKFRRDAK 158
                        D++E+ I A+++D     EV   F    + +Y++  ++      +   
Sbjct: 1360 WTTTSDPPKCLPDMLEAYIGAIFVDSNFKFEVVEDFFQQHLKQYFEDMSIYDTFANKHPT 1419

Query: 159  TELQEWAHAKFGVTPEY-----KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            T         FG T  Y     +V    G +  PR    V +     A+G+  S R A+ 
Sbjct: 1420 TYFHNRLTIDFGCT-SYCLKAGEVQMVDGTE--PRVYAAVIVHDEFVAEGIASSVRYAKI 1476

Query: 214  VAAAEVLKRE 223
             A+   L + 
Sbjct: 1477 KASEAALAKL 1486



 Score = 71.6 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 64/193 (33%), Gaps = 47/193 (24%)

Query: 21   SLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
             L  +ALT        H            ++YERLEFLGD  L +  S  LF       E
Sbjct: 1043 HLALEALTKDSDNTEEHRGEQIHFQRGMGKNYERLEFLGDCFLKMATSISLFAMNPDNDE 1102

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRV-------------------SSDLRKDVCS 109
             +  V+   L+  +     A  + L  FIR                    +    ++  S
Sbjct: 1103 YDFHVKRMCLICNQNLFNTAVRIKLYEFIRTQGFSRRNWYPEGIKLLQGKAKSESQNKHS 1162

Query: 110  FMTSIQADVVESLIAALYLDGG----IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEW- 164
                  AD+ E+LI A  L GG     + A   V  +      ++            EW 
Sbjct: 1163 LGDKTIADICEALIGASLLSGGKAHRFDSAVKAVTTFVNSDDHRAS-----------EWN 1211

Query: 165  AHAKFGVTPEYKV 177
             +      P+Y++
Sbjct: 1212 CYVNLYSLPDYQI 1224


>gi|261198280|ref|XP_002625542.1| dicer-like protein [Ajellomyces dermatitidis SLH14081]
 gi|239595505|gb|EEQ78086.1| dicer-like protein [Ajellomyces dermatitidis SLH14081]
          Length = 1522

 Score =  141 bits (356), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 57/250 (22%), Positives = 98/250 (39%), Gaps = 40/250 (16%)

Query: 11   KRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
             R+GY F    LL  A TH+S   + S    Y+RLEFLGD +L ++    L++ +     
Sbjct: 1240 DRLGYQFRYPRLLRSAFTHASFPSAWSRVPCYQRLEFLGDSLLDMVCVEYLYHRYPDRDP 1299

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFMTSI------------- 114
              L+    ++VS +    VA +L L   +   S+ L   +  ++  I             
Sbjct: 1300 QWLTEHKMAMVSNKFLGAVAVKLGLHRHLIYFSNALLGQITRYVEEIELAEADSNNSPDA 1359

Query: 115  ----------QADVVESLIAALYLDGG--IEVAGTF----VDKYWKQRALKSGKFRRDAK 158
                        D++E+ I A+++D     EV   F    + +Y++  ++      +   
Sbjct: 1360 WTTTSDPPKCLPDMLEAYIGAIFVDSNFKFEVVEDFFQQHLKQYFEDMSIYDTFANKHPT 1419

Query: 159  TELQEWAHAKFGVTPEY-----KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            T         FG T  Y     +V    G +  PR    V +     A+G+  S R A+ 
Sbjct: 1420 TYFHNRLTIDFGCT-SYCLKAGEVQMVDGTE--PRVYAAVIVHDEFVAEGIASSVRYAKI 1476

Query: 214  VAAAEVLKRE 223
             A+   L + 
Sbjct: 1477 KASEAALAKL 1486



 Score = 71.6 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 64/193 (33%), Gaps = 47/193 (24%)

Query: 21   SLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
             L  +ALT        H            ++YERLEFLGD  L +  S  LF       E
Sbjct: 1043 HLALEALTKDSDNTEEHRGEQIHFQRGMGKNYERLEFLGDCFLKMATSISLFAMNPDNDE 1102

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRV-------------------SSDLRKDVCS 109
             +  V+   L+  +     A  + L  FIR                    +    ++  S
Sbjct: 1103 YDFHVKRMCLICNQNLFNTAVRIKLYEFIRTQGFSRRNWYPEGIKLLQGKAKSESQNKHS 1162

Query: 110  FMTSIQADVVESLIAALYLDGG----IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEW- 164
                  AD+ E+LI A  L GG     + A   V  +      ++            EW 
Sbjct: 1163 LGDKTIADICEALIGASLLSGGKAHRFDSAVKAVTTFVNSDDHRAS-----------EWN 1211

Query: 165  AHAKFGVTPEYKV 177
             +      P+Y++
Sbjct: 1212 CYVNLYSLPDYQI 1224


>gi|302819693|ref|XP_002991516.1| hypothetical protein SELMODRAFT_448444 [Selaginella moellendorffii]
 gi|300140718|gb|EFJ07438.1| hypothetical protein SELMODRAFT_448444 [Selaginella moellendorffii]
          Length = 1719

 Score =  141 bits (356), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 90/240 (37%), Gaps = 36/240 (15%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               +LE ++ Y F NRSLL +A+TH+S  +     Y+RLEFLGD +L  L+S  LF    
Sbjct: 1460 SLESLEHKLQYKFQNRSLLVEAITHASQPNCLL-CYQRLEFLGDGVLDFLVSRHLFETHP 1518

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM------------- 111
                G L+   ++ V+ +  +++     L   ++  S                       
Sbjct: 1519 GLPPGTLTDLRSAAVNNKWFARLVLRHGLHQHLQHGSVELDCEIRKFVQNVKEKPDASCF 1578

Query: 112  -----TSIQADVVESLIAALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEW 164
                   +  D++ES+  A+++D   ++   +  V        +     R      L E 
Sbjct: 1579 EDLSAPKVLGDLLESITGAIFVDTNFDLEKLWRVVLPLLSP-LVTPATLRFHPVRILMEL 1637

Query: 165  AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS----KRAAEQVAAAEVL 220
               K      ++    +         V V     +  +    S    +++A+  AA ++L
Sbjct: 1638 CARKGMKVSFFRTEATTT-------EVRVTFGEESLVE---TSQEKPRKSAKIDAALKML 1687



 Score = 65.9 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 55/152 (36%), Gaps = 36/152 (23%)

Query: 25   KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
            +A+T  S     + SYE LE LGD  L  +++  LF  +D   EG+LS R +        
Sbjct: 1281 EAIT--SKKCHEEFSYESLELLGDSFLKYVVTQKLFLVYDKKHEGQLSARRSRATCNAAL 1338

Query: 85   SQVARELDLASFIR---------VSSDL--------RKDVCSF----------------- 110
             Q+A+   +A +IR             +        R    S+                 
Sbjct: 1339 HQLAKSSGIAEYIRDEEFNPSNWTGPGMLTSDSSKCRHQQGSYENEENYFSSCANGHRGI 1398

Query: 111  MTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
                 ADVVE+LI A     G   A   + + 
Sbjct: 1399 RRKALADVVEALIGAYLATSGPPSAMELMKQL 1430


>gi|196229195|ref|ZP_03128060.1| Ribonuclease III [Chthoniobacter flavus Ellin428]
 gi|196226427|gb|EDY20932.1| Ribonuclease III [Chthoniobacter flavus Ellin428]
          Length = 152

 Score =  141 bits (356), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 52/130 (40%), Gaps = 3/130 (2%)

Query: 99  VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ--RALKSGKFRRD 156
           +             S  +D  E+LI A+YLD         V    +     L+      +
Sbjct: 2   MGRGEESSGGRERASTLSDAFEALIGAMYLDSDFVTVRRIVLTESRDLLEDLEVDPPDTN 61

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  LQE   A   ++P Y +  +SGP+H  RF   +   G     G   SK+ AE  AA
Sbjct: 62  PKGRLQELLQAISPISPTYPIVDQSGPEHQKRFVAKIVWDGKELGSGDGRSKKEAETAAA 121

Query: 217 AEVLKREGIW 226
            + L +E +W
Sbjct: 122 RDALSKE-LW 130


>gi|147770295|emb|CAN62473.1| hypothetical protein VITISV_005321 [Vitis vinifera]
          Length = 287

 Score =  140 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 99/238 (41%), Gaps = 29/238 (12%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               +E+ +GY+F N+ LLE+A TH+S     Q SYERLEF+GD +L LLI+   F  + 
Sbjct: 29  SLEGVEQILGYSFTNKRLLEEAYTHASC-QKNQFSYERLEFMGDSVLSLLITKEQFFLYP 87

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-----------------DLRKDV 107
             + G L+   ++ V  E  ++VA +  L  F+R                     L  + 
Sbjct: 88  DLQPGRLTRLRSANVDKEKLARVALKHGLHRFLRHKKPKIEQQIYEFAEAIKEYPLHSNG 147

Query: 108 CSFMTSIQADVVESLIAALYLD--GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWA 165
              +  + ADVVES I A+++D    ++          +   +     +    TEL E  
Sbjct: 148 QIEVPKVLADVVESTIGAVFVDCNCSVDTVXKVFKGLLEPMIV-PETLKVHPVTELNERC 206

Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR-AAEQVAAAEVLKR 222
             +     E+K +++   D D  F     I      +G    ++  A   AA   L  
Sbjct: 207 QKRGLKL-EFKDSWQRRGDID--F----YIEDYFAGRGEYPLRKDIALNRAAKAALNN 257


>gi|294655098|ref|XP_457193.2| DEHA2B05302p [Debaryomyces hansenii CBS767]
 gi|199429689|emb|CAG85188.2| DEHA2B05302p [Debaryomyces hansenii]
          Length = 540

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 57/228 (25%), Positives = 94/228 (41%), Gaps = 23/228 (10%)

Query: 18  ANRSLLEKALTHSSISHSYQ---------ESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            +  L  +   H SI ++              ERLEFLGD +L  L++ ++FN F  A E
Sbjct: 188 NDIKLCNRVFIHKSIINNKSYLHKSELMASHNERLEFLGDSVLNNLVTVIIFNKFPEASE 247

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT-SIQADVVESLIAALY 127
           GELS   +SLV+  T ++ +        +R  S++   +    T  I AD+ E+ I AL 
Sbjct: 248 GELSKIRSSLVNNVTLAEFSILYGFDKKLR--SNINDQILKDSTQKIYADIFEAYIGALA 305

Query: 128 LDGGIEVAG--TFVDKYWKQRALK-------SGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
           ++   +      ++      R  K       + +  +DAK+EL           P+Y+V 
Sbjct: 306 IERKFDYTEIQQWLTTLMDSRLNKHARQISSTEEINKDAKSELYSLI-GTAAFHPQYEVV 364

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
             +G      F +   +       G   S + A   AA E LK + + 
Sbjct: 365 K-TGDGSSNPFVIRCTMGDDVLGVGTAPSNKDAGLRAAMEALKNKSLL 411



 Score = 38.9 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 4/67 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           AK EL        G  P Y++   S      +F   +++ G+  A  +D +K+ A   AA
Sbjct: 469 AKNELYSILGKNMGTIPIYEIYEMS----SKQFRAELKVKGIHVATAVDATKKRACSRAA 524

Query: 217 AEVLKRE 223
             ++  +
Sbjct: 525 MTIINNK 531


>gi|296434189|tpg|DAA12515.1| TPA_exp: Dicer 1 protein [Naumovia castellii]
          Length = 610

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 91/225 (40%), Gaps = 25/225 (11%)

Query: 18  ANRSLLEKALTHSSISHSYQE---------SYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           ++++L   A  H S+ +   +         S ERLEFLGD  LG L++ +++  +  A E
Sbjct: 116 SDQNLENLAFIHRSLPNMNVKLTELQKTVMSNERLEFLGDSWLGALVAYIIYKKYPYANE 175

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM-TSIQADVVESLIAALY 127
           G LS    ++V+     ++  +L     ++ +            T   AD VE+ I AL 
Sbjct: 176 GALSKMKEAIVNNNNLEKICEKLGFKERLKENIPRSSMKIKDRLTKNYADCVEAYIGALV 235

Query: 128 LDG---GIEVAGTFVDKYWKQRALKSG------KFRRDAKTELQEWAH-AKFGVTPEYKV 177
           +D           ++++  ++  ++ G         ++AK EL  +      G    YK 
Sbjct: 236 IDRFSTEFNDVALWLEELSEEHFIELGPMMVKEPLNKNAKGELGAFLQFNNIGAKISYKR 295

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                P     F V V +       G   + R AEQ AA E L +
Sbjct: 296 LNDKSP-----FKVEVRLGNNLLGIGDGSNVREAEQRAAMEALAQ 335



 Score = 39.7 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 6/57 (10%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL--APAQGMDCSKRAAEQVAAAEVLK 221
            K+ + PEY        D    F  V  I G+     +G   SK+ ++  +A + L 
Sbjct: 544 GKYKLYPEYNTEQLGMTD----FYTVCFIKGVGVEIGKGHGRSKKISQHKSAEDALN 596


>gi|297834980|ref|XP_002885372.1| hypothetical protein ARALYDRAFT_479566 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297331212|gb|EFH61631.1| hypothetical protein ARALYDRAFT_479566 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 391

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/246 (23%), Positives = 106/246 (43%), Gaps = 33/246 (13%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M ++    LEK + Y F N+SLL++A+TH+S +     SYERLEF+GD  +GL IS  L+
Sbjct: 57  MESM--EALEKILNYKFKNKSLLKEAITHTSCTD--FPSYERLEFVGDSAIGLAISNYLY 112

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR----------------VSSDLR 104
             + S +  +LS+   + VS E  ++V     L  F+R                V  +  
Sbjct: 113 LTYPSLEPHQLSLLRAANVSTEKLARVTLNHGLYQFLRRNAPSLDEKVKEFSDAVGKEDD 172

Query: 105 KDVCSFM----TSIQADVVESLIAALYLDGGIEVAGTFVD-KYWKQRALKSGKFRR--DA 157
             V          + AD+ ES+  A+Y+D   ++   +V  +   +  +     ++    
Sbjct: 173 FSVAYGGLVKAPKVLADLFESVAGAVYVDVNFDLQRLWVIFRGLLEPIVTLDDLQKQPQP 232

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
            + L +  H         ++  ++  D +      + +     A G   +K  A  +AA 
Sbjct: 233 VSMLFKLCHKHKK-----RIDIKNWKDGN-ISIADIYLDDEFLASGRAENKDIARLIAAK 286

Query: 218 EVLKRE 223
           E L++ 
Sbjct: 287 EALRKL 292



 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 40/138 (28%), Gaps = 26/138 (18%)

Query: 94  ASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153
             F+       KD+                    L    E      + +  +  +     
Sbjct: 266 DEFLASGRAENKDIAR------------------LIAAKEALRKLSEVFPVEMVIDEDSV 307

Query: 154 R---RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI----SGLAPAQGMDC 206
               + AKT+L E    K    P Y +       H  RF    +I          +G + 
Sbjct: 308 EIELKHAKTKLNEICLKKKWPKPIYSIEEDRTSVHGKRFVCSAKIKIPTEETLYMKGDEQ 367

Query: 207 SK-RAAEQVAAAEVLKRE 223
           SK + AE  +A  +++  
Sbjct: 368 SKIKKAESSSAYHMIRAL 385


>gi|328696734|ref|XP_003240110.1| PREDICTED: endoribonuclease dcr-1-like isoform 3 [Acyrthosiphon
            pisum]
          Length = 1630

 Score =  139 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 52/193 (26%), Positives = 85/193 (44%), Gaps = 35/193 (18%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            Y  LE+RIGY+F ++ LL +ALTH +    + E Y+RLEFLGD IL  LI+T +  H   
Sbjct: 1373 YELLERRIGYSFKHKHLLAQALTHPTYQFGFSECYQRLEFLGDAILDFLITTYIIEHCYH 1432

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD----------LRKDVCSFM---- 111
               GE++   +SLV+  T + ++  + L  FI   S             +   +      
Sbjct: 1433 KTPGEITDIRSSLVNNITFASLSARIGLHRFILAKSVQMTEAIDRFYEHQQKNNHKIGQE 1492

Query: 112  ------------------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKS-- 150
                                +  D+ ESLIAA+YLD   ++   + +   + ++ +K   
Sbjct: 1493 VLYLIEESDCYAAESVDVPKVLGDLFESLIAAIYLDCNRDLNFVWAICYRFLEKEIKEFC 1552

Query: 151  GKFRRDAKTELQE 163
                ++    L E
Sbjct: 1553 DNVPKNPIRILHE 1565



 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 31/59 (52%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
            +YER+E  GD  L   +S +LF+ F S  EG L+     LV       V R L+L S++
Sbjct: 1151 NYERMETYGDSFLKFAVSLVLFDAFPSDNEGVLTELKMKLVGNRNLLYVGRNLNLGSYL 1209


>gi|322510548|gb|ADX05862.1| putative ribonuclease III [Organic Lake phycodnavirus 1]
          Length = 293

 Score =  139 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 58/278 (20%), Positives = 107/278 (38%), Gaps = 61/278 (21%)

Query: 3   ALRYSTLEKRIG-----YAFANRSLLEKALTHSSISHS---------------YQESYER 42
            ++ + +E+ +      +   +  + E+A  +SS                    Q S ER
Sbjct: 14  KIKKTDIEQILRNYHIYHKVKHMEIWERAFVNSSYIKQPNIMYSSCPFNCLELKQSSNER 73

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102
           LEF+GD IL L+    L+  F  A EG ++ +  +LV  +   ++A +L L  ++ +S  
Sbjct: 74  LEFIGDGILELITKYYLYKRFPDADEGFMTEKKINLVKNDHIGKLAYKLGLHKYLLLSKQ 133

Query: 103 LRKDVCSFMTSIQADVVESLIAALYLD------------GGIEVAGTFVDKYWKQRALKS 150
             +            + ES + AL+LD             GI+    F++  + +    +
Sbjct: 134 SEEKKNRCNYKKLGCLFESFLGALFLDTNETQDELFLMGNGIQYCQLFIENVFNKLVDWT 193

Query: 151 GKFRRD--AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI------------- 195
                D   K   Q     +F  TPEYK+  +   D + R+T+ V +             
Sbjct: 194 EILENDDNYKNIFQVKIQKEFKCTPEYKIIQQ---DEELRYTMGVYLYLNSKDTSSTKFE 250

Query: 196 -----------SGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                      + +    G+   K+ AEQ+A  + LK+
Sbjct: 251 LIKNLEHIKPNTNVHFGTGVHKIKKKAEQLACLDALKK 288


>gi|328696730|ref|XP_003240109.1| PREDICTED: endoribonuclease dcr-1-like isoform 2 [Acyrthosiphon
            pisum]
          Length = 1648

 Score =  139 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 52/193 (26%), Positives = 85/193 (44%), Gaps = 35/193 (18%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            Y  LE+RIGY+F ++ LL +ALTH +    + E Y+RLEFLGD IL  LI+T +  H   
Sbjct: 1391 YELLERRIGYSFKHKHLLAQALTHPTYQFGFSECYQRLEFLGDAILDFLITTYIIEHCYH 1450

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD----------LRKDVCSFM---- 111
               GE++   +SLV+  T + ++  + L  FI   S             +   +      
Sbjct: 1451 KTPGEITDIRSSLVNNITFASLSARIGLHRFILAKSVQMTEAIDRFYEHQQKNNHKIGQE 1510

Query: 112  ------------------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKS-- 150
                                +  D+ ESLIAA+YLD   ++   + +   + ++ +K   
Sbjct: 1511 VLYLIEESDCYAAESVDVPKVLGDLFESLIAAIYLDCNRDLNFVWAICYRFLEKEIKEFC 1570

Query: 151  GKFRRDAKTELQE 163
                ++    L E
Sbjct: 1571 DNVPKNPIRILHE 1583



 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 31/59 (52%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
            +YER+E  GD  L   +S +LF+ F S  EG L+     LV       V R L+L S++
Sbjct: 1169 NYERMETYGDSFLKFAVSLVLFDAFPSDNEGVLTELKMKLVGNRNLLYVGRNLNLGSYL 1227


>gi|240275432|gb|EER38946.1| ATP-dependent helicase DCL1 [Ajellomyces capsulatus H143]
          Length = 495

 Score =  139 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 55/251 (21%), Positives = 97/251 (38%), Gaps = 44/251 (17%)

Query: 12  RIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           R+GY F    LL  A TH+S   + S    Y+RLEFLGD +L ++    L++H+      
Sbjct: 156 RLGYHFTYPRLLRSAFTHASYPSAWSTVPCYQRLEFLGDSLLDMVCVEYLYHHYPDRDPQ 215

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSI-------------- 114
            L+    ++VS +    V  +L L   +  +S+ L   +  +   I              
Sbjct: 216 WLTEHKMAMVSNKFLGAVTVKLGLHKHLLYISNALFGQITRYAEEIEVAVAESADSPDAW 275

Query: 115 ---------QADVVESLIAALYLDG--GIEVAGTF----VDKYWKQRALKSGKFRRDAKT 159
                      D++E+ I A+++D     EV   F    + +Y++  ++      +   T
Sbjct: 276 TTTSDPPKCLPDMLEAYIGAIFVDSNFSFEVVEDFFQRYLKQYFEDMSVYDAFANKHPTT 335

Query: 160 ELQEWAHAKFGVTPEY-------KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
                    FG    Y       ++   +    +PR    V +     AQG+  S R A+
Sbjct: 336 YFHNRLTIDFGCA-NYCLKAGEVQMVDST----EPRIYAAVIVHDKFVAQGIASSVRYAK 390

Query: 213 QVAAAEVLKRE 223
             A+   L + 
Sbjct: 391 TKASEAALAKL 401



 Score = 39.7 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 31/99 (31%), Gaps = 20/99 (20%)

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASF---------------I 97
           +  S  LF       E +  V+   L+  +     A  L L  F               I
Sbjct: 1   MATSISLFAMNPDNDEFDFHVKRMCLICNQNLFNTAVRLKLYEFVRTQGFSRRNWYPEGI 60

Query: 98  RVSSDLRKDVCSFM-----TSIQADVVESLIAALYLDGG 131
           ++     K   +           AD+ E+LI A  L GG
Sbjct: 61  KLLQGKAKSESAQNKQALGDKTIADICEALIGASLLSGG 99


>gi|328696732|ref|XP_001945890.2| PREDICTED: endoribonuclease dcr-1-like isoform 1 [Acyrthosiphon
            pisum]
          Length = 1691

 Score =  139 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 52/193 (26%), Positives = 85/193 (44%), Gaps = 35/193 (18%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            Y  LE+RIGY+F ++ LL +ALTH +    + E Y+RLEFLGD IL  LI+T +  H   
Sbjct: 1434 YELLERRIGYSFKHKHLLAQALTHPTYQFGFSECYQRLEFLGDAILDFLITTYIIEHCYH 1493

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD----------LRKDVCSFM---- 111
               GE++   +SLV+  T + ++  + L  FI   S             +   +      
Sbjct: 1494 KTPGEITDIRSSLVNNITFASLSARIGLHRFILAKSVQMTEAIDRFYEHQQKNNHKIGQE 1553

Query: 112  ------------------TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKS-- 150
                                +  D+ ESLIAA+YLD   ++   + +   + ++ +K   
Sbjct: 1554 VLYLIEESDCYAAESVDVPKVLGDLFESLIAAIYLDCNRDLNFVWAICYRFLEKEIKEFC 1613

Query: 151  GKFRRDAKTELQE 163
                ++    L E
Sbjct: 1614 DNVPKNPIRILHE 1626



 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 31/59 (52%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
            +YER+E  GD  L   +S +LF+ F S  EG L+     LV       V R L+L S++
Sbjct: 1212 NYERMETYGDSFLKFAVSLVLFDAFPSDNEGVLTELKMKLVGNRNLLYVGRNLNLGSYL 1270


>gi|289425710|ref|ZP_06427468.1| RNase3 domain protein [Propionibacterium acnes SK187]
 gi|289153883|gb|EFD02586.1| RNase3 domain protein [Propionibacterium acnes SK187]
          Length = 146

 Score =  139 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 39/126 (30%), Positives = 65/126 (51%), Gaps = 3/126 (2%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFN 61
           + ++ L + +G        L  ALTH S ++   +  + ERLEFLGD +LGL +++ L+ 
Sbjct: 20  VDHTPLLESLGVDLQ-PEHLRLALTHRSFANENGHLPNNERLEFLGDAVLGLSVASQLYI 78

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + S  E ++S    S+VS    S +ARE++L   I +    +        SI AD  E+
Sbjct: 79  TYPSRPESDISKMRASIVSRYGLSDIAREINLGPHILLGKGEQSTGGRDKDSILADTTEA 138

Query: 122 LIAALY 127
           +  A+Y
Sbjct: 139 IFGAIY 144


>gi|317150438|ref|XP_001824024.2| dicer-like protein 1 [Aspergillus oryzae RIB40]
 gi|158706453|sp|Q2U6C4|DCL1_ASPOR RecName: Full=Dicer-like protein 1; Includes: RecName:
            Full=Endoribonuclease dcl1; Includes: RecName:
            Full=ATP-dependent helicase dcl1
          Length = 1523

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 57/255 (22%), Positives = 100/255 (39%), Gaps = 39/255 (15%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDS 65
             +E+++GY F    LL  A TH S   ++ +   Y+RLEFLGD +L ++    LF  +  
Sbjct: 1243 KVEEKLGYRFKYPRLLHSAFTHPSYPSTWAKVPCYQRLEFLGDSLLDMVCVDDLFYRYPD 1302

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFMTSI---------- 114
                 L+    ++VS +    +A +L L + +R  S+ L+  +  +   I          
Sbjct: 1303 KDPQWLTEHKMAMVSNKFLGALAVKLGLHTHLRHFSNPLQSQITHYAEEIQAAENESQGA 1362

Query: 115  -------------QADVVESLIAALYLDGGIE--VAGTF----VDKYWKQRALKSGKFRR 155
                           D+VE+ + A ++D   +  V   F    V  Y+    +      +
Sbjct: 1363 VDYWLVTKDPPKCLPDMVEAYLGAAFVDSDFQFRVVEDFFQRHVKSYFHDMTIYDTFANK 1422

Query: 156  DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP---RFTVVVEISGLAPAQGMDCSKRAAE 212
               T LQ     ++G T  Y +     P  D         V +  +  A+G   S R A+
Sbjct: 1423 HPTTFLQNRLTNEYGCT-NYCLKAGEIPVVDGGTVSVLAAVIVHEVVIAEGTASSGRYAK 1481

Query: 213  QVAAAEV---LKREG 224
              A+ +    L+  G
Sbjct: 1482 VKASEKALSVLENMG 1496



 Score = 68.6 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 50/147 (34%), Gaps = 34/147 (23%)

Query: 20   RSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
                 +A T        H      +     ++YERLEFLGD  L +  S  LF       
Sbjct: 1045 PEYALEAFTKDSDNTEEHRVQQIHVQRGMGKNYERLEFLGDCFLKMATSISLFVQNPDDD 1104

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASF-----------------IRVSSDLRKDVCSF 110
            E +  V    L+  +     A + +L  +                 +    D RK + + 
Sbjct: 1105 EFDFHVNRMCLICNKNLFNTALKKELYQYTRSRGFSRHTWYPDGLTLLHGRDHRKKISAE 1164

Query: 111  -----MTSIQADVVESLIAALYLDGGI 132
                      ADV E+LI A  L GG+
Sbjct: 1165 SKHALREKTVADVCEALIGASLLSGGL 1191


>gi|251765118|sp|Q6ATG6|RTL2_ORYSJ RecName: Full=Ribonuclease 3-like protein 2; AltName:
           Full=Ribonuclease III-like protein 2; Short=RNase
           III-like protein 2
          Length = 317

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 100/242 (41%), Gaps = 32/242 (13%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + +E+ + Y F +  LLE+ALTH S +     SY+RLEF+GD  LGL  S  L+    + 
Sbjct: 38  ARVERLLRYQFRDGRLLEEALTHQSFADDAV-SYQRLEFVGDSALGLAFSNFLYLTNPTL 96

Query: 67  KEGELSVRFNSLVSAETCSQVARELDL---------------ASFIRVSSDLRKD----- 106
             G LS    + +S E  ++VA   DL                 FI       +D     
Sbjct: 97  GPGPLSTLRAANISTEKLARVAVRHDLYPLLRRNCPRLDLLVGQFIETVKQEPEDDLSTV 156

Query: 107 --VCSFM--TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTEL 161
               S +    + AD+VE++ AA+Y+D   ++   + V ++  +  + +        T L
Sbjct: 157 PYGGSVVKAPKVLADIVEAIAAAVYVDCKFDLEKLWKVTRWLFEPIITAETIDEQPVTML 216

Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            E       +  ++K   + G        V V ++G     G    K  A+  AA +  +
Sbjct: 217 HELCQKHGKMA-QFKTWQKGGMT-----VVNVFVAGELVGIGSSEQKVIAKLNAARDATR 270

Query: 222 RE 223
           + 
Sbjct: 271 KL 272


>gi|18402610|ref|NP_566661.1| RTL2 (RNASE THREE-LIKE PROTEIN 2); double-stranded RNA binding /
           ribonuclease III [Arabidopsis thaliana]
 gi|75274109|sp|Q9LTQ0|RTL2_ARATH RecName: Full=Ribonuclease 3-like protein 2; AltName:
           Full=Ribonuclease III-like protein 2; Short=RNase
           III-like protein 2; AltName: Full=Ribonuclease
           three-like protein 2
 gi|9294562|dbj|BAB02825.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642855|gb|AEE76376.1| RNAse THREE-like protein 2 [Arabidopsis thaliana]
          Length = 391

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 110/246 (44%), Gaps = 33/246 (13%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M ++    +EK + Y F+N+SLL++A+TH+S +     SYERLEF+GD  +GL IS  L+
Sbjct: 57  MESM--EAVEKILNYKFSNKSLLKEAITHTSCTD--FPSYERLEFIGDSAIGLAISNYLY 112

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR----------------VSSDLR 104
             + S +  +LS+   + VS E  ++V+    L SF+R                V  +  
Sbjct: 113 LTYPSLEPHDLSLLRAANVSTEKLARVSLNHGLYSFLRRNAPSLDEKVKEFSEAVGKEDD 172

Query: 105 KDVCSFM----TSIQADVVESLIAALYLDGGIEVAGTFVD-KYWKQRALKSGKFRR--DA 157
             V          + AD+ ESL  A+Y+D   ++   +V  +   +  +     ++    
Sbjct: 173 LSVSYGGLVKAPKVLADLFESLAGAVYVDVNFDLQRLWVIFRGLLEPIVTLDDLQKQPQP 232

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
            + L +  H         ++  ++  D +     V+ +     A G   +K  A  +AA 
Sbjct: 233 VSMLFKLCHKHKK-----RIDIKNWKDGN-VSIAVIYLDDELLASGRAENKDIARLIAAK 286

Query: 218 EVLKRE 223
           E L++ 
Sbjct: 287 EALRKL 292



 Score = 40.8 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 33/104 (31%), Gaps = 8/104 (7%)

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           L    E      + +  +  +           AKT+L E    K    P Y V       
Sbjct: 282 LIAAKEALRKLSEVFPVEMVIDEDSVEIQLTHAKTKLNEICLKKKWPKPIYSVEEDRSSV 341

Query: 185 HDPRFTVVVEI----SGLAPAQGMDCSK-RAAEQVAAAEVLKRE 223
              RF    +I          +G + SK + AE  +A  +++  
Sbjct: 342 QGKRFVCSAKIKITEEKTLYMKGDEQSKIKKAESSSAYHMIRAL 385


>gi|238881386|gb|EEQ45024.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 611

 Score =  138 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 60/230 (26%), Positives = 95/230 (41%), Gaps = 30/230 (13%)

Query: 18  ANRSLLEKALTHSS---------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            N  L E+   H S          +H      ERLEF GD IL  L + ++F  F  + E
Sbjct: 243 NNPKLFERVFIHKSTVNNKQYLEANHLLHSHNERLEFYGDSILNNLATLIIFKEFPDSTE 302

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFI--RVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           G+LS   + LVS +T  ++A +      +  R+S D+ K        I ADV E+ I AL
Sbjct: 303 GDLSKIRSKLVSNKTLIKIAFQYGFDKKLRSRISDDVLKTGD---KKIFADVFEAYIGAL 359

Query: 127 YLDGGIEV--AGTFVDKYWKQRALK------SGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
            ++ G ++     ++ K +     +           R+AK++L      +  + P Y   
Sbjct: 360 AMERGFDLEDVKEWLAKVYAPLIHELKIEYIEEPIDREAKSKLYGLI-GQDDLHPVYNTL 418

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA------EVLKR 222
                 H+  F V   I+G    +G   + + A   AA       EVLK+
Sbjct: 419 QMGDGIHNK-FIVQCTINGEELGRGTANNLKEAGLRAAMAGLNNNEVLKK 467



 Score = 45.1 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 4/75 (5%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
           ++     DAK +L      K G  P Y  +  +G      F VV+ + G+   +  D SK
Sbjct: 524 ENEPLDIDAKNKLYGILGRKIGDKPAYLTSQINGN----LFKVVLCVRGITICEATDPSK 579

Query: 209 RAAEQVAAAEVLKRE 223
           + A   AA  +L+ E
Sbjct: 580 KKAMARAAQTLLENE 594


>gi|68477460|ref|XP_717201.1| probable ribonuclease III [Candida albicans SC5314]
 gi|46438903|gb|EAK98227.1| probable ribonuclease III [Candida albicans SC5314]
          Length = 611

 Score =  138 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 59/230 (25%), Positives = 95/230 (41%), Gaps = 30/230 (13%)

Query: 18  ANRSLLEKALTHSS---------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            +  L E+   H S          +H      ERLEF GD IL  L + ++F  F  + E
Sbjct: 243 NDPKLFERVFIHKSTVNNKQYLEANHLLHSHNERLEFYGDSILNNLATLIIFKEFPDSTE 302

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFI--RVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           G+LS   + LVS +T  ++A +      +  R+S D+ K        I ADV E+ I AL
Sbjct: 303 GDLSKIRSKLVSNKTLIKIAFQYGFDKKLRSRISDDVLKTGD---KKIFADVFEAYIGAL 359

Query: 127 YLDGGIEV--AGTFVDKYWKQRALK------SGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
            ++ G ++     ++ K +     +           R+AK++L      +  + P Y   
Sbjct: 360 AMERGFDLEDVKEWLAKVYAPLIHELKIEYIEEPIDREAKSKLYGLI-GQDDLHPVYNTL 418

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA------EVLKR 222
                 H+  F V   I+G    +G   + + A   AA       EVLK+
Sbjct: 419 QMGDGIHNK-FIVQCTINGEELGRGTANNLKEAGLRAAMAGLNNNEVLKK 467



 Score = 42.8 bits (100), Expect = 0.040,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 4/75 (5%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
           ++     DAK +L      K G  P Y  +  +G      F VV+ I G+   +  D SK
Sbjct: 524 ENEPLDIDAKNKLYGILGRKIGDKPAYLTSQINGN----LFKVVLCIRGITICETTDPSK 579

Query: 209 RAAEQVAAAEVLKRE 223
           + A   AA  +L+ E
Sbjct: 580 KKAMARAAQTLLENE 594


>gi|326481629|gb|EGE05639.1| hypothetical protein TEQG_04648 [Trichophyton equinum CBS 127.97]
          Length = 1519

 Score =  138 bits (349), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 51/251 (20%), Positives = 89/251 (35%), Gaps = 38/251 (15%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHFD 64
            + ++ ++GY F    LL  A  H S          Y+RLEFLGD +L ++    LF  + 
Sbjct: 1236 NQIQSKLGYCFKYPKLLRSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMVCVNHLFERYP 1295

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------------S 100
                  L+    ++VS +    +A  L+L   +                           
Sbjct: 1296 DKDPQWLTEHKMAMVSNKFLGSLAVNLNLHVHLIHISNTLQGQITSYTEELQAMKIKMEG 1355

Query: 101  SDLRKDVCSFMTSIQADVVESLIAALYLDGGI------EVAGTFVDKYWKQRALKSGKFR 154
            +       +       D+VE+ + A+++D         E    F+  Y++  ++      
Sbjct: 1356 NLEAWTYTNEPPKCLPDIVEAYLGAIFVDSNFNFDVVDEFFRKFIQHYFEDMSVYDTFAN 1415

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV----VVEISGLAPAQGMDCSKRA 210
            +   T L       FG T  Y +     P  D   TV     V +     A+G+  S R 
Sbjct: 1416 KHPITFLHTRLAVDFGCTF-YALKADEIPCVDGT-TVRALAAVCVHDDIVAEGVASSPRH 1473

Query: 211  AEQVAAAEVLK 221
            A+  A+   L+
Sbjct: 1474 AKLKASQNALQ 1484



 Score = 65.9 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 63/195 (32%), Gaps = 47/195 (24%)

Query: 20   RSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
              L  +ALT  S                  ++YERLEFLGD  L +  S  LF       
Sbjct: 1040 PELALEALTKDSENTEEHGMEQIRFQSGMGKNYERLEFLGDCFLKMATSISLFAMNPDND 1099

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIR---------------VSSDLRKDVCSFMT 112
            E +  V+   L+  +     A  L++  FIR               +     K       
Sbjct: 1100 EYDYHVKRMLLICNQNLFNNAIILEIFKFIRSRSFSRRAWYPEGLTLLKGKDKKEGPNGP 1159

Query: 113  ------SIQADVVESLIAALYLDGG----IEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162
                     ADV E+LI A  L GG     ++A   V  +      +  K+  D      
Sbjct: 1160 EHALADKTIADVCEALIGASLLAGGPDHKFDMATKAVTVFVNSDDHRVEKWA-DY----- 1213

Query: 163  EWAHAKFGVTPEYKV 177
                ++    P Y+ 
Sbjct: 1214 ----SRLYSLPNYQT 1224


>gi|326472405|gb|EGD96414.1| dicer [Trichophyton tonsurans CBS 112818]
          Length = 1519

 Score =  138 bits (348), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 51/251 (20%), Positives = 89/251 (35%), Gaps = 38/251 (15%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHFD 64
            + ++ ++GY F    LL  A  H S          Y+RLEFLGD +L ++    LF  + 
Sbjct: 1236 NQIQSKLGYCFKYPKLLRSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMVCVNHLFERYP 1295

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------------S 100
                  L+    ++VS +    +A  L+L   +                           
Sbjct: 1296 DKDPQWLTEHKMAMVSNKFLGSLAVNLNLHVHLIHISNTLQGQITSYTEELQAMKIKMEG 1355

Query: 101  SDLRKDVCSFMTSIQADVVESLIAALYLDGGI------EVAGTFVDKYWKQRALKSGKFR 154
            +       +       D+VE+ + A+++D         E    F+  Y++  ++      
Sbjct: 1356 NLEAWTYTNEPPKCLPDIVEAYLGAIFVDSNFNFDVVDEFFRKFIQHYFEDMSVYDTFAN 1415

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV----VVEISGLAPAQGMDCSKRA 210
            +   T L       FG T  Y +     P  D   TV     V +     A+G+  S R 
Sbjct: 1416 KHPITFLHTRLAVDFGCTF-YALKADEIPCVDGT-TVRALAAVCVHDDIVAEGVASSPRH 1473

Query: 211  AEQVAAAEVLK 221
            A+  A+   L+
Sbjct: 1474 AKLKASQNALQ 1484



 Score = 65.5 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 63/195 (32%), Gaps = 47/195 (24%)

Query: 20   RSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
              L  +ALT  S                  ++YERLEFLGD  L +  S  LF       
Sbjct: 1040 PELALEALTKDSENTEEHGMEQIRFQSGMGKNYERLEFLGDCFLKMATSISLFAMNPDND 1099

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIR---------------VSSDLRKDVCSFMT 112
            E +  V+   L+  +     A  L++  FIR               +     K       
Sbjct: 1100 EYDYHVKRMLLICNQNLFNNAIILEIFKFIRSRSFSRRAWYPEGLTLLKGKDKKEGPNGP 1159

Query: 113  ------SIQADVVESLIAALYLDGG----IEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162
                     ADV E+LI A  L GG     ++A   V  +      +  K+  D      
Sbjct: 1160 EHALADKTIADVCEALIGASLLAGGPDHKFDMATKAVTVFVNSDDHRVEKWA-DY----- 1213

Query: 163  EWAHAKFGVTPEYKV 177
                ++    P Y+ 
Sbjct: 1214 ----SRLYSLPNYQT 1224


>gi|68477301|ref|XP_717277.1| probable ribonuclease III [Candida albicans SC5314]
 gi|46438981|gb|EAK98304.1| probable ribonuclease III [Candida albicans SC5314]
          Length = 611

 Score =  138 bits (348), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 59/230 (25%), Positives = 95/230 (41%), Gaps = 30/230 (13%)

Query: 18  ANRSLLEKALTHSS---------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            +  L E+   H S          +H      ERLEF GD IL  L + ++F  F  + E
Sbjct: 243 NDPKLFERVFIHKSTVNNKQYLEANHLLHSHNERLEFYGDSILNNLATLIIFKEFPDSTE 302

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFI--RVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           G+LS   + LVS +T  ++A +      +  R+S D+ K        I ADV E+ I AL
Sbjct: 303 GDLSKIRSKLVSNKTLIKIAFQYGFDKKLRSRISDDVLKTGD---KKIFADVFEAYIGAL 359

Query: 127 YLDGGIEV--AGTFVDKYWKQRALK------SGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
            ++ G ++     ++ K +     +           R+AK++L      +  + P Y   
Sbjct: 360 AMERGFDLEDVKEWLAKVYAPLIHELKIEYIEEPIDREAKSKLYGLI-GQDDLHPVYNTL 418

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA------EVLKR 222
                 H+  F V   I+G    +G   + + A   AA       EVLK+
Sbjct: 419 QMGDGIHNK-FIVQCTINGEELGRGTANNLKEAGLRAAMAGLNNNEVLKK 467



 Score = 45.1 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 4/75 (5%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
           ++     DAK +L      K G  P Y  +  +G      F VV+ + G+   +  D SK
Sbjct: 524 ENEPLDIDAKNKLYGILGRKIGDKPAYLTSQINGN----LFKVVLCVRGITICEATDPSK 579

Query: 209 RAAEQVAAAEVLKRE 223
           + A   AA  +L+ E
Sbjct: 580 KKAMARAAQTLLENE 594


>gi|17511264|gb|AAK68755.2| Unknown protein [Arabidopsis thaliana]
 gi|20148705|gb|AAM10243.1| unknown protein [Arabidopsis thaliana]
          Length = 391

 Score =  138 bits (348), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 110/246 (44%), Gaps = 33/246 (13%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M ++    +EK + Y F+N+SLL++A+TH+S +     SYERLEF+GD  +GL IS  L+
Sbjct: 57  MESM--EAVEKILNYKFSNKSLLKEAVTHTSCTD--FPSYERLEFIGDSAIGLAISNYLY 112

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR----------------VSSDLR 104
             + S +  +LS+   + VS E  ++V+    L SF+R                V  +  
Sbjct: 113 LTYPSLEPHDLSLLRAANVSTEKLARVSLNHGLYSFLRRNAPSLDEKVKEFSEAVGKEDD 172

Query: 105 KDVCSFM----TSIQADVVESLIAALYLDGGIEVAGTFVD-KYWKQRALKSGKFRR--DA 157
             V          + AD+ ESL  A+Y+D   ++   +V  +   +  +     ++    
Sbjct: 173 LSVSYGGLVKAPKVLADLFESLAGAVYVDVNFDLQRLWVIFRGLLEPIVTLDDLQKQPQP 232

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
            + L +  H         ++  ++  D +     V+ +     A G   +K  A  +AA 
Sbjct: 233 VSMLFKLCHKHKK-----RIDIKNWKDGN-VSIAVIYLDDELLASGRAENKDIARLIAAK 286

Query: 218 EVLKRE 223
           E L++ 
Sbjct: 287 EALRKL 292



 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 33/104 (31%), Gaps = 8/104 (7%)

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFR---RDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           L    E      + +  +  +           AKT+L E    K    P Y V       
Sbjct: 282 LIAAKEALRKLSEVFPVEMVIDEDSVEIQLTHAKTKLNEICLKKKWPKPIYSVEEDRSSV 341

Query: 185 HDPRFTVVVEI----SGLAPAQGMDCSK-RAAEQVAAAEVLKRE 223
              RF    +I          +G + SK + AE  +A  +++  
Sbjct: 342 QGKRFVCSAKIKITEEKTLYMKGDEQSKIKKAESSSAYHMIRAL 385


>gi|224613141|dbj|BAH24245.1| dsRNA-specific ribonuclease RNaseIII [Korean potato witches'-broom
           phytoplasma]
          Length = 163

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 64/152 (42%), Gaps = 3/152 (1%)

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           ++ +    V  ++    A+E+ L ++I +    +K   +   SI +D  E+L  A+YLD 
Sbjct: 5   MTKKRAQAVCIDSLFIYAKEIKLKNYILLGKGEKKRYDN-NYSIISDAFEALFGAIYLDL 63

Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           G                LK      D KT+LQE           YK+    G  H+  F 
Sbjct: 64  GFNQTQKIFHNIVLP-YLKKVINIIDFKTKLQELIQTNRH-NINYKIVSEQGLAHEKEFI 121

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             V +      +GM  +K+A+EQ AA + L +
Sbjct: 122 TEVYLEEQFLGRGMGKTKKASEQKAAQQALIK 153


>gi|225561826|gb|EEH10106.1| dicer-like protein [Ajellomyces capsulatus G186AR]
          Length = 1502

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 58/240 (24%), Positives = 95/240 (39%), Gaps = 41/240 (17%)

Query: 12   RIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
            R+GY F    LL  A TH+S   + S    Y+RLEFLGD +L ++    L++H+      
Sbjct: 1245 RLGYYFTYPRLLRSAFTHASYPSAWSTVPCYQRLEFLGDSLLDMVCVEHLYHHYPDRDPQ 1304

Query: 70   ELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSI-------------- 114
             L+    ++VS +    VA +L L   +  +S+ L   +  +   I              
Sbjct: 1305 WLTEHKMAMVSNKFLGAVAVKLGLHKHLLYISNALFGQITRYAEEIEVAVAESADSPDAW 1364

Query: 115  ---------QADVVESLIAALYLDG--GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQE 163
                       D++E+ I A+++D     EV   F  +Y KQ       +  DA      
Sbjct: 1365 TTTSDPPKCLPDMLEAYIGAIFVDSNFSFEVVEDFFQRYLKQYFEDMSIY--DA------ 1416

Query: 164  WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                K     E ++   +    +PR    V +     AQG+  S R A+  A+   L + 
Sbjct: 1417 -FANKHPTAGEVQMVDST----EPRIYAAVIVHDKFVAQGIASSVRYAKTKASEAALAKL 1471



 Score = 68.6 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/143 (25%), Positives = 49/143 (34%), Gaps = 32/143 (22%)

Query: 21   SLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
             L  +ALT        H            ++YERLEFLGD  L +  S  LF       E
Sbjct: 1046 HLALEALTKDSDNTEEHRKEQIHFQRGMGKNYERLEFLGDCFLKMATSISLFAMNPDNDE 1105

Query: 69   GELSVRFNSLVSAETCSQVARELDLASF---------------IRVSSDLRKDVCSFM-- 111
             +  V+   L+  +     A  L L  F               I++     K   +    
Sbjct: 1106 FDFHVKRMCLICNQNLFNTAVRLKLYEFVRTQGFSRRNWYPEGIKLLQGKAKSESAQNKQ 1165

Query: 112  ---TSIQADVVESLIAALYLDGG 131
                   AD+ E+LI A  L GG
Sbjct: 1166 ALGDKTIADICEALIGASLLSGG 1188


>gi|327297344|ref|XP_003233366.1| dicer-like protein 1 [Trichophyton rubrum CBS 118892]
 gi|326464672|gb|EGD90125.1| dicer-like protein 1 [Trichophyton rubrum CBS 118892]
          Length = 1519

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 50/251 (19%), Positives = 89/251 (35%), Gaps = 38/251 (15%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHFD 64
            + ++ ++GY F    LL  A  H S          Y+RLEFLGD +L ++    LF  + 
Sbjct: 1236 NQIQSKLGYCFKYPKLLRSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMVCVNHLFERYP 1295

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------------S 100
                  L+    ++VS +    +A  L+L   +                           
Sbjct: 1296 DKDPQWLTEHKMAMVSNKFLGSLAVSLNLHVHLIHISNTLQGQITSYTEELQAMKIKMEG 1355

Query: 101  SDLRKDVCSFMTSIQADVVESLIAALYLDGGI------EVAGTFVDKYWKQRALKSGKFR 154
            +       +       D+VE+ + A+++D         +    F+  Y++  ++      
Sbjct: 1356 NLEAWTYTNEPPKCLPDIVEAYLGAIFVDSNFNFDVVDDFFRKFIQHYFEDMSVYDTFAN 1415

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV----VVEISGLAPAQGMDCSKRA 210
            +   T L       FG T  Y +     P  D   TV     V +     A+G+  S R 
Sbjct: 1416 KHPITFLHTRLAVDFGCTF-YALKADEIPCVDGT-TVRALAAVCVHDDIVAEGVASSPRH 1473

Query: 211  AEQVAAAEVLK 221
            A+  A+   L+
Sbjct: 1474 AKLKASQNALQ 1484



 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 50/147 (34%), Gaps = 33/147 (22%)

Query: 20   RSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
              L  +ALT  S                  ++YERLEFLGD  L +  S  LF       
Sbjct: 1040 PELALEALTKDSENTEEHGMEQIRFQSGMGKNYERLEFLGDCFLKMATSISLFAMNPDND 1099

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIR---------------VSSDLRKDVCSFMT 112
            E +  V+   L+  +     A  L++  FIR               +     K       
Sbjct: 1100 EYDYHVKRMLLICNQNLFNNAINLEIFKFIRSRSFSRRAWYPEGLTLLKGKDKKEGPNGP 1159

Query: 113  ------SIQADVVESLIAALYLDGGIE 133
                     ADV E+LI A  L GG +
Sbjct: 1160 EHALADKTIADVCEALIGASLLAGGPD 1186


>gi|238499729|ref|XP_002381099.1| dicer-1, putative [Aspergillus flavus NRRL3357]
 gi|220692852|gb|EED49198.1| dicer-1, putative [Aspergillus flavus NRRL3357]
          Length = 605

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 56/255 (21%), Positives = 99/255 (38%), Gaps = 39/255 (15%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDS 65
            +E+++GY F    LL  A TH S   ++ +   Y+RLEFLGD +L ++    LF  +  
Sbjct: 325 KVEEKLGYRFKYPRLLHSAFTHPSYPSTWAKVPCYQRLEFLGDSLLDMVCVDDLFYRYPD 384

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFMTSI---------- 114
                L+    ++ S +    +A +L L + +R  S+ L+  +  +   I          
Sbjct: 385 KDPQWLTEHKMAMASNKFLGALAVKLGLHTHLRHFSNPLQSQITHYAEEIQAAENESQGA 444

Query: 115 -------------QADVVESLIAALYLDGGIE--VAGTF----VDKYWKQRALKSGKFRR 155
                          D+VE+ + A ++D   +  V   F    V  Y+    +      +
Sbjct: 445 VDYWLVTKDPPKCLPDMVEAYLGAAFVDSDFQFRVVEDFFQRHVKSYFHDMTIYDTFANK 504

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP---RFTVVVEISGLAPAQGMDCSKRAAE 212
              T LQ     ++G T  Y +     P  D         V +  +  A+G   S R A+
Sbjct: 505 HPTTFLQNRLTNEYGCT-NYCLKAGEIPVVDGGTVSVLAAVIVHEVVIAEGTASSGRYAK 563

Query: 213 QVAAAEV---LKREG 224
             A+ +    L+  G
Sbjct: 564 VKASEKALSVLENMG 578



 Score = 69.3 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 51/147 (34%), Gaps = 34/147 (23%)

Query: 20  RSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            +   +A T        H      +     ++YERLEFLGD  L +  S  LF       
Sbjct: 127 PAYALEAFTKDSDNTEEHRVQQIHVQRGMGKNYERLEFLGDCFLKMATSISLFVQNPDDD 186

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRK----- 105
           E +  V    L+  +     A + +L  +IR                    D RK     
Sbjct: 187 EFDFHVNRMCLICNKNLFNTALKKELYQYIRSRGFSRHTWYPDGLTLLHGRDHRKKVSAE 246

Query: 106 DVCSFMTSIQADVVESLIAALYLDGGI 132
              +      ADV E+LI A  L GG+
Sbjct: 247 SKHALREKTVADVCEALIGASLLSGGL 273


>gi|302662009|ref|XP_003022664.1| hypothetical protein TRV_03185 [Trichophyton verrucosum HKI 0517]
 gi|291186623|gb|EFE42046.1| hypothetical protein TRV_03185 [Trichophyton verrucosum HKI 0517]
          Length = 1510

 Score =  137 bits (347), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 50/251 (19%), Positives = 89/251 (35%), Gaps = 38/251 (15%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHFD 64
            + ++ ++GY F    LL  A  H S          Y+RLEFLGD +L ++    LF  + 
Sbjct: 1227 NQIQSKLGYCFKYPKLLRSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMVCVNHLFERYP 1286

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------------S 100
                  L+    ++VS +    +A  L+L   +                           
Sbjct: 1287 DKDPQWLTEHKMAMVSNKFLGSLAVSLNLHVHLIHISNTLQGQITSYTEELQAMKIKMEG 1346

Query: 101  SDLRKDVCSFMTSIQADVVESLIAALYLDGGI------EVAGTFVDKYWKQRALKSGKFR 154
            +       +       D+VE+ + A+++D         +    F+  Y++  ++      
Sbjct: 1347 NLEAWTYTNEPPKCLPDIVEAYLGAIFVDSNFNFDVVDDFFRKFIQHYFEDMSVYDTFAN 1406

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV----VVEISGLAPAQGMDCSKRA 210
            +   T L       FG T  Y +     P  D   TV     V +     A+G+  S R 
Sbjct: 1407 KHPITFLHTRLAVDFGCTF-YALKADEIPCVDGT-TVRALAAVCVHDDIVAEGVASSPRH 1464

Query: 211  AEQVAAAEVLK 221
            A+  A+   L+
Sbjct: 1465 AKLKASQNALQ 1475



 Score = 65.9 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 63/195 (32%), Gaps = 47/195 (24%)

Query: 20   RSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
              L  +ALT  S                  ++YERLEFLGD  L +  S  LF       
Sbjct: 1031 PELALEALTKDSENTEEHGMEQIRFQSGMGKNYERLEFLGDCFLKMATSISLFAMNPDND 1090

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIR---------------VSSDLRKDVCSFMT 112
            E +  V+   L+  +     A  L++  FIR               +     K       
Sbjct: 1091 EYDYHVKRMLLICNQNLFNNAIILEIFKFIRSRSFSRRAWYPEGLTLLKGKDKKEGPNGP 1150

Query: 113  ------SIQADVVESLIAALYLDGG----IEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162
                     ADV E+LI A  L GG     ++A   V  +      +  K+  D      
Sbjct: 1151 EHALADKTIADVCEALIGASLLAGGPDHKFDMATKAVTVFVNSDDHRVEKWA-DY----- 1204

Query: 163  EWAHAKFGVTPEYKV 177
                ++    P Y+ 
Sbjct: 1205 ----SRLYSLPNYQT 1215


>gi|295132160|ref|YP_003582836.1| ribonuclease III [Zunongwangia profunda SM-A87]
 gi|294980175|gb|ADF50640.1| putative ribonuclease III [Zunongwangia profunda SM-A87]
          Length = 197

 Score =  137 bits (347), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 8/171 (4%)

Query: 39  SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
           +YERLEFLGD +LG +I++ L+       EG L+   + +VS +  +++ ++L+L  F++
Sbjct: 10  NYERLEFLGDAMLGSVIASHLYQEVPEGDEGYLTKMRSKIVSRKHLNELGKDLNLIRFVK 69

Query: 99  VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR---R 155
             S++  D   F  +I  ++ E+L+ A+YLD G +    F+     +  +          
Sbjct: 70  --SNIPND--QFGVNIHGNIFEALVGAIYLDRGYKYCNRFIYNRVIEPYVDIETLEGRVI 125

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206
             K+ L EW   +      Y+V   +G D    F V + I     A+    
Sbjct: 126 SYKSLLIEWCQKQKKE-FNYQVYEDTGRDELKHFAVKLWIDKKVIAKARAT 175


>gi|302511053|ref|XP_003017478.1| hypothetical protein ARB_04359 [Arthroderma benhamiae CBS 112371]
 gi|291181049|gb|EFE36833.1| hypothetical protein ARB_04359 [Arthroderma benhamiae CBS 112371]
          Length = 1510

 Score =  137 bits (347), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 50/251 (19%), Positives = 89/251 (35%), Gaps = 38/251 (15%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHFD 64
            + ++ ++GY F    LL  A  H S          Y+RLEFLGD +L ++    LF  + 
Sbjct: 1227 NQIQSKLGYCFKYPKLLRSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMVCVNHLFERYP 1286

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------------S 100
                  L+    ++VS +    +A  L+L   +                           
Sbjct: 1287 DKDPQWLTEHKMAMVSNKFLGSLAVSLNLHVHLIHISNTLQGQITSYTEELQAMKIKMEG 1346

Query: 101  SDLRKDVCSFMTSIQADVVESLIAALYLDGGI------EVAGTFVDKYWKQRALKSGKFR 154
            +       +       D+VE+ + A+++D         +    F+  Y++  ++      
Sbjct: 1347 NLEAWTYTNEPPKCLPDIVEAYLGAIFVDSNFNFDVVDDFFRKFIQHYFEDMSVYDTFAN 1406

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV----VVEISGLAPAQGMDCSKRA 210
            +   T L       FG T  Y +     P  D   TV     V +     A+G+  S R 
Sbjct: 1407 KHPITFLHTRLAVDFGCTF-YALKADEIPCVDGT-TVRALAAVCVHDDIVAEGVASSPRH 1464

Query: 211  AEQVAAAEVLK 221
            A+  A+   L+
Sbjct: 1465 AKLKASQNALQ 1475



 Score = 65.9 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 63/195 (32%), Gaps = 47/195 (24%)

Query: 20   RSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
              L  +ALT  S                  ++YERLEFLGD  L +  S  LF       
Sbjct: 1031 PELALEALTKDSENTEEHGMEQIRFQSGMGKNYERLEFLGDCFLKMATSISLFAMNPDND 1090

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIR---------------VSSDLRKDVCSFMT 112
            E +  V+   L+  +     A  L++  FIR               +     K       
Sbjct: 1091 EYDYHVKRMLLICNQNLFNNAIILEIFKFIRSRSFSRRAWYPEGLTLLKGKDKKEGPNGP 1150

Query: 113  ------SIQADVVESLIAALYLDGG----IEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162
                     ADV E+LI A  L GG     ++A   V  +      +  K+  D      
Sbjct: 1151 EHALADKTIADVCEALIGASLLAGGPDHKFDMATKAVTVFVNSDDHRVEKWA-DY----- 1204

Query: 163  EWAHAKFGVTPEYKV 177
                ++    P Y+ 
Sbjct: 1205 ----SRLYSLPNYQT 1215


>gi|242090101|ref|XP_002440883.1| hypothetical protein SORBIDRAFT_09g013160 [Sorghum bicolor]
 gi|241946168|gb|EES19313.1| hypothetical protein SORBIDRAFT_09g013160 [Sorghum bicolor]
          Length = 377

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 61/241 (25%), Positives = 100/241 (41%), Gaps = 32/241 (13%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            +E+ + Y F +R+LLE+ALTH S S     SY+RLEF+GD  LGL  S  L+    +  
Sbjct: 44  RVERLLRYQFCDRALLEEALTHQSFSDGAF-SYQRLEFVGDAALGLAFSNFLYLTNPTLG 102

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIR---------VSSDLRK------------- 105
            G LS    + +S E  ++VA   DL   +R         V   +               
Sbjct: 103 PGALSTLRAANISTEKLARVAVRHDLYPLLRRKCARLDLLVGQFIESVKQEVMHDLATAP 162

Query: 106 DVCSFM--TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTELQ 162
              S +    + AD+VE++ AA+Y+D   ++   + V ++  +  + +        T L 
Sbjct: 163 YGGSVVKAPKVLADIVEAIAAAVYVDCKFDLEKLWKVTRWLFEPVITAETVDEQPVTTLH 222

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E       V  +++   + G        V V + G     G    K  A+  AA + L +
Sbjct: 223 ELCQKHGKVA-QFETWQKGGMT-----MVNVFVGGEMVGLGSSEQKVIAKLNAARDALGK 276

Query: 223 E 223
            
Sbjct: 277 L 277



 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 46/132 (34%), Gaps = 14/132 (10%)

Query: 94  ASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153
              + + S  +K +            ++L     L GG       +        +     
Sbjct: 251 GEMVGLGSSEQKVIAK-----LNAARDALGK---LIGG--AKQQVLINGIANGLVDEIVE 300

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS---GLAPAQGMDCSK-R 209
            R+ K +L E    K    P +K+    GP H+  F   V++    G     G   S+ +
Sbjct: 301 LRECKQKLTEQCIGKHWPKPIFKLEKEGGPAHERNFVCSVQVDTKTGTFVTIGDPMSRVK 360

Query: 210 AAEQVAAAEVLK 221
            AE  AA ++++
Sbjct: 361 DAENSAAQKMVE 372


>gi|219558950|ref|ZP_03538026.1| ribonuclease III [Mycobacterium tuberculosis T17]
 gi|289571114|ref|ZP_06451341.1| ribonuclease III rnc [Mycobacterium tuberculosis T17]
 gi|289544868|gb|EFD48516.1| ribonuclease III rnc [Mycobacterium tuberculosis T17]
          Length = 139

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/130 (34%), Positives = 67/130 (51%), Gaps = 6/130 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSA 66
           L   +G    +  LL  ALTH S ++      + ERLEFLGD +LGL I+  LF+     
Sbjct: 8   LLDALGVDLPD-ELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDR 66

Query: 67  KEGELSVRFNSLVSAETCSQVAREL---DLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            EG+L+    S+V+ +  + VAR L    L   + +         +  +SI AD +ESL+
Sbjct: 67  SEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADGMESLL 126

Query: 124 AALYLDGGIE 133
            A+YL  G+E
Sbjct: 127 GAIYLQHGME 136


>gi|307198394|gb|EFN79336.1| Endoribonuclease dcr-1 [Harpegnathos saltator]
          Length = 1479

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 49/215 (22%), Positives = 87/215 (40%), Gaps = 50/215 (23%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
            ++EKR+GY F NR+ L +A TH S S +   + Y+RLEFLGD +L  LI+  ++    + 
Sbjct: 1278 SIEKRLGYKFNNRAYLLQAFTHPSYSVNRITDCYQRLEFLGDAVLDFLITCHIYEFCGNL 1337

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSF--------------- 110
              G L+   ++LV+  T + +A    L + +   +  L + +  F               
Sbjct: 1338 SPGALTDLRSALVNNITFACLAVRYGLHTCLLAYAPQLHEMINRFVKFQEDRNYAINDEL 1397

Query: 111  -----------------MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153
                             +  +  D+ E+LI A+YLD    +A  + +  +     +  +F
Sbjct: 1398 LWVLLEEEDCNIAEYIDVPKVLGDLFETLIGAIYLDSNRNLAKVW-EMVYSFMHKEIDEF 1456

Query: 154  RRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
             R+  K              P  +V +     H  
Sbjct: 1457 SRNVPK-------------NPV-RVIYEHQDAHAK 1477



 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 26/61 (42%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
            + ERLE LGD  L  + S  L++ F    EG+L+     ++             +   ++
Sbjct: 1068 NLERLETLGDSYLKFITSLFLYHTFPMLSEGQLTAIKGRIIGNRNLYYNGVNKGIPGRLK 1127

Query: 99   V 99
            +
Sbjct: 1128 I 1128


>gi|224613121|dbj|BAH24228.1| dsRNA-specific ribonuclease RNaseIII [Paulownia witches'-broom
           phytoplasma]
          Length = 157

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 3/141 (2%)

Query: 82  ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141
            + +  A+ ++L +++ +     K+      SI AD  E+L  A+YLD G   A      
Sbjct: 1   RSLTIYAQNIELQNYLLLGKGE-KNKDFNAKSIMADTFEALFGAIYLDLGYLTAKKVFHN 59

Query: 142 YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201
                 L    +  D KT+LQE   ++     +YK+    GP H  +F   V +      
Sbjct: 60  IVLPH-LAKTIYIIDFKTQLQEIVQSEKKA-IQYKIVQEQGPAHSKKFVAEVYLEKNLLG 117

Query: 202 QGMDCSKRAAEQVAAAEVLKR 222
            G   +K+AAEQ AA + L +
Sbjct: 118 TGEGSTKKAAEQKAAHQALSK 138


>gi|302772092|ref|XP_002969464.1| hypothetical protein SELMODRAFT_91347 [Selaginella moellendorffii]
 gi|300162940|gb|EFJ29552.1| hypothetical protein SELMODRAFT_91347 [Selaginella moellendorffii]
          Length = 1255

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 62/252 (24%), Positives = 105/252 (41%), Gaps = 50/252 (19%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            M AL   +LEK + Y F N++LL +A+TH+S +      Y+RLEF+GD +L  L++  LF
Sbjct: 1005 MPALL--SLEKELCYTFQNKALLLEAITHAS-TPDTVFCYQRLEFIGDAVLDFLVTRHLF 1061

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS----------- 109
                    G LS   ++ V+ +  ++VA +  L S++R  S   +   +           
Sbjct: 1062 TSHPGLSPGLLSDLRSASVNNDCLARVAVKHRLHSYLRHGSAELRAKINSFLDVLDRDPE 1121

Query: 110  ----------FMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRD-- 156
                            AD+VES+  A+ +D G +    + V K      +          
Sbjct: 1122 CSVMFGFKALSGPKALADIVESVAGAILVDSGFDFEKLWVVLKRLLSPFVTPATLSFHPV 1181

Query: 157  --------AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
                     K+   EW  +  G T E  +  ++G     RFT   E+S +        +K
Sbjct: 1182 REFHELCSYKSWEFEWVQSSSGATAE--ILLKAGE---QRFT---EVSSI-------KNK 1226

Query: 209  RAAEQVAAAEVL 220
            + A +  A ++L
Sbjct: 1227 KDARKDVAEKLL 1238



 Score = 61.6 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 54/158 (34%), Gaps = 45/158 (28%)

Query: 39  SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
           SYE LE LGD +L   ++  L+    +  EGELS R +  +   T  ++A   DL  ++R
Sbjct: 829 SYEGLELLGDSVLKYAVTRKLYLLHSTMHEGELSDRRSHAICNSTLRKLAVAQDLPMYVR 888

Query: 99  ---------VSSDLRKDVCS------------------------------------FMTS 113
                    V + + +                                          + 
Sbjct: 889 DEPFYPSYWVGAGMYRQRSRKCCCRLDNLVTKESSKPRPTDATYYVGKTCGQGHRWMCSK 948

Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151
             +D +E+LI A  + GG + A  F+          SG
Sbjct: 949 TTSDALEALIGAYTVGGGFDGALEFMKALQVDVDFDSG 986


>gi|296809942|ref|XP_002845309.1| dicer-like protein 1 [Arthroderma otae CBS 113480]
 gi|238842697|gb|EEQ32359.1| dicer-like protein 1 [Arthroderma otae CBS 113480]
          Length = 1521

 Score =  135 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 50/251 (19%), Positives = 88/251 (35%), Gaps = 38/251 (15%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHFD 64
            + +E+++GY F    LL  A  H S          Y+RLEFLGD +L +     LF  + 
Sbjct: 1238 NQIEEKLGYRFKYPKLLRSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMACVNHLFTKYP 1297

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------------S 100
                  L+    ++VS +    +A  L+L   +                           
Sbjct: 1298 DKDPQWLTEHKMAMVSNKFLGSLAVGLNLHVHLIHISNVLQGQITCYTEELQAMKMEMGG 1357

Query: 101  SDLRKDVCSFMTSIQADVVESLIAALYLDGGI------EVAGTFVDKYWKQRALKSGKFR 154
            +       +       D+VE+ + A+++D         +    F+  Y++   +      
Sbjct: 1358 NLEAWTYTNEPPKCLPDIVEAYLGAIFVDSNFNFDVIDDFFKRFIQHYFEDMTVYDTFAN 1417

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV----VVEISGLAPAQGMDCSKRA 210
            +   T L       FG T  Y +     P  D   T+     V +     A+G+  S R 
Sbjct: 1418 KHPITFLHTRLAVDFGCTF-YALKADEIPCVDGT-TIRALAAVCVHNDIVAEGVATSPRH 1475

Query: 211  AEQVAAAEVLK 221
            A+  A+   L+
Sbjct: 1476 AKLKASQNALQ 1486



 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 53/147 (36%), Gaps = 33/147 (22%)

Query: 20   RSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
              L  +ALT  S                  ++YERLEFLGD  L +  S  LF       
Sbjct: 1042 PELALEALTKDSENTEEHGLEQIRFQSGMGKNYERLEFLGDCFLKMATSISLFAMNPDND 1101

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDVC-- 108
            E +  V+   L+  +     A  L++  +IR                    D +++    
Sbjct: 1102 EYDFHVKRMLLICNQNLFNNAIILEVFKYIRSKSFSRRGWYPEGLTLLKGKDKKENPGGP 1161

Query: 109  --SFMTSIQADVVESLIAALYLDGGIE 133
              +      ADV E+LI A  L GG +
Sbjct: 1162 THALADKSIADVCEALIGASLLAGGPD 1188


>gi|302755618|ref|XP_002961233.1| hypothetical protein SELMODRAFT_74321 [Selaginella moellendorffii]
 gi|300172172|gb|EFJ38772.1| hypothetical protein SELMODRAFT_74321 [Selaginella moellendorffii]
          Length = 1291

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 62/252 (24%), Positives = 105/252 (41%), Gaps = 50/252 (19%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            M AL   +LEK + Y F N++LL +A+TH+S +      Y+RLEF+GD +L  L++  LF
Sbjct: 1041 MPALL--SLEKELCYTFQNKALLLEAITHAS-TPDTVFCYQRLEFIGDAVLDFLVTRHLF 1097

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS----------- 109
                    G LS   ++ V+ +  ++VA +  L S++R  S   +   +           
Sbjct: 1098 TSHPGLSPGLLSDLRSASVNNDCLARVAVKHRLHSYLRHGSAELRAKITSFLDVLDRDPE 1157

Query: 110  ----------FMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRD-- 156
                            AD+VES+  A+ +D G +    + V K      +          
Sbjct: 1158 CSVMFGFKALSGPKALADIVESVAGAILVDSGFDFEKLWVVLKRLLSPFVTPATLSFHPV 1217

Query: 157  --------AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
                     K+   EW  +  G T E  +  ++G     RFT   E+S +        +K
Sbjct: 1218 REFHELCSYKSWEFEWVQSSSGATAE--ILLKAGE---QRFT---EVSSI-------KNK 1262

Query: 209  RAAEQVAAAEVL 220
            + A +  A ++L
Sbjct: 1263 KDARKDVAEKLL 1274



 Score = 61.6 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 54/158 (34%), Gaps = 45/158 (28%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
            SYE LE LGD +L   ++  L+    +  EGELS R +  +   T  ++A   DL  ++R
Sbjct: 865  SYEGLELLGDSVLKYAVTRKLYLLHSTMHEGELSDRRSHAICNSTLRKLAVAQDLPMYVR 924

Query: 99   ---------VSSDLRKDVCS------------------------------------FMTS 113
                     V + + +                                          + 
Sbjct: 925  DEPFYPSCWVGAGMYRQRSRKCCCRLDNLVTKESSKPRPTDATYYVGKTCGQGHRWMCSK 984

Query: 114  IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151
              +D +E+LI A  + GG + A  F+          SG
Sbjct: 985  TTSDALEALIGAYAVGGGFDGALEFMKALQVDVDFDSG 1022


>gi|222619725|gb|EEE55857.1| hypothetical protein OsJ_04485 [Oryza sativa Japonica Group]
          Length = 1839

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 62/243 (25%), Positives = 104/243 (42%), Gaps = 33/243 (13%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +  LE ++GY+F+ + LL +ALTH S      +  YERLEFLGD +L +L++  LFN   
Sbjct: 1175 FEMLEAKLGYSFSVKGLLVEALTHPSQQELGAKYCYERLEFLGDAVLDILLTRYLFNSHK 1234

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD---------------------- 102
               EGEL+   ++ V+ E  +QVA + +   F++ SS                       
Sbjct: 1235 DTNEGELTDLRSASVNNENFAQVAVKHNFHHFLQHSSGLLLDQITEYVNRLEGSSMDKVE 1294

Query: 103  LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTEL 161
            L  D       +  D+VES+  A+ LD  +++   + + +      +           EL
Sbjct: 1295 LLSDGLPKGPKVLGDIVESIAGAILLDTKLDLDVVWGIFEPLLSPIVTPENLELPPYREL 1354

Query: 162  QEWAHAKFGVTPEYKVTFRSGPDHDPRF-TVVVEISGLAPAQGMDCSK--RAAEQVAAAE 218
             EW          Y V        D    T+ V++  +   +    SK  + A+  A++ 
Sbjct: 1355 IEWCGKHG-----YFVGINCRDQGDTVVATLDVQLKEVLLVR-QGFSKKRKDAKAHASSL 1408

Query: 219  VLK 221
            +LK
Sbjct: 1409 LLK 1411



 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 62/180 (34%), Gaps = 60/180 (33%)

Query: 7    STLEKRIGYAFANRS--LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            S L   IGY+ +N S  L+ +A+T  ++  S   S ERLE LGD +L             
Sbjct: 978  SQLRSEIGYSDSNISSFLILEAIT--TLRCSEDFSMERLELLGDSVLKY----------- 1024

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-------------------------- 98
             A EG+LS     ++   T  ++  E ++  ++R                          
Sbjct: 1025 -ADEGQLSSIRCHMICNATLYKLGIERNVQGYVRDAAFDPRRWLAPGQLSIRPSPCECPV 1083

Query: 99   ------------------VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140
                              +     K      +   AD VE++I A Y  GG+  A   + 
Sbjct: 1084 KSEVVTDDIHIIDDKAIVLGKACDKGHRWMCSKTIADCVEAIIGAYYAGGGLRAAMAVLK 1143


>gi|218189575|gb|EEC72002.1| hypothetical protein OsI_04862 [Oryza sativa Indica Group]
          Length = 1858

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 62/243 (25%), Positives = 104/243 (42%), Gaps = 33/243 (13%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +  LE ++GY+F+ + LL +ALTH S      +  YERLEFLGD +L +L++  LFN   
Sbjct: 1175 FEMLEAKLGYSFSVKGLLVEALTHPSQQELGAKYCYERLEFLGDAVLDILLTRYLFNSHK 1234

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD---------------------- 102
               EGEL+   ++ V+ E  +QVA + +   F++ SS                       
Sbjct: 1235 DTNEGELTDLRSASVNNENFAQVAVKHNFHHFLQHSSGLLLDQITEYVNRLEGSSMDKVE 1294

Query: 103  LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTEL 161
            L  D       +  D+VES+  A+ LD  +++   + + +      +           EL
Sbjct: 1295 LLSDGLPKGPKVLGDIVESIAGAILLDTKLDLDVVWGIFEPLLSPIVTPENLELPPYREL 1354

Query: 162  QEWAHAKFGVTPEYKVTFRSGPDHDPRF-TVVVEISGLAPAQGMDCSK--RAAEQVAAAE 218
             EW          Y V        D    T+ V++  +   +    SK  + A+  A++ 
Sbjct: 1355 IEWCGKHG-----YFVGINCRDQGDTVVATLDVQLKEVLLVR-QGFSKKRKDAKAHASSL 1408

Query: 219  VLK 221
            +LK
Sbjct: 1409 LLK 1411



 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 61/180 (33%), Gaps = 60/180 (33%)

Query: 7    STLEKRIGYAFANRS--LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            S L   IGY+ +N S  L+ +A+T  ++  S   S ERLE LGD +L             
Sbjct: 978  SQLRSEIGYSDSNISSFLILEAIT--TLRCSEDFSMERLELLGDSVLKY----------- 1024

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-------------------------- 98
             A EG+LS     ++   T  ++  E ++  ++R                          
Sbjct: 1025 -ADEGQLSSIRCHMICNATLYKLGIERNVQGYVRDAAFDPRRWLAPGQLSIRPSPCECPV 1083

Query: 99   ------------------VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140
                              +     K      +   AD  E++I A Y  GG+  A   + 
Sbjct: 1084 KSEVVTDDIHIIDDKAIVLGKACDKGHRWMCSKTIADCFEAIIGAYYAGGGLRAAMAVLK 1143


>gi|115441737|ref|NP_001045148.1| Os01g0909200 [Oryza sativa Japonica Group]
 gi|75321191|sp|Q5N870|DCL3A_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 3a; AltName:
            Full=Dicer-like protein 3a; Short=OsDCL3a
 gi|56785369|dbj|BAD82327.1| putative Endoribonuclease Dicer homolog [Oryza sativa Japonica Group]
 gi|113534679|dbj|BAF07062.1| Os01g0909200 [Oryza sativa Japonica Group]
          Length = 1651

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 62/243 (25%), Positives = 104/243 (42%), Gaps = 33/243 (13%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +  LE ++GY+F+ + LL +ALTH S      +  YERLEFLGD +L +L++  LFN   
Sbjct: 1241 FEMLEAKLGYSFSVKGLLVEALTHPSQQELGAKYCYERLEFLGDAVLDILLTRYLFNSHK 1300

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD---------------------- 102
               EGEL+   ++ V+ E  +QVA + +   F++ SS                       
Sbjct: 1301 DTNEGELTDLRSASVNNENFAQVAVKHNFHHFLQHSSGLLLDQITEYVNRLEGSSMDKVE 1360

Query: 103  LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTEL 161
            L  D       +  D+VES+  A+ LD  +++   + + +      +           EL
Sbjct: 1361 LLSDGLPKGPKVLGDIVESIAGAILLDTKLDLDVVWGIFEPLLSPIVTPENLELPPYREL 1420

Query: 162  QEWAHAKFGVTPEYKVTFRSGPDHDPRF-TVVVEISGLAPAQGMDCSK--RAAEQVAAAE 218
             EW          Y V        D    T+ V++  +   +    SK  + A+  A++ 
Sbjct: 1421 IEWCGKHG-----YFVGINCRDQGDTVVATLDVQLKEVLLVR-QGFSKKRKDAKAHASSL 1474

Query: 219  VLK 221
            +LK
Sbjct: 1475 LLK 1477



 Score = 72.0 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 42/180 (23%), Positives = 67/180 (37%), Gaps = 48/180 (26%)

Query: 7    STLEKRIGYAFANRS--LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            S L   IGY+ +N S  L+ +A+T  ++  S   S ERLE LGD +L   +S  LF  F 
Sbjct: 1032 SQLRSEIGYSDSNISSFLILEAIT--TLRCSEDFSMERLELLGDSVLKYAVSCHLFLKFP 1089

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-------------------------- 98
            +  EG+LS     ++   T  ++  E ++  ++R                          
Sbjct: 1090 NKDEGQLSSIRCHMICNATLYKLGIERNVQGYVRDAAFDPRRWLAPGQLSIRPSPCECPV 1149

Query: 99   ------------------VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140
                              +     K      +   AD VE++I A Y  GG+  A   + 
Sbjct: 1150 KSEVVTDDIHIIDDKAIVLGKACDKGHRWMCSKTIADCVEAIIGAYYAGGGLRAAMAVLK 1209


>gi|261749614|ref|YP_003257300.1| ribonuclease III [Blattabacterium sp. (Periplaneta americana) str.
           BPLAN]
 gi|261497707|gb|ACX84157.1| ribonuclease III [Blattabacterium sp. (Periplaneta americana) str.
           BPLAN]
          Length = 251

 Score =  134 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 100/231 (43%), Gaps = 18/231 (7%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALT------HSSISHSYQESYERLEFLGDRILGLLI 55
           +++  S L+K +G+   N  LL+            ++  +Y   ++RLEFLGD +L  +I
Sbjct: 14  NSILVSRLKKILGFCPKNLKLLKDVFIYSFSTKRKTLDKNYFLDFQRLEFLGDAVLNSII 73

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S  L       KEGEL+   + +V  +  ++++++L LA         + +      +I 
Sbjct: 74  SHFLCEKLPEKKEGELTQVRSKIVCRKNLNEISKKLTLAEVF-----FQNNQPIISENIL 128

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD---AKTELQEWAHAKFGVT 172
            + +E+LI  +YL+ G +    FV K      +   + + +    K  + EW+     + 
Sbjct: 129 GNTLEALIGFIYLEIGYQGCKNFVYKKILHYHVNITQLQNEISSYKVWVIEWSQKNKFII 188

Query: 173 --PEYKVTFRSGPD-HDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEV 219
               ++ T     + H   +     IS      +G   SK+ +E++AA   
Sbjct: 189 NFNTFRETKEEIENKHVITYFSEFTISRCGIKTEGRGPSKKKSEEMAAKAA 239


>gi|326533632|dbj|BAK05347.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 381

 Score =  134 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 60/246 (24%), Positives = 102/246 (41%), Gaps = 37/246 (15%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64
           + +E+ + Y F +RSLL++ALTH S S       SY+RLEF+GD  LGL  S  L+    
Sbjct: 44  ARVERLLQYRFRDRSLLDEALTHQSFSGGAGGAASYQRLEFVGDAALGLAFSNFLYLTNP 103

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIR----------------VSSDLRKDVC 108
           +   G LS    + +S E  ++VA   DL   +R                V  +L  D+ 
Sbjct: 104 TVGPGALSTLRAANISTEKLARVAVRHDLYPLLRRNCPRLDLLVGQFIESVKQELEDDLG 163

Query: 109 --------SFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKT 159
                        + AD+VE++ AA+Y+D    +   + V ++  +  + +        +
Sbjct: 164 ITPYGGSVFKAPKVLADIVEAIAAAVYVDCKFNIEELWKVTRFLFEPIVTAETIDEQPVS 223

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR--AAEQVAAA 217
            L E          ++K   + G        V V + G+    G   S++   A+  A  
Sbjct: 224 TLHELCQKHGK-DIKFKSWQKGGTT-----VVNVFVGGVLV--GTGSSEQMGIAKLNATR 275

Query: 218 EVLKRE 223
           + L + 
Sbjct: 276 DALSKL 281



 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSK-RAAEQ 213
           K +L +  + K    P +K+    GP HD  F   V++    G+    G   S+ + AE 
Sbjct: 309 KKKLIDQCNRKLWPKPIFKLEKEDGPAHDRTFVYSVQVETQGGIWLTLGDRMSRVKDAEN 368

Query: 214 VAAAEVLKRE 223
             A ++L+  
Sbjct: 369 SGAQKMLEHL 378


>gi|154283385|ref|XP_001542488.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150410668|gb|EDN06056.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 1359

 Score =  134 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 57/240 (23%), Positives = 94/240 (39%), Gaps = 41/240 (17%)

Query: 12   RIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
            R+GY F    LL  A TH+S   + S    Y+RLEFLGD +L ++    L++H+      
Sbjct: 1102 RLGYHFTYPRLLRSAFTHASYPSAWSTVPCYQRLEFLGDSLLDMVCVEYLYHHYPDRDPQ 1161

Query: 70   ELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSI-------------- 114
             L+    ++VS +    V  +L L   +  +S+ L   +  +   I              
Sbjct: 1162 WLTEHKMAMVSNKFLGAVTVKLGLHKHLLYISNALFGQITRYAEEIEVAVAESADSPDAW 1221

Query: 115  ---------QADVVESLIAALYLDG--GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQE 163
                       D++E+ I A+++D     EV   F  +Y KQ       +  DA      
Sbjct: 1222 TTTSDPPKCLPDMLEAYIGAIFVDSNFSFEVVEDFFQRYLKQYFEDMSIY--DA------ 1273

Query: 164  WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                K     E ++   +    +PR    V +     AQG+  S R A+  A+   L + 
Sbjct: 1274 -FANKHPTAGEVQMVDST----EPRIYAAVIVHDKFVAQGIASSVRYAKTKASDAALAKL 1328



 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 49/143 (34%), Gaps = 32/143 (22%)

Query: 21   SLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
             L  +ALT        H            ++YERLEFLGD  L +  S  LF       E
Sbjct: 903  HLALEALTKDSDNTEEHRKEQIHFQRGMGKNYERLEFLGDCFLKMATSISLFAMNPDNDE 962

Query: 69   GELSVRFNSLVSAETCSQVARELDLASF---------------IRVSSDLRKDVCSFM-- 111
             +  V+   L+  +     A  L L  F               I++     +   +    
Sbjct: 963  FDFHVKRMCLICNQNLFNTAVRLKLYEFVRTQGFSRRNWYPEGIKLLQGKAQPESAQNKQ 1022

Query: 112  ---TSIQADVVESLIAALYLDGG 131
                   AD+ E+LI A  L GG
Sbjct: 1023 ALGDKTIADICEALIGASLLSGG 1045


>gi|326497771|dbj|BAK05975.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 379

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 60/246 (24%), Positives = 102/246 (41%), Gaps = 37/246 (15%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64
           + +E+ + Y F +RSLL++ALTH S S       SY+RLEF+GD  LGL  S  L+    
Sbjct: 42  ARVERLLQYRFRDRSLLDEALTHQSFSGGAGGAASYQRLEFVGDAALGLAFSNFLYLTNP 101

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIR----------------VSSDLRKDVC 108
           +   G LS    + +S E  ++VA   DL   +R                V  +L  D+ 
Sbjct: 102 TVGPGALSTLRAANISTEKLARVAVRHDLYPLLRRNCPRLDLLVGQFIESVKQELEDDLG 161

Query: 109 --------SFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKT 159
                        + AD+VE++ AA+Y+D    +   + V ++  +  + +        +
Sbjct: 162 ITPYGGSVFKAPKVLADIVEAIAAAVYVDCKFNIEELWKVTRFLFEPIVTAETIDEQPVS 221

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR--AAEQVAAA 217
            L E          ++K   + G        V V + G+    G   S++   A+  A  
Sbjct: 222 TLHELCQKHGK-DIKFKSWQKGGTT-----VVNVFVGGVLV--GTGSSEQMGIAKLNATR 273

Query: 218 EVLKRE 223
           + L + 
Sbjct: 274 DALSKL 279



 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSK-RAAEQ 213
           K +L +  + K    P +K+    GP HD  F   V++    G+    G   S+ + AE 
Sbjct: 307 KKKLIDQCNRKLWPKPIFKLEKEDGPAHDRTFVYSVQVETQGGIWLTLGDRMSRVKDAEN 366

Query: 214 VAAAEVLKRE 223
             A ++L+  
Sbjct: 367 SGAQKMLEHL 376


>gi|301107618|ref|XP_002902891.1| ribonuclease 3, putative [Phytophthora infestans T30-4]
 gi|262098009|gb|EEY56061.1| ribonuclease 3, putative [Phytophthora infestans T30-4]
          Length = 312

 Score =  134 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 85/187 (45%), Gaps = 16/187 (8%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQES-------YERLEFLGDRILGLLIS 56
              L++RIG  F + +LL+ ALTH     ++   E           LEFLGD +LG   +
Sbjct: 123 LEKLQERIGVKFQDVTLLQSALTHHGCLPTNPVPEDVPVVRLSNRSLEFLGDSLLGAAAA 182

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC-----SFM 111
             ++      +EG+LS   ++LV+ +T S+++ +L +   +       +           
Sbjct: 183 GYVYQMLPRHQEGQLSRAKSALVNNDTLSKISADLGITDLLLWPPGFNEARGAPLVAKGR 242

Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKF 169
            +I A  VESLIAA+YLD G+E A  FV      R+++        +   ELQ      +
Sbjct: 243 VTIAAGSVESLIAAIYLDQGMETAMKFVTTQILPRSVEYATRDVIWEPIVELQNLLQGHY 302

Query: 170 GVTPEYK 176
              P YK
Sbjct: 303 YGQPVYK 309


>gi|312384317|gb|EFR29067.1| hypothetical protein AND_02261 [Anopheles darlingi]
          Length = 1651

 Score =  134 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 33/168 (19%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNH 62
            +    +E+ +GY F NR+ L +A TH++ + ++  +SYE+LEFLGD +L  LI+  +F  
Sbjct: 1399 INPEKIERTVGYKFRNRTFLLQAFTHATYTTNTLTKSYEQLEFLGDAVLDFLITLYIFER 1458

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI---------RVSSDLRKDVCSFM-- 111
                  G+L+   ++LV+  T + V     L  +I         ++   +          
Sbjct: 1459 NPHMSPGQLTDLRSALVNNVTLACVLVRFRLHHYILSQSPMLTDKIDKFVEVQGQKRNRI 1518

Query: 112  ---------------------TSIQADVVESLIAALYLDGGIEVAGTF 138
                                   +  DV E+LI A+YLD G ++  T+
Sbjct: 1519 GDWVRLLTEESETPLAEYVDVPKVLGDVFEALIGAIYLDSGCDLVTTW 1566



 Score = 51.2 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 2/69 (2%)

Query: 25   KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
            +ALT  S       + ER E LGD  L   +S  L     +  EG L+     +VS    
Sbjct: 1179 QALT--SKHAHDVFNLERFELLGDAFLKFSVSAFLLMRHVTWHEGYLTTCKGRMVSNRNL 1236

Query: 85   SQVARELDL 93
               A +  L
Sbjct: 1237 LYCAMQYGL 1245


>gi|325091272|gb|EGC44582.1| ATP-dependent helicase DCL1 [Ajellomyces capsulatus H88]
          Length = 1432

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 56/240 (23%), Positives = 93/240 (38%), Gaps = 41/240 (17%)

Query: 12   RIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
            R+GY F    LL  A TH+S   + S    Y+RLEFLGD +L ++    L++H+      
Sbjct: 1175 RLGYHFTYPRLLRSAFTHASYPSAWSTVPCYQRLEFLGDSLLDMVCVEYLYHHYPDRDPQ 1234

Query: 70   ELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSI-------------- 114
             L+    ++VS +    V  +L L   +  +S+ L   +  +   I              
Sbjct: 1235 WLTEHKMAMVSNKFLGAVTVKLGLHKHLLYISNALFGQITRYAEEIEVAVAESADSPDAW 1294

Query: 115  ---------QADVVESLIAALYLDG--GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQE 163
                       D++E+ I A+++D     EV   F  +Y KQ       +  DA      
Sbjct: 1295 TTTSDPPKCLPDMLEAYIGAIFVDSNFSFEVVEDFFQRYLKQYFEDMSIY--DA------ 1346

Query: 164  WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                K     E ++   +    + R    V +     AQG+  S R A+  A+   L + 
Sbjct: 1347 -FANKHPTAGEVQMVDST----ETRIYAAVIVHDKFVAQGIASSVRYAKTKASEAALAKL 1401



 Score = 68.6 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/143 (25%), Positives = 49/143 (34%), Gaps = 32/143 (22%)

Query: 21   SLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
             L  +ALT        H            ++YERLEFLGD  L +  S  LF       E
Sbjct: 976  HLALEALTKDSDNTEEHRKEQIHFQRGMGKNYERLEFLGDCFLKMATSISLFAMNPDNDE 1035

Query: 69   GELSVRFNSLVSAETCSQVARELDLASF---------------IRVSSDLRKDVCSFM-- 111
             +  V+   L+  +     A  L L  F               I++     K   +    
Sbjct: 1036 FDFHVKRMCLICNQNLFNTAVRLKLYEFVRTQGFSRRNWYPEGIKLLQGKAKSESAQNKQ 1095

Query: 112  ---TSIQADVVESLIAALYLDGG 131
                   AD+ E+LI A  L GG
Sbjct: 1096 ALGDKTIADICEALIGASLLSGG 1118


>gi|299754132|ref|XP_002911949.1| type III restriction enzyme [Coprinopsis cinerea okayama7#130]
 gi|298410618|gb|EFI28455.1| type III restriction enzyme [Coprinopsis cinerea okayama7#130]
          Length = 1457

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 60/248 (24%), Positives = 104/248 (41%), Gaps = 45/248 (18%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            + TL++R+GY F + S+L +A+TH S + +   SY+RLEFLGD IL L++   L+  F  
Sbjct: 1121 FDTLQERLGYTFHSNSILVEAVTHPSFA-TDGPSYQRLEFLGDAILDLVVVHYLYEKFPE 1179

Query: 66   AKEGELSVRFNSLVSAETCSQVA-RELDLASFIRVSS------------------DLRKD 106
            A   +LS+    ++ A T + +A +EL +   + +++                  D    
Sbjct: 1180 ANSHQLSLLRAKVICAPTLAYLAIKELGVHKILLINNMGLYRAIEAYVPVFEDITDEEIA 1239

Query: 107  VCSFM---TSIQADVVESLIAALYLDGGIE------VAGTFVDKYWKQRALKSGKFRRDA 157
               +        +DV ESL+ A+ +D G        V    + K   Q +L      +D 
Sbjct: 1240 RSYYKFDPPKAISDVFESLVGAVLVDSGYNYDKTSAVVLDIMSKVLDQLSLDMA---KDP 1296

Query: 158  KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT----VVVEISGL-APAQGMDCSKRAAE 212
             + L EW          +          + +F     VV+E+ G       +  S   A+
Sbjct: 1297 VSLLLEWVAQHGCREISF--------SKNRKFNYDAGVVLEVHGKQVVGPIVASSPGVAK 1348

Query: 213  QVAAAEVL 220
             +A+   L
Sbjct: 1349 FIASERAL 1356



 Score = 82.8 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 19/140 (13%)

Query: 13   IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            +   F    +L ++LT    +     S +RLE LGD +L L  +  LFN + +  EG+L+
Sbjct: 949  LRLPFIEDKILIESLTIP--AALLAFSNQRLETLGDAVLQLCTTVHLFNQYPNRHEGQLT 1006

Query: 73   VRFNSLVSAETCSQVARELDLASFI------------RVSSDLRKDVCSFMTSI-----Q 115
                + VS +   Q A E+ L  +I             +  D        + ++      
Sbjct: 1007 TLRRATVSNKFLLQRALEMGLEEYITVEIASVARWRYILGEDADTAPPRSVRTLVPRRSL 1066

Query: 116  ADVVESLIAALYLDGGIEVA 135
             D +E+L+ A +L GGI +A
Sbjct: 1067 QDCMEALLGASFLQGGIPMA 1086


>gi|242059623|ref|XP_002458957.1| hypothetical protein SORBIDRAFT_03g043355 [Sorghum bicolor]
 gi|241930932|gb|EES04077.1| hypothetical protein SORBIDRAFT_03g043355 [Sorghum bicolor]
          Length = 1651

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 53/185 (28%), Positives = 80/185 (43%), Gaps = 24/185 (12%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHFDSAK 67
            LE ++GY F  + LL +ALTH S   S     Y+RLEFLGD +L +LI+  LF       
Sbjct: 1245 LEAKLGYTFQVKGLLIEALTHPSQQESGATYCYQRLEFLGDAVLDILITRHLFLSHKDTD 1304

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIRVSSD----------------------LRK 105
            EGEL+   ++ V+ E  +QVA + +L  F++ SS                       L  
Sbjct: 1305 EGELTDLRSASVNNENFAQVAVKHNLHQFLQHSSGFLQDQITEYVNSLEGSSMDRTSLLS 1364

Query: 106  DVCSFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTELQEW 164
               S    +  D+VES+  A+ +D  +++   + V K      +           EL EW
Sbjct: 1365 SGPSRGPKVLGDIVESIAGAILIDSKLDLDLVWRVFKPLLSPIVTPENLELPPFRELNEW 1424

Query: 165  AHAKF 169
                 
Sbjct: 1425 CDKNG 1429



 Score = 65.9 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 57/159 (35%), Gaps = 45/159 (28%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
            S ERLE LGD +L   +S  LF  F +  EG+LS R    +   T  ++  E  +  +IR
Sbjct: 1066 SMERLELLGDSVLKYAVSAHLFMTFLNKHEGQLSSRRQETICNATLYRLGTERRIQGYIR 1125

Query: 99   --------------------------------------------VSSDLRKDVCSFMTSI 114
                                                        +     K      +  
Sbjct: 1126 DAAFDPRRWLAPGQLSSRPCPCECPVKSEVITEDIHRIDDKSIIIGKACDKGHRWICSKT 1185

Query: 115  QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153
             +D VE++I A Y++GG++ A   V K+ +   L+  + 
Sbjct: 1186 ISDCVEAIIGAYYVEGGLKAAFA-VLKWLQIETLEEEQI 1223


>gi|309800535|ref|ZP_07694686.1| ribonuclease III [Streptococcus infantis SK1302]
 gi|308115846|gb|EFO53371.1| ribonuclease III [Streptococcus infantis SK1302]
          Length = 115

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 1/109 (0%)

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTP 173
             D  E+ + AL LD  I+   TF+ +    +      +  +D KT LQE       V  
Sbjct: 1   MGDAFEAFLGALLLDKDIKTVKTFIYQVMIPKVEAGDFEMIKDYKTHLQELLQVNGDVDI 60

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            Y+V    GP HD  F V V + G +   G   SK+ AEQ AA   +++
Sbjct: 61  RYQVISEIGPAHDKMFEVEVLVEGQSLGSGKGRSKKLAEQEAAKNAVEK 109


>gi|332029751|gb|EGI69620.1| Endoribonuclease Dcr-1 [Acromyrmex echinatior]
          Length = 1257

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 34/165 (20%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
            TLE +IGY F NR+ L +A TH S  ++   E Y+RLEFLGD IL  LI+  ++ +  + 
Sbjct: 1003 TLESKIGYKFKNRAFLLQAFTHPSYTANGITECYQRLEFLGDAILDFLITCYIYENDVNL 1062

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLAS------------------------------- 95
              G+L+   ++LV+  T + ++    L +                               
Sbjct: 1063 SPGDLTDLRSALVNNITFACLSVRHGLHTALLAYAPKLHEIIDCFVRFQEERDYVVNDEL 1122

Query: 96   -FIRVSSDLRK-DVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138
             ++ +  D         +  +  D+ ESLI A+YLD G  +   +
Sbjct: 1123 LYVLIEEDECNITEYVDVPKVLGDLFESLIGAIYLDSGKNLTKVW 1167



 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%)

Query: 39  SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
           + ERLE LGD  L  ++S  L++ F +  EG+L+     ++          +  +   I+
Sbjct: 794 NLERLETLGDSYLKFIVSLFLYHKFPTFNEGQLTALKGKMIGNRNLYYCGNKKGIPGRIK 853


>gi|157285011|gb|ABV31245.1| dicer-like 3 [Physcomitrella patens]
          Length = 1641

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 89/226 (39%), Gaps = 28/226 (12%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTH-SSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
                  EKRIGY F N  L  +ALTH S++       Y+RLEFLGD +L  L++  LF  
Sbjct: 1348 EDLKAFEKRIGYTFKNIYLPLEALTHFSNMVGDQIRCYQRLEFLGDAVLDFLLTRHLFTS 1407

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD---------------- 106
              ++  G L+    + V+ E  ++VA +  L  ++R  S                     
Sbjct: 1408 HPTSTPGLLTSLRTASVNNERFARVAVKHRLHCYLRHGSGRLLHQIEEFVKSFEAADDDQ 1467

Query: 107  -------VCSFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAK 158
                          +  D+VES+  A+ +D   ++   + V     +  +          
Sbjct: 1468 KNSSFGLNGLEAPKVLGDLVESIAGAILVDTCFDLDKVWAVMMPLLEPIVTPATLDIHPV 1527

Query: 159  TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
            TEL+E   +K   + +Y V      + + R    V+IS     +G 
Sbjct: 1528 TELEELCMSKGY-SIKYGVHKED--ECNSRAIYEVQISDELFFRGE 1570



 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 25   KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
            KALT +  + ++  + E LE  GD  L   +S  LF    +A EG LS R    +  E  
Sbjct: 1143 KALTTTRCNENF--NMEALELFGDSFLKYAVSRKLFLESSTANEGVLSTRRIRSICNEAL 1200

Query: 85   SQVARELDLASFIR 98
             ++A +  L+++IR
Sbjct: 1201 HKLAVDRGLSAYIR 1214


>gi|305354766|emb|CBL30926.1| Dicer protein [Echinococcus multilocularis]
          Length = 1981

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 67/288 (23%), Positives = 100/288 (34%), Gaps = 80/288 (27%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-----------------SYERLEFLG 47
            R+S LE+ IGY F NR LL +A THS+    +                    YERLEFLG
Sbjct: 1695 RFSKLEEIIGYTFKNRRLLIEAFTHSTCRDLHGPPSDDDGGFHGSVTSISGGYERLEFLG 1754

Query: 48   DRILGLLISTLLFNHF--DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV------ 99
            D +L   ++  LF          G L+   ++LV+      +A    L +F+R       
Sbjct: 1755 DAVLDYAVTRFLFTTDATARLSPGALTDLRSALVNNVVFGALAVRHGLHAFLRAAAPPLT 1814

Query: 100  ---------------------------------------SSDLRKDVCSFMTSIQADVVE 120
                                                   +   R +    +     DV E
Sbjct: 1815 RTMALFLRHHHDVVRGDLDVLIAPEVNACRENKGATASQAEGDRANEEVEVPKALGDVFE 1874

Query: 121  SLIAALYLDGG--IEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKV 177
            SL  A++LD G  +           ++R  + S    +     L E         PE +V
Sbjct: 1875 SLAGAVFLDSGLCLNTLWRVFFPLLRERIERYSTCVAKSPVRRLLELC-------PE-RV 1926

Query: 178  TFRS---GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             F      PD   R  VVV ++G+    G+  + R A+  AA    +R
Sbjct: 1927 KFERPMVRPDGKMR--VVVRVAGIGRYVGVGRTYRLAKSAAADLAYRR 1972



 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
            + ERLE +GD  L   ++  LF  +  A EG LS   + +V      ++  E +L   I
Sbjct: 1520 NMERLETIGDSFLKFAVTMDLFLRYPEAHEGHLSSLRSQIVGNSNLYRLGCEKNLPGRI 1578


>gi|313236326|emb|CBY11646.1| unnamed protein product [Oikopleura dioica]
          Length = 1519

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 57/253 (22%), Positives = 92/253 (36%), Gaps = 62/253 (24%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y   EK+IGY F N+  L ++LTH+S   +     Y+RLEFLGD +L  LI+  LF+H  
Sbjct: 1249 YGEFEKKIGYTFKNKGYLLQSLTHASYQYNQVTNCYQRLEFLGDAVLDFLITRHLFDHPT 1308

Query: 65   SA-KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF------------- 110
                 GEL+    +LV+    + +A + D   ++   +    +V                
Sbjct: 1309 KRFSPGELTDLRAALVNNNIFAALAVKFDFHKYLYALTPDLHNVIRDYVLYCQTRQDVEG 1368

Query: 111  ----------------------------MTSIQADVVESLIAALYLDGGIE------VAG 136
                                        +  +  D+ ES+  A+YLD G+       V  
Sbjct: 1369 MEAVLKRIRLEEEPEEEEGDHEDSEDIEVPKVLGDIYESVAGAIYLDSGMNLDAVWGVYR 1428

Query: 137  TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG-VTPEYKVTFRSGPDHDPRFTVVVEI 195
              + KY  + ++      R    EL E          PE +         D ++ V V I
Sbjct: 1429 PMLQKYIDKYSINP---PRSPIRELLELEPETAKFSAPEKRA--------DGKYRVTVHI 1477

Query: 196  -SGLAPAQGMDCS 207
             +      G   +
Sbjct: 1478 ANNKGRFAGAGRN 1490



 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 46/130 (35%), Gaps = 30/130 (23%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL-ASFI 97
            + ERLE LGD  L   ++  L+  ++   EG+LS   +  VS     ++    D+    +
Sbjct: 1063 NLERLEMLGDCFLKYSVTVYLYCKYEHQHEGQLSFFRSKKVSNRNLFRLGVYNDIPGRMV 1122

Query: 98   RVSSDLRKDVCSFMT----------------------------SIQADVVESLIAALYLD 129
                       +++                             SI AD +E+LI A    
Sbjct: 1123 AEQFMQNDTGGNWLPPGYFNKDHAALEKPLIYNHYSDQYLTDKSI-ADCMEALIGAYLKA 1181

Query: 130  GGIEVAGTFV 139
             GIE    F+
Sbjct: 1182 TGIEATQQFL 1191


>gi|50290469|ref|XP_447666.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526976|emb|CAG60603.1| unnamed protein product [Candida glabrata]
          Length = 734

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 53/236 (22%), Positives = 98/236 (41%), Gaps = 31/236 (13%)

Query: 16  AFANRSLLEKALTHSSISH---------SYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
              N ++  +   H S              + SYERLEFLGD ++  +++T+++  F + 
Sbjct: 423 EIKNEAIKARVFIHQSALSGQSYLTEEEKIKNSYERLEFLGDSVINSIMTTIIYKSFPNY 482

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSS---DLRKDVCSFMTSIQADVVESLI 123
             G+++     LVS     + A    L   + +     +   +  S +  I AD+ E+ +
Sbjct: 483 DAGQMTRLRVLLVSNRRLEKWAYLYGLQKHLLIRKSILNEMLNSGSKVYKIYADLFEAYV 542

Query: 124 AALYLD---GGIEVAGTFVDKYWKQRALKS-----------GKFRRDAKTELQEWAHAKF 169
             L  D   G +     ++     + A+K+                +AKT+L E   A  
Sbjct: 543 GGLVEDDPTGNMPKIRDWLSTL-AEEAIKTISDKNALPGTDNNINMNAKTQL-EKLLAPV 600

Query: 170 GVTPEYKVTFRSGPDHDPRFTV-VVEI-SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           G+  +Y +T R      P FTV    + +G     G   + + AEQ+AA  +L+++
Sbjct: 601 GLEAQYVITNRRSSKKSP-FTVIECRVANGQVTGIGKGRNYKIAEQIAAGNILEKK 655


>gi|115292171|emb|CAK32533.1| putative dicer-like protein [Mucor circinelloides]
          Length = 1529

 Score =  132 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 22/173 (12%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
            +    + + +GY F N +L+ +ALTH+S+++S    Y+RLEFLGD +L   ++  LF  +
Sbjct: 1249 IDIKKVSRILGYEFQNEALIAEALTHASVTNSSVPCYQRLEFLGDAVLDFCVTNYLFEKY 1308

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------SSDL-- 103
             +A  G L     S V+ +  S +  +L L   IR                   S D   
Sbjct: 1309 HTAPPGTLHDLRKSSVNNDILSVLCIQLGLHVHIRHFSTTFPSAVKQFQELVVASQDEKG 1368

Query: 104  RKDVCSFMTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSGKFR 154
               +      + +DVVESLI A+++D G   +      D+  K          
Sbjct: 1369 EYWLNFNPPKVLSDVVESLIGAVFVDAGFNLDPVLGLFDRLLKPLLDDHISIE 1421



 Score = 73.2 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/133 (29%), Positives = 58/133 (43%), Gaps = 23/133 (17%)

Query: 18   ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
             +  +L +A T SS     ++ Y+RLEFLGD +L  + ST +F     + E EL+     
Sbjct: 1060 KDPYML-EAFTASSAG--LEKDYQRLEFLGDSVLKFITSTYVFVTLPISNEFELTESRMR 1116

Query: 78   LVSAETCSQVARELDLASFI----------RVSSDLRKDVCSFM----------TSIQAD 117
            ++S     + A +L L  +I          R  + L KD  + M              AD
Sbjct: 1117 MISNTALFKSAIQLRLYEYICSQNLPRRFYRPPNYLCKDDSAEMIKSLTYHKLSDKTLAD 1176

Query: 118  VVESLIAALYLDG 130
            VVES + A YL  
Sbjct: 1177 VVESTLGASYLSC 1189


>gi|158706454|sp|Q0CW42|DCL1_ASPTN RecName: Full=Dicer-like protein 1; Includes: RecName:
            Full=Endoribonuclease dcl1; Includes: RecName:
            Full=ATP-dependent helicase dcl1
          Length = 1519

 Score =  132 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 92/249 (36%), Gaps = 37/249 (14%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
             +E+++GY F    LL  A TH S   + +    Y+ LEFLGD +L ++    LF  F  
Sbjct: 1237 RVEEKLGYHFRYPRLLHSAFTHPSYPSAWARVPCYQSLEFLGDALLDMVCVEDLFRRFPD 1296

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSFM------------- 111
                 L+    ++VS +    +A +L L + +   SS L+  +  +              
Sbjct: 1297 RDPQWLTEHKMAMVSNKFLGALAVKLGLHTHLSYFSSALQSQITHYAEEAQAAASQSDVA 1356

Query: 112  ----------TSI-QADVVESLIAALYLDGG--IEVAGTF----VDKYWKQRALKSGKFR 154
                        +   D+VE+ + A+++D     E    F    +  Y+   A+      
Sbjct: 1357 VDYWTLTQDPPKVCLPDMVEAYLGAVFVDSNFRFEEVEVFFQQHIKPYFHDMAIYDTFAN 1416

Query: 155  RDAKTELQEWAHAKFGVTPEYKVT--FRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAA 211
            R   T L      ++G    Y +      G D D       V +       G+  S R A
Sbjct: 1417 RHPTTFLHNKLTNEYGCL-NYCLKAGEIPGADGDASTVLAAVIVHDTILTTGVASSGRYA 1475

Query: 212  EQVAAAEVL 220
            +  A+   L
Sbjct: 1476 KVKASENAL 1484



 Score = 72.8 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 46/191 (24%), Positives = 63/191 (32%), Gaps = 48/191 (25%)

Query: 11   KRIGYAFANRSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTL 58
            K++G   +      +ALT        H S    +     ++YERLEFLGD  L +  S  
Sbjct: 1031 KKLGLEIS-LEYALEALTKDSDNTHEHRSQQVHMQRGMGKNYERLEFLGDCFLKMATSIS 1089

Query: 59   LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-----------------SS 101
            LFN      E +  V    L+        A + +L  FIR                    
Sbjct: 1090 LFNQHPDDNEFDYHVNRMCLICNRNLFNSAVKKELYQFIRSRGFSRDTWYPEGLTLLQGR 1149

Query: 102  DLRKDVCSFM-----TSIQADVVESLIAALYL--------DGGIEVAGTFVDKYWKQRAL 148
            D  K + S           ADV E+LI A  L        D G+      VD        
Sbjct: 1150 DHSKKIGSESKHALAEKTIADVCEALIGAALLTPGPQHRFDMGVRAVSAVVDS-----NE 1204

Query: 149  KSGKFRRDAKT 159
             +    RD  +
Sbjct: 1205 HNAASWRDYIS 1215


>gi|188593364|emb|CAO78751.1| Oikopleura cytoplasmic RNAse III enzyme Dicer [Oikopleura dioica]
          Length = 1814

 Score =  132 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 57/253 (22%), Positives = 92/253 (36%), Gaps = 62/253 (24%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            Y   EK+IGY F N+  L ++LTH+S   +     Y+RLEFLGD +L  LI+  LF+H  
Sbjct: 1544 YGEFEKKIGYTFKNKGYLLQSLTHASYQYNQVTNCYQRLEFLGDAVLDFLITRHLFDHPT 1603

Query: 65   SA-KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF------------- 110
                 GEL+    +LV+    + +A + D   ++   +    +V                
Sbjct: 1604 KRFSPGELTDLRAALVNNNIFAALAVKFDFHKYLYALTPDLHNVIRDYVLYCQTRQDVEG 1663

Query: 111  ----------------------------MTSIQADVVESLIAALYLDGGIE------VAG 136
                                        +  +  D+ ES+  A+YLD G+       V  
Sbjct: 1664 MEAVLKRIRLEEEPEEEEGDHEDSEDIEVPKVLGDIYESVAGAIYLDSGMNLDAVWGVYR 1723

Query: 137  TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG-VTPEYKVTFRSGPDHDPRFTVVVEI 195
              + KY  + ++      R    EL E          PE +         D ++ V V I
Sbjct: 1724 PMLQKYIDKYSINP---PRSPIRELLELEPETAKFSAPEKRA--------DGKYRVTVHI 1772

Query: 196  -SGLAPAQGMDCS 207
             +      G   +
Sbjct: 1773 ANNKGRFAGAGRN 1785



 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 27/55 (49%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL 93
            + ERLE LGD  L   ++  L+  ++   EG+LS   +  VS     ++    D+
Sbjct: 1308 NLERLEMLGDCFLKYSVTVYLYCKYEHQHEGQLSFFRSKKVSNRNLFRLGVYNDI 1362


>gi|226294068|gb|EEH49488.1| Dicer [Paracoccidioides brasiliensis Pb18]
          Length = 1423

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 86/241 (35%), Gaps = 40/241 (16%)

Query: 11   KRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKE 68
             R+GY F    LL  A TH+S    + +   Y+RLEFLGD +L ++    L++ +     
Sbjct: 1145 DRLGYRFKYPRLLSSAFTHASYPTGWSKVPCYQRLEFLGDSLLDMVCVEHLYHKYPDRDP 1204

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFM---------------- 111
              L+    ++VS +    VA +L L   +   S  L   +  +                 
Sbjct: 1205 QWLTEHKMAMVSNKFLGAVAVKLGLHRHLLYFSKALLGQITRYAEEIEATETESIDSPDF 1264

Query: 112  -------TSIQADVVESLIAALYLDG--GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162
                        D++E+ I A+++D     EV   F  +  K+       +         
Sbjct: 1265 WTTTSDPPKCLPDMLEAYIGAIFVDSNFSFEVVEDFFQQCLKKYFEDMSIYD-------- 1316

Query: 163  EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                A    T   +V      +H  R    V I     A+G+  S   A+  A+   L +
Sbjct: 1317 --TFANKHPTASGEVDSVDAAEH--RVLAAVIIHDEFVAEGIASSAGYAKVKASENALAK 1372

Query: 223  E 223
             
Sbjct: 1373 L 1373



 Score = 65.5 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 54/163 (33%), Gaps = 36/163 (22%)

Query: 20   RSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
              L  +ALT        H +          ++YERLEFLGD  L +  S  LF       
Sbjct: 946  PELALEALTKDSDNTEEHRAEQIHFQRGMGKNYERLEFLGDCFLKMSTSISLFAMNADDD 1005

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASF---------------IRVSSDLRKDVCSFMT 112
            E +  V+   L+  +     A  L +  F               I++     K   +   
Sbjct: 1006 EFDFHVKRMCLICNQNLFNTAMSLGIYEFVRTQGFSRRNWYPEGIKLLQGKAKSETAENK 1065

Query: 113  SIQ-----ADVVESLIAALYLDGG----IEVAGTFVDKYWKQR 146
                    AD+ E+LI A  L GG     + A   V  +    
Sbjct: 1066 HSLADKSIADICEALIGASLLSGGRVHRFDTAVKAVTAFVNSE 1108


>gi|225684422|gb|EEH22706.1| dicer [Paracoccidioides brasiliensis Pb03]
          Length = 1469

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 86/241 (35%), Gaps = 40/241 (16%)

Query: 11   KRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKE 68
             R+GY F    LL  A TH+S    + +   Y+RLEFLGD +L ++    L++ +     
Sbjct: 1206 DRLGYRFKYPRLLSSAFTHASYPTGWSKVPCYQRLEFLGDSLLDMVCVEHLYHKYPDRDP 1265

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFM---------------- 111
              L+    ++VS +    VA +L L   +   S  L   +  +                 
Sbjct: 1266 QWLTEHKMAMVSNKFLGAVAVKLGLHRHLLYFSKALLGQITRYAEEIEATETESIDSPDF 1325

Query: 112  -------TSIQADVVESLIAALYLDG--GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162
                        D++E+ I A+++D     EV   F  +  K+       +         
Sbjct: 1326 WTTTSDPPKCLPDMLEAYIGAIFVDSNFSFEVVEDFFQQCLKKYFEDMSIYD-------- 1377

Query: 163  EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                A    T   +V      +H  R    V I     A+G+  S   A+  A+   L +
Sbjct: 1378 --TFANKHPTASGEVDSVDAAEH--RVLAAVIIHDEFVAEGIASSAGYAKVKASENALSK 1433

Query: 223  E 223
             
Sbjct: 1434 L 1434



 Score = 65.1 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 50/144 (34%), Gaps = 32/144 (22%)

Query: 20   RSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
              L  +ALT        H +          ++YERLEFLGD  L +  S  LF       
Sbjct: 1007 PELALEALTKDSDNTEEHRAEQIHFQRGMGKNYERLEFLGDCFLKMSTSISLFAMNADDD 1066

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASF---------------IRVSSDLRKDVCSFMT 112
            E +  V+   L+  +     A  L +  F               I++     K   +   
Sbjct: 1067 EFDFHVKRMCLICNQNLFNTAMSLGIYEFVRTQGFSRRNWYPEGIKLLQGKAKSETAENK 1126

Query: 113  SIQ-----ADVVESLIAALYLDGG 131
                    AD+ E+LI A  L GG
Sbjct: 1127 HSLADKSIADICEALIGASLLSGG 1150


>gi|156371137|ref|XP_001628622.1| predicted protein [Nematostella vectensis]
 gi|156215603|gb|EDO36559.1| predicted protein [Nematostella vectensis]
          Length = 261

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 52/267 (19%), Positives = 96/267 (35%), Gaps = 66/267 (24%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFN 61
             + +E  +GY F +R +L +ALTH+S   +Y     SYE+LEFLGD +L  L++  +  
Sbjct: 5   ELALVEASLGYTFRDRDILLQALTHTSYPRAYSSVNSSYEQLEFLGDALLDYLVTRHVLQ 64

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI----------------RVSSDLRK 105
            F     G ++   +++V+  + + +  + D    +                R+S    K
Sbjct: 65  RFPRLSPGAITDLRSAVVNNYSLACLTIQRDFHKHMRSMSMALFKVVRRFVRRLSEIEEK 124

Query: 106 D---------------VCS--FMTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQR 146
           +                     +  +  D+ E+L+ ALY+D G   E+A + +       
Sbjct: 125 ETRPDQLLLTTVEDGRGGEAIEVPKVLGDLFEALLGALYVDCGRDEELAWSVIYPLL--- 181

Query: 147 ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT-----------VVVEI 195
                       T + E       ++P  ++           FT             + +
Sbjct: 182 ------------TPIIEHYSVHLPISPTRQLVEMM--PGAATFTCLSQNVIGHHACELVV 227

Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            G     G   + + A   AA   L R
Sbjct: 228 KGYGRFMGTGRNAQIARSTAAQHALAR 254


>gi|158706452|sp|A2RAF3|DCL1_ASPNC RecName: Full=Dicer-like protein 1; Includes: RecName:
            Full=Endoribonuclease dcl1; Includes: RecName:
            Full=ATP-dependent helicase dcl1
          Length = 1525

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 96/248 (38%), Gaps = 36/248 (14%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDS 65
             +E+++ Y F   +LL  A TH S   ++ +   Y+RLEFLGD ++ ++    LF  F  
Sbjct: 1245 KIEEKLSYRFRYPTLLGSAFTHPSYPSAWAKVPCYQRLEFLGDSLIDMVCVEDLFARFPD 1304

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------SSDLRK-- 105
                 L+    ++VS +    +A +L L + ++                   +    +  
Sbjct: 1305 RDPQWLTEHKMAMVSNKFLGALAVKLGLHTHLKYFSAPLQSQITQYAEEIQTAEGESEGA 1364

Query: 106  ----DVCSFMTSIQADVVESLIAALYLDG--GIEVAGTF----VDKYWKQRALKSGKFRR 155
                 V         D+VE+ + A+++D     EV   F    +  +++  A+      +
Sbjct: 1365 VDYWTVTKDPPKCLPDMVEAYVGAVFVDSDFNFEVIERFFRDYIKPFFEDMAIYDTFANK 1424

Query: 156  DAKTELQEWAHAKFGVTPEYKVTFRSGP--DHDPR-FTVVVEISGLAPAQGMDCSKRAAE 212
               T L      +FG    Y +     P  D  P      V +  +  A+G   S R A+
Sbjct: 1425 HPTTFLHNRLTNEFGC-VNYCLKAGEMPSIDGAPAGVLAAVIVHDVVIAEGTATSGRYAK 1483

Query: 213  QVAAAEVL 220
              A+ + L
Sbjct: 1484 VKASEKAL 1491



 Score = 70.1 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 63/187 (33%), Gaps = 40/187 (21%)

Query: 11   KRIGYAFANRSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTL 58
            + + +      L  +A T        H +    +      +YERLEFLGD  L +  S  
Sbjct: 1039 ESLNFTVK-LDLALEAFTKDSDNTDEHRAQQIHVQRGMGRNYERLEFLGDCFLKMATSIA 1097

Query: 59   LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR---------------VSSDL 103
            LF       E +  V    L+  +     A + ++  +IR               +    
Sbjct: 1098 LFTQNPDDDEFDYHVNRMCLICNKNLFNAAVDKEIYKYIRSRGFSRHTWYPEGLKLLQGK 1157

Query: 104  RKDVCSFMTS-------IQADVVESLIAALYLDGG----IEVAGTFVDKYWKQRALKSGK 152
                 +   S         ADV E+LI A  L GG     ++A   V       + K+ +
Sbjct: 1158 DHSRKATTESKHALAEKTIADVCEALIGAALLSGGPDHRFDMAVKAVTTLVNSPSHKAER 1217

Query: 153  FRRDAKT 159
              +D  +
Sbjct: 1218 -WKDYIS 1223


>gi|317037196|ref|XP_001398755.2| dicer-like protein 1 [Aspergillus niger CBS 513.88]
          Length = 1493

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 96/248 (38%), Gaps = 36/248 (14%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDS 65
             +E+++ Y F   +LL  A TH S   ++ +   Y+RLEFLGD ++ ++    LF  F  
Sbjct: 1213 KIEEKLSYRFRYPTLLGSAFTHPSYPSAWAKVPCYQRLEFLGDSLIDMVCVEDLFARFPD 1272

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------SSDLRK-- 105
                 L+    ++VS +    +A +L L + ++                   +    +  
Sbjct: 1273 RDPQWLTEHKMAMVSNKFLGALAVKLGLHTHLKYFSAPLQSQITQYAEEIQTAEGESEGA 1332

Query: 106  ----DVCSFMTSIQADVVESLIAALYLDG--GIEVAGTF----VDKYWKQRALKSGKFRR 155
                 V         D+VE+ + A+++D     EV   F    +  +++  A+      +
Sbjct: 1333 VDYWTVTKDPPKCLPDMVEAYVGAVFVDSDFNFEVIERFFRDYIKPFFEDMAIYDTFANK 1392

Query: 156  DAKTELQEWAHAKFGVTPEYKVTFRSGP--DHDPR-FTVVVEISGLAPAQGMDCSKRAAE 212
               T L      +FG    Y +     P  D  P      V +  +  A+G   S R A+
Sbjct: 1393 HPTTFLHNRLTNEFGC-VNYCLKAGEMPSIDGAPAGVLAAVIVHDVVIAEGTATSGRYAK 1451

Query: 213  QVAAAEVL 220
              A+ + L
Sbjct: 1452 VKASEKAL 1459



 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 63/187 (33%), Gaps = 40/187 (21%)

Query: 11   KRIGYAFANRSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTL 58
            + + +      L  +A T        H +    +      +YERLEFLGD  L +  S  
Sbjct: 1007 ESLNFTVK-LDLALEAFTKDSDNTDEHRAQQIHVQRGMGRNYERLEFLGDCFLKMATSIA 1065

Query: 59   LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR---------------VSSDL 103
            LF       E +  V    L+  +     A + ++  +IR               +    
Sbjct: 1066 LFTQNPDDDEFDYHVNRMCLICNKNLFNAAVDKEIYKYIRSRGFSRHTWYPEGLKLLQGK 1125

Query: 104  RKDVCSFMTS-------IQADVVESLIAALYLDGG----IEVAGTFVDKYWKQRALKSGK 152
                 +   S         ADV E+LI A  L GG     ++A   V       + K+ +
Sbjct: 1126 DHSRKATTESKHALAEKTIADVCEALIGAALLSGGPDHRFDMAVKAVTTLVNSPSHKAER 1185

Query: 153  FRRDAKT 159
              +D  +
Sbjct: 1186 -WKDYIS 1191


>gi|224141703|ref|XP_002324204.1| dicer-like protein [Populus trichocarpa]
 gi|222865638|gb|EEF02769.1| dicer-like protein [Populus trichocarpa]
          Length = 1492

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 60/235 (25%), Positives = 108/235 (45%), Gaps = 20/235 (8%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHF 63
               +LE ++GY F  + +L++A+TH+SI        Y+RLEFLGD +L LLI+  L+   
Sbjct: 1121 EIKSLESKLGYTFGVKFVLQEAMTHASIQEQGVTYCYQRLEFLGDSVLDLLITWHLYQSH 1180

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL-------------RKDVCSF 110
                 GEL+   ++ V+ +  +QVA + +L + +   S L               D  + 
Sbjct: 1181 TDVDPGELTDLRSASVNNDNFAQVAVKQNLYTHLLHCSTLLQSQITEYVNSFHESDQGTK 1240

Query: 111  MTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTELQEWAHAKF 169
                  D++ES+  AL +D    + G + + K      +   K       EL E   +  
Sbjct: 1241 APKALGDLIESIAGALLIDTKFNLDGVWRIFKPLLSPIVTPEKLELPPLRELVELCDS-I 1299

Query: 170  GVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKRE 223
            GV  + K T ++   H   +   V++       +G + +++AA+  AA+ +LK+ 
Sbjct: 1300 GVFVKEKCTKKAEMVHAQLW---VQLDNELLSGEGYEKNRKAAKGKAASCLLKKL 1351



 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 61/169 (36%), Gaps = 49/169 (28%)

Query: 21   SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
            SL+ +A+T  ++      S ERLE LGD +L   +S  LF  + +  EG+LS   +  V 
Sbjct: 927  SLILEAIT--TLRCCESFSMERLELLGDSVLKYAVSCHLFLKYPNKHEGQLSSWRSGAVC 984

Query: 81   AETCSQVARELDLASFI------------------------------------------- 97
              T  ++  +  +  +I                                           
Sbjct: 985  NSTLHKLGTDCKVQGYILDSAFDPRRWAAPGQKSVRTPAPCKCGVDTLEVPLDRKFQTES 1044

Query: 98   ---RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143
               +V            +   +D VES+I A Y+ GG+ +A   V K++
Sbjct: 1045 AIVKVGKPCDSGHRWMGSKTISDCVESVIGAYYVSGGL-IAAIHVMKWF 1092


>gi|320590575|gb|EFX03018.1| rnase3 domain containing protein [Grosmannia clavigera kw1407]
          Length = 1246

 Score =  131 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 61/268 (22%), Positives = 102/268 (38%), Gaps = 54/268 (20%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            ++ K +GY F    LL  A TH S    +    SY+RLEFLGD +L + I   LF+ F +
Sbjct: 945  SIAKDLGYQFRFPRLLRSAFTHPSYPRIYENLPSYQRLEFLGDALLDMAIVDYLFHKFSN 1004

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL-RKDVCSFMTSI---------- 114
                 L+    ++VS +  + ++  L     I   S   RK +  ++T +          
Sbjct: 1005 KDPQWLTEHKMAMVSNQFLAFLSVSLGFHRHILSFSGEMRKQILEYVTKVEEERVRAESE 1064

Query: 115  -------------------------QADVVESLIAALYLDGGIE---VAGTF----VDKY 142
                                      ADV+E+ + AL++D   +       F    V  Y
Sbjct: 1065 AVEAGRPASEFARDYWVHVTHPPKALADVLEAYVGALFVDSEYDYHGTVLKFFNTHVQPY 1124

Query: 143  WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP----RFTVVV----E 194
            +K  +L      +   T   +    +FG   +++V  +  PD +      F   V     
Sbjct: 1125 FKDMSLYDTFANKHPVTFAVKMLSQRFGCR-DWRVIVQEIPDTEGEGCVTFATKVAAGFL 1183

Query: 195  ISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            + G     G+  S R A+  AA + L +
Sbjct: 1184 VHGQVVGHGIAESGRYAKIGAAKKALAK 1211



 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 28/68 (41%)

Query: 31  SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90
           +       +YERLE LGD  L L  S  LF       E E  V+   ++        A +
Sbjct: 750 NFQAGMGRNYERLELLGDSFLKLATSIALFTLVPDKDEFEYHVQRMCMICNRNLFNNALD 809

Query: 91  LDLASFIR 98
           + L  +IR
Sbjct: 810 MKLEEYIR 817


>gi|121713724|ref|XP_001274473.1| RNase3 domain protein [Aspergillus clavatus NRRL 1]
 gi|119402626|gb|EAW13047.1| RNase3 domain protein [Aspergillus clavatus NRRL 1]
          Length = 1552

 Score =  131 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 96/249 (38%), Gaps = 37/249 (14%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLFNHFD 64
             +E+++GY F    LL  A+TH S   +       Y+RLEFLGD +L ++    LF+ F 
Sbjct: 1270 QVEEKLGYHFRYPRLLCSAVTHPSTPSTWYFRVPCYQRLEFLGDSLLDMVCVEDLFHRFP 1329

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSI--------- 114
                  L+    ++VS +    +A +L     I+  S+ L+  +  ++  I         
Sbjct: 1330 DRDPQWLTEHKMAMVSNKFLGALAVKLGFHKHIKAFSNPLQAQITYYVEEIETAEAESEG 1389

Query: 115  --------------QADVVESLIAALYLDG--GIEVAGTF----VDKYWKQRALKSGKFR 154
                            D+VE+ + A+++D     EV   F    +  Y++  ++      
Sbjct: 1390 AVDYWVVAKDPPKCLPDMVEAYLGAIFVDSDFSFEVIEAFFQAQIKPYFQDMSIYDTFAN 1449

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR---FTVVVEISGLAPAQGMDCSKRAA 211
            +   T L      +FG T  Y +     P  D         V +     ++    S R A
Sbjct: 1450 KHPTTFLHNRLANEFGCT-NYCLKAGEMPAIDGMPAGVLAAVIVHNSVVSEATASSSRYA 1508

Query: 212  EQVAAAEVL 220
            +  A+   L
Sbjct: 1509 KIRASERAL 1517



 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 44/124 (35%), Gaps = 22/124 (17%)

Query: 32   ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91
                  ++YERLEFLGD  L +  S  LF       E +  V    L+  +     A++ 
Sbjct: 1096 FQRGMGKNYERLEFLGDCFLKMATSIALFTQNPDDDEFDYHVNRMCLICNKNLFNTAKKR 1155

Query: 92   DLASFIRVSSDLRK----------DVCSFMTSIQ------------ADVVESLIAALYLD 129
             +  +IR  S  R                   +             ADV E+LI A  L 
Sbjct: 1156 QIYRYIRSRSFSRHVWYPDGLTLLQGKDHSKKMLSQAKHALGEKTIADVCEALIGACLLS 1215

Query: 130  GGIE 133
            GG E
Sbjct: 1216 GGPE 1219


>gi|158706457|sp|A1CBC9|DCL1_ASPCL RecName: Full=Dicer-like protein 1; Includes: RecName:
            Full=Endoribonuclease dcl1; Includes: RecName:
            Full=ATP-dependent helicase dcl1
          Length = 1534

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 96/249 (38%), Gaps = 37/249 (14%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLFNHFD 64
             +E+++GY F    LL  A+TH S   +       Y+RLEFLGD +L ++    LF+ F 
Sbjct: 1252 QVEEKLGYHFRYPRLLCSAVTHPSTPSTWYFRVPCYQRLEFLGDSLLDMVCVEDLFHRFP 1311

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSI--------- 114
                  L+    ++VS +    +A +L     I+  S+ L+  +  ++  I         
Sbjct: 1312 DRDPQWLTEHKMAMVSNKFLGALAVKLGFHKHIKAFSNPLQAQITYYVEEIETAEAESEG 1371

Query: 115  --------------QADVVESLIAALYLDG--GIEVAGTF----VDKYWKQRALKSGKFR 154
                            D+VE+ + A+++D     EV   F    +  Y++  ++      
Sbjct: 1372 AVDYWVVAKDPPKCLPDMVEAYLGAIFVDSDFSFEVIEAFFQAQIKPYFQDMSIYDTFAN 1431

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR---FTVVVEISGLAPAQGMDCSKRAA 211
            +   T L      +FG T  Y +     P  D         V +     ++    S R A
Sbjct: 1432 KHPTTFLHNRLANEFGCT-NYCLKAGEMPAIDGMPAGVLAAVIVHNSVVSEATASSSRYA 1490

Query: 212  EQVAAAEVL 220
            +  A+   L
Sbjct: 1491 KIRASERAL 1499



 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 44/124 (35%), Gaps = 22/124 (17%)

Query: 32   ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91
                  ++YERLEFLGD  L +  S  LF       E +  V    L+  +     A++ 
Sbjct: 1078 FQRGMGKNYERLEFLGDCFLKMATSIALFTQNPDDDEFDYHVNRMCLICNKNLFNTAKKR 1137

Query: 92   DLASFIRVSSDLRK----------DVCSFMTSIQ------------ADVVESLIAALYLD 129
             +  +IR  S  R                   +             ADV E+LI A  L 
Sbjct: 1138 QIYRYIRSRSFSRHVWYPDGLTLLQGKDHSKKMLSQAKHALGEKTIADVCEALIGACLLS 1197

Query: 130  GGIE 133
            GG E
Sbjct: 1198 GGPE 1201


>gi|302693114|ref|XP_003036236.1| hypothetical protein SCHCODRAFT_31237 [Schizophyllum commune H4-8]
 gi|300109932|gb|EFJ01334.1| hypothetical protein SCHCODRAFT_31237 [Schizophyllum commune H4-8]
          Length = 1342

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 57/246 (23%), Positives = 100/246 (40%), Gaps = 44/246 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +S L+ ++GY F +  LL +ALTHSS +      SYERLEFLGD ++ L +   L+  F 
Sbjct: 1086 FSELQAKLGYTFRDGGLLCEALTHSSFASLDSYGSYERLEFLGDAVINLAVVDYLYRKFP 1145

Query: 65   SAKEGELSVRFNSLVSAETCSQVARE-LDLASFIRVSSDLRKDVCS-------------- 109
             A   +LS+     V  +  S ++ + L L   + V++       +              
Sbjct: 1146 DANSDQLSLPRARAVCNQALSALSVKHLQLHKSVLVNNVELSIAINKHAPILEDKPYPEI 1205

Query: 110  -------FMTSIQADVVESLIAALYLDGG--IEVAGTFVDKYWKQRALK-SGKFRRDAKT 159
                       + +D+ ES++ A+++D G   E+    V++  +   +  S    RD  +
Sbjct: 1206 LVKGWKLDPPKVLSDIFESIVGAVFVDTGYDYEITAAVVEQAMEGLLVHLSPAMPRDPVS 1265

Query: 160  ELQEWAHA-KFGVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDC--------SKR 209
            EL  W          E++   R   PD      + + + G   A             S++
Sbjct: 1266 ELIIWVAKSTCREQIEFRFVRRKQYPDG-----IAIYLHGTLLA---GPITTMNHLVSRK 1317

Query: 210  AAEQVA 215
             A + A
Sbjct: 1318 LASERA 1323



 Score = 86.3 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 16/137 (11%)

Query: 13   IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            +G  +  R LL +ALT       +  + +RLE LGD +L L  +  LFN +    EG+L+
Sbjct: 919  LGLPYIERDLLIQALTLPCAGMPF--NNQRLETLGDAVLELSTTVHLFNKYPHRHEGQLT 976

Query: 73   VRFNSLVSAETCSQVARELDLASFI-----------RVSSDLRKDVCSFM---TSIQADV 118
                  +S +     ARE+ L  F+            V        C+          D 
Sbjct: 977  PLRQICISNKCLLTRAREVQLERFLTSETHSLSIWDYVEDSEVPARCARRLFPRRSLQDC 1036

Query: 119  VESLIAALYLDGGIEVA 135
            +E+++ A YL GGI+ A
Sbjct: 1037 MEAILGASYLTGGIDTA 1053


>gi|315044595|ref|XP_003171673.1| hypothetical protein MGYG_06219 [Arthroderma gypseum CBS 118893]
 gi|311344016|gb|EFR03219.1| hypothetical protein MGYG_06219 [Arthroderma gypseum CBS 118893]
          Length = 1518

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 50/251 (19%), Positives = 89/251 (35%), Gaps = 38/251 (15%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNHFD 64
            + ++ ++GY F    LL  A  H S          Y+RLEFLGD +L ++    LF  + 
Sbjct: 1236 NQIKSKLGYCFRYPKLLRSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMVCVNHLFERYP 1295

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------------S 100
                  L+    ++VS +    +A  L+L   +                           
Sbjct: 1296 DKDPQWLTEHKMAMVSNKFLGSLAVSLNLHVHLIHISNTLQGQITSYTEELQAMKIKMEG 1355

Query: 101  SDLRKDVCSFMTSIQADVVESLIAALYLDGGI------EVAGTFVDKYWKQRALKSGKFR 154
            +       +       D+VE+ + A+++D         +    F+  Y++  ++      
Sbjct: 1356 NLEAWTYTNEPPKCLPDIVEAYLGAMFVDSNFNFDVVDDFFRKFIQHYFEDMSVYDTFAN 1415

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV----VVEISGLAPAQGMDCSKRA 210
            +   T L       FG T  Y +     P  D   TV     V +     A+G+  S R 
Sbjct: 1416 KHPITFLHTRLAVDFGCTF-YALKADEIPCVDGT-TVRALAAVCVHDDIVAEGVAISPRH 1473

Query: 211  AEQVAAAEVLK 221
            A+  A+   L+
Sbjct: 1474 AKLKASQNALQ 1484



 Score = 65.5 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 63/195 (32%), Gaps = 47/195 (24%)

Query: 20   RSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
              L  +ALT  S                  ++YERLEFLGD  L +  S  LF       
Sbjct: 1040 PELALEALTKDSENTEDYGMEQIKFQSGMGKNYERLEFLGDCFLKMATSISLFAMNPDND 1099

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIR---------------VSSDLRKDVCSFMT 112
            E +  V+   L+  +     A  L++  FIR               +     K       
Sbjct: 1100 EYDYHVKRMLLICNQNLFNNAIILEIFKFIRSRSFSRRAWYPEGLTLLKGKDKKEGPNGP 1159

Query: 113  ------SIQADVVESLIAALYLDGG----IEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162
                     ADV E+LI A  L GG     ++A   V  +      +  ++  D      
Sbjct: 1160 EHALADKTIADVCEALIGASLLAGGPDHKFDMATKAVTVFVNSDDHRVERWA-DY----- 1213

Query: 163  EWAHAKFGVTPEYKV 177
                +K    P Y+ 
Sbjct: 1214 ----SKLYSLPSYQT 1224


>gi|217077865|ref|YP_002335583.1| ribonuclease III [Thermosipho africanus TCF52B]
 gi|217037720|gb|ACJ76242.1| ribonuclease III [Thermosipho africanus TCF52B]
          Length = 159

 Score =  131 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 39/157 (24%), Positives = 72/157 (45%), Gaps = 9/157 (5%)

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           ++    ++ S +   ++ R++ L ++I +     K    +  SI ADVVE+L+AA+Y+D 
Sbjct: 1   MAQIKAAVASEDILYEIGRDIGLENYIFLGKGELKSGGKYKKSIIADVVEALVAAIYVDC 60

Query: 131 --GIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
              + V        +K+      SGK   D KT+LQE    +F   P Y    +      
Sbjct: 61  KKDLNVLENVFHDTFKRYIEIFFSGKRIFDYKTKLQEITQDRFKQLPVYDTVSQK----- 115

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +F   + I G   ++    SK+ +E++AA    ++ 
Sbjct: 116 NKFITTLYIDGKIYSKAEGFSKKESEKLAAKIAYEKL 152


>gi|328849595|gb|EGF98772.1| hypothetical protein MELLADRAFT_79606 [Melampsora larici-populina
            98AG31]
          Length = 1540

 Score =  130 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 61/259 (23%), Positives = 102/259 (39%), Gaps = 42/259 (16%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             ++ L+ +IGY F    LL +ALTH S        YER E+LGD I+ L I+   +  F 
Sbjct: 1106 SHTALQHKIGYEFKQPLLLMQALTHRSADSFLTNCYEREEWLGDAIVDLWITEHCYRRFS 1165

Query: 65   SAKEGELSVRFNSLVSAETCSQVA-RELDLASFIRV-SSDLRKD---------------- 106
             +   +L+    SLV+  +   ++ ++L L   I+  S    K                 
Sbjct: 1166 DSTAAQLTFTRASLVTNASLGYLSLKKLGLHKMIQHDSRHFEKACDDALRDIESFIEVGS 1225

Query: 107  ---------VCSFMTSIQADVVESLIAALYLDGG--IEVAGTFVDKYWKQRALKSGKFR- 154
                     +      I  D +E+++ A+++D G  + VA   +DK ++    +  +   
Sbjct: 1226 FYDNLTNSFIVFDPPKILGDALEAIVGAIFIDCGLHLSVAYRSLDKIFEDVLPRLKQDEP 1285

Query: 155  RDAKTELQE----WAHAKFGVTPEYKVT--FRSG----PDHDPRFT-VVVEISGLAPAQG 203
            RD  + L      +  ++ G   E+ V     SG     D    F    V + G   A G
Sbjct: 1286 RDPISLLLRTRDTYCCSELGRVTEHVVEKKETSGIRDNEDECESFRLCKVSLHGKVIATG 1345

Query: 204  MDC-SKRAAEQVAAAEVLK 221
                S   AEQ A+    +
Sbjct: 1346 RHRTSNTVAEQRASLNAYE 1364



 Score = 58.2 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 2/100 (2%)

Query: 2    SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
             A +   L K+I     +  L   ALT   I       Y+ LE +GD  L L  S  ++ 
Sbjct: 918  DASQVQALLKKIDVPHVSLDLATMALTQPGI--DVPWDYQTLETVGDAFLKLATSVHVYL 975

Query: 62   HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS 101
                  EG++S   +  V  E     + +  L S++  S 
Sbjct: 976  SHTKKGEGDMSALRSKSVDNEYLRSKSLQAGLGSYVLSSR 1015


>gi|241896736|emb|CAZ65730.1| dicer-2 protein [Mucor circinelloides f. lusitanicus]
          Length = 1608

 Score =  130 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 53/253 (20%), Positives = 95/253 (37%), Gaps = 33/253 (13%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            + +L    + + +G  F    L+ +ALTH+S+ +S    Y+RLEFLGD IL  ++   LF
Sbjct: 1320 LRSLDLPKVTEIVGREFKTPLLIVEALTHASLPNSTSPCYQRLEFLGDAILDFMVIRYLF 1379

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD------------------ 102
              +  A  G ++   +S V+      V  E  L   I   S                   
Sbjct: 1380 ARYPDADPGIITDLKDSCVNNHILGIVCIETGLYRHIIHYSGKLIRAIEFFVSEVEETKA 1439

Query: 103  -----LRKDVCSFMTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQ---RALKSGK 152
                     V   +  + +DVVES++ A ++D G   E       K++       +    
Sbjct: 1440 RGEAVGEYWVDFNIPKVLSDVVESMLGATFVDAGFRLEAVEELFAKWFLPILNNHVTPEL 1499

Query: 153  FRRDAKTELQEWAHAKFGVTPEYKV--TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
             +     +L          +   +   +  +GP+       V+ +     A G D + + 
Sbjct: 1500 IKFHPLRKLITDLQRFGCDSFMLRNHGSGETGPESQK---CVIFLHDKPLATGSDWNIKT 1556

Query: 211  AEQVAAAEVLKRE 223
            A + AA +  +R 
Sbjct: 1557 ARRHAATKASQRL 1569



 Score = 72.8 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 24/130 (18%)

Query: 25   KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
            +A T  S +     +YERLE LGD +L  + +  L+ +F  + EGEL      ++     
Sbjct: 1152 EAYTTPSANMEM--NYERLETLGDSLLKFIATIRLYINFPFSNEGELHHLRIRVICNRAL 1209

Query: 85   SQVARELDLASFIRVSSDLRKDVCS---------------------FMTSIQADVVESLI 123
             + A+ L    ++  S    +                               AD+VE+ +
Sbjct: 1210 YRSAKRLKFYRYV-TSQAFNRRYWRPPGFTSPADNQETIDGLKYHKLSDKTLADIVEASL 1268

Query: 124  AALYLDGGIE 133
             A YL  G+E
Sbjct: 1269 GAAYLSNGLE 1278


>gi|156368540|ref|XP_001627751.1| predicted protein [Nematostella vectensis]
 gi|156214670|gb|EDO35651.1| predicted protein [Nematostella vectensis]
          Length = 199

 Score =  130 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 83/184 (45%), Gaps = 37/184 (20%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            EKRIGY F+N+  L +ALTH+S S +   + Y+RLEFLGD +L  L++ L+++   +  
Sbjct: 4   FEKRIGYEFSNKLYLIQALTHASYSQNRLTDCYQRLEFLGDALLDFLVTELIYSRNTNLD 63

Query: 68  EGELSVRFNSLVSAETCSQVARELDL-------------------------------ASF 96
            GEL+    +LV+    +++A +                                    F
Sbjct: 64  PGELTDLRQALVNNNIFAEIAVKHGFNKSLFQMSPEWFNKIGVFVDHVKEREARGIQDPF 123

Query: 97  IRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKS--GKF 153
           + +S+D  +        +  D+ ES+  A++LD G+++  T+ V     +  + +     
Sbjct: 124 LTLSNDDEE--GIEAPKVLGDIFESVAGAIFLDSGMDLVLTWRVYYRMLKPYIDAYSADV 181

Query: 154 RRDA 157
            ++ 
Sbjct: 182 PKNP 185


>gi|260945020|ref|XP_002616808.1| hypothetical protein CLUG_04049 [Clavispora lusitaniae ATCC 42720]
 gi|238850457|gb|EEQ39921.1| hypothetical protein CLUG_04049 [Clavispora lusitaniae ATCC 42720]
          Length = 406

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 56/226 (24%), Positives = 92/226 (40%), Gaps = 21/226 (9%)

Query: 16  AFANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSA 66
              N  L  +   H S S +              ERLEFLGD +L  L++ +L+  F  A
Sbjct: 58  KIRNAHLRARVFQHKSTSANKTYLAEQEIVSSHNERLEFLGDSVLNTLVTFILYEKFPFA 117

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG LS   +SLVS +T ++ + +      +R   D    + +    I AD+ E+ + AL
Sbjct: 118 NEGLLSQIRSSLVSNKTLAEFSTQYGFDQSLRCKVDE-SALRNGKQKIFADIFEAYVGAL 176

Query: 127 YLDGGIEV--AGTFVDKYWKQRALKSG-------KFRRDAKTELQEWAHAKFGVTPEYKV 177
            ++ G ++     ++      +  ++           +DAKTEL         + P YKV
Sbjct: 177 AMERGFDMNEVQQWLKALMASKLSEADLAIKKATPINKDAKTELYSLV-GTASLHPIYKV 235

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             ++G      F V   +      +G+    R A   AA   LK +
Sbjct: 236 V-QNGNGVQSLFKVQCVMEDNVLGEGVAPGLRDAGLRAAMAALKNK 280


>gi|157167186|ref|XP_001652212.1| dicer-1 [Aedes aegypti]
 gi|108877338|gb|EAT41563.1| dicer-1 [Aedes aegypti]
          Length = 1658

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/167 (28%), Positives = 74/167 (44%), Gaps = 33/167 (19%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHF 63
             Y  +E  +GY F +R+ L +ALTH+S  ++    SY++LEFLGD +L  LIS  +F   
Sbjct: 1400 NYRRIESILGYKFKDRTYLLQALTHASYPTNRITGSYQQLEFLGDAVLDFLISMYIFEQN 1459

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS-------------- 109
             +   G+L+   ++LV+  T + +     L  +I   S    D  S              
Sbjct: 1460 PTMSPGQLTDLRSALVNNVTLACILVRHGLHLYILAESASFTDTVSKFVLFQEQNKHEIT 1519

Query: 110  ------------------FMTSIQADVVESLIAALYLDGGIEVAGTF 138
                               +     DV ESL+AA++LD G + A T+
Sbjct: 1520 DQVNLLVEESDRKMAEFVDVPKALGDVFESLVAAVFLDSGNDFAATW 1566



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 2/78 (2%)

Query: 24   EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83
             KALT  S S  +    ER E LGD  L   IS  L  +     EG L+     +VS   
Sbjct: 1176 IKALTTKSSSDVF--DLERYELLGDAFLKFSISLYLVKYHKEWHEGFLTAVKGQIVSNRN 1233

Query: 84   CSQVARELDLASFIRVSS 101
                A +  L   +++  
Sbjct: 1234 LVYCAIKYGLPGMLKIHK 1251


>gi|168027292|ref|XP_001766164.1| dsRNA-specific nuclease dicer and related ribonuclease
            [Physcomitrella patens subsp. patens]
 gi|162682596|gb|EDQ69013.1| dsRNA-specific nuclease dicer and related ribonuclease
            [Physcomitrella patens subsp. patens]
          Length = 1460

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/191 (24%), Positives = 77/191 (40%), Gaps = 25/191 (13%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTH-SSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
                  EKRIGY F N+ L  +ALTH S++       Y+RLEFLGD +L  L++  LF  
Sbjct: 1222 EDLKAFEKRIGYTFKNKYLPLEALTHFSNMVGDQIRCYQRLEFLGDAVLDFLLTRHLFTS 1281

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD---------------- 106
              ++  G L+    + V+ E  ++VA +  L  ++R  S                     
Sbjct: 1282 HPTSTPGLLTSLRTASVNNERFARVAVKHRLHCYLRHGSGRLLHQIEEFVKSFEAADDDQ 1341

Query: 107  -------VCSFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAK 158
                          +  D+VES+  A+ +D   ++   + V     +  +          
Sbjct: 1342 KNSSFGLNGLEAPKVLGDLVESIAGAILVDTCFDLDKVWAVMMPLLEPIVTPATLDIHPV 1401

Query: 159  TELQEWAHAKF 169
            TEL+E   +K 
Sbjct: 1402 TELEELCMSKG 1412



 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 25   KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
            KALT +  + ++  + E LE  GD  L   +S  LF    +A EG LS R    +  E  
Sbjct: 1017 KALTTTRCNENF--NMEALELFGDSFLKYAVSRKLFLESSTANEGVLSTRRIRSICNEAL 1074

Query: 85   SQVARELDLASFIR 98
             ++A +  L+++IR
Sbjct: 1075 HKLAVDRGLSAYIR 1088


>gi|159126799|gb|EDP51915.1| RNA helicase/RNAse III, putative [Aspergillus fumigatus A1163]
          Length = 1546

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/237 (22%), Positives = 98/237 (41%), Gaps = 25/237 (10%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFD 64
             +E+ +GY F    LL  A+TH S+  ++      Y+RLEFLGD +L ++    LF  F 
Sbjct: 1276 HVEEELGYHFTYPRLLASAITHPSLPSTWGYRVPCYQRLEFLGDSLLDMVCVEDLFRRFP 1335

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSI--------- 114
                  LS    ++VS +    ++ +L     I   S+ L+  +  ++  I         
Sbjct: 1336 DRDPQWLSEHKMAMVSNKFLGALSVKLGFHRRIMAFSNPLQAQITHYVEEIETAQAESQG 1395

Query: 115  --QADVVESLIAALYLDG--GIEVAGTF----VDKYWKQRALKSGKFRRDAKTELQEWAH 166
                D+VE+ + A+++D     +V   F    +  +++  ++      +   T L     
Sbjct: 1396 ACLPDMVEAYLGAIFVDSKFDFQVIEAFFERQIKPFFEDMSIYDTFANKHPTTFLHNKLT 1455

Query: 167  AKFGVTPEYKVTFRSGP--DHDP-RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             ++G T  Y +     P  D  P      V + G   ++    S R A+  A+ + L
Sbjct: 1456 NEYGCT-NYCLKAGELPTIDGAPATVLAAVIVHGNVISEARSSSSRYAKIKASEKAL 1511



 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 65/206 (31%), Gaps = 50/206 (24%)

Query: 20   RSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
                 +A T        H            ++YERLEFLGD  L +  S  LF+   +  
Sbjct: 1078 PDFALEAFTKDSDNTEEHRGQQIHFQRGMGKNYERLEFLGDCFLKMATSIALFSQNPNDD 1137

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK-----------DVCSFMTSIQ- 115
            E +  V    L+  +     A +  +  +IR S    +                 T +  
Sbjct: 1138 EFDYHVNRMCLICNKNLFNTAIKKQIYRYIR-SRGFSRHIWYPDGLTLLHGKDHSTKLLS 1196

Query: 116  -----------ADVVESLIAALYLDGG----IEVAGTFVDKYWKQRALKSGKFRRDAKTE 160
                       ADV E+LI A  L GG     ++A   V       + +        K  
Sbjct: 1197 EGKHALGEKTIADVCEALIGASLLSGGPEHRFDMATKAVSALVDSPSHRVSC----WK-- 1250

Query: 161  LQEWAHAKFGVTPEYKVTFRSGPDHD 186
              E+        P+Y+     G + D
Sbjct: 1251 --EYI--TLYTLPKYQTEKHRGSEDD 1272


>gi|156838880|ref|XP_001643138.1| hypothetical protein Kpol_455p11 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156113733|gb|EDO15280.1| hypothetical protein Kpol_455p11 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 558

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 63/224 (28%), Positives = 95/224 (42%), Gaps = 25/224 (11%)

Query: 19  NRSLLEKALTHSSISH---------SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           + +L   A  H S  +           Q S ERLEFLGD  LG L+S +++  F SA EG
Sbjct: 113 DENLENLAFMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSYIVYTRFPSANEG 172

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI-QADVVESLIAALYL 128
            LS    S+V+       + +L+    ++ +      V     S   AD VE+ I AL +
Sbjct: 173 MLSQMKESIVNNNNLFDWSTKLNFTKRLQGNIATPTRVVKDKMSKRYADCVEAYIGALVI 232

Query: 129 DG-GIEV--AGTFVDKYWKQRALKS------GKFRRDAKTELQEWAH-AKFGVTPEYKVT 178
           D  G E      ++++  +++  KS          ++AK EL E     K G    Y+  
Sbjct: 233 DRFGTEFLDIKEWLEELSEKKLAKSSQMVIKEPLNKNAKNELAELLQINKLGHKLHYRKL 292

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
               P     F V V+I  +   +    S R AE  AA +VL+ 
Sbjct: 293 TEMPP-----FRVEVKIGDILLDEAEGNSIREAEHRAAMKVLEN 331



 Score = 52.4 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 6/57 (10%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISG--LAPAQGMDCSKRAAEQVAAAEVLK 221
           ++  V P+Y++   S  +    FT    I G  +  A G   SK+ A+Q AA+  L+
Sbjct: 492 SRSQVFPDYEMVQHSMDN----FTANCIIKGSGIFLASGRGRSKKIAQQNAASAALR 544


>gi|268611358|ref|ZP_06145085.1| dsRNA-spesific ribonuclease [Ruminococcus flavefaciens FD-1]
          Length = 512

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 61/271 (22%), Positives = 103/271 (38%), Gaps = 53/271 (19%)

Query: 1   MSALRYS---------TLEKRIGYAFANRSLLEKALTHS--SISHSYQESYERLEFLGDR 49
           M+ ++++          + + IGY F N +LL +A T    SI +  +ES E LEF GD+
Sbjct: 149 MNTMKFAASPDKDPAIKIAQIIGYHFNNDNLLRQAFTRRAFSIEYGLEESNEILEFFGDQ 208

Query: 50  ILGLLISTLLFNHF-------------DSAKEGELSVRFNSLVSAETCSQVARELDLASF 96
           +L ++I+  +++ F                 EGEL+   +  ++ E  S  A EL L  +
Sbjct: 209 VLSMIITREMYSSFIVYSNHSVEAPFTSKFNEGELTKIRSKFINKEHLSARAAELGLDKY 268

Query: 97  IRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI------EVAGTFVDKYWKQRALKS 150
           I   +           S + D++E+LI A+  D         +V    V  Y+       
Sbjct: 269 ILYGTGEEP-----GDSAREDMMEALIGAVAADSNWNWKVIEDVVDKLVALYFGNTERLL 323

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI------SGLAPAQGM 204
            +   D    L +W    FG  PEY+V      +  P    +  +      +        
Sbjct: 324 EESAYD---RLNKWHQKHFGCMPEYEVRRVCTDEDSPSSRYICTLRYSVPSNDKGIRNAQ 380

Query: 205 ------DCSKRAAEQVAAAEVL---KREGIW 226
                   S+  A    A   L   K+ G+W
Sbjct: 381 RIDGRPGFSRSMARAYCANMALIFIKKHGLW 411


>gi|57236096|gb|AAW48725.1| dicer-2 [Aedes aegypti]
          Length = 1658

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/167 (28%), Positives = 74/167 (44%), Gaps = 33/167 (19%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHF 63
             Y  +E  +GY F +R+ L +ALTH+S  ++    SY++LEFLGD +L  LIS  +F   
Sbjct: 1400 NYRRIEGILGYKFKDRTYLLQALTHASYPTNRITGSYQQLEFLGDAVLDFLISMYIFEQN 1459

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS-------------- 109
             +   G+L+   ++LV+  T + +     L  +I   S    D  S              
Sbjct: 1460 PTMSPGQLTDLRSALVNNVTLACILVRHGLHLYILAESASFTDTVSKFVLFQEQHKHEIT 1519

Query: 110  ------------------FMTSIQADVVESLIAALYLDGGIEVAGTF 138
                               +     DV ESL+AA++LD G + A T+
Sbjct: 1520 DQVNLLVEESDRKMAEFVDVPKALGDVFESLVAAVFLDSGNDFAATW 1566



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 2/78 (2%)

Query: 24   EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83
             KALT  S S  +    ER E LGD  L   IS  L  +     EG L+     +VS   
Sbjct: 1176 IKALTTKSSSDVF--DLERYELLGDAFLKFSISLYLVKYHKEWHEGFLTAVKGQIVSNRN 1233

Query: 84   CSQVARELDLASFIRVSS 101
                A +  L   +++  
Sbjct: 1234 LVYCAIKYGLPGMLKIHK 1251


>gi|307169911|gb|EFN62420.1| Endoribonuclease Dcr-1 [Camponotus floridanus]
          Length = 506

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 56/226 (24%), Positives = 92/226 (40%), Gaps = 51/226 (22%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           + +E +IGY F NR+ L +A TH S + +   E Y+RLEFLGD IL  LI+  ++    +
Sbjct: 252 NDMETKIGYKFNNRAFLLQAFTHPSYTPNVITECYQRLEFLGDAILDFLITCYIYETCGN 311

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM------------- 111
              G L+   ++LV+  T + +A    L + +   +  L + +  F+             
Sbjct: 312 LSPGHLTDLRSALVNNITFACLAVRYGLDTALLSYAPKLHEAIDRFVKFQQERNYVVNDE 371

Query: 112 -------------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
                                +  D+ ESLI A+YLD G  +   + +  +     +  K
Sbjct: 372 LLWVLLEEEECNLAEYVDVPKVLGDLFESLIGAIYLDSGKNLTKVW-EIVYSFTHKEIDK 430

Query: 153 FRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197
           F ++  K            V   Y+ T     D  P+F   V I G
Sbjct: 431 FSKNTPK----------HPVRLIYENT-----DSRPKFLDAVLIEG 461



 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%)

Query: 39  SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
             ERLE LGD  L  + S  L++ F +  EG+L+     ++          + ++   I+
Sbjct: 44  DLERLETLGDSYLKFITSLFLYHKFPAFNEGQLTALKGKIIGNRNLYYCGNKKNIPGRIK 103


>gi|255589974|ref|XP_002535144.1| dicer-1, putative [Ricinus communis]
 gi|223523936|gb|EEF27239.1| dicer-1, putative [Ricinus communis]
          Length = 259

 Score =  129 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 59/234 (25%), Positives = 89/234 (38%), Gaps = 53/234 (22%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +E+ + Y F NRSLLE+A T SS       SYERLE +GD +L LL +   +  + +   
Sbjct: 35  VEEILKYKFKNRSLLEEAFTDSSFP-GKCFSYERLEHVGDSVLNLLFTKEHYFKYPNLPP 93

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS-----------------FM 111
           G L+    + V  E  ++VA +     F+R    L ++                     +
Sbjct: 94  GALTRLRAANVDTEKLARVAVKHGFHRFLRHKKPLLEEQIREFSQAILEYPLHSNGLVDV 153

Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV 171
             + AD+VES I A+++D       + VD  WK+R LK              W  +    
Sbjct: 154 PKVLADIVESAIGAVFIDSN-----SSVDTVWKKRNLKVKFVDL--------WRESMA-- 198

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA-AEQVAAAEVLKREG 224
                              V V I      +G    K+  A   AA + L   G
Sbjct: 199 -------------------VDVFIDDQLVGRGTYGLKKEIAHNRAAKDALDNIG 233


>gi|302318908|ref|NP_001180543.1| dicer-2 [Bombyx mori]
 gi|300669733|dbj|BAJ11655.1| DICER-2 [Bombyx mori]
          Length = 1677

 Score =  129 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 49/198 (24%), Positives = 86/198 (43%), Gaps = 37/198 (18%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            + +EK + Y F + + L  AL+HSS   +    SYERLEFLGD I+  L+++ +F +   
Sbjct: 1424 TDVEKILNYTFKDSTFLLNALSHSSYIRNRLTSSYERLEFLGDAIIDFLVTSHIFENCRE 1483

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFI--RVSSDLRKDVCSF------------- 110
             K GE++   ++LV+  T +    +L L  ++   ++  L K +  F             
Sbjct: 1484 LKPGEMTDLRSALVNNVTFAAYTVKLGLHKYLCSELNPSLEKAIMKFVEHQIERNHEIEF 1543

Query: 111  ------------------MTSIQADVVESLIAALYLDGG--IEVAGTFVDKYWKQRALK- 149
                              +  + +D+ E+L+ A+YLD G  +E   + + K         
Sbjct: 1544 DVLLLISEVDCQVAEYVDVPKVLSDIFEALVGAVYLDSGGNLETVWSVLYKIMHVEIDSF 1603

Query: 150  SGKFRRDAKTELQEWAHA 167
            S +  +     L E  HA
Sbjct: 1604 SKRIPKQPVKILYEMIHA 1621



 Score = 55.1 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 2/74 (2%)

Query: 26   ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85
            ALT  +I+ +     ER E LGD  L    S  L + F +  EG+L+     L+S     
Sbjct: 1194 ALT--TINSNDTFDLERPETLGDSFLKFAASLYLHHKFPNMNEGQLTNIKGKLISNRNLY 1251

Query: 86   QVARELDLASFIRV 99
                + +L   ++V
Sbjct: 1252 YAGAKFNLGGRMKV 1265


>gi|146324173|ref|XP_753471.2| RNA helicase/RNAse III [Aspergillus fumigatus Af293]
 gi|129558032|gb|EAL91433.2| RNA helicase/RNAse III, putative [Aspergillus fumigatus Af293]
          Length = 1546

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 53/237 (22%), Positives = 98/237 (41%), Gaps = 25/237 (10%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFD 64
             +E+ +GY F    LL  A+TH S+  ++      Y+RLEFLGD +L ++    LF  F 
Sbjct: 1276 HVEEELGYHFTYPRLLASAITHPSLPSTWGYRVPCYQRLEFLGDSLLDMVCVEDLFRRFP 1335

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSI--------- 114
                  LS    ++VS +    ++ +L     I   S+ L+  +  ++  I         
Sbjct: 1336 DRDPQWLSEHKMAMVSNKFLGALSVKLGFHRRIMAFSNPLQAQITHYVEEIETAQAESQG 1395

Query: 115  --QADVVESLIAALYLDG--GIEVAGTF----VDKYWKQRALKSGKFRRDAKTELQEWAH 166
                D+VE+ + A+++D     +V   F    +  +++  ++      +   T L     
Sbjct: 1396 ACLPDMVEAYLGAIFVDSKFDFQVIEAFFERQIKPFFEDMSIYDTFANKHPTTFLHNKLT 1455

Query: 167  AKFGVTPEYKVTFRSGP--DHDP-RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             ++G T  Y +     P  D  P      V + G   ++    S R A+  A+ + L
Sbjct: 1456 NEYGCT-NYCLKAGELPTIDGAPATVLAAVIVHGNVISEARSSSSRYAKITASEKAL 1511



 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 65/206 (31%), Gaps = 50/206 (24%)

Query: 20   RSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
                 +A T        H            ++YERLEFLGD  L +  S  LF+   +  
Sbjct: 1078 PDFALEAFTKDSDNTEEHRGQQIHFQRGMGKNYERLEFLGDCFLKMATSIALFSQNPNDD 1137

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK-----------DVCSFMTSIQ- 115
            E +  V    L+  +     A +  +  +IR S    +                 T +  
Sbjct: 1138 EFDYHVNRMCLICNKNLFNTAIKKQIYRYIR-SRGFSRHIWYPDGLTLLHGKDHSTKLLS 1196

Query: 116  -----------ADVVESLIAALYLDGG----IEVAGTFVDKYWKQRALKSGKFRRDAKTE 160
                       ADV E+LI A  L GG     ++A   V       + +        K  
Sbjct: 1197 EGKHALGEKTIADVCEALIGASLLSGGPEHRFDMATKAVSALVDSPSHRVSC----WK-- 1250

Query: 161  LQEWAHAKFGVTPEYKVTFRSGPDHD 186
              E+        P+Y+     G + D
Sbjct: 1251 --EYI--TLYTLPKYQTEKHRGSEDD 1272


>gi|302794558|ref|XP_002979043.1| hypothetical protein SELMODRAFT_444049 [Selaginella moellendorffii]
 gi|300153361|gb|EFJ20000.1| hypothetical protein SELMODRAFT_444049 [Selaginella moellendorffii]
          Length = 1686

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 70/165 (42%), Gaps = 21/165 (12%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               +LE ++ Y F NRSLL +A+TH+S  +     Y+RLEFLGD +L  L+S  LF    
Sbjct: 1491 SLESLEHKLQYKFQNRSLLVEAITHASQPNCLL-CYQRLEFLGDGVLDFLVSRHLFETHP 1549

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM------------- 111
                G L+   ++ V+ +  +++     L   ++  S                       
Sbjct: 1550 GLPPGTLTDLRSAAVNNKWFARLVVRHGLHQHLQHGSVELDCEIRKFVQNVKEKPDASCF 1609

Query: 112  -----TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151
                   +  D++ES+  A+++D   ++   +  +      + SG
Sbjct: 1610 EDLSAPKVLGDLLESITGAIFVDTNFDLERLW--RVVLPFVIASG 1652



 Score = 65.9 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 55/152 (36%), Gaps = 36/152 (23%)

Query: 25   KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
            +A+T  S     + SYE LE LGD  L  +++  LF  +D   EG+LS R +        
Sbjct: 1312 EAIT--SKKCHEEFSYESLELLGDSFLKYVVTQKLFLVYDKKHEGQLSARRSRATCNAAL 1369

Query: 85   SQVARELDLASFIR---------VSSDL--------RKDVCSF----------------- 110
             Q+A+   +A +IR             +        R    SF                 
Sbjct: 1370 YQLAKSSGIAEYIRDEEFNPSNWTGPGMLTSDSSKCRHQQGSFENEENYFSSCASGHRGI 1429

Query: 111  MTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
                 ADVVE+LI A     G   A   + + 
Sbjct: 1430 RRKALADVVEALIGAYLATSGPPSAMELMKQL 1461


>gi|331236934|ref|XP_003331125.1| hypothetical protein PGTG_13088 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|309310115|gb|EFP86706.1| hypothetical protein PGTG_13088 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1465

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 64/261 (24%), Positives = 100/261 (38%), Gaps = 48/261 (18%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
            L+   LEK+IGY F  + LL +ALTH S +      YER E+LGD ++ + I    +  F
Sbjct: 1099 LKCQALEKKIGYVFKEKLLLVQALTHRSANSFMTNCYEREEWLGDAVIDMWIVEHAYKRF 1158

Query: 64   DSAKEGELSVRFNSLVSAETCSQVA-RELDLASFIRVSSDLRKDVCSFM----------- 111
            D A   EL++    +VS  +   +A ++L L   I  +S+  +  C+             
Sbjct: 1159 DHATAEELTLARAKVVSNGSLGFLALKKLGLQEIIMHASENFEQACTEAIEAIKPFAKIE 1218

Query: 112  ---------------TSIQADVVESLIAALYLDGGIE--VAGTFVDKYWKQRALKSGKF- 153
                             I  DV+E+++ A+++D G     A   +D  ++       +  
Sbjct: 1219 EYFSTIDNLFVVFDPPKILNDVLEAIVGAVFIDSGFNLHTAYRTLDIIFEDVIPGLSRLV 1278

Query: 154  RRDAKT---EL--QEWAHAKFG-------VTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201
             RD  +    L  Q                 P        G D        +E+ G   A
Sbjct: 1279 ARDPLSTMLRLRDQYQCAELRRISTTIREPNP-----NEEGKDPISVKVCRIELHGQEIA 1333

Query: 202  QGMDCSK-RAAEQVAAAEVLK 221
             G   S    AEQ A+ E LK
Sbjct: 1334 SGRHKSSASVAEQRASLEALK 1354



 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/143 (27%), Positives = 60/143 (41%), Gaps = 15/143 (10%)

Query: 2    SALRYSTLEKRIGYAFANRSLL--EKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
              L+ + L KR+   F   SLL   +ALT           Y+ LE LGD  L L  S  +
Sbjct: 919  DTLQATALFKRLD--FPTISLLHGIQALTPP--GGGVPWDYQTLETLGDAFLKLATSVHV 974

Query: 60   FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR--VSSDLRKDVCSFMT----- 112
            +       EG++S   +  V      + A + +L + I     S  R+            
Sbjct: 975  YLSHLKKGEGDMSHVRSRSVDNAYLRRKAIQANLPASILSQHPSTRRRQGAPQREFSRKI 1034

Query: 113  --SIQADVVESLIAALYLDGGIE 133
               + +DVVE+L+ A +L GGIE
Sbjct: 1035 PKRVLSDVVEALLGAGFLTGGIE 1057


>gi|296424770|ref|XP_002841919.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295638171|emb|CAZ86110.1| unnamed protein product [Tuber melanosporum]
          Length = 1402

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 53/261 (20%), Positives = 95/261 (36%), Gaps = 57/261 (21%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
              +E+ +GY F +  LL  ALTH S   +     SY+RLEFLGD +L L+    +F  + 
Sbjct: 1122 EDIEELVGYKFKHPRLLISALTHPSLPFTWDRVPSYQRLEFLGDAVLDLVCVRYMFQKYP 1181

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSF------------- 110
             A    L+    ++VS +    VA E+     + R+ S L   +  +             
Sbjct: 1182 HADPQWLTEHKMAMVSNKFLGMVAVEMGFHRKLRRMGSVLDHAIREYEVDIQDAKANSNG 1241

Query: 111  ----------MTSIQADVVESLIAALYLDGGIEV------AGTFVDKYWKQRAL---KSG 151
                            DV+E+ I A+++D G +         TF+  Y+    +    +G
Sbjct: 1242 AVDFWTSLKAPPKALPDVLEAFIGAVFVDSGFQYNIVERLVNTFILPYFVDMTVFDNFAG 1301

Query: 152  KFRRDAKTELQ-----EW----AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            +      T+       E+    +         Y +T              + +     + 
Sbjct: 1302 QHPTTYITKFMDDLNCEFWGFESQQCMTGNMTYILT-------------AIVVHREIFSY 1348

Query: 203  GMDCSKRAAEQVAAAEVLKRE 223
            G   S +AA   A+   +++ 
Sbjct: 1349 GSGVSVKAARVEASLAAIQKL 1369



 Score = 73.2 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 58/163 (35%), Gaps = 31/163 (19%)

Query: 31   SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90
            S+      +YERLEFLGD  L L  S  L+  + +  E EL V+   L+        A+E
Sbjct: 951  SLQRGMGSNYERLEFLGDCFLKLATSLSLYTAYHADDECELHVKRMVLICNRYLFTKAKE 1010

Query: 91   LDLASFI----------------RVSSDLRKDVC-------SFMTSIQADVVESLIAALY 127
            + +  +I                 +     +                 +DV E+LI A  
Sbjct: 1011 MKIPEYIQTAGFSRRTWYPKMKLLMGKGTTQHNSSKEEISHRLADKSISDVCEALIGAAL 1070

Query: 128  LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKT-------ELQE 163
            +D G++ A   V    +     S K   D          +LQE
Sbjct: 1071 IDKGLDGATQIVTAILRTPE-HSQKVWADYYNCYTKPAYQLQE 1112


>gi|224116530|ref|XP_002317324.1| predicted protein [Populus trichocarpa]
 gi|222860389|gb|EEE97936.1| predicted protein [Populus trichocarpa]
          Length = 217

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 55/194 (28%), Positives = 89/194 (45%), Gaps = 27/194 (13%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M A  ++ +EK + Y F N+  LE+ALTHSS + S   SY+R+EFLGD  LGL +S  ++
Sbjct: 1   MEASVFA-VEKILNYKFKNKRHLEEALTHSSYTDSA--SYQRMEFLGDAALGLALSNYVY 57

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS---------------SDLRK 105
             +     G LS+   + +S E  ++VA +  L  F+R +               S    
Sbjct: 58  LAYPQLDPGHLSLLRAANISTEKLARVAIKHGLYRFVRHNATALDDKVKEFSDAVSGEDD 117

Query: 106 D-----VCSFM-TSIQADVVESLIAALYLDGGIEVAGTFVD-KYWKQRALKSGKFRR--D 156
           D       S     I AD+VES+ AA+Y+D   ++   +V  +   +  +     ++   
Sbjct: 118 DDALVYGGSIKAPKILADIVESVAAAVYVDVDFDLQTFWVIFRGILEPIVTLEDLQQQPQ 177

Query: 157 AKTELQEWAHAKFG 170
             T L E    +  
Sbjct: 178 PVTMLFERCQKQGK 191


>gi|167046036|gb|ABZ10549.1| dicer 1 [Nematostella vectensis]
          Length = 412

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 79/171 (46%), Gaps = 37/171 (21%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFN 61
           A++    E RIGY F+N+  L +ALTH+S S +   + Y+RLEFLGD +L  L++ L+++
Sbjct: 236 AVQLQGFENRIGYEFSNKLYLIQALTHASYSQNRLTDCYQRLEFLGDALLDFLVTELIYS 295

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDL---------------------------- 93
              +   GEL+    +LV+    +++A +                               
Sbjct: 296 RNTNLDPGELTDLRQALVNNNIFAEIAVKHGFNKSLFQMSPEWFNKIGVFVDHVKEREAR 355

Query: 94  ------ASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138
                   F+ +S+D  +        +  D+ ES+  A++LD G+++  T+
Sbjct: 356 GIQISKDPFLTLSNDDEE--GIEAPKVLGDIFESVAGAIFLDSGMDLVLTW 404



 Score = 71.6 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 4/102 (3%)

Query: 19  NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           +  LL +ALT  S   ++    ERLE LGD  L   +S  L+  +    EG+L+ R  S 
Sbjct: 16  DSELLLQALTTKSAGDAF--DLERLEMLGDAFLKQAVSIFLYCCYKDGDEGKLTKRKTSQ 73

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           +S     +VA  L L  +++ +   R        S+QA  VE
Sbjct: 74  LSNRALYRVACRLGLPEYLQNTQLDRVS--WTTPSLQAAEVE 113


>gi|114654621|ref|XP_001154071.1| PREDICTED: dicer1 isoform 2 [Pan troglodytes]
          Length = 1868

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 46/195 (23%), Positives = 77/195 (39%), Gaps = 36/195 (18%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1666 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1725

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107
                G L+   ++LV+    + +A + D   + +                 +  +  + +
Sbjct: 1726 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1785

Query: 108  CSF---------------MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK- 149
             S                +     D+ ESL  A+Y+D G+  E          +    K 
Sbjct: 1786 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1845

Query: 150  SGKFRRDAKTELQEW 164
            S    R    EL E 
Sbjct: 1846 SANVPRSPVRELLEM 1860



 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 13   IGYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            IGY+      N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A E
Sbjct: 1283 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1340

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVS 100
            G LS   +  VS     ++ ++  L S + VS
Sbjct: 1341 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1372


>gi|224613135|dbj|BAH24240.1| dsRNA-specific ribonuclease RNaseIII [Candidatus Phytoplasma
           oryzae]
          Length = 161

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 58/136 (42%), Gaps = 3/136 (2%)

Query: 87  VARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQR 146
            ARE+ L  +I +    +K    +  SI AD  E+L  A+YLD G               
Sbjct: 3   YAREIKLKDYILLGKGEKKRYI-YNYSIIADAFEALFGAIYLDLGYSEVERVFYHIILP- 60

Query: 147 ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206
            LK      D KT+LQE    +      YK+    G  H+ +F     +      +G+  
Sbjct: 61  CLKKTINIIDFKTKLQELVQTEKK-NICYKIISEKGLAHEKKFLAEAYLENKCLGRGLGK 119

Query: 207 SKRAAEQVAAAEVLKR 222
           +K+AAEQ AA + LK 
Sbjct: 120 TKKAAEQRAAEKALKN 135


>gi|156554976|ref|XP_001602524.1| PREDICTED: similar to dicer-1 [Nasonia vitripennis]
          Length = 1563

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 45/176 (25%), Positives = 77/176 (43%), Gaps = 36/176 (20%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
            T+E+R+GY F NR+ L +A TH S   +    SY+RLEFLGD +L  L++  ++    + 
Sbjct: 1362 TMEERLGYKFRNRAFLLQAFTHPSYMPNRQTASYQRLEFLGDAVLDFLLTIHIYETCGNL 1421

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSF--------------- 110
              GEL+   ++LV+  T + +A    L + +  ++  L   +  F               
Sbjct: 1422 SPGELTDLRSALVNNITFACLAVRYGLHTALLALAPKLFDLIDKFVKFQENRNYKIDDEL 1481

Query: 111  -----------------MTSIQADVVESLIAALYLDGG--IEVAGTFVDKYWKQRA 147
                             +  +  D+ ES+I A++LD G  +EV    +    K   
Sbjct: 1482 LWVLLEEEECNMAEHVDVPKVLGDIYESVIGAIFLDSGKNLEVVWQVIYNLMKNEI 1537



 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
            + ER+E LGD  L   IS  L+  + +  EG L+     LV        +++ ++A  + 
Sbjct: 1150 NLERVETLGDSFLKFAISLFLYQAYPTCGEGPLTHLKGKLVGNLNLFYCSKQKNIAGRMH 1209

Query: 99   V 99
            V
Sbjct: 1210 V 1210


>gi|18158946|pdb|1JFZ|A Chain A, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii
           Endonuclease Domain From Aquifex Aeolicus At 2.10
           Angstrom Resolution
 gi|18158947|pdb|1JFZ|B Chain B, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii
           Endonuclease Domain From Aquifex Aeolicus At 2.10
           Angstrom Resolution
 gi|18158948|pdb|1JFZ|C Chain C, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii
           Endonuclease Domain From Aquifex Aeolicus At 2.10
           Angstrom Resolution
 gi|18158949|pdb|1JFZ|D Chain D, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii
           Endonuclease Domain From Aquifex Aeolicus At 2.10
           Angstrom Resolution
 gi|47168733|pdb|1RC5|A Chain A, Crystal Structure Of Mg(Ii)-Complex Of Rnase Iii
           Endonuclease Domain From Aquifex Aeolicus At 2.30
           Angstrom Resolution
 gi|47168734|pdb|1RC5|B Chain B, Crystal Structure Of Mg(Ii)-Complex Of Rnase Iii
           Endonuclease Domain From Aquifex Aeolicus At 2.30
           Angstrom Resolution
 gi|47168735|pdb|1RC5|C Chain C, Crystal Structure Of Mg(Ii)-Complex Of Rnase Iii
           Endonuclease Domain From Aquifex Aeolicus At 2.30
           Angstrom Resolution
 gi|47168736|pdb|1RC5|D Chain D, Crystal Structure Of Mg(Ii)-Complex Of Rnase Iii
           Endonuclease Domain From Aquifex Aeolicus At 2.30
           Angstrom Resolution
          Length = 154

 Score =  127 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 57/152 (37%), Positives = 82/152 (53%), Gaps = 10/152 (6%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              LEK++GY F ++SLLEKALTH S S   +E YE LEFLGD ++   I  LL  +  +
Sbjct: 5   LEQLEKKLGYTFKDKSLLEKALTHVSYSK--KEHYETLEFLGDALVNFFIVDLLVQYSPN 62

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
            +EG LS     L+S E  + +A++L+L  FIR+             +I  DV E+L AA
Sbjct: 63  KREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRG------KINETIIGDVFEALWAA 116

Query: 126 LYLDGGIEV--AGTFVDKYWKQRALKSGKFRR 155
           +Y+D G +         K +K+  L + K  R
Sbjct: 117 VYIDSGRDANFTRELFYKLFKEDILSAIKEGR 148


>gi|18158935|pdb|1I4S|A Chain A, Crystal Structure Of Rnase Iii Endonuclease Domain From
           Aquifex Aeolicus At 2.15 Angstrom Resolution
 gi|18158936|pdb|1I4S|B Chain B, Crystal Structure Of Rnase Iii Endonuclease Domain From
           Aquifex Aeolicus At 2.15 Angstrom Resolution
          Length = 147

 Score =  127 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 57/152 (37%), Positives = 82/152 (53%), Gaps = 10/152 (6%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              LEK++GY F ++SLLEKALTH S S   +E YE LEFLGD ++   I  LL  +  +
Sbjct: 4   LEQLEKKLGYTFKDKSLLEKALTHVSYSK--KEHYETLEFLGDALVNFFIVDLLVQYSPN 61

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
            +EG LS     L+S E  + +A++L+L  FIR+             +I  DV E+L AA
Sbjct: 62  KREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRG------KINETIIGDVFEALWAA 115

Query: 126 LYLDGGIEV--AGTFVDKYWKQRALKSGKFRR 155
           +Y+D G +         K +K+  L + K  R
Sbjct: 116 VYIDSGRDANFTRELFYKLFKEDILSAIKEGR 147


>gi|258567596|ref|XP_002584542.1| predicted protein [Uncinocarpus reesii 1704]
 gi|237905988|gb|EEP80389.1| predicted protein [Uncinocarpus reesii 1704]
          Length = 1055

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 77/184 (41%), Gaps = 32/184 (17%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
             + +++++GY F    LL  A THSS   ++     Y+RLEFLGD +L +     L++ +
Sbjct: 863  VAQIKEKLGYQFKYPKLLRSAFTHSSYPSAWAAVPCYQRLEFLGDSLLDMACVEHLYHRY 922

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFMTSI-------- 114
                   L+    ++VS +    VA +L L   +R  S+ ++  + +++  I        
Sbjct: 923  PDKDPQWLTEHKMAMVSNKFLGCVAVKLGLHPHLRHFSAPIQSQIATYVEEIEAAELESG 982

Query: 115  ---------------QADVVESLIAALYLDGGI------EVAGTFVDKYWKQRALKSGKF 153
                             D+VE+ I A+++D         +    F+ +Y++   +     
Sbjct: 983  DSPDAWTSTSDPPKCLPDMVEAYIGAIFIDSDFRYEVVEDFFERFLKRYFEDMTIYDTYA 1042

Query: 154  RRDA 157
             +  
Sbjct: 1043 NKHP 1046



 Score = 77.4 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/201 (24%), Positives = 67/201 (33%), Gaps = 48/201 (23%)

Query: 21  SLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            L  +ALT        H +          ++YERLEFLGD  L +  S  LF       E
Sbjct: 669 ELALEALTKDSDNTEEHRAMQVHFQRGMGKNYERLEFLGDCFLKMATSISLFTMNPDNDE 728

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRV-----------------SSDLRKDVCSFM 111
            +  V+   LV  +   + A  L L  FIR                       K      
Sbjct: 729 YDFHVKRMCLVCNQNLFKAALNLKLYEFIRSQSFSRRGWYPEGLTLLQGKGQSKTAPENK 788

Query: 112 ----TSIQADVVESLIAALYLDGG----IEVAGTFVDKYWKQRALKSGKFRRDAKTELQE 163
                   ADV E+LI A YL GG     ++A   V   +   +  +    +D       
Sbjct: 789 HALADKTIADVCEALIGASYLSGGKSHRFDMAVRAVT-VFVNSSDHNVSDWQDY------ 841

Query: 164 WAHAKFGVTPEYKVTFRSGPD 184
              +K    P Y+ T  S P 
Sbjct: 842 ---SKLYALPRYQ-TAVSDPA 858


>gi|255550219|ref|XP_002516160.1| Ribonuclease III, putative [Ricinus communis]
 gi|223544646|gb|EEF46162.1| Ribonuclease III, putative [Ricinus communis]
          Length = 1660

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 102/243 (41%), Gaps = 39/243 (16%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            +E ++GY F+ + LL++A+TH+S+        Y+RLEFLGD +L LLI+  L+ +  S  
Sbjct: 1265 IESKLGYTFSVKFLLQEAMTHASMQEQGIGYCYQRLEFLGDSVLDLLITWHLYQNHTSMD 1324

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIRV------------------SSDLRKDVCS 109
             GEL+   ++ VS E  +QV    DL   ++                   S ++ K    
Sbjct: 1325 PGELTDLRSACVSNENFAQVVVRRDLYKHLQHCSTLLLSQIKEYLESFHESDEVAKATGP 1384

Query: 110  FMTSIQADVVESLIAALYLDGGIEVAGTF------VDKYWKQRALKSGKFRRDAKTELQE 163
                   D++ES+  A+ +D  + +   +      +      + L+    R     EL +
Sbjct: 1385 KGPKALGDLLESIAGAMLIDAKLNLDEVWRIFMPLLSPLATPQNLELPPLR-----ELMQ 1439

Query: 164  WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVAAAEVL 220
              ++                +++      + +     L    G D S++AA+  AA  +L
Sbjct: 1440 LCNSLGYF------IKEKCINNNDIVHAELRLQLNDVLLVGNGCDRSRKAAKGKAATHLL 1493

Query: 221  KRE 223
            K+ 
Sbjct: 1494 KKL 1496



 Score = 68.6 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 65/192 (33%), Gaps = 52/192 (27%)

Query: 17   FANRSLLE-KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
            F   SLL  +A+T  +     + S ERLE LGD +L   +S  LF  + +  EG+LS + 
Sbjct: 1063 FHIPSLLILEAIT--TPRSCEKVSMERLELLGDSVLKYSVSCDLFLRYPTKHEGQLSAQR 1120

Query: 76   NSLVSAETCSQVARELDLASFIRVSS---------------------------------- 101
               V   T  Q+     L  +IR S+                                  
Sbjct: 1121 TRAVCNSTLHQLGIGCKLQGYIRDSAFIPRYWVAPGQQPAFYVSCTCGVDTLEVPLDAKF 1180

Query: 102  ---------DLRKDVCSFM--TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS 150
                      +          +   +D VE++I A Y+ GG+  A   +   W    ++ 
Sbjct: 1181 QTEDPKVQIAICCSKGHRWMCSKTISDCVEAVIGAYYVSGGLMAALHVMQ--WLGMDVEF 1238

Query: 151  GKFRRD--AKTE 160
                 D   KT 
Sbjct: 1239 DPSLVDKIIKTA 1250


>gi|255660287|ref|ZP_05405696.1| ribonuclease III [Mycoplasma genitalium G37]
          Length = 271

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 51/180 (28%), Positives = 88/180 (48%), Gaps = 13/180 (7%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFN 61
           + +T  K +     N    EKA  H+S  + ++   ESY+RLEFLGD ++  +++  LF 
Sbjct: 26  KLATFLKNLDIFPNNWEFFEKAFIHASYINEHEDVSESYDRLEFLGDALIDFVVAKKLFE 85

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +    EG L+     +V  E  +++  EL L  F+++S+           +   DV+E+
Sbjct: 86  LYPKYNEGLLTRTKIEIVKGENLNRIGMELKLGDFVKLSNGAELT-----ENTVGDVLEA 140

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           L+ A+Y D G++ A  FV+KY  +R   S   + D  +  QE    +    P  +V+  S
Sbjct: 141 LVGAIYEDMGMKKATEFVEKYIFERTF-SEILKYDFFSLFQE----QKLPEPRVRVSLTS 195


>gi|316974223|gb|EFV57735.1| putative ribosomal protein S7e [Trichinella spiralis]
          Length = 2029

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 62/251 (24%), Positives = 92/251 (36%), Gaps = 50/251 (19%)

Query: 2    SALRYSTLEKRIGYAFANRSLLEKALTHSSISH---SYQESYERLEFLGDRILGLLISTL 58
            +A   ++ E +IGY F N++ L +ALTHSS +       +SYERLEFLGD IL  LIS  
Sbjct: 1763 TAYDLNSFEAKIGYRFTNKAYLIQALTHSSYNEVETPVTDSYERLEFLGDAILDYLISRH 1822

Query: 59   LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLAS-FIRVSSDLRKDVCSFM------ 111
            L++       G LS    +LV+       A  L +   F+     L++ V          
Sbjct: 1823 LYSSKRIRSPGLLSDLRAALVNNYFLYFNAELLSVNERFVLAMRGLKESVNFHNELYMME 1882

Query: 112  -------------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
                                    D+ ES+  A++LD    +A  +   Y+   A + GK
Sbjct: 1883 EEQDDDEKETSEFAEHVEVPKPLGDIFESVAGAIFLDSHCSLATVW-QVYYNMIAEEIGK 1941

Query: 153  FRRDAKT--------------ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
             R D  +               L E    +        +    G        V V ++G 
Sbjct: 1942 QRSDFTSFNKCLCHPPISPVRHLLELEPERVQFNI---LDREEGNSG---VHVQVVVTGK 1995

Query: 199  APAQGMDCSKR 209
                G   S R
Sbjct: 1996 GSFIGSGKSYR 2006



 Score = 43.5 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 25   KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
            +ALT       +    E +E LGD  L  ++S  +F    +  EG L+   + +VS    
Sbjct: 1545 RALTLRKAQDMF--DLESMEALGDSFLKFIVSLHVFIKETNWNEGRLTSLRSEIVSNTNL 1602

Query: 85   SQVARE 90
              + ++
Sbjct: 1603 FNLGKQ 1608


>gi|12045228|ref|NP_073039.1| ribonuclease III [Mycoplasma genitalium G37]
 gi|1350804|sp|P47607|RNC_MYCGE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|3844954|gb|AAC71594.1| ribonuclease III [Mycoplasma genitalium G37]
 gi|166078923|gb|ABY79541.1| ribonuclease III [synthetic Mycoplasma genitalium JCVI-1.0]
          Length = 262

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 51/180 (28%), Positives = 88/180 (48%), Gaps = 13/180 (7%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFN 61
           + +T  K +     N    EKA  H+S  + ++   ESY+RLEFLGD ++  +++  LF 
Sbjct: 17  KLATFLKNLDIFPNNWEFFEKAFIHASYINEHEDVSESYDRLEFLGDALIDFVVAKKLFE 76

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +    EG L+     +V  E  +++  EL L  F+++S+           +   DV+E+
Sbjct: 77  LYPKYNEGLLTRTKIEIVKGENLNRIGMELKLGDFVKLSNGAELT-----ENTVGDVLEA 131

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
           L+ A+Y D G++ A  FV+KY  +R   S   + D  +  QE    +    P  +V+  S
Sbjct: 132 LVGAIYEDMGMKKATEFVEKYIFERTF-SEILKYDFFSLFQE----QKLPEPRVRVSLTS 186


>gi|171690380|ref|XP_001910115.1| hypothetical protein [Podospora anserina S mat+]
 gi|170945138|emb|CAP71249.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1568

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 54/271 (19%), Positives = 90/271 (33%), Gaps = 56/271 (20%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
                KR+GY F    LL  A  H +   S     SY+RLEFLGD +L +     LF+ F 
Sbjct: 1258 EKFHKRMGYRFQYPRLLRSAFQHPTYPTSWEKLPSYQRLEFLGDALLDMACIDHLFHRFP 1317

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----------------- 107
             A    L+    ++VS +    +A  +     ++ SS   +                   
Sbjct: 1318 GADPQWLTEHKMAMVSNQFLGCLAVYIGFHRSLQHSSPAVQSEIASYVTEIEEALAAAKA 1377

Query: 108  -------------------CSFMTSIQADVVESLIAALYLDGGIE--VAGTFVDK----Y 142
                               CS       D +E+ + A+++D   +      F DK    +
Sbjct: 1378 AAVQEGKSESNFARDFWVDCSRPPKCLPDTIEAYVGAIFVDSSYDYQTVQDFFDKHIQFW 1437

Query: 143  WKQRALKSGKFRRDAKTEL----------QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
            ++   L      +   T L          QEW      +  +       G   + +    
Sbjct: 1438 FEDMRLYDTFANKHPVTFLGHEMQHRFRCQEWRLLTREIMVDKD--EEGGMMGEKQVVCA 1495

Query: 193  VEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            V + G   A  +  S R ++  AA + L+  
Sbjct: 1496 VMVHGQKLAHAVAQSARYSKIGAAKKALREL 1526



 Score = 74.7 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 55/163 (33%), Gaps = 38/163 (23%)

Query: 20   RSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
              L  +A T  S                   +YERLEFLGD  L +  +  ++       
Sbjct: 1065 PDLALEAFTKDSDNTDEQDVEQVNFQRGMGNNYERLEFLGDAFLKMATTIAIYTLIPDKD 1124

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIR---------------VSSDLRKDVCSFMT 112
            E E  V    L+        A E+ L  +IR               +    RKD+     
Sbjct: 1125 EFEYHVERMVLICNRNLFNNALEVKLEEYIRSMAFNRRTWYPEGLTLKRGKRKDI--RKK 1182

Query: 113  SIQ-----ADVVESLIAALYL----DGGIEVAGTFVDKYWKQR 146
             +      ADV E++I A YL     G  ++A   V +    +
Sbjct: 1183 HVLADKSIADVCEAIIGAAYLTAQEAGNFDMAIQAVTRMVNDK 1225


>gi|218196456|gb|EEC78883.1| hypothetical protein OsI_19246 [Oryza sativa Indica Group]
 gi|222630918|gb|EEE63050.1| hypothetical protein OsJ_17858 [Oryza sativa Japonica Group]
          Length = 350

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 59/275 (21%), Positives = 100/275 (36%), Gaps = 65/275 (23%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + +E+ + Y F +  LLE+ALTH S +     SY+RLEF+GD  LGL  S  L+    + 
Sbjct: 38  ARVERLLRYQFRDGRLLEEALTHQSFADDAV-SYQRLEFVGDSALGLAFSNFLYLTNPTL 96

Query: 67  KEGELSVRFNSLVSAETCSQVARELDL---------------ASFIRVSSDLRKD----- 106
             G LS    + +S E  ++VA   DL                 FI       +D     
Sbjct: 97  GPGPLSTLRAANISTEKLARVAVRHDLYPLLRRNCPRLDLLVGQFIETVKQEPEDDLSTV 156

Query: 107 --VCSFM--TSIQADVVESLIAALYLDGGIEVAGTF------------------------ 138
               S +    + AD+VE++ AA+Y+D   ++   +                        
Sbjct: 157 PYGGSVVKAPKVLADIVEAIAAAVYVDCKFDLEKLWKRLTWLHGLQEIRWTVNTNNIKDW 216

Query: 139 ----------VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
                     V ++  +  + +        T L E       +  ++K   + G      
Sbjct: 217 INNFIYGKRLVTRWLFEPIITAETIDEQPVTMLHELCQKHGKMA-QFKTWQKGGMT---- 271

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             V V ++G     G    K  A+  AA +  ++ 
Sbjct: 272 -VVNVFVAGELVGIGSSEQKVIAKLNAARDATRKL 305


>gi|13508284|ref|NP_110234.1| ribonuclease III [Mycoplasma pneumoniae M129]
 gi|2500551|sp|P75233|RNC_MYCPN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|1673968|gb|AAB95945.1| ribonuclease III [Mycoplasma pneumoniae M129]
 gi|301633525|gb|ADK87079.1| ribonuclease III [Mycoplasma pneumoniae FH]
          Length = 282

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 47/181 (25%), Positives = 89/181 (49%), Gaps = 13/181 (7%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE---SYERLEFLGDRILGLLISTLLF 60
            ++    K +     N    E A  HSS  +  ++   SY+RLEFLGD ++  +++  LF
Sbjct: 16  EKFVAFFKSLNIEPQNWQFYEDAFVHSSYVNENEDARASYDRLEFLGDALIDFIVAKKLF 75

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
             + +  EG L+     +V  E  +++ +EL+  +FI++   +         ++  DV+E
Sbjct: 76  ELYPNYNEGMLTRTKIEIVKGENLNRIGKELNFGNFIKLGKGMPYT-----ETLFGDVLE 130

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           +L+AA+Y D GIE A  FV+++  ++   S   + +  +  QE    +    P  +V+  
Sbjct: 131 ALVAAIYEDLGIEKANQFVEEHIFKKTY-SEILKYNFFSLFQE----QKLPEPRVRVSLT 185

Query: 181 S 181
           S
Sbjct: 186 S 186


>gi|19112084|ref|NP_595292.1| double-strand-specific ribonuclease Pac1 [Schizosaccharomyces pombe
           972h-]
 gi|129540|sp|P22192|PAC1_SCHPO RecName: Full=Double-strand-specific pac1 ribonuclease; AltName:
           Full=Protein hcs
 gi|4999|emb|CAA38745.1| Pac1 ribonuclease [Schizosaccharomyces pombe]
 gi|1042212|gb|AAB34897.1| double-strand-specific Pac1 ribonuclease [Schizosaccharomyces
           pombe]
 gi|2959372|emb|CAA17926.1| double-strand-specific ribonuclease Pac1 [Schizosaccharomyces
           pombe]
 gi|68697667|emb|CAJ14141.1| unnamed protein product [Schizosaccharomyces pombe]
          Length = 363

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 49/218 (22%), Positives = 85/218 (38%), Gaps = 17/218 (7%)

Query: 18  ANRSLLEKALTHSSISHSYQES-----------YERLEFLGDRILGLLISTLLFNHFDSA 66
            +  L E+   H S ++    +            ERLEFLGD    L  + ++F+ F   
Sbjct: 138 RSEKLKEQVFMHISRAYEIYPNQSNPNELLDIHNERLEFLGDSFFNLFTTRIIFSKFPQM 197

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG LS      V  E+  + AR       + +S    KD       + AD  E+ + AL
Sbjct: 198 DEGSLSKLRAKFVGNESADKFARLYGFDKTLVLSYSAEKDQLRKSQKVIADTFEAYLGAL 257

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSG---KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            LDG  E A  +V +  + +           + AK++L  +         EY+    +G 
Sbjct: 258 ILDGQEETAFQWVSRLLQPKIANITVQRPIDKLAKSKL--FHKYSTLGHIEYRWVDGAGG 315

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             +  + +    +G   A+    +++ A   AA + L+
Sbjct: 316 SAEG-YVIACIFNGKEVARAWGANQKDAGSRAAMQALE 352


>gi|51512119|gb|AAU05314.1| pac1 ribonuclease [Schizosaccharomyces pombe]
 gi|51512121|gb|AAU05315.1| pac1 ribonuclease [Schizosaccharomyces pombe]
          Length = 363

 Score =  125 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 48/218 (22%), Positives = 85/218 (38%), Gaps = 17/218 (7%)

Query: 18  ANRSLLEKALTHSSISHSYQES-----------YERLEFLGDRILGLLISTLLFNHFDSA 66
            +  L ++   H S ++    +            ERLEFLGD    L  + ++F+ F   
Sbjct: 138 RSEKLKKQVFMHISRAYEIYPNQSNPNELLDIHNERLEFLGDSFFNLFTTRIIFSKFPQM 197

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG LS      V  E+  + AR       + +S    KD       + AD  E+ + AL
Sbjct: 198 DEGSLSKLRAKFVGNESADKFARLYGFDKTLVLSYSAEKDQLRKSQKVIADTFEAYLGAL 257

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSG---KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            LDG  E A  +V +  + +           + AK++L  +         EY+    +G 
Sbjct: 258 ILDGQEETAFQWVSRLLQPKIANITVQRPIDKLAKSKL--FHKYSTLGHIEYRWVDGAGG 315

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             +  + +    +G   A+    +++ A   AA + L+
Sbjct: 316 SAEG-YVIACIFNGKEVARAWGANQKDAGSRAAMQALE 352


>gi|134084339|emb|CAK48679.1| unnamed protein product [Aspergillus niger]
          Length = 1531

 Score =  125 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 54/264 (20%), Positives = 100/264 (37%), Gaps = 52/264 (19%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDS 65
             +E+++ Y F   +LL  A TH S   ++ +   Y+RLEFLGD ++ ++    LF  F  
Sbjct: 1235 KIEEKLSYRFRYPTLLGSAFTHPSYPSAWAKVPCYQRLEFLGDSLIDMVCVEDLFARFPD 1294

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFMTSI---------- 114
                 L+    ++VS +    +A +L L + ++  S+ L+  +  +   I          
Sbjct: 1295 RDPQWLTEHKMAMVSNKFLGALAVKLGLHTHLKYFSAPLQSQITQYAEEIQTAEGESEGA 1354

Query: 115  -----------------------------QADVVESLIAALYLDG--GIEVAGTF----V 139
                                           D+VE+ + A+++D     EV   F    +
Sbjct: 1355 VDYWTVTKDPPKVMTPSALRNTANVDGQCLPDMVEAYVGAVFVDSDFNFEVIERFFRDYI 1414

Query: 140  DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP--DHDPR-FTVVVEIS 196
              +++  A+      +   T L      +FG    Y +     P  D  P      V + 
Sbjct: 1415 KPFFEDMAIYDTFANKHPTTFLHNRLTNEFGC-VNYCLKAGEMPSIDGAPAGVLAAVIVH 1473

Query: 197  GLAPAQGMDCSKRAAEQVAAAEVL 220
             +  A+G   S R A+  A+ + L
Sbjct: 1474 DVVIAEGTATSGRYAKVKASEKAL 1497



 Score = 68.2 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 63/193 (32%), Gaps = 46/193 (23%)

Query: 11   KRIGYAFANRSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTL 58
            + + +      L  +A T        H +    +      +YERLEFLGD  L +  S  
Sbjct: 1023 ESLNFTVK-LDLALEAFTKDSDNTDEHRAQQIHVQRGMGRNYERLEFLGDCFLKMATSIA 1081

Query: 59   LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-------------------- 98
            LF       E +  V    L+  +     A + ++  +IR                    
Sbjct: 1082 LFTQNPDDDEFDYHVNRMCLICNKNLFNAAVDKEIYKYIRSRGFSRLTDAARHTWYPEGL 1141

Query: 99   -VSSDLRKDVCSFMTS-------IQADVVESLIAALYLDGG----IEVAGTFVDKYWKQR 146
             +         +   S         ADV E+LI A  L GG     ++A   V       
Sbjct: 1142 KLLQGKDHSRKATTESKHALAEKTIADVCEALIGAALLSGGPDHRFDMAVKAVTTLVNSP 1201

Query: 147  ALKSGKFRRDAKT 159
            + K+ +  +D  +
Sbjct: 1202 SHKAER-WKDYIS 1213


>gi|310798327|gb|EFQ33220.1| RNase3 domain-containing protein [Glomerella graminicola M1.001]
          Length = 1532

 Score =  125 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 72/207 (34%), Gaps = 36/207 (17%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTL 58
            M       +++ +GY F   +LL  A  H S   ++    +Y+RLEFLGD +L ++    
Sbjct: 1233 MQKELARQIKENLGYEFKYPALLRSAFKHPSYPRAYEDLPNYQRLEFLGDALLDMVCVDF 1292

Query: 59   LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD------------ 106
            LF  F  A    L+    ++VS +  + +  +L L   +        +            
Sbjct: 1293 LFKKFPDADPQWLTEHKTAMVSNQFLACLCVQLGLHKHVLSGHASLLNQTQDFVGVLECA 1352

Query: 107  ----------------VCSFMTSIQADVVESLIAALYLDGGIEV--AGTF----VDKYWK 144
                                     +DVVE+ I AL++D G +      F    +  ++ 
Sbjct: 1353 KQDAAADGTFSQCYWIHVKQAPKFLSDVVEAYIGALFVDSGYDYGQVRGFFDAHIRPFFT 1412

Query: 145  QRALKSGKFRRDAKTELQEWAHAKFGV 171
              AL      R   T L        G 
Sbjct: 1413 DMALYDSFASRHPVTNLTRILQDDLGC 1439



 Score = 59.7 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 49/152 (32%), Gaps = 23/152 (15%)

Query: 31   SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90
            +      ++YE+LEFLGD  L +  +  LF       E    V    L+  +     A +
Sbjct: 1069 NFQGGMGKNYEQLEFLGDCFLKMATTIALFTQNPEDNEFAYHVERMLLICNQNLFNKAVD 1128

Query: 91   LDLASF---------------IRVSSDLRKDVCSFM---TSIQADVVESLIAALYLD--- 129
              L  +               +R+       +           ADV E+LI A YL    
Sbjct: 1129 RSLPEYVRSKSFDRRSWYPSGLRLIRGKEGSLNHRHALADKSIADVCEALIGAAYLSYAE 1188

Query: 130  -GGIEVAGTFVDKYWKQRALKSGKFRRDAKTE 160
                ++A   V    K +      +  D  T 
Sbjct: 1189 TNNFDMAIRAVTAMVKNKNHLMTSWG-DYYTA 1219


>gi|213409700|ref|XP_002175620.1| double-strand-specific pac1 ribonuclease [Schizosaccharomyces
           japonicus yFS275]
 gi|212003667|gb|EEB09327.1| double-strand-specific pac1 ribonuclease [Schizosaccharomyces
           japonicus yFS275]
          Length = 377

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 60/225 (26%), Positives = 94/225 (41%), Gaps = 10/225 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSL-LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           +  L+ S LEK++   F + S   E    HS+         ERLEFLGD       + L+
Sbjct: 150 LPKLKSSKLEKQV---FMHISRAYELYPNHSNSQDLLSVHNERLEFLGDSFFNFYTTRLI 206

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +  F    EGELS   + LV  ET  + AR       + +S    KD       + AD  
Sbjct: 207 YERFAELNEGELSKLRSKLVGNETAEKYARLYGFDKRLVLSVSAEKDELREAKKVIADTF 266

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKS---GKFRRDAKTELQEWAHAKFGVTPEYK 176
           E+ + AL LDG    A  +V +  + +  ++   G   + AK +L  +   K     EY 
Sbjct: 267 EAYLGALALDGQEREAYRWVRRLTEPKLRETVVDGPIDKRAKAKL--YHRYKHQGFIEYA 324

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
                G   D  + V  + +G   A+    +++ A   AA + L+
Sbjct: 325 WVDGKGGSSDG-YVVACKFNGDEIARSWGANQKDAGARAAMKALE 368


>gi|115462923|ref|NP_001055061.1| Os05g0271300 [Oryza sativa Japonica Group]
 gi|50878449|gb|AAT85223.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|55908895|gb|AAV67838.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578612|dbj|BAF16975.1| Os05g0271300 [Oryza sativa Japonica Group]
          Length = 344

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 59/275 (21%), Positives = 100/275 (36%), Gaps = 65/275 (23%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + +E+ + Y F +  LLE+ALTH S +     SY+RLEF+GD  LGL  S  L+    + 
Sbjct: 32  ARVERLLRYQFRDGRLLEEALTHQSFADDAV-SYQRLEFVGDSALGLAFSNFLYLTNPTL 90

Query: 67  KEGELSVRFNSLVSAETCSQVARELDL---------------ASFIRVSSDLRKD----- 106
             G LS    + +S E  ++VA   DL                 FI       +D     
Sbjct: 91  GPGPLSTLRAANISTEKLARVAVRHDLYPLLRRNCPRLDLLVGQFIETVKQEPEDDLSTV 150

Query: 107 --VCSFM--TSIQADVVESLIAALYLDGGIEVAGTF------------------------ 138
               S +    + AD+VE++ AA+Y+D   ++   +                        
Sbjct: 151 PYGGSVVKAPKVLADIVEAIAAAVYVDCKFDLEKLWKRLTWLHGLQEIRWTVNTNNIKDW 210

Query: 139 ----------VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
                     V ++  +  + +        T L E       +  ++K   + G      
Sbjct: 211 INNFIYGKRLVTRWLFEPIITAETIDEQPVTMLHELCQKHGKMA-QFKTWQKGGMT---- 265

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             V V ++G     G    K  A+  AA +  ++ 
Sbjct: 266 -VVNVFVAGELVGIGSSEQKVIAKLNAARDATRKL 299


>gi|54020492|ref|YP_115922.1| ribonuclease III [Mycoplasma hyopneumoniae 232]
 gi|53987665|gb|AAV27866.1| ribonuclease III [Mycoplasma hyopneumoniae 232]
          Length = 183

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 43/184 (23%), Positives = 75/184 (40%), Gaps = 15/184 (8%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102
           LEFLGD ++   +S +++++F    EG  +   + L S  + +   +++ L +++ +   
Sbjct: 2   LEFLGDSVINYAVSKVIYDNF-YKNEGNSTQIRSLLTSTSSLANATKKVGLMNYVLLGRG 60

Query: 103 LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY-WKQRALKSGKFRRDAKTEL 161
                      ++AD+ ES  AA+ LD G E    F+ +Y +K     + K  +D K+  
Sbjct: 61  A--SEIRENNKLKADIFESFCAAILLDQGFEKLNEFLSEYLYKDVNFDTEKQYKDPKSIF 118

Query: 162 QEWAHA-KFGVTPEY---KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           QE            Y   K+        D  F V +         G   S + AE  AA 
Sbjct: 119 QEKIQTFSTSNKIHYLHTKLV-------DGTFRVDLIWEKKKYGIGYGRSIKEAEFAAAT 171

Query: 218 EVLK 221
             L 
Sbjct: 172 NALN 175


>gi|109390419|gb|ABG33778.1| double-strand-specific Pac1 ribonuclease [Schizosaccharomyces
           pombe]
          Length = 363

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 49/218 (22%), Positives = 85/218 (38%), Gaps = 17/218 (7%)

Query: 18  ANRSLLEKALTHSSISHSYQES-----------YERLEFLGDRILGLLISTLLFNHFDSA 66
            +  L + AL H S ++    +            ERLEFLGD    L  + ++F+ F   
Sbjct: 138 RSEKLKKHALMHISRAYEIYPNQSNPNELLDIHNERLEFLGDSFFNLFTTRIIFSKFPQM 197

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            E  LS      V  E+  + AR       + +S    KD       + AD  E+ + AL
Sbjct: 198 DEESLSKLRAKFVGNESADKFARLYGFDKTLVLSYSAEKDQLRKSQKVIADTFEAYLGAL 257

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSG---KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
            LDG  E A  +V +  + +           + AK++L  +         EY+    +G 
Sbjct: 258 ILDGQEETAFQWVSRLLQPKIANITVQRPIDKLAKSKL--FHKYSTLGHIEYRWVDGAGG 315

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             +  + +    +G   A+    +++ A   AA + L+
Sbjct: 316 SAEG-YVIACIFNGKEVARAWGANQKDAGSRAAMQALE 352


>gi|170049284|ref|XP_001855187.1| endoribonuclease Dicer [Culex quinquefasciatus]
 gi|167871117|gb|EDS34500.1| endoribonuclease Dicer [Culex quinquefasciatus]
          Length = 1665

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 74/178 (41%), Gaps = 38/178 (21%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             +E+ + Y F +R+ L +ALTH+S  ++    SY++LEF+GD +L  LIS  ++    + 
Sbjct: 1412 RIERILDYTFKDRTYLLQALTHASYPTNRITGSYQQLEFVGDAVLDFLISAYIYEQNPTM 1471

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFI----------------------------- 97
              G+L+   ++LV+  T + +     L  +I                             
Sbjct: 1472 SPGQLTDLRSALVNNITLACILVRHGLHLYILSESASLTDTVSKFVAFQEAHKHEITDQV 1531

Query: 98   -RVSSDLRKDVCS-----FMTSIQADVVESLIAALYLDGG--IEVAGTFVDKYWKQRA 147
              +S +  +   +      +     DV ESLI A++LD G  +EV    +        
Sbjct: 1532 NLLSEESERCQGAMAEFVDVPKALGDVFESLIGAVFLDSGNDLEVTWRVIYGLMHHEI 1589



 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 50/134 (37%), Gaps = 9/134 (6%)

Query: 24   EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83
             KALT  S    Y    ER E LGD  L   +S  L        EG L+     LVS   
Sbjct: 1185 IKALTTKSAHDVY--DLERYELLGDAFLKFSVSLFLVKKHKEWHEGHLTAVKGQLVSNRN 1242

Query: 84   CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY- 142
                A  ++L   +++ +   K+  S      A V  ++   +     I  +   + K  
Sbjct: 1243 LLYCAMLINLPGMMKIHTFDPKNDWSPP---LASVPHAVKQKM---ASINHSARVLYKLK 1296

Query: 143  WKQRALKSGKFRRD 156
              +  +++G   +D
Sbjct: 1297 MSEEEIQAGTIEKD 1310


>gi|158706522|sp|Q4WVE3|DCL1_ASPFU RecName: Full=Dicer-like protein 1; Includes: RecName:
            Full=Endoribonuclease dcl1; Includes: RecName:
            Full=ATP-dependent helicase dcl1
          Length = 1537

 Score =  124 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 98/249 (39%), Gaps = 37/249 (14%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFD 64
             +E+ +GY F    LL  A+TH S+  ++      Y+RLEFLGD +L ++    LF  F 
Sbjct: 1255 HVEEELGYHFTYPRLLASAITHPSLPSTWGYRVPCYQRLEFLGDSLLDMVCVEDLFRRFP 1314

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSI--------- 114
                  LS    ++VS +    ++ +L     I   S+ L+  +  ++  I         
Sbjct: 1315 DRDPQWLSEHKMAMVSNKFLGALSVKLGFHRRIMAFSNPLQAQITHYVEEIETAQAESQG 1374

Query: 115  --------------QADVVESLIAALYLDG--GIEVAGTF----VDKYWKQRALKSGKFR 154
                            D+VE+ + A+++D     +V   F    +  +++  ++      
Sbjct: 1375 AVDYWVVAKDPPKCLPDMVEAYLGAIFVDSKFDFQVIEAFFERQIKPFFEDMSIYDTFAN 1434

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGP--DHDP-RFTVVVEISGLAPAQGMDCSKRAA 211
            +   T L      ++G T  Y +     P  D  P      V + G   ++    S R A
Sbjct: 1435 KHPTTFLHNKLTNEYGCT-NYCLKAGELPTIDGAPATVLAAVIVHGNVISEARSSSSRYA 1493

Query: 212  EQVAAAEVL 220
            +  A+ + L
Sbjct: 1494 KITASEKAL 1502



 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 65/206 (31%), Gaps = 50/206 (24%)

Query: 20   RSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
                 +A T        H            ++YERLEFLGD  L +  S  LF+   +  
Sbjct: 1057 PDFALEAFTKDSDNTEEHRGQQIHFQRGMGKNYERLEFLGDCFLKMATSIALFSQNPNDD 1116

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK-----------DVCSFMTSIQ- 115
            E +  V    L+  +     A +  +  +IR S    +                 T +  
Sbjct: 1117 EFDYHVNRMCLICNKNLFNTAIKKQIYRYIR-SRGFSRHIWYPDGLTLLHGKDHSTKLLS 1175

Query: 116  -----------ADVVESLIAALYLDGG----IEVAGTFVDKYWKQRALKSGKFRRDAKTE 160
                       ADV E+LI A  L GG     ++A   V       + +        K  
Sbjct: 1176 EGKHALGEKTIADVCEALIGASLLSGGPEHRFDMATKAVSALVDSPSHRVSC----WK-- 1229

Query: 161  LQEWAHAKFGVTPEYKVTFRSGPDHD 186
              E+        P+Y+     G + D
Sbjct: 1230 --EYI--TLYTLPKYQTEKHRGSEDD 1251


>gi|225447097|ref|XP_002270948.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 236

 Score =  124 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 47/151 (31%), Positives = 73/151 (48%), Gaps = 18/151 (11%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               +E+ +GY+F N+ LLE+A TH+S     Q SYERLEF+GD +L LLI+   F  + 
Sbjct: 29  SLEGVEQILGYSFTNKRLLEEAYTHASC-QKNQFSYERLEFMGDSVLSLLITKEQFFLYP 87

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-----------------DLRKDV 107
             + G L+   ++ V  E  ++VA +  L  F+R                     L  + 
Sbjct: 88  DLQPGRLTRLRSANVDKEKLARVALKHGLHRFLRHKKPKIEQQIYEFAEAIKEYPLHSNG 147

Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTF 138
              +  + ADVVES I A+++D    V   +
Sbjct: 148 QIEVPKVLADVVESTIGAVFVDCNCSVDTVW 178


>gi|242039323|ref|XP_002467056.1| hypothetical protein SORBIDRAFT_01g018890 [Sorghum bicolor]
 gi|241920910|gb|EER94054.1| hypothetical protein SORBIDRAFT_01g018890 [Sorghum bicolor]
          Length = 1586

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 57/235 (24%), Positives = 98/235 (41%), Gaps = 30/235 (12%)

Query: 1    MSALR-YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTL 58
            +S L+ +  LE ++ Y F+ + LL +A++H S+     +  Y+RLEFLGD +L LLI+  
Sbjct: 1173 LSKLKVFEELEAKLKYNFSVKGLLLEAVSHPSLQELGVDYCYQRLEFLGDSVLDLLITQH 1232

Query: 59   LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD---------------- 102
            L+        GEL+   ++LVS E  +Q     ++ S ++  S                 
Sbjct: 1233 LYATHTDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSGILLEQVTEYVRSSLEY 1292

Query: 103  -----LRKDVCSFM-TSIQADVVESLIAALYLDGGIEV--AGTFVDKYWKQRALKSGKFR 154
                       +F    +  D++ES+  A+++D    V      V+       +   K  
Sbjct: 1293 HGKENEFVQQATFKAPKVLGDIMESITGAIFIDVNFNVDLVWKIVEPLLSP-MITPDKLA 1351

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
                 EL E   +  G   + K T   G +     TV +    L  AQG D +++
Sbjct: 1352 LPPYRELLELC-SHLGCFIKSKCTS-KGEELIIEMTVQLR-DELLIAQGHDRNRK 1403



 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 58/168 (34%), Gaps = 48/168 (28%)

Query: 21   SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
            SL+ +A+T  ++      S ERLE LGD +L  +I   LF  +    EG LS   +  V 
Sbjct: 983  SLILEAIT--TLRCCETFSLERLELLGDSVLKYVIGCDLFLRYPMKHEGHLSDMRSKAVC 1040

Query: 81   AETCSQVARELDLASFIR------------------------------------------ 98
              T  +      L  +IR                                          
Sbjct: 1041 NATLHKHGICRSLQGYIRDTAFDPRRWVAPGQISLRPFPCNCGIETAFVPFTGEYISDDP 1100

Query: 99   ---VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143
               V     +      +   +D VE+L+ A Y+ GGI  A  +V +++
Sbjct: 1101 SFIVGKPCDRGHRWMCSKTVSDCVEALVGAYYVGGGI-TAAIWVMRWF 1147


>gi|331250710|ref|XP_003337961.1| hypothetical protein PGTG_19538 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|309316951|gb|EFP93542.1| hypothetical protein PGTG_19538 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1489

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 69/273 (25%), Positives = 110/273 (40%), Gaps = 56/273 (20%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
            L+   LE++IGY F  + LL +ALTH S +      YER E+LGD ++ + I    +  F
Sbjct: 1107 LKCQALEEKIGYVFKEKLLLVQALTHRSANSFMTNCYEREEWLGDAVIDMWIVEHAYKRF 1166

Query: 64   DSAKEGELSVRFNSLVSAETCSQVA-RELDLASFIRVSSDLRKDVCSFM----------- 111
            D A   EL++    +VS  +   +A ++L L   I  +S+  +  C+             
Sbjct: 1167 DHATAEELTLARAKVVSNGSLGFLALKKLGLQEIIMHASENFEQACTEAIEAIKPFAKIE 1226

Query: 112  ---------------TSIQADVVESLIAALYLDGGIEV--AGTFVDKYWKQRALKSGKF- 153
                             I  DV+E+++ A+++D G  +  A   +D  ++       +  
Sbjct: 1227 EYFSTIDNLFVVFDPPKILNDVLEAIVGAVFVDSGFNLQSAYRTLDIIFEDVIPGLSRLV 1286

Query: 154  RRDAKT---EL--QEWA---------HAKFGVTPEY---KVTFRS----GPDHDPRFTVV 192
             RD  +    L  Q               F + P +   + T R     G   DP  +V 
Sbjct: 1287 ARDPLSTMLRLRDQYQCAELRRISSKQMNFNLCPIFLTGRTTIREPNPNGETKDPI-SVK 1345

Query: 193  V---EISGLAPAQGMDCSK-RAAEQVAAAEVLK 221
            V   E+ G   A G   S    AEQ A+ E LK
Sbjct: 1346 VCRIELHGQEIASGRHKSSASVAEQRASLEALK 1378



 Score = 62.8 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/151 (27%), Positives = 61/151 (40%), Gaps = 23/151 (15%)

Query: 2    SALRYSTLEKRIGYAFANRSLL--EKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
             +L+ +TL KR+   F   SLL   +ALT           Y+ LE LGD  L L  S  +
Sbjct: 919  DSLQATTLFKRLD--FPTISLLHGIQALTPP--GGGVPWDYQTLETLGDAFLKLATSVHV 974

Query: 60   FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKD 106
            +       EG++S   +  V      + A + +L + I                      
Sbjct: 975  YLSHLKKGEGDMSHVRSRSVDNAYLRRKAIQANLPASILSQRFRTDRFRDPQTEDGKELP 1034

Query: 107  VCSFMTSI----QADVVESLIAALYLDGGIE 133
              +F   I     +DVVE+L+ A +L GGIE
Sbjct: 1035 NGNFSRKIPKRVLSDVVEALLGAGFLTGGIE 1065


>gi|320527636|ref|ZP_08028810.1| RNase3 domain protein [Solobacterium moorei F0204]
 gi|320131957|gb|EFW24513.1| RNase3 domain protein [Solobacterium moorei F0204]
          Length = 373

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 62/272 (22%), Positives = 94/272 (34%), Gaps = 57/272 (20%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHF- 63
            + ++  IGY F N+ LLE+A T  S S     E  E LEF+GD+ L + I  +L   F 
Sbjct: 7   INDIQNIIGYTFKNQELLEQAFTRRSYSMENGGEHNEVLEFIGDKALDIAIVKILSEEFG 66

Query: 64  ------------------------DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99
                                       EGEL+     +V   T S     L L  ++ +
Sbjct: 67  YFNKSEQRRSNYYYSPKVYDGTFSSDKDEGELTEIKKRIVKKTTLSDAIDNLGLQHYLIM 126

Query: 100 SSDLRKDVCSFMTSIQADVVESLIAALYLDG--GIEVAGTFVDKYWKQRALKSGKFRRDA 157
               RK       S + D+ E++I A+ LD    I +    V+   +   +  G      
Sbjct: 127 GRGDRKKHVERSNSTKEDLFEAIIGAIALDSRWDINMIQETVENMIEIDDI-IGSDEDSY 185

Query: 158 KTELQEWAHAKFGVTPEYKV-------TFRSGPDHDP---------RFTVVVEISGLAPA 201
             E+Q W+   + V P+Y V            PD            +F   V  S    A
Sbjct: 186 IEEIQNWSLKHYDVLPDYSVCNYLPSEMNIGTPDWAKPNTMWSLINQFKRGVFDSNTQYA 245

Query: 202 Q------------GMDCSKRAAEQVAAAEVLK 221
                        G   SK  A++ A+    +
Sbjct: 246 SLLILEDVPCCFIGYGNSKNQAKEEASRLAYE 277



 Score = 41.2 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 39/116 (33%), Gaps = 9/116 (7%)

Query: 107 VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH 166
           +    +  QA    S +A  YLD          D  W  +       +R +  +L+  A 
Sbjct: 258 IGYGNSKNQAKEEASRLAYEYLD--------EHDLLWTIQDEIENPCKRMSVNQLETLAR 309

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLK 221
             +   P Y        D +P +     I            SK+ A++ AA  +LK
Sbjct: 310 RGYFSLPTYNFYEDHDEDGNPVWKCECHIDEENIFCWSTASSKKDAKKDAAWGMLK 365


>gi|295657108|ref|XP_002789127.1| abhydrolase domain-containing protein [Paracoccidioides
           brasiliensis Pb01]
 gi|226284541|gb|EEH40107.1| abhydrolase domain-containing protein [Paracoccidioides
           brasiliensis Pb01]
          Length = 740

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 56/226 (24%), Positives = 98/226 (43%), Gaps = 25/226 (11%)

Query: 19  NRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           ++SL     TH  ++            +++YERLE LGD  + +  + L+++ F   + G
Sbjct: 148 DKSLQTAIFTHEGVNDPTNTTTTTTSTEKNYERLELLGDAYIEIFATRLVWDTFPRLRAG 207

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
            LS     LV  ET ++ A    L   ++V++++R+      T ++ D+ E+ +AA+ L 
Sbjct: 208 RLSQIREMLVKNETLAEYATRYGLDRRLQVAAEIRRQ-AKTWTKVRGDLFEAYVAAVILS 266

Query: 130 G---GIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG-- 182
               G+E+   ++ + W  R   ++  +     K EL +    K GV   Y V  R G  
Sbjct: 267 HPKRGVEMVEEWLTQLWIPRLEGVERERPVLRYKEELAKMVMDK-GVRVRY-VDEREGVQ 324

Query: 183 -PDHDPRFTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLKR 222
                  F V V + G     +    G   SK  A   AA + L+ 
Sbjct: 325 RKGGLQTFFVGVYLDGWGFRDVCLGTGTGMSKVIAGNEAARKALEN 370


>gi|256077012|ref|XP_002574802.1| ribonuclease III [Schistosoma mansoni]
 gi|238660017|emb|CAZ31035.1| ribonuclease III, putative [Schistosoma mansoni]
          Length = 907

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 51/170 (30%), Positives = 83/170 (48%), Gaps = 29/170 (17%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTH-SSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           R+  L++++GY F    LL +A+TH SSI+  Y  +Y+RLEFLGD ILG +IS  LF   
Sbjct: 683 RFFQLQEKLGYYFKGIELLAEAMTHQSSINKQYWGNYQRLEFLGDSILGHIISNYLFQKC 742

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI--------- 114
            ++  G L+   +++VS    + V  E D+  FI   +   K     + SI         
Sbjct: 743 PNSSPGALTTARSTVVSNINLANVVVEHDIYPFIDFGNCSLKACIDDIKSIHRQTDSHFE 802

Query: 115 -----------------QADVVESLIAALYLD--GGIEVAGTFVDKYWKQ 145
                             ADV ES++ A+++D  G  +VA + + ++  +
Sbjct: 803 RIELITKKVSSGLNVKVLADVFESILGAIFVDSNGNHQVASSIIHRFLGK 852



 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 50/148 (33%), Gaps = 23/148 (15%)

Query: 39  SYERLEFLGDRILGLLISTLLFNHFD-SAKEGELSVRFNSLVSAETCSQVARELDLASF- 96
             ERLEF GD  L  + +  ++      A EG LS +  SLVS      +A +L    + 
Sbjct: 546 DLERLEFYGDSFLHFIATLCVYGTNPQDADEGCLSSKRGSLVSNAHLCDIACDLKWYEYC 605

Query: 97  --IRVSSDLR-----------------KDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137
                S                     +          AD+VE+LI    L  G+  A  
Sbjct: 606 TGQTFSPPEHFLPPCYSVASEACKYDPRLYTRLTDKSLADMVEALIGCFLLRSGLSAAFN 665

Query: 138 FVDKYWKQRALKSGKFRRDAKTELQEWA 165
            +  +     +     +R    +LQE  
Sbjct: 666 LLHYFQICPEIILELNQRFF--QLQEKL 691


>gi|154301554|ref|XP_001551189.1| hypothetical protein BC1G_10104 [Botryotinia fuckeliana B05.10]
 gi|150855766|gb|EDN30958.1| hypothetical protein BC1G_10104 [Botryotinia fuckeliana B05.10]
          Length = 1842

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 45/256 (17%), Positives = 79/256 (30%), Gaps = 48/256 (18%)

Query: 15   YAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            Y F +  LL  A  H +    +     Y+RLEFLGD +L +     LF++  +     L+
Sbjct: 1545 YHFKHPRLLRSAFIHPAYLFIYEQIPCYQRLEFLGDSLLDMACVNFLFHNHPTKDPQWLT 1604

Query: 73   VRFNSLVSAETCSQVARELDLASFI------------------------------RVSSD 102
                ++VS +    +  +L     +                              RV   
Sbjct: 1605 EHKMAIVSNQFLGALCVKLGFHKHLLTLDSQVQKMIADYSSDINEALIQAKTDAKRVGKV 1664

Query: 103  LRKD------VCSFMTSIQADVVESLIAALYLDGGIEV--AGTF----VDKYWKQRALKS 150
                                D+VE+ I A+++D   +      F    +  Y++   +  
Sbjct: 1665 EDDYARDYWIAVRQPPKCLPDIVEAFIGAIFVDSEYDYGEVEKFFEMHIRWYFEDMGIYD 1724

Query: 151  GKFRRDAKTELQEWAHAKFGVTPEYKVTFRS--GPDHDPRFTVV-VEISGLAPAQGMDCS 207
                +   T L  +     G   ++    +   G D      V  V I     +     S
Sbjct: 1725 TYANKHPTTFLTNFLQKNMGCE-DWAPVSKEVPGEDGRKNVVVCGVIIHNKVVSTATAES 1783

Query: 208  KRAAEQVAAAEVLKRE 223
             R A   AA   L++ 
Sbjct: 1784 MRYARVGAARNALRKL 1799



 Score = 62.8 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 51/141 (36%), Gaps = 30/141 (21%)

Query: 20   RSLLEKALT--------H----SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
              L  +A+T        H    ++       +YERLEFLGD  L +  S  L+     + 
Sbjct: 1344 PDLALEAVTKDSDNSGEHGEEQTNFQRGMGNNYERLEFLGDCFLKMGTSISLYGLNPDSD 1403

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIRV-----------SSDLRKDVCSFMTSIQ- 115
            E    V    L+  +     A +L+L  +IR              +L +   +   +   
Sbjct: 1404 EFRYHVDRMCLICNKNLFNTALKLELYKYIRSAAFNRRAWYPEGPELLRGKTATAPNTHK 1463

Query: 116  ------ADVVESLIAALYLDG 130
                  ADV E++I A  L  
Sbjct: 1464 LGDKSVADVCEAMIGAALLSH 1484


>gi|89114026|gb|ABD61604.1| Dicer-1 [Drosophila melanogaster]
          Length = 2043

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 2/108 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  +I+  L+    
Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYIITRHLYEDPR 1995

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM 111
                G L+   ++LV+    + +A       F R +S  L   +  F+
Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFV 2043



 Score = 65.5 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 9/119 (7%)

Query: 11   KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
              +G+   + S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+
Sbjct: 1657 DLVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1714

Query: 71   LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125
            LS   +  V+     ++ R   L  ++  +     D     C ++     ++ ++LI A
Sbjct: 1715 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1770


>gi|328772805|gb|EGF82843.1| hypothetical protein BATDEDRAFT_23044 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 1492

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 94/242 (38%), Gaps = 44/242 (18%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHFDSA 66
             +E  + Y F ++S+L +ALTHSS S S    +Y+RLEFLGD +L  +I+  L+    S+
Sbjct: 1222 RIEAVLNYTFQDKSILWEALTHSSSSFSICGLNYQRLEFLGDAVLSFIITKYLYTQLGSS 1281

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-----------------------DL 103
              G +S   + +V  +  + V+  L L  ++RV                          +
Sbjct: 1282 SPGVISHLKSEMVCNQFLACVSIRLGLIDWLRVKKSDTVWIVDAYAQQVIEHLSQPADSI 1341

Query: 104  RKDVCSFM---TSIQADVVESLIAALYLDG--GIEVAGTFVDK-YWKQRALKSGKFRRDA 157
            +K   + M     I  DV E+++ A+++D    IE    FV     K       +  +D 
Sbjct: 1342 QKIFWAHMTTAPKICGDVYEAILGAIFVDSKFSIEKVDEFVLNSLIKPWWDHFSQIVQDG 1401

Query: 158  KTELQ----E---WAHAKFGV-TPEYKVTFRSGPDHDPRFTVV-VEISGLAPAQGMDCSK 208
            K  LQ    E              EY  T           TV  V+       + +   K
Sbjct: 1402 KVVLQNSIVELRDLVAEHLKCSAVEYTYTHIQNTA-----TVAIVKCHDKIIGKAIGTGK 1456

Query: 209  RA 210
            R 
Sbjct: 1457 RD 1458



 Score = 72.4 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 41/144 (28%), Positives = 57/144 (39%), Gaps = 16/144 (11%)

Query: 17   FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
            F N   L+  L  SS       SYERLE LGD  L +  S  LF    S  EG L+    
Sbjct: 1048 FINIETLQTVLVASST--DLPYSYERLEILGDSFLKIHQSLHLFALNPSQDEGWLTTSRM 1105

Query: 77   SLVSAETCSQVARELDLASFIRVSSDLRK----------DVCSFMTSIQADVVESLIAAL 126
                     + A E+ L   I  +   RK           + S    I ADV E++I   
Sbjct: 1106 VAEQNLELCRRATEVGLQGLILTTRFSRKQWVPPAKGHDSMQSMPKKILADVTEAIIGGC 1165

Query: 127  YLDGGI----EVAGTFVDKYWKQR 146
             +DGGI    E   + +++ ++  
Sbjct: 1166 LIDGGIVGASEAVRSLLNRDYQSE 1189


>gi|328716581|ref|XP_003245985.1| PREDICTED: endoribonuclease Dcr-1-like isoform 2 [Acyrthosiphon
            pisum]
          Length = 1489

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/131 (29%), Positives = 68/131 (51%), Gaps = 4/131 (3%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            + + E+ +GY F +RS L +A+TH+S   +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1357 FESFEQHLGYHFQDRSYLLQAMTHASYYPNRLTDCYQRLEFLGDAVLDYLITRHLYEDKR 1416

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQADVVESLI 123
                G L+   ++LV+    + +A       + + +S  L   VC F+T IQ +   ++ 
Sbjct: 1417 QHSPGALTDLRSALVNNTIFASLAVRNGFHKYFKHLSPGLSDVVCRFVT-IQEENGHTID 1475

Query: 124  AALYLDGGIEV 134
              + L G + V
Sbjct: 1476 EEI-LSGAMNV 1485



 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 2/89 (2%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             S+L +ALT S+ +     + ERLE +GD  L   I+  L+   D+  EG+LS   +  V
Sbjct: 1124 PSVLLQALTMSNANDGI--NLERLETIGDSFLKYAITAYLYCTHDNVHEGKLSHLRSKQV 1181

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDVC 108
            S     ++ +       +  +     D  
Sbjct: 1182 SNLNLYRLGKLKMFGERMISTKFEPHDNW 1210


>gi|331236185|ref|XP_003330752.1| hypothetical protein PGTG_12289 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|309309742|gb|EFP86333.1| hypothetical protein PGTG_12289 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1470

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 60/263 (22%), Positives = 96/263 (36%), Gaps = 58/263 (22%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
              +E++I Y F  +  L +ALTH S +      YER E+LGD ++ + I    +  FD+A
Sbjct: 1115 EQIERKINYVFKEKLFLVQALTHRSANSFLTNCYEREEWLGDAVIDMWIVEHAYKRFDNA 1174

Query: 67   KEGELSVRFNSLVSAETCSQVA-RELDLASFIRVSSDLRKDVCSFM-------------- 111
               ELS+    +    +   +A ++L L  FI   SD     C+                
Sbjct: 1175 TADELSLARAKVACNGSLGFLAIKKLGLHEFIMHKSDNFHQACAEAIEAIEPFTKISEFF 1234

Query: 112  ------------TSIQADVVESLIAALYLDGGIE--VAGTFVDKYWKQRALKSGKF-RRD 156
                          I  D +E+++ A+++D G+    A   +D  ++       +   RD
Sbjct: 1235 SNINNLFVVFDPPKILNDALEAIVGAVFVDSGLNLPTAYRVLDVIFEDVTPSLSRLAARD 1294

Query: 157  AKTEL-------Q--EWAHAK---FGVTPEYKVTFRSGPDHDPRFTVVVEI-----SGLA 199
              + L       Q  E            PE       G +  P   V V +      G  
Sbjct: 1295 PVSTLLRLRDRYQCTELLRTTTTINEPNPE-------GEEKTP---VSVRVCRIEFHGQQ 1344

Query: 200  PAQGMD-CSKRAAEQVAAAEVLK 221
               G    S   AEQ A+ E +K
Sbjct: 1345 IGIGRHQSSTSVAEQRASLEAIK 1367



 Score = 39.7 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 7/103 (6%)

Query: 1    MSALRYSTLEKRIGYA---FANRSLL--EKALTHSSISHSYQESYERLEFLGDRILGLLI 55
            ++ L +  L+ +  +    F   SL     ALT   +       Y+ LE +GD  L L  
Sbjct: 918  LTRLLHDALQAKFLFKRLDFPAISLPHGIHALTPPGVG--VPWDYQTLETVGDAFLKLAT 975

Query: 56   STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
            S  ++       EG++S      +      + A + +L   I 
Sbjct: 976  SVHVYISHLRKGEGDMSHVRARSIDNAYLRRKAVQANLPGSIL 1018


>gi|242215871|ref|XP_002473747.1| predicted protein [Postia placenta Mad-698-R]
 gi|220727142|gb|EED81071.1| predicted protein [Postia placenta Mad-698-R]
          Length = 1725

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 84/185 (45%), Gaps = 25/185 (13%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            ++ L++ +GY F +  LL +A+TH S +     SY+RLEFLGD ++ L +   L+N F  
Sbjct: 1116 FTLLQESLGYRFRSGRLLLEAMTHPSFNSFETSSYQRLEFLGDAVVDLAVMRYLYNKFPQ 1175

Query: 66   AKEGELSVRFNSLVSAETCSQVA-RELDLASFIRVS------------------SDLRKD 106
            A  G+LS   +  V A + + VA + L L   + V+                  S+    
Sbjct: 1176 ATSGQLSWARSRAVCAPSLASVAVKRLGLHKLLLVNNVELSIAINNYVPILEELSNEELI 1235

Query: 107  VCSFM---TSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQ-RALKSGKFRRDAKTE 160
              ++        +DV+ES++ A+ +D     E+A +  +        + S    RD  +E
Sbjct: 1236 HNAWKQDPPKAISDVMESVLGAVLVDSDYNWEIACSVSEMVMGDLLVVLSPNLPRDPISE 1295

Query: 161  LQEWA 165
            L  W 
Sbjct: 1296 LMIWV 1300



 Score = 74.3 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 2/77 (2%)

Query: 21   SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
             LL +ALT  S +  +  + +RLE LGD +L L     LFN F    EG+L     + VS
Sbjct: 949  DLLIQALTIPSANAGF--NNQRLETLGDSVLKLTTVVHLFNRFPFRHEGQLDTLRRNSVS 1006

Query: 81   AETCSQVARELDLASFI 97
              T    A+E+ L  ++
Sbjct: 1007 NRTLLARAKEVGLEEYL 1023


>gi|145613552|ref|XP_363615.2| hypothetical protein MGG_01541 [Magnaporthe oryzae 70-15]
 gi|145020615|gb|EDK04744.1| hypothetical protein MGG_01541 [Magnaporthe oryzae 70-15]
          Length = 1534

 Score =  122 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 48/266 (18%), Positives = 83/266 (31%), Gaps = 54/266 (20%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            S ++ ++GY F N  LL  A  H S    +    SY+RLEFLGD +L ++    LF    
Sbjct: 1187 SQIKNKMGYRFKNPRLLRCAFMHPSYPRQYENIPSYQRLEFLGDSLLDMVCVDYLFKKHP 1246

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------------- 99
                  L+    ++VS +    VA  L     +                           
Sbjct: 1247 DKDPQWLTEHKMAMVSNQFFGCVAVGLGFHRHLIHMQPALGGSITEWAELVTKKREEARQ 1306

Query: 100  -----SSDLRKD------VCSFMTSIQADVVESLIAALYLDGGIE--VAGTFVDKYWKQR 146
                                        D++E+ + AL++D G +      F D++ K  
Sbjct: 1307 LAVRRGQREEDYARDFWIEVHHPPKCLPDILEAYVGALFVDTGYDYSAVVGFFDRHIKPY 1366

Query: 147  ALKSGKFR----RDAKTELQEWAHAKFGVTPEYKVTFRSGPD---------HDPRFTVVV 193
                  +     +   T +      +FG +  +++     PD            +     
Sbjct: 1367 FADMSIYDMYSSKHPVTHITSIITTQFGCS-SFRLMVHEIPDDVQGEGLVTGAVKVVAAC 1425

Query: 194  EISGLAPAQGMDCSKRAAEQVAAAEV 219
             I G      +  S R A+   A + 
Sbjct: 1426 MIHGEVRCHAVAASGRYAKLAVAKQA 1451



 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 55/154 (35%), Gaps = 26/154 (16%)

Query: 31   SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90
            +      ++YERLEFLGD  L +  S  L+       E E  V     +  +     A E
Sbjct: 1016 NFQSGMGQNYERLEFLGDCFLKMATSIALYTLV-EGDEFEYHVERMLDICNKNLLNWALE 1074

Query: 91   LDLASFIR---------------VSSD---LRKDVCSFMTSIQADVVESLIAALYLDGGI 132
             +L   IR               +         D  +      ADV E+LI A YL    
Sbjct: 1075 SNLQEHIRSKSFNRRTWYPPGLKLLKGKKTEVDDEHALGDKSIADVCEALIGAAYLTAQA 1134

Query: 133  EVAGTFVDKYWKQRALKSGKFRRDAKTE-LQEWA 165
            + +  F        A+K+      +KT  +Q W+
Sbjct: 1135 QSSPNF------DLAVKAVTVMTHSKTHTMQAWS 1162


>gi|158706447|sp|A4RKC3|DCL1_MAGO7 RecName: Full=Dicer-like protein 1; Includes: RecName:
            Full=Endoribonuclease DCL1; Includes: RecName:
            Full=ATP-dependent helicase DCL1
          Length = 1591

 Score =  122 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 48/266 (18%), Positives = 83/266 (31%), Gaps = 54/266 (20%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            S ++ ++GY F N  LL  A  H S    +    SY+RLEFLGD +L ++    LF    
Sbjct: 1244 SQIKNKMGYRFKNPRLLRCAFMHPSYPRQYENIPSYQRLEFLGDSLLDMVCVDYLFKKHP 1303

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------------- 99
                  L+    ++VS +    VA  L     +                           
Sbjct: 1304 DKDPQWLTEHKMAMVSNQFFGCVAVGLGFHRHLIHMQPALGGSITEWAELVTKKREEARQ 1363

Query: 100  -----SSDLRKD------VCSFMTSIQADVVESLIAALYLDGGIE--VAGTFVDKYWKQR 146
                                        D++E+ + AL++D G +      F D++ K  
Sbjct: 1364 LAVRRGQREEDYARDFWIEVHHPPKCLPDILEAYVGALFVDTGYDYSAVVGFFDRHIKPY 1423

Query: 147  ALKSGKFR----RDAKTELQEWAHAKFGVTPEYKVTFRSGPD---------HDPRFTVVV 193
                  +     +   T +      +FG +  +++     PD            +     
Sbjct: 1424 FADMSIYDMYSSKHPVTHITSIITTQFGCS-SFRLMVHEIPDDVQGEGLVTGAVKVVAAC 1482

Query: 194  EISGLAPAQGMDCSKRAAEQVAAAEV 219
             I G      +  S R A+   A + 
Sbjct: 1483 MIHGEVRCHAVAASGRYAKLAVAKQA 1508



 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 55/154 (35%), Gaps = 26/154 (16%)

Query: 31   SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90
            +      ++YERLEFLGD  L +  S  L+       E E  V     +  +     A E
Sbjct: 1073 NFQSGMGQNYERLEFLGDCFLKMATSIALYTLV-EGDEFEYHVERMLDICNKNLLNWALE 1131

Query: 91   LDLASFIR---------------VSSD---LRKDVCSFMTSIQADVVESLIAALYLDGGI 132
             +L   IR               +         D  +      ADV E+LI A YL    
Sbjct: 1132 SNLQEHIRSKSFNRRTWYPPGLKLLKGKKTEVDDEHALGDKSIADVCEALIGAAYLTAQA 1191

Query: 133  EVAGTFVDKYWKQRALKSGKFRRDAKTE-LQEWA 165
            + +  F        A+K+      +KT  +Q W+
Sbjct: 1192 QSSPNF------DLAVKAVTVMTHSKTHTMQAWS 1219


>gi|89114046|gb|ABD61614.1| Dicer-1 [Drosophila simulans]
          Length = 2043

 Score =  122 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 2/108 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM 111
                G L+   ++LV+    + +A       F R +S  L   +  F+
Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFV 2043



 Score = 65.5 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 9/119 (7%)

Query: 11   KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
              +G+   + S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+
Sbjct: 1657 DLVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1714

Query: 71   LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125
            LS   +  V+     ++ R   L  ++  +     D     C ++     ++ ++LI A
Sbjct: 1715 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1770


>gi|89114024|gb|ABD61603.1| Dicer-1 [Drosophila melanogaster]
          Length = 2043

 Score =  122 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 2/108 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM 111
                G L+   ++LV+    + +A       F R +S  L   +  F+
Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFV 2043



 Score = 65.5 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 9/119 (7%)

Query: 11   KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
              +G+   + S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+
Sbjct: 1657 DLVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1714

Query: 71   LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125
            LS   +  V+     ++ R   L  ++  +     D     C ++     ++ ++LI A
Sbjct: 1715 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1770


>gi|89114020|gb|ABD61601.1| Dicer-1 [Drosophila melanogaster]
          Length = 2043

 Score =  122 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 2/108 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM 111
                G L+   ++LV+    + +A       F R +S  L   +  F+
Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFV 2043



 Score = 65.5 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 9/119 (7%)

Query: 11   KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
              +G+   + S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+
Sbjct: 1657 DLVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1714

Query: 71   LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125
            LS   +  V+     ++ R   L  ++  +     D     C ++     ++ ++LI A
Sbjct: 1715 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1770


>gi|89114022|gb|ABD61602.1| Dicer-1 [Drosophila melanogaster]
          Length = 2043

 Score =  122 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 2/108 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM 111
                G L+   ++LV+    + +A       F R +S  L   +  F+
Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFV 2043



 Score = 65.5 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 9/119 (7%)

Query: 11   KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
              +G+   + S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+
Sbjct: 1657 DLVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1714

Query: 71   LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125
            LS   +  V+     ++ R   L  ++  +     D     C ++     ++ ++LI A
Sbjct: 1715 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1770


>gi|89114040|gb|ABD61611.1| Dicer-1 [Drosophila simulans]
          Length = 2043

 Score =  122 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 2/108 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM 111
                G L+   ++LV+    + +A       F R +S  L   +  F+
Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFV 2043



 Score = 65.5 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 9/119 (7%)

Query: 11   KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
              +G+   + S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+
Sbjct: 1657 DLVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1714

Query: 71   LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125
            LS   +  V+     ++ R   L  ++  +     D     C ++     ++ ++LI A
Sbjct: 1715 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1770


>gi|89114050|gb|ABD61616.1| Dicer-1 [Drosophila simulans]
          Length = 2043

 Score =  122 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 2/108 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM 111
                G L+   ++LV+    + +A       F R +S  L   +  F+
Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFV 2043



 Score = 65.5 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 9/119 (7%)

Query: 11   KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
              +G+   + S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+
Sbjct: 1657 DLVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1714

Query: 71   LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125
            LS   +  V+     ++ R   L  ++  +     D     C ++     ++ ++LI A
Sbjct: 1715 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1770


>gi|89114048|gb|ABD61615.1| Dicer-1 [Drosophila simulans]
          Length = 2043

 Score =  122 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 2/108 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM 111
                G L+   ++LV+    + +A       F R +S  L   +  F+
Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFV 2043



 Score = 65.5 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 9/119 (7%)

Query: 11   KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
              +G+   + S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+
Sbjct: 1657 DLVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1714

Query: 71   LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125
            LS   +  V+     ++ R   L  ++  +     D     C ++     ++ ++LI A
Sbjct: 1715 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1770


>gi|89114042|gb|ABD61612.1| Dicer-1 [Drosophila simulans]
          Length = 2043

 Score =  122 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 2/108 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM 111
                G L+   ++LV+    + +A       F R +S  L   +  F+
Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFV 2043



 Score = 65.5 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 9/119 (7%)

Query: 11   KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
              +G+   + S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+
Sbjct: 1657 DLVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1714

Query: 71   LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125
            LS   +  V+     ++ R   L  ++  +     D     C ++     ++ ++LI A
Sbjct: 1715 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1770


>gi|89114038|gb|ABD61610.1| Dicer-1 [Drosophila simulans]
          Length = 2043

 Score =  122 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 2/108 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM 111
                G L+   ++LV+    + +A       F R +S  L   +  F+
Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFV 2043



 Score = 65.5 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 9/119 (7%)

Query: 11   KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
              +G+   + S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+
Sbjct: 1657 DLVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1714

Query: 71   LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125
            LS   +  V+     ++ R   L  ++  +     D     C ++     ++ ++LI A
Sbjct: 1715 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1770


>gi|89114032|gb|ABD61607.1| Dicer-1 [Drosophila melanogaster]
          Length = 2043

 Score =  122 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 2/108 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM 111
                G L+   ++LV+    + +A       F R +S  L   +  F+
Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFV 2043



 Score = 65.5 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 9/119 (7%)

Query: 11   KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
              +G+   + S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+
Sbjct: 1657 DLVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1714

Query: 71   LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125
            LS   +  V+     ++ R   L  ++  +     D     C ++     ++ ++LI A
Sbjct: 1715 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1770


>gi|89114044|gb|ABD61613.1| Dicer-1 [Drosophila simulans]
          Length = 2043

 Score =  122 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 2/108 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM 111
                G L+   ++LV+    + +A       F R +S  L   +  F+
Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFV 2043



 Score = 65.5 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 9/119 (7%)

Query: 11   KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
              +G+   + S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+
Sbjct: 1657 DLVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1714

Query: 71   LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125
            LS   +  V+     ++ R   L  ++  +     D     C ++     ++ ++LI A
Sbjct: 1715 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1770


>gi|89114036|gb|ABD61609.1| Dicer-1 [Drosophila simulans]
          Length = 2043

 Score =  122 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 2/108 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM 111
                G L+   ++LV+    + +A       F R +S  L   +  F+
Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFV 2043



 Score = 65.5 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 9/119 (7%)

Query: 11   KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
              +G+   + S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+
Sbjct: 1657 DLVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1714

Query: 71   LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125
            LS   +  V+     ++ R   L  ++  +     D     C ++     ++ ++LI A
Sbjct: 1715 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1770


>gi|89114030|gb|ABD61606.1| Dicer-1 [Drosophila melanogaster]
          Length = 2043

 Score =  122 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 2/108 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM 111
                G L+   ++LV+    + +A       F R +S  L   +  F+
Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFV 2043



 Score = 65.5 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 9/119 (7%)

Query: 11   KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
              +G+   + S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+
Sbjct: 1657 DLVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1714

Query: 71   LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125
            LS   +  V+     ++ R   L  ++  +     D     C ++     ++ ++LI A
Sbjct: 1715 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1770


>gi|89114034|gb|ABD61608.1| Dicer-1 [Drosophila melanogaster]
          Length = 2043

 Score =  122 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 2/108 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1936 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM 111
                G L+   ++LV+    + +A       F R +S  L   +  F+
Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFV 2043



 Score = 65.5 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 9/119 (7%)

Query: 11   KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
              +G+   + S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+
Sbjct: 1657 DLVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1714

Query: 71   LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125
            LS   +  V+     ++ R   L  ++  +     D     C ++     ++ ++LI A
Sbjct: 1715 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1770


>gi|78099743|gb|ABB20894.1| dicer-like protein [Oryza sativa Indica Group]
          Length = 1116

 Score =  122 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 44/185 (23%), Positives = 76/185 (41%), Gaps = 24/185 (12%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHF 63
               LE ++ Y F+ + LL +A+TH S+     +  Y+RLEFLGD +L LL++  L+   
Sbjct: 720 DIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQRLEFLGDSVLDLLLTRHLYATH 779

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-------------LRKDVCS- 109
                GEL+   ++LVS E  +Q     ++ S ++  S              L       
Sbjct: 780 TDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSGILLGQITEYVRSNLECQGKES 839

Query: 110 --------FMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTE 160
                    +  +  D++ES+  A++LD    V   + + +      +   K       E
Sbjct: 840 EFLQHTTCKVPKVLGDIMESIAGAVFLDTDFNVDMVWEIFEPLLSPLITPDKLALPPYRE 899

Query: 161 LQEWA 165
           L E  
Sbjct: 900 LLELC 904



 Score = 68.6 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 72/204 (35%), Gaps = 58/204 (28%)

Query: 7   STLEKRIGYAFANR--SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           S L + IGY   +   +L+ +A+T  ++      S ERLE LGD +L  ++   LF  + 
Sbjct: 512 SQLRREIGYN-QHIPVTLILEAIT--TLRCCETFSLERLELLGDSVLKYVVGCDLFLRYP 568

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-------------------------- 98
              EG+LS   +  V   T  +      L  ++R                          
Sbjct: 569 MKHEGQLSDMRSKAVCNATLHKHGIWRSLQGYVRDNAFDPRRWVAPGQISLRPFPCNCGI 628

Query: 99  -------------------VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
                              V     +      +   +D VE+L+ A Y+ GGI  A  +V
Sbjct: 629 ETAFVPSHRRYIRDDPSFVVGKPCDRGHRWMCSKTISDCVEALVGAYYVGGGI-AAALWV 687

Query: 140 DKYWKQRALKSGKFRRDAKTELQE 163
            +++          + D K  LQE
Sbjct: 688 MRWFG------IDIKCDMK-LLQE 704


>gi|89114028|gb|ABD61605.1| Dicer-1 [Drosophila melanogaster]
          Length = 2043

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 2/108 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   E+ +GY F +RS L +A+TH+S + +   + Y+RLEFLGD +L  LI+  L+    
Sbjct: 1936 FEKFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 1995

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM 111
                G L+   ++LV+    + +A       F R +S  L   +  F+
Sbjct: 1996 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFV 2043



 Score = 65.5 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 9/119 (7%)

Query: 11   KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
              +G+   + S++ +ALT S+ +     + ERLE +GD  L   I+T L+  +++  EG+
Sbjct: 1657 DLVGHPGPSPSIILQALTMSNANDGI--NLERLETIGDSFLKYAITTYLYITYENVHEGK 1714

Query: 71   LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----CSFMTSIQADVVESLIAA 125
            LS   +  V+     ++ R   L  ++  +     D     C ++     ++ ++LI A
Sbjct: 1715 LSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPK---ELEKALIEA 1770


>gi|226295027|gb|EEH50447.1| abhydrolase domain-containing protein [Paracoccidioides
           brasiliensis Pb18]
          Length = 723

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 56/226 (24%), Positives = 98/226 (43%), Gaps = 25/226 (11%)

Query: 19  NRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           ++SL     TH  ++            +++YERLE LGD  + +  + L+++ F   + G
Sbjct: 153 DKSLQTAIFTHEGVNDPTNTTTTTASTEKNYERLELLGDAYIEIFATRLVWDTFPRLRAG 212

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
            LS     LV  ET ++ A    L   ++V++++R+      T ++ D+ E+ +AA+ L 
Sbjct: 213 RLSQIREMLVKNETLAEYATRYGLDRRLQVAAEIRRQ-AKTWTKVRGDLFEAYVAAVILS 271

Query: 130 G---GIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG-- 182
               G+E+   ++ + W  R   ++  +     K EL +    K GV   Y V  R G  
Sbjct: 272 HPKRGVEMVEEWLTQLWIPRLEGVERERPVLRYKEELAKMVMDK-GVRVRY-VDEREGVQ 329

Query: 183 -PDHDPRFTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLKR 222
                  F V V + G     +    G   SK  A   AA + L+ 
Sbjct: 330 RKGGLQTFFVGVYLDGWGFRDVCLGTGTGMSKVIAGNEAARKALEN 375


>gi|218184775|gb|EEC67202.1| hypothetical protein OsI_34085 [Oryza sativa Indica Group]
          Length = 1093

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 44/185 (23%), Positives = 76/185 (41%), Gaps = 24/185 (12%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHF 63
               LE ++ Y F+ + LL +A+TH S+     +  Y+RLEFLGD +L LL++  L+   
Sbjct: 726 DIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQRLEFLGDSVLDLLLTRHLYATH 785

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-------------LRKDVCS- 109
                GEL+   ++LVS E  +Q     ++ S ++  S              L       
Sbjct: 786 TDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSGILLEQITEYVRSNLECQGKES 845

Query: 110 --------FMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTE 160
                    +  +  D++ES+  A++LD    V   + + +      +   K       E
Sbjct: 846 EFLQHTTCKVPKVLGDIMESIAGAVFLDTDFNVDMVWEIFEPLLSPLITPDKLALPPYRE 905

Query: 161 LQEWA 165
           L E  
Sbjct: 906 LLELC 910



 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 55/168 (32%), Gaps = 53/168 (31%)

Query: 41  ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-- 98
           ERLE LGD +L  ++   LF  +    EG+LS   +  V   T  +      L  ++R  
Sbjct: 551 ERLELLGDSVLKYVVGCDLFLRYPMKHEGQLSDMRSKAVCNATLHKHGIWRSLQGYVRDN 610

Query: 99  -------------------------------------------VSSDLRKDVCSFMTSIQ 115
                                                      V     +      +   
Sbjct: 611 AFDPRRWVAPGQISLRPFPCNCGIETAFVPSHRRYIRDDPSFVVGKPCDRGHRWMCSKTI 670

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQE 163
           +D VE+L+ A Y+ GGI  A  +V +++          + D K  LQE
Sbjct: 671 SDCVEALVGAYYVGGGI-AAALWVMRWFG------IDIKCDMK-LLQE 710


>gi|160285502|pdb|2EB1|A Chain A, Crystal Structure Of The C-Terminal Rnase Iii Domain Of
           Human Dicer
 gi|160285503|pdb|2EB1|B Chain B, Crystal Structure Of The C-Terminal Rnase Iii Domain Of
           Human Dicer
 gi|160285504|pdb|2EB1|C Chain C, Crystal Structure Of The C-Terminal Rnase Iii Domain Of
           Human Dicer
          Length = 200

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 71/166 (42%), Gaps = 33/166 (19%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 8   FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 67

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDV 107
               G L+   ++LV+    + +A + D   + +                 +  +  + +
Sbjct: 68  QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 127

Query: 108 CSF---------------MTSIQADVVESLIAALYLDGGIEVAGTF 138
            S                +     D+ ESL  A+Y+D G+ +   +
Sbjct: 128 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVW 173


>gi|313906469|ref|ZP_07839804.1| ribonuclease III [Eubacterium cellulosolvens 6]
 gi|313468696|gb|EFR64063.1| ribonuclease III [Eubacterium cellulosolvens 6]
          Length = 365

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 56/261 (21%), Positives = 94/261 (36%), Gaps = 47/261 (18%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDS 65
           + ++ +IGY F N  LL +A    S +     E+ E LEF+GD +L   +   L   + +
Sbjct: 9   TVVQNQIGYEFQNPLLLRQAFVRKSYTEENGGENNEVLEFIGDTVLSTAVMRYLTEKYGN 68

Query: 66  AK----------------------EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL 103
           A                       EGELS     L   +T ++   EL    F+ +    
Sbjct: 69  APSFKRPIWPNTPQKPMDFHCEKTEGELSRLKQKLTEKKTLARKIDELGFDKFLIMGKGD 128

Query: 104 RKDVCSFMTSIQADVVESLIAALYLDGGIEV--AGTFVDKYWKQRALKSGKFRRDAKTEL 161
                +   S++ D+ E+++ A+ LD   +     + V+      ++ +     D    +
Sbjct: 129 IGQNMTKQASVKEDLFEAILGAVALDSSFDYKKIQSVVEIMLHPDSIVNDGEEADYVQLI 188

Query: 162 QEWAHAKFGVTP--EYKVT--FRSGPDHDPRFTVVV----------------EI-SGLAP 200
            EW +A FG  P   Y+      S   ++P   V+V                 I   L  
Sbjct: 189 YEWDNA-FGAIPYFRYRQEPYGISLSPYNPEVIVIVPDQRSSFSELCYTCEMSIRKDLPR 247

Query: 201 AQGMDCSKRAAEQVAAAEVLK 221
            +    SK  A Q A     K
Sbjct: 248 FKAYGSSKAIARQNACEAAYK 268


>gi|170090528|ref|XP_001876486.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164647979|gb|EDR12222.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 356

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 57/282 (20%), Positives = 98/282 (34%), Gaps = 84/282 (29%)

Query: 24  EKALTHSSI-----------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           ++  TH S                    E+ E LGD ++GL +++L+F  +   + G  +
Sbjct: 77  QQVYTHRSFYARPTHIFEDHPDDPSPDNEKYEHLGDTVIGLSVTSLMFEMYPGLRVGPST 136

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                +V   T ++++    L   +R+    +       T+IQADV ES +  LYLD G+
Sbjct: 137 KIRAMIVGNFTLAEISLRYKLPDRLRL-HPAQSITLRASTNIQADVFESFVGGLYLDQGL 195

Query: 133 EVAGTFVDKYWKQRALKSGKFRR----------------------------------DAK 158
           E    +++  ++     + +  R                                  D  
Sbjct: 196 EAVKAWLNPLFRPFVTAAYRIVRQQHGLPPLATPPPSASASASPSSSSSPSPSPIHPDPS 255

Query: 159 T---------------ELQ------EWAHAKFGVTPEYKVTFRSG------PDH------ 185
           T               +LQ      EW ++  G      V   +G      P H      
Sbjct: 256 TTSIGATIGHLALFNQQLQKNNRQVEWVYSDGGEL---SVGGGNGYCDPGVPAHLLVRGT 312

Query: 186 --DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
              P + V V + G    +G   +K+AA   AA E L++ GI
Sbjct: 313 QTTPVWYVKVMVDGEFYGRGRGNTKKAARNEAAKEGLEKMGI 354


>gi|317133782|ref|YP_004089693.1| ribonuclease III [Ruminococcus albus 7]
 gi|315450244|gb|ADU23807.1| ribonuclease III [Ruminococcus albus 7]
          Length = 506

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 53/257 (20%), Positives = 91/257 (35%), Gaps = 47/257 (18%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNH- 62
            S L    GY F N +LL +A T  +    Y      E+ EFLG+ +L  +++  +    
Sbjct: 145 VSYLSSITGYKFQNENLLRQAFTRKAFKEEYHLTRCSEQFEFLGNAVLNAMVTKEIVKQS 204

Query: 63  --------------FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108
                              +G ++      V+ E  ++ A  L    FI      +K   
Sbjct: 205 ILNLPEYVDGVAWLNSERDKGYMTKLRTQYVNKEFLAERATTLGFDRFILYGKGEKKSQN 264

Query: 109 SFMTSIQADVVESLIAALYLDGGIE------VAGTFVDKYWKQRALKSGKFRRDAKTELQ 162
           S       D++E++I A+  D   +      V    ++        +      +      
Sbjct: 265 SR-----GDIIEAIIGAVAFDCNWDWSTLEKVVFNLINFCIPHLGHECYFDEMN------ 313

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE---------ISGLAPAQG-MDCSKRAAE 212
           +W    FG  PEYKV  ++ PD    F  V+          I  +    G    ++  A+
Sbjct: 314 KWHQKHFGKIPEYKVFQKNKPDDTECFECVIRFSLPENDKGIETIQEKVGKEGSTRSLAK 373

Query: 213 QVAAAEV---LKREGIW 226
           + AA +    LK  G+W
Sbjct: 374 ENAAKKAVDFLKEIGLW 390



 Score = 42.0 bits (98), Expect = 0.056,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 27/80 (33%), Gaps = 6/80 (7%)

Query: 137 TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
             +  +     +       DA  +LQE    K+   PEY+            +    + +
Sbjct: 385 KEIGLWLVLENINIEPRVEDAINQLQELYQKKYIDKPEYEFVRI-----AKVWACECKYN 439

Query: 197 GLAPAQGMDCSKRAAEQVAA 216
           G+        +K  A++ AA
Sbjct: 440 GIQNF-AYSKNKTDAKKKAA 458


>gi|167046039|gb|ABZ10551.1| dicer 2 [Nematostella vectensis]
          Length = 1162

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 75/183 (40%), Gaps = 42/183 (22%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISHSY---QESYERLEFLGDRILGLLISTLLFN 61
              + +E  +GY F +R +L +ALTH+S   +Y     SYE+LEFLGD +L  L++  +  
Sbjct: 934  ELALVEASLGYTFRDRDILLQALTHTSYPRAYSSVNSSYEQLEFLGDALLDYLVTRHVLQ 993

Query: 62   HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI----------------RVSSDLRK 105
             F     G ++   +++V+  + + +  + D    +                R+S    K
Sbjct: 994  RFPRLSPGAITDLRSAVVNNYSLACLTIQRDFHKHMRSMSMALFKVVRRFVRRLSEIEEK 1053

Query: 106  D-------------------VCS--FMTSIQADVVESLIAALYLDGGI--EVAGTFVDKY 142
            +                         +  +  D+ E+L+ ALY+D G   E+A + +   
Sbjct: 1054 ETRPDQVYSKLLLTTVEDGRGGEAIEVPKVLGDLFEALLGALYVDCGRDEELAWSVIYPL 1113

Query: 143  WKQ 145
               
Sbjct: 1114 LTP 1116



 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 2/83 (2%)

Query: 21  SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
           +L+ +ALT +S +      +ERLE  GD  +   IS LL++ F +  EG LS      VS
Sbjct: 582 TLILRALTTTSANDII--DHERLEIYGDAFIKYAISELLYSDFPNVNEGRLSFLRGLRVS 639

Query: 81  AETCSQVARELDLASFIRVSSDL 103
            +    + R   LA  I      
Sbjct: 640 NQQLFYLGRSRGLAPLILTKPFE 662


>gi|297610684|ref|NP_001064898.2| Os10g0485600 [Oryza sativa Japonica Group]
 gi|18087887|gb|AAL59041.1|AC087182_24 putative RNA helicase [Oryza sativa Japonica Group]
 gi|31432753|gb|AAP54346.1| Type III restriction enzyme, res subunit family protein, expressed
            [Oryza sativa Japonica Group]
 gi|255679506|dbj|BAF26812.2| Os10g0485600 [Oryza sativa Japonica Group]
          Length = 1458

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 76/185 (41%), Gaps = 24/185 (12%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHF 63
                LE ++ Y F+ + LL +A+TH S+     +  Y+RLEFLGD +L LL++  L+   
Sbjct: 1103 DIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQRLEFLGDSVLDLLLTRHLYATH 1162

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-------------LRKDVCS- 109
                 GEL+   ++LVS E  +Q     ++ S ++  S              L       
Sbjct: 1163 TDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSGILLEQITEYVRSNLECQGKES 1222

Query: 110  --------FMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTE 160
                     +  +  D++ES+  A+++D    V   + + +      +   K       E
Sbjct: 1223 EFLQHTTCKVPKVLGDIMESIAGAVFIDTDFNVDMVWEIFEPLLSPLITPDKLALPPYRE 1282

Query: 161  LQEWA 165
            L E  
Sbjct: 1283 LLELC 1287



 Score = 64.7 bits (157), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 55/168 (32%), Gaps = 53/168 (31%)

Query: 41   ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-- 98
            ERLE LGD +L  ++   LF  +    EG+LS   +  V   T  +      L  ++R  
Sbjct: 928  ERLELLGDSVLKYVVGCDLFLRYPMKHEGQLSDMRSKAVCNATLHKHGIWRSLQGYVRDN 987

Query: 99   -------------------------------------------VSSDLRKDVCSFMTSIQ 115
                                                       V     +      +   
Sbjct: 988  AFDPRRWVAPGQISLRPFPCNCGIETAFVPSHRRYIRDDPSFFVGKPCDRGHRWMCSKTI 1047

Query: 116  ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQE 163
            +D VE+L+ A Y+ GGI  A  +V +++          + D K  LQE
Sbjct: 1048 SDCVEALVGAYYVGGGI-AAALWVMRWFG------IDIKCDMK-LLQE 1087


>gi|251764789|sp|Q7XD96|DCL3B_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 3b; AltName:
            Full=Dicer-like protein 3b; Short=OsDCL3b
          Length = 1637

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 76/185 (41%), Gaps = 24/185 (12%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHF 63
                LE ++ Y F+ + LL +A+TH S+     +  Y+RLEFLGD +L LL++  L+   
Sbjct: 1240 DIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQRLEFLGDSVLDLLLTRHLYATH 1299

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-------------LRKDVCS- 109
                 GEL+   ++LVS E  +Q     ++ S ++  S              L       
Sbjct: 1300 TDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSGILLEQITEYVRSNLECQGKES 1359

Query: 110  --------FMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTE 160
                     +  +  D++ES+  A+++D    V   + + +      +   K       E
Sbjct: 1360 EFLQHTTCKVPKVLGDIMESIAGAVFIDTDFNVDMVWEIFEPLLSPLITPDKLALPPYRE 1419

Query: 161  LQEWA 165
            L E  
Sbjct: 1420 LLELC 1424



 Score = 68.6 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 72/204 (35%), Gaps = 58/204 (28%)

Query: 7    STLEKRIGYAFANR--SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            S L + IGY   +   +L+ +A+T  ++      S ERLE LGD +L  ++   LF  + 
Sbjct: 1032 SQLRREIGYN-QHIPVTLILEAIT--TLRCCETFSLERLELLGDSVLKYVVGCDLFLRYP 1088

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-------------------------- 98
               EG+LS   +  V   T  +      L  ++R                          
Sbjct: 1089 MKHEGQLSDMRSKAVCNATLHKHGIWRSLQGYVRDNAFDPRRWVAPGQISLRPFPCNCGI 1148

Query: 99   -------------------VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
                               V     +      +   +D VE+L+ A Y+ GGI  A  +V
Sbjct: 1149 ETAFVPSHRRYIRDDPSFFVGKPCDRGHRWMCSKTISDCVEALVGAYYVGGGI-AAALWV 1207

Query: 140  DKYWKQRALKSGKFRRDAKTELQE 163
             +++          + D K  LQE
Sbjct: 1208 MRWFG------IDIKCDMK-LLQE 1224


>gi|222613035|gb|EEE51167.1| hypothetical protein OsJ_31945 [Oryza sativa Japonica Group]
          Length = 1570

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 76/185 (41%), Gaps = 24/185 (12%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHF 63
                LE ++ Y F+ + LL +A+TH S+     +  Y+RLEFLGD +L LL++  L+   
Sbjct: 1172 DIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQRLEFLGDSVLDLLLTRHLYATH 1231

Query: 64   DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-------------LRKDVCS- 109
                 GEL+   ++LVS E  +Q     ++ S ++  S              L       
Sbjct: 1232 TDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSGILLEQITEYVRSNLECQGKES 1291

Query: 110  --------FMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTE 160
                     +  +  D++ES+  A+++D    V   + + +      +   K       E
Sbjct: 1292 EFLQHTTCKVPKVLGDIMESIAGAVFIDTDFNVDMVWEIFEPLLSPLITPDKLALPPYRE 1351

Query: 161  LQEWA 165
            L E  
Sbjct: 1352 LLELC 1356



 Score = 68.6 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 72/204 (35%), Gaps = 58/204 (28%)

Query: 7    STLEKRIGYAFANR--SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            S L + IGY   +   +L+ +A+T  ++      S ERLE LGD +L  ++   LF  + 
Sbjct: 964  SQLRREIGYN-QHIPVTLILEAIT--TLRCCETFSLERLELLGDSVLKYVVGCDLFLRYP 1020

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-------------------------- 98
               EG+LS   +  V   T  +      L  ++R                          
Sbjct: 1021 MKHEGQLSDMRSKAVCNATLHKHGIWRSLQGYVRDNAFDPRRWVAPGQISLRPFPCNCGI 1080

Query: 99   -------------------VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
                               V     +      +   +D VE+L+ A Y+ GGI  A  +V
Sbjct: 1081 ETAFVPSHRRYIRDDPSFFVGKPCDRGHRWMCSKTISDCVEALVGAYYVGGGI-AAALWV 1139

Query: 140  DKYWKQRALKSGKFRRDAKTELQE 163
             +++          + D K  LQE
Sbjct: 1140 MRWFG------IDIKCDMK-LLQE 1156


>gi|299473645|emb|CBN78039.1| RNAseIII [Ectocarpus siliculosus]
          Length = 523

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 46/167 (27%), Positives = 71/167 (42%), Gaps = 26/167 (15%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFN--H 62
            +E  +GY F +R LL  ALTH S  +        ++ LE+LGD +L L +S+ LF    
Sbjct: 16  AVEHALGYCFGDRRLLLTALTHRSFCNETHTASGDFDELEWLGDSVLQLAVSSWLFRSAK 75

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
                 G+LS      V +  C   AR+L+L  ++R+            T I AD  E++
Sbjct: 76  GSRRSSGQLSATRQRFVDSHACESFARQLNLLPYLRIGHGQPVGG----TKILADCFEAV 131

Query: 123 IAALYLDGG----IEVAGTFVDKYWKQRALKSGKFRRDAK--TELQE 163
           + A+Y+D G    +E     + +                K    LQE
Sbjct: 132 LGAVYVDAGGCSDLEPIHAILARVIPS-----------YKHGRRLQE 167


>gi|316961980|gb|EFV48479.1| endoribonuclease Dicer [Trichinella spiralis]
          Length = 325

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 61/251 (24%), Positives = 91/251 (36%), Gaps = 50/251 (19%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISH---SYQESYERLEFLGDRILGLLISTL 58
           +A   ++ E +IGY F N++ L +ALTHS  +       +SYERLEFLGD IL  LIS  
Sbjct: 59  TAYDLNSFEAKIGYRFTNKAYLIQALTHSLYNEVETPVTDSYERLEFLGDAILDYLISRH 118

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLAS-FIRVSSDLRKDVCSFM------ 111
           L++       G LS    +LV+       A  L +   F+     L++ V          
Sbjct: 119 LYSSKRIRSPGLLSDLRAALVNNYFLYFNAELLSVNERFVLAMRGLKESVNFHNELYMME 178

Query: 112 -------------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
                                   D+ ES+  A++LD    +A  +   Y+   A + GK
Sbjct: 179 EEQDDDEKETSEFAEHVEVPKPLGDIFESVAGAIFLDSHCSLATVW-QVYYNMIAEEIGK 237

Query: 153 FRRDAKT--------------ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
            R D  +               L E    +        +    G        V V ++G 
Sbjct: 238 QRSDFTSFNKCLCHPPISPVRHLLELEPERVQFNI---LDREEGNSG---VHVQVVVTGK 291

Query: 199 APAQGMDCSKR 209
               G   S R
Sbjct: 292 GSFIGSGKSYR 302


>gi|46117132|ref|XP_384584.1| hypothetical protein FG04408.1 [Gibberella zeae PH-1]
          Length = 1451

 Score =  121 bits (304), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 59/272 (21%), Positives = 95/272 (34%), Gaps = 69/272 (25%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            LE+ IGY F  +SLL +A+TH S +    Q SYE+LEFLGD +L  ++ T +F       
Sbjct: 1157 LEELIGYTFQKKSLLIEAMTHGSYAADGQQRSYEQLEFLGDAVLDYIVVTRMFQSDPPVP 1216

Query: 68   EGELSVRFNSLVSAETCSQVARELDL----------------------ASFIRVSSDLRK 105
             G L +   ++ +A+  +    +  L                        F+R SS    
Sbjct: 1217 NGRLHMVKTAMANADFLAFTNMQHGLRRPEVEINENGEPVPTEVSLPIWKFMRHSSPEMG 1276

Query: 106  DVCS-------------------------------FMTSIQADVVESLIAALYLDGG-IE 133
             + +                                     +D+ E+ + A+++D G IE
Sbjct: 1277 RIMNETQARFESLQEEINEARTNGKHYPWTLLARLHPKKFYSDIFEATLGAIWVDSGDIE 1336

Query: 134  VAGTFVDKY----WKQRALKSGKFRRDAKTELQEWA--HAKFGVTPEYKVTFRSGPDHDP 187
            V   F+ K+    +  R L      +  K EL + A           Y  T   GP    
Sbjct: 1337 VCTAFLHKFGVLPYLDRILSDNIHVQHPKEELAKLAIDQKM-----TYDYTAVDGP--IK 1389

Query: 188  RFTVVVEISGLAPAQGMDC-SKRAAEQVAAAE 218
             +    ++            +K  A   AA E
Sbjct: 1390 EYLCTAKVGDRVVGVVSGALNKAEAMTKAAEE 1421



 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 61/147 (41%), Gaps = 20/147 (13%)

Query: 18   ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
             +  L+ +A++  S +      YER+EFLGD +L        ++      EG L+   + 
Sbjct: 983  TDLQLVIEAISSRSAAEPV--DYERIEFLGDSVLKYCTVIQAYSEHPFWPEGLLNHFKDR 1040

Query: 78   LVSAETCSQVARELDLASFIR-----------VSSDLRKDV------CSFM-TSIQADVV 119
            LVS    +++  E  L+ FI            +  D   D         F+     ADVV
Sbjct: 1041 LVSNTRLTRMCLETGLSKFIFSKTFTGIKWRPLYRDEFLDKKPVDGVSRFVGPKTLADVV 1100

Query: 120  ESLIAALYLDGGIEVAGTFVDKYWKQR 146
            E+L+ A Y DGGI  A   +  +   +
Sbjct: 1101 EALVGASYQDGGISKALECIKVFLGTK 1127


>gi|317148472|ref|XP_001822794.2| RNase3 domain protein [Aspergillus oryzae RIB40]
          Length = 354

 Score =  121 bits (304), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 54/219 (24%), Positives = 87/219 (39%), Gaps = 25/219 (11%)

Query: 23  LEKA-LTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
           LE+A  TH  +S+  +++Y+RLE LGD  + L+ + L++  F     G +S     LV  
Sbjct: 125 LERAVFTHPGVSNDTEKTYDRLEILGDAYIELIATKLIWKRFREIPSGRISQIRELLVKN 184

Query: 82  ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG---GIEVAGTF 138
           ET ++ A    L     V  D  +    + T  +AD+ E+ +AA  +     G  V   +
Sbjct: 185 ETLAEYAAGYGLDRKAAVPQDYLRQSKRW-TKTRADIFEAYVAAAIISHPVDGYRVVENW 243

Query: 139 VDKYWKQRALKSG--KFRRDAKTELQEWAHAK---FGVTPEYKVTFRSGPDHD----PRF 189
           + + W  +  + G  K   +AK    E    K    G+   Y       P         F
Sbjct: 244 LTQLWLPKLSELGIQKPVLNAK----ELLARKIMGKGIKLRY--IDEHPPAQQGPGMQTF 297

Query: 190 TVVVEI-----SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            V V +     +      G   +K  A   AA + L  E
Sbjct: 298 FVGVYLTGWGWNNKHLGSGQGPNKTIAGNEAAHQALSNE 336


>gi|255953957|ref|XP_002567731.1| Pc21g06890 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589442|emb|CAP95586.1| Pc21g06890 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1495

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 71/183 (38%), Gaps = 32/183 (17%)

Query: 11   KRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            +++GY F    LL  A TH S   + +    Y+RLEFLGD +L ++    LF+ F +   
Sbjct: 1217 EKVGYDFKYPRLLRSAFTHPSYPLAWAKVPCYQRLEFLGDALLDMVCVEHLFHRFPNRDP 1276

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVSSD----------------LRKDVC---- 108
              L+    ++VS +    +A +L L   ++  S+                  +       
Sbjct: 1277 QWLTEHKMAMVSNKFLGALAVKLGLHLHLQHFSNPLMIQNSKYAEEIQLAESESNGEVDY 1336

Query: 109  ----SFMTSIQADVVESLIAALYLDGGIEVA------GTFVDKYWKQRALKSGKFRRDAK 158
                S       D++E+ + A+++D G +           +  ++   ++      R   
Sbjct: 1337 WLSTSDSPKCLPDMLEAYLGAIFVDSGFDFTVIEAFFQRHILPFFHDMSIYDTFANRHPT 1396

Query: 159  TEL 161
            T L
Sbjct: 1397 TFL 1399



 Score = 71.6 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 42/178 (23%), Positives = 65/178 (36%), Gaps = 39/178 (21%)

Query: 21   SLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
                +A T        H S    +     ++YERLE LGD +L +  S  LF       E
Sbjct: 1017 EYALEAFTKDSDNTEEHRSLQIHVQRGMGKNYERLELLGDSVLKMATSISLFAQNPDDDE 1076

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIR-------------VSSDLRKDVCSFMTS-- 113
             +  V    L+  +   + A EL L  +IR             +S +  +D   F+ S  
Sbjct: 1077 YDYHVNRMCLICNKNLFKNAIELKLYEYIRSRGFSRHMWYPPGLSLEYGRDHAKFIDSEG 1136

Query: 114  -------IQADVVESLIAALYLDGG----IEVAGTFVDKYWKQRALKSGKFRRDAKTE 160
                     ADV E+LI A  L GG     ++A   V  +   +   +    +D  + 
Sbjct: 1137 KHSLAEKTIADVCEALIGASLLSGGDDNRYDMAIKAVTIFVNSQN-HTATSWKDYISA 1193


>gi|297804712|ref|XP_002870240.1| ribonuclease III family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316076|gb|EFH46499.1| ribonuclease III family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 214

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 40/145 (27%), Positives = 60/145 (41%), Gaps = 17/145 (11%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           L   +LEK + Y F ++ LL +A T +S      +SYE LE LGD IL + I       +
Sbjct: 28  LEIESLEKILNYKFKDKRLLVQAFTDASYVDDKCDSYEILELLGDSILNMSIIDEFIKLY 87

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-----------------DLRKD 106
                G L+      V  E  ++VA +  L  ++R                     L  +
Sbjct: 88  PKESPGPLTKLRAVNVDTEKLARVAVKHQLYRYLRHKKPLLEEQILEFVEAMEKYPLHSN 147

Query: 107 VCSFMTSIQADVVESLIAALYLDGG 131
               +  + AD+VES I AL+ D  
Sbjct: 148 GLLKVPKVLADIVESTIGALFRDCN 172


>gi|119478976|ref|XP_001259517.1| RNase3 domain protein [Neosartorya fischeri NRRL 181]
 gi|158706438|sp|A1DE13|DCL1_NEOFI RecName: Full=Dicer-like protein 1; Includes: RecName:
            Full=Endoribonuclease dcl1; Includes: RecName:
            Full=ATP-dependent helicase dcl1
 gi|119407671|gb|EAW17620.1| RNase3 domain protein [Neosartorya fischeri NRRL 181]
          Length = 1538

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 98/249 (39%), Gaps = 37/249 (14%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFD 64
             +E+ +GY F    LL  A+TH S+  ++      Y+RLEFLGD +L ++    LF  F 
Sbjct: 1256 HVEEELGYHFTYPRLLASAITHPSLPSTWGYRVPCYQRLEFLGDSLLDMVCVEDLFRRFP 1315

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSI--------- 114
                  L+    ++VS +    ++ +L     I   S+ L+  +  ++  I         
Sbjct: 1316 DRDPQWLTEHKMAMVSNKFLGALSVKLGFHRRIMAFSNPLQAQITHYVEEIESAQAESRG 1375

Query: 115  --------------QADVVESLIAALYLDG--GIEVAGTF----VDKYWKQRALKSGKFR 154
                            D+VE+ + A+++D     +V   F    +  +++  ++      
Sbjct: 1376 AVDYWVVAKDPPKCLPDMVEAYLGAIFVDSKFDFQVIEVFFERQIKPFFEDMSIYDTFAN 1435

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGP--DHDPR-FTVVVEISGLAPAQGMDCSKRAA 211
            +   T L      ++G T  Y +     P  D  P      V + G   ++    S R A
Sbjct: 1436 KHPTTFLHNKLTNEYGCT-NYCLKAGELPTIDGAPAGVLAAVIVHGNVISEARSSSSRYA 1494

Query: 212  EQVAAAEVL 220
            +  A+ + L
Sbjct: 1495 KVKASEKAL 1503



 Score = 66.6 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 47/148 (31%), Gaps = 34/148 (22%)

Query: 20   RSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
                 +A T        H            ++YERLEFLGD  L +  S  L+       
Sbjct: 1058 PDFALEAFTKDSDNTEEHRGQQIHFQRGMGKNYERLEFLGDCFLKMATSIALYTQNPDDD 1117

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIR---------------------VSSDLRKD 106
            E +  V    L+  +     A +  +  +IR                      S  L  +
Sbjct: 1118 EFDYHVNRMCLICNKNLFNTAIKKQIYRYIRSRGFSRHIWYPDGLTLLHGKDHSKKLLSE 1177

Query: 107  VCS-FMTSIQADVVESLIAALYLDGGIE 133
                      ADV E+LI A  L GG E
Sbjct: 1178 GKHALGEKTIADVCEALIGASLLSGGPE 1205


>gi|255030397|ref|ZP_05302348.1| ribonuclease III [Listeria monocytogenes LO28]
          Length = 102

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 56/100 (56%), Gaps = 4/100 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLF 60
           ++  L++ +G+ F N  LL++A THSS  + ++    +  ERLEFLGD +L L +S  LF
Sbjct: 3   QWEELQESVGFDFKNVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLF 62

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
           N +    EG ++    ++V   +  + A  +  + ++R+ 
Sbjct: 63  NKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLG 102


>gi|297794785|ref|XP_002865277.1| hypothetical protein ARALYDRAFT_917014 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297311112|gb|EFH41536.1| hypothetical protein ARALYDRAFT_917014 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 786

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 54/277 (19%), Positives = 101/277 (36%), Gaps = 70/277 (25%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M ++   T+EK + Y+F N++LL++A+T           ++RLEFLGD +L + ++  + 
Sbjct: 1   MDSM--ETVEKILNYSFKNKTLLKEAIT-------LSPRFKRLEFLGDSVLEVALANYIH 51

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM--------- 111
           + + + K  EL     + V+ E  ++   + +L  FI      +    S           
Sbjct: 52  HAYPNLKLQELCDLRTANVNNEKFARATVKHNLYQFII---GEKSSSPSEKIKEFSEAVS 108

Query: 112 --------------TSIQADVVESLIAALYLDGGIEVAGTF----VDKYWKQRALKSGKF 153
                           +  D+VES+  A+Y+D   +V   +    V  ++          
Sbjct: 109 KEDVPVPYGGLVEAPKVLGDIVESIAGAVYIDVDFDVQRFWEVCCVCLFFITFVFLISML 168

Query: 154 RRDAKTELQEWAHA-KFGVTPEYKVTF--------------------------RSGPDHD 186
               K E  E+    +  + P Y +                             S  DH 
Sbjct: 169 LI--KRE--EFLQIFRGLLEPIYTLDDLQMQPKPPFLTLFRLADKHGKRIDFRYSKDDHS 224

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                 V + G+  A G   S   A+ +AA E +++ 
Sbjct: 225 KENIAEVYLDGIFIASGCTKSLSVAKVLAAEEAVQKL 261



 Score = 98.6 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/258 (18%), Positives = 95/258 (36%), Gaps = 58/258 (22%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M +     +EK + Y F N++LL++AL  +S        +++L F+G   L L I+  ++
Sbjct: 467 MDSDSVKAVEKILNYVFTNKNLLKEALRQTS------SLFQKLRFVGRAALVLAITNHIY 520

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR---------------VSSDLR- 104
             + + +  EL +        +T ++VA + ++  F                 V  +   
Sbjct: 521 LRYPNFEPRELELLQRGNTCNKTLARVAVKHNIHQFFIGQFKSEKKIEAFSKVVGKEDDP 580

Query: 105 --KDVCSFMT-SIQADVVESLIAALYLDGGIEVAGTF---------------VDKYWKQR 146
              D  S  T ++ +D+VES+  A+Y+D   ++   +               +    +  
Sbjct: 581 VPSDGRSERTTNVLSDLVESVAGAVYIDMNFDIKRLWESFRGLFEPLYTLDDLRLRPQPI 640

Query: 147 ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206
              S    +D K                Y+     G     R+   V +     A G   
Sbjct: 641 HTLSCLGDKDGK-----------HFDFRYE---EKG---SNRYKAHVYLDDKLIASGKKK 683

Query: 207 SKR-AAEQVAAAEVLKRE 223
           + R  A+  AA E +++ 
Sbjct: 684 NSRDDAKMSAAMEAVRKL 701



 Score = 45.1 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 6/73 (8%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE-----ISGLAPAQGMDC-SKRA 210
            K +L +         P Y++    GP ++ +F   V+     I G    +G     K+ 
Sbjct: 365 PKGKLHKICVKNKWPFPIYRIEEERGPKNEQKFVCSVKIEIPNIEGSFHMKGDAKPKKKE 424

Query: 211 AEQVAAAEVLKRE 223
           AE  +A  +++  
Sbjct: 425 AENSSAYHMIRAL 437


>gi|294463153|gb|ADE77113.1| unknown [Picea sitchensis]
          Length = 173

 Score =  120 bits (303), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 41/144 (28%), Positives = 75/144 (52%), Gaps = 20/144 (13%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             S LE  + Y F ++SLL++A+THSS  ++  ESYE+LEF+GD +LG L++  L+  + 
Sbjct: 18  SLSELEDILKYKFKSKSLLKEAITHSS--NNNTESYEKLEFVGDSVLGYLVTKHLYCAYP 75

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS------------SDLRKDVCSFM- 111
              +G L++  +  V  E  ++V  +     ++ ++             D+  +  SF  
Sbjct: 76  KLYQGTLTLLRSRNVDTEKFARVCVKHKFHQYLLLNAPALQQIIEDFVKDIEDESKSFRC 135

Query: 112 -----TSIQADVVESLIAALYLDG 130
                  + AD+VES+  A+++D 
Sbjct: 136 GDFKPPKVLADIVESIAGAVFVDC 159


>gi|2244899|emb|CAB10321.1| UFD1 like protein [Arabidopsis thaliana]
 gi|7268289|emb|CAB78584.1| UFD1 like protein [Arabidopsis thaliana]
          Length = 778

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 49/195 (25%), Positives = 75/195 (38%), Gaps = 23/195 (11%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +   +LEK + Y F ++SLL KA T +S      ESYE LE LGD IL + I       +
Sbjct: 52  MEIESLEKILNYKFKDKSLLLKAFTDASYVDDKSESYELLELLGDSILNMGIIYDFIKLY 111

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-----------------DLRKD 106
                G L+      V  E  ++VA    L S++R                     L  +
Sbjct: 112 PKEAPGPLTKLRAVNVDTEKLARVAVNHQLYSYLRHKKPLLEEQILEFVEAMEKYPLHSN 171

Query: 107 VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH 166
               +  + AD+VES I A+++D         +  +      K     R AK +L E   
Sbjct: 172 GLLKVPKVLADIVESTIGAIFMDCNSTETVWKISNHQ-----KMDFELRSAKEKL-EREQ 225

Query: 167 AKFGVTPEYKVTFRS 181
            +     + K+    
Sbjct: 226 RERKQRAKLKLEREK 240


>gi|213408108|ref|XP_002174825.1| dicer [Schizosaccharomyces japonicus yFS275]
 gi|212002872|gb|EEB08532.1| dicer [Schizosaccharomyces japonicus yFS275]
          Length = 1384

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 51/270 (18%), Positives = 103/270 (38%), Gaps = 55/270 (20%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFD 64
            S LE  +GY F +  LL+ A TH+S   + Q   +Y++LEFLGD +L  ++   LF  + 
Sbjct: 1105 SGLESLVGYTFKHPGLLKIAFTHASYVKTTQTAVNYQQLEFLGDAVLDFIVVRYLFKKYQ 1164

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASF-IRVSSDLRKDVCSFM------------ 111
            +    EL+   +  V  ++ + V+ +L L  F ++ + D+R     +             
Sbjct: 1165 NKTAAELTDTKSFYVCNKSLAYVSFKLGLYDFMLQDNEDIRNAYKEYKSVIDKLQQDTKI 1224

Query: 112  -----------------TSIQADVVESLIAALYLDGGIE--VAGTFVDKYWKQRALKSGK 152
                                 +D+ ES + A+YLD G +      F+    ++     G 
Sbjct: 1225 DSNHPTPSEKFWLLIEPPKFLSDIFESFVCAVYLDSGFQFSALEPFLKFLVEELGDYEGV 1284

Query: 153  FRRDAK-TELQEWAHAKFGVTPEYK-----VTFRSGPD--------HDPRFTVVVEISGL 198
            F      +++ +    +     +YK     +      D        H   +   + I   
Sbjct: 1285 FNEPPVFSQINQHLQKQGCK--QYKFQCVIIDEEEKSDLLYTKAVTH--HYEYSLIIHDE 1340

Query: 199  APAQGMDCSKRAAEQ---VAAAEVLKREGI 225
                    +K+ +++   +A  E+ ++  +
Sbjct: 1341 IVCSAKALNKKNSQKLLSLALKELYQKASV 1370



 Score = 48.5 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 57/146 (39%), Gaps = 25/146 (17%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             L+ +I    + +SLL +A T  S        Y+R EF GD  L L  S  +F  +    
Sbjct: 925  RLQAKI----STKSLL-EAST--SPGSVLPFDYDRYEFYGDTFLKLAASNSVFLSYLWVP 977

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIR------------------VSSDLRKDVCS 109
            E +L +    ++   T   ++++ DL  F+                    S +  +    
Sbjct: 978  ECKLHIERKRIIRNSTLFTISKKHDLPGFLLSEPFVIKTFIPFGYQPTQKSKNKMERSQL 1037

Query: 110  FMTSIQADVVESLIAALYLDGGIEVA 135
                  AD+VES + A   D G++ A
Sbjct: 1038 LANKTVADIVESSLGACLYDSGVDEA 1063


>gi|195335297|ref|XP_002034311.1| GM19969 [Drosophila sechellia]
 gi|194126281|gb|EDW48324.1| GM19969 [Drosophila sechellia]
          Length = 1731

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 65/293 (22%), Positives = 104/293 (35%), Gaps = 78/293 (26%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +S LE  +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1443 INHSHLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1502

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI-----RVSSDLRK------DVCSFM 111
                  G L+   ++LV+  T + +     L  FI     ++S  + K           +
Sbjct: 1503 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENEKLSETISKFVNFQESQGHRV 1562

Query: 112  TS---IQADVVESLIAALYLDGGIEV--AGTFVDKYWKQRALKSGKFRRD-----AKT-- 159
            T+   I  +  + L   L LD  +E+  A   + +  +Q     G+F         KT  
Sbjct: 1563 TNYVHILLEEADVLPTPLDLDDELELPHANECISQEAEQGVPPKGEFNMSTNVDVPKTLG 1622

Query: 160  ------------------------------ELQEWAHAKFGVTPEYKVTFRSGPDHDP-- 187
                                          ELQE+      + P  ++       H    
Sbjct: 1623 DVLEALIAAIYLDCRDLRRTWDVIFRLFEPELQEFT-RNVPINPIRQLIEHK---HAKPV 1678

Query: 188  ---------------RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
                           +FT    +       G   +K  A+  AA   L+R  I
Sbjct: 1679 FSSPIMDGDTLMVGCQFTC---MEKSIKVYGFGSNKNQAKLSAAKHALQRLSI 1728



 Score = 53.2 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 26   ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85
            A+T SS +  +    ERLE LGD  L L  +  L + +    EG L+   + LVS     
Sbjct: 1209 AITASSATDVF--DMERLEILGDSFLKLSATLYLASKYSDWNEGTLTQVKSKLVSNRNLL 1266

Query: 86   QVARELDLASFI 97
                + D+   +
Sbjct: 1267 YCLADTDIPKKL 1278


>gi|238503379|ref|XP_002382923.1| nucleolar RNAse III, putative [Aspergillus flavus NRRL3357]
 gi|83771529|dbj|BAE61661.1| unnamed protein product [Aspergillus oryzae]
 gi|220691733|gb|EED48081.1| nucleolar RNAse III, putative [Aspergillus flavus NRRL3357]
          Length = 234

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 54/219 (24%), Positives = 87/219 (39%), Gaps = 25/219 (11%)

Query: 23  LEKA-LTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
           LE+A  TH  +S+  +++Y+RLE LGD  + L+ + L++  F     G +S     LV  
Sbjct: 5   LERAVFTHPGVSNDTEKTYDRLEILGDAYIELIATKLIWKRFREIPSGRISQIRELLVKN 64

Query: 82  ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG---GIEVAGTF 138
           ET ++ A    L     V  D  +    + T  +AD+ E+ +AA  +     G  V   +
Sbjct: 65  ETLAEYAAGYGLDRKAAVPQDYLRQSKRW-TKTRADIFEAYVAAAIISHPVDGYRVVENW 123

Query: 139 VDKYWKQRALKSG--KFRRDAKTELQEWAHAK---FGVTPEYKVTFRSGPDHD----PRF 189
           + + W  +  + G  K   +AK    E    K    G+   Y       P         F
Sbjct: 124 LTQLWLPKLSELGIQKPVLNAK----ELLARKIMGKGIKLRY--IDEHPPAQQGPGMQTF 177

Query: 190 TVVVEI-----SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            V V +     +      G   +K  A   AA + L  E
Sbjct: 178 FVGVYLTGWGWNNKHLGSGQGPNKTIAGNEAAHQALSNE 216


>gi|297815500|ref|XP_002875633.1| hypothetical protein ARALYDRAFT_484824 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297321471|gb|EFH51892.1| hypothetical protein ARALYDRAFT_484824 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1521

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 54/181 (29%), Positives = 90/181 (49%), Gaps = 22/181 (12%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
              + LE++I + F+ + LL++A+THSS+  SY  SYERLEFLGD +L  LI+  LFN ++
Sbjct: 1138 ELTELERKIQHEFSAKFLLKEAITHSSVHESY--SYERLEFLGDSVLDFLITRHLFNTYE 1195

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDV-------------CSF 110
                GE++   ++ V+ E  +QVA + +L   + R ++ L   +                
Sbjct: 1196 QTGPGEMTDLRSACVNNENFAQVAVKNNLHIHLQRCATVLENQINEYLMSFQKPDETGRS 1255

Query: 111  MTSI-----QADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTELQEW 164
            + SI       DVVES+  AL +D  +++   + V +      +   K +     EL E 
Sbjct: 1256 IPSIQGPKALGDVVESIAGALLIDTRLDLDQVWRVFEPLLSPLVTPDKLQLPPYRELNEL 1315

Query: 165  A 165
             
Sbjct: 1316 C 1316



 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 33/65 (50%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
            S ERLE LGD +L  + S  LF  +    EG+LS +  S++S     ++A    L  +IR
Sbjct: 961  SMERLELLGDSVLKYVASCYLFLKYPDKDEGQLSRQRQSIISNSNLHRLATNRKLQGYIR 1020

Query: 99   VSSDL 103
              +  
Sbjct: 1021 NGAFE 1025


>gi|158706455|sp|Q2H0G2|DCL1_CHAGB RecName: Full=Dicer-like protein 1; Includes: RecName:
            Full=Endoribonuclease DCL1; Includes: RecName:
            Full=ATP-dependent helicase DCL1
          Length = 1607

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 56/281 (19%), Positives = 97/281 (34%), Gaps = 67/281 (23%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +  E R+GYAF +  LL  A  H +    +    SY+RLEFLGD +L +     LF+ F 
Sbjct: 1273 ARFEARMGYAFTHPRLLRSAFQHPTYPSVYEKLPSYQRLEFLGDALLDMASVEFLFHRFP 1332

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDV---------------- 107
             A    L+    ++VS +    +A  L     I   +S ++K++                
Sbjct: 1333 GADPQWLTEHKMAMVSNQFLGCLAVYLGFHRAISYCASAIQKEITEYVTEIEDALQSARD 1392

Query: 108  -------------------------------CSFMTSIQADVVESLIAALYLDGGIEVAG 136
                                           CS       DVVE+ + A+++D   + A 
Sbjct: 1393 DASKTPCNRHATTPSPGDLPAESFARDFWVRCSRPPKCLPDVVEAYVGAVFVDSRYDFAR 1452

Query: 137  ------TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD------ 184
                    V  +++   L      +   T L      +     E+++  +  P       
Sbjct: 1453 VRAFFADHVRPFFEDMRLYDAFANKHPVTFLAGIMQGRMRCA-EWRLLVKDLPPVVGAGA 1511

Query: 185  ----HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
                  P+    V + GL  A  +  S R  +  AA + ++
Sbjct: 1512 GTELETPQVVCAVRVHGLTLAHAVAASGRYGKIAAAKKAIQ 1552



 Score = 72.0 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 47/139 (33%), Gaps = 30/139 (21%)

Query: 20   RSLLEKALT--------HS----SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
              L  +A T        H     S       +YERLEFLGD  L +  +  +F       
Sbjct: 1078 PDLALEAFTKDSDNSGEHDAEQISFQSGMGNNYERLEFLGDCFLKMATTISIFTLIPDKA 1137

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIR---------------VSSDLRKDVCSFM- 111
            E E  V    L+        A E+ L   IR               +    RKD+     
Sbjct: 1138 EFEYHVERMLLICNRNLFNNALEVKLEEHIRSMAFDRRSWYPEGLTLKKGKRKDLTRQHV 1197

Query: 112  --TSIQADVVESLIAALYL 128
                  ADV E+LI A YL
Sbjct: 1198 LADKTIADVCEALIGAAYL 1216


>gi|241858001|ref|XP_002416132.1| ribonuclease III, putative [Ixodes scapularis]
 gi|215510346|gb|EEC19799.1| ribonuclease III, putative [Ixodes scapularis]
          Length = 778

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 72/166 (43%), Gaps = 10/166 (6%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           +    E+  G  F +  LL KA TH S   ++    S +RLEFLGD +L L+ S  L+ +
Sbjct: 573 KLHEFEELTGIEFTHIRLLAKAFTHRSIGFNNLTLGSNQRLEFLGDTVLQLVASEYLYKY 632

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F    EG LS+  +SLV+  T + V  +L +  F               T  +AD++E  
Sbjct: 633 FPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMVEFTIY----PYPKGELKTKDRADILEGE 688

Query: 123 IAALYLDGGI---EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWA 165
              L L  G      +  ++  Y         +   D K++LQ+  
Sbjct: 689 DTPLSLGQGWMGTSHSCPYIL-YISSLDFILNQDWNDPKSKLQQCC 733



 Score = 68.6 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 60/153 (39%), Gaps = 28/153 (18%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
           T SSISH      ERLEFLGD ++  L S  LF  F   +EG L+    ++V  +  + +
Sbjct: 414 TASSISH-----NERLEFLGDAVVEFLSSIHLFFMFPDLEEGGLATYRAAIVQNQHLAVL 468

Query: 88  AR------------ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI--AALYLDGGIE 133
           A+            EL ++  I  S   R    +F   +  +     +   AL+LD GI 
Sbjct: 469 AKVILHSKVFTHVEELPISPHISFSLPARH---AFAIGMLEETSWLFVSLGALFLDSGIR 525

Query: 134 VAGTFVDKYWKQRALKSG---KFRRDAKTELQE 163
           VA               G    +       LQE
Sbjct: 526 VADQVFSTTLFSEPDLLGVWVNYPLHP---LQE 555


>gi|63054443|ref|NP_588215.2| dicer [Schizosaccharomyces pombe 972h-]
 gi|1351642|sp|Q09884|DCR1_SCHPO RecName: Full=Protein Dicer; AltName: Full=Cell cycle control protein
            dcr1; AltName: Full=RNA interference pathway protein
            dcr1; Includes: RecName: Full=Endoribonuclease dcr1;
            Includes: RecName: Full=ATP-dependent helicase dcr1
 gi|157310516|emb|CAB41233.2| dicer [Schizosaccharomyces pombe]
          Length = 1374

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 26/163 (15%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFD 64
            S +E+ IGY+F N+ LL  A  H S+       E+Y++LEFLGD +L  +I   L+  + 
Sbjct: 1084 SYIEETIGYSFKNKKLLHLAFIHPSMMSQQGIYENYQQLEFLGDAVLDYIIVQYLYKKYP 1143

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS--------------- 109
            +A  GEL+   +  V  ++ S +   L+L  +I+  S    D                  
Sbjct: 1144 NATSGELTDYKSFYVCNKSLSYIGFVLNLHKYIQHESAAMCDAIFEYQELIEAFRETASE 1203

Query: 110  --------FMTSIQADVVESLIAALYLDGGIEV-AGTFVDKYW 143
                          +D +E++I A++LD G  + +  FV   +
Sbjct: 1204 NPWFWFEIDSPKFISDTLEAMICAIFLDSGFSLQSLQFVLPLF 1246



 Score = 65.9 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 52/136 (38%), Gaps = 20/136 (14%)

Query: 25   KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
            +ALT  S        Y+RLEF GD  L L  S  +F  F   +E +L      ++S    
Sbjct: 916  QALT--SAESQLNFDYDRLEFYGDCFLKLGASITVFLKFPDTQEYQLHFNRKKIISNCNL 973

Query: 85   SQVARELDLASFIRVSSDLRK------------DVCSF------MTSIQADVVESLIAAL 126
             +VA + +L  +   +    +            D C +           AD+VE+ I A 
Sbjct: 974  YKVAIDCELPKYALSTPLEIRHWCPYGFQKSTSDKCRYAVLQKLSVKRIADMVEASIGAC 1033

Query: 127  YLDGGIEVAGTFVDKY 142
             LD G++ A       
Sbjct: 1034 LLDSGLDSALKICKSL 1049


>gi|322702026|gb|EFY93774.1| Dicer-like protein 1 [Metarhizium acridum CQMa 102]
          Length = 1524

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 69/194 (35%), Gaps = 36/194 (18%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDSA 66
             +E  IGY F +  LL  A  H S  +  +  +Y+RLEFLGD +L + I   LF  +  A
Sbjct: 1247 KVEGSIGYKFRSPKLLRSAFKHPSYPYEPELPNYQRLEFLGDALLDVAIVDFLFRRYPLA 1306

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV------------------- 107
                L+    ++ S    S +  EL L   I +S+                         
Sbjct: 1307 DPQWLTEHKMAMASNHFFSFLCVELGLHRHI-LSTGSSMMGHIAGFVEQIEKAKLQTEDG 1365

Query: 108  ---------CSFMTSIQADVVESLIAALYLDGGIEVA------GTFVDKYWKQRALKSGK 152
                             +D++E+++ A+Y D   +          F+  +++   L    
Sbjct: 1366 VLQLDFWLNTEHPPKALSDILEAVVGAMYEDSKYDYNSVRDFFTKFIAPHFQDMTLYDTY 1425

Query: 153  FRRDAKTELQEWAH 166
                  T+L +   
Sbjct: 1426 AAGHPVTQLTKLMQ 1439



 Score = 70.5 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 60/162 (37%), Gaps = 27/162 (16%)

Query: 20   RSLLEKALTHSS---ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
              L  +ALT  S   +     ++YERLEFLGD  L +  +  LF    +  E E  V   
Sbjct: 1065 PPLALEALT-KSEEDVDVQSNKNYERLEFLGDAFLKMATTISLFTLIPNKNEFEYHVERM 1123

Query: 77   SLVSAETCSQVARELDLASFIRVSSDLRKDVC-------------------SFMTSIQAD 117
             L+  +     A +  L  ++R S    +                             AD
Sbjct: 1124 ILICNKNLFNHAVDRGLQEYVR-SRGFDRRSWYPDLVLRKGKKHKPVALTHRLADKSIAD 1182

Query: 118  VVESLIAALYLD--GGIEVAGTFVDKYWKQRALKSGKFRRDA 157
            V E+LI A Y+    G+ +A   V K  + R  +  K+  D 
Sbjct: 1183 VCEALIGAAYMTEPEGMNLAVKAVTKMVQSRNHRMTKYS-DY 1223


>gi|291000766|ref|XP_002682950.1| hypothetical protein NAEGRDRAFT_62031 [Naegleria gruberi]
 gi|284096578|gb|EFC50206.1| hypothetical protein NAEGRDRAFT_62031 [Naegleria gruberi]
          Length = 1386

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 55/268 (20%), Positives = 104/268 (38%), Gaps = 53/268 (19%)

Query: 3    ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
             +    L +++ + F N  LL +A  H S +  +  +YERLEFLGD +LGL++++ +F  
Sbjct: 1103 KIDLYKLTEKLNFQFENSGLLLEAFIHPSYNGVF--NYERLEFLGDSVLGLIVTSKIFEK 1160

Query: 63   FDS---AKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFMT-----S 113
            F        G +S     +V  +  + +  E  L ++I    + + + V           
Sbjct: 1161 FHKNSSFSLGMMSKLREKIVMNKNFANLCIENQLQNYIIFSGNHIAQQVVHSKDDGEYVK 1220

Query: 114  IQADVVESLIAALYLDGGIE------VAGTFVDKYWKQRALKSGKFR------------- 154
            + +DV ESL  AL++D   +      +   F+ K +        +               
Sbjct: 1221 MLSDVFESLAGALFVDSHYDLDTVKLIYDEFLWKNFMDEIFTEAENEVSMNSNVTEIVGN 1280

Query: 155  --------------RDAKTELQEWAHA----KFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
                          RD+ + L E        +   + ++ +     P  +P F +V + S
Sbjct: 1281 PNNPIVTFISTNITRDSSSVLNELLQQFVFNRLDKSEKWYMEESKKP--NPPFNMVADFS 1338

Query: 197  G---LAPAQGMDCSKRAAEQVAAAEVLK 221
                     G   S + A++ A+AE L+
Sbjct: 1339 ITIFEKTFTGRGPSIKLAKKQASAECLQ 1366



 Score = 79.7 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/138 (30%), Positives = 61/138 (44%), Gaps = 21/138 (15%)

Query: 21   SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
             LLE+ALT          +YE+LEF GD IL  ++S  +++ F     G LS   +  VS
Sbjct: 934  ELLEEALTAK--RSQVGANYEKLEFFGDSILKYIVSKHIYHEFPLYSSGSLSQLQHKFVS 991

Query: 81   AETCSQVARELDLASFIRV----SSDLRKDVCSFMT-------------SIQADVVESLI 123
                + VAR   L  FI      +S L +++  F +              + ADVVES+I
Sbjct: 992  NYFLASVARNTRLPLFIITEPLNTSQLVQNIGGFKSNKFADETNIEAEYKVLADVVESII 1051

Query: 124  AALYLD--GGIEVAGTFV 139
               Y    G +E    F+
Sbjct: 1052 GFCYHIFGGSLEQINRFL 1069


>gi|302896162|ref|XP_003046961.1| hypothetical protein NECHADRAFT_95309 [Nectria haematococca mpVI
            77-13-4]
 gi|256727889|gb|EEU41248.1| hypothetical protein NECHADRAFT_95309 [Nectria haematococca mpVI
            77-13-4]
          Length = 1452

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 56/259 (21%), Positives = 97/259 (37%), Gaps = 55/259 (21%)

Query: 13   IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            +GY F   +LL  A  H S  +    +Y+RLEFLGD +L + I   LF  F  A    L+
Sbjct: 1161 VGYRFKWPALLRSAFKHPSWPYDPVPNYQRLEFLGDALLDMAIVDNLFQRFPQADPQWLT 1220

Query: 73   VRFNSLVSAETCSQVARELDLASFI------RVS-------------SDLRKDVCSFMTS 113
                ++ S +    +  +LDL   +       +               D R++  +  T+
Sbjct: 1221 EHKMAMASNQFLGCLCVKLDLHKHLTSTTSSLIGQISSYASELELAEEDARQEAKANKTA 1280

Query: 114  IQ--------------ADVVESLIAALYLDGGIEVA------GTFVDKYWKQRALKSGKF 153
            ++              ADV+E+L+ A+++D   +          F++ Y++  AL     
Sbjct: 1281 MRKDFWLRASAPPKAFADVMEALVGAMFVDAKYDYTVVRNFFTRFIEPYFEDMALYDSFA 1340

Query: 154  RRDAKTELQEWAHAKFGVTPEYKVTFRSGP-----------DHDPRFTVVVE-ISGLAPA 201
             +   T L +      G T  ++V+  + P           + D    V V  +     A
Sbjct: 1341 NKHPVTYLSKKMQQDLGCT-NWRVSAENVPCGVEEGIAALTESD---VVAVFMVHQKVVA 1396

Query: 202  QGMDCSKRAAEQVAAAEVL 220
                 S R A+   A   L
Sbjct: 1397 NATAKSGRYAKIAVAKRAL 1415



 Score = 69.3 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 53/147 (36%), Gaps = 21/147 (14%)

Query: 31   SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90
            +       +YERLEFLGD  L +  +  LF     + E    V    L+  +     A +
Sbjct: 987  NFQPGMGSNYERLEFLGDSFLKMATTISLFTLIPESDECGYHVERMILICNQNLFNHAVD 1046

Query: 91   LDLASFIR--------------VSSDLR-KDVCSFM--TSIQADVVESLIAALYLD---G 130
              L  +IR              +      K            ADV E+LI A YL    G
Sbjct: 1047 RKLHEYIRSKAFDRRSWYPDLPLKKGKAPKTEMRHNLADKSIADVCEALIGAAYLSGKGG 1106

Query: 131  GIEVAGTFVDKYWKQRALKSGKFRRDA 157
             +++A   V +  K +  K  KF  D 
Sbjct: 1107 SMDLAVKAVTRMVKSKNHKMEKFE-DY 1132


>gi|289620343|emb|CBI53201.1| unnamed protein product [Sordaria macrospora]
          Length = 345

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 92/240 (38%), Gaps = 41/240 (17%)

Query: 19  NRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
           + +L + ALTH   +++    SYERLE++GD  L L+ S+ ++  F +   G+ + R   
Sbjct: 68  DPALKKAALTHPGKANNDPVASYERLEWIGDAYLELIASSFIYQTFPTLPAGKSAQRREM 127

Query: 78  LVSAETCSQVARELDLASFIRVSSDLRKDVCS---------FMTSIQADVVESLIAALYL 128
           L+   T  + +    L +   +  +                    I  D+ E+ +  + L
Sbjct: 128 LIRNTTLGEFSVYYGLDNMADI-PEEFNMEGRVGGTNASQKVRVKILGDLFEAYVGGVIL 186

Query: 129 ---DGGIEVAGTFVDKYWKQ---RALKSGKFR------RDAKTELQEWAHAKFGVTPEYK 176
                GI+    ++   W       ++  + +       D KT L E A    GV  EYK
Sbjct: 187 SDPANGIQRVSDWLKALWGPLMAEYIREEEKKSKSGQAHDPKTIL-EAAIGARGVKIEYK 245

Query: 177 VTFRSGPDHD--------PRFTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLKRE 223
                 P  +        P F +   ++G     L    G   SK+ A Q AA   L+ +
Sbjct: 246 DL----PSKNLKDRGTKLPLFAIGCFMTGWGETNLQLGFGSALSKKEAGQKAAQMALENK 301


>gi|52548547|gb|AAU82396.1| ribonuclease III [uncultured archaeon GZfos17C7]
          Length = 248

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 59/244 (24%), Positives = 99/244 (40%), Gaps = 37/244 (15%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFN--HF 63
            LEK IG+ F N +LLE+A+T  S S+ + +   Y+RLEFLGDR+L L+++  LF     
Sbjct: 2   ELEKLIGHKFKNIALLEEAITTGSYSNEHPDSSDYQRLEFLGDRVLSLILAEELFKLSKS 61

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            S  EG+++     L +    ++    + L ++IR +             + ADV E++ 
Sbjct: 62  ASLDEGKMTFLKAELENNLRLAEYGENMGLRNYIRANEKRED----IRPKVIADVFEAIC 117

Query: 124 AALYLD----GGIEVAGTFVDKYWKQRALKSG--------KFRRDAKTELQEWAHAKFGV 171
            A+Y D      I+    F+ K+     +K            R   + + +E       +
Sbjct: 118 GAVYQDTKESSRIKEVKKFLLKFDILERIKDEMSSGRGFLPIRNQFENKFREIHRCNPEI 177

Query: 172 TPEYKVTFRSGPDHDPRFTVV-VEISGLAPAQGM----------DC---SKRAAEQVAAA 217
              Y     SG  H  ++ +    I  +    G                SK+ AE  A  
Sbjct: 178 NFVYT---SSGEGHQTKWKIEKCSIKDILSQTGEYVELKGIKNSGKWFSSKKDAETDAFE 234

Query: 218 EVLK 221
           +  K
Sbjct: 235 QAYK 238


>gi|328947077|ref|YP_004364414.1| ribonuclease III [Treponema succinifaciens DSM 2489]
 gi|328447401|gb|AEB13117.1| ribonuclease III [Treponema succinifaciens DSM 2489]
          Length = 369

 Score =  117 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 75/188 (39%), Gaps = 16/188 (8%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTL 58
           M+      ++  I Y F N  LLE+A T  S S  + E  + E LEF GD IL   ++ +
Sbjct: 1   MNRQDIGFVQSSINYQFKNLQLLEQAFTRKSYSEEHPELQNNEVLEFYGDEILDFFVTKM 60

Query: 59  LFNHFD---------SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS 109
           ++  F             EGEL+   + LVS E+ ++    +  + F+ +     K+   
Sbjct: 61  MYKRFSRILNNELVSEKNEGELTKLKSILVSKESLARCMYNIGFSKFLYLGKSDEKNEVY 120

Query: 110 FMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTELQEWAHAK 168
              S+  D+ E++I A+  D          V +        +G      K    E +H  
Sbjct: 121 KSKSVNEDLFEAIIGAVAADCDWNYEKLEKVCRTMLDMETTNGYLALLVK----EKSHRL 176

Query: 169 FGVTPEYK 176
               P Y+
Sbjct: 177 GFGEPCYR 184



 Score = 37.7 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 3/84 (3%)

Query: 141 KYWKQRALKSGKFRRDAK---TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197
            +  Q  +K      D     + L E    K  +   Y+       + +P +     + G
Sbjct: 254 HFLIQEEIKQQFQNLDYTNPASTLHELFQKKVIMEVRYEFNEYHDENGNPIWNCKAILEG 313

Query: 198 LAPAQGMDCSKRAAEQVAAAEVLK 221
               +  + SK+  +Q A+ ++LK
Sbjct: 314 YGTFEADNASKKQVKQDASLKLLK 337


>gi|221125080|ref|XP_002155102.1| PREDICTED: similar to dicer 1 [Hydra magnipapillata]
          Length = 798

 Score =  117 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 69/167 (41%), Gaps = 33/167 (19%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHF 63
                E  I Y F+N+S L +A TH S  S+S    Y++ EFLGD IL  LI+  + ++ 
Sbjct: 600 NLHKFEDLISYKFSNKSHLIQAFTHLSYLSNSVTGCYQQYEFLGDAILDFLITLHIQSNT 659

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL-------------------- 103
            +   G+L+   +++V+  T   +A +     +I  SS+                     
Sbjct: 660 QNLSPGQLTYFRSAVVNNNTFGLLAIKHSFYKYIYSSSNELFSSYNSFIEIVKDDQGLKD 719

Query: 104 ------------RKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138
                         +       +  D+ ES+  A++LD G+++   +
Sbjct: 720 EYFESPFVICPTESEEGYQAPKVLGDLFESVAGAIFLDSGLDLVTVW 766



 Score = 62.0 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 44/183 (24%), Positives = 68/183 (37%), Gaps = 36/183 (19%)

Query: 2   SALRYSTLEKRIGYAFAN---RSLLE--KALTHSSISHSYQESYERLEFLGDRILGLLIS 56
           S L    L +   Y   N    S+L+  +ALT    +  +    ERLE LGD  L   +S
Sbjct: 381 SVLDLENLLQLKNYVTENVKSPSVLKIFEALTTRQANMPF--DLERLEILGDSFLKQAVS 438

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM----- 111
             +F    S  EG+L++R  + +S E   +V + + + + I  S    K   S       
Sbjct: 439 IFVFFQNPSFHEGKLTIRRKNCISNENLCKVGKSVGIQNIICNSQFGIKSSNSENRNPWT 498

Query: 112 ------------------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA 147
                                       AD VE+LI   +  GG+ +A  F+  +     
Sbjct: 499 VWLPPGYLRAELDDIKRYTYQNVQPKSIADCVEALIGVYFEVGGVNLALCFMQHFLNIPV 558

Query: 148 LKS 150
           L S
Sbjct: 559 LHS 561


>gi|80979089|gb|ABB54747.1| Dicer-2 [Drosophila melanogaster]
          Length = 1715

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/96 (36%), Positives = 52/96 (54%), Gaps = 1/96 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +S LEK +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1424 INHSYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1483

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
                  G L+   ++LV+  T + +     L  FI 
Sbjct: 1484 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1519



 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 26   ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85
            A+T SS +  +    ERLE LGD  L L  +  L + +    EG L+   + LVS     
Sbjct: 1190 AITASSAADVF--DMERLEILGDSFLKLSATLYLASKYSDWNEGTLTEVKSKLVSNRNLL 1247

Query: 86   QVARELDLASFI 97
                + D+   +
Sbjct: 1248 FCLIDADIPKTL 1259


>gi|80979099|gb|ABB54752.1| Dicer-2 [Drosophila melanogaster]
          Length = 1715

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/96 (36%), Positives = 52/96 (54%), Gaps = 1/96 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +S LEK +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1424 INHSYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1483

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
                  G L+   ++LV+  T + +     L  FI 
Sbjct: 1484 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1519



 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 26   ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85
            A+T SS +  +    ERLE LGD  L L  +  L + +    EG L+   + LVS     
Sbjct: 1190 AITASSAADVF--DMERLEILGDSFLKLSATLYLASKYSDWNEGTLTEVKSKLVSNRNLL 1247

Query: 86   QVARELDLASFI 97
                + D+   +
Sbjct: 1248 FCLIDADIPKTL 1259


>gi|80979085|gb|ABB54745.1| Dicer-2 [Drosophila melanogaster]
          Length = 1715

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/96 (36%), Positives = 52/96 (54%), Gaps = 1/96 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +S LEK +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1424 INHSYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1483

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
                  G L+   ++LV+  T + +     L  FI 
Sbjct: 1484 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1519



 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 26   ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85
            A+T SS +  +    ERLE LGD  L L  +  L + +    EG L+   + LVS     
Sbjct: 1190 AITASSAADVF--DMERLEILGDSFLKLSATLYLASKYSDWNEGTLTEVKSKLVSNRNLL 1247

Query: 86   QVARELDLASFI 97
                + D+   +
Sbjct: 1248 FCLIDADIPKTL 1259


>gi|80979097|gb|ABB54751.1| Dicer-2 [Drosophila melanogaster]
          Length = 1715

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/96 (36%), Positives = 52/96 (54%), Gaps = 1/96 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +S LEK +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1424 INHSYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1483

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
                  G L+   ++LV+  T + +     L  FI 
Sbjct: 1484 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1519



 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 26   ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85
            A+T SS +  +    ERLE LGD  L L  +  L + +    EG L+   + LVS     
Sbjct: 1190 AITASSAADVF--DMERLEILGDSFLKLSATLYLASKYSDWNEGTLTEVKSKLVSNRNLL 1247

Query: 86   QVARELDLASFI 97
                + D+   +
Sbjct: 1248 FCLIDADIPKTL 1259


>gi|80979091|gb|ABB54748.1| Dicer-2 [Drosophila melanogaster]
          Length = 1715

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/96 (36%), Positives = 52/96 (54%), Gaps = 1/96 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +S LEK +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1424 INHSYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1483

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
                  G L+   ++LV+  T + +     L  FI 
Sbjct: 1484 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1519



 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 26   ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85
            A+T SS +  +    ERLE LGD  L L  +  L + +    EG L+   + LVS     
Sbjct: 1190 AITASSAADVF--DMERLEILGDSFLKLSATLYLASKYSDWNEGTLTEVKSKLVSNRNLL 1247

Query: 86   QVARELDLASFI 97
                + D+   +
Sbjct: 1248 FCLIDADIPKTL 1259


>gi|80979093|gb|ABB54749.1| Dicer-2 [Drosophila melanogaster]
          Length = 1715

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/96 (36%), Positives = 52/96 (54%), Gaps = 1/96 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +S LEK +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1424 INHSYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1483

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
                  G L+   ++LV+  T + +     L  FI 
Sbjct: 1484 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1519



 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 26   ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85
            A+T SS +  +    ERLE LGD  L L  +  L + +    EG L+   + LVS     
Sbjct: 1190 AITASSAADVF--DMERLEILGDSFLKLSATLYLASKYSDWNEGTLTEVKSKLVSNRNLL 1247

Query: 86   QVARELDLASFI 97
                + D+   +
Sbjct: 1248 FCLIDADIPKTL 1259


>gi|119498655|ref|XP_001266085.1| RNase3 domain protein [Neosartorya fischeri NRRL 181]
 gi|119414249|gb|EAW24188.1| RNase3 domain protein [Neosartorya fischeri NRRL 181]
          Length = 373

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 101/246 (41%), Gaps = 27/246 (10%)

Query: 2   SALRYSTLEKRIGYAFANRSL-------LEKA-LTHSSISHSYQESYERLEFLGDRILGL 53
           +++ ++  ++  G +F+   L       LE A  TH  +S   + +Y+RLE LGD  + L
Sbjct: 117 NSVEFARTQEN-GNSFSLPELPPILDSSLELAVFTHPGLSKDSKSTYDRLEILGDAYIEL 175

Query: 54  LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
           + +  +++ F+    G++S     LV  ET S+ A    L     V  DL        T 
Sbjct: 176 IATRFIWSRFEDISSGQISQIRELLVKNETLSEFATLYGLDGRASVPQDLLNQ-PRRWTK 234

Query: 114 IQADVVESLIAALYLDG---GIEVAGTFVDKYWKQRALKS--GKFRRDAKTELQEWAHAK 168
            + D+ ES +AA+ L     G  VA  ++ + W  R   +   +   DAK  L +    K
Sbjct: 235 TKGDIFESYVAAIILSRPTDGYHVAERWLTQLWLPRLTDTVIPRTALDAKETLAKRIMGK 294

Query: 169 FGVTPEYKVTFRSGP----DHDPRFTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEV 219
            GV  +Y       P         F V V ++G          G   SK  A   AA + 
Sbjct: 295 -GVKLKY--VDERSPVQSRGGMQTFYVGVYLTGWGWQNKHLGSGHGPSKAVAGDAAARQA 351

Query: 220 LKREGI 225
           L  E +
Sbjct: 352 LLNEPL 357


>gi|15229816|ref|NP_189978.1| ribonuclease III family protein [Arabidopsis thaliana]
 gi|7594553|emb|CAB88120.1| putative protein [Arabidopsis thaliana]
 gi|94450858|gb|ABF19799.1| dicer-like 3 [Arabidopsis thaliana]
 gi|332644321|gb|AEE77842.1| protein dicer-like 3 [Arabidopsis thaliana]
          Length = 1531

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 53/178 (29%), Positives = 88/178 (49%), Gaps = 22/178 (12%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             LE++I + F+ + LL++A+THSS+  SY  SYERLEFLGD +L  LI+  LFN ++   
Sbjct: 1151 ELERKIQHEFSAKFLLKEAITHSSLRESY--SYERLEFLGDSVLDFLITRHLFNTYEQTG 1208

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFI--------------RVSSDLRKDVCSFMTS 113
             GE++   ++ V+ E  +QVA + +L + +               +S     +    + S
Sbjct: 1209 PGEMTDLRSACVNNENFAQVAVKNNLHTHLQRCATVLETQINDYLMSFQKPDETGRSIPS 1268

Query: 114  I-----QADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTELQEWA 165
            I       DVVES+  AL +D  +++   + V +      +   K +     EL E  
Sbjct: 1269 IQGPKALGDVVESIAGALLIDTRLDLDQVWRVFEPLLSPLVTPDKLQLPPYRELNELC 1326



 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 32/65 (49%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
            S ERLE LGD +L  + S  LF  +    EG+LS +  S++S     ++     L  +IR
Sbjct: 971  SMERLELLGDSVLKYVASCHLFLKYPDKDEGQLSRQRQSIISNSNLHRLTTSRKLQGYIR 1030

Query: 99   VSSDL 103
              +  
Sbjct: 1031 NGAFE 1035


>gi|159126180|gb|EDP51296.1| nucleolar RNAse III, putative [Aspergillus fumigatus A1163]
          Length = 373

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 88/221 (39%), Gaps = 25/221 (11%)

Query: 23  LEKA-LTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
           LE A  TH  +S   + +Y+RLE LGD  + L+ +  ++  ++    G++S     LV  
Sbjct: 144 LELAVFTHPGLSKDSKLTYDRLEILGDAYIELIATRFIWGRYEGFSSGQISQIRELLVKN 203

Query: 82  ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG---GIEVAGTF 138
           ET S+ A    L +   V  DL        T  + D+ ES +AA+ L     G  VA  +
Sbjct: 204 ETLSEFATLYGLDNRASVPRDLLSQ-PRRWTKTKGDIFESYVAAVILSRPSDGYHVAERW 262

Query: 139 VDKYWKQRALKS--GKFRRDAKTELQEWAHAK---FGVTPEYKVTFRSGPDHDP----RF 189
           + + W  R   +   +   DAK    E    +    GV  +Y       P         F
Sbjct: 263 LTRLWLPRLTDAVIPRTALDAK----ETLAKRIMGKGVKLKY--VDERSPAQSRGGMQTF 316

Query: 190 TVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            V V ++G          G   SK  A   AA + L  E +
Sbjct: 317 YVGVYLTGWGWQNKHLGSGHGPSKAVAGDAAARQALLNEPL 357


>gi|307108113|gb|EFN56354.1| hypothetical protein CHLNCDRAFT_144841 [Chlorella variabilis]
          Length = 229

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 76/162 (46%), Gaps = 11/162 (6%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           S  R   L++R+GY F+N  LL  AL HSS + +       + ++GD  + L+++  +  
Sbjct: 61  SKERIHELQERLGYRFSNLYLLRLALIHSSAAPTT--HNSIMAWIGDAAMYLVVAEEVAA 118

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR-KDVCSFMTSIQADVVE 120
               A  G+LS    +L+    C + A  L L+ ++ +   +R ++     +++ A++ E
Sbjct: 119 ALGYAPIGQLSEVRKTLIGRAMCEKYAAHLGLSEYLVLGKSVRIQNAGVASSNMLAELFE 178

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162
           +++ A+YLDG ++         +            D  + LQ
Sbjct: 179 AVMGAVYLDGDLDAVRRCYISLF--------PLPADPLSLLQ 212


>gi|238479963|ref|NP_001154662.1| ribonuclease III family protein [Arabidopsis thaliana]
          Length = 1577

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 53/178 (29%), Positives = 88/178 (49%), Gaps = 22/178 (12%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             LE++I + F+ + LL++A+THSS+  SY  SYERLEFLGD +L  LI+  LFN ++   
Sbjct: 1197 ELERKIQHEFSAKFLLKEAITHSSLRESY--SYERLEFLGDSVLDFLITRHLFNTYEQTG 1254

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFI--------------RVSSDLRKDVCSFMTS 113
             GE++   ++ V+ E  +QVA + +L + +               +S     +    + S
Sbjct: 1255 PGEMTDLRSACVNNENFAQVAVKNNLHTHLQRCATVLETQINDYLMSFQKPDETGRSIPS 1314

Query: 114  I-----QADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTELQEWA 165
            I       DVVES+  AL +D  +++   + V +      +   K +     EL E  
Sbjct: 1315 IQGPKALGDVVESIAGALLIDTRLDLDQVWRVFEPLLSPLVTPDKLQLPPYRELNELC 1372



 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 32/65 (49%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
            S ERLE LGD +L  + S  LF  +    EG+LS +  S++S     ++     L  +IR
Sbjct: 1017 SMERLELLGDSVLKYVASCHLFLKYPDKDEGQLSRQRQSIISNSNLHRLTTSRKLQGYIR 1076

Query: 99   VSSDL 103
              +  
Sbjct: 1077 NGAFE 1081


>gi|238479965|ref|NP_001154663.1| ribonuclease III family protein [Arabidopsis thaliana]
 gi|322518661|sp|Q9LXW7|DCL3_ARATH RecName: Full=Endoribonuclease Dicer homolog 3; AltName:
            Full=Dicer-like protein 3; Short=AtDCL3
 gi|332644322|gb|AEE77843.1| protein dicer-like 3 [Arabidopsis thaliana]
          Length = 1580

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 53/178 (29%), Positives = 88/178 (49%), Gaps = 22/178 (12%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             LE++I + F+ + LL++A+THSS+  SY  SYERLEFLGD +L  LI+  LFN ++   
Sbjct: 1200 ELERKIQHEFSAKFLLKEAITHSSLRESY--SYERLEFLGDSVLDFLITRHLFNTYEQTG 1257

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFI--------------RVSSDLRKDVCSFMTS 113
             GE++   ++ V+ E  +QVA + +L + +               +S     +    + S
Sbjct: 1258 PGEMTDLRSACVNNENFAQVAVKNNLHTHLQRCATVLETQINDYLMSFQKPDETGRSIPS 1317

Query: 114  I-----QADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTELQEWA 165
            I       DVVES+  AL +D  +++   + V +      +   K +     EL E  
Sbjct: 1318 IQGPKALGDVVESIAGALLIDTRLDLDQVWRVFEPLLSPLVTPDKLQLPPYRELNELC 1375



 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 32/65 (49%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
            S ERLE LGD +L  + S  LF  +    EG+LS +  S++S     ++     L  +IR
Sbjct: 1020 SMERLELLGDSVLKYVASCHLFLKYPDKDEGQLSRQRQSIISNSNLHRLTTSRKLQGYIR 1079

Query: 99   VSSDL 103
              +  
Sbjct: 1080 NGAFE 1084


>gi|158705946|sp|Q0UL22|DCL2_PHANO RecName: Full=Dicer-like protein 2; Includes: RecName:
            Full=Endoribonuclease DCL2; Includes: RecName:
            Full=ATP-dependent helicase DCL2
          Length = 1399

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 61/276 (22%), Positives = 93/276 (33%), Gaps = 63/276 (22%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNH 62
            +    LE  IGY F  + LL +ALTH+S S  +   SYERLEFLGD +L  +IS  L  H
Sbjct: 1092 MGLDVLETLIGYTFKKKPLLLEALTHASFSGPHVHCSYERLEFLGDAVLDYIISKRLHAH 1151

Query: 63   FDSAKEGELSVRFNSLVSAETCS-------------------QVARELDLASFIRVSS-- 101
                   ++     + V+A   +                     +++  +  F+R  S  
Sbjct: 1152 SPELSHQKMHAIRTATVNASFLAFRLFETTIDEETINKTSMRPESQKRAIWQFLRSGSPS 1211

Query: 102  ----------------DLRKDVCSFM-------------TSIQADVVESLIAALYLD--G 130
                            D      +                   +D+VES+I A+Y+D  G
Sbjct: 1212 LNANRDNALRQHEQVRDEIIIGLNEAARFPWHLFALTDPPKFLSDMVESVIGAVYIDSLG 1271

Query: 131  GIEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF--RSGPD 184
             I      V +          L +G      K  L   A  K     +Y          +
Sbjct: 1272 DILTCEAIVRRLGILDCLDHILCNGVDCLHPKERLGHLAVDKG---VQYARVGMNTEPNE 1328

Query: 185  HDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEV 219
             D  +   V++ G           +  AE VAA + 
Sbjct: 1329 GDKMYKCQVKVGGEDVGDVAEGLKRLNAETVAAWKA 1364



 Score = 81.3 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 57/139 (41%), Gaps = 19/139 (13%)

Query: 22   LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
            LL +AL   S +    ++Y+RLEFLGD IL  + +  L        E  L+ +   +VS 
Sbjct: 930  LLTRAL--KSSAADGNDNYQRLEFLGDCILKFIATVHLMAANPKWPESHLTAKKGRIVSN 987

Query: 82   ETCSQVARELDLASFI------------RVSSDLRKDVC-----SFMTSIQADVVESLIA 124
               ++      L  F+            R + DL  +          + + AD++ESLI 
Sbjct: 988  GFLARATIAAGLDRFMITKSFTGAKWAPRYAGDLLAETGPAVKEERSSKLIADIIESLIG 1047

Query: 125  ALYLDGGIEVAGTFVDKYW 143
            A Y  GG E A   V    
Sbjct: 1048 ACYTVGGFEKAVLCVQTLL 1066


>gi|332644323|gb|AEE77844.1| protein dicer-like 3 [Arabidopsis thaliana]
          Length = 1570

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 53/178 (29%), Positives = 88/178 (49%), Gaps = 22/178 (12%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             LE++I + F+ + LL++A+THSS+  SY  SYERLEFLGD +L  LI+  LFN ++   
Sbjct: 1190 ELERKIQHEFSAKFLLKEAITHSSLRESY--SYERLEFLGDSVLDFLITRHLFNTYEQTG 1247

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFI--------------RVSSDLRKDVCSFMTS 113
             GE++   ++ V+ E  +QVA + +L + +               +S     +    + S
Sbjct: 1248 PGEMTDLRSACVNNENFAQVAVKNNLHTHLQRCATVLETQINDYLMSFQKPDETGRSIPS 1307

Query: 114  I-----QADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTELQEWA 165
            I       DVVES+  AL +D  +++   + V +      +   K +     EL E  
Sbjct: 1308 IQGPKALGDVVESIAGALLIDTRLDLDQVWRVFEPLLSPLVTPDKLQLPPYRELNELC 1365



 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 32/65 (49%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
            S ERLE LGD +L  + S  LF  +    EG+LS +  S++S     ++     L  +IR
Sbjct: 1010 SMERLELLGDSVLKYVASCHLFLKYPDKDEGQLSRQRQSIISNSNLHRLTTSRKLQGYIR 1069

Query: 99   VSSDL 103
              +  
Sbjct: 1070 NGAFE 1074


>gi|170091728|ref|XP_001877086.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164648579|gb|EDR12822.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1358

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/259 (20%), Positives = 88/259 (33%), Gaps = 53/259 (20%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            +     S +E+ IG+ F    LL +ALTHSS+      SY RLEF+GD IL  ++   +F
Sbjct: 1069 LRPESTSAIERIIGHNFQRPHLLAQALTHSSMQGHESASYGRLEFIGDAILDFMVIQHIF 1128

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS------------------- 101
            N   +   G L++   ++VS    + V     L   +   S                   
Sbjct: 1129 NRDQTLSPGALTLLKGAMVSNSALAAVCVSSGLRKHLLFESYQLAGSIEVYANELKARQQ 1188

Query: 102  -------DLRKDVCSFM-----TSIQADVVESLIAALYLDGGIEVAGTF-----VDKYWK 144
                      +    +          +DVVES+I A+Y+       G       V K + 
Sbjct: 1189 KEYLAAEREGRSPGQYWLGIEPPKALSDVVESIIGAIYISDDFTPIGAERLFNNVLKPFY 1248

Query: 145  QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
             + +            L E   A+     E      S  ++  +    V +  +  A   
Sbjct: 1249 DKHITLQTLSHHPTKILFELFQAQGCHLFE-----ISKENNAEKTLCHVLVHEVILAS-- 1301

Query: 205  DCSKRAAE----QVAAAEV 219
                  AE     +AA + 
Sbjct: 1302 ------AEDVMPTLAARQA 1314



 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 1   MSALRYSTLEKRIGYAFAN----RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIS 56
           M  +    + K +   F +      LL  +L   S    Y  +YERLE LGD  L  L +
Sbjct: 808 MRRIDDLLIVKELNARFFDHAIREDLLHVSLCAPSAGLEY--NYERLELLGDAFLKYLCT 865

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
             +F    +  EG L +    L+S ++  + +  + L  +I+
Sbjct: 866 IYVFVAEPTQNEGSLHIARQKLISNKSLLENSNLIGLPVYIQ 907


>gi|52550203|gb|AAU84052.1| ribonuclease III [uncultured archaeon GZfos36D8]
          Length = 262

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 62/244 (25%), Positives = 106/244 (43%), Gaps = 29/244 (11%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLF 60
                 LE  IG+ F N +LLE+A+T  S S+ +    +Y+ LEFLGDR+L L+++  LF
Sbjct: 13  KFELMELEASIGHQFKNIALLEEAITTGSYSNEHPGSSNYQTLEFLGDRVLSLILAEELF 72

Query: 61  N--HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
                 S  EG+++     L +    ++    + L ++IR +             + ADV
Sbjct: 73  KLSKSASLDEGKMTFLKAELENNLRLAEYGENIGLRNYIRANEKRED----IRPKVIADV 128

Query: 119 VESLIAALYLDGG----IEVAGTFVDKYW----KQRALKSGKFRRDAKTELQEWAHAKFG 170
            E++  A+YLD      I+    F+ K+      ++ + SGK     + + +     K  
Sbjct: 129 FEAICGAIYLDTEESIRIKEVKKFLLKFEILERIKKEMSSGKGFLPIRNQFENKFREKHR 188

Query: 171 VTPEYKVTFRS--GPDHDPRFTVV-VEISGLAPAQ-----GMD-----CSKRAAEQVAAA 217
             PE K   +S  G +H  R+ +    I  +   +     G+       SK+ AE  A  
Sbjct: 189 CNPEIKFEQKSTLGEEHPTRWRIEKCSIKDIQTGEYVELKGVKSDKWFSSKKDAETDAFE 248

Query: 218 EVLK 221
           +  K
Sbjct: 249 QAYK 252


>gi|254584338|ref|XP_002497737.1| ZYRO0F12342p [Zygosaccharomyces rouxii]
 gi|238940630|emb|CAR28804.1| ZYRO0F12342p [Zygosaccharomyces rouxii]
          Length = 456

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 54/233 (23%), Positives = 87/233 (37%), Gaps = 30/233 (12%)

Query: 16  AFANRSLLEKALTHSSI---------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
              + ++  +   H S          S   +   ERLEFLGD +L  +I+ +++N F   
Sbjct: 185 EIKDPAVRARVFIHKSTIKDKLYLTESEMIKAHNERLEFLGDSVLNTVITMIIYNKFPRY 244

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF---MTSIQADVVESLI 123
            EG+LS    +LVS E   +      L   +R + D+ K+  +F      + ADV E+ I
Sbjct: 245 TEGQLSKLRMTLVSNERLKEWTFMYGLEKKLRTNFDMTKENANFQQGKRKLYADVFEAYI 304

Query: 124 AALYLD---GGIEVAGTFVDKYWKQRALK----------SGKFRRDAKTELQEWAHAKFG 170
             L  D     +     ++ K  K    +          +     +AK +L         
Sbjct: 305 GGLIEDDPKHNMPRVRKWLSKLAKPVMDEVTVKDVGLESTEDLDLNAKRQLYSLI-GFAA 363

Query: 171 VTPEYKVTFRSGPDH-DPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +   Y    R  P + DP   V   +  G     G   + + A   AA  VLK
Sbjct: 364 LNLHYVTVKR--PTNTDPNTVVECRVGDGTVLGSGEGRNIKIAGLKAAQNVLK 414


>gi|224613148|dbj|BAH24251.1| dsRNA-specific ribonuclease RNaseIII [Tsuwabuki witches'-broom
           phytoplasma]
          Length = 159

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 51/137 (37%), Gaps = 3/137 (2%)

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           ++ +    V  ++    A E+ L  +I +    +K       SI AD  E+L  A+YLD 
Sbjct: 1   MTKKRAQAVCVDSLLIYAEEIQLKKYIYLGKGEKKRSV-HNYSIVADAFEALFGAIYLDL 59

Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           G E A            L       D KT+LQE    +      YK+    G  H+  F 
Sbjct: 60  GFEQAQKTFYHVVLP-CLNKIINIIDFKTQLQELVQTR-KQNITYKIISEKGLAHEKEFV 117

Query: 191 VVVEISGLAPAQGMDCS 207
             V +      +G   +
Sbjct: 118 SEVYLGKEWLGKGNGKT 134


>gi|70984786|ref|XP_747899.1| nucleolar RNAse III [Aspergillus fumigatus Af293]
 gi|66845527|gb|EAL85861.1| nucleolar RNAse III, putative [Aspergillus fumigatus Af293]
          Length = 373

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 88/221 (39%), Gaps = 25/221 (11%)

Query: 23  LEKA-LTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
           LE A  TH  +S   + +Y+RLE LGD  + L+ +  ++  ++    G++S     LV  
Sbjct: 144 LELAVFTHPGLSKDSKLTYDRLEILGDAYIELIATRFIWGRYEGFSSGQISQIRELLVKN 203

Query: 82  ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG---GIEVAGTF 138
           ET S+ A    L +   V  DL        T  + D+ ES +AA+ L     G  VA  +
Sbjct: 204 ETLSEFATLYGLDNRASVPRDLLSQ-PRRWTKTKGDIFESYVAAVILSRPSDGYHVAERW 262

Query: 139 VDKYWKQRALKS--GKFRRDAKTELQEWAHAK---FGVTPEYKVTFRSGPDHDP----RF 189
           + + W  R   +   +   DAK    E    +    GV  +Y       P         F
Sbjct: 263 LTQLWLPRLTDAVIPRTALDAK----ETLAKRIMGKGVKLKY--VDERSPAQSRGGMQTF 316

Query: 190 TVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            V V ++G          G   SK  A   AA + L  E +
Sbjct: 317 YVGVYLTGWGWQNKHLGSGHGPSKAVAGDAAARQALLNEPL 357


>gi|146149942|gb|ABQ02405.1| dicer [Schistosoma mansoni]
          Length = 2641

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 19/116 (16%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI--------SHSYQE-----------SYERLEF 45
            R+  LE  + Y F + SLL +A TH S         S++  +            Y+RLEF
Sbjct: 2194 RFDELESSLNYTFKDPSLLIQAFTHPSYHQLRVLSTSNNLSDQSNLMFSTDLDCYQRLEF 2253

Query: 46   LGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS 101
            LGD +L  +I+  L+        G L+   ++LV+    + +A  + L  + R SS
Sbjct: 2254 LGDAVLDYVITRFLYEDSKQHSPGVLTDLRSALVNNNIFAALAVRIGLHKYFRASS 2309



 Score = 57.4 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 25   KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
            +ALT  S S+ +  + ER+E +GD  L  +++  L+  +  A EG+LS   + +V     
Sbjct: 1949 QALT-MSCSNDFI-NLERMETIGDSFLKFVVTVHLYLTYPEAHEGKLSHLRSRIVCNSNL 2006

Query: 85   SQVARELDLAS 95
             ++ +  DL +
Sbjct: 2007 YRLGKAKDLQN 2017



 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 43/115 (37%), Gaps = 10/115 (8%)

Query: 110  FMTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAH 166
             +    +D+ ESL  A++LD     +          K+R  + +    +    +L E   
Sbjct: 2510 EIPKALSDIFESLAGAIFLDSNFSLDTVWQIFYPIMKERIERYTACIPKSPVRQLLEL-- 2567

Query: 167  AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
                  PE     R+    D R +V   + G     G+  + R A+ +AA   L+
Sbjct: 2568 -----EPEGTKFERARRMVDGRISVCAHVLGKGRFYGVGRNYRLAKSLAAKRALR 2617


>gi|195584278|ref|XP_002081941.1| Dcr-2 [Drosophila simulans]
 gi|194193950|gb|EDX07526.1| Dcr-2 [Drosophila simulans]
          Length = 1666

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 1/96 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +S LE  +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1378 INHSHLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1437

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
                  G L+   ++LV+  T + +     L  FI 
Sbjct: 1438 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1473



 Score = 53.2 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 26   ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85
            A+T SS +  +    ERLE LGD  L L  +  L + +    EG L+   + LVS     
Sbjct: 1164 AITASSATDVF--DMERLEILGDSFLKLSATLYLASKYSDWNEGTLTQVKSKLVSNRNLL 1221

Query: 86   QVARELDLASFI 97
                + D+   +
Sbjct: 1222 YCLADTDIPKKL 1233


>gi|295670335|ref|XP_002795715.1| RNase3 domain-containing protein [Paracoccidioides brasiliensis Pb01]
 gi|226284800|gb|EEH40366.1| RNase3 domain-containing protein [Paracoccidioides brasiliensis Pb01]
          Length = 1346

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 83/221 (37%), Gaps = 21/221 (9%)

Query: 11   KRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
             R+GY F    LL  A TH+S     S    Y+RLEFLGD +L ++    L++ +     
Sbjct: 1099 DRLGYRFKYPRLLSSAFTHASYPTVWSKVPCYQRLEFLGDSLLDMVCVEHLYHKYPDRDP 1158

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
              L+      V +        +L L    R+ + + +           +++E+ I A+++
Sbjct: 1159 QWLTEHK---VFSNHLKMRGWKLKLQ---RLKASIHQTFG-QRPVTLRNMLEAYIGAIFV 1211

Query: 129  DG--GIEVAGTFV----DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
            D     EV   F      KY++  ++      +   T        +    P  +V F   
Sbjct: 1212 DSNFSFEVVEDFFQQYPKKYFEDISIYDTFANKHP-TA---CTLPRTAFMPAGEVDFVD- 1266

Query: 183  PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                  F   V I     A+G+  S   A+  A+   L + 
Sbjct: 1267 AAECRVF-AAVIIHDEFVAEGIASSAGYAKVKASENALAKL 1306



 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/182 (23%), Positives = 64/182 (35%), Gaps = 32/182 (17%)

Query: 20   RSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
              L  +ALT        H +          ++YERLEFLGD  L +  S  LF       
Sbjct: 914  PELALEALTKDSDNTEEHRAEQIHFQRGMGKNYERLEFLGDCFLKMSTSISLFAMNADND 973

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ------ADVVES 121
            E +  V+   L+  +     A  L +  F+R     R++       +       AD+ E+
Sbjct: 974  EFDFHVKRMCLICNQNLFNTAMSLGIYEFVRTQGFSRRNWYPEGIKLLQADKSIADICEA 1033

Query: 122  LIAALYLDGG----IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
            LI A  L GG     + A   V  +      +      D     Q +        P Y++
Sbjct: 1034 LIGASLLSGGRVHRFDTAVKAVTAFVNSENHQVS----DW----QSYV--GLYSLPRYQI 1083

Query: 178  TF 179
            T 
Sbjct: 1084 TE 1085


>gi|80979101|gb|ABB54753.1| Dicer-2 [Drosophila simulans]
          Length = 1714

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 1/96 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +S LE  +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1426 INHSHLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1485

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
                  G L+   ++LV+  T + +     L  FI 
Sbjct: 1486 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1521



 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 26   ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85
            A+T SS +  +    ERLE LGD  L L  +  L + +    EG L+   + LVS     
Sbjct: 1192 AITASSATDVF--DMERLEILGDSFLKLCATLYLASKYSDWNEGTLTQVKSKLVSNRNLL 1249

Query: 86   QVARELDLASFI 97
                + D+   +
Sbjct: 1250 YCLADTDIPKKL 1261


>gi|80979105|gb|ABB54755.1| Dicer-2 [Drosophila simulans]
 gi|80979109|gb|ABB54757.1| Dicer-2 [Drosophila simulans]
          Length = 1714

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 1/96 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +S LE  +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1426 INHSHLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1485

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
                  G L+   ++LV+  T + +     L  FI 
Sbjct: 1486 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1521



 Score = 53.2 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 26   ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85
            A+T SS +  +    ERLE LGD  L L  +  L + +    EG L+   + LVS     
Sbjct: 1192 AITASSATDVF--DMERLEILGDSFLKLSATLYLASKYSDWNEGTLTQVKSKLVSNRNLL 1249

Query: 86   QVARELDLASFI 97
                + D+   +
Sbjct: 1250 YCLADTDIPKKL 1261


>gi|80979107|gb|ABB54756.1| Dicer-2 [Drosophila simulans]
          Length = 1567

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 1/96 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +S LE  +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1426 INHSHLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1485

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
                  G L+   ++LV+  T + +     L  FI 
Sbjct: 1486 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1521



 Score = 53.2 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 26   ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85
            A+T SS +  +    ERLE LGD  L L  +  L + +    EG L+   + LVS     
Sbjct: 1192 AITASSATDVF--DMERLEILGDSFLKLSATLYLASKYSDWNEGTLTQVKSKLVSNRNLL 1249

Query: 86   QVARELDLASFI 97
                + D+   +
Sbjct: 1250 YCLADTDIPKKL 1261


>gi|80979115|gb|ABB54760.1| Dicer-2 [Drosophila simulans]
          Length = 1714

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 1/96 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +S LE  +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1426 INHSHLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1485

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
                  G L+   ++LV+  T + +     L  FI 
Sbjct: 1486 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1521



 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 26   ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85
            A+T SS +  +    ERLE LGD  L L  +  L + +    EG L+   + LVS     
Sbjct: 1192 AITASSATDVF--DMERLEILGDSFLKLSATLYLASKYSDWNEGTLTQVKSKLVSNRNLL 1249

Query: 86   QVARELDLASFI 97
                + D+   +
Sbjct: 1250 YCLADTDIPKKL 1261


>gi|80979103|gb|ABB54754.1| Dicer-2 [Drosophila simulans]
          Length = 1537

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 1/96 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +S LE  +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1426 INHSHLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1485

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
                  G L+   ++LV+  T + +     L  FI 
Sbjct: 1486 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1521



 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 26   ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85
            A+T SS +  +    ERLE LGD  L L  +  L + +    EG L+   + LVS     
Sbjct: 1192 AITASSATDVF--DMERLEILGDSFLKLSATLYLASKYSDWNEGTLTQVKSKLVSNRNLL 1249

Query: 86   QVARELDLASFI 97
                + D+   +
Sbjct: 1250 YCLADTDIPKKL 1261


>gi|80979111|gb|ABB54758.1| Dicer-2 [Drosophila simulans]
          Length = 1564

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 1/96 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +S LE  +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1426 INHSHLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1485

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
                  G L+   ++LV+  T + +     L  FI 
Sbjct: 1486 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1521



 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 26   ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85
            A+T SS +  +    ERLE LGD  L L  +  L + +    EG L+   + LVS     
Sbjct: 1192 AITASSATDVF--DMERLEILGDSFLKLSATLYLASKYSDWNEGTLTQVKSKLVSNRNLL 1249

Query: 86   QVARELDLASFI 97
                + D+   +
Sbjct: 1250 YCLADTDIPKKL 1261


>gi|80979113|gb|ABB54759.1| Dicer-2 [Drosophila simulans]
          Length = 1565

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 1/96 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +S LE  +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1426 INHSHLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1485

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
                  G L+   ++LV+  T + +     L  FI 
Sbjct: 1486 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1521



 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 26   ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85
            A+T SS +  +    ERLE LGD  L L  +  L + +    EG L+   + LVS     
Sbjct: 1192 AITASSATDVF--DMERLEILGDSFLKLSATLYLASKYSDWNEGTLTQVKSKLVSNRNLL 1249

Query: 86   QVARELDLASFI 97
                + D+   +
Sbjct: 1250 YCLADTDIPKKL 1261


>gi|322704697|gb|EFY96289.1| Dicer-like protein 1 [Metarhizium anisopliae ARSEF 23]
          Length = 1476

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 71/193 (36%), Gaps = 34/193 (17%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDSA 66
             ++  IGY F +  LL  A  H S  +  +  +Y+RLEFLGD +L + I   LF  +  A
Sbjct: 1199 KVKASIGYNFRSPKLLRSAFKHPSYPYEPELPNYQRLEFLGDALLDVAIVDFLFQRYPLA 1258

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFM-------------- 111
                L+    ++ S    S +  EL L   I    S +   +  F+              
Sbjct: 1259 DPQWLTEHKMAMASNHFFSFLCVELGLHRHILSTGSSIMGHIAGFVEQIEKAKSQTEDGV 1318

Query: 112  ------------TSIQADVVESLIAALYLDGGIEVA------GTFVDKYWKQRALKSGKF 153
                            +D++E+++ A+Y D   +          F+  Y++   L     
Sbjct: 1319 LQLDFWLNTEHPPKALSDILEAVVGAMYEDSKYDYNSVRNFFTKFIAPYFQDMTLYDTYA 1378

Query: 154  RRDAKTELQEWAH 166
                 T+L +   
Sbjct: 1379 GGHPVTQLTKLMQ 1391



 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 59/161 (36%), Gaps = 25/161 (15%)

Query: 20   RSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
              L  +ALT     +     ++YERLEFLGD  L +  +  LF    +  E E  V    
Sbjct: 1017 PPLALEALTKGEEDVDVQTSKNYERLEFLGDAFLKMATTISLFTLIPNRNEFEYHVERMI 1076

Query: 78   LVSAETCSQVARELDLASFIRVSSDLRKDVC-------------------SFMTSIQADV 118
            L+  +     A +  L  ++R S    +                             ADV
Sbjct: 1077 LICNKNLFNHAVDRGLQEYVR-SRGFDRRSWYPDLVLRKGKKHKPVGLTQRLADKSIADV 1135

Query: 119  VESLIAALYLD--GGIEVAGTFVDKYWKQRALKSGKFRRDA 157
             E+LI A Y+    G+++A   V    + +  +  K+  D 
Sbjct: 1136 CEALIGAAYMTEPEGMDLAVKAVTVMVQSKNHRMKKYS-DY 1175


>gi|195996181|ref|XP_002107959.1| hypothetical protein TRIADDRAFT_51985 [Trichoplax adhaerens]
 gi|190588735|gb|EDV28757.1| hypothetical protein TRIADDRAFT_51985 [Trichoplax adhaerens]
          Length = 685

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 95/247 (38%), Gaps = 45/247 (18%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLIST 57
           +A     LE  +GY+F +R LL  ALTH++ +H       E Y+RLEFLGD IL  ++  
Sbjct: 426 NAHNLKDLEAVLGYSFKDRKLLISALTHATYNHNRIAEGVECYQRLEFLGDAILQYIVVR 485

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI-------------------- 97
             ++  ++ K  +L     + +  E+ + +     +  +                     
Sbjct: 486 HCYHANNNYKPADLHDFVEASLQNESLAVMTMVYGIHKYFFYNSPSLFSQINQLLQIVDT 545

Query: 98  ------RVSSDLRKDV-------CSFMTSIQADVVESLIAALYLDGG--IEVAGTFVDKY 142
                 R+S++ +  V          +     D+ ESLI A+++D G  IEV    V + 
Sbjct: 546 NEECEQRLSTEEKALVYSNSLKDGVMIPKPLGDLFESLIGAIFIDCGRSIEVVNDLVLRL 605

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            + +     +     K+      H KF     +K       D+  R  + +++   +   
Sbjct: 606 LQPQHAIFAQGV--PKSP-IRILHEKFPSGLLFK--KEKTEDNSLR-KLSLQVPDGSYFT 659

Query: 203 GMDCSKR 209
               + +
Sbjct: 660 ATGINYK 666



 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
           KALT +  +  +  + E LEFLGD  L   +S   F  +    EG+LS   + +VS E  
Sbjct: 248 KALTLARANDDF--NLETLEFLGDSYLKYAVSISFFLSYSKFHEGQLSSLKSKIVSNENL 305

Query: 85  SQVARELDLASFIR 98
            Q+  ++ L  +I 
Sbjct: 306 YQIGIKMGLPGYII 319


>gi|169608916|ref|XP_001797877.1| hypothetical protein SNOG_07542 [Phaeosphaeria nodorum SN15]
 gi|160701743|gb|EAT85008.2| hypothetical protein SNOG_07542 [Phaeosphaeria nodorum SN15]
          Length = 1017

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 61/276 (22%), Positives = 93/276 (33%), Gaps = 63/276 (22%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNH 62
           +    LE  IGY F  + LL +ALTH+S S  +   SYERLEFLGD +L  +IS  L  H
Sbjct: 710 MGLDVLETLIGYTFKKKPLLLEALTHASFSGPHVHCSYERLEFLGDAVLDYIISKRLHAH 769

Query: 63  FDSAKEGELSVRFNSLVSAETCS-------------------QVARELDLASFIRVSS-- 101
                  ++     + V+A   +                     +++  +  F+R  S  
Sbjct: 770 SPELSHQKMHAIRTATVNASFLAFRLFETTIDEETINKTSMRPESQKRAIWQFLRSGSPS 829

Query: 102 ----------------DLRKDVCSFM-------------TSIQADVVESLIAALYLD--G 130
                           D      +                   +D+VES+I A+Y+D  G
Sbjct: 830 LNANRDNALRQHEQVRDEIIIGLNEAARFPWHLFALTDPPKFLSDMVESVIGAVYIDSLG 889

Query: 131 GIEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF--RSGPD 184
            I      V +          L +G      K  L   A  K     +Y          +
Sbjct: 890 DILTCEAIVRRLGILDCLDHILCNGVDCLHPKERLGHLAVDKG---VQYARVGMNTEPNE 946

Query: 185 HDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEV 219
            D  +   V++ G           +  AE VAA + 
Sbjct: 947 GDKMYKCQVKVGGEDVGDVAEGLKRLNAETVAAWKA 982



 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 57/139 (41%), Gaps = 19/139 (13%)

Query: 22  LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
           LL +AL   S +    ++Y+RLEFLGD IL  + +  L        E  L+ +   +VS 
Sbjct: 548 LLTRAL--KSSAADGNDNYQRLEFLGDCILKFIATVHLMAANPKWPESHLTAKKGRIVSN 605

Query: 82  ETCSQVARELDLASFI------------RVSSDLRKDVC-----SFMTSIQADVVESLIA 124
              ++      L  F+            R + DL  +          + + AD++ESLI 
Sbjct: 606 GFLARATIAAGLDRFMITKSFTGAKWAPRYAGDLLAETGPAVKEERSSKLIADIIESLIG 665

Query: 125 ALYLDGGIEVAGTFVDKYW 143
           A Y  GG E A   V    
Sbjct: 666 ACYTVGGFEKAVLCVQTLL 684


>gi|194755862|ref|XP_001960198.1| GF13246 [Drosophila ananassae]
 gi|190621496|gb|EDV37020.1| GF13246 [Drosophila ananassae]
          Length = 1727

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 1/96 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + ++ LE+ +GY F +R  L +ALTH S  ++     Y++LEF+GD IL  LIS  +F +
Sbjct: 1441 INHANLEQNLGYTFKDRGYLLQALTHPSYPTNRITGCYQQLEFIGDAILDFLISGYIFEN 1500

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
                  G+L+   ++LV+  T + +     +  FI 
Sbjct: 1501 NTKMTPGQLTDLRSALVNNTTLACICVRHKIHLFIL 1536



 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 26/59 (44%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
              ERLE LGD  L +  S  L N +    EG L+   + LVS         E D+ + I
Sbjct: 1218 DMERLEMLGDSFLKMSGSLYLANRYADWNEGTLTQVKSKLVSNRNLLYCLSETDIPTRI 1276



 Score = 38.1 bits (88), Expect = 0.93,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 11/76 (14%)

Query: 110  FMTSIQADVVESLIAALYLDG-GIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHA 167
             +     DV+E+LIAA+YLD   +      +   +K    + +     +   +L E    
Sbjct: 1612 DVPKALGDVLEALIAAVYLDCRDLHRTWQVIYNLFKPEIKEFTRNVPINPIRQLNE---- 1667

Query: 168  KFGVTPEYKVTFRSGP 183
                +P Y     SGP
Sbjct: 1668 HKLASPIY-----SGP 1678


>gi|194880776|ref|XP_001974538.1| GG21041 [Drosophila erecta]
 gi|190657725|gb|EDV54938.1| GG21041 [Drosophila erecta]
          Length = 1729

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 84/236 (35%), Gaps = 71/236 (30%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  LE  +GY F +R  L +ALTH S  ++     Y+ LEF+GD IL  LIS  +F +
Sbjct: 1439 INHYHLENNLGYTFKDRGYLLQALTHPSYPTNRITGCYQELEFIGDAILDFLISVYIFEN 1498

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARE-------------------------------- 90
              +   G L+   ++LV+  T + +                                   
Sbjct: 1499 NTNMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENAMLAESISKFVHFQESQRHRV 1558

Query: 91   -----------------LDLASFIRV----------SSDLRKDVCS---------FMTSI 114
                             LDL  ++ +          S + + D             +   
Sbjct: 1559 TNHVRILLEEADVQPTSLDLDDYLDMTELNNALKSISQEEQNDQPRGEFNMSTNVDVPKA 1618

Query: 115  QADVVESLIAALYLDG-GIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAK 168
              DV+E+LIAA+YLD   ++     +   +K    + +     +   +L E  HA 
Sbjct: 1619 LGDVLEALIAAIYLDCRDLQRTWEVIFNLFKPELQEFARNVPINPIRQLMEHRHAN 1674



 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 26   ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85
            A+T  S   +     ERLE LGD  L L  +  L N +    EG L+   + LVS     
Sbjct: 1205 AIT--SSGTADVYDMERLEILGDSFLKLSATLYLANKYSDWNEGSLTQVKSMLVSNRNLL 1262

Query: 86   QVARELDLASFI 97
               R+ D+   I
Sbjct: 1263 YCLRDTDIPKKI 1274


>gi|224088236|ref|XP_002308384.1| dicer-like protein [Populus trichocarpa]
 gi|222854360|gb|EEE91907.1| dicer-like protein [Populus trichocarpa]
          Length = 1588

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 94/254 (37%), Gaps = 47/254 (18%)

Query: 2    SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL--- 58
             ++  +TLE  +G+ F  + LL +A  H S  +         EF G  IL   ++ +   
Sbjct: 1176 PSMDLATLENLLGHQFLYKGLLLQAFVHPSHKNGG-------EF-GVMILQFAMTLMFPP 1227

Query: 59   -----LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL---------- 103
                     +   K G L+   + LV+    + VA +     ++   SD           
Sbjct: 1228 EIGVPWRCFYPKMKPGHLTDLRSVLVNNRAFASVAVDRSFHEYLICDSDALSAATKKFVD 1287

Query: 104  ---------RKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKF 153
                     R         +  D+VES + A+ LD G ++   + +   +          
Sbjct: 1288 FVRTPKSERRLLEGPKCPKVLGDLVESSVGAILLDTGFDLNHIWKIMLSFLDPISSFSNL 1347

Query: 154  RRDAKTELQEWAHAKFGVTPEYKV-TFRSGPDHDPRFTVVVEISGLAP---AQGMDCSKR 209
            + +   EL+E   +      +++V   + G      F+V V +SG      A   + +K+
Sbjct: 1348 QINPVRELKELCQSHNW---DFEVPASKKG----RTFSVDVTLSGKDMNISASASNSNKK 1400

Query: 210  AAEQVAAAEVLKRE 223
             A ++A+ ++  R 
Sbjct: 1401 EAIRMASEKIYARL 1414



 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 46/126 (36%), Gaps = 26/126 (20%)

Query: 41   ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS--------------AETCSQ 86
            ERLE LGD  L   +    F   D+  EGEL+ + ++ V                  C +
Sbjct: 1023 ERLETLGDAFLKFAVGRHFFLLHDTLDEGELTRKRSNAVFIRDQPFDPYQFFALGHPCPR 1082

Query: 87   VARELDLASF----------IRVSSDLRKDVCSFM--TSIQADVVESLIAALYLDGGIEV 134
            +  +    +               S++R             +DVVE+LI A  +D G + 
Sbjct: 1083 ICTKESEGTIHSQCGSHVTGQAKGSEVRCSKGHHWLHNKTVSDVVEALIGAFLVDSGFKA 1142

Query: 135  AGTFVD 140
            A  F+ 
Sbjct: 1143 AIAFLR 1148



 Score = 41.6 bits (97), Expect = 0.078,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 17/40 (42%)

Query: 157  AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
            A++ L+E   A     P ++     GP H   FT  V + 
Sbjct: 1508 ARSRLREICAANSWKPPSFECCTEEGPSHLKSFTYKVVVE 1547


>gi|240277023|gb|EER40533.1| RNase3 domain-containing protein [Ajellomyces capsulatus H143]
 gi|325094961|gb|EGC48271.1| RNase3 domain-containing protein [Ajellomyces capsulatus H88]
          Length = 380

 Score =  115 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 52/218 (23%), Positives = 96/218 (44%), Gaps = 22/218 (10%)

Query: 23  LEKA-LTHSSISHSY-----QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           L+ A  TH  + +       +++YER+E LGD  + ++ + L+++ F     G LS    
Sbjct: 139 LQTAMFTHEGVHNPNTASLPEKNYERMELLGDAYIEIIATRLVWDTFPRLPAGRLSQIRE 198

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL---DGGIE 133
            LV  ET ++      L   ++V  ++R  V ++ T I+ D+ E+ +AA+ L   D G++
Sbjct: 199 LLVKNETLAEYTSLYGLDQKLQVPPNIRDQVKTW-TKIKGDLFEAYVAAVILSNRDNGVQ 257

Query: 134 VAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD---PR 188
           +A  ++ + W  +   ++  K     K +L +    K      Y +  +    H      
Sbjct: 258 LAEDWLTQLWIPKLEQIEKDKPVLRYKEDLAKLVMDKGIKL-SY-LDEKQSICHSGGLQT 315

Query: 189 FTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLK 221
           F V V ++G          G   SK  A   AA + L+
Sbjct: 316 FFVGVYLTGWGHKNECLGSGTGFSKVIAGNEAARKALE 353


>gi|80979095|gb|ABB54750.1| Dicer-2 [Drosophila melanogaster]
          Length = 1715

 Score =  115 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 1/96 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  LEK +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1424 INHFYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1483

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
                  G L+   ++LV+  T + +     L  FI 
Sbjct: 1484 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1519



 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 26   ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85
            A+T SS +  +    ERLE LGD  L L  +  L + +    EG L+   + LVS     
Sbjct: 1190 AITASSAADVF--DMERLEILGDSFLKLSATLYLASKYSDWNEGTLTEVKSKLVSNRNLL 1247

Query: 86   QVARELDLASFI 97
                + D+   +
Sbjct: 1248 FCLIDADIPKTL 1259


>gi|307133775|ref|NP_001182502.1| endoribonuclease Dicer isoform 2 [Homo sapiens]
 gi|300517087|gb|ADK25182.1| t-Dicer [Homo sapiens]
          Length = 1829

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 1/94 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1666 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1725

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
                G L+   ++LV+    + +A + D   + +
Sbjct: 1726 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFK 1759



 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 13   IGYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            IGY+      N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A E
Sbjct: 1283 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1340

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVS 100
            G LS   +  VS     ++ ++  L S + VS
Sbjct: 1341 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1372


>gi|260172508|ref|ZP_05758920.1| ribonuclease III [Bacteroides sp. D2]
          Length = 214

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 7/114 (6%)

Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---DAKTELQEWAHAKFG 170
           +  +  E+ I A+YLD G E    F+++    R +   K  R   + K++L EW+     
Sbjct: 1   MYGNAFEAFIGAIYLDQGYERCKQFMEQRIINRYIDLDKISRKEVNFKSKLIEWSQKN-K 59

Query: 171 VTPEYKVTFRSGPDHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +   +++  +   DHD  P F   V I GL    G   SK+ ++Q AA   +K+
Sbjct: 60  MEVSFELIEQF-LDHDSNPVFQTEVRIEGLPAGTGTGYSKKESQQNAAQMAIKK 112


>gi|281427125|ref|NP_001163918.1| dicer 1, ribonuclease type III [Xenopus laevis]
 gi|261826170|gb|ACX94846.1| truncated double-stranded RNA-specific endoribonuclease type III
            [Xenopus laevis]
          Length = 1795

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 1/94 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   EK+I Y F N++ L +A TH+S   ++  + Y+RLEFLGD IL  LI+  L+    
Sbjct: 1625 FENFEKKINYQFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1684

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
                G L+   ++LV+    + +A + D   + +
Sbjct: 1685 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFK 1718



 Score = 61.6 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            N  L+ +ALT S+ S  +  + ERLE  GD  L   I+T LF  +  + EG LS   +  
Sbjct: 1270 NPGLILQALTLSNASDGF--NLERLEMPGDSFLKHAITTYLFCTYPDSHEGRLSYMRSKK 1327

Query: 79   VSAETCSQVARELD 92
            VS     ++ ++  
Sbjct: 1328 VSNCNLYRLGKKKG 1341


>gi|296081735|emb|CBI20740.3| unnamed protein product [Vitis vinifera]
          Length = 1688

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 76/185 (41%), Gaps = 21/185 (11%)

Query: 2    SALRYSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLF 60
             A     LE +IGY F+ + LL +A+TH++         Y+RLEFLGD +L +LI+  L+
Sbjct: 1262 KANEIEILESKIGYEFSVKGLLLEAITHATEQELGVGYCYQRLEFLGDSVLDVLITWHLY 1321

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF---------- 110
                    GEL+   ++ V+ E+ +QVA   +L   ++  S L                 
Sbjct: 1322 QSHRDIDPGELTDLRSASVNNESFAQVAVRRNLQQHLQHCSGLLLGQIKEYAKYLSGSDD 1381

Query: 111  ---------MTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTE 160
                           D+VES+  A+ +D  + +   + + K      +   K       E
Sbjct: 1382 VPNPLQSTKGPKALGDLVESIAGAILIDTKLNLNEVWRIFKPLLSPIVTPDKLELPPLRE 1441

Query: 161  LQEWA 165
            L E  
Sbjct: 1442 LNELC 1446



 Score = 72.8 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 64/181 (35%), Gaps = 49/181 (27%)

Query: 21   SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
            SL+ +A+T  ++  S   S ERLE LGD +L   +S  LF  +    EG+LS R + +V 
Sbjct: 1072 SLILEAIT--TLRCSESFSMERLELLGDSVLKYAVSCHLFLKYPKKHEGQLSARRSWVVC 1129

Query: 81   AETCSQVARELDLASFIR------------------------------------------ 98
              T  ++  +  L  +IR                                          
Sbjct: 1130 NSTLHKLGTDRSLQGYIRDGAFDPRRWVAPGQRSIRPVPCSCGVDALEVPLDGKFQTEDT 1189

Query: 99   ---VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
               V     +      +   AD VE+LI A Y+ GG+  A   +   W    ++      
Sbjct: 1190 KIVVGKSCDRGHRWMGSKTIADCVEALIGAYYVGGGLNAALHLMK--WFGIDVELEPSLV 1247

Query: 156  D 156
            D
Sbjct: 1248 D 1248


>gi|126179439|ref|YP_001047404.1| ribonuclease III [Methanoculleus marisnigri JR1]
 gi|125862233|gb|ABN57422.1| RNAse III [Methanoculleus marisnigri JR1]
          Length = 154

 Score =  115 bits (288), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 74/143 (51%), Gaps = 7/143 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQ------ESYERLEFLGDRILGLLISTLLFNH 62
           LE+RI Y+F  + LL++AL H S S+  +      E  + L  LGD +L  ++  LL   
Sbjct: 5   LEERINYSFKQKDLLQRALLHRSRSNEERQKQKICEDQDALRTLGDAVLKTILCDLLMRS 64

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
                +GE++++ +++      +++ R  DL   I V    R    +   ++ A+ +E++
Sbjct: 65  GYE-TKGEITIKKSTIERRPFLAELGRRFDLQDKILVGEGARMQKHNEEPNVIAETLEAI 123

Query: 123 IAALYLDGGIEVAGTFVDKYWKQ 145
           I A+YLDGG E A   V  +++ 
Sbjct: 124 IGAMYLDGGYESAKKAVSGWYEP 146


>gi|330944921|ref|XP_003306459.1| hypothetical protein PTT_19601 [Pyrenophora teres f. teres 0-1]
 gi|311316023|gb|EFQ85435.1| hypothetical protein PTT_19601 [Pyrenophora teres f. teres 0-1]
          Length = 1448

 Score =  115 bits (288), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 65/284 (22%), Positives = 106/284 (37%), Gaps = 71/284 (25%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            +    +EK +GY F N++LL +ALTH +    +   SYER EFLGD +L  ++S  L+ H
Sbjct: 1159 MSLGLIEKLLGYKFNNKALLLEALTHVTFRGLNTNCSYERHEFLGDAVLDYIVSRKLYAH 1218

Query: 63   FDSAKEGELSVRFNSLVSAETCSQ------VAREL-------------DLASFIRVSSDL 103
                   ++     ++V+A   +       V  EL              L  F+R +S+ 
Sbjct: 1219 KPELSHRKMHGIRTAMVNASFLAYSMFETTVTEELTNKNTLEPEVHQRALWQFLRCTSNE 1278

Query: 104  ----------RKDVCSFM---------------------TSIQADVVESLIAALYLD--G 130
                      +                                +D+VES+I ALY+D  G
Sbjct: 1279 LVASRIIATQQHAEARNRIATGLKHDSRFPWQALSLTDPPKYLSDIVESVIGALYIDSHG 1338

Query: 131  GIEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY-KVTFRSGPDH 185
             I     FV++       +R L+ G      K  L   A      + +Y +VT  S  + 
Sbjct: 1339 SIATCEEFVNRLGIMSCLKRILRDGVDCLHPKERLGILA---VDKSVKYARVTSSSKSEG 1395

Query: 186  DPR-------FTVVVEISGLAPAQG--MDCSKRAAEQVAAAEVL 220
                      + V V+I       G  +   +  AE +AA + +
Sbjct: 1396 AREVGVLEEGYKVQVKIGEQDVG-GVVVGLKRLQAETIAAWKAI 1438



 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/142 (27%), Positives = 57/142 (40%), Gaps = 19/142 (13%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            +  +L  ALT SS ++     Y+RLEFLGD IL  + S  L        EG L+ +   L
Sbjct: 994  HLPVLVTALT-SSATNEGN-DYQRLEFLGDCILKFIASLHLMAANLQMPEGMLTGKKGKL 1051

Query: 79   VSAETCSQVARELDLASFIR-----------------VSSDLRKDVCSFMTSIQADVVES 121
            VS    ++      L  +I                  ++     +     + + ADV+ES
Sbjct: 1052 VSNGYLARATLAAGLDQYIFYKRFTGAKWKPRYISLVLAESTLPEKQEKSSKLIADVIES 1111

Query: 122  LIAALYLDGGIEVAGTFVDKYW 143
            LI A Y+ GG   A   V    
Sbjct: 1112 LIGASYIIGGFSKAFACVQTLL 1133


>gi|154276932|ref|XP_001539311.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150414384|gb|EDN09749.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 380

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 51/217 (23%), Positives = 95/217 (43%), Gaps = 22/217 (10%)

Query: 23  LEKA-LTHSSISHSY-----QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           L+ A  TH  + +       +++YER+E LGD  + ++ + L+++ F     G LS    
Sbjct: 139 LQTAMFTHEGVHNPNTASLPEKNYERMELLGDAYIEIIATRLVWDTFPRLPAGRLSQIRE 198

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL---DGGIE 133
            LV  ET ++      L   ++V  ++R  + ++ T I+ D+ E+ +AA+ L   D G++
Sbjct: 199 LLVKNETLAEYTSLYGLDQKLQVPPNIRDQIKTW-TKIKGDLFEAYVAAVILSNRDNGVQ 257

Query: 134 VAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD---PR 188
           +A  ++ + W  +   ++  K     K +L +    K      Y +  +    H      
Sbjct: 258 LAEDWLTQLWIPKLEQIEKDKPVLRYKEDLAKLVMDKGIKL-SY-LDEKQSICHSGGLQT 315

Query: 189 FTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVL 220
           F V V ++G          G   SK  A   AA + L
Sbjct: 316 FFVGVYLTGWGHKNECLGSGTGFSKVIAGNEAARKAL 352


>gi|40215441|gb|AAR82738.1| SD11113p [Drosophila melanogaster]
          Length = 1640

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 1/96 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  LEK +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1410 INHYYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1469

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
                  G L+   ++LV+  T + +     L  FI 
Sbjct: 1470 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1505



 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 26   ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85
            A+T SS +  +    ERLE LGD  L L  +  L + +    EG L+   + LVS     
Sbjct: 1176 AITASSAADVF--DMERLEILGDSFLKLSATLYLASKYSDWNEGTLTEVKSKLVSNRNLL 1233

Query: 86   QVARELDLASFI 97
                + D+   +
Sbjct: 1234 FCLIDADIPKTL 1245


>gi|225684610|gb|EEH22894.1| dicer [Paracoccidioides brasiliensis Pb03]
          Length = 1415

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 54/283 (19%), Positives = 98/283 (34%), Gaps = 72/283 (25%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            +  +E  +GY F  +  L +A TH S +     SY+RLEFLGD IL  +I   +FN   +
Sbjct: 1128 FRDIESLVGYIFNKKVFLAQAFTHPS-NPGSTMSYQRLEFLGDSILDHIIVDHIFNSPRN 1186

Query: 66   AKEGELSVRFNSLVSAETCSQVA--------------------------RELDLASFIRV 99
             +  ++ +   SL +A+  + +                           R++ L  ++R 
Sbjct: 1187 FQHVDMHLMRASLANADFLAFLCIGMTTEEERGEIVEASRNGTFTRMTTRKISLWQYMRH 1246

Query: 100  SSDLRKDVCSFMT--------------------------------SIQADVVESLIAALY 127
             +     V    T                                   +D++ES++ A++
Sbjct: 1247 GTSWELTVSQQQTVNQYQALKADITKALYESDTYPWALLSRLRAQKFFSDLIESVLGAIF 1306

Query: 128  LD--GGIEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK---VT 178
            +D  G ++    F+++     + +R L+        K  L E       +   Y+   V 
Sbjct: 1307 IDSHGSLDACAAFLERIGLMNFLRRILQDEIDIMHPKQRLGEMV---GQMQVRYETVHVV 1363

Query: 179  FRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVL 220
               G D    +T  V +      +     S    E  AA   L
Sbjct: 1364 EEEGGDALGHWTCKVFVDDECVFEEHDGVSLVEVETKAAEAAL 1406



 Score = 75.9 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 61/147 (41%), Gaps = 22/147 (14%)

Query: 17   FANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
            F + +L+  AL     +   +E  +Y+R+EFLGD IL    S  L        EG LS  
Sbjct: 957  FTDLNLVITAL----CAPDAREATNYQRIEFLGDSILKFHTSLQLLAANPIWHEGLLSNA 1012

Query: 75   FNSLVSAETCSQVARELDLASFIRV--------------SSDLRKDVCSF--MTSIQADV 118
             + +VS +  S  A E  L  FI +              +    +D+      T   ADV
Sbjct: 1013 KDEVVSNKRLSYAAIETGLDKFIFMDIFTGVKWRPRYNKAHVEEQDIPRREMSTKTLADV 1072

Query: 119  VESLIAALYLDGGIEVAGTFVDKYWKQ 145
            +E+L+ A  +DGG       +  +  +
Sbjct: 1073 IEALLGAATIDGGRTKVEKCLKIFLPE 1099


>gi|22026807|ref|NP_523778.2| Dicer-2 [Drosophila melanogaster]
 gi|21627058|gb|AAF57830.2| Dicer-2 [Drosophila melanogaster]
          Length = 1722

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 1/96 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  LEK +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1431 INHYYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1490

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
                  G L+   ++LV+  T + +     L  FI 
Sbjct: 1491 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1526



 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 26   ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85
            A+T SS +  +    ERLE LGD  L L  +  L + +    EG L+   + LVS     
Sbjct: 1197 AITASSAADVF--DMERLEILGDSFLKLSATLYLASKYSDWNEGTLTEVKSKLVSNRNLL 1254

Query: 86   QVARELDLASFI 97
                + D+   +
Sbjct: 1255 FCLIDADIPKTL 1266


>gi|16215719|dbj|BAB69959.1| double-strand-specific ribonuclease [Drosophila melanogaster]
          Length = 1722

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 1/96 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  LEK +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1431 INHYYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1490

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
                  G L+   ++LV+  T + +     L  FI 
Sbjct: 1491 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1526



 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 26   ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85
            A+T SS +  +    ERLE LGD  L L  +  L + +    EG L+   + LVS     
Sbjct: 1197 AITASSAADVF--DMERLEILGDSFLKLSATLYLASKYSDWNEGTLTEVKSKLVSNRNLL 1254

Query: 86   QVARELDLASFI 97
                + D+   +
Sbjct: 1255 FCLIDADIPKTL 1266


>gi|80979087|gb|ABB54746.1| Dicer-2 [Drosophila melanogaster]
          Length = 1715

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 1/96 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  LEK +GY F +R  L +ALTH S  ++    SY+ LEF+GD IL  LIS  +F +
Sbjct: 1424 INHYYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFEN 1483

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
                  G L+   ++LV+  T + +     L  FI 
Sbjct: 1484 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1519



 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 26   ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85
            A+T SS +  +    ERLE LGD  L L  +  L + +    EG L+   + LVS     
Sbjct: 1190 AITASSAADVF--DMERLEILGDSFLKLSATLYLASKYSDWNEGTLTEVKSKLVSNRNLL 1247

Query: 86   QVARELDLASFI 97
                + D+   +
Sbjct: 1248 FCLIDADIPKTL 1259


>gi|225429722|ref|XP_002280293.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1661

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 76/185 (41%), Gaps = 21/185 (11%)

Query: 2    SALRYSTLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLF 60
             A     LE +IGY F+ + LL +A+TH++         Y+RLEFLGD +L +LI+  L+
Sbjct: 1235 KANEIEILESKIGYEFSVKGLLLEAITHATEQELGVGYCYQRLEFLGDSVLDVLITWHLY 1294

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF---------- 110
                    GEL+   ++ V+ E+ +QVA   +L   ++  S L                 
Sbjct: 1295 QSHRDIDPGELTDLRSASVNNESFAQVAVRRNLQQHLQHCSGLLLGQIKEYAKYLSGSDD 1354

Query: 111  ---------MTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTE 160
                           D+VES+  A+ +D  + +   + + K      +   K       E
Sbjct: 1355 VPNPLQSTKGPKALGDLVESIAGAILIDTKLNLNEVWRIFKPLLSPIVTPDKLELPPLRE 1414

Query: 161  LQEWA 165
            L E  
Sbjct: 1415 LNELC 1419



 Score = 72.4 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 64/181 (35%), Gaps = 49/181 (27%)

Query: 21   SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
            SL+ +A+T  ++  S   S ERLE LGD +L   +S  LF  +    EG+LS R + +V 
Sbjct: 1045 SLILEAIT--TLRCSESFSMERLELLGDSVLKYAVSCHLFLKYPKKHEGQLSARRSWVVC 1102

Query: 81   AETCSQVARELDLASFIR------------------------------------------ 98
              T  ++  +  L  +IR                                          
Sbjct: 1103 NSTLHKLGTDRSLQGYIRDGAFDPRRWVAPGQRSIRPVPCSCGVDALEVPLDGKFQTEDT 1162

Query: 99   ---VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
               V     +      +   AD VE+LI A Y+ GG+  A   +   W    ++      
Sbjct: 1163 KIVVGKSCDRGHRWMGSKTIADCVEALIGAYYVGGGLNAALHLMK--WFGIDVELEPSLV 1220

Query: 156  D 156
            D
Sbjct: 1221 D 1221


>gi|259481091|tpe|CBF74306.1| TPA: nucleolar RNAse III, putative (AFU_orthologue; AFUA_5G04440)
           [Aspergillus nidulans FGSC A4]
          Length = 355

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 86/216 (39%), Gaps = 22/216 (10%)

Query: 23  LEKA-LTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
           LE+A  TH  ++   + +Y+RLE LGD  + L+ + L++N F     G +S     LV  
Sbjct: 127 LERAVFTHPGVAKDSRTTYDRLEILGDAYIELISTKLIWNKFQHIPSGRISQIRELLVKN 186

Query: 82  ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG--GIEVAGTFV 139
           ET ++ A +  +     V ++L      ++   + D+ E+ +AA+ L    G  VA T++
Sbjct: 187 ETLAEYATQYGIDKKASVPAELYNQPKRWI-KTKGDIFEAYVAAVILSHPDGYSVAETWL 245

Query: 140 DKYWKQRALKSGKFRRDAKTELQ--EWAHAK---FGVTPEYKVTFRSGPDHD---PRFTV 191
            + W  +            +  Q  E    K    G    Y +  +    H      F +
Sbjct: 246 SELWSPKLDSFEGSV----STFQAKEALAKKINGRGAKLRY-IDEKESVQHQGGTQTFFI 300

Query: 192 VVEI-----SGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            V       +      G   +K  A   AA + L+ 
Sbjct: 301 GVYFTGWGWNNKHLGSGQGSNKTIAGDRAAQQALEN 336


>gi|85083779|ref|XP_957185.1| hypothetical protein NCU01762 [Neurospora crassa OR74A]
 gi|7800875|emb|CAB91233.1| related to Ribonuclease III [Neurospora crassa]
 gi|28918272|gb|EAA27949.1| predicted protein [Neurospora crassa OR74A]
          Length = 352

 Score =  114 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 54/250 (21%), Positives = 89/250 (35%), Gaps = 51/250 (20%)

Query: 19  NRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
           + +L + ALTH   +++    SYERLE++GD  L L+ S+ ++  F +   G+ + R   
Sbjct: 67  DPALKKAALTHPGKANNDPVASYERLEWIGDAYLELIASSFIYQTFPTLPAGKSAQRREM 126

Query: 78  LVSAETCSQVARELDLASFIRVSSDLRKDVCS---------FMTSIQADVVESLIAALYL 128
           L+   T  + +    L     +  +                    I  D+ E+ +  + L
Sbjct: 127 LIRNTTLGEFSVYYGLDKMADI-PEEFNMEGRVGGTNASQKVRIKILGDLFEAYVGGVIL 185

Query: 129 ---DGGIEVAGTFVDKYWKQRALK-----------------SGKFRRDAKTELQEWAHAK 168
                GI+ A  ++   W     +                 +     D KT L E     
Sbjct: 186 SDPANGIQRASDWLKALWGPLMAEYIREEEKKARKPEQKQSASGQTLDPKTVL-EATIGA 244

Query: 169 FGVTPEYKVTFRSGPDHD--------PRFTVVVEISG-----LAPAQGMDCSKRAAEQVA 215
            GV  EYK      P  +        P F +   ++G     L    G   SK+ A Q A
Sbjct: 245 RGVKIEYKDL----PSKNLKDRGTKLPLFAIGCFMTGWGETNLQLGHGSALSKKEAGQKA 300

Query: 216 AAEVL--KRE 223
           A   L  K+ 
Sbjct: 301 AQMALDNKKL 310


>gi|198457361|ref|XP_001360634.2| GA19635 [Drosophila pseudoobscura pseudoobscura]
 gi|198135949|gb|EAL25209.2| GA19635 [Drosophila pseudoobscura pseudoobscura]
          Length = 1720

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 65/154 (42%), Gaps = 14/154 (9%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +S LE+ +GY F +R  L +ALTH S  ++     Y+ LEF+GD IL  LIS  +F +
Sbjct: 1438 INHSYLEQNLGYKFRDRGYLLQALTHPSFPTNRLTGCYQELEFIGDAILDFLISAYIFEN 1497

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
             +  + GEL+   ++LV+  T   +     L  FI   + L  +  S     Q       
Sbjct: 1498 NNKLRPGELTDLRSALVNNTTLGCICVRHKLHLFILAENALLSETISKFVKFQESQGH-- 1555

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD 156
                            V    ++R ++      D
Sbjct: 1556 -----------RVTNHVRFLLEERDVQPVILDLD 1578



 Score = 53.9 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 28/62 (45%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
              ER E LGD  L +  S  L + +    EG L+   + LVS +      RE D+ S I 
Sbjct: 1216 DMERAELLGDSFLKMSASLYLASRYPDWNEGTLTQVKSRLVSNKNLMYCLRETDIPSRIS 1275

Query: 99   VS 100
             S
Sbjct: 1276 CS 1277


>gi|297836192|ref|XP_002885978.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297331818|gb|EFH62237.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/232 (22%), Positives = 93/232 (40%), Gaps = 39/232 (16%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLFN 61
                +EK + Y F +++LL++A+T +S S++   S  +ERLEFLGD +L ++ S  +  
Sbjct: 2   ESVEAVEKILNYTFTDKNLLKEAITKTSGSNTESSSLLFERLEFLGDSVLLVVFSNHIEI 61

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI----------RVSSDLRKD----- 106
            + +    +L+    + VS ET ++VA   +L  FI          ++S  L        
Sbjct: 62  TYPNLHPNDLNDVRIANVSNETFARVAVNNNLHQFIIFDAPNPLLHKMSHVLTNKWCHVL 121

Query: 107 -------------------VCSFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQR 146
                                       AD+VE++  A+Y+D   +V   + + +   + 
Sbjct: 122 KIKDFSEAVKEEVYPAPCGGLVKAPKFLADLVEAIAGAVYIDVDFDVQRVWEIFRVLVEP 181

Query: 147 ALKSGKFRRDA-KTELQEW-AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
                  R+   +T L+      K G   E       GP  + +F   V I 
Sbjct: 182 ICTLDDLRKQPERTYLRLLGLGDKLGKRIEVFFEEEGGPKIEQKFVCSVNIE 233



 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/239 (20%), Positives = 97/239 (40%), Gaps = 24/239 (10%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              +EK + Y+F N++LL +ALTH+S   S    ++RL F+G   + L  +  ++  +  
Sbjct: 373 VKAVEKILNYSFTNKNLLREALTHNS---SNLLPFQRLMFVGKAGISLAFANHMYLTYPK 429

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIR----------------VSSDLRKDVCS 109
               EL++  N+    +  ++VA +  +  F++                +  +   D   
Sbjct: 430 LGPKELTMLQNANTCNDRYARVAVKRGIYQFLKCNVRTSKRQIIEFIKMLGKEDDPDPFR 489

Query: 110 FM--TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTELQEWAH 166
            +    I  D+VES+  A+Y+D   +V   + + +   +        RR     L  +  
Sbjct: 490 SVKAPKILTDLVESVAGAVYIDVNRDVKRLWEILRGLFEPIYTLDDIRRKPHPLLTLFCL 549

Query: 167 A-KFGVTPEYKVTFRSGPDHDPRFTV-VVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             K G   E++             T+  V +     A G  C++ A++  AA   L++ 
Sbjct: 550 GYKHGKRIEFRYRECEKSSGMNEATITEVYVDDKFIACGKSCNRAASKMRAATMALEKL 608


>gi|221130589|ref|XP_002165718.1| PREDICTED: similar to dicer 1 [Hydra magnipapillata]
          Length = 1615

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 67/166 (40%), Gaps = 33/166 (19%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               E  I Y F N+S L +A TH S  S+S    Y++ EFLGD IL  LI+  + ++  
Sbjct: 784 LQKFEDHISYRFLNKSHLIQAFTHLSYLSNSVTGCYQQYEFLGDAILDFLITLHIQSNTQ 843

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV----------------- 107
           +   G+L+   +++V+  T   +A +     +I  SS+                      
Sbjct: 844 NLSPGQLTYFRSAVVNNNTFGLLAIKHSFYKYIYSSSNELFSSYNSFIEIVKDDHGLKDE 903

Query: 108 ---------------CSFMTSIQADVVESLIAALYLDGGIEVAGTF 138
                                +  D+ ES+  A++LD G+++   +
Sbjct: 904 YFESPFVICPTGSEEGYQAPKVLGDLFESVAGAIFLDSGLDLVTVW 949



 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 45/183 (24%), Positives = 67/183 (36%), Gaps = 36/183 (19%)

Query: 2   SALRYSTLEKRIGYAFAN---RSLLE--KALTHSSISHSYQESYERLEFLGDRILGLLIS 56
           S L    L +   Y   N    S+L+  +ALT    S  +    ERLE LGD  L   +S
Sbjct: 564 SVLDLENLLQLKNYVTENVKSPSVLKIFEALTTRQASMPF--DLERLEVLGDSFLKQAVS 621

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM----- 111
             +F    S  EG+L++R    +S E   +V + + + + I  S    K   S       
Sbjct: 622 IFVFFQNPSFHEGKLTIRRKKCISNENLCKVGKSVGIQNIICNSQFGTKSSNSENRNPWT 681

Query: 112 ------------------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA 147
                                       AD VE+LI   +  GG+ +A  F+  +     
Sbjct: 682 VWLPPGYLRAELDDMKQYTYQNVQPKSIADCVEALIGVYFEVGGVNLALCFMQNFLNIPV 741

Query: 148 LKS 150
           L S
Sbjct: 742 LHS 744


>gi|296417821|ref|XP_002838549.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634492|emb|CAZ82740.1| unnamed protein product [Tuber melanosporum]
          Length = 1490

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/288 (18%), Positives = 97/288 (33%), Gaps = 80/288 (27%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHFD 64
               LE  IGY F +++LL +A+TH S        SY+R+EFLGD +L +++   LF    
Sbjct: 1105 LKGLESLIGYHFTHKALLLEAITHPSWESDMTSLSYQRMEFLGDALLDMVVVNHLFFSPR 1164

Query: 65   SAKEGELSVRFNSLVSAETCSQV---------------------------ARELDLASFI 97
            +    ++ +  +S+V+    + +                           +R+++L  FI
Sbjct: 1165 NLSHIDMHLYKSSVVNGNFLAYLSLRCAVDAKYYGISQRAQSTEVEIVNKSRKVELWKFI 1224

Query: 98   R---------------------------------------VSSDLRKDVCSFMTSIQADV 118
            R                                       +S               +DV
Sbjct: 1225 RHQHQQIQHAQKICSKRYEEDLRDSVQAALDYGKDYPWTELSPLESDKSGRN--KFLSDV 1282

Query: 119  VESLIAALYLDGG--IEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVT 172
            VE++I A+++D G   E   +  ++       +R +           +L E   A    T
Sbjct: 1283 VEAIIGAVFIDSGGDFETVQSLAERLGILKVLKRLVADHVDVTHPVKKLGEAVAANGQGT 1342

Query: 173  PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             +Y  +   G      ++  V ++          S+  A   AA   L
Sbjct: 1343 VQYVQSVEGGG-----YSCAVMVNEEKLLSVRAASRSEARTKAAELAL 1385



 Score = 84.0 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/175 (24%), Positives = 68/175 (38%), Gaps = 33/175 (18%)

Query: 7    STLEKRIGYA--FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            + LE+ + +   F +   +  AL+ SS        Y+R EFLGD +L  L S  L +   
Sbjct: 919  ADLERTLLHPVGFNSIPKMVTALSASSA--RESTDYQRFEFLGDSVLKFLTSVNLLDEHP 976

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR--------------VSSDLRKDVCSF 110
               EG L+ +   +V+    ++ A +  LA +I               +S +        
Sbjct: 977  FWHEGYLTRKKEQMVANSRLARAAIDNRLAKWIITDIFTGSKWRPRYVISEEEEFPEKKR 1036

Query: 111  M------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKT 159
                   T I ADVVE+LI A YL+G    A   +  +             + K+
Sbjct: 1037 KGPKQLSTKILADVVEALIGAAYLEGNYPKALKVIRAF---------GLNINWKS 1082


>gi|195150547|ref|XP_002016212.1| GL10619 [Drosophila persimilis]
 gi|194110059|gb|EDW32102.1| GL10619 [Drosophila persimilis]
          Length = 1720

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 14/154 (9%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +S LE+ +GY F +R  L +ALTH S  ++     Y+ LEF+GD IL  LIS  +F +
Sbjct: 1438 INHSYLEQNLGYKFRDRGYLLQALTHPSFPTNRLTGCYQELEFIGDAILDFLISAYIFEN 1497

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
                + GEL+   ++LV+  T   +     L  FI   + L  +  S     Q       
Sbjct: 1498 NTKLRPGELTDLRSALVNNTTLGCICVRHKLHLFILAENALLSETISKFVKFQESQGH-- 1555

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD 156
                            V    ++R ++      D
Sbjct: 1556 -----------RVTNHVRFLLEERDVQPVILDLD 1578



 Score = 53.9 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 28/62 (45%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
              ER E LGD  L +  S  L + +    EG L+   + LVS +      RE D+ S I 
Sbjct: 1216 DMERAELLGDSFLKMSASLYLASRYPDWNEGTLTQVKSRLVSNKNLMYCLRETDIPSRIS 1275

Query: 99   VS 100
             S
Sbjct: 1276 CS 1277



 Score = 36.2 bits (83), Expect = 3.8,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 36/109 (33%), Gaps = 23/109 (21%)

Query: 110  FMTSIQADVVESLIAALYLDG-GIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHA 167
             +     DV+E+LIAA+Y+D   ++     +   ++    + S         +L E    
Sbjct: 1605 DVPKALGDVLEALIAAVYMDCRDLQTTWQMIYHLFEPELKEFSQNIPISPIRQLHE---- 1660

Query: 168  KFGVTPEYKVTFRSGPD-HDP-------RFTVVVEISGLAPAQGMDCSK 208
                 P Y      GP   D        +FT    +       G   +K
Sbjct: 1661 HKLANPVY------GPPLVDKDVVMMYCQFTC---MEKTIRVTGFGSNK 1700


>gi|222629185|gb|EEE61317.1| hypothetical protein OsJ_15421 [Oryza sativa Japonica Group]
          Length = 1632

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 50/98 (51%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            M     + LE+ IGY F ++ LL +A  H S S      Y++ EFLGD +L  +I++ L+
Sbjct: 1177 MDYTDIAGLEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQKTEFLGDAVLEYVITSYLY 1236

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
            + +   K G+++   +  V  ++ +  A E  +   + 
Sbjct: 1237 STYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLI 1274



 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 19/123 (15%)

Query: 35   SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLA 94
                  +RLEFLGD +L  +I++ L++ +   K G+++   +  V  ++ +  A E  + 
Sbjct: 1302 EEPACPKRLEFLGDAVLEYVITSYLYSTYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIH 1361

Query: 95   SFIR---------VSSDLRKDVCSFM----------TSIQADVVESLIAALYLDGGIEVA 135
              +          +S        S                 D+VES I A+ LD G  + 
Sbjct: 1362 KHLIKDSNHLTSAISKFEMYVKLSNSEKDLLEEPACPKALGDIVESCIGAVLLDSGFNLN 1421

Query: 136  GTF 138
              +
Sbjct: 1422 YVW 1424



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 48/140 (34%), Gaps = 40/140 (28%)

Query: 41   ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
            ER E LGD  L  ++    F  ++   EG+L+ R + +V+     +++    L  +IR  
Sbjct: 1011 ERFEVLGDAFLKYVVGRHKFITYEGLDEGQLTRRRSDVVNNSHLYELSIRKKLQVYIRDQ 1070

Query: 101  SDL----------------------------------------RKDVCSFMTSIQADVVE 120
                                                        +        + ADVVE
Sbjct: 1071 QFEPTQFFAPGRPCKVVCNTDVEVRLHQMDIHPDNRENCNLRCTRSHHWLHRKVIADVVE 1130

Query: 121  SLIAALYLDGGIEVAGTFVD 140
            SLI A  ++GG + A  F+ 
Sbjct: 1131 SLIGAFLVEGGFKAAFAFLH 1150



 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 10/78 (12%)

Query: 157  AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VVVEISG----LAPAQGMDC-SKR 209
            A++ L E   A +   PE+K+    GP H  +FT  VVVEI G    L          K+
Sbjct: 1545 ARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKGASATLLECHSDGKLQKK 1604

Query: 210  AAEQVAAAEV---LKREG 224
            AA++ AA      LK+ G
Sbjct: 1605 AAQEHAAQGALWCLKQLG 1622


>gi|268325168|emb|CBH38756.1| conserved hypothetical protein, containing RNase3 and AIR
           carboxylase domain [uncultured archaeon]
 gi|268326276|emb|CBH39864.1| conserved hypothetical protein, containing RNase3 and AIR
           carboxylase domain [uncultured archaeon]
          Length = 421

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/143 (25%), Positives = 71/143 (49%), Gaps = 7/143 (4%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSIS------HSYQESYERLEFLGDRILGLLISTLLFN 61
           T+E+ I Y+F ++++L +ALT  + +      +   E  E    LGD +L  ++  LL  
Sbjct: 277 TIEENIRYSFLDKNILNRALTRKAYALEQRQRNQACEDQEIFRTLGDAVLKAVLVDLLIK 336

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
                +E E++ +   L   E+ +++ REL +   I +    +K   +    + A+  E+
Sbjct: 337 SGCKTRE-EITRKKIELEREESLAKIGRELGIGESIMLGVGEKKQRANEEPYVLAETFEA 395

Query: 122 LIAALYLDGGIEVAGTFVDKYWK 144
           +I A+YLDG  ++A   +   +K
Sbjct: 396 VIGAIYLDGCYDIAKKIITNLFK 418


>gi|302901921|ref|XP_003048541.1| hypothetical protein NECHADRAFT_95770 [Nectria haematococca mpVI
            77-13-4]
 gi|256729474|gb|EEU42828.1| hypothetical protein NECHADRAFT_95770 [Nectria haematococca mpVI
            77-13-4]
          Length = 1381

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 67/274 (24%), Positives = 108/274 (39%), Gaps = 70/274 (25%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               LE+ IGY+F  +SLL +A+TH S +  ++Q SYE+LEFLGD +L  +I T +FN   
Sbjct: 1092 LEPLEELIGYSFRKKSLLIEAVTHGSYAGDTHQRSYEQLEFLGDAVLDYIIVTKVFNVKP 1151

Query: 65   SAKEGELSVRFNSLVSAETCSQVARE----------------------LDLASFIR---- 98
                 +L +   ++V+ E  + V  E                      L L  F+R    
Sbjct: 1152 PLPHSDLHLIKTAMVNGEFLAFVNLEHRLRRVETDVNADGVTEDTIKTLALWQFMRYTSP 1211

Query: 99   -VSSDLRKDVCSFMT--------------------------SIQADVVESLIAALYLDGG 131
             + ++  + V  F T                             +D+ E+LI A+++D G
Sbjct: 1212 AIGNEQVRTVERFETLRREIVDAIENGTHYPWTLLARFQPKKFYSDLFEALIGAVWVDSG 1271

Query: 132  -IEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
              EV      ++    + +R ++     +  K EL   A  K     EY  T   G    
Sbjct: 1272 STEVCEGVFHRFGILPYLERIIRDKVHIKHPKEELSALAVEKK---VEYNYTVLDGV--Q 1326

Query: 187  PRFTVVVEISGLAPAQGMDC-SK-----RAAEQV 214
            P +   +++     A      +K     RAAEQ 
Sbjct: 1327 PEYVCRLKVGDRLMADVRGGLNKEEIMTRAAEQA 1360



 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 56/152 (36%), Gaps = 25/152 (16%)

Query: 18   ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
             +  L+ +A+  SS S      YERLEFLGD IL        +       EG L    + 
Sbjct: 916  NDLQLVLEAI--SSRSAHEPVDYERLEFLGDSILKYCTVIQAYAEHPLWPEGLLVPFKDQ 973

Query: 78   LVSAETCSQVARELDLASFIRVS--SDLRKDVCSFMT---------------------SI 114
            LVS +   +   E  L+ FI     +        +                         
Sbjct: 974  LVSNKRLHRACLESGLSKFILSKAFTGRSYSGKKWKPLYLDDFLPEESVEPLDRITGHKN 1033

Query: 115  QADVVESLIAALYLDGGIEVAGTFVDKYWKQR 146
             ADVVE+LI A + DGG++ A   +  +   +
Sbjct: 1034 LADVVEALIGASFQDGGMDKALKCISVFLGDK 1065


>gi|80979131|gb|ABB54768.1| Dicer-2 [Drosophila santomea]
          Length = 1719

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 1/96 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  LE  +GY F +R  L +ALTH S  ++     Y+ LEF+GD IL  LIS  +F +
Sbjct: 1428 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1487

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
                  G L+   ++LV+  T + +     L  FI 
Sbjct: 1488 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1523



 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 26   ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85
            A+T SS +  Y    ERLE LGD  L L  +  L N +    EG L+   + LVS     
Sbjct: 1194 AITSSSTADVY--DMERLEILGDSFLKLSATLYLANKYSDWNEGTLTQVKSKLVSNRNLL 1251

Query: 86   QVARELDLASFI 97
                + D+   I
Sbjct: 1252 YCLSDTDIPKXI 1263


>gi|322700444|gb|EFY92199.1| Dicer-like protein 2 [Metarhizium acridum CQMa 102]
          Length = 1441

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 59/283 (20%), Positives = 105/283 (37%), Gaps = 64/283 (22%)

Query: 3    ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFN 61
                  LE  +GY F  +SLL +A+TH S    Y + SYE LEF+GD IL  +I   ++ 
Sbjct: 1151 PAELKPLEHLVGYQFKKKSLLIEAMTHQSCMFDYNRRSYEHLEFIGDAILDFIIVRKMYT 1210

Query: 62   HFDSAKEGELSVRFNSLVSAETCSQVARE-----------------------LDLASFIR 98
                    ++     ++V+ +  + ++ +                       L L +F+R
Sbjct: 1211 AGPLLAPYQMHSLKTAMVNGDFLAFLSLDHQMRRTETAVTSSLQIIDKETTPLALWTFMR 1270

Query: 99   VSSD----------------------LRKDVCSF---------MTSIQADVVESLIAALY 127
             SS+                        +    +              +D+ ESL+ A++
Sbjct: 1271 HSSEAIGIEQAATLKRYEALRGEILAALRQGSRYPWALLARLQAKKFYSDIFESLLGAVW 1330

Query: 128  LDGG-IEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
            +D G IE+    + K+       R LK     +  K  L + A  +   T  Y V  +  
Sbjct: 1331 VDSGSIELCECMLQKFGVLSILDRLLKDRVAVQHPKEVLGKMAVTQ---TVTYDVDVQEA 1387

Query: 183  PDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVLKREG 224
            PD +  FT  V +      + +   ++   +  AA E ++  G
Sbjct: 1388 PDGEKAFTCRVLMGEKVVTEVVDGVTREEVKTKAAEEAIRILG 1430



 Score = 92.4 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/156 (28%), Positives = 67/156 (42%), Gaps = 21/156 (13%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
            +TL +RI     +  L+ +A++  S +     +YERLEFLGD IL    +  +       
Sbjct: 976  TTLLERINIT--DLGLVREAISSRSAAEPV--NYERLEFLGDSILKYCTAIQVSAIHPEW 1031

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDVCS 109
             EG LS   + LV     S+ A ++ LA FI                    +  +     
Sbjct: 1032 PEGYLSFFKDRLVGNSRLSRAAIDVGLAKFILTKSFTGQKWRPLYLDNYTGNPGKVSPRK 1091

Query: 110  FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145
              T   ADVVE+LI A Y++GGI  A   +  +  +
Sbjct: 1092 ISTKTLADVVEALIGASYINGGITKAQNCISLFVNE 1127


>gi|80979133|gb|ABB54769.1| Dicer-2 [Drosophila teissieri]
          Length = 1719

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 1/96 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  LE  +GY F +R  L +ALTH S  ++     Y+ LEF+GD IL  LIS  +F +
Sbjct: 1428 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1487

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
                  G L+   ++LV+  T + +     L  FI 
Sbjct: 1488 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1523



 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 26   ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85
            A+T SS +  +    ERLE LGD  L L  +  L N +    EG L+   + LVS     
Sbjct: 1194 AITSSSTADVF--DMERLEILGDSFLKLSATLYLANKYSDWNEGTLTQVKSKLVSNRNLL 1251

Query: 86   QVARELDLASFI 97
                + D+   I
Sbjct: 1252 YCLSDTDIPKKI 1263


>gi|80979119|gb|ABB54762.1| Dicer-2 [Drosophila yakuba]
          Length = 1719

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 1/96 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  LE  +GY F +R  L +ALTH S  ++     Y+ LEF+GD IL  LIS  +F +
Sbjct: 1428 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1487

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
                  G L+   ++LV+  T + +     L  FI 
Sbjct: 1488 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1523



 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 26   ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85
            A+T SS +  Y    ERLE LGD  L L  +  L N +    EG L+   + LVS     
Sbjct: 1194 AITSSSTADVY--DMERLEILGDSFLKLSATLYLANKYSDWNEGTLTQVKSKLVSNRNLL 1251

Query: 86   QVARELDLASFI 97
                + D+   I
Sbjct: 1252 YCLSDTDIPKRI 1263


>gi|195487840|ref|XP_002092062.1| Dcr-2 [Drosophila yakuba]
 gi|194178163|gb|EDW91774.1| Dcr-2 [Drosophila yakuba]
          Length = 1730

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 1/96 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  LE  +GY F +R  L +ALTH S  ++     Y+ LEF+GD IL  LIS  +F +
Sbjct: 1439 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1498

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
                  G L+   ++LV+  T + +     L  FI 
Sbjct: 1499 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1534



 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 26   ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85
            A+T SS +  Y    ERLE LGD  L L  +  L N +    EG L+   + LVS     
Sbjct: 1205 AITSSSTADVY--DMERLEILGDSFLKLSATLYLANKYSDWNEGTLTQVKSKLVSNRNLL 1262

Query: 86   QVARELDLASFI 97
                + D+   I
Sbjct: 1263 YCLSDTDIPKRI 1274


>gi|161579129|gb|ABX72052.1| Dicer-1 protein [Tribolium castaneum]
          Length = 157

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 1/94 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           Y   E+ IGY F +RS L +ALTH+S S ++  + Y+RLEFLGD +L  LI+  L+    
Sbjct: 63  YDQFERHIGYKFRDRSYLLQALTHASFSPNTLTDCYQRLEFLGDAVLDYLITRHLYEDTR 122

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
               G L+   ++LV+    + +A       + R
Sbjct: 123 MHSPGALTDLRSALVNNTIFASLAVRNGFHRYFR 156


>gi|80979117|gb|ABB54761.1| Dicer-2 [Drosophila yakuba]
          Length = 1719

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 1/96 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  LE  +GY F +R  L +ALTH S  ++     Y+ LEF+GD IL  LIS  +F +
Sbjct: 1428 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1487

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
                  G L+   ++LV+  T + +     L  FI 
Sbjct: 1488 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1523



 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 26   ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85
            A+T SS +  Y    ERLE LGD  L L  +  L N +    EG L+   + LVS     
Sbjct: 1194 AITSSSTADVY--DMERLEILGDSFLKLSATLYLANKYSDWNEGTLTQVKSKLVSNRNLL 1251

Query: 86   QVARELDLASFI 97
                + D+   I
Sbjct: 1252 YCLSDTDIPKRI 1263


>gi|80979129|gb|ABB54767.1| Dicer-2 [Drosophila yakuba]
          Length = 1719

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 1/96 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  LE  +GY F +R  L +ALTH S  ++     Y+ LEF+GD IL  LIS  +F +
Sbjct: 1428 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1487

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
                  G L+   ++LV+  T + +     L  FI 
Sbjct: 1488 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1523



 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 26   ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85
            A+T SS +  Y    ERLE LGD  L L  +  L N +    EG L+   + LVS     
Sbjct: 1194 AITSSSTADVY--DMERLEILGDSFLKLSATLYLANKYSDWNEGTLTQVKSKLVSNRNLL 1251

Query: 86   QVARELDLASFI 97
                + D+   I
Sbjct: 1252 YCLSDTDIPKRI 1263


>gi|80979121|gb|ABB54763.1| Dicer-2 [Drosophila yakuba]
          Length = 1719

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 1/96 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  LE  +GY F +R  L +ALTH S  ++     Y+ LEF+GD IL  LIS  +F +
Sbjct: 1428 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1487

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
                  G L+   ++LV+  T + +     L  FI 
Sbjct: 1488 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1523



 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 26   ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85
            A+T SS +  Y    ERLE LGD  L L  +  L N +    EG L+   + LVS     
Sbjct: 1194 AITSSSTADVY--DMERLEILGDSFLKLSATLYLANKYSDWNEGTLTQVKSKLVSNRNLL 1251

Query: 86   QVARELDLASFI 97
                + D+   I
Sbjct: 1252 YCLSDTDIPKRI 1263


>gi|80979123|gb|ABB54764.1| Dicer-2 [Drosophila yakuba]
          Length = 1719

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 1/96 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  LE  +GY F +R  L +ALTH S  ++     Y+ LEF+GD IL  LIS  +F +
Sbjct: 1428 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1487

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
                  G L+   ++LV+  T + +     L  FI 
Sbjct: 1488 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1523



 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 26   ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85
            A+T SS +  Y    ERLE LGD  L L  +  L N +    EG L+   + LVS     
Sbjct: 1194 AITSSSTADVY--DMERLEILGDSFLKLSATLYLANKYSDWNEGTLTQVKSKLVSNRNLL 1251

Query: 86   QVARELDLASFI 97
                + D+   I
Sbjct: 1252 YCLSDTDIPKRI 1263



 Score = 35.8 bits (82), Expect = 4.9,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 102  DLRKDVCSFMTSIQADVVESLIAALYLDG-GIEVAGTFVDKYWKQRALK-SGKFRRDAKT 159
            B        +     DV+E+LIAA+YLD   ++     +   +K    + +     +A  
Sbjct: 1596 BFNMSTNVDVPKALGDVLEALIAAIYLDCRDLQRTWEVIFNLFKPELEEFTRNVPINAIR 1655

Query: 160  ELQEWAHAK 168
            +L E  HA 
Sbjct: 1656 QLTEHKHAN 1664


>gi|80979127|gb|ABB54766.1| Dicer-2 [Drosophila yakuba]
          Length = 1719

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 1/96 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  LE  +GY F +R  L +ALTH S  ++     Y+ LEF+GD IL  LIS  +F +
Sbjct: 1428 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1487

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
                  G L+   ++LV+  T + +     L  FI 
Sbjct: 1488 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1523



 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 26   ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85
            A+T SS +  Y    ERLE LGD  L L  +  L N +    EG L+   + LVS     
Sbjct: 1194 AITSSSTADVY--DMERLEILGDSFLKLSATLYLANKYSDWNEGTLTQVKSKLVSNRNLL 1251

Query: 86   QVARELDLASFI 97
                + D+   I
Sbjct: 1252 YCLSDTDIPKRI 1263


>gi|80979125|gb|ABB54765.1| Dicer-2 [Drosophila yakuba]
          Length = 1719

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 1/96 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  LE  +GY F +R  L +ALTH S  ++     Y+ LEF+GD IL  LIS  +F +
Sbjct: 1428 INHHHLENNLGYTFKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFEN 1487

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
                  G L+   ++LV+  T + +     L  FI 
Sbjct: 1488 NTKMNPGALTDLRSALVNNTTLACICVRHRLHFFIL 1523



 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 26   ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85
            A+T SS +  Y    ERLE LGD  L L  +  L N +    EG L+   + LVS     
Sbjct: 1194 AITSSSTADVY--DMERLEILGDSFLKLSATLYLANKYSDWNEGTLTQVKSKLVSNRNLL 1251

Query: 86   QVARELDLASFI 97
                + D+   I
Sbjct: 1252 YCLSDTDIPKRI 1263


>gi|299747526|ref|XP_001837094.2| hypothetical protein CC1G_00230 [Coprinopsis cinerea okayama7#130]
 gi|298407559|gb|EAU84711.2| hypothetical protein CC1G_00230 [Coprinopsis cinerea okayama7#130]
          Length = 1499

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 54/256 (21%), Positives = 92/256 (35%), Gaps = 43/256 (16%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
                +E  IG+ F    LL + LTH+S+  S   +YERLEF+GD IL  ++   +F+   
Sbjct: 1209 SIEAVEGIIGHRFQQPHLLAQILTHTSVHGSKVLTYERLEFIGDAILDFMVIRHIFDRER 1268

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS----------------------- 101
            +   G L++   ++V+  T + V     +   +   S                       
Sbjct: 1269 TLSPGGLTMLKGAMVANSTLATVCILSGIYKHLVFGSYQLSSAIEDYAEAINERADKEYA 1328

Query: 102  ---DLRKDVCSFMTSI-----QADVVESLIAALYLDGGI-----EVAGTFVDKYWKQRAL 148
                  +    F   I      +DV+ES+I ALY+         E     V + +  + +
Sbjct: 1329 LAEQENRMPGQFWPDIEPPKALSDVIESIIGALYISDNFCPVGTEAFFDKVLRPFFDKHI 1388

Query: 149  KSGKFRRDA-KTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDC 206
                      KT L E+  A        ++    GP     + +  + +     A   D 
Sbjct: 1389 SLRTLTHHPTKT-LFEYIQAHGCQ----QLKLSKGPQQKGGKMSCEILVHETVCASASDV 1443

Query: 207  SKRAAEQVAAAEVLKR 222
            S   A + A+   L R
Sbjct: 1444 SLSVAAREASTRALDR 1459



 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 7/107 (6%)

Query: 11   KRIGYAF----ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
            K +   F     +  LL  A T  ++S   + +YERLE LGD  L  L S ++F    + 
Sbjct: 958  KELNMQFFDNAIDEELLYMATT--TVSAEMEHNYERLELLGDAFLKYLASVVVFVMNPTQ 1015

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
             EG L V    L+S +     A ++ L ++I  S            S
Sbjct: 1016 NEGSLHVARQRLISNKALLACATQVGLPAYI-CSKPFLLRGWRPWPS 1061


>gi|312213955|emb|CBX93957.1| similar to dicer-like protein 1 [Leptosphaeria maculans]
          Length = 1588

 Score =  112 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 85/249 (34%), Gaps = 43/249 (17%)

Query: 15   YAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            Y F    L+  A TH S ++   +  +Y+RLEFLGD +L +     L+  +       L+
Sbjct: 1291 YHFKYPRLVRSAFTHPSYAYMFEHIPNYQRLEFLGDSLLDMAFIMHLYYKYPDKDPQWLT 1350

Query: 73   VRFNSLVSAETCSQVARELDLASFIR----------------VSSDLRKDVC-------- 108
                 +VS +    V  +L     ++                +    R+           
Sbjct: 1351 EHKTPMVSNKFLGAVCVKLGWHRHLKSNTAILSTQIRDYVLEIDEAEREANGAVDYWVNV 1410

Query: 109  SFMTSIQADVVESLIAALYLDGGIE--VAGTFVDKYWKQRALKS------GKFRRDAKTE 160
                   ADV+E+ +AAL++D   +  V  +F D++ K                    T 
Sbjct: 1411 HEPPKCLADVIEAYVAALFVDSQFDFSVVQSFFDRHLKPFFADMTLDAYENFASNHPTTR 1470

Query: 161  LQEWAHAKFGVTPEYKV----TFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214
            L       FG + ++++    T    P        +V I G       G     R A   
Sbjct: 1471 LSRLLSISFGCS-DWRMGARETDTVIPGKGKAIAAMVMIHGKVWFHSLGQGG--RYARLR 1527

Query: 215  AAAEVLKRE 223
            A+   L+R 
Sbjct: 1528 ASHAALERL 1536



 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 50/160 (31%), Gaps = 49/160 (30%)

Query: 20   RSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             +L  +ALT  S                   +YERLEFLGD  L +  S  +F       
Sbjct: 1066 PALALEALTKDSENTDEHEEEKINFKSGMGPNYERLEFLGDCFLKMATSLSVFVQQPEEN 1125

Query: 68   EGELSVRFNSLVSAETCSQVA-------------RELDLASFIRV--------------- 99
            E E  VR   ++  +   + A               L+L  ++R                
Sbjct: 1126 EFEYHVRRMLMLCNQNLMETAIGVKKVARPDGTEINLELPKYVRTEAFSRRTWYPEALKL 1185

Query: 100  --SSDLRKD-------VCSFMTSIQADVVESLIAALYLDG 130
                 + K          +      ADV E+ I A +++ 
Sbjct: 1186 IRGKGINKSEDDWLKLRHNLGDKSVADVCEAFIGAAFMEH 1225


>gi|225554674|gb|EEH02970.1| RNase3 domain-containing protein [Ajellomyces capsulatus G186AR]
          Length = 380

 Score =  112 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 51/218 (23%), Positives = 93/218 (42%), Gaps = 22/218 (10%)

Query: 23  LEKA-LTHSSISHSY-----QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           L+ A  TH  + +       +++YER+E LGD  + ++ + L+++ F     G LS    
Sbjct: 139 LQTAMFTHEGVHNPNTAPLPEKNYERMELLGDAYIEIIATRLVWDTFPRLPAGRLSQIRE 198

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG---GIE 133
            LV  ET ++      L   ++V  ++R D     T I+ D+ E+ +AA+ L     G++
Sbjct: 199 LLVKNETLAEYTSLYGLDQKLQVPPNIR-DQAKTWTKIKGDLFEAYVAAVILSNREYGVQ 257

Query: 134 VAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD---PR 188
           +A  ++ + W  +   ++  K     K +L +    K      Y +  +    H      
Sbjct: 258 LAEDWLTQLWIPKLEQIEKDKPMLRYKEDLAKLVMDKGIKL-SY-LDEKQSICHSGGLQT 315

Query: 189 FTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLK 221
           F V V ++G          G   SK  A   AA + L+
Sbjct: 316 FFVGVYLTGWGHKNECLGSGTGFSKVIAGNEAARKALE 353


>gi|149234499|ref|XP_001523129.1| hypothetical protein LELG_05675 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146453238|gb|EDK47494.1| hypothetical protein LELG_05675 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 729

 Score =  112 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 93/229 (40%), Gaps = 34/229 (14%)

Query: 18  ANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            + +L EK   H S  ++           +  ERLEF GD IL  LI+ +++N F +  E
Sbjct: 357 RDSALYEKVFVHKSTVNNRTYLGSDALIHKHNERLEFYGDSILNNLITIIIYNKFPNNTE 416

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIR-------VSSDLRKDVCSFMTSIQADVVES 121
           GELS    ++++     ++A +      +R       ++   +         I ADV E+
Sbjct: 417 GELSKIRAAMINNRVLKEIAVDYGFDKKLRTRIDQDVLNLGEQ--------KIYADVFEA 468

Query: 122 LIAALYLDGGIEV--AGTFVDKYWKQRALKS------GKFRRDAKTELQEWAHAKFGVTP 173
            I AL L+   ++     +++  + +R              RDAK EL         + P
Sbjct: 469 YIGALGLERQFDLKEVKDWLEILYAKRIADLQREYIKDPLDRDAKAELYSMI-GTGDLHP 527

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YKV   +G      + V   ++     +G+  +++ A   AA   LK 
Sbjct: 528 TYKV-HSAGDGIHTDYVVDCFMNREFLGRGIAVNQKEASLRAAMNALKN 575



 Score = 40.1 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 27/87 (31%), Gaps = 10/87 (11%)

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
           +  +     +   D K  L      + G  PEY V       H    TV + I  L  A 
Sbjct: 638 FPIKVDYDDELEHDVKNSLYALIGKETGTKPEYVVAATENNKH----TVQLRIRNLNVAT 693

Query: 203 GMDCSKRAAEQVAA------AEVLKRE 223
             D SKR A    A         LK  
Sbjct: 694 ACDTSKRKAMSRCANAIWKDKAALKEL 720


>gi|168061351|ref|XP_001782653.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162665886|gb|EDQ52556.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 514

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 57/266 (21%), Positives = 102/266 (38%), Gaps = 50/266 (18%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSI------------------------------ 32
            L+   L +++G +  +R LL + L H S                               
Sbjct: 245 NLQLQILTEKLGCSIHSRELLLRILVHKSYYLSKMPQSVKEKKLRKPLMSWQRSGTVEDN 304

Query: 33  ----SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQ-V 87
               + ++ E+  +L  +GD +L L+ ST L   +     G ++ R + LV     ++  
Sbjct: 305 LMTFADAHAEARLKLALIGDTVLNLVASTHLIRQYPLLSTGSITERRSQLVCNSNLARAW 364

Query: 88  ARELDLASFIRVSSDLRKDVCSFMTSIQ-------ADVVESLIAALYLDGGIEVAGTFVD 140
              LDL   +     L +   +  T++        AD +E+ I  LY++ G+E    FV+
Sbjct: 365 CTLLDLRELVLCDPLLSRSKKASATALLENQMKACADTLEAYIGGLYVEKGLESTLQFVE 424

Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH----DPRFTVVVEIS 196
                  L   K  R+  T L +         P+YK+    G D+    +    + V + 
Sbjct: 425 TR-LLPLLLLAKPTRNPVTILHDRCAMVLQEKPDYKLI---GVDNQNTPNESCRIRVYVK 480

Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLKR 222
           G   + G+  S+R A Q AA + L +
Sbjct: 481 GFRLSTGIGKSQRLARQDAAEKALLK 506


>gi|124486133|ref|YP_001030749.1| hypothetical protein Mlab_1315 [Methanocorpusculum labreanum Z]
 gi|124363674|gb|ABN07482.1| ribonuclease III [Methanocorpusculum labreanum Z]
          Length = 145

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 5/146 (3%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLL 59
           + YS L  +IGY FAN  LL  ALT ++ +   +    E+ + L  LGD +L L++   L
Sbjct: 1   MNYSDLYAKIGYTFANVDLLLHALTRTAYARENELSMSETMDSLAVLGDAVLDLIVIRRL 60

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
                   +GE++ +   LV+     ++A ++ L  ++R      +        + A+  
Sbjct: 61  IEEG-EFDKGEITRKKIDLVNMTVVRKLAEDIGLPEYMRWGKGELRMQIWTSGRVSAECF 119

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQ 145
           E+L+ A YLDGG+E +   +D  W  
Sbjct: 120 EALMGAAYLDGGVEASSAILDHVWMP 145


>gi|242807890|ref|XP_002485049.1| nucleolar RNAse III, putative [Talaromyces stipitatus ATCC 10500]
 gi|218715674|gb|EED15096.1| nucleolar RNAse III, putative [Talaromyces stipitatus ATCC 10500]
          Length = 371

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 87/225 (38%), Gaps = 32/225 (14%)

Query: 23  LEKA-LTHSSI-----SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           LE+A  TH        +   +++Y+RLE LGD  + ++ + L++  F     G +S    
Sbjct: 123 LERAVFTHPGAPVNVAAEGMEQNYDRLEVLGDAYVEVIATRLIWEQFKDMPAGRMSQVRE 182

Query: 77  SLVSAETCSQVARELDLASFIRVSSDL-RKDVCSFMTSIQADVVESLIAALYLD---GGI 132
            LV  ET +  A +      + VS+   ++        I+ DV E+ +AA+ L     G 
Sbjct: 183 DLVKNETLAGFATQYGFDKRVSVSALEDQRAQTKRWLKIRGDVFEAYVAAVILSNPLHGF 242

Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTEL--QEWAHAK---FGVTPEYKVTFRSGPDHD- 186
           ++   ++ + W  R L     +    T L  +E    +    G+   Y       P    
Sbjct: 243 DIVEKWLRELWLPRLLHVPPAQ----TALKHKEQLAKRIMGKGIKLRYV---EEQPAKQL 295

Query: 187 ----PRFTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLKR 222
                 F + V ++G          G   +K  A   AA + L+ 
Sbjct: 296 EGGMQTFYIGVYLTGWGWQDQHLGSGSGLNKAIAGDEAAHKALEN 340


>gi|887620|emb|CAA90210.1| unknown [Saccharomyces cerevisiae]
          Length = 362

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 84/233 (36%), Gaps = 30/233 (12%)

Query: 16  AFANRSLLEKALTHSSI---------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
              + ++  +   H S          S       ERLEFLGD IL  +++ +++N F   
Sbjct: 95  EIQDLAIRARVFIHKSTIKDKVYLSGSEMINAHNERLEFLGDSILNSVMTLIIYNKFPDY 154

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVS---SDLRKDVCSFMTSIQADVVESLI 123
            EG+LS    +LVS E   Q +   +    ++ +    D   +  +    + ADV E+ I
Sbjct: 155 SEGQLSTLRMNLVSNEQIKQWSIMYNFHEKLKTNFDLKDENSNFQNGKLKLYADVFEAYI 214

Query: 124 AALYLD---GGIEVAGTFVDKYWKQRALKS----------GKFRRDAKTELQEWAHAKFG 170
             L  D     +     ++ K  K    ++           K   +AK +L         
Sbjct: 215 GGLMEDDPRNNLPKIRKWLRKLAKPVIEEATRNQVALEKTDKLDMNAKRQLYSLI-GYAS 273

Query: 171 VTPEYKVTFRSGP-DHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +   Y    +  P   DP   V   +  G     G+  + + A   AA   L+
Sbjct: 274 LRLHYVTVKK--PTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALR 324


>gi|195380844|ref|XP_002049171.1| GJ20897 [Drosophila virilis]
 gi|194143968|gb|EDW60364.1| GJ20897 [Drosophila virilis]
          Length = 1722

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 73/170 (42%), Gaps = 14/170 (8%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  LE+ +GY F +R+ L +ALTH S  ++     Y+ LEF+GD IL  LIS  +F H
Sbjct: 1433 INHQHLEQNLGYTFRDRAYLLQALTHPSNPTNRLTGCYQELEFIGDAILDFLISAYIFEH 1492

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
                  G+L+   ++LV+  T + +        FI   +           ++  + ++S 
Sbjct: 1493 KTRMTPGQLTDLRSALVNNTTLACICVRHRFHFFILAEN-----------ALLTESIQSF 1541

Query: 123  IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT 172
            +   + +         V    ++  ++      D + EL E A  +    
Sbjct: 1542 VQ--FQESQNHRVTNHVRILMEESDVQPEPLDSDDELELAEAAQQQKLAI 1589



 Score = 52.0 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 17/121 (14%)

Query: 110  FMTSIQADVVESLIAALYLDG-GIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHA 167
             +     DV+E+LIAA+YLD   +      V + ++   L+ S     +   +L E    
Sbjct: 1607 DVPKALGDVLEALIAAVYLDCRDLTTTWQVVYRLFEPELLEFSRNVPLNPIRQLFE---- 1662

Query: 168  KFGVTPEYKVTFRSGP--DHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                 P +     S P  D++    V  +           G   + + A+  AA   L++
Sbjct: 1663 HKLAKPTF-----SPPIMDNNQV-MVTCQFICMDKTIKVYGFGNNGKQAKLSAAKHALQK 1716

Query: 223  E 223
             
Sbjct: 1717 L 1717



 Score = 49.7 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 26/59 (44%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
              ER E LGD  L L  +  L N +    EG L+   ++LVS         E D+ + I
Sbjct: 1210 DMERFELLGDCFLKLSATLYLANKYPDWNEGILTQVKSTLVSNRNLLYCLSETDIPTRI 1268


>gi|328773741|gb|EGF83778.1| hypothetical protein BATDEDRAFT_85615 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 1746

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 48/252 (19%), Positives = 90/252 (35%), Gaps = 36/252 (14%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            +       +++++ Y F N  LL  AL         +  +ERLEFLGD I+ +L++   +
Sbjct: 1476 LDQETVDHVQQKLSYNFHNPELLLIALMTPFY--FVKSKFERLEFLGDAIMDILVARYFY 1533

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS----------- 109
             H+  A    LS    + V      ++   L L   +  SS L +               
Sbjct: 1534 RHYKHADPCSLSKMIQATVCKPAFCKILVSLKLHEHLLQSSQLSQHSKEAIVLYANYIQN 1593

Query: 110  --------------FMTSIQADVVESLIAALYLDGGI--EVAGTFVDKY---WKQRALKS 150
                              +  DV E ++AA+++D G   E     +  Y   + Q  +  
Sbjct: 1594 SHSQHAFKQADKAIDGPKVLCDVFEVIVAAIFIDTGYNLERTRLVIFPYVHSFIQSNINL 1653

Query: 151  GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT-VVVEISGLAPAQGMDCSKR 209
                     +L  +  ++   + + +++  S  D    F    V   G   A     + +
Sbjct: 1654 ETITEPPIRQLFAFVQSQGFSSEKLELSDESNADG---FHKASVVFYGTVLATSQATTLK 1710

Query: 210  AAEQVAAAEVLK 221
             A+Q A+ + L 
Sbjct: 1711 LAKQHASIKALN 1722



 Score = 70.1 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 68/162 (41%), Gaps = 28/162 (17%)

Query: 7    STLEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +  +++ G       L  L  A T  + + +   +YERLE LGD++L   ++  L + + 
Sbjct: 1282 AEFDQKYGLYPKQIPLSTLMSAFT--TPAANSITNYERLETLGDKVLKFGVAHYLHSSYQ 1339

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK------------------- 105
            S + G+LS   + LVS +   ++A++  L   +  +                        
Sbjct: 1340 SYEVGQLSTILSGLVSNKNLFEIAQQHSLTGMLNTAPFQSNSWTPPSFCFETRIFVAPTA 1399

Query: 106  -----DVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
                 D   F    Q+D +E+L+ A +L+ G+E A   +  +
Sbjct: 1400 SVDCLDNRVFCGKKQSDFIEALLGAYFLECGVEAALHLMRTF 1441


>gi|322798617|gb|EFZ20221.1| hypothetical protein SINV_06556 [Solenopsis invicta]
          Length = 386

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 62/148 (41%), Gaps = 34/148 (22%)

Query: 25  KALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83
           +A TH S  ++   E Y+RLEFLGD IL  LI+  ++    +   GEL+   ++LV+  T
Sbjct: 150 QAFTHPSYTANGLTECYQRLEFLGDAILDFLITCYIYEKCGNLSPGELTDLRSALVNNIT 209

Query: 84  CSQVARELDLASFIR-------------------------------VSSDLRKDVCSF-- 110
            + +A    L   +                                +  +   ++  +  
Sbjct: 210 FACLAVRYGLHIALLAYAPKLDEIIDRFVKFQEDRDYVVNDELLYVLIEEEECNLVEYVD 269

Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTF 138
           +  +  D+ ESLI A+YLD G ++   +
Sbjct: 270 VPKVLGDLFESLIGAIYLDSGKDLVKIW 297


>gi|224613100|dbj|BAH24210.1| dsRNA-specific ribonuclease RNaseIII [Onion yellows phytoplasma]
          Length = 157

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 3/126 (2%)

Query: 82  ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141
            + +  A  ++L +++ +     K+      SI AD  E+L  A+YLD G   A      
Sbjct: 1   RSLTIYAHNIELQNYLLLGKGE-KNKDFNAKSIIADTFEALFGAIYLDLGYLTAKKVFHN 59

Query: 142 YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201
                 L    +  D KT+LQE   ++   T +YK+    GP H   F   V +      
Sbjct: 60  IVLPH-LAKTIYIIDFKTQLQEIVQSEKK-TIQYKIVQEQGPAHSKNFVAEVYLEKNLLG 117

Query: 202 QGMDCS 207
            G   +
Sbjct: 118 TGEGST 123


>gi|116196272|ref|XP_001223948.1| hypothetical protein CHGG_04734 [Chaetomium globosum CBS 148.51]
 gi|88180647|gb|EAQ88115.1| hypothetical protein CHGG_04734 [Chaetomium globosum CBS 148.51]
          Length = 1476

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 53/233 (22%), Positives = 88/233 (37%), Gaps = 28/233 (12%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +  E R+GYAF +  LL  A  H +    +    SY+RLEFLGD +L +     LF+ F 
Sbjct: 1199 ARFEARMGYAFTHPRLLRSAFQHPTYPSVYEKLPSYQRLEFLGDALLDMASVEFLFHRFP 1258

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             A          +  +    +    +L   SF R   D     CS       DVVE+ + 
Sbjct: 1259 GADPQS-----KTPCNRHATTPSPGDLPAESFAR---DFWV-RCSRPPKCLPDVVEAYVG 1309

Query: 125  ALYLDGGIEVAG------TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
            A+++D   + A         V  +++   L      +   T L      +     E+++ 
Sbjct: 1310 AVFVDSRYDFARVRAFFADHVRPFFEDMRLYDAFANKHPVTFLAGIMQGRMRCA-EWRLL 1368

Query: 179  FRSGPD----------HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             +  P             P+    V + GL  A  +  S R  +  AA + ++
Sbjct: 1369 VKDLPPVVGAGAGTELETPQVVCAVRVHGLTLAHAVAASGRYGKIAAAKKAIQ 1421



 Score = 72.4 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 47/139 (33%), Gaps = 30/139 (21%)

Query: 20   RSLLEKALT--------HS----SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
              L  +A T        H     S       +YERLEFLGD  L +  +  +F       
Sbjct: 1004 PDLALEAFTKDSDNSGEHDAEQISFQSGMGNNYERLEFLGDCFLKMATTISIFTLIPDKA 1063

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIR---------------VSSDLRKDVCSFM- 111
            E E  V    L+        A E+ L   IR               +    RKD+     
Sbjct: 1064 EFEYHVERMLLICNRNLFNNALEVKLEEHIRSMAFDRRSWYPEGLTLKKGKRKDLTRQHV 1123

Query: 112  --TSIQADVVESLIAALYL 128
                  ADV E+LI A YL
Sbjct: 1124 LADKTIADVCEALIGAAYL 1142


>gi|170099920|ref|XP_001881178.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164643857|gb|EDR08108.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1469

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 60/296 (20%), Positives = 102/296 (34%), Gaps = 88/296 (29%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNH 62
            +   +E  +GY F ++ LL +ALTH+S         SYER+EFLGD IL ++++  L+  
Sbjct: 1154 QLVDVESMLGYTFNHKLLLIEALTHASYQQDQYTSSSYERMEFLGDSILDMIVTDYLYRA 1213

Query: 63   F-DSAKEGELSVRFNSLVSAETCSQVA--------------------------------- 88
                   G + +R +++V+A   + +                                  
Sbjct: 1214 PGKEYSPGHMHLRKSAVVNAHFLAFICLRTCLHFDASMPRPSPDSQGDQGPVKIELAPDS 1273

Query: 89   RELDLASFIRVSS-----DLRKDVCSFM--------------------------TSIQAD 117
            +E+ L   +  SS     D       F                               +D
Sbjct: 1274 QEIYLWQCLLHSSPRVLDDQSNTFIRFRKCKAVIEKALEKGIIFPWAALTRLQAPKFLSD 1333

Query: 118  VVESLIAALYLD--GGIEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGV 171
            +VESLI A++LD  G ++     + K       +R ++         + L +WA +K   
Sbjct: 1334 MVESLIGAIFLDSNGDMDCVKGVLRKTGIIQILERIVRDDVDILHPVSRLSDWA-SKNDK 1392

Query: 172  TPEYKVTFRSGPDHDPRFTVVVEI--SGLAPAQGMDCSKRAAEQ-----VAAAEVL 220
              EYK     G        V   I  +G    +     +  A Q      AA + +
Sbjct: 1393 EIEYKFEKSKGN-------VSCIILVNGKEEIRETAVYRGTASQDEVKFAAAEKAI 1441



 Score = 68.6 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 58/155 (37%), Gaps = 37/155 (23%)

Query: 21   SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
             LL  A+T  S   + +++Y+RLE LGD +L  +    L + +    EG L+ + +  VS
Sbjct: 969  QLLMVAITAPS--SNERKNYQRLETLGDTVLKFVCGIQLLSEYPLWHEGYLTRKKDHAVS 1026

Query: 81   AETCSQVARELDLASFI----RVSSDLRKDVCSFMT------------------------ 112
                ++     +L  +I     +    +    S                           
Sbjct: 1027 NVRLAKENVARELYRWIIRDMLLGKKWKPHYLSKKDAETTPEPDKMTVEEVNTKKKKKKG 1086

Query: 113  -------SIQADVVESLIAALYLDGGIEVAGTFVD 140
                    + ADVVES+I A YL GG ++    + 
Sbjct: 1087 KSQSLSTKVLADVVESIIGAAYLHGGFDLGYECIK 1121


>gi|323347050|gb|EGA81326.1| Rnt1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 441

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 84/233 (36%), Gaps = 30/233 (12%)

Query: 16  AFANRSLLEKALTHSSI---------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
              + ++  +   H S          S       ERLEFLGD IL  +++ +++N F   
Sbjct: 204 EIQDLAIRARVFIHKSTIKDKVYLSGSEMINAHNERLEFLGDSILNSVMTLIIYNKFPDY 263

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVS---SDLRKDVCSFMTSIQADVVESLI 123
            EG+LS    +LVS E   Q +   +    ++ +    D   +  +    + ADV E+ I
Sbjct: 264 SEGQLSTLRMNLVSNEQIKQWSIMYNFHEKLKTNFDLKDENSNFQNGKLKLYADVFEAYI 323

Query: 124 AALYLD---GGIEVAGTFVDKYWKQRALKS----------GKFRRDAKTELQEWAHAKFG 170
             L  D     +     ++ K  K    ++           K   +AK +L         
Sbjct: 324 GGLMEDDPRNNLPKIRKWLRKLAKPVIEEATRNQVALEKTDKLDMNAKRQLYSLI-GYAS 382

Query: 171 VTPEYKVTFRSGP-DHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +   Y    +  P   DP   V   +  G     G+  + + A   AA   L+
Sbjct: 383 LRLHYVTVKK--PTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALR 433


>gi|212537957|ref|XP_002149134.1| nucleolar RNAse III, putative [Penicillium marneffei ATCC 18224]
 gi|210068876|gb|EEA22967.1| nucleolar RNAse III, putative [Penicillium marneffei ATCC 18224]
          Length = 296

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 88/225 (39%), Gaps = 32/225 (14%)

Query: 23  LEKA-LTHSS-----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           LE+A  TH            +++Y+RLE LGD  + ++ + L+++HF     G +S    
Sbjct: 47  LERAVFTHPGTPVHIAPEGMEQNYDRLEVLGDAYVEVIATRLIWDHFKDMPAGRMSQVRE 106

Query: 77  SLVSAETCSQVARELDLASFIRVS-SDLRKDVCSFMTSIQADVVESLIAALYL---DGGI 132
            LV  ET +  A +      + VS  + +K        I+ DV E+ +AA+ L   D G 
Sbjct: 107 DLVKNETLAGFASQYGFDKRVSVSAPEEQKAQPKRWLKIRGDVFEAYVAAVVLSNPDHGF 166

Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQ--EWAHAK---FGVTPEYKVTFRSGPDHD- 186
           ++   ++ + W  R       +    T L+  E    +    G+   Y       P    
Sbjct: 167 DIVEQWLRELWLPRLSHVQPVQ----TVLRHKEQLAKRVMSKGIKLRYV---EEQPAKQL 219

Query: 187 ----PRFTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLKR 222
                 + + V ++G          G   +K  A   AA + L+ 
Sbjct: 220 DGGMQTYYIGVYLTGWGWHDQHLGSGSGLNKAIAGDEAANKALQN 264


>gi|154300125|ref|XP_001550479.1| hypothetical protein BC1G_10438 [Botryotinia fuckeliana B05.10]
 gi|150856727|gb|EDN31919.1| hypothetical protein BC1G_10438 [Botryotinia fuckeliana B05.10]
          Length = 1398

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 59/294 (20%), Positives = 106/294 (36%), Gaps = 82/294 (27%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            +E+ + Y F  +SLL +A+TH S +   Q S ERLEFLGD IL  +I T +++H      
Sbjct: 1090 VEQILAYTFTKKSLLVEAMTHPSYTSGTQ-SLERLEFLGDSILDNIIVTAMWSHSTPLSH 1148

Query: 69   GELSVRFNSLVSAETCSQVARELDLAS--------------------------FIRVS-- 100
              + +  ++LV+A+  + +  E+ +                            F+R S  
Sbjct: 1149 FHMHLLRSALVNADFLAFLCMEMSIDQNVTNLTEGKNHRIHETHSRRRVSLVSFLRHSSV 1208

Query: 101  ------SDLRKDVCSFMTSIQ-----------------------ADVVESLIAALYLDGG 131
                   +           I                        +D++ESL+ A+++D G
Sbjct: 1209 RLSIYQKEALSRHAELRDQILEAIYTGDTFPWALLSRLDARKFFSDMIESLLGAVWIDSG 1268

Query: 132  -IEVAGTFVDK----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS----- 181
             +EV    +++     + +R LK G      K EL   A ++      Y +         
Sbjct: 1269 SMEVCTQLIERMGVLRYMRRILKDGVRIMHPKEELGIVADSEN---VRYVLRREKMGGDA 1325

Query: 182  -------GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV-AAAEV---LKREG 224
                     +    +   V + G    +    +++   Q  AA +    LK  G
Sbjct: 1326 TEVNADADEEVRTEYRCTVFVGGEEIVEVRGGARKEEIQARAAEQAVRILKARG 1379



 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 28/151 (18%)

Query: 16   AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
              +++SL++ A+TH+S S     +Y+RLEFLGD IL L  S  L        EG LS   
Sbjct: 963  EISDQSLIQTAITHASYS--LDSNYQRLEFLGDSILKLCTSVQLVAEHLDWHEGYLSAMK 1020

Query: 76   NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT------------------SIQAD 117
            + +VS    S+ A E+ L  +I            +                     I +D
Sbjct: 1021 DRIVSNSRSSRAAAEVGLDEYIMTKK---FTGAKWRPMYVDDLVVTEQKTREMSSKILSD 1077

Query: 118  VVESLIAALYLDGGIEVAGTFVDKYWKQRAL 148
            VVE+LI A      +      +   + +++L
Sbjct: 1078 VVEALIGA-----SLRPVEQILAYTFTKKSL 1103


>gi|6323895|ref|NP_013966.1| Rnt1p [Saccharomyces cerevisiae S288c]
 gi|2500557|sp|Q02555|RNT1_YEAST RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
           Short=RNase III
 gi|1185416|gb|AAB04172.1| Rnt1p [Saccharomyces cerevisiae]
 gi|151945944|gb|EDN64176.1| conserved protein [Saccharomyces cerevisiae YJM789]
 gi|190408465|gb|EDV11730.1| ribonuclease III [Saccharomyces cerevisiae RM11-1a]
 gi|256271587|gb|EEU06629.1| Rnt1p [Saccharomyces cerevisiae JAY291]
 gi|285814244|tpg|DAA10139.1| TPA: Rnt1p [Saccharomyces cerevisiae S288c]
 gi|323303453|gb|EGA57248.1| Rnt1p [Saccharomyces cerevisiae FostersB]
 gi|323332152|gb|EGA73563.1| Rnt1p [Saccharomyces cerevisiae AWRI796]
          Length = 471

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 84/233 (36%), Gaps = 30/233 (12%)

Query: 16  AFANRSLLEKALTHSSI---------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
              + ++  +   H S          S       ERLEFLGD IL  +++ +++N F   
Sbjct: 204 EIQDLAIRARVFIHKSTIKDKVYLSGSEMINAHNERLEFLGDSILNSVMTLIIYNKFPDY 263

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVS---SDLRKDVCSFMTSIQADVVESLI 123
            EG+LS    +LVS E   Q +   +    ++ +    D   +  +    + ADV E+ I
Sbjct: 264 SEGQLSTLRMNLVSNEQIKQWSIMYNFHEKLKTNFDLKDENSNFQNGKLKLYADVFEAYI 323

Query: 124 AALYLD---GGIEVAGTFVDKYWKQRALKS----------GKFRRDAKTELQEWAHAKFG 170
             L  D     +     ++ K  K    ++           K   +AK +L         
Sbjct: 324 GGLMEDDPRNNLPKIRKWLRKLAKPVIEEATRNQVALEKTDKLDMNAKRQLYSLI-GYAS 382

Query: 171 VTPEYKVTFRSGP-DHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +   Y    +  P   DP   V   +  G     G+  + + A   AA   L+
Sbjct: 383 LRLHYVTVKK--PTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALR 433


>gi|46132992|ref|XP_389201.1| hypothetical protein FG09025.1 [Gibberella zeae PH-1]
          Length = 1495

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 90/267 (33%), Gaps = 70/267 (26%)

Query: 14   GYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            GY F +  LL+ A TH S ++S    +Y+RLEFLGD ++ + I   L+ +F  A    L+
Sbjct: 1204 GYHFKSAPLLQSAFTHPSYAYSGNVPNYQRLEFLGDALIDMTIVEYLYRNFPLADPQWLT 1263

Query: 73   VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF---------------------- 110
                ++ S +    +  +L+L   +  ++                               
Sbjct: 1264 EHKMAMASNQFLGCLCVKLNLHHHLLFNTSQFISKIRDYVAELELAEETARQEAEEDGTP 1323

Query: 111  -----------MTSIQADVVESLIAALYLDGGIEVA------GTFVDKYWKQRALKSGKF 153
                            AD +E+L+ A+++D   + +        F+  Y+K  +L     
Sbjct: 1324 MRMDFWLNATTPPKAYADSIEALMGAMFVDSEFDYSVVEDFFTKFIFPYFKDMSLYDTFA 1383

Query: 154  RRDAKTELQEWAHAKFGVTPEYKVTFRSGPD-------------------HDPRFTVVVE 194
             +   T L +    + G      ++    PD                   H+   T  V 
Sbjct: 1384 NKHPYTFLTKKMQQEIGCMKFCMISDTRVPDAERGMEVMKEYDIYSAFQVHERVITCHVS 1443

Query: 195  ISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             SG           + A   AA   L+
Sbjct: 1444 KSGR-YG-------KIA---AAKGALE 1459



 Score = 62.8 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 46/140 (32%), Gaps = 29/140 (20%)

Query: 20   RSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             +L  +A+T  S                   +YERLEFLGD  L +  +  +F     + 
Sbjct: 1006 PALALEAMTKDSDNTEDHGKQQINFQAGMGSNYERLEFLGDSFLKMATTISIFVLKPKSN 1065

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD-----------------VCSF 110
            E    V    L+        A +  L  +IR  +  R+                      
Sbjct: 1066 ECLYHVERMLLICNNNLFNTAVDCKLPEYIRSLAFDRRTWYPDLTLRKGKAFKATARQRL 1125

Query: 111  MTSIQADVVESLIAALYLDG 130
                 ADV E+LI A YL  
Sbjct: 1126 ADKSIADVCEALIGAAYLSS 1145


>gi|223944141|gb|ACN26154.1| unknown [Zea mays]
          Length = 206

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 36/101 (35%), Positives = 57/101 (56%), Gaps = 2/101 (1%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTL 58
           MSA   + +E  +GY F ++SL+E ALTH S    +   ++YERLE+LGD +L  L+S  
Sbjct: 43  MSAKDVTAIEALLGYCFIDKSLVELALTHGSFYWPNRPGDTYERLEYLGDGVLTCLMSRE 102

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99
           +F  + + + G L+    + V  E  ++VA    L  F+R 
Sbjct: 103 VFRTYRTLQPGPLTRLRAANVDTEKLARVAVHRGLHRFLRH 143


>gi|195425457|ref|XP_002061021.1| GK10670 [Drosophila willistoni]
 gi|194157106|gb|EDW72007.1| GK10670 [Drosophila willistoni]
          Length = 1720

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 1/96 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + Y  LE+ +GY F +R+ L +ALTH S  ++     Y+ LEF+GD IL  LIS  +F  
Sbjct: 1436 INYHYLERNLGYTFKDRAYLLQALTHPSNPTNRLTGCYQELEFIGDAILDFLISAYIFER 1495

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
                  G+L+   ++LV+  T + +        FI 
Sbjct: 1496 NIRMNPGQLTDLRSALVNNTTLACICVRHRFHLFIL 1531



 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 5/97 (5%)

Query: 4    LRYSTLEKRI---GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
             + S L+K I       A +S    A+T S  S  +    ERLE LGD  L +  +  L 
Sbjct: 1178 EQLSVLQKTISNEHITPAEQSEFLTAITSSGCSDVF--DMERLELLGDSFLKMSATLYLS 1235

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
            +   +  EG L+   ++LVS         E D+ S I
Sbjct: 1236 SIHSNWNEGVLTQIKSTLVSNRNLLYCMNETDIPSRI 1272


>gi|195023643|ref|XP_001985724.1| GH20958 [Drosophila grimshawi]
 gi|193901724|gb|EDW00591.1| GH20958 [Drosophila grimshawi]
          Length = 1713

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 1/96 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +S LE  +GY F +R+ L +ALTH S  ++     Y+ LEF+GD IL  LIS  +F H
Sbjct: 1421 INHSALEHNLGYTFRDRAYLLQALTHPSNPTNRLTGCYQELEFVGDAILDFLISAYIFEH 1480

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
                  G+L+   ++LV+  T + +     +  FI 
Sbjct: 1481 KTRMTPGQLTDLRSALVNNTTLACICVRHRIHFFIL 1516



 Score = 52.8 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 27/59 (45%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
              ER E LGD  L L  +  L + +    EG L+   ++LVS        R+ D+ S I
Sbjct: 1198 DMERFELLGDCFLKLSATLYLASKYPKWNEGTLTQVKSTLVSNRNLLYCIRDTDIPSRI 1256



 Score = 51.6 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 15/119 (12%)

Query: 110  FMTSIQADVVESLIAALYLDG-GIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHA 167
             +     DV+E+LIAA+YLD   +      V K ++   L+ S     +   +L      
Sbjct: 1598 DVPKTLGDVLEALIAAIYLDCRDLNTTWQVVYKLFEPELLEFSRNVPLNPIRQLN----D 1653

Query: 168  KFGVTPEYKVTFRSGPDHDP-RFTVVVEI---SGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                 P Y     S P  D  +  V  +           G   + + A+  AA   L++
Sbjct: 1654 HKSAKPIY-----SAPVTDKNQVMVTCQFICMEKTIKVYGFGSNGKQAKLSAAKHALQK 1707


>gi|302308935|ref|NP_986085.2| AFR538Cp [Ashbya gossypii ATCC 10895]
 gi|299790864|gb|AAS53909.2| AFR538Cp [Ashbya gossypii ATCC 10895]
          Length = 485

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 51/238 (21%), Positives = 90/238 (37%), Gaps = 35/238 (14%)

Query: 16  AFANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSA 66
              + ++  +  TH S+++               ERLEFLGD IL   ++ +++N F   
Sbjct: 225 EIKDPAIRARVFTHRSLTNDKLYLDEAQMINSHNERLEFLGDSILNTTMTMIIYNKFPGF 284

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVS----SDLRKDVCSFMTSIQADVVESL 122
            EG LS     L++ +   + +    L S +R +    +    +V +    + ADV E+ 
Sbjct: 285 NEGRLSQLRTKLINNDRLKEWSFMYQLPSKLRTNIEMFNGTTHEVSNGKLKLYADVFEAY 344

Query: 123 IAALYLDGG---IEVAGTFVDKY--------WKQRALKSGKFRRDA---KT--ELQEWAH 166
           I  L  + G   +     ++ K          +   +       D    KT   L  +A 
Sbjct: 345 IGGLVEEDGKKNLPRIRKWLAKLAEPVIQEEIENDVVLENTDEVDVNAKKTLYSLIGYAA 404

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                 P ++ T      ++P   V   +  GL    G   + + A   AA EVLK +
Sbjct: 405 LNLHYYPVHRPTN-----NEPYAIVECRVKDGLTLGTGRGKNVKIAGMRAAQEVLKNK 457


>gi|226286856|gb|EEH42369.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
          Length = 1450

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 49/264 (18%), Positives = 93/264 (35%), Gaps = 71/264 (26%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            +  +E  +GY F  +  L +A TH S +     SY+RLEFLGD IL  +I   +FN   +
Sbjct: 1128 FRDIESLVGYIFNKKVFLAQAFTHPS-NPGSTMSYQRLEFLGDSILDHIIVDHIFNSPRN 1186

Query: 66   AKEGELSVRFNSLVSAETCSQVA--------------------------RELDLASFIRV 99
             +  ++ +   SL +A+  + +                           R++ L  ++R 
Sbjct: 1187 FQHVDMHLMRASLANADFLAFLCIGMTTEEERGEIVEASRNGTFTRMTTRKISLWQYMRH 1246

Query: 100  SSDLRKDVCSFMT--------------------------------SIQADVVESLIAALY 127
             +     V    T                                   +D++ES++ A++
Sbjct: 1247 GTSWELTVSQQQTVNQYQALKADITKALYESDTYPWALLSRLRAQKFFSDLIESVLGAIF 1306

Query: 128  LD--GGIEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK---VT 178
            +D  G ++    F+++     + +R L+        K  L E       +   Y+   V 
Sbjct: 1307 IDSHGSLDACAAFLERIGLMNFLRRILQDEIDIMHPKQRLGEMV---GQMQVRYETVHVV 1363

Query: 179  FRSGPDHDPRFTVVVEISGLAPAQ 202
               G D    +T  V +      +
Sbjct: 1364 EEEGGDALGHWTCKVFVDDECVFE 1387



 Score = 76.3 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 61/147 (41%), Gaps = 22/147 (14%)

Query: 17   FANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
            F + +L+  AL     +   +E  +Y+R+EFLGD IL    S  L        EG LS  
Sbjct: 957  FTDLNLVITAL----CAPDAREATNYQRIEFLGDSILKFHTSLQLLAANPIWHEGLLSNA 1012

Query: 75   FNSLVSAETCSQVARELDLASFIRV--------------SSDLRKDVCSF--MTSIQADV 118
             + +VS +  S  A E  L  FI +              +    +D+      T   ADV
Sbjct: 1013 KDEVVSNKRLSYAAIETGLDKFIFMDIFTGVKWRPRYNKAHVEEQDIPRREMSTKTLADV 1072

Query: 119  VESLIAALYLDGGIEVAGTFVDKYWKQ 145
            +E+L+ A  +DGG       +  +  +
Sbjct: 1073 IEALLGAATIDGGRTKVEKCLKIFLPE 1099


>gi|212537955|ref|XP_002149133.1| nucleolar RNAse III, putative [Penicillium marneffei ATCC 18224]
 gi|210068875|gb|EEA22966.1| nucleolar RNAse III, putative [Penicillium marneffei ATCC 18224]
          Length = 374

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 88/225 (39%), Gaps = 32/225 (14%)

Query: 23  LEKA-LTHSS-----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           LE+A  TH            +++Y+RLE LGD  + ++ + L+++HF     G +S    
Sbjct: 125 LERAVFTHPGTPVHIAPEGMEQNYDRLEVLGDAYVEVIATRLIWDHFKDMPAGRMSQVRE 184

Query: 77  SLVSAETCSQVARELDLASFIRVS-SDLRKDVCSFMTSIQADVVESLIAALYL---DGGI 132
            LV  ET +  A +      + VS  + +K        I+ DV E+ +AA+ L   D G 
Sbjct: 185 DLVKNETLAGFASQYGFDKRVSVSAPEEQKAQPKRWLKIRGDVFEAYVAAVVLSNPDHGF 244

Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQ--EWAHAK---FGVTPEYKVTFRSGPDHD- 186
           ++   ++ + W  R       +    T L+  E    +    G+   Y       P    
Sbjct: 245 DIVEQWLRELWLPRLSHVQPVQ----TVLRHKEQLAKRVMSKGIKLRYV---EEQPAKQL 297

Query: 187 ----PRFTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLKR 222
                 + + V ++G          G   +K  A   AA + L+ 
Sbjct: 298 DGGMQTYYIGVYLTGWGWHDQHLGSGSGLNKAIAGDEAANKALQN 342


>gi|259148825|emb|CAY82070.1| Rnt1p [Saccharomyces cerevisiae EC1118]
          Length = 471

 Score =  110 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 83/233 (35%), Gaps = 30/233 (12%)

Query: 16  AFANRSLLEKALTHSSI---------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
              + ++  +   H S          S       ERLEFLGD IL  +++ +++N F   
Sbjct: 204 EIQDLAIRARVFIHKSTIKDKVYLSGSEMINAHNERLEFLGDSILNSVMTLIIYNKFPDY 263

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVS---SDLRKDVCSFMTSIQADVVESLI 123
            EG+LS    +LVS E   Q +   +    ++ +    D   +  +    + ADV E+ I
Sbjct: 264 SEGQLSTLRMNLVSNEQIKQWSIMYNFHEKLKTNFDLKDENSNFQNGKLKLYADVFEAYI 323

Query: 124 AALYLD---GGIEVAGTFVDKYWKQRALKS----------GKFRRDAKTELQEWAHAKFG 170
             L  D     +     ++ K  K    ++           K   +AK +L         
Sbjct: 324 GGLMEDDPRNNLPKIRKWLRKLAKPVIEEATRNQVALEKTDKLDMNAKRQLYSLI-GYAS 382

Query: 171 VTPEYKVTFRSGP-DHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +   Y       P   DP   V   +  G     G+  + + A   AA   L+
Sbjct: 383 LRLHYVTVKN--PTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALR 433


>gi|302422698|ref|XP_003009179.1| RNase3 domain-containing protein [Verticillium albo-atrum VaMs.102]
 gi|261352325|gb|EEY14753.1| RNase3 domain-containing protein [Verticillium albo-atrum VaMs.102]
          Length = 1510

 Score =  110 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/264 (17%), Positives = 84/264 (31%), Gaps = 51/264 (19%)

Query: 10   EKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            E     AF + +LL  A  H S    ++   +Y+RLEFLGD +L ++    LF  F  A 
Sbjct: 1223 EGNFDMAFKSPALLRSAFKHPSYPRQFESVPNYQRLEFLGDALLDMVCVDFLFRKFPDAD 1282

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD--------------------- 106
               L+    ++VS      ++ EL     +   S +  +                     
Sbjct: 1283 PQWLTEHKMAMVSNHFLGSLSVELGFYRRVLHFSGVMANQIKDYVDALTHARQEAEAAAQ 1342

Query: 107  -----------VCSFMTSIQADVVESLIAALYLDGGIEVA------GTFVDKYWKQRALK 149
                                +DVVE+ I A+++D G   +         +  ++   AL 
Sbjct: 1343 ISGVISQDYWLNVQHPPKFLSDVVEAYIGAIFVDSGYNYSQVQAFFEKHIRPFFADMALY 1402

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH----------DPRFTVVVEISGLA 199
                     T L       FG   ++++     P            +        + G  
Sbjct: 1403 DSFASSQPVTTLARMMQQDFGCQ-DWRLLVSELPPSCEDGGATAITETEVICGFMVHGRI 1461

Query: 200  PAQGMDCSKRAAEQVAAAEVLKRE 223
                   S + A+  AA   +++ 
Sbjct: 1462 LLHAKSSSGQYAKVGAAKRAVEKL 1485



 Score = 67.4 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/150 (24%), Positives = 57/150 (38%), Gaps = 34/150 (22%)

Query: 20   RSLLEKALTHSSISHSYQE------------SYERLEFLGDRILGLLISTLLFNHFDSAK 67
              L  +A+T  S +   Q+            +YERLEFLGD  L +  +  LF     + 
Sbjct: 1080 PDLALEAMTKDSSNSDEQDQEKIDFQAGMGNNYERLEFLGDCFLKMATTIALFTRIPDSN 1139

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIRVS--------------SDLRKDVCSFMTS 113
            E E  V    L+  +    VA + +L  +IR                   +        S
Sbjct: 1140 EFEYHVERMLLICNQNLFNVALKKNLQEYIRSKQFDRRSWYPQGLKQKAGKAQGAQNSHS 1199

Query: 114  I----QADVVESLIAALYL----DGGIEVA 135
            +     ADV E++I A YL    +G  ++A
Sbjct: 1200 LADKSIADVCEAMIGASYLSYADEGNFDMA 1229


>gi|255933596|ref|XP_002558177.1| Pc12g13700 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211582796|emb|CAP80997.1| Pc12g13700 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1393

 Score =  110 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 53/287 (18%), Positives = 102/287 (35%), Gaps = 68/287 (23%)

Query: 2    SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLF 60
            + + +  L   IGY F + +LL +ALTH+S  +    +SY+RLEFLGD +L +++  ++ 
Sbjct: 1102 NLINHHRLAGLIGYTFNDPALLTEALTHASCEYDTSTQSYQRLEFLGDAVLDMVVMAVIA 1161

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVAREL--------------------------DLA 94
             H     +G +++  +S+V+A   +    EL                           L 
Sbjct: 1162 GHPVEMDQGPMTLLKHSVVNANLLAFFCMELCAPDEPSHVTQFTNGGINLVPRYDQIHLW 1221

Query: 95   SFIR-VSSD---------LRKDVCS---------------------FMTSIQADVVESLI 123
             F+R    +          R                                +D++ES++
Sbjct: 1222 RFLRSHGPNIKSAQEACLERHQGLRAEIRDALENGTQYPWELFARLRADKFLSDIIESVL 1281

Query: 124  AALYLDGG--IEVAGTFVDK----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
             A+++D G  ++V   FV++    ++ QR +  G      +   Q        +  + K 
Sbjct: 1282 GAIFIDCGGDLDVCYAFVERIGLVWYIQRVIADGVNVVHPRNIAQNMVKGAGTLVFKRKR 1341

Query: 178  TFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEVLKRE 223
                G      +     ++    A      S   AE   A   ++  
Sbjct: 1342 VESGGVA---TYRCSAIVNKTEIALVEGCASAEEAEVKVANVAIEHL 1385



 Score = 84.4 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/150 (27%), Positives = 64/150 (42%), Gaps = 17/150 (11%)

Query: 14   GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
            G    + + +  A+  S+       +Y+R EF GD +L   +S  LF    +  EG LS 
Sbjct: 937  GVGIKDIAHVITAI--SAPIAQASTNYQRYEFFGDSVLKFTVSCQLFFRNGNWHEGYLSE 994

Query: 74   RFNSLVSAETCSQVARELDLASFIRVSS-------------DLRKDVCSFM--TSIQADV 118
              + L+     ++ A +L + SF+  S               L          T + ADV
Sbjct: 995  SRDKLIQNSRLARAALDLGIDSFVLTSRFTPRKWTTPLIRNKLEPSTAKRNISTKVLADV 1054

Query: 119  VESLIAALYLDGGIEVAGTFVDKYWKQRAL 148
            VESLI A Y+DGGI  A   + ++  +  L
Sbjct: 1055 VESLIGAAYVDGGIREAQACLHRFLPEINL 1084


>gi|189199432|ref|XP_001936053.1| conserved hypothetical protein [Pyrenophora tritici-repentis
            Pt-1C-BFP]
 gi|187983152|gb|EDU48640.1| conserved hypothetical protein [Pyrenophora tritici-repentis
            Pt-1C-BFP]
          Length = 1439

 Score =  110 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 71/287 (24%), Positives = 113/287 (39%), Gaps = 77/287 (26%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH 62
            +    +EK +GY F N++LL +ALTH +    +   SYER EFLGD +L  ++S  LF H
Sbjct: 1121 MSLGLVEKLLGYKFTNKALLLEALTHVTFRGLNTNCSYERHEFLGDAVLDYIVSRRLFAH 1180

Query: 63   FDSAKEGELSVRFNSLVSAETCSQ------VAREL-------------DLASFIR----- 98
                   ++     ++V+A   +       V  EL              L  F+R     
Sbjct: 1181 KPELSHRKMHGIRTAMVNASFLAYSMFETTVTDELTNKDTLEPEVHHRALWQFLRSTSNA 1240

Query: 99   ------------------VSSDLRKDVC--------SFMTSIQADVVESLIAALYLD--G 130
                              +++ L+ D          +      +D+VES+I ALY+D  G
Sbjct: 1241 LVASRIVATQQHAEAREIIATGLKHDSRFPWHALSLTDPPKYLSDIVESVIGALYIDSHG 1300

Query: 131  GIEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY-KVTF------ 179
             I +   FV +       +R L+ G      K  L   A      + +Y +VT       
Sbjct: 1301 SIAICEEFVRRLGIISCLERILRDGVDCLHPKERLGILA---VDKSVKYARVTSNLKSEG 1357

Query: 180  --RSGPDHDPRFTVVVEISGLAPA---QGMDCSKR-AAEQVAAAEVL 220
               SG   +  + V V+I G       +G+   KR  AE +AA + +
Sbjct: 1358 ARDSGVP-EKGYKVQVKIGGKDVGGVVEGV---KRLQAETIAAWKAI 1400



 Score = 82.0 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 41/158 (25%), Positives = 56/158 (35%), Gaps = 25/158 (15%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            +  +L  ALT SS  +     Y+RLEFLGD IL  + S  L        EG L+ +   L
Sbjct: 956  HLPILVTALT-SSALNEGN-DYQRLEFLGDCILKFIASLHLMAANLQMPEGMLTGKKGKL 1013

Query: 79   VSAETCSQVARELDLASFIRVSSDLRKDVCSFMT--------------------SIQADV 118
            VS    ++      L  +I      R     +                       + ADV
Sbjct: 1014 VSNGYLARATLAAGLDQYIFHK---RFTGAKWRPRYISQVLAESTLPEKQEKSSKLIADV 1070

Query: 119  VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD 156
            +ESLI A Y+ GG   A   V               +D
Sbjct: 1071 IESLIGASYIIGGFPKAFACVQTLLPLERWTPLSEAKD 1108


>gi|154484153|ref|ZP_02026601.1| hypothetical protein EUBVEN_01864 [Eubacterium ventriosum ATCC
           27560]
 gi|149735195|gb|EDM51081.1| hypothetical protein EUBVEN_01864 [Eubacterium ventriosum ATCC
           27560]
          Length = 379

 Score =  110 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 53/211 (25%), Positives = 86/211 (40%), Gaps = 30/211 (14%)

Query: 1   MSALRYST-------LEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILG 52
           MS L +         +E++IGY F NR LL +A    S S     E+ E LEF+GD+ L 
Sbjct: 1   MSELSFGEAENWVDFVERQIGYKFVNRDLLVQAFVRKSYSMENGGENNEVLEFIGDKALD 60

Query: 53  LLISTLLFNHFDSA------------------KEGELSVRFNSLVSAETCSQVARELDLA 94
           L +   L + +                      EG+L+   + LV  E  S    EL LA
Sbjct: 61  LSVVKTLTDKYGHMISDEPDYEDEDDEFYCEYSEGKLTHLKSLLVRKEYLSARIDELKLA 120

Query: 95  SFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG--GIEVAGTFVDKYWKQR-ALKSG 151
            F+ +S    K+     TS++ D+ E++I A+ LD     +     V    +    L + 
Sbjct: 121 PFLIMSKGDLKNNIDKNTSVKEDLFEAIIGAVTLDTLWDFDKIQDVVGVMLRPELILDAD 180

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
               +    +Q+W    +   P++ +    G
Sbjct: 181 VTDDNYIKLIQDWESKHYNDLPKF-LYKERG 210



 Score = 48.9 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 4/92 (4%)

Query: 133 EVAGTFVDK---YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
           E A  F+++    W  +       + ++ ++L+  A   +   PEY+   +   + +P +
Sbjct: 281 ECAYKFLEEEDLLWTIKDEIENPNKAESISQLEILARRGYFSMPEYEYIEQYDENGNPIW 340

Query: 190 TVVVEISGLA-PAQGMDCSKRAAEQVAAAEVL 220
            V   I            SK+ A++ AA ++L
Sbjct: 341 NVECHIEEEKYYFDAEASSKKVAKKQAAYDML 372


>gi|261190414|ref|XP_002621616.1| RNase3 domain-containing protein [Ajellomyces dermatitidis
           SLH14081]
 gi|239591039|gb|EEQ73620.1| RNase3 domain-containing protein [Ajellomyces dermatitidis
           SLH14081]
 gi|239614955|gb|EEQ91942.1| RNase3 domain-containing protein [Ajellomyces dermatitidis ER-3]
 gi|327356568|gb|EGE85425.1| hypothetical protein BDDG_08370 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 382

 Score =  110 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 95/221 (42%), Gaps = 19/221 (8%)

Query: 19  NRSLLEKALTHSSISHSY-----QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           ++ L    LTH  I +       +++YER+E LGD  + ++ + L+++ F     G LS 
Sbjct: 136 DKQLHTAMLTHEGIHNPNTASLSEKNYERMELLGDAYIEIMATRLVWDTFPRLPAGRLSQ 195

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL---DG 130
               LV  ET ++      L   + V  ++R       T ++ D+ E+ +AA+ L   D 
Sbjct: 196 IRELLVKNETLAEYTTLYGLDQKLMVPPEIRNQ-AKTWTKVKGDLFEAYVAAVILSNRDN 254

Query: 131 GIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEY--KVTFRSGPDHD 186
           G+++   ++ + W  +   ++  K     K EL +    K G+   Y  +    + P   
Sbjct: 255 GVQLVEDWLTQLWIPKLEQIEKEKPVLRYKEELAKLIMDK-GIRLSYLDEKKAINHPGGL 313

Query: 187 PRFTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLKR 222
             F + V ++G          GM  SK  A   AA + L+ 
Sbjct: 314 QTFFIGVYLTGWGHKKECLGSGMGLSKVIAGNEAARKALEN 354


>gi|169768544|ref|XP_001818742.1| ATP-dependent helicase dcl2 [Aspergillus oryzae RIB40]
 gi|121804870|sp|Q2UNX5|DCL2_ASPOR RecName: Full=Dicer-like protein 2; Includes: RecName:
            Full=Endoribonuclease dcl2; Includes: RecName:
            Full=ATP-dependent helicase dcl2
 gi|83766600|dbj|BAE56740.1| unnamed protein product [Aspergillus oryzae]
          Length = 1377

 Score =  110 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 57/281 (20%), Positives = 104/281 (37%), Gaps = 75/281 (26%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            L++ +GY F N  LL +ALTH S  H    +SY+RLEFLGD IL ++I  ++F + +   
Sbjct: 1095 LQRHLGYTFKNEDLLIEALTHPSCQHDQTTQSYQRLEFLGDAILDMVIVPIIFQYSNKIS 1154

Query: 68   EGELSVRFNSLVSAETCSQVAREL--------------------------DLASFIRVSS 101
             G++++  +++V+A        E                           +L  F+R +S
Sbjct: 1155 PGDMTLIKHAVVNANLLGFFCMEFSIEQDKTKVEKTPDGRFAVKSETQHVELWRFMRFNS 1214

Query: 102  DLRKD--------VCSFMTSIQ-----------------------ADVVESLIAALYLDG 130
               +                I                        +D+VES++ A+Y+D 
Sbjct: 1215 LDLQTSRDAALDRHRRLRNKILTSLYHGPSYPWQSLSQLYADKFFSDIVESVLGAIYVDS 1274

Query: 131  G--IEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
            G  +     F+++     + +R L  G      +   Q  +          +V+   G  
Sbjct: 1275 GGDLSACERFLEQIGLLSYVRRVLLDGINVTHPRNIAQRLSKGDALFNLR-RVSDEKGRS 1333

Query: 185  HDPRFTVVVEISG--LAPAQG--MDCSKRAAEQVAAAEVLK 221
                +   V ++   +   +G         AE  AA E ++
Sbjct: 1334 ---MYRCTVTMNDAQIVLVEGCQCGE---EAEVRAANETIE 1368



 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 56/135 (41%), Gaps = 17/135 (12%)

Query: 17   FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
            FA+   +  A+   S       +Y+R EFLGD IL  ++S  LF    +  EG L+    
Sbjct: 925  FADIQHVITAIMAPSA--QGVTNYQRYEFLGDSILKYIVSCQLFFQNLNWPEGFLTEGRT 982

Query: 77   SLVSAETCSQVARELDLASFIRVSS---------------DLRKDVCSFMTSIQADVVES 121
            ++V     ++ A +  L SFI   +                           + ADV+E+
Sbjct: 983  TIVQNPRLTRAALDAGLDSFIITKALTPRRWIAPLISTRVGAAPVKRQMSAKVLADVIEA 1042

Query: 122  LIAALYLDGGIEVAG 136
            LI A YLDGG   A 
Sbjct: 1043 LIGAAYLDGGHSKAQ 1057


>gi|297794783|ref|XP_002865276.1| hypothetical protein ARALYDRAFT_494464 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297311111|gb|EFH41535.1| hypothetical protein ARALYDRAFT_494464 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 892

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 95/248 (38%), Gaps = 35/248 (14%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M +     +EK + Y+F N++LL + LTH     +    ++RL F+G+  L L  +  L+
Sbjct: 345 MDSDSVEAVEKILNYSFVNKNLLNELLTH-----NTSPLFQRLMFVGEPALSLAFTKHLY 399

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR----------------VSSDLR 104
             +   +  +LS+  ++    +  ++VA +  +  FI                 +  +  
Sbjct: 400 LTYPKLEPKDLSLLRDANACNDRYARVAVKKGIYQFIISNVEKPERMILDFIDMMGKEDD 459

Query: 105 KDVCSFM----TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKT 159
            D   +       I A++V ++  A+Y+D    V   + + +   +        R   K 
Sbjct: 460 PDPDPYRVVKAPKILANLVAAVAGAVYIDVNYNVQRLWEIFRGLFEPIYTLDDLRMQPKP 519

Query: 160 ELQEW--AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA--AEQVA 215
                     K G   +++ +   G     +    V +          CSKR   A+ +A
Sbjct: 520 PFLMLFRLADKHGKRIDFRYSKVDG---SRKNIAQVYLDD--MFIASGCSKRIDTAKLLA 574

Query: 216 AAEVLKRE 223
           A E L++ 
Sbjct: 575 AEEALQKL 582



 Score = 85.1 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 6/89 (6%)

Query: 5  RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
              +EK + Y+F N++LL+ A+T  S        ++RLEF GD +L +  +  + + + 
Sbjct: 3  SVEAVEKILNYSFTNKTLLKDAITQRSTL------FDRLEFFGDSVLEVAFTNYIRHTYP 56

Query: 65 SAKEGELSVRFNSLVSAETCSQVARELDL 93
          + K  EL     + VS E  ++VA  L +
Sbjct: 57 NLKVKELCDLRTANVSNEKFARVAEILQI 85



 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 6/76 (7%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE-----ISGLAPAQGMDCSK 208
             D + +L E         P + V    GP ++ +F   V+     I G    +G   SK
Sbjct: 244 PTDGRGKLIEICTKNKWPRPIFSVEEERGPKNEQKFVCSVKIEIPNIEGSFHMKGDAKSK 303

Query: 209 RA-AEQVAAAEVLKRE 223
           +  AE  +A  +++  
Sbjct: 304 KKQAENSSAYHMIRAL 319



 Score = 36.2 bits (83), Expect = 3.9,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 17/41 (41%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
           D K +L E         P + V    GP ++ +F   V+I 
Sbjct: 785 DEKGKLFEICTKNKWPNPIFSVEEERGPKNELKFVCSVKIE 825


>gi|295673975|ref|XP_002797533.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
 gi|226280183|gb|EEH35749.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
          Length = 1450

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/256 (18%), Positives = 90/256 (35%), Gaps = 68/256 (26%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            +  +E  +GY F  +  L +A TH S +     SY+RLEFLGD IL  +I   LFN   +
Sbjct: 1136 FRDIESLVGYTFNKKVFLAQAFTHPS-NPGSTMSYQRLEFLGDSILDHIIVDHLFNSPRN 1194

Query: 66   AKEGELSVRFNSLVSAETCSQVA--------------------------RELDLASFIRV 99
                ++ +   SL +A+  + +                           R++ L  ++R 
Sbjct: 1195 FPHVDMHLMRASLANADFLAFLCIGMTTDEERGEIVEASRNGTFTRMTTRKISLWQYMRH 1254

Query: 100  SSDLRKDVCSFMT--------------------------------SIQADVVESLIAALY 127
             +     V    T                                   +D++ES++ A++
Sbjct: 1255 GTSWELTVSQQQTVNQYQALKADITKALYEADTYPWALLSRLRAQKFFSDLIESVLGAIF 1314

Query: 128  LD--GGIEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            +D  G ++    F+++     + +R L++       K  L E       +   Y+     
Sbjct: 1315 IDSHGSLDACTAFLERIGLMNFLRRILQAEIDIMHPKQRLGEMV---GQMQVRYETVHVV 1371

Query: 182  GPDHDPRFTVVVEISG 197
              D    +T  V +  
Sbjct: 1372 EEDALGHWTCKVFVDD 1387



 Score = 72.0 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 61/147 (41%), Gaps = 22/147 (14%)

Query: 17   FANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
            F + +L+  AL     +   +E  +Y+R+EFLGD IL    S  L        EG LS  
Sbjct: 965  FTDLNLVITAL----CAPDAREATNYQRIEFLGDSILKFHTSLQLLAANPIWHEGLLSNA 1020

Query: 75   FNSLVSAETCSQVARELDLASFIRV--------------SSDLRKDVCSF--MTSIQADV 118
             + +VS +  S  A E  L  FI V              +    +D+      T   ADV
Sbjct: 1021 KDEVVSNKRLSYAAIETGLDKFIFVDIFTGVKWRPLYNKAHVKEQDIPRREMSTKTLADV 1080

Query: 119  VESLIAALYLDGGIEVAGTFVDKYWKQ 145
            +E+L+ A  +DGG       +  +  +
Sbjct: 1081 IEALLGAATIDGGQIKVEKCLKIFLPE 1107


>gi|330913942|ref|XP_003296428.1| hypothetical protein PTT_06534 [Pyrenophora teres f. teres 0-1]
 gi|311331414|gb|EFQ95479.1| hypothetical protein PTT_06534 [Pyrenophora teres f. teres 0-1]
          Length = 1572

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 52/254 (20%), Positives = 88/254 (34%), Gaps = 39/254 (15%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDS 65
             +E +  Y F    LL  A  H S  +      +Y+RLEFLGD +L +   T L+  +  
Sbjct: 1283 KIEAKHPYHFKYPRLLRSAFAHPSYPYIYENIPNYQRLEFLGDSLLDMAFITHLYYKYPD 1342

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRVS----------------SDLRKDVC- 108
                 L+     +VS +    V  +L    +I+ +                   R+    
Sbjct: 1343 KDPQWLTEHKTPMVSNKFLGAVCVKLGWHVYIKQNTAILTSQIRDYVLEAQEAERESGGA 1402

Query: 109  -------SFMTSIQADVVESLIAALYLDG--GIEVAGTF----VDKYWKQRALKS--GKF 153
                   S      ADV+E+  AAL++D      V   F    +  +++   L +     
Sbjct: 1403 VDYWVTISEPPKCLADVIEAYTAALFVDAEFDFSVVQDFFNLHLKPFFEDMTLDAYENFA 1462

Query: 154  RRDAKTELQEWAHAKFGVTPEYKV----TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
                 T L       FG   ++++    T    PD       ++ I G      +  S R
Sbjct: 1463 SNHPTTRLSRILSINFGCN-DWRMGALETETIIPDKGKAIAAMIMIHGKVHFYSLGQSGR 1521

Query: 210  AAEQVAAAEVLKRE 223
             A   A+   L++ 
Sbjct: 1522 YARVRASHAALEKL 1535



 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 51/160 (31%), Gaps = 49/160 (30%)

Query: 20   RSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             +L  +ALT  S                   +YERLEFLGD  L +  S  +F       
Sbjct: 1065 PALALEALTKDSENSEEHGEEKINFKSGMGPNYERLEFLGDCFLKMATSLSVFVQQPDEN 1124

Query: 68   EGELSVRFNSLVSAETCSQVA-------------RELDLASFIRV--------------- 99
            E E  VR   ++  +   + A             R++ L ++IR                
Sbjct: 1125 EFEFHVRRMEMLCNKNLLETAIGKKKVTSADGTERDIQLYNYIRTDSFSRRTWYPEGMKL 1184

Query: 100  --SSDLRKD-------VCSFMTSIQADVVESLIAALYLDG 130
                 + K          +      ADV E+ I A + + 
Sbjct: 1185 LRGKGVNKSEDDWLKLTHNLGDKSIADVCEAFIGAAFQEH 1224


>gi|167046026|gb|ABZ10544.1| dicer-like protein C [Placozoa sp. DMJ-2008]
          Length = 352

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/170 (29%), Positives = 78/170 (45%), Gaps = 35/170 (20%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLL 59
            A     LEK IGY+F N+  + +ALTHSS  H     ES ++LEFLGD IL  +I+   
Sbjct: 178 EANNLERLEKVIGYSFQNKLFMIRALTHSSYHHHNIAIESNQKLEFLGDTILQYIIARHF 237

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSFM------- 111
           FN    AK  +L     ++V+ +  + +   + ++ +I + S DL +D+  F+       
Sbjct: 238 FNSHPDAKPAKLHDFQEAIVNNKCLADIGIAIGVSKYIFQESPDLFRDINQFVKIITCDY 297

Query: 112 -------------------------TSIQADVVESLIAALYLDGGIEVAG 136
                                        +DVVE+LI A+Y+D G  +A 
Sbjct: 298 MIDDEMNYNDRTEALFENFTEEVKIPKPMSDVVEALIGAIYIDTGESIAE 347



 Score = 49.7 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%)

Query: 39 SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
          + E LEFLGD  L  +I+  LF       EG+L+     +V  +   ++ +   +  +I 
Sbjct: 9  NLEGLEFLGDSFLKFIIAANLFISHPKYHEGQLTNELTKIVRNDNLLKLGKSTPICEYII 68


>gi|121717533|ref|XP_001276079.1| RNase3 domain protein [Aspergillus clavatus NRRL 1]
 gi|119404277|gb|EAW14653.1| RNase3 domain protein [Aspergillus clavatus NRRL 1]
          Length = 228

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 55/213 (25%), Positives = 81/213 (38%), Gaps = 18/213 (8%)

Query: 27  LTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQ 86
            TH  +      +Y+RLE LGD  + L+ + L++N F     G +S     LV  ET S+
Sbjct: 6   FTHPGVGKDLNSTYDRLEILGDAYIELIATKLIWNEFKDLSSGRISQMRELLVKNETLSE 65

Query: 87  VARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG---GIEVAGTFVDKYW 143
            A      S   V  D       + T  + D+ ES +AA+ L     G  VA  ++ + W
Sbjct: 66  FAALYGFDSRAAVPHDYLNQPKRW-TKTKGDIFESYVAAVILSRPLDGYSVAERWLTQLW 124

Query: 144 KQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD----HDPRFTVVVEISG 197
               R     + R DAK  L +   AK      Y       P         F + + ++G
Sbjct: 125 LPKLRCTALRQPRLDAKEALAKKIMAKGIKL-RY--IDEYPPSRPSGGVQTFHIALYLTG 181

Query: 198 -----LAPAQGMDCSKRAAEQVAAAEVLKREGI 225
                     G   SK  A   AA + L  E +
Sbjct: 182 WGWHNRHLGSGQGPSKAIAGDAAARQALLNESL 214


>gi|15242329|ref|NP_199328.1| RTL3 (RNase three-like protein 3); RNA binding / double-stranded
           RNA binding / ribonuclease III [Arabidopsis thaliana]
 gi|75171238|sp|Q9FKF0|RTL3_ARATH RecName: Full=Ribonuclease 3-like protein 3; AltName:
           Full=Ribonuclease III-like protein 3; Short=RNase
           III-like protein 3; AltName: Full=Ribonuclease
           three-like protein 3
 gi|9759600|dbj|BAB11388.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007827|gb|AED95210.1| RNAse THREE-like protein 3 [Arabidopsis thaliana]
          Length = 957

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 79/178 (44%), Gaps = 28/178 (15%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M+++    +EK + Y+F N++LL++A+T  S        ++RLEF GD IL +  +  + 
Sbjct: 1   MNSV--EAVEKILNYSFVNKTLLKEAITQKS------PLFDRLEFFGDSILEVAFTNYIC 52

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSF--------- 110
           + + + K  EL     + VS E  +++A   +L  F+ + +  L K V +F         
Sbjct: 53  HTYPNLKVKELRDLRTANVSNEKFARIAVNHNLHHFLLLQNPSLFKKVKNFAEAVRKEDD 112

Query: 111 ---------MTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAK 158
                       I AD +ES+ A +++D   +V   + + +   +            K
Sbjct: 113 PVPYGGLVKAPKILADTLESIAATVFIDVNYDVKRLWEIFRSLLEPIYTPDDLLLQPK 170



 Score = 87.4 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/249 (16%), Positives = 88/249 (35%), Gaps = 42/249 (16%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           M +     +EK + Y+F N++LL++ LTH     +    ++ L F+G+  L L  +  L+
Sbjct: 411 MDS-SVEAVEKILNYSFVNKTLLKELLTH-----NNSPLFQGLMFVGESALSLAFTKHLY 464

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLA---------------SFI-RVSSDLR 104
             +   +  +LSV  ++    +  + VA +  +                 FI  +  +  
Sbjct: 465 LTYPMLEPKDLSVLRDANTCHDKYACVAVKKGIYQSFIGSVPKPEKMTTDFIELMGKEDD 524

Query: 105 KDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTELQE 163
                    I  +++  +  A+Y+D    V     + +   +        R         
Sbjct: 525 PYRVVKAPKILVNLLAGVAGAVYIDVKYNVQRLLEIFRVLLEPIYTLDDLRM-------- 576

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRF---------TVVVEISGLAPAQGMDCSKRAAEQV 214
               K      +++  + G   D R+            V +  +  A G       A+ +
Sbjct: 577 --QLKQPFLMLFRLADKHGKQIDFRYSKDGGSRKNIAQVYMDDMFIASGCAKRIDTAKLL 634

Query: 215 AAAEVLKRE 223
           AA E +++ 
Sbjct: 635 AAEEAIQKL 643



 Score = 43.5 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE-----ISGLAPAQGMDCSKRA-AEQ 213
           EL E         P + V    GP ++P+F   V+     I G    +G   SK+  AE 
Sbjct: 311 ELIEICTKNKWPRPIFSVQEEKGPKNEPKFVCSVKIEIPNIEGTFHMKGDIKSKKKQAEN 370

Query: 214 VAAAEVLKRE 223
             A  +++  
Sbjct: 371 SLAYHMIRAL 380



 Score = 39.3 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 6/74 (8%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE-----ISGLAPAQGMDC-SKR 209
           D K +L E         P + V    G  ++ +    V+     I G    +G    +K+
Sbjct: 837 DEKGKLFEICAKNKWPNPIFSVEEERGQQNEQKIVCSVKIEIPNIEGTFHIKGDAKPTKK 896

Query: 210 AAEQVAAAEVLKRE 223
            AE  +A  +++  
Sbjct: 897 EAENSSADHMIRAL 910


>gi|170086892|ref|XP_001874669.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164649869|gb|EDR14110.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 353

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 55/236 (23%), Positives = 87/236 (36%), Gaps = 22/236 (9%)

Query: 6   YSTLEKRIGYA--FANRSLLEKALTHSSISHSYQESYER---------LEFLGDRILGLL 54
            S    RIG A    +  L+++A TH S +  Y + Y R         L  LG+ +LGL 
Sbjct: 59  LSAFAHRIGLASILTSTDLIQQACTHPSFTALYSQHYPRETPPSTNAQLVILGNSLLGLF 118

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
            +  L   +             + V   TC+ +A+E+     +R     R        S+
Sbjct: 119 ATEYLNAKYPYLPTRVQKAALTAHVGPATCASIAQEMGATPLVRWHRTPRTST---RPSV 175

Query: 115 Q-----ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHA 167
                 A V  +L A +Y    +  A  FV  Y+  R +      +  D K  L E    
Sbjct: 176 LHTDALASVPRALTALVYQQRSLFSARKFVHSYFLSRQIDLRGMLKFLDPKKALLEMVKK 235

Query: 168 KFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                P+ ++   +G   + P F V +        +G   S + AE  AA + L R
Sbjct: 236 FDREKPKSRLLKETGRFSNSPVFVVGIFSGADQLGEGFGSSLKMAEFRAAEDALHR 291


>gi|322707759|gb|EFY99337.1| Dicer-like protein 2 [Metarhizium anisopliae ARSEF 23]
          Length = 1442

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 60/280 (21%), Positives = 104/280 (37%), Gaps = 64/280 (22%)

Query: 3    ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFN 61
                  LE  +GY F  +SLL +A+TH S    Y + SYE LEF+GD IL  +I   ++ 
Sbjct: 1152 PAELKPLEHLVGYQFNKKSLLIEAMTHQSCMFDYQRRSYEHLEFIGDAILDFIIVRKMYT 1211

Query: 62   HFDSAKEGELSVRFNSLVSAETCSQVARE-----------------------LDLASFIR 98
                    ++     ++V+A+  + ++ +                       L L +F+R
Sbjct: 1212 AEPLLAPHQMHSLKTAMVNADFLAFLSLDHQMRRTETAVTSDLQIVDKETTPLALWTFMR 1271

Query: 99   VSSDL----------------------RKDVCSF---------MTSIQADVVESLIAALY 127
             SS+                        +    +              +D+ ESL+ A++
Sbjct: 1272 HSSEAIGIEQATTLKRYEALRGEILATLRQGSHYPWALLAGLQAKKFYSDIFESLLGAVW 1331

Query: 128  LDGG-IEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
            +D G IE+    + K+       R LK     +  K  L + A  +   T  Y V  +  
Sbjct: 1332 VDSGSIELCECMLQKFGVLSILDRLLKDRVQVQHPKEVLGKMAVTQ---TVTYNVDVQEA 1388

Query: 183  PDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVLK 221
            PD D  FT  V +      + +   +K   +  AA   ++
Sbjct: 1389 PDGDRAFTCRVLVGQRVITEVVDGVTKEEVKTKAAEAAIR 1428



 Score = 90.5 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/156 (28%), Positives = 69/156 (44%), Gaps = 21/156 (13%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
            +T+ +RI     +  L+ +A++  S +     +YERLEFLGD IL    +  +       
Sbjct: 977  TTILERINIT--DLRLVREAISSRSAAEPV--NYERLEFLGDSILKYCTAIQVSAIHPEW 1032

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDVCS 109
             EG LS   + LVS    S+ A ++ LA FI                    +  +     
Sbjct: 1033 PEGYLSFFKDRLVSNSRLSRAAIDVGLAKFILTKTFTGQKWRPLYLENYTGNPGKVSPRK 1092

Query: 110  FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145
              T   ADVVE+LI A Y++GGI  A + +  +  +
Sbjct: 1093 LSTKTLADVVEALIGASYVNGGITKALSCISLFVNE 1128


>gi|195997771|ref|XP_002108754.1| hypothetical protein TRIADDRAFT_18215 [Trichoplax adhaerens]
 gi|190589530|gb|EDV29552.1| hypothetical protein TRIADDRAFT_18215 [Trichoplax adhaerens]
          Length = 1018

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/180 (27%), Positives = 79/180 (43%), Gaps = 37/180 (20%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNH 62
               LEK IGY+F N+  + +ALTHSS  H     ES ++LEFLGD IL  +I+   FN 
Sbjct: 813 NLERLEKVIGYSFQNKLFMIRALTHSSYHHHDIAIESNQKLEFLGDTILQYIIARHFFNS 872

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSF----------- 110
              AK  +L     ++V+ +  + +   + ++ ++ + S DL +D+  F           
Sbjct: 873 HPDAKPAKLHDFQEAIVNNKCLAVIGIAIGVSKYVFQESPDLFRDIDQFAKIITCDYMID 932

Query: 111 ---------------------MTSIQADVVESLIAALYLDGG--IEVAGTFVDKYWKQRA 147
                                +    +DVVE+LI A+Y+D G  I      +    + R 
Sbjct: 933 DEMNYNDRTEALFENFTEEVKIPKPVSDVVEALIGAIYIDTGESIAEVTKALMPLLQPRI 992



 Score = 57.4 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           L +ALT +        S ERLEFLGD  L  +I+  LF       EG+L+     +V  +
Sbjct: 627 LLEALTLAEAEDDI--SLERLEFLGDSFLKFIIAANLFISHPKYHEGQLTNELTKIVRND 684

Query: 83  TCSQVARELDLASFIR 98
              ++ +   +  +I 
Sbjct: 685 NLLKLGKSTPICEYII 700


>gi|52549755|gb|AAU83604.1| similar to ribonuclease III [uncultured archaeon GZfos32E4]
          Length = 264

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 59/246 (23%), Positives = 104/246 (42%), Gaps = 31/246 (12%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLF 60
                 LE  IG+ F N +LLE+A+T  S S+ +    +Y+ LEFLGDR+L L+++  LF
Sbjct: 13  KFELMELEASIGHQFKNIALLEEAITTGSYSNEHPGSSNYQTLEFLGDRVLSLILAEELF 72

Query: 61  N--HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
                 S  EG+++     L +    ++    + L ++IR +             + ADV
Sbjct: 73  KLSKSASLDEGKMTFLKAELENNLRLAEYGENIGLRNYIRANEKRED----IRPKVIADV 128

Query: 119 VESLIAALYLDGG----IEVAGTFVDKYW----KQRALKSGKFRRDAKTELQEWAHAKFG 170
            E++  A+YLD      I+     + K+      ++ + SGK     + + +     K  
Sbjct: 129 FEAICGAIYLDTEESIRIKEVKKILLKFEILERIKKEMSSGKGFLPIRNQFENKFREKHR 188

Query: 171 VTPEYKVTFRS--GPDHDPRFTVV-VEISGLAPAQGMD------------CSKRAAEQVA 215
             PE K   +S  G +H  R+ +    I  +   + ++             SK  A+  A
Sbjct: 189 CNPEIKFEQKSTLGEEHPTRWRIEKCSIKDIQTGEYVELRGVRSDTDKSFSSKSEAKTDA 248

Query: 216 AAEVLK 221
             +  K
Sbjct: 249 IKQAYK 254


>gi|325093360|gb|EGC46670.1| dicer-like protein [Ajellomyces capsulatus H88]
          Length = 1436

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 54/282 (19%), Positives = 97/282 (34%), Gaps = 67/282 (23%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            +  +E  +GY F  +  L +A TH S   S   SY+RLEF+GD IL  +I   LFN   +
Sbjct: 1097 FQEVESLVGYVFNKKVFLVQAFTHPSNPGSKTSSYQRLEFVGDAILDHIIVYHLFNAPRT 1156

Query: 66   AKEGELSVRFNSLVSAETCSQVA--------------------------RELDLASFIRV 99
                ++ +   +L +A+  + +                           R++ L  ++R 
Sbjct: 1157 LPHFDMHLMRTALANADFLAFLCIGMSTERVRGEIAECSKENTSTKLTTRKVSLWQYMRH 1216

Query: 100  SSDLRKDVCSFMTSIQ--------------------------------ADVVESLIAALY 127
             +          T+ Q                                +D++ES++ A++
Sbjct: 1217 GTSWELTAAQQQTANQYQTLQADISEALEKSHTYPWTLLSRLHAQKFFSDLIESVLGAIF 1276

Query: 128  LD--GGIEVAGTFVDK-----YWKQRALKSGKFRRDAKTEL-QEWAHAKFGVTPEYKVTF 179
            +D  G +E    F+++     + ++  +         K  L QE    K     E+ V  
Sbjct: 1277 IDSHGSLEACTAFLERIGLMKFLRRMLVDEDMDLMHPKQRLGQEVGTRKVRYEAEHVVDE 1336

Query: 180  RSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVL 220
              G      +T  V +      +     S    E  AA   L
Sbjct: 1337 EGGIGTLGYWTCKVFVGDECVVEANDGVSLMEVEAKAAETAL 1378



 Score = 79.0 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 44/149 (29%), Positives = 67/149 (44%), Gaps = 20/149 (13%)

Query: 15   YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
             AF + SL+  A++ +S +     +Y+R+EFLGD IL    +  L        EG LS  
Sbjct: 922  VAFTDLSLVITAIS-ASAAREAT-NYQRIEFLGDSILKFQTTLQLTAANPIWHEGLLSRA 979

Query: 75   FNSLVSAETCSQVARELDLASFIRVS-----------------SDLRKDVCSFM-TSIQA 116
             +++VS +  S  A E  L  FI +                  S+ +      M T   A
Sbjct: 980  KDTVVSNKRLSYAAIETGLDKFILLDVFTGAKWRPPCNKDHLESEEQGVPQREMSTKTLA 1039

Query: 117  DVVESLIAALYLDGGIEVAGTFVDKYWKQ 145
            DVVE+L+AA  LDGG   A   ++ +  +
Sbjct: 1040 DVVEALLAAATLDGGQRKAEKCLEIFLPE 1068


>gi|310794561|gb|EFQ30022.1| RNase3 domain-containing protein [Glomerella graminicola M1.001]
          Length = 334

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 55/254 (21%), Positives = 92/254 (36%), Gaps = 51/254 (20%)

Query: 16  AFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
             +N  L   A TH  ++ +  + SY+RLE+LGD  L L+ S+L+F  F     G+ S  
Sbjct: 61  KISNPVLEMAAFTHVGMAKTKTDLSYDRLEWLGDAYLELISSSLIFQTFGGLPTGKCSQL 120

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDLRKDVC-------SFMTSIQADVVESLIAALY 127
              L+      + +    L    ++ S+ R +           +  +  D+ E+ +AA+ 
Sbjct: 121 RELLIRNSNLGEYSAHYKLFERAKLPSEYRPNGTLPAMAKPHEIQKVHGDLFEAYVAAIA 180

Query: 128 LD---GGIEVAGTFVDKYWKQRALKSGKFR-RD--------------------AKTELQE 163
           L     G+  A  ++   W +      +   RD                     K  L +
Sbjct: 181 LSDPVSGLSRAAEWLKTLWARTIRDQIRTNARDPGMGMVKELGGTTTVETQVPPKVRLSQ 240

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPR---------FTVVVEISG-----LAPAQGMDCSKR 209
              AK G+   Y       P  + +         FTV V + G          G D +K+
Sbjct: 241 IISAK-GINIRY----EDMPSANKKDKYNKKLALFTVGVYLDGWGEKNKLLGTGSDLNKK 295

Query: 210 AAEQVAAAEVLKRE 223
            A Q AA   L  +
Sbjct: 296 EAGQKAAQMALNNK 309


>gi|289619621|emb|CBI53904.1| unnamed protein product [Sordaria macrospora]
          Length = 1586

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 54/284 (19%), Positives = 97/284 (34%), Gaps = 74/284 (26%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
               +R+GY F +  LL  A  H +    +    SY+RLEFLGD +  ++    LF  F +
Sbjct: 1260 KFSERMGYKFKHPRLLRAAFQHPTYPSLYERLPSYQRLEFLGDALFDMVAVDYLFRKFPA 1319

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSFMTSI---------- 114
            A    L+    ++VS +    ++  L     +  +S  + KD+  ++T I          
Sbjct: 1320 ADPQWLTEHKMAMVSNQFLCCLSYHLGFYKCVATMSPSILKDIAEYVTEIEEALEAAKQE 1379

Query: 115  ----------------------------QADVVESLIAALYLDG--GIEVAGTF----VD 140
                                         +DVVE+ I A+++D      V   F    V 
Sbjct: 1380 AVNQGKAPEEYSRDYWVHITHVSRLPKCLSDVVEAYIGAIFVDSEYDYSVVQQFFTTHVL 1439

Query: 141  KYWKQRALKSGKFRRDAKTEL----------QEW--AHAKFGVTPEY-----------KV 177
             +++   L      +   T +          QEW     +                  ++
Sbjct: 1440 PFFEDMHLYDSFANKHPVTFVANMMAHKFCCQEWRSLAKELDTDVSEGRGGRGGAVAGEI 1499

Query: 178  TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            T      + P+    + + G   A  +  S R A+   A + +K
Sbjct: 1500 TEI----NPPKVVSALLVHGKTVAHAVAASGRYAKSAMAKKAIK 1539



 Score = 70.1 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/150 (24%), Positives = 52/150 (34%), Gaps = 31/150 (20%)

Query: 11   KRIGYAFANRSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTL 58
            K +G       L  +A T  S                  ++YERLEFLGD  L +  +  
Sbjct: 1058 KLLGLDLR-PDLALEAFTKDSDNSNEHDVEQVNFQTGMGDNYERLEFLGDSFLKMATTMS 1116

Query: 59   LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR---------------VSSDL 103
            ++       E E  V    L+  +     A E+ L  +IR               +    
Sbjct: 1117 IYTLIPDKGEFEYHVERMLLICNKNLLNNALEVGLEEYIRSMSFNRRQWYPEGLVLKKGK 1176

Query: 104  RKDVCSFM---TSIQADVVESLIAALYLDG 130
             KD  +         ADV E+LI A YL G
Sbjct: 1177 NKDARTRHVLADKSIADVCEALIGAAYLTG 1206


>gi|67525463|ref|XP_660793.1| hypothetical protein AN3189.2 [Aspergillus nidulans FGSC A4]
 gi|40743766|gb|EAA62953.1| hypothetical protein AN3189.2 [Aspergillus nidulans FGSC A4]
          Length = 1726

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 92/246 (37%), Gaps = 81/246 (32%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNH 62
            ++   LE  IGY F +++LL +ALTH S  +    +SY+RLEFLGD +L +LI  L+  H
Sbjct: 1351 IQQENLENHIGYTFKDKTLLMEALTHPSCPYDTSIQSYQRLEFLGDAVLDMLIVDLIRAH 1410

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVA------------------------------RELD 92
                ++GE++   +++V+    + +                               + L 
Sbjct: 1411 HVECQQGEMTKIKHAIVNGHLLAFLCMQFKWAMPSPLTPSIDTGTETETEIISPPPKTLS 1470

Query: 93   LASFIRVS------------SDLRKDVCSFM---TSIQ---------------------- 115
            L S++R S            S     +        SI                       
Sbjct: 1471 LYSYLRYSPSRPLPLHVEPESGSSNALTRHNLLCPSILHALNNTTAYPWSLFSAIHADKF 1530

Query: 116  -ADVVESLIAALYLDGG--IEVAGTFVDKY----WKQRALKSGKFRRDAKT-----ELQE 163
             +DVVES+I A+++D G  +     F+++       +R L          T     ELQ+
Sbjct: 1531 FSDVVESIIGAIFVDSGGDLGACAGFIERLGLVRIAKRILDERVDVTHP-TQRAQIELQK 1589

Query: 164  WAHAKF 169
             A    
Sbjct: 1590 LAARLG 1595



 Score = 90.9 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 17/156 (10%)

Query: 15   YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
              F +   +  A+T           Y+R EF GD +L   ++  LF +  +  EG L+  
Sbjct: 1182 IQFQDLRHVITAITMPLA--QAPTDYQRYEFFGDSVLKFTVAASLFYNNPNWHEGYLTET 1239

Query: 75   FNSLVSAETCSQVARELDLASFI-------------RVSSDLRKDVCSFMTS--IQADVV 119
             ++LV     ++ A +  L ++I              +S  L     +   S  + ADVV
Sbjct: 1240 LHALVQNARLTRAALDQGLDAYIISNRFTPRKWSAPLISEKLYASASTRSMSAKVLADVV 1299

Query: 120  ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
            E+LI A Y+DGG+  A + + ++  +  L   K  R
Sbjct: 1300 EALIGAAYIDGGLHKAQSCIVRFLPEIELPETKLPR 1335


>gi|240276002|gb|EER39515.1| dicer-like protein [Ajellomyces capsulatus H143]
          Length = 800

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 53/282 (18%), Positives = 96/282 (34%), Gaps = 67/282 (23%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           +  +E  +GY F  +  L +A TH S   S   SY+RLEF+GD IL  +I   LFN    
Sbjct: 461 FQEVESLVGYVFNKKVFLVQAFTHPSNPGSKTSSYQRLEFVGDAILDHIIVYHLFNAPRI 520

Query: 66  AKEGELSVRFNSLVSAETCSQVA--------------------------RELDLASFIRV 99
               ++ +   +L +A+  + +                           R++ L  ++R 
Sbjct: 521 LPHFDMHLMRTALANADFLAFLCIGMSTERVRGEIAECSKENTSTKLTTRKVSLWQYMRH 580

Query: 100 SSDLRKDVCSFMTSIQ--------------------------------ADVVESLIAALY 127
            +          T+ Q                                +D++ES++ A++
Sbjct: 581 GTSWELTAAQQQTANQYQTLQADISEALEKSHTYPWTLLSRLHAQKFFSDLIESVLGAIF 640

Query: 128 LD--GGIEVAGTFVDK-----YWKQRALKSGKFRRDAKTEL-QEWAHAKFGVTPEYKVTF 179
           +D  G ++    F+++     + ++  +         K  L QE    K     E+ V  
Sbjct: 641 IDSHGSLDACTAFLERIGLMKFLRRMLVDEDMDLMHPKQRLGQEVGTRKVRYEAEHVVDE 700

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVL 220
             G      +T  V +      +     S    E  AA   L
Sbjct: 701 EGGIGTLGYWTCKVFVGDECVVEANDGVSLMEVEAKAAETAL 742



 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/149 (29%), Positives = 67/149 (44%), Gaps = 20/149 (13%)

Query: 15  YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
            AF + SL+  A++ +S +     +Y+R+EFLGD IL    +  L        EG LS  
Sbjct: 286 VAFTDLSLVITAIS-ASAAREAT-NYQRIEFLGDSILKFQTTLQLTAANPIWHEGLLSRA 343

Query: 75  FNSLVSAETCSQVARELDLASFIRVS-----------------SDLRKDVCSFM-TSIQA 116
            +++VS +  S  A E  L  FI +                  S+ +      M T   A
Sbjct: 344 KDTVVSNKRLSYAAIETGLDKFILLDVFTGAKWRPPCNKDHLESEEQGVPQREMSTKTLA 403

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQ 145
           DVVE+L+AA  LDGG   A   ++ +  +
Sbjct: 404 DVVEALLAAATLDGGQRKAEKCLEIFLPE 432


>gi|169868762|ref|XP_001840952.1| hypothetical protein CC1G_03181 [Coprinopsis cinerea okayama7#130]
 gi|116498110|gb|EAU81005.1| hypothetical protein CC1G_03181 [Coprinopsis cinerea okayama7#130]
          Length = 2074

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 58/307 (18%), Positives = 102/307 (33%), Gaps = 103/307 (33%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHF 63
            + + +E  +GY F  + LL +ALTH+S        SYER+EF+GD IL ++++ +L+   
Sbjct: 1732 QLADVEHMLGYTFKRKILLIEALTHASYREHINTISYERMEFIGDSILDMVVTDMLYRAP 1791

Query: 64   DSAKEGELSVRFNSLVSAETCSQV------------------------------------ 87
                 G + +R +++V+    + +                                    
Sbjct: 1792 REYSPGHIHLRRSAVVNGHFLAYICLGMWRELEGVMPQPSASSNAGKDDWNPYLNPPTFE 1851

Query: 88   ----ARELDLASFIRVSS-----DLRKDVCSF--------------------------MT 112
                A  + L+  +  SS     DLR  V  +                            
Sbjct: 1852 EGTTAHRIHLSQCLLHSSQQVLDDLRNTVERYELRREEIADALEHGSIFPWSSLTRLQAP 1911

Query: 113  SIQADVVESLIAALYLDGGIE--VAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAH 166
               +D+VES I A ++D G    V  + + +       +R ++         + L  WA 
Sbjct: 1912 KFLSDIVESTIGAAFIDSGFSIPVVTSIIRRIGILPVLERIIRDDVDVLHPVSRLSMWA- 1970

Query: 167  AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ------------V 214
            A+     EYK   + G          V + G+          R  E+             
Sbjct: 1971 AQNERKVEYKYEKKRGD-----VACTVVVDGVEEV-------REVEKYRGVSSEVEVRFA 2018

Query: 215  AAAEVLK 221
            AA   +K
Sbjct: 2019 AAERAIK 2025



 Score = 52.0 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 2/76 (2%)

Query: 23   LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
            L  ALT       +  +Y+RLE LGD +L  L    +F  +    EG L+ R +  V+  
Sbjct: 1493 LTVALTAPVAGERH--NYQRLETLGDTVLKFLAGIQIFAEYPMWHEGYLTKRKDHAVANV 1550

Query: 83   TCSQVARELDLASFIR 98
              ++   +  +  +I 
Sbjct: 1551 RLAKECVKRGVVRWII 1566


>gi|116204679|ref|XP_001228150.1| hypothetical protein CHGG_10223 [Chaetomium globosum CBS 148.51]
 gi|88176351|gb|EAQ83819.1| hypothetical protein CHGG_10223 [Chaetomium globosum CBS 148.51]
          Length = 327

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 57/235 (24%), Positives = 89/235 (37%), Gaps = 32/235 (13%)

Query: 19  NRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
           + +L   ALTHS +  +  + SYE+LE++GD  L L+ S L+   F +   G  S     
Sbjct: 68  DSALETAALTHSGMRKNLSDPSYEQLEWIGDVYLELIASELISQTFPTLDPGRSSHYREM 127

Query: 78  LVSAETCSQVARELDLASFIR----VSSDLRKDVC----SFMTSIQADVVESLIAALYL- 128
           LV   T  Q A    L              R +              D+ E+ + A+   
Sbjct: 128 LVRNSTLGQFAVHYGLDKRANFPAEFGLGGRPNGTKASEKQRAKALGDIFEAYVGAIVRS 187

Query: 129 --DGGIEVAGTFVDKYWKQ------RALKSGKFRRD----AKTELQEWAHAKFGVTPEYK 176
             + G+  A  ++   W        R  +SG   +D     KT+L++      GV  EYK
Sbjct: 188 DPENGMRRAAEWLKMLWGPVLERQIREEESGSRVKDRDLNPKTQLEQMI-GGPGVRIEYK 246

Query: 177 VTFRSGP---DHDPR-FTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLKR 222
                G    D +   F V   ++G     L    G    K+ A Q AA + ++ 
Sbjct: 247 DLPSGGKKDRDTNQELFFVGCFLTGWGETSLQLGYGGALGKKEAGQKAAVKAMEN 301


>gi|328768090|gb|EGF78137.1| hypothetical protein BATDEDRAFT_37305 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 343

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 88/231 (38%), Gaps = 13/231 (5%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +  + +    R G  F    +L   +TH S    + ES +R  +LG  +L   ++  +  
Sbjct: 84  NKAQVAAFSARTGILFDTPDILSLVMTHKSA---HLESNDRYVYLGSTVLKTFVTEYVLA 140

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV--SSDLRKDVCSFMTS-IQADV 118
            +   +         + +S    + V + L +   +R   S+D   +  S   + ++A V
Sbjct: 141 KYPLMQADIAERVIEAYISTSVVASVGQTLGVHLLMRWKGSTDANSNAVSDGVNTVRASV 200

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRA-----LKSGKFRRD-AKTELQEWAHAKFGVT 172
           + +LI A+Y   G   A T + K++  RA     +   + + D  +  L           
Sbjct: 201 MHALIGAVYQHKGPHAARTLIHKHFLSRATDVQSIVEAQLKMDKPRKLLAITCKNLKKPK 260

Query: 173 PEYKVTFRSGPDHDP-RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           P  ++   +G       F V V        +G   S + AEQ A  + L +
Sbjct: 261 PISRLLGETGRLSSRSVFLVGVYCGIEKIGEGYGSSIKMAEQRACIDALSK 311


>gi|296422379|ref|XP_002840738.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636961|emb|CAZ84929.1| unnamed protein product [Tuber melanosporum]
          Length = 524

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 84/223 (37%), Gaps = 37/223 (16%)

Query: 21  SLLEKALTHSSISHSY--------QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            L ++A TH S             Q+ YERLEFLGD  L  + S +L+N F   +EG LS
Sbjct: 274 ELRQQAFTHKSFIKGEDAGLPGIEQQHYERLEFLGDSYLQSITSRILYNRFSKLREGPLS 333

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSD---------LRKDVCSFMT----SIQADVV 119
                LV+    S  A        +R S           +     ++         AD  
Sbjct: 334 DMRQQLVANRPLSTYATIYRFHDKVRESKGQNTAAPVALVHNSRGTYKDMGVNKTLADCF 393

Query: 120 ESLIAALYLDG--GIEVAGTFVDKYWKQRALKS-------GKFRRDAKTELQEWAHAKFG 170
           E+ IAA+ LD   G+++A  ++ + ++ +  +        G   + AK  L         
Sbjct: 394 EAYIAAIVLDSPNGVDIAQRWLTELFEPKLKEMETQHASVGPVDKMAKQTLNTIV-GGNR 452

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISG-----LAPAQGMDCSK 208
            T EY  T   G  +   + + V ++G          G   +K
Sbjct: 453 ATVEYVWTDGEG-GNKGGYWITVYLTGWGFNKREIGSGWGNNK 494


>gi|259485853|tpe|CBF83228.1| TPA: Dicer-like protein 2 [Includes Endoribonuclease dcl2(EC
            3.1.26.-);ATP-dependent helicase dcl2(EC 3.6.1.-)]
            [Source:UniProtKB/Swiss-Prot;Acc:P0C5H7] [Aspergillus
            nidulans FGSC A4]
          Length = 1269

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 92/246 (37%), Gaps = 81/246 (32%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNH 62
            ++   LE  IGY F +++LL +ALTH S  +    +SY+RLEFLGD +L +LI  L+  H
Sbjct: 894  IQQENLENHIGYTFKDKTLLMEALTHPSCPYDTSIQSYQRLEFLGDAVLDMLIVDLIRAH 953

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVA------------------------------RELD 92
                ++GE++   +++V+    + +                               + L 
Sbjct: 954  HVECQQGEMTKIKHAIVNGHLLAFLCMQFKWAMPSPLTPSIDTGTETETEIISPPPKTLS 1013

Query: 93   LASFIRVS------------SDLRKDVCSFM---TSIQ---------------------- 115
            L S++R S            S     +        SI                       
Sbjct: 1014 LYSYLRYSPSRPLPLHVEPESGSSNALTRHNLLCPSILHALNNTTAYPWSLFSAIHADKF 1073

Query: 116  -ADVVESLIAALYLDGG--IEVAGTFVDKY----WKQRALKSGKFRRDAKT-----ELQE 163
             +DVVES+I A+++D G  +     F+++       +R L          T     ELQ+
Sbjct: 1074 FSDVVESIIGAIFVDSGGDLGACAGFIERLGLVRIAKRILDERVDVTHP-TQRAQIELQK 1132

Query: 164  WAHAKF 169
             A    
Sbjct: 1133 LAARLG 1138



 Score = 90.5 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 17/156 (10%)

Query: 15  YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
             F +   +  A+T           Y+R EF GD +L   ++  LF +  +  EG L+  
Sbjct: 725 IQFQDLRHVITAITMP--LAQAPTDYQRYEFFGDSVLKFTVAASLFYNNPNWHEGYLTET 782

Query: 75  FNSLVSAETCSQVARELDLASFI-------------RVSSDLRKDVCSFMTS--IQADVV 119
            ++LV     ++ A +  L ++I              +S  L     +   S  + ADVV
Sbjct: 783 LHALVQNARLTRAALDQGLDAYIISNRFTPRKWSAPLISEKLYASASTRSMSAKVLADVV 842

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
           E+LI A Y+DGG+  A + + ++  +  L   K  R
Sbjct: 843 EALIGAAYIDGGLHKAQSCIVRFLPEIELPETKLPR 878


>gi|255720468|ref|XP_002556514.1| KLTH0H15180p [Lachancea thermotolerans]
 gi|238942480|emb|CAR30652.1| KLTH0H15180p [Lachancea thermotolerans]
          Length = 494

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 52/236 (22%), Positives = 86/236 (36%), Gaps = 29/236 (12%)

Query: 16  AFANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSA 66
              N ++  +   H S+ +           +   ERLEFLGD IL   I+ +L+N F   
Sbjct: 191 EIKNSAIKARVFIHKSMINDKLYLSEHDMIKAHNERLEFLGDSILNTTITMILYNKFPHL 250

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD---LRKDVCSFMTSIQADVVESLI 123
            EG+LS     L+S E   + +        +R + D      D       + ADV E+ I
Sbjct: 251 SEGQLSKLRMKLISNERLKKWSFLYKFNEKLRTNLDKTCENNDFKHGKQKLYADVFEAYI 310

Query: 124 AALYLD---GGIEVAGTFV---------DKYWKQRALKSGKFRRDAKTELQEWAHAKFGV 171
             L  D     +     ++         +++ K   L   +   +AK  L         +
Sbjct: 311 GGLIEDDPKHNLPKVRKWLSKLASPVIEEEFKKDDDLDVNEVDINAKKTLYSLI-GYAAL 369

Query: 172 TPEYKVTFR-SGPDHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
              YK   + S  D +    V   I  G     G   + + A   AA +VL+ + +
Sbjct: 370 NLHYKPIQKPSSEDSNAL--VECRIKDGTVLGVGKGRNIKIAGMRAAQQVLQNKPL 423


>gi|195124758|ref|XP_002006854.1| GI21295 [Drosophila mojavensis]
 gi|193911922|gb|EDW10789.1| GI21295 [Drosophila mojavensis]
          Length = 1728

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 1/96 (1%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  LEK +GY F +R+ L +ALTH S  ++     Y+ LEF+GD IL  LIS  +F H
Sbjct: 1438 INHQYLEKNLGYTFCDRAYLLQALTHPSNPTNRLTGCYQELEFIGDAILDFLISAYIFEH 1497

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
                  G+L+   ++LV+  T + +        FI 
Sbjct: 1498 KTRMTPGQLTDLRSALVNNTTLACICVRHRFHFFIL 1533



 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 17/121 (14%)

Query: 110  FMTSIQADVVESLIAALYLDG-GIEVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHA 167
             +     DV+E+LIAA+YLD   +      V K ++   L+ S     +   +L E    
Sbjct: 1613 DVPKALGDVLEALIAAVYLDCRDLNTTWQVVYKLFEPELLEFSRNVPLNPIRQLFE---- 1668

Query: 168  KFGVTPEYKVTFRSGP--DHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                 P +     S P  D++    V  +           G   + + A+  AA   L++
Sbjct: 1669 HKLAKPTF-----SSPVMDNNQV-MVTCQFICMDKTIKVYGFGNNGKQAKLSAAKHALQK 1722

Query: 223  E 223
             
Sbjct: 1723 L 1723



 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 25/59 (42%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
              ER E LGD  L L  +  L N +    EG L+   ++LVS         E D+   I
Sbjct: 1215 DMERFELLGDCFLKLSATLYLANRYPDWNEGILTQVKSTLVSNRNLLYCLSETDIPQRI 1273


>gi|50312305|ref|XP_456185.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49645321|emb|CAG98893.1| KLLA0F24816p [Kluyveromyces lactis]
          Length = 478

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 85/234 (36%), Gaps = 31/234 (13%)

Query: 16  AFANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSA 66
              N  +  +   H S+ +           +   ERLEFLGD IL   ++T+++N F   
Sbjct: 197 KIKNPVIRARVFIHKSMINDKLYLTDQEIIRSHNERLEFLGDSILNTTMTTIIYNKFPHF 256

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG+LS     L++ E   + +        ++  +    D       + ADV E+ I  L
Sbjct: 257 DEGQLSQLRMRLINNELLKEWSFLYKFPDELKTHNVKPDDNKDGKQKLYADVFEAYIGGL 316

Query: 127 YLDGG---IEVAGTFVDKYWKQRA----------LKSGKFRRDAKT---ELQEWAHAKFG 170
             D G   +     ++ K  +               + +   +AK     L  +A     
Sbjct: 317 VEDNGKKNLPKIRKWLAKLAEPVISKGLNSDITLENTTEVDVNAKKTLYSLIGYAALNLH 376

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             P +K T       DP   V   I  G    +G+  + + A   AA +VL  +
Sbjct: 377 YYPVHKPTST-----DPNAIVECRITGGKVLGRGVGKNIKIAGMRAAEDVLNNK 425


>gi|83772763|dbj|BAE62891.1| unnamed protein product [Aspergillus oryzae]
          Length = 1374

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 21/141 (14%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDS 65
             +E+++GY F    LL  A TH S   ++ +   Y+RLEFLGD +L ++    LF  +  
Sbjct: 1155 KVEEKLGYRFKYPRLLHSAFTHPSYPSTWAKVPCYQRLEFLGDSLLDMVCVDDLFYRYPD 1214

Query: 66   AKEGELSVRF------------------NSLVSAETCSQVARELDLASFIRV-SSDLRKD 106
                 L+                      ++VS +    +A +L L + +R  S+ L+  
Sbjct: 1215 KDPQWLTEHKVSVRLFVSTKHLLTITLQMAMVSNKFLGALAVKLGLHTHLRHFSNPLQSQ 1274

Query: 107  VCSFMTSIQADVVESLIAALY 127
            +  +   IQA   ES  A  Y
Sbjct: 1275 ITHYAEEIQAAENESQGAVDY 1295



 Score = 68.6 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 50/147 (34%), Gaps = 34/147 (23%)

Query: 20   RSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
                 +A T        H      +     ++YERLEFLGD  L +  S  LF       
Sbjct: 957  PEYALEAFTKDSDNTEEHRVQQIHVQRGMGKNYERLEFLGDCFLKMATSISLFVQNPDDD 1016

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASF-----------------IRVSSDLRKDVCSF 110
            E +  V    L+  +     A + +L  +                 +    D RK + + 
Sbjct: 1017 EFDFHVNRMCLICNKNLFNTALKKELYQYTRSRGFSRHTWYPDGLTLLHGRDHRKKISAE 1076

Query: 111  -----MTSIQADVVESLIAALYLDGGI 132
                      ADV E+LI A  L GG+
Sbjct: 1077 SKHALREKTVADVCEALIGASLLSGGL 1103


>gi|158706440|sp|P0C5H7|DCL2_EMENI RecName: Full=Dicer-like protein 2; Includes: RecName:
            Full=Endoribonuclease dcl2; Includes: RecName:
            Full=ATP-dependent helicase dcl2
          Length = 1429

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 92/246 (37%), Gaps = 81/246 (32%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNH 62
            ++   LE  IGY F +++LL +ALTH S  +    +SY+RLEFLGD +L +LI  L+  H
Sbjct: 1054 IQQENLENHIGYTFKDKTLLMEALTHPSCPYDTSIQSYQRLEFLGDAVLDMLIVDLIRAH 1113

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVA------------------------------RELD 92
                ++GE++   +++V+    + +                               + L 
Sbjct: 1114 HVECQQGEMTKIKHAIVNGHLLAFLCMQFKWAMPSPLTPSIDTGTETETEIISPPPKTLS 1173

Query: 93   LASFIRVS------------SDLRKDVCSFM---TSIQ---------------------- 115
            L S++R S            S     +        SI                       
Sbjct: 1174 LYSYLRYSPSRPLPLHVEPESGSSNALTRHNLLCPSILHALNNTTAYPWSLFSAIHADKF 1233

Query: 116  -ADVVESLIAALYLDGG--IEVAGTFVDKY----WKQRALKSGKFRRDAKT-----ELQE 163
             +DVVES+I A+++D G  +     F+++       +R L          T     ELQ+
Sbjct: 1234 FSDVVESIIGAIFVDSGGDLGACAGFIERLGLVRIAKRILDERVDVTHP-TQRAQIELQK 1292

Query: 164  WAHAKF 169
             A    
Sbjct: 1293 LAARLG 1298



 Score = 90.5 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 17/156 (10%)

Query: 15   YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
              F +   +  A+T           Y+R EF GD +L   ++  LF +  +  EG L+  
Sbjct: 885  IQFQDLRHVITAITMP--LAQAPTDYQRYEFFGDSVLKFTVAASLFYNNPNWHEGYLTET 942

Query: 75   FNSLVSAETCSQVARELDLASFI-------------RVSSDLRKDVCSFMTS--IQADVV 119
             ++LV     ++ A +  L ++I              +S  L     +   S  + ADVV
Sbjct: 943  LHALVQNARLTRAALDQGLDAYIISNRFTPRKWSAPLISEKLYASASTRSMSAKVLADVV 1002

Query: 120  ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
            E+LI A Y+DGG+  A + + ++  +  L   K  R
Sbjct: 1003 EALIGAAYIDGGLHKAQSCIVRFLPEIELPETKLPR 1038


>gi|158705874|sp|A4RHU9|DCL2_MAGO7 RecName: Full=Dicer-like protein 2; Includes: RecName:
            Full=Endoribonuclease DCL2; Includes: RecName:
            Full=ATP-dependent helicase DCL2
          Length = 1485

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 66/300 (22%), Positives = 111/300 (37%), Gaps = 85/300 (28%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
            LE+ +GY+F  +SLL +A+TH+S +   S   S ERLEFLGD +L  ++   LF+  D A
Sbjct: 1171 LEELLGYSFNKKSLLIEAITHASYNIPGSAGSSLERLEFLGDSVLDFVVVARLFSVKDPA 1230

Query: 67   KEGE--LSVRFNSLVSAETCSQVARE-----------------------------LDLAS 95
                  + +   ++V+ E    +A E                             L L  
Sbjct: 1231 PIEHYNMHLLRTAVVNGEFLGFLAMEWRTAATQRSVVVRTGQGTADELETVETPGLPLFG 1290

Query: 96   FIRVSSD---------------LRKDVCS-----------------FMTSIQADVVESLI 123
            F+R ++                                         ++ + +DV+E++I
Sbjct: 1291 FLRHNASGDWVRDQQLAEERHAEMAPGIRDALEHGQRYPWDLLARLRISKVHSDVLEAVI 1350

Query: 124  AALYLDGG-IEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAH-----------A 167
             A+++D G +E     +++     +  RAL+ G      K EL   A             
Sbjct: 1351 GAVWVDSGSLEECEKLIERVGILRYLDRALRDGVKILHPKEELGRVAQNNKVVYKVDKAK 1410

Query: 168  KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKREGIW 226
            +      Y+V+       D  F   V +     A+ G   SK  A   AA EV++   +W
Sbjct: 1411 RAARAEVYEVSGELAEGEDVEFLCSVTVGDRCVARVGGAVSKNDAMTKAALEVIR---VW 1467



 Score = 85.5 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 15/136 (11%)

Query: 17   FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
            F +  L+   +T SS       +YER+EFLGD +L L  +     +     EG LS+  +
Sbjct: 1002 FKDIDLVMMVITSSSAGRLT--NYERVEFLGDAVLKLGAAVTCATNNLHFPEGYLSLLKD 1059

Query: 77   SLVSAETCSQVARELDLASFIR------------VSSDLRKDVCSFMTS-IQADVVESLI 123
             LVS     + A  L L  FI             +++         M+S   ADV E+LI
Sbjct: 1060 RLVSNSRLCKAATALGLDQFIITRQYSLKQWRNMLTAPEPPTNTRKMSSKTLADVTEALI 1119

Query: 124  AALYLDGGIEVAGTFV 139
             A Y++GG+  A   +
Sbjct: 1120 GAAYIEGGMSKALRCI 1135


>gi|145612483|ref|XP_367242.2| hypothetical protein MGG_12357 [Magnaporthe oryzae 70-15]
 gi|145019642|gb|EDK03870.1| hypothetical protein MGG_12357 [Magnaporthe oryzae 70-15]
          Length = 1386

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 66/300 (22%), Positives = 111/300 (37%), Gaps = 85/300 (28%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
            LE+ +GY+F  +SLL +A+TH+S +   S   S ERLEFLGD +L  ++   LF+  D A
Sbjct: 1072 LEELLGYSFNKKSLLIEAITHASYNIPGSAGSSLERLEFLGDSVLDFVVVARLFSVKDPA 1131

Query: 67   KEGE--LSVRFNSLVSAETCSQVARE-----------------------------LDLAS 95
                  + +   ++V+ E    +A E                             L L  
Sbjct: 1132 PIEHYNMHLLRTAVVNGEFLGFLAMEWRTAATQRSVVVRTGQGTADELETVETPGLPLFG 1191

Query: 96   FIRVSSD---------------LRKDVCS-----------------FMTSIQADVVESLI 123
            F+R ++                                         ++ + +DV+E++I
Sbjct: 1192 FLRHNASGDWVRDQQLAEERHAEMAPGIRDALEHGQRYPWDLLARLRISKVHSDVLEAVI 1251

Query: 124  AALYLDGG-IEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAH-----------A 167
             A+++D G +E     +++     +  RAL+ G      K EL   A             
Sbjct: 1252 GAVWVDSGSLEECEKLIERVGILRYLDRALRDGVKILHPKEELGRVAQNNKVVYKVDKAK 1311

Query: 168  KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKREGIW 226
            +      Y+V+       D  F   V +     A+ G   SK  A   AA EV++   +W
Sbjct: 1312 RAARAEVYEVSGELAEGEDVEFLCSVTVGDRCVARVGGAVSKNDAMTKAALEVIR---VW 1368



 Score = 85.5 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 15/136 (11%)

Query: 17   FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
            F +  L+   +T SS       +YER+EFLGD +L L  +     +     EG LS+  +
Sbjct: 903  FKDIDLVMMVITSSSAGRLT--NYERVEFLGDAVLKLGAAVTCATNNLHFPEGYLSLLKD 960

Query: 77   SLVSAETCSQVARELDLASFIR------------VSSDLRKDVCSFMTS-IQADVVESLI 123
             LVS     + A  L L  FI             +++         M+S   ADV E+LI
Sbjct: 961  RLVSNSRLCKAATALGLDQFIITRQYSLKQWRNMLTAPEPPTNTRKMSSKTLADVTEALI 1020

Query: 124  AALYLDGGIEVAGTFV 139
             A Y++GG+  A   +
Sbjct: 1021 GAAYIEGGMSKALRCI 1036


>gi|158706448|sp|Q0UI93|DCL1_PHANO RecName: Full=Dicer-like protein 1; Includes: RecName:
            Full=Endoribonuclease DCL1; Includes: RecName:
            Full=ATP-dependent helicase DCL1
          Length = 1522

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 54/255 (21%), Positives = 84/255 (32%), Gaps = 39/255 (15%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
              +E +  Y F    LL  A  H S         SY+RLEFLGD +L +     LF  + 
Sbjct: 1223 HKIEMKHPYRFRYPRLLRSAFIHPSQPFMWENIPSYQRLEFLGDSLLDMAFIMHLFYKYP 1282

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR----------------VSSDLRKDVC 108
                  L+     +VS +    V  +L   + ++                V    R+   
Sbjct: 1283 DKDPQWLTEHKTPMVSNKFLGAVCVKLGWHTHMKQNTAILSSQIRDYVYEVEEAEREANG 1342

Query: 109  --------SFMTSIQADVVESLIAALYLDG--GIEVAGTFVDKYWKQRALKS------GK 152
                    S      ADV+E+ +AA+++D      V   F D + K   L          
Sbjct: 1343 AVDYWVSVSEPPKCLADVIEAFVAAIFVDSEFDFNVVQKFFDLHLKPFFLDMTLDAYENF 1402

Query: 153  FRRDAKTELQEWAHAKFGVTPEYKV----TFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
                  T L       FG + E+++    T    P        +V I        +  S 
Sbjct: 1403 ASNHPTTRLSRLLSINFGCS-EWRMGALETETLIPGKGKAIAAMVMIHDKVHFHSLGQSG 1461

Query: 209  RAAEQVAAAEVLKRE 223
            R A   A+   L++ 
Sbjct: 1462 RYARVRASHAALEKL 1476



 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 49/146 (33%), Gaps = 37/146 (25%)

Query: 20   RSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             +L  +ALT  S                   +YERLEFLGD  L +  S  +F       
Sbjct: 1018 PALALEALTKDSDNSEEHGEEKINFKSGMGPNYERLEFLGDCFLKVATSLSVFVQQPEEN 1077

Query: 68   EGELSVRFNSLVSAETCSQVAR-ELDLASFIRV-----------------SSDLRKD--- 106
            E E  VR   ++  +   + A  +  L  ++R                     L+K    
Sbjct: 1078 EFEFHVRRMLMLCNQNLMETAVGKKKLYKYVRTDAFSRRNWYPEGLKLLRGKGLKKTEED 1137

Query: 107  ----VCSFMTSIQADVVESLIAALYL 128
                  +      ADV E+ I A ++
Sbjct: 1138 WLNVTHNLGDKSVADVCEAFIGAAFM 1163


>gi|167046022|gb|ABZ10542.1| dicer-like protein B [Placozoa sp. DMJ-2008]
          Length = 357

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 39/178 (21%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLIST 57
           +A     LE  +GY+F +R LL  ALTH++ +H       E Y+RLEFLGD IL  ++  
Sbjct: 180 NAHNLKDLEAVLGYSFKDRKLLISALTHATYNHNRIAEGVECYQRLEFLGDAILQYIVVR 239

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI-------------------- 97
             ++  ++ K  +L     + +  E+ + +     +  +                     
Sbjct: 240 HCYHANNNYKPADLHDFVEASLQNESLAAMTMVYGIHKYFFYNSPSLFSQINQLLQIVDT 299

Query: 98  ------RVSSDLRKDV-------CSFMTSIQADVVESLIAALYLDGG--IEVAGTFVD 140
                 R+S++ +  V          +     D+ ESLI A+++D G  IEV    V 
Sbjct: 300 NEECEQRLSTEEKALVYSNSLKDGVMIPKPLGDLFESLIGAIFIDCGRSIEVVNDLVL 357



 Score = 51.6 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 2/74 (2%)

Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
          KALT +  +  +  + E LEFLG   L   +S   F  +    EG+LS   + +VS E  
Sbjct: 2  KALTLARANDDF--NLETLEFLGGSYLKYAVSISFFLSYSKFHEGQLSSLKSKIVSNENL 59

Query: 85 SQVARELDLASFIR 98
           Q+  ++ L  +I 
Sbjct: 60 YQIGIKMGLPGYII 73


>gi|167046020|gb|ABZ10541.1| dicer-like protein B [Trichoplax adhaerens]
          Length = 357

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 39/178 (21%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLIST 57
           +A     LE  +GY+F +R LL  ALTH++ +H       E Y+RLEFLGD IL  ++  
Sbjct: 180 NAHNLKDLEAVLGYSFKDRKLLISALTHATYNHNRIAEGVECYQRLEFLGDAILQYIVVR 239

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI-------------------- 97
             ++  ++ K  +L     + +  E+ + +     +  +                     
Sbjct: 240 HCYHANNNYKPADLHDFVEASLQNESLAVMTMVYGIHKYFFYNSPSLFSQINQLLQIVDT 299

Query: 98  ------RVSSDLRKDV-------CSFMTSIQADVVESLIAALYLDGG--IEVAGTFVD 140
                 R+S++ +  V          +     D+ ESLI A+++D G  IEV    V 
Sbjct: 300 NEECEQRLSTEEKALVYSNSLKDGVMIPKPLGDLFESLIGAIFIDCGRSIEVVNDLVL 357



 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
          KALT +  +  +  + E LEFLGD  L   +S   F  +    EG+LS   + +VS E  
Sbjct: 2  KALTLARANDDF--NLETLEFLGDSYLKYAVSISFFLSYSKFHEGQLSSLKSKIVSNENL 59

Query: 85 SQVARELDLASFIR 98
           Q+  ++ L  +I 
Sbjct: 60 YQIGIKMGLPGYII 73


>gi|156845983|ref|XP_001645880.1| hypothetical protein Kpol_1045p6 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156116550|gb|EDO18022.1| hypothetical protein Kpol_1045p6 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 478

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 54/236 (22%), Positives = 86/236 (36%), Gaps = 28/236 (11%)

Query: 16  AFANRSLLEKALTHSSI---------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
              + S+  K   H S          S       ERLEFLGD +L  +++ +++N F + 
Sbjct: 192 EIKDPSIRAKVFIHKSTIKDKLYLKESEMINAHNERLEFLGDSVLNTIMTMIIYNKFPTF 251

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF---MTSIQADVVESLI 123
            EG+LS    +LVS E         +    ++ + DL  D   F      + ADV E+ I
Sbjct: 252 TEGQLSKLRMNLVSNERIKSWTYLYNFDKKLKTNFDLGNDKSHFQNGKQKLYADVFEAYI 311

Query: 124 AALYLD---GGIEVAGTFVDKYWKQRALK----------SGKFRRDAKTELQEWAHAKFG 170
             L  D     +     ++ K  K    +          +     +AK +L         
Sbjct: 312 GGLIEDDPKHNMPKVRKWLTKLSKPIINEVMQKDVSLETTENIDLNAKRQLYSII-GYAA 370

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           +   Y+   R   D DP   V   I  G     G   + + A   AA  VL+ + +
Sbjct: 371 LNLHYEPVKRPTRD-DPISIVECRIDDGTVLGVGKGRNVKIAGLCAAQNVLRNKSL 425


>gi|224613107|dbj|BAH24216.1| dsRNA-specific ribonuclease RNaseIII [Onion yellows phytoplasma]
          Length = 149

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 3/118 (2%)

Query: 90  ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK 149
            ++L +++ +     K+      SI AD  E+L  A+YLD G   A            L 
Sbjct: 1   NIELQNYLLLGKGE-KNKDFNAKSIMADTFEALFGAIYLDLGYLTAKKVFHNIVLPH-LA 58

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              +  D KT+LQE   ++   T +YK+    GP H   F   V +       G   +
Sbjct: 59  KTIYIIDFKTQLQEIVQSEKK-TIQYKIVQEQGPAHSKNFVAEVYLEKNLLGTGEGST 115


>gi|241061224|ref|XP_002408099.1| dicer-1, putative [Ixodes scapularis]
 gi|215492368|gb|EEC02009.1| dicer-1, putative [Ixodes scapularis]
          Length = 1348

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 56/108 (51%), Gaps = 2/108 (1%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             + +E+ +GY F +RS L +A+TH+S   +   + Y+RLEFLGD ++  L++  L+    
Sbjct: 1066 VADVERALGYTFVDRSFLLQAVTHASYYRNRLTDCYQRLEFLGDAVIDYLVTRYLYELPR 1125

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-SSDLRKDVCSFM 111
                G+L+   +SLV+    + +  +  L    +  +  L   +  F+
Sbjct: 1126 KFNPGQLTDLRSSLVNNTFFASLVVKYGLHGCFKHCNPSLFSAIGRFV 1173



 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 47/121 (38%), Gaps = 26/121 (21%)

Query: 111  MTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168
            +     D+ ESL+ A++LD G+  +     + + + Q                  ++   
Sbjct: 1237 VPKALGDLFESLMGAVFLDCGMSLDRVWRIIYRMFGQEIES--------------FSQ-N 1281

Query: 169  FGVTPEYKVTF-----RSGPD---HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
              V P  ++T      R GP     + +  V + ++G   +  +  +K+ A+   A + L
Sbjct: 1282 VPVPPVKELTERFRDARFGPAELLGNNKVKVQLTVTGKTFSC-VAKNKKLAKMALAKKCL 1340

Query: 221  K 221
            +
Sbjct: 1341 R 1341


>gi|78126079|dbj|BAE47000.1| ribonuclease III [Ehrlichia ruminantium]
          Length = 92

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 51/92 (55%)

Query: 84  CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143
             ++A+ ++L  FI +S   R    +  ++   + +E+LI A+YLDGG++ A  F+  +W
Sbjct: 1   LVEIAQSINLGIFIIMSDGERSCGGANNSNNLENALEALIGAIYLDGGLKAAKDFIFLFW 60

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
           K  A       +DAKT LQEWA +K    P Y
Sbjct: 61  KNSATHMKVPPQDAKTILQEWAQSKGFPAPSY 92


>gi|145612491|ref|XP_001412113.1| hypothetical protein MGG_07167 [Magnaporthe oryzae 70-15]
 gi|145019646|gb|EDK03874.1| hypothetical protein MGG_07167 [Magnaporthe oryzae 70-15]
          Length = 819

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 66/300 (22%), Positives = 111/300 (37%), Gaps = 85/300 (28%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LE+ +GY+F  +SLL +A+TH+S +   S   S ERLEFLGD +L  ++   LF+  D A
Sbjct: 505 LEELLGYSFNKKSLLIEAITHASYNIPGSAGSSLERLEFLGDSVLDFVVVARLFSVKDPA 564

Query: 67  KEGE--LSVRFNSLVSAETCSQVARE-----------------------------LDLAS 95
                 + +   ++V+ E    +A E                             L L  
Sbjct: 565 PIEHYNMHLLRTAVVNGEFLGFLAMEWRTAATQRSVVVRTGQGTADELETVETPGLPLFG 624

Query: 96  FIRVSSD---------------LRKDVCS-----------------FMTSIQADVVESLI 123
           F+R ++                                         ++ + +DV+E++I
Sbjct: 625 FLRHNASGDWVRDQQLAEERHAEMAPGIRDALEHGQRYPWDLLARLRISKVHSDVLEAVI 684

Query: 124 AALYLDGG-IEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAH-----------A 167
            A+++D G +E     +++     +  RAL+ G      K EL   A             
Sbjct: 685 GAVWVDSGSLEECEKLIERVGILRYLDRALRDGVKILHPKEELGRVAQNNKVVYKVDKAK 744

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKREGIW 226
           +      Y+V+       D  F   V +     A+ G   SK  A   AA EV++   +W
Sbjct: 745 RAARAEVYEVSGELAEGEDVEFLCSVTVGDRCVARVGGAVSKNDAMTKAALEVIR---VW 801



 Score = 84.4 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 15/136 (11%)

Query: 17  FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           F +  L+   +T SS       +YER+EFLGD +L L  +     +     EG LS+  +
Sbjct: 336 FKDIDLVMMVITSSSAGRLT--NYERVEFLGDAVLKLGAAVTCATNNLHFPEGYLSLLKD 393

Query: 77  SLVSAETCSQVARELDLASFIR------------VSSDLRKDVCSFMTS-IQADVVESLI 123
            LVS     + A  L L  FI             +++         M+S   ADV E+LI
Sbjct: 394 RLVSNSRLCKAATALGLDQFIITRQYSLKQWRNMLTAPEPPTNTRKMSSKTLADVTEALI 453

Query: 124 AALYLDGGIEVAGTFV 139
            A Y++GG+  A   +
Sbjct: 454 GAAYIEGGMSKALRCI 469


>gi|320586295|gb|EFW98974.1| nucleolar rnase [Grosmannia clavigera kw1407]
          Length = 372

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 78/242 (32%), Gaps = 46/242 (19%)

Query: 24  EKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           + ALTH  +       SYE  EFLGD  +  L S  +   F     G  S     L+   
Sbjct: 102 KMALTHQGMVEKNWHRSYEVFEFLGDAFIYHLASEYISQTFPLLSPGRCSQIRERLLRNS 161

Query: 83  TCSQVARELDLASFIRVS---SDLRKDVCSF-----MTSIQADVVESLIAALYLD--GGI 132
             S  +    L    ++        +D  S         +  D+ E+ + AL      G+
Sbjct: 162 NLSLYSLHYGLDKRAKLPAEFKGEGRDGGSRARLEQRNKMYGDLFEAYVGALIRSDPQGV 221

Query: 133 EVAGTFVDKYWK---QRALKSGKFRRD-----------------------AKTELQEWAH 166
           E A  ++ + W    ++ ++    RRD                        K +L +   
Sbjct: 222 ERAQKWLKRLWALTIEKDIREEYQRRDKERARNPSLESSATGPEHTSERPPKLKLIDLI- 280

Query: 167 AKFGVTPEYK---VTFRSGPD-HDPRFTVVVEISG----LAPAQGMDCSKRAAEQVAAAE 218
               V   Y+      R   D   P F + + + G         G   SK+ A   AA +
Sbjct: 281 GCKLVKIRYEDAPCKPRKCKDTGLPLFVIDLWVDGWGKSECLGHGSGLSKKDAGSNAAQQ 340

Query: 219 VL 220
            L
Sbjct: 341 AL 342


>gi|300868242|ref|ZP_07112873.1| hypothetical protein OSCI_3600020 [Oscillatoria sp. PCC 6506]
 gi|300333766|emb|CBN58057.1| hypothetical protein OSCI_3600020 [Oscillatoria sp. PCC 6506]
          Length = 328

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 59/170 (34%), Gaps = 11/170 (6%)

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
             S    E S     L              L + +   S   ++          + +E L
Sbjct: 155 HPSVSSAEESRIREKLAEILKLLPFQNACLLNTALTHRSYFYENPKYVRED--NERLEFL 212

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKF--------RRDAKTELQEWAHAKFG-VTP 173
             A++LD GI+    F++  +++   +   F          D+K   QEW  A      P
Sbjct: 213 GDAVFLDSGIDSVREFIEPLFEKAIKEPAAFNFNLESKNFVDSKNRFQEWVQANSDNTPP 272

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +Y      G  H P +   V +      +G   SK+ AE+ AA + L R 
Sbjct: 273 KYVTIHAGGAPHKPEYLAKVYVGEKLYGEGKGSSKKEAEKNAAEDALARL 322



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 6/52 (11%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRIL 51
            + + + K +   F N  LL  ALTH S  +      +E  ERLEFLGD + 
Sbjct: 168 EKLAEILKLL--PFQNACLLNTALTHRSYFYENPKYVREDNERLEFLGDAVF 217


>gi|224613114|dbj|BAH24222.1| dsRNA-specific ribonuclease RNaseIII [Mulberry dwarf phytoplasma]
          Length = 157

 Score =  105 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 3/126 (2%)

Query: 82  ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141
            +    A+ ++L +++ +     K+      SI AD  E+L  A+YLD G   A      
Sbjct: 1   RSLIIYAQNIELQNYLLLGKGE-KNKDFNAKSIMADTFEALFGAIYLDLGYLTAKKVFHN 59

Query: 142 YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201
                 L    +  D KT+LQE   ++   T +YK+    G  H   F   V +      
Sbjct: 60  IVLPH-LAKTIYIIDFKTQLQEIVQSEKK-TIQYKIVQEQGFAHSKNFVAEVYLEKNLLG 117

Query: 202 QGMDCS 207
            G   +
Sbjct: 118 TGEGNT 123


>gi|167046024|gb|ABZ10543.1| dicer-like protein C [Trichoplax adhaerens]
          Length = 358

 Score =  105 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 35/167 (20%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTLLFNH 62
               LEK IGY+F N+  + +ALTHSS  H     ES ++LEFLGD IL  +I+   FN 
Sbjct: 187 NLERLEKVIGYSFQNKLFMIRALTHSSYHHHDIAIESNQKLEFLGDTILQYIIARHFFNS 246

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSF----------- 110
              AK  +L     ++V+ +  + +   + ++ ++ + S DL +D+  F           
Sbjct: 247 HPDAKPAKLHDFQEAIVNNKCLAVIGIAIGVSKYVFQESPDLFRDIDQFAKIITCDYMID 306

Query: 111 ---------------------MTSIQADVVESLIAALYLDGGIEVAG 136
                                +    +DVVE+LI A+Y+D G  +A 
Sbjct: 307 DEMNYNDRTEALFENFTEEVKIPKPVSDVVEALIGAIYIDTGESIAE 353



 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 23 LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
          L +ALT +        S ERLEFLGD  L  +I+  LF       EG+L+     +V  +
Sbjct: 1  LLEALTLAEAEDDI--SLERLEFLGDSFLKFIIAANLFISHPKYHEGQLTNELTKIVRND 58

Query: 83 TCSQVARELDLASFIR 98
             ++ +   +  +I 
Sbjct: 59 NLLKLGKSTPICEYII 74


>gi|326428784|gb|EGD74354.1| hypothetical protein PTSG_06363 [Salpingoeca sp. ATCC 50818]
          Length = 333

 Score =  105 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 70/230 (30%), Gaps = 29/230 (12%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               L  R G  F +  LL +ALTH +          RL  LG+ +L   +   L+ +F 
Sbjct: 52  EIRALAARTGEKFKDEKLLLQALTHRTY--DGYAHNGRLSLLGETVLSQSVVEHLYFNFP 109

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC--------SFMTSIQA 116
           +     +    +  +SA+    + R+L     +        +          +       
Sbjct: 110 NLYSTAIKSVRDRFLSADVLGPIGRKLGFQDALLYKHAEEGEAVKAAKPFEHNKRAKYHV 169

Query: 117 D--------------VVESLIAALYLDGG----IEVAGTFVDKYWKQRALKSGKFRRDAK 158
           D                ++ + ALY+D G          FV    +   L         +
Sbjct: 170 DPVPPQKIPASAVAAAFKAFVGALYVDQGALQAKRYVKDFVVHTLENSDLSEFIKLEHPR 229

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPD-HDPRFTVVVEISGLAPAQGMDCS 207
             LQ    A       Y+V   SG   H P F V V       A G   S
Sbjct: 230 RVLQRLHAASGREPLAYRVIEESGRATHMPTFLVGVFAGNQKLATGAGYS 279


>gi|85105148|ref|XP_961898.1| hypothetical protein NCU08270 [Neurospora crassa OR74A]
 gi|74616659|sp|Q7S8J7|DCL1_NEUCR RecName: Full=Dicer-like protein 1; Includes: RecName:
            Full=Endoribonuclease dcl-1; Includes: RecName:
            Full=ATP-dependent helicase dcl-1
 gi|28923482|gb|EAA32662.1| predicted protein [Neurospora crassa OR74A]
          Length = 1584

 Score =  105 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 73/200 (36%), Gaps = 47/200 (23%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
                +R+GY F +  LL  A  H +    +    SY+RLEFLGD +  ++    LF  F 
Sbjct: 1259 KKFSERMGYKFKHPRLLRAAFQHPTYPSLYERLPSYQRLEFLGDALFDMVAVDYLFRKFP 1318

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDVCSFMTSI--------- 114
            +A    L+    ++VS +    ++  L     I  +S  + KD+  ++T I         
Sbjct: 1319 AADPQWLTEHKMAMVSNQFLCCLSFHLGFNKCIATMSPSILKDIAEYVTEIEEALETAKQ 1378

Query: 115  -----------------------------QADVVESLIAALYLDG--GIEVAGTF----V 139
                                          +DVVE+ I A+++D      V   F    V
Sbjct: 1379 EAINAGKTADEYSRDYWVHITHASRLPKCLSDVVEAYIGAIFVDSEYDYSVVQNFFNMHV 1438

Query: 140  DKYWKQRALKSGKFRRDAKT 159
              +++   L      +   T
Sbjct: 1439 LPFFEDMHLYDTFANKHPVT 1458



 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 57/170 (33%), Gaps = 35/170 (20%)

Query: 11   KRIGYAFANRSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTL 58
            K +G       L  +A T  S                  ++YERLEFLGD  L +  +  
Sbjct: 1058 KLLGLDLR-PDLALEAFTKDSDNSDEHDAEKENFQTGMGDNYERLEFLGDSFLKMATTIA 1116

Query: 59   LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR---------------VSSDL 103
            ++       E E  V    L+  +     A E+ L  +IR               +    
Sbjct: 1117 IYTLIPDKGEFEYHVERMLLICNKNLFNNALEIGLEEYIRSMSFNRRQWYPEGLILKKGK 1176

Query: 104  RKDVCSFM---TSIQADVVESLIAALYLD----GGIEVAGTFVDKYWKQR 146
             KD            ADV E+LI A YL     G  ++A   V    K +
Sbjct: 1177 SKDARQRHVLADKSIADVCEALIGAAYLTGQEKGSFDMAIKAVTAMVKDK 1226


>gi|119487463|ref|XP_001262524.1| RNA helicase/RNAse III, putative [Neosartorya fischeri NRRL 181]
 gi|158705692|sp|A1D9Z6|DCL2_NEOFI RecName: Full=Dicer-like protein 2; Includes: RecName:
            Full=Endoribonuclease dcl2; Includes: RecName:
            Full=ATP-dependent helicase dcl2
 gi|119410681|gb|EAW20627.1| RNA helicase/RNAse III, putative [Neosartorya fischeri NRRL 181]
          Length = 1388

 Score =  105 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 59/280 (21%), Positives = 108/280 (38%), Gaps = 69/280 (24%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              L+  IGY F + SLL +ALTH S  + S  +SY+RLE+LGD +L ++I + +FNH   
Sbjct: 1099 ERLKDHIGYTFEDESLLVEALTHPSCDYDSTTQSYQRLEYLGDAVLDMVIVSAIFNHPIQ 1158

Query: 66   AKEGELSVRFNSLVSAETCSQVARE--------------------------LDLASFIR- 98
              +G+++   +++V+A   + +  E                          ++L  F+R 
Sbjct: 1159 RPQGDMTKIKHAVVNANLLAFLCMESATSEEKLDVAQTSKDSFAVTTSQESVELWRFMRY 1218

Query: 99   ----VSSDLRKDVCSFM--------------------------TSIQADVVESLIAALYL 128
                +++     +                                  +D+VES++ A+++
Sbjct: 1219 RGQNLNAARDASLARHRALRDEIASSLLHAPHYPWHALSRLNADKFFSDIVESVLGAIFV 1278

Query: 129  DGG--IEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
            D G  +     FV++     + +R L      R  ++  Q+ A        + +V    G
Sbjct: 1279 DSGGDLAPCEVFVERIGLMAYLRRILDQEIDVRHPRSVAQQLAKTNIQFVLQ-RVPNEEG 1337

Query: 183  PDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLK 221
                  +   V I          C +   AE  AA E +K
Sbjct: 1338 GA---SYQCSVRIEQAELFVVTGCLTAEEAEVTAAVEAIK 1374



 Score = 90.5 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 15/131 (11%)

Query: 39   SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI- 97
            +Y+R EFLGD IL   +S  LF    +  EG LS     +V     ++ A +  L ++I 
Sbjct: 952  NYQRYEFLGDSILKFSVSCQLFFQHPNWHEGYLSEGRAMIVQNPRLAKAALDTGLDAYIV 1011

Query: 98   ------------RVSSDLRKDVCSF--MTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143
                         +S  L +        T + ADVVE+LI A Y+DGG   A   + +  
Sbjct: 1012 TKRIASRKWSAPLISEKLERVPAKRQMSTKVLADVVEALIGAAYMDGGHATAQACIRRLL 1071

Query: 144  KQRALKSGKFR 154
             +  L +   R
Sbjct: 1072 PEINLHAVDTR 1082


>gi|328770756|gb|EGF80797.1| hypothetical protein BATDEDRAFT_24696 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 1641

 Score =  105 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 57/264 (21%), Positives = 103/264 (39%), Gaps = 54/264 (20%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
              +E++IGY F +++LL +ALTH S +      ++RLEFLGD +L  L    L+      
Sbjct: 1290 KQIEEQIGYTFRDKTLLWEALTH-SGTGKLGSMFQRLEFLGDAVLSYLAMQHLYKITPPL 1348

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFIRV--------------------------- 99
              G LS     LV  +  + V+ ++ L  +IR                            
Sbjct: 1349 NPGGLSKLRAELVCNQFLACVSIQIGLVKYIRHTDMTMEAAIGRFTAWVQGYLASESSTP 1408

Query: 100  -----------SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG-------TFVDK 141
                       S+ L  +  +       DV ES++ A+++D   ++         T +  
Sbjct: 1409 LPISTSATQIASARLFWNKGNTAPKTAGDVYESMLGAVFVDSQFDIHCVQSMFDITVISP 1468

Query: 142  YWKQRALKSGKFRR---DAKTELQEWAHAKFG-VTPEYKVTFRSGPDHDPRFTVVVEISG 197
            +W +     G       +   EL+  +++ F  V  +Y  T+  G  H    T  +    
Sbjct: 1469 WWWRFTSLFGGESMIYENPVAELRTLSYSLFKCVKIDY--TYEYGL-HGGT-TATITYHN 1524

Query: 198  LAPAQGMDCSKRAAEQVAAAEVLK 221
            +  AQ +   +R A++ AA   ++
Sbjct: 1525 MVLAQCLGTGQRDAKKAAACTAVE 1548



 Score = 73.6 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 58/154 (37%), Gaps = 13/154 (8%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
              LL+ A T  S + +   SYERLE LGD  L +  S  LF       EG ++ +   + 
Sbjct: 1118 PKLLQIATT--SSASNMGYSYERLETLGDSFLKIHQSLHLFCRNPFKNEGWMTQQRIKIE 1175

Query: 80   SAETCSQVARELDLASFIRVSSDLRKD----------VCSFMTSIQADVVESLIAALYLD 129
              +   Q A +  L  FI      +++                   A  +E++I A   +
Sbjct: 1176 KNQVLHQKALDAGLQHFILTKPLTKRNWVPPAKNIRLNQEISNKTLAGSIEAVIGACVEE 1235

Query: 130  GGIEVAGTFVDKYWKQRALKS-GKFRRDAKTELQ 162
            GG+E A   V +            +  D  T +Q
Sbjct: 1236 GGVEQAALAVSRLLSDEYETDWSNYHHDLYTSIQ 1269


>gi|115387529|ref|XP_001211270.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114195354|gb|EAU37054.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 1344

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 2/92 (2%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
             +E+++GY F    LL  A TH S   + +    Y+ LEFLGD +L ++    LF  F  
Sbjct: 1211 RVEEKLGYHFRYPRLLHSAFTHPSYPSAWARVPCYQSLEFLGDALLDMVCVEDLFRRFPD 1270

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFI 97
                 L+    ++VS +    +A +L L + +
Sbjct: 1271 RDPQWLTEHKMAMVSNKFLGALAVKLGLHTHL 1302



 Score = 72.8 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 46/191 (24%), Positives = 63/191 (32%), Gaps = 48/191 (25%)

Query: 11   KRIGYAFANRSLLEKALT--------HSS----ISHSYQESYERLEFLGDRILGLLISTL 58
            K++G   +      +ALT        H S    +     ++YERLEFLGD  L +  S  
Sbjct: 1005 KKLGLEIS-LEYALEALTKDSDNTHEHRSQQVHMQRGMGKNYERLEFLGDCFLKMATSIS 1063

Query: 59   LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-----------------SS 101
            LFN      E +  V    L+        A + +L  FIR                    
Sbjct: 1064 LFNQHPDDNEFDYHVNRMCLICNRNLFNSAVKKELYQFIRSRGFSRDTWYPEGLTLLQGR 1123

Query: 102  DLRKDVCSFM-----TSIQADVVESLIAALYL--------DGGIEVAGTFVDKYWKQRAL 148
            D  K + S           ADV E+LI A  L        D G+      VD        
Sbjct: 1124 DHSKKIGSESKHALAEKTIADVCEALIGAALLTPGPQHRFDMGVRAVSAVVDS-----NE 1178

Query: 149  KSGKFRRDAKT 159
             +    RD  +
Sbjct: 1179 HNAASWRDYIS 1189


>gi|154282055|ref|XP_001541840.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150412019|gb|EDN07407.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 1437

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 48/264 (18%), Positives = 92/264 (34%), Gaps = 66/264 (25%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            +  +E  +GY F  +  L +A TH S   S   SY+RLEF+GD IL  +I   LFN   +
Sbjct: 1097 FQEVESLVGYVFNKKVFLVQAFTHPSNPGSKTSSYQRLEFVGDAILDHIIVHHLFNAPRA 1156

Query: 66   AKEGELSVRFNSLVSAETCSQVA--------------------------RELDLASFIRV 99
                ++ +   +L +A+  + +                           R++ L  ++R 
Sbjct: 1157 LPHFDMHLMRTALANADFLAFLCIGMSTERVRGEIAECSKENTSTKLTTRKVSLWQYMRH 1216

Query: 100  SSDLRKDVCSFMTSIQ--------------------------------ADVVESLIAALY 127
             +          T+ Q                                +D++ES++ A++
Sbjct: 1217 GTSWELTAAQQQTANQYQTLQADISEALEKSHTYPWTLLSRFHPQKFFSDLIESVLGAIF 1276

Query: 128  LD--GGIEVAGTFVDK-----YWKQRALKSGKFRRDAKTEL-QEWAHAKFGVTPEYKVTF 179
            +D  G ++    F+++     + ++  +         K  L QE    K     E+ V  
Sbjct: 1277 IDSHGSLDACTAFLERIGLMKFLRRMLVDEDMDLMHPKQRLGQEVGTRKVRYEAEHVVDE 1336

Query: 180  RSGPDHDPRFTVVVEISGLAPAQG 203
              G      +T  V +      + 
Sbjct: 1337 EGGIGTLGYWTCKVFVGDECVVEA 1360



 Score = 75.9 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 20/149 (13%)

Query: 15   YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
             AF + SL+  A++ +S++     +Y+R+EFLGD IL    +  L        EG LS  
Sbjct: 922  IAFTDLSLVITAIS-ASVAREAT-NYQRIEFLGDSILKFQTTLQLTATNLIWHEGLLSRA 979

Query: 75   FNSLVSAETCSQVARELDLASFIRVS-----------------SDLRKDVCSFM-TSIQA 116
             +++VS +  S  A E  L  FI +                  S+ +      M T   A
Sbjct: 980  KDTVVSNKRLSYAAIEAGLDKFILLDVFTGAKWRPPYNKDHLESEEQGVAQREMSTKTLA 1039

Query: 117  DVVESLIAALYLDGGIEVAGTFVDKYWKQ 145
            DVVE+L+AA  LDGG   A   ++ +  +
Sbjct: 1040 DVVEALLAAATLDGGQRKAEKCLEIFLPE 1068


>gi|121714731|ref|XP_001274976.1| RNA helicase/RNAse III, putative [Aspergillus clavatus NRRL 1]
 gi|158706439|sp|A1C9M6|DCL2_ASPCL RecName: Full=Dicer-like protein 2; Includes: RecName:
            Full=Endoribonuclease dcl2; Includes: RecName:
            Full=ATP-dependent helicase dcl2
 gi|119403130|gb|EAW13550.1| RNA helicase/RNAse III, putative [Aspergillus clavatus NRRL 1]
          Length = 1389

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 57/281 (20%), Positives = 104/281 (37%), Gaps = 71/281 (25%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFD 64
            +  L++ I Y F N SLL +ALTH S  +    +SY+RLEFLGD +L ++I + +FNH  
Sbjct: 1099 HDRLKRHISYTFENESLLVEALTHPSCDYDASTQSYQRLEFLGDAVLDMIIVSAIFNHPV 1158

Query: 65   SAKEGELSVRFNSLVSAETCSQVAREL--------------------------DLASFIR 98
               +G ++   ++LV+A   + +  E                           +L  F+R
Sbjct: 1159 QMPQGHMTKIKHALVNANLLAFLCMEFAIPEERASVEQISTLQFEVISNEELVELWRFMR 1218

Query: 99   VSSDLRKDVCSF---------MTSIQ-----------------------ADVVESLIAAL 126
                L  +                I                        +D++ES++ A+
Sbjct: 1219 Y-RGLDLNNARDASLARHRALRDEILHSLQHDPHYPWQALSRLSADKFFSDIMESILGAI 1277

Query: 127  YLDGG--IEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            ++D G  +     FV++     + +R L         +   Q+ A +      + ++   
Sbjct: 1278 FVDSGGDLAPCEAFVERIGLMSYLRRILDENIEVTHPRNVAQQLAKSNIQFLAQ-RMPDE 1336

Query: 181  SGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVL 220
             G      +   V I  +       C +   AE  AA + +
Sbjct: 1337 EGGA---SYQCAVRIEEVEAFVVRGCLTAEEAEVTAAIDAI 1374



 Score = 88.2 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 19/160 (11%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            Y T+ + +G  F +   +  A++  S       +Y+R EFLGD IL   +S  LF    +
Sbjct: 924  YETILRDVG--FTSTQHIITAISAPSA--QALTNYQRYEFLGDSILKFSVSCQLFFKHPN 979

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFI-------------RVSSDLRKDVCSF-- 110
              EG LS   + +V     ++ A +  L +F+              +S  L +       
Sbjct: 980  WHEGYLSEGRDEIVQNPRLTKAALDTGLDAFVITKMFTPRKWSAPLISERLERVAGKRQV 1039

Query: 111  MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS 150
             + + ADVVE+LI A Y+DGG   A   + ++  +  L S
Sbjct: 1040 SSKVLADVVEALIGAAYMDGGHAAAQACIRRFLPEINLHS 1079


>gi|298711900|emb|CBJ48587.1| dicer-like 3 [Ectocarpus siliculosus]
          Length = 1557

 Score =  105 bits (262), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 22/161 (13%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHS-------YQESYERLEFLGDRILGL 53
            M  +R   LEKR+GY F    L  +A+TH S + +         + Y+RLEFLGD +LG 
Sbjct: 1318 MGNIRL--LEKRLGYTFRYPWLCMQAITHPSWTINDIPPGTVPAQDYQRLEFLGDAVLGW 1375

Query: 54   LISTLLFNHFDSAKEGELSVRF--NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111
            +++  L+    +    EL+     +S V   +   +A  LD+   +R S  +   + +F+
Sbjct: 1376 MVTAHLYFASSAFTPAELTRIKVTSSCVCNASLWVIALRLDVHHVLRASPKILGHIHAFI 1435

Query: 112  TSIQ-----------ADVVESLIAALYLDGGIEVAGTFVDK 141
             +             ADV+E+LI A+++D    +  + + +
Sbjct: 1436 ENNGVSGTGTAPKHPADVLEALIGAVFIDSSCCMNASLLLE 1476



 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 58/162 (35%), Gaps = 26/162 (16%)

Query: 5    RYSTLEKRIGYAFANRSLLEKAL-T---HS-------SISHSYQESYERLEFLGDRILGL 53
            R   LE+++     + SL   AL T   H        S +       ERLE LGD  L  
Sbjct: 1118 RMFDLERQLLCFVLHESLFLPALQTSLYHRNPPGADKSSNDKLLPVNERLETLGDAWLNY 1177

Query: 54   LISTLLFNHFD-SAKEGELSVRFNSLVSAETCSQVARELDLASFI-----RVSSDLRKDV 107
                ++F       +EG +++   ++VS     + A    L  F+      +        
Sbjct: 1178 YAGFVVFQDKPVLMEEGMMTLLRKNVVSNARLLKCADGRGLREFMYPPRSILGRPFDMWS 1237

Query: 108  CSF---------MTSIQADVVESLIAALYLDGGIEVAGTFVD 140
             S               ADVVE+L+ A  + GG   A   ++
Sbjct: 1238 PSLLPLPPPVKASKKTIADVVEALLGAALVAGGNRSAAYIME 1279


>gi|50294317|ref|XP_449570.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49528884|emb|CAG62546.1| unnamed protein product [Candida glabrata]
          Length = 449

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 90/233 (38%), Gaps = 27/233 (11%)

Query: 16  AFANRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSA 66
              +  +  +   H S+ +           + + ERLEFLGD IL  +++ +++N F S 
Sbjct: 181 EIKDHVIRARVFMHKSLVNDKVYLNESDIIKSNNERLEFLGDSILNTVMTMIIYNKFPSL 240

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
            EG L+     LV  ET  + +   +L   ++ +     D+ +  TS  AD+ E+ I  L
Sbjct: 241 NEGNLTELRKKLVKNETLREWSELYELPKQLKSNLSPDVDLSTSKTS--ADIFEAYIGGL 298

Query: 127 YLD---GGIEVAGTFVDKYWKQRALKS----------GKFRRDAKTELQEWAHAKFGVTP 173
             D     +     ++ K  K +  ++               +AK +L         +  
Sbjct: 299 MEDDPKTNLVKIRKWLKKLAKPKIEEAMKTSIQLEPTNNLDMNAKRKLYSLI-GYAALKL 357

Query: 174 EYKVTFRSGPDHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            Y    R   + +P   V      G     G   + + A   AA +VL++E +
Sbjct: 358 HYHTVQRPTNE-NPVTIVQCRTGDGTILGVGKARNIKLAGVKAAEDVLRKEDV 409


>gi|158706446|sp|Q4WA22|DCL2_ASPFU RecName: Full=Dicer-like protein 2; Includes: RecName:
            Full=Endoribonuclease dcl2; Includes: RecName:
            Full=ATP-dependent helicase dcl2
          Length = 1388

 Score =  104 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 59/279 (21%), Positives = 108/279 (38%), Gaps = 69/279 (24%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             L+  IGY F + SLL +ALTH S  + S  +SY+RLE+LGD +L ++I + +FNH    
Sbjct: 1100 RLKDHIGYTFEDESLLVEALTHPSCDYDSTTQSYQRLEYLGDAVLDMVIVSAIFNHRIQR 1159

Query: 67   KEGELSVRFNSLVSAETCSQVAREL--------------------------DLASFIRV- 99
             +G+++   +++V+A   + +  E                           +L  F+R  
Sbjct: 1160 PQGDMTKIKHAVVNANLLAFLCMEFAISEEKLDVAQTSKDSFAVTSSQESVELWRFMRYR 1219

Query: 100  SSDLR----KDVCSFM--------------------------TSIQADVVESLIAALYLD 129
               L+      +                                  +D++ES++ A+++D
Sbjct: 1220 GQGLKAARDASLARHRALRDEIASSLLQAPHYPWHALSRLNADKFFSDIIESVLGAIFVD 1279

Query: 130  GG--IEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
             G  +     FV++     + +R L  G   R  ++ +Q+ A        +   T   G 
Sbjct: 1280 SGGNLAPCEVFVEQIGLMAYLRRILDHGIDVRHPRSVVQQLAKTNIQFVLQRVPTEEGGA 1339

Query: 184  DHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLK 221
                 +   V++          C +   AE  AA E +K
Sbjct: 1340 S----YQCSVQMEQAELFVVTGCLTAEEAEVTAAVEAIK 1374



 Score = 87.8 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 67/155 (43%), Gaps = 17/155 (10%)

Query: 15   YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
             +F +   +  A+  S+       +Y+R EFLGD IL   +S  LF    +  EG LS  
Sbjct: 930  VSFKSTDHIITAI--STPLAHRLTNYQRYEFLGDSILKFSVSCQLFFQHPNWHEGYLSEG 987

Query: 75   FNSLVSAETCSQVARELDLASFI---RVSS------------DLRKDVCSFMTSIQADVV 119
             + +V     ++ A +  L ++I   R++S                      T + ADVV
Sbjct: 988  RDMIVQNPRLAKAALDTGLDAYIVTKRLASRKWSAPLISEKLGRVPAKRQMSTKVLADVV 1047

Query: 120  ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR 154
            E+LI A Y+DGG   A   + ++  +  L +   R
Sbjct: 1048 EALIGAAYVDGGHSTAQACIRRFLPEINLHAVDTR 1082


>gi|169849606|ref|XP_001831506.1| 60S ribosomal protein L3 [Coprinopsis cinerea okayama7#130]
 gi|116507458|gb|EAU90353.1| 60S ribosomal protein L3 [Coprinopsis cinerea okayama7#130]
          Length = 362

 Score =  104 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 46/214 (21%), Positives = 77/214 (35%), Gaps = 15/214 (7%)

Query: 24  EKALTHSSISHSYQESYER----------LEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
            +A TH S    +++ Y R          L   G+ ++GL     L   +          
Sbjct: 79  RQACTHPSFIDVWRQHYPREKRIPKDNAQLSVFGNSLMGLFAMEYLTTKYPYLPTRIQKA 138

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS--FMTSIQADVVESLIAALYLDGG 131
              + V   TC+ VA EL     +R     +         T   A +  ++ A +Y    
Sbjct: 139 VMTAHVGPNTCASVATELGADKLLRWHRTPQTPNAPAVLHTDALASIPRAMTALIYKKHS 198

Query: 132 IEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPR 188
           +  A  FV  Y+  R +      +  D K  L+E  H      P+ ++   +G   + P 
Sbjct: 199 LPSARQFVHSYFLSRQVDIRSMLKFLDPKKALKELVHKFGREPPKSRLLKETGRFSNTPV 258

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           F V +        +G   S + AE  AA + L+R
Sbjct: 259 FVVGIFSGADQIGEGFGSSLKMAEFRAAEDALQR 292


>gi|70981901|ref|XP_746479.1| RNA helicase/RNAse III [Aspergillus fumigatus Af293]
 gi|66844102|gb|EAL84441.1| RNA helicase/RNAse III, putative [Aspergillus fumigatus Af293]
          Length = 1384

 Score =  104 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 59/279 (21%), Positives = 108/279 (38%), Gaps = 69/279 (24%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             L+  IGY F + SLL +ALTH S  + S  +SY+RLE+LGD +L ++I + +FNH    
Sbjct: 1096 RLKDHIGYTFEDESLLVEALTHPSCDYDSTTQSYQRLEYLGDAVLDMVIVSAIFNHRIQR 1155

Query: 67   KEGELSVRFNSLVSAETCSQVAREL--------------------------DLASFIRV- 99
             +G+++   +++V+A   + +  E                           +L  F+R  
Sbjct: 1156 PQGDMTKIKHAVVNANLLAFLCMEFAISEEKLDVAQTSKDSFAVTSSQESVELWRFMRYR 1215

Query: 100  SSDLR----KDVCSFM--------------------------TSIQADVVESLIAALYLD 129
               L+      +                                  +D++ES++ A+++D
Sbjct: 1216 GQGLKAARDASLARHRALRDEIASSLLQAPHYPWHALSRLNADKFFSDIIESVLGAIFVD 1275

Query: 130  GG--IEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
             G  +     FV++     + +R L  G   R  ++ +Q+ A        +   T   G 
Sbjct: 1276 SGGNLAPCEVFVEQIGLMAYLRRILDHGIDVRHPRSVVQQLAKTNIQFVLQRVPTEEGGA 1335

Query: 184  DHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLK 221
                 +   V++          C +   AE  AA E +K
Sbjct: 1336 S----YQCSVQMEQAELFVVTGCLTAEEAEVTAAVEAIK 1370



 Score = 87.8 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 67/155 (43%), Gaps = 17/155 (10%)

Query: 15   YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
             +F +   +  A+  S+       +Y+R EFLGD IL   +S  LF    +  EG LS  
Sbjct: 926  VSFKSTDHIITAI--STPLAHRLTNYQRYEFLGDSILKFSVSCQLFFQHPNWHEGYLSEG 983

Query: 75   FNSLVSAETCSQVARELDLASFI---RVSS------------DLRKDVCSFMTSIQADVV 119
             + +V     ++ A +  L ++I   R++S                      T + ADVV
Sbjct: 984  RDMIVQNPRLAKAALDTGLDAYIVTKRLASRKWSAPLISEKLGRVPAKRQMSTKVLADVV 1043

Query: 120  ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR 154
            E+LI A Y+DGG   A   + ++  +  L +   R
Sbjct: 1044 EALIGAAYVDGGHSTAQACIRRFLPEINLHAVDTR 1078


>gi|159122296|gb|EDP47418.1| RNA helicase/RNAse III, putative [Aspergillus fumigatus A1163]
          Length = 1384

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 59/279 (21%), Positives = 108/279 (38%), Gaps = 69/279 (24%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             L+  IGY F + SLL +ALTH S  + S  +SY+RLE+LGD +L ++I + +FNH    
Sbjct: 1096 RLKDHIGYTFEDESLLVEALTHPSCDYDSTTQSYQRLEYLGDAVLDMVIVSAIFNHRIQR 1155

Query: 67   KEGELSVRFNSLVSAETCSQVAREL--------------------------DLASFIRV- 99
             +G+++   +++V+A   + +  E                           +L  F+R  
Sbjct: 1156 PQGDMTKIKHAVVNANLLAFLCMEFAISEEKLDVAQTSKDSFAVTSSQESVELWRFMRYR 1215

Query: 100  SSDLR----KDVCSFM--------------------------TSIQADVVESLIAALYLD 129
               L+      +                                  +D++ES++ A+++D
Sbjct: 1216 GQGLKAARDASLARHRALRDEIASSLLQAPHYPWHALSRLNADKFFSDIIESVLGAIFVD 1275

Query: 130  GG--IEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
             G  +     FV++     + +R L  G   R  ++ +Q+ A        +   T   G 
Sbjct: 1276 SGGNLAPCEVFVEQIGLMAYLRRILDHGIDVRHPRSVVQQLAKTNIQFVLQRVPTEEGGA 1335

Query: 184  DHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLK 221
                 +   V++          C +   AE  AA E +K
Sbjct: 1336 S----YQCSVQMEQAELFVVTGCLTAEEAEVTAAVEAIK 1370



 Score = 89.7 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 67/155 (43%), Gaps = 17/155 (10%)

Query: 15   YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
             +F +   +  A+  S+       +Y+R EFLGD IL   +S  LF    +  EG LS  
Sbjct: 926  VSFKSTDHIITAI--STPLAHRLTNYQRYEFLGDSILKFSVSCQLFFQHPNWHEGYLSEG 983

Query: 75   FNSLVSAETCSQVARELDLASFI-------------RVSSDLRKDVCSF--MTSIQADVV 119
             + +V     ++ A +  L ++I              +S  L +        T + ADVV
Sbjct: 984  RDMIVQNPRLAKAALDTGLDAYIVTKRLASRKWSAPLISEKLERVPAKRQMSTKVLADVV 1043

Query: 120  ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR 154
            E+LI A Y+DGG   A   + ++  +  L +   R
Sbjct: 1044 EALIGAAYVDGGHSTAQACIRRFLPEINLHAVDTR 1078


>gi|156044530|ref|XP_001588821.1| hypothetical protein SS1G_10369 [Sclerotinia sclerotiorum 1980]
 gi|154694757|gb|EDN94495.1| hypothetical protein SS1G_10369 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1515

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 87/221 (39%), Gaps = 63/221 (28%)

Query: 3    ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
             +    +E+ + Y F  +SLL +A+TH S  +  Q S ERLEFLGD IL  +I T ++++
Sbjct: 1179 PIALQPIEQILAYTFTKKSLLVEAMTHPSYINGTQ-SLERLEFLGDAILDNIIVTAMWSY 1237

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVA--------------------------RELDLASF 96
                   ++ +  ++LV+A+  + +                           R   L +F
Sbjct: 1238 ETELSHFQMHLLRSALVNADFLAFLCMEMSIEQYVTDLTEGKDHQIHETHTRRRFSLVNF 1297

Query: 97   IRVSSD--------LRKDVCSFMTSIQA-----------------------DVVESLIAA 125
            +R SS                    I A                       D++ESL+ A
Sbjct: 1298 LRHSSATFSIYQKQALARHQELREEILAVIKTGDKFPWTLLSRLDARKFFSDMIESLLGA 1357

Query: 126  LYLDGG-IEVAGTFVDK----YWKQRALKSGKFRRDAKTEL 161
            +++D G I+V    V++     + +R L+ G      K EL
Sbjct: 1358 IWIDSGSIDVCTRVVERMGILRYMRRILREGVRIMHPKEEL 1398



 Score = 99.4 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 45/147 (30%), Positives = 71/147 (48%), Gaps = 20/147 (13%)

Query: 16   AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
              ++R L++ A+TH+S S     +Y+RLEFLGD IL L  S  L + +    EG LS   
Sbjct: 1012 EISDRGLVQTAITHASYS--LTSNYQRLEFLGDSILKLCTSVQLISEYPLWPEGYLSAMK 1069

Query: 76   NSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDVCSFMTSIQADV 118
            + +VS    S+ A EL L  +I                  + +  +K      + + +DV
Sbjct: 1070 DRIVSNSRSSRAAVELGLDEYIITKKFTGSKWRPMYVEDYLKTTEQKSR-QMSSKVLSDV 1128

Query: 119  VESLIAALYLDGGIEVAGTFVDKYWKQ 145
            VE+LI A  +DGGI  A   +  ++ +
Sbjct: 1129 VEALIGACMVDGGIPKALKSLQLFFPE 1155


>gi|310794641|gb|EFQ30102.1| RNase3 domain-containing protein [Glomerella graminicola M1.001]
          Length = 1447

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 61/293 (20%), Positives = 102/293 (34%), Gaps = 79/293 (26%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFNHFD 64
               LE  IGY F  ++LL +A+TH+S +        ERLEF+GD +L  ++   LF    
Sbjct: 1139 LEPLEHLIGYKFDRKTLLIQAMTHASFNLGNPFGCLERLEFMGDSVLDYVVVNRLFAVEP 1198

Query: 65   SAKEGELSVRFNSLVSAETCSQVARE--------------------------LDLASFIR 98
                  + +   ++V+ +    ++ E                          L L  F+R
Sbjct: 1199 PLPHQTMHLLKTAMVNGDFLGFLSLEQSIGQDEVVLGENTGKEPNLQHSRFSLPLWKFMR 1258

Query: 99   VSS---DLRKDVCSFM----------------------------TSIQADVVESLIAALY 127
              S    L +                                      +D+ ESL+ A+Y
Sbjct: 1259 HQSPAIGLEQINVHKRYTALRDQIIDSMERGKTYPWALLARIQLRKFYSDIFESLLGAVY 1318

Query: 128  LDGG-IEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS- 181
            +D G + V    V+++    +  R L+ G      K   +E  H        Y +  R  
Sbjct: 1319 VDSGDLGVCARVVERFGITGYLDRILRDGVHVLHPK---EELGHLADKEKVTYVLNARQA 1375

Query: 182  GPD--HDPRFTVVVEISGLAPAQ--GMDCSK-----RAAEQVAAAEVLKREGI 225
            G D   +  +   V +      +  G   ++     +AAE  AA  +LK E I
Sbjct: 1376 GDDAAEEKEYLCRVLVGTRCVVEVDG-GVTREEVKVKAAE--AAVNILKAEKI 1425



 Score = 90.5 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 19/145 (13%)

Query: 18   ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
            ++ SL+  A++  S S     +YER+EFLGD IL    +  +        E  LS   ++
Sbjct: 970  SDLSLILTAISTGSASEPT--NYERIEFLGDSILKFSATINVAALNPQWPERLLSFHKDA 1027

Query: 78   LVSAETCSQVARELDLASFIR-----------------VSSDLRKDVCSFMTSIQADVVE 120
            +VS  T  + A +  L  +I                  +S    K +    T   AD+VE
Sbjct: 1028 IVSNSTLCKAAVKHGLDRYILTKPFTGQKWRPIYVDSVLSRGEDKSMRKMSTKTLADIVE 1087

Query: 121  SLIAALYLDGGIEVAGTFVDKYWKQ 145
            +LI A  +DGG++ A   +  + +Q
Sbjct: 1088 ALIGASMIDGGLDKALKCMSIFLQQ 1112


>gi|302685924|ref|XP_003032642.1| hypothetical protein SCHCODRAFT_53921 [Schizophyllum commune H4-8]
 gi|300106336|gb|EFI97739.1| hypothetical protein SCHCODRAFT_53921 [Schizophyllum commune H4-8]
          Length = 368

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 85/226 (37%), Gaps = 16/226 (7%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQE---------SYERLEFLGDRILGLLISTLLFNHF 63
           +G       L+++A TH+S     +E         +  +LE +G+ ++GL  S  L   +
Sbjct: 68  LGNVLTTPELVQQACTHASFVALQKEVNPNAPAPATNAQLEQVGNALMGLFASEYLAAKY 127

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIR----VSSDLRKDVCSFMTSIQADVV 119
                  L     + V   TC+ VA+E+     +R    +S +         T   A + 
Sbjct: 128 PYLPTKVLKAAVTAHVGPLTCANVAQEMGATQLLRWNRTISRNPSHPQVMLHTDALASIP 187

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKV 177
            +L A +Y    +  A  FV  ++  R +        R+ K  L +         P  ++
Sbjct: 188 RALTALIYQKRSLPAARQFVHSFFLSRQVDLRSMLKFRNPKWALLQLVRKFDRERPVSRL 247

Query: 178 TFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              +G   + P + V V        +G   S + AE  AA + L R
Sbjct: 248 LKETGRFSNSPVYLVGVFSGEEQIGEGFGSSLKMAEYRAAEDALLR 293


>gi|294611997|gb|ADF27743.1| ribonuclease III [Ehrlichia ruminantium]
          Length = 92

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 50/91 (54%)

Query: 86  QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145
            +A+ ++L  FI +S   R    +   +   + +E+LI A+YLDGG++ A  F+  +WK 
Sbjct: 2   DIAQSINLGIFIIMSDGERSCGGANNCNNLENALEALIGAIYLDGGLKAAKDFIFLFWKN 61

Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
            A       +DAKT LQEWA +K    P Y+
Sbjct: 62  SATHMKVPPQDAKTILQEWAQSKGFPAPSYQ 92


>gi|321452752|gb|EFX64071.1| hypothetical protein DAPPUDRAFT_118569 [Daphnia pulex]
          Length = 344

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 55/257 (21%), Positives = 85/257 (33%), Gaps = 54/257 (21%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLL 59
            +   + LE++IGY F +++LL +ALTHSS +         E LE LGD  L L      
Sbjct: 61  KSFSMTALEEKIGYEFKDKTLLGRALTHSSANVTKCPSRDGENLEVLGDASLDL------ 114

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-------------------- 99
                   +G+LSV  +++   +T + +A    L   ++                     
Sbjct: 115 ---NPRYNQGQLSVLKSAITCNDTLAVIAVRSGLHLLLQHRLPEKQIEELRSFVDHQNKN 171

Query: 100 --------------SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE--VAGTFVDKYW 143
                         SS+  +        + AD  ESLI AL +D   E  V    V    
Sbjct: 172 QHLFSHEKELVIISSSEGDRAFDIDYPKVYADAFESLIGALRIDCEREDKVIRKVVLNLM 231

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203
                K           LQ     K                 D    V++E+       G
Sbjct: 232 GDVIAKFHTNI--PVCPLQRVNQNKIRTEF-----KEEKNLPDGTVNVILEVKNFQSFHG 284

Query: 204 MDCSKRAAEQVAAAEVL 220
              S ++A+  AA   +
Sbjct: 285 SGQSLKSAKTAAARLAI 301


>gi|299748332|ref|XP_001837616.2| double-stranded RNA binding domain-containing protein-containing
           protein [Coprinopsis cinerea okayama7#130]
 gi|298407924|gb|EAU84240.2| double-stranded RNA binding domain-containing protein-containing
           protein [Coprinopsis cinerea okayama7#130]
          Length = 435

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 68/169 (40%), Gaps = 21/169 (12%)

Query: 16  AFANRSLLEKALTHSSIS-----------HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
              NR++  +  TH S             +      ER E LGD +LGL+++ L+F+ F 
Sbjct: 93  EITNRNIELQVFTHRSYHARPTHVFEDHINDLSPDNERYEHLGDTVLGLVVTNLMFDMFP 152

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             + G  +   + +V   T ++++++  L   +R+            T++QADV E+ + 
Sbjct: 153 GLRVGPSTKIRSLVVGNSTLAEISKKYRLPDRLRLHQAQAIT-LRASTNVQADVFEAFVG 211

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP 173
            L+ D  +     +++  ++  A    K   D   +            P
Sbjct: 212 GLFKDQDLPAVQRWLNPLFRPYA----KAAYDYVRK-----QTNLPPLP 251



 Score = 52.0 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 8/51 (15%)

Query: 183 PDH--------DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           PDH        +P + V V + G    +G   +K+AA   AA E L + GI
Sbjct: 383 PDHLRIKSSPLNPVWYVKVLVDGEFYGRGRGNTKKAARNEAAKEGLVKLGI 433


>gi|162447497|ref|YP_001620629.1| dsRNA-spesific ribonuclease [Acholeplasma laidlawii PG-8A]
 gi|161985604|gb|ABX81253.1| dsRNA-spesific ribonuclease [Acholeplasma laidlawii PG-8A]
          Length = 335

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/177 (26%), Positives = 81/177 (45%), Gaps = 18/177 (10%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLL 59
           M       +E  +GY F N++LL +A T SS    +     E LEF+GD ++  +I  + 
Sbjct: 1   MKEKDIKEIEDILGYTFTNKNLLIQAFTRSSEREKNNNRDSEILEFIGDTVINYVIIQMF 60

Query: 60  FNHFDSA---------KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110
            N+  +A          EGEL+   + +V  +  +    +  L  F+R  SD  K + S 
Sbjct: 61  NNNLFNADNYGLNSQYSEGELTELKSLIVENKNLAAKIDDFGLDRFLR--SDNSKQIPS- 117

Query: 111 MTSIQADVVESLIAALYLDGGIE--VAGTFVDKYWKQRALKSGKFRRDAKTELQEWA 165
             S ++D++ES++ A+ +D   E       VD     RA   G  + +   +L++W 
Sbjct: 118 --SFKSDLLESIVGAIAIDSHYEEKEIYEIVDYLLMPRAY-IGSLKFNYYLKLKQWC 171


>gi|169610828|ref|XP_001798832.1| hypothetical protein SNOG_08521 [Phaeosphaeria nodorum SN15]
 gi|160702165|gb|EAT83689.2| hypothetical protein SNOG_08521 [Phaeosphaeria nodorum SN15]
          Length = 1443

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 82/240 (34%), Gaps = 28/240 (11%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
              +E +  Y F    LL  A  H S         SY+RLEFLGD +L +     LF  + 
Sbjct: 1163 HKIEMKHPYRFRYPRLLRSAFIHPSQPFMWENIPSYQRLEFLGDSLLDMAFIMHLFYKYP 1222

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVC--------SFMTSIQ 115
                  L+     +VS +    V     +  ++  V    R+           S      
Sbjct: 1223 DKDPQWLTEHKTPMVSNKFLGAV----QIRDYVYEVEEAEREANGAVDYWVSVSEPPKCL 1278

Query: 116  ADVVESLIAALYLDG--GIEVAGTFVDKYWKQRALKS------GKFRRDAKTELQEWAHA 167
            ADV+E+ +AA+++D      V   F D + K   L                T L      
Sbjct: 1279 ADVIEAFVAAIFVDSEFDFNVVQKFFDLHLKPFFLDMTLDAYENFASNHPTTRLSRLLSI 1338

Query: 168  KFGVTPEYKV----TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             FG + E+++    T    P        +V I        +  S R A   A+   L++ 
Sbjct: 1339 NFGCS-EWRMGALETETLIPGKGKAIAAMVMIHDKVHFHSLGQSGRYARVRASHAALEKL 1397



 Score = 55.1 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 51/158 (32%), Gaps = 49/158 (31%)

Query: 20   RSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             +L  +ALT  S                   +YERLEFLGD  L +  S  +F       
Sbjct: 946  PALALEALTKDSDNSEEHGEEKINFKSGMGPNYERLEFLGDCFLKVATSLSVFVQQPEEN 1005

Query: 68   EGELSVRFNSLVSAETCSQVA-------------RELDLASFIRV--------------- 99
            E E  VR   ++  +   + A             R+L L  ++R                
Sbjct: 1006 EFEFHVRRMLMLCNQNLMETAVGKKKVASANGTERDLQLYKYVRTDAFSRRNWYPEGLKL 1065

Query: 100  --SSDLRKD-------VCSFMTSIQADVVESLIAALYL 128
                 L+K          +      ADV E+ I A ++
Sbjct: 1066 LRGKGLKKTEEDWLNVTHNLGDKSVADVCEAFIGAAFM 1103


>gi|307353641|ref|YP_003894692.1| ribonuclease III [Methanoplanus petrolearius DSM 11571]
 gi|307156874|gb|ADN36254.1| ribonuclease III [Methanoplanus petrolearius DSM 11571]
          Length = 173

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 5/138 (3%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLFNHF 63
            LE+ IGY F N  LL +ALT  + S           + L  LGD ++ +++   L    
Sbjct: 33  ELEEIIGYRFKNHELLTRALTRLAYSLENDLPEGFHMDALATLGDAVIDVIVLESLMKSG 92

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
               +GELSV  + +V+     + A  ++L  ++                + A++ E+L 
Sbjct: 93  -LYSKGELSVAKSDIVNMTRLRKAAESIELFRYVHWGKGEEASHIWTSGRVMAELCEALA 151

Query: 124 AALYLDGGIEVAGTFVDK 141
            A+YLDGG+      + +
Sbjct: 152 GAVYLDGGLGAVEKVIRE 169


>gi|39942154|ref|XP_360614.1| hypothetical protein MGG_03157 [Magnaporthe oryzae 70-15]
 gi|145015863|gb|EDK00353.1| hypothetical protein MGG_03157 [Magnaporthe oryzae 70-15]
          Length = 402

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/271 (19%), Positives = 90/271 (33%), Gaps = 63/271 (23%)

Query: 16  AFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
              + S+ + A THSS+  +     +SY+RLE+LGD  L L  +  ++  F +   G  S
Sbjct: 122 EIKDPSIEKAAFTHSSVIGNKLSGVQSYDRLEWLGDAYLELFATCFIYQTFPALSHGASS 181

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSS---DLRKDV----CSFMTSIQADVVESLIAA 125
                L+  ++ +Q  +   L    R+      L            T I  D+ E+ + A
Sbjct: 182 QLREVLIRNDSLAQWTQAYGLEKRARLPPEFAGLNHSGQAMMQKKRTKIYGDLFEAYVGA 241

Query: 126 LYLD---GGIEVAGTFVDKYWKQR----------------------------------AL 148
           +       G + A  ++   W  R                                  A+
Sbjct: 242 IIASDPVHGTDRAAVWLKSLWAPRLKREIHAEEKRQRCLVASTTSLESDPIQGPTDNYAV 301

Query: 149 KSGKFRRDAKTELQEWAHAK---FGVTPEYKVT----FRSGPDHDPRFTVVVEIS----- 196
            + K  R  K    E   A     GV   Y        +   ++ P F V V +      
Sbjct: 302 AAPKPNRSPK----EALAAMIVVKGVKLSYVDLPAPKKKDKNNNLPLFAVAVVLDGWGES 357

Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           GL    G+  +K  A   AA   +  + + T
Sbjct: 358 GLQLGMGVAKNKSEAGHAAAQRAMDNKKLIT 388


>gi|290999955|ref|XP_002682545.1| predicted protein [Naegleria gruberi]
 gi|284096172|gb|EFC49801.1| predicted protein [Naegleria gruberi]
          Length = 339

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 53/253 (20%), Positives = 93/253 (36%), Gaps = 50/253 (19%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYE--RLEFLGDRILGLLISTLLFNHFDSA 66
           +E  I     +++LL      +SI  +   S E  RL F+G  +  L ++  LF HF + 
Sbjct: 82  IENEIPLPLDDKTLL------TSIVQTRGLSSEGSRLNFVGRNVTALCVADYLFAHFPNL 135

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFI----------------------------- 97
               L +     +   T  QVA+ L L   +                             
Sbjct: 136 THDHLVMATLEFLKNRTIVQVAKSLKLDGLLSSSLTLVASSNNLNNRDDSDLDNPPIDSE 195

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-- 155
              S L  +  +   S+    +  ++ AL+   G+  A  F+ +    +++      +  
Sbjct: 196 VTGSGLNIERNNL-DSLLVFSIYRMVGALFEQHGLMEARKFIVRNLIAQSIDITAMLQYF 254

Query: 156 DAKTELQEWA-----HAKFGVTPEYKVTFRSGPDHDPRF-TVVVEISGLAPAQGMDCSKR 209
           D KT+L +       H     T +YK   +     + RF TV V +      +G   +K+
Sbjct: 255 DPKTQLAQMVRTGEMHEHAHKTVQYKEVSKD----EKRFVTVHVYVDNDVIGEGTGQTKK 310

Query: 210 AAEQVAAAEVLKR 222
            AEQ AA + L +
Sbjct: 311 IAEQKAAQDALNK 323


>gi|328865990|gb|EGG14376.1| putative RNase III [Dictyostelium fasciculatum]
          Length = 576

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 39/151 (25%), Positives = 62/151 (41%), Gaps = 23/151 (15%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISH----------------SYQESYERLEFLGD 48
           +    +  I  +F N  LL +  TH S                    +    +RLEFLGD
Sbjct: 131 KVDQFQSNI-ISFENDLLLREIFTHPSSKKINSLNPAEYKLFKDLLPFTTDNQRLEFLGD 189

Query: 49  RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108
            IL    S  LF  +  A EGEL+ R + L +     +   E  +   +R SS       
Sbjct: 190 SILKFCASIYLFFKYPKANEGELTTRRSELTNNTYLLEKCNEWGIIELLRYSSTE----- 244

Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
             +   +ADV+E++  A++L+ G +    F+
Sbjct: 245 -DIKKPKADVMEAMFGAIFLERGFKEVYRFI 274



 Score = 92.4 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 55/136 (40%), Gaps = 17/136 (12%)

Query: 22  LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
           LLE A+T          SY+RLEFLGD  L  ++S  L+  F    EG LS     LV  
Sbjct: 320 LLEDAIT---CLGDQNYSYQRLEFLGDSYLDGIVSHFLYREFPLENEGFLSQARALLVRN 376

Query: 82  ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141
           E  +Q+++ + L   +           +F T    D+ E+ I  + LD  +E     + +
Sbjct: 377 EALAQISQRIKLYQLV------TDPSATFSTKRLGDLFEAFIGGVLLDNELEDTKKLIYR 430

Query: 142 YWKQRALKSGKFRRDA 157
                        +D 
Sbjct: 431 LL--------NLNKDY 438


>gi|300709179|ref|XP_002996756.1| hypothetical protein NCER_100079 [Nosema ceranae BRL01]
 gi|239606080|gb|EEQ83085.1| hypothetical protein NCER_100079 [Nosema ceranae BRL01]
          Length = 1131

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 4/137 (2%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHS--YQESYERLEFLGDRILGLLISTL 58
            +       +EK I Y F N+  +EKA+ H S   +    E +++LE +GD  L L +S  
Sbjct: 973  LPLANILKVEKIINYTFKNKGYIEKAMIHPSYKDNIFGSERFQKLELVGDCFLDLKVSDY 1032

Query: 59   LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR--VSSDLRKDVCSFMTSIQA 116
            +F  +  A    L     SLV+  T + +  +  L  F    +S   R    + ++    
Sbjct: 1033 IFFKYTDADPETLHTHRKSLVNNHTFAMILFKSGLYDFSFTGLSDQTRDFNNNKVSKCYG 1092

Query: 117  DVVESLIAALYLDGGIE 133
            D+ E+L  A+ LD   +
Sbjct: 1093 DIFEALAGAVILDSEFD 1109



 Score = 58.2 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 58/166 (34%), Gaps = 46/166 (27%)

Query: 40  YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99
           YER EF+GD +L   +S  LF         +L    +SLV  +   +V R+++L  +  +
Sbjct: 795 YERFEFIGDSVLKYSVSKFLFTEC-GYNLNKLVSTKDSLVCNDHLYRVGRQINLQKYFSL 853

Query: 100 S---------------------------SDLRKDVCSFM------------------TSI 114
           +                            +L ++   +                     +
Sbjct: 854 NRYTEHLFQPPAILDLEFDKSLIESLNLKNLFQNNNQYNFVKLYSRKQSQDTNLEKGKKV 913

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTE 160
            AD+VESLI   Y++ G + A  F+          S +   +  T+
Sbjct: 914 YADIVESLIGVHYIEQGFQKAWNFIKSIGILENHGSKRHSNNFMTK 959


>gi|254411973|ref|ZP_05025748.1| RNase3 domain protein [Microcoleus chthonoplastes PCC 7420]
 gi|196180939|gb|EDX75928.1| RNase3 domain protein [Microcoleus chthonoplastes PCC 7420]
          Length = 317

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 66/148 (44%), Gaps = 5/148 (3%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISH---SYQESYERLEFLGDRILGLLISTLLFNHF 63
            +LE +IG  F +   L  AL H S +      +++ ERL+FLGD I+ L+I+  L+++ 
Sbjct: 6   ESLENQIGIQFKHSDTLRLALMHRSYAEQIGESEQNNERLKFLGDAIVNLVITDYLYHNC 65

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLAS-FIRVSSDLRKDVCS-FMTSIQADVVES 121
              +        + LV  +  +++  +L L   +  +     +        +   + + +
Sbjct: 66  PYLEVSNFKGLRDKLVEGQRLTKLWYQLGLGEGYPFLGLTQERHRLRLQNHNPFEEALIA 125

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALK 149
           L+ A++ D G   A  ++ K      L+
Sbjct: 126 LVGAIHQDRGFSQARNWLVKQLIAPLLE 153



 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 57/145 (39%), Gaps = 14/145 (9%)

Query: 22  LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
           LLE+   H           ++L FLGD +L  +++  L+ +  + K G L+  F  L S 
Sbjct: 151 LLER---HLKKIKERSSPNKQLRFLGDAVLKGIVADYLYGYLPNVKVGNLNDLFKELTSK 207

Query: 82  ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT---F 138
           +  S    ++       ++             +     ++L+AA+YL+   E        
Sbjct: 208 DNQSNFINQITTEELTALNLG--------NEKVLGKSFKALLAAVYLNRSAENDKRGFAE 259

Query: 139 VDKYWKQRALKSGKFRRDAKTELQE 163
            + ++ +R +   +  R A   L E
Sbjct: 260 TENWFVERFVDQEQVLRKAIRLLME 284


>gi|281414105|ref|ZP_06245847.1| RNAse III [Micrococcus luteus NCTC 2665]
          Length = 130

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 6/123 (4%)

Query: 104 RKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTEL 161
           R+   +   SI AD +E+LI A+Y+D G   A   V ++      +    R   D KT +
Sbjct: 1   RRTGGADKDSILADTLEALIGAVYVDHGAVAAAALVHRHVVPLLDEPDLLRESTDWKTVV 60

Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE--- 218
            E A         Y +  + GP HDPR+   + +        +  SK+ AE+ AAA    
Sbjct: 61  AEAASRHGLGAVRYAIEGQ-GPAHDPRYRATLVVGEREYGSAVASSKKQAERDAAAASWP 119

Query: 219 VLK 221
            L+
Sbjct: 120 ALE 122


>gi|258571479|ref|XP_002544543.1| predicted protein [Uncinocarpus reesii 1704]
 gi|237904813|gb|EEP79214.1| predicted protein [Uncinocarpus reesii 1704]
          Length = 387

 Score =  102 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 47/210 (22%), Positives = 81/210 (38%), Gaps = 23/210 (10%)

Query: 18  ANRSLLEKALTHSS-----ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            +++L     TH          +   SY+RLE LGD  L ++ + L+++ F S   G +S
Sbjct: 132 KDKTLETAVFTHQGEIPAHAPPAIHHSYDRLEILGDAYLEVIATRLIWDRFQSLPPGRIS 191

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL---D 129
                LV  ET +Q +        +RVS ++R     ++  ++ DV E+  AA+ L    
Sbjct: 192 QIRELLVKNETLAQFSERFKFDQLVRVSPEIRSQPKRWV-KVKGDVFEAYAAAVILSDPI 250

Query: 130 GGIEVAGTFVDKYWKQRA--LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
            G  +   ++ + W      ++        K  L +    K GV   Y     S P    
Sbjct: 251 NGFNLVEDWLVRLWGPILDRVQPEDQATHHKESLAKRVMGK-GVKLRY--IDESPPITRK 307

Query: 188 ----RFTVVVEISG-----LAPAQGMDCSK 208
                F + V ++G          G   +K
Sbjct: 308 GGMATFFIGVYLTGWGWESQHLGSGTGLNK 337


>gi|281211700|gb|EFA85862.1| putative RNase III [Polysphondylium pallidum PN500]
          Length = 1126

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 39/157 (24%), Positives = 69/157 (43%), Gaps = 22/157 (14%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHS----------------YQESYERLEFLGD 48
           +  + ++ I Y+  N  LL +  TH S   S                Y+   +R+EFLGD
Sbjct: 696 KMESFKRNI-YSINNERLLREVFTHPSTKRSNQTPPVNMKIYKNYKFYEGDNQRIEFLGD 754

Query: 49  RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC 108
            +L    S  LF  F  A EG L+ + + + +     ++    ++   +R+  +      
Sbjct: 755 SVLKFCTSIYLFYKFPEAMEGVLTTKRSEMTNNNYLIEICDMFEMDEVLRLPQNKD---- 810

Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145
             +   +ADVVE+L  A+YL+ G+  A  F+ K   +
Sbjct: 811 -DIKKPKADVVEALFGAVYLERGMYEAFRFIMKMIFK 846



 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 40/128 (31%), Positives = 63/128 (49%), Gaps = 6/128 (4%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
                +  L  +A+   + S   + SY+RLEFLGD  L ++ S  LF+ F + +EG LS 
Sbjct: 877 NIEIKHNCLFTEAM---NCSSDPRMSYQRLEFLGDAFLDVVTSDFLFHAFPNEQEGFLSQ 933

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
               LV  ++ + + ++L+L   + +SS        F      D+ ES++  L LD GIE
Sbjct: 934 ARALLVKNDSLACIFQQLNLKDCVDLSS---CPGIVFNQKRMGDLFESVVGCLLLDQGIE 990

Query: 134 VAGTFVDK 141
               FV K
Sbjct: 991 KTKDFVLK 998



 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 12/73 (16%)

Query: 156 DAKTELQEWAHAKFGV-TPEY----KVTFRSGPDHDPRFTVVVEI--SGLAP-AQGMDCS 207
           + K  LQE          P+Y     V+  +G +    F   V +   G    A+G   +
Sbjct: 5   NYKGLLQELCQRNDPQSLPQYSDAIYVSDNTGNN----FITEVVVKYGGKVYRAEGRAKA 60

Query: 208 KRAAEQVAAAEVL 220
           K+ AE+ AA +VL
Sbjct: 61  KKEAERYAARDVL 73


>gi|149732822|ref|XP_001500801.1| PREDICTED: ribonuclease type III, nuclear isoform 3 [Equus caballus]
          Length = 1192

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 2/91 (2%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1069 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1128

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDL 93
            F    EG L++  +SLV+  T ++VA EL +
Sbjct: 1129 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGM 1159



 Score = 98.6 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 54/107 (50%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 926  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 985

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
              +        S +    A+  E+LI A+YL+G +E A     +   
Sbjct: 986  LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1032


>gi|114600831|ref|XP_001156889.1| PREDICTED: ribonuclease III, nuclear isoform 1 [Pan troglodytes]
          Length = 1189

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 2/91 (2%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1069 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1128

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDL 93
            F    EG L++  +SLV+  T ++VA EL +
Sbjct: 1129 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGM 1159



 Score = 98.6 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 54/107 (50%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 926  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 985

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
              +        S +    A+  E+LI A+YL+G +E A     +   
Sbjct: 986  LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1032


>gi|32450506|gb|AAH54003.1| RNASEN protein [Homo sapiens]
          Length = 1192

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 2/91 (2%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1069 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1128

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDL 93
            F    EG L++  +SLV+  T ++VA EL +
Sbjct: 1129 FPDHHEGHLTLLRSSLVNNRTQAKVAEELGM 1159



 Score = 98.6 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 54/107 (50%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 926  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 985

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
              +        S +    A+  E+LI A+YL+G +E A     +   
Sbjct: 986  LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1032


>gi|125586950|gb|EAZ27614.1| hypothetical protein OsJ_11558 [Oryza sativa Japonica Group]
          Length = 258

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 70/204 (34%), Gaps = 29/204 (14%)

Query: 42  RLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS 101
           RLEFLGD IL  L +   ++ +       L+   ++ V+    +  A +  L   I  SS
Sbjct: 46  RLEFLGDAILDHLFTEYYYSKYPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSS 105

Query: 102 DLRKDVCSF---------------------MTSIQADVVESLIAALYLDG--GIEVAGTF 138
                  S+                     +  +  DV+ES+  A+YLD     EV    
Sbjct: 106 SELHRKMSYYLEEFGQSFTGPSYGWEAGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRS 165

Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
           + +  +  A        D    LQE+   +      Y+     G          V+    
Sbjct: 166 MKRLLEPLA-TPETIEPDPVKGLQEFCDRRSFK-ITYEKNHVDGVS---SVIARVKAGET 220

Query: 199 AP-AQGMDCSKRAAEQVAAAEVLK 221
              A      K  A+++A+  VLK
Sbjct: 221 TYSATKSGPCKLVAKKLASKAVLK 244


>gi|189205613|ref|XP_001939141.1| endoribonuclease dcr-1 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187975234|gb|EDU41860.1| endoribonuclease dcr-1 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1572

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 66/188 (35%), Gaps = 34/188 (18%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDS 65
             +E +  Y F    LL  A  H S  +      +Y+RLEFLGD +L +   T L+  +  
Sbjct: 1283 KIEAKHPYHFKYPRLLRSAFAHPSYPYIYENIPNYQRLEFLGDSLLDMAFITHLYYKYPD 1342

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF--------------- 110
                 L+     +VS +    V  +L    +I+ ++ +                      
Sbjct: 1343 KDPQWLTEHKTPMVSNKFLGAVCVKLGWHVYIKQNTAILTSQIRDYVLEAQEAEREASSA 1402

Query: 111  ---------MTSIQADVVESLIAALYLDG--GIEVAGTF----VDKYWKQRALKS--GKF 153
                          ADV+E+  AA+++D      V   F    +  +++   L++     
Sbjct: 1403 VDYWVTISEPPKCLADVIEAYTAAIFVDAEFDFSVVQDFFNMHLKPFFEDMTLEAYENFA 1462

Query: 154  RRDAKTEL 161
                 T L
Sbjct: 1463 SNHPTTRL 1470



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 51/160 (31%), Gaps = 49/160 (30%)

Query: 20   RSLLEKALTHSS------------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             +L  +ALT  S                   +YERLEFLGD  L +  S  +F       
Sbjct: 1065 PALALEALTKDSENSEEHGEEKINFKSGMGPNYERLEFLGDCFLKMATSLSVFVQQPDEN 1124

Query: 68   EGELSVRFNSLVSAETCSQVA-------------RELDLASFIRV--------------- 99
            E E  VR   ++  +   + A             R++ L ++IR                
Sbjct: 1125 EFEFHVRRMEMLCNKNLLETAIGKKKVTSVDGTERDIKLYNYIRTDSFSRRTWYPDGMKL 1184

Query: 100  --SSDLRKD-------VCSFMTSIQADVVESLIAALYLDG 130
                 + K          +      ADV E+ I A + + 
Sbjct: 1185 LRGKGVNKSEDDWLKLTHNLGDKSIADVCEAFIGAAFQEH 1224


>gi|114600833|ref|XP_001157148.1| PREDICTED: ribonuclease III, nuclear isoform 2 [Pan troglodytes]
          Length = 1193

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 2/93 (2%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ +  LF H
Sbjct: 1069 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIH 1128

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVARELDLAS 95
            F    EG L++  +SLV+  T ++VA EL++  
Sbjct: 1129 FPDHHEGHLTLLRSSLVNNRTQAKVAEELEIKE 1161



 Score = 98.2 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 54/107 (50%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 926  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 985

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
              +        S +    A+  E+LI A+YL+G +E A     +   
Sbjct: 986  LYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1032


>gi|281205614|gb|EFA79803.1| hypothetical protein PPL_06622 [Polysphondylium pallidum PN500]
          Length = 1043

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 20/144 (13%)

Query: 18  ANRSLLEKALTHSSISHSY----------------QESYERLEFLGDRILGLLISTLLFN 61
            N+ LL +  TH SI+ +                 +   +RLE+ GD IL   I+  L+ 
Sbjct: 665 NNQRLLREVFTHPSINRNNTVPPRSLKVFKDYQLFKSDNQRLEYFGDSILKFCITYYLYF 724

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            + +A EG L+ + + + S      +  +  +   +R+   L            ADV+E+
Sbjct: 725 LYPNAPEGFLTTKRSEVTSNTYLQNICDQTSIDDILRLG--LSNTEDYKKPK--ADVIEA 780

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ 145
           L AA+YL+ GI V   F+     +
Sbjct: 781 LFAAVYLECGINVVYEFIINLLFK 804



 Score = 90.1 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 10/130 (7%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
                +  L ++A+   + S   + +Y+RLEFLGD  + L++S  L+++F   +EG LS 
Sbjct: 835 NINIKDTCLFQEAM---NCSSDPKMNYQRLEFLGDSYIDLVVSEFLYHNFPREQEGFLSQ 891

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
               LV  E  +  A      + +R+   +   V      +  D+ ES    L LDGG++
Sbjct: 892 TRALLVRNEKLANTA------NHLRIRQSIDPSVVPTTKRM-GDLFESFTGCLLLDGGLQ 944

Query: 134 VAGTFVDKYW 143
              +F+ K+ 
Sbjct: 945 DTKSFLIKHL 954



 Score = 61.6 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 13/74 (17%)

Query: 156 DAKTELQEWAHAKFGVTPEYK----VTFRSGPDHDPRF---TVVVEISGLAP-AQGMDCS 207
           + K  LQE    +  V+P Y     +T   G      F    V V   G     +G   S
Sbjct: 4   NHKGILQELCQKRKEVSPVYTKPTIITDIGGN-----FYYTEVTVNFKGQRFTGEGKARS 58

Query: 208 KRAAEQVAAAEVLK 221
           K+ AE+ AA   L+
Sbjct: 59  KKDAEKTAALNALQ 72


>gi|327349134|gb|EGE77991.1| dicer [Ajellomyces dermatitidis ATCC 18188]
          Length = 1482

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 83/235 (35%), Gaps = 68/235 (28%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            +  +E  +GY+F  +  L +A TH S   S   SY+RLEF+GD IL  +I   LFN   +
Sbjct: 1151 FQEIESLLGYSFNKKVFLVQAFTHPSNPGSTTSSYQRLEFVGDAILDHIIVHHLFNSSRN 1210

Query: 66   AKEGELSVRFNSLVSAETCSQVA--------------------------RELDLASFIRV 99
                ++ +   +L +A+  + +                           R++ L  ++R 
Sbjct: 1211 LPHFDMHLMRTALANADFLAFLCIGMSTEQARSEVVESSKKNTVTSLTTRKVFLWQYMRH 1270

Query: 100  SSD------------------------LRKDVCS--------FMTSIQADVVESLIAALY 127
             +                         L K                  +D++ES++ A++
Sbjct: 1271 GTSWELAAAQQQTADQYQKLQADISEALEKSNTYPWTLLSRLRAQKFFSDLIESVLGAIF 1330

Query: 128  LD--GGIEVAGTFVDK-----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
            +D  G ++    F+++     + ++  ++        K   Q        +   Y
Sbjct: 1331 IDSHGSLDACTAFLERIGLMKFLRRMLVEESMDIMHPK---QRLGQEVGRMKVRY 1382



 Score = 72.0 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 20/149 (13%)

Query: 15   YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
             AF + SL+  A++ +S++     +Y+R+EFLGD IL    +  L        EG LS  
Sbjct: 976  VAFTDLSLVVTAIS-ASVAREAT-NYQRIEFLGDSILKFHTTLQLSAANLVWHEGLLSRA 1033

Query: 75   FNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDVCSFM-TSIQA 116
             +++VS +  S  A E  L  FI                  + S+ +      M T   A
Sbjct: 1034 KDNVVSNKRLSYAAVETGLDKFILVDVFTGAKWRPRYNKVHLESEEQGIPQREMTTKTLA 1093

Query: 117  DVVESLIAALYLDGGIEVAGTFVDKYWKQ 145
            DVVE+L+ A  ++GG       ++ +  +
Sbjct: 1094 DVVEALLGAATIEGGETKTEKCLEIFLPE 1122


>gi|239610437|gb|EEQ87424.1| dicer-like protein 2 [Ajellomyces dermatitidis ER-3]
          Length = 1509

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 83/235 (35%), Gaps = 68/235 (28%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            +  +E  +GY+F  +  L +A TH S   S   SY+RLEF+GD IL  +I   LFN   +
Sbjct: 1177 FQEIESLLGYSFNKKVFLVQAFTHPSNPGSTTSSYQRLEFVGDAILDHIIVHHLFNSSRN 1236

Query: 66   AKEGELSVRFNSLVSAETCSQVA--------------------------RELDLASFIRV 99
                ++ +   +L +A+  + +                           R++ L  ++R 
Sbjct: 1237 LPHFDMHLMRTALANADFLAFLCIGMSTEQARSEVVESSKKNTVTSLTTRKVFLWQYMRH 1296

Query: 100  SSD------------------------LRKDVCS--------FMTSIQADVVESLIAALY 127
             +                         L K                  +D++ES++ A++
Sbjct: 1297 GTSWELAAAQQQTADQYQKLQADISEALEKSNTYPWTLLSRLRAQKFFSDLIESVLGAIF 1356

Query: 128  LD--GGIEVAGTFVDK-----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
            +D  G ++    F+++     + ++  ++        K   Q        +   Y
Sbjct: 1357 IDSHGSLDACTAFLERIGLMKFLRRMLVEESMDIMHPK---QRLGQEVGRMKVRY 1408



 Score = 72.0 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 20/149 (13%)

Query: 15   YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
             AF + SL+  A++ +S++     +Y+R+EFLGD IL    +  L        EG LS  
Sbjct: 1002 VAFTDLSLVVTAIS-ASVAREAT-NYQRIEFLGDSILKFHTTLQLSAANLVWHEGLLSRA 1059

Query: 75   FNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDVCSFM-TSIQA 116
             +++VS +  S  A E  L  FI                  + S+ +      M T   A
Sbjct: 1060 KDNVVSNKRLSYAAVETGLDKFILVDVFTGAKWRPRYNKVHLESEEQGIPQREMTTKTLA 1119

Query: 117  DVVESLIAALYLDGGIEVAGTFVDKYWKQ 145
            DVVE+L+ A  ++GG       ++ +  +
Sbjct: 1120 DVVEALLGAATIEGGETKTEKCLEIFLPE 1148


>gi|261195592|ref|XP_002624200.1| dicer-like protein 2 [Ajellomyces dermatitidis SLH14081]
 gi|239588072|gb|EEQ70715.1| dicer-like protein 2 [Ajellomyces dermatitidis SLH14081]
          Length = 1509

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 83/235 (35%), Gaps = 68/235 (28%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            +  +E  +GY+F  +  L +A TH S   S   SY+RLEF+GD IL  +I   LFN   +
Sbjct: 1177 FQEIESLLGYSFNKKVFLVQAFTHPSNPGSTTSSYQRLEFVGDAILDHIIVHHLFNSSRN 1236

Query: 66   AKEGELSVRFNSLVSAETCSQVA--------------------------RELDLASFIRV 99
                ++ +   +L +A+  + +                           R++ L  ++R 
Sbjct: 1237 LPHFDMHLMRTALANADFLAFLCIGMSTEQARSEVVESSKKNTVTSLTTRKVFLWQYMRH 1296

Query: 100  SSD------------------------LRKDVCS--------FMTSIQADVVESLIAALY 127
             +                         L K                  +D++ES++ A++
Sbjct: 1297 GTSWELAAAQQQTANQYQKLQADISEALEKSNTYPWTLLSRLRAQKFFSDLIESVLGAIF 1356

Query: 128  LD--GGIEVAGTFVDK-----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
            +D  G ++    F+++     + ++  ++        K   Q        +   Y
Sbjct: 1357 IDSHGSLDACTAFLERIGLMKFLRRMLVEESMDIMHPK---QRLGQEVGRMKVRY 1408



 Score = 72.0 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 20/149 (13%)

Query: 15   YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
             AF + SL+  A++ +S++     +Y+R+EFLGD IL    +  L        EG LS  
Sbjct: 1002 VAFTDLSLVVTAIS-ASVAREAT-NYQRIEFLGDSILKFHTTLQLSAANLVWHEGLLSRA 1059

Query: 75   FNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDVCSFM-TSIQA 116
             +++VS +  S  A E  L  FI                  + S+ +      M T   A
Sbjct: 1060 KDNVVSNKRLSYAAVETGLDKFILVDVFTGAKWRPRYNKVHLESEEQGIPQREMTTKTLA 1119

Query: 117  DVVESLIAALYLDGGIEVAGTFVDKYWKQ 145
            DVVE+L+ A  ++GG       ++ +  +
Sbjct: 1120 DVVEALLGAATIEGGETKTEKCLEIFLPE 1148


>gi|330802362|ref|XP_003289187.1| hypothetical protein DICPUDRAFT_79950 [Dictyostelium purpureum]
 gi|325080763|gb|EGC34305.1| hypothetical protein DICPUDRAFT_79950 [Dictyostelium purpureum]
          Length = 1059

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/139 (28%), Positives = 60/139 (43%), Gaps = 10/139 (7%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               TL   +     + SLLE+A      S     +Y+RLEF+GD +L  + +  L+  F 
Sbjct: 908  DLRTLLFNLDLRIDHPSLLEEAF-----SSGTNVNYQRLEFVGDGVLDYITADYLYKEFP 962

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
               EG L+   + LV     S  ++ L L   I   +D  +   +       D  ESL+ 
Sbjct: 963  EYNEGTLTEFRSRLVRNNNLSDASKRLKLPPNI---TDEER--AALPPKRLGDYFESLVG 1017

Query: 125  ALYLDGGIEVAGTFVDKYW 143
             L LD G+E    FV K+ 
Sbjct: 1018 CLVLDRGVEETKQFVKKHL 1036



 Score = 96.7 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 24/156 (15%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSIS-----------------HSYQESYERLEFL 46
           +R +    RI  +  +  +L +A TH S                   + Y    +RLE+L
Sbjct: 736 VRLAQFNTRI-VSLKSYKILREAFTHPSTKASNRLIPPSELPMFKDYYPYLGDNQRLEYL 794

Query: 47  GDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD 106
           GD +L L  S  LF  +  +KEG LS+   + +  +   +V++ + L   +R+S+     
Sbjct: 795 GDSVLKLASSIYLFYKYSGSKEGALSMERANNIKNDNLIEVSKRMHLDEILRLSNSDE-- 852

Query: 107 VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
               +    ADV+E+L  A+ LD G E A   + +Y
Sbjct: 853 ----IKKPHADVIEALFGAISLDRGFEKAYEIIVRY 884



 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           KT+L E+   +      Y  +   G +H+  F  +V ++          +K+ AE+  A 
Sbjct: 5   KTQLNEYIQKRKLPNIVY-TSESRGSEHNKDFKTIVIVNNRRIESEWRKNKKDAEKDCAT 63

Query: 218 EVLK 221
            +L+
Sbjct: 64  HILE 67


>gi|320585938|gb|EFW98617.1| RNA helicase rnase [Grosmannia clavigera kw1407]
          Length = 2671

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 65/329 (19%), Positives = 105/329 (31%), Gaps = 114/329 (34%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLF----N 61
            +TLE+ +GY F   SLL +A+TH S          ERLEF+GD +L  +I   L      
Sbjct: 1241 TTLEELLGYQFRRPSLLAEAMTHPSTPGIREGGCMERLEFIGDAVLDYVIVQRLLGGKGG 1300

Query: 62   HFDSAKEGELSVRFNSLVSAETCSQVARELD----------------------LASFIRV 99
                 +  ++ +   ++V+A      A E                        L +F+R 
Sbjct: 1301 KRLDLEHQKMHLLRTTVVNAAFLGFAAMEFSISSEASTVTADGTVTRGEIATPLWAFMRH 1360

Query: 100  S---------SDLRKDVCSFMTSIQA-----------------------DVVESLIAALY 127
                         +K   +   S+ A                       D+VE++I A++
Sbjct: 1361 GGSDEMARMQKAAQKRHAALRESVLAALWEGSEYPWVQLAQLRLEKGFSDIVEAVIGAVW 1420

Query: 128  LDGG-IEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT---- 178
            +D G +      ++K     + QRAL      R  K   +E           Y+V     
Sbjct: 1421 VDAGSLGPVEALLEKMGVLSYLQRALDEDVHLRHPK---EELGRISGNARLHYRVAAGES 1477

Query: 179  --------------------------------------FRSG--PDHDPRFTVVVEISGL 198
                                                     G   D  P FT  + I+G+
Sbjct: 1478 VLPPLAEVRRKRRRDEEAAQDESSDEDEDEEGDEKREGKEEGARADQAPIFTCRLSINGV 1537

Query: 199  APAQG-MDCSKRAAEQVAAAEVLK--REG 224
               +     S+  AE  AAA  ++  +EG
Sbjct: 1538 CVVEILDGRSREEAEVRAAAIAVRDLKEG 1566



 Score = 79.0 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 17/144 (11%)

Query: 18   ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
            ++RSL+  A+  S+ +    ++YE LEF+GD +L L+ +         A EG LS+  + 
Sbjct: 1073 SDRSLITTAI--SAPAARLHDNYEVLEFIGDAVLKLMAAANCAAQNLDAPEGHLSLFKDR 1130

Query: 78   LVSAETCSQVARELDLASFIRVS------------SDLRKDVCSF---MTSIQADVVESL 122
            LV+     + A E  L  FI  S                +         T   ADVVE+L
Sbjct: 1131 LVANSRLCRAATEFGLDRFIVGSQWSLREWRDVKIEAEEEKGGEQLVMSTKTLADVVEAL 1190

Query: 123  IAALYLDGGIEVAGTFVDKYWKQR 146
            I A  +DGG+  A   +     +R
Sbjct: 1191 IGAALVDGGLTRALECMRILLPER 1214


>gi|154150151|ref|YP_001403769.1| ribonuclease III [Candidatus Methanoregula boonei 6A8]
 gi|153998703|gb|ABS55126.1| ribonuclease III [Methanoregula boonei 6A8]
          Length = 196

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 65/154 (42%), Gaps = 9/154 (5%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY------ERLEFLGDRILGLLI 55
                + LE+ IGY F  +  L +ALTHS+ ++   +        +    LGD +L   +
Sbjct: 6   KKENLAELERIIGYHFFEQQHLIRALTHSAYANEVIQKNRICLTQDAYSTLGDAVLKTSL 65

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
              L       K G ++     L    + +Q+ R L +  F+R+    +    S   +I 
Sbjct: 66  ILFLMEKGLQEK-GAITRAKEQLEDNASLAQIGRRLKIRRFVRLGRGEKDLWKSGEDTIL 124

Query: 116 ADVVESLIAALYLDG--GIEVAGTFVDKYWKQRA 147
           AD VE++I A+YLD    + V    +  + +   
Sbjct: 125 ADTVEAIIGAVYLDSDASLGVVRQCIGAWLEPEL 158


>gi|257058554|ref|YP_003136442.1| ribonuclease III [Cyanothece sp. PCC 8802]
 gi|256588720|gb|ACU99606.1| ribonuclease III [Cyanothece sp. PCC 8802]
          Length = 323

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/151 (25%), Positives = 69/151 (45%), Gaps = 7/151 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSIS---HSYQESYERLEFLGDRILGLLISTLLFN 61
           + S++E +IG  F N  LL   L H S +   +  ++  ERLE+LG+ IL L+I+  L+ 
Sbjct: 4   KSSSVEDKIGINFKNSELLFLCLIHPSYAQQINEPEKDNERLEYLGETILRLVITDYLYQ 63

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLAS---FIRVSSDLRKDVCSFMTSIQADV 118
           +       +LS   + L   E  + +   L L     F+ +  D R  +     +     
Sbjct: 64  NCPYLAVSKLSALRDKLEEGERLTTLWFNLGLGETFPFLAL-KDERYRLKIKRNNPFEKA 122

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALK 149
           +++L+ AL +D G      +++K      L+
Sbjct: 123 LKALVGALEIDRGYSQTYNWLNKQLIAPLLE 153



 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 56/134 (41%), Gaps = 19/134 (14%)

Query: 34  HSYQESYER------LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
              +++ ER      L+FLGD +   +++  L+          L+  + +LVS+E     
Sbjct: 154 RHLKKNQERVFPEKQLKFLGDALYKAIVTDYLYRLLPYINPPRLTKVYKTLVSSE----- 208

Query: 88  ARELDLASFI-RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK---YW 143
                 + +I +++S+  + + +    I  +    ++ A+YL    E + T   K   +W
Sbjct: 209 ----KESDYISKITSEDWQIINNQNPKIPNNSFSCILGAMYLYFSQENSKTSFRKTGEWW 264

Query: 144 KQRALKSGKFRRDA 157
            +  +   +   DA
Sbjct: 265 IKNCVDEEEVWHDA 278


>gi|218245517|ref|YP_002370888.1| ribonuclease III [Cyanothece sp. PCC 8801]
 gi|218165995|gb|ACK64732.1| ribonuclease III [Cyanothece sp. PCC 8801]
          Length = 323

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/151 (25%), Positives = 69/151 (45%), Gaps = 7/151 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSIS---HSYQESYERLEFLGDRILGLLISTLLFN 61
           + S++E +IG  F N  LL   L H S +   +  ++  ERLE+LG+ IL L+I+  L+ 
Sbjct: 4   KSSSVEDKIGINFKNSELLFLCLIHPSYAQQINEPEKDNERLEYLGETILRLVITDYLYQ 63

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLAS---FIRVSSDLRKDVCSFMTSIQADV 118
           +       +LS   + L   E  + +   L L     F+ +  D R  +     +     
Sbjct: 64  NCPYLAVSKLSALRDKLEEGERLTTLWFNLGLGETFPFLAL-KDERYRLKIKRNNPFEKA 122

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALK 149
           +++L+ AL +D G      +++K      L+
Sbjct: 123 LKALVGALEIDRGYSQTYNWLNKQLIAPLLE 153



 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 56/134 (41%), Gaps = 19/134 (14%)

Query: 34  HSYQESYER------LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
              +++ ER      L+FLGD +   +++  L+          L+  + +LVS+E     
Sbjct: 154 RHLKKNQERVFPEKQLKFLGDALYKAIVTDYLYRLLPYINPPRLTKVYKTLVSSE----- 208

Query: 88  ARELDLASFI-RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK---YW 143
                 + +I +++S+  + + +    I  +    ++ A+YL    E + T   K   +W
Sbjct: 209 ----KESDYISKITSEDWQIINNQNPKIPNNSFSCILGAMYLYFSQENSKTSFKKTGEWW 264

Query: 144 KQRALKSGKFRRDA 157
            +  +   +   DA
Sbjct: 265 IKNCVDEEEVWHDA 278


>gi|302687578|ref|XP_003033469.1| hypothetical protein SCHCODRAFT_37756 [Schizophyllum commune H4-8]
 gi|300107163|gb|EFI98566.1| hypothetical protein SCHCODRAFT_37756 [Schizophyllum commune H4-8]
          Length = 1343

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/208 (22%), Positives = 76/208 (36%), Gaps = 61/208 (29%)

Query: 3    ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-ESYERLEFLGDRILGLLISTLLFN 61
                  +E+ +GY F  ++LL +ALTH+S        SY RLEFLGD +L + ++  +F 
Sbjct: 1124 PAELQYVERMLGYTFERKALLIEALTHASYQEPLPTPSYGRLEFLGDAVLDMAVTPYIFA 1183

Query: 62   HFDSAKEGELSVRFNSLVSAETCSQVA---------------------------RELDLA 94
               +   G + +R ++ V+    + V                            +++ L 
Sbjct: 1184 SKKNYSPGHIHLRRSAAVNMHFLAFVCLRAKVAVDKHMPRPTAPDWRVQMATESQDIYLW 1243

Query: 95   SFIRVSS-----DLRKDVCSFM--------------------------TSIQADVVESLI 123
              +  SS     D       F                               +DVVESLI
Sbjct: 1244 QCMLHSSSTVIDDQNNTFARFRRLEKEISEALETGDIFPWAALTRMQAPKFFSDVVESLI 1303

Query: 124  AALYLD--GGIEVAGTFVDKYWKQRALK 149
             A++LD  G +E+A   +      R L+
Sbjct: 1304 GAVFLDAEGDMEIATDVIRTLGIMRVLE 1331



 Score = 61.2 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 34/149 (22%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
            +SL+  A+T          +Y+RLE +GD +L  L+S  L+  +    EG L+ + +  V
Sbjct: 956  QSLMSVAMTAP--VSQEPVNYQRLETMGDTVLKYLVSIQLYAEYPLWHEGYLAKQKDHTV 1013

Query: 80   SAETCSQVARELDL-------------------------ASFIRVSSDLRKDVCSFMTSI 114
            S    ++++    +                          + ++++S+L         S+
Sbjct: 1014 SNVRLAKISVRRHIFQWIIREKNKPKKKKKKDNNQLSTKGTVLKITSELLLT----KLSV 1069

Query: 115  QADVVESLIAALYLDGGIE---VAGTFVD 140
             ADV+ESLI A Y+ GG+        F D
Sbjct: 1070 LADVIESLIGAAYVHGGLSLGRACAQFFD 1098


>gi|166240125|ref|XP_647462.2| hypothetical protein DDB_G0268410 [Dictyostelium discoideum AX4]
 gi|165988755|gb|EAL73658.2| hypothetical protein DDB_G0268410 [Dictyostelium discoideum AX4]
          Length = 1385

 Score = 99.8 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/152 (28%), Positives = 68/152 (44%), Gaps = 7/152 (4%)

Query: 1    MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
            ++          IG   ++ SLLE+AL      HS  +SY+RLE++GD +L   +S  L+
Sbjct: 1210 LAHQEIRAFLDGIGVHISHSSLLEEALCFPYSFHSASKSYQRLEYVGDAVLDFFVSDFLY 1269

Query: 61   NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
              F  A+EG+L+   + LV     S ++R+L L     VS  +R            D +E
Sbjct: 1270 ATFPLAQEGQLTDYRSRLVRNSNLSSISRKLCLPP--TVSKGIRDT---LPIKKLGDYLE 1324

Query: 121  SLIAALYLD--GGIEVAGTFVDKYWKQRALKS 150
            S I   ++D     E   + V KY   R    
Sbjct: 1325 SFIGCCFVDTTQSFEYTKSLVYKYLDLRIDNP 1356



 Score = 96.7 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 67/199 (33%), Gaps = 46/199 (23%)

Query: 18   ANRSLLEKALTHSSIS----------------HSYQESYERLEFLGDRILGLLISTLLFN 61
             +  +L +  TH S                    Y    +RLEFLGD +L L+ +  LF 
Sbjct: 1056 KSAKILREVFTHPSTKTIPKRTLTQLGIFGKYQPYLGDNQRLEFLGDSVLKLVSTIYLFF 1115

Query: 62   HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
             +    EG LS   +     +    V++ L L   +R +++            QADV+E+
Sbjct: 1116 KYPKMSEGFLSQTRSDFTKNDHLLDVSKRLGLEEILRFTTEEEFR------KPQADVIEA 1169

Query: 122  LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            LI A+Y+D G   A      +                    E+        P Y   F  
Sbjct: 1170 LIGAVYIDRGFFEAYKLTVCWIFDEPDA-------------EY--------PIYNTKFEE 1208

Query: 182  GPDHDPRFTVVVEISGLAP 200
               H     +   + G+  
Sbjct: 1209 TLAHQ---EIRAFLDGIGV 1224



 Score = 61.2 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           K +L EW   +      Y  T   G +H+  F  +V ++G         +K+ +E+  A 
Sbjct: 10  KVQLNEWLQKRKLPLSIYH-TEYKGSEHNKDFKSIVIVNGKEIESDWKKTKKESEKDCAK 68

Query: 218 EVLK 221
            +L+
Sbjct: 69  RILE 72


>gi|71017953|ref|XP_759207.1| hypothetical protein UM03060.1 [Ustilago maydis 521]
 gi|46098828|gb|EAK84061.1| hypothetical protein UM03060.1 [Ustilago maydis 521]
          Length = 469

 Score = 99.8 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 78/217 (35%), Gaps = 27/217 (12%)

Query: 34  HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL 93
               E +  L  +G+ +LG+L +  L   + +     L    ++ V   T S V  EL L
Sbjct: 204 SEGVEHHAALATVGNSLLGMLATEHLHLRYPNLPTRVLKAAVSAYVGPSTLSDVGSELGL 263

Query: 94  A--SFIRVSSDLRKDVCSFMTS----------------------IQADVVESLIAALYLD 129
           A  + +R +   R     F  +                      + AD + +++A ++ +
Sbjct: 264 AAQNILRWNKQARAPGSGFTQNRGGRGAAPRSTNSATRTLLSRDVAADAMRAIVAVIFQE 323

Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGP-DHD 186
            G+  A  FV  ++  R        +  D K  L           P+ ++   SG     
Sbjct: 324 QGLSAARNFVTSHFLSRGFNLSALLKFNDPKHALSSTCAKYGKSPPQSRMIAESGRLSIS 383

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           P F V V        +G   S R AE  AA + L+R 
Sbjct: 384 PVFVVGVWSGETKIGEGSGSSIRMAEFRAAEDALRRL 420


>gi|121807817|sp|Q2VF19|DCL1_CRYPA RecName: Full=Dicer-like protein 1; Includes: RecName:
            Full=Endoribonuclease DCL-1; Includes: RecName:
            Full=ATP-dependent helicase DCL-1
 gi|77632774|gb|ABB00356.1| dicer-like protein 1 [Cryphonectria parasitica]
          Length = 1548

 Score = 99.8 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 45/268 (16%), Positives = 78/268 (29%), Gaps = 53/268 (19%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
             + +  GY F +  +L  A  H S          Y+RLEFLGD +  +     LF+    
Sbjct: 1250 KIHEATGYQFKHPRVLRSAFRHPSRPYVFDKVPHYQRLEFLGDALFDMACVDYLFHIAPD 1309

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF--------------- 110
                 L+    ++VS +    +A  L    FI                            
Sbjct: 1310 EGPQWLTEHKMAMVSNQFLGCLAVSLGFHKFILHHHASIGSQIHEYVTEITEARRAAEDA 1369

Query: 111  ---------------------MTSIQADVVESLIAALYLDGGIE--VAGTF----VDKYW 143
                                       DV+E+ + A+++D   +  V   F    V  ++
Sbjct: 1370 AEAAGKPRSAYSRDYWVEAPQPPKCIPDVLEAYVGAIFVDSKYDYSVVQQFFHAHVLPFF 1429

Query: 144  KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--------FTVVVEI 195
                +      +   T   ++    FG    Y +     P  D              + +
Sbjct: 1430 ASMRMYDTFANKHPVTFFTQYVFETFGCH-AYGLHAEEMPVKDDTGLVTGKTQVVAGILL 1488

Query: 196  SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             G      +  S R A+  AA + L + 
Sbjct: 1489 HGQVVEGAVRDSGRYAKIAAARKALDKL 1516



 Score = 61.6 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 54/161 (33%), Gaps = 28/161 (17%)

Query: 24   EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83
             +A    +       +YERLE LGD  L +  +  +F    +  E +       ++  + 
Sbjct: 1067 IQAFEPVNFQPGMGANYERLELLGDSFLKMATTIAVFTLIPNKDEFDYHCERMVMICNQN 1126

Query: 84   CSQVAR--ELDLASFIRVSSDLR---------------------KDVCSFMTSIQADVVE 120
               VA+  +L L  +IR  S  R                      D         ADV E
Sbjct: 1127 LFGVAKSDDLKLHEYIRSKSFERGTWYPVLKLEFGKTHLKTLKQMDEHRLADKSIADVCE 1186

Query: 121  SLIAALYLDG----GIEVAGTFVDKYWKQRALKSGKFRRDA 157
            +LI A Y+        ++A   V +    +     K+  D 
Sbjct: 1187 ALIGAAYMTTRKHDDYDLAVRAVTRLVNHKQHPMTKWD-DY 1226


>gi|312213183|emb|CBX93265.1| similar to dicer-like protein 2 [Leptosphaeria maculans]
          Length = 1393

 Score = 99.8 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 75/213 (35%), Gaps = 57/213 (26%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             STLE+ IG+ F+ + LL  A+TH+S    +    Y+R EFLGD +L  +I+  L+ H  
Sbjct: 1089 LSTLERLIGHTFSKKFLLLDAITHASYLGPNVHCDYQRTEFLGDAVLDFIITKRLYAHTP 1148

Query: 65   SAKEGELSVRFNSLVSAETCSQVAREL-------------------DLASFIRVSSD--- 102
              +   +     ++V+A   +    E                     L  F+R  +    
Sbjct: 1149 PLEHQTMHAIRTAMVNASFLAFRMFETTIDEHLTNKATLQTDVQSRALWQFLRSGAPQVN 1208

Query: 103  -------LRKDVCS---------------------FMTSIQADVVESLIAALYLD--GGI 132
                    +                                +D+VES++ A+Y+D  G  
Sbjct: 1209 AAREIAFKQHQEARGQILVALERDARYPWHLLALTDPPKFLSDIVESVLGAIYIDSRGDF 1268

Query: 133  EVAGTFVDKY----WKQRALKSGKFRRDAKTEL 161
             +   FV +       +R L+        K  L
Sbjct: 1269 SICQAFVQRLGILESLERILRDNVDCLHPKERL 1301



 Score = 75.1 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 56/145 (38%), Gaps = 25/145 (17%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            +  LL KALT  S S    E Y++LEF GD IL  + S  L        E  L+ +  ++
Sbjct: 922  DLPLLVKALT--SSSTGEVEDYQQLEFYGDCILKFISSLHLMAANPKEPESFLTQKKGNI 979

Query: 79   VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ--------------------ADV 118
            VS  + ++ +    L  ++      R     +   +                     ADV
Sbjct: 980  VSNGSLTRASLSAGLDRYVITK---RFTGAKWQPRLLVETVTVTSPPNKVKLSSKLIADV 1036

Query: 119  VESLIAALYLDGGIEVAGTFVDKYW 143
            VES+I A ++ GG   A   +    
Sbjct: 1037 VESIIGASFVVGGFPKAFACIQTLL 1061


>gi|258565145|ref|XP_002583317.1| predicted protein [Uncinocarpus reesii 1704]
 gi|237907018|gb|EEP81419.1| predicted protein [Uncinocarpus reesii 1704]
          Length = 1194

 Score = 99.8 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/270 (17%), Positives = 99/270 (36%), Gaps = 70/270 (25%)

Query: 3    ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
            ++    +E+ +GY F  +SL+  ALTH S S + + SY+RLEF+GD +L +++   LF  
Sbjct: 896  SMVLPEIEELLGYTFTKKSLVLAALTHPS-STTSRHSYQRLEFIGDSVLDIIVVQALFGS 954

Query: 63   FDSAKEGELSVRFNSLVSAETCSQVA--------------------------RELDLASF 96
                    + +   +LV+A+  + +                           R+  L  F
Sbjct: 955  PREFAHYNMHLMRTALVNADFLAFLCMNVYVEKDRGEAVENIKKKVKIEMTKRKSHLWGF 1014

Query: 97   IRVS---------------SDLRKDVCSFM-----------------TSIQADVVESLIA 124
            ++ S                +  ++  +                       +D++ES++ 
Sbjct: 1015 MKHSQSWDIVHAQNSAIKQHEELQEEINERLNSSQSYPWTLLCRLDAAKFFSDIIESILG 1074

Query: 125  ALYLD--GGIEVAGTFVDK----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
            A+++D  G +     F+++     + +R L         K   Q   H    ++  Y+ T
Sbjct: 1075 AIFIDSQGSMSACEAFLERIGLMRYVRRVLSENIDFMHPK---QRLGHLANALSVRYE-T 1130

Query: 179  FRSGPDHDPRFTVVVEISGLAPAQ-GMDCS 207
             ++      R+   V +      + G   S
Sbjct: 1131 KQTLESEARRWECTVRVGDEEIVRVGDGIS 1160



 Score = 85.5 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 42/149 (28%), Positives = 61/149 (40%), Gaps = 20/149 (13%)

Query: 15  YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
             F++ SL+  A+  SS       +Y+RLEFLGD +L L  S  L        EG L+ R
Sbjct: 725 VKFSDLSLVLTAI--SSSVAREASNYQRLEFLGDSLLKLYTSIELAAKNLQWPEGLLTSR 782

Query: 75  FNSLVSAETCSQVARELDLASFIR------------------VSSDLRKDVCSFMTSIQA 116
            + +VS    ++ A E  L  FI                    + D         T + A
Sbjct: 783 KSHVVSNSHLAKAATETGLDRFILTKPFSGAKWRPSYNTDHVHAGDEEGSPRVMSTKVLA 842

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQ 145
           DVVE+LI A  +DG  E     +  +  +
Sbjct: 843 DVVEALIGAANIDGADEKTLDCLKVFLPE 871


>gi|254572848|ref|XP_002493533.1| RNAase III [Pichia pastoris GS115]
 gi|238033332|emb|CAY71354.1| RNAase III [Pichia pastoris GS115]
 gi|328354643|emb|CCA41040.1| ribonuclease III [Pichia pastoris CBS 7435]
          Length = 524

 Score = 99.4 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 58/224 (25%), Positives = 97/224 (43%), Gaps = 26/224 (11%)

Query: 18  ANRSLLEKALTHSSISHSYQES--------YERLEFLGDRILGLLISTLLFNHFDSAKEG 69
            +  L  K  TH S     +E         YERLE+LGD +L L +++++   F ++ EG
Sbjct: 168 TDPVLRSKVFTHKSAVTQAEEDSIEAANSSYERLEYLGDAVLELAVTSIVMKEFPASSEG 227

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFI--RVSSDLRKDVCSFMTSIQADVVESLIAALY 127
            LSV    +VS       ++       +   +S +           I AD+ E+ I ALY
Sbjct: 228 HLSVCRQQIVSNSNLENYSKLYGFPEKLSSLMSKEE---TDKNNGKIYADIFEAYIGALY 284

Query: 128 LDGG--IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKF-------GVTPEYKVT 178
           +     + +   ++ K   +  +++ K +RD K+ L + A  K           P+Y VT
Sbjct: 285 VQNNNDLTMIQEWLGKL-ARPVIEAMKMKRD-KSYLNKSAKEKLYALIGSAKSAPKY-VT 341

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             +GP  D  + V VE+ G    +G+  S + A   AA   L+ 
Sbjct: 342 LDNGPARD-EWLVQVEMEGEIIGKGIGGSVKDARTRAAMAALEN 384


>gi|296812107|ref|XP_002846391.1| dicer-like protein 2 [Arthroderma otae CBS 113480]
 gi|238841647|gb|EEQ31309.1| dicer-like protein 2 [Arthroderma otae CBS 113480]
          Length = 1437

 Score = 99.4 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 54/282 (19%), Positives = 102/282 (36%), Gaps = 71/282 (25%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
             S +E  I Y+F  ++LL  +L+H S +     +Y+RLEFLGD IL  +++  LF     
Sbjct: 1155 LSKIEPLIDYSFTKKALLATSLSHPS-NPISGMTYQRLEFLGDSILDSIVTRALFRSNKE 1213

Query: 66   AKEGELSVRFNSLVSAETCSQVA--------------------------RELDLASFIRV 99
                ++ +   +LV+A+  + +                           R + L  ++  
Sbjct: 1214 IPHQDMHLMRTALVNADYLAFLCMNTSTDEQREDVSASSIGKVEITSSTRRVSLWQYMSH 1273

Query: 100  SSDLR-----------------------KDVCSF---------MTSIQADVVESLIAALY 127
            S+ L                        +    +              +D++ES++ A++
Sbjct: 1274 SAALDIANAQLATVRKFEELREKIDEALRSGTRYPWTLLLTLNAPKFFSDIIESILGAIF 1333

Query: 128  LD--GGIEVAGTFVDKY----WKQRALKSGKF-RRDAKTELQEWAHAKFGVTPEYKVTFR 180
            +D  G +E   TF+ +     +  R L  G       K  L +   +   +T +Y V+  
Sbjct: 1334 IDSRGSVEACQTFLSRIGLMGYLNRVLDDGNIDFMHPKQRLGQIVQS---LTVKYIVSDV 1390

Query: 181  SGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVLK 221
                   R+   + +      Q     S+  AE  AA   L+
Sbjct: 1391 H-KHGVMRWNCQILVGDQEICQINDGVSRIHAETKAAEIALE 1431



 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 56/149 (37%), Gaps = 22/149 (14%)

Query: 17   FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
            F +  L+  A++ SS       +Y+RLEFLGD  L L  S  L        EG LS +  
Sbjct: 980  FKDIQLVLTAISASSA--RESTNYQRLEFLGDSALKLHTSMQLLVDHPFWHEGLLSHKKG 1037

Query: 77   SLVSAETCSQVARELDLASFIRV--------------------SSDLRKDVCSFMTSIQA 116
             ++S     +   E  L  FI                          +       T   A
Sbjct: 1038 FIISNSRLWKATIETGLDRFILTACFTGAKWRPLYNSTYTANAGRVGKNSTREISTKTLA 1097

Query: 117  DVVESLIAALYLDGGIEVAGTFVDKYWKQ 145
            DVVE+LI A  +DGG + A   +  +  +
Sbjct: 1098 DVVEALIGAAIVDGGEDKALHCLQVFLPE 1126


>gi|119182644|ref|XP_001242444.1| hypothetical protein CIMG_06340 [Coccidioides immitis RS]
          Length = 390

 Score = 99.4 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 80/207 (38%), Gaps = 23/207 (11%)

Query: 18  ANRSLLEKALTH-----SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            +++L     TH     +    +   SY+RLE LGD  L ++ + L+++ F +   G +S
Sbjct: 142 KDKTLETAVFTHQGEVHAQAPSAVHSSYDRLEILGDAYLEVIATRLIWDRFQTLPAGRMS 201

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD--- 129
                LV  ET +Q +        +++++D+R     +M  ++ D+ E+ +AA+ L    
Sbjct: 202 QIRELLVKNETLAQFSERYGFDRRVKIATDIRSQAKRWM-KVKGDIFEAYVAAVILSDPV 260

Query: 130 GGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
            G  +   ++   W      ++        K  L +    K      Y     S P +  
Sbjct: 261 NGFNLVEEWLAHLWIPTLNHVQPENQAAHYKETLAKKVMGKGIKL-RY--INESPPVNRK 317

Query: 188 ----RFTVVVEISG-----LAPAQGMD 205
                F + V ++G          G  
Sbjct: 318 GGMQTFFIGVYLTGWGWQDQHLGSGSG 344


>gi|125526376|gb|EAY74490.1| hypothetical protein OsI_02382 [Oryza sativa Indica Group]
          Length = 256

 Score = 99.0 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 45/181 (24%), Positives = 83/181 (45%), Gaps = 23/181 (12%)

Query: 7   STLEKRIG-YAFANRS--LLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLF 60
           + +E+ +G Y+F +    LLE ALTHS         +  ++RLEFLGD  LGL  +T+ +
Sbjct: 22  AEVERALGGYSFRDGGALLLEDALTHSVHPRDEAGGRARHQRLEFLGDAALGLAFATIFY 81

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVAR----------------ELDLASFIRVSSDLR 104
                  +G+L+V  ++ VS +  ++VA                 + +++ F +    L 
Sbjct: 82  RDDPGLDQGDLTVLRSANVSTQKLARVAVRRRLYPLLRRYNCAPQDHEVSRFTKSVEGLY 141

Query: 105 KDVCSFMTSIQADVVESLIAALYLDGGIEV-AGTFVDKYWKQRALKSGKFRRDAKTELQE 163
                    + AD+VE+++ A+YLD  +++     V K   +  +       D ++ L E
Sbjct: 142 SGDPIEGPRVLADIVEAIVGAVYLDSKLDLEVLQKVAKLLCEPIITKKALLEDPESMLNE 201

Query: 164 W 164
            
Sbjct: 202 L 202


>gi|320040901|gb|EFW22834.1| RNase3 domain-containing protein [Coccidioides posadasii str.
           Silveira]
          Length = 390

 Score = 99.0 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 80/207 (38%), Gaps = 23/207 (11%)

Query: 18  ANRSLLEKALTH-----SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            +++L     TH     +    +   SY+RLE LGD  L ++ + L+++ F +   G +S
Sbjct: 142 KDKTLETAVFTHQGEVHAQAPSAVHSSYDRLEILGDAYLEVIATRLIWDRFQTLPAGRMS 201

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD--- 129
                LV  ET +Q +        ++++SD+R     +M  ++ D+ E+ +AA+ L    
Sbjct: 202 QIRELLVKNETLAQFSERYGFDRRVKIASDIRSQAKRWM-KVKGDIFEAYVAAVILSDPV 260

Query: 130 GGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
            G  +   ++   W      ++        K  L +    K       +    S P +  
Sbjct: 261 NGFNLVEEWLAYLWIPTLNHVQPENQAAHYKETLAKKVMGKGIKL---RYINESPPINRK 317

Query: 188 ----RFTVVVEISG-----LAPAQGMD 205
                F + V ++G          G  
Sbjct: 318 GGMQTFFIGVYLTGWGWQDQHLGSGSG 344


>gi|303319323|ref|XP_003069661.1| RNase3 domain containing protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240109347|gb|EER27516.1| RNase3 domain containing protein [Coccidioides posadasii C735 delta
           SOWgp]
          Length = 390

 Score = 99.0 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 80/207 (38%), Gaps = 23/207 (11%)

Query: 18  ANRSLLEKALTH-----SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            +++L     TH     +    +   SY+RLE LGD  L ++ + L+++ F +   G +S
Sbjct: 142 KDKTLETAVFTHQGEVHAQAPSAVHSSYDRLEILGDAYLEVIATRLIWDRFQTLPAGRMS 201

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD--- 129
                LV  ET +Q +        ++++SD+R     +M  ++ D+ E+ +AA+ L    
Sbjct: 202 QIRELLVKNETLAQFSERYGFDRRVKIASDIRSQAKRWM-KVKGDIFEAYVAAVILSDPV 260

Query: 130 GGIEVAGTFVDKYWKQ--RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
            G  +   ++   W      ++        K  L +    K       +    S P +  
Sbjct: 261 NGFNLVEEWLAYLWIPTLNHVQPENQAAHYKETLAKKVMGKGIKL---RYINESPPINRK 317

Query: 188 ----RFTVVVEISG-----LAPAQGMD 205
                F + V ++G          G  
Sbjct: 318 GGMQTFFIGVYLTGWGWQDQHLGSGSG 344


>gi|302694007|ref|XP_003036682.1| hypothetical protein SCHCODRAFT_102832 [Schizophyllum commune H4-8]
 gi|300110379|gb|EFJ01780.1| hypothetical protein SCHCODRAFT_102832 [Schizophyllum commune H4-8]
          Length = 1489

 Score = 99.0 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 79/192 (41%), Gaps = 34/192 (17%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            ++  IG       LL  ALTH++ + S   +YER+EFLGD +L   +   ++  +     
Sbjct: 1216 VQSVIGQKLNKPELLALALTHAN-NSSPLGNYERIEFLGDALLDFQVVEYVYRKYTQQPP 1274

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSI------------- 114
              L++  +++V     + +  E  L   +   S  +++ + +++T++             
Sbjct: 1275 SVLTLLKSAMVGNSPLAAICAESGLYRHLHQKSHQIQQSINTYLTALQKAKQKEYAAADD 1334

Query: 115  ------------QADVVESLIAALYLDGGIEVA------GTFVDKYWKQRALKSGKFRRD 156
                         +D+VES++ A+Y+   +E          F+  ++ ++ ++       
Sbjct: 1335 DLRERGQYWFDALSDIVESIVGAIYISDDLEWTGVQQLFKHFLQPFY-EKHIRMNTLAVH 1393

Query: 157  AKTELQEWAHAK 168
                L E   ++
Sbjct: 1394 PTKILLELVQSQ 1405



 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 6/88 (6%)

Query: 15   YAFANR---SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF-NHFDSAKEGE 70
              F +     LL  ALT  S    +  +YERLE  GD  L  L S  LF     +  EG+
Sbjct: 986  IHFNHIIAEDLLHAALTTPSAG--FDRNYERLELYGDAFLKYLASLHLFVMSHHNDSEGK 1043

Query: 71   LSVRFNSLVSAETCSQVARELDLASFIR 98
            L      L+S +   + +  L L SF+ 
Sbjct: 1044 LHAARRPLISNQKLMECSLALGLPSFVI 1071


>gi|290989569|ref|XP_002677410.1| hypothetical protein NAEGRDRAFT_48963 [Naegleria gruberi]
 gi|284091017|gb|EFC44666.1| hypothetical protein NAEGRDRAFT_48963 [Naegleria gruberi]
          Length = 1214

 Score = 98.6 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 6/127 (4%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
              LE+ IGY F N       L H S+   +  +YE LEF+GD +L L +S  +F++F   
Sbjct: 1024 KELERIIGYKFKNILYAYYTLIHPSVDIGFNVNYETLEFVGDAVLDLYVSRTMFHNF-YL 1082

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
             + E+    ++ V      ++A++  +   + V  DL+           +DV+E+LI A+
Sbjct: 1083 DQSEMHTFRSNFVRNTALEKIAKDFRIDQLLFVKKDLK-----LKAKSISDVMEALIGAV 1137

Query: 127  YLDGGIE 133
             LD  ++
Sbjct: 1138 ALDSNLD 1144



 Score = 65.1 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 77/192 (40%), Gaps = 38/192 (19%)

Query: 14   GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
            GY   N S L  A+TH + S +   +YER EF GD IL   +   +   F        + 
Sbjct: 850  GY--INLSELRNAITHRT-SQNLDTNYERYEFFGDTILKYAVVLDIVLRFPFENMKFYNE 906

Query: 74   RFNSLVSAETCSQVARELDLASF-------------IRVSSDLRKDVCSFMTSIQADVVE 120
               + VS     ++A++L +  F             I  S   ++        ++AD++E
Sbjct: 907  EKTAKVSNSNLRKLAQKLSIMDFFIETQYYHHNVAGIAFSKSEQEASVKGK-KVRADIIE 965

Query: 121  SLIAAL---YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY-- 175
            SLI  +    ++ G+++A     K  K++   + KF  ++               PEY  
Sbjct: 966  SLIGLVGKHSIEEGVKLARDL--KLVKKQNFIADKFILNS--------------NPEYVK 1009

Query: 176  KVTFRSGPDHDP 187
            ++   + PD + 
Sbjct: 1010 RIIENTIPDIEK 1021


>gi|126177989|ref|YP_001045954.1| ribonuclease III [Methanoculleus marisnigri JR1]
 gi|125860783|gb|ABN55972.1| RNAse III [Methanoculleus marisnigri JR1]
          Length = 156

 Score = 98.6 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 5/138 (3%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLFNHFD 64
           +E+RIGY F +R+LLE+ALT  + +       +   + L  LGD +   +          
Sbjct: 14  IEERIGYTFKDRALLERALTRLAYTLEAGIPPETHMDALATLGDAV-INVAVVEAVVAGG 72

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  +G +S R  +LV+      +A +LDLA ++R               + A+ +E+L+ 
Sbjct: 73  AHDKGAISNRKMNLVNMTRLRGLAEDLDLADYVRWGKGEAAQRVWTSGRVLAECLEALVG 132

Query: 125 ALYLDGGIEVAGTFVDKY 142
           A+YLDGG++ A   + + 
Sbjct: 133 AVYLDGGMDAAAGVLRRL 150


>gi|115401870|ref|XP_001216523.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114190464|gb|EAU32164.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 1635

 Score = 98.2 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 58/278 (20%), Positives = 109/278 (39%), Gaps = 76/278 (27%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
            +L++ +GY F N +LL +ALTH S  S +  +SY+RLEFLGD +L +++   + +H    
Sbjct: 1066 SLKQHLGYTFVNEALLVEALTHPSCRSDASTQSYQRLEFLGDAVLDMVVVHAMAHHAVEC 1125

Query: 67   KEGELSVRFNSLVSAETCSQVARE---------------------------LDLASFIRV 99
             +GE+++  ++L +A   +    E                           ++L  F+R 
Sbjct: 1126 PQGEMTMIKHALTNANLLAFFCMEFVVAQEHTDVDAVPAAGGFALRSEQKPIELWRFMR- 1184

Query: 100  SSDLRKDVCSFMTSIQ----------------------------------ADVVESLIAA 125
                  D+ +   ++                                   +D+VES++ A
Sbjct: 1185 --SEALDLNNARETVLHRHSQLRAEIVHALHHGAQYPWQALSQLNADKFFSDIVESILGA 1242

Query: 126  LYLD--GGIEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            +++D  G ++V   FV++     + +R L         +   Q  +  +   T + +V  
Sbjct: 1243 IFVDSRGDLDVCAMFVERIGLLPYLRRILADRVDVMHPRHTAQRLSKGEALFTAK-RVVD 1301

Query: 180  RSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAA 216
             SG      +  VV+ +         C S   AE  AA
Sbjct: 1302 GSGNA---SYRCVVKRNKEEIVVVEGCLSSEEAEVKAA 1336



 Score = 87.1 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 65/159 (40%), Gaps = 19/159 (11%)

Query: 7    STLEKRI--GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            + L + I     F++   +  A++  +        Y+R EF GD +L   +S  L+    
Sbjct: 891  TRLCETILQDVQFSSTRHVITAISAPTAQSPT--DYQRYEFFGDSVLKFTVSCQLYMQHP 948

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV--------------SSDLRKDVCS- 109
            +  EG LS   + +V     ++ A ++ L +FI                   +       
Sbjct: 949  NWPEGYLSEGRDEIVQNNRLARAALDVGLDAFILTRRFTPRKWTAPLISEKAVEVAGKRP 1008

Query: 110  FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL 148
              + + ADVVESLI A Y+DGG   A T + +   +  +
Sbjct: 1009 LSSKVLADVVESLIGAAYMDGGQAKAHTCIRRLLPEIEI 1047


>gi|115437482|ref|NP_001043306.1| Os01g0551100 [Oryza sativa Japonica Group]
 gi|75105855|sp|Q5JK90|RTL1_ORYSJ RecName: Full=Ribonuclease 3-like protein 1; AltName:
           Full=Ribonuclease III-like protein 1; Short=RNase
           III-like protein 1
 gi|57900069|dbj|BAD88131.1| unknown protein [Oryza sativa Japonica Group]
 gi|57900480|dbj|BAD87969.1| unknown protein [Oryza sativa Japonica Group]
 gi|113532837|dbj|BAF05220.1| Os01g0551100 [Oryza sativa Japonica Group]
 gi|215695480|dbj|BAG90671.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 256

 Score = 98.2 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 44/181 (24%), Positives = 82/181 (45%), Gaps = 23/181 (12%)

Query: 7   STLEKRIG-YAFANRS--LLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLF 60
           + +E+ +G Y+F +    LLE ALTHS         +  ++RLEFLGD  LGL  +T+ +
Sbjct: 22  AEVERALGGYSFRDGGALLLEDALTHSVHPRDEAGGRARHQRLEFLGDAALGLAFATIFY 81

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVAR----------------ELDLASFIRVSSDLR 104
                  +G+L+V  ++ VS +  ++VA                 + +++ F +      
Sbjct: 82  RDDPGLDQGDLTVLRSANVSTQKLARVAVRRRLYPLLRRYNCAPQDHEVSRFTKSVEGPY 141

Query: 105 KDVCSFMTSIQADVVESLIAALYLDGGIEV-AGTFVDKYWKQRALKSGKFRRDAKTELQE 163
                    + AD+VE+++ A+YLD  +++     V K   +  +       D ++ L E
Sbjct: 142 SGDPIEGPRVLADIVEAIVGAVYLDSKLDLEVLQKVAKLLCEPIITKKALLEDPESMLNE 201

Query: 164 W 164
            
Sbjct: 202 L 202


>gi|145540581|ref|XP_001455980.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|74834199|emb|CAI44479.1| Dicer-like ribonuclease with helicase and Rnase III domains
            [Paramecium tetraurelia]
 gi|124423789|emb|CAK88583.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1797

 Score = 98.2 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 46/253 (18%), Positives = 83/253 (32%), Gaps = 77/253 (30%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI-------------------------------- 32
              ++LE  IGY F ++S+L +A+TH S                                 
Sbjct: 1499 NLNSLENIIGYKFNDQSILIQAITHQSFLSVLDFYNYRKCKCNFVEFQNTKNILQISNLN 1558

Query: 33   ---------------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
                            +    SYERLEFLGD +L  ++   L   F+  K  +L+++   
Sbjct: 1559 QNDINESLLTQLNQQQNRIDMSYERLEFLGDSVLDSVVVEWLVKEFNKEKVEDLALKKQC 1618

Query: 78   LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT------------------------- 112
            +V  +  + V     L  F+   +  +    +  T                         
Sbjct: 1619 VVCNKALALVTLHYKLDQFLLHPTLHKVAHENHQTLNKIKQMYNEYYDDISKMYTSEPII 1678

Query: 113  SIQADVVESLIAALYLDGGI--EVAGTFVDKY---WKQRALKSGKFRRDAKTELQEWAHA 167
             I  DV ES++ A+++D     ++    V K    + Q      +  ++ +  L  +   
Sbjct: 1679 KILGDVFESIVGAIFVDSSFNYDLTKQVVFKLLMPFMQHFTSPNQIIKNPQDRLFRYFKG 1738

Query: 168  KFGVTPEYKVTFR 180
            K     E  +T  
Sbjct: 1739 KNQAEFEIVMTDE 1751



 Score = 51.6 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 2/92 (2%)

Query: 10   EKRIGYAFANR--SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            ++   Y+  +    LL K       +   Q +Y+ LEFLGD  L LL S  +F  F  A 
Sbjct: 1292 QRNFKYSIHDIDNELLHKCFQSQQFNQDDQTNYQVLEFLGDANLKLLSSIEVFVQFPFAN 1351

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIRV 99
            E  L +    +VS E   + +      + I+ 
Sbjct: 1352 EHLLHLERARIVSNENLRKFSIIHRFFNCIKC 1383


>gi|158706443|sp|Q0CEI2|DCL2_ASPTN RecName: Full=Dicer-like protein 2; Includes: RecName:
            Full=Endoribonuclease dcl2; Includes: RecName:
            Full=ATP-dependent helicase dcl2
          Length = 1377

 Score = 98.2 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 58/278 (20%), Positives = 109/278 (39%), Gaps = 76/278 (27%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
            +L++ +GY F N +LL +ALTH S  S +  +SY+RLEFLGD +L +++   + +H    
Sbjct: 1092 SLKQHLGYTFVNEALLVEALTHPSCRSDASTQSYQRLEFLGDAVLDMVVVHAMAHHAVEC 1151

Query: 67   KEGELSVRFNSLVSAETCSQVARE---------------------------LDLASFIRV 99
             +GE+++  ++L +A   +    E                           ++L  F+R 
Sbjct: 1152 PQGEMTMIKHALTNANLLAFFCMEFVVAQEHTDVDAVPAAGGFALRSEQKPIELWRFMR- 1210

Query: 100  SSDLRKDVCSFMTSIQ----------------------------------ADVVESLIAA 125
                  D+ +   ++                                   +D+VES++ A
Sbjct: 1211 --SEALDLNNARETVLHRHSQLRAEIVHALHHGAQYPWQALSQLNADKFFSDIVESILGA 1268

Query: 126  LYLD--GGIEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
            +++D  G ++V   FV++     + +R L         +   Q  +  +   T + +V  
Sbjct: 1269 IFVDSRGDLDVCAMFVERIGLLPYLRRILADRVDVMHPRHTAQRLSKGEALFTAK-RVVD 1327

Query: 180  RSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAA 216
             SG      +  VV+ +         C S   AE  AA
Sbjct: 1328 GSGNA---SYRCVVKRNKEEIVVVEGCLSSEEAEVKAA 1362



 Score = 86.7 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 65/159 (40%), Gaps = 19/159 (11%)

Query: 7    STLEKRI--GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            + L + I     F++   +  A++  +        Y+R EF GD +L   +S  L+    
Sbjct: 917  TRLCETILQDVQFSSTRHVITAISAPTAQSPT--DYQRYEFFGDSVLKFTVSCQLYMQHP 974

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV--------------SSDLRKDVCS- 109
            +  EG LS   + +V     ++ A ++ L +FI                   +       
Sbjct: 975  NWPEGYLSEGRDEIVQNNRLARAALDVGLDAFILTRRFTPRKWTAPLISEKAVEVAGKRP 1034

Query: 110  FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL 148
              + + ADVVESLI A Y+DGG   A T + +   +  +
Sbjct: 1035 LSSKVLADVVESLIGAAYMDGGQAKAHTCIRRLLPEIEI 1073


>gi|225563402|gb|EEH11681.1| dicer-like protein [Ajellomyces capsulatus G186AR]
          Length = 1436

 Score = 98.2 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 46/264 (17%), Positives = 91/264 (34%), Gaps = 66/264 (25%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            +  +E  +GY F  +  L +A TH S   S   SY+RLEF+GD IL  +I   LFN   +
Sbjct: 1097 FQEVESLVGYVFNKKVFLVQAFTHPSNPGSKTSSYQRLEFVGDAILDHIIVYHLFNAPRT 1156

Query: 66   AKEGELSVRFNSLVSAETCSQVA--------------------------RELDLASFIRV 99
                ++ +   +L +A+  + +                            ++ L  ++R 
Sbjct: 1157 FPHFDMHLMRTALANADFLAFLCIGMSTERVRGEIAECSKENTSTTLTTHKVSLWQYMRH 1216

Query: 100  SSDLRKDVCSFMTSIQ--------------------------------ADVVESLIAALY 127
             +          T+ Q                                +D++ES++ A++
Sbjct: 1217 GTSWELTAAQQQTANQYETLQADISEALEGSHTYPWTLLSRLHAQKFFSDLIESVLGAIF 1276

Query: 128  LD--GGIEVAGTFVDK-----YWKQRALKSGKFRRDAKTEL-QEWAHAKFGVTPEYKVTF 179
            +D  G ++    F+++     + ++  +         K  L +E    K     E+ V  
Sbjct: 1277 IDSHGSLDACTAFLERIGLMKFLRRMLVDEDMDFMHPKQRLGEEVGTRKVRYEAEHVVDE 1336

Query: 180  RSGPDHDPRFTVVVEISGLAPAQG 203
              G      +T  V +      + 
Sbjct: 1337 EGGIGTLGYWTCKVFVGDECVVEA 1360



 Score = 79.7 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 44/149 (29%), Positives = 67/149 (44%), Gaps = 20/149 (13%)

Query: 15   YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
             AF + SL+  A++ +S++     +Y+R+EFLGD IL    +  L        EG LS  
Sbjct: 922  VAFTDLSLVITAIS-ASVAREAT-NYQRIEFLGDSILKFQTTLQLTAANPIWHEGLLSRA 979

Query: 75   FNSLVSAETCSQVARELDLASFIRV----------------SSDLRKDVCSF--MTSIQA 116
             +++VS +  S  A E  L  FI +                     +DV      T   A
Sbjct: 980  KDTVVSNKRLSYAAIETGLDKFILLDVFTGAKWRPPCNKDHLESEEQDVPQREMSTKTLA 1039

Query: 117  DVVESLIAALYLDGGIEVAGTFVDKYWKQ 145
            DVVE+L+AA  LDGG   A   ++ +  +
Sbjct: 1040 DVVEALLAAATLDGGQRKAEKCLEIFLPE 1068


>gi|321454554|gb|EFX65720.1| hypothetical protein DAPPUDRAFT_117031 [Daphnia pulex]
          Length = 322

 Score = 97.8 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 91/221 (41%), Gaps = 31/221 (14%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESY--ERLEFLGDRILGLLIS--- 56
           ++   + L ++IGY F N++LL +A+THS+ + +   S   E  E LGD  LG   +   
Sbjct: 66  TSFSLTALPEKIGYKFRNKNLLGRAMTHSTANQTKCPSQDGENFEVLGDVALGNFFAMAR 125

Query: 57  -------TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS 109
                   LL +   +  +G+LS+  +++   +T + +         I  S++  +    
Sbjct: 126 VNHTVVLELLLDLNPNYNQGQLSLLKSAITCNDTFADL--------VIIPSAEGYRANEI 177

Query: 110 FMTSIQADVVESLIAALYLDGGIE--VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHA 167
               I AD  E+LI AL +D   E  +    V         K  +        LQ     
Sbjct: 178 DYPEIYADAFEALIGALRIDCEREDRIIRRVVLNLMDDVIKKYTREV--PICPLQ----- 230

Query: 168 KFGVTPEYKVTFRSGPD-HDPRFTVVVEISGLAPAQGMDCS 207
           +   TP  KV FR  P+  D  F V++++       G   S
Sbjct: 231 RIRQTPL-KVNFRERPNLPDGSFHVLLDVQNKQYFHGSGPS 270


>gi|315049207|ref|XP_003173978.1| double-strand-specific pac1 ribonuclease [Arthroderma gypseum CBS
           118893]
 gi|311341945|gb|EFR01148.1| double-strand-specific pac1 ribonuclease [Arthroderma gypseum CBS
           118893]
          Length = 397

 Score = 97.8 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 98/229 (42%), Gaps = 27/229 (11%)

Query: 23  LEKA-LTHSSI-------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
           L+ A  TH+ I       + + +++Y+RLE LGD  + L+ + L++ +F +   G+++  
Sbjct: 138 LKTAVFTHTGIMERGPISTQTSEKTYDRLEVLGDAYIELISTRLIWENFPTLPAGKIAQA 197

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD---GG 131
             ++V  ET ++ A        ++ SSD+R  V    T +  DV E+ +AA  +    GG
Sbjct: 198 RETMVKNETLAEYAIAYGFDQRLKTSSDIR-SVPKRWTKVMGDVFEAYVAAAIIADPKGG 256

Query: 132 IEVAGTFVDKYWKQRA------LKSGKFRRDAKTELQEWAHAK---FGVTPEYKVTF-RS 181
           ++   +++ + W  +       L S    + +K  L++   A     G+  +Y     R 
Sbjct: 257 LQAVESWLTQLWLPKLAEVKVPLASVALAQGSKASLKDKLAATVMSRGIKLQYLDEKPRQ 316

Query: 182 GPDHDPRFTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLKREGI 225
                    + V ++G          G   SK  A   AA   L  + +
Sbjct: 317 REGGLVTSFIGVYLTGWGYEKKLLGSGSGLSKSEAGNEAALNALNNKPL 365


>gi|302412551|ref|XP_003004108.1| ribonuclease [Verticillium albo-atrum VaMs.102]
 gi|261356684|gb|EEY19112.1| ribonuclease [Verticillium albo-atrum VaMs.102]
          Length = 426

 Score = 97.5 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 58/241 (24%), Positives = 92/241 (38%), Gaps = 41/241 (17%)

Query: 19  NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           +  L     TH   +     +YERLE+LGD    ++ S+LLF  F     G+LS     L
Sbjct: 162 DPKLETAVFTH--YTVGPGLNYERLEWLGDAYAEIISSSLLFRTFGGFSSGKLSQLRELL 219

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL---DGGIEVA 135
           +      Q + +  L   +R + +  K        +  DV ES +AA+ L   + G++ A
Sbjct: 220 ICNANLGQYSAQYGLVDRVR-APEEVKASKEKWKKVPGDVFESYVAAVILSDPENGLQRA 278

Query: 136 GTFVDKYW----------------KQRALKSGKFR------RDAKTELQEWAHAKFGVTP 173
           G ++   +                 +  L+ G          +AK  L +   AK     
Sbjct: 279 GEWLKALFSMTIKHQISTISNKPEHRAVLEMGDQSLLPDKVLNAKVRLGQLIGAKGISL- 337

Query: 174 EYKVTFRSGPDHD---PRFTVV---VEISG-----LAPAQGMDCSKRAAEQVAAAEVLKR 222
            Y+    SGP  D    R TV    + + G         +G D +K+ A Q AA   L  
Sbjct: 338 RYE-DDISGPKFDKFNKRLTVHGVNLYLDGWGEKNKWLGKGTDINKKEAGQKAAQMALDN 396

Query: 223 E 223
           +
Sbjct: 397 K 397


>gi|154319367|ref|XP_001559001.1| hypothetical protein BC1G_02635 [Botryotinia fuckeliana B05.10]
 gi|150857066|gb|EDN32258.1| hypothetical protein BC1G_02635 [Botryotinia fuckeliana B05.10]
          Length = 425

 Score = 97.1 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 84/247 (34%), Gaps = 43/247 (17%)

Query: 19  NRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           + +L   + TH   ++       YERLE++GD  +  + + L+   F +   G+ S    
Sbjct: 148 DPTLELASFTHHGRTNGSVTDLSYERLEWVGDAYIYTISTLLISQTFPALLPGKCSQLRE 207

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCS-FMTSIQADVVESLIAALYL---DGGI 132
            LV   T +  AR+       ++  D    +          D+ E+ +AA+ L   + G+
Sbjct: 208 RLVKNVTLADFARKYGFEKRAKLPEDTIHPMKEPEKIKAMGDIFEAYVAAIVLADPENGV 267

Query: 133 EVAGTFVDKYW--------KQRALKSGKFR--------------------RDAKTELQEW 164
             A  ++   W        +Q      K                       + K +LQ  
Sbjct: 268 SRASEWLKSLWAMVLSKEIQQEERNEDKLDSPLWRLRGNVDHVQTKTKTVLNPKEKLQMA 327

Query: 165 AHAKFGVTPEYKVTFRSGPDHD---PRFTVVVEISG-----LAPAQGMDCSKRAAEQVAA 216
            ++K      YK    +  D +     FTV V + G          G    K+ A   AA
Sbjct: 328 LNSKVSKL-TYKDIGTAKKDKNTKLAVFTVGVFLDGWGEVDKQIGFGSANGKKEAGFKAA 386

Query: 217 AEVLKRE 223
              L  +
Sbjct: 387 EMALNNK 393


>gi|168046558|ref|XP_001775740.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672892|gb|EDQ59423.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 792

 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 80/225 (35%), Gaps = 35/225 (15%)

Query: 5   RYSTLEKRIGYAFANRSLLEKAL--------THSSISHSYQESYERLEFLGDRILGLLIS 56
              TLEK+IGY F  +SLL  A         T S +     + ++RLEFLGD +L  LI 
Sbjct: 539 DIVTLEKKIGYQFKCKSLLLSAFDYGDEVTFTQSGVPRGSFQ-FQRLEFLGDSVLDFLIM 597

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI-RVSSDLRKDV-------- 107
                 + +    +L+    + V++E  +  A       ++ R+S  LR ++        
Sbjct: 598 RHFVQLYSAFNPEQLNDLRQATVNSENFACTAIRHGFHHYLKRMSPILRDEIELYAASVH 657

Query: 108 ----------CSFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRD 156
                              D++++L  ++ LD   +    + V K             R 
Sbjct: 658 REGGSPFGIPSRASPKAIGDLMQTLAGSILLDSNFDHDLVWKVLKPLLSPLATPKTVMRH 717

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201
            +  L+   H +     E +     G          V I+ +  A
Sbjct: 718 PRRLLEALCHKQDLKL-ELQTIQLEGA-----VEARVYINQICVA 756



 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 54/166 (32%), Gaps = 26/166 (15%)

Query: 24  EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83
           ++ALT  S +     SYE LE LGD +L  +    ++  F S     L    + LVS   
Sbjct: 374 QEALT--SGACEGNHSYETLELLGDSVLNFIGGVHMYIDFPSCTSELLHSYRHDLVSNRN 431

Query: 84  CSQVARELDLASFIRV-----------SSDLRK------DVCSFMTSIQADVVESLIAAL 126
             +      L  +I                L        D         ADVVE+LI   
Sbjct: 432 LYKCGLACGLPGYIFAELLNTKTWVPPGPALEDLPQKSPDGQVIGLKTLADVVEALIGVT 491

Query: 127 YLDGGIEVAGT---FVDKYWKQRALKSGKFRRDAKTELQEWAHAKF 169
           +L G +  A     ++                D    +QE   A+ 
Sbjct: 492 FLHGDLNSAVKTMVWLQVPIPFPEKIPEVIIAD----IQELMEARN 533


>gi|307109321|gb|EFN57559.1| hypothetical protein CHLNCDRAFT_143199 [Chlorella variabilis]
          Length = 2232

 Score = 97.1 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 88/248 (35%), Gaps = 52/248 (20%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLI--------- 55
                +E  +G+ FA++ L+ +ALTH S   S    ++RLEFLGD +L  L+         
Sbjct: 1924 DVGAIEAVLGHTFASKWLVVEALTHCSWPGSGVRCFQRLEFLGDAVLDALMHDMRSVAVN 1983

Query: 56   -STLLFNHFDSAK--EGELSVRFNSLVSAETCSQVA-----------------------R 89
             S L +         E        +L + E  +  A                       R
Sbjct: 1984 ASRLAYAGKPGLDFVEEWRDRLREALEAQEQQACPASPAGGTAGAAAGDADAAASKEALR 2043

Query: 90   ELDLASFIRVSSDLR-----KDVCSFMT---------SIQADVVESLIAALYLDGGIEVA 135
              +L+   + +   +     K                ++ +DVVESLI A+++D G ++ 
Sbjct: 2044 AAELSVMTQFAFGFQTIQAPKASGRDQPPSPALHCLQTVLSDVVESLIGAVFVDTGGDMG 2103

Query: 136  GTF-VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
              + V +      +            LQE    + GV P+Y+   R       R  V V 
Sbjct: 2104 RVWEVTQRLLDPMVVPETLPVHPIRRLQELVQ-RCGVNPKYEEAGRE-QGGAGRVHVKVS 2161

Query: 195  ISGLAPAQ 202
              G+   +
Sbjct: 2162 AQGVVLGE 2169



 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 5/105 (4%)

Query: 42   RLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS 101
            RLE LGD  L   +S  LF+      EG+L+ R   +V+    ++ A +L L   +RV  
Sbjct: 1765 RLETLGDAFLKFAVSAQLFSAHRQYHEGQLTKRKELVVANIHLAEAAVKLGLDRRLRVLP 1824

Query: 102  DLRKD-----VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141
                +          + + AD +E+L+ A  + GG   A  F+  
Sbjct: 1825 FSMHNWASPEAVRKSSKVLADAMEALLGAFLVAGGYPAALAFLQA 1869


>gi|296817299|ref|XP_002848986.1| RNase3 domain-containing protein [Arthroderma otae CBS 113480]
 gi|238839439|gb|EEQ29101.1| RNase3 domain-containing protein [Arthroderma otae CBS 113480]
          Length = 378

 Score = 96.7 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/234 (21%), Positives = 91/234 (38%), Gaps = 34/234 (14%)

Query: 18  ANRSLLEKALTH-------SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
            +  L     TH          S   ++SY+RLE LGD  + L+ + L++ +F +   G+
Sbjct: 116 KDEGLKSAVFTHTGIVERGPGSSLCSEKSYDRLEVLGDAYIELISTRLIWENFPTLPAGK 175

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD- 129
           ++    ++V  ET +Q A        ++ +SD R  V    T I+ DV E+ +AA  +  
Sbjct: 176 MAQARETMVKNETLAQYATAYGFDELLKTTSDYR-SVPKRWTKIRGDVFEAYVAAAIISD 234

Query: 130 --GGIEVAGTFVDKYWKQRALK-------SGKFRRD---AKTELQEWAHAKFGVTPEYKV 177
              G+    +++ + W  +          +G    +    K +L     +K G+  +Y  
Sbjct: 235 PKDGLRAVESWLTQLWLPKLADVKLPLPPAGPEHGNKISFKDKLAATVMSK-GIRLQY-- 291

Query: 178 TFRSGPDHDP----RFTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLKR 222
                P  +      F + V ++G          G   SK  A   AA   L  
Sbjct: 292 IDEKPPQREGGLVTSF-IGVYLTGWGYERKHLGSGSGLSKTEAGNEAALRALNN 344


>gi|302664704|ref|XP_003023979.1| nucleolar RNAse III, putative [Trichophyton verrucosum HKI 0517]
 gi|291188003|gb|EFE43361.1| nucleolar RNAse III, putative [Trichophyton verrucosum HKI 0517]
          Length = 452

 Score = 96.7 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 97/232 (41%), Gaps = 26/232 (11%)

Query: 19  NRSLLEKALTHSSI-------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71
           + SL     TH+ I       + + +++Y+RLE LGD  + L+ + L++ +F +   G++
Sbjct: 188 DESLKTAVFTHTGIMERGPVSTQTSEKTYDRLEVLGDAYIELISTRLIWENFPTLPAGKI 247

Query: 72  SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-- 129
           +    ++V  ET ++ A        ++ SSD+ K+V    T +  DV E+ +AA  +   
Sbjct: 248 AQARETMVKNETLAEYAIAYGFDRLLKTSSDI-KNVPKRWTKVMGDVFEAYVAAAIIADP 306

Query: 130 -GGIEVAGTFVDKYWKQRA------LKSGKFRRDAKTELQEWAHAK---FGVTPEYKVTF 179
            GG++   +++ + W  +       L S    + +K   ++   A     G+  +Y    
Sbjct: 307 KGGLQAVESWLTQLWLPKLAEVKVPLASVTLAQGSKASFKDKLAATVMSRGIKLQYLEEK 366

Query: 180 -RSGPDHDPRFTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            R          +   ++G          G   SK  A   AA   L  + +
Sbjct: 367 PRQREGGLVTSFIGAYLTGWGYEKKLLGSGSGLSKSEAGNEAALNALNNKPL 418


>gi|284050833|ref|ZP_06381043.1| ribonuclease III [Arthrospira platensis str. Paraca]
          Length = 120

 Score = 96.7 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/105 (31%), Positives = 58/105 (55%), Gaps = 5/105 (4%)

Query: 5   RYSTLEKRIGYAFANR---SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +   L +R+G +  ++    LL+ ALTH S+S   Q++YE+LEF+GD ++ L  S LLF 
Sbjct: 15  QLEKLIERLGLSPQHKIAWQLLDLALTHPSVSS--QDNYEQLEFVGDSVVRLAASELLFE 72

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD 106
            + +A  GE +   + LVS    ++++    L  ++ V     +D
Sbjct: 73  TYPNAPVGEFAAVRSILVSDRILAEISESYGLGRYLLVGGSATRD 117


>gi|302506394|ref|XP_003015154.1| nucleolar RNAse III, putative [Arthroderma benhamiae CBS 112371]
 gi|291178725|gb|EFE34514.1| nucleolar RNAse III, putative [Arthroderma benhamiae CBS 112371]
          Length = 399

 Score = 96.7 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 96/232 (41%), Gaps = 26/232 (11%)

Query: 19  NRSLLEKALTHSSI-------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71
           + SL     TH+ I       + + +++Y+RLE LGD  + L+ + L++ +F +   G++
Sbjct: 135 DESLKTAVFTHTGIMERGPVSTQTSEKTYDRLEVLGDAYIELISTRLIWENFPTLPAGKI 194

Query: 72  SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-- 129
           +    ++V  ET ++ A        ++ SSD+ K V    T +  DV E+ +AA  +   
Sbjct: 195 AQARETMVKNETLAEYAIAYGFDRLLKTSSDI-KSVSKRWTKVMGDVFEAYVAAAIIADP 253

Query: 130 -GGIEVAGTFVDKYWKQRA------LKSGKFRRDAKTELQEWAHAK---FGVTPEYKVTF 179
            GG++   +++ + W  +       L S    + +K   ++   A     G+  +Y    
Sbjct: 254 KGGLQAVESWLTQLWLPKLAEVKVPLASVTLAQGSKASFKDKLAATVMSRGIKLQYLEEK 313

Query: 180 -RSGPDHDPRFTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            R          +   ++G          G   SK  A   AA   L  + +
Sbjct: 314 PRQREGGLVTSFIGAYLTGWGYEKKLLGSGSGLSKSEAGNEAALNALNNKPL 365


>gi|258614465|ref|ZP_05712235.1| ribonuclease III [Enterococcus faecium DO]
          Length = 97

 Score = 96.3 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 4/97 (4%)

Query: 1  MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE----SYERLEFLGDRILGLLIS 56
          M       L++     F + +LLE+A THSS  + ++       ERLEFLGD +L L++S
Sbjct: 1  MDNQLTKELKENYNIVFHDLNLLEQAFTHSSYVNEHRNLQLSDNERLEFLGDAVLELMVS 60

Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL 93
            LF  +    EG+L+   +   S     ++ + + L
Sbjct: 61 QYLFRLYPHLPEGKLTKNTSCDRSRRQLVEICQRMSL 97


>gi|327301473|ref|XP_003235429.1| RNase3 domain-containing protein [Trichophyton rubrum CBS 118892]
 gi|326462781|gb|EGD88234.1| RNase3 domain-containing protein [Trichophyton rubrum CBS 118892]
          Length = 399

 Score = 96.3 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 95/232 (40%), Gaps = 26/232 (11%)

Query: 19  NRSLLEKALTHSSI-------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71
           + SL     TH+ I       + + +++Y+RLE LGD  + L+ + L++ +F +   G++
Sbjct: 135 DESLKTAVFTHTGIMERGPISTQTSEKTYDRLEVLGDAYIELISTRLIWENFPTLPAGKI 194

Query: 72  SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-- 129
           +    ++V  ET ++ A        ++ SSD+ K V    T +  DV E+ +AA  +   
Sbjct: 195 AQARETMVKNETLAEYAVAYGFDQLLKTSSDI-KSVPKRWTKVMGDVFEAYVAAAIIADP 253

Query: 130 -GGIEVAGTFVDKYWKQRA------LKSGKFRRDAKTELQEWAHAK---FGVTPEYKVTF 179
            GG+    +++ + W  +       L S    + +K   ++   A     G+  +Y    
Sbjct: 254 KGGLRAVESWLTQLWLPKLAEVKVPLASVTLAQGSKASFKDKLAATVMSRGIKLQYLEEK 313

Query: 180 -RSGPDHDPRFTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            R          +   ++G          G   SK  A   AA   L  + +
Sbjct: 314 PRQREGGLVTSFIGAYLTGWGYEKKLLGSGSGLSKSEAGNEAALNALNNKPL 365


>gi|307110681|gb|EFN58917.1| hypothetical protein CHLNCDRAFT_140869 [Chlorella variabilis]
          Length = 171

 Score = 95.9 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/138 (26%), Positives = 58/138 (42%), Gaps = 11/138 (7%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           S      LE+R+ Y F N   L+ AL H S     + +  RL +LGD +LG  +S LL+ 
Sbjct: 16  SDAEVKALEQRLNYNFNNTWGLKLALVHPSYG---ELNNARLTWLGDAVLGAAVSDLLYQ 72

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD---- 117
               A    L     ++V  + C+  AR+L L   + V             ++ A     
Sbjct: 73  ALPDATIAGLHDHRMAIVRRKACAAAARKLGLDRLLVVGKGYE--GAEPTMAMLAGERCR 130

Query: 118 --VVESLIAALYLDGGIE 133
               E++  A+Y D G +
Sbjct: 131 RHCFEAVWGAIYEDAGFQ 148


>gi|164657402|ref|XP_001729827.1| hypothetical protein MGL_2813 [Malassezia globosa CBS 7966]
 gi|159103721|gb|EDP42613.1| hypothetical protein MGL_2813 [Malassezia globosa CBS 7966]
          Length = 388

 Score = 95.5 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 78/242 (32%), Gaps = 39/242 (16%)

Query: 21  SLLEKALTHSSISH----------------------SYQESYERLEFLGDRILGLLISTL 58
           +LL  A TH S+                           +   +L  +G+ +LGLL S  
Sbjct: 88  ALLRVACTHPSVLSVQQTASSLPMSLQERQQVRELQETIQHNAQLSTIGNSLLGLLTSEY 147

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELD-LASFI-RVSSDLRKDVCSFMTS--- 113
               +       L    ++     T + V  EL  LA  + R        +         
Sbjct: 148 FHLKYPHLPTRVLKAFVSAYAGPSTLADVGAELGVLAQGVQRWDRTGASSITRRTPRGGT 207

Query: 114 ---------IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQ 162
                    + A  V +++A L+ + G+     FV  +   R L        RD K  L 
Sbjct: 208 TSVPLLSKDVAAQSVRAIVAVLFQELGMPAVRGFVHSHLLSRRLDLASLLKFRDPKRVLS 267

Query: 163 EWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
                     P+ ++   +G     P F V V    +   +G   S R AE  AA + L+
Sbjct: 268 STCKKYGKPAPQSRMLAETGRLSIHPVFVVGVYSGAIQLGEGTGSSIRMAEFRAAEDALR 327

Query: 222 RE 223
           R 
Sbjct: 328 RL 329


>gi|126659516|ref|ZP_01730648.1| ribonuclease III (rnc) [Cyanothece sp. CCY0110]
 gi|126619155|gb|EAZ89892.1| ribonuclease III (rnc) [Cyanothece sp. CCY0110]
          Length = 328

 Score = 95.5 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 72/157 (45%), Gaps = 7/157 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSIS---HSYQESYERLEFLGDRILGLLISTLLFNHF 63
           S ++++I + F N  LL  +L+  S     +      ERLE LG+ +L L+I   L++HF
Sbjct: 6   SLVQEKISFNFKNPELLFLSLSDPSYGKQINQPGSDNERLESLGETVLDLIIIDYLYHHF 65

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLAS-FIRVSSDLRKDVCSFMTSI-QADVVES 121
                 +++   + L   E  + +   L L   +  +  +  +      +S      +++
Sbjct: 66  PYLTISKMTALRDKLSEKERLTNLWFGLGLGESYPFLDVNEERHRLRVKSSNPFEKSLKA 125

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK 158
           L+ A+++D G   +  +V+K      L+  + ++D K
Sbjct: 126 LVGAIHIDRGFSQSYNWVNKQLIAPLLE--RHQKDDK 160


>gi|225678617|gb|EEH16901.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
          Length = 314

 Score = 95.5 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 75/157 (47%), Gaps = 15/157 (9%)

Query: 19  NRSLLEKALTHSSISHSY---------QESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           ++SL     TH  ++            +++YERLE LGD  + +  + L+++ F   + G
Sbjct: 153 DKSLQTAIFTHEGVNDPTNTTTTTASTEKNYERLELLGDAYIEIFATRLVWDTFPRLRAG 212

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
            LS     LV  ET ++ A    L   ++V++++R+      T ++ D+ E+ +AA+ L 
Sbjct: 213 RLSQIREMLVKNETLAEYATRYGLDRRLQVAAEIRRQ-AKTWTKVRGDLFEAYVAAVILS 271

Query: 130 G---GIEVAGTFVDKYWKQRA--LKSGKFRRDAKTEL 161
               G+E+   ++ + W  R   ++  +     K EL
Sbjct: 272 HPKRGVEMVEEWLTQLWIPRLEGVERERPVLRYKEEL 308


>gi|159481710|ref|XP_001698921.1| dicer-like protein [Chlamydomonas reinhardtii]
 gi|158273413|gb|EDO99203.1| dicer-like protein [Chlamydomonas reinhardtii]
          Length = 5684

 Score = 95.1 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 35/97 (36%), Positives = 48/97 (49%), Gaps = 4/97 (4%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
             LE  +GY F N  L  +ALTH S   +      Y+RLEFLGD +LGL++S  +F+    
Sbjct: 3492 ELEALLGYRFRNPDLCVQALTHVSHPRAAGCGGGYQRLEFLGDAVLGLVVSFWVFSA--G 3549

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102
                 +S R   LVS    ++ A  L L   +R  S 
Sbjct: 3550 GSAEAMSTRRRDLVSNGPLAEAAARLGLQRHLRAGSG 3586



 Score = 36.2 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 34/100 (34%), Gaps = 9/100 (9%)

Query: 30   SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAR 89
             S       +Y+RLEFLGD  L      LL   +   +E  L    +      T  Q   
Sbjct: 3090 PSCRDPGVGNYDRLEFLGDAAL-----KLLAQVYVFLRESRLPPPPHKPNPPTTHPQTLA 3144

Query: 90   ELDLASFIRVSSDLRK----DVCSFMTSIQADVVESLIAA 125
               L   +R+++ LR        +   +      ++   A
Sbjct: 3145 HHALGPRLRLAACLRALPLDPGRALRQAALQPDEDAASGA 3184


>gi|326468912|gb|EGD92921.1| RNase3 domain-containing protein [Trichophyton tonsurans CBS
           112818]
 gi|326480108|gb|EGE04118.1| double-strand-specific pac1 ribonuclease [Trichophyton equinum CBS
           127.97]
          Length = 399

 Score = 94.8 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 95/232 (40%), Gaps = 26/232 (11%)

Query: 19  NRSLLEKALTHSSI-------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71
           + SL     TH+ I       + + +++Y+RLE LGD  + L+ + L++ +F +   G++
Sbjct: 135 DESLKTAVFTHTGIMERGPVSTQTSEKTYDRLEVLGDAYIELISTRLIWENFPTLPAGKI 194

Query: 72  SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-- 129
           +    ++V  ET ++ A        ++ SSD+ K V    T +  DV E+ +AA  +   
Sbjct: 195 AQARETMVKNETLAEYAIAYGFDQLLKTSSDI-KSVPKRWTKVMGDVFEAYVAAAIIADP 253

Query: 130 -GGIEVAGTFVDKYWKQRA------LKSGKFRRDAKTELQEWAHAK---FGVTPEYKVTF 179
            GG+    +++ + W  +       L S    + +K   ++   A     G+  +Y    
Sbjct: 254 KGGLRAVESWLSQLWLPKLAEVKVPLASVTLAQGSKASFKDKLAATVMSRGIKLQYLEEK 313

Query: 180 -RSGPDHDPRFTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            R          +   ++G          G   SK  A   AA   L  + +
Sbjct: 314 PRQREGGLVTSFIGAYLTGWGYEKKLLGSGSGLSKSEAGNEAALNALNNKPL 365


>gi|75858914|ref|XP_868797.1| hypothetical protein AN9415.2 [Aspergillus nidulans FGSC A4]
 gi|40747690|gb|EAA66846.1| hypothetical protein AN9415.2 [Aspergillus nidulans FGSC A4]
          Length = 1073

 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 64/128 (50%), Gaps = 4/128 (3%)

Query: 23  LEKA-LTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
           LE+A  TH  ++   + +Y+RLE LGD  + L+ + L++N F     G +S     LV  
Sbjct: 120 LERAVFTHPGVAKDSRTTYDRLEILGDAYIELISTKLIWNKFQHIPSGRISQIRELLVKN 179

Query: 82  ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG--GIEVAGTFV 139
           ET ++ A +  +     V ++L      ++   + D+ E+ +AA+ L    G  VA T++
Sbjct: 180 ETLAEYATQYGIDKKASVPAELYNQPKRWI-KTKGDIFEAYVAAVILSHPDGYSVAETWL 238

Query: 140 DKYWKQRA 147
            + W  + 
Sbjct: 239 SELWSPKL 246


>gi|134081603|emb|CAK46537.1| unnamed protein product [Aspergillus niger]
          Length = 1352

 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 68/164 (41%), Gaps = 22/164 (13%)

Query: 16   AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
             F++   +  A+T  S       +Y+R EF GD +L   +S  LF    +  EG LS   
Sbjct: 892  EFSSIRHIITAITAPSAQSLT--NYQRYEFFGDSVLKFTVSCQLFFQHPNWHEGYLSEGR 949

Query: 76   NSLVSAETCSQVARELDLASFI-------------RVSSDLRKDVCSF--MTSIQADVVE 120
            + +V     ++ A +  L +FI              +S  +          T + ADVVE
Sbjct: 950  DEIVQNSRLARAALDAGLDAFIMNKMFTPRKWSAPLISEKISLTPKQRTMSTKVLADVVE 1009

Query: 121  SLIAALYLDGGIEVAGTFVDKYWKQRALK-----SGKFRRDAKT 159
            +LI A Y+DGG   A   + ++  +  L+     +    +D  T
Sbjct: 1010 ALIGASYIDGGFAAAHACIHRFLPEVNLENIDRTTAPMPKDGVT 1053



 Score = 90.9 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 1/92 (1%)

Query: 3    ALRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFN 61
             L    L   IGY F N+SLL ++LTH S    +  +SY+RLEFLGD +L + I + L +
Sbjct: 1056 TLNDDHLMAHIGYTFTNKSLLVESLTHPSCQFDTTTQSYQRLEFLGDAVLDMAIMSTLLS 1115

Query: 62   HFDSAKEGELSVRFNSLVSAETCSQVARELDL 93
            H     +G ++   +++V+A   +    E  L
Sbjct: 1116 HPREIPQGLMTKIKHAVVNANLLAFFCMEFAL 1147


>gi|158706449|sp|A2R345|DCL21_ASPNC RecName: Full=Dicer-like protein 2-1; Includes: RecName:
            Full=Endoribonuclease dcl2-1; Includes: RecName:
            Full=ATP-dependent helicase dcl2-1
          Length = 1387

 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 68/164 (41%), Gaps = 22/164 (13%)

Query: 16   AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
             F++   +  A+T  S       +Y+R EF GD +L   +S  LF    +  EG LS   
Sbjct: 927  EFSSIRHIITAITAPSAQSLT--NYQRYEFFGDSVLKFTVSCQLFFQHPNWHEGYLSEGR 984

Query: 76   NSLVSAETCSQVARELDLASFI-------------RVSSDLRKDVCSF--MTSIQADVVE 120
            + +V     ++ A +  L +FI              +S  +          T + ADVVE
Sbjct: 985  DEIVQNSRLARAALDAGLDAFIMNKMFTPRKWSAPLISEKISLTPKQRTMSTKVLADVVE 1044

Query: 121  SLIAALYLDGGIEVAGTFVDKYWKQRALK-----SGKFRRDAKT 159
            +LI A Y+DGG   A   + ++  +  L+     +    +D  T
Sbjct: 1045 ALIGASYIDGGFAAAHACIHRFLPEVNLENIDRTTAPMPKDGVT 1088



 Score = 90.9 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 1/92 (1%)

Query: 3    ALRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFN 61
             L    L   IGY F N+SLL ++LTH S    +  +SY+RLEFLGD +L + I + L +
Sbjct: 1091 TLNDDHLMAHIGYTFTNKSLLVESLTHPSCQFDTTTQSYQRLEFLGDAVLDMAIMSTLLS 1150

Query: 62   HFDSAKEGELSVRFNSLVSAETCSQVARELDL 93
            H     +G ++   +++V+A   +    E  L
Sbjct: 1151 HPREIPQGLMTKIKHAVVNANLLAFFCMEFAL 1182


>gi|242809985|ref|XP_002485488.1| RNA helicase/RNAse III, putative [Talaromyces stipitatus ATCC 10500]
 gi|218716113|gb|EED15535.1| RNA helicase/RNAse III, putative [Talaromyces stipitatus ATCC 10500]
          Length = 1420

 Score = 94.0 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/274 (16%), Positives = 95/274 (34%), Gaps = 81/274 (29%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   +E+ +GY F   S+L +ALTH   ++    +Y+RLEFLGD +L   +    FNH +
Sbjct: 1123 KLGQMEEILGYKFNKPSILFEALTHP-CANDGAPTYQRLEFLGDSLLDHFVVQEFFNHPE 1181

Query: 65   SAKEGELSVRFNSLVSAETCSQVAR--------------------------ELDLASFIR 98
                 ++ +   ++V+A     + +                          ++ L   +R
Sbjct: 1182 KISHQDMHLMRTAVVNAHFLGFLCQSLYITEERSEPVSPGKAHISTISTEHKIYLWQLMR 1241

Query: 99   VSSDLRKDVCSFMTSIQ--------------------------------ADVVESLIAAL 126
              +          T  +                                +D+VESL+ A+
Sbjct: 1242 HGASWEITNAQQETKARYEAWGPAVHDALMHSNKYPWADLFRINASKFFSDMVESLLGAI 1301

Query: 127  YLD--GGIEVAGTFVDKY----WKQRALKSGKFRRDAKTELQE-----WAH------AKF 169
            ++D  G ++ +  F+++       +R ++          +L E               + 
Sbjct: 1302 FVDSKGSLDASRQFLERISLLPCLRRIIREEVLILHPFNQLHEAAISDKVQISHSVEKRL 1361

Query: 170  GVTPEYK-VTFRSGPDHDPRFTVVVEISGLAPAQ 202
              +P ++ V    G      F   V+++G    +
Sbjct: 1362 PTSPGFEDVVREDGL----VFICSVKVAGEEIVR 1391



 Score = 84.7 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 44/147 (29%), Positives = 65/147 (44%), Gaps = 17/147 (11%)

Query: 15   YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
              F N S +  A++ SS    +   Y+R EFLGD +L L+ S  L        EG LS  
Sbjct: 952  VKFENLSHVLTAISASSAQEEH--DYQRYEFLGDSLLKLITSIHLVVKKPLWHEGLLSAE 1009

Query: 75   FNSLVSAETCSQVARELDLASFIRVSS-DLRKDVCSF--------------MTSIQADVV 119
             +++VS     + A +L L  FI   S   RK   ++               T   ADVV
Sbjct: 1010 KDTIVSNGRLHRTALDLGLDKFILTKSFTGRKWRPNYISQFETVTEEKRQMSTKTLADVV 1069

Query: 120  ESLIAALYLDGGIEVAGTFVDKYWKQR 146
            E+L+ A +LDGG E   +    +  ++
Sbjct: 1070 EALLGAAFLDGGYEKLESCAKIFLPEQ 1096


>gi|317035030|ref|XP_001400925.2| ATP-dependent helicase dcl2 [Aspergillus niger CBS 513.88]
          Length = 1407

 Score = 94.0 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 68/164 (41%), Gaps = 22/164 (13%)

Query: 16   AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
             F++   +  A+T  S       +Y+R EF GD +L   +S  LF    +  EG LS   
Sbjct: 927  EFSSIRHIITAITAPSAQSLT--NYQRYEFFGDSVLKFTVSCQLFFQHPNWHEGYLSEGR 984

Query: 76   NSLVSAETCSQVARELDLASFI-------------RVSSDLRKDVCSF--MTSIQADVVE 120
            + +V     ++ A +  L +FI              +S  +          T + ADVVE
Sbjct: 985  DEIVQNSRLARAALDAGLDAFIMNKMFTPRKWSAPLISEKISLTPKQRTMSTKVLADVVE 1044

Query: 121  SLIAALYLDGGIEVAGTFVDKYWKQRALK-----SGKFRRDAKT 159
            +LI A Y+DGG   A   + ++  +  L+     +    +D  T
Sbjct: 1045 ALIGASYIDGGFAAAHACIHRFLPEVNLENIDRTTAPMPKDGVT 1088



 Score = 90.9 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 1/92 (1%)

Query: 3    ALRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFN 61
             L    L   IGY F N+SLL ++LTH S    +  +SY+RLEFLGD +L + I + L +
Sbjct: 1091 TLNDDHLMAHIGYTFTNKSLLVESLTHPSCQFDTTTQSYQRLEFLGDAVLDMAIMSTLLS 1150

Query: 62   HFDSAKEGELSVRFNSLVSAETCSQVARELDL 93
            H     +G ++   +++V+A   +    E  L
Sbjct: 1151 HPREIPQGLMTKIKHAVVNANLLAFFCMEFAL 1182


>gi|212537171|ref|XP_002148741.1| RNA helicase/RNAse III, putative [Penicillium marneffei ATCC 18224]
 gi|210068483|gb|EEA22574.1| RNA helicase/RNAse III, putative [Penicillium marneffei ATCC 18224]
          Length = 1431

 Score = 94.0 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 76/197 (38%), Gaps = 61/197 (30%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            +   +E+ +GY F   S+L +ALTH S S+    +Y+RLEFLGD +L   +    FNH +
Sbjct: 1127 KLGQMEEMLGYKFNKPSILFEALTHPS-SNDGAPTYQRLEFLGDSLLDHFVVQEFFNHPE 1185

Query: 65   SAKEGELSVRFNSLVSAETCSQVAR--------------------------ELDLASFIR 98
                 E+ +   ++V+A     + +                          +L L   +R
Sbjct: 1186 KLSHQEMHLMRTAVVNAHFLGFLCQSLYITEQRTEPVSPGKAHLSTISTDHKLYLWQLMR 1245

Query: 99   VSSDLRKDVCSFMTSIQ--------------------------------ADVVESLIAAL 126
              +          T  +                                +D+VES++ A+
Sbjct: 1246 HGASWEVMNAQQETKTRYEAWGSAVHDALNHSKTYPWAALFRINASKFFSDMVESILGAI 1305

Query: 127  YLD--GGIEVAGTFVDK 141
            ++D  G ++V+  F+++
Sbjct: 1306 FVDSRGSMDVSRQFLER 1322



 Score = 84.7 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 45/148 (30%), Positives = 62/148 (41%), Gaps = 21/148 (14%)

Query: 17   FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
            F+N + +  A++ SS     +  Y+R EFLGD +L L+ S  L  +     EG LS   +
Sbjct: 958  FSNLAHVLTAISASSA--HEENDYQRYEFLGDSLLKLITSIHLVVNNPLWHEGMLSAAKD 1015

Query: 77   SLVSAETCSQVARELDLASFIRVSS-----------------DLRKDVCSFMTSIQADVV 119
            ++VS     + A  L L  FI   S                    K      T   ADVV
Sbjct: 1016 TIVSNGRLYRTALNLGLDRFILTKSFTGRKWRPSYVSQFETVGEEKR--ELSTKTLADVV 1073

Query: 120  ESLIAALYLDGGIEVAGTFVDKYWKQRA 147
            ESL+ A +LDGG E           +RA
Sbjct: 1074 ESLLGAAFLDGGYEKLEACAKIVLPERA 1101


>gi|219852808|ref|YP_002467240.1| ribonuclease III [Methanosphaerula palustris E1-9c]
 gi|219547067|gb|ACL17517.1| ribonuclease III [Methanosphaerula palustris E1-9c]
          Length = 160

 Score = 93.6 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 67/151 (44%), Gaps = 7/151 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYER----LEFLGDRILGLLISTLLF 60
           +   LE+RI Y F +++  ++ALT  + +       +R    L  LGD ++ LL+   L 
Sbjct: 6   QIEELERRIKYRFIDQAHPQRALTRLAFAGEQHFEDDRDMDALATLGDAVIDLLVIDDLL 65

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
               + K GE++V     V+      +A  LDLA  +                + A+  E
Sbjct: 66  RTGVTRK-GEITVLKVRRVNMSVLRSIAESLDLAPLVFWGKGEETQQVWLSGRVLAECCE 124

Query: 121 SLIAALYLDGGIEVAGTFV--DKYWKQRALK 149
           ++I A++LDGG+      +   +   +R ++
Sbjct: 125 AVIGAVFLDGGLRAVRQVLVTLELISEREVE 155


>gi|302502160|ref|XP_003013071.1| RNA helicase/RNAse III, putative [Arthroderma benhamiae CBS 112371]
 gi|291176633|gb|EFE32431.1| RNA helicase/RNAse III, putative [Arthroderma benhamiae CBS 112371]
          Length = 1490

 Score = 93.6 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/283 (18%), Positives = 103/283 (36%), Gaps = 73/283 (25%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
             S +E  I Y+F  ++LL  +L+H S +     +Y+RLEFLGD IL  +++  LF     
Sbjct: 1208 LSKIEPLIDYSFTKKALLAASLSHPS-NPISGMTYQRLEFLGDSILDNIVTRALFRCKKE 1266

Query: 66   AKEGELSVRFNSLVSAETCSQVA--------------------------RELDLASFIRV 99
                ++ +   +LV+A+  + +                           R++ L  ++  
Sbjct: 1267 IPHQDMHLIRTALVNADFLAFLCMNTSTDETREDVCVSPTGEVEVTSSTRQVSLWQYMSH 1326

Query: 100  SS----------------------DLRKDVCSF---------MTSIQADVVESLIAALYL 128
            SS                      +  +    +              +D++ES++ A+++
Sbjct: 1327 SSTDIVETQQAMARTFEELRDQIENALRSGARYPWTLLSTLNAPKFFSDIIESILGAIFI 1386

Query: 129  D--GGIEVAGTFVDK-----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            D  G I     F+ +     Y ++     G      K  L   A +   ++ +Y V+   
Sbjct: 1387 DSRGSILACQKFLTRIGLMDYLQRVLEDDGIDFMHPKQRLGVVAQS---LSVQYVVSEVH 1443

Query: 182  GPDHDPRFTVVVEISGLAPAQ---GMDCSKRAAEQVAAAEVLK 221
                  ++   V +     ++   G+  S+  A   AA   L+
Sbjct: 1444 VKPGVTQWKCQVLVGDEEISRVDDGV--SQNQARAKAADLALE 1484



 Score = 86.7 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/149 (28%), Positives = 57/149 (38%), Gaps = 22/149 (14%)

Query: 17   FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
            F N  L+  A+T +S       +Y+RLEFLGD  L L  S  L        EG LS + +
Sbjct: 1033 FQNIQLVLTAITATSAREDT--NYQRLEFLGDSALKLHASMQLLAEHPLWHEGILSKKKD 1090

Query: 77   SLVSAETCSQVARELDLASFIRV--------------------SSDLRKDVCSFMTSIQA 116
            S+VS     + A +  L  FI                           K      T   A
Sbjct: 1091 SIVSNSRLWKAAVDTGLDQFILTTCFTGAKWRPLYNSTYTDNAGKIGEKSTRKLSTKTLA 1150

Query: 117  DVVESLIAALYLDGGIEVAGTFVDKYWKQ 145
            DVVESLI    +DGG       ++ +  +
Sbjct: 1151 DVVESLIGVAIIDGGENKVLRCLELFLPE 1179


>gi|328871085|gb|EGG19456.1| hypothetical protein DFA_00033 [Dictyostelium fasciculatum]
          Length = 1106

 Score = 93.2 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 62/154 (40%), Gaps = 23/154 (14%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSIS----------------HSYQESYERLEFLGDRIL 51
             +K    +  N  LL +  TH S                    +    +RLEFLGD +L
Sbjct: 689 EFQKSF-VSIKNDLLLRQVFTHPSTKMINSLVPQSYNIFRDYLPFDGDNQRLEFLGDSVL 747

Query: 52  GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111
               +  L+  +   +EG+L+ + + + S           ++   +R        V   M
Sbjct: 748 KFCTTYYLYFKYPQLREGQLTSKRSEITSNSYLLSKCERWNVVDLLRF------TVTEDM 801

Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145
              +ADV+E++  AL+++ G++ A  F+ +   Q
Sbjct: 802 KKPKADVMEAIFGALFIERGVKEAYQFIVQNIFQ 835



 Score = 92.4 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 10/131 (7%)

Query: 13  IGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           +        L ++++T         +SYERLEFLGD  L L+IS  L++ F   +EG LS
Sbjct: 866 LRINIKKTCLFQQSMT----CSGDLDSYERLEFLGDAFLDLVISKHLYDQFPDKQEGFLS 921

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                LV  E  +Q++++++L      S  +      F      D++E+ I  L LD G+
Sbjct: 922 TARAGLVKNEALAQISQKINL------SLAISDPHIHFTVKRLGDLLEAFIGCLLLDCGM 975

Query: 133 EVAGTFVDKYW 143
           E    F+   +
Sbjct: 976 EKTKYFIHTQF 986



 Score = 60.9 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 4/72 (5%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRS-GPDHDPRFT--VVVEISGLAP-AQGMDCSKRAA 211
           + K  LQE         P Y    ++ GP++   FT  V     G     +G   +K+ A
Sbjct: 4   NYKGLLQEICQKHREGVPNYTECHQAPGPNNSNIFTSQVHCLFRGTDLSGEGKGKTKKDA 63

Query: 212 EQVAAAEVLKRE 223
           E+ +A  V+ + 
Sbjct: 64  EKASALSVIHQL 75


>gi|302661784|ref|XP_003022555.1| RNA helicase/RNAse III, putative [Trichophyton verrucosum HKI 0517]
 gi|291186507|gb|EFE41937.1| RNA helicase/RNAse III, putative [Trichophyton verrucosum HKI 0517]
          Length = 1468

 Score = 92.8 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 51/283 (18%), Positives = 103/283 (36%), Gaps = 73/283 (25%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
             S +E  I Y+F  ++LL  +L+H S +     +Y+RLEFLGD IL  +++  LF     
Sbjct: 1186 LSKIEPLIDYSFTKKALLAASLSHPS-NPISGMTYQRLEFLGDSILDNIVTRALFRCKRE 1244

Query: 66   AKEGELSVRFNSLVSAETCSQVA--------------------------RELDLASFIRV 99
                ++ +   +LV+A+  + +                           R++ L  ++  
Sbjct: 1245 IPHQDMHLIRTALVNADFLAFLCMNTSTDETREDVCVSPTGEVEVTSSTRQVSLWQYMSH 1304

Query: 100  SS----------------------DLRKDVCSF---------MTSIQADVVESLIAALYL 128
            SS                      +  +    +              +D++ES++ A+++
Sbjct: 1305 SSTDIVETQQAMARTFEELRDQIENALRSGARYPWTLLSTLNAPKFFSDIIESILGAIFI 1364

Query: 129  D--GGIEVAGTFVDK-----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            D  G I     F+ +     Y ++     G      K  L   A +   ++ +Y V+   
Sbjct: 1365 DSRGSILACQKFLTRIGLMDYLQRVLEDDGIDFMHPKQRLGVVAQS---LSVQYVVSEVH 1421

Query: 182  GPDHDPRFTVVVEISGLAPAQ---GMDCSKRAAEQVAAAEVLK 221
                  ++   V +     ++   G+  S+  A   AA   L+
Sbjct: 1422 VKPGVTQWKCQVLVGDEEISRVDDGV--SQNQARAKAADLALE 1462



 Score = 86.3 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/149 (28%), Positives = 57/149 (38%), Gaps = 22/149 (14%)

Query: 17   FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
            F N  L+  A+T +S       +Y+RLEFLGD  L L  S  L        EG LS + +
Sbjct: 1011 FQNIQLVLTAITATSAREDT--NYQRLEFLGDSALKLHASMQLLAEHPLWHEGILSKKKD 1068

Query: 77   SLVSAETCSQVARELDLASFIRV--------------------SSDLRKDVCSFMTSIQA 116
            S+VS     + A +  L  FI                           K      T   A
Sbjct: 1069 SIVSNSRLWKAAVDTGLDQFILTTCFTGAKWRPLYNSTYTNNAGKIGEKSTRKLSTKTLA 1128

Query: 117  DVVESLIAALYLDGGIEVAGTFVDKYWKQ 145
            DVVESLI    +DGG       ++ +  +
Sbjct: 1129 DVVESLIGVAIIDGGENKVLRCLELFLPE 1157


>gi|169612533|ref|XP_001799684.1| hypothetical protein SNOG_09389 [Phaeosphaeria nodorum SN15]
 gi|111062461|gb|EAT83581.1| hypothetical protein SNOG_09389 [Phaeosphaeria nodorum SN15]
          Length = 474

 Score = 92.8 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 88/229 (38%), Gaps = 38/229 (16%)

Query: 23  LEKA-LTHSSISHSYQE---------SYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           L++A  TH SI  +             YERLE+LGD  + L+ S  L+N F      +L 
Sbjct: 162 LQEAVFTHRSIHANNVNVHQHVDFGLDYERLEYLGDAYIELIASRALYNRFPHVDVPQLC 221

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL---D 129
                LV     ++ +        ++   +  K+  ++   + AD+ E+ +A + L   +
Sbjct: 222 SWRERLVENVALAKFSEAYGFPDQLKRKVEFDKNSKAWR-KVVADIFEAYVAGVVLSDPE 280

Query: 130 GGIEVAGTFVDKYW-------KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK----VT 178
            G   A  ++D+ W       +++ +++ + R D    LQ+           YK    + 
Sbjct: 281 NGFATAEKWLDELWASQLLNFQEKVVENARARDD----LQKLLVVNGIQL-NYKEEKPMI 335

Query: 179 FRSGPDHDPRFTVVVEI-----SGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              G     ++ + V +            G    K  A   AA + +KR
Sbjct: 336 MEQG---VQKYYLGVYLTGWGYEDEWLGSGDGQKKAQACISAATDAIKR 381


>gi|158706444|sp|Q1DW80|DCL2_COCIM RecName: Full=Dicer-like protein 2; Includes: RecName:
            Full=Endoribonuclease DCL2; Includes: RecName:
            Full=ATP-dependent helicase DCL2
          Length = 1478

 Score = 92.4 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 48/261 (18%), Positives = 90/261 (34%), Gaps = 69/261 (26%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
             S +E  +GY F  + LL  A+TH S S     SY+RLEF+GD IL +++   LF     
Sbjct: 1184 LSEIEGLVGYTFKKKPLLLAAVTHPS-SKGSGHSYQRLEFVGDSILDIIVVQELFESPRC 1242

Query: 66   AKEGELSVRFNSLVSAETCSQVA--------------------------RELDLASFIRV 99
                ++ +   +LV+A+  + +                           R   L  F++ 
Sbjct: 1243 FHHFDMHLMRTALVNADFLAFLCMNAYREEDRGEAVENSKRRVTVAMTKRRAYLWGFMKH 1302

Query: 100  SSD------------------LRKDVCSFMTSIQ--------------ADVVESLIAALY 127
            S+                      D     +                 +D+VES++ A++
Sbjct: 1303 SASWDIVNAQQRAAKQYEKLHEEIDEKLRSSKTYPWTLLCRLDAAKFFSDIVESILGAIF 1362

Query: 128  LD--GGIEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            +D  G +     F+++     + +R L         K  L   A     ++ +Y+     
Sbjct: 1363 IDSQGSMPACRIFLERIGLIPYLKRVLSEDLDLMHPKERLGLLA---GTLSVKYETKRTQ 1419

Query: 182  GPDHDPRFTVVVEISGLAPAQ 202
            G +   R+     +      +
Sbjct: 1420 GVE-PQRWECAARVGDEEVVR 1439



 Score = 86.3 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 20/147 (13%)

Query: 17   FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
            F+N SL+  A+  SS +     +Y+RLEFLGD +L L  S  L        EG L++R  
Sbjct: 1012 FSNLSLVLTAI--SSSAAREASNYQRLEFLGDSLLKLHTSIQLAADHPLWPEGRLTMRKG 1069

Query: 77   SLVSAETCSQVARELDLASFIR-----------------VSSDLRKDVCSFM-TSIQADV 118
            ++VS    +  A +  L  FI                  +++    +    M T + ADV
Sbjct: 1070 NIVSNGYLANAALQTGLDKFILTKPFTGAKWRPSYNTDHINTGDMTEPTREMSTKVLADV 1129

Query: 119  VESLIAALYLDGGIEVAGTFVDKYWKQ 145
            VE+LI A  +DGG       +  +   
Sbjct: 1130 VEALIGAANIDGGENKILNCLKIFIPD 1156


>gi|119190771|ref|XP_001245992.1| hypothetical protein CIMG_05433 [Coccidioides immitis RS]
          Length = 1435

 Score = 92.4 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 48/261 (18%), Positives = 90/261 (34%), Gaps = 69/261 (26%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
             S +E  +GY F  + LL  A+TH S S     SY+RLEF+GD IL +++   LF     
Sbjct: 1141 LSEIEGLVGYTFKKKPLLLAAVTHPS-SKGSGHSYQRLEFVGDSILDIIVVQELFESPRC 1199

Query: 66   AKEGELSVRFNSLVSAETCSQVA--------------------------RELDLASFIRV 99
                ++ +   +LV+A+  + +                           R   L  F++ 
Sbjct: 1200 FHHFDMHLMRTALVNADFLAFLCMNAYREEDRGEAVENSKRRVTVAMTKRRAYLWGFMKH 1259

Query: 100  SSD------------------LRKDVCSFMTSIQ--------------ADVVESLIAALY 127
            S+                      D     +                 +D+VES++ A++
Sbjct: 1260 SASWDIVNAQQRAAKQYEKLHEEIDEKLRSSKTYPWTLLCRLDAAKFFSDIVESILGAIF 1319

Query: 128  LD--GGIEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            +D  G +     F+++     + +R L         K  L   A     ++ +Y+     
Sbjct: 1320 IDSQGSMPACRIFLERIGLIPYLKRVLSEDLDLMHPKERLGLLA---GTLSVKYETKRTQ 1376

Query: 182  GPDHDPRFTVVVEISGLAPAQ 202
            G +   R+     +      +
Sbjct: 1377 GVE-PQRWECAARVGDEEVVR 1396



 Score = 86.3 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 20/147 (13%)

Query: 17   FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
            F+N SL+  A+  SS +     +Y+RLEFLGD +L L  S  L        EG L++R  
Sbjct: 969  FSNLSLVLTAI--SSSAAREASNYQRLEFLGDSLLKLHTSIQLAADHPLWPEGRLTMRKG 1026

Query: 77   SLVSAETCSQVARELDLASFIR-----------------VSSDLRKDVCSFM-TSIQADV 118
            ++VS    +  A +  L  FI                  +++    +    M T + ADV
Sbjct: 1027 NIVSNGYLANAALQTGLDKFILTKPFTGAKWRPSYNTDHINTGDMTEPTREMSTKVLADV 1086

Query: 119  VESLIAALYLDGGIEVAGTFVDKYWKQ 145
            VE+LI A  +DGG       +  +   
Sbjct: 1087 VEALIGAANIDGGENKILNCLKIFIPD 1113


>gi|320035561|gb|EFW17502.1| RNA helicase/RNAse III [Coccidioides posadasii str. Silveira]
          Length = 1448

 Score = 92.4 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 48/261 (18%), Positives = 90/261 (34%), Gaps = 69/261 (26%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
             S +E  +GY F  + LL  A+TH S S     SY+RLEF+GD IL +++   LF     
Sbjct: 1141 LSEIEGLVGYTFKKKPLLLAAVTHPS-SKGSGHSYQRLEFVGDSILDIIVVQELFESPRG 1199

Query: 66   AKEGELSVRFNSLVSAETCSQVA--------------------------RELDLASFIRV 99
                ++ +   +LV+A+  + +                           R   L  F++ 
Sbjct: 1200 FHHFDMHLMRTALVNADFLAFLCMNAYREEDRGEAVENSKTRVTVAMTKRRAYLWGFMKH 1259

Query: 100  SSD------------------LRKDVCSFMTSIQ--------------ADVVESLIAALY 127
            S+                      D     +                 +D+VES++ A++
Sbjct: 1260 SASWDIVNAQQRAAKQYEKLHEEIDEKLRSSKTYPWTLLCRLDAAKFFSDIVESILGAIF 1319

Query: 128  LD--GGIEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            +D  G +     F+++     + +R L         K  L   A     ++ +Y+     
Sbjct: 1320 IDSQGSMPACRIFLERIGLIPYLKRVLSEDLDLMHPKERLGLLA---GTLSVKYETKRTQ 1376

Query: 182  GPDHDPRFTVVVEISGLAPAQ 202
            G +   R+     +      +
Sbjct: 1377 GVE-PQRWECAARVGDEEVVR 1396



 Score = 85.5 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 20/147 (13%)

Query: 17   FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
            F+N SL+  A+  SS +     +Y+RLEFLGD +L L  S  L        EG L++R  
Sbjct: 969  FSNLSLVLTAI--SSSAAREASNYQRLEFLGDSLLKLHTSIQLAADHPLWPEGRLTMRKG 1026

Query: 77   SLVSAETCSQVARELDLASFIR-----------------VSSDLRKDVCSFM-TSIQADV 118
            ++VS    +  A +  L  FI                  +++    +    M T + ADV
Sbjct: 1027 NVVSNGYLANAALQTGLDKFILTKPFTGAKWRPSYNTDHINTGNMTEPTREMSTKVLADV 1086

Query: 119  VESLIAALYLDGGIEVAGTFVDKYWKQ 145
            VE+LI A  +DGG       +  +   
Sbjct: 1087 VEALIGAANIDGGENKILNCLKIFIPD 1113


>gi|51870138|ref|YP_073691.1| hypothetical protein LDVICp186 [Lymphocystis disease virus -
           isolate China]
 gi|51858346|gb|AAU11030.1| hypothetical protein [Lymphocystis disease virus - isolate China]
          Length = 251

 Score = 92.4 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 80/215 (37%), Gaps = 31/215 (14%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE----LSVRFNSL 78
           L +A T  S+  S   +YE LE LGD +    +    +  F   +  +    ++    + 
Sbjct: 31  LTQAFTPPSVDPSI--NYESLEILGDGVAAYFLPMYFYKSFPQLQNPKGVKAIARLKINY 88

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD--------- 129
            S  + S +A+ L    +I+   +L+ +       +  DV E+ + ++ L          
Sbjct: 89  ASRRSFSSIAKFLGFWPYIKKPKNLKIN----QKKLLEDVFEAFLGSVCLILDNHFNVEG 144

Query: 130 GGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKF--GVTPEYKVTFRSGPDHD 186
            G  V   F+   +    ++   K   D KT L+E           P+Y     SG   +
Sbjct: 145 IGTAVCYNFLKSVFDGMTIEINYKALFDPKTRLKELTDKHKTELGLPDYT---HSG---N 198

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
                   + G   A     +++  EQ  + ++L+
Sbjct: 199 KT---ECYVGGELLAVVYGSNQKDREQEGSEKILE 230


>gi|195996287|ref|XP_002108012.1| hypothetical protein TRIADDRAFT_52058 [Trichoplax adhaerens]
 gi|190588788|gb|EDV28810.1| hypothetical protein TRIADDRAFT_52058 [Trichoplax adhaerens]
          Length = 915

 Score = 92.1 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 60/267 (22%), Positives = 94/267 (35%), Gaps = 66/267 (24%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S + +   Y F N   L  A THSS++    E+Y+RLE+LGD IL  L+   ++      
Sbjct: 652 SCILRNTDYQFNNFYWLRIAFTHSSVA---SENYQRLEYLGDAILEYLLIEFVYCRKPYF 708

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSS----DLRKDVCSFM----------- 111
             G++S   + +   +T S +A      + IR  S    D+   + +F            
Sbjct: 709 GPGKISHFKSVMTRNQTFSLIAIAFQFYTHIRCHSKLKLDIMDSIQNFKEILLDNHQDDH 768

Query: 112 -----------------------TSIQADVVESLIAALYLDGG------IEVAGTFVDKY 142
                                    + ADV E+ IAA+YLD G       +V    V + 
Sbjct: 769 QPDIGHFANLAYQLYTSNRYQKLPKVCADVFEAFIAAIYLDCGKKLRTVWKVVYKMVQRI 828

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD--HDPRFTVVVEIS---- 196
                   G       T      H  F     Y+V  RS     H   F     +     
Sbjct: 829 LADILNDVGGLTS---T-----IHDMFPNRIRYQVIKRSNSSKKHRRMF-----LDHPKL 875

Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           G+  ++G+  S  +A+  A   +L   
Sbjct: 876 GMLTSEGIGTSNTSAKDDAIRNMLSHL 902



 Score = 62.8 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 63/173 (36%), Gaps = 39/173 (22%)

Query: 21  SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
           S+L +ALT  S+S     ++ERLE LGD  L  + +   F    + KEG +S+     VS
Sbjct: 469 SMLLQALT--SLSADDFFNHERLEILGDSYLKFITTADYFFRNPNMKEGAMSLMRAINVS 526

Query: 81  AETCSQVARELDLASFI-----------------------RVSSDLRKDVCSFMTS---- 113
               S+ ++   L  +                         V++++  D      S    
Sbjct: 527 NSHLSRTSKLKGLTLYQFNTPFKLKQWLPPGFTCIRNNANLVANNMLTDGSKQRDSESFK 586

Query: 114 ------IQADVVESLIAALYLDGG-IEVAGTFVDKYWKQRALKSGKFRRDAKT 159
                   +D VE L+    L  G ++ A   +  +       +    +D K+
Sbjct: 587 QVMSVKNISDTVEGLVGVYSLASGPVDAAR--LLPWIGLDIDPNVLIEKD-KS 636


>gi|331236920|ref|XP_003331118.1| helicase [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
 gi|309310108|gb|EFP86699.1| helicase [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
          Length = 1410

 Score = 92.1 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 60/261 (22%), Positives = 93/261 (35%), Gaps = 68/261 (26%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
            L+   LE++IGY F  + LLE                   E+LGD ++ + I    +  F
Sbjct: 1110 LKCQALEEKIGYVFKEK-LLE-------------------EWLGDAVVDMWIVQHAYKRF 1149

Query: 64   DSAKEGELSVRFNSLVSAETCSQVA-RELDLASFIRVSSD-------------------- 102
            D+A   EL++    LVS  +   +A ++L L   I   S+                    
Sbjct: 1150 DNATAEELTLARAKLVSNGSLGFLAIKKLGLHKMIMHKSESFEQACVEAIKAIEPFTSIE 1209

Query: 103  ------LRKDVCSFMTSIQADVVESLIAALYLDGGIE--VAGTFVDKYWKQ------RAL 148
                      V      I  DV+E+++ A+++D   +       +DK ++       R +
Sbjct: 1210 EFFSNLENLFVVFDPPKILNDVLEAIVGAVFIDSRFDLPTVYRTIDKIFEDVTPGLSRIV 1269

Query: 149  KSGKFRRDAKTEL----QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV---EISGLAPA 201
                      T L    Q        V+   K     G D DP  +V V   E+ G   A
Sbjct: 1270 ARDPLS----TMLRLRDQYQCAELRRVSTTIKEPNPEGEDKDPI-SVKVCRIELHGQEIA 1324

Query: 202  QGM-DCSKRAAEQVAAAEVLK 221
             G    S   AEQ A+   LK
Sbjct: 1325 SGRHASSASVAEQRASLAALK 1345



 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 31/155 (20%)

Query: 2    SALRYSTLEKRIGYAFANRSLL---EKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58
             +++ + L  R+ +     +LL    +ALT   +       Y+ LE +GD  L L  S  
Sbjct: 922  DSIQATALFMRLDFP---MTLLPRGIQALTPPGVG--VPWDYQTLETVGDAFLKLATSVH 976

Query: 59   LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT------ 112
            ++       EG++S   +  V  +   + A + +L S I      R     F        
Sbjct: 977  VYLSHLRKGEGDMSHVRSKSVDNDYLRRKAIQANLPSSIL---GQRFRTDRFRDAQTEDG 1033

Query: 113  --------------SIQADVVESLIAALYLDGGIE 133
                           + +DVVE+L+ A +L GGIE
Sbjct: 1034 KELPNGNFSRNVPRRVLSDVVEALLGAGFLTGGIE 1068


>gi|302412697|ref|XP_003004181.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
 gi|261356757|gb|EEY19185.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
          Length = 1240

 Score = 92.1 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 55/295 (18%), Positives = 96/295 (32%), Gaps = 92/295 (31%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNHFD-SA 66
            LE+ I Y F  + LL +++TH+S +  +     ERLEFLGD IL  ++ + L   F  + 
Sbjct: 937  LEELIDYTFTKKILLIESITHASFTAGHVNGCLERLEFLGDAILDDIVVSHL---FPLNL 993

Query: 67   KEGELSVRFNSLVSAETCSQVA-------------------------------------- 88
                + +   + V+ +    +A                                      
Sbjct: 994  SHDRMHLLKTASVNGDLLGFLALESHAEEDEVIIDVNFSPSDTDLNPQNPAGMEQKLKRT 1053

Query: 89   -RELDLASFIRVSSDL-----RKDVCSFMT--------------------------SIQA 116
             R++ L  F+R SS        K   +                                +
Sbjct: 1054 RRKIPLWKFMRHSSIEVVQQQTKAAGAHADLRGQIIHALGHGSSYPWSLLARLHPAKFLS 1113

Query: 117  DVVESLIAALYLDGG-IEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGV 171
            D+VE+++ A+++D G +       ++        R  K        K+EL E A  +   
Sbjct: 1114 DMVEAVLGAVWVDSGDMRACVRVTERLGILPVLSRLAKDDVHVLHPKSELGEIASHR--- 1170

Query: 172  TPEYKVTFRSGPDH----DPRFTVVVEISGLAPAQ---GMDCSKRAAEQVAAAEV 219
            T +Y +T             ++   V I     A+   G+      AE  AA   
Sbjct: 1171 TVKYLLTLPEDAAGLQSAKRKYACKVMIGDRCVAEVDDGVARD--EAETKAAEIA 1223



 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/157 (25%), Positives = 62/157 (39%), Gaps = 35/157 (22%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S+L + +   F++ SL+  A+  S+       +YERLEFLGD IL L  +          
Sbjct: 768 SSLLRDLN--FSDPSLVLTAI--STKGSLEATNYERLEFLGDSILKLCTTVNAAALH--- 820

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIR-----------------VSSDLRKDVCS 109
                      LVS     + A +  L  F+                  + +  R     
Sbjct: 821 ----------GLVSNSRLCRAALDAGLDKFVLTENFTCRTWRPIYVNGMLETGARDSGPR 870

Query: 110 F-MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145
              T   ADVVE+LI A Y+DGG+  A   +  + ++
Sbjct: 871 EISTKTLADVVEALIGAAYIDGGLAKAIGCISIFLRE 907


>gi|331250704|ref|XP_003337958.1| helicase [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
 gi|309316948|gb|EFP93539.1| helicase [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
          Length = 1411

 Score = 91.7 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 60/261 (22%), Positives = 93/261 (35%), Gaps = 68/261 (26%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
            L+   LE++IGY F  + LLE                   E+LGD ++ + I    +  F
Sbjct: 1089 LKCQALEEKIGYVFKEK-LLE-------------------EWLGDAVVDMWIVQHAYKRF 1128

Query: 64   DSAKEGELSVRFNSLVSAETCSQVA-RELDLASFIRVSSD-------------------- 102
            D+A   EL++    LVS  +   +A ++L L   I   S+                    
Sbjct: 1129 DNATAEELTLARAKLVSNGSLGFLAIKKLGLHKVIMHKSESFEQACVEAIKAIEPFTSIE 1188

Query: 103  ------LRKDVCSFMTSIQADVVESLIAALYLDGGIE--VAGTFVDKYWKQ------RAL 148
                      V      I  DV+E+++ A+++D   +       +DK ++       R +
Sbjct: 1189 EFFSNLENLFVVFDPPKILNDVLEAIVGAVFIDSRFDLPTVYRTIDKIFEDVTPGLSRIV 1248

Query: 149  KSGKFRRDAKTEL----QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV---EISGLAPA 201
                      T L    Q        V+   K     G D DP  +V V   E+ G   A
Sbjct: 1249 ARDPLS----TMLRLRDQYQCAELRRVSTTIKEPNPEGEDKDPI-SVRVCRIELHGQEIA 1303

Query: 202  QGM-DCSKRAAEQVAAAEVLK 221
             G    S   AEQ A+   LK
Sbjct: 1304 SGRHASSASVAEQRASLAALK 1324



 Score = 54.7 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 31/155 (20%)

Query: 2    SALRYSTLEKRIGYAFANRSLL---EKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58
             +++ + L  R+ +     +LL    +ALT   +       Y+ LE +GD  L L  S  
Sbjct: 901  DSIQATALFMRLDFP---MTLLPRGIQALTPPGVG--VPWDYQTLETVGDAFLKLATSVH 955

Query: 59   LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT------ 112
            ++       EG++S   +  V  +   + A + +L S I      R     F        
Sbjct: 956  VYLSHLRKGEGDMSHVRSKSVDNDYLRRKAIQANLPSSIL---GQRFRTDRFRDAQTEDG 1012

Query: 113  --------------SIQADVVESLIAALYLDGGIE 133
                           + +DVVE+L+ A +L GGIE
Sbjct: 1013 KELPNGNFSRNVPRRVLSDVVEALLGAGFLTGGIE 1047


>gi|325185579|emb|CCA20062.1| Dicerlike 1 (DCL1) putative [Albugo laibachii Nc14]
          Length = 1609

 Score = 91.7 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 47/192 (24%), Positives = 76/192 (39%), Gaps = 52/192 (27%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISH-----------SYQESYERLEFLGDRILGLLIST 57
            LE+R+ Y F N+ LL +A+TH S+             S+Q +YERLE+LGD ++  L  +
Sbjct: 1383 LEQRLCYRFRNKLLLLEAITHPSVRRLEIVMDNEKRVSWQGNYERLEYLGDALIEYLTVS 1442

Query: 58   LLFNHFDSAKEGELSVRFNSLVSAETCSQVARE-LDLASFIRVSS--------------- 101
              F   D+   G LS    + VS +   + A     +   I +                 
Sbjct: 1443 YAFLAHDTWLPGSLSNWKAATVSNDALGKTAIACFGVDEAICLGHVQFDREIMNKIKTIP 1502

Query: 102  -------------------DLRKDVCSFM----TSIQADVVESLIAALYLDGGIEVAGTF 138
                                  K  C+        I ADV+E+L+AA++LD G ++    
Sbjct: 1503 RKYAVDYNVDTIQPGHSRNSTTKSNCTTNLLALPKILADVMEALVAAVFLDSGKDL--GI 1560

Query: 139  VDKYWKQRALKS 150
            +   +  R L +
Sbjct: 1561 IRDVFLGRLLDT 1572



 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 63/154 (40%), Gaps = 25/154 (16%)

Query: 3    ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
              + STL + IG    + +LL  A        + + +YER E LGD  L L  S  ++  
Sbjct: 1185 KAQVSTLMRHIGLEL-DMNLLGNA--------TSKPAYERCEVLGDTFLKLETSWYMYQM 1235

Query: 63   FDSAK-EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD---------VCSFMT 112
                  EG LS+    ++  +   Q +   +L  +I   ++L +          +     
Sbjct: 1236 RRDIPDEGTLSMLRRDIIRNDRLCQFSLLKELHHYIVYPAELEQHPFSCWKPSCMGKTPQ 1295

Query: 113  SI------QADVVESLIAALYLDGGIEVAGTFVD 140
            SI       ADV+E++  A  +  G + A  F++
Sbjct: 1296 SINAPSKWIADVLEAICGAYIIGHGEKGARYFLN 1329


>gi|255934909|ref|XP_002558481.1| Pc13g00300 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211583101|emb|CAP91099.1| Pc13g00300 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 144

 Score = 91.7 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 38/144 (26%), Positives = 73/144 (50%), Gaps = 8/144 (5%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           +SA     +E  + Y F ++SLL+KA      +   +  ++R   +GD  L L+++ L +
Sbjct: 5   LSAESIRAIESILNYEFHDKSLLDKAFEAPGAT-EARGGHQRQALIGDAALKLVLTELGY 63

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
               +A  GE+++   S VS E   ++   L L ++ R++   +  V     S+ A  +E
Sbjct: 64  E--GNASTGEITISRGSRVSNENLKRLGESLGLNAYFRLNPASQGVVPR---SMMATTME 118

Query: 121 SLIAALYLDGGIEVA--GTFVDKY 142
           ++I A+YLD G ++A     V++ 
Sbjct: 119 AIIGAVYLDSGKDMATTRALVNRL 142


>gi|330928085|ref|XP_003302123.1| hypothetical protein PTT_13822 [Pyrenophora teres f. teres 0-1]
 gi|311322704|gb|EFQ89784.1| hypothetical protein PTT_13822 [Pyrenophora teres f. teres 0-1]
          Length = 441

 Score = 91.7 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 75/210 (35%), Gaps = 25/210 (11%)

Query: 23  LEKA-LTHSSI-----------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
           L +A  TH S                   YERLE LGD  + L+ S  L+N F      E
Sbjct: 134 LHEAVFTHRSAIFDPSIPGSTLGQDLSLDYERLELLGDAYIELIASRALYNRFPHVDVPE 193

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL-- 128
           L +    LV   T  + +        ++  +   K    +   + AD+VE+ +AA+ L  
Sbjct: 194 LCMWRERLVENSTLGRFSHAYGFPDRLKHRAMWDKTSKQY-QKVVADIVEAYVAAIVLSD 252

Query: 129 -DGGIEVAGTFVDKYWKQRALK-SGKFRRDA--KTELQEWAHAKFGVTPEYKVTFRSGPD 184
            D G E A  ++ + W  + L    K   +   + EL      K       +    S  +
Sbjct: 253 PDNGFEAAEAWLTELWAPQLLGFREKIIENPQARNELNRLVLGKDVKLITKEEKPMSYDE 312

Query: 185 HD-PRFTVVVEI-----SGLAPAQGMDCSK 208
           +    + + + +     +      G   +K
Sbjct: 313 NSIQCYHIGIYLTGWGYNDEWLGSGHGQNK 342


>gi|258615164|ref|ZP_05712934.1| ribonuclease III [Enterococcus faecium DO]
          Length = 93

 Score = 91.3 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 1/80 (1%)

Query: 132 IEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
            +    F++K    +          D KT+LQE       V+ EY++    GP H+  F 
Sbjct: 1   FDTTHAFIEKVIFPKVKAGAFSHEMDHKTKLQEVLQKSGDVSIEYRLINEEGPAHERVFW 60

Query: 191 VVVEISGLAPAQGMDCSKRA 210
           + V +       G   SK+ 
Sbjct: 61  IEVYVDDQLIGTGQGKSKKL 80


>gi|327303976|ref|XP_003236680.1| dicer-like protein 2 [Trichophyton rubrum CBS 118892]
 gi|326462022|gb|EGD87475.1| dicer-like protein 2 [Trichophyton rubrum CBS 118892]
          Length = 1460

 Score = 91.3 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 51/283 (18%), Positives = 103/283 (36%), Gaps = 73/283 (25%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
             S +E  I Y+F  ++LL  +L+H S +     +Y+RLEFLGD IL  +++  LF     
Sbjct: 1178 LSKVEPLIEYSFTKKALLAASLSHPS-NPISGMTYQRLEFLGDSILDNIVTRALFRCKKE 1236

Query: 66   AKEGELSVRFNSLVSAETCSQVA--------------------------RELDLASFIRV 99
                ++ +   +LV+A+  + +                           R++ L  ++  
Sbjct: 1237 IPHQDMHLIRTALVNADFLAFLCMNTSTDETREDVCVSPTGEVEVTSSTRQVSLWQYMSH 1296

Query: 100  SS----------------------DLRKDVCSF---------MTSIQADVVESLIAALYL 128
            SS                      +  +    +              +D++ES++ A+++
Sbjct: 1297 SSTDIVETQQAMARTFEELRGQIENALRSGARYPWTLLSTLNAPKFFSDIIESILGAIFI 1356

Query: 129  D--GGIEVAGTFVDK-----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            D  G I     F+ +     Y ++     G      K  L   A +   ++ +Y V+   
Sbjct: 1357 DSRGSILACQKFLTRIGLMDYLQRVLEDDGIDFMHPKQRLGVVAQS---LSVQYVVSEVH 1413

Query: 182  GPDHDPRFTVVVEISGLAPAQ---GMDCSKRAAEQVAAAEVLK 221
                  ++   V +     ++   G+  S+  A   AA   L+
Sbjct: 1414 VKPGVTQWKCQVLVGDEEISRVDDGV--SQNQARAKAADLALE 1454



 Score = 87.4 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/149 (28%), Positives = 58/149 (38%), Gaps = 22/149 (14%)

Query: 17   FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
            F N  L+  A+T +S       +Y+RLEFLGD  L L  S  L        EG LS + +
Sbjct: 1003 FQNIQLVLTAITAASAREDI--NYQRLEFLGDSALKLHASMQLLAEHPLWHEGILSKKKD 1060

Query: 77   SLVSAETCSQVARELDLASFIRV--------------------SSDLRKDVCSFMTSIQA 116
            S+VS     + A +  L  FI                           K      T   A
Sbjct: 1061 SIVSNSRLWKAAVDTGLDQFILTTCFTGAKWRPLYNSTYTNNAGKIGEKSTRELSTKTLA 1120

Query: 117  DVVESLIAALYLDGGIEVAGTFVDKYWKQ 145
            DVVESLI A  +DGG       ++ +  +
Sbjct: 1121 DVVESLIGAAIIDGGENKVLHCLELFLPE 1149


>gi|309386042|gb|ADO66939.1| ribonuclease III [Enterococcus faecium]
          Length = 85

 Score = 91.3 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 1/84 (1%)

Query: 85  SQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
           S+ A+E     ++ +             ++  D+ E+ + ALYLD G +    F++K   
Sbjct: 2   SKFAKECHFDQYVLLGKGEENSGGRTRPALLCDLFEAFLGALYLDQGFDTTHAFIEKVIF 61

Query: 145 QRALKSG-KFRRDAKTELQEWAHA 167
            +          D KT+LQE    
Sbjct: 62  PKVKAGAFSHEMDHKTKLQEVLQK 85


>gi|327198659|emb|CCA61360.1| unnamed protein product [Diadromus pulchellus ascovirus 4a]
          Length = 257

 Score = 91.3 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 79/220 (35%), Gaps = 20/220 (9%)

Query: 18  ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE----GELSV 73
            N  +   A T  +  +  + +YE  E LGD  +   I + +   F   +       L+ 
Sbjct: 24  NNSKIFAAAFT--TADYDPKFNYEFFEQLGDLTINKFIVSYMSRRFPQLRNRNGVNVLAT 81

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL------- 126
                 S    S ++ +  L   +R++ +   D    M S+  DV E+L  A+       
Sbjct: 82  LRILYGSKNVLSGLSSKYGLDKLVRMTREESLDKTKSM-SVFEDVFEALFGAIEFVFDRD 140

Query: 127 -YLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
            +   G       +   +    +K   +   DAKT L E   A+   +  Y+    S  +
Sbjct: 141 NFPGMGYVFCYRILTAMFDDLDVKIDYESLVDAKTRLNE-LKAEHKFSLTYR---DSRDE 196

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               F     I G+A   G   +K+ A+  A+   +   G
Sbjct: 197 ASGMFRSTAVIDGIAAGSGESNTKKGAQIEASQRAIDWLG 236


>gi|321460750|gb|EFX71789.1| hypothetical protein DAPPUDRAFT_326825 [Daphnia pulex]
          Length = 204

 Score = 90.9 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 64/145 (44%), Gaps = 7/145 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTH--SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LEK +GY F N+  L+ ALTH  S+ +    +  +R E LGD+ LG LI    +  + + 
Sbjct: 38  LEKILGYEFQNKDNLKLALTHTISNPTKCPSKDSDRSESLGDKFLGALIMVNCYKTYPTY 97

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
             GEL+   + +   +T + +A    + + I      R  +      + AD+ E++ A++
Sbjct: 98  GAGELANLTSMITCNDTFAVLAVPALIPTTI---PGERISIEIDYPKVYADLFEAVAASI 154

Query: 127 YLDGG--IEVAGTFVDKYWKQRALK 149
           Y+D                ++    
Sbjct: 155 YVDCNEDFNTFRRVFFAIMRETIDN 179


>gi|156369805|ref|XP_001628164.1| predicted protein [Nematostella vectensis]
 gi|156215134|gb|EDO36101.1| predicted protein [Nematostella vectensis]
          Length = 474

 Score = 90.5 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 80/223 (35%), Gaps = 20/223 (8%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLE------FLGDRILGLLISTLLFN 61
               R+   F +  LL  ALTH        +  E++E       LG  +    I+  L  
Sbjct: 90  AFRNRLSLVFEDERLLRAALTHELCEEDLVKDKEKIEENSKLALLGHNLTSQYITEYLCF 149

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL-----RKDVCSFMTSIQA 116
            + +     +    N L + ET  +VA    L   IR   DL      K V      + +
Sbjct: 150 KYPNLPSEGVRQLHNFLTNRETLVKVADLTALPELIRTKHDLDSLKKEKHVEVTKEDVIS 209

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRA----LKSGKFRRDAKTELQEWAHAKFGVT 172
           D   +LI A+YLD G   A  FV  +   +     L       + +  L+    ++    
Sbjct: 210 DAFLALIGAIYLDQGSSEANKFVRDFLITQLYTQELNQVLQFENPEALLESMVLSEGHTK 269

Query: 173 PEYKVTFRSGPD-HDPRFTVVVEISGLAPAQGMDCS----KRA 210
           PE ++T +SG   H P + V +        +    +    KR 
Sbjct: 270 PEARITRQSGKATHLPVYVVGLFCGEELIGEAAGYNLVNAKRE 312


>gi|66822085|ref|XP_644397.1| hypothetical protein DDB_G0274077 [Dictyostelium discoideum AX4]
 gi|66823323|ref|XP_645016.1| hypothetical protein DDB_G0273051 [Dictyostelium discoideum AX4]
 gi|50057720|emb|CAC41976.2| putative RNaseIII [Dictyostelium discoideum]
 gi|60472520|gb|EAL70472.1| hypothetical protein DDB_G0274077 [Dictyostelium discoideum AX4]
 gi|60473215|gb|EAL71163.1| hypothetical protein DDB_G0273051 [Dictyostelium discoideum AX4]
          Length = 1203

 Score = 90.5 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 22/144 (15%)

Query: 18   ANRSLLEKALTHSSIS----------------HSYQESYERLEFLGDRILGLLISTLLFN 61
             N  +L + LTH S                    + + Y+RLEFLGD +L +  S  LF 
Sbjct: 887  TNNQVLREVLTHPSTKVISERKPIEKDQFQSYRPFMKDYQRLEFLGDSVLKITSSLYLFK 946

Query: 62   HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
             FD+  EG LS +       E  ++++R +     +R+            +   AD++E+
Sbjct: 947  KFDNEGEGLLSKKREFYTKNEYLTELSRRIGFDYILRI------TTIGDHSKPHADLIEA 1000

Query: 122  LIAALYLDGGIEVAGTFVDKYWKQ 145
             I A+Y++ G + +  ++ K+   
Sbjct: 1001 FIGAIYIECGFKDSFDWIIKWIFD 1024



 Score = 75.9 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 4/104 (3%)

Query: 41   ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS 100
            ERLEFLGD +L  +++  LF+ +   +EG L+   + LV+ E  S++ +    ++    S
Sbjct: 1102 ERLEFLGDAVLDFIVADYLFSKYKEQQEGYLTESKSKLVNNENLSKILK----SNKNIFS 1157

Query: 101  SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
               +     F      D +ES I   YL  G E     V K + 
Sbjct: 1158 PSQQDSFKHFSVKRMGDHIESYIGGFYLKFGFEKTKNRVYKLFD 1201


>gi|195996297|ref|XP_002108017.1| hypothetical protein TRIADDRAFT_52064 [Trichoplax adhaerens]
 gi|190588793|gb|EDV28815.1| hypothetical protein TRIADDRAFT_52064 [Trichoplax adhaerens]
          Length = 707

 Score = 90.1 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/180 (22%), Positives = 64/180 (35%), Gaps = 41/180 (22%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           +++E  + Y+F NRSLL  ALTH S S     SYE+L FLGD +L   I   L+  +   
Sbjct: 441 NSVETILNYSFRNRSLLMLALTHKSYSGLESISYEKLAFLGDTLLIYQICLFLYTQYTDY 500

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR---------------------- 104
           +  +  +    L        VA   DL  F+   S                         
Sbjct: 501 QPKDYHLLLEYLTCNRMYGIVAIASDLCKFLLHKSRELTLQIDEIYQALEADDVQSFSST 560

Query: 105 -KDVCSFMTSI----------------QADVVESLIAALYLDG--GIEVAGTFVDKYWKQ 145
            +  CS+                      D   +++AA++LD     + AG  ++     
Sbjct: 561 VQSGCSYKMKTTLLLEKLSIEQFVPKELGDTFAAVVAAVFLDNYPDEDTAGRIINSLLNP 620



 Score = 45.8 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 2/75 (2%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           L +A+T SS    +  + ERLEFLGDR L   I+        S    E+  R   L   +
Sbjct: 269 LLEAITLSSAQDHF--NLERLEFLGDRYLNYKITLTTLLEHPSWSINEVINRMRFLTKNK 326

Query: 83  TCSQVARELDLASFI 97
              ++     +  +I
Sbjct: 327 KLFRLGAGRRIPYYI 341


>gi|303315249|ref|XP_003067632.1| Type III restriction enzyme, res subunit family protein [Coccidioides
            posadasii C735 delta SOWgp]
 gi|240107302|gb|EER25487.1| Type III restriction enzyme, res subunit family protein [Coccidioides
            posadasii C735 delta SOWgp]
          Length = 1448

 Score = 90.1 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/261 (18%), Positives = 89/261 (34%), Gaps = 69/261 (26%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
             S +E  +GY F  + LL  A+TH S S     SY+RLEF+GD IL +++   LF     
Sbjct: 1141 LSEIEGLVGYTFKKKPLLLAAVTHPS-SKGSGHSYQRLEFVGDSILDIIVVQELFESPRG 1199

Query: 66   AKEGELSVRFNSLVSAETCSQVA--------------------------RELDLASFIRV 99
                ++ +   +LV+A+  + +                           R   L  F++ 
Sbjct: 1200 FHHFDMHLMRTALVNADFLAFLCMNAYREEDRGEAVENSKRRVTVAMTKRRAYLWGFMKH 1259

Query: 100  SSD------------------LRKDVCSFMTSIQ--------------ADVVESLIAALY 127
            S+                      D     +                 +D+VES++ A++
Sbjct: 1260 SASWDIVNAQQRAAKQYEKLHEEIDEKLRSSKTYPWTLLCRLDAAKFFSDIVESILGAIF 1319

Query: 128  LD--GGIEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            +D  G +     F++      + +R L         K  L   A     ++ +Y+     
Sbjct: 1320 IDSQGSMPACRIFLECIGLIPYLKRVLSEDLDLMHPKERLGLLA---GTLSVKYETKRTQ 1376

Query: 182  GPDHDPRFTVVVEISGLAPAQ 202
            G +   R+     +      +
Sbjct: 1377 GVE-PQRWECAARVGDEEVVR 1396



 Score = 85.9 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 20/147 (13%)

Query: 17   FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
            F+N SL+  A+  SS +     +Y+RLEFLGD +L L  S  L        EG L++R  
Sbjct: 969  FSNLSLVLTAI--SSSAAREASNYQRLEFLGDSLLKLHTSIQLAADHPLWPEGRLTMRKG 1026

Query: 77   SLVSAETCSQVARELDLASFIR-----------------VSSDLRKDVCSFM-TSIQADV 118
            ++VS    +  A +  L  FI                  +++    +    M T + ADV
Sbjct: 1027 NVVSNGYLANAALQTGLDKFILTKPFTGAKWRPSYNTDHINTGDMTEPTREMSTKVLADV 1086

Query: 119  VESLIAALYLDGGIEVAGTFVDKYWKQ 145
            VE+LI A  +DGG       +  +   
Sbjct: 1087 VEALIGAANIDGGENKILNCLKIFIPD 1113


>gi|167046032|gb|ABZ10547.1| dicer-like protein E [Trichoplax adhaerens]
          Length = 359

 Score = 89.7 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/180 (22%), Positives = 64/180 (35%), Gaps = 41/180 (22%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           +++E  + Y+F NRSLL  ALTH S S     SYE+L FLGD +L   I   L+  +   
Sbjct: 171 NSVETILNYSFRNRSLLMLALTHKSYSGLESISYEKLAFLGDTLLIYQICLFLYTQYTDY 230

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR---------------------- 104
           +  +  +    L        VA   DL  F+   S                         
Sbjct: 231 QPKDYHLLLEYLTCNRMYGIVAIASDLCKFLLHKSRELTLQIDEIYQALEADDVQSFSST 290

Query: 105 -KDVCSFMTSI----------------QADVVESLIAALYLDG--GIEVAGTFVDKYWKQ 145
            +  CS+                      D   +++AA++LD     + AG  ++     
Sbjct: 291 VQSGCSYKMKTTLLLEKLSIEQFVPKELGDTFAAVVAAVFLDNYPDEDTAGRIINSLLNP 350



 Score = 43.1 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
          +A+T SS    +  + ERLEFLGDR L   I+        S    E+  R   L   +  
Sbjct: 1  EAITLSSAQDHF--NLERLEFLGDRYLNYKITLTTLLEHPSWSINEVINRMRFLTKNKKL 58

Query: 85 SQVARELDLASFI 97
           ++     +  +I
Sbjct: 59 FRLGAGRRIPYYI 71


>gi|302693867|ref|XP_003036612.1| hypothetical protein SCHCODRAFT_30567 [Schizophyllum commune H4-8]
 gi|300110309|gb|EFJ01710.1| hypothetical protein SCHCODRAFT_30567 [Schizophyllum commune H4-8]
          Length = 216

 Score = 89.7 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 59/142 (41%), Gaps = 12/142 (8%)

Query: 18  ANRSLLEKALTHSSI-----------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
            +  +  +  TH S+           +       E+ E LGD +LGL+++T +   +   
Sbjct: 9   HDERIENQIFTHRSLFGRPTHVFEDRADDLAPDNEKFEHLGDTVLGLVVTTQIQQMYPGL 68

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           + G  +     +V  +  + ++ +  L   ++V    +        ++QAD+ E+ +  L
Sbjct: 69  RVGPSTKIRALVVGNQNLAAISVKYKLPERLKV-HAAQVVSLKASVNVQADLFEAYVGGL 127

Query: 127 YLDGGIEVAGTFVDKYWKQRAL 148
           +L  G+ V   ++   ++   +
Sbjct: 128 FLHRGLSVVEAWLKPLFRPYII 149


>gi|189190408|ref|XP_001931543.1| double-strand-specific ribonuclease Pac1 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187973149|gb|EDU40648.1| double-strand-specific ribonuclease Pac1 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 362

 Score = 89.7 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 76/210 (36%), Gaps = 25/210 (11%)

Query: 23  LEKA-LTHSSI-----------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
           L +A  TH S                   YERLE LGD  + L+ S  L+N F      E
Sbjct: 127 LHEAVFTHRSAIFDPSIPGSALGQDLSLDYERLELLGDAYIELIASRALYNRFPHVDVPE 186

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL-- 128
           L +    LV   T  + +        ++  +   K    +   + AD+VE+ +AA+ L  
Sbjct: 187 LCMWRERLVENSTLGKFSHAYGFPDRLKHRAMWDKTSKQY-QKVVADIVEAYVAAVVLSD 245

Query: 129 -DGGIEVAGTFVDKYWKQRALK-SGKFRRDA--KTELQEWAHAKFGVTPEYKVTFRSGPD 184
            D G E A  ++ + W  + L    K   +   + EL      K       +    S  +
Sbjct: 246 PDNGFETAEAWLTELWAPQLLGFREKIIENPQARNELNRLVLGKDVKLITKEEKPMSYDE 305

Query: 185 HD-PRFTVVVEISG-----LAPAQGMDCSK 208
           +    + + + ++G          G   +K
Sbjct: 306 NSIQCYYIGIYLTGWGYKDEWLGSGHGQNK 335


>gi|167046028|gb|ABZ10545.1| dicer-like protein D [Trichoplax adhaerens]
          Length = 351

 Score = 89.4 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/178 (24%), Positives = 69/178 (38%), Gaps = 43/178 (24%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S + +   Y F N   L  A THSS++    E+Y+RLE+LGD IL  L+   ++      
Sbjct: 174 SCILRNTDYQFNNFYWLRIAFTHSSVA---SENYQRLEYLGDAILEYLLIEFVYCRKPYF 230

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSS----DLRKDVCSFM----------- 111
             G++S   + +   +T S +A      + IR  S    D+   + +F            
Sbjct: 231 GPGKISHFKSVMTRNQTFSLIAIAFQFYTHIRCHSKLKLDIMDSIQNFKEILLDNHQDDH 290

Query: 112 -----------------------TSIQADVVESLIAALYLDGG--IEVAGTFVDKYWK 144
                                    + ADV E+ IAA+YLD G  +      V K  +
Sbjct: 291 QPDIGHFANLAYQLYTSNRYQKLPKVCADVFEAFIAAIYLDCGKKLRTVWKVVYKMVQ 348



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 55/155 (35%), Gaps = 37/155 (23%)

Query: 39  SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASF-- 96
           ++ERLE LGD  L  + +   F    + KEG +S+     VS    S+ ++   L  +  
Sbjct: 7   NHERLEILGDSYLKFITTADYFFRNPNMKEGAMSLMRAINVSNSHLSRTSKLKGLTLYQF 66

Query: 97  ----------------IR-----VSSDLRKDVCSFMTS----------IQADVVESLIAA 125
                           IR     V++++  D      S            +D VE L+  
Sbjct: 67  NTPFKLKQWLPPGFTCIRNNANLVANNMLTDGSKQRDSESFKQVMSVKNISDTVEGLVGV 126

Query: 126 LYLDGG-IEVAGTFVDKYWKQRALKSGKFRRDAKT 159
             L  G ++ A   +  +       +    +D K+
Sbjct: 127 YSLASGPVDAAR--LLPWIGLDIDPNVLIEKD-KS 158


>gi|322694902|gb|EFY86720.1| abhydrolase domain-containing protein [Metarhizium acridum CQMa
           102]
          Length = 333

 Score = 89.4 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 60/233 (25%), Positives = 89/233 (38%), Gaps = 49/233 (21%)

Query: 19  NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           +  L      H  +S   + SYERLE+LGD  L L+ S+L++  F S   G  S     L
Sbjct: 63  DPELEATVFRHPGLSDPLR-SYERLEWLGDAYLELIASSLIYQTFTSTPTGRCSQLREIL 121

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS--------IQADVVESLIAALYL-- 128
           +  +T +Q  RE  L S   + SDL+ D+     S         QAD+ E+ +AA  +  
Sbjct: 122 IRNKTLAQYFREYGLESKAHLPSDLKTDISRSRGSSSDKDIIKTQADMFEAYVAAAIISD 181

Query: 129 -DGGIEVAGTFVDKYW----KQRALKSGKFRR----------------------DAKTEL 161
            + G+    +++   W    K + L + K R+                       AK  L
Sbjct: 182 PENGMANTASWLKSLWARTIKNQILNNEKNRKLGTQPSSTAQGSTKDMASSSNLSAKERL 241

Query: 162 -QEWAHAKFGVTPEYKVTFRSGPDHD---PRFTVVVEISG-----LAPAQGMD 205
             E      GV   Y+   R G D D   P +TV   + G          G  
Sbjct: 242 RIEI--GVKGVLIRYEDMPRIGKDRDLGLPLYTVGAYLDGWGERNKLLGTGTA 292


>gi|238576066|ref|XP_002387900.1| hypothetical protein MPER_13150 [Moniliophthora perniciosa FA553]
 gi|215448751|gb|EEB88830.1| hypothetical protein MPER_13150 [Moniliophthora perniciosa FA553]
          Length = 298

 Score = 89.4 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 64/182 (35%), Gaps = 42/182 (23%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSI-----------SHSYQESYERLEFLGDR 49
           M +     L K       ++ +  +  TH S+            +      E+ E LGD 
Sbjct: 1   MHSFELPALPKI-----NSKEIERQIFTHRSVYGRPTHIFEDLPNDPNPDNEKFEHLGDS 55

Query: 50  ILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI--------RVSS 101
           +L L+++ LL       + G  +     +V+ +T + +++   L   +         +  
Sbjct: 56  VLSLVVTDLLLEMCPGLRVGPSTKIRAMIVANQTLATISQRYKLPHRLSVHPAQAEVLKM 115

Query: 102 DLRKDVCSFMTSI------------------QADVVESLIAALYLDGGIEVAGTFVDKYW 143
            +         SI                   ADV E+ +  LY+D G++   ++++  +
Sbjct: 116 SIHASGMCVSISILLFYRLLQTLKTFTCQRHLADVFEAFVGGLYIDQGLQAVQSWLNPLF 175

Query: 144 KQ 145
           + 
Sbjct: 176 RP 177


>gi|33322810|gb|AAQ07140.1|AF496451_1 ribonuclease III [Lactobacillus delbrueckii subsp. lactis]
          Length = 107

 Score = 89.4 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 3/107 (2%)

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
           +S  L+ HF    EGEL+   +++V  E  S+VA +       ++     K       ++
Sbjct: 2   VSDYLYRHFQHLNEGELTRLRSNIVRTEGFSKVALDCGFKKEXKLGVGEEKAGGRKRKAL 61

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG--KFRRDAKT 159
             DV E+   AL+LD GIE    F+ +      + +G     RD KT
Sbjct: 62  LEDVFEAFNGALFLDQGIEAVEKFLKQTVYP-LIAAGYFTXARDFKT 107


>gi|322704127|gb|EFY95726.1| abhydrolase domain-containing protein [Metarhizium anisopliae ARSEF
           23]
          Length = 340

 Score = 89.0 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 58/232 (25%), Positives = 88/232 (37%), Gaps = 47/232 (20%)

Query: 19  NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           +  L      H  +S   +  YERLE+LGD  L L+ S+L++  F S   G  S     L
Sbjct: 63  DPELEATVFLHPGLSDPLRG-YERLEWLGDAYLELIASSLIYQTFTSTPVGRCSQLREIL 121

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS--------IQADVVESLIAALYL-- 128
           +  +T +Q  RE  L S  ++  DL+KD+     S         QAD+ E+ +AA  +  
Sbjct: 122 IRNKTLAQYFREYGLESKAQLPGDLKKDISRGRGSSSDKDIIKTQADMFEAYVAAAIISD 181

Query: 129 -DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTEL--Q---------------------EW 164
            + G+    +++   W  R +K      D K +L  Q                     E 
Sbjct: 182 PENGMANTASWLKSLWA-RTIKDQIVANDRKRKLATQPNSTEQGSTKDMASHSNLSAKEK 240

Query: 165 AHAK---FGVTPEYKVTFRSGPDHD---PRFTVVVEISG-----LAPAQGMD 205
              +    GV   Y+   R G D D   P +TV   + G          G  
Sbjct: 241 LRIEIGVKGVLVRYEDMPRMGRDRDLGLPLYTVGAYLDGWGERNKLLGTGTA 292


>gi|156032684|ref|XP_001585179.1| hypothetical protein SS1G_13747 [Sclerotinia sclerotiorum 1980]
 gi|154699150|gb|EDN98888.1| hypothetical protein SS1G_13747 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1867

 Score = 89.0 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 78/223 (34%), Gaps = 32/223 (14%)

Query: 15   YAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLL---ISTLLFNHFDSAKEG 69
            Y F    LL  A TH +   S+    SY+RLEFLGD +L ++   ++           E 
Sbjct: 1579 YHFKYPRLLRSASTHPAYPFSYEQIPSYQRLEFLGDALLDMVQKMVAEYAC----DINEA 1634

Query: 70   ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
             +  + ++  + ++    A       +                    D+VE+ I A+++D
Sbjct: 1635 LIQAKADAKRAGKSEDDYA-----PDYWI--------TVRQPPKCLPDMVEAFIGAIFVD 1681

Query: 130  G--GIEVAGTF----VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS-- 181
                 E    F    +  Y+K  ++      +   T L  +     G   ++    R   
Sbjct: 1682 SEYKFEEVEKFFEMHIRWYFKDMSIYDTYANKHPTTFLTNFLQKNMGCE-DWAPVSREMP 1740

Query: 182  GPDHDPRFTVV-VEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            G D      V  V +     +     S R A+  AA + L + 
Sbjct: 1741 GEDGRKNVVVCGVIVHNKVVSTFQAESMRYAKVGAAKKALAQL 1783



 Score = 62.0 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 51/141 (36%), Gaps = 30/141 (21%)

Query: 20   RSLLEKALT--------H----SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
              L  +A+T        H    ++       +YERLEFLGD  L +  S  L+     + 
Sbjct: 1378 PDLALEAVTKDSDNSEEHGEEQTNFQRGMGNNYERLEFLGDCFLKMGTSISLYGLNPDSD 1437

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIRV-----------SSDLRKDVCSFMTSIQ- 115
            E    V    L+  +     A +L+L  FIR              +L +   +   +   
Sbjct: 1438 EFRYHVDRMCLICNKNLFNTALKLELYRFIRSAAFNRRAWYPEGPELLRGKTATAPNTHK 1497

Query: 116  ------ADVVESLIAALYLDG 130
                  ADV E++I A  L  
Sbjct: 1498 LGDKSIADVCEAMIGAALLSH 1518


>gi|145523303|ref|XP_001447490.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124415001|emb|CAK80093.1| unnamed protein product [Paramecium tetraurelia]
          Length = 419

 Score = 89.0 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 96/230 (41%), Gaps = 25/230 (10%)

Query: 15  YAFANRSLLEKALTHSSISHSYQE---------SYERLEFLGDRILGLLISTLLFNH-FD 64
           + F N ++L +ALT+      YQ          + E    +G  IL    S  L    + 
Sbjct: 94  FRFQNTNILAQALTNKIHELEYQSKKGTKYPFGNNEEFIVIGQMILEFYFSDYLMQRGYP 153

Query: 65  SAK-----EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
                     +L +    L++ +  +++A + ++ +F+++ +   +      + + A+ +
Sbjct: 154 KKDSSIKKPSDLVLLRQRLLNDKNLAEIAIQYNVHNFVQIGN---QTALKKNSKVLAETL 210

Query: 120 ESLIAALYLDGGIEVAG-TFVDKYWKQRALKSG------KFRRDAKTELQEWAHAKFGVT 172
           ++++AA Y D G ++     + +   +  L  G      + +++ KT   E+ + +  + 
Sbjct: 211 KAMVAAQYYDSGFDLEHTREILQSILKELLDKGQNVPIAELKQNPKTSFLEYINNQTDLI 270

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           P+  V ++   +    + + +E+           +KR  EQ+   E LK+
Sbjct: 271 PKVSVEWKKDENSINVYKIQLELDSYINITKTGANKRQTEQLVYQEALKQ 320


>gi|15221749|ref|NP_173854.1| NFD2 (NUCLEAR FUSION DEFECTIVE 2); RNA binding / ribonuclease III
           [Arabidopsis thaliana]
 gi|9743333|gb|AAF97957.1|AC000103_7 F21J9.11 [Arabidopsis thaliana]
 gi|15010594|gb|AAK73956.1| At1g24450/F21J9_210 [Arabidopsis thaliana]
 gi|20334854|gb|AAM16183.1| At1g24450/F21J9_210 [Arabidopsis thaliana]
 gi|332192410|gb|AEE30531.1| nuclear fusion defective 2 protein /ribonuclease III [Arabidopsis
           thaliana]
          Length = 191

 Score = 89.0 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 63/152 (41%), Gaps = 10/152 (6%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           A   + L+ +IGY F N +LL +A+TH+S S   QE+ + L   G  I+   +S      
Sbjct: 45  ATDLAKLQTQIGYKFNNINLLRRAMTHASFS---QENNKALSIFGTHIIETAVSLQFLAK 101

Query: 63  FDSAKEGELSVRFNSLVS-AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
                   L    + + +   +C+     L L   IRVS+          ++I      +
Sbjct: 102 DIDISSKALGRLISEVSNVESSCALDGDRLGLGKIIRVSTKTDAS----NSAILCTGFRA 157

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153
           +  A+ +D G       +  +WK    ++G+ 
Sbjct: 158 IFGAIAIDAG--TVDEAIKVFWKVHGARAGRL 187


>gi|284054885|ref|ZP_06385095.1| ribonuclease III [Arthrospira platensis str. Paraca]
          Length = 131

 Score = 89.0 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 3/101 (2%)

Query: 112 TSIQADVVESLIAALYLDGG-IEVAGTFVDKYWKQRALK--SGKFRRDAKTELQEWAHAK 168
            S  AD  E+++AALYL    +E+   ++D +  +RA +  +   R++ K  LQEW  + 
Sbjct: 7   ESRLADCFEAVLAALYLSTNTLELIRPWLDPHLLERATEIFNDPARQNYKAALQEWTQSC 66

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           + + P+YKV        + RFT  V +       G   + +
Sbjct: 67  YKILPQYKVNETGYAGDEGRFTASVWLRDEQLGTGTGKTIK 107


>gi|326485005|gb|EGE09015.1| dicer-like protein 2 [Trichophyton equinum CBS 127.97]
          Length = 1417

 Score = 89.0 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 51/282 (18%), Positives = 104/282 (36%), Gaps = 73/282 (25%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
            S +E  I Y+F  ++LL  +L+H S +   + +Y+RLEFLGD IL  +++  LF      
Sbjct: 1136 SKIEPLIDYSFTKKALLATSLSHPS-NLISRMTYQRLEFLGDSILDNIVTRALFRCKKEI 1194

Query: 67   KEGELSVRFNSLVSAETCSQVA--------------------------RELDLASFIRVS 100
               ++ +   +LV+A+  + +                            ++ L  ++  S
Sbjct: 1195 PHQDMHLIRTALVNADFLAFLCMNTSTDVTREDVCVSPTGEVEVTSSTHQVSLWQYMSHS 1254

Query: 101  S----------------------DLRKDVCSF---------MTSIQADVVESLIAALYLD 129
            S                         +   S+              +D++ES++ A+++D
Sbjct: 1255 STDIVETQQAIARTFEELRDQIEKALRSGASYPWTLLSTLNAPKFFSDIIESILGAIFID 1314

Query: 130  --GGIEVAGTFVDK-----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
              G I     F+ +     Y ++   + G      K  L   A +   ++ +Y V+    
Sbjct: 1315 SRGSILACQKFLARISLMDYLQRVLEEDGIDFMHPKQRLGVVAQS---LSVKYVVSEVHV 1371

Query: 183  PDHDPRFTVVVEISGLAPAQ---GMDCSKRAAEQVAAAEVLK 221
                 ++   V +     ++   G+  S+  A   AA   L+
Sbjct: 1372 KPGVTQWKCQVLVGDEEISRVDDGV--SQNQARAKAADLALE 1411



 Score = 79.7 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 52/136 (38%), Gaps = 20/136 (14%)

Query: 30   SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAR 89
            SS S     +Y+RLEFLGD  L L  S  L        EG LS + +S+VS     + A 
Sbjct: 971  SSTSAREDTNYQRLEFLGDSALKLHASMQLLAEHPLWHEGILSKKKDSIVSNSRLWKAAV 1030

Query: 90   ELDLASFIRV--------------------SSDLRKDVCSFMTSIQADVVESLIAALYLD 129
            +  L  FI                           K      T   ADVVESLI A  +D
Sbjct: 1031 DTGLDQFILTTCFTGAKWRPLYNSTYADNAGKIGEKSTRELSTKTLADVVESLIGAAIID 1090

Query: 130  GGIEVAGTFVDKYWKQ 145
            GG       ++ +  +
Sbjct: 1091 GGENKVLRCLELFLPE 1106


>gi|159468548|ref|XP_001692436.1| dicer-like protein [Chlamydomonas reinhardtii]
 gi|158278149|gb|EDP03914.1| dicer-like protein [Chlamydomonas reinhardtii]
          Length = 3556

 Score = 88.6 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 5/114 (4%)

Query: 15   YAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            Y F    L  +ALTH S   +      Y+RLEFLGD ++G ++S  LF          ++
Sbjct: 3277 YCFRRPELCLQALTHVSHPRAAGCGGGYQRLEFLGDAVMGTVVSFWLFRA--GGSAEAMT 3334

Query: 73   VRFNSLVSAETCSQVARELDLASFIRVSSD-LRKDVCSFMTSIQADVVESLIAA 125
             R  +LVS    +  A  L L   +RV S  L   + +F+  +QA + +  +A+
Sbjct: 3335 ARRKALVSNGPLAAAAVCLGLQRHLRVGSSALLGTLGAFVEEVQAALEDGSLAS 3388



 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 39   SYERLEFLGDRILGLL---ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91
            + +RLEFLGD +L  +    + L   H  +  EG LS + ++L++ E    VA + 
Sbjct: 2582 NNDRLEFLGDSVLKHIAVLFTFLRDRHDPTCHEGVLSFKRDALIANEVAMDVATDF 2637



 Score = 35.4 bits (81), Expect = 5.3,   Method: Composition-based stats.
 Identities = 12/20 (60%), Positives = 15/20 (75%)

Query: 112  TSIQADVVESLIAALYLDGG 131
              + ADVVE+LI A+YLD G
Sbjct: 3494 PKVLADVVEALIGAVYLDSG 3513


>gi|88602406|ref|YP_502584.1| ribonuclease III [Methanospirillum hungatei JF-1]
 gi|88187868|gb|ABD40865.1| RNAse III [Methanospirillum hungatei JF-1]
          Length = 151

 Score = 88.6 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 6/147 (4%)

Query: 1   MSALRY-STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLI 55
           M+A  +   LE+  GY F ++SLL +ALT  + S           + L  LGD ++ L+I
Sbjct: 1   MTAELFPEQLERITGYTFRDKSLLLRALTRLAYSKEQGLSEDSHLDALATLGDAVIELII 60

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
            T L        +G +S++   LV+       AR + L  ++R      +        + 
Sbjct: 61  LTRLV-KGGEHDKGAVSLKKMDLVNMSVLRDAARSIHLEQYVRWGKGEARMHVWTSGRVL 119

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKY 142
           A+ +E+   ALYLDGGI+ A   +++ 
Sbjct: 120 AECMEAFAGALYLDGGIDAAEEVLERL 146


>gi|326475978|gb|EGD99987.1| hypothetical protein TESG_07315 [Trichophyton tonsurans CBS 112818]
          Length = 1435

 Score = 88.6 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 43/149 (28%), Positives = 58/149 (38%), Gaps = 22/149 (14%)

Query: 17   FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
            F N  L+  A+T +S       +Y+RLEFLGD  L L  S  L        EG LS + +
Sbjct: 978  FQNIQLVLTAITATSAREDT--NYQRLEFLGDSALKLHASMQLLAEHPLWHEGILSKKKD 1035

Query: 77   SLVSAETCSQVARELDLASFIRV--------------------SSDLRKDVCSFMTSIQA 116
            S+VS     + A +  L  FI                           K      T   A
Sbjct: 1036 SIVSNSRLWKAAVDTGLDQFILTTCFTGAKWRPLYNSTYADNAGKIGEKSTRELSTKTLA 1095

Query: 117  DVVESLIAALYLDGGIEVAGTFVDKYWKQ 145
            DVVESLI A  +DGG       ++ +  +
Sbjct: 1096 DVVESLIGAAIIDGGENKVLRCLELFLPE 1124



 Score = 85.9 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 103/282 (36%), Gaps = 73/282 (25%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
            S +E  I Y+F  ++LL  +L+H S +   + +Y+RLEFLGD IL  +++  LF      
Sbjct: 1154 SKIEPLIDYSFTKKALLATSLSHPS-NLISRMTYQRLEFLGDSILDNIVTRALFRCKKEI 1212

Query: 67   KEGELSVRFNSLVSAETCSQVA--------------------------RELDLASFIRVS 100
               ++ +   +LV+A+  + +                            ++ L  ++  S
Sbjct: 1213 PHQDMHLIRTALVNADFLAFLCMNTSTDVTREDVCVSPTGEVEVTSSTHQVSLWQYMSHS 1272

Query: 101  S----------------------DLRKDVCSF---------MTSIQADVVESLIAALYLD 129
            S                         +   S+              +D++ES++ A+++D
Sbjct: 1273 STDIVETQQAIARTFEELRDQIEKALRSGASYPWTLLSTLNAPKFFSDIIESILGAIFID 1332

Query: 130  GG--IEVAGTFVDK-----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
                I     F+ +     Y ++   + G      K  L   A +   ++ +Y V+    
Sbjct: 1333 SRGLILACQKFLARIGLMDYLQRVLEEDGIDFMHPKQRLGVVAQS---LSVKYVVSGVHV 1389

Query: 183  PDHDPRFTVVVEISGLAPAQ---GMDCSKRAAEQVAAAEVLK 221
                 ++   V +     ++   G+  S+  A   AA   L+
Sbjct: 1390 KPGVTQWKCQVLVGDEEISRVDDGV--SQNQARAKAADLALE 1429


>gi|315051166|ref|XP_003174957.1| hypothetical protein MGYG_02485 [Arthroderma gypseum CBS 118893]
 gi|311340272|gb|EFQ99474.1| hypothetical protein MGYG_02485 [Arthroderma gypseum CBS 118893]
          Length = 1425

 Score = 88.2 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 52/286 (18%), Positives = 101/286 (35%), Gaps = 74/286 (25%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
             S +E  I Y+F  R+LL  +L+H S +     +Y+RLEFLGD IL  +++  LF     
Sbjct: 1142 LSKIEPLIDYSFTKRALLAASLSHPS-NLISGMTYQRLEFLGDSILDNVVTRALFRCDKE 1200

Query: 66   AKEGELSVRFNSLVSAETCSQVA--------------------------RELDLASFIRV 99
                ++ +   +LV+A+  + +                           R + L  ++  
Sbjct: 1201 IPHQDMHLIRTALVNADFLAFLCMKTSTDERREDVCASPTGNVKVTSSTRRVSLWQYMAH 1260

Query: 100  SSDLR-----------------------KDVCSF---------MTSIQADVVESLIAALY 127
            S+ L                        +    +              +D+VES++ A++
Sbjct: 1261 SASLDILETQQAMACTFEKLRDEIDDALRSGTRYPWTLLSTLNAPKFFSDIVESILGAIF 1320

Query: 128  LD--GGIEVAGTFVDK-----YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
            +D  G I     F+ +     Y  +     G      K  L   A +   ++ +Y V+  
Sbjct: 1321 IDSRGSIMACHKFLARIGLMGYLSRVLEDDGIDFMHPKQRLGIVAQS---LSVKYIVSDV 1377

Query: 181  SGPDHDPRFTVVVEISGLAPAQ---GMDCSKRAAEQVAAAEVLKRE 223
                   ++   V +     ++   G+  ++  A   AA   L + 
Sbjct: 1378 HVKPGVTQWKCQVLVGDQEISRVEDGVSQNQVRA--KAADLALDKL 1421



 Score = 87.1 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 66/159 (41%), Gaps = 24/159 (15%)

Query: 7    STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
            +T+   IG  F +  L+  A+T +S       +Y+RLEFLGD  L L  S  L       
Sbjct: 959  NTILSSIG--FKDIKLVLTAITATSA--RENTNYQRLEFLGDSALKLHASMQLLADHPIW 1014

Query: 67   KEGELSVRFNSLVSAETCSQVARELDLASFIR--------------------VSSDLRKD 106
             EG LS + +S+VS     + A +  L  FI                     V +  R+ 
Sbjct: 1015 HEGILSKKKDSIVSNSRLWKAAVDTGLDRFILTTCFTGAKWRPLYNSTYRHNVGTARREQ 1074

Query: 107  VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145
                 T   ADVVESLI A  +DGG       ++ +  +
Sbjct: 1075 TRELSTKTLADVVESLIGAAIVDGGENKVLRCLELFLPE 1113


>gi|297851136|ref|XP_002893449.1| hypothetical protein ARALYDRAFT_472903 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297339291|gb|EFH69708.1| hypothetical protein ARALYDRAFT_472903 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 190

 Score = 88.2 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 62/152 (40%), Gaps = 10/152 (6%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           A   +TL+ +IGY F N +LL +A+TH+S S   QE+ + L   G  I+   +S      
Sbjct: 44  ATDLATLQTQIGYKFNNTNLLRRAMTHASFS---QENNKALSIFGTNIIETSVSLQFLAK 100

Query: 63  FDSAKEGELSVRFNSLVS-AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
                   L      + +   +C+     L L   IRVS           ++I      +
Sbjct: 101 DIDISSKALRRLIAQVSNVESSCALDGDRLGLGKIIRVSPKTDAS----NSAILCAGFRA 156

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153
           +  A+ +D G+      +  +WK    + G+ 
Sbjct: 157 IFGAIAIDTGM--VDEAIKVFWKVHGDRPGRL 186


>gi|323307668|gb|EGA60933.1| Rnt1p [Saccharomyces cerevisiae FostersO]
          Length = 253

 Score = 88.2 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 66/171 (38%), Gaps = 25/171 (14%)

Query: 16  AFANRSLLEKALTHSSI---------SHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
              + ++  +   H S          S       ERLEFLGD IL  +++ +++N F   
Sbjct: 61  EIQDLAIRARVFIHKSTIKDKVYLSGSEMINAHNERLEFLGDSILNSVMTLIIYNKFPDY 120

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVS---SDLRKDVCSFMTSIQADVVESLI 123
            EG+LS    +LVS E   Q +   +    ++ +    D   +  +    + ADV E+ I
Sbjct: 121 SEGQLSTLRMNLVSNEQIKQWSIMYNFHEKLKTNFDLKDENSNFQNGKLKLYADVFEAYI 180

Query: 124 AALYLD---GGIEVAGTFVDKYWKQRALKS----------GKFRRDAKTEL 161
             L  D     +     ++ K  K    ++           K   +AK +L
Sbjct: 181 GGLMEDDPRNNLPKIRKWLRKLAKPVIEEATRNQVALEKTDKLDMNAKRQL 231


>gi|118370147|ref|XP_001018276.1| Dicer-related RNase III protein Dcr1p, putative [Tetrahymena
            thermophila]
 gi|89300043|gb|EAR98031.1| Dicer-related RNase III protein Dcr1p, putative [Tetrahymena
            thermophila SB210]
          Length = 1903

 Score = 87.8 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 93/249 (37%), Gaps = 36/249 (14%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKAL-THSSISHSYQ-ESYERLEFLGDRILGLLISTLLFN 61
            +  S  EK + Y F ++SLL KAL  HS+ +  +  + Y+ LEFLGD ++ +L+ +  ++
Sbjct: 1637 IAISGFEKILNYTFKDKSLLIKALNCHSNSNFEHYFQDYQILEFLGDALIEILVVSHGYH 1696

Query: 62   HFDSA-----KEGELSVRFNSLVSAETCSQVARELDLASF-IRVSS-------------- 101
               +               + L+S +  S++A       + + +S               
Sbjct: 1697 ISRNRQKKINSPYFFCEMKSLLLSNDFMSRMAILNKFHYYALNISKYQQDEIIQFIEDCN 1756

Query: 102  -----DLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR- 155
                        +    +  D+ ES+  A+ +D  I    +   K +    +    F + 
Sbjct: 1757 LNTKFKESVSHQANSPKVLGDLWESVAGAIIMDSDISTFVSIYGKLYAPYIIHFVTFYQK 1816

Query: 156  ---DAKTELQEWAHAKF--GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
               + K ++Q  A   +         V    G     +  V + I  +    G+D S+  
Sbjct: 1817 IIFNVKEKVQLVAQQTYEQLGKITEVVKDTDG---QYKVKVTILIKQIKVGTGIDYSETL 1873

Query: 211  AEQVAAAEV 219
            AE+ A  + 
Sbjct: 1874 AEKKAFQDA 1882



 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 40/103 (38%), Gaps = 3/103 (2%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            +  LL ++ +  S S    ++ E LE +GD ++  + S  L+ H  +  E  L++     
Sbjct: 1360 DLELLIESFSQISYSK--TKNLELLEVIGDVVIKYISSLYLYLHLPNQSENALTMIRTIF 1417

Query: 79   VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            ++ +     A    L  +++       D   F         E+
Sbjct: 1418 INNKYLGISAFRNGLQFYVQTKRPSSYD-WRFNLFNLNSFTEA 1459


>gi|224613128|dbj|BAH24234.1| dsRNA-specific ribonuclease RNaseIII [Porcelain vine witches'-broom
           phytoplasma]
          Length = 131

 Score = 87.8 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 36/96 (37%), Gaps = 2/96 (2%)

Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV 171
             I AD  E+L  A+YLD G   A            L    +  D KT+LQE   ++   
Sbjct: 4   KRIMADTFEALFGAIYLDLGYLTAKKVFHNIVLPH-LAKTIYIIDFKTQLQEIVQSEKK- 61

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           T +YK+    G  H   F   V +       G   +
Sbjct: 62  TIQYKIVQEQGFAHSKNFVAEVYLEKNLLGTGEGNT 97


>gi|213408739|ref|XP_002175140.1| mitochondrial ribosomal protein subunit L3 [Schizosaccharomyces
           japonicus yFS275]
 gi|212003187|gb|EEB08847.1| mitochondrial ribosomal protein subunit L3 [Schizosaccharomyces
           japonicus yFS275]
          Length = 322

 Score = 87.1 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 84/237 (35%), Gaps = 22/237 (9%)

Query: 4   LRYSTLEKRIGY--AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           ++  TL+KR+    +F NR+L  +AL   S       +   L  +G  +  L     +  
Sbjct: 48  VKIYTLKKRLRLLESFPNRTL-ARALIDKSFPTHISNTNSLLWPIGRVLRDLYTLEYIKT 106

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASF------------IRVSSDLRKDVCS 109
            +    E  ++V  + L      +Q+A    L +             I  S    +    
Sbjct: 107 KYPRLPEEGVAVLKDGLAGTAVLNQLAAMFGLETIGKDENLVDGMGKIIYSRVPAESFRQ 166

Query: 110 FMTSIQADVVE----SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQE 163
              S +++ V     S++A +Y+  G   A  FV  +   R L        +  K +L+ 
Sbjct: 167 GRESYKSEAVARTILSILAGVYIHEGNAAARLFVQNFMLSRYLPPDTLMLFQKPKQQLRA 226

Query: 164 WAHAKFGVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
                    P Y +   +G    +P F V V   G    QG   S + ++  AA   
Sbjct: 227 LCRRLGVSKPVYYLEAETGRKSREPVFVVGVYADGERIGQGQASSLKLSQSQAAHNA 283


>gi|167046030|gb|ABZ10546.1| dicer-like protein D [Placozoa sp. DMJ-2008]
          Length = 351

 Score = 86.7 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/178 (24%), Positives = 68/178 (38%), Gaps = 43/178 (24%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           S + +   Y F N   L  A THSS++    E+Y+RLE+LGD  L  L+   ++      
Sbjct: 174 SCILRNTDYQFNNFYWLRIAFTHSSVA---SENYQRLEYLGDATLEYLLIEFVYCRKPYF 230

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSS----DLRKDVCSFM----------- 111
             G++S   + +   +T S +A      + IR  S    D+   + +F            
Sbjct: 231 GPGKISHFKSVMTRNQTFSLIAIAFQFYTHIRCHSKLKLDIMDSIQNFKEILLDNHQDDH 290

Query: 112 -----------------------TSIQADVVESLIAALYLDGG--IEVAGTFVDKYWK 144
                                    + ADV E+ IAA+YLD G  +      V K  +
Sbjct: 291 QPDIGHFANLAYQLYTSNRYQKLPKVCADVFEAFIAAIYLDCGKKLRTVWKVVYKMVQ 348



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 55/155 (35%), Gaps = 37/155 (23%)

Query: 39  SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASF-- 96
           ++ERLE LGD  L  + +   F    + KEG +S+     VS    S+ ++   L  +  
Sbjct: 7   NHERLEILGDSYLKFITTADYFFRNPNMKEGAMSLMRAINVSNSHLSRTSKLKGLTLYQF 66

Query: 97  ----------------IR-----VSSDLRKDVCSFMTS----------IQADVVESLIAA 125
                           IR     V++++  D      S            +D VE L+  
Sbjct: 67  NTPFKLKQWLPPGFTCIRNNANLVANNMLTDGSKQRDSESFKQVMSVKNISDTVEGLVGV 126

Query: 126 LYLDGG-IEVAGTFVDKYWKQRALKSGKFRRDAKT 159
             L  G ++ A   +  +       +    +D K+
Sbjct: 127 YSLASGPVDAAR--LLPWIGLDIDPNVLIEKD-KS 158


>gi|50897087|dbj|BAD34724.1| Dicer-related RNase III protein Dcl1p [Tetrahymena thermophila]
          Length = 1275

 Score = 86.7 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 93/249 (37%), Gaps = 36/249 (14%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKAL-THSSISHSYQ-ESYERLEFLGDRILGLLISTLLFN 61
            +  S  EK + Y F ++SLL KAL  HS+ +  +  + Y+ LEFLGD ++ +L+ +  ++
Sbjct: 1009 IAISGFEKILNYTFKDKSLLIKALNCHSNSNFEHYFQDYQILEFLGDALIEILVVSHGYH 1068

Query: 62   HFDSA-----KEGELSVRFNSLVSAETCSQVARELDLASF-IRVSS-------------- 101
               +               + L+S +  S++A       + + +S               
Sbjct: 1069 ISRNRQKKINSPYFFCEMKSLLLSNDFMSRMAILNKFHYYALNISKYQQDEIIQFIEDCN 1128

Query: 102  -----DLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR- 155
                        +    +  D+ ES+  A+ +D  I    +   K +    +    F + 
Sbjct: 1129 LNTKFKESVSHQANSPKVLGDLWESVAGAIIMDSDISTFVSIYGKLYAPYIIHFVTFYQK 1188

Query: 156  ---DAKTELQEWAHAKF--GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
               + K ++Q  A   +         V    G     +  V + I  +    G+D S+  
Sbjct: 1189 IIFNVKEKVQLVAQQTYEQLGKITEVVKDTDG---QYKVKVTILIKQIKVGTGIDYSETL 1245

Query: 211  AEQVAAAEV 219
            AE+ A  + 
Sbjct: 1246 AEKKAFQDA 1254



 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 40/103 (38%), Gaps = 3/103 (2%)

Query: 19  NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           +  LL ++ +  S S    ++ E LE +GD ++  + S  L+ H  +  E  L++     
Sbjct: 732 DLELLIESFSQISYSK--TKNLELLEVIGDVVIKYISSLYLYLHLPNQSENALTMIRTIF 789

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
           ++ +     A    L  +++       D   F         E+
Sbjct: 790 INNKYLGISAFRNGLQFYVQTKRPSSYD-WRFNLFNLNSFTEA 831


>gi|294611999|gb|ADF27744.1| ribonuclease III [Ehrlichia ruminantium]
          Length = 71

 Score = 86.7 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 39/70 (55%)

Query: 106 DVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWA 165
              +  ++   + +E+LI A+YLDGG++ A  F+  +WK  A       +DAKT LQEWA
Sbjct: 2   CGGANNSNNLENALEALIGAIYLDGGLKAAKDFIFLFWKNSATHMKVPPQDAKTILQEWA 61

Query: 166 HAKFGVTPEY 175
            +K    P Y
Sbjct: 62  QSKGFPAPSY 71


>gi|321463655|gb|EFX74669.1| hypothetical protein DAPPUDRAFT_251524 [Daphnia pulex]
          Length = 244

 Score = 86.3 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 55/161 (34%), Gaps = 35/161 (21%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              LE+ + Y F  ++LL +AL +S     ++  YERL  LGD  LG L + + F+    
Sbjct: 40  LEKLEEILNYEFRYKNLLLQALIYSRKIAVFRPCYERL-HLGDAFLGGLAAEMCFDALPF 98

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL-----------RKDVCSFMTS- 113
                LS   + LV   +   +  +     F++                +K       S 
Sbjct: 99  YPPSVLSELKSVLVCNNSLGVLVVKFKFHKFLKRLPREIQTLIDTFAKKQKANGHKFPSA 158

Query: 114 ----------------------IQADVVESLIAALYLDGGI 132
                                 +  D+ ES+  A+Y D   
Sbjct: 159 YYEIVKLGNPPEDYAATNVPPDVLGDIFESIAGAVYKDSNY 199


>gi|154149851|ref|YP_001403469.1| ribonuclease III [Candidatus Methanoregula boonei 6A8]
 gi|153998403|gb|ABS54826.1| ribonuclease III [Methanoregula boonei 6A8]
          Length = 154

 Score = 86.3 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 62/146 (42%), Gaps = 12/146 (8%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSY----QESYERLEFLGDRILGLLISTLLFN 61
            S LE R+G+   +R++L+ ALT  +  +       +  + L  +GD +LG +++T L+ 
Sbjct: 5   LSELETRLGFTIKDRTILDAALTRQAYINENPTAGNDCMDPLATVGDAVLGAVVATRLYE 64

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS-IQADVVE 120
                 +G L+      V+ +     A +  L  FIR      K+      S       E
Sbjct: 65  SGI-RDKGTLTSEKIRGVNRDKTRAFAEKFQLHKFIRWGKGEEKNKVWEQGSQAFDAAFE 123

Query: 121 SLIAALYLDG------GIEVAGTFVD 140
           +LI A++LD       G+      ++
Sbjct: 124 ALIGAVFLDTRRQGKDGLAAVQVLLE 149


>gi|255633098|gb|ACU16904.1| unknown [Glycine max]
          Length = 188

 Score = 86.3 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 8/127 (6%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
             TL+K++GY F +  LL +A+TH+S S   +E+ +    LG  ++   +S  L +    
Sbjct: 45  LETLQKQLGYTFKSIDLLRRAVTHASFS---EENNKAFAILGASVIETSVSFHLLSRDVD 101

Query: 66  AKEGELSVRFNSLVS-AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
               EL+ R + + +   +C+     L L   +RVS            ++      ++  
Sbjct: 102 LSSKELNRRLSQITNVDSSCAVDGTRLGLHKVVRVSPKTNSSA----PAVVCGAFRAIFG 157

Query: 125 ALYLDGG 131
           A+ +D G
Sbjct: 158 AVAIDTG 164


>gi|196001803|ref|XP_002110769.1| hypothetical protein TRIADDRAFT_54015 [Trichoplax adhaerens]
 gi|190586720|gb|EDV26773.1| hypothetical protein TRIADDRAFT_54015 [Trichoplax adhaerens]
          Length = 366

 Score = 86.3 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 78/229 (34%), Gaps = 34/229 (14%)

Query: 23  LEKALTHSSISHSYQE--------------------------SYERLEFLGDRILGLLIS 56
           L  ALTH S  H   +                          S +RL  LG   +   ++
Sbjct: 102 LRMALTHHSFLHQNDDVNYMDDNDYNTGTGVADFKSVEDVYQSNDRLTILGYNAMRHFVT 161

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
             ++  + + K   +    N  ++ +    +A  L +A  IR    L   V    T I +
Sbjct: 162 EYVYVRYPNLKSSHIYDMINFFMNRDGMVNIAHYLGIADLIRSKILLYNPV---KTRIIS 218

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWK----QRALKSGKFRRDAKTELQEWAHAKFGVT 172
           DV  +++ A+Y+D G   A +FV  +       R              L      +    
Sbjct: 219 DVFCAIVGAIYMDLGPIEARSFVQDFILVQQYGREFSDIIKIEHPIFMLTAILKMQRMQP 278

Query: 173 PEYKVTFRSGPD-HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            E ++   SG   H P + V         ++G   S +AA+  A  E L
Sbjct: 279 LEARLLRESGRATHFPTYVVGAFSGSKLLSEGAGPSIKAAKSAACQEAL 327


>gi|255080010|ref|XP_002503585.1| ribonuclease III/double strand RNA binding domain-containing
           protein [Micromonas sp. RCC299]
 gi|226518852|gb|ACO64843.1| ribonuclease III/double strand RNA binding domain-containing
           protein [Micromonas sp. RCC299]
          Length = 352

 Score = 85.9 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 47/194 (24%), Positives = 76/194 (39%), Gaps = 17/194 (8%)

Query: 41  ERLEFLGDRILGLLISTLLFNHFDS----AKEGELSVRFNSLVSAETCSQVARELDLASF 96
           ER+ F GD+ L L ++  L             GE+SV  +S  S    +++  +L     
Sbjct: 107 ERMAFFGDKYLNLSVAKALERQLLDGDETMSIGEMSVLCSSARSNMLFAKLLPKLLTPDM 166

Query: 97  IRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF--VDKYWKQRALKSGKFR 154
           +    +         +     ++ES +  +Y  GG E A     +  +  + A K     
Sbjct: 167 VAAVPEEAIMEGRQHS--VGTLLESCVYLVYTTGGGEGAAAVDELGTFLLEEAEKQAADV 224

Query: 155 RDAKTELQEWAHAKFGVTPEYKVT-----FRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            + K  L E           Y VT       SG  H  RF   VE+ G+  A+ +  +KR
Sbjct: 225 HNYKGALYELIAKGVDG---YVVTKDKMGEASGGAHPQRFETEVELDGVR-ARFLARNKR 280

Query: 210 AAEQVAAAEVLKRE 223
            AE+ AA  VL++ 
Sbjct: 281 EAERGAAKRVLEKL 294


>gi|123974683|ref|XP_001313928.1| RNase3 domain containing protein [Trichomonas vaginalis G3]
 gi|121895887|gb|EAY01056.1| RNase3 domain containing protein [Trichomonas vaginalis G3]
          Length = 810

 Score = 85.9 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/144 (28%), Positives = 67/144 (46%), Gaps = 7/144 (4%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI---SHSYQESYERLEFLGDRILGLLISTLLFN- 61
                ++  Y F N  ++ + L   S    S  +  +YERLE+LGD +L LL    +FN 
Sbjct: 374 IRKFTEKFNYTFKNWHIVWQFLIDPSYYFRSSQFIHNYERLEYLGDTVLDLLFGISVFNG 433

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            ++ A EG +S    + V   T S+++  LDL S +  S+    D+    +   AD+ E+
Sbjct: 434 CYNYANEGLMSELKIAFVKNRTFSKISEILDLKSLLCTSTPTNYDLGKKGS---ADLFEA 490

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQ 145
           L  A+ LD  I        K  ++
Sbjct: 491 LFGAILLDSNISKCIEIFKKIIEE 514



 Score = 78.6 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 75/187 (40%), Gaps = 15/187 (8%)

Query: 4   LRYSTLEKRI--GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           + +  L K +      +N +    ALTHSS+    + +YER+EF+GD I+   +      
Sbjct: 557 VDHEKLSKILELDINPSNVTQFTVALTHSSVG---KYNYERIEFIGDLIVKYSLIVSQME 613

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC--------SFMTS 113
            F +A E  +S+  + L S +   + A ++ L   + +                 S    
Sbjct: 614 AFPNATESGMSIASSFLKSNDFLGKRAYKIGLIDLLSIVRKENSSEDAAKGDIDESRTPK 673

Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDK--YWKQRALKSGKFRRDAKTELQEWAHAKFGV 171
              DV E++ AA+    GI  A  FV K    K+  + S       K +L  +   +F +
Sbjct: 674 YYGDVFEAITAAIAGTFGIITAMRFVIKNSIGKEWPIDSNHPNLPIKVQLLYFLQNEFKI 733

Query: 172 TPEYKVT 178
            P +   
Sbjct: 734 IPNFITI 740


>gi|281414106|ref|ZP_06245848.1| RNAse III [Micrococcus luteus NCTC 2665]
          Length = 74

 Score = 85.9 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 2/67 (2%)

Query: 23 LEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
          LE+ALTH S ++      + ERLEFLGD +LG +++  +F  +    EG+L+ R  ++VS
Sbjct: 8  LERALTHRSFAYEQGGLPTNERLEFLGDSVLGYVVTDHIFTVYPDLAEGDLARRRAAVVS 67

Query: 81 AETCSQV 87
              ++V
Sbjct: 68 TRALAKV 74


>gi|167046034|gb|ABZ10548.1| dicer-like protein E [Placozoa sp. DMJ-2008]
          Length = 359

 Score = 85.5 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/180 (22%), Positives = 64/180 (35%), Gaps = 41/180 (22%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           +++E  + Y+F NRSLL  ALTH S S     SYE+L FLGD +L   I   L+  +   
Sbjct: 171 NSVETILNYSFRNRSLLMLALTHKSYSGLESISYEKLAFLGDTLLIYQIYLFLYTQYTDY 230

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR---------------------- 104
           +  +  +    L        VA   DL  F+   S                         
Sbjct: 231 QPKDYHLLLEYLTCNRMYGIVAIASDLCKFLLHKSRELTLQIDEIYQALEADDVQSFSST 290

Query: 105 -KDVCSFMTSI----------------QADVVESLIAALYLDG--GIEVAGTFVDKYWKQ 145
            +  CS+                      D   +++AA++LD     + AG  ++     
Sbjct: 291 VQSGCSYKMKTTLLLEKLSIEQFVPKELGDTFAAVVAAVFLDNYPHEDTAGRIINSLLNP 350



 Score = 43.1 bits (101), Expect = 0.029,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 25 KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
          +A+T SS    +  + ERLEFLGDR L   I+        S    E+  R   L   +  
Sbjct: 1  EAITLSSAQDHF--NLERLEFLGDRYLNYKITLTTLLEHPSWSINEVINRMRFLTKNKKL 58

Query: 85 SQVARELDLASFI 97
           ++     +  +I
Sbjct: 59 FRLGAGRRIPYYI 71


>gi|168021275|ref|XP_001763167.1| dsRNA-specific nuclease dicer and related ribonuclease
           [Physcomitrella patens subsp. patens]
 gi|162685650|gb|EDQ72044.1| dsRNA-specific nuclease dicer and related ribonuclease
           [Physcomitrella patens subsp. patens]
          Length = 961

 Score = 85.1 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 55/242 (22%), Positives = 82/242 (33%), Gaps = 51/242 (21%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC 84
            ALT +S   ++  SYER E L D  L  ++S  LF  F S  EG+L+     +VS    
Sbjct: 511 LALTAASCQETF--SYERAELLSDAYLEWVVSHRLFLKFPSKHEGQLTRMRQKIVSNSVL 568

Query: 85  SQVARELDLASFIR-----------------VSSDLRKDVCSFMTS-------------- 113
            Q A E  L S+I+                    DLR    S   S              
Sbjct: 569 YQHALEKGLQSYIQADRFAPSRWAAPGVPPAFDEDLRDGDDSDKESKPEVEREVVEIVGR 628

Query: 114 ---IQADVVE-------SLIAALYLD--GGIEVAGTFVDKYWKQRALKSGKFRRDAKTEL 161
              ++A  V        ++  + +L    G     T V +   Q  +            L
Sbjct: 629 LTDLRAAAVNNENFARVAVKHSYHLHLRHGSTALETQVFEPLLQPMVSPETLPIHPVRGL 688

Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           QE    +     EYKV+           TV V + G+         K+ A+++ A   L 
Sbjct: 689 QERCQQEAEGL-EYKVSRAESVA-----TVEVYVDGVQIGSTQSAQKKMAQKLGARNALV 742

Query: 222 RE 223
           + 
Sbjct: 743 KL 744



 Score = 42.8 bits (100), Expect = 0.033,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 14/32 (43%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
               +    P+YK    SGP H  +FT  V +
Sbjct: 782 LCLKRQWPMPQYKCVLESGPAHAKKFTFSVRV 813


>gi|19113464|ref|NP_596672.1| mitochondrial ribosomal protein subunit L3 [Schizosaccharomyces
           pombe 972h-]
 gi|74644177|sp|O43042|RM03_SCHPO RecName: Full=60S ribosomal protein L3, mitochondrial; Flags:
           Precursor
 gi|2950480|emb|CAA17794.1| mitochondrial ribosomal protein subunit L3 [Schizosaccharomyces
           pombe]
          Length = 326

 Score = 85.1 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 81/244 (33%), Gaps = 36/244 (14%)

Query: 5   RYSTLEKRIGYAFANR-SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  TL+KRIG   +    +L +AL   ++  + Q S E+L  +G       +   +   +
Sbjct: 46  KVYTLKKRIGLPESYPMKVLVQALIDKTVVQNPQYSNEKLWSIGKVFGDFYVLEYIKCKY 105

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC-----SFMTSIQADV 118
               E  +    N  + ++  SQ+A    L    R    L++             +    
Sbjct: 106 PRLPEEAVHGMQNGWMGSKALSQLATIWGL-EVQRREEGLQESFGKVLAKRADPEMLRKP 164

Query: 119 VE------------SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ---- 162
            E            +++  +YL  G      F++ +   + L       D +T LQ    
Sbjct: 165 GEIYKDEAARRAILAILGGVYLHQGFNDTKKFINDHILSKQL-------DPRTMLQLQWP 217

Query: 163 -----EWAHAKFGVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
                          P Y++   +G    +P F +          QG   S   AEQ AA
Sbjct: 218 RRQLSRLCKRLSLKEPVYRIIAETGRKSREPVFVIGAYSGHHLLGQGQASSLNLAEQQAA 277

Query: 217 AEVL 220
              L
Sbjct: 278 YNSL 281


>gi|296417647|ref|XP_002838464.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634403|emb|CAZ82655.1| unnamed protein product [Tuber melanosporum]
          Length = 398

 Score = 85.1 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 46/253 (18%), Positives = 72/253 (28%), Gaps = 33/253 (13%)

Query: 2   SALRYSTLEKRIGYAFANR-SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           ++ + + L  R+          L +AL H S   +   +   L  LG  ++    +  L 
Sbjct: 109 TSAKLAALHARLSLHPKFPVQTLARALIHPSADPNPLFNNRSLTTLGSALINYYATEWLL 168

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELD--------------LASFIRVS------ 100
             +       L    ++ V A+  + + RE                L  F R+       
Sbjct: 169 CTYPRLPAEVLRAALSAYVGAKALASMGREWGVESAFEPRADVDAGLLQFKRLPPGPEVE 228

Query: 101 ---------SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151
                       R           A  V S  A +YL  G+     F  ++   R L   
Sbjct: 229 ASGYKWWQEKGERWTNGVPEEEATASFVTSTFAGVYLHEGVGPVKQFFRQHVLSRKLDID 288

Query: 152 KFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSK 208
           K         EL      +    P  +    +G     P F V V        +G   S 
Sbjct: 289 KLFNFVQPTRELSSLCSREGFEPPIARHISETGRRSIAPVFVVGVYSGLEKIGEGHGGSM 348

Query: 209 RAAEQVAAAEVLK 221
             A   AA   LK
Sbjct: 349 NEARIRAAVNALK 361


>gi|269966648|ref|ZP_06180727.1| hypothetical protein VMC_21570 [Vibrio alginolyticus 40B]
 gi|269828715|gb|EEZ82970.1| hypothetical protein VMC_21570 [Vibrio alginolyticus 40B]
          Length = 445

 Score = 85.1 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 44/178 (24%), Positives = 72/178 (40%), Gaps = 17/178 (9%)

Query: 51  LGLLISTLLFNHFDSAKEGELSVRFNSL---VSAETCSQVARELDLASFIRVSSDLRKDV 107
           L L+   L+ N    A  G +SV   +L   V  +       EL L   IR  S +    
Sbjct: 14  LELVAVHLIQNTVGLASTGHVSVVKKALIAGVQGKLL-----ELGLIDKIRKGSGI---T 65

Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA-KTELQEWAH 166
            +    I+  VV  L+   ++   I     ++ K  +   ++         K  LQE+A 
Sbjct: 66  DAESEKIERQVVMQLLGTSWVMNQI----GWLYKLAQTLDIRLDASNEKPMKMVLQEYAQ 121

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           ++    P+Y V   SGP H+  F+V   I     A G   SK+ A + AA ++ ++  
Sbjct: 122 SRKLQAPQYDVVEISGPQHNQVFSVQCSIVNEK-AVGSGNSKKKASEDAAIKLYQKLN 178



 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
            K  +D+KT+LQE A     + P Y++    G +H+  F V    +G     G   S   
Sbjct: 370 NKSGKDSKTQLQEVAQDLKLLLPIYEIAQTEGEEHNLIFKVKCSFNGQFTF-GEGTSFNV 428

Query: 211 AEQVAAAEVLKR 222
           A Q AA  +L++
Sbjct: 429 ASQQAAMVMLQK 440


>gi|321456672|gb|EFX67773.1| hypothetical protein DAPPUDRAFT_115150 [Daphnia pulex]
          Length = 228

 Score = 85.1 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 70/193 (36%), Gaps = 39/193 (20%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
              +EK IGY F N+ LL +A+THSS  ++   ESY   E++GDR+LG  ++  +  +  
Sbjct: 26  LEEVEKTIGYIFKNKLLLIQAMTHSSYKNNCLTESYNEQEWIGDRVLGFEMAKFVSLNCQ 85

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV-------------------SSDLRK 105
                  S  F +L S E  + +     +   I++                         
Sbjct: 86  D-TVDAKSATFATLTSNEFWAVLTVRHGIHKHIKLCDNNLTAKIDAFAEQQTRNGHQHMH 144

Query: 106 DVCSFMTSI----------------QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK 149
                + S+                 ADV E+L  A++ D G     T+         + 
Sbjct: 145 KFFEIVESVDDPELLFATFTEPPKELADVWEALAGAIFQDSGFSNDITW--AVIAPLLVP 202

Query: 150 SGKFRRDAKTELQ 162
            GK     K  +Q
Sbjct: 203 DGKISYWPKNPVQ 215


>gi|312220987|emb|CBY00928.1| hypothetical protein [Leptosphaeria maculans]
          Length = 495

 Score = 84.7 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 58/260 (22%), Positives = 91/260 (35%), Gaps = 60/260 (23%)

Query: 19  NRSLLEKA-LTHSSISHSYQE-----------SYERLEFLGDRILGLLISTLLFNHFDSA 66
           N   L +A  TH S   +  +            YERLE+ GD  + L+ +  L N F   
Sbjct: 151 NEPHLHQAVFTHRSAVINPGDLVAMSKLDLGLDYERLEYSGDAYIELIATRALCNRFPQV 210

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF-MTSIQADVVESLIAA 125
              EL      LV   T S+ +         R+S  L  +  S     + AD+ E+ IA 
Sbjct: 211 DVPELCSWRERLVENSTLSKFSDAYGFPD--RLSHRLFVERGSKAWMKVSADIFEAYIAG 268

Query: 126 LYL---DGGIEVAGTFVDKYWKQRALK-SGKFRRDA--KTELQEWAHAKFGVTPEYK--- 176
           L     + G  +A  ++ + W  + L    K   +   K EL +    K GVT +Y+   
Sbjct: 269 LVESDPEHGFHIAEEWLTELWAPQLLSFQAKVIENPKAKDELSKLVMCK-GVTLQYREDK 327

Query: 177 -VTFRSGPDHDPRFTVVVEI-----SGLAPAQGMDCSK------------------RAAE 212
            +TF +G     R+ + + +            G   +K                  + A 
Sbjct: 328 PMTFDTGS--IQRYYIGIYLTGWGYEDEWIGSGEGQNKSQAGIAAATAAIRNSAVVKDAA 385

Query: 213 QVAA---------AEVLKRE 223
           Q  A          E L +E
Sbjct: 386 QKKAELLQSKRLEKEALAKE 405


>gi|290983750|ref|XP_002674591.1| predicted protein [Naegleria gruberi]
 gi|284088182|gb|EFC41847.1| predicted protein [Naegleria gruberi]
          Length = 809

 Score = 84.7 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 41/148 (27%), Positives = 72/148 (48%), Gaps = 12/148 (8%)

Query: 14  GYAF-ANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLFN--HFDSAK 67
           GY F  +  L+  A T  S +H     +  YERLEF+GD ++ L     L      D +K
Sbjct: 357 GYRFLKDPLLIRVAHTFPSYAHKMNFGRGHYERLEFMGDSVVNLTACVELIKSCRNDDSK 416

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           +G+ +  F  L++ ++ ++ A +L ++     SSD       F    Q++V+ES+I ALY
Sbjct: 417 KGDWNAGFTVLIANDSITREAEKLQISEHFLNSSD------KFSKKAQSNVIESIIGALY 470

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRR 155
           +  GI  A +F  +     ++     ++
Sbjct: 471 MAEGIRGARSFAKELLIPTSIDFKCLKK 498



 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/291 (16%), Positives = 100/291 (34%), Gaps = 84/291 (28%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHS-----------------------------Y 36
              L+  + Y F +  L+++AL   S +++                             +
Sbjct: 529 IEKLQDILHYRFRDVGLIQEALISCSYNNTFMDLRNVPMTEKIQKFLKKRNDSKIVGLYH 588

Query: 37  QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA--ETCSQVARELDLA 94
             + E+L+ LG  +L  +++  ++  F  A+  +L++  + ++S   +  S +  +    
Sbjct: 589 LYNNEQLKLLGSALLKFMVTEFVYKRFTEAQPSKLTLLAHQIISKQGKVFSAIHEKFRFD 648

Query: 95  SFIRVSSDLRKDVCSFMTSIQA--DVVESLIAALYLDGG-----IEVAG----------- 136
            F+     ++ D+ +  + IQ   D   +L+ A+++D        E A            
Sbjct: 649 QFL-----MKTDIDADYSEIQQSYDCFTALLGAIFMDQDCLFYKFEFATISNTYTEELAN 703

Query: 137 ----------------------TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE 174
                                 +F+  Y +Q  L         K  LQ          P 
Sbjct: 704 STDPCSSYFLKRHDVTPDKFFYSFLFPYIEQFELSPYTIEPPKKHTLQHLIQVNHKSVPS 763

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           Y        D    F V + ++G   ++G+  SK  AE  A  + ++  G+
Sbjct: 764 YV----KNQDVSQEFCVTIMVNGQEFSKGV-SSKSFAE--AEEQAIE-MGL 806


>gi|168021239|ref|XP_001763149.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162685632|gb|EDQ72026.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 496

 Score = 84.7 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 56/289 (19%), Positives = 100/289 (34%), Gaps = 74/289 (25%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSI------------------------------- 32
           LR+  L +++G +  +R LL + L H S                                
Sbjct: 204 LRFRILSEKLGSSIHSRELLLRILVHKSYYLSKMPQSMKENKLRKPLMSWQRSETMDDDN 263

Query: 33  ----SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG----------ELSVRFN-- 76
               S ++ E+  +L  +GD +L L  S  L         G          + ++R    
Sbjct: 264 LMSFSDAHGEARLQLALVGDTVLNLAASLHLIRRNPLLSTGLWESFVFVCRKWTLRKELD 323

Query: 77  -----------SLVSAETCSQV-ARELDLASFIRVSSDLRKDVCSFMTSIQ-------AD 117
                      + V     ++V    LDL   +       +      T++        AD
Sbjct: 324 SLSCDAGFNNGAKVCNSNLARVWCTLLDLRELVLCDPPFSQSKKPSATTLLELQMKTCAD 383

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
            +E+ I  LY++ G+E A  FV+       L   + +R+    L E         P+YK+
Sbjct: 384 TLEAYIGGLYVEKGLESALKFVETR-LLPLLLLAEPKRNPVALLHERCVLTLQEKPDYKL 442

Query: 178 TFRSGPDHDPR----FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
               G D+         + V + GL  + G+  S++ A + AA + L +
Sbjct: 443 I---GIDNQNTPNELCRIRVYVKGLRMSTGIGKSQKLARRDAAEKALLK 488


>gi|221104212|ref|XP_002155760.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 363

 Score = 84.7 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 79/251 (31%), Gaps = 46/251 (18%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----------------ESY-------- 40
                + R+   F +  L+  AL+HSS     +                E          
Sbjct: 84  EIKAFQFRLNTHFKDEGLMISALSHSSFVDELKLFNEQLVTSNELGKKFEDNDFQKRLDL 143

Query: 41  ---------ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91
                    E+L  +G  +   +I T L+  F +      +   N L+S      +A+ L
Sbjct: 144 KNLMSSISSEKLALVGMELSISVIKTALYKRFPNLTVHACNDIINFLISRSNIVHLAKNL 203

Query: 92  DLASFIRVSSDLRKDVCSF-------MTSIQADVVESLIAALYLDGGIEVAGTFVD---- 140
            +   + +S ++     +             +D   +LI A+ +D G   +  FV+    
Sbjct: 204 AIEELLLLSKEIENQDVNDQFYTNFIKEDFISDAFFALIGAIEIDQGYNASKKFVEDFVV 263

Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKF-GVTPEYKVTFRSGPDHD-PRFTVVVEISGL 198
               Q  L       + K EL+           P  +V   +G   D P + V +     
Sbjct: 264 ALIDQEELSKYIKLENPKQELESILQMHGIFCKPVARVIAETGISTDFPFYYVGIYCDKF 323

Query: 199 APAQGMDCSKR 209
              +G   S R
Sbjct: 324 KIGEGSGYSIR 334


>gi|238586858|ref|XP_002391299.1| hypothetical protein MPER_09293 [Moniliophthora perniciosa FA553]
 gi|215455774|gb|EEB92229.1| hypothetical protein MPER_09293 [Moniliophthora perniciosa FA553]
          Length = 267

 Score = 84.7 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 74/214 (34%), Gaps = 21/214 (9%)

Query: 21  SLLEKALTHSSISHSYQES---------YERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71
            ++++A TH +    YQ+            +L  +G+ ++GL  +  +   +       L
Sbjct: 5   DIIQQACTHQTFLQLYQKHKPDDPAPATNAQLAAIGNSLMGLFATEFVRASYPYLPTRVL 64

Query: 72  SVRFNSLVSAETCSQVARELDLASFIRV--SSDLRKDVCSFMTSIQADVVESLIAALYLD 129
               ++ V   TC+ VA+E+     +R   S        +  +     +  +L A +Y  
Sbjct: 65  KAAVSAHVGPLTCANVAQEMGAVPLLRWHRSRGTLTKPGTLHSDALTSIPRALTAFVYRK 124

Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPR 188
             +            Q  ++      D K  L E         PE      +G   + P 
Sbjct: 125 RSLPSGRAI------QVDIRGMLKFLDPKKALLEMVEKYGRERPE---IQETGRYSNSPV 175

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           F V +        +G   S + AE  AA + L R
Sbjct: 176 FVVGIYSGEEQLGEGFGSSLKMAEYRAAEDALHR 209


>gi|13358446|ref|NP_078726.1| Ribonuclease III [Lymphocystis disease virus 1]
          Length = 251

 Score = 84.7 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 83/224 (37%), Gaps = 40/224 (17%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE----LSVRFNSL 78
           L +A T +S+      +YE  E LGD +    +    +  F   +  +    ++    + 
Sbjct: 31  LIQAFTPASVDPII--NYESFEILGDGVAAYFLPMYFYKTFPQLQNAKGVKAIARLKINY 88

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL--YLDGGIE--- 133
            S  + + +A+ L    +I+   +L+ D       +  DV ES + A+   LDG      
Sbjct: 89  ASRRSFATIAKFLGFWPYIKKPKNLKCD----QKKLLEDVFESFLGAVCLILDGHFNVEG 144

Query: 134 ----VAGTFVDKYWKQRALKSG-KFRRDAKTELQEWA---HAKFGVTPEYKVTFRSGPDH 185
               V   F+   +    ++   K   D KT L+E      A+ GV   Y+         
Sbjct: 145 VGAAVCFNFLKNIFDTMTIEINYKALFDPKTRLKELMDIYTAELGVL-AYR--------- 194

Query: 186 DPRF--TVVVEISGLAPAQGMDCSKRAAEQVAA---AEVLKREG 224
              F       I           +K+  EQ ++    E+L+++G
Sbjct: 195 --HFNNKTDCYIGDKLMITVYGSNKKDREQDSSDKVLELLEKQG 236


>gi|321460745|gb|EFX71784.1| hypothetical protein DAPPUDRAFT_111332 [Daphnia pulex]
          Length = 134

 Score = 84.4 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 2/91 (2%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           LEK +GY F N+  L+ ALTH++ +      +  +RLE LGD+ LG +I    +  + + 
Sbjct: 38  LEKILGYEFQNKDNLKLALTHTTSNPIKCPSKDSDRLETLGDKFLGAMIMVKYYKTYPTY 97

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFI 97
             GEL+   + +    T + +A ++ L   +
Sbjct: 98  GAGELANLTSMITCNGTFAVLAVKMGLHGHL 128


>gi|145485799|ref|XP_001428907.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124395996|emb|CAK61509.1| unnamed protein product [Paramecium tetraurelia]
          Length = 316

 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/238 (16%), Positives = 91/238 (38%), Gaps = 32/238 (13%)

Query: 15  YAFANRSLLEKALTHSSISHSYQE---------SYERLEFLGDRILGLLISTLLFNH--- 62
           + F N ++L +ALT+      +Q          + E    +G  IL    S  L      
Sbjct: 6   FRFQNINILAQALTNKIHELEFQSKKGIKYPFGNNEEFVVIGQMILEFYFSDYLIQRGYF 65

Query: 63  -----FDSAK-----EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
                + +         ++      L++ +  + +A +  L + +++ +   +       
Sbjct: 66  ITLSRYPNKDSSIKKPSDIVQLRQRLLNEKNLADIALQYSLPNIVQIGN---QTALKRNP 122

Query: 113 SIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQ-----RALKSGKFRRDAKTELQEWA 165
            I A+ +++++AA Y D G   E         +K+     + +   + +++AK+   E+ 
Sbjct: 123 KILAESLKAILAAQYYDSGFDLEHVREITQPLFKELLDKGQNIPIAELKQNAKSSFLEFI 182

Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +    + P+  + ++   +    F V +E+  L        +KR  EQ+   E L + 
Sbjct: 183 NNFTDLKPKVSIEWKKDANSANVFKVQLELDSLLNITRTGINKRQTEQLVYHEALMKL 240


>gi|321468043|gb|EFX79030.1| hypothetical protein DAPPUDRAFT_319984 [Daphnia pulex]
          Length = 488

 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 65/183 (35%), Gaps = 39/183 (21%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             +  E  + Y   ++ +L +A TH   +    ++Y+RLE +GD  LG L +   F    
Sbjct: 83  SLAKFENILHYTSNDKEVLLEAFTHG--NSMKSQNYQRLELIGDAALGFLSALNFFKKSL 140

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSF------------- 110
           +   G+++   ++ V  +T    A +      ++ +   L K +  F             
Sbjct: 141 THTSGDITKLRSACVCNDTFGVWAAKYGFHEHVQNLPPILLKQLNDFLEVVERENFTFAP 200

Query: 111 -----------------MTSIQADVVESLIAALYLDGGIE------VAGTFVDKYWKQRA 147
                            + S  ADV E++  A+ +D  +       V   F+   +    
Sbjct: 201 FERELAANGQIMATQVAIPSFLADVFEAVEGAIIIDANLSFETLERVYARFMTPVYDSPP 260

Query: 148 LKS 150
           L  
Sbjct: 261 LSP 263



 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 69/212 (32%), Gaps = 69/212 (32%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHFD 64
               E+ + Y+F  + +L +ALT     +S +  +Y+RLE +GD      ++        
Sbjct: 330 VKAFEEILNYSFNYKEVLLEALT---YGNSIRSLNYQRLEVIGDAPFERELAE------- 379

Query: 65  SAKEGELSVRFNSLVSAETCS-QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
                          + E  + QVA                      + S Q DV E++ 
Sbjct: 380 ---------------NEEIIATQVA----------------------IPSFQTDVFEAVS 402

Query: 124 AALYLDG--GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            A  +D     E    F   +             +           +   TP   +TF+ 
Sbjct: 403 GAFIIDSDLSFETLENFFAPFMNSVYDSPPVSPFN-----------QLEKTPG--ITFQK 449

Query: 182 G---PDHDPRFTVVVEISGLAPAQGMDCSKRA 210
           G   PD  P F   V  +G   A G + ++R 
Sbjct: 450 GKARPDGRPTF--SVYRNGALLATGNNNNRRK 479


>gi|73953914|ref|XP_868240.1| PREDICTED: similar to Ribonuclease III (RNase III) (Drosha) (p241)
           isoform 5 [Canis familiaris]
          Length = 148

 Score = 83.2 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 7/86 (8%)

Query: 142 YWKQRALKSGKFRRDAKTELQEWA-----HAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
           +W +  L       D K++LQ+         K    P YK     GP H   +TV V   
Sbjct: 22  FWNEFILNQD--WNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFK 79

Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLKR 222
           G     G   S + AE  AA + L++
Sbjct: 80  GERIGCGKGPSIQQAEMGAAMDALEK 105


>gi|56692721|ref|YP_164179.1| RNase III [Singapore grouper iridovirus]
 gi|42517433|gb|AAS18099.1| RNase III [Singapore grouper iridovirus]
          Length = 375

 Score = 83.2 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 78/225 (34%), Gaps = 24/225 (10%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           EK + +    R L  K  T  S+      +YE LE +GD + G        N F      
Sbjct: 15  EKYMPFVLRRRDLWAKVFTPKSV--DPVNNYEALEIVGDGLAGCFFPIYFINRFPQLNSA 72

Query: 70  E----LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           E    ++    +  S ++ + +A  L     ++  +D      S    +  DV E+ + A
Sbjct: 73  EGVKLVARLKINYASRKSFAAIAGSLGFWQHVKKPTDTVITPTS-KEILLEDVFEAFLGA 131

Query: 126 LYLDG---------GIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEY 175
           + +           G+ V   F+   + +  +        DAKT L+E    K     + 
Sbjct: 132 ISIAVDHHFGIPALGVAVVYDFLKAVFDKIDISLNYVDLFDAKTRLKELIDVKKSELGD- 190

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            + +  G +    F     +            K+  E+ AAA  L
Sbjct: 191 -LRYVHGNNITQIF-----LGERLVGSATGPIKKDREKDAAARAL 229


>gi|225457085|ref|XP_002280078.1| PREDICTED: similar to NFD2 (NUCLEAR FUSION DEFECTIVE 2); RNA
           binding / ribonuclease III [Vitis vinifera]
 gi|297733813|emb|CBI15060.3| unnamed protein product [Vitis vinifera]
          Length = 183

 Score = 83.2 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 8/130 (6%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           +L   TL+K+IGY F +  LL +A+THSS S   +E+ + L  LG   +   +S      
Sbjct: 38  SLALETLQKQIGYTFQSIGLLRRAMTHSSFS---EENNKALSILGASTIETSVSLQYLKK 94

Query: 63  FDSAKEGELSVRFNSLVS-AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
              A   +L+ R + +     +C+  A  L L   IRVS            ++      +
Sbjct: 95  DIEASAKDLNRRISEISQVESSCAVDAMRLGLQKVIRVSPKTNAST----PAVVCGAFRA 150

Query: 122 LIAALYLDGG 131
           +  A+ +D G
Sbjct: 151 IFGAIAMDTG 160


>gi|530452|emb|CAA83781.1| ribonuclease III [Mycoplasma capricolum subsp. capricolum ATCC
          27343]
          Length = 84

 Score = 83.2 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 2/80 (2%)

Query: 4  LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFN 61
          +      ++      ++ + ++ALTH+S ++  +   SY+RLEFLGD IL + +S  LF 
Sbjct: 1  MNIKNFFEKYNIKINDQQIYKEALTHNSYANERKLKYSYQRLEFLGDAILQMYVSKFLFF 60

Query: 62 HFDSAKEGELSVRFNSLVSA 81
          H+    EGEL+   +S V  
Sbjct: 61 HYSKLGEGELTRLRSSTVRE 80


>gi|164424566|ref|XP_963538.2| hypothetical protein NCU06766 [Neurospora crassa OR74A]
 gi|157070568|gb|EAA34302.2| predicted protein [Neurospora crassa OR74A]
          Length = 1421

 Score = 83.2 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 4/93 (4%)

Query: 3    ALRYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLF 60
            + +   LEK + Y F  +SLL +A+TH S +   + +  YERLEFLGD IL +++   L 
Sbjct: 1037 SKQLEPLEKAMDYTFNKKSLLIEAMTHPSCAGLGTNESCYERLEFLGDAILDVIVVKRLM 1096

Query: 61   NH--FDSAKEGELSVRFNSLVSAETCSQVAREL 91
                 +     ++    +S+V+A+  + +A E 
Sbjct: 1097 AETGPNELAHNDMHEHLSSVVTADIMAFLAMEW 1129



 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 43/113 (38%), Gaps = 22/113 (19%)

Query: 49   RILGLLISTLLFNHF---DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK 105
             ++   I   +  H     +  E  LS   + LV+     + +R+  L  +I  S+  +K
Sbjct: 890  YVVCKPIGKAVAAHHSIVPNHHERLLSQWKDKLVNNVRLCRASRDFGLDEYIINSAASKK 949

Query: 106  DVCSFMT-------------------SIQADVVESLIAALYLDGGIEVAGTFV 139
                F+                     + ADVVESLI A Y+ GG+  A   V
Sbjct: 950  WRPKFVEDYMDEMKSPISAETRQMSSKMVADVVESLIGAAYMCGGMSKALECV 1002


>gi|161783812|sp|Q7SCC1|DCL2_NEUCR RecName: Full=Dicer-like protein 2; Includes: RecName:
            Full=Endoribonuclease dcl-2; Includes: RecName:
            Full=ATP-dependent helicase dcl-2
 gi|18376024|emb|CAB91758.2| related to RNA helicase/RNAseIII CAF [Neurospora crassa]
          Length = 1540

 Score = 83.2 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 4/93 (4%)

Query: 3    ALRYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLF 60
            + +   LEK + Y F  +SLL +A+TH S +   + +  YERLEFLGD IL +++   L 
Sbjct: 1156 SKQLEPLEKAMDYTFNKKSLLIEAMTHPSCAGLGTNESCYERLEFLGDAILDVIVVKRLM 1215

Query: 61   NH--FDSAKEGELSVRFNSLVSAETCSQVAREL 91
                 +     ++    +S+V+A+  + +A E 
Sbjct: 1216 AETGPNELAHNDMHEHLSSVVTADIMAFLAMEW 1248



 Score = 74.7 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 47/165 (28%), Positives = 68/165 (41%), Gaps = 28/165 (16%)

Query: 1    MSALRYSTLEKRIG-YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILG---LLIS 56
            MS +    +  R+G     N  L+  AL   S       +YERLEF+GD IL     L +
Sbjct: 959  MSLVAADLMYNRLGCLQLDNLPLITTALI--SSGSRGPTNYERLEFIGDTILKFCACLTA 1016

Query: 57   TLLFNHF---DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT- 112
            + L  H     +  E  LS   + LV+     + +R+  L  +I  S+  +K    F+  
Sbjct: 1017 SALSAHHSIVPNHHERLLSQWKDKLVNNVRLCRASRDFGLDEYIINSAASKKWRPKFVED 1076

Query: 113  ------------------SIQADVVESLIAALYLDGGIEVAGTFV 139
                               + ADVVESLI A Y+ GG+  A   V
Sbjct: 1077 YMDEMKSPISAETRQMSSKMVADVVESLIGAAYMCGGMSKALECV 1121


>gi|302845712|ref|XP_002954394.1| hypothetical protein VOLCADRAFT_106340 [Volvox carteri f.
            nagariensis]
 gi|300260324|gb|EFJ44544.1| hypothetical protein VOLCADRAFT_106340 [Volvox carteri f.
            nagariensis]
          Length = 2391

 Score = 83.2 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 61/154 (39%), Gaps = 28/154 (18%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLLFNH 62
                +E+ +G+ FA+  L  +ALTH S   + S    Y+R+EFLGD +LG++ S   F  
Sbjct: 2108 NVLAVEELLGHTFAHPKLCVQALTHVSHPTASSCGGGYQRVEFLGDGVLGMVASVWAFCS 2167

Query: 63   FDSAK-----------------------EGELSVRFNSLVSAETCSQVARELDLASFIRV 99
              S                            ++    +LVS    +  A    L   +R 
Sbjct: 2168 VPSRDTIRPVPTSSTSLWIRVPSPHGGTAEHMTTHRTALVSNGPLAAAAVRRGLHQHLRT 2227

Query: 100  SS-DLRKDVCSFMTSIQADVV--ESLIAALYLDG 130
             S  L   + +F+ + Q      E+ +A  YL+ 
Sbjct: 2228 GSMSLMAAINNFVAAYQEGDEGPETYLAQRYLES 2261



 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 15/83 (18%)

Query: 18   ANRSLLEKA--LTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
             +R LL  A  LT  +       + +RLEFLGD +L      LL + +   +E       
Sbjct: 1960 RDRRLLLVATSLTAPAAGDPVF-NNDRLEFLGDAVL-----KLLAHVYVYLRE------R 2007

Query: 76   NSLVSAETCSQVARELDLASFIR 98
             + V+ +  +  A E  + + + 
Sbjct: 2008 VAGVNGKRLAD-AVEALIGAHVL 2029


>gi|327282012|ref|XP_003225738.1| PREDICTED: interferon-inducible double stranded RNA-dependent
           protein kinase activator A-like [Anolis carolinensis]
          Length = 329

 Score = 83.2 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 60/169 (35%), Gaps = 4/169 (2%)

Query: 57  TLLFNHFDSAKEGELSV---RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
             +          +L        +L     C   A E+ +  F    +           S
Sbjct: 43  EEIVASKPGKTPIQLLHEYGTKANLNPIYECENAAGEVHMPIFTYKVTLGNVTGTGEGPS 102

Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP 173
            +     +  AAL +  G  V    V  +    A+   + + +    LQE A  K    P
Sbjct: 103 KKIAKHRAAEAALNIMKGNSVVCIAVPDHLIPGAVNQAQNKTNPVGSLQELAIQKGWKLP 162

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           EY +   +GP H   FTV   I       GM  SK+ A++ AA ++L++
Sbjct: 163 EYSMAQETGPPHKREFTVTCRIEAFVE-TGMGTSKKLAKRNAAEKLLRK 210


>gi|321457594|gb|EFX68677.1| hypothetical protein DAPPUDRAFT_329838 [Daphnia pulex]
          Length = 291

 Score = 82.8 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 65/183 (35%), Gaps = 39/183 (21%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             +  E  + Y   ++ +L +A TH   +    ++Y+RLE +GD  LG L +   F    
Sbjct: 83  SLAKFENILHYTSNDKEVLLEAFTHG--NSMKSQNYQRLELIGDAALGFLSALNFFIKSL 140

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSF------------- 110
           +   G+++   ++ V  +T    A +      ++ +   L K +  F             
Sbjct: 141 THTSGDITKLRSACVCNDTFGVWAAKYGFHEHVQNLPPILLKQLNDFLEVVERENFTFAP 200

Query: 111 -----------------MTSIQADVVESLIAALYLDGGIE------VAGTFVDKYWKQRA 147
                            + S  ADV E++  A+ +D  +       V   F+   +    
Sbjct: 201 FERELAANGQIMATQVAIPSFLADVFEAVEGAIIIDANLSFETLERVYARFMTPVYDSPP 260

Query: 148 LKS 150
           L  
Sbjct: 261 LSP 263


>gi|196000070|ref|XP_002109903.1| hypothetical protein TRIADDRAFT_20536 [Trichoplax adhaerens]
 gi|190588027|gb|EDV28069.1| hypothetical protein TRIADDRAFT_20536 [Trichoplax adhaerens]
          Length = 190

 Score = 82.8 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 2/71 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
            +  E+ IG  F +  LL KA TH S   ++     Y+RLEFLGD IL  ++++ ++  F
Sbjct: 120 LTDFEESIGVEFKHIRLLAKAFTHPSAGLNHLTIGDYQRLEFLGDAILSYMLASHVYRQF 179

Query: 64  DSAKEGELSVR 74
              +EG LSVR
Sbjct: 180 PHYREGHLSVR 190



 Score = 65.1 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 3/103 (2%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F    EG+LSV  ++LV+ +   ++ ++L L  F+  S +  K+     +   A+ VE+
Sbjct: 1   MFPDLSEGDLSVYRSALVNNKQLGRLGKKLKLDEFLAYSHEALKNNNLDRS--IANGVEA 58

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKT-ELQE 163
           L  A+YL+ G++       K       +      +  T  LQE
Sbjct: 59  LFGAMYLENGLDRVREIFGKLTFDDDSELMGTWMNLVTHPLQE 101


>gi|321259818|ref|XP_003194629.1| hypothetical protein CGB_F1490W [Cryptococcus gattii WM276]
 gi|317461101|gb|ADV22842.1| Hypothetical Protein CGB_F1490W [Cryptococcus gattii WM276]
          Length = 433

 Score = 82.8 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 55/268 (20%), Positives = 95/268 (35%), Gaps = 70/268 (26%)

Query: 19  NRSLLEKALTHSSISHSYQE-----------SYERLEFLGDRILGLLISTLLFNHFDSAK 67
           +R LL +  TH+S   + ++             E+LE +GD +LG +++ LL + + +  
Sbjct: 170 DRELLRQVFTHTSYVGARKQSALFDKEAFHHDNEKLEHVGDALLGCIVTCLLHDLYPNLN 229

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL- 126
            G  +      V  +T SQ++R   +   +    +   ++    T   A++ E+ +A L 
Sbjct: 230 PGNATEMKAICVCNQTLSQLSRRYKMPERLITDVNA-TEILKNGTKTTANIFEAYVAGLH 288

Query: 127 --YL--------DGG--------------------IEVAGTFVDKYWKQR--------AL 148
             YL        DGG                     E    +V  Y K+         A+
Sbjct: 289 YSYLKHGNTKDVDGGDGPKTHGQGLEHLQEWLRPLFEPIAEWVLGYMKKEQERLEAETAV 348

Query: 149 KSGKFRRD---------AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---S 196
           K+G    D          K  L E   ++    P Y      G D    +  +V      
Sbjct: 349 KAGSMDTDLDDLANGASGK--LNELFISRGAGMPVY-TYEPWGVD---MWKAIVIARNRD 402

Query: 197 GLAP-AQGMDCSKRAAEQVAAAEVLKRE 223
           G     +     K+ A  VAA +VL + 
Sbjct: 403 GKEWQGEATRTKKKQAATVAAYKVLMQL 430


>gi|238567352|ref|XP_002386225.1| hypothetical protein MPER_15614 [Moniliophthora perniciosa FA553]
 gi|215437540|gb|EEB87155.1| hypothetical protein MPER_15614 [Moniliophthora perniciosa FA553]
          Length = 116

 Score = 82.8 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 2/93 (2%)

Query: 3  ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFN 61
            + + +E  IG+ F  + LL +ALTH+S        SYER+EFLGD +L ++++  L+ 
Sbjct: 2  PEQVNYVETIIGHTFKRKLLLVEALTHASHQQDLGTVSYERMEFLGDAVLDMIVNDYLYR 61

Query: 62 HF-DSAKEGELSVRFNSLVSAETCSQVARELDL 93
                  G + +R  ++V+    + +  +  L
Sbjct: 62 APGKEYSPGHIYLRKVAVVNGHILAFICLKASL 94


>gi|134077181|emb|CAK45522.1| unnamed protein product [Aspergillus niger]
          Length = 371

 Score = 82.8 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/260 (17%), Positives = 82/260 (31%), Gaps = 45/260 (17%)

Query: 2   SALRYSTLEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
            + + + L  R+ Y  +   L  L ++L  +S   + + + E L  LG  +L    S  L
Sbjct: 81  ESAKLAALHARL-YLPSRLPLETLARSLVDASADPNPKFNNESLATLGHDLLTHYTSEYL 139

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELD-----------------------LASF 96
              +       +     + V  +T + +ARE                             
Sbjct: 140 ICTYPRLPLTVIFAAMYAYVGPKTLAAMAREWGVEPHEDQTHWRKSITSSVVYDNEFGDP 199

Query: 97  IRVSSDLRKDVCSFMTSIQADVVE--------SLIAALYLDGGIEVAGTFVDKYWKQRAL 148
           ++   D  +     + + Q    E        +++ A+YL  G   A  F ++++  R L
Sbjct: 200 VKGPKDPSEQSKQDVQNTQGVTAEQANATFVRAVMGAIYLHAGRPAAKRFFEQHFLSRHL 259

Query: 149 KSGKFR------RDAKTELQEWAHAKFGVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPA 201
                       RD    L      +    P  ++   +G     P F V +        
Sbjct: 260 NISDLFNFSQPARD----LARLCARENFEQPVARIISETGRKSRHPVFVVGIYSGQDKLG 315

Query: 202 QGMDCSKRAAEQVAAAEVLK 221
           +G   S   A   AA   LK
Sbjct: 316 EGAGASLLEARSRAAVAALK 335


>gi|56418259|gb|AAV91073.1| RNase III [Grouper iridovirus]
          Length = 375

 Score = 82.4 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 79/225 (35%), Gaps = 24/225 (10%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG 69
           EK + +    R L  K  T  S+      +YE LE +GD + G        N F      
Sbjct: 15  EKYMPFVLRRRDLWAKVFTPKSV--DPVNNYEALEIVGDGLAGCFFPIYFINRFPQLNSA 72

Query: 70  E----LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           E    ++    +  S ++ + +A  L     ++  +D      S    +  DV E+ + A
Sbjct: 73  EGVKLVARLKINYASRKSFAAIAGSLGFWQHVKKPTDTVITPTS-KEILLEDVFEAFLGA 131

Query: 126 LY--LDG-------GIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWAHAKFGVTPEY 175
           +   +D        G+ V   F+   + +  +        DAKT L+E    K     + 
Sbjct: 132 ISTAVDHHFGIPALGVAVVYDFLKAVFDKIDISLNYVDLFDAKTRLKELIDVKKSELGD- 190

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            + +  G +    F     +            K+  E+ AAA  L
Sbjct: 191 -LRYVHGNNITQIF-----LGERLVGSATGPIKKDREKDAAARAL 229


>gi|58268964|ref|XP_571638.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134112802|ref|XP_774944.1| hypothetical protein CNBF1090 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50257592|gb|EAL20297.1| hypothetical protein CNBF1090 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57227873|gb|AAW44331.1| expressed protein [Cryptococcus neoformans var. neoformans JEC21]
          Length = 418

 Score = 82.4 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 54/268 (20%), Positives = 95/268 (35%), Gaps = 70/268 (26%)

Query: 19  NRSLLEKALTHSSISHSYQE-----------SYERLEFLGDRILGLLISTLLFNHFDSAK 67
           +R LL +  TH+S   + ++             E+LE +GD +LG +++ LL + + +  
Sbjct: 155 DRELLRQVFTHTSYVGARKQSALFDKEAFHHDNEKLEHVGDALLGCIVTCLLHDLYPNLN 214

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL- 126
            G  +      V  +T SQ++R   +   +    +   ++    T   A++ E+ +A L 
Sbjct: 215 PGNATEMKAICVCNQTLSQLSRRYKMPERLITDVNA-TEILKNGTKTTANIFEAYVAGLH 273

Query: 127 --YL--------DGG--------------------IEVAGTFVDKYWKQR--------AL 148
             YL        DGG                     E    +V  Y K+         A+
Sbjct: 274 YSYLKHGNTKDVDGGDGPKTHGQGLEHLQGWLRPLFEPIAEWVLGYMKKEQERLEAETAV 333

Query: 149 KSGKFRRD---------AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---S 196
           K+G    D          K  L E   ++    P Y      G D    +  +V      
Sbjct: 334 KAGLMDTDLDDLANGASGK--LNELFISRGAGMPVY-TYEPRGVD---MWKAIVIARNRD 387

Query: 197 GLAP-AQGMDCSKRAAEQVAAAEVLKRE 223
           G     +     K+ A  VAA ++L + 
Sbjct: 388 GKEWQGEATRTKKKQAATVAAYKILMQL 415


>gi|330982803|gb|EGH80906.1| ribonuclease III [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 77

 Score = 82.4 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-APAQGMDCSKRAAEQ 213
           +D KT LQE+  ++    P Y+V    G  H   F V  EI+ L   ++G   S+R AEQ
Sbjct: 1   KDPKTRLQEFLQSRACELPRYEVVDIQGEPHCRTFFVECEINLLNEKSRGQGVSRRIAEQ 60


>gi|145523894|ref|XP_001447780.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124415302|emb|CAK80383.1| unnamed protein product [Paramecium tetraurelia]
          Length = 357

 Score = 82.4 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 94/237 (39%), Gaps = 33/237 (13%)

Query: 15  YAFANRSLLEKALTHSSISHSYQE---------SYERLEFLGDRILGLLISTLLFNH-FD 64
           ++F N + L +ALT+      YQ          + E    +G  IL    S  L    + 
Sbjct: 48  FSFQNTNTLAQALTNKIHELEYQSKKGTKYPFGNNEDFVGIGQMILEFFFSDYLIQRGYP 107

Query: 65  SA-----KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           +      K  +L +    L+S    + +A    + + ++V + +          I A+ +
Sbjct: 108 NKETQIKKSSDLVLLRQRLLSERNLADIALSYKIDNIVQVGNQINL---KKNPKILAETL 164

Query: 120 ESLIAALYLDGGI------EVAGTFVDKYWKQ-RALKSGKFRRDAKTELQEWAHAKFGVT 172
           +S+IAA Y D G       EV    + +   + +A+   + +++ K+   E+ +    + 
Sbjct: 165 KSIIAAQYYDSGYDLDHLREVVQPILKQVLDKGQAVPLVELKQNPKSAFLEFVNGCTNLK 224

Query: 173 PEYKVTFRSGPDHDP------RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           P  KV+     D          + V +E++ L   +    +KR  EQ+   + LKR 
Sbjct: 225 P--KVSVEWKKDSSQNGNPINIYQVQLELNNLLLIKREGVNKRNTEQLVYRDALKRL 279


>gi|196007068|ref|XP_002113400.1| hypothetical protein TRIADDRAFT_57522 [Trichoplax adhaerens]
 gi|190583804|gb|EDV23874.1| hypothetical protein TRIADDRAFT_57522 [Trichoplax adhaerens]
          Length = 213

 Score = 82.4 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 70/162 (43%), Gaps = 14/162 (8%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSI-----SHSYQESYERLEFLGDRILGLLISTL 58
           +    ++KR+GY   N +LL +ALT  S       ++ + + +RL+++G  +    I   
Sbjct: 20  VDIENMQKRLGYHIKNINLLLQALTRQSAIRQGIHYASKSNNQRLQWVGSNMFHSGIVYK 79

Query: 59  LFNHFDS---AKEGELSVRFNSLVSAETC-SQVARELDLASFIRVSSDLRKDVCSFMTSI 114
           L+  + +        L+    ++ S     +++ + + LAS +   SD           I
Sbjct: 80  LYEKYANNSYISTDYLNKVAINITSNMALVAEIGKRIGLASCVFRGSDEEIITSE----I 135

Query: 115 QADVVESLIAALYL-DGGIEVAGTFVDKYWKQRALKSGKFRR 155
            A    +++ ++ L DGG +     ++++WK       +  +
Sbjct: 136 LAHTFLAILGSITLDDGGQKAVHDVIERHWKWFLDNPEESFK 177


>gi|109287979|ref|YP_654673.1| hypothetical protein MIV101R [Invertebrate iridescent virus 3]
 gi|123868010|sp|Q196V9|RNC_IIV3 RecName: Full=Putative ribonuclease 3
 gi|106073602|gb|ABF82131.1| hypothetical protein MIV101R [Aedes taeniorhynchus iridescent
           virus]
          Length = 333

 Score = 82.4 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 82/224 (36%), Gaps = 33/224 (14%)

Query: 22  LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE-----LSVRFN 76
               A T SS ++    +YE  E +GD  +G  I    +  F   +        ++    
Sbjct: 99  YFNMAFT-SSSANELN-NYELFEQMGDSTIGKFIVWSSYEKFPQLRGKPEAVEIVARMKI 156

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL------YLDG 130
           +L S +  SQ+A +L + +FI  + + R         +  DV E+LI         + D 
Sbjct: 157 NLGSKDNLSQIAEDLGMWTFISATEEARH---RLKKKLLEDVFEALIGVTEYIIYEFTDT 213

Query: 131 GI-------EVAGTFVDKYWKQRALKSG-KFRRDAKTEL-----QEWAHAKFGVTPEYKV 177
                    ++  + + K +    LK       D+K  L     Q     K G+ P Y+ 
Sbjct: 214 NYSQPGLAYQLVYSLLLKLFDPYILKIDYNTLVDSKNRLKGVFDQYK--DKLGLQPVYQS 271

Query: 178 TFRSGPDHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVL 220
                 D +  F   V   +G    +G    K+ AE+ A+   +
Sbjct: 272 ERIVKNDKN-VFLSKVYDGNGNFLGEGTAPLKKEAEKKASEVAI 314


>gi|269114857|ref|YP_003302620.1| hypothetical protein MHO_0830 [Mycoplasma hominis]
 gi|268322482|emb|CAX37217.1| Hypothetical protein, putative Ribonuclease III [Mycoplasma hominis
           ATCC 23114]
          Length = 219

 Score = 82.0 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 78/182 (42%), Gaps = 29/182 (15%)

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  E + +   N +VS +T ++   +L  A ++ +  + +++  +   S++AD+ E++I 
Sbjct: 29  NKNESDFTDLKNQIVSNKTLAKKINKLGFAKYLVLGDNDKRNNVANQDSVKADLFEAIIG 88

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD----------AK-----TELQEWAHAKF 169
           A+ +D G ++      K    + L    F +D           K       L+E A    
Sbjct: 89  AIAIDSGWDIKR---LKNIIIKMLDIEHFFKDVDCREKRPDKFKLENAINTLKELAERGE 145

Query: 170 GVTPEYKVTFRSGPDHD--PRFTVVVEIS-------GL--APAQGMDCSKRAAEQVAAAE 218
              P Y+++ +   D++    +     ++       GL     +G   SK+ A+++AA  
Sbjct: 146 CSMPIYQISEKPIIDNNGKQWWHCRCNVNFRNLQWMGLWTKYTEGYGTSKKLAKKMAAYI 205

Query: 219 VL 220
           VL
Sbjct: 206 VL 207


>gi|116205049|ref|XP_001228335.1| hypothetical protein CHGG_10408 [Chaetomium globosum CBS 148.51]
 gi|88176536|gb|EAQ84004.1| hypothetical protein CHGG_10408 [Chaetomium globosum CBS 148.51]
          Length = 1227

 Score = 81.7 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 67/168 (39%), Gaps = 25/168 (14%)

Query: 9    LEKRI---GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            LE R+   G    + SL+  A+T +S +      YER+EFLGD IL    +      +  
Sbjct: 934  LESRLEQTGIT--DLSLIVTAIT-ASAARG-PTDYERIEFLGDSILKFCTTINCSATYLK 989

Query: 66   AKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------SSDLRKDV 107
              EG LS   + +VS     + A +  L  +I                    +     + 
Sbjct: 990  FPEGCLSPLKDKIVSNSRLFRAAVDFGLDRYIIHKAFTLHKWRPTYVEDLIENPPSATET 1049

Query: 108  CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
                T I ADVVE+LI   ++ GGI  A   +  +    A  S ++ R
Sbjct: 1050 RRISTKIIADVVEALIGTAFVSGGISKALACMSLFLPDVAWNSIEYGR 1097



 Score = 77.8 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 3/80 (3%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNHFDSA 66
             LE  +GY F  ++LL +A+TH S +    + S +RLEFLGD IL  ++   LF   D A
Sbjct: 1116 QLESLVGYTFTKKALLVEAMTHPSCNGPGIRASLDRLEFLGDAILDYVVVNKLFAISDPA 1175

Query: 67   K--EGELSVRFNSLVSAETC 84
                  L +   +LV+A+  
Sbjct: 1176 PLENSSLHLLRTALVNADIL 1195


>gi|196229194|ref|ZP_03128059.1| dsRNA-specific ribonuclease [Chthoniobacter flavus Ellin428]
 gi|196226426|gb|EDY20931.1| dsRNA-specific ribonuclease [Chthoniobacter flavus Ellin428]
          Length = 69

 Score = 81.7 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 3/64 (4%)

Query: 9  LEKRIGYAFANRSLLEKALTHSSISHS---YQESYERLEFLGDRILGLLISTLLFNHFDS 65
          LE+RI Y F N  LL +ALTH S+ H    +    +RLEFLGD +L L+ +  LF+ F  
Sbjct: 4  LEQRIKYKFRNSLLLAEALTHPSLGHETQRHHFDNQRLEFLGDAVLQLIFTEYLFDQFPR 63

Query: 66 AKEG 69
           + G
Sbjct: 64 LQRG 67


>gi|171689324|ref|XP_001909602.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944624|emb|CAP70735.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1406

 Score = 81.7 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 6/93 (6%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            LEK IGY F  +SLL +A+TH S +    + S +RLEFLGD IL  L+   LF+  +   
Sbjct: 1080 LEKLIGYTFKKKSLLIEAMTHPSFNVQDTRASLDRLEFLGDAILDYLVVESLFSLREPLT 1139

Query: 68   -----EGELSVRFNSLVSAETCSQVARELDLAS 95
                   +L +   +LV+A+    +  E  +  
Sbjct: 1140 GLPLENSKLHLLRTALVNADILGFLVMEWAIEE 1172



 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/148 (27%), Positives = 55/148 (37%), Gaps = 32/148 (21%)

Query: 21   SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
             L+  A+T S    S    YER+EFLGD IL    +              LS   + +VS
Sbjct: 912  DLVVTAITASGARRSI--DYERIEFLGDSILKFCTTINCSAQCF------LSASKDKIVS 963

Query: 81   AETCSQVARELDLASFIRV-----------------------SSDLRKDVCSFMTSIQAD 117
                 + A +  LA +I                         SSD  K      T   AD
Sbjct: 964  NYRLCKAAIDFGLARYIINTAYTTDKWRPVFVEDYLERTDNPSSDGPKTR-EMSTKTLAD 1022

Query: 118  VVESLIAALYLDGGIEVAGTFVDKYWKQ 145
            VVE+LI A ++ GGI  A   +  +  +
Sbjct: 1023 VVEALIGASHISGGINKALACISLFLPE 1050



 Score = 38.9 bits (90), Expect = 0.48,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 14/101 (13%)

Query: 113  SIQADVVESLIAALYLDGG-IEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHA 167
                DV ESL+ A+++D G +E     +++       +R ++ G      K EL   A  
Sbjct: 1268 KFYGDVFESLMGAVWVDSGDLEECRGLMERIGIMGLMERLVREGVHCLHPKEELGLLAAG 1327

Query: 168  KFGVTPEYKVTF-RSGPDHDPRFTVV-----VEISGLAPAQ 202
            +     EY+V     G               V + G    +
Sbjct: 1328 R---AVEYRVEENEEGQWECAVVWAETGEEVVRVGGARKGE 1365


>gi|289614471|emb|CBI58755.1| unnamed protein product [Sordaria macrospora]
          Length = 1365

 Score = 81.7 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 4/91 (4%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSIS--HSYQESYERLEFLGDRILGLLISTLLFNH 62
            +   LEK +GYAF  +SLL +A+TH S          YERLEFLGD IL +++   L   
Sbjct: 997  QLEPLEKAMGYAFTKKSLLIEAMTHPSCPGLGDNDSCYERLEFLGDAILDVIVVKRLMAE 1056

Query: 63   --FDSAKEGELSVRFNSLVSAETCSQVAREL 91
               +     ++    +S+V+A+  + +A E 
Sbjct: 1057 TGPNELAHNDMHEYLSSVVTADIMAFLAMEW 1087



 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/159 (28%), Positives = 64/159 (40%), Gaps = 22/159 (13%)

Query: 1   MSALRYSTLEKRIG-YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
           MS +    +  R+G     N  L+  ALT  SI      +YERLEFLGD IL        
Sbjct: 804 MSLVAADLMYNRLGCLELDNLLLVTTALT--SIGSRAPTNYERLEFLGDTILKFCACLTA 861

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT------- 112
              F +  E  LS   +SLV+     + + +  L  +I  S   +K    F+        
Sbjct: 862 SALFPNHHERLLSQWKDSLVNNVRLCRASIDFGLDEYIIHSMASKKWRPKFVENYLDDSK 921

Query: 113 ------------SIQADVVESLIAALYLDGGIEVAGTFV 139
                        + ADV+ESLI A Y+ G +  A   +
Sbjct: 922 SPKSAETREMSSKMVADVIESLIGATYMCGDMSKALECI 960


>gi|312221294|emb|CBY01234.1| hypothetical protein [Leptosphaeria maculans]
          Length = 207

 Score = 81.7 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 54/144 (37%), Gaps = 10/144 (6%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ------ESYERLEFLGDRILGLLISTL 58
           + S  E+ I Y   ++  L  AL  S    S+            L  LGD  +  ++   
Sbjct: 60  KVSQCEQIITYTAKSKYHLLNALNASGCLISHNNTTYSIPHNSGLAVLGDARMAGVLCKW 119

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
            +     A +G+ +   +        +Q+ RE  L   I +S             + A +
Sbjct: 120 WWGKSPKAHKGQWTQIRHDKCGNGFLAQLGREKGLHECIILSPGAIVV----SDKMVATL 175

Query: 119 VESLIAALYLDGGIEVAGTFVDKY 142
           +E+L  A+YLDGG E     + K 
Sbjct: 176 IEALCGAIYLDGGEEELERVMRKL 199


>gi|121807816|sp|Q2VF18|DCL2_CRYPA RecName: Full=Dicer-like protein 2; Includes: RecName:
            Full=Endoribonuclease DCL-2; Includes: RecName:
            Full=ATP-dependent helicase DCL-2
 gi|77632776|gb|ABB00357.1| dicer-like protein 2 [Cryphonectria parasitica]
          Length = 1451

 Score = 81.3 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 3    ALRYSTLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFN 61
                  LE+ I Y+F  ++LL +A+TH S +       Y+RLEF+GD IL  +I   +F 
Sbjct: 1150 PADLQLLEQLIEYSFCEKALLVEAVTHPSYNVSGTVACYDRLEFIGDAILDYIIVEEVFA 1209

Query: 62   HFDSAKEGELSVRFNSLVSAETC 84
               + +  ++ +   +LV+A+  
Sbjct: 1210 LEPALENWQMHLLRTALVNADIL 1232



 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 65/159 (40%), Gaps = 20/159 (12%)

Query: 16   AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
              +N S+L +A+   S      E+YER+EFLGD IL   I+  L        EG LS+  
Sbjct: 980  RISNVSMLVEAICAKSA--RTPENYERIEFLGDSILKTCITVNLAATKLHLPEGILSLMK 1037

Query: 76   NSLVSAETCSQVARELDLASFI----RVSSD--------------LRKDVCSFMTSIQAD 117
            + LVS     + A + +L  F+     V+                  +          AD
Sbjct: 1038 DRLVSNARLCRAACDAELDQFLVTQQLVTKGWQPPYMSDLAKQDQEPESKRILSPKTLAD 1097

Query: 118  VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD 156
            VVE+LI   ++DGG+  A   +  +  +   +     RD
Sbjct: 1098 VVEALIGVSFVDGGLPKALECIRLFIPESQPRPFSEVRD 1136



 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 18/124 (14%)

Query: 113  SIQADVVESLIAALYLDG--GIEVAGTFVDK----YWKQRALKSGKFRRDAKTELQEWAH 166
               +D  E+L+ A+++D   G +    FV +     + +R L+        K EL   A 
Sbjct: 1333 KFYSDFFEALVGAIWVDAGPGFDACRAFVARSGVLPYLKRLLRDQVHVLHPKEELGRLA- 1391

Query: 167  AKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDC-----SK-RAAEQVAAAEV 219
                   EY V      D D   +   V + G        C     S+ +AA Q  A E+
Sbjct: 1392 --GRERVEYVVKETLKDDGDGKEWACEVRVGGRYVTDVTGCLFKEESRVKAATQ--ACEI 1447

Query: 220  LKRE 223
            LKR+
Sbjct: 1448 LKRK 1451


>gi|47225094|emb|CAF98721.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1041

 Score = 81.3 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 44/88 (50%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
               ERLEFLGD ++  L S  L+  F S +EG L+    ++V  +  + +A++L+L  F+
Sbjct: 920  NHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 979

Query: 98   RVSSDLRKDVCSFMTSIQADVVESLIAA 125
              +        S +    A+  E+LI  
Sbjct: 980  LYAHGPDLCRESDLRHAMANCFEALIGE 1007


>gi|67925688|ref|ZP_00519002.1| Ribonuclease III [Crocosphaera watsonii WH 8501]
 gi|67852471|gb|EAM47916.1| Ribonuclease III [Crocosphaera watsonii WH 8501]
          Length = 328

 Score = 81.3 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 72/155 (46%), Gaps = 7/155 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSIS---HSYQESYERLEFLGDRILGLLISTLLFNHF 63
           S ++++I + F N  LL  +L+  S     +      +RLE LG+ +L L+I   L++HF
Sbjct: 6   SLVQEKISFNFKNTDLLFLSLSDPSYGKQINQPDSDNQRLESLGENLLALIIIDYLYHHF 65

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLAS-FIRVSSDLRKDVCSFMTSI-QADVVES 121
                 +++   + L+  E  + +   L L   +  +  +  +      T+      +++
Sbjct: 66  PYLTLSKMTALQDKLLDKEKLTNLWFSLGLGESYPFLDVNQERHRLRVKTTNPFEKSLKA 125

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD 156
           L+AA+++D G   +  + +K+     L   K ++D
Sbjct: 126 LVAAIHVDRGFSHSYNWFNKHLIAPLL--AKHQKD 158



 Score = 37.0 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 53/138 (38%), Gaps = 17/138 (12%)

Query: 33  SHSYQESYER------LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQ 86
           +   +++ ER      L  LG  +L  +    L+      K G+L     +L S +  ++
Sbjct: 153 AKHQKDNLERVNPDKQLNILGSTLLKAVTFDYLYTLLPYVKPGQLKKLSKTLTSKKQQTE 212

Query: 87  VARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV---DKYW 143
             ++        V+++  + + +    I      SL  A+++    E   T      K++
Sbjct: 213 YLKK--------VTTEDWEIITTEQDKISKKSFPSLFGAMFIHFDHENPKTRYRNSKKWF 264

Query: 144 KQRALKSGKFRRDAKTEL 161
           K+  +   +   DA + L
Sbjct: 265 KENFIDEDEVLYDAISSL 282


>gi|113476425|ref|YP_722486.1| ribonuclease III [Trichodesmium erythraeum IMS101]
 gi|110167473|gb|ABG52013.1| ribonuclease III [Trichodesmium erythraeum IMS101]
          Length = 209

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 13/147 (8%)

Query: 16  AFANRSLLEKALTHSSISHSY------QESYERLEF-----LGDRILGLLISTLLFNHFD 64
            F +  LLE ALTH +  +        Q+  + LE      LG  +   +IS  L  +F 
Sbjct: 17  KFKHPELLEIALTHPNHIYDRTNIIRPQQKQQVLEHQGLANLGYVVFSRVISKYLSKNFS 76

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           S  +  L +  + LVS +  S+ A++L L  F ++    +    S    + A + E+LI 
Sbjct: 77  SLGKATLIIIESDLVSIKMLSEFAKDLKLRQFSQLGKSYKWKHKSEKNKMLAQMFEALIG 136

Query: 125 ALYL--DGGIEVAGTFVDKYWKQRALK 149
            +YL  D  +E    ++ +++   A+ 
Sbjct: 137 VIYLEFDKDLERTSHWLVEHFIAEAVN 163


>gi|82268346|sp|Q4SS66|TRBP2_TETNG RecName: Full=RISC-loading complex subunit tarbp2
 gi|47222849|emb|CAF96516.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 345

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE    K    PEY VT  SGP H   FT+   +       G   SK+ A++ A
Sbjct: 140 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGSGTSKKLAKRNA 198

Query: 216 AAEVLKR 222
           AA++L R
Sbjct: 199 AAKMLSR 205



 Score = 45.8 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             + LQE+   + G TP Y +    G  H P FT  V + G     G   S
Sbjct: 31  PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVAV-GEINCTGQGPS 79


>gi|312380139|gb|EFR26223.1| hypothetical protein AND_07871 [Anopheles darlingi]
          Length = 328

 Score = 80.9 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 80/237 (33%), Gaps = 35/237 (14%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQE---------------SYERLEFLGDRILGLLI 55
           KR+   F   S+L++A TH S     ++                   L   GD ++   +
Sbjct: 68  KRLQENFE-PSVLQQAFTHQSFIEQEKQKQAAVGIDEPVLGVHDNRELIAQGDSLIQQYV 126

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
              L        +  +     +L S    + ++  L     I +++D   D      ++ 
Sbjct: 127 EAFLLKALPRLPQQFVGSIQKALTSEAQLAHISAHLGTKD-IILAADFPID-----DTLL 180

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR----DAKTELQEWAHAKFGV 171
           A  +++++AAL    G E    FV  +      +   F      DA   L+E+   +   
Sbjct: 181 ASTLKAIVAALQRSSGDERCFLFVRDFLCTTLNQRDPFEYLHITDALGTLREYCQERKLA 240

Query: 172 TPEYKVTFRSG-----PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            PE ++    G       H     V +         G    +  A Q AA + L++ 
Sbjct: 241 EPEPRLIGTVGKNTLLAAHA----VGIYCDQKLLGTGYGEDQTIASQEAARDCLRKL 293


>gi|289526478|pdb|2KHX|A Chain A, Drosha Double-Stranded Rna Binding Motif
          Length = 85

 Score = 80.9 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 5/73 (6%)

Query: 155 RDAKTELQEWA-----HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            D K++LQ+         K    P YK     GP H   +TV V   G     G   S +
Sbjct: 1   NDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQ 60

Query: 210 AAEQVAAAEVLKR 222
            AE  AA + L++
Sbjct: 61  QAEMGAAMDALEK 73


>gi|125570782|gb|EAZ12297.1| hypothetical protein OsJ_02188 [Oryza sativa Japonica Group]
          Length = 234

 Score = 80.9 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 63/142 (44%), Gaps = 17/142 (11%)

Query: 40  YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAR---------- 89
           ++RLEFLGD  LGL  +T+ +       +G+L+V  ++ VS +  ++VA           
Sbjct: 39  HQRLEFLGDAALGLAFATIFYRDDPGLDQGDLTVLRSANVSTQKLARVAVRRRLYPLLRR 98

Query: 90  ------ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV-AGTFVDKY 142
                 + +++ F +               + AD+VE+++ A+YLD  +++     V K 
Sbjct: 99  YNCAPQDHEVSRFTKSVEGPYSGDPIEGPRVLADIVEAIVGAVYLDSKLDLEVLQKVAKL 158

Query: 143 WKQRALKSGKFRRDAKTELQEW 164
             +  +       D ++ L E 
Sbjct: 159 LCEPIITKKALLEDPESMLNEL 180


>gi|229891738|sp|Q5BJ52|TRBP2_XENTR RecName: Full=RISC-loading complex subunit tarbp2
          Length = 351

 Score = 80.9 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
           +  L + +   +    LQE    K    PEY VT  SGP H   FT+   +       G 
Sbjct: 139 KPPLSAQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFLEIGS 197

Query: 205 DCSKRAAEQVAAAEVL 220
             SK+ A++ AAA++L
Sbjct: 198 GTSKKLAKRNAAAKML 213



 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             + LQE+   + G TP Y +    G  H P FT  V +  +    G   S
Sbjct: 30  PISLLQEYG-TRVGKTPVYDLLKAEGQAHQPNFTFRVSVGDIN-CTGQGPS 78


>gi|229891737|sp|Q6GPZ1|TRBP2_XENLA RecName: Full=RISC-loading complex subunit tarbp2
          Length = 351

 Score = 80.9 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
           +  L + +   +    LQE    K    PEY VT  SGP H   FT+   +       G 
Sbjct: 139 KPPLSAQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFLEIGS 197

Query: 205 DCSKRAAEQVAAAEVL 220
             SK+ A++ AAA++L
Sbjct: 198 GTSKKLAKRNAAAKML 213



 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             + LQE+   + G TP Y +    G  H P FT  V +  +    G   S
Sbjct: 30  PISLLQEYG-TRVGKTPVYDLLKAEGQAHQPNFTFRVSVGDIN-CTGQGPS 78


>gi|71895927|ref|NP_001025646.1| RISC-loading complex subunit tarbp2 [Xenopus (Silurana) tropicalis]
 gi|60550973|gb|AAH91619.1| TAR (HIV-1) RNA binding protein 2 [Xenopus (Silurana) tropicalis]
          Length = 331

 Score = 80.9 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
           +  L + +   +    LQE    K    PEY VT  SGP H   FT+   +       G 
Sbjct: 119 KPPLSAQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFLEIGS 177

Query: 205 DCSKRAAEQVAAAEVL 220
             SK+ A++ AAA++L
Sbjct: 178 GTSKKLAKRNAAAKML 193



 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             + LQE+   + G TP Y +    G  H P FT  V +  +    G   S
Sbjct: 10  PISLLQEYG-TRVGKTPVYDLLKAEGQAHQPNFTFRVSVGDIN-CTGQGPS 58


>gi|148232429|ref|NP_001085574.1| RISC-loading complex subunit tarbp2 [Xenopus laevis]
 gi|49115615|gb|AAH72963.1| MGC82499 protein [Xenopus laevis]
          Length = 331

 Score = 80.9 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
           +  L + +   +    LQE    K    PEY VT  SGP H   FT+   +       G 
Sbjct: 119 KPPLSAQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFLEIGS 177

Query: 205 DCSKRAAEQVAAAEVL 220
             SK+ A++ AAA++L
Sbjct: 178 GTSKKLAKRNAAAKML 193



 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             + LQE+   + G TP Y +    G  H P FT  V +  +    G   S
Sbjct: 10  PISLLQEYG-TRVGKTPVYDLLKAEGQAHQPNFTFRVSVGDIN-CTGQGPS 58


>gi|317418804|emb|CBN80842.1| RISC-loading complex subunit tarbp2 [Dicentrarchus labrax]
          Length = 345

 Score = 80.9 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE    K    PEY VT  SGP H   FT+   +       G   SK+ A++ A
Sbjct: 140 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFVEIGSGTSKKLAKRNA 198

Query: 216 AAEVLKR 222
           AA++L R
Sbjct: 199 AAKMLSR 205



 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             + LQE+   + G TP Y +    G  H P FT  V + G     G   S
Sbjct: 31  PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVSV-GEISCTGQGPS 79


>gi|90704799|dbj|BAE92294.1| similarity to ribonuclease III [Cryptomeria japonica]
          Length = 191

 Score = 80.5 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 10/148 (6%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              L+ +I Y F +++LL  A+TH+S S    ++   L  LG  I+   IS     +  +
Sbjct: 39  IKALQTKIRYQFKDQTLLILAITHASYSF---DNNGALNVLGYNIIQAAISLHYVLNNSA 95

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
              G+L  + + L +    S+ A +L L   I+V+      +     SI      +L  A
Sbjct: 96  IGSGDLHSKISELSNCTVLSKDAFDLQLHDLIKVAPK----INPKKQSILCGCYRALFGA 151

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKF 153
           +  D  ++VA    +K+  +R L +   
Sbjct: 152 IGADANLDVAK---EKFLIRRKLNAASI 176


>gi|41053389|ref|NP_956291.1| RISC-loading complex subunit tarbp2 [Danio rerio]
 gi|82240186|sp|Q7SXR1|TRBP2_DANRE RecName: Full=RISC-loading complex subunit tarbp2
 gi|33311802|gb|AAH55390.1| TAR (HIV) RNA binding protein 2 [Danio rerio]
          Length = 346

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE    K    PEY VT  SGP H   FT+   +       G   SK+ A++ A
Sbjct: 139 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFVEIGSGTSKKLAKRNA 197

Query: 216 AAEVLKR 222
           AA++L R
Sbjct: 198 AAKMLSR 204



 Score = 46.2 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             + LQE+   + G TP Y +    G  H P FT  V +  +    G   S
Sbjct: 31  PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVSVGDIN-CTGHGPS 79


>gi|311255463|ref|XP_003126242.1| PREDICTED: RISC-loading complex subunit TARBP2-like [Sus scrofa]
          Length = 366

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
           Q  +   +   +    LQE    K    PEY VT  SGP H   FT+   +       G 
Sbjct: 148 QPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGS 206

Query: 205 DCSKRAAEQVAAAEVLKR 222
             SK+ A++ AAA++L R
Sbjct: 207 GTSKKLAKRNAAAKMLLR 224



 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             + LQE+   + G TP Y +    G  H P FT  V +       G   S
Sbjct: 31  PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVTVGD-TSCTGQGPS 79


>gi|296211842|ref|XP_002752582.1| PREDICTED: RISC-loading complex subunit TARBP2-like isoform 2
           [Callithrix jacchus]
 gi|296211844|ref|XP_002752583.1| PREDICTED: RISC-loading complex subunit TARBP2-like isoform 3
           [Callithrix jacchus]
          Length = 345

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
           Q  +   +   +    LQE    K    PEY VT  SGP H   FT+   +       G 
Sbjct: 127 QPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGS 185

Query: 205 DCSKRAAEQVAAAEVLKR 222
             SK+ A++ AAA++L R
Sbjct: 186 GTSKKLAKRNAAAKMLLR 203



 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             + LQE+   + G TP Y +    G  H P FT  V +       G   S
Sbjct: 10  PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVTVGD-TSCTGQGPS 58


>gi|296211840|ref|XP_002752581.1| PREDICTED: RISC-loading complex subunit TARBP2-like isoform 1
           [Callithrix jacchus]
          Length = 366

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
           Q  +   +   +    LQE    K    PEY VT  SGP H   FT+   +       G 
Sbjct: 148 QPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGS 206

Query: 205 DCSKRAAEQVAAAEVLKR 222
             SK+ A++ AAA++L R
Sbjct: 207 GTSKKLAKRNAAAKMLLR 224



 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             + LQE+   + G TP Y +    G  H P FT  V +       G   S
Sbjct: 31  PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVTVGD-TSCTGQGPS 79


>gi|149714845|ref|XP_001504584.1| PREDICTED: similar to TAR RNA binding protein 2 isoform 1 [Equus
           caballus]
          Length = 366

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
           Q  +   +   +    LQE    K    PEY VT  SGP H   FT+   +       G 
Sbjct: 148 QPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGS 206

Query: 205 DCSKRAAEQVAAAEVLKR 222
             SK+ A++ AAA++L R
Sbjct: 207 GTSKKLAKRNAAAKMLLR 224



 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             + LQE+   + G TP Y +    G  H P FT  V +       G   S
Sbjct: 31  PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVTVGD-TSCTGQGPS 79


>gi|149714848|ref|XP_001504588.1| PREDICTED: similar to TAR RNA binding protein 2 isoform 3 [Equus
           caballus]
 gi|149714851|ref|XP_001504586.1| PREDICTED: similar to TAR RNA binding protein 2 isoform 2 [Equus
           caballus]
          Length = 345

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
           Q  +   +   +    LQE    K    PEY VT  SGP H   FT+   +       G 
Sbjct: 127 QPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGS 185

Query: 205 DCSKRAAEQVAAAEVLKR 222
             SK+ A++ AAA++L R
Sbjct: 186 GTSKKLAKRNAAAKMLLR 203



 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             + LQE+   + G TP Y +    G  H P FT  V +       G   S
Sbjct: 10  PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVTVGD-TSCTGQGPS 58


>gi|119617124|gb|EAW96718.1| Tar (HIV-1) RNA binding protein 2, isoform CRA_b [Homo sapiens]
 gi|119617125|gb|EAW96719.1| Tar (HIV-1) RNA binding protein 2, isoform CRA_b [Homo sapiens]
          Length = 222

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
           Q  +   +   +    LQE    K    PEY VT  SGP H   FT+   +       G 
Sbjct: 4   QPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGS 62

Query: 205 DCSKRAAEQVAAAEVLKR 222
             SK+ A++ AAA++L R
Sbjct: 63  GTSKKLAKRNAAAKMLLR 80


>gi|113912024|gb|AAI22654.1| TAR (HIV-1) RNA binding protein 2 [Bos taurus]
          Length = 319

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
           Q  +   +   +    LQE    K    PEY VT  SGP H   FT+   +       G 
Sbjct: 148 QPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGS 206

Query: 205 DCSKRAAEQVAAAEVLKR 222
             SK+ A++ AAA++L R
Sbjct: 207 GTSKKLAKRNAAAKMLLR 224



 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             + LQE+   + G TP Y +    G  H P FT  V +       G   S
Sbjct: 31  PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVTVGD-TSCTGQGPS 79


>gi|19743838|ref|NP_004169.3| RISC-loading complex subunit TARBP2 isoform b [Homo sapiens]
 gi|85068512|ref|NP_599151.2| RISC-loading complex subunit TARBP2 isoform b [Homo sapiens]
 gi|332839227|ref|XP_003313704.1| PREDICTED: RISC-loading complex subunit TARBP2 isoform 2 [Pan
           troglodytes]
 gi|332839229|ref|XP_003313705.1| PREDICTED: RISC-loading complex subunit TARBP2 isoform 3 [Pan
           troglodytes]
 gi|119617123|gb|EAW96717.1| Tar (HIV-1) RNA binding protein 2, isoform CRA_a [Homo sapiens]
          Length = 345

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
           Q  +   +   +    LQE    K    PEY VT  SGP H   FT+   +       G 
Sbjct: 127 QPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGS 185

Query: 205 DCSKRAAEQVAAAEVLKR 222
             SK+ A++ AAA++L R
Sbjct: 186 GTSKKLAKRNAAAKMLLR 203



 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             + LQE+   + G TP Y +    G  H P FT  V +       G   S
Sbjct: 10  PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVTVGD-TSCTGQGPS 58


>gi|164448622|ref|NP_001069146.2| RISC-loading complex subunit TARBP2 [Bos taurus]
 gi|229891741|sp|Q0IIG6|TRBP2_BOVIN RecName: Full=RISC-loading complex subunit TARBP2
 gi|296487914|gb|DAA30027.1| RISC-loading complex subunit TARBP2 [Bos taurus]
          Length = 366

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
           Q  +   +   +    LQE    K    PEY VT  SGP H   FT+   +       G 
Sbjct: 148 QPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGS 206

Query: 205 DCSKRAAEQVAAAEVLKR 222
             SK+ A++ AAA++L R
Sbjct: 207 GTSKKLAKRNAAAKMLLR 224



 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             + LQE+   + G TP Y +    G  H P FT  V +       G   S
Sbjct: 31  PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVTVGD-TSCTGQGPS 79


>gi|30585201|gb|AAP36873.1| Homo sapiens TAR (HIV) RNA binding protein 2 [synthetic construct]
 gi|60653021|gb|AAX29205.1| TAR [synthetic construct]
          Length = 367

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
           Q  +   +   +    LQE    K    PEY VT  SGP H   FT+   +       G 
Sbjct: 148 QPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGS 206

Query: 205 DCSKRAAEQVAAAEVLKR 222
             SK+ A++ AAA++L R
Sbjct: 207 GTSKKLAKRNAAAKMLLR 224



 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             + LQE+   + G TP Y +    G  H P FT  V +       G   S
Sbjct: 31  PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVTVGD-TSCTGQGPS 79


>gi|339909|gb|AAA36765.1| TAR RNA binding protein [Homo sapiens]
          Length = 345

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
           Q  +   +   +    LQE    K    PEY VT  SGP H   FT+   +       G 
Sbjct: 127 QPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGS 185

Query: 205 DCSKRAAEQVAAAEVLKR 222
             SK+ A++ AAA++L R
Sbjct: 186 GTSKKLAKRNAAAKMLLR 203



 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             + LQE+   + G TP Y +    G  H P FT  V +       G   S
Sbjct: 10  PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVTVGD-TSCTGQGPS 58


>gi|7412848|gb|AAB50581.2| TAR RNA binding protein 2 [Homo sapiens]
          Length = 366

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
           Q  +   +   +    LQE    K    PEY VT  SGP H   FT+   +       G 
Sbjct: 148 QPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGS 206

Query: 205 DCSKRAAEQVAAAEVLKR 222
             SK+ A++ AAA++L R
Sbjct: 207 GTSKKLAKRNAAAKMLLR 224



 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             + LQE+   + G TP Y +    G  H P FT  V +       G   S
Sbjct: 31  PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVTVGD-TSCTGQGPS 79


>gi|19743840|ref|NP_599150.1| RISC-loading complex subunit TARBP2 isoform a [Homo sapiens]
 gi|332839225|ref|XP_003313703.1| PREDICTED: RISC-loading complex subunit TARBP2 isoform 1 [Pan
           troglodytes]
 gi|209572714|sp|Q15633|TRBP2_HUMAN RecName: Full=RISC-loading complex subunit TARBP2; AltName:
           Full=TAR RNA-binding protein 2; AltName:
           Full=Trans-activation-responsive RNA-binding protein
 gi|13543405|gb|AAH05860.1| TAR (HIV-1) RNA binding protein 2 [Homo sapiens]
 gi|30583119|gb|AAP35804.1| TAR (HIV) RNA binding protein 2 [Homo sapiens]
 gi|60656097|gb|AAX32612.1| TAR RNA binding protein 2 [synthetic construct]
 gi|119617126|gb|EAW96720.1| Tar (HIV-1) RNA binding protein 2, isoform CRA_c [Homo sapiens]
 gi|123993747|gb|ABM84475.1| Tar (HIV-1) RNA binding protein 2 [synthetic construct]
 gi|123994511|gb|ABM84857.1| Tar (HIV-1) RNA binding protein 2 [synthetic construct]
 gi|208967915|dbj|BAG73796.1| TAR (HIV-1) RNA binding protein 2 [synthetic construct]
          Length = 366

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
           Q  +   +   +    LQE    K    PEY VT  SGP H   FT+   +       G 
Sbjct: 148 QPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGS 206

Query: 205 DCSKRAAEQVAAAEVLKR 222
             SK+ A++ AAA++L R
Sbjct: 207 GTSKKLAKRNAAAKMLLR 224



 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             + LQE+   + G TP Y +    G  H P FT  V +       G   S
Sbjct: 31  PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVTVGD-TSCTGQGPS 79


>gi|107904|pir||A38430 trans-activation-responsive RNA-binding protein - human  (fragment)
          Length = 363

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
           Q  +   +   +    LQE    K    PEY VT  SGP H   FT+   +       G 
Sbjct: 145 QPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGS 203

Query: 205 DCSKRAAEQVAAAEVLKR 222
             SK+ A++ AAA++L R
Sbjct: 204 GTSKKLAKRNAAAKMLLR 221



 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 2/69 (2%)

Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
           + K    + + +    +   + LQE+   + G TP Y +    G  H P FT  V +   
Sbjct: 10  IQKAPCPKQMLAANPGKTPISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVTVGD- 67

Query: 199 APAQGMDCS 207
               G   S
Sbjct: 68  TSCTGQGPS 76


>gi|195995859|ref|XP_002107798.1| hypothetical protein TRIADDRAFT_51673 [Trichoplax adhaerens]
 gi|190588574|gb|EDV28596.1| hypothetical protein TRIADDRAFT_51673 [Trichoplax adhaerens]
          Length = 1418

 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/201 (24%), Positives = 73/201 (36%), Gaps = 46/201 (22%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH- 62
             +    E+ +GY F N   L  A THSS       +YE+LEF+GD IL  L+   LF   
Sbjct: 1220 EKLHKFEENLGYKFINIDYLILAFTHSSSEFGDSFNYEKLEFVGDSILNYLVIKYLFLAT 1279

Query: 63   ----------FDSAKEGELSVRFNSLVSAETC---SQVARELDLA------SFIRVSSDL 103
                      +  A   E+    +   +       S   +E+ L         +   S  
Sbjct: 1280 DQDITRSKFFYGIAISNEVYGLLSYAYNFHHLFYQSPFVKEMILGFEKKTADLLEGGSIP 1339

Query: 104  RKDVCS------FMTSI---------QADVVESLIAALYLDGGIEVAGTF-----VDKYW 143
            R           F  SI          ADV ESL AA+Y D G  ++  +     + K +
Sbjct: 1340 RNGNKHDWVYTIFSKSIDDDFSIPKELADVFESLAAAIYFDSGQNLSTVWNIYSNLLKPF 1399

Query: 144  KQRALKSGKFRRDAKTELQEW 164
              + LK    +++     QE 
Sbjct: 1400 LDKLLKDN--QKNF----QEL 1414


>gi|238497846|ref|XP_002380158.1| RNA helicase/RNAse III, putative [Aspergillus flavus NRRL3357]
 gi|220693432|gb|EED49777.1| RNA helicase/RNAse III, putative [Aspergillus flavus NRRL3357]
          Length = 1339

 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 56/135 (41%), Gaps = 17/135 (12%)

Query: 17   FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
            FA+   +  A+   S       +Y+R EFLGD IL  ++S  LF    +  EG L+    
Sbjct: 925  FADIQHVITAIMAPSA--QGVTNYQRYEFLGDSILKYIVSCQLFFQNLNWPEGFLTEGRT 982

Query: 77   SLVSAETCSQVARELDLASFIRVSS---------------DLRKDVCSFMTSIQADVVES 121
            ++V     ++ A +  L SFI   +                           + ADV+E+
Sbjct: 983  TIVQNPRLTRAALDAGLDSFIITKALTPRRWIAPLISTRVGAAPVKRQMSAKVLADVIEA 1042

Query: 122  LIAALYLDGGIEVAG 136
            LI A YLDGG   A 
Sbjct: 1043 LIGAAYLDGGHSKAQ 1057



 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 81/245 (33%), Gaps = 74/245 (30%)

Query: 44   EFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL------------ 91
            EFLGD IL ++I  ++F + +    G++++  +++V+A        E             
Sbjct: 1093 EFLGDAILDMVIVPIIFQYSNKISPGDMTLIKHAVVNANLLGFFCMEFSIEQDKTKVEKT 1152

Query: 92   --------------DLASFIRVSSDLRKD--------VCSFMTSIQ-------------- 115
                          +L  F+R +S   +                I               
Sbjct: 1153 PDGRFAVKSETQHVELWRFMRFNSLDLQTSRDAALDRHRRLRNKILTSLYHGPSYPWQSL 1212

Query: 116  ---------ADVVESLIAALYLDGG--IEVAGTFVDKY----WKQRALKSGKFRRDAKTE 160
                     +D+VES++ A+Y+D G  +     F+++     + +R L  G      +  
Sbjct: 1213 SQLYADKFFSDIVESVLGAIYVDSGGDLSACERFLEQIGLLSYVRRVLLDGINVTHPRNI 1272

Query: 161  LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG--LAPAQG--MDCSKRAAEQVAA 216
             Q  +          +V+   G      +   V ++   +   +G         AE  AA
Sbjct: 1273 AQRLSKGDALFNLR-RVSDEKGRS---MYRCTVTMNDAQIVLVEGCQCGE---EAEVRAA 1325

Query: 217  AEVLK 221
             E ++
Sbjct: 1326 NETIE 1330


>gi|70995776|ref|XP_752643.1| 60S ribosomal protein L3 [Aspergillus fumigatus Af293]
 gi|66850278|gb|EAL90605.1| 60S ribosomal protein L3 [Aspergillus fumigatus Af293]
 gi|159131396|gb|EDP56509.1| 60S ribosomal protein L3 [Aspergillus fumigatus A1163]
          Length = 363

 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/252 (19%), Positives = 80/252 (31%), Gaps = 37/252 (14%)

Query: 2   SALRYSTLEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
            + + + L  R+ Y  +   L  L +AL  +S   +   + E L  LG  +L    S  L
Sbjct: 81  ESAKLAALHARL-YLPSRLPLETLARALVDASADPNPDFNNESLATLGHDLLTNYTSEHL 139

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELD---------------LASFIRVSSDLR 104
              +       +     + V  +T S +ARE                     ++  +D  
Sbjct: 140 ICTYPRLPLTVIFAAMYAYVGPKTLSAMAREWGVEMASITSRVVYDNEFGDPVKEVADSA 199

Query: 105 KDVCSFMTSIQADVVE--------SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR-- 154
               S     Q    E        +++ A+YL  G   A  F +++   R L   +    
Sbjct: 200 AQAVSETHGAQGVTAEQASATFVRAVMGAIYLHAGRPAAKRFFEQHILSRHLNISELFNF 259

Query: 155 ----RDAKTELQEWAHAKFGVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKR 209
               RD    L      +    P  K+   +G     P F V +        +G   S  
Sbjct: 260 SQPARD----LTRLCARENFERPVAKIISETGRKSRHPVFVVGIYSGQDKLGEGAGASLM 315

Query: 210 AAEQVAAAEVLK 221
            A   AA   LK
Sbjct: 316 EARSRAAVAALK 327


>gi|159163844|pdb|2CPN|A Chain A, Solution Structure Of The Second Dsrbd Of Tar Rna-Binding
           Protein 2
          Length = 89

 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE    K    PEY VT  SGP H   FT+   +       G   SK+ A++ A
Sbjct: 17  NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGSGTSKKLAKRNA 75

Query: 216 AAEVLKR 222
           AA++L R
Sbjct: 76  AAKMLLR 82


>gi|224121666|ref|XP_002318642.1| predicted protein [Populus trichocarpa]
 gi|222859315|gb|EEE96862.1| predicted protein [Populus trichocarpa]
          Length = 179

 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 8/122 (6%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           L+ +IGY F N   L +A+THSS S   QE+ + L  LG  ++   +S            
Sbjct: 40  LQNQIGYTFKNIGYLRRAMTHSSFS---QENNKALSILGSNVIDTSVSMYYLGKDIEISS 96

Query: 69  GELSVRFNSLVSAET-CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
            +L+   +     +T C+     L L   +RVS            ++      ++  A+ 
Sbjct: 97  KDLNRWISENAKVDTSCAVDGMRLGLHRVVRVSPKTNSTA----PTVVCSAFRAIFGAIA 152

Query: 128 LD 129
           +D
Sbjct: 153 ID 154


>gi|301775807|ref|XP_002923310.1| PREDICTED: RISC-loading complex subunit TARBP2-like [Ailuropoda
           melanoleuca]
          Length = 366

 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
           Q  +   +   +    LQE    K    PEY VT  SGP H   FT+   +       G 
Sbjct: 148 QPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFVEIGS 206

Query: 205 DCSKRAAEQVAAAEVLKR 222
             SK+ A++ AAA++L R
Sbjct: 207 GTSKKLAKRNAAAKMLLR 224



 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             + LQE+   + G TP Y +    G  H P FT  V +       G   S
Sbjct: 31  PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVTVGD-TSCTGQGPS 79


>gi|291389267|ref|XP_002711070.1| PREDICTED: TAR RNA binding protein 2 [Oryctolagus cuniculus]
          Length = 366

 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
           Q  +   +   +    LQE    K    PEY VT  SGP H   FT+   +       G 
Sbjct: 148 QPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFVEIGS 206

Query: 205 DCSKRAAEQVAAAEVLKR 222
             SK+ A++ AAA++L R
Sbjct: 207 GTSKKLAKRNAAAKMLLR 224



 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             + LQE+   + G TP Y +    G  H P FT  V +       G   S
Sbjct: 31  PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVTVGD-TSCTGQGPS 79


>gi|281341836|gb|EFB17420.1| hypothetical protein PANDA_012447 [Ailuropoda melanoleuca]
          Length = 350

 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
           Q  +   +   +    LQE    K    PEY VT  SGP H   FT+   +       G 
Sbjct: 132 QPPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFVEIGS 190

Query: 205 DCSKRAAEQVAAAEVLKR 222
             SK+ A++ AAA++L R
Sbjct: 191 GTSKKLAKRNAAAKMLLR 208



 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             + LQE+   + G TP Y +    G  H P FT  V +       G   S
Sbjct: 15  PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVTVGD-TSCTGQGPS 63


>gi|72157362|ref|XP_797998.1| PREDICTED: similar to MGC53736 protein [Strongylocentrotus
           purpuratus]
 gi|115963208|ref|XP_001187016.1| PREDICTED: similar to MGC53736 protein [Strongylocentrotus
           purpuratus]
          Length = 306

 Score = 80.1 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             + LQE   AK GVTP Y    + G  H P+FT+    +G     G   SK+ A+Q AA
Sbjct: 7   PVSILQELC-AKKGVTPVYDTIGQEGASHQPKFTIRCT-AGDVVGNGQGPSKKVAKQSAA 64

Query: 217 AEVLKREGI 225
            +VL++  I
Sbjct: 65  EDVLQQLDI 73



 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 149 KSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             G+  +D    ELQE         PEY+    SGP H+ RF + V +      QG+D S
Sbjct: 83  DEGRSLKDNPVGELQELVTCMGWRKPEYEALEESGPPHNRRFVISVSVD-KYKEQGVDQS 141

Query: 208 KRAAEQVAAAEVLK 221
           KR A++ AA+ +L+
Sbjct: 142 KRLAKRAAASAMLE 155


>gi|321469997|gb|EFX80975.1| hypothetical protein DAPPUDRAFT_303691 [Daphnia pulex]
          Length = 355

 Score = 79.7 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 80/235 (34%), Gaps = 26/235 (11%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSI--------------SHSYQESYERLEFLGDRILGL 53
               R+G  F N + L  ALTH S               S+   ++ E L   G  ++  
Sbjct: 81  AFSNRLGEKF-NEATLRTALTHKSYVERETARLSDIGVDSYLQIQNNEELAVAGGALISK 139

Query: 54  LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
             +  L   F    E  +    + L S      V + + L   +  S    +        
Sbjct: 140 FTNGYLRAVFTRVPEELIMAMHDFLTSTSNLEIVGKHIGLGDLMLCSDFPCESE------ 193

Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA----LKSGKFRRDAKTELQEWAHAKF 169
                +++++AAL    G E A  FV      +     +       D    L +    + 
Sbjct: 194 TYVKSLKAVVAALAESSGEERARIFVQDLVVTQLYGLDINELWNPADPVGNLTDILKREG 253

Query: 170 GVTPEYKVTFRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              PE+++   SG +     + V V       A+G   S   A+++AA E LK+ 
Sbjct: 254 KAEPEFRLIKHSGQNSVLAVYYVGVYSDKNFIAEGAGESLEIAKEMAAREALKQL 308


>gi|302808147|ref|XP_002985768.1| hypothetical protein SELMODRAFT_122841 [Selaginella moellendorffii]
 gi|300146677|gb|EFJ13346.1| hypothetical protein SELMODRAFT_122841 [Selaginella moellendorffii]
          Length = 219

 Score = 79.7 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 4/98 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           ++      L++++GY F N+ +L  AL   S  H    ++ RLEFLGD +L  L++  L 
Sbjct: 69  LTDDDLKELQEKLGYQFRNKQVLRVAL---SF-HDDNFTFRRLEFLGDAVLDYLVTRHLV 124

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
             F     G  +    + ++ E  S ++       +++
Sbjct: 125 RSFPDQSAGRHNTIKQATINKEHYSCISIRHGFHVYLQ 162


>gi|302771083|ref|XP_002968960.1| hypothetical protein SELMODRAFT_90770 [Selaginella moellendorffii]
 gi|300163465|gb|EFJ30076.1| hypothetical protein SELMODRAFT_90770 [Selaginella moellendorffii]
          Length = 128

 Score = 79.7 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 7/124 (5%)

Query: 15  YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
           Y F + +LL+ ALTHSS S     +   L  LG  I+   +          A + EL   
Sbjct: 2   YKFNDSTLLQDALTHSSYSRH---NNGPLHLLGVSIIRASVYKHYLAKNRDATKEELEAM 58

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
            +SL S   C++ A  L L   IR        V      + A    +L  A+ +DG  + 
Sbjct: 59  SSSLSSTTACARRASGLGLDKLIR----ADAPVDRKSDKVLAVAFHALFGAIAMDGSADQ 114

Query: 135 AGTF 138
           A + 
Sbjct: 115 AMSV 118


>gi|327263959|ref|XP_003216784.1| PREDICTED: RISC-loading complex subunit tarbp2-like [Anolis
           carolinensis]
          Length = 383

 Score = 79.7 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE    K    PEY VT  SGP H   FT+   +       G   SK+ A++ A
Sbjct: 179 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGSGTSKKLAKRNA 237

Query: 216 AAEVLKR 222
           AA++L R
Sbjct: 238 AAKMLVR 244



 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             + LQE+   + G TP Y +    G  H P FT  V +  ++   G   S
Sbjct: 82  PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDIS-CTGQGPS 130


>gi|158254910|dbj|BAF83426.1| unnamed protein product [Homo sapiens]
          Length = 366

 Score = 79.3 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 1/78 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
           Q  +   +   +    LQE    K   +PEY VT  SGP H   FT+   +       G 
Sbjct: 148 QPPVSPQQSECNPVGALQELVVQKGWRSPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGS 206

Query: 205 DCSKRAAEQVAAAEVLKR 222
             SK+ A++ AAA++L R
Sbjct: 207 GTSKKLAKRNAAAKMLLR 224



 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             + LQE+   + G TP Y +    G  H P FT  V +       G   S
Sbjct: 31  PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVTVGD-TSCTGQGPS 79


>gi|320170569|gb|EFW47468.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 871

 Score = 79.0 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 63/167 (37%), Gaps = 37/167 (22%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALT----HSSISHSYQESYERLEFLGDRILGLLISTLL 59
            +   +E  +G  F   + L  ALT    H +I     ++Y+ L+F+GD +L   +   L
Sbjct: 702 EKLREVEAILGVRFNEPAWLAMALTADNSHPAIL-PVSKTYQGLDFVGDTVLKYSVQKFL 760

Query: 60  FNHFD------------SAKEGELSVRFNSLV------------SAETCSQVARELDLAS 95
            +                     L+   N  V            +    ++V   L L  
Sbjct: 761 MHWSPADVKRVYGVDMTKTTGRFLTGHHNQPVPVLFEYLQGIIINNLHLTEVFGSLGLHK 820

Query: 96  FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
           ++            F   + AD++E++I A+++D G++    FV ++
Sbjct: 821 YVI--------GYRFHQKVLADLLEAIIGAIFVDQGLDAVQDFVIRH 859


>gi|309800534|ref|ZP_07694685.1| ribonuclease III [Streptococcus infantis SK1302]
 gi|308115845|gb|EFO53370.1| ribonuclease III [Streptococcus infantis SK1302]
          Length = 83

 Score = 79.0 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 4/65 (6%)

Query: 7  STLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTLLFNH 62
          S L+      F ++SLLE A TH+S ++ ++       ERLEFLGD +L LLIS  LF  
Sbjct: 6  SVLQDSFELVFTDKSLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLFKK 65

Query: 63 FDSAK 67
          +    
Sbjct: 66 YPKKT 70


>gi|50897085|dbj|BAD34723.1| Dicer-related RNase III protein Dcr2p [Tetrahymena thermophila]
          Length = 1838

 Score = 79.0 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 60/141 (42%), Gaps = 25/141 (17%)

Query: 34   HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL 93
             +Y    +RLEFLGD +L L+I   LFN F ++  GEL+    SLV  +T   +      
Sbjct: 1616 KNYNLCNQRLEFLGDAVLDLIIVEYLFNKFPNSDPGELTQMKTSLVQNKTLCLINLMKGF 1675

Query: 94   ASFI------------RVSSDLRKDVC--------SFMTSI---QADVVESLIAALYLDG 130
              FI             + +++   +         ++  S+     DV+ESL+ A+++D 
Sbjct: 1676 YKFIIGSIQHNKEEIELLLNNVEMFMGDTSLMYDTTYNQSLIKTLGDVIESLVGAIFIDN 1735

Query: 131  G--IEVAGTFVDKYWKQRALK 149
                E+    V +      L+
Sbjct: 1736 NLDYEITKKIVMETLFAEILQ 1756



 Score = 59.3 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 23   LEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
            L K+LT    + ++ + S ER EFLGD +L  L ST ++     + E  L V    ++  
Sbjct: 1309 LMKSLTSLEYAVNNKESSLERYEFLGDTVLKCLSSTQIYFEHPKSMEDHLHVHRTIIIQN 1368

Query: 82   ETCSQVARELDLASFIRVSSDL 103
               +Q+A +  +  +I  S   
Sbjct: 1369 RNLAQIAVKKKIFKYILSSKIE 1390



 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 4    LRYSTLEKRIGYAFANRSLLEKALTHSSI 32
            ++   +E  +GY F N +LL +A T  SI
Sbjct: 1528 VQLKEIESILGYTFQNINLLFQAFTLPSI 1556


>gi|321451187|gb|EFX62921.1| hypothetical protein DAPPUDRAFT_336204 [Daphnia pulex]
          Length = 158

 Score = 79.0 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 2/107 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            E+  GY F +  +L +AL   + S  S  +  +RLE +GD +LG+L+S  LF       
Sbjct: 26  FEEIFGYKFKDEEMLHQALKRPTASLKSSVKKGDRLELVGDAVLGILVSIGLFRTITMYN 85

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTS 113
            G+L+   ++L   +    +  +  +  F+  +   L  +V  F  +
Sbjct: 86  PGDLTRHRSALTCNDCFGVLTVKFGIHKFLLGLPPSLLHNVNEFAEN 132


>gi|146180696|ref|XP_001470932.1| conserved hypothetical protein [Tetrahymena thermophila]
 gi|146144409|gb|EDK31487.1| conserved hypothetical protein [Tetrahymena thermophila SB210]
          Length = 1822

 Score = 79.0 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 60/141 (42%), Gaps = 25/141 (17%)

Query: 34   HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL 93
             +Y    +RLEFLGD +L L+I   LFN F ++  GEL+    SLV  +T   +      
Sbjct: 1600 KNYNLCNQRLEFLGDAVLDLIIVEYLFNKFPNSDPGELTQMKTSLVQNKTLCLINLMKGF 1659

Query: 94   ASFI------------RVSSDLRKDVC--------SFMTSI---QADVVESLIAALYLDG 130
              FI             + +++   +         ++  S+     DV+ESL+ A+++D 
Sbjct: 1660 YKFIIGSIQHNKEEIELLLNNVEMFMGDTSLMYDTTYNQSLIKTLGDVIESLVGAIFIDN 1719

Query: 131  G--IEVAGTFVDKYWKQRALK 149
                E+    V +      L+
Sbjct: 1720 NLDYEITKKIVMETLFAEILQ 1740



 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 23   LEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSA 81
            L K+LT    + ++ + S ER EFLGD +L  L ST ++     + E  L V    ++  
Sbjct: 1424 LMKSLTSLEYAVNNKESSLERYEFLGDTVLKCLSSTQIYFEHPKSMEDHLHVHRTIIIQN 1483

Query: 82   ETCSQVARELDLASFIRVSSDL 103
               +Q+A +  +  +I  S   
Sbjct: 1484 RNLAQIAVKKKIFKYILSSKIE 1505


>gi|148672021|gb|EDL03968.1| TAR (HIV) RNA binding protein 2, isoform CRA_b [Mus musculus]
          Length = 277

 Score = 79.0 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
           Q  +   +   +    LQE    K    PEY VT  SGP H   FT+   +       G 
Sbjct: 99  QPPVSPQQSECNPVGALQELVVQKGWRLPEYMVTQESGPAHRKEFTMTCRVE-RFIEIGS 157

Query: 205 DCSKRAAEQVAAAEVLKR 222
             SK+ A++ AAA++L R
Sbjct: 158 GTSKKLAKRNAAAKMLLR 175


>gi|166295185|ref|NP_033345.2| RISC-loading complex subunit TARBP2 [Mus musculus]
 gi|12805141|gb|AAH02028.1| TAR (HIV) RNA binding protein 2 [Mus musculus]
 gi|148672020|gb|EDL03967.1| TAR (HIV) RNA binding protein 2, isoform CRA_a [Mus musculus]
          Length = 365

 Score = 79.0 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
           Q  +   +   +    LQE    K    PEY VT  SGP H   FT+   +       G 
Sbjct: 147 QPPVSPQQSECNPVGALQELVVQKGWRLPEYMVTQESGPAHRKEFTMTCRVE-RFIEIGS 205

Query: 205 DCSKRAAEQVAAAEVLKR 222
             SK+ A++ AAA++L R
Sbjct: 206 GTSKKLAKRNAAAKMLLR 223



 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             + LQE+   + G TP Y +    G  H P FT  V +       G   S
Sbjct: 31  PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVTVGD-TSCTGQGPS 79


>gi|77917582|ref|NP_001030113.1| RISC-loading complex subunit TARBP2 [Rattus norvegicus]
 gi|123780849|sp|Q3SWU0|TRBP2_RAT RecName: Full=RISC-loading complex subunit TARBP2
 gi|74356245|gb|AAI04691.1| TAR (HIV-1) RNA binding protein 2 [Rattus norvegicus]
 gi|149031914|gb|EDL86826.1| TAR (HIV) RNA binding protein 2 [Rattus norvegicus]
          Length = 365

 Score = 79.0 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
           Q  +   +   +    LQE    K    PEY VT  SGP H   FT+   +       G 
Sbjct: 147 QPPVSPQQSECNPVGALQELVVQKGWRLPEYMVTQESGPAHRKEFTMTCRVE-RFIEIGS 205

Query: 205 DCSKRAAEQVAAAEVLKR 222
             SK+ A++ AAA++L R
Sbjct: 206 GTSKKLAKRNAAAKMLLR 223



 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             + LQE+   + G TP Y +    G  H P FT  V +       G   S
Sbjct: 31  PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVTVGD-TSCTGQGPS 79


>gi|74188185|dbj|BAE25768.1| unnamed protein product [Mus musculus]
          Length = 274

 Score = 79.0 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
           Q  +   +   +    LQE    K    PEY VT  SGP H   FT+   +       G 
Sbjct: 56  QPPVSPQQSECNPVGALQELVVQKGWRLPEYMVTQESGPAHRKEFTMTCRVE-RFIEIGS 114

Query: 205 DCSKRAAEQVAAAEVLKR 222
             SK+ A++ AAA++L R
Sbjct: 115 GTSKKLAKRNAAAKMLLR 132


>gi|3334379|sp|P97473|TRBP2_MOUSE RecName: Full=RISC-loading complex subunit TARBP2; AltName:
           Full=Protamine-1 RNA-binding protein; Short=PRM-1
           RNA-binding protein; AltName: Full=TAR RNA-binding
           protein 2
 gi|1737216|gb|AAB38885.1| protamine-1 RNA binding protein [Mus musculus]
          Length = 365

 Score = 79.0 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
           Q  +   +   +    LQE    K    PEY VT  SGP H   FT+   +       G 
Sbjct: 147 QPPVSPQQSECNPVGALQELVVQKGWRLPEYMVTQESGPAHRKEFTMTCRVE-RFIEIGS 205

Query: 205 DCSKRAAEQVAAAEVLKR 222
             SK+ A++ AAA++L R
Sbjct: 206 GTSKKLAKRNAAAKMLLR 223



 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             + LQE+   + G TP Y +    G  H P FT  V +       G   S
Sbjct: 31  PISLLQEYG-TRIGKTPVYDLLKEEGQAHQPNFTFRVTVGD-TSCTGTGPS 79


>gi|12834450|dbj|BAB22917.1| unnamed protein product [Mus musculus]
          Length = 134

 Score = 78.6 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 5/82 (6%)

Query: 146 RALKSGKFRRDAKTELQEWA-----HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
           +     +   D K++LQ+         K    P YK     GP H   +TV V   G   
Sbjct: 10  KEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERI 69

Query: 201 AQGMDCSKRAAEQVAAAEVLKR 222
             G   S + AE  AA + L++
Sbjct: 70  GCGKGPSIQQAEMGAAMDALEK 91


>gi|321451362|gb|EFX63042.1| hypothetical protein DAPPUDRAFT_336024 [Daphnia pulex]
          Length = 270

 Score = 78.6 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 66/170 (38%), Gaps = 35/170 (20%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHFD 64
               E+ + Y+F ++ +L +ALT     +S +  +Y+RLE +GD   G L +   F    
Sbjct: 100 VKAFEEILNYSFNDKEVLLEALT---YGNSIRSLNYQRLEVIGDAAFGFLAALNFFKQSL 156

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSF------------- 110
               G++S   ++ V  +T   +A + +  ++I+ +  +L K +  F             
Sbjct: 157 YHSAGDISQLRSACVCNDTFGMLAAKRNFHAYIQNLPPNLVKHLEDFLEFAESENFAPFD 216

Query: 111 ---------------MTSIQADVVESLIAALYLDG--GIEVAGTFVDKYW 143
                          + +  ADV E++  A+  D     E        + 
Sbjct: 217 RELAENEEIIATQVAIPTFLADVFEAVAGAVITDSNLSFETLEKVFVPFM 266


>gi|222631053|gb|EEE63185.1| hypothetical protein OsJ_17994 [Oryza sativa Japonica Group]
          Length = 787

 Score = 78.6 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 4/66 (6%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214
            K+ LQE+A      TPEY  T + GP H+P F   V I+  +     G   +++AAEQ 
Sbjct: 36  FKSRLQEYAQKAGLQTPEYH-TSKEGPSHEPVFKSTVVINNTSYGSLPGF-SNRKAAEQS 93

Query: 215 AAAEVL 220
           AA   L
Sbjct: 94  AAEVAL 99



 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 4/64 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTF-RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           K  LQE+A       P Y  T   SG      F   VEI G+        +K+ AE  AA
Sbjct: 472 KNLLQEYAQKMNYAIPSYICTKPASGLAP---FLCTVEIGGIQYIGAAARTKKDAEIKAA 528

Query: 217 AEVL 220
              L
Sbjct: 529 RTAL 532


>gi|125551761|gb|EAY97470.1| hypothetical protein OsI_19399 [Oryza sativa Indica Group]
          Length = 787

 Score = 78.6 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 4/66 (6%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214
            K+ LQE+A      TPEY  T + GP H+P F   V I+  +     G   +++AAEQ 
Sbjct: 36  FKSRLQEYAQKAGLQTPEYH-TSKEGPSHEPVFKSTVVINNTSYGSLPGF-SNRKAAEQS 93

Query: 215 AAAEVL 220
           AA   L
Sbjct: 94  AAEVAL 99



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 4/64 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTF-RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           K  LQE+A       P Y  T   SG      F   VEI G+        +K+ AE  AA
Sbjct: 472 KNLLQEYAQKMNYAIPSYICTKPASGLAP---FICTVEIGGIQYIGAAARTKKDAEIKAA 528

Query: 217 AEVL 220
              L
Sbjct: 529 RTAL 532


>gi|115463113|ref|NP_001055156.1| Os05g0307400 [Oryza sativa Japonica Group]
 gi|122169278|sp|Q0DJA3|DRB3_ORYSJ RecName: Full=Double-stranded RNA-binding protein 3; AltName:
           Full=dsRNA-binding protein 3
 gi|113578707|dbj|BAF17070.1| Os05g0307400 [Oryza sativa Japonica Group]
 gi|215704133|dbj|BAG92973.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 437

 Score = 78.6 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 4/66 (6%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214
            K+ LQE+A      TPEY  T + GP H+P F   V I+  +     G   +++AAEQ 
Sbjct: 36  FKSRLQEYAQKAGLQTPEYH-TSKEGPSHEPVFKSTVVINNTSYGSLPGF-SNRKAAEQS 93

Query: 215 AAAEVL 220
           AA   L
Sbjct: 94  AAEVAL 99



 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 4/64 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTF-RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           K  LQE+A       P Y  T   SG      F   VEI G+        +K+ AE  AA
Sbjct: 122 KNLLQEYAQKMNYAIPSYICTKPASGLAP---FLCTVEIGGIQYIGAAARTKKDAEIKAA 178

Query: 217 AEVL 220
              L
Sbjct: 179 RTAL 182


>gi|255545990|ref|XP_002514055.1| conserved hypothetical protein [Ricinus communis]
 gi|223547141|gb|EEF48638.1| conserved hypothetical protein [Ricinus communis]
          Length = 361

 Score = 78.6 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 4/66 (6%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214
            K+ LQE+A  K   TP Y+     GP H+P F   V ++ +      G   +++AAEQ 
Sbjct: 17  FKSRLQEYAQKKGLPTPVYETIKE-GPSHEPSFRSTVIVNDIRYDSLPGF-FNRKAAEQS 74

Query: 215 AAAEVL 220
           AA   L
Sbjct: 75  AAEVAL 80



 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 23/63 (36%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           K  LQE+A       P Y       P     F   VEI G+        +K+ AE  AA 
Sbjct: 104 KNLLQEYAQKMNYAIPLYLCQKNESPGRGTLFKCTVEIGGIHYIGASAKTKKEAEIKAAR 163

Query: 218 EVL 220
             L
Sbjct: 164 TAL 166


>gi|169605473|ref|XP_001796157.1| hypothetical protein SNOG_05760 [Phaeosphaeria nodorum SN15]
 gi|111065704|gb|EAT86824.1| hypothetical protein SNOG_05760 [Phaeosphaeria nodorum SN15]
          Length = 159

 Score = 78.6 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 60/147 (40%), Gaps = 10/147 (6%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHS------SISHSYQESYERLEFLGDRILGLLI 55
           SAL  S  E  + + F NR LL +AL ++      +      +  + L  LGD  +  ++
Sbjct: 9   SALILSACEALLSHTFTNRLLLLEALNNTGLPLVYNAKSHVLQRNDALAVLGDARMDAIL 68

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
               ++      +G+ S          T +Q+ R L + +++  +             + 
Sbjct: 69  CRWWWDAGFQRVKGQWSQARLDKCGNVTLAQLGRRLGVDTYVIKNPG----TVVVSDKMV 124

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKY 142
           A  VE+L+ A+YLDGG E     +   
Sbjct: 125 AMAVEALMGAVYLDGGEEALEGVMMAL 151


>gi|167046018|gb|ABZ10540.1| dicer-like protein A [Placozoa sp. DMJ-2008]
          Length = 351

 Score = 78.2 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 62/170 (36%), Gaps = 35/170 (20%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH- 62
            +    E+ +GY F N   L  A THSS       +YE+LEF+GD IL  L+   LF   
Sbjct: 180 EKLHKFEENLGYKFINIDYLILAFTHSSSEFGDSFNYEKLEFVGDSILNYLVIKYLFLAT 239

Query: 63  ----------FDSAKEGELSVRFNSLVSAETC---SQVARELDLA------SFIRVSSDL 103
                     +  A   E+    +   +       S   +E+ L         +   S  
Sbjct: 240 DQDITRSKFFYGIAISNEVYGLLSYAYNFHHLFYQSPFVKEMILGFEKKTADLLEGGSIP 299

Query: 104 RKDVCS------FMTSI---------QADVVESLIAALYLDGGIEVAGTF 138
           R           F  SI          ADV ESL AA+Y D G  ++  +
Sbjct: 300 RNGNKHDWVYTIFSKSIDDDFSIPKELADVFESLAAAIYFDSGQNLSTVW 349


>gi|167046016|gb|ABZ10539.1| dicer-like protein A [Trichoplax adhaerens]
          Length = 351

 Score = 78.2 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 62/170 (36%), Gaps = 35/170 (20%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH- 62
            +    E+ +GY F N   L  A THSS       +YE+LEF+GD IL  L+   LF   
Sbjct: 180 EKLHKFEENLGYKFINIDYLILAFTHSSSEFGDSFNYEKLEFVGDSILNYLVIKYLFLAT 239

Query: 63  ----------FDSAKEGELSVRFNSLVSAETC---SQVARELDLA------SFIRVSSDL 103
                     +  A   E+    +   +       S   +E+ L         +   S  
Sbjct: 240 DQDITRSKFFYGIAISNEVYGLLSYAYNFHHLFYQSPFVKEMILGFEKKTADLLEGGSIP 299

Query: 104 RKDVCS------FMTSI---------QADVVESLIAALYLDGGIEVAGTF 138
           R           F  SI          ADV ESL AA+Y D G  ++  +
Sbjct: 300 RNGNKHDWVYTIFSKSIDDDFSIPKELADVFESLAAAIYFDSGQNLSTVW 349


>gi|294881178|ref|XP_002769283.1| hypothetical protein Pmar_PMAR007697 [Perkinsus marinus ATCC 50983]
 gi|239872561|gb|EER02001.1| hypothetical protein Pmar_PMAR007697 [Perkinsus marinus ATCC 50983]
          Length = 798

 Score = 78.2 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 30/161 (18%)

Query: 14  GYAFA-NRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71
           GY F  +  LL +A TH+S++  S   S ERLE++GD +LG ++    ++         L
Sbjct: 560 GYEFRRHPWLLMEAFTHASVAAVSPSYSNERLEWIGDAVLGAVV----WSKLYEEGRATL 615

Query: 72  SVRFNSLVSAETCSQVARELDLASFIR---VSSDLRKDVCSFM-------------TSIQ 115
           S  F         ++VA  L L +  R   +S  L+  +  ++                 
Sbjct: 616 SS-FIDYTCNFHLARVAV-LKLGAQNRINVLSVALQSAIGRYVRELHHDEQPVPKGPKAL 673

Query: 116 ADVVESLIAALYLDG------GIEVAGTFVDKYWKQRALKS 150
           AD VE++I A++LD       G + A  F+        L  
Sbjct: 674 ADCVEAIIGAIWLDAGGSTGEGWDAAARFIRDNVFSLELAE 714


>gi|294937286|ref|XP_002782038.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239893277|gb|EER13833.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 452

 Score = 78.2 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 30/161 (18%)

Query: 14  GYAFA-NRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71
           GY F  +  LL +A TH+S++  S   S ERLE++GD +LG ++    ++         L
Sbjct: 253 GYEFRRHPWLLMEAFTHASVAAVSPSYSNERLEWIGDAVLGAVV----WSKLYEEGRATL 308

Query: 72  SVRFNSLVSAETCSQVARELDLASFIR---VSSDLRKDVCSFM-------------TSIQ 115
           S  F         ++VA  L L +  R   +S  L+  +  ++                 
Sbjct: 309 SS-FIDYTCNFHLARVAV-LKLGAQNRINVLSVALQSAIGRYVRELHHDEQPVPKGPKAL 366

Query: 116 ADVVESLIAALYLDG------GIEVAGTFVDKYWKQRALKS 150
           AD VE++I A++LD       G + A  F+        L  
Sbjct: 367 ADCVEAIIGAIWLDAGGSTGEGWDAAARFIRDNVFSLELAE 407


>gi|253741929|gb|EES98787.1| Dicer [Giardia intestinalis ATCC 50581]
          Length = 750

 Score = 78.2 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 10/127 (7%)

Query: 21  SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
            LL+ ALT         + Y++LE LGD  L   ++  L     +  EG L+    S  S
Sbjct: 630 RLLQLALT--------PQVYQKLELLGDAFLKCSLALHLHTRHPTLTEGALTRMRQSAES 681

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140
                 + ++L  +  + V +D         + +  D  ES++AA+ L  G E A +FV 
Sbjct: 682 NHVLGVLTKKLP-SPVLEVITDA-HPGIQPDSKVYGDTFESILAAVLLACGEEAASSFVR 739

Query: 141 KYWKQRA 147
           K    R 
Sbjct: 740 KLVLPRV 746



 Score = 74.7 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 6/110 (5%)

Query: 35  SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLA 94
           S+ + ++RLE LGD +LG +++  L   F +A  G L      LV  ET + + R L L 
Sbjct: 327 SHTDIFQRLELLGDAVLGFIVTARLLCLFPNASIGTLVELKMELVRNETLNHLTRMLGLP 386

Query: 95  SFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIEVAGTFVDKYW 143
               +S+ L        +   AD+ E ++ +++    GI     F+ + +
Sbjct: 387 QLAEISNQLLAS-----SKTWADMYEEIVGSIFTGPNGINGCEEFLARTF 431


>gi|242221926|ref|XP_002476701.1| predicted protein [Postia placenta Mad-698-R]
 gi|220724029|gb|EED78105.1| predicted protein [Postia placenta Mad-698-R]
          Length = 232

 Score = 78.2 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 1/57 (1%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLF 60
           + S +E  +GY F +++LL +ALTH+S        SYERLEFLGD  L ++++  L+
Sbjct: 176 QLSLVETMLGYEFTHKALLVQALTHASYHGDLTTMSYERLEFLGDSALDMVVTDWLY 232



 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 50/132 (37%), Gaps = 31/132 (23%)

Query: 39  SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
           +Y+RLE LGD +L  + S  LF  +    EG L+ R +  VS    ++ A    L  +I 
Sbjct: 12  NYQRLETLGDTVLKYITSIKLFADYPLWHEGYLARRKDHAVSNVQLAKCAISKGLYQWII 71

Query: 99  -------------------VSSDLRKDVC------------SFMTSIQADVVESLIAALY 127
                              + S                      T + ADVVESLI A Y
Sbjct: 72  RDRFVPRKWRPHYMSGPEDIGSRTEGANGNNDDKKKKTKTQELSTKVLADVVESLIGAAY 131

Query: 128 LDGGIEVAGTFV 139
             GG ++A   +
Sbjct: 132 EHGGFDLAVNCI 143


>gi|296863417|pdb|3ADL|A Chain A, Structure Of Trbp2 And Its Molecule Implications For Mirna
           P
          Length = 88

 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            LQE    K    PEY VT  SGP H   FT+   +       G   SK+ A++ AAA++
Sbjct: 20  ALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGSGTSKKLAKRNAAAKM 78

Query: 220 LKR 222
           L R
Sbjct: 79  LLR 81


>gi|50308581|ref|XP_454293.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49643428|emb|CAG99380.1| KLLA0E07635p [Kluyveromyces lactis]
          Length = 315

 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 71/229 (31%), Gaps = 30/229 (13%)

Query: 21  SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
           SLL + LT  S S         L   G  +L L +++ L   +       L+   ++ ++
Sbjct: 68  SLLSRCLTCRS-SGEVNYDNVSLNIFGKSLLTLAVTSELMKKYPRLPGVVLNAAVDAYIN 126

Query: 81  AETCSQVARELDLA-----------------------SFIRVSSDLRKDVCSFMTSIQAD 117
               S V R   +                         + + S D   +         A 
Sbjct: 127 DHVLSNVGRSWGIEPETQSVVDRYAKKENVTITLGKLRYFQNSVDELHNFTENNA--MAV 184

Query: 118 VVESLIAALY-LDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPE 174
            V S+ AA+Y +D        F+  +   R L             EL      +    P 
Sbjct: 185 AVRSIFAAVYSVDKDFNQTHKFIADHILSRKLDVKDLFAFEQPTRELAALCRRQGLERPV 244

Query: 175 YKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            K+   +G     P F V V        +G   S + A+  AA + L +
Sbjct: 245 SKLLAENGRLSKSPLFIVGVFSGEEKLGEGYGSSLKEAKARAATDALLK 293


>gi|302816661|ref|XP_002990009.1| hypothetical protein SELMODRAFT_130786 [Selaginella moellendorffii]
 gi|300142320|gb|EFJ09022.1| hypothetical protein SELMODRAFT_130786 [Selaginella moellendorffii]
          Length = 127

 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 49/124 (39%), Gaps = 7/124 (5%)

Query: 15  YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
           Y F + +LL+ ALTHSS S     +   L  LG  I+   +          A + EL   
Sbjct: 1   YKFNDSTLLQDALTHSSYSRH---NNGPLHLLGVSIIRASVYKHYLAKNRDATKEELEAM 57

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
            +SL S   C++ A  L L   IR        V      + A     L  A+ +DG  + 
Sbjct: 58  SSSLSSTTACARRASGLGLDKLIR----ADVPVDRKSDKVLAVAFHVLFGAIAMDGSADQ 113

Query: 135 AGTF 138
           A + 
Sbjct: 114 AMSV 117


>gi|321456688|gb|EFX67789.1| hypothetical protein DAPPUDRAFT_261055 [Daphnia pulex]
          Length = 279

 Score = 77.4 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 51/102 (50%), Gaps = 2/102 (1%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHF 63
            + +E  +GY F ++  L+  LTH S + +    E  +RLE LGD +LG L+  + +   
Sbjct: 74  LAVIETTLGYEFRHKENLKLPLTHISTNPNKVPSEDSDRLETLGDILLGTLVMAICYTTC 133

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK 105
            +   GEL+   + +   +T + +A  + L + +  + + R 
Sbjct: 134 PTYGAGELTNLTSMITCNDTFAVLAVRMGLHAHLNHNMNKRN 175


>gi|169607859|ref|XP_001797349.1| hypothetical protein SNOG_06991 [Phaeosphaeria nodorum SN15]
 gi|111064522|gb|EAT85642.1| hypothetical protein SNOG_06991 [Phaeosphaeria nodorum SN15]
          Length = 843

 Score = 77.4 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 60/162 (37%), Gaps = 17/162 (10%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKAL-----THSSISHSY---QESYERLEFLGDRILGL 53
           +A     LE R+GY F NR    +AL      HS              RL  LGDR+L L
Sbjct: 98  AAATLGALEVRLGYTFQNRMTGIEALKVTGNVHSLYYDGAVYETGMNNRLALLGDRVLSL 157

Query: 54  LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
            +  + F        G  ++  +  VS    +    +L L   I               +
Sbjct: 158 ALCEIWFQT--DHPNGGYALMSSQTVSRAALAVTGHKLGLHLSILTGDG----KGVTRDN 211

Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
           I A+  E+++ A+Y+D G  +    V     ++ +    + +
Sbjct: 212 I-AETFEAIMGAVYVDSGYNM--KVVKDVIGRQKIDDHFYLK 250


>gi|242084480|ref|XP_002442665.1| hypothetical protein SORBIDRAFT_08g000900 [Sorghum bicolor]
 gi|241943358|gb|EES16503.1| hypothetical protein SORBIDRAFT_08g000900 [Sorghum bicolor]
          Length = 394

 Score = 77.4 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214
            K+ LQE+A      TPEY      GP H+P F   V ++        G   S++AAEQ 
Sbjct: 38  FKSRLQEYAQKAGLPTPEYHTLKE-GPSHEPVFKSTVLVNNTTYESLPGF-FSRKAAEQS 95

Query: 215 AAAEVL 220
           AA   L
Sbjct: 96  AAEVAL 101



 Score = 59.7 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFR-SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           K  LQE+A       P Y  T + SG      F   VEI G+        +K+ AE  AA
Sbjct: 126 KNLLQEYAQKMNYAIPSYICTKQASGVAP---FICTVEIGGIQYIGAAARTKKEAEIKAA 182

Query: 217 AEVL 220
              L
Sbjct: 183 RTAL 186


>gi|321445499|gb|EFX60714.1| hypothetical protein DAPPUDRAFT_123225 [Daphnia pulex]
          Length = 145

 Score = 77.0 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 2/95 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
              +EK IGY F N+ LL +A+THSS  ++   ESY   E++GDR+LG  ++  +  +  
Sbjct: 26  LEEVEKTIGYIFKNKLLLIQAMTHSSYKNNCLTESYNEQEWIGDRVLGFEMAKFVSLNCQ 85

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99
                  S  F +L S E  + +     +   I++
Sbjct: 86  D-TVDAKSATFATLTSNEFWAVLTVRHGIHKHIKL 119


>gi|302790644|ref|XP_002977089.1| hypothetical protein SELMODRAFT_106185 [Selaginella moellendorffii]
 gi|300155065|gb|EFJ21698.1| hypothetical protein SELMODRAFT_106185 [Selaginella moellendorffii]
          Length = 299

 Score = 77.0 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           K  LQE+A       P Y+    +GP H+  F   VEI G+    G   SK+ AE  AA 
Sbjct: 89  KNVLQEYAQRNGFSLPIYQ-IEITGPSHNSVFAATVEIGGVLYKGGTAKSKKEAEVKAAR 147

Query: 218 EVL 220
             +
Sbjct: 148 TAI 150



 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVA 215
            K++LQE+A       P+Y    + G  H PRF   VE++G+         + +AAE  A
Sbjct: 2   YKSQLQEFAQKSGWTVPQYDSIKQ-GLPHLPRFQASVEVNGVKYESEDGFPNLKAAEHSA 60

Query: 216 AAEVL 220
           A + L
Sbjct: 61  AKKAL 65


>gi|301108992|ref|XP_002903577.1| Dicer-like 1 (DCL1) [Phytophthora infestans T30-4]
 gi|262097301|gb|EEY55353.1| Dicer-like 1 (DCL1) [Phytophthora infestans T30-4]
          Length = 1664

 Score = 77.0 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 71/229 (31%), Gaps = 85/229 (37%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISHSY---------------------------- 36
            R   L++R+ Y F N+ LL +A+TH S+                                
Sbjct: 1402 RLMLLQQRLKYTFRNKRLLLEAVTHPSVGQLVLHIDQMDANGADGNADGNAGGDIEVMSR 1461

Query: 37   ---------QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
                     +  YERLE+LGD ++  L  +  F  +D    G LS   ++ VS +   + 
Sbjct: 1462 SQKKKKTVWKGDYERLEYLGDALIEYLTLSYAFLMYDKWLPGSLSQWKSATVSNDALGKT 1521

Query: 88   ARE-LDLASFIRVS--------------------SDLRKDV------------------- 107
            A     +   I                                                 
Sbjct: 1522 ALACFGVDECIFAGAVRIDRETMDRVAGIERKYARAEASTGLSPVFEAVGVSKKKAKSKN 1581

Query: 108  ------CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS 150
                     +  + ADV E+L+AA++LD G ++    V   +    L++
Sbjct: 1582 APNGGNSHTLPKMFADVFEALVAAVFLDSGRDL--QLVRDVFMGPLLQT 1628



 Score = 62.4 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 62/152 (40%), Gaps = 25/152 (16%)

Query: 5    RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            + S L  +IG    + +LL+ A T        + +YERLE LGD  L L  S  ++    
Sbjct: 1203 QISHLMGKIGLEL-DMTLLDDATT--------KPAYERLEILGDTFLKLETSWYMYEQRK 1253

Query: 65   S-AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD-LRKDVCSFMTSIQ------- 115
               +EG+L+     ++  +  +Q A    L  ++   ++  +     +  S         
Sbjct: 1254 DIYQEGQLTQLRRDIIRNDRLNQFALAARLHHYMLYPAEVEQHPFQCWKPSCMGKTPDPV 1313

Query: 116  -------ADVVESLIAALYLDGGIEVAGTFVD 140
                   ADV+E++  A  +  G + A  F+ 
Sbjct: 1314 VAPAKWIADVLEAITGAYLVGQGEKGARYFLK 1345


>gi|312212763|emb|CBX92846.1| hypothetical protein [Leptosphaeria maculans]
          Length = 1067

 Score = 76.7 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/151 (27%), Positives = 67/151 (44%), Gaps = 15/151 (9%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKAL--THSSISHSYQ------ESYERLEFLGDRILGL 53
           +A+R   +E R GY F N+ L  +AL  T  +    Y+      +   RL  LGDR+LGL
Sbjct: 123 AAVRVGHIEARTGYNFKNKFLCIEALKNTGKNWPLYYKGVVVEIDRNNRLALLGDRVLGL 182

Query: 54  LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
            +  + F        G  SV  + + +    +   R + L   I +  +L     S +  
Sbjct: 183 ALCEIWF--HSGHSTGNYSVMNSFIETRAALNVTGRAMKLHQDILLQHELAVPANSHV-- 238

Query: 114 IQADVVESLIAALYLDGGIEV-AGTFVDKYW 143
             A+  E++I A+Y+D G  V A   V K+ 
Sbjct: 239 --AEAFEAIIGAIYVDSGHNVPAVKEVLKHL 267


>gi|145502809|ref|XP_001437382.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124404532|emb|CAK69985.1| unnamed protein product [Paramecium tetraurelia]
          Length = 351

 Score = 76.7 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 94/238 (39%), Gaps = 36/238 (15%)

Query: 15  YAFANRSLLEKALTHSSISHSYQE---------SYERLEFLGDRILGLLISTLL----FN 61
           ++F N + L +ALT+      YQ          + E    +G  IL    S  L    ++
Sbjct: 34  FSFQNTNTLAQALTNKIHELEYQSKKGVKYPFGNNEDFVGIGQMILEFYFSDYLIQRGWH 93

Query: 62  HFDSA-----KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
            + +      K  +L +    L+S    + +A    + + ++V + +          I A
Sbjct: 94  SYPNKESQIKKSSDLVLLRQRLLSERNLADIALSYKIDNIVQVGNQI---GLKKNPKILA 150

Query: 117 DVVESLIAALYLDGGI------EVAGTFVDKYWKQ-RALKSGKFRRDAKTELQEWAHAKF 169
           + ++++IAA Y D G       EV    + +   + + +   + +++ K+   E+ +   
Sbjct: 151 ETLKAIIAAQYYDSGYDLDHLREVVQPILKQVLDKGQGVPIVELKQNPKSAFLEFVNGCT 210

Query: 170 GVTPEYKVTFRSGPDHDP------RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            + P  KV+     D          + V +E+S L     +  +KR  EQ+   E LK
Sbjct: 211 NLKP--KVSVEWKKDSSQNGNPINVYQVQLELSNLLSITRVGINKRNTEQIVYREALK 266


>gi|251764897|sp|B0V3F8|PRKRA_DANRE RecName: Full=Interferon-inducible double stranded RNA-dependent
           protein kinase activator A homolog
 gi|169146119|emb|CAQ15451.1| novel protein similar to H.sapiens PRKRA, protein kinase,
           interferon-inducible double stranded RNA dependent
           activator (PRKRA, zgc:162619) [Danio rerio]
          Length = 282

 Score = 76.7 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE A  +    PEY V   +GP H   FT+   + GL    G   SK+ A + A
Sbjct: 99  NPVGILQELAMQRVWCLPEYVVFMETGPGHMKEFTIACRLEGLEE-TGSGSSKKLARRAA 157

Query: 216 AAEVLKRE 223
           A  ++ + 
Sbjct: 158 AENMIAKL 165



 Score = 38.1 bits (88), Expect = 0.96,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 5/53 (9%)

Query: 158 KTELQEWAHA---KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           KT +Q   H    K    P+Y++    G  H P F   V I G    +G   +
Sbjct: 9   KTPIQ-LLHEYGIKISSAPKYELIHADGDAHQPSFMFSVTI-GEVTCKGRGST 59


>gi|148235737|ref|NP_001082830.1| interferon-inducible double stranded RNA-dependent protein kinase
           activator A [Danio rerio]
 gi|134025033|gb|AAI35035.1| Zgc:162619 protein [Danio rerio]
          Length = 282

 Score = 76.7 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE A  +    PEY V   +GP H   FT+   + GL    G   SK+ A + A
Sbjct: 99  NPVGILQELAMQRVWCLPEYVVFMETGPGHMKEFTIACRLEGLEE-TGSGSSKKLARRAA 157

Query: 216 AAEVLKRE 223
           A  ++ + 
Sbjct: 158 AENMIAKL 165



 Score = 38.1 bits (88), Expect = 0.96,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 5/53 (9%)

Query: 158 KTELQEWAHA---KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           KT +Q   H    K    P+Y++    G  H P F   V I G    +G   +
Sbjct: 9   KTPIQ-LLHEYGIKISSAPKYELIHADGDAHQPSFMFSVTI-GEVTCKGRGST 59


>gi|301055340|ref|YP_003793551.1| C-terminal part of ribonuclease III [Bacillus anthracis CI]
 gi|300377509|gb|ADK06413.1| C-terminal part of ribonuclease III [Bacillus cereus biovar
           anthracis str. CI]
          Length = 74

 Score = 76.7 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 25/55 (45%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
            D K++LQE          EY++    GP H+  F   V ++ +A   G   SK+
Sbjct: 2   MDYKSQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVTLNNVALGLGSGKSKK 56


>gi|294881176|ref|XP_002769282.1| hypothetical protein Pmar_PMAR007696 [Perkinsus marinus ATCC 50983]
 gi|239872560|gb|EER02000.1| hypothetical protein Pmar_PMAR007696 [Perkinsus marinus ATCC 50983]
          Length = 1394

 Score = 76.7 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 19/133 (14%)

Query: 14   GYAF-ANRSLLEKALTHSSISH-SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71
            GY F  +  LL ++LTH+S++  S   S ERLE++GD +LG ++   LF          +
Sbjct: 1136 GYVFEKHPWLLTESLTHASVTSVSASYSNERLEWIGDAVLGAVVLQWLFKL--EKPPKNI 1193

Query: 72   SVRFNSLVSAETCSQVARE-LDLASFIR-VSSDLRKDVCSFM-------------TSIQA 116
               F +       ++VA E L +       S+ L + V  F+                 A
Sbjct: 1194 VEAFTANTCNAHLAKVAVERLGVPDLFNAFSAPLLRAVNRFVNELFSGRAVVRRGPKPLA 1253

Query: 117  DVVESLIAALYLD 129
            D VE++I A++LD
Sbjct: 1254 DCVEAIIGAVWLD 1266



 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 14/143 (9%)

Query: 12   RIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK---- 67
             +G    N  +L + LT            ER E+LG+ IL L++S  +++   SA     
Sbjct: 933  LLGLPPLNPRVLCEVLTPKRC--QALVDSERYEYLGNSILQLVVSESVWSKQFSAGGASL 990

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIRV--------SSDLRKDVCSFMTSIQADVV 119
            EG+L+     ++S +  SQ A E  + S +++             KD+   +TS     +
Sbjct: 991  EGKLTSDRQKIISRKRMSQKAVEGGILSLMQMRSPAAVGVGGAATKDILVSITSAARSCM 1050

Query: 120  ESLIAALYLDGGIEVAGTFVDKY 142
             +LI AL    G++     V K+
Sbjct: 1051 LALIGALCDSHGVDCVVKAVTKF 1073


>gi|18656508|gb|AAL77809.1|AF389451_16 ribonuclease-like protein [Tiger frog virus]
          Length = 371

 Score = 76.7 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 79/222 (35%), Gaps = 27/222 (12%)

Query: 20  RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG----ELSVRF 75
           R L  K  T  S++    ++YE LE +GD +      +     F           ++   
Sbjct: 25  RDLWNKVFTPKSVNPD--DNYEALEIVGDGVASYFFPSYFLKRFPQLNSPKGVKTVARLK 82

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA--------LY 127
               S ++ S +A  L    FIR  S       S   S+  D  E+ + A          
Sbjct: 83  IYYGSKKSFSSIADSLGFWKFIR--SGPMPVNPSTRESLLEDTFEAFLGAVCMAVDDEYS 140

Query: 128 LDG-GIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           +DG G  VA   +   +    +        D  T L+E    K  V     V    G   
Sbjct: 141 IDGLGAVVAYKIMADIFDDMDISLEYTALFDTVTRLKELMDVKKDVLGGDAVYNHMGD-- 198

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRA-AEQVA--AAEVLKREG 224
               T V+ ++G    +     KR  A++ A  A ++L+REG
Sbjct: 199 ----TTVITLNGRVIGKATGAIKRDRAKEAAGQALDLLRREG 236


>gi|169146118|emb|CAQ15450.1| novel protein similar to H.sapiens PRKRA, protein kinase,
           interferon-inducible double stranded RNA dependent
           activator (PRKRA, zgc:162619) [Danio rerio]
          Length = 300

 Score = 76.7 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE A  +    PEY V   +GP H   FT+   + GL    G   SK+ A + A
Sbjct: 117 NPVGILQELAMQRVWCLPEYVVFMETGPGHMKEFTIACRLEGLEE-TGSGSSKKLARRAA 175

Query: 216 AAEVLKRE 223
           A  ++ + 
Sbjct: 176 AENMIAKL 183



 Score = 38.1 bits (88), Expect = 0.98,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 5/53 (9%)

Query: 158 KTELQEWAHA---KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           KT +Q   H    K    P+Y++    G  H P F   V I G    +G   +
Sbjct: 27  KTPIQ-LLHEYGIKISSAPKYELIHADGDAHQPSFMFSVTI-GEVTCKGRGST 77


>gi|193627224|ref|XP_001952647.1| PREDICTED: hypothetical protein LOC100161769 [Acyrthosiphon pisum]
          Length = 732

 Score = 76.3 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 75/207 (36%), Gaps = 24/207 (11%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
           THSS S     S+E  +F G        + +L          ELS  F + V  +     
Sbjct: 539 THSSYS---LLSFETGQFTG-----HTGAKVL-------TPAELSAGFQTWVKKDQLKNS 583

Query: 88  A-RELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG-GIEVAGTF----VDK 141
           A     +   +      +      +   Q+  +E L+  + +D  G+          + +
Sbjct: 584 APVNSGIGIHLLQKMGWKP--GEGLGKNQSGSLEPLLLDVKMDKRGLVAEEELQGSRIKR 641

Query: 142 YWKQRALKSGKFR-RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
           + K+  L       +   + L E+   +    P++     SGP H   F + V ++G+  
Sbjct: 642 FSKKATLPVLSLEGKHPVSLLNEFCAKRKWDIPKFNTLDESGPSHRKTFIMTVVVNGVQY 701

Query: 201 AQGMDCSKRAAEQVAAAEVLKREGIWT 227
                 +K+ A+  AA E LK  G+  
Sbjct: 702 CSSRCQTKKLAKMEAAKECLKEIGLLN 728


>gi|317149047|ref|XP_001823093.2| RNAse III [Aspergillus oryzae RIB40]
          Length = 155

 Score = 76.3 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 62/144 (43%), Gaps = 11/144 (7%)

Query: 5   RYSTLEKRIGYAFANRSLLEKAL-THSSIS---HSYQESYERLEFLGDRILGLLISTLLF 60
           R   +E+ I Y F N + + +AL T  S++       + ++ L  LGD  L L+++   +
Sbjct: 11  RIQLIEQIINYTFTNPATIHEALRTPGSMAILTPHRLDGHKDLAQLGDAALRLVLAKDGY 70

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                A  G+++   +   S    ++   +  L  +I V+             + A  VE
Sbjct: 71  QAH--ATRGQINDTHSGKASNAFLARTGFQKGLDRYIYVNPS---QGGIVSDKVMATTVE 125

Query: 121 SLIAALYLDGG--IEVAGTFVDKY 142
           +++ A+Y+D G  I    + V K 
Sbjct: 126 AILGAVYIDSGEDIPAVRSVVAKL 149


>gi|229891681|sp|B6P4U0|TRBP2_BRAFL RecName: Full=Probable RISC-loading complex subunit
           BRAFLDRAFT_242885
          Length = 319

 Score = 76.3 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +   +LQE    +    PEY V    GP H   FT+ V++       G   SK+AA++ A
Sbjct: 120 NPIGQLQELVVERGWRLPEYIVISEQGPPHCKEFTIQVKVEKFKD-TGTGSSKKAAKRSA 178

Query: 216 AAEVLKRE 223
           A  +L R 
Sbjct: 179 AGVLLTRL 186



 Score = 43.9 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             + LQE +    G T +Y +    G  H   F   V + G   A G   S
Sbjct: 7   PISLLQELS-THMGKTAQYDLIATEGAAHQQTFVFRVTV-GEVVATGAGLS 55


>gi|296089026|emb|CBI38729.3| unnamed protein product [Vitis vinifera]
          Length = 227

 Score = 76.3 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 7/104 (6%)

Query: 118 VVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           + ES+  A++LD G + A  + V +      +           ELQE    +     EYK
Sbjct: 23  ICESIAGAIFLDSGRDTAVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGL-EYK 81

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            T RSG       TV V I G+      +  K+ A+++AA   L
Sbjct: 82  AT-RSGN----LATVEVFIDGVQIGIAQNPQKKMAQKLAARNAL 120



 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 6/72 (8%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGMD---CSKRAAEQV 214
           L +    +    P Y+     GP H  RFT  V ++        + +     S + A+  
Sbjct: 154 LNDICLRRNWPMPVYRCVNEGGPAHAKRFTFAVRVNTNDKGWTDECIGEPMPSVKKAKDS 213

Query: 215 AAAEVLKREGIW 226
           AA  +L+    W
Sbjct: 214 AAVLLLELLNKW 225


>gi|225734446|gb|ACO25214.1| RNase III [Epizootic haematopoietic necrosis virus]
          Length = 372

 Score = 76.3 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 78/222 (35%), Gaps = 27/222 (12%)

Query: 20  RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG----ELSVRF 75
           R L  K  T  S++    ++YE LE +GD +      +     F           ++   
Sbjct: 25  RDLWNKVFTPKSVNPD--DNYEALEIMGDGVASYFFPSYFLKRFPQLNSPKGVKTVARLK 82

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA--------LY 127
               S ++ S +A  L    FIR  S       S   S+  D  E+ + A          
Sbjct: 83  IYYGSKKSFSSIADSLGFWKFIR--SGPVPVNPSTRESLLEDTFEAFLGAVCTAVDDEYS 140

Query: 128 LDG-GIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           +DG G  VA   +   +    +        D  T L+E    K  V     V    G   
Sbjct: 141 IDGLGAVVAYKIMADIFDDMDISLEYTALFDTVTRLKELMDVKKDVLGGDAVYDHRGD-- 198

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRA-AEQVA--AAEVLKREG 224
               T V+ + G    +     KR  A++ A  A ++L+REG
Sbjct: 199 ----TTVITLKGRVIGKATGAIKRDRAKEAAGQALDLLRREG 236


>gi|323126808|gb|ADX24105.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
          ATCC 12394]
          Length = 79

 Score = 75.9 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 7  STLEKRI----GYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLISTL 58
            LE+ +       F + +LLE A TH+S ++ ++       ERLEFLGD +L L+IS  
Sbjct: 2  KKLEELLAASFDICFEDHTLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIISEY 61

Query: 59 LFNHFDSAKE 68
          LF  +   ++
Sbjct: 62 LFAKYPKKQK 71


>gi|158706450|sp|A2QX45|DCL22_ASPNC RecName: Full=Dicer-like protein 2-2; Includes: RecName:
            Full=Endoribonuclease dcl2-2; Includes: RecName:
            Full=ATP-dependent helicase dcl2-2
          Length = 1362

 Score = 75.9 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 69/224 (30%), Gaps = 64/224 (28%)

Query: 10   EKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            E+ +GY F ++SL  +++TH S +   Q  SY RL FLG  +L  ++ + L  H      
Sbjct: 1079 EELLGYTFTDKSLAVESMTHPSCTGLVQTTSYRRLSFLGASVLEWIVVSYLHRHAQVMNP 1138

Query: 69   GELSVRFNSLVSAETCSQVARELD--------------------------LASFIRVSSD 102
              +    ++  +    + +A                              L  F+R+ SD
Sbjct: 1139 QRMQSLKSAFTNNTFLTFIAITFHQVREQNHIDVDDEHNVHKNVTTCSIRLWDFLRLHSD 1198

Query: 103  LRKDVCSFM-------------------------------TSIQADVVESLIAALYLDG- 130
                  S                                   + +D+++S+  A+++D  
Sbjct: 1199 ALSTELSDFVQKSSEKADAIKHELWEQRFYPWVRLRALGDMRVLSDIIQSIFGAVFIDSQ 1258

Query: 131  -GIEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKF 169
              +       +K       +  +         K  LQ     + 
Sbjct: 1259 ATLASCDALAEKLGIVPLLEHFISHQITTDHPKDTLQAILPGRK 1302



 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 59/163 (36%), Gaps = 22/163 (13%)

Query: 18   ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
                LL  A+  +SI   ++ ++  L F+GD  +  L +  LF H     EG LS     
Sbjct: 905  QRIDLLAIAIRPTSI--EHRATFRLLAFIGDAFMKYLFAMQLFLHHHLWHEGLLSSLKQR 962

Query: 78   LVSAETCSQVARELDLASFI-------------RVSSDLRKDVCSFMTSI----QADVVE 120
             +S    +    +  L  F+              VS        +   SI     AD+ +
Sbjct: 963  NLSDAGLAHAIHQSGLGKFLISKHLNGKRWVPPLVSGIEPASNEARQRSIGAATLADMTK 1022

Query: 121  SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD---AKTE 160
            +++ A + DGG+  A       + +    +     D   +KT 
Sbjct: 1023 AVVGAAFTDGGLNQAAACASVMFPKLKSWNASSLHDGTYSKTR 1065


>gi|134079420|emb|CAK40801.1| unnamed protein product [Aspergillus niger]
          Length = 1379

 Score = 75.9 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 69/224 (30%), Gaps = 64/224 (28%)

Query: 10   EKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            E+ +GY F ++SL  +++TH S +   Q  SY RL FLG  +L  ++ + L  H      
Sbjct: 1096 EELLGYTFTDKSLAVESMTHPSCTGLVQTTSYRRLSFLGASVLEWIVVSYLHRHAQVMNP 1155

Query: 69   GELSVRFNSLVSAETCSQVARELD--------------------------LASFIRVSSD 102
              +    ++  +    + +A                              L  F+R+ SD
Sbjct: 1156 QRMQSLKSAFTNNTFLTFIAITFHQVREQNHIDVDDEHNVHKNVTTCSIRLWDFLRLHSD 1215

Query: 103  LRKDVCSFM-------------------------------TSIQADVVESLIAALYLDG- 130
                  S                                   + +D+++S+  A+++D  
Sbjct: 1216 ALSTELSDFVQKSSEKADAIKHELWEQRFYPWVRLRALGDMRVLSDIIQSIFGAVFIDSQ 1275

Query: 131  -GIEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKF 169
              +       +K       +  +         K  LQ     + 
Sbjct: 1276 ATLASCDALAEKLGIVPLLEHFISHQITTDHPKDTLQAILPGRK 1319



 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 59/163 (36%), Gaps = 22/163 (13%)

Query: 18   ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
                LL  A+  +SI   ++ ++  L F+GD  +  L +  LF H     EG LS     
Sbjct: 922  QRIDLLAIAIRPTSI--EHRATFRLLAFIGDAFMKYLFAMQLFLHHHLWHEGLLSSLKQR 979

Query: 78   LVSAETCSQVARELDLASFI-------------RVSSDLRKDVCSFMTSI----QADVVE 120
             +S    +    +  L  F+              VS        +   SI     AD+ +
Sbjct: 980  NLSDAGLAHAIHQSGLGKFLISKHLNGKRWVPPLVSGIEPASNEARQRSIGAATLADMTK 1039

Query: 121  SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD---AKTE 160
            +++ A + DGG+  A       + +    +     D   +KT 
Sbjct: 1040 AVVGAAFTDGGLNQAAACASVMFPKLKSWNASSLHDGTYSKTR 1082


>gi|325284065|ref|YP_004256606.1| double-stranded RNA binding domain-containing protein [Deinococcus
           proteolyticus MRP]
 gi|324315874|gb|ADY26989.1| double-stranded RNA binding domain protein [Deinococcus
           proteolyticus MRP]
          Length = 169

 Score = 75.9 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           + K EL     A+   +PE++V   SGP H PRF   V   G    QG   S+R AE+ A
Sbjct: 4   NPKGELIAALAAQGL-SPEFRVDG-SGPAHAPRFVAEVWCDGQRLGQGEGRSRREAERGA 61

Query: 216 AAEVLKRE 223
           A + L+  
Sbjct: 62  AVQALEEL 69


>gi|224150739|ref|XP_002337003.1| predicted protein [Populus trichocarpa]
 gi|222837556|gb|EEE75921.1| predicted protein [Populus trichocarpa]
          Length = 330

 Score = 75.9 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVA 215
            K+ LQE A  +    P Y  T +SG  H P F   VEI G     G    +K+ AE  A
Sbjct: 83  YKSLLQELAQREGCGLPTYW-TDKSGEAHVPTFVSKVEIEGE-IFTGQGAKTKKQAEMSA 140

Query: 216 AAEV 219
           A   
Sbjct: 141 AKIA 144



 Score = 48.1 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
            K +LQ +A  +    P Y    R GP H  RF   V ++G   
Sbjct: 5   FKNQLQTYAQKRNFTLPVYSC-ERVGPPHASRFKCKVTVNGQTY 47


>gi|242210057|ref|XP_002470873.1| predicted protein [Postia placenta Mad-698-R]
 gi|220730100|gb|EED83963.1| predicted protein [Postia placenta Mad-698-R]
          Length = 219

 Score = 75.9 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 12/121 (9%)

Query: 37  QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL--- 93
            +  ERLEFLGD ++   I  +L+           +    +L S  T S +A +LD+   
Sbjct: 44  HDENERLEFLGDALMYATIGRMLYAQIPDGTPNLYTNIRAALHSNATFSHLAEKLDILAV 103

Query: 94  -ASFIR------VSSDLRKDVCSFMTSIQADV--VESLIAALYLDGGIEVAGTFVDKYWK 144
            +S +R              +      I+A     E++I A YL+ G E    +V + ++
Sbjct: 104 SSSVLRALTIRNFGEAAAAPILKTKPEIKATADLFETVIGAYYLERGFEALCVWVKEIYR 163

Query: 145 Q 145
            
Sbjct: 164 P 164


>gi|218508317|ref|ZP_03506195.1| ribonuclease III [Rhizobium etli Brasil 5]
          Length = 75

 Score = 75.9 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/63 (50%), Positives = 42/63 (66%)

Query: 1  MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
          +SA   + LE  IG+ FA +  L++ALTH+S       +YERLEFLGDR+LGL I+ LLF
Sbjct: 7  LSAADRAKLENLIGHDFAEKERLDRALTHASARTEKGSNYERLEFLGDRVLGLCIAELLF 66

Query: 61 NHF 63
            F
Sbjct: 67 RTF 69


>gi|255524266|ref|ZP_05391225.1| ribonuclease III [Clostridium carboxidivorans P7]
 gi|255512091|gb|EET88372.1| ribonuclease III [Clostridium carboxidivorans P7]
          Length = 96

 Score = 75.9 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 9/84 (10%)

Query: 6  YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ--ESYERLEFLGDRILGLLISTLLFNHF 63
          +  LE+++   F ++ LL+ ALTHSS ++  +  +  ERLEFLGD +L + IS  LF ++
Sbjct: 14 FVELEQKLDVCFEDKELLKIALTHSSYANGKKNIKFNERLEFLGDSVLQISISEYLFLNY 73

Query: 64 DSAKEGELSVRFNSLVSAETCSQV 87
                       +L+  E    V
Sbjct: 74 SK-------KLKENLLREEHLLCV 90


>gi|226506372|ref|NP_001150455.1| LOC100284085 [Zea mays]
 gi|195639400|gb|ACG39168.1| bcpLH protein [Zea mays]
          Length = 434

 Score = 75.9 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214
            K+ LQE+A      TPEY      GP H+P F   V ++        G   S++AAEQ 
Sbjct: 38  FKSRLQEYAQRVGIPTPEYHTLKE-GPSHEPVFKSTVFVNNTKYESLPGF-FSRKAAEQS 95

Query: 215 AAAEVL 220
           AA   L
Sbjct: 96  AAEVAL 101



 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFR-SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           K  LQE+A       P Y  T + SG      F   VEI G+        +K+ AE  AA
Sbjct: 126 KNLLQEYAQKMNYAIPSYICTKQASGVAP---FVCSVEIGGILYIGAAARTKKEAEIKAA 182

Query: 217 AEVL 220
              L
Sbjct: 183 RTAL 186


>gi|149639721|ref|XP_001515387.1| PREDICTED: similar to Protein kinase, interferon-inducible double
           stranded RNA dependent activator [Ornithorhynchus
           anatinus]
          Length = 397

 Score = 75.9 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 1/75 (1%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
           K  +  +     LQE A       PEY ++  SGP H   F +  ++       G   SK
Sbjct: 203 KQPQKPKSPINSLQELAMRCGWSLPEYTLSKESGPAHKKEFIMNCKLETYVE-TGTGASK 261

Query: 209 RAAEQVAAAEVLKRE 223
           + A++ AA ++L + 
Sbjct: 262 KQAKESAAEKLLAKL 276


>gi|224135779|ref|XP_002322158.1| predicted protein [Populus trichocarpa]
 gi|222869154|gb|EEF06285.1| predicted protein [Populus trichocarpa]
          Length = 160

 Score = 75.9 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 50/125 (40%), Gaps = 8/125 (6%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
             TL+ + GYAF N   L +A+THSS S   +E+ + L  LG  ++   +S         
Sbjct: 18  LDTLQNQTGYAFKNIGYLRRAMTHSSFS---EENNKALSILGSNVIDTSVSMYYLGKDAE 74

Query: 66  AKEGELSVRFNSLVSAET-CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
               +L+ R       +T C+     L L   +RVS             +      +L  
Sbjct: 75  ISSKDLNRRIADNSKVDTSCAVDGMRLGLHKVVRVSPKTNSTT----PLVVCSAFRALFG 130

Query: 125 ALYLD 129
           A+ +D
Sbjct: 131 AIAID 135


>gi|238494382|ref|XP_002378427.1| RNAse III, putative [Aspergillus flavus NRRL3357]
 gi|220695077|gb|EED51420.1| RNAse III, putative [Aspergillus flavus NRRL3357]
          Length = 155

 Score = 75.5 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 61/144 (42%), Gaps = 11/144 (7%)

Query: 5   RYSTLEKRIGYAFANRSLLEKAL-THSSIS---HSYQESYERLEFLGDRILGLLISTLLF 60
           R   +E+ I Y F N + + +AL T  S++       + ++ L  LGD  L L+++   +
Sbjct: 11  RIQLIEQIINYTFTNPATIHEALRTPGSMAILTPHRLDGHKDLAQLGDAALRLVLAKDGY 70

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                A  G++    +   S    ++   +  L  +I V+             + A  VE
Sbjct: 71  QAH--ATRGQIDDTHSGKASNAFLARTGFQKGLDRYIYVNPS---QGGIVSDKVMATTVE 125

Query: 121 SLIAALYLDGG--IEVAGTFVDKY 142
           +++ A+Y+D G  I    + V K 
Sbjct: 126 AILGAVYIDSGEDIPAVRSVVAKL 149


>gi|317033008|ref|XP_001394728.2| hypothetical protein ANI_1_2258094 [Aspergillus niger CBS 513.88]
          Length = 889

 Score = 75.5 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 69/224 (30%), Gaps = 64/224 (28%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           E+ +GY F ++SL  +++TH S +   Q  SY RL FLG  +L  ++ + L  H      
Sbjct: 606 EELLGYTFTDKSLAVESMTHPSCTGLVQTTSYRRLSFLGASVLEWIVVSYLHRHAQVMNP 665

Query: 69  GELSVRFNSLVSAETCSQVARELD--------------------------LASFIRVSSD 102
             +    ++  +    + +A                              L  F+R+ SD
Sbjct: 666 QRMQSLKSAFTNNTFLTFIAITFHQVREQNHIDVDDEHNVHKNVTTCSIRLWDFLRLHSD 725

Query: 103 LRKDVCSFM-------------------------------TSIQADVVESLIAALYLDG- 130
                 S                                   + +D+++S+  A+++D  
Sbjct: 726 ALSTELSDFVQKSSEKADAIKHELWEQRFYPWVRLRALGDMRVLSDIIQSIFGAVFIDSQ 785

Query: 131 -GIEVAGTFVDKY----WKQRALKSGKFRRDAKTELQEWAHAKF 169
             +       +K       +  +         K  LQ     + 
Sbjct: 786 ATLASCDALAEKLGIVPLLEHFISHQITTDHPKDTLQAILPGRK 829



 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 59/163 (36%), Gaps = 22/163 (13%)

Query: 18  ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
               LL  A+  +SI   ++ ++  L F+GD  +  L +  LF H     EG LS     
Sbjct: 432 QRIDLLAIAIRPTSI--EHRATFRLLAFIGDAFMKYLFAMQLFLHHHLWHEGLLSSLKQR 489

Query: 78  LVSAETCSQVARELDLASFI-------------RVSSDLRKDVCSFMTSI----QADVVE 120
            +S    +    +  L  F+              VS        +   SI     AD+ +
Sbjct: 490 NLSDAGLAHAIHQSGLGKFLISKHLNGKRWVPPLVSGIEPASNEARQRSIGAATLADMTK 549

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD---AKTE 160
           +++ A + DGG+  A       + +    +     D   +KT 
Sbjct: 550 AVVGAAFTDGGLNQAAACASVMFPKLKSWNASSLHDGTYSKTR 592


>gi|11931710|emb|CAC19124.1| CIV iridoviral protein homologue [Diadromus pulchellus ascovirus
           4a]
          Length = 280

 Score = 75.5 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 66/192 (34%), Gaps = 19/192 (9%)

Query: 18  ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE----GELSV 73
            N  +   A T  +  +  + +YE  E LGD  +   I + +   F   +       L+ 
Sbjct: 24  NNSKIFAAAFT--TADYDPKFNYEFFEQLGDLTINKFIVSYMSRRFPQLRNRNGVNVLAT 81

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL------- 126
              S  S    S ++ +  L   +R++ +   D      S+  DV E+L  A+       
Sbjct: 82  LRISYGSKNVLSGLSSKYGLDKLVRMTREESLDKTKSRLSVFEDVFEALFGAIEFVFDRD 141

Query: 127 -YLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
            +   G       +   +    +K   +   DAKT L E   A+   +  Y+    S  +
Sbjct: 142 NFPGMGYVFCYRILTAMFDDLDVKIDYESLVDAKTRLNE-LKAEHKFSLTYR---DSRDE 197

Query: 185 HDPRFTVVVEIS 196
               F     I 
Sbjct: 198 ASGMFRSTAVID 209


>gi|49237378|ref|YP_031659.1| ribonuclease III [Frog virus 3]
 gi|228861295|ref|YP_002854318.1| ribonuclease III [Soft-shelled turtle iridovirus]
 gi|47060196|gb|AAT09740.1| ribonuclease III [Frog virus 3]
 gi|194307575|gb|ACF42305.1| ribonuclease III [Soft-shelled turtle iridovirus]
          Length = 371

 Score = 75.5 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 78/222 (35%), Gaps = 27/222 (12%)

Query: 20  RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG----ELSVRF 75
           R L  K  T  S++    ++YE LE +GD +      +     F           ++   
Sbjct: 25  RDLWNKVFTPKSVNPD--DNYEALEIVGDGVASYFFPSYFLKRFPQLNSPKGVKTVARLK 82

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA--------LY 127
               S ++ S +A  L    FIR  S       S   S+  D  E+ + A          
Sbjct: 83  IYYGSKKSFSSIADSLGFWKFIR--SGPVPVNPSTRESLLEDTFEAFLGAVCMAVDDEYS 140

Query: 128 LDG-GIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           +DG G  VA   +   +    +        D  T L+E    K  V     V    G   
Sbjct: 141 IDGLGAVVAYKIMADIFDDMDISLEYTALFDTVTRLKELMDVKKDVLGGDAVYNHRGD-- 198

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRA-AEQVA--AAEVLKREG 224
               T V+ + G    +     KR  A++ A  A ++L+REG
Sbjct: 199 ----TTVITLKGRVIGKATGAIKRDRAKEAAGQALDLLRREG 236


>gi|328784437|ref|XP_624606.3| PREDICTED: RISC-loading complex subunit tarbp2-like [Apis
           mellifera]
          Length = 383

 Score = 75.1 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             + LQE   ++ G TP+Y++    G  H+P F   V ++ +  A G   SK+ A+  AA
Sbjct: 71  PVSILQELL-SRRGTTPKYELIQVEGAIHEPIFRYRVTVADVV-AMGTGKSKKEAKHAAA 128

Query: 217 AEVLKRE 223
             VL + 
Sbjct: 129 RAVLDKL 135



 Score = 69.3 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
             K   +    LQE   ++    P+Y +    G  H+ +FT+V  +       G   SK+
Sbjct: 165 EEKIITNPIGALQEMCMSRHWPPPKYTIENEEGLPHERQFTIVCSVL-KYREVGQGKSKK 223

Query: 210 AAEQVAAAEVLKRE 223
            A++ AA ++ +  
Sbjct: 224 VAKRHAAHKMWQAL 237


>gi|148234413|ref|NP_001079500.1| protein kinase, interferon-inducible double stranded RNA dependent
           activator [Xenopus laevis]
 gi|82176774|sp|Q7ZYA5|PRKAA_XENLA RecName: Full=Interferon-inducible double stranded RNA-dependent
           protein kinase activator A homolog A
 gi|27696370|gb|AAH43873.1| Rbpa protein [Xenopus laevis]
          Length = 309

 Score = 75.1 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 1/84 (1%)

Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
           V    +       + + +    LQE A  K    PEY V   SGP H   FT+   +   
Sbjct: 106 VTDTLRDPKKPPNQMQENPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETF 165

Query: 199 APAQGMDCSKRAAEQVAAAEVLKR 222
               G   SK+ A++VAA ++L +
Sbjct: 166 VE-TGSGTSKQVAKRVAAEKLLTK 188



 Score = 58.2 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           K G  P Y +    G  H+P FT  + I  +  + G   SK+ A+Q AA   L 
Sbjct: 42  KTGNHPVYTLEKAEGQAHNPSFTFRLVIGDIT-SLGEGPSKKTAKQKAAEFALN 94


>gi|3334381|sp|Q91836|PRKAB_XENLA RecName: Full=Interferon-inducible double stranded RNA-dependent
           protein kinase activator A homolog B; AltName:
           Full=Double-stranded RNA-binding protein A; AltName:
           Full=XlRBPA
 gi|214739|gb|AAA49947.1| RNA binding protein [Xenopus laevis]
          Length = 298

 Score = 75.1 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 1/84 (1%)

Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
           V    +       + + +    LQE A  K    PEY V   SGP H   FT+   +   
Sbjct: 95  VTDTLRDPKKPPNQMQENPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETF 154

Query: 199 APAQGMDCSKRAAEQVAAAEVLKR 222
               G   SK+ A++VAA ++L +
Sbjct: 155 VE-TGSGTSKQVAKRVAAEKLLTK 177



 Score = 52.0 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           K G  P Y +    G  H+P FT  + I  +  + G   SK+  +Q AA   L 
Sbjct: 31  KTGNHPVYTLEKAEGQAHNPSFTFRLVIGDIT-SLGEGPSKKTPKQKAAEFALN 83


>gi|255637537|gb|ACU19095.1| unknown [Glycine max]
          Length = 359

 Score = 75.1 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214
            K+ LQE+A      TP Y+     GP H+P F   V ++ +      G   +++AAEQ 
Sbjct: 16  FKSRLQEYAQKAGLPTPVYETIKE-GPSHEPSFRSTVIVNDVRYDSLPGF-FNRKAAEQS 73

Query: 215 AAAEVL 220
           AA   L
Sbjct: 74  AAEVAL 79



 Score = 65.9 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 26/63 (41%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           K  LQE+A       P Y+      P     F+  V+I G+    G   +K+ AE  AA 
Sbjct: 103 KNLLQEYAQKMNYAMPMYQCKKDETPGRASVFSCTVDIGGILYIGGAAKTKKEAEIKAAR 162

Query: 218 EVL 220
             L
Sbjct: 163 TAL 165


>gi|302672657|ref|XP_003026016.1| hypothetical protein SCHCODRAFT_258995 [Schizophyllum commune H4-8]
 gi|300099696|gb|EFI91113.1| hypothetical protein SCHCODRAFT_258995 [Schizophyllum commune H4-8]
          Length = 659

 Score = 75.1 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 55/163 (33%), Gaps = 10/163 (6%)

Query: 46  LGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK 105
           LGD I+ LL    L  +  + K   L +    L S      +A +  L   + +    + 
Sbjct: 148 LGDAIVSLLAWDYLAEYLPNVKFMSLHILKGDLASNRFLGSLAVKYKLHRSLTLDPGYQL 207

Query: 106 DVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWA 165
                   I AD+ E+ +  LY D G++    ++   +K    ++ + R+  K       
Sbjct: 208 VDGLDEHKIHADLFEAYVGGLYYDQGLDAVREWLRPIFKAELERAFELRK--K------- 258

Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA-PAQGMDCS 207
                      V + +      RF   V +        G+  S
Sbjct: 259 QDPGFGEESMMVRYTNDSPWKRRFGRRVRVEEKVGMGVGIGSS 301


>gi|241723276|ref|XP_002413706.1| secreted protein, putative [Ixodes scapularis]
 gi|215507522|gb|EEC17014.1| secreted protein, putative [Ixodes scapularis]
          Length = 211

 Score = 75.1 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 61/162 (37%), Gaps = 30/162 (18%)

Query: 14  GYAFANRSLLEKALTHSSIS----HSYQESYERLEFLGDRILGLLISTLLFNHF-----D 64
           GY F N ++L KAL H S          +++E L+++G  +L  ++       +      
Sbjct: 42  GYTFKNPNILLKALLHPSYKARDRKGAADNFEPLDYVGGFVLDYVVGRTRVRRYILMNSP 101

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS------FMTSIQADV 118
           +  +  +S    +++  ++ +  A + +   ++ +   + K                AD+
Sbjct: 102 NKTQHAMSHAKVAVLRQDSLAYFAVKNNFHKYVFLDRPIEKSSLRDFAEGLRNVHTLADL 161

Query: 119 -------------VESLIAALYLDGGIEVAGTFVDKYWKQRA 147
                         +S+  A+++D G  +    V+  + +  
Sbjct: 162 KFAKKKRSFVYKIFKSVAGAIFVDSGFNI--QEVEPVFLKMI 201


>gi|39965953|ref|XP_365151.1| hypothetical protein [Magnaporthe oryzae 70-15]
 gi|145015378|gb|EDJ99914.1| predicted protein [Magnaporthe oryzae 70-15]
          Length = 147

 Score = 74.7 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 65/148 (43%), Gaps = 13/148 (8%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHS------SISH--SYQESYERLEFLGDRILGLLIST 57
              ++ +IG+ F N+ L ++ALT +      S +    + +    L  +GD IL + +  
Sbjct: 5   IEGIQTKIGHTFGNQRLCDEALTAAGVTLRMSATSQVHHLDGNAALALIGDGILQIGVG- 63

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            L +      +GE S R  ++VS +  + +     L   +  +        +     +A 
Sbjct: 64  -LRSRGLGESKGEASDRLKNIVSNKNLASIFDTAQLGPHVIGNPSQW---GAISAKTKAT 119

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQ 145
           VVE+L+ A+Y+D GIE A   +     +
Sbjct: 120 VVEALLGAVYVDAGIEAAFAVMRHLQIE 147


>gi|115478498|ref|NP_001062844.1| Os09g0315100 [Oryza sativa Japonica Group]
 gi|113631077|dbj|BAF24758.1| Os09g0315100 [Oryza sativa Japonica Group]
          Length = 245

 Score = 74.7 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLF 60
           +   +LE  +GY F +  LL +ALTH S  +      Y+RLEFLGD IL  L +   +
Sbjct: 187 IDVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYY 244



 Score = 51.6 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 57/156 (36%), Gaps = 31/156 (19%)

Query: 15  YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
           + F    +L +ALT       +  S E LE LGD  L  + +  LF+ +    EG L+  
Sbjct: 11  HFFHELQIL-EALTTKKCQEEF--SQESLETLGDSFLKYVTTRHLFSEYRLQHEGILTKM 67

Query: 75  FNSLVSAETCSQVARELDLASFIR-------------VSSDLRKDV-----------CSF 110
             +L+S     Q+A   +L  +I              +  D R +               
Sbjct: 68  KKNLISNAALCQLACSSNLVGYIHAEEFNPRDWIIPCLDYDERGNKKISFLAPNGMYSQR 127

Query: 111 MTSIQ----ADVVESLIAALYLDGGIEVAGTFVDKY 142
             SI+    AD VE+LI A     G + A   +   
Sbjct: 128 KMSIKSKRIADSVEALIGAYLSTAGEKAAFLLMKSL 163


>gi|228469924|ref|ZP_04054860.1| ribonuclease III [Porphyromonas uenonis 60-3]
 gi|228308469|gb|EEK17267.1| ribonuclease III [Porphyromonas uenonis 60-3]
          Length = 91

 Score = 74.7 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++ K+EL EW         E+++       HD  F   V I G    +G   SK+ A+Q 
Sbjct: 13  QNYKSELIEWVQKHHLSH-EFRLEEHQTMPHD-HFIYSVWIDGKPVGRGAGSSKKRAQQE 70

Query: 215 AAAEVLK 221
           AA + L+
Sbjct: 71  AARDTLE 77


>gi|116785242|gb|ABK23649.1| unknown [Picea sitchensis]
          Length = 188

 Score = 74.7 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 62/140 (44%), Gaps = 10/140 (7%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               L+ +I Y F ++SLL K +TH+S S    ++   L  LG  I+   IS    +   
Sbjct: 39  SIEELQTKIKYQFKDKSLLAKTMTHASFS---LDNNAVLNILGSEIIEAAISFHYLSKNS 95

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +  +G+L+ +   + +    S+ A +L L   IRV+  +          I      +L  
Sbjct: 96  TISKGDLTSQKAKISNCSALSKDAFDLQLNELIRVAPKVDP----KAQIIVCGCYRALFG 151

Query: 125 ALYLDG-GIEVAGT--FVDK 141
           A+ +D   ++VA    ++ +
Sbjct: 152 AIGVDAKSLDVAREKFWIRQ 171


>gi|167555192|ref|NP_001107942.1| interferon-induced, double-stranded RNA-activated protein kinase
           [Danio rerio]
 gi|163879058|gb|ABY47905.1| IFN-stimulated dsRNA-activated eIF2-alpha kinase 2 [Danio rerio]
 gi|164508750|emb|CAM07150.1| double-stranded RNA activated protein kinase [Danio rerio]
          Length = 682

 Score = 74.7 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
                 +  + L E+   K   T E++     GP H+ RFT+   ++G     G   +K+
Sbjct: 1   MESLSGNYTSLLNEY-QQKTQCTVEFEEGPTDGPSHNKRFTMRAIVNGQKFPDGTGKTKK 59

Query: 210 AAEQVAAAEVLK 221
            A+Q AA   L+
Sbjct: 60  EAKQNAAKNALE 71



 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
           +S     +    L  +   K  V  ++K+  R GP H+P F   V + G    +    + 
Sbjct: 205 RSSTPDNNYIAYLNNYCQKKKRVY-DFKLVDRIGPPHNPIFVYKVVMDGKEYPEAQGRNA 263

Query: 209 RAAEQVAAAEV 219
           + A+Q AA   
Sbjct: 264 KEAKQNAAQHA 274


>gi|164508752|emb|CAM07151.1| double-stranded RNA activated protein kinase [Danio rerio]
          Length = 682

 Score = 74.7 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
                 +  + L E+   K   T E++     GP H+ RFT+   ++G     G   +K+
Sbjct: 1   MESLSGNYTSLLNEY-QQKTQCTVEFEEGPTDGPSHNKRFTMRAIVNGQKFPDGTGKTKK 59

Query: 210 AAEQVAAAEVLK 221
            A+Q AA   L+
Sbjct: 60  EAKQNAAKNALE 71



 Score = 65.1 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
           +S     +    L  +   K  V  ++K+  R GP H+P F   V + G    +    S 
Sbjct: 205 RSSTPDNNYIAYLNNYCQKKKRVY-DFKLVDRIGPPHNPIFVYKVVMDGKEYPEAQGRSA 263

Query: 209 RAAEQVAAAEV 219
           + A+Q AA   
Sbjct: 264 KEAKQNAAQHA 274


>gi|294464151|gb|ADE77592.1| unknown [Picea sitchensis]
          Length = 505

 Score = 74.3 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  LQE+A  +    PEY VT RSGP H P F   V+ +G   A     SK+ AE+ AA
Sbjct: 346 YKNFLQEFAQKEGIPFPEY-VTDRSGPSHIPIFKSTVKFAGTTFAGKEANSKKQAEKNAA 404

Query: 217 AEV 219
              
Sbjct: 405 MAA 407



 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVA 215
            K  LQE A       PEYK T R GPDH PRF   V  +G A        + + A+  A
Sbjct: 2   FKNRLQEVAQKHCVSLPEYKST-REGPDHAPRFKATVTYNGRAFESPAFCKTAKEAQNAA 60

Query: 216 AAEVLK 221
           A   L+
Sbjct: 61  AEFALE 66


>gi|15078855|ref|NP_149605.1| 142R [Invertebrate iridescent virus 6]
 gi|82013395|sp|O55748|RNC_IIV6 RecName: Full=Putative ribonuclease 3; AltName: Full=Ribonuclease
           III; Short=RNase III
 gi|2738432|gb|AAB94459.1| 142R [Invertebrate iridescent virus 6]
          Length = 292

 Score = 74.3 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 71/230 (30%), Gaps = 39/230 (16%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE----LSVRFNSL 78
              A T  S     + +YE  E LGD  +   I   ++  F   +       ++      
Sbjct: 51  YNTAFT--SRGADDKNNYEMFEQLGDVSVNKFIVNYMYKRFPQLRNPNGVDVVAKLKIKY 108

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA------------- 125
            S      ++  LD+  FI  + D R    +    +  D  ES   A             
Sbjct: 109 ASKNQLQMLSESLDMWRFITATYDERT---NKKKPLLEDTFESFFGATEWLIDSFIEDIA 165

Query: 126 -------LYLDGGIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWA--HAKFGVTPEY 175
                   Y+  G  +    +   + +  +    +   DAKT   E            +Y
Sbjct: 166 LKQGNNNTYVGVGYNIINGILTTLFDRINISLKYENLVDAKTRFNEVIAEQKSIIGDVKY 225

Query: 176 KVTFRSGPDHDPRFT----VVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +  +++G      +       ++        G    KR A++ AA+  L+
Sbjct: 226 EDEYKNGKHTSKIYRYPPNSNLK---ELLGIGTGTLKRDAQEQAASRALE 272


>gi|222616496|gb|EEE52628.1| hypothetical protein OsJ_34969 [Oryza sativa Japonica Group]
          Length = 781

 Score = 74.3 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214
            K+ LQE+A      TPEY  TF+ GP H+P F   V I+  +     G   +++AAEQ 
Sbjct: 34  FKSRLQEYAQKTGLQTPEYH-TFKEGPSHEPVFKSTVVINNTSYDSLPGF-FNRKAAEQS 91

Query: 215 AAAEVL 220
           AA   L
Sbjct: 92  AAEVAL 97



 Score = 57.4 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 4/64 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFR-SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           K  LQE+A       P Y  T   SG      F   VEI G+        +K+ AE  AA
Sbjct: 477 KNLLQEYAQKMNYAIPSYICTKSASGLAP---FICTVEIGGIQYIGAAARTKKDAEIKAA 533

Query: 217 AEVL 220
              L
Sbjct: 534 RTAL 537


>gi|218186287|gb|EEC68714.1| hypothetical protein OsI_37196 [Oryza sativa Indica Group]
          Length = 2010

 Score = 74.3 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%)

Query: 157  AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214
             K+ LQE+A      TPEY  TF+ GP H+P F   V I+  +     G   +++AAEQ 
Sbjct: 1269 FKSRLQEYAQKTGLQTPEYH-TFKEGPSHEPVFKSTVVINNTSYDSLPGF-FNRKAAEQS 1326

Query: 215  AAAEVL 220
            AA   L
Sbjct: 1327 AAEVAL 1332



 Score = 57.4 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 4/64 (6%)

Query: 158  KTELQEWAHAKFGVTPEYKVTFR-SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  LQE+A       P Y  T   SG      F   VEI G+        +K+ AE  AA
Sbjct: 1706 KNLLQEYAQKMNYAIPSYICTKSASGLAP---FICTVEIGGIQYIGAAARTKKDAEIKAA 1762

Query: 217  AEVL 220
               L
Sbjct: 1763 RTAL 1766


>gi|115486946|ref|NP_001065960.1| Os12g0109900 [Oryza sativa Japonica Group]
 gi|122234185|sp|Q0IQN6|DRB8_ORYSJ RecName: Full=Double-stranded RNA-binding protein 8; AltName:
           Full=dsRNA-binding protein 1; Short=OsDRB1; AltName:
           Full=dsRNA-binding protein 8
 gi|108862090|gb|ABG21849.1| Double-stranded RNA binding motif family protein, expressed [Oryza
           sativa Japonica Group]
 gi|113648467|dbj|BAF28979.1| Os12g0109900 [Oryza sativa Japonica Group]
          Length = 424

 Score = 74.3 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214
            K+ LQE+A      TPEY  TF+ GP H+P F   V I+  +     G   +++AAEQ 
Sbjct: 34  FKSRLQEYAQKTGLQTPEYH-TFKEGPSHEPVFKSTVVINNTSYDSLPGF-FNRKAAEQS 91

Query: 215 AAAEVL 220
           AA   L
Sbjct: 92  AAEVAL 97



 Score = 57.4 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 4/64 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFR-SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           K  LQE+A       P Y  T   SG      F   VEI G+        +K+ AE  AA
Sbjct: 120 KNLLQEYAQKMNYAIPSYICTKSASGLAP---FICTVEIGGIQYIGAAARTKKDAEIKAA 176

Query: 217 AEVL 220
              L
Sbjct: 177 RTAL 180


>gi|62912408|gb|AAY21792.1| dsRNA binding protein RBP [Oryza sativa Japonica Group]
          Length = 410

 Score = 74.3 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214
            K+ LQE+A      TPEY  TF+ GP H+P F   V I+  +     G   +++AAEQ 
Sbjct: 34  FKSRLQEYAQKTGLQTPEYH-TFKEGPSHEPVFKSTVVINNTSYDSLPGF-FNRKAAEQS 91

Query: 215 AAAEVL 220
           AA   L
Sbjct: 92  AAEVAL 97



 Score = 57.4 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 4/64 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFR-SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           K  LQE+A       P Y  T   SG      F   VEI G+        +K+ AE  AA
Sbjct: 120 KNLLQEYAQKMNYAIPSYICTKSASGLAP---FICTVEIGGIQYIGAAARTKKDAEIKAA 176

Query: 217 AEVL 220
              L
Sbjct: 177 RTAL 180


>gi|9229939|dbj|BAB00641.1| dsRNA-binding protein ODB1 [Oryza sativa Japonica Group]
          Length = 425

 Score = 74.3 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214
            K+ LQE+A      TPEY  TF+ GP H+P F   V I+  +     G   +++AAEQ 
Sbjct: 34  FKSRLQEYAQKTGLQTPEYH-TFKEGPSHEPVFKSTVVINNTSYDSLPGF-FNRKAAEQS 91

Query: 215 AAAEVL 220
           AA   L
Sbjct: 92  AAEVAL 97



 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 23/66 (34%), Gaps = 7/66 (10%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFR-SGPDHDPRF--TVVVEISGLAPAQGMDCSKRAAEQV 214
           K  LQE+A       P Y  T   SG      F  TV +             +K+ AE  
Sbjct: 120 KNLLQEYAQKMNYAIPSYICTKSASGLAP---FICTVEIWWEYKYIG-AAARTKKDAEIK 175

Query: 215 AAAEVL 220
           AA   L
Sbjct: 176 AARTAL 181


>gi|321463684|gb|EFX74698.1| hypothetical protein DAPPUDRAFT_251621 [Daphnia pulex]
          Length = 308

 Score = 74.3 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 64/174 (36%), Gaps = 37/174 (21%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           +EK +GY F + S L  A+   + +  +  +   +LE +GDR L L+I     +      
Sbjct: 16  IEKMLGYRFTDESWLHMAIQQPTANVRNAAKEAGKLELIGDRALDLIIVDECESRKPEYG 75

Query: 68  EGELSVRFNSLVSAETCSQVARELDLA-------------------------SFIRVSSD 102
            G+L+   ++L    T + +A + +L                            I     
Sbjct: 76  AGQLTTVKSALTCNNTLAVIAIKKNLHLVMQQKLTSSQETILQAFVDQQIENRHIFTHQK 135

Query: 103 LRKDVCSFM---------TSIQADVVESLIAALYLDGG--IEVAGTFVDKYWKQ 145
             + + S             I AD+ E+++ A+Y D G  +E     V    ++
Sbjct: 136 DVRMIPSPKGDLPWEMDYPKIFADLFEAILGAVYKDSGKDLEKTRKVVLDAMEE 189


>gi|299756084|ref|XP_001829079.2| hypothetical protein CC1G_01759 [Coprinopsis cinerea okayama7#130]
 gi|298411515|gb|EAU92714.2| hypothetical protein CC1G_01759 [Coprinopsis cinerea okayama7#130]
          Length = 352

 Score = 74.3 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 55/141 (39%), Gaps = 6/141 (4%)

Query: 18  ANRSLLEKALTHSS------ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL 71
           +N  L+ +  THSS       S   Q   ERL +LG  +L  +++ LLF+     + GE+
Sbjct: 47  SNTDLVLQIFTHSSLRTRLTCSSLDQYDNERLSWLGKHVLDSVVTELLFDTRPMLRAGEI 106

Query: 72  SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG 131
             R   L+  +   +      L   +R    LR+           D+  +  A +YLD G
Sbjct: 107 VERKEELLCDDLFEEWVTHYGLLRKLRYDPVLRESSGITKPQETRDIFYAYTAGVYLDSG 166

Query: 132 IEVAGTFVDKYWKQRALKSGK 152
             V   ++     Q      +
Sbjct: 167 APVVREWIQTLLGQNLNIPNR 187



 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             A+  V+ EY   F SGP H   + V   ++G+   +G   SK+ A++ AA +     G
Sbjct: 292 TAAQRRVSVEYDAQF-SGPSHAGTWLVRCIVNGIPKGEGTGSSKQNAKEEAARQAYYAMG 350

Query: 225 IWT 227
            WT
Sbjct: 351 -WT 352


>gi|313224452|emb|CBY20242.1| unnamed protein product [Oikopleura dioica]
          Length = 2082

 Score = 74.3 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 1/110 (0%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD- 64
               L+  + Y F    L   AL     +   ++++ERLEFLGD +L  L+   L+N    
Sbjct: 1879 IDELQNELEYTFKTPHLCRLALAKKKYTKDPKDNFERLEFLGDAVLDYLVVDELYNRRSA 1938

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
            +   G+L+    S+ S      +A  + L     + +   KD  S M  +
Sbjct: 1939 ALDSGQLTDLKQSITSNNLFGSLAFCMGLPQSTLMKASAAKDHISCMYKL 1988



 Score = 58.5 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 9/92 (9%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             SLL +ALT  + +  +  + ERLEF GD  + +  + +L+  +    +GEL+    + +
Sbjct: 1671 PSLLLRALTQPTANDFF--NLERLEFFGDSFIKIACTRMLYEKYAHFSDGELTSARGAYI 1728

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDVCSFM 111
            S     ++ +       +R+S      +  +M
Sbjct: 1729 SNANFLKLLK-------LRLSDGSCLQIPRYM 1753


>gi|313212467|emb|CBY36441.1| unnamed protein product [Oikopleura dioica]
          Length = 2196

 Score = 74.3 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 1/110 (0%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD- 64
               L+  + Y F    L   AL     +   ++++ERLEFLGD +L  L+   L+N    
Sbjct: 1891 IDELQNELEYTFKTPHLCRLALAKKKYTKDPKDNFERLEFLGDAVLDYLVVDELYNRRSA 1950

Query: 65   SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
            +   G+L+    S+ S      +A  + L     + +   KD  S M  +
Sbjct: 1951 ALDSGQLTDLKQSITSNNLFGSLAFCMGLPQSTLMKASAAKDHISCMYKL 2000



 Score = 58.5 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 9/92 (9%)

Query: 20   RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             SLL +ALT  + +  +  + ERLEF GD  + +  + +L+  +    +GEL+    + +
Sbjct: 1671 PSLLLRALTQPTANDFF--NLERLEFFGDSFIKIACTRMLYEKYAHFSDGELTSARGAYI 1728

Query: 80   SAETCSQVARELDLASFIRVSSDLRKDVCSFM 111
            S     ++ +       +R+S      +  +M
Sbjct: 1729 SNANFLKLLK-------LRLSDGSCLQIPRYM 1753


>gi|330889503|gb|EGH22164.1| ribonuclease III [Pseudomonas syringae pv. mori str. 301020]
          Length = 52

 Score = 74.3 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 3/52 (5%)

Query: 3  ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLL 54
          ++  S LE+++GY F ++ L+  ALTH S +     + ERLEFLGD IL  +
Sbjct: 2  SVSLSRLERQLGYTFKDQELMVLALTHRSFA---GRNNERLEFLGDAILNFV 50


>gi|313679612|ref|YP_004057351.1| double-stranded RNA binding domain protein [Oceanithermus profundus
           DSM 14977]
 gi|313152327|gb|ADR36178.1| double-stranded RNA binding domain protein [Oceanithermus profundus
           DSM 14977]
          Length = 165

 Score = 74.3 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
             K+ L  +  +K    P+++ T  +G + DP F   V ++G   A G   SKR AE+VA
Sbjct: 3   HPKSALNAYCQSKNLPLPKFE-TRGTGTEDDPLFISDVSLNGELLATGQGRSKREAEKVA 61

Query: 216 AAEVLK 221
           A   L+
Sbjct: 62  AELALE 67


>gi|224067130|ref|XP_002302370.1| predicted protein [Populus trichocarpa]
 gi|222844096|gb|EEE81643.1| predicted protein [Populus trichocarpa]
          Length = 355

 Score = 74.3 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214
            K+ LQE+A      TP Y+     GP H+P F   V +  +      G   +++AAEQ 
Sbjct: 16  FKSRLQEYAQKAGLPTPVYETIKE-GPSHEPSFRSTVIVKDVRYDSLPGF-FNRKAAEQS 73

Query: 215 AAAEVL 220
           AA   L
Sbjct: 74  AAEVAL 79



 Score = 62.0 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 24/63 (38%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           K  LQE+A       P Y+      P     F   VEI G+        +K+ AE  AA 
Sbjct: 103 KNLLQEYAQKMNYAIPLYECQKDETPGRGLVFKCTVEIGGIRYIGASTKTKKEAEIKAAR 162

Query: 218 EVL 220
             L
Sbjct: 163 TAL 165


>gi|169763446|ref|XP_001727623.1| 60S ribosomal protein L3 [Aspergillus oryzae RIB40]
 gi|83770651|dbj|BAE60784.1| unnamed protein product [Aspergillus oryzae]
          Length = 403

 Score = 74.3 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 49/292 (16%), Positives = 85/292 (29%), Gaps = 77/292 (26%)

Query: 2   SALRYSTLEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
            + + + L  R+ Y  +   L  L ++L  +S   +   + E L  LG+ +L    S  L
Sbjct: 81  ESAKLAALHARL-YLPSRLPLETLARSLVDASADSNPNFNNEALATLGNDLLSHYTSEHL 139

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVAREL--------------DLASFIRVSSDLRK 105
              +       +     + V  ++ + +A+E                L  F RV      
Sbjct: 140 VCTYPRLPLTVIFAAMYAYVGPKSLAAMAKEWGVEMAAVPGGEVDPGLLQFKRVLPGTDV 199

Query: 106 DVC-------------SFMTSI------------------------------------QA 116
           +               S+  S+                                     A
Sbjct: 200 NAGPVTGTERPNEHRKSWRKSMTSRVVYDNEYGDPVGVSGESATPESQNTQGVTAEHANA 259

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR------RDAKTELQEWAHAKFG 170
             V +++ A+YL  G   A  F ++++  R L            RD    L      +  
Sbjct: 260 TFVRAVMGAIYLHAGRPAAKRFFEQHFLSRHLNISDLFNFSQPARD----LSRLCARENF 315

Query: 171 VTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             P  K+   +G     P F V +        +G   S   A   AA   LK
Sbjct: 316 EPPVAKIISETGRKSRHPVFVVGIFSGQDKLGEGAGASLLEARSRAAVAALK 367


>gi|168061835|ref|XP_001782891.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
           patens]
 gi|162665613|gb|EDQ52291.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
           patens]
          Length = 151

 Score = 74.0 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           K  LQE+A       P+YK   R G +H   F+  VEI+G++ + G   SK+ AE  AA 
Sbjct: 85  KNLLQEFAQKHGYPLPQYKSV-RQGEEHSLVFSSTVEIAGVSYSGGCAKSKKEAEIKAAR 143

Query: 218 EVL 220
             L
Sbjct: 144 TAL 146



 Score = 58.5 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206
            K++LQE+A  +  ++P Y+     G  H+PRF   V ++G         
Sbjct: 2   YKSQLQEYAQKQGLMSPSYEYVKE-GASHEPRFKSTVWVNGRGYESAPGY 50


>gi|321457253|gb|EFX68343.1| hypothetical protein DAPPUDRAFT_114652 [Daphnia pulex]
          Length = 201

 Score = 74.0 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L EW        PEY+V  +SGP H   + +  ++S     +G+  SK+AA+  AA ++L
Sbjct: 135 LLEWRQTTHRPLPEYRVVRKSGPSHSKTYFMTCKLSERV-TEGVGKSKKAAKNDAAEKML 193

Query: 221 K 221
           +
Sbjct: 194 Q 194


>gi|238489357|ref|XP_002375916.1| 60S ribosomal protein L3 [Aspergillus flavus NRRL3357]
 gi|220698304|gb|EED54644.1| 60S ribosomal protein L3 [Aspergillus flavus NRRL3357]
          Length = 403

 Score = 74.0 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 49/292 (16%), Positives = 85/292 (29%), Gaps = 77/292 (26%)

Query: 2   SALRYSTLEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
            + + + L  R+ Y  +   L  L ++L  +S   +   + E L  LG+ +L    S  L
Sbjct: 81  ESAKLAALHARL-YLPSRLPLETLARSLVDASADSNPNFNNEALATLGNDLLSHYTSEHL 139

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVAREL--------------DLASFIRVSSDLRK 105
              +       +     + V  ++ + +A+E                L  F RV      
Sbjct: 140 VCTYPRLPLTVIFAAMYAYVGPKSLAAMAKEWGVEMAAVPGGEVDPGLLQFKRVLPGTDV 199

Query: 106 DVC-------------SFMTSI------------------------------------QA 116
           +               S+  S+                                     A
Sbjct: 200 NAGPVTGTERPNEHRKSWRKSMTSRVVYDNEYGDPVGVSGESATPESQNTQGVTAEHANA 259

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR------RDAKTELQEWAHAKFG 170
             V +++ A+YL  G   A  F ++++  R L            RD    L      +  
Sbjct: 260 TFVRAVMGAIYLHAGRPAAKRFFEQHFLSRHLNISDLFNFSQPARD----LSRLCARENF 315

Query: 171 VTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             P  K+   +G     P F V +        +G   S   A   AA   LK
Sbjct: 316 EPPVAKIISETGRKSRHPVFVVGIFSGQDKLGEGAGASLLEARSRAAVAALK 367


>gi|332271595|gb|AEE36483.1| TAR RNA-binding protein isoform 3 [Marsupenaeus japonicus]
          Length = 296

 Score = 74.0 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 1/69 (1%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
                +    LQE   A+    P Y++T   G  H+  F++   I       G   SK+ 
Sbjct: 124 DGIPGNPVGSLQELCMARRWPPPTYELTSEEGFPHERTFSIACTIGNTRE-IGTGKSKKL 182

Query: 211 AEQVAAAEV 219
           A++ AA ++
Sbjct: 183 AKRQAAYKM 191



 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             + LQE    + G++P+Y +    G  H+P F   V + G   A G   S
Sbjct: 27  PVSLLQELC-MRRGISPKYDLLQIEGAVHEPTFVYRVTV-GEFAANGSGQS 75


>gi|332271593|gb|AEE36482.1| TAR RNA-binding protein isoform 2 [Marsupenaeus japonicus]
          Length = 323

 Score = 74.0 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 1/69 (1%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
                +    LQE   A+    P Y++T   G  H+  F++   I       G   SK+ 
Sbjct: 124 DGIPGNPVGSLQELCMARRWPPPTYELTSEEGFPHERTFSIACTIGNTRE-IGTGKSKKL 182

Query: 211 AEQVAAAEV 219
           A++ AA ++
Sbjct: 183 AKRQAAYKM 191



 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             + LQE    + G++P+Y +    G  H+P F   V + G   A G   S
Sbjct: 27  PVSLLQELC-MRRGISPKYDLLQIEGAVHEPTFVYRVTV-GEFAANGSGQS 75


>gi|332271591|gb|AEE36481.1| TAR RNA-binding protein isoform 1 [Marsupenaeus japonicus]
          Length = 343

 Score = 74.0 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 1/69 (1%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
                +    LQE   A+    P Y++T   G  H+  F++   I       G   SK+ 
Sbjct: 124 DGIPGNPVGSLQELCMARRWPPPTYELTSEEGFPHERTFSIACTIGNTRE-IGTGKSKKL 182

Query: 211 AEQVAAAEV 219
           A++ AA ++
Sbjct: 183 AKRQAAYKM 191



 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             + LQE    + G++P+Y +    G  H+P F   V + G   A G   S
Sbjct: 27  PVSLLQELC-MRRGISPKYDLLQIEGAVHEPTFVYRVTV-GEFAANGSGQS 75


>gi|328905029|gb|AEB54790.1| TRBP1 [Litopenaeus vannamei]
          Length = 343

 Score = 74.0 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 1/69 (1%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
                +    LQE   A+    P Y++T   G  H+  F++   I       G   SK+ 
Sbjct: 124 DGIPGNPVGSLQELCMARRWPPPTYELTSEEGFPHERTFSIACTIGNTRE-IGTGKSKKL 182

Query: 211 AEQVAAAEV 219
           A++ AA ++
Sbjct: 183 AKRQAAYKM 191



 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             + LQE    + G++P+Y +    G  H+P F   V + G   A G   S
Sbjct: 27  PVSLLQELC-MRRGISPKYDLLQIEGAVHEPTFVYRVTV-GEFAANGSGQS 75


>gi|195971116|gb|ACG60900.1| TAR RNA-binding protein 2 [Fenneropenaeus chinensis]
          Length = 343

 Score = 74.0 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 1/69 (1%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
                +    LQE   A+    P Y++T   G  H+  F++   I       G   SK+ 
Sbjct: 124 DGIPGNPVGSLQELCMARRWPPPTYELTSEEGFPHERTFSIACTIGNTRE-IGTGKSKKL 182

Query: 211 AEQVAAAEV 219
           A++ AA ++
Sbjct: 183 AKRQAAYKM 191



 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             + LQE    + G++P+Y +    G  H+P F   V + G   A G   S
Sbjct: 27  PVSLLQELC-MRRGISPKYDLLQIEGAVHEPTFVYRVTV-GEFAANGSGQS 75


>gi|225436071|ref|XP_002272355.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 562

 Score = 74.0 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 7/77 (9%)

Query: 148 LKSGKFRRD----AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203
           L    F+ D     K  L E A  +    P+Y+     GP H P F   V++ G     G
Sbjct: 239 LLQDDFQEDDSGFYKNVLLELAQKELFCIPKYETVKC-GPSHMPTFFSTVKVDGE-IFHG 296

Query: 204 M-DCSKRAAEQVAAAEV 219
               SK+ AE  AA   
Sbjct: 297 KAGRSKKQAEMKAAKAA 313



 Score = 59.7 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVA 215
            K +LQE +  K    P Y      GPDH P F   V ++GL+  +  +  S + A   A
Sbjct: 2   YKAKLQELSQQKRWGLPRYTAMK-DGPDHLPHFKASVYVNGLSFHSPTISTSSKQAHNQA 60

Query: 216 AAEV 219
           A   
Sbjct: 61  AKLA 64



 Score = 54.7 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK-RAAEQVA 215
            K++LQ +A +K    P Y  +   GP H  RF   V I G         +  + AE  A
Sbjct: 173 YKSQLQNYARSKNLDAPLYS-SKCDGPHHALRFKATVTIDGHTFGSPEFFNTLKKAEHAA 231

Query: 216 AAEVL 220
           A   L
Sbjct: 232 AKVAL 236


>gi|221328530|gb|ACM17808.1| TAR RNA-binding protein 2 isoform 3 [Fenneropenaeus chinensis]
          Length = 296

 Score = 74.0 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 1/69 (1%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
                +    LQE   A+    P Y++T   G  H+  F++   I       G   SK+ 
Sbjct: 124 DGIPGNPVGSLQELCMARRWPPPTYELTSEEGFPHERTFSIACTIGNTRE-IGTGKSKKL 182

Query: 211 AEQVAAAEV 219
           A++ AA ++
Sbjct: 183 AKRQAAYKM 191



 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             + LQE    + G++P+Y +    G  H+P F   V + G   A G   S
Sbjct: 27  PVSLLQELC-MRRGISPKYDLLQIEGAVHEPTFVYRVTV-GEFAANGSGQS 75


>gi|221328528|gb|ACM17807.1| TAR RNA-binding protein 2 isoform 2 [Fenneropenaeus chinensis]
          Length = 323

 Score = 74.0 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 1/69 (1%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
                +    LQE   A+    P Y++T   G  H+  F++   I       G   SK+ 
Sbjct: 124 DGIPGNPVGSLQELCMARRWPPPTYELTSEEGFPHERTFSIACTIGNTRE-IGTGKSKKL 182

Query: 211 AEQVAAAEV 219
           A++ AA ++
Sbjct: 183 AKRQAAYKM 191



 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             + LQE    + G++P+Y +    G  H+P F   V + G   A G   S
Sbjct: 27  PVSLLQELC-MRRGISPKYDLLQIEGAVHEPTFVYRVTV-GEFAANGSGQS 75


>gi|242022991|ref|XP_002431920.1| tar RNA binding protein, putative [Pediculus humanus corporis]
 gi|212517264|gb|EEB19182.1| tar RNA binding protein, putative [Pediculus humanus corporis]
          Length = 318

 Score = 74.0 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             + LQE   ++ G TP+Y++    G  H+P F   V ++    A G   SK+ A+  AA
Sbjct: 6   PVSLLQEML-SRQGTTPKYELVQIEGAIHEPTFRYRVTVADNV-AIGTGRSKKVAKHTAA 63

Query: 217 AEVLKREG 224
             +L +  
Sbjct: 64  KNLLDKLN 71



 Score = 68.2 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 1/73 (1%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
            K   +    LQE         P Y++T   G  H+ +FT+   +       G   SK+ 
Sbjct: 99  DKISGNPIGTLQEMCICHRWPPPVYEMTCEEGLPHERQFTMACIVF-KYREVGSGKSKKL 157

Query: 211 AEQVAAAEVLKRE 223
           A++ AA ++ ++ 
Sbjct: 158 AKRQAAHKMWEKL 170


>gi|225543243|ref|NP_001139363.1| dsRNA-activated protein kinase R [Oncorhynchus mykiss]
 gi|155573866|gb|ABU24345.1| dsRNA-activated protein kinase R [Oncorhynchus mykiss]
          Length = 758

 Score = 73.6 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 156 DAKTELQEWAHAKFGV-TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +  ++L E+A  +  +   +++     GPDH   FT+ V I G A   G+  +K+ A+Q 
Sbjct: 5   NYISKLFEYAQRQRQISDIKFEEVGTVGPDHLKTFTLRVVIKGHAYPNGVGKNKKEAKQN 64

Query: 215 AAAEVL 220
           AA   L
Sbjct: 65  AAKHAL 70



 Score = 42.8 bits (100), Expect = 0.033,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           +        P++K+  +SGP HDP+F   V I       G+  +
Sbjct: 284 YCQKTKRF-PDFKLVEKSGPSHDPQFVYKVLIDQREYPNGLGKT 326



 Score = 36.2 bits (83), Expect = 3.8,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 12/64 (18%)

Query: 161 LQEWAHAKFGVTPEYKVTFRS--GPDHDPRFTVVV---EISGLAPAQGMDCSKRAAEQVA 215
           L E +          K    +  GP++    T       +      +G   +K+ A++ A
Sbjct: 156 LNEHSQKNKLSL---KALEETRVGPNN----TSQCCRYVVGEKEYPEGFGNTKKEAKEEA 208

Query: 216 AAEV 219
           A +V
Sbjct: 209 AMQV 212


>gi|222615377|gb|EEE51509.1| hypothetical protein OsJ_32675 [Oryza sativa Japonica Group]
          Length = 830

 Score = 73.6 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214
            K+ LQE+A      TPEY  TF+ GP H+P F   V I+  +     G   +++AAEQ 
Sbjct: 34  FKSRLQEYAQKAGLQTPEYH-TFKEGPSHEPVFKSTVVINNTSYDSLPGF-FNRKAAEQS 91

Query: 215 AAAEVL 220
           AA   L
Sbjct: 92  AAEVAL 97



 Score = 57.4 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 4/64 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFR-SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           K  LQE+A       P Y  T   SG      F   VEI G+        +K+ AE  AA
Sbjct: 477 KNLLQEYAQKMNYAIPSYICTKSASGLAP---FICTVEIGGIQYIGAAARTKKDAEIKAA 533

Query: 217 AEVL 220
              L
Sbjct: 534 RTAL 537


>gi|218186280|gb|EEC68707.1| hypothetical protein OsI_37189 [Oryza sativa Indica Group]
          Length = 474

 Score = 73.6 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214
            K+ LQE+A      TPEY  TF+ GP H+P F   V I+  +     G   +++AAEQ 
Sbjct: 34  FKSRLQEYAQKAGLQTPEYH-TFKEGPSHEPVFKSTVVINNTSYDSLPGF-FNRKAAEQS 91

Query: 215 AAAEVL 220
           AA   L
Sbjct: 92  AAEVAL 97


>gi|115483791|ref|NP_001065557.1| Os11g0109900 [Oryza sativa Japonica Group]
 gi|122221791|sp|Q0IV63|DRB7_ORYSJ RecName: Full=Double-stranded RNA-binding protein 7; AltName:
           Full=dsRNA-binding protein 7
 gi|108863922|gb|ABG22335.1| Double-stranded RNA binding motif family protein, expressed [Oryza
           sativa Japonica Group]
 gi|113644261|dbj|BAF27402.1| Os11g0109900 [Oryza sativa Japonica Group]
 gi|215686684|dbj|BAG88937.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215768461|dbj|BAH00690.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 473

 Score = 73.6 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214
            K+ LQE+A      TPEY  TF+ GP H+P F   V I+  +     G   +++AAEQ 
Sbjct: 34  FKSRLQEYAQKAGLQTPEYH-TFKEGPSHEPVFKSTVVINNTSYDSLPGF-FNRKAAEQS 91

Query: 215 AAAEVL 220
           AA   L
Sbjct: 92  AAEVAL 97



 Score = 57.4 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 4/64 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFR-SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           K  LQE+A       P Y  T   SG      F   VEI G+        +K+ AE  AA
Sbjct: 120 KNLLQEYAQKMNYAIPSYICTKSASGLAP---FICTVEIGGIQYIGAAARTKKDAEIKAA 176

Query: 217 AEVL 220
              L
Sbjct: 177 RTAL 180


>gi|158298694|ref|XP_318876.4| AGAP009781-PA [Anopheles gambiae str. PEST]
 gi|157014008|gb|EAA14308.5| AGAP009781-PA [Anopheles gambiae str. PEST]
          Length = 341

 Score = 73.6 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           LQE   A+    P Y+     G  H+ +FT+   +       G   SK+ A++ AA  + 
Sbjct: 132 LQEMCMARRLPPPTYETETEEGLPHERQFTIACVVLNYRE-VGEGKSKKIAKRQAAQRMW 190

Query: 221 KRE 223
           +R 
Sbjct: 191 QRL 193



 Score = 48.5 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 145 QRALKSGKFRRDAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201
           + ALKS     + KT    LQE   ++ G+TP+Y +    G  H+P F   V       A
Sbjct: 3   EEALKSELTTNNMKTPISVLQELL-SRRGITPQYDLIQVEGAVHEPTFRYRVSYQDKD-A 60

Query: 202 QGMD 205
            G  
Sbjct: 61  MGTG 64


>gi|27652061|gb|AAO17549.1| putative bidentate RNase III [Giardia intestinalis]
          Length = 627

 Score = 73.6 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 52/134 (38%), Gaps = 14/134 (10%)

Query: 20  RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             LL+ ALT           Y++LE LGD  L   ++  L     +  EG L+    S  
Sbjct: 506 IRLLQIALT--------PHVYQKLELLGDAFLKCSLALHLHALHPTLTEGALTRMRQSAE 557

Query: 80  SAETCSQVARELD--LASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137
           +     ++ +     ++  I              + +  D  E+++AA+ L  G E AG 
Sbjct: 558 TNSVLGRLTKRFPSVVSEVII----ESHPKIQPDSKVYGDTFEAILAAILLACGEEAAGA 613

Query: 138 FVDKYWKQRALKSG 151
           FV ++   + +   
Sbjct: 614 FVREHVLPQVVADA 627



 Score = 68.9 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 6/111 (5%)

Query: 32  ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91
              S+ + ++RLE LGD +LG +++  L   F  A  G L      LV  E  + + + L
Sbjct: 197 FGVSHTDVFQRLELLGDAVLGFIVTARLLCLFPDASVGTLVELKMELVRNEALNYLVQTL 256

Query: 92  DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIEVAGTFVDK 141
            L      S++L        +   AD+ E ++ +++    GI     F+ K
Sbjct: 257 GLPQLAEFSNNLVA-----KSKTWADMYEEIVGSIFTGPNGIYGCEEFLAK 302


>gi|88192985|pdb|2FFL|A Chain A, Crystal Structure Of Dicer From Giardia Intestinalis
 gi|88192986|pdb|2FFL|B Chain B, Crystal Structure Of Dicer From Giardia Intestinalis
 gi|88192987|pdb|2FFL|C Chain C, Crystal Structure Of Dicer From Giardia Intestinalis
 gi|88192988|pdb|2FFL|D Chain D, Crystal Structure Of Dicer From Giardia Intestinalis
 gi|158430470|pdb|2QVW|A Chain A, Structure Of Giardia Dicer Refined Against Twinned Data
 gi|158430471|pdb|2QVW|B Chain B, Structure Of Giardia Dicer Refined Against Twinned Data
 gi|158430472|pdb|2QVW|C Chain C, Structure Of Giardia Dicer Refined Against Twinned Data
 gi|158430473|pdb|2QVW|D Chain D, Structure Of Giardia Dicer Refined Against Twinned Data
          Length = 756

 Score = 73.6 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 52/134 (38%), Gaps = 14/134 (10%)

Query: 20  RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             LL+ ALT           Y++LE LGD  L   ++  L     +  EG L+    S  
Sbjct: 635 IRLLQIALT--------PHVYQKLELLGDAFLKCSLALHLHALHPTLTEGALTRMRQSAE 686

Query: 80  SAETCSQVARELD--LASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137
           +     ++ +     ++  I              + +  D  E+++AA+ L  G E AG 
Sbjct: 687 TNSVLGRLTKRFPSVVSEVII----ESHPKIQPDSKVYGDTFEAILAAILLACGEEAAGA 742

Query: 138 FVDKYWKQRALKSG 151
           FV ++   + +   
Sbjct: 743 FVREHVLPQVVADA 756



 Score = 68.9 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 6/111 (5%)

Query: 32  ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91
              S+ + ++RLE LGD +LG +++  L   F  A  G L      LV  E  + + + L
Sbjct: 326 FGVSHTDVFQRLELLGDAVLGFIVTARLLCLFPDASVGTLVELKMELVRNEALNYLVQTL 385

Query: 92  DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIEVAGTFVDK 141
            L      S++L        +   AD+ E ++ +++    GI     F+ K
Sbjct: 386 GLPQLAEFSNNLVA-----KSKTWADMYEEIVGSIFTGPNGIYGCEEFLAK 431


>gi|159110564|ref|XP_001705536.1| Dicer [Giardia lamblia ATCC 50803]
 gi|229485333|sp|A8BQJ3|DCL_GIAIC RecName: Full=Endoribonuclease Dicer-like
 gi|157433622|gb|EDO77862.1| Dicer [Giardia lamblia ATCC 50803]
          Length = 754

 Score = 73.6 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 52/134 (38%), Gaps = 14/134 (10%)

Query: 20  RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             LL+ ALT           Y++LE LGD  L   ++  L     +  EG L+    S  
Sbjct: 633 IRLLQIALT--------PHVYQKLELLGDAFLKCSLALHLHALHPTLTEGALTRMRQSAE 684

Query: 80  SAETCSQVARELD--LASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137
           +     ++ +     ++  I              + +  D  E+++AA+ L  G E AG 
Sbjct: 685 TNSVLGRLTKRFPSVVSEVII----ESHPKIQPDSKVYGDTFEAILAAILLACGEEAAGA 740

Query: 138 FVDKYWKQRALKSG 151
           FV ++   + +   
Sbjct: 741 FVREHVLPQVVADA 754



 Score = 68.9 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 6/111 (5%)

Query: 32  ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91
              S+ + ++RLE LGD +LG +++  L   F  A  G L      LV  E  + + + L
Sbjct: 324 FGVSHTDVFQRLELLGDAVLGFIVTARLLCLFPDASVGTLVELKMELVRNEALNYLVQTL 383

Query: 92  DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIEVAGTFVDK 141
            L      S++L        +   AD+ E ++ +++    GI     F+ K
Sbjct: 384 GLPQLAEFSNNLVA-----KSKTWADMYEEIVGSIFTGPNGIYGCEEFLAK 429


>gi|50548505|ref|XP_501722.1| YALI0C11429p [Yarrowia lipolytica]
 gi|49647589|emb|CAG82032.1| YALI0C11429p [Yarrowia lipolytica]
          Length = 467

 Score = 73.2 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/285 (15%), Positives = 79/285 (27%), Gaps = 94/285 (32%)

Query: 16  AFANRSLLEKALTHSS--------------------ISHSYQESYERLEFLGDRILGLLI 55
              +  L ++  TH S                       +   SYERLEF+GD I+  ++
Sbjct: 146 EIKDGMLFKRVFTHRSMLLGDTGTASEVHKTATKAGYDQTGNFSYERLEFVGDSIVNNIL 205

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR----------------- 98
           + ++++ F    +  LS     +++     + A      S +R                 
Sbjct: 206 TKIIYDVFPGDDQSHLSFLRGQVIANIVLCRWAAIYGFPSKLRVASSVLSPEQLHILTVS 265

Query: 99  ------VSSDLRKDVCSF----------------------------MTSIQADVVESLIA 124
                 + +D    +  +                               I AD+ E+ +A
Sbjct: 266 ILSPRTLGADANMWLVKYTFPGGYAAEYEKWYKSLEVKPKIDEALCGRKIVADLFEAYVA 325

Query: 125 ALYLDGG-----------IEVAGTFVDKYWKQ--------RALKSGKFRRD--AKTELQE 163
            +YL  G            E+A   +D   ++              K   D  AK  L  
Sbjct: 326 GVYLSYGADGEAVLTKWVYELAQPLLDAIRQEGGSISSMAEQQHGMKKPFDGTAKNRL-Y 384

Query: 164 WAHAKFGVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCS 207
                  + P Y V      PD     TV   +       G   +
Sbjct: 385 ILIGSASLAPVYNVVNEEKYPDGSVMHTVTCSMGTEILGTGKGKN 429


>gi|189198173|ref|XP_001935424.1| 60S ribosomal protein L3 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187981372|gb|EDU47998.1| 60S ribosomal protein L3 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 444

 Score = 73.2 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 79/278 (28%), Gaps = 61/278 (21%)

Query: 3   ALRYSTLEKRIGY--AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           +++   L  R+     F    +L + L H S   +   +   L  LG ++LG   S  L 
Sbjct: 132 SIKLHALRSRLSLPERFP-LQVLARTLVHPSADANPAFNNASLSILGRQLLGYYTSEWLI 190

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLA--------------SFIRVSSDLR-- 104
             +       +     + +  +  + VARE  +                F R+ +     
Sbjct: 191 CTYPRLPMEVVFAAVEAYIGPKALATVAREWGIEAAAEPGGEVDPGLLQFKRIGAGEELP 250

Query: 105 ---------KDVCSFMTSIQADV----------------------------VESLIAALY 127
                    K   +    I                                V +LI AL+
Sbjct: 251 EALRRQVPWKWNVTTTHKILKSDAFGSNNAGPSPHALEKTPVPVEEAAQSFVRALIGALH 310

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTE---LQEWAHAKFGVTPEYKVTFRSGP- 183
           +  G  +   F   ++  R L       D +T    L      +    P  ++   +G  
Sbjct: 311 VHLGSPLVKRFFRDHFLSRHLDISTIF-DFRTPTRDLSWLCRREGFEPPVARLISETGRL 369

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              P F V V        +    S   A   A+A  LK
Sbjct: 370 SRHPVFVVGVYSGRDKLGEASGSSLNEARIRASAAALK 407


>gi|328779214|ref|XP_001121349.2| PREDICTED: probable RISC-loading complex subunit BRAFLDRAFT_242885
           [Apis mellifera]
          Length = 337

 Score = 73.2 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 1/76 (1%)

Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           +       +A   LQ+         P+Y+     GP H   FT+  E++ L    G+  +
Sbjct: 101 IPPDIPFVNAVGALQDLCVENNLQDPKYQQISDVGPPHAKIFTIECEVATLKE-IGVAKT 159

Query: 208 KRAAEQVAAAEVLKRE 223
           K+ A+Q AA ++L + 
Sbjct: 160 KKQAKQEAAKKMLDKL 175



 Score = 62.8 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             + LQE    K  +TP Y++    G  H   F   V+   L  A G+  SK+ A+  AA
Sbjct: 5   PVSILQEMM-VKNKITPNYELIHDGGGSHMNVFAYQVKCDDL-IASGIGRSKKDAKHEAA 62

Query: 217 AEVLK 221
             +L+
Sbjct: 63  KAMLE 67


>gi|18391056|ref|NP_563850.1| HYL1 (HYPONASTIC LEAVES 1); double-stranded RNA binding / miRNA
           binding / protein binding [Arabidopsis thaliana]
 gi|75218980|sp|O04492|DRB1_ARATH RecName: Full=Double-stranded RNA-binding protein 1; AltName:
           Full=Protein HYPONASTIC LEAVES 1; AltName:
           Full=dsRNA-binding protein 1; Short=AtDRB1
 gi|12247457|gb|AAG49890.1|AF276440_1 hyponastic leave 1 [Arabidopsis thaliana]
 gi|2160163|gb|AAB60726.1| F21M12.9 gene product [Arabidopsis thaliana]
 gi|15451102|gb|AAK96822.1| Unknown protein [Arabidopsis thaliana]
 gi|20148393|gb|AAM10087.1| unknown protein [Arabidopsis thaliana]
 gi|332190360|gb|AEE28481.1| dsRNA-binding hyponastic leave 1 protein [Arabidopsis thaliana]
          Length = 419

 Score = 73.2 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214
            K+ LQE+A      TP Y++    GP H   F   V + G+      G   +++AAEQ 
Sbjct: 16  FKSRLQEYAQKYKLPTPVYEIVKE-GPSHKSLFQSTVILDGVRYNSLPGF-FNRKAAEQS 73

Query: 215 AAAEVLKRE 223
           AA   L+  
Sbjct: 74  AAEVALREL 82



 Score = 51.6 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 24/63 (38%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           K  LQE+A       P Y+           +FT  VEI G+        +K+ AE  A  
Sbjct: 103 KNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGR 162

Query: 218 EVL 220
             L
Sbjct: 163 TAL 165


>gi|126326680|ref|XP_001377363.1| PREDICTED: similar to protein activator of the interferon-induced
           protein kinase [Monodelphis domestica]
          Length = 520

 Score = 73.2 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 42/133 (31%), Gaps = 16/133 (12%)

Query: 93  LASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
           +   I       K +            E+ I        ++   +         A    K
Sbjct: 279 IGDIICTGEGSSKKMAKHK------AAEAAIG------HLKANASLCFAVPDPTAPDPSK 326

Query: 153 FRRD---AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
             ++       LQE A       PEY ++   GP H   FT +  +       G   SK+
Sbjct: 327 QPKNQANPIGSLQELAIQHGWRLPEYTLSQEGGPAHKKEFTTICRLESFIE-TGKGASKK 385

Query: 210 AAEQVAAAEVLKR 222
            A++ AA + L +
Sbjct: 386 QAKRNAAEKFLAK 398



 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 158 KTELQ---EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           KT +Q   E+      V P Y+     G  + P FT  V I  +    G   SK+ A+  
Sbjct: 240 KTPIQVLHEYGMKTNNV-PVYEFERADGHANTPSFTFRVTIGDI-ICTGEGSSKKMAKHK 297

Query: 215 AAAEVL 220
           AA   +
Sbjct: 298 AAEAAI 303


>gi|225714608|gb|ACO13150.1| Interferon-inducible double stranded RNA-dependent protein kinase
           activator A homolog [Lepeophtheirus salmonis]
          Length = 334

 Score = 73.2 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 31/73 (42%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
                +   ELQE    +    P Y+V+   G  H+  F +V  +       G   SK+ 
Sbjct: 117 DGIPGNPVGELQELCMNRRMQPPTYEVSREEGQPHERSFVLVCIVGSKYRESGNGKSKKL 176

Query: 211 AEQVAAAEVLKRE 223
           A++ AA ++L + 
Sbjct: 177 AKRQAAYKMLTKL 189



 Score = 43.9 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205
             + LQE  + + G+TP+Y +    G  H+P F   V +     A G  
Sbjct: 22  PVSFLQEL-YVRKGITPKYDLVQIEGAVHEPTFKYRVAVGD-VLATGSG 68


>gi|45686033|ref|YP_003796.1| RNase III [Ambystoma tigrinum virus]
 gi|37722457|gb|AAP33202.1| RNase III [Ambystoma tigrinum stebbensi virus]
          Length = 373

 Score = 73.2 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 78/222 (35%), Gaps = 27/222 (12%)

Query: 20  RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG----ELSVRF 75
           R L  K  T  +++    ++YE LE +GD +      +     F           ++   
Sbjct: 25  RDLWNKVFTPKNVNPD--DNYEALEIVGDGVASYFFPSYFLKRFPQLNNPKGVKTVARLK 82

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA--------LY 127
               S ++ S +A  L    FIR  S       S   S+  D  E+ + A          
Sbjct: 83  IYYGSKKSFSSIADSLGFWKFIR--SGPVPVNPSTRESLLEDTFEAFLGAVCTAVDDEYS 140

Query: 128 LDG-GIEVAGTFVDKYWKQRALKSG-KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           +DG G  VA   +   +    +        D  T L+E    K  V     V    G   
Sbjct: 141 IDGLGAVVAYKIMADIFDDMDISLEYTALFDTVTRLKELMDVKKDVLGGDAVYDHRGD-- 198

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRA-AEQVA--AAEVLKREG 224
               T V+ + G    +     KR  A++ A  A ++L+REG
Sbjct: 199 ----TTVITLKGRVIGKATGAIKRDRAKEAAGQALDLLRREG 236


>gi|307006603|gb|ADN23586.1| endonuclease [Hyalomma marginatum rufipes]
          Length = 195

 Score = 72.8 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 59/161 (36%), Gaps = 25/161 (15%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESY----ERLEFLGDRILGLLISTLLFNHFDS 65
           E+  GY F ++S L +AL H +   S + +     + L+++GD +L  +IS  L  H   
Sbjct: 23  ERLGGYQFKSKSTLLRALLHRTYKQSKRPNNKTFCDPLDYVGDYVLKFIISQYLLEHCAV 82

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLA---------------SFIRVSSDLRK----D 106
             + +L+ R   +   E  + +A                      +I+   D++      
Sbjct: 83  KTKEQLAQRRALVECQEVYALLAVRNGFHEAVFIDDRRDWEHLNEYIKNVKDVQTLKQPS 142

Query: 107 VCSFMTSIQADVVESLIAALYLDGGIE--VAGTFVDKYWKQ 145
                     +  +S+  A+Y+D G +            K 
Sbjct: 143 SVEKRRCFIQNFFQSVAGAVYVDSGYDLRAVERVFLPMLKP 183


>gi|226355144|ref|YP_002784884.1| hypothetical protein Deide_03100 [Deinococcus deserti VCD115]
 gi|226317134|gb|ACO45130.1| Conserved hypothetical protein [Deinococcus deserti VCD115]
          Length = 135

 Score = 72.8 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +AK +L           P ++V    GP H+  F  VV + G     G   SK+ AE++
Sbjct: 1   MNAKGDLIARLVTLGRAAPVFEV-ETHGPAHERLFRAVVMVDGQQLGSGEGRSKKDAERL 59

Query: 215 AAAEVLKREG 224
           AA E L+  G
Sbjct: 60  AAEEALQALG 69


>gi|6323666|ref|NP_013737.1| Mrpl3p [Saccharomyces cerevisiae S288c]
 gi|1350789|sp|P36516|RM03_YEAST RecName: Full=54S ribosomal protein L3, mitochondrial; AltName:
           Full=YmL3; Flags: Precursor
 gi|798935|emb|CAA89127.1| Mrlp3p [Saccharomyces cerevisiae]
 gi|51013573|gb|AAT93080.1| YMR024W [Saccharomyces cerevisiae]
 gi|151946185|gb|EDN64416.1| YmL30 [Saccharomyces cerevisiae YJM789]
 gi|190408263|gb|EDV11528.1| 60S ribosomal protein L3, mitochondrial precursor [Saccharomyces
           cerevisiae RM11-1a]
 gi|256273471|gb|EEU08405.1| Mrpl3p [Saccharomyces cerevisiae JAY291]
 gi|259148602|emb|CAY81847.1| Mrpl3p [Saccharomyces cerevisiae EC1118]
 gi|285814027|tpg|DAA09922.1| TPA: Mrpl3p [Saccharomyces cerevisiae S288c]
          Length = 390

 Score = 72.8 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 69/220 (31%), Gaps = 37/220 (16%)

Query: 39  SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELD------ 92
               L  +G  +L   ++  +   +       L+   N+ +S    + +A+         
Sbjct: 151 DNHGLNIMGKNLLSYHVTKSIIQKYPRLPTVVLNAAVNAYISEAVLAHIAKYWGIEVETT 210

Query: 93  --LASFIRVSSDLRKDVCSFM----------------------TSIQADVVESLIAALYL 128
             L+ ++++       +                          TS  A  V S+IAA++ 
Sbjct: 211 SVLSRYLKM-EPFEFTLGRLKFFNNSLNSKDGIELITGKNFSETSALAMSVRSIIAAIWA 269

Query: 129 ---DGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGP 183
                  +    F+D +   R L   K  +      EL      +    P  K+   SG 
Sbjct: 270 VTEQKDSQAVYRFIDDHIMSRKLDITKMFQFEQPTRELAMLCRREGLEKPVSKLVAESGR 329

Query: 184 -DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
               P F V V        +G   S + A+  AA + L +
Sbjct: 330 LSKSPVFIVHVFSGEETLGEGYGSSLKEAKARAATDALMK 369


>gi|323303562|gb|EGA57353.1| Mrpl3p [Saccharomyces cerevisiae FostersB]
          Length = 390

 Score = 72.8 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 69/220 (31%), Gaps = 37/220 (16%)

Query: 39  SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELD------ 92
               L  +G  +L   ++  +   +       L+   N+ +S    + +A+         
Sbjct: 151 DNHGLNIMGKNLLSYHVTKSIIQKYPRLPTVVLNAAVNAYISEAVLAHIAKYWGIEVETT 210

Query: 93  --LASFIRVSSDLRKDVCSFM----------------------TSIQADVVESLIAALYL 128
             L+ ++++       +                          TS  A  V S+IAA++ 
Sbjct: 211 SVLSRYLKM-EPFEFTLGRLKFFNNSLNSKDGIELITGKNFSETSALAMSVRSIIAAIWA 269

Query: 129 ---DGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGP 183
                  +    F+D +   R L   K  +      EL      +    P  K+   SG 
Sbjct: 270 VTEQKDSQAVYRFIDDHIMSRKLDITKMFQFEQPTRELAMLCRREGLEKPVSKLVAESGR 329

Query: 184 -DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
               P F V V        +G   S + A+  AA + L +
Sbjct: 330 LSKSPVFIVHVFSGEETLGEGYGSSLKEAKARAATDALMK 369


>gi|330982830|gb|EGH80933.1| ribonuclease III [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 49

 Score = 72.8 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 3/51 (5%)

Query: 3  ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGL 53
          ++  S LE+++GY F ++ L+  ALTH S +     + ERLEFLGD IL  
Sbjct: 2  SVSLSRLERQLGYTFKDQELMVLALTHRSFA---GRNNERLEFLGDAILNF 49


>gi|323336239|gb|EGA77510.1| Mrpl3p [Saccharomyces cerevisiae Vin13]
          Length = 390

 Score = 72.8 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 69/220 (31%), Gaps = 37/220 (16%)

Query: 39  SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELD------ 92
               L  +G  +L   ++  +   +       L+   N+ +S    + +A+         
Sbjct: 151 DNHGLNIMGKNLLSYHVTKSIIQKYPRLPTVVLNAAVNAYISEAVLAHIAKYWGIEVETT 210

Query: 93  --LASFIRVSSDLRKDVCSFM----------------------TSIQADVVESLIAALYL 128
             L+ ++++       +                          TS  A  V S+IAA++ 
Sbjct: 211 SVLSRYLKM-EPFEFTLGRLKFFNNSLNSKDGIELITGKNFSETSALAMSVRSIIAAIWA 269

Query: 129 ---DGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGP 183
                  +    F+D +   R L   K  +      EL      +    P  K+   SG 
Sbjct: 270 VTEQKDSQAVYRFIDDHIMSRKLDITKMFQFEQPTRELAMLCRREGLEKPVSKLVAESGR 329

Query: 184 -DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
               P F V V        +G   S + A+  AA + L +
Sbjct: 330 LSKSPVFIVHVFSGEETLGEGYGSSLKEAKARAATDALMK 369


>gi|323332013|gb|EGA73424.1| Mrpl3p [Saccharomyces cerevisiae AWRI796]
          Length = 390

 Score = 72.8 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 69/220 (31%), Gaps = 37/220 (16%)

Query: 39  SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELD------ 92
               L  +G  +L   ++  +   +       L+   N+ +S    + +A+         
Sbjct: 151 DNHGLTIMGKNLLSYHVTKSIIQKYPRLPTVVLNAAVNAYISEAVLAHIAKYWGIEVETT 210

Query: 93  --LASFIRVSSDLRKDVCSFM----------------------TSIQADVVESLIAALYL 128
             L+ ++++       +                          TS  A  V S+IAA++ 
Sbjct: 211 SVLSRYLKM-EPFEFTLGRLKFFNNSLNSKDGIELITGKNFSETSALAMSVRSIIAAIWA 269

Query: 129 ---DGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGP 183
                  +    F+D +   R L   K  +      EL      +    P  K+   SG 
Sbjct: 270 VTEQKDSQAVYRFIDDHIMSRKLDITKMFQFEQPTRELAMLCRREGLEKPVSKLVAESGR 329

Query: 184 -DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
               P F V V        +G   S + A+  AA + L +
Sbjct: 330 LSKSPVFIVHVFSGEETLGEGYGSSLKEAKARAATDALMK 369


>gi|50511727|gb|AAT77416.1| dsRNA-binding protein LH1 [Brassica oleracea var. capitata]
          Length = 283

 Score = 72.8 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214
            K+ LQE+A      TP Y+     GP H P F   V ++ +      G   +++AAEQ 
Sbjct: 16  FKSRLQEYAQRYKLPTPLYETIKE-GPSHKPLFQSTVIVNDVRYDSLPGF-FNRKAAEQS 73

Query: 215 AAAEVLKRE 223
           AA   L+  
Sbjct: 74  AAEVALQEL 82



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 24/63 (38%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           K  LQE+        P Y+          P+FT  VEI G+        +K+ AE  A  
Sbjct: 103 KNLLQEYTQKMNYAIPLYQCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEAEISAGR 162

Query: 218 EVL 220
             L
Sbjct: 163 TAL 165


>gi|224125924|ref|XP_002319709.1| predicted protein [Populus trichocarpa]
 gi|222858085|gb|EEE95632.1| predicted protein [Populus trichocarpa]
          Length = 240

 Score = 72.8 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVA 215
            K  LQE A  +    P Y  T +SG  H P F   VEI G     G    +K+ AE  A
Sbjct: 172 YKNLLQELAQREGCGLPTYS-TNKSGEAHVPTFISTVEIEGE-IFTGQGAKTKKQAEMSA 229

Query: 216 AAEV 219
           A   
Sbjct: 230 AKTA 233



 Score = 61.6 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA--QGMDCSKRAAEQV 214
            K++LQE    +    P Y+ + R G  H+PRF   V ++ ++       + SK+ A+  
Sbjct: 2   YKSKLQELCQQRAWELPTYE-SSRQGQAHNPRFLATVTVNNISFHSPSPSNTSKK-AQND 59

Query: 215 AAAEVLK 221
           AA    +
Sbjct: 60  AAKLAYE 66



 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
            K++LQ +A  +    P Y    R GP H  RF   V ++G 
Sbjct: 88  FKSQLQTYAQKRNFALPVYSC-ERVGPPHSSRFKCKVTVNGQ 128


>gi|198415842|ref|XP_002129369.1| PREDICTED: similar to TAR (HIV) RNA binding protein 2 [Ciona
           intestinalis]
          Length = 326

 Score = 72.8 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 2/77 (2%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
           +      +  +   + LQE+   K   TP+Y +T   G  H P+F     +     A G 
Sbjct: 10  EDLQNESQTFKTPVSTLQEYCQ-KLSKTPQYDLTALEGRAHQPQFVYRCMVGD-VTATGQ 67

Query: 205 DCSKRAAEQVAAAEVLK 221
             SK+ A+  AA  VLK
Sbjct: 68  GGSKKIAKHAAAEAVLK 84



 Score = 64.7 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    LQE   A+    PEY +   +GP H   F +   +       G   +K+ A+++A
Sbjct: 115 NPVGSLQELVVARGWRLPEYALAHETGPAHKKEFIICCTVESFKE-YGSGSAKKHAKRLA 173

Query: 216 AAEVLKR 222
           AA +  +
Sbjct: 174 AANMFTK 180


>gi|119495412|ref|XP_001264491.1| 60S ribosomal protein L3 [Neosartorya fischeri NRRL 181]
 gi|119412653|gb|EAW22594.1| 60S ribosomal protein L3 [Neosartorya fischeri NRRL 181]
          Length = 406

 Score = 72.8 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 56/295 (18%), Positives = 84/295 (28%), Gaps = 80/295 (27%)

Query: 2   SALRYSTLEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
            + + + L  R+ Y  +   L  L +AL  SS   +   + E L  LG  +L    S  L
Sbjct: 81  ESAKLAALHARL-YLPSRLPLETLARALVDSSADPNPDFNNESLATLGHDLLTNYTSEHL 139

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVAREL--------------DLASFIRVSSD--- 102
              +       +     + V  +T S +ARE                L  F RVS     
Sbjct: 140 ICTYPRLPLTVIFAAMYAYVGPKTLSAMAREWGVEMAVAPGGEVDPGLLQFRRVSPGTDL 199

Query: 103 ----------LRKDVCSFMTSI-------------------------------------- 114
                           S+  SI                                      
Sbjct: 200 NAEPVTGTARPNDHRKSWRKSITSRVVYDNEFGDPVKEVADSAAQAVAESHDAQGVTAEQ 259

Query: 115 -QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR------RDAKTELQEWAHA 167
             A  V +++ A+YL  G   A  F +++   R L   +        RD    L      
Sbjct: 260 ASATFVRAVMGAIYLHAGRPAAKRFFEQHILSRHLNISELFNFSQPARD----LTRLCAR 315

Query: 168 KFGVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +    P  K+   +G     P F V +        +G   S   A   AA   LK
Sbjct: 316 ENFERPVAKIISETGRKSRHPVFVVGIYSGQDKLGEGAGASLMEARSRAAVAALK 370


>gi|302916425|ref|XP_003052023.1| hypothetical protein NECHADRAFT_78781 [Nectria haematococca mpVI
           77-13-4]
 gi|256732962|gb|EEU46310.1| hypothetical protein NECHADRAFT_78781 [Nectria haematococca mpVI
           77-13-4]
          Length = 320

 Score = 72.4 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 52/134 (38%), Gaps = 15/134 (11%)

Query: 23  LEKA-LTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF-DSAKEGELSVRFNSLVS 80
           LE A   H  I +    +YE LE+ GD  L  + + L+   F +    G LS     LV 
Sbjct: 59  LETAVFRHPGIGYG--PNYEILEWFGDAALETISTDLVMQTFENHLTVGRLSQLREQLVR 116

Query: 81  AETCSQVARELDLASFIRVSSD------LRKDVCSFMT--SIQADVVESLIAALYLD--- 129
             T ++  R+ +     ++ +D      L +          IQ D+ E+ + A+      
Sbjct: 117 NVTLAEYYRQYEFHKRTQLPADMGTMEQLMRTKPRDRDVIKIQGDIFEAYVGAIIRADPV 176

Query: 130 GGIEVAGTFVDKYW 143
            G   A  ++   W
Sbjct: 177 QGRTNAAAWLKALW 190


>gi|157088318|gb|ABV21735.1| dsRNA-dependent protein kinase [Paralichthys olivaceus]
          Length = 688

 Score = 72.4 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +   +L E+A  +      Y+     GPDH   FT+   ++      G   +K+ A Q A
Sbjct: 5   NYVAKLNEYAQ-RSRSVLRYEDVGADGPDHIKTFTIRAIVNNKVFPDGTGNNKKEARQNA 63

Query: 216 AAEVLK 221
           A   L+
Sbjct: 64  AQNALR 69



 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 1/87 (1%)

Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
           E     ++   +  +L       +    L ++         +Y +  R G  H+P+F   
Sbjct: 191 EAKQDVIEICDRTNSLSLKTEGGNYIGILNQYCQKTKRSH-DYVLEKRCGQAHNPQFFYK 249

Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEV 219
           + I+      G   + + A+Q AA   
Sbjct: 250 LVINNKEYPVGEGKTVKEAKQNAAQLA 276


>gi|328766179|gb|EGF76236.1| hypothetical protein BATDEDRAFT_28693 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 334

 Score = 72.4 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 86/240 (35%), Gaps = 53/240 (22%)

Query: 31  SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90
           S +      ++RLEFLGD +L  L+   L+        G LS     LV  +  + V+ +
Sbjct: 6   SGTGKLGSIFQRLEFLGDAVLSYLVMQHLYKITPPLNPGGLSKLRAELVCNQFLACVSIQ 65

Query: 91  LDLASFIRV--------------------------------------SSDLRKDVCSFMT 112
           + L  +IR                                       S+ L  +  +   
Sbjct: 66  IGLVKYIRHTDMTMEAAIGRFAAWVQGYLASESSTSLPISTSATQIASARLFWNKGNTAP 125

Query: 113 SIQADVVESLIAALYLDGGIEVAG-------TFVDKYWKQRALKSGKFRR---DAKTELQ 162
               DV ES++ A+++D   ++         T +  +W +     G       +   EL+
Sbjct: 126 KTAGDVYESMLGAVFVDSQFDIHCVQSMFDITVISPWWWRFTSLFGGESMIYENPVAELR 185

Query: 163 EWAHAKFG-VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             +++ F  V  +Y  T+  G  H    T  +    +  AQ +   +R A++ AA   ++
Sbjct: 186 TLSYSLFKCVKIDY--TYEYGL-HGGT-TATITYHNMVLAQCLGTGQRDAKKAAACTAVE 241


>gi|307182700|gb|EFN69824.1| Interferon-inducible double stranded RNA-dependent protein kinase
           activator A-like protein [Camponotus floridanus]
          Length = 364

 Score = 72.4 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 156 DAKTELQEWA--HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
           +    LQE+            YKV    GPDH   FT+ V I G    +G    K+ A+Q
Sbjct: 112 NYVGLLQEFCVQQELLASNIVYKVVDERGPDHMKMFTIEVSI-GSICEKGSASCKKIAKQ 170

Query: 214 VAAAEVLKRE 223
            AA  +L+  
Sbjct: 171 EAAKNLLQHL 180



 Score = 44.3 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
             +   + LQE   +K G  P Y            RF   V+      A+G   SK+ A+
Sbjct: 1   MSKSPISLLQELG-SKQGYVPIYNYVSVKKVGIYDRFVCRVDCKEFN-AEGEGNSKKDAK 58

Query: 213 QVAAAEVL 220
             AA ++L
Sbjct: 59  HNAAEKML 66


>gi|169841632|ref|ZP_02874745.1| hypothetical protein cdivTM_31055 [candidate division TM7
           single-cell isolate TM7a]
          Length = 77

 Score = 72.4 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 34/75 (45%)

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           + +  + ++S    S +A EL+L  ++ +S+           SI  D  E+LI A++ D 
Sbjct: 1   MHLPKSQIISEPVFSTIASELELGEYLYLSNGEVMSGGRHRRSILGDAFEALIGAIFKDS 60

Query: 131 GIEVAGTFVDKYWKQ 145
               A     K++ +
Sbjct: 61  DYYTAKNIALKFYLE 75


>gi|307776250|pdb|2L2N|A Chain A, Backbone 1h, 13c, And 15n Chemical Shift Assignments For
           The First Dsrbd Of Protein Hyl1
          Length = 103

 Score = 72.4 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214
            K+ LQE+A      TP Y++    GP H   F   V + G+      G   +++AAEQ 
Sbjct: 19  FKSRLQEYAQKYKLPTPVYEIVKE-GPSHKSLFQSTVILDGVRYNSLPGF-FNRKAAEQS 76

Query: 215 AAAEVLKRE 223
           AA   L+  
Sbjct: 77  AAEVALREL 85


>gi|9967526|emb|CAC05659.1| RBP2 protein [Brassica oleracea var. capitata]
          Length = 283

 Score = 72.4 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 4/69 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214
            K+ LQE+A      TP Y+     GP H   F   V + G+      G   +++AAEQ 
Sbjct: 16  FKSRLQEYAQKYKLPTPIYETVKE-GPSHKSLFQSTVIVDGVRYDSLPGF-FNRKAAEQS 73

Query: 215 AAAEVLKRE 223
           AA   L+  
Sbjct: 74  AAEVALQEL 82



 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 25/63 (39%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           K  LQE+A       P Y+          P+FT  VEI G+        +K+ AE  A  
Sbjct: 103 KNLLQEYAQKMNYAIPLYQCQKSETLGRAPQFTCTVEIGGIKYTGAATKTKKEAEISAGR 162

Query: 218 EVL 220
             L
Sbjct: 163 TAL 165


>gi|328951087|ref|YP_004368422.1| double-stranded RNA binding domain protein [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451411|gb|AEB12312.1| double-stranded RNA binding domain protein [Marinithermus
           hydrothermalis DSM 14884]
          Length = 158

 Score = 72.4 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
             K+ L  +   K    PE+  T  +GP+HDP F   V ++G   A G   +KR AE++A
Sbjct: 3   HPKSALIAYCRTKGLAGPEFD-TRGTGPEHDPLFISDVMVNGTVVATGQGRTKREAERIA 61

Query: 216 AAEVLKRE 223
           A    +  
Sbjct: 62  AELAYEAL 69


>gi|46121645|ref|XP_385377.1| hypothetical protein FG05201.1 [Gibberella zeae PH-1]
          Length = 331

 Score = 72.4 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 83/263 (31%), Gaps = 60/263 (22%)

Query: 19  NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           N  L  +   H  +      ++E+LE+ GD  L ++ +  +F  F     G  S     L
Sbjct: 48  NPDLEAQVFRHPGLG---GPNWEKLEWYGDATLEMISTEFIFETFPHLPSGRCSQIREQL 104

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKD--------VCSFMTSIQADVVESLIAALYLD- 129
           V   T +   RE  +    ++  D+ K             +  +Q DV E+ + A+    
Sbjct: 105 VRNVTLAGYYREYGMEHKTQLPIDVGKMTVLLQTQKNNKDVIKLQGDVFEAYVGAVVKSH 164

Query: 130 -GGIEVAGTFVDKYW-------------------------------------KQRALKSG 151
             G   A  ++   W                                     +  A    
Sbjct: 165 PQGNANAVAWLKMLWGRTIKGQIQQAESYREIIAQAQPIITQQSPTMQEQSTQPEAKAVE 224

Query: 152 KF-RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD---PRFTVVVEISG-----LAPAQ 202
               ++AK  L     A  GV   Y+       D D   P F + V + G        A 
Sbjct: 225 PLTEQNAKARLSTAI-AVPGVKLRYEDMPCKRKDRDTGLPLFAIGVYLDGWGETNKQLAF 283

Query: 203 GMDCSKRAAEQVAAAEVLKREGI 225
           G+   K  A   AA +VLK E +
Sbjct: 284 GVAKRKAEAGGKAALQVLKNEKV 306


>gi|297692032|ref|XP_002823375.1| PREDICTED: RISC-loading complex subunit TARBP2-like [Pongo abelii]
          Length = 369

 Score = 72.4 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E    K    PEY VT  SGP H   FT+   +       G   SK+ A++ AAA++L R
Sbjct: 169 ELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVEHFIE-IGSGTSKKLAKRNAAAKMLLR 227



 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 2/67 (2%)

Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
           +      + +    +   + LQE+   + G TP Y +    G  H P FT  V +     
Sbjct: 15  RLPSIEQMLAANPGKTPISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVTVGD-TS 72

Query: 201 AQGMDCS 207
             G   S
Sbjct: 73  CTGQGPS 79


>gi|224084552|ref|XP_002307335.1| predicted protein [Populus trichocarpa]
 gi|222856784|gb|EEE94331.1| predicted protein [Populus trichocarpa]
          Length = 213

 Score = 72.4 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214
            K+ LQE+A      TP Y+     GP H+P F   V +  +      G   +++AAEQ 
Sbjct: 9   FKSRLQEYAQKAGLPTPVYETIKE-GPSHEPSFRSTVIVKEVRYDSLPGF-FNRKAAEQS 66

Query: 215 AAAEVL 220
           AA   L
Sbjct: 67  AAEVAL 72



 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 24/63 (38%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           K  LQE+A       P Y+      P     F   VEI G+        +K+ AE  AA 
Sbjct: 96  KNLLQEYAQKMNYAIPLYECQKDETPGRGLVFKCTVEIGGIRYIGASAKTKKEAEIKAAR 155

Query: 218 EVL 220
             L
Sbjct: 156 TAL 158


>gi|290760511|gb|ADD59808.1| dsRNA-specific ribonuclease RNase III [Periwinkle leaf yellowing
           phytoplasma]
          Length = 112

 Score = 72.0 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 29/81 (35%), Gaps = 2/81 (2%)

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           LD G   A            L    +  D KT+LQE   ++   T +YK+    GP H  
Sbjct: 1   LDLGYLTAKKVFHNIVLPH-LAKTIYIIDFKTQLQEIVQSEKK-TIQYKIVQEQGPAHSK 58

Query: 188 RFTVVVEISGLAPAQGMDCSK 208
            F   V +       G   +K
Sbjct: 59  NFVAEVYLEKNLLGTGEGSTK 79


>gi|50511733|gb|AAT77419.1| dsRNA-binding protein LH2-o [Brassica napus]
          Length = 277

 Score = 72.0 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 4/69 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214
            K+ LQE+A      TP Y+     GP H   F   V + G+      G   +++AAEQ 
Sbjct: 16  FKSRLQEYAQKYKLPTPIYETVKE-GPSHKSLFQSTVIVDGVRYDSLPGF-FNRKAAEQS 73

Query: 215 AAAEVLKRE 223
           AA   L+  
Sbjct: 74  AAEVALQEL 82



 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 25/63 (39%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           K  LQE+A       P Y+          P+FT  VEI G+        +KR AE  A  
Sbjct: 103 KNLLQEYAQKMNYAIPLYQCQKSETLGRAPQFTCTVEIGGIKYTGAATKTKREAEISAGR 162

Query: 218 EVL 220
             L
Sbjct: 163 TAL 165


>gi|8346542|emb|CAB93934.1| BcpLH protein [Brassica rapa subsp. pekinensis]
 gi|50511731|gb|AAT77418.1| dsRNA-binding protein LH-c [Brassica napus]
          Length = 274

 Score = 72.0 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214
            K+ LQE+A      TP Y+     GP H P F   V ++ +      G   +++AAEQ 
Sbjct: 16  FKSRLQEYAQRYKLPTPLYETIKE-GPSHKPLFQSTVIVNDVRYDSLPGF-FNRKAAEQS 73

Query: 215 AAAEVLKRE 223
           AA   L+  
Sbjct: 74  AAEVALQEL 82



 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 25/63 (39%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           K  LQE+A       P Y+          P+FT  VEI G+        +K+ AE  A  
Sbjct: 103 KNLLQEYAQKMNYAIPLYQCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEAEISAGR 162

Query: 218 EVL 220
             L
Sbjct: 163 TAL 165


>gi|499371|gb|AAA21843.1| RNase III [Escherichia coli]
          Length = 45

 Score = 72.0 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 3/48 (6%)

Query: 1  MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGD 48
          M+ +  + L++++GY F ++ LL++ALTH S S  +    ERLEFLGD
Sbjct: 1  MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKH---NERLEFLGD 45


>gi|50511729|gb|AAT77417.1| dsRNA-binding protein LH2 [Brassica oleracea var. capitata]
          Length = 278

 Score = 72.0 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 4/69 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214
            K+ LQE+A      TP Y+     GP H   F   V + G+      G   +++AAEQ 
Sbjct: 16  FKSRLQEYAQKYKLPTPIYETVKE-GPSHKSLFQSTVIVDGVRYDSLPGF-FNRKAAEQS 73

Query: 215 AAAEVLKRE 223
           AA   L+  
Sbjct: 74  AAEVALQEL 82



 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 25/63 (39%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           K  LQE+A       P Y+          P+FT  VEI G+        +KR AE  A  
Sbjct: 103 KNLLQEYAQKMNYAIPLYQCQKSETLGRAPQFTCTVEIGGIKYTGAATKTKREAEISAGR 162

Query: 218 EVL 220
             L
Sbjct: 163 TAL 165


>gi|115491843|ref|XP_001210549.1| hypothetical protein ATEG_00463 [Aspergillus terreus NIH2624]
 gi|114197409|gb|EAU39109.1| hypothetical protein ATEG_00463 [Aspergillus terreus NIH2624]
          Length = 396

 Score = 72.0 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 51/284 (17%), Positives = 85/284 (29%), Gaps = 69/284 (24%)

Query: 2   SALRYSTLEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
            + + + L  R+ Y  +   L  L ++L  +S   +   + E L  LG  +L    S  L
Sbjct: 82  ESAKLAALHARL-YLPSRLPLETLARSLVDASADPNPNFNNESLATLGHDLLTYYTSEHL 140

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVAREL--------------DLASFIRVSSD--- 102
              +       +     + V  +T + +ARE                L  F RV      
Sbjct: 141 LCTYPRLPLTVVFAAMYAYVGPKTLAAMAREWGVEMAAVPGGEVDPGLLQFQRVVPGTDI 200

Query: 103 ----------LRKDVCSFMTSI----------------------------QADVVESLIA 124
                        D  S+  S+                             A  V +++ 
Sbjct: 201 NAEPASSPTRPNDDRKSWRVSMTSRVVYDNEFGEPPQSRAPSQGVTAEQASATFVRAVMG 260

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR------RDAKTELQEWAHAKFGVTPEYKVT 178
           ++YL  G   A  F ++++  R L   +        RD    L      +    P  K+ 
Sbjct: 261 SIYLHAGRPAAKRFFEQHFLSRHLNISELFNFSQPARD----LSRLCARENFEPPVAKII 316

Query: 179 FRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             +G     P F V +        +G   S   A   AA   LK
Sbjct: 317 SETGRKSRHPVFVVGIYSGQDKLGEGAGASLLEARSRAAVAALK 360


>gi|320581623|gb|EFW95843.1| Mitochondrial ribosomal protein of the large subunit [Pichia
           angusta DL-1]
          Length = 355

 Score = 72.0 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 78/242 (32%), Gaps = 40/242 (16%)

Query: 8   TLEKRIGYAFA-NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
            L  R+  +    +S L +ALT    ++ Y ++++ +   G  +L    +  L   +   
Sbjct: 76  ALHARLNLSPNFKKSTLVRALTSRMKNNDYVDNHQ-MALFGSSMLSYYTTEYLITTYPRL 134

Query: 67  KEGELSVRFNSLVSAETCSQVAREL---------DLASFI-------RVSS--------- 101
             G L    ++ V       VA+ +         +L  ++       R            
Sbjct: 135 PIGILKAATDAFVGDYPLHDVAKNVWGIEEDLSTNLEKYLSKEPKLFRFGRLRYDRQAQE 194

Query: 102 ---DLRKDVCSFMTSI-----QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-- 151
               + K   +  TS+      A+ V +++A ++          F+ ++   R +     
Sbjct: 195 VEAGITKYSITSETSLSTATAYANSVRAIVAGVFAADDERETKDFIYRHILSRNVDISSM 254

Query: 152 -KFRRDAKTELQEWAHAKFGVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKR 209
            +F    K  L      K    P  ++   +G     P F V          +G   S +
Sbjct: 255 FEFEEPGK-LLARLLKTKNMELPTIRLISETGRQSSSPTFIVGCFSGDNLLGEGQGTSLK 313

Query: 210 AA 211
            A
Sbjct: 314 EA 315


>gi|242821621|ref|XP_002487717.1| dsRNA-specific ribonuclease III, putative [Talaromyces stipitatus
           ATCC 10500]
 gi|218712638|gb|EED12063.1| dsRNA-specific ribonuclease III, putative [Talaromyces stipitatus
           ATCC 10500]
          Length = 129

 Score = 72.0 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 65/144 (45%), Gaps = 17/144 (11%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +    LE+ I Y F +R+LL +AL        +Q   +RL  LGD+++ L++    +   
Sbjct: 1   MDCDGLERIIDYTFKDRNLLNEAL--------HQTQNKRLALLGDKVVALMLIDSWYQTG 52

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            S  +G   ++  +  S E  +  A +  L   +R     R+   S  T   A   E+++
Sbjct: 53  GSCYDGNSLLQHAA--SNEAMANRAIQTHLKDMVR-----RQSHQSPSTHGLATDFEAVV 105

Query: 124 AALYLDGG--IEVAGTFVDKYWKQ 145
            A+++D G  ++     + + + +
Sbjct: 106 GAVWIDCGKDLQTLEKVIRQLYVE 129


>gi|302142076|emb|CBI19279.3| unnamed protein product [Vitis vinifera]
          Length = 415

 Score = 72.0 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214
            K+ LQE+A      TP Y      GP H P F   V ++ +      G   +++AAEQ 
Sbjct: 16  FKSRLQEYAQKVGLPTPLYDTIKE-GPPHVPSFKSTVIVNDVRYDSLPGF-SNRKAAEQS 73

Query: 215 AAAEVL 220
           AA   L
Sbjct: 74  AAEVAL 79



 Score = 64.7 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 24/63 (38%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           K  LQE+A       P Y       P     F+  VEI G+        +K+ AE  AA 
Sbjct: 103 KNLLQEYAQKMNYAIPMYVCQKDESPGRAASFSCTVEIGGIRYIGAAARTKKEAEIKAAR 162

Query: 218 EVL 220
             L
Sbjct: 163 TAL 165


>gi|225459069|ref|XP_002285663.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|147781065|emb|CAN68128.1| hypothetical protein VITISV_043706 [Vitis vinifera]
          Length = 400

 Score = 72.0 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214
            K+ LQE+A      TP Y      GP H P F   V ++ +      G   +++AAEQ 
Sbjct: 16  FKSRLQEYAQKVGLPTPLYDTIKE-GPPHVPSFKSTVIVNDVRYDSLPGF-SNRKAAEQS 73

Query: 215 AAAEVL 220
           AA   L
Sbjct: 74  AAEVAL 79



 Score = 64.7 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 24/63 (38%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           K  LQE+A       P Y       P     F+  VEI G+        +K+ AE  AA 
Sbjct: 103 KNLLQEYAQKMNYAIPMYVCQKDESPGRAASFSCTVEIGGIRYIGAAARTKKEAEIKAAR 162

Query: 218 EVL 220
             L
Sbjct: 163 TAL 165


>gi|290760516|gb|ADD59812.1| dsRNA-specific ribonuclease RNase III [Paulownia witches'-broom
           phytoplasma]
          Length = 112

 Score = 72.0 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 29/81 (35%), Gaps = 2/81 (2%)

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           LD G   A            L    +  D KT+LQE   ++     +YK+    GP H  
Sbjct: 1   LDLGYLTAKKVFHNIVLPH-LAKTIYIIDFKTQLQEIVQSEKKA-IQYKIVQEQGPAHSK 58

Query: 188 RFTVVVEISGLAPAQGMDCSK 208
           +F   V +       G   +K
Sbjct: 59  KFVAEVYLEKNLLGTGEGSTK 79


>gi|308162643|gb|EFO65028.1| Dicer [Giardia lamblia P15]
          Length = 754

 Score = 72.0 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 51/129 (39%), Gaps = 10/129 (7%)

Query: 20  RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
             LL+ ALT           Y++LE LGD  L   ++  L     +  EG L+    S  
Sbjct: 633 IQLLQLALT--------PHVYQKLELLGDAFLKCNLAFHLHVLHPTLTEGTLTRMRQSAE 684

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
           +     ++ R     S +              + +  D  E+++AA+ L  G E A +FV
Sbjct: 685 TNCVLGKLIRR--FPSIVDKVITESHPKIQSDSKVYGDTFEAILAAVLLACGEEAASSFV 742

Query: 140 DKYWKQRAL 148
            ++   + +
Sbjct: 743 REFVLPQVV 751



 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 6/111 (5%)

Query: 32  ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91
              S+   ++RLE LGD +LG +++  L   F +A  G L      LV  ET + + + L
Sbjct: 324 FGVSHTNVFQRLELLGDAVLGFVVTARLLCLFPNASVGTLVDLKMELVRNETLNYLVQML 383

Query: 92  DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD-GGIEVAGTFVDK 141
            L      S  L        +   AD+ E L+ +++    GI     F+ K
Sbjct: 384 RLPQLAEFSGTLMA-----KSKTWADMYEELVGSVFTGPNGIYGCEEFLAK 429


>gi|255946916|ref|XP_002564225.1| Pc22g01810 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211591242|emb|CAP97469.1| Pc22g01810 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 151

 Score = 72.0 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 8/131 (6%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
               LEK+I Y F +R LL +AL  +S +   Q+  + L   GD +L L+++  +    +
Sbjct: 14  EIEVLEKKIQYRFVDRELLREAL-QAS-TDRNQDGNKTLALFGDLVLDLVLA--ISGRKE 69

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +   G++             S+   +L +  FI  +            ++ A  +E+++ 
Sbjct: 70  NKPRGKIKEMSTQKAGNVHLSKQGFDLGIDKFIVKNPSQTVVGI----NVMATTMEAIVG 125

Query: 125 ALYLDGGIEVA 135
           A+YLD   ++A
Sbjct: 126 AVYLDCNKQIA 136


>gi|158301486|ref|XP_321167.4| AGAP001898-PA [Anopheles gambiae str. PEST]
 gi|157012494|gb|EAA01591.4| AGAP001898-PA [Anopheles gambiae str. PEST]
          Length = 329

 Score = 71.6 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 79/237 (33%), Gaps = 35/237 (14%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQE---------------SYERLEFLGDRILGLLI 55
           KR+  +F + ++L++A TH S                          L   G++++   +
Sbjct: 68  KRLQESF-DANVLQQAFTHQSFIEQETRKQAAVGIEQPVLGVHDNRELIAQGEQLVAEYV 126

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
              L           ++    +L S    + V+  L     I  +     D      ++ 
Sbjct: 127 EAFLLTALPRLPRQFIASVREALTSEAQLAHVSSHLGTKDIIMAAEFPIDD------TLL 180

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYW----KQRALKSGKFRRDAKTELQEWAHAKFGV 171
           A  +++++AAL    G E    FV  +      QR L       D    LQE+   +   
Sbjct: 181 ASTLKAIVAALQRSSGDERCFLFVRDFLCGQLNQRDLYEYLEIADPLRTLQEYCKERGLA 240

Query: 172 TPEYKVTFRSG-----PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            PE ++    G       H     V +         G   S+  A + AA + L++ 
Sbjct: 241 DPEPRLIGNVGRNTLLAAHQ----VGIYSDRKLLGTGYGESQTVAVEEAARDCLRQL 293


>gi|304307737|ref|NP_001182008.1| loquacious [Bombyx mori]
 gi|300669735|dbj|BAJ11656.1| loquacious [Bombyx mori]
          Length = 382

 Score = 71.6 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             + LQE   A+    P+Y++    G  H+P F   V ++ L  A G   SK+ A+  AA
Sbjct: 74  PVSVLQELL-ARRETVPKYELLQIEGMIHEPTFRYRVTVADL-FAMGTGRSKKEAKHSAA 131

Query: 217 AEVLKRE 223
             +L + 
Sbjct: 132 KALLDKL 138



 Score = 40.1 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            H+ +FT++  +       G   SK+ A++ AA ++ +  
Sbjct: 204 PHERQFTIICTLL-KRREVGTGKSKKLAKRQAAYKMWQAL 242


>gi|291238580|ref|XP_002739212.1| PREDICTED: Probable RISC-loading complex subunit
           BRAFLDRAFT_242885-like [Saccoglossus kowalevskii]
          Length = 315

 Score = 71.6 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
                +   +LQE   A+    P+Y      GP H   F +   +      QG   SK+ 
Sbjct: 104 DGIPGNPVGQLQELVVARHWRRPDYIQISECGPPHSREFIIACRVHSFQE-QGKGRSKKI 162

Query: 211 AEQVAAAEVLKR 222
           A++ AA  +L+R
Sbjct: 163 AKRAAAWAMLQR 174



 Score = 71.6 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             + LQE    +   TP Y +    G  H P+F   V + G   A G   SK+ A+  AA
Sbjct: 11  PISILQELCTKRSL-TPIYDLIACEGAAHQPKFVYRVTV-GEHTANGDGTSKKQAKHNAA 68

Query: 217 AEVLKREGI 225
             VL++  +
Sbjct: 69  ENVLEQFNV 77


>gi|148681491|gb|EDL13438.1| mCG2026 [Mus musculus]
          Length = 221

 Score = 71.6 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           QE    K    PEY VT  SGP H   FT+   +       G   SK+ A++ AA ++L 
Sbjct: 20  QELVVQKGWRLPEYMVTQESGPAHRKEFTMTCRVE-RFIEIGSGTSKKLAKRNAAVKMLL 78

Query: 222 R 222
           R
Sbjct: 79  R 79


>gi|149060895|gb|EDM11505.1| rCG30397, isoform CRA_a [Rattus norvegicus]
          Length = 408

 Score = 71.6 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 5/96 (5%)

Query: 132 IEVAGTFVDKYWKQRALKSGK---FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           IE    F  K   +  +K+G       +  + L +   A+    P+Y +    G      
Sbjct: 177 IEKPKLFFKKR-PKTIIKAGPEYGQGMNPISRLAQIQQARKEKEPDYVLLSERGMPRRRE 235

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           F + V++ G   A G   +K+ A++ AA  +L + G
Sbjct: 236 FVMQVKV-GNEVATGTGPNKKIAKKNAAEAMLLQLG 270



 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 110 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 167

Query: 223 E 223
            
Sbjct: 168 L 168



 Score = 37.4 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 40  KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 75


>gi|55741784|ref|NP_001007151.1| double-stranded RNA-binding protein Staufen homolog 2 isoform SS
           [Rattus norvegicus]
 gi|47679379|gb|AAT36670.1| staufen2 spliceform SS [Rattus norvegicus]
 gi|52001197|gb|AAU21479.1| double-stranded RNA binding protein staufen 2 52 kDa isoform
           [Rattus norvegicus]
          Length = 480

 Score = 71.6 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 5/96 (5%)

Query: 132 IEVAGTFVDKYWKQRALKSGK---FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           IE    F  K   +  +K+G       +  + L +   A+    P+Y +    G      
Sbjct: 249 IEKPKLFFKKR-PKTIIKAGPEYGQGMNPISRLAQIQQARKEKEPDYVLLSERGMPRRRE 307

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           F + V++ G   A G   +K+ A++ AA  +L + G
Sbjct: 308 FVMQVKV-GNEVATGTGPNKKIAKKNAAEAMLLQLG 342



 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 182 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 239

Query: 223 E 223
            
Sbjct: 240 L 240



 Score = 37.4 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 112 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 147


>gi|47679381|gb|AAT36671.1| staufen2 spliceform SL [Rattus norvegicus]
 gi|52001195|gb|AAU21478.1| double-stranded RNA binding protein staufen 2 59 kDa isoform
           [Rattus norvegicus]
          Length = 539

 Score = 71.6 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 5/96 (5%)

Query: 132 IEVAGTFVDKYWKQRALKSGK---FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           IE    F  K   +  +K+G       +  + L +   A+    P+Y +    G      
Sbjct: 249 IEKPKLFFKKR-PKTIIKAGPEYGQGMNPISRLAQIQQARKEKEPDYVLLSERGMPRRRE 307

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           F + V++ G   A G   +K+ A++ AA  +L + G
Sbjct: 308 FVMQVKV-GNEVATGTGPNKKIAKKNAAEAMLLQLG 342



 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 182 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 239

Query: 223 E 223
            
Sbjct: 240 L 240



 Score = 37.4 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 112 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 147


>gi|51592098|ref|NP_604461.2| double-stranded RNA-binding protein Staufen homolog 2 isoform LS
           (B) [Rattus norvegicus]
 gi|47679383|gb|AAT36672.1| staufen2 spliceform LS [Rattus norvegicus]
 gi|55715910|gb|AAH85705.1| Stau2 protein [Rattus norvegicus]
          Length = 512

 Score = 71.6 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 5/96 (5%)

Query: 132 IEVAGTFVDKYWKQRALKSGK---FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           IE    F  K   +  +K+G       +  + L +   A+    P+Y +    G      
Sbjct: 281 IEKPKLFFKKR-PKTIIKAGPEYGQGMNPISRLAQIQQARKEKEPDYVLLSERGMPRRRE 339

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           F + V++ G   A G   +K+ A++ AA  +L + G
Sbjct: 340 FVMQVKV-GNEVATGTGPNKKIAKKNAAEAMLLQLG 374



 Score = 58.9 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             + P+YK+   SGP H   F+V + +           S + A+Q  A + L
Sbjct: 20  HSIQPQYKLLNESGPAHSKMFSVQLSLGEQTWES-EGSSIKKAQQAVANKAL 70



 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 214 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 271

Query: 223 E 223
            
Sbjct: 272 L 272



 Score = 37.4 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 144 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 179


>gi|255944467|ref|XP_002563001.1| Pc20g04580 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211587736|emb|CAP85787.1| Pc20g04580 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 151

 Score = 71.6 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 10/125 (8%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           + LE  IGY F +RSLLE+AL     +    E  ERL  LGD++L L++    +   ++ 
Sbjct: 3   AELESLIGYQFHDRSLLEEALE---EAGPQTEGNERLALLGDKVLSLMLLHRWYMEGNTT 59

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT-SIQADVVESLIAA 125
           ++G  +         +     AR LD   F+      R D+   +     A  V++++ A
Sbjct: 60  EQG--TNLLQIYAGNKHLISRARALDFPKFVI----QRLDIKRSVPDHTLATTVKAILGA 113

Query: 126 LYLDG 130
           ++LD 
Sbjct: 114 VWLDS 118


>gi|326507276|dbj|BAJ95715.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 580

 Score = 71.6 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 6/73 (8%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215
            K  LQE AH      P Y    RSGP H P FT  VE++G     G    +K+ A++ A
Sbjct: 88  YKNLLQETAHRAGLKLPMYTTI-RSGPGHTPTFTCTVELAGR-IFTGSPGKTKKQAQKNA 145

Query: 216 AAEV---LKREGI 225
           A      LK+  +
Sbjct: 146 AMAAWSELKQLPL 158



 Score = 65.1 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVA 215
            K +LQE A       P Y    R GPDH PRF   V  +G +    G   + R AE  A
Sbjct: 2   FKNQLQELAQRSCFNLPSYACI-REGPDHAPRFKATVTFNGESFESPGFYSTLRQAEHAA 60

Query: 216 AAEVLKRE 223
           A   L   
Sbjct: 61  AEVALNEL 68


>gi|73919460|sp|Q68SB1|STAU2_RAT RecName: Full=Double-stranded RNA-binding protein Staufen homolog
           2; Short=r-staufen protein
 gi|47679385|gb|AAT36673.1| staufen2 spliceform LL [Rattus norvegicus]
          Length = 571

 Score = 71.6 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 5/96 (5%)

Query: 132 IEVAGTFVDKYWKQRALKSGK---FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           IE    F  K   +  +K+G       +  + L +   A+    P+Y +    G      
Sbjct: 281 IEKPKLFFKKR-PKTIIKAGPEYGQGMNPISRLAQIQQARKEKEPDYVLLSERGMPRRRE 339

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           F + V++ G   A G   +K+ A++ AA  +L + G
Sbjct: 340 FVMQVKV-GNEVATGTGPNKKIAKKNAAEAMLLQLG 374



 Score = 58.9 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             + P+YK+   SGP H   F+V + +           S + A+Q  A + L
Sbjct: 20  HSIQPQYKLLNESGPAHSKMFSVQLSLGEQTWES-EGSSIKKAQQAVANKAL 70



 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 214 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 271

Query: 223 E 223
            
Sbjct: 272 L 272



 Score = 37.4 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 144 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 179


>gi|6730350|pdb|1DI2|A Chain A, Crystal Structure Of A Dsrna-Binding Domain Complexed With
           Dsrna: Molecular Basis Of Double-Stranded Rna-Protein
           Interactions
 gi|6730351|pdb|1DI2|B Chain B, Crystal Structure Of A Dsrna-Binding Domain Complexed With
           Dsrna: Molecular Basis Of Double-Stranded Rna-Protein
           Interactions
          Length = 69

 Score = 71.6 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            LQE A  K    PEY V   SGP H   FT+   +       G   SK+ A++VAA ++
Sbjct: 5   SLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVE-TGSGTSKQVAKRVAAEKL 63

Query: 220 LKR 222
           L +
Sbjct: 64  LTK 66


>gi|27262829|emb|CAD59423.1| dsRNA-binding protein [Brassica rapa subsp. rapa]
          Length = 275

 Score = 71.6 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214
            K+ LQE+A      TP Y+     GP H P F   V ++ +      G   +++AAEQ 
Sbjct: 16  FKSRLQEYAQRYKLPTPLYETIKE-GPSHKPLFQSTVIVNDVRYDSLPGF-FNRKAAEQS 73

Query: 215 AAAEVLKRE 223
           AA   L+  
Sbjct: 74  AAEVALQEL 82



 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 25/63 (39%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           K  LQE+A       P Y+          P+FT  VEI G+        +K+ AE  A  
Sbjct: 103 KNLLQEYAQKMNYAIPLYQCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEAEISAGR 162

Query: 218 EVL 220
             L
Sbjct: 163 TAL 165


>gi|148228849|ref|NP_001080784.1| staufen, RNA binding protein, homolog 2 [Xenopus laevis]
 gi|28302215|gb|AAH46732.1| Stau2-a protein [Xenopus laevis]
          Length = 685

 Score = 71.6 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 3/95 (3%)

Query: 132 IEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
           IE    ++ +  K     S ++ +  +  + L +   AK    PEY +    G      F
Sbjct: 363 IEKPRIYIKRRPKNIIKASPEYGQGMNPISRLAQIQQAKKEKEPEYVLLSERGIQRRREF 422

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            + V++ G   A G   +K+ A++ AA  +L + G
Sbjct: 423 IMQVKV-GEETATGTGPNKKIAKRNAAEAMLLQLG 456



 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             + P+YK+    GP H   FTV + +      Q    S + ++  AA+  L
Sbjct: 102 NRIQPQYKLLDERGPAHSKLFTVQLTLGEQTW-QAESTSIKKSQHAAASLAL 152



 Score = 42.0 bits (98), Expect = 0.065,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 2/45 (4%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           E +  +      ++V   SGP H   F   V + G   A+G   S
Sbjct: 296 EISLKRNLPL-SFEVIKESGPPHMKSFVTKVTV-GEFTAEGEGNS 338


>gi|27262835|emb|CAD59426.1| dsRNA-binding protein [Brassica oleracea var. gongylodes]
 gi|27262839|emb|CAD59428.1| dsRNA-binding protein [Brassica oleracea var. gemmifera]
          Length = 283

 Score = 71.3 bits (174), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214
            K+ LQE+A      TP Y+     GP H P F   V ++ +      G   +++AAEQ 
Sbjct: 16  FKSRLQEYAQRYKLPTPLYEAIKE-GPSHKPLFQSTVIVNDVRYDSLPGF-FNRKAAEQS 73

Query: 215 AAAEVLKRE 223
           AA   L+  
Sbjct: 74  AAEVALQEL 82



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 25/63 (39%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           K  LQE+A       P Y+          P+FT  VEI G+        +K+ AE  A  
Sbjct: 103 KNLLQEYAQKMNYAIPLYQCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEAEISAGR 162

Query: 218 EVL 220
             L
Sbjct: 163 TAL 165


>gi|27262837|emb|CAD59427.1| dsRNA-binding protein [Brassica oleracea var. italica]
          Length = 283

 Score = 71.3 bits (174), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214
            K+ LQE+A      TP Y+     GP H P F   V ++ +      G   +++AAEQ 
Sbjct: 16  FKSRLQEYAQRYKLPTPLYEAIKE-GPSHKPLFQSTVIVNDVRYDSLPGF-FNRKAAEQS 73

Query: 215 AAAEVLKRE 223
           AA   L+  
Sbjct: 74  AAEVALQEL 82



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 25/63 (39%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           K  LQE+A       P Y+          P+FT  VEI G+        +K+ AE  A  
Sbjct: 103 KNLLQEYAQKMNYAIPLYQCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEAEISAGR 162

Query: 218 EVL 220
             L
Sbjct: 163 TAL 165


>gi|27262831|emb|CAD59424.1| dsRNA-binding protein [Brassica oleracea var. acephala]
          Length = 283

 Score = 71.3 bits (174), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214
            K+ LQE+A      TP Y+     GP H P F   V ++ +      G   +++AAEQ 
Sbjct: 16  FKSRLQEYAQRYKLPTPLYEAIKE-GPSHKPLFQSTVIVNDVRYDSLPGF-FNRKAAEQS 73

Query: 215 AAAEVLKRE 223
           AA   L+  
Sbjct: 74  AAEVALQEL 82



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 25/63 (39%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           K  LQE+A       P Y+          P+FT  VEI G+        +K+ AE  A  
Sbjct: 103 KNLLQEYAQKMNYAIPLYQCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEAEISAGR 162

Query: 218 EVL 220
             L
Sbjct: 163 TAL 165


>gi|149060896|gb|EDM11506.1| rCG30397, isoform CRA_b [Rattus norvegicus]
 gi|149060897|gb|EDM11507.1| rCG30397, isoform CRA_b [Rattus norvegicus]
 gi|149060898|gb|EDM11508.1| rCG30397, isoform CRA_b [Rattus norvegicus]
 gi|149060899|gb|EDM11509.1| rCG30397, isoform CRA_b [Rattus norvegicus]
          Length = 467

 Score = 71.3 bits (174), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 5/96 (5%)

Query: 132 IEVAGTFVDKYWKQRALKSGK---FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           IE    F  K   +  +K+G       +  + L +   A+    P+Y +    G      
Sbjct: 177 IEKPKLFFKKR-PKTIIKAGPEYGQGMNPISRLAQIQQARKEKEPDYVLLSERGMPRRRE 235

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           F + V++ G   A G   +K+ A++ AA  +L + G
Sbjct: 236 FVMQVKV-GNEVATGTGPNKKIAKKNAAEAMLLQLG 270



 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 110 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 167

Query: 223 E 223
            
Sbjct: 168 L 168



 Score = 37.4 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 40  KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 75


>gi|149060900|gb|EDM11510.1| rCG30397, isoform CRA_c [Rattus norvegicus]
          Length = 224

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   A+    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 18  MNPISRLAQIQQARKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 76

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 77  AAEAMLLQLG 86


>gi|242054547|ref|XP_002456419.1| hypothetical protein SORBIDRAFT_03g035960 [Sorghum bicolor]
 gi|241928394|gb|EES01539.1| hypothetical protein SORBIDRAFT_03g035960 [Sorghum bicolor]
          Length = 448

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 5/70 (7%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGMDCSKRAAEQ 213
            K+ LQE    +    P Y+ T R GP H P F   V ++G + +   +G   S + A  
Sbjct: 2   YKSRLQELCQKRRWAPPVYEPT-REGPAHTPLFRATVVVNGESFSSPDEGE-RSVKEACN 59

Query: 214 VAAAEVLKRE 223
           +AA    +  
Sbjct: 60  LAAMAAFENL 69



 Score = 58.9 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 5/67 (7%)

Query: 157 AKTELQEWAHAKFGVTPEYKVT-FRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQV 214
            K  LQE+   +    P Y  T   S  ++   F   VEI G A  +G    +K+ AE  
Sbjct: 177 YKNLLQEFVQKEGFPLPTYDTTLDVS--NYSAAFISTVEIQG-ATFRGEPGNTKKQAEMN 233

Query: 215 AAAEVLK 221
           AA    +
Sbjct: 234 AAKIAFQ 240



 Score = 58.2 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 10/69 (14%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-----APAQGMDCSKRAA 211
            K +LQE+A  +  + P Y+     G    P F   V I G              + + A
Sbjct: 94  YKNQLQEYAQKRGKLLPSYRPIH-GGSLRAPLFKSEVTIDGQTFESPEYC----RTMKEA 148

Query: 212 EQVAAAEVL 220
           E  AA   L
Sbjct: 149 ETAAAKVAL 157


>gi|269115408|gb|ACZ26274.1| dicer-1-like protein [Mayetiola destructor]
          Length = 227

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 2/96 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSI-SHSYQESYERLEFLGDRILGLLISTLLFNH-F 63
           Y  +EK++ Y F ++S + +A +H S  ++    +Y+ L+F+GD I+  L+   LF    
Sbjct: 8   YEQIEKKLNYTFRDKSFMLQAFSHESFTANDICPNYDSLDFVGDGIINYLLCRHLFREAG 67

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99
                 E+    N+L S    + V+    + +F R+
Sbjct: 68  GQFSANEIEFFTNTLKSNCCFATVSIRHGIHNFFRL 103


>gi|328766294|gb|EGF76349.1| hypothetical protein BATDEDRAFT_92769 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 334

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 87/240 (36%), Gaps = 53/240 (22%)

Query: 31  SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90
           S +      ++RLEFLGD +L  L    L+        G LS     LV  +  + V+ +
Sbjct: 6   SGTGKLGSMFQRLEFLGDAVLSYLAMQHLYKITPPLNPGGLSKLRAELVCNQFLACVSIQ 65

Query: 91  LDLASFIRVSSD-LRKDVCSFMTSIQ---------------------------------- 115
           + L  +IR +   +   +  F T +Q                                  
Sbjct: 66  IGLVKYIRHTDMTMEAAIGRFATWVQGYLASESSTSLPISTSATQIASARMFWNKGNTAP 125

Query: 116 ---ADVVESLIAALYLDGGIEVAG-------TFVDKYWKQRALKSGKFRR---DAKTELQ 162
               DV ES++ A+++D   ++         T +  +W +     G       +   EL+
Sbjct: 126 KTAGDVYESMLGAVFVDSQFDIHCVQSMFDITVISPWWWRFTSLFGGESMIYENPVAELR 185

Query: 163 EWAHAKFG-VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             +++ F  V  +Y  T+  G  H    T  +    +  AQ +   +R A++ AA   ++
Sbjct: 186 TLSYSLFKCVKIDY--TYEYGL-HGGT-TATITYHNMVLAQCLGTGQRDAKKAAACTAVE 241


>gi|155573864|gb|ABU24344.1| dsRNA-activated protein kinase R [Salmo salar]
          Length = 713

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 156 DAKTELQEWAHAKFGV-TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +  ++L E+A  +  +   +++     GPDH   FT+ V I G A   G+  +K+ A++ 
Sbjct: 5   NYISKLFEYAQRQGQISDIKFEEVGTDGPDHLKTFTLRVVIKGHAYPNGVGKTKKEAKRN 64

Query: 215 AAAEVL 220
           AA   L
Sbjct: 65  AAKHAL 70



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           +         ++K+  +SGP H+P+F   V I       G+  + + A+Q AA   
Sbjct: 239 YCQKTKRFL-DFKLVEKSGPSHNPQFVYKVLIDKREYPDGLGKTAKEAKQQAAQLA 293



 Score = 35.8 bits (82), Expect = 4.8,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 12/68 (17%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTF--RSGPDHDPRFTVVV---EISGLAPAQGMDCSKRAA 211
             + L E +          K     R GP++    T       +      +G   +K+ A
Sbjct: 107 YVSWLNEHSQKNKLSL---KALEGARVGPNN----TSQCCRYVVGEKEYPEGFGNTKKEA 159

Query: 212 EQVAAAEV 219
           ++ AA +V
Sbjct: 160 KEEAAMQV 167


>gi|328769566|gb|EGF79610.1| hypothetical protein BATDEDRAFT_26082 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 334

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 85/240 (35%), Gaps = 53/240 (22%)

Query: 31  SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90
           S +      ++RLEFLGD +L  L    L+        G LS     LV  +  + V+ +
Sbjct: 6   SGTGKLGSIFQRLEFLGDAVLSYLAMQHLYKITPPLNPGGLSKLRAELVCNQFLACVSIQ 65

Query: 91  LDLASFIRV--------------------------------------SSDLRKDVCSFMT 112
           + L  +IR                                       S+ L  +  +   
Sbjct: 66  IGLVKYIRHTDMTMEAAIGRFTAWVQGYLASESSTSLPISTSATQIASARLFWNKGNTAP 125

Query: 113 SIQADVVESLIAALYLDGGIEVAG-------TFVDKYWKQRALKSGKFRR---DAKTELQ 162
               DV ES++ A+++D   ++         T +  +W +     G       +   EL+
Sbjct: 126 KTAGDVYESMLGAVFVDSQFDIHCVQSMFDITVISPWWWRFTSLFGGESMIYENPVAELR 185

Query: 163 EWAHAKFG-VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             +++ F  V  +Y  T+  G  H    T  +    +  AQ +   +R A++ AA   +K
Sbjct: 186 TLSYSLFKCVKIDY--TYEYGL-HGGT-TATITYHNMVLAQCLGTGQRDAKKAAACTAVK 241


>gi|19526446|gb|AAL89719.1|AF483621_1 RNA-binding protein staufen splice form B [Rattus norvegicus]
          Length = 512

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 5/96 (5%)

Query: 132 IEVAGTFVDKYWKQRALKSGK---FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           IE    F  K   +  +K+G       +  + L +   A+    P+Y +    G     +
Sbjct: 281 IEKPKLFFKKR-PKTIIKAGPEYGQGMNPISRLAQIQQARKEKEPDYVLLSERGMPRRRK 339

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           F + V++ G   A G   +K+ A++ AA  +L + G
Sbjct: 340 FVMQVKV-GNEVATGTGPNKKIAKKNAAEAMLLQLG 374



 Score = 58.9 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             + P+YK+   SGP H   F+V + +           S + A+Q  A + L
Sbjct: 20  HSIQPQYKLLNESGPAHSKMFSVQLSLGEQTWES-EGSSIKKAQQAVANKAL 70



 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 214 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 271

Query: 223 E 223
            
Sbjct: 272 L 272



 Score = 37.4 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 144 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 179


>gi|296089027|emb|CBI38730.3| unnamed protein product [Vitis vinifera]
          Length = 1474

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 3/91 (3%)

Query: 8    TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
             L+  I Y      +L +ALT +S   ++   YER E LGD  L  ++S  LF  +    
Sbjct: 1357 QLKDVINYPVPAAKIL-EALTAASCQETF--CYERAELLGDAYLKWVVSRFLFLKYPQKH 1413

Query: 68   EGELSVRFNSLVSAETCSQVARELDLASFIR 98
            EG+L+     +VS     Q A    L S+I+
Sbjct: 1414 EGQLTRMRQQMVSNMVLYQSALCKGLQSYIQ 1444


>gi|322511163|gb|ADX06476.1| hypothetical protein 162276054 [Organic Lake phycodnavirus 2]
          Length = 165

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 52/155 (33%), Gaps = 39/155 (25%)

Query: 104 RKDVCSFMTSIQADVVESLIAALYLD------------GGIEVAGTFVDKYWKQRALKSG 151
           R+            + ES + AL+LD             G      F++  +      + 
Sbjct: 9   RRKKNRCNYKKLGCLFESFLGALFLDTNETKDETFLMGNGTHYCQLFIENVYNALVDWNE 68

Query: 152 KFRRD--AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI-------------- 195
               D   K   Q     +F  TPEYK+  +   D + R+T+ V +              
Sbjct: 69  ILENDDNYKNIFQVKIQKEFKCTPEYKIIHQ---DEELRYTMGVYLCLGNDNCVSFDLLK 125

Query: 196 --------SGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                   + +    G+   K+ AEQ+A  + LK+
Sbjct: 126 SLDNIKSSNNIHFGTGVHKIKKKAEQLACLDALKK 160


>gi|242760076|ref|XP_002339915.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
 gi|218723111|gb|EED22528.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
          Length = 129

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 64/142 (45%), Gaps = 17/142 (11%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           +  +++E  IGY F +R LL KAL        +Q   +RL  LGD+++ L++    +   
Sbjct: 1   MDCNSVEGIIGYTFNDRELLAKAL--------HQTQNKRLALLGDKVVALVLIDSWYQTG 52

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI 123
            S   G   ++ ++  S E  +    +  L   + ++S   + +        A   E+++
Sbjct: 53  TSCSAGSSLLQHSA--SNEAMAHQEDKTHLKDTVCLNSHQAQSIHG-----LATNFEAVV 105

Query: 124 AALYLDGG--IEVAGTFVDKYW 143
            A+++D G  ++     + + +
Sbjct: 106 GAVWIDCGKDLQTLEKVIRQLY 127


>gi|321253833|ref|XP_003192867.1| hypothetical protein CGB_C5530W [Cryptococcus gattii WM276]
 gi|317459336|gb|ADV21080.1| hypothetical protein CNC03670 [Cryptococcus gattii WM276]
          Length = 916

 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 61/158 (38%), Gaps = 34/158 (21%)

Query: 19  NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR---- 74
           +  L  +ALT  S  +    +YERLE LGD +L   I+  ++ H   A   E S++    
Sbjct: 444 HPELALQALTAPSSVNVTPWTYERLEILGDTLLKFFITIHVYLHGGGANSREDSLKVWQD 503

Query: 75  FNSLVSAETCSQVARELDLASFIRVSS-----------DLRKDVC--------------- 108
            + LVS  T +  A +L L  ++R              +L                    
Sbjct: 504 RHKLVSNRTLTANAIKLGLVDYVRDKRLKVKDWIPRDWELEVSTGQTVPKKAVQTSHDGP 563

Query: 109 ---SFMTSIQADVVESLIAALY-LDGGIEVAGTFVDKY 142
                   + AD+VE++I A Y +D   +   + + + 
Sbjct: 564 EIRRLGDKLLADIVEAIIGASYGMDKDFDNVISTLIRL 601



 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 76/262 (29%), Gaps = 56/262 (21%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHS-----YQESYERLEFLGDRILGLLISTLL 59
             ST E  +GY F ++      +   S+S+       +E+Y+ L   G+ +L L +  LL
Sbjct: 639 SLSTFE-VLGYKFKSKKRYNDVI---SMSNQPDAKRIRENYKML---GNAVLDLHVIELL 691

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS------------------- 100
              +     G LS       +      +A EL L   ++                     
Sbjct: 692 LAKYPEEGPGSLSNMKTFRTTEGLRCALATELGLQDLLKDGDERAERELGRATYFMRDAK 751

Query: 101 --------SDLRKDVCSFMTSIQADVV-----ESLIAALYLDGGI--EVAGTFVDKYWKQ 145
                   S   +    +  ++  +       E +  A++ D G   E      D +   
Sbjct: 752 AQADAAGLSGDEQGGIHYWDNVAVNHFTGSVIEVIYGAIFQDSGFSLEHTQRIFDDHIVP 811

Query: 146 RALK----SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201
              K            K  L  W  AK      Y      GP        VV       A
Sbjct: 812 FTEKYCKGPSATDLHPKGLLTRWMQAKGCA---YWKLDAVGP---KLCEGVVTCHDQDVA 865

Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223
           +    +   A +    E +KR 
Sbjct: 866 RCKAFTTHMAVRNVCEEAIKRL 887


>gi|321448873|gb|EFX61617.1| hypothetical protein DAPPUDRAFT_272455 [Daphnia pulex]
          Length = 177

 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            E+  GY F +  +L +AL   + S  S  +  +RLE +GD +L L++    F    + +
Sbjct: 26  FEEIFGYKFKDEEMLHQALKRPTASLKSSVKKGDRLELVGDAVLDLIMIEECFERHVNYE 85

Query: 68  EGELSVRFNSLVSAETCSQVARELD 92
            G+LS     L   +T ++ A E+ 
Sbjct: 86  AGQLSGVKCELTCNDTLARKAEEIQ 110



 Score = 63.2 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/46 (50%), Positives = 28/46 (60%), Gaps = 3/46 (6%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRIL 51
              LE  + Y+F NR LL+ ALTH   S     +YERLEFLGD +L
Sbjct: 135 IDKLESILNYSFKNRGLLKGALTHRYFS---ALNYERLEFLGDIVL 177


>gi|256419005|ref|NP_001157857.1| double-stranded RNA-binding protein Staufen homolog 2 isoform f
           [Homo sapiens]
          Length = 473

 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 268 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 326

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 327 AAEAMLLQLG 336



 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 176 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 233

Query: 223 E 223
            
Sbjct: 234 L 234



 Score = 37.4 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 106 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 141


>gi|256418993|ref|NP_055208.2| double-stranded RNA-binding protein Staufen homolog 2 isoform e
           [Homo sapiens]
 gi|256419003|ref|NP_001157856.1| double-stranded RNA-binding protein Staufen homolog 2 isoform e
           [Homo sapiens]
 gi|168270864|dbj|BAG10225.1| double-stranded RNA-binding protein Staufen homolog 2 [synthetic
           construct]
          Length = 479

 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 333 AAEAMLLQLG 342



 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 182 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 239

Query: 223 E 223
            
Sbjct: 240 L 240



 Score = 37.4 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 112 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 147


>gi|119607409|gb|EAW87003.1| staufen, RNA binding protein, homolog 2 (Drosophila), isoform CRA_a
           [Homo sapiens]
          Length = 549

 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 306 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 364

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 365 AAEAMLLQLG 374



 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             V P+YK+    GP H   F+V + +           S + A+Q  A + L
Sbjct: 20  NRVQPQYKLLNERGPAHSKMFSVQLSLGEQTWES-EGSSIKKAQQAVANKAL 70



 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 214 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 271

Query: 223 E 223
            
Sbjct: 272 L 272



 Score = 37.4 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 144 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 179


>gi|114620492|ref|XP_001165189.1| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]
          Length = 517

 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 333 AAEAMLLQLG 342



 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 182 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 239

Query: 223 E 223
            
Sbjct: 240 L 240



 Score = 37.4 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 112 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 147


>gi|114620500|ref|XP_001165533.1| PREDICTED: hypothetical protein isoform 5 [Pan troglodytes]
 gi|114620502|ref|XP_001165569.1| PREDICTED: hypothetical protein isoform 6 [Pan troglodytes]
 gi|114620504|ref|XP_001165598.1| PREDICTED: hypothetical protein isoform 7 [Pan troglodytes]
 gi|114620506|ref|XP_001165637.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
           isoform 8 [Pan troglodytes]
 gi|114620508|ref|XP_001165719.1| PREDICTED: hypothetical protein isoform 11 [Pan troglodytes]
          Length = 479

 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 333 AAEAMLLQLG 342



 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 182 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 239

Query: 223 E 223
            
Sbjct: 240 L 240



 Score = 37.4 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 112 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 147


>gi|114620510|ref|XP_001165689.1| PREDICTED: staufen homolog 2 isoform 10 [Pan troglodytes]
          Length = 485

 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 280 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 338

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 339 AAEAMLLQLG 348



 Score = 52.8 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+  
Sbjct: 201 VIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQEL 246



 Score = 37.4 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 112 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 147


>gi|114620494|ref|XP_001165466.1| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes]
 gi|114620496|ref|XP_001165497.1| PREDICTED: hypothetical protein isoform 4 [Pan troglodytes]
 gi|114620498|ref|XP_001165668.1| PREDICTED: hypothetical protein isoform 9 [Pan troglodytes]
          Length = 511

 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 306 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 364

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 365 AAEAMLLQLG 374



 Score = 58.5 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             V P+YK+    GP H   F+V + +           S + A+Q  A++ L
Sbjct: 20  NRVQPQYKLLNERGPAHSKMFSVQLSLGEQTWES-EGSSIKKAQQAVASKAL 70



 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 214 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 271

Query: 223 E 223
            
Sbjct: 272 L 272



 Score = 37.4 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 144 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 179


>gi|73999252|ref|XP_535103.2| PREDICTED: similar to staufen homolog 2 isoform 1 [Canis
           familiaris]
          Length = 479

 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 333 AAEAMLLQLG 342



 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 182 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 239

Query: 223 E 223
            
Sbjct: 240 L 240



 Score = 37.4 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 112 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 147


>gi|68533083|dbj|BAE06096.1| STAU2 variant protein [Homo sapiens]
          Length = 490

 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 285 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 343

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 344 AAEAMLLQLG 353



 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 193 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 250

Query: 223 E 223
            
Sbjct: 251 L 251



 Score = 37.4 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 123 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 158


>gi|207080126|ref|NP_001128815.1| DKFZP469K0112 protein [Pongo abelii]
 gi|55729500|emb|CAH91481.1| hypothetical protein [Pongo abelii]
          Length = 479

 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 333 AAEAMLLQLG 342



 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 182 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 239

Query: 223 E 223
            
Sbjct: 240 L 240



 Score = 37.4 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 112 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 147


>gi|197101215|ref|NP_001124896.1| double-stranded RNA-binding protein Staufen homolog 2 [Pongo
           abelii]
 gi|55726277|emb|CAH89910.1| hypothetical protein [Pongo abelii]
          Length = 491

 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 286 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 344

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 345 AAEAMLLQLG 354



 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 194 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 251

Query: 223 E 223
            
Sbjct: 252 L 252



 Score = 37.4 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 124 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 159


>gi|6634457|emb|CAB64341.1| 39k3 protein [Homo sapiens]
 gi|83404956|gb|AAI10448.1| Staufen, RNA binding protein, homolog 2 (Drosophila) [Homo sapiens]
 gi|119607412|gb|EAW87006.1| staufen, RNA binding protein, homolog 2 (Drosophila), isoform CRA_d
           [Homo sapiens]
 gi|189054410|dbj|BAG37183.1| unnamed protein product [Homo sapiens]
          Length = 479

 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 333 AAEAMLLQLG 342



 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 182 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 239

Query: 223 E 223
            
Sbjct: 240 L 240



 Score = 37.4 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 112 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 147


>gi|7022914|dbj|BAA91766.1| unnamed protein product [Homo sapiens]
 gi|10435197|dbj|BAB14522.1| unnamed protein product [Homo sapiens]
          Length = 206

 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 1   MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 59

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 60  AAEAMLLQLG 69


>gi|332240606|ref|XP_003269478.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
           [Nomascus leucogenys]
          Length = 570

 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 5/97 (5%)

Query: 131 GIEVAGTFVDKYWKQRALKSGK---FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           G+E    F  K   +  +K+G       +  + L +   AK    P+Y +    G     
Sbjct: 280 GVEKPKLFFKKR-PKTIVKAGPEYGQGMNPISRLAQIQQAKKEKEPDYVLLSERGMPRRR 338

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            F + V++ G   A G   +K+ A++ AA  +L + G
Sbjct: 339 EFVMQVKV-GNEVATGTGPNKKIAKKNAAEAMLLQLG 374



 Score = 57.4 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             V P+YK+    GP H   F+V + +           S + A+Q  A + L
Sbjct: 20  NRVQPQYKLLNERGPAHSKMFSVQLSLGEQTWES-EGSSIKKAQQAVANKAL 70



 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 214 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 271

Query: 223 E 223
            
Sbjct: 272 L 272



 Score = 37.0 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 144 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 179


>gi|55741782|ref|NP_001007150.1| double-stranded RNA-binding protein Staufen homolog 2 isoform LL
           (A) [Rattus norvegicus]
 gi|19526444|gb|AAL89718.1|AF483620_1 RNA-binding protein staufen splice form A [Rattus norvegicus]
          Length = 571

 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 5/96 (5%)

Query: 132 IEVAGTFVDKYWKQRALKSGK---FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           IE    F  K   +  +K+G       +  + L +   A+    P+Y +    G     +
Sbjct: 281 IEKPKLFFKKR-PKTIIKAGPEYGQGMNPISRLAQIQQARKEKEPDYVLLSERGMPRRRK 339

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           F + V++ G   A G   +K+ A++ AA  +L + G
Sbjct: 340 FVMQVKV-GNEVATGTGPNKKIAKKNAAEAMLLQLG 374



 Score = 58.9 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             + P+YK+   SGP H   F+V + +           S + A+Q  A + L
Sbjct: 20  HSIQPQYKLLNESGPAHSKMFSVQLSLGEQTWES-EGSSIKKAQQAVANKAL 70



 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 214 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 271

Query: 223 E 223
            
Sbjct: 272 L 272



 Score = 37.4 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 144 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 179


>gi|281337840|gb|EFB13424.1| hypothetical protein PANDA_016331 [Ailuropoda melanoleuca]
          Length = 510

 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 306 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 364

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 365 AAEAMLLQLG 374



 Score = 58.2 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             V P+YK+    GP H   F+V + +           S + A+Q  A + L
Sbjct: 20  NRVQPQYKLLKERGPAHSKMFSVQLSLGEQTWES-EGSSIKKAQQAVANKAL 70



 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 214 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 271

Query: 223 E 223
            
Sbjct: 272 L 272



 Score = 37.4 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 144 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 179


>gi|328774462|gb|EGF84499.1| hypothetical protein BATDEDRAFT_22607 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 334

 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/240 (18%), Positives = 84/240 (35%), Gaps = 53/240 (22%)

Query: 31  SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90
           S +      ++RLEFLGD +L  L    L+        G LS     LV  +  + V+ +
Sbjct: 6   SGTGKLGSMFQRLEFLGDAVLSYLAMQHLYKITPPLNPGGLSKLRAELVCNQFLACVSIQ 65

Query: 91  LDLASFIRVSSDLRK--------------------------------------DVCSFMT 112
           + L  +IR +    +                                      +  +   
Sbjct: 66  IGLVKYIRHTDMTMEAAIGRFTAWVQGYLASESSTPLPISTSATQIASARMFWNKGNTAP 125

Query: 113 SIQADVVESLIAALYLDGGIEVAG-------TFVDKYWKQRALKSGKFRR---DAKTELQ 162
               DV ES++ A+++D   ++         T +  +W +     G       +   EL+
Sbjct: 126 KTAGDVYESMLGAVFVDSQFDIHCVQSMFDITVISPWWWRFTSLFGGESMIYENPVAELR 185

Query: 163 EWAHAKFG-VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             +++ F  V  +Y  T+  G  H    T  +    +  AQ +   +R A++ AA   ++
Sbjct: 186 TLSYSLFKCVKIDY--TYEYGL-HGGT-TATITYHNMVLAQCLGTGQRDAKKAAACTAVE 241


>gi|328766772|gb|EGF76825.1| hypothetical protein BATDEDRAFT_28342 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 460

 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 85/240 (35%), Gaps = 53/240 (22%)

Query: 31  SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90
           S +      ++RLEFLGD +L  L    L+        G LS     LV  +  + V+ +
Sbjct: 132 SGTGKLGSIFQRLEFLGDAVLSYLAMQHLYKITPPLNPGGLSKLRAELVCNQFLACVSIQ 191

Query: 91  LDLASFIRV--------------------------------------SSDLRKDVCSFMT 112
           + L  +IR                                       S+ L  +  +   
Sbjct: 192 IGLVKYIRHTDMTMEAAIGRFTAWVQGYLASESSTSLPISTSATQIASARLFWNKGNTAP 251

Query: 113 SIQADVVESLIAALYLDGGIEVAG-------TFVDKYWKQRALKSGKFRR---DAKTELQ 162
               DV ES++ A+++D   ++         T +  +W +     G       +   EL+
Sbjct: 252 KTAGDVYESMLGAVFVDSQFDIHCVQSMFDITVISPWWWRFTSLFGGESMIYENPVAELR 311

Query: 163 EWAHAKFG-VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             +++ F  V  +Y  T+  G  H    T  +    +  AQ +   +R A++ AA   ++
Sbjct: 312 TLSYSLFKCVKIDY--TYEYGL-HGGT-TATITYHNMVLAQCLGTGQRDAKKAAACTAVE 367


>gi|256418997|ref|NP_001157853.1| double-stranded RNA-binding protein Staufen homolog 2 isoform b
           [Homo sapiens]
          Length = 538

 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 333 AAEAMLLQLG 342



 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 182 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 239

Query: 223 E 223
            
Sbjct: 240 L 240



 Score = 37.4 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 112 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 147


>gi|311253723|ref|XP_003125644.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog
           2-like [Sus scrofa]
          Length = 477

 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 327 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 385

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 386 AAEAMLLQLG 395



 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 235 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 292

Query: 223 E 223
            
Sbjct: 293 L 293



 Score = 37.4 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 165 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 200


>gi|114620490|ref|XP_519808.2| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
           isoform 12 [Pan troglodytes]
          Length = 538

 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 333 AAEAMLLQLG 342



 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 182 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 239

Query: 223 E 223
            
Sbjct: 240 L 240



 Score = 37.4 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 112 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 147


>gi|23507041|gb|AAN37927.1|AF459098_1 double-stranded RNA-binding protein Staufen2 short isoform [Homo
           sapiens]
 gi|14249967|gb|AAH08369.1| STAU2 protein [Homo sapiens]
 gi|119607411|gb|EAW87005.1| staufen, RNA binding protein, homolog 2 (Drosophila), isoform CRA_c
           [Homo sapiens]
 gi|123999574|gb|ABM87331.1| staufen, RNA binding protein, homolog 2 (Drosophila) [synthetic
           construct]
 gi|157929178|gb|ABW03874.1| staufen, RNA binding protein, homolog 2 (Drosophila) [synthetic
           construct]
          Length = 538

 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 333 AAEAMLLQLG 342



 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 182 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 239

Query: 223 E 223
            
Sbjct: 240 L 240



 Score = 37.4 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 112 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 147


>gi|321457596|gb|EFX68679.1| hypothetical protein DAPPUDRAFT_259733 [Daphnia pulex]
          Length = 402

 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 58/183 (31%), Gaps = 56/183 (30%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
             +  E  + Y   ++ +L +A TH   +    ++Y+RLE +GD  L             
Sbjct: 83  SLAKFENILHYTSNDKEVLLEAFTHG--NSMKSQNYQRLELIGDAAL------------- 127

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSF------------- 110
               G+++   ++ V  +     A +      ++ +   L K    F             
Sbjct: 128 ----GDITKLRSACVCNDIFGVWAAKYGFHEHVQNLPPILLKQFNDFLEVVERENITFAP 183

Query: 111 -----------------MTSIQADVVESLIAALYLDGGIE------VAGTFVDKYWKQRA 147
                            + S  ADV E++  A+ +D  +       V   F+   +    
Sbjct: 184 FERELAANGQIMATQVAIPSFLADVFEAVEGAIIIDANLSFETLERVYARFMTPVYDSPP 243

Query: 148 LKS 150
           L  
Sbjct: 244 LSP 246



 Score = 52.0 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGL 53
               E+ + Y+F  + +L +ALT     +S +  +Y+RLE +GD  L  
Sbjct: 315 VKAFEEILNYSFNYKEVLLEALT---YGNSIRSLNYQRLEVIGDAALDY 360


>gi|50949968|emb|CAH10527.1| hypothetical protein [Homo sapiens]
          Length = 314

 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 109 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 167

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 168 AAEAMLLQLG 177



 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 17  EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 74

Query: 223 E 223
            
Sbjct: 75  L 75


>gi|242089535|ref|XP_002440600.1| hypothetical protein SORBIDRAFT_09g003860 [Sorghum bicolor]
 gi|241945885|gb|EES19030.1| hypothetical protein SORBIDRAFT_09g003860 [Sorghum bicolor]
          Length = 573

 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  LQE AH      P Y    RSGP H P FT  VE++G         +K+ A++ AA
Sbjct: 88  YKNLLQETAHRAGLKLPIYTTI-RSGPGHTPVFTCTVELAGKTFTGNPGKTKKQAQKNAA 146

Query: 217 AEV---LKRE 223
                 LK+ 
Sbjct: 147 MAAWSDLKQL 156



 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVA 215
            K +LQE A       P Y    R GPDH PRF   V  +G          + R AE  A
Sbjct: 2   YKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKATVNFNGEMFESPAFCSTLRQAEHAA 60

Query: 216 AAEVLKRE 223
           A   L   
Sbjct: 61  AEVALNEL 68


>gi|189233967|ref|XP_001810552.1| PREDICTED: similar to staufen [Tribolium castaneum]
 gi|270015116|gb|EFA11564.1| staufen [Tribolium castaneum]
          Length = 724

 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 1/69 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + L +   A     P Y V    G      F +   ++G +   G+  +K+ A++ A
Sbjct: 456 NPISRLIQIQQANKEREPVYTVLEERGAPRRREFVIEASVNGHS-CTGVGPNKKIAKRNA 514

Query: 216 AAEVLKREG 224
           A  +L + G
Sbjct: 515 AEALLNQLG 523



 Score = 58.2 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +Y++T  SGP H   FTV +++      +    S + A+  AAA+ L +
Sbjct: 124 QYQLTEESGPAHKKVFTVTLKLGNEEY-KSEGPSIKKAQHSAAAQSLAK 171



 Score = 57.4 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   + + E A  +   +  ++V    GP H   F     +     A+G    K+ +++ 
Sbjct: 345 KSPISLVHEIALKRNL-SVTFEVLSEKGPPHMKVFVTQCRVGNFV-AEGEGNGKKISKKR 402

Query: 215 AAAEVLKRE 223
           AA ++L+  
Sbjct: 403 AAEKMLEEL 411


>gi|301782463|ref|XP_002926647.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog
           2-like [Ailuropoda melanoleuca]
          Length = 576

 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 333 AAEAMLLQLG 342



 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 182 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 239

Query: 223 E 223
            
Sbjct: 240 L 240



 Score = 37.4 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 112 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 147


>gi|256418999|ref|NP_001157854.1| double-stranded RNA-binding protein Staufen homolog 2 isoform c
           [Homo sapiens]
          Length = 504

 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 202 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 260

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 261 AAEAMLLQLG 270



 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 110 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 167

Query: 223 E 223
            
Sbjct: 168 L 168



 Score = 37.4 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 40  KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 75


>gi|332826413|ref|XP_003311807.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
           [Pan troglodytes]
 gi|221044446|dbj|BAH13900.1| unnamed protein product [Homo sapiens]
          Length = 504

 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 202 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 260

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 261 AAEAMLLQLG 270



 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 110 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 167

Query: 223 E 223
            
Sbjct: 168 L 168



 Score = 37.4 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 40  KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 75


>gi|221039638|dbj|BAH11582.1| unnamed protein product [Homo sapiens]
          Length = 390

 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 286 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 344

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 345 AAEAMLLQLG 354



 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 194 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 251

Query: 223 E 223
            
Sbjct: 252 L 252



 Score = 37.4 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 124 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 159


>gi|256418995|ref|NP_001157852.1| double-stranded RNA-binding protein Staufen homolog 2 isoform a
           [Homo sapiens]
          Length = 570

 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 306 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 364

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 365 AAEAMLLQLG 374



 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             V P+YK+    GP H   F+V + +           S + A+Q  A + L
Sbjct: 20  NRVQPQYKLLNERGPAHSKMFSVQLSLGEQTWES-EGSSIKKAQQAVANKAL 70



 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 214 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 271

Query: 223 E 223
            
Sbjct: 272 L 272



 Score = 37.4 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 144 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 179


>gi|73919458|sp|Q9NUL3|STAU2_HUMAN RecName: Full=Double-stranded RNA-binding protein Staufen homolog 2
 gi|23507039|gb|AAN37926.1|AF459097_1 double-stranded RNA-binding protein Staufen2 long isoform [Homo
           sapiens]
 gi|7023858|dbj|BAA92111.1| unnamed protein product [Homo sapiens]
 gi|119607410|gb|EAW87004.1| staufen, RNA binding protein, homolog 2 (Drosophila), isoform CRA_b
           [Homo sapiens]
 gi|119607413|gb|EAW87007.1| staufen, RNA binding protein, homolog 2 (Drosophila), isoform CRA_b
           [Homo sapiens]
          Length = 570

 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 306 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 364

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 365 AAEAMLLQLG 374



 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             V P+YK+    GP H   F+V + +           S + A+Q  A + L
Sbjct: 20  NRVQPQYKLLNERGPAHSKMFSVQLSLGEQTWES-EGSSIKKAQQAVANKAL 70



 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 214 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 271

Query: 223 E 223
            
Sbjct: 272 L 272



 Score = 37.4 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 144 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 179


>gi|114620488|ref|XP_001165116.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
           isoform 1 [Pan troglodytes]
          Length = 570

 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 306 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 364

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 365 AAEAMLLQLG 374



 Score = 58.5 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             V P+YK+    GP H   F+V + +           S + A+Q  A++ L
Sbjct: 20  NRVQPQYKLLNERGPAHSKMFSVQLSLGEQTWES-EGSSIKKAQQAVASKAL 70



 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 214 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 271

Query: 223 E 223
            
Sbjct: 272 L 272



 Score = 37.4 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 144 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 179


>gi|297299584|ref|XP_001084686.2| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
           isoform 4 [Macaca mulatta]
          Length = 570

 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 306 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 364

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 365 AAEAMLLQLG 374



 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             V P+YK+    GP H   F+V + +           S + A+Q  A + L
Sbjct: 20  NRVQPQYKLLNERGPAHSKMFSVQLSLGEQTWES-EGSSIKKAQQAVANKAL 70



 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 214 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 271

Query: 223 E 223
            
Sbjct: 272 L 272



 Score = 37.4 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 144 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 179


>gi|73999250|ref|XP_849924.1| PREDICTED: similar to staufen, RNA binding protein, homolog 2
           isoform LL (A) isoform 2 [Canis familiaris]
          Length = 540

 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 276 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 334

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 335 AAEAMLLQLG 344



 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 182 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 239

Query: 223 E 223
            
Sbjct: 240 L 240



 Score = 37.4 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 112 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 147


>gi|195444872|ref|XP_002070068.1| GK11851 [Drosophila willistoni]
 gi|194166153|gb|EDW81054.1| GK11851 [Drosophila willistoni]
          Length = 321

 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 82/224 (36%), Gaps = 32/224 (14%)

Query: 23  LEKALTHSSISHSYQE---------------SYERLEFLGDRILGLLISTLLFNHFDSAK 67
           L++A T  S +H  +E                   L   G  +    +   L        
Sbjct: 83  LQQAFTDPSYAHKEEERQRKFGIEEEDLKIAHNAHLAEKGGHLATAYVEAYLKQSLPKVP 142

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           +  L    N L+S ET + V+R   L S   + S            I A+ ++++I AL 
Sbjct: 143 KEGLEALANYLLSTETLANVSR--HLGSIELIYSSEYPP----SDKILANSLKAVIGALS 196

Query: 128 LDGGIEVAGTFVDKYW-----KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
              G+E A TFV  +      ++  L+        K  L+E    +    PE ++    G
Sbjct: 197 DSSGVERAFTFVRDFICTQLNQKDLLEIWTPVEPFK-LLKEACQQRQWSEPEPRLQGDCG 255

Query: 183 PDHDPR---FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              +     + V +  +     +G   + + A+++AA + L++ 
Sbjct: 256 K--NTVLAAYQVGIYSNRQMLGKGFGETVQTAKEMAAIDALQKL 297


>gi|195395490|ref|XP_002056369.1| GJ10909 [Drosophila virilis]
 gi|194143078|gb|EDW59481.1| GJ10909 [Drosophila virilis]
          Length = 851

 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 1/67 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEV 219
           L E         P+Y +   SGP H   F   VEI+G          SK+ A+  AA   
Sbjct: 782 LNELTSKNKWTPPQYTLRDDSGPSHSRMFRFSVEINGQTYTPAQGCNSKKEAKLNAAKLC 841

Query: 220 LKREGIW 226
           L+  GI 
Sbjct: 842 LRALGIL 848


>gi|73999248|ref|XP_860148.1| PREDICTED: similar to staufen, RNA binding protein, homolog 2
           isoform LL (A) isoform 3 [Canis familiaris]
          Length = 544

 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 280 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 338

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 339 AAEAMLLQLG 348



 Score = 52.8 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+  
Sbjct: 200 QVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQEL 246



 Score = 37.4 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 112 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 147


>gi|325296829|ref|NP_001191656.1| neuron-specific staufen [Aplysia californica]
 gi|59323978|gb|AAW84263.1| neuron-specific staufen [Aplysia californica]
          Length = 950

 Score = 70.9 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 2/90 (2%)

Query: 136 GTFVD-KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
              +  +  +Q+A  +     +  + L +   A+    P Y +    G      F V VE
Sbjct: 669 RNLIKSELQQQKADPNYGVGINPISRLIQIMQAQKKKEPVYTLVTERGLPRRREFIVQVE 728

Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +       G   +K+ A++ AA  +L+  G
Sbjct: 729 VEDKT-CPGSGPNKKLAKRAAAEAMLQLLG 757



 Score = 38.9 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 1/34 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           +Y +    GP H   F V +++           S
Sbjct: 361 QYTLVDEQGPAHKKTFYVKLKLGDEEY-SASGES 393


>gi|221040030|dbj|BAH11778.1| unnamed protein product [Homo sapiens]
          Length = 473

 Score = 70.5 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V + G   A G   +K+ A++ 
Sbjct: 268 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVTV-GNEVATGTGPNKKIAKKN 326

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 327 AAEAMLLQLG 336



 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 176 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 233

Query: 223 E 223
            
Sbjct: 234 L 234



 Score = 37.4 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 106 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 141


>gi|291388131|ref|XP_002710684.1| PREDICTED: staufen homolog 2 isoform 2 [Oryctolagus cuniculus]
          Length = 504

 Score = 70.5 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 202 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 260

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 261 AAEAMLLQLG 270



 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 110 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 167

Query: 223 E 223
            
Sbjct: 168 L 168



 Score = 37.4 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 40  KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 75


>gi|291388129|ref|XP_002710683.1| PREDICTED: staufen homolog 2 isoform 1 [Oryctolagus cuniculus]
          Length = 570

 Score = 70.5 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 306 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 364

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 365 AAEAMLLQLG 374



 Score = 58.9 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             V P+YK+   SGP H   F+V + +           S + A+Q  A + L
Sbjct: 20  NRVQPQYKLLNESGPAHSKMFSVQLSLGEQTWES-EGSSIKKAQQAVANKAL 70



 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 214 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 271

Query: 223 E 223
            
Sbjct: 272 L 272



 Score = 37.4 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 144 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 179


>gi|296480591|gb|DAA22706.1| staufen homolog 2 [Bos taurus]
          Length = 384

 Score = 70.5 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 333 AAEAMLLQLG 342



 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 182 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 239

Query: 223 E 223
            
Sbjct: 240 L 240



 Score = 37.4 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 112 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 147


>gi|149721312|ref|XP_001491884.1| PREDICTED: similar to Double-stranded RNA-binding protein Staufen
           homolog 2 [Equus caballus]
          Length = 569

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 306 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 364

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 365 AAEAMLLQLG 374



 Score = 57.4 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             V P+YK+    GP H   F+V + +           S + A+Q  A + L
Sbjct: 20  NRVQPQYKLLRERGPAHSKMFSVQLSLGEQTWES-EGSSIKKAQQAVANKAL 70



 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 214 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 271

Query: 223 E 223
            
Sbjct: 272 L 272



 Score = 37.4 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 144 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 179


>gi|309362482|emb|CAP27969.2| hypothetical protein CBG_08071 [Caenorhabditis briggsae AF16]
          Length = 693

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 24/48 (50%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           Y +   SGP H   FTV + ++     +G   S + A+Q AA   L++
Sbjct: 83  YDLQDESGPAHKKLFTVRLVLNNEETFEGSGTSIKRAQQAAAETALEK 130



 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
            + +  + L +   AK    P +++   +G      F +  +  G    +G   +KR A+
Sbjct: 395 HQINPVSRLIQVTQAKSRHHPTFELLSENGVSKYKEFVIQAK-YGEIVCEGKGPNKRLAK 453

Query: 213 QVAAAEVLKREG 224
           + AA E+L   G
Sbjct: 454 RAAAEEMLDLIG 465



 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 6/93 (6%)

Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
           A   + ++  +R   +   ++   +++ E AH    +   ++     GP HD  + V   
Sbjct: 256 ARQKLSRFSDRRFENTNYTQKSVISDIHEKAH-LLKLNVVFETLKEEGPPHDRVYVVRCA 314

Query: 195 I-----SGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                    A A G    K+ A+Q A  ++LK 
Sbjct: 315 FVSSNKEVKAEAIGKGKKKKVAQQEACTQLLKN 347


>gi|321463534|gb|EFX74549.1| hypothetical protein DAPPUDRAFT_324210 [Daphnia pulex]
          Length = 694

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                 + P+Y++T  SGP H   F V +++           S + A+  AA   LK+
Sbjct: 103 LARHHKIQPQYRLTEESGPAHQKTFVVNLKLGEEQY-SATGQSIKKAQHAAAELALKK 159



 Score = 52.8 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 10/95 (10%)

Query: 136 GTFVDKYWKQRALKSGKFRRD-----AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
            T +DK     A    +   D       + + E A      T E+ V   SGP H   F 
Sbjct: 311 QTLIDKVQLDEAAVISEANTDSDLKSPVSLVHELALKLNL-TVEFTVLNESGPPHMRNFI 369

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKR 222
           V  ++ G    QG    K+ A++ AA  +   LK+
Sbjct: 370 VQCKL-GEVTTQGEGNCKKVAKRKAAEIMIDELKK 403



 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDC 206
           G   +D  ++L +   A+    P + V    G P   P F V V + G   A G+  
Sbjct: 452 GTKPQDPISQLVQLQQARKEKEPVFTVLSERGIPRQSPEFVVEVAV-GSVTATGVGT 507


>gi|268576457|ref|XP_002643208.1| Hypothetical protein CBG08071 [Caenorhabditis briggsae]
          Length = 663

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 24/48 (50%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           Y +   SGP H   FTV + ++     +G   S + A+Q AA   L++
Sbjct: 51  YDLQDESGPAHKKLFTVRLVLNNEETFEGSGTSIKRAQQAAAETALEK 98



 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
            + +  + L +   AK    P +++   +G      F +  +  G    +G   +KR A+
Sbjct: 370 HQINPVSRLIQVTQAKSRHHPTFELLSENGVSKYKEFVIQAK-YGEIVCEGKGPNKRLAK 428

Query: 213 QVAAAEVLKREG 224
           + AA E+L   G
Sbjct: 429 RAAAEEMLDLIG 440



 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 5/59 (8%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEI-----SGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             +   ++     GP HD  + V            A A G    K+ A+Q A  ++LK 
Sbjct: 264 LKLNVVFETLKEEGPPHDRVYVVRCAFVSSNKEVKAEAIGKGKKKKVAQQEACTQLLKN 322


>gi|114654623|ref|XP_510148.2| PREDICTED: dicer1 isoform 7 [Pan troglodytes]
          Length = 1715

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 13   IGYAFA----NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
            IGY+      N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A E
Sbjct: 1283 IGYSSRTLGPNPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHE 1340

Query: 69   GELSVRFNSLVSAETCSQVARELDLASFIRVS 100
            G LS   +  VS     ++ ++  L S + VS
Sbjct: 1341 GRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1372



 Score = 52.4 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYE---RLEF 45
            +   EK+I Y F N++ L +A TH+S  ++     E   RL F
Sbjct: 1666 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITGKEPTTRLHF 1708


>gi|221361577|emb|CAX18337.1| dicel-like 2 [Nicotiana benthamiana]
          Length = 224

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 4/57 (7%)

Query: 1   MSALRY---STLEKRIGYAFANRSLLEKALTHSSIS-HSYQESYERLEFLGDRILGL 53
           M+A +      LE  + Y F + SLL +ALTH S         Y+RLEFLGD +L  
Sbjct: 168 MNAEKLVNVRYLESLLHYKFHDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDVVLDY 224



 Score = 49.7 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 52/131 (39%), Gaps = 29/131 (22%)

Query: 41  ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQ--VAREL------- 91
           E LE LGD  L    S  LF  +++  EG L+V+ NS++S     +   AR++       
Sbjct: 22  ESLETLGDSFLKYAASIQLFKTYENHHEGLLTVKKNSIISNAALCKLGCARKIPGFIRNE 81

Query: 92  -----------------DLASFIRVSSDLRKDVCSFMTSIQ--ADVVESLIAALYLDGGI 132
                            +    + + S          T  +  ADVVE+LI A +L  G 
Sbjct: 82  PFDLKGWLIPGDNSQVYNFDEEVLMPSVKMYSRGRQKTKSKRVADVVEALIGA-FLSSGG 140

Query: 133 EVAGTFVDKYW 143
           EVA     K+ 
Sbjct: 141 EVAALSFMKWL 151


>gi|157074142|ref|NP_001096783.1| double-stranded RNA-binding protein Staufen homolog 2 [Bos taurus]
 gi|151554636|gb|AAI49988.1| STAU2 protein [Bos taurus]
          Length = 538

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 333 AAEAMLLQLG 342



 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 182 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 239

Query: 223 E 223
            
Sbjct: 240 L 240



 Score = 37.4 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 112 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 147


>gi|213512316|ref|NP_001134804.1| Interferon-induced, double-stranded RNA-activated protein kinase
           [Salmo salar]
 gi|209736186|gb|ACI68962.1| Interferon-induced, double-stranded RNA-activated protein kinase
           [Salmo salar]
          Length = 181

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 156 DAKTELQEWAHAKFGV-TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +  ++L E+A  +  +   +++     GPDH   FT+ V I G A   G+  +K+ A++ 
Sbjct: 5   NYISKLFEYAQRQGQISDIKFEEVGTDGPDHLKTFTLRVVIKGHAYPNGVGKTKKEAKRN 64

Query: 215 AAAEVL 220
           AA   L
Sbjct: 65  AAKHAL 70



 Score = 35.1 bits (80), Expect = 6.9,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 12/68 (17%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTF--RSGPDHDPRFTVVV---EISGLAPAQGMDCSKRAA 211
             + L E +          K     R GP++    T       +      +G   +K+ A
Sbjct: 107 YVSWLNEHSQKNKLSL---KALEGARVGPNN----TSQCCRYVVGEKEYPEGFGNTKKEA 159

Query: 212 EQVAAAEV 219
           ++ AA +V
Sbjct: 160 KEEAAMQV 167


>gi|19264083|gb|AAH25118.1| Stau2 protein [Mus musculus]
          Length = 479

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   A+    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 274 MNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 333 AAEAMLLQLG 342



 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 182 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 239

Query: 223 E 223
            
Sbjct: 240 L 240



 Score = 37.4 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 112 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 147


>gi|12853295|dbj|BAB29708.1| unnamed protein product [Mus musculus]
          Length = 206

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   A+    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 1   MNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 59

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 60  AAEAMLLQLG 69


>gi|256419001|ref|NP_001157855.1| double-stranded RNA-binding protein Staufen homolog 2 isoform d
           [Homo sapiens]
          Length = 398

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 134 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 192

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 193 AAEAMLLQLG 202



 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 42  EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 99

Query: 223 E 223
            
Sbjct: 100 L 100


>gi|221039518|dbj|BAH11522.1| unnamed protein product [Homo sapiens]
          Length = 398

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 134 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 192

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 193 AAEAMLLQLG 202



 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 42  EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 99

Query: 223 E 223
            
Sbjct: 100 L 100


>gi|332826415|ref|XP_003311808.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
           [Pan troglodytes]
          Length = 474

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 210 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 268

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 269 AAEAMLLQLG 278



 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 118 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 175

Query: 223 E 223
            
Sbjct: 176 L 176



 Score = 37.0 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 48  KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 83


>gi|332017864|gb|EGI58524.1| Protein SON [Acromyrmex echinatior]
          Length = 808

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 1/73 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS-KRAAEQ 213
           +   + L E+   K    P Y++ F SGPDH   F   V+++G+     +  S K+ A+ 
Sbjct: 734 KHPVSLLGEYCTKKKLGAPVYELCFESGPDHRKNFLFKVKVNGIEYKPSVASSNKKQAKA 793

Query: 214 VAAAEVLKREGIW 226
            AA   L+  G+ 
Sbjct: 794 EAAQICLQNLGLL 806


>gi|109096950|ref|XP_001106036.1| PREDICTED: RISC-loading complex subunit TARBP2 [Macaca mulatta]
          Length = 366

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            K    PEY VT  SGP H   FT+   +       G   SK+ A++ AAA++L R
Sbjct: 170 QKGWRLPEYTVTQESGPAHRKEFTMTCRVE-RFIEIGSGTSKKLAKRNAAAKMLLR 224



 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             + LQE+   + G TP Y +    G  H P FT  V +       G   S
Sbjct: 31  PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVTVGD-TSCTGQGPS 79


>gi|325120999|ref|NP_001191404.1| staufen [Aplysia californica]
 gi|37728097|gb|AAO38741.1| staufen [Aplysia californica]
          Length = 618

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 2/90 (2%)

Query: 136 GTFVD-KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
              +  +  +Q+A  +     +  + L +   A+    P Y +    G      F V VE
Sbjct: 337 RNLIKSELQQQKADPNYGVGINPISRLIQIMQAQKKKEPVYTLVTERGLPRRREFIVQVE 396

Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +       G   +K+ A++ AA  +L+  G
Sbjct: 397 VEDKT-CPGSGPNKKLAKRAAAEAMLQLLG 425



 Score = 38.9 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 1/34 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           +Y +    GP H   F V +++           S
Sbjct: 29  QYTLVDEQGPAHKKTFYVKLKLGDEEY-SASGES 61


>gi|145517933|ref|XP_001444844.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|74830355|emb|CAI39054.1| Ribonuclease with two RNaseIII domains [Paramecium tetraurelia]
 gi|124412277|emb|CAK77447.1| unnamed protein product [Paramecium tetraurelia]
          Length = 632

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 63/133 (47%), Gaps = 20/133 (15%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           ++E  + Y      + E+A+  SS +  ++ +YE LE LGD +L  +I+  +F  +    
Sbjct: 334 SVESILNYQ-----VPEEAIVTSSFN--FKRNYENLEVLGDSVLKYVITADIFKQYKLLD 386

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFI--------RVSSDLRKDVCSFMTSIQ---- 115
           EGE++   + L+     +Q+  +L L  FI        ++ + L  D+ S          
Sbjct: 387 EGEMTSLRSRLIMNTFLAQLFEQLGLEQFIINQDLHFKQIKNPLVNDIISSENKQLQISQ 446

Query: 116 -ADVVESLIAALY 127
            AD+ E++I  ++
Sbjct: 447 KADIYEAIIGGVF 459



 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 53/148 (35%), Gaps = 28/148 (18%)

Query: 15  YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLL-------ISTLLFNHFDS-- 65
           Y F N  L E A+          + Y+RLEFLGD  + LL       ++        +  
Sbjct: 504 YKFNNPQLYEIAI--------NPQYYDRLEFLGDAAIELLVISYAFRVAREKQQKNPNWS 555

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
              G LS     L+  +   +   ++ L           K   + +  +  D+ +S+ AA
Sbjct: 556 LNPGLLSTWKQYLLGNKFMGEQTIKMGL-----------KPQVNEIPKLYGDIFQSVAAA 604

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKF 153
           + LD G           +K+   +  + 
Sbjct: 605 ILLDSGWRGLNQVYGSLYKKYLDEIIEL 632


>gi|296226704|ref|XP_002759045.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
           isoform 2 [Callithrix jacchus]
          Length = 538

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 333 AAEAMLLQLG 342



 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 182 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 239

Query: 223 E 223
            
Sbjct: 240 L 240



 Score = 37.0 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 112 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 147


>gi|157116156|ref|XP_001658385.1| staufen [Aedes aegypti]
 gi|108876611|gb|EAT40836.1| staufen [Aedes aegypti]
          Length = 1103

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 1/85 (1%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
               K++  +      +  + L +   A+    P Y +    G      F + V  SG +
Sbjct: 712 RNLIKEKGDEDPTGMVNPISRLMQIQQARKEKEPVYTLVEERGVARRREFIMEVSASGKS 771

Query: 200 PAQGMDCSKRAAEQVAAAEVLKREG 224
            A G+  +K+ A++ AA  +L   G
Sbjct: 772 -ATGIGPTKKLAKKEAAENLLVMLG 795



 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +Y++T  SGP H  RFTV +++           S + A+  AA E +
Sbjct: 360 QYRLTCESGPAHKKRFTVTLKLGDEEY-TAEGPSIKKAQHSAAHEAI 405



 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 5/79 (6%)

Query: 148 LKSGKFRRDAKTEL---QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
           + S     D K+ +    E A  +   T +++V    GP H   FT + ++ G    +G 
Sbjct: 606 IDSDDPNSDLKSPISLVHEMALKRKL-TVQFEVHGEKGPPHMKVFTTLCKV-GSIVTEGE 663

Query: 205 DCSKRAAEQVAAAEVLKRE 223
              K+ +++ AA ++L   
Sbjct: 664 GNGKKLSKKRAAEKMLDEL 682


>gi|71896437|ref|NP_001026112.1| double-stranded RNA-binding protein Staufen homolog 2 [Gallus
           gallus]
 gi|53130432|emb|CAG31545.1| hypothetical protein RCJMB04_7n10 [Gallus gallus]
          Length = 472

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V+I G     G   +K+ A++ 
Sbjct: 378 MNPISRLAQIQQAKKEKEPEYVLLSERGMPRRREFVMQVKI-GNEITTGTGPNKKIAKRN 436

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 437 AAEAMLLQLG 446



 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             + P+YK+    GP H   FTV + +      +    S + A+  AA++ L 
Sbjct: 92  NRIQPQYKLLNERGPAHAKMFTVQLTLGEQTW-EAEGSSIKKAQHAAASKALN 143



 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           K  +   ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+  
Sbjct: 290 KRNIPVSFEVIKESGPPHMKSFVTRVTV-GEFTAEGEGNSKKLSKERAAMSVLQEL 344



 Score = 36.6 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 216 KIFYVQLTVGNSEFF-GEGKTRQAARHNAAMKALQAL 251


>gi|47229756|emb|CAG06952.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 665

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V ++G + A+GM  SK+ A++ 
Sbjct: 380 MNPISRLAQIQQAKKEKEPEYSMVTERGLPRRREFVMQVTVNGQS-AEGMGPSKKVAKRN 438

Query: 215 AAAEVLKREG 224
           AA ++L+  G
Sbjct: 439 AAEKMLELLG 448



 Score = 58.2 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             + P+YK+    GP H   F+V + +      +    S + A+  AAA  L
Sbjct: 87  NKIQPQYKLLCEQGPAHSKIFSVQLTLGDQYW-EAEGPSIKKAQHSAAASAL 137


>gi|238480134|ref|NP_001154686.1| DRB4 (DOUBLE-STRANDED-RNA-BINDING PROTEIN 4); double-stranded RNA
           binding / protein binding [Arabidopsis thaliana]
 gi|197267565|dbj|BAG69145.1| dsRNA-binding protein [Arabidopsis thaliana]
 gi|332646874|gb|AEE80395.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
          Length = 329

 Score = 70.1 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  LQE A  +  + P Y  T  SGP H P FT  VE +G   +     +K+ AE  AA
Sbjct: 83  YKNLLQEIAQKESSLLPFYA-TATSGPSHAPTFTSTVEFAGKVFSGEEAKTKKLAEMSAA 141

Query: 217 AEV 219
              
Sbjct: 142 KVA 144



 Score = 48.5 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215
            K +LQ +A       P Y    R GP H PRF   V   G          + ++AE  A
Sbjct: 5   YKGQLQAYALQHNLELPVYA-NEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63

Query: 216 AAEV 219
           A   
Sbjct: 64  AKIA 67


>gi|7362760|emb|CAB83130.1| putative protein [Arabidopsis thaliana]
          Length = 345

 Score = 70.1 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  LQE A  +  + P Y  T  SGP H P FT  VE +G   +     +K+ AE  AA
Sbjct: 73  YKNLLQEIAQKESSLLPFYA-TATSGPSHAPTFTSTVEFAGKVFSGEEAKTKKLAEMSAA 131

Query: 217 AEV 219
              
Sbjct: 132 KVA 134



 Score = 48.5 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215
            K +LQ +A       P Y    R GP H PRF   V   G          + ++AE  A
Sbjct: 5   YKGQLQAYALQHNLELPVYA-NEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63

Query: 216 AAEV 219
           A   
Sbjct: 64  AKIA 67


>gi|22331912|ref|NP_191839.2| DRB4 (DOUBLE-STRANDED-RNA-BINDING PROTEIN 4); double-stranded RNA
           binding / protein binding [Arabidopsis thaliana]
 gi|42572769|ref|NP_974480.1| DRB4 (DOUBLE-STRANDED-RNA-BINDING PROTEIN 4); double-stranded RNA
           binding / protein binding [Arabidopsis thaliana]
 gi|75244610|sp|Q8H1D4|DRB4_ARATH RecName: Full=Double-stranded RNA-binding protein 4; AltName:
           Full=dsRNA-binding protein 4; Short=AtDRB4
 gi|23297784|gb|AAN13025.1| unknown protein [Arabidopsis thaliana]
 gi|332646872|gb|AEE80393.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
 gi|332646873|gb|AEE80394.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
          Length = 355

 Score = 70.1 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  LQE A  +  + P Y  T  SGP H P FT  VE +G   +     +K+ AE  AA
Sbjct: 83  YKNLLQEIAQKESSLLPFYA-TATSGPSHAPTFTSTVEFAGKVFSGEEAKTKKLAEMSAA 141

Query: 217 AEV 219
              
Sbjct: 142 KVA 144



 Score = 48.5 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215
            K +LQ +A       P Y    R GP H PRF   V   G          + ++AE  A
Sbjct: 5   YKGQLQAYALQHNLELPVYA-NEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63

Query: 216 AAEV 219
           A   
Sbjct: 64  AKIA 67


>gi|18389232|gb|AAL67059.1| unknown protein [Arabidopsis thaliana]
          Length = 355

 Score = 70.1 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  LQE A  +  + P Y  T  SGP H P FT  VE +G   +     +K+ AE  AA
Sbjct: 83  YKNLLQEIAQKESSLLPFYA-TATSGPSHAPTFTSTVEFAGKVFSGEEAKTKKLAEMSAA 141

Query: 217 AEV 219
              
Sbjct: 142 KVA 144



 Score = 48.5 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215
            K +LQ +A       P Y    R GP H PRF   V   G          + ++AE  A
Sbjct: 5   YKGQLQAYALQHNLELPVYA-NEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63

Query: 216 AAEV 219
           A   
Sbjct: 64  AKIA 67


>gi|242069683|ref|XP_002450118.1| hypothetical protein SORBIDRAFT_05g000800 [Sorghum bicolor]
 gi|241935961|gb|EES09106.1| hypothetical protein SORBIDRAFT_05g000800 [Sorghum bicolor]
          Length = 118

 Score = 70.1 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214
            K+ LQE+A      T EY      GP H+P F   V ++        G   S++AAEQ 
Sbjct: 33  FKSRLQEYAQKVGITTLEYHTLKE-GPSHEPVFKSTVVVNNTRYESLPGF-FSRKAAEQS 90

Query: 215 AAAEVL 220
           AA   L
Sbjct: 91  AAEVAL 96


>gi|296226702|ref|XP_002759044.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
           isoform 1 [Callithrix jacchus]
          Length = 570

 Score = 70.1 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 306 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 364

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 365 AAEAMLLQLG 374



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             V P+YK+    GP H   F+V + +           S + A+Q  A + L
Sbjct: 20  NRVQPQYKLLNERGPAHSKMFSVQLSLGEQTWES-EGSSIKKAQQAVANKAL 70



 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 214 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 271

Query: 223 E 223
            
Sbjct: 272 L 272



 Score = 37.0 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 144 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 179


>gi|148225849|ref|NP_001086918.1| staufen, RNA binding protein, homolog 2 [Xenopus laevis]
 gi|83318414|gb|AAI08851.1| Stau2-b protein [Xenopus laevis]
          Length = 689

 Score = 70.1 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 3/95 (3%)

Query: 132 IEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
           IE    ++ +  K     S ++ +  +  + L +   AK    PEY +    G      F
Sbjct: 364 IEKPRIYIKRRPKNIIKASPEYGQGMNPISRLAQIQQAKKEKEPEYVLLSERGIQRRREF 423

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            + V++ G   A G   +K+ A++ AA  +L + G
Sbjct: 424 IMQVKV-GEEAATGTGPNKKTAKRNAAEAMLLQLG 457



 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             + P+YK+    GP H   FTV + +      Q    S + A+  AA+  L
Sbjct: 103 NRIQPQYKLLDERGPAHSKLFTVQLTLGEQTW-QAESTSIKKAQHAAASLAL 153



 Score = 42.4 bits (99), Expect = 0.045,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 2/45 (4%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           E +  +      ++V   SGP H   F   V + G   A+G   S
Sbjct: 297 EISLKRNLPL-SFEVIKESGPPHMKSFVTRVMV-GEFTAEGEGNS 339


>gi|326917772|ref|XP_003205170.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog
           2-like, partial [Meleagris gallopavo]
          Length = 479

 Score = 70.1 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G     G   +K+ A++ 
Sbjct: 378 MNPISRLAQIQQAKKEKEPEYVLLSERGMPRRREFVMQVKV-GNEITTGTGPNKKIAKRN 436

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 437 AAEAMLLQLG 446



 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             + P+YK+    GP H   FTV + +      +    S + A+  AA++ L 
Sbjct: 92  NRIQPQYKLLNERGPAHAKMFTVQLTLGEQTW-EAEGSSIKKAQHAAASKALN 143



 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           K  +   ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+  
Sbjct: 290 KRNIPVSFEVIKESGPPHMKSFVTRVTV-GEFTAEGEGNSKKLSKKRAAMSVLQEL 344



 Score = 36.6 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 216 KIFYVQLTVGNSEFF-GEGKTRQAARHNAAMKALQAL 251


>gi|296226706|ref|XP_002759046.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
           isoform 3 [Callithrix jacchus]
          Length = 504

 Score = 70.1 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 202 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 260

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 261 AAEAMLLQLG 270



 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 110 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 167

Query: 223 E 223
            
Sbjct: 168 L 168



 Score = 37.0 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 40  KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 75


>gi|58332604|ref|NP_001011376.1| double-stranded RNA-binding protein Staufen homolog 2 [Xenopus
           (Silurana) tropicalis]
 gi|73919461|sp|Q5M7M7|STAU2_XENTR RecName: Full=Double-stranded RNA-binding protein Staufen homolog 2
 gi|56788853|gb|AAH88555.1| staufen, RNA binding protein, homolog 2 [Xenopus (Silurana)
           tropicalis]
          Length = 624

 Score = 70.1 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 3/95 (3%)

Query: 132 IEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
           IE    ++ +  K     S ++ +  +  + L +   AK    PEY +    G      F
Sbjct: 299 IEKPRIYIKRRPKNIIKASPEYGQGMNPISRLAQIQQAKKEKEPEYVLLSERGIQRRREF 358

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            + V++ G   A G   +K+ A++ AA  +L + G
Sbjct: 359 VMQVKV-GEETATGTGPNKKTAKRNAAEAMLLQLG 392



 Score = 55.9 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             + P+YK+    GP H   FTV + +      Q    S + A+  AA+  L
Sbjct: 20  NRIQPQYKLLDERGPAHSKLFTVQLTLGEQTW-QAESTSIKKAQHAAASLAL 70



 Score = 40.4 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 2/45 (4%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           E +  +      ++V   SGP H   F   V + G   A+G   S
Sbjct: 232 EISLKRNLSL-SFEVIKESGPPHMKSFVTRVTV-GEFTAEGEGNS 274


>gi|148682396|gb|EDL14343.1| staufen (RNA binding protein) homolog 2 (Drosophila), isoform CRA_a
           [Mus musculus]
          Length = 370

 Score = 70.1 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   A+    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 274 MNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 333 AAEAMLLQLG 342



 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 182 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 239

Query: 223 E 223
            
Sbjct: 240 L 240



 Score = 37.4 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 112 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 147


>gi|162287083|ref|NP_001104742.1| double-stranded RNA-binding protein Staufen homolog 2 isoform 2
           [Mus musculus]
 gi|23507045|gb|AAN37929.1|AF459100_1 double-stranded RNA-binding protein Staufen2 short isoform [Mus
           musculus]
          Length = 538

 Score = 70.1 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   A+    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 274 MNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 333 AAEAMLLQLG 342



 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 182 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 239

Query: 223 E 223
            
Sbjct: 240 L 240



 Score = 37.4 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 112 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 147


>gi|148682397|gb|EDL14344.1| staufen (RNA binding protein) homolog 2 (Drosophila), isoform CRA_b
           [Mus musculus]
          Length = 402

 Score = 70.1 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   A+    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 306 MNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 364

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 365 AAEAMLLQLG 374



 Score = 58.5 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             + P+YK+   SGP H   F+V + +           S + A+Q  A + L
Sbjct: 20  HSIQPQYKLLNESGPAHSKMFSVQLSLGEQTWES-EGSSIKKAQQAVANKAL 70



 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 214 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 271

Query: 223 E 223
            
Sbjct: 272 L 272



 Score = 37.4 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 144 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 179


>gi|16307507|gb|AAH10300.1| Stau2 protein [Mus musculus]
          Length = 533

 Score = 70.1 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   A+    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 269 MNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 327

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 328 AAEAMLLQLG 337



 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 177 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 234

Query: 223 E 223
            
Sbjct: 235 L 235



 Score = 37.4 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 107 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 142


>gi|194018455|ref|NP_079579.2| double-stranded RNA-binding protein Staufen homolog 2 isoform 3
           [Mus musculus]
 gi|73919459|sp|Q8CJ67|STAU2_MOUSE RecName: Full=Double-stranded RNA-binding protein Staufen homolog 2
 gi|23507043|gb|AAN37928.1|AF459099_1 double-stranded RNA-binding protein Staufen2 long isoform [Mus
           musculus]
          Length = 570

 Score = 70.1 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   A+    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 306 MNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 364

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 365 AAEAMLLQLG 374



 Score = 58.5 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             + P+YK+   SGP H   F+V + +           S + A+Q  A + L
Sbjct: 20  HSIQPQYKLLNESGPAHSKMFSVQLSLGEQTWES-EGSSIKKAQQAVANKAL 70



 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 214 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 271

Query: 223 E 223
            
Sbjct: 272 L 272



 Score = 37.4 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 144 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 179


>gi|58264874|ref|XP_569593.1| hypothetical protein CNC03670 [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|57225825|gb|AAW42286.1| hypothetical protein CNC03670 [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 875

 Score = 70.1 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 22/129 (17%)

Query: 19  NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR---- 74
           +  L  +ALT  S  +    +YERLE LGD +L   I+  ++ H   A   E S++    
Sbjct: 448 HPELALQALTAPSSQNVTPWTYERLEILGDTLLKFFITIHVYLHGGGANSREDSLKVWQD 507

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY-LDGGIE 133
            + LVS  T +  A +L L  F+                  AD+VE++I A Y  D   +
Sbjct: 508 RHKLVSNRTLTANAIKLGLVEFL-----------------LADIVEAIIGASYGRDKNFD 550

Query: 134 VAGTFVDKY 142
              + +   
Sbjct: 551 NVISTLIHL 559



 Score = 66.3 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 71/252 (28%), Gaps = 48/252 (19%)

Query: 11  KRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           + +GY F  +   E  +   S+S+    +   E  + LG+ +L L +   L   +     
Sbjct: 604 EILGYKFKRKRRYEDVI---SMSNQPHARRIRENYKMLGNAVLDLHVIEFLLAKYPEEGP 660

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVS--------------------------SD 102
           G LS       +      +A EL L   ++                            SD
Sbjct: 661 GSLSNMKTFRTTEGLRCALATELGLQDLLKDGDERAERELGRATYFMRDAKAQADAGLSD 720

Query: 103 LRKDVCSFMTSIQADVV-----ESLIAALYLDGGI--EVAGTFVDKYWKQRALK----SG 151
             +    +   +  +       E +  A++ D G   E      D +      K      
Sbjct: 721 EEQGGIHYWDGVAVNHFTGSIIEVIYGAIFQDSGFSLEHTQRIFDNHIVPFIEKYCKGPS 780

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
                 K  L  W  AK      Y      GP        VV       A+    +   A
Sbjct: 781 ASDLHPKGLLTRWMQAKGCA---YWKLDAVGP---KLCEGVVTCHDQDVARCKAFTTHVA 834

Query: 212 EQVAAAEVLKRE 223
            +    E +KR 
Sbjct: 835 VRNVCEEAIKRL 846


>gi|326511242|dbj|BAJ87635.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 527

 Score = 70.1 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  LQE A       P Y  T RSG  H P FT  VE++G+        +K+ AE+ AA
Sbjct: 88  YKNLLQEVAQRVGAPLPSY-TTERSGLGHLPVFTCTVELAGITFTGDHAKNKKQAEKNAA 146

Query: 217 AEV---LKRE 223
           +     LK+ 
Sbjct: 147 SAAWSSLKQL 156



 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
            K +LQE A       P Y    R GPDH PRF   V  +G 
Sbjct: 2   YKNQLQELAQRSCFNLPAYTCL-REGPDHAPRFKAAVIFNGE 42


>gi|330930999|ref|XP_003303230.1| hypothetical protein PTT_15361 [Pyrenophora teres f. teres 0-1]
 gi|311320897|gb|EFQ88677.1| hypothetical protein PTT_15361 [Pyrenophora teres f. teres 0-1]
          Length = 914

 Score = 70.1 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 66/162 (40%), Gaps = 16/162 (9%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHS--------YQESYERLEFLGDRILGL 53
           +A R   +E+ IGY F ++    +AL  ++ +            ++  RL  LGDR L L
Sbjct: 84  AAARVGRVEESIGYTFKHKLYCIEALKQTNSTTPLYFQGVAINTDNNRRLALLGDRALDL 143

Query: 54  LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
            +S + F  +      + +      V+    +    +++L   + + +           +
Sbjct: 144 ALSEIWF--YTGNTLADYTAMSLKTVTRAALNTQGLKINLDKNLILVAGATGAT----PN 197

Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
             A+  E+L+ A+Y+D G +V    V +      L   +F R
Sbjct: 198 QVAETFEALLGAVYVDSGHDVEA--VKRVINTVQLDQNRFLR 237


>gi|307167407|gb|EFN60992.1| Interferon-inducible double stranded RNA-dependent protein kinase
           activator A-like protein [Camponotus floridanus]
          Length = 341

 Score = 69.7 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 1/78 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
              + +     +A  ELQ+       + PEY +T  +GP H   FT+  ++S     +G+
Sbjct: 99  PPKIPANVPFVNAIGELQDLCAENNLMEPEYVLTKDTGPPHARIFTIQCKVSNFVE-EGV 157

Query: 205 DCSKRAAEQVAAAEVLKR 222
             +K+ A+  AA ++++R
Sbjct: 158 QSTKKQAKHEAARKMVER 175



 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             + LQE    K G+ P+Y++    G  H   FT  V   GL  A G    K+ A+  AA
Sbjct: 5   PVSILQEMM-VKQGMVPDYELIHNGGGRHVNTFTYRVICDGLT-AIGSGRCKKEAKHEAA 62

Query: 217 AEVL 220
             +L
Sbjct: 63  KAML 66


>gi|328770010|gb|EGF80052.1| hypothetical protein BATDEDRAFT_24776 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 380

 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 86/240 (35%), Gaps = 53/240 (22%)

Query: 31  SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90
           S +      ++RLEFLGD +L  L+   L+        G LS     LV  +  + V+ +
Sbjct: 52  SGTGKLGSMFQRLEFLGDAVLSYLVMQHLYKITPPLNPGGLSKLCAELVCNQFLACVSIQ 111

Query: 91  LDLASFIRV--------------------------------------SSDLRKDVCSFMT 112
           + L  +IR                                       S+ L  +  +   
Sbjct: 112 IGLVKYIRHTDMTMEAAIGRFATWVQGYLASESSTPLPISTSATQIASARLFWNKGNTAP 171

Query: 113 SIQADVVESLIAALYLDGGIEVAG-------TFVDKYWKQRALKSGKFRR---DAKTELQ 162
               DV ES++ A+++D   ++         T +  +W +     G       +   EL+
Sbjct: 172 KTAGDVYESMLGAVFVDSQFDIHCVQSMFDITVISPWWWRFTSLFGGESMIYENPVAELR 231

Query: 163 EWAHAKFG-VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             +++ F  V  +Y  T+  G  H    T  +    +  AQ +   +R A++ AA   ++
Sbjct: 232 TLSYSLFKCVKIDY--TYEYGL-HGGT-TATITYHNMVLAQCLGTGQRDAKKAAACTAVE 287


>gi|222630219|gb|EEE62351.1| hypothetical protein OsJ_17140 [Oryza sativa Japonica Group]
          Length = 606

 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 6/71 (8%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215
            K  LQE AH      P Y    RSGP H P FT  VE++G     G    +K+ A++ A
Sbjct: 101 YKNLLQETAHRAGLKLPVYTTI-RSGPGHTPVFTCTVELAG-MTFTGNPGKTKKQAQKNA 158

Query: 216 AAEV---LKRE 223
           A      LK+ 
Sbjct: 159 AMAAWSELKQL 169



 Score = 62.8 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVA 215
            K +LQE A       P Y    R GPDH PRF   V  +G          + R AE  A
Sbjct: 15  YKNQLQELAQRSCFNLPSYACI-REGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAA 73

Query: 216 AAEVLKRE 223
           A   L   
Sbjct: 74  AEVALNEL 81


>gi|115462131|ref|NP_001054665.1| Os05g0150400 [Oryza sativa Japonica Group]
 gi|122169532|sp|Q0DKP4|DRB2_ORYSJ RecName: Full=Double-stranded RNA-binding protein 2; AltName:
           Full=dsRNA-binding protein 2; AltName:
           Full=dsRNA-binding protein 3; Short=OsDRB3
 gi|113578216|dbj|BAF16579.1| Os05g0150400 [Oryza sativa Japonica Group]
          Length = 593

 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 6/71 (8%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215
            K  LQE AH      P Y    RSGP H P FT  VE++G     G    +K+ A++ A
Sbjct: 88  YKNLLQETAHRAGLKLPVYTTI-RSGPGHTPVFTCTVELAG-MTFTGNPGKTKKQAQKNA 145

Query: 216 AAEV---LKRE 223
           A      LK+ 
Sbjct: 146 AMAAWSELKQL 156



 Score = 62.8 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVA 215
            K +LQE A       P Y    R GPDH PRF   V  +G          + R AE  A
Sbjct: 2   YKNQLQELAQRSCFNLPSYACI-REGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAA 60

Query: 216 AAEVLKRE 223
           A   L   
Sbjct: 61  AEVALNEL 68


>gi|322712474|gb|EFZ04047.1| 60S ribosomal protein L3 [Metarhizium anisopliae ARSEF 23]
          Length = 392

 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/259 (16%), Positives = 74/259 (28%), Gaps = 60/259 (23%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           L +AL   S   +   +   L FLG  I+   +   L   +       L     +    E
Sbjct: 98  LARALITPSADANGSFNNSNLAFLGSTIINYHVLEYLVCKWPRLPMAILYEALRAFSGQE 157

Query: 83  TCSQVARELDLAS----------------------------FIRVSSDLRKDVCSFMTS- 113
           +  QVAR   + +                            ++R            M+S 
Sbjct: 158 SLQQVARRWGVEAAAAPGEEVDAGLLQWKADGVQLVNTRWGYVRSEVGKDSSYRRGMSSR 217

Query: 114 -IQADVV---------------------------ESLIAALYLDGGIEVAGTFVDKYWKQ 145
            +  DV                            ++++ ++Y   G E A +FV  +   
Sbjct: 218 VVLDDVFGDALSKPDNAGRQGVDSLQNEAFASFVQAVVGSIYAHCGREAAKSFVTSHILS 277

Query: 146 RALKSGKFRRD--AKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQ 202
           R     +  +      EL      +    P  ++   +G     P F V +        +
Sbjct: 278 RQFDPSELFQFQLPTRELAMLCAREGFEAPVARLESETGRLSKTPVFVVGIYSGKEKLGE 337

Query: 203 GMDCSKRAAEQVAAAEVLK 221
           G   S   A + A+  VLK
Sbjct: 338 GAGPSLDIARRKASMNVLK 356


>gi|134109497|ref|XP_776863.1| hypothetical protein CNBC3540 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50259543|gb|EAL22216.1| hypothetical protein CNBC3540 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 875

 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 22/129 (17%)

Query: 19  NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR---- 74
           +  L  +ALT  S  +    +YERLE LGD +L   I+  ++ H   A   E S++    
Sbjct: 448 HPELALQALTAPSSQNVTPWTYERLEILGDTLLKFFITIHVYLHGGGANSREDSLKVWQD 507

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY-LDGGIE 133
            + LVS  T +  A +L L  F+                  AD+VE++I A Y  D   +
Sbjct: 508 RHKLVSNRTLTANAIKLGLVEFL-----------------LADIVEAIIGASYGRDKNFD 550

Query: 134 VAGTFVDKY 142
              + +   
Sbjct: 551 NVISTLIHL 559



 Score = 65.5 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 71/252 (28%), Gaps = 48/252 (19%)

Query: 11  KRIGYAFANRSLLEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           + +GY F  +   E  +   S+S+    +   E  + LG+ +L L +   L   +     
Sbjct: 604 EILGYKFKRKRRYEDVI---SMSNQPHARRIRENYKMLGNAVLDLHVIEFLLAKYPEEGP 660

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVS--------------------------SD 102
           G LS       +      +A EL L   ++                            S+
Sbjct: 661 GSLSNMKTFRTTEGLRCALATELGLQDLLKDGDERAERELGRATYFMRDAKAQADAGLSE 720

Query: 103 LRKDVCSFMTSIQADVV-----ESLIAALYLDGGI--EVAGTFVDKYWKQRALK----SG 151
             +    +   +  +       E +  A++ D G   E      D +      K      
Sbjct: 721 EEQGGIHYWDGVAVNHFTGSIIEVIYGAIFQDSGFSLEHTQRIFDNHIVPFIEKYCKGPS 780

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
                 K  L  W  AK      Y      GP        VV       A+    +   A
Sbjct: 781 ASDLHPKGLLTRWMQAKGCA---YWKLDAVGP---KLCEGVVTCHDQDVARCKAFTTHVA 834

Query: 212 EQVAAAEVLKRE 223
            +    E +KR 
Sbjct: 835 VRNVCEEAIKRL 846


>gi|158186641|ref|NP_001103376.1| double-stranded RNA-binding protein Staufen homolog 1 isoform 1
           [Mus musculus]
 gi|123240382|emb|CAM17301.1| staufen (RNA binding protein) homolog 1 (Drosophila) [Mus musculus]
          Length = 495

 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 82/200 (41%), Gaps = 23/200 (11%)

Query: 41  ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET--CSQVARELD---LAS 95
           ERLE     + G        N  + ++  E++++ N  V+ E+   +QVARE     + +
Sbjct: 79  ERLE-----VNGREAEEENLNKSEISQVFEIALKRNLPVNFESFLLTQVARESGPPHMKN 133

Query: 96  FI-RVSSDLRKDVCSFMTSIQA--DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
           F+ RVS           +   +  +   +++  L     +      V    K+++  + K
Sbjct: 134 FVTRVSVGEFVGEGEGKSKKISKKNAARAVLEQLRRLPPLPAVER-VKPRIKKKSQPTCK 192

Query: 153 FR--------RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
            +         +  + L +   AK    PEY +    G      F + V++ G   A+G+
Sbjct: 193 LQTAPDYGQGMNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGV 251

Query: 205 DCSKRAAEQVAAAEVLKREG 224
             +K+ A++ AA  +L+  G
Sbjct: 252 GTNKKVAKRNAAENMLEILG 271


>gi|74219068|dbj|BAE26678.1| unnamed protein product [Mus musculus]
          Length = 592

 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 82/200 (41%), Gaps = 23/200 (11%)

Query: 41  ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET--CSQVARELD---LAS 95
           ERLE     + G        N  + ++  E++++ N  V+ E+   +QVARE     + +
Sbjct: 176 ERLE-----VNGREAEEENLNKSEISQVFEIALKRNLPVNFESFLLTQVARESGPPHMKN 230

Query: 96  FI-RVSSDLRKDVCSFMTSIQA--DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
           F+ RVS           +   +  +   +++  L     +      V    K+++  + K
Sbjct: 231 FVTRVSVGEFVGEGEGKSKKISKKNAARAVLEQLRRLPPLPAVER-VKPRIKKKSQPTCK 289

Query: 153 FR--------RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
            +         +  + L +   AK    PEY +    G      F + V++ G   A+G+
Sbjct: 290 LQTAPDYGQGMNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGV 348

Query: 205 DCSKRAAEQVAAAEVLKREG 224
             +K+ A++ AA  +L+  G
Sbjct: 349 GTNKKVAKRNAAENMLEILG 368


>gi|74198083|dbj|BAE35221.1| unnamed protein product [Mus musculus]
          Length = 575

 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 82/200 (41%), Gaps = 23/200 (11%)

Query: 41  ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET--CSQVARELD---LAS 95
           ERLE     + G        N  + ++  E++++ N  V+ E+   +QVARE     + +
Sbjct: 159 ERLE-----VNGREAEEENLNKSEISQVFEIALKRNLPVNFESFLLTQVARESGPPHMKN 213

Query: 96  FI-RVSSDLRKDVCSFMTSIQA--DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
           F+ RVS           +   +  +   +++  L     +      V    K+++  + K
Sbjct: 214 FVTRVSVGEFVGEGEGKSKKISKKNAARAVLEQLRRLPPLPAVER-VKPRIKKKSQPTCK 272

Query: 153 FR--------RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
            +         +  + L +   AK    PEY +    G      F + V++ G   A+G+
Sbjct: 273 LQTAPDYGQGMNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGV 331

Query: 205 DCSKRAAEQVAAAEVLKREG 224
             +K+ A++ AA  +L+  G
Sbjct: 332 GTNKKVAKRNAAENMLEILG 351


>gi|74145338|dbj|BAE36128.1| unnamed protein product [Mus musculus]
          Length = 583

 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 82/200 (41%), Gaps = 23/200 (11%)

Query: 41  ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET--CSQVARELD---LAS 95
           ERLE     + G        N  + ++  E++++ N  V+ E+   +QVARE     + +
Sbjct: 167 ERLE-----VNGREAEEENLNKSEISQVFEIALKRNLPVNFESFLLTQVARESGPPHMKN 221

Query: 96  FI-RVSSDLRKDVCSFMTSIQA--DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
           F+ RVS           +   +  +   +++  L     +      V    K+++  + K
Sbjct: 222 FVTRVSVGEFVGEGEGKSKKISKKNAARAVLEQLRRLPPLPAVER-VKPRIKKKSQPTCK 280

Query: 153 FR--------RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
            +         +  + L +   AK    PEY +    G      F + V++ G   A+G+
Sbjct: 281 LQTAPDYGQGMNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGV 339

Query: 205 DCSKRAAEQVAAAEVLKREG 224
             +K+ A++ AA  +L+  G
Sbjct: 340 GTNKKVAKRNAAENMLEILG 359


>gi|170037189|ref|XP_001846442.1| tar RNA binding protein [Culex quinquefasciatus]
 gi|167880196|gb|EDS43579.1| tar RNA binding protein [Culex quinquefasciatus]
          Length = 390

 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 1/73 (1%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
            +   +    LQE   A+    P Y+     G  H+ +FT+   +       G   SK+ 
Sbjct: 168 DEPSGNPIGWLQEMCMARRWPPPTYETEMEVGLPHERQFTIACAVL-KYREVGKGKSKKI 226

Query: 211 AEQVAAAEVLKRE 223
           A++ AA  + +R 
Sbjct: 227 AKRQAAQRMWQRL 239



 Score = 44.3 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205
             + LQE   ++ G+TP+Y +    G  H+P F   V       A G  
Sbjct: 78  PISVLQELL-SRRGITPQYDLMQVEGAVHEPTFRYRVSYQDKD-AMGTG 124


>gi|157119564|ref|XP_001659426.1| tar RNA binding protein (trbp) [Aedes aegypti]
 gi|108875294|gb|EAT39519.1| tar RNA binding protein (trbp) [Aedes aegypti]
          Length = 329

 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           LQE   A+    P Y+     G  H+ +FT+   +       G   SK+ A++ AA  + 
Sbjct: 165 LQEMCMARRWPPPTYETEMEVGLPHERQFTIACAVL-KYREVGKGKSKKIAKRQAAQRMW 223

Query: 221 KRE 223
           +R 
Sbjct: 224 QRL 226



 Score = 46.2 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 140 DKYWKQRALKSGKFRRD----AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
           D    + ALK+     +      + LQE   ++ G+TP+Y +    G  H+P F   V  
Sbjct: 45  DALPIEEALKTELTGTNNMKTPISVLQELL-SRRGITPQYDLIQVEGAVHEPTFRYRVSY 103

Query: 196 SGLAPAQGMD 205
                A G  
Sbjct: 104 QDKD-AMGTG 112


>gi|330933507|ref|XP_003304192.1| hypothetical protein PTT_16685 [Pyrenophora teres f. teres 0-1]
 gi|311319337|gb|EFQ87704.1| hypothetical protein PTT_16685 [Pyrenophora teres f. teres 0-1]
          Length = 591

 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 66/162 (40%), Gaps = 16/162 (9%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHS--------YQESYERLEFLGDRILGL 53
           +A R   +E+ IGY F ++    +AL  ++ +            ++  RL  LGDR L L
Sbjct: 84  AAARVGRVEESIGYTFKHKLYCIEALKQTNSTTPLYFQGVAINTDNNRRLALLGDRALDL 143

Query: 54  LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
            +S + F  +      + +      V+    +    +++L   + + +           +
Sbjct: 144 ALSEIWF--YTGNTLADYTAMSLKTVTRAALNTQGLKINLDKNLILVAGATGAT----PN 197

Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
             A+  E+L+ A+Y+D G +V    V +      L   +F R
Sbjct: 198 QVAETFEALLGAVYVDSGHDVEA--VKRVINTVQLDQNRFLR 237


>gi|148985144|ref|ZP_01818383.1| ribonuclease III [Streptococcus pneumoniae SP3-BS71]
 gi|147922589|gb|EDK73707.1| ribonuclease III [Streptococcus pneumoniae SP3-BS71]
          Length = 79

 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 5/66 (7%)

Query: 1  MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ----ESYERLEFLGDRILGLLIS 56
          M  L+ + L+      FA+++LLE A TH+S ++ ++       ERLEFLGD +L LLIS
Sbjct: 1  MKELQ-TVLKNHFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLIS 59

Query: 57 TLLFNH 62
            L+ +
Sbjct: 60 EYLYKN 65


>gi|50417953|gb|AAH77753.1| Stau2-B-prov protein [Xenopus laevis]
          Length = 644

 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 3/95 (3%)

Query: 132 IEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
           IE    ++ +  K     S ++ +  +  + L +   AK    PEY +    G      F
Sbjct: 319 IEKPRIYIKRRPKNIIKASPEYGQGMNPISRLAQIQQAKKEKEPEYVLLSERGIQRRREF 378

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            + V++ G   A G   +K+ A++ AA  +L + G
Sbjct: 379 IMQVKV-GEEAATGTGPNKKTAKRNAAEAMLLQLG 412



 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             + P+YK+    GP H   FTV + +      Q    S + A+  AA+  L
Sbjct: 58  NRIQPQYKLLDERGPAHSKLFTVQLTLGEQTW-QAESTSIKKAQHAAASLAL 108



 Score = 42.4 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 2/45 (4%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           E +  +      ++V   SGP H   F   V + G   A+G   S
Sbjct: 252 EISLKRNLPL-SFEVIKESGPPHMKSFVTRVMV-GEFTAEGEGNS 294


>gi|47210542|emb|CAF93934.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1479

 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 1348 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK 1405

Query: 79   VSAETCSQVARELDLASFIRVS 100
            VS     ++ ++  L S + VS
Sbjct: 1406 VSNCNLYRLGKKKGLPSRMVVS 1427


>gi|297849274|ref|XP_002892518.1| hypothetical protein ARALYDRAFT_471071 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338360|gb|EFH68777.1| hypothetical protein ARALYDRAFT_471071 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 376

 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214
            K+ LQE+A      TP Y+     GP H   F   V ++G+      G   +++AAEQ 
Sbjct: 16  FKSRLQEYAQKYKLQTPVYETVKE-GPSHKSFFQSTVILNGVRYNSLPGF-FNRKAAEQS 73

Query: 215 AAAEVLKRE 223
           AA   L+  
Sbjct: 74  AAEVALQEL 82



 Score = 52.8 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 24/63 (38%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           K  LQE+A       P Y+           +FT  VEI G+        +K+ AE  A  
Sbjct: 103 KNLLQEYAQKMNYAIPLYQCQRIETLGRATQFTCTVEIGGIKYTGAATRTKKDAEISAGR 162

Query: 218 EVL 220
             L
Sbjct: 163 TAL 165


>gi|241643146|ref|XP_002409536.1| secreted protein, putative [Ixodes scapularis]
 gi|215501378|gb|EEC10872.1| secreted protein, putative [Ixodes scapularis]
          Length = 353

 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 60/149 (40%), Gaps = 22/149 (14%)

Query: 15  YAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
           YAF ++ LL +AL H + +     S  YE L+F+G   L  +++  +  +    ++  + 
Sbjct: 192 YAFKDQDLLIRALLHPAKARQLGSSISYEPLDFIGHFALHFVLARHMVRNGTRKEKASMH 251

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRK------------------DVCSFMTSI 114
                 +  E C+ +A +  L  ++ +     K                     +   S 
Sbjct: 252 NLMTEALRQEACAFLAAKNHLDLYVFLDDGQEKRAMTEYATAARAQDYAGRSSLANQKSF 311

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYW 143
             ++ +S+  A+Y+D G +     +++ +
Sbjct: 312 LHNIFKSVAGAVYVDSGYDP--DVLERIY 338


>gi|328771050|gb|EGF81090.1| hypothetical protein BATDEDRAFT_23768 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 380

 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/240 (18%), Positives = 85/240 (35%), Gaps = 53/240 (22%)

Query: 31  SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90
           S +      ++RLEFLGD +L  L+   L+        G LS     LV  +  + V+ +
Sbjct: 52  SGTGKLGSMFQRLEFLGDAVLSYLVMQHLYKITPPLNPGGLSKLCAELVCNQFLACVSIQ 111

Query: 91  LDLASFIRVSSDLRK--------------------------------------DVCSFMT 112
           + L  +IR +    +                                      +  +   
Sbjct: 112 IGLVKYIRHTDMTMEAAIGRFTAWVQGYLASESSTPLPISTSATQIASARMFWNKGNTAP 171

Query: 113 SIQADVVESLIAALYLDGGIEVAG-------TFVDKYWKQRALKSGKFRR---DAKTELQ 162
               DV ES++ A+++D   ++         T +  +W +     G       +   EL+
Sbjct: 172 KTAGDVYESMLGAVFVDSQFDIHCVQSMFDITVISPWWWRFTSLFGGESMIYENPVAELR 231

Query: 163 EWAHAKFG-VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             +++ F  V  +Y  T+  G  H    T  +    +  AQ +   +R A++ AA   ++
Sbjct: 232 TLSYSLFKCVKIDY--TYEYGL-HGGT-TATITYHNMVLAQCLGTGQRDAKKAAACTAVE 287


>gi|328767757|gb|EGF77805.1| hypothetical protein BATDEDRAFT_27056 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 380

 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/240 (18%), Positives = 85/240 (35%), Gaps = 53/240 (22%)

Query: 31  SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90
           S +      ++RLEFLGD +L  L+   L+        G LS     LV  +  + V+ +
Sbjct: 52  SGTGKLGSMFQRLEFLGDAVLSYLVMQHLYKITPPLNPGGLSKLCAELVCNQFLACVSIQ 111

Query: 91  LDLASFIRVSSDLRK--------------------------------------DVCSFMT 112
           + L  +IR +    +                                      +  +   
Sbjct: 112 IGLVKYIRHTDMTMEAAIGRFTAWVQGYLASESSTPLPISTSATQIASARMFWNKGNTAP 171

Query: 113 SIQADVVESLIAALYLDGGIEVAG-------TFVDKYWKQRALKSGKFRR---DAKTELQ 162
               DV ES++ A+++D   ++         T +  +W +     G       +   EL+
Sbjct: 172 KTAGDVYESMLGAVFVDSQFDIHCVQSMFDITVISPWWWRFTSLFGGESMIYENPVAELR 231

Query: 163 EWAHAKFG-VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             +++ F  V  +Y  T+  G  H    T  +    +  AQ +   +R A++ AA   ++
Sbjct: 232 TLSYSLFKCVKIDY--TYEYGL-HGGT-TATITYHNMVLAQCLGTGQRDAKKAAACTAVE 287


>gi|224146035|ref|XP_002325855.1| predicted protein [Populus trichocarpa]
 gi|222862730|gb|EEF00237.1| predicted protein [Populus trichocarpa]
          Length = 281

 Score = 69.3 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  LQ+ A  +    P Y  T +SG  H P F   VEI G+        +K+ AE  AA
Sbjct: 214 YKNLLQDMAQREGCGLPTY-FTEKSGEAHAPTFISTVEIDGVNFTGKEARNKKQAEMSAA 272

Query: 217 AEV 219
              
Sbjct: 273 KIA 275



 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVA 215
            K++LQ+ +  +    P+Y+VT   G +H P F   V +   L        S + A+  A
Sbjct: 2   YKSKLQQLSQQRGWEIPKYEVTKE-GQEHSPHFYATVTVDATLFSTPFPSSSSKKAQNAA 60

Query: 216 AAEV 219
           A   
Sbjct: 61  AKLA 64



 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
            K +LQ +A  +    P Y    R GP H  RF   V ++G   
Sbjct: 136 FKNQLQTYAQKRNFTRPVYSC-ERVGPPHAIRFKCKVTVNGQTY 178


>gi|45387553|ref|NP_991124.1| double-stranded RNA-binding protein Staufen homolog 1 [Danio rerio]
 gi|40807139|gb|AAH65333.1| Staufen, RNA binding protein, homolog 1 (Drosophila) [Danio rerio]
          Length = 636

 Score = 69.3 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V ++G   A+GM  SK+ A++ 
Sbjct: 320 MNPISRLAQIQQAKKEKEPEYTLVTERGLPRRREFVMQVSVAGQN-AEGMGPSKKVAKRN 378

Query: 215 AAAEVLKREG 224
           AA ++L+  G
Sbjct: 379 AAEKMLELLG 388



 Score = 59.7 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 37/90 (41%), Gaps = 10/90 (11%)

Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHA-----KFGVTPEYKVTFRSGPDHDPRFTVVV 193
           + +   +   +  +   + K+   E +       K  +  +++V   +G  H   F V V
Sbjct: 200 ILQQITEMTDEPAQENLN-KS---EISQVFEIALKRNMPVDFEVLKEAGAPHMKSFVVRV 255

Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            + G    +G   SK+ A++ AA  VL+  
Sbjct: 256 VV-GEFAGEGEGKSKKIAKKQAAIAVLEEL 284



 Score = 58.9 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             + PEYK+    GP H   F+V + +           S + A+  AA+  L +
Sbjct: 20  NKIQPEYKLLSEEGPAHSKIFSVRLTLGDQHW-DAEGTSIKKAQHSAASSALAQ 72


>gi|321476628|gb|EFX87588.1| hypothetical protein DAPPUDRAFT_221551 [Daphnia pulex]
          Length = 200

 Score = 69.3 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L EW   +    P+Y+V   SGP H   + +  ++      +G   SK+AA+ VAA ++L
Sbjct: 134 LTEWCLTRLSNLPDYRVVRTSGPSHSKTYFMTCKLGDRV-TEGEGKSKKAAKNVAAGKML 192

Query: 221 K 221
           +
Sbjct: 193 Q 193



 Score = 40.1 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAA 217
           +   E           Y +    G  H   F + + +  L  + +G+  +K  A+  AA 
Sbjct: 19  SVFHELCTKFDFGVAMYNLVAEQGEPHSRTFLMNLTVDMLGISVEGIGLTKMQAKHDAAY 78

Query: 218 EVL 220
           +++
Sbjct: 79  KMM 81


>gi|321456685|gb|EFX67786.1| hypothetical protein DAPPUDRAFT_115168 [Daphnia pulex]
          Length = 216

 Score = 69.3 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSY--QESYERLEFLGDRILGLLISTLLFNHF 63
            + +E  +GY F ++  L+  LTH S + +    E  +RLE LGD++LG L+  + +   
Sbjct: 31  LAVIETTLGYEFRHKENLKLPLTHISTNPNKVPSEDSDRLETLGDKLLGTLVMAICYTTC 90

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDL 93
            +   GEL+   + +   +T + +A     
Sbjct: 91  PTYGAGELTNLTSMITCNDTFAVLAECAGF 120


>gi|302782383|ref|XP_002972965.1| hypothetical protein SELMODRAFT_441949 [Selaginella moellendorffii]
 gi|302823467|ref|XP_002993386.1| hypothetical protein SELMODRAFT_431451 [Selaginella moellendorffii]
 gi|300138817|gb|EFJ05571.1| hypothetical protein SELMODRAFT_431451 [Selaginella moellendorffii]
 gi|300159566|gb|EFJ26186.1| hypothetical protein SELMODRAFT_441949 [Selaginella moellendorffii]
          Length = 386

 Score = 69.3 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  LQE A       P Y  T RSGP H P FT VVE++G+        +K+ AE+ AA
Sbjct: 88  FKNLLQETAQRANVPLPTYTTT-RSGPGHLPVFTCVVEVAGMNFTGDAGKTKKQAEKNAA 146

Query: 217 AEV---LKR 222
                 LK+
Sbjct: 147 MAAWATLKQ 155



 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
            K +LQE A       P Y    R GPDH PRF   V  +G  
Sbjct: 2   YKNQLQELAQRSCFNLPAYSCI-REGPDHAPRFKAAVNFNGEV 43


>gi|293336145|ref|NP_001169453.1| hypothetical protein LOC100383324 [Zea mays]
 gi|224029475|gb|ACN33813.1| unknown [Zea mays]
          Length = 459

 Score = 69.3 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGMDCSKRAAEQ 213
            K+ LQE    +    P Y+ T R GP H P F   V ++G   +   +G   S + A  
Sbjct: 2   YKSRLQELCQKRRWAPPLYEPT-REGPAHAPLFRATVVVNGERFSSRDEGE-KSLKEAYN 59

Query: 214 VAAAEVLKRE 223
           +AA       
Sbjct: 60  LAAMAAFDNL 69



 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 3/67 (4%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQV 214
           + K  LQE    +    P Y  T     ++   F   VEI G     G    +K+ AE  
Sbjct: 177 NYKNLLQELVQKEGFPLPIYN-TASDVSNYSAAFVSTVEIRG-VTFHGKPGNTKKQAEMN 234

Query: 215 AAAEVLK 221
           AA    +
Sbjct: 235 AAKSAFE 241



 Score = 58.9 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 10/69 (14%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-----APAQGMDCSKRAA 211
            K++LQ +A  +  + P Y+     G  H P F   V I G              + + A
Sbjct: 95  YKSQLQIYAQKRGKLLPSYRPIH-GGSLHAPLFKSEVTIDGQTFESPEYC----HTMKEA 149

Query: 212 EQVAAAEVL 220
           E VAA   L
Sbjct: 150 ETVAAKVAL 158


>gi|145506903|ref|XP_001439412.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|74830350|emb|CAI39053.1| Ribonuclease with two RNaseIII domains [Paramecium tetraurelia]
 gi|124406596|emb|CAK72015.1| unnamed protein product [Paramecium tetraurelia]
          Length = 632

 Score = 69.3 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 64/133 (48%), Gaps = 20/133 (15%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           ++E  + Y      ++E+A+  SS   +++ +YE LE LGD +L  +++  +F  ++   
Sbjct: 334 SVESILNYQ-----VVEEAIVTSS--SNFKRNYENLELLGDSVLKYVVTVDIFRQYELLD 386

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFI-------------RVSSDLRKDVCSFMTSI 114
           EGE++   + L+     +Q+  +L L  +I              V+  +  D      S 
Sbjct: 387 EGEMTSLRSRLIMNTFLAQLFEQLGLQHYIINQDLHFKQIRNPLVNDMISSDNKQLQISQ 446

Query: 115 QADVVESLIAALY 127
           +AD+ E+++  ++
Sbjct: 447 KADIYEAIVGGVF 459



 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 52/142 (36%), Gaps = 28/142 (19%)

Query: 15  YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF-------NHFDS-- 65
           Y F N  L E A+            Y+RLEFLGD  + LL+ + +F           +  
Sbjct: 504 YKFNNPQLFEIAI--------NPLQYDRLEFLGDAAIELLVISYIFRAAREKQQRNPNWI 555

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
              G LS     L+  +   +    + L   I           + +  +  D+ ES+ AA
Sbjct: 556 LNPGLLSTWKQQLLGNKFMGEQTIRMGLKPHI-----------NEIPKLYGDIFESVAAA 604

Query: 126 LYLDGGIEVAGTFVDKYWKQRA 147
           + LD G +         +K+  
Sbjct: 605 ILLDSGWKGLNQVYGSLYKKHM 626


>gi|170027969|ref|XP_001841869.1| staufen [Culex quinquefasciatus]
 gi|167868339|gb|EDS31722.1| staufen [Culex quinquefasciatus]
          Length = 939

 Score = 69.3 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 1/85 (1%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
               K+   +      +  + L +   A+    PEY +    G      F + V  SG  
Sbjct: 631 RNLIKENGEEDPLDMVNPISRLMQIQQARKEKEPEYTLVEERGMARRREFIMEVLASGKT 690

Query: 200 PAQGMDCSKRAAEQVAAAEVLKREG 224
            A G+  +K+ A++ AA  +L   G
Sbjct: 691 -ASGVGPTKKIAKKEAAESLLVMLG 714



 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +Y++T  SGP H  RFTV +++           S + A+  AA E +
Sbjct: 283 QYRLTGESGPAHKKRFTVTLKLGDEEY-TAEGPSIKKAQHSAANEAI 328



 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 32/75 (42%), Gaps = 2/75 (2%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
                 +   + + E A  +  +  +++V    GP H   FT + ++ G    +G    K
Sbjct: 529 DPNSELKSPISLVHELALKR-KMAVQFEVHSEKGPPHMKVFTTICKV-GTIVTEGEGNGK 586

Query: 209 RAAEQVAAAEVLKRE 223
           + +++ AA ++L   
Sbjct: 587 KISKKRAAEKMLDEL 601


>gi|302793885|ref|XP_002978707.1| hypothetical protein SELMODRAFT_418544 [Selaginella moellendorffii]
 gi|300153516|gb|EFJ20154.1| hypothetical protein SELMODRAFT_418544 [Selaginella moellendorffii]
          Length = 675

 Score = 69.3 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVA 215
            K  LQE A       P Y    RSGP H P FT  V + G     G    +K+ AE+ A
Sbjct: 91  YKNLLQETAQRAGVPLPIYTTV-RSGPGHLPVFTCTVGVGG-MIFTGEAAKTKKQAEKNA 148

Query: 216 AAEV---LKR 222
           A      LK+
Sbjct: 149 AMTAWSSLKQ 158



 Score = 52.0 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
            K +LQE A       P Y    R GPDH PRF   V  +G  
Sbjct: 5   FKNQLQELAQRSCFNLPAYSCI-REGPDHAPRFKATVNFNGEV 46


>gi|302805769|ref|XP_002984635.1| hypothetical protein SELMODRAFT_120579 [Selaginella moellendorffii]
 gi|300147617|gb|EFJ14280.1| hypothetical protein SELMODRAFT_120579 [Selaginella moellendorffii]
          Length = 190

 Score = 69.3 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVA 215
            K  LQE A       P Y    RSGP H P FT  V + G     G    +K+ AE+ A
Sbjct: 88  YKNLLQETAQRAGVPLPIYTTV-RSGPGHLPVFTCTVGVGG-MIFTGEAAKTKKQAEKNA 145

Query: 216 AAEV---LKR 222
           A      LK+
Sbjct: 146 AMTAWSSLKQ 155



 Score = 52.0 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
            K +LQE A       P Y    R GPDH PRF   V  +G  
Sbjct: 2   FKNQLQELAQRSCFNLPAYSCI-REGPDHAPRFKATVNFNGEV 43


>gi|255578155|ref|XP_002529947.1| double-stranded RNA binding protein, putative [Ricinus communis]
 gi|223530577|gb|EEF32455.1| double-stranded RNA binding protein, putative [Ricinus communis]
          Length = 464

 Score = 69.3 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 6/71 (8%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215
            K  LQE A       P+Y  TFRSG  H P FT  VE++G+    G    +K+ AE+ A
Sbjct: 88  YKNLLQEIAQRVGAPLPQY-TTFRSGLGHQPVFTGTVELAGIT-FTGEPAKNKKQAEKNA 145

Query: 216 AAEV---LKRE 223
           A      LK+ 
Sbjct: 146 AMAAWSSLKQL 156



 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 26/69 (37%), Gaps = 10/69 (14%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA-----PAQGMDCSKRAA 211
            K +LQE A       P Y    R GPDH PRF   V  +G              + R A
Sbjct: 2   YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFECPHYC----STLRQA 56

Query: 212 EQVAAAEVL 220
           E  AA   L
Sbjct: 57  EHSAAEVAL 65


>gi|322789739|gb|EFZ14905.1| hypothetical protein SINV_08859 [Solenopsis invicta]
          Length = 885

 Score = 69.3 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
             K   +    LQE   ++    P+Y +    G  H+ +FT+V  I       G   SK+
Sbjct: 166 EEKIVNNPIGALQEMCMSRHWPPPKYTMEGEEGLPHERQFTIVCSIL-KYREVGQGKSKK 224

Query: 210 AAEQVAAAEVLKRE 223
            A++ AA ++ +  
Sbjct: 225 VAKRQAAHKMWQAL 238



 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 7/57 (12%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG------LAPAQGMDCS 207
             + LQE   ++ G  P+Y++    G  H+P F   V ++       +  A G   S
Sbjct: 65  PVSVLQELL-SRRGTIPKYELVQIEGAIHEPTFRYRVTVTDVVEADPIVSAMGTGRS 120


>gi|255545984|ref|XP_002514052.1| conserved hypothetical protein [Ricinus communis]
 gi|223547138|gb|EEF48635.1| conserved hypothetical protein [Ricinus communis]
          Length = 412

 Score = 69.3 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVA 215
            K  LQE+A  K   TP Y+     GP H+P F   V ++ +         +++AAEQ A
Sbjct: 16  FKRRLQEYAQKKGLPTPLYETIKE-GPSHEPSFRSTVIVNDIRYDSLPGFLNRKAAEQSA 74

Query: 216 AAEVL 220
               L
Sbjct: 75  VEVAL 79


>gi|313243028|emb|CBY39738.1| unnamed protein product [Oikopleura dioica]
          Length = 324

 Score = 69.3 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             + LQE    K   TP Y +    G  H P F     +  L   +G   SK++A+  AA
Sbjct: 32  PISMLQELCQ-KLSKTPRYDLLTMEGRAHQPSFVFRCVVGDLT-GEGHGTSKKSAKHQAA 89

Query: 217 AEVLKRE 223
             VL + 
Sbjct: 90  ENVLAQL 96



 Score = 69.3 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           LQE   ++    P+Y +   +GP H   F +   +       G   SK+ A++ AA  +L
Sbjct: 132 LQELVVSRGWRLPDYSLASEAGPSHKKEFIICCSVE-KLKEYGSGSSKKVAKRNAAGAML 190

Query: 221 KRE 223
            R 
Sbjct: 191 SRM 193


>gi|320545024|ref|NP_001188796.1| loquacious, isoform D [Drosophila melanogaster]
 gi|318068436|gb|ADV37046.1| loquacious, isoform D [Drosophila melanogaster]
          Length = 359

 Score = 69.3 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA---PAQGMDCSKRAAEQ 213
             + LQE   ++ G+TP Y++    G  H+P F   V          A G   SK+ A+ 
Sbjct: 136 PVSILQELL-SRRGITPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKH 194

Query: 214 VAAAEVLKRE 223
            AA  ++ + 
Sbjct: 195 AAARALIDKL 204



 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 1/75 (1%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
            S K   +    LQE    +    P Y+     G  H+  FT+   I       G   SK
Sbjct: 243 ASDKTVGNPIGWLQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYRE-MGKGKSK 301

Query: 209 RAAEQVAAAEVLKRE 223
           + A+++AA  +  R 
Sbjct: 302 KIAKRLAAHRMWMRL 316


>gi|296237713|ref|XP_002763865.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog
           2-like [Callithrix jacchus]
          Length = 399

 Score = 69.3 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFMMQVKV-GNEVATGTGPNKKIAKKN 332

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 333 AAEAMLLQLG 342



 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 182 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 239

Query: 223 E 223
            
Sbjct: 240 L 240



 Score = 35.8 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 112 KIFYVQLTVGNNE-FLGEGKTRQAARHNAAMKALQAL 147


>gi|85724940|ref|NP_001033903.1| loquacious, isoform C [Drosophila melanogaster]
 gi|63376297|gb|AAY40789.1| loquacious [Drosophila melanogaster]
 gi|84795302|gb|ABC65897.1| loquacious, isoform C [Drosophila melanogaster]
          Length = 383

 Score = 69.3 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA---PAQGMDCSKRAAEQ 213
             + LQE   ++ G+TP Y++    G  H+P F   V          A G   SK+ A+ 
Sbjct: 136 PVSILQELL-SRRGITPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKH 194

Query: 214 VAAAEVLKRE 223
            AA  ++ + 
Sbjct: 195 AAARALIDKL 204



 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 1/75 (1%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
            S K   +    LQE    +    P Y+     G  H+  FT+   I       G   SK
Sbjct: 243 ASDKTVGNPIGWLQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYRE-MGKGKSK 301

Query: 209 RAAEQVAAAEVLKRE 223
           + A+++AA  +  R 
Sbjct: 302 KIAKRLAAHRMWMRL 316


>gi|313229252|emb|CBY23838.1| unnamed protein product [Oikopleura dioica]
          Length = 343

 Score = 69.3 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             + LQE    K   TP Y +    G  H P F     +  L   +G   SK++A+  AA
Sbjct: 51  PISMLQELCQ-KLSKTPRYDLLTMEGRAHQPSFVFRCVVGDLT-GEGHGTSKKSAKHQAA 108

Query: 217 AEVLKRE 223
             VL + 
Sbjct: 109 ENVLAQL 115



 Score = 69.3 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           LQE   ++    P+Y +   +GP H   F +   +       G   SK+ A++ AA  +L
Sbjct: 151 LQELVVSRGWRLPDYSLASEAGPSHKKEFIICCSVE-KLKEYGSGSSKKVAKRNAAGAML 209

Query: 221 KRE 223
            R 
Sbjct: 210 SRM 212


>gi|156394093|ref|XP_001636661.1| predicted protein [Nematostella vectensis]
 gi|156223766|gb|EDO44598.1| predicted protein [Nematostella vectensis]
          Length = 414

 Score = 69.3 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 5/67 (7%)

Query: 158 KTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           KT    L E+A  +  V PEY  +   G +    F   V ISG+   +G   SKR A+Q 
Sbjct: 214 KTPVAILHEYAQRELKVKPEY--SHTEGNNAATPFVAEVRISGMVYGKGEGASKRLAKQH 271

Query: 215 AAAEVLK 221
           AA   L+
Sbjct: 272 AAETALE 278


>gi|114682575|ref|XP_001166678.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
           isoform 3 [Pan troglodytes]
          Length = 502

 Score = 69.3 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 78/200 (39%), Gaps = 23/200 (11%)

Query: 41  ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET--CSQVARELD---LAS 95
           ERLE     + G        N  + ++  E++++ N  V+ E+    QVARE     + +
Sbjct: 86  ERLE-----VNGRESEEENLNKSEISQVFEIALKRNLPVNFESFPLKQVARESGPPHMKN 140

Query: 96  FI-RVSSDLRKDVCSFMTSIQA--DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
           F+ +VS           +   +  +   +++  L     +      V    K++     K
Sbjct: 141 FVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAVER-VKPRIKKKTKPIVK 199

Query: 153 FRR--------DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
            +         +  + L +   AK    PEY +    G      F + V++ G   A+G 
Sbjct: 200 PQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKV-GNHTAEGT 258

Query: 205 DCSKRAAEQVAAAEVLKREG 224
             +K+ A++ AA  +L+  G
Sbjct: 259 GTNKKVAKRNAAENMLEILG 278


>gi|82659091|ref|NP_001032405.1| double-stranded RNA-binding protein Staufen homolog 1 isoform c
           [Homo sapiens]
 gi|45758713|gb|AAS76636.1| staufen protein T5 variant [Homo sapiens]
 gi|45758715|gb|AAS76637.1| staufen protein T4 variant [Homo sapiens]
 gi|57208664|emb|CAI42820.1| staufen, RNA binding protein, homolog 1 (Drosophila) [Homo sapiens]
          Length = 502

 Score = 69.3 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 78/200 (39%), Gaps = 23/200 (11%)

Query: 41  ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET--CSQVARELD---LAS 95
           ERLE     + G        N  + ++  E++++ N  V+ E+    QVARE     + +
Sbjct: 86  ERLE-----VNGRESEEENLNKSEISQVFEIALKRNLPVNFESFPLKQVARESGPPHMKN 140

Query: 96  FI-RVSSDLRKDVCSFMTSIQA--DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
           F+ +VS           +   +  +   +++  L     +      V    K++     K
Sbjct: 141 FVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAVER-VKPRIKKKTKPIVK 199

Query: 153 FRR--------DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
            +         +  + L +   AK    PEY +    G      F + V++ G   A+G 
Sbjct: 200 PQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKV-GNHTAEGT 258

Query: 205 DCSKRAAEQVAAAEVLKREG 224
             +K+ A++ AA  +L+  G
Sbjct: 259 GTNKKVAKRNAAENMLEILG 278


>gi|24584110|ref|NP_723813.1| loquacious, isoform A [Drosophila melanogaster]
 gi|7298056|gb|AAF53296.1| loquacious, isoform A [Drosophila melanogaster]
 gi|71733134|gb|AAZ40192.1| R3D1-S [Drosophila melanogaster]
          Length = 419

 Score = 68.9 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA---PAQGMDCSKRAAEQ 213
             + LQE   ++ G+TP Y++    G  H+P F   V          A G   SK+ A+ 
Sbjct: 136 PVSILQELL-SRRGITPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKH 194

Query: 214 VAAAEVLKRE 223
            AA  ++ + 
Sbjct: 195 AAARALIDKL 204



 Score = 66.3 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 1/75 (1%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
            S K   +    LQE    +    P Y+     G  H+  FT+   I       G   SK
Sbjct: 243 ASDKTVGNPIGWLQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYRE-MGKGKSK 301

Query: 209 RAAEQVAAAEVLKRE 223
           + A+++AA  +  R 
Sbjct: 302 KIAKRLAAHRMWMRL 316


>gi|89114114|gb|ABD61648.1| R3D1 [Drosophila simulans]
          Length = 407

 Score = 68.9 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA---PAQGMDCSKRAAEQ 213
             + LQE   ++ G+TP Y++    G  H+P F   V          A G   SK+ A+ 
Sbjct: 103 PVSILQELL-SRRGITPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKH 161

Query: 214 VAAAEVLKRE 223
            AA  ++ + 
Sbjct: 162 AAARALIDKL 171


>gi|317419872|emb|CBN81908.1| Double-stranded RNA-binding protein Staufen homolog 2
           [Dicentrarchus labrax]
          Length = 618

 Score = 68.9 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 64/167 (38%), Gaps = 18/167 (10%)

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           E++++ N  V+ E   +       +   RV+           +   +       AAL + 
Sbjct: 214 EIALKRNLSVNFEVLKESGPPHMKSFLTRVTVGEFSAEGEGNSKKLSKKR----AALSIL 269

Query: 130 GGIEVAGTFV------DKYWKQR---ALKSGKF---RRDAKTELQEWAHAKFGVTPEYKV 177
             ++    F+        ++K+R    LK+G       +  + L +   AK    PEY +
Sbjct: 270 QDLKKL-PFIPAVEKPKTHYKKRTKTILKTGPDYGQGMNPISRLAQIQQAKKEKEPEYLL 328

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               G      F + V+++    A G   +K+ A++ AA  +L + G
Sbjct: 329 LSERGMPRRREFIMQVKVNNEV-ATGTGPNKKVAKRNAAEAMLLQLG 374



 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             + P+YK+    GP H   FTV + +      +    S + A+   AA+ L
Sbjct: 20  NRIQPQYKLLNERGPAHAKIFTVQLTLGEQVW-EAEGTSIKKAQHSTAAKAL 70


>gi|195641916|gb|ACG40426.1| double-stranded RNA binding motif family protein [Zea mays]
 gi|195644492|gb|ACG41714.1| double-stranded RNA binding motif family protein [Zea mays]
          Length = 352

 Score = 68.9 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 29/73 (39%), Gaps = 8/73 (10%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS----KRAAE 212
            K +LQE A       P Y  T R GPDH PRF   V  +G         S     R AE
Sbjct: 2   YKNQLQELAQRSCFSLPSYVCT-REGPDHAPRFRAAVTFNGETF---EGPSGCTTLRQAE 57

Query: 213 QVAAAEVLKREGI 225
             AA   L R  +
Sbjct: 58  HAAAEVALARLSL 70



 Score = 68.2 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  LQE AH      P Y    RSGP H P F+  VE++GL+ A     +K+ AE+ AA
Sbjct: 88  YKNLLQETAHRAGLKLPAYTTV-RSGPGHSPVFSSTVELAGLSFAGDPARTKKQAEKNAA 146

Query: 217 AEV---LKRE 223
                 LK+ 
Sbjct: 147 MAAWSSLKQM 156


>gi|226507212|ref|NP_001141877.1| hypothetical protein LOC100274020 [Zea mays]
 gi|194706274|gb|ACF87221.1| unknown [Zea mays]
          Length = 392

 Score = 68.9 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 29/73 (39%), Gaps = 8/73 (10%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS----KRAAE 212
            K +LQE A       P Y  T R GPDH PRF   V  +G         S     R AE
Sbjct: 2   YKNQLQELAQRSCFSLPSYVCT-REGPDHAPRFRAAVTFNGETF---EGPSGCTTLRQAE 57

Query: 213 QVAAAEVLKREGI 225
             AA   L R  +
Sbjct: 58  HAAAEVALARLSL 70



 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 4/69 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  LQE AH      P Y    RSGP H P F+  VE++GL+ A     +K+ AE+ AA
Sbjct: 88  YKNLLQETAHRAGLKLPAYTTV-RSGPGHSPVFSSTVELAGLSFAGDPARTKKQAEKNAA 146

Query: 217 AEV---LKR 222
                 LK+
Sbjct: 147 MAAWSSLKQ 155


>gi|195398117|ref|XP_002057671.1| GJ17975 [Drosophila virilis]
 gi|194141325|gb|EDW57744.1| GJ17975 [Drosophila virilis]
          Length = 481

 Score = 68.9 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 5/73 (6%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA---PAQGMDCSKRAAEQ 213
             + LQE   ++ G+TP Y++    G  H+P F   V          A G   SK+ A+ 
Sbjct: 151 PVSILQELL-SRRGITPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKH 209

Query: 214 VAAAEVLKRE-GI 225
            AA  ++ +  G+
Sbjct: 210 AAARALIDKLIGV 222



 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 1/73 (1%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
            K   +    LQE    +    P Y+     G  H+  FT+   I       G   SK+ 
Sbjct: 261 DKIVGNPIGWLQEMCMQRRWPPPSYETETEVGLPHERLFTIACTILNFRE-VGKGKSKKI 319

Query: 211 AEQVAAAEVLKRE 223
           A+++AA ++  R 
Sbjct: 320 AKRLAAHKMWTRL 332


>gi|296863410|pdb|3ADG|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular
           Implications Processing
 gi|296863411|pdb|3ADI|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular
           Implications Processing
 gi|296863412|pdb|3ADI|B Chain B, Structure Of Arabidopsis Hyl1 And Its Molecular
           Implications Processing
 gi|296863413|pdb|3ADI|C Chain C, Structure Of Arabidopsis Hyl1 And Its Molecular
           Implications Processing
          Length = 73

 Score = 68.9 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVA 215
            K+ LQE+A      TP Y++    GP H   F   V + G+         +++AAEQ A
Sbjct: 5   FKSRLQEYAQKYKLPTPVYEIVKE-GPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 63

Query: 216 AAEVLKRE 223
           A   L+  
Sbjct: 64  AEVALREL 71


>gi|226498844|ref|NP_001146621.1| hypothetical protein LOC100280218 [Zea mays]
 gi|219888055|gb|ACL54402.1| unknown [Zea mays]
 gi|224029829|gb|ACN33990.1| unknown [Zea mays]
          Length = 289

 Score = 68.9 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  LQE AH      P Y    RSGP H P F   VE++G A       +K+ A++ AA
Sbjct: 88  YKNLLQETAHRAGLKLPIYTTI-RSGPGHTPVFACTVELAGKAFTGNPGKTKKQAQKNAA 146

Query: 217 AEV---LKRE 223
                 LK+ 
Sbjct: 147 MAAWSELKKL 156



 Score = 62.0 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK-RAAEQVA 215
            K +LQE A       P Y    R GPDH PRF   V  +G      + CS  R AE  A
Sbjct: 2   YKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKATVNFNGEMFESPVFCSTLRQAEHAA 60

Query: 216 AAEVLKRE 223
           A   L   
Sbjct: 61  AEVALNEL 68


>gi|195434256|ref|XP_002065119.1| GK14845 [Drosophila willistoni]
 gi|194161204|gb|EDW76105.1| GK14845 [Drosophila willistoni]
          Length = 512

 Score = 68.9 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA---PAQGMDCSKRAAEQ 213
             + LQE   ++ G+TP Y++    G  H+P F   V          A G   SK+ A+ 
Sbjct: 178 PVSILQELL-SRRGITPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKH 236

Query: 214 VAAAEVLKRE 223
            AA  ++ + 
Sbjct: 237 AAARALIDKL 246



 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 1/73 (1%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
            K   +    LQE    +    P Y+     G  H+  FT+   I       G   SK+ 
Sbjct: 292 DKIVGNPIGWLQEMCMQRRWPPPSYETETELGLPHERLFTIACTILNYRE-VGKGKSKKI 350

Query: 211 AEQVAAAEVLKRE 223
           A+++AA ++  R 
Sbjct: 351 AKRLAAHKMWTRL 363


>gi|89114100|gb|ABD61641.1| R3D1 [Drosophila simulans]
 gi|89114102|gb|ABD61642.1| R3D1 [Drosophila simulans]
 gi|89114104|gb|ABD61643.1| R3D1 [Drosophila simulans]
 gi|89114106|gb|ABD61644.1| R3D1 [Drosophila simulans]
 gi|89114108|gb|ABD61645.1| R3D1 [Drosophila simulans]
 gi|89114110|gb|ABD61646.1| R3D1 [Drosophila simulans]
 gi|89114112|gb|ABD61647.1| R3D1 [Drosophila simulans]
          Length = 407

 Score = 68.9 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA---PAQGMDCSKRAAEQ 213
             + LQE   ++ G+TP Y++    G  H+P F   V          A G   SK+ A+ 
Sbjct: 103 PVSILQELL-SRRGITPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKH 161

Query: 214 VAAAEVLKRE 223
            AA  ++ + 
Sbjct: 162 AAARALIDKL 171


>gi|332027530|gb|EGI67607.1| RISC-loading complex subunit tarbp2 [Acromyrmex echinatior]
          Length = 343

 Score = 68.9 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           ELQE         PEY +    GP H   FT+  ++S      G+  +K+ A+  AA  +
Sbjct: 113 ELQELCAENNLHEPEYFLIQDVGPPHAKIFTIRCKVSNFEE-DGIATTKKQAKHDAAKRM 171

Query: 220 LKR 222
           + +
Sbjct: 172 VDK 174



 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             + LQE   AK G+TP+YK+    G  H   FT  V    L+ A G    K+ A+  AA
Sbjct: 5   PVSILQEMM-AKQGMTPDYKLIHDGGGRHVNTFTYRVTCDSLS-ATGTGRCKKDAKHEAA 62

Query: 217 AEVL 220
             +L
Sbjct: 63  KAML 66


>gi|195472607|ref|XP_002088591.1| GE18652 [Drosophila yakuba]
 gi|194174692|gb|EDW88303.1| GE18652 [Drosophila yakuba]
          Length = 465

 Score = 68.9 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA---PAQGMDCSKRAAEQ 213
             + LQE   ++ G+TP Y++    G  H+P F   V          A G   SK+ A+ 
Sbjct: 136 PVSILQELL-SRRGITPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKH 194

Query: 214 VAAAEVLKRE 223
            AA  ++ + 
Sbjct: 195 AAARALIDKL 204



 Score = 65.9 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 1/73 (1%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
            K   +    LQE    +    P Y+     G  H+  FT+   I       G   SK+ 
Sbjct: 245 DKIVGNPIGWLQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYRE-MGKGKSKKI 303

Query: 211 AEQVAAAEVLKRE 223
           A+++AA  +  R 
Sbjct: 304 AKRLAAHRMWMRL 316


>gi|89114096|gb|ABD61639.1| R3D1 [Drosophila melanogaster]
          Length = 407

 Score = 68.9 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA---PAQGMDCSKRAAEQ 213
             + LQE   ++ G+TP Y++    G  H+P F   V          A G   SK+ A+ 
Sbjct: 103 PVSILQELL-SRRGITPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKH 161

Query: 214 VAAAEVLKRE 223
            AA  ++ + 
Sbjct: 162 AAARALIDKL 171


>gi|19921250|ref|NP_609646.1| loquacious, isoform B [Drosophila melanogaster]
 gi|17945270|gb|AAL48692.1| RE14437p [Drosophila melanogaster]
 gi|22946404|gb|AAF53295.2| loquacious, isoform B [Drosophila melanogaster]
 gi|71733132|gb|AAZ40191.1| R3D1-L [Drosophila melanogaster]
 gi|220947980|gb|ACL86533.1| loqs-PB [synthetic construct]
 gi|220957210|gb|ACL91148.1| loqs-PB [synthetic construct]
          Length = 465

 Score = 68.9 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA---PAQGMDCSKRAAEQ 213
             + LQE   ++ G+TP Y++    G  H+P F   V          A G   SK+ A+ 
Sbjct: 136 PVSILQELL-SRRGITPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKH 194

Query: 214 VAAAEVLKRE 223
            AA  ++ + 
Sbjct: 195 AAARALIDKL 204



 Score = 65.9 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 1/75 (1%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
            S K   +    LQE    +    P Y+     G  H+  FT+   I       G   SK
Sbjct: 243 ASDKTVGNPIGWLQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYRE-MGKGKSK 301

Query: 209 RAAEQVAAAEVLKRE 223
           + A+++AA  +  R 
Sbjct: 302 KIAKRLAAHRMWMRL 316


>gi|148235090|ref|NP_001085239.1| staufen, RNA binding protein, homolog 1 [Xenopus laevis]
 gi|56698874|gb|AAW23135.1| Staufen 1 [Xenopus laevis]
          Length = 718

 Score = 68.9 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK G  PEY +    G      F + V++   A A+G   +K+ A++ 
Sbjct: 403 MNPISRLAQIQQAKKGKEPEYILITERGLPRRREFVMQVKVGNHA-AEGSGTNKKVAKRN 461

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 462 AAENMLEILG 471



 Score = 58.2 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           K  ++  ++VT  +GP H   F   V + G    +G   SK+ +++ AA  VL+  
Sbjct: 313 KRNMSVNFEVTKETGPPHMKSFLTKVIV-GEFLGEGEGKSKKISKKNAAIAVLEEL 367


>gi|33469621|gb|AAQ19853.1| staufen [Xenopus laevis]
          Length = 712

 Score = 68.9 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK G  PEY +    G      F + V++   A A+G   +K+ A++ 
Sbjct: 397 MNPISRLAQIQQAKKGKEPEYILITERGLPRRREFVMQVKVGNHA-AEGSGTNKKVAKRN 455

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 456 AAENMLEILG 465



 Score = 58.2 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           K  ++  ++VT  +GP H   F   V + G    +G   SK+ +++ AA  VL+  
Sbjct: 307 KRNMSVNFEVTKETGPPHMKSFLTKVIV-GEFLGEGEGKSKKISKKNAAIAVLEEL 361


>gi|89114084|gb|ABD61633.1| R3D1 [Drosophila melanogaster]
 gi|89114086|gb|ABD61634.1| R3D1 [Drosophila melanogaster]
 gi|89114088|gb|ABD61635.1| R3D1 [Drosophila melanogaster]
 gi|89114090|gb|ABD61636.1| R3D1 [Drosophila melanogaster]
 gi|89114092|gb|ABD61637.1| R3D1 [Drosophila melanogaster]
 gi|89114094|gb|ABD61638.1| R3D1 [Drosophila melanogaster]
 gi|89114098|gb|ABD61640.1| R3D1 [Drosophila melanogaster]
          Length = 407

 Score = 68.9 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA---PAQGMDCSKRAAEQ 213
             + LQE   ++ G+TP Y++    G  H+P F   V          A G   SK+ A+ 
Sbjct: 103 PVSILQELL-SRRGITPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKH 161

Query: 214 VAAAEVLKRE 223
            AA  ++ + 
Sbjct: 162 AAARALIDKL 171


>gi|49256219|gb|AAH74253.1| Stau1 protein [Xenopus laevis]
 gi|83405197|gb|AAI10922.1| Stau1 protein [Xenopus laevis]
          Length = 708

 Score = 68.9 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK G  PEY +    G      F + V++   A A+G   +K+ A++ 
Sbjct: 393 MNPISRLAQIQQAKKGKEPEYILITERGLPRRREFVMQVKVGNHA-AEGSGTNKKVAKRN 451

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 452 AAENMLEILG 461



 Score = 58.2 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           K  ++  ++VT  +GP H   F   V + G    +G   SK+ +++ AA  VL+  
Sbjct: 303 KRNMSVNFEVTKETGPPHMKSFLTKVIV-GEFLGEGEGKSKKISKKNAAIAVLEEL 357


>gi|164508744|emb|CAM07147.1| double stranded RNA activated protein kinase 1 [Tetraodon
           nigroviridis]
          Length = 667

 Score = 68.6 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E A  +      Y+     GPDH   F +V  I+  A  +G+  +K+ A+Q 
Sbjct: 2   KNYISLLNEQAQKEGWSL-RYEDVGCDGPDHFRTFKIVTIINDRAFPEGVGKNKKDAKQK 60

Query: 215 AAAEVLKREGIWT 227
           AA         WT
Sbjct: 61  AAENA------WT 67



 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 1/81 (1%)

Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
           +    K  ++ +    R+  + + E    K      + +  R GP H P+F   + I G 
Sbjct: 210 ITDMMKSVSVTTADRERNYISLINEHCQKKGFSH-SFVMVDRQGPSHGPQFYYQLSIDGH 268

Query: 199 APAQGMDCSKRAAEQVAAAEV 219
               G   + + A Q AA   
Sbjct: 269 KYPVGEGKTAKEARQNAAQLA 289


>gi|158261305|dbj|BAF82830.1| unnamed protein product [Homo sapiens]
          Length = 479

 Score = 68.6 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G   A G   +K+ A++ 
Sbjct: 274 MNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKN 332

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 333 AAGAMLLQLG 342



 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 182 EIALKRNMP-VSFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAATTVLQE 239

Query: 223 E 223
            
Sbjct: 240 L 240



 Score = 37.4 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 112 KIFYVQLTVGNNEFF-GEGKTRQAARHNAAMKALQAL 147


>gi|156387818|ref|XP_001634399.1| predicted protein [Nematostella vectensis]
 gi|156221482|gb|EDO42336.1| predicted protein [Nematostella vectensis]
          Length = 69

 Score = 68.6 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            LQE    K    PEYK     GP H  +F +VV + G   A G   SK+ A++ AA  +
Sbjct: 10  RLQEVTVKKGWQYPEYKDVKAKGPPHMRQFEMVVTV-GTLTATGKGRSKKDAKRSAANAM 68

Query: 220 L 220
           L
Sbjct: 69  L 69


>gi|16758178|ref|NP_445888.1| staufen RNA binding protein homolog 1 isoform 1 [Rattus norvegicus]
 gi|9754866|gb|AAF98119.1|AF227200_1 staufen isoform Stau+I6 [Rattus norvegicus]
          Length = 495

 Score = 68.6 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 81/200 (40%), Gaps = 23/200 (11%)

Query: 41  ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET--CSQVARELD---LAS 95
           ERLE     + G        N  + ++  E++++ N  V+ E+   +QVARE     + +
Sbjct: 79  ERLE-----VNGRESEEENLNKSEISQVFEIALKRNLPVNFESFPLTQVARESGPPHMKN 133

Query: 96  FI-RVSSDLRKDVCSFMTSIQA--DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
           F+ RVS           +   +  +   +++  L     +      V    K+++  + K
Sbjct: 134 FVTRVSVGEFVGEGEGKSKKISKKNAARAVLEQLRRLPPLPAVER-VKPRIKKKSQPTCK 192

Query: 153 FR--------RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
            +         +  + L +   AK    PEY +    G      F + V++ G   A+G 
Sbjct: 193 LQTAPDYGQGMNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGA 251

Query: 205 DCSKRAAEQVAAAEVLKREG 224
             +K+ A++ AA  +L+  G
Sbjct: 252 GTNKKVAKRNAAENMLEILG 271


>gi|224046380|ref|XP_002199282.1| PREDICTED: staufen homolog 2 [Taeniopygia guttata]
          Length = 680

 Score = 68.6 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G     G   +K+ A++ 
Sbjct: 378 MNPISRLAQIQQAKKEKEPEYVLLSERGMPRRREFVMQVKV-GNDTTTGTGPNKKIAKRN 436

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 437 AAEAMLLQLG 446



 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             + P+YK+    GP H   FTV + +      +    S + A+  AA++ L 
Sbjct: 92  NRIQPQYKLLNERGPAHAKMFTVQLTLGEQTW-EAEGSSIKKAQHAAASKALN 143



 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           K  +   ++V   SGP H   F   V + G   A+G   SK+ +++ AA  VL+  
Sbjct: 290 KRNIPVTFEVIKESGPPHMKSFVTRVTV-GEFTAEGEGNSKKLSKKRAAMAVLQEL 344



 Score = 37.0 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 216 KVFYVQLTVGNSEFF-GEGKTRQAARHNAAMKALQAL 251


>gi|219968357|emb|CAO98758.1| double-stranded RNA activated protein kinase 1 [Tetraodon
           nigroviridis]
          Length = 667

 Score = 68.6 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E A  +      Y+     GPDH   F +V  I+  A  +G+  +K+ A+Q 
Sbjct: 2   KNYISLLNEQAQKEGWSL-RYEDVGCDGPDHFRTFKIVTIINDRAFPEGVGKNKKDAKQK 60

Query: 215 AAAEVLKREGIWT 227
           AA         WT
Sbjct: 61  AAENA------WT 67



 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 1/81 (1%)

Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
           +    K  ++ +    R+  + + E    K      + +  R GP H P+F   + I G 
Sbjct: 210 ITDMMKSVSVTTADRERNYISLINEHCQKKGFSH-SFVMVDRQGPSHGPQFYYQLSIDGH 268

Query: 199 APAQGMDCSKRAAEQVAAAEV 219
               G   + + A Q AA   
Sbjct: 269 KYPVGEGKTAKEARQNAAQLA 289


>gi|41055520|ref|NP_957219.1| double-stranded RNA-binding protein Staufen homolog 2 [Danio rerio]
 gi|28277474|gb|AAH45292.1| Staufen, RNA binding protein, homolog 2 (Drosophila) [Danio rerio]
          Length = 653

 Score = 68.6 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 63/164 (38%), Gaps = 12/164 (7%)

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           E++++ N  V+ E   +       +   RV+           +   +    +L  ++  +
Sbjct: 261 EIALKRNLPVNFEVLKESGPPHMKSFLTRVTVGEFSAEGEGNSKKLSKKRAAL--SILQE 318

Query: 130 GGIEVAGTFVDK---YWKQR---ALKSGK---FRRDAKTELQEWAHAKFGVTPEYKVTFR 180
                    V+K   ++K+R    LK+G       +  + L +   AK    PEY +   
Sbjct: 319 LKKLPVLPVVEKPKVHYKKRPKTILKTGPEYGQGMNPISRLAQIQQAKKEKEPEYMLLSE 378

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            G      F + V++ G     G   +K+ A++ AA  +L + G
Sbjct: 379 RGMPRRREFIMQVKV-GTEVTTGTGPNKKVAKRNAAEAMLLQLG 421



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             + P+YK+    GP H   FTV + +           S + A+   A + L
Sbjct: 67  NRIQPQYKLLNEKGPAHAKIFTVQLCLGNQVWES-EGSSIKKAQHSTATKAL 117



 Score = 38.1 bits (88), Expect = 0.86,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 191 KVFYVQLTVGNNE-FIGEGRTRQAARHNAAMKALQAL 226


>gi|241949343|ref|XP_002417394.1| 60S ribosomal protein L3, mitochondrial precursor, putative
           [Candida dubliniensis CD36]
 gi|223640732|emb|CAX45045.1| 60S ribosomal protein L3, mitochondrial precursor, putative
           [Candida dubliniensis CD36]
          Length = 407

 Score = 68.6 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 67/219 (30%), Gaps = 50/219 (22%)

Query: 46  LGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLA----------- 94
           LG  +L   ++  L  H+            +SL+   T S++ +   +            
Sbjct: 147 LGKSLLSYYVTEYLLIHYPRLPMKIHQAAIDSLMGNLTLSEIGKSWGIEIDEVSKLDRFL 206

Query: 95  ----SFIRVSS-----------DLRKDVCSFMTSI------------------QADVVES 121
                F++                  +  ++                       A  V++
Sbjct: 207 GQESEFMKFGRLRYLYDQDKSDKFYNNNGNYKNVTGIEEIIDEEGKLSQQDLAYASAVKA 266

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHA-KFGVTPEYKVT 178
           +I  LY   G  +A  F++ +   R +   +    +   +EL       +F      ++ 
Sbjct: 267 IIGGLYTHCGESIAKEFINDHILSRKIPLDQMFEFKRPISELIRLCDKLEFKQPVSIRLI 326

Query: 179 FRSGP--DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
             +G    H P+F   V +      +G+  S + A+  A
Sbjct: 327 AETGRLSAH-PQFLAGVFVGNDKIGEGIGSSLKEAQIRA 364


>gi|255543655|ref|XP_002512890.1| double-stranded RNA binding protein, putative [Ricinus communis]
 gi|223547901|gb|EEF49393.1| double-stranded RNA binding protein, putative [Ricinus communis]
          Length = 477

 Score = 68.6 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 34/71 (47%), Gaps = 6/71 (8%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215
            K  LQE AH      P Y    RSGP H P FT  VE++G+    G    +K+ AE+ A
Sbjct: 91  YKNLLQETAHRAGLNLPVYTTI-RSGPGHVPTFTCTVELAGMN-FTGEPAKTKKQAEKNA 148

Query: 216 AAE---VLKRE 223
           A      LKR 
Sbjct: 149 AIAAWSALKRM 159



 Score = 62.0 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 26/69 (37%), Gaps = 8/69 (11%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK----RAAE 212
            K +LQE A       P Y    R GPDH PRF   V  +G         S     R AE
Sbjct: 5   FKNQLQELAQRSCFNLPSYACV-REGPDHAPRFKASVNFNGEIFES---PSYCTTLRQAE 60

Query: 213 QVAAAEVLK 221
             AA   L 
Sbjct: 61  HAAAEVALN 69


>gi|307215189|gb|EFN89961.1| Interferon-inducible double stranded RNA-dependent protein kinase
           activator A [Harpegnathos saltator]
          Length = 381

 Score = 68.6 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 1/84 (1%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
               + +     K   +    LQE   ++    P+Y +    G  H+ +FT+V  I    
Sbjct: 153 QNLQELQTYGEEKVMNNPIGALQEMCMSRHWPPPKYTMEGEEGLPHERQFTIVCSIL-KY 211

Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223
              G   SK+ A++ AA ++ +  
Sbjct: 212 REVGQGKSKKVAKRHAAHKMWQAL 235



 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG----LAPAQGMDCS 207
             + LQE   ++ G  P+Y++    G  H+P F   V ++     +  A G   S
Sbjct: 64  PVSVLQELL-SRRGTIPKYELVQIEGAIHEPTFRYRVTVADVVDPIVSAMGTGRS 117


>gi|255713568|ref|XP_002553066.1| KLTH0D08140p [Lachancea thermotolerans]
 gi|238934446|emb|CAR22628.1| KLTH0D08140p [Lachancea thermotolerans]
          Length = 374

 Score = 68.6 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 71/232 (30%), Gaps = 36/232 (15%)

Query: 26  ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCS 85
           A T SS+  S       L   G  +L   ++      +       L+   ++ +S    +
Sbjct: 123 AFT-SSVPTSNFYDNHGLNIFGKNLLTYHVTRQTMAKYPRLPTVVLNAAVDAYISQSVLA 181

Query: 86  QVARELD--------LASFIR-------VSS--------------DLRKDVCSFMTSIQA 116
            V R           L  ++R       +                +L         +  A
Sbjct: 182 SVGRSWGIELENSSVLDRYLREEPIQVSLGKLRFFNNALKREDGVELITSHNFSEDAAYA 241

Query: 117 DVVESLIAALY---LDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGV 171
             V S+I AL+    +     A  F+D +   R L   +  +      EL      +   
Sbjct: 242 LAVRSVIGALWAYTHETDPTFAFRFIDDHILSRKLDVTRIFQFEQPARELAVLCRRENLS 301

Query: 172 TPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            P  K+   SG     P F V V        +G   S + A+  AA + L +
Sbjct: 302 PPVSKLLAESGRLSKAPVFIVGVFSGAEKLGEGFGSSLKEAKARAATDALMK 353


>gi|194860648|ref|XP_001969628.1| GG23848 [Drosophila erecta]
 gi|190661495|gb|EDV58687.1| GG23848 [Drosophila erecta]
          Length = 464

 Score = 68.6 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA---PAQGMDCSKRAAEQ 213
             + LQE   ++ G+TP Y++    G  H+P F   V          A G   SK+ A+ 
Sbjct: 135 PVSILQELL-SRRGITPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKH 193

Query: 214 VAAAEVLKRE 223
            AA  ++ + 
Sbjct: 194 AAARALIDKL 203



 Score = 65.5 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 1/73 (1%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
            K   +    LQE    +    P Y+     G  H+  FT+   I       G   SK+ 
Sbjct: 244 DKIVGNPIGWLQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYRE-MGKGKSKKI 302

Query: 211 AEQVAAAEVLKRE 223
           A+++AA  +  R 
Sbjct: 303 AKRLAAHRMWMRL 315


>gi|255583419|ref|XP_002532469.1| double-stranded RNA binding protein, putative [Ricinus communis]
 gi|223527827|gb|EEF29925.1| double-stranded RNA binding protein, putative [Ricinus communis]
          Length = 289

 Score = 68.6 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS-KRAAEQVA 215
            K  LQE+   +    P Y+     G  HDP+F   V + G         S ++ AEQ  
Sbjct: 14  YKNRLQEYTQRQSLQLPIYQTVNE-GYPHDPKFRSTVLVDGEEYTSHNTFSHRKEAEQDV 72

Query: 216 AAEVL 220
           A   L
Sbjct: 73  AKLAL 77



 Score = 52.0 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           K+ L E+A       P Y    + G    P F      +G+     +  +K+ AEQ+AA 
Sbjct: 102 KSILNEYAVKMQLEMPTYNTVKQGGL--FPIFVSSSVFNGVTYNGDIGRTKKEAEQLAAR 159

Query: 218 EV 219
             
Sbjct: 160 AA 161


>gi|324502096|gb|ADY40922.1| Double-stranded RNA-binding protein Staufen [Ascaris suum]
          Length = 906

 Score = 68.6 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 31/72 (43%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
            + +  + L +   A+    P++++    G      F V V  +     +G   +K+ A+
Sbjct: 470 HQINPVSRLMQVMQARKENEPKFQLVAEHGQSRYKEFVVEVTCADGLRCEGTGPNKKLAK 529

Query: 213 QVAAAEVLKREG 224
           + AA  +L R G
Sbjct: 530 RAAAEAMLARIG 541



 Score = 57.4 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 9/84 (10%)

Query: 148 LKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLA 199
           L+S    ++ K     +++ E    +  +  E+++    GP HD  + +  ++     + 
Sbjct: 344 LQSATVNKNGKPKSAISQIHE-CALQMRMNVEFEILREEGPAHDRHYLLRCKMISPDEVI 402

Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223
            A G   SK+ A+Q A A +L + 
Sbjct: 403 IADGEGGSKKIAKQNACALMLTKL 426



 Score = 41.2 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           EYK+   SGP H  RFTV + ++      G   S
Sbjct: 81  EYKLMDESGPAHKKRFTVSLILTPDQVFDGCGAS 114


>gi|301754405|ref|XP_002913051.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog
           1-like [Ailuropoda melanoleuca]
          Length = 684

 Score = 68.6 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 70/174 (40%), Gaps = 18/174 (10%)

Query: 67  KEGELSVRFNSLVSAET--CSQVARELD---LASFI-RVSSDLRKDVCSFMTSIQADVVE 120
           +  E++++ N  V+ E+    QVARE     + SF+ RVS           +   +    
Sbjct: 289 QVFEIALKRNLPVNFESFPLKQVARESGPPHMKSFVTRVSVGEFVGEGEGKSKKISKKN- 347

Query: 121 SLIAALYLDGGIEVAGTF--VDKYWKQRALKSGKFR--------RDAKTELQEWAHAKFG 170
           + IA L     +    TF  V    K++     + +         +  + L +   AK  
Sbjct: 348 AAIAVLEELKKLPPLPTFERVKPRIKKKTKSIVRLQGSTDCSQGMNPISRLAQIQQAKKE 407

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             PEY +    G      F + V++ G   A+G   +K+ A++ AA  +L+  G
Sbjct: 408 KEPEYLLLTERGLPRRREFVMQVKV-GNHTAEGTGTNKKVAKRNAAENMLEILG 460



 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             + PEYK+    GP H   FTV + +      +    S + A+  AAA+ L+
Sbjct: 92  NKIQPEYKLLREQGPAHCKVFTVQLTLGDQHW-EAEGTSIKKAQHTAAAKALE 143


>gi|195115174|ref|XP_002002139.1| GI17218 [Drosophila mojavensis]
 gi|193912714|gb|EDW11581.1| GI17218 [Drosophila mojavensis]
          Length = 454

 Score = 68.6 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 5/73 (6%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA---PAQGMDCSKRAAEQ 213
             + LQE   ++ G+TP Y++    G  H+P F   V          A G   SK+ A+ 
Sbjct: 124 PVSILQELL-SRRGITPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKH 182

Query: 214 VAAAEVLKRE-GI 225
            AA  ++ +  G+
Sbjct: 183 AAARALIDKLIGV 195



 Score = 65.5 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 1/73 (1%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
            K   +    LQE    +    P Y+     G  H+  FT+   I       G   SK+ 
Sbjct: 234 DKIVGNPIGWLQEMCMQRRWPPPSYETETEVGLPHERLFTIACTILNYHE-VGKGKSKKI 292

Query: 211 AEQVAAAEVLKRE 223
           A+++AA ++  R 
Sbjct: 293 AKRLAAHKMWTRL 305


>gi|226494720|ref|NP_001142144.1| hypothetical protein LOC100274309 [Zea mays]
 gi|194707342|gb|ACF87755.1| unknown [Zea mays]
          Length = 515

 Score = 68.6 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  LQE A       P Y  T RSG  H P FT  VE++G+        +K+ AE+ AA
Sbjct: 88  YKNLLQEVAQRVGAPLPLY-TTERSGVGHLPVFTCTVELAGITFTGDHAKNKKQAEKNAA 146

Query: 217 AE---VLKRE 223
           +     LK+ 
Sbjct: 147 SAAWSALKQL 156



 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
            K +LQE A       P Y    R GPDH PRF   V  +G 
Sbjct: 2   YKNQLQELAQRSCFNLPSYTCL-REGPDHAPRFKAAVNFNGE 42


>gi|195578966|ref|XP_002079333.1| loquacious [Drosophila simulans]
 gi|194191342|gb|EDX04918.1| loquacious [Drosophila simulans]
          Length = 464

 Score = 68.6 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA---PAQGMDCSKRAAEQ 213
             + LQE   ++ G+TP Y++    G  H+P F   V          A G   SK+ A+ 
Sbjct: 135 PVSILQELL-SRRGITPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKH 193

Query: 214 VAAAEVLKRE 223
            AA  ++ + 
Sbjct: 194 AAARALIDKL 203



 Score = 64.7 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           LQE    +    P Y+     G  H+  FT+   I       G   SK+ A+++AA  + 
Sbjct: 254 LQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYRE-MGKGKSKKIAKRLAAHRMW 312

Query: 221 KRE 223
            R 
Sbjct: 313 VRL 315


>gi|224104957|ref|XP_002313634.1| predicted protein [Populus trichocarpa]
 gi|222850042|gb|EEE87589.1| predicted protein [Populus trichocarpa]
          Length = 484

 Score = 68.6 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVA 215
            K  LQE A  +    P YK+   SG  H P F   VEI G     +    SK+ AE  +
Sbjct: 201 YKNALQELAQREDLSMPVYKIIK-SGALHMPTFFSYVEIEGEKFYGKA-GKSKKEAELKS 258

Query: 216 AAEV 219
           A   
Sbjct: 259 ARAA 262



 Score = 61.6 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAA 216
           KT+LQE  H +    P+Y      GPDH P F   V ++G++  +     S + A   AA
Sbjct: 3   KTKLQEVCHKRQWGLPKYSAMK-DGPDHTPCFKASVYVNGISFHSSASCKSSKDAHNDAA 61

Query: 217 AEV 219
              
Sbjct: 62  KMA 64


>gi|307172924|gb|EFN64091.1| Interferon-inducible double stranded RNA-dependent protein kinase
           activator A [Camponotus floridanus]
          Length = 376

 Score = 68.6 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 1/84 (1%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
               + ++    K   +    LQE   ++    P+Y +    G  H+ +FT+V  I    
Sbjct: 148 QNLQELQSYGEEKVVNNPIGALQEMCMSRHWPPPKYTMEGEEGLPHERQFTIVCSIL-KY 206

Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223
              G   SK+ A++ AA ++ +  
Sbjct: 207 REVGQGKSKKVAKRHAAHKMWQAL 230



 Score = 52.4 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             + LQE   ++ G  P+Y++    G  H+P F   V ++ +  A G   S
Sbjct: 64  PVSVLQELL-SRRGTIPKYELVQIEGAIHEPTFRYRVTVADVV-AMGTGRS 112


>gi|332029664|gb|EGI69553.1| Interferon-inducible double stranded RNA-dependent protein kinase
           activator A [Acromyrmex echinatior]
          Length = 377

 Score = 68.6 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 1/84 (1%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
               + +     K   +    LQE   ++    P+Y +    G  H+ +FT+V  I    
Sbjct: 149 QNLQELQTYGEEKIVNNPIGALQEMCMSRHWPPPKYSMEGEEGLPHERQFTIVCSIL-KY 207

Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223
              G   SK+ A++ AA ++ +  
Sbjct: 208 REVGQGKSKKVAKRHAAHKMWQAL 231



 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206
             + LQE   ++ G  P+Y++    G  H+P F   V ++ +  A G   
Sbjct: 65  PVSVLQELL-SRRGTIPKYELVQIEGAIHEPTFRYRVTVTDVV-AMGTGR 112


>gi|321468486|gb|EFX79471.1| hypothetical protein DAPPUDRAFT_244860 [Daphnia pulex]
          Length = 118

 Score = 68.6 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L EW   +    PEY+V  +SGP H   + +  ++S     +G+  SK+AA+  AA ++L
Sbjct: 52  LSEWRLTRHSTLPEYRVVRKSGPSHSKTYFMTCKLSERV-TEGVGKSKKAAKNDAAQKML 110

Query: 221 K 221
           +
Sbjct: 111 Q 111


>gi|316979346|gb|EFV62151.1| ribosome biogenesis protein BOP1 [Trichinella spiralis]
          Length = 983

 Score = 68.6 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 9/94 (9%)

Query: 135 AGTFVDKYWKQRALKSGKFRRD--------AKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
           A  F+ +    +  + G    D            LQE+   K  + P +      G  HD
Sbjct: 749 AKQFLLRLAAYKDDEQGGVNGDGSGKSNTVYVNVLQEFCIQKHYLKPVFTEEGMCGAQHD 808

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             F V VE+       G   SK+ A+Q AA  +L
Sbjct: 809 QTFFVSVELGEYKK-TGSGRSKKLAKQNAAHLML 841



 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           + L E    K G+TP Y++    G   D  F   + I  +  + G   SK+ A+Q AA
Sbjct: 668 SLLHEIC-GKKGLTPMYELLTSQGQGVDSLFVYRLCIDSVV-STGRGKSKKLAKQNAA 723


>gi|317156821|ref|XP_001826035.2| hypothetical protein AOR_1_660054 [Aspergillus oryzae RIB40]
          Length = 939

 Score = 68.6 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 1/88 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           LE  +GY F+++SL  +++TH S    Y   SY RL FLG  I+ L++   L        
Sbjct: 701 LEALLGYTFSDKSLAIESMTHPSCVGLYGTASYRRLSFLGAGIIELVVVRYLHRQKSFTS 760

Query: 68  EGELSVRFNSLVSAETCSQVARELDLAS 95
              L    +++ +    + +        
Sbjct: 761 SKRLQSLKSAVTNNMFLAFLCLTFHWEK 788



 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/137 (25%), Positives = 57/137 (41%), Gaps = 19/137 (13%)

Query: 16  AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
            F    LL  AL  S     ++  +  + F+GD I+  LI+  LF H     EG L+   
Sbjct: 526 RFERMDLLCIAL--SPTDDMHRHEFRSMAFIGDAIVKFLITRQLFLHHTLWHEGLLTSVK 583

Query: 76  NSLVSAETCSQVARELDLASFIR-------------VSSDLRKDVCSFMTSI----QADV 118
           +S+VS    +         S++              VS+ L K   +    +     AD+
Sbjct: 584 DSIVSDTGLAAALCHSGFGSYLITTRFNGKRWRPSFVSTTLSKSGPTRRRYVGAATVADM 643

Query: 119 VESLIAALYLDGGIEVA 135
           V++L  A +LD G++ A
Sbjct: 644 VKALAGAAFLDNGLDQA 660


>gi|213417911|ref|NP_001132989.1| interferon-inducible double stranded RNA-dependent protein kinase
           activator A isoform 2 [Homo sapiens]
 gi|21739361|emb|CAD38725.1| hypothetical protein [Homo sapiens]
 gi|119631440|gb|EAX11035.1| protein kinase, interferon-inducible double stranded RNA dependent
           activator, isoform CRA_b [Homo sapiens]
          Length = 302

 Score = 68.6 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
           K  K + +    LQE A       PEY ++   GP H   +T +  +       G   SK
Sbjct: 108 KQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESF-METGKGASK 166

Query: 209 RAAEQVAAAEVLKR 222
           + A++ AA + L +
Sbjct: 167 KQAKRNAAEKFLAK 180



 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 158 KTELQ---EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           KT +Q   E+      + P Y+        H P FT  V +  +    G   SK+ A+  
Sbjct: 22  KTPIQVLHEYGMKTKNI-PVYECERSDVQIHVPTFTFRVTVGDIT-CTGEGTSKKLAKHR 79

Query: 215 AAAEVLK 221
           AA   + 
Sbjct: 80  AAEAAIN 86


>gi|212291457|gb|ACJ23858.1| double-stranded RNA-dependent protein kinase [Oplegnathus
           fasciatus]
          Length = 704

 Score = 68.2 bits (166), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    L E+A        +Y      GPDH   FT  V ++G A   G+  +KR A+  A
Sbjct: 5   NYIARLNEFAQRTRSAL-KYNDLGCVGPDHIKTFTQRVVLNGKAYPDGVGKNKREAKHNA 63

Query: 216 AAEVLK 221
           A   LK
Sbjct: 64  AKNALK 69



 Score = 52.8 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           +     G   ++    R GP H+PRF   + I+      G   S + A++ AA   
Sbjct: 227 YCQKTNGSH-KFIEERRCGPPHNPRFFYKLVINDKDYPVGEGKSAKEAKKNAAQLA 281


>gi|156540328|ref|XP_001599266.1| PREDICTED: similar to adenosine deaminase, partial [Nasonia
           vitripennis]
          Length = 429

 Score = 68.2 bits (166), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 11/87 (12%)

Query: 141 KYWKQRALKSGKFRRD--AKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
           K  K  A+ + K  ++   K     L E           YKV  ++GP H P FT+ V+I
Sbjct: 150 KLLKTGAINAKKKHKNTQPKNAVCALNEL-----KAGATYKVVSQTGPTHAPIFTIAVQI 204

Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            G +  +G   +K+ A+  AA   L+ 
Sbjct: 205 DGQSY-EGKGRTKKMAKHAAAELALRN 230


>gi|149247898|ref|XP_001528336.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146448290|gb|EDK42678.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 389

 Score = 68.2 bits (166), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 62/219 (28%), Gaps = 41/219 (18%)

Query: 39  SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLA---- 94
           +   L  +G  ++   ++  L  H+        +   ++L+  E+   + R   +     
Sbjct: 130 NNYGLNVIGKVLMSYYVTEYLLLHYPRLPMSIHNAATDALIGTESLLSIGRSWGIEVDEV 189

Query: 95  -----------SFIRVSSDLRKD--VCSFMTSIQADVVE--------------------S 121
                       F++                     V E                    +
Sbjct: 190 SKLDRFLGQESEFLKYGRLRYMSDNKKENRVKDLPGVTEVLSLNSNLTQEDKAYTSAVTA 249

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTP-EYKVT 178
           ++  +Y   G   A  F+  +   R +   +  +     TEL           P   ++ 
Sbjct: 250 IVGGIYTHCGEVAAKEFILDHILSRKVPLSEMFQFEQPITELIRLCDKLQFQEPLSIRLI 309

Query: 179 FRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             +G     P+F   V +      +G+  S + A+  AA
Sbjct: 310 AETGRKSASPQFLAGVFVGNEKLGEGIGASLKEAQTRAA 348


>gi|238492895|ref|XP_002377684.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
 gi|220696178|gb|EED52520.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
          Length = 790

 Score = 68.2 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 1/88 (1%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           LE  +GY F+++SL  +++TH S    Y   SY RL FLG  I+ L++   L        
Sbjct: 552 LEALLGYTFSDKSLAIESMTHPSCVGLYGTASYRRLSFLGAGIIELVVVRYLHRQKSFTS 611

Query: 68  EGELSVRFNSLVSAETCSQVARELDLAS 95
              L    +++ +    + +        
Sbjct: 612 SKRLQSLKSAVTNNMFLAFLCLTFHWEK 639



 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/137 (25%), Positives = 57/137 (41%), Gaps = 19/137 (13%)

Query: 16  AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
            F    LL  AL  S     ++  +  + F+GD I+  LI+  LF H     EG L+   
Sbjct: 377 RFERMDLLCIAL--SPTDDMHRPEFRSMAFIGDAIVKFLITRQLFLHHTLWHEGLLTSVK 434

Query: 76  NSLVSAETCSQVARELDLASFIR-------------VSSDLRKDVCSFMTSI----QADV 118
           +S+VS    +         S++              VS+ L K   +    +     AD+
Sbjct: 435 DSIVSDTGLAAALCHSGFGSYLITTRFNGKRWRPFFVSTTLSKSGPTRRRYVGAATVADM 494

Query: 119 VESLIAALYLDGGIEVA 135
           V++L  A +LD G++ A
Sbjct: 495 VKALAGAAFLDNGLDQA 511


>gi|156340926|ref|XP_001620596.1| hypothetical protein NEMVEDRAFT_v1g222935 [Nematostella vectensis]
 gi|156205720|gb|EDO28496.1| predicted protein [Nematostella vectensis]
          Length = 171

 Score = 68.2 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            KT L +    ++    E+++  + GP HD  F V V ++G    +G   SK+ A+  AA
Sbjct: 56  FKTPLMQL--NEYKPGLEFRLVSQEGPPHDTTFVVAVTVNGQTY-EGKGSSKQRAKHDAA 112

Query: 217 AEVLK 221
            + L+
Sbjct: 113 EKALQ 117


>gi|321468344|gb|EFX79329.1| hypothetical protein DAPPUDRAFT_244966 [Daphnia pulex]
          Length = 96

 Score = 68.2 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L EW   +    PEY+V   SGP H   + +  ++S     +G   SK+AA+  AA ++L
Sbjct: 30  LSEWRFTRHSSLPEYRVVRTSGPSHSKTYFMTCKLSDRV-TEGEGKSKKAAKNDAAQKML 88

Query: 221 K 221
           +
Sbjct: 89  Q 89


>gi|27262833|emb|CAD59425.1| dsRNA-binding protein [Brassica oleracea var. botrytis]
          Length = 283

 Score = 68.2 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS----GLAPAQGMDCSKRAAE 212
            K+ LQE+A      TP Y+     GP H P F   V ++       P      +++AAE
Sbjct: 16  FKSRLQEYAQRYKLPTPLYETIKE-GPSHKPLFQSTVIVNYVRYDSLPGF---FNRKAAE 71

Query: 213 QVAAAEVLK 221
           Q AA   L+
Sbjct: 72  QSAAEVALQ 80



 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           K  LQE+A       P Y+          P+FT  VEI G+        +K+ AE
Sbjct: 103 KNLLQEYAQKMNYAIPLYQCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEAE 157


>gi|328769139|gb|EGF79183.1| hypothetical protein BATDEDRAFT_25727 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 380

 Score = 68.2 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 85/240 (35%), Gaps = 53/240 (22%)

Query: 31  SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90
           S +      ++RLEFLGD +L  L    L+        G LS     LV  +  + V+ +
Sbjct: 52  SGTGKLGSIFQRLEFLGDAVLSYLAMQHLYKITPPLNPGGLSKLCAELVCNQFLACVSIQ 111

Query: 91  LDLASFIRV--------------------------------------SSDLRKDVCSFMT 112
           + L  +IR                                       S+ L  +  +   
Sbjct: 112 IGLVKYIRHTDMTMEAAIGRFTAWVQGYLASESSTPLPISTSATQIASARLFWNKGNTAP 171

Query: 113 SIQADVVESLIAALYLDGGIEVAG-------TFVDKYWKQRALKSGKFRR---DAKTELQ 162
               DV ES++ A+++D   ++         T +  +W +     G       +   EL+
Sbjct: 172 KTAGDVYESMLGAVFVDSQFDIHCVQSMFDITVISPWWWRFTSLFGGESMIYENPVAELR 231

Query: 163 EWAHAKFG-VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             +++ F  V  +Y  T+  G  H    T  +    +  AQ +   +R A++ AA   +K
Sbjct: 232 TLSYSLFKCVKIDY--TYEYGL-HGGT-TATITYHNMVLAQCLGTGQRDAKKAAACTAVK 287


>gi|194765827|ref|XP_001965027.1| GF23153 [Drosophila ananassae]
 gi|190617637|gb|EDV33161.1| GF23153 [Drosophila ananassae]
          Length = 472

 Score = 68.2 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 5/73 (6%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA---PAQGMDCSKRAAEQ 213
             + LQE   ++ G+TP Y++    G  H+P F   V          A G   SK+ A+ 
Sbjct: 140 PVSILQELL-SRRGITPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKH 198

Query: 214 VAAAEVLKRE-GI 225
            AA  ++ +  G+
Sbjct: 199 AAARALIDKLIGV 211



 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           LQE    +    P Y+     G  H+  FT+   I       G   SK+ A+++AA  + 
Sbjct: 262 LQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYRE-MGKGKSKKIAKRLAAHRMW 320

Query: 221 KRE 223
            R 
Sbjct: 321 VRL 323


>gi|321468345|gb|EFX79330.1| hypothetical protein DAPPUDRAFT_244967 [Daphnia pulex]
          Length = 96

 Score = 68.2 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L EW   +    PEY+V  +SGP H   + +  ++S     +G   SK+AA+  AA ++L
Sbjct: 30  LSEWRFTRHSSLPEYRVVRKSGPSHSKTYFMTCKLSDRV-TEGEGKSKKAAKNDAAQKML 88

Query: 221 K 221
           +
Sbjct: 89  Q 89


>gi|296085908|emb|CBI31232.3| unnamed protein product [Vitis vinifera]
          Length = 494

 Score = 68.2 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAA 216
           KT LQE  H K    PEY  T + GP H+P F   V + GL+ +      S + A+  AA
Sbjct: 3   KTRLQELCHRKRWNPPEYS-TRKDGPPHNPTFIATVSVGGLSFSTDHPARSSKEAQSNAA 61

Query: 217 AEVLK 221
              ++
Sbjct: 62  GLAIQ 66



 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 30/76 (39%), Gaps = 5/76 (6%)

Query: 148 LKSGKFRRD----AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203
           L    F+ D     K  LQE A  +    P Y  T +SG  H P F   VEI G      
Sbjct: 225 LSPAGFQEDDYGVYKNLLQEMARKEGYQLPVYS-TEKSGVSHMPTFLSTVEIEGETFVGQ 283

Query: 204 MDCSKRAAEQVAAAEV 219
              +K+ AE  AA   
Sbjct: 284 KAKTKKLAEMNAAKAA 299



 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVA 215
            KT+LQ +A  +    P Y      GP H+ RF   V I            + + AE  A
Sbjct: 159 YKTQLQTYAQKRNLPLPMYSFESI-GPSHNCRFKSKVTIEEQTYESPDFFPTLKDAEHAA 217

Query: 216 AAEVL 220
           A   L
Sbjct: 218 AKLAL 222


>gi|225439221|ref|XP_002270719.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 581

 Score = 68.2 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAA 216
           KT LQE  H K    PEY  T + GP H+P F   V + GL+ +      S + A+  AA
Sbjct: 3   KTRLQELCHRKRWNPPEYS-TRKDGPPHNPTFIATVSVGGLSFSTDHPARSSKEAQSNAA 61

Query: 217 AEVLK 221
              ++
Sbjct: 62  GLAIQ 66



 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 30/76 (39%), Gaps = 5/76 (6%)

Query: 148 LKSGKFRRD----AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203
           L    F+ D     K  LQE A  +    P Y  T +SG  H P F   VEI G      
Sbjct: 298 LSPAGFQEDDYGVYKNLLQEMARKEGYQLPVYS-TEKSGVSHMPTFLSTVEIEGETFVGQ 356

Query: 204 MDCSKRAAEQVAAAEV 219
              +K+ AE  AA   
Sbjct: 357 KAKTKKLAEMNAAKAA 372



 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVA 215
            KT+LQ +A  +    P Y      GP H+ RF   V I            + + AE  A
Sbjct: 232 YKTQLQTYAQKRNLPLPMYSFESI-GPSHNCRFKSKVTIEEQTYESPDFFPTLKDAEHAA 290

Query: 216 AAEVL 220
           A   L
Sbjct: 291 AKLAL 295


>gi|296204404|ref|XP_002749315.1| PREDICTED: interferon-inducible double stranded RNA-dependent
           protein kinase activator A-like [Callithrix jacchus]
          Length = 302

 Score = 68.2 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
           K  K + +    LQE A       PEY ++   GP H   +T +  +       G   SK
Sbjct: 108 KQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESF-METGKGASK 166

Query: 209 RAAEQVAAAEVLKR 222
           + A++ AA + L +
Sbjct: 167 KQAKRNAAEKFLAK 180



 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 158 KTELQ---EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           KT +Q   E+      + P Y+        H P FT  V +  +    G   SK+ A+  
Sbjct: 22  KTPIQVLHEYGMKTKNI-PVYECERSDVQIHVPTFTFRVTVGDIT-CTGEGTSKKLAKHR 79

Query: 215 AAAEVLK 221
           AA   + 
Sbjct: 80  AAEAAIN 86


>gi|195351293|ref|XP_002042169.1| GM10477 [Drosophila sechellia]
 gi|194123993|gb|EDW46036.1| GM10477 [Drosophila sechellia]
          Length = 464

 Score = 68.2 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA---PAQGMDCSKRAAEQ 213
             + LQE   ++ G+TP Y++    G  H+P F   V          A G   SK+ A+ 
Sbjct: 135 PVSILQELL-SRRGITPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKH 193

Query: 214 VAAAEVLKRE 223
            AA  ++ + 
Sbjct: 194 AAARALIDKL 203



 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           LQE    +    P Y+     G  H+  FT+   I       G   SK+ A+++AA  + 
Sbjct: 254 LQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYRE-MGKGKSKKIAKRLAAHRMW 312

Query: 221 KRE 223
            R 
Sbjct: 313 VRL 315


>gi|149031451|gb|EDL86441.1| adenosine deaminase, RNA-specific, B2 [Rattus norvegicus]
          Length = 746

 Score = 68.2 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y++  ++GP H P F V VE++GL   +G   +K+ A+  AA
Sbjct: 127 PKNALVQL--HELKPGLQYRMVSQTGPVHAPVFAVAVEVNGLT-FEGTGPTKKKAKMRAA 183

Query: 217 AEVLK 221
              LK
Sbjct: 184 EMALK 188


>gi|148700329|gb|EDL32276.1| adenosine deaminase, RNA-specific, B2, isoform CRA_a [Mus musculus]
          Length = 742

 Score = 68.2 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y++  ++GP H P F V VE++GL   +G   +K+ A+  AA
Sbjct: 126 PKNALVQL--HELKPGLQYRMVSQTGPVHAPVFAVAVEVNGLT-FEGTGPTKKKAKMRAA 182

Query: 217 AEVLK 221
              LK
Sbjct: 183 EMALK 187


>gi|26337823|dbj|BAC32597.1| unnamed protein product [Mus musculus]
          Length = 701

 Score = 68.2 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y++  ++GP H P F V VE++GL   +G   +K+ A+  AA
Sbjct: 126 PKNALVQL--HELKPGLQYRMVSQTGPVHAPVFAVAVEVNGLT-FEGTGPTKKKAKMRAA 182

Query: 217 AEVLK 221
              LK
Sbjct: 183 EMALK 187


>gi|37590574|gb|AAH59822.1| Adarb2 protein [Mus musculus]
          Length = 701

 Score = 68.2 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y++  ++GP H P F V VE++GL   +G   +K+ A+  AA
Sbjct: 126 PKNALVQL--HELKPGLQYRMVSQTGPVHAPVFAVAVEVNGLT-FEGTGPTKKKAKMRAA 182

Query: 217 AEVLK 221
              LK
Sbjct: 183 EMALK 187


>gi|8699065|gb|AAF78580.1| RNA adenosine deaminase RED2 [Mus musculus]
          Length = 731

 Score = 68.2 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y++  ++GP H P F V VE++GL   +G   +K+ A+  AA
Sbjct: 116 PKNALVQL--HELKPGLQYRMVSQTGPVHAPVFAVAVEVNGLT-FEGTGPTKKKAKMRAA 172

Query: 217 AEVLK 221
              LK
Sbjct: 173 EMALK 177


>gi|8571466|gb|AAF76894.1|AF270495_1 RNA dependent adenosine deaminase 3 [Mus musculus]
          Length = 745

 Score = 68.2 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y++  ++GP H P F V VE++GL   +G   +K+ A+  AA
Sbjct: 126 PKNALVQL--HELKPGLQYRMVSQTGPVHAPVFAVAVEVNGLT-FEGTGPTKKKAKMRAA 182

Query: 217 AEVLK 221
              LK
Sbjct: 183 EMALK 187


>gi|74148073|dbj|BAE22359.1| unnamed protein product [Mus musculus]
          Length = 745

 Score = 68.2 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y++  ++GP H P F V VE++GL   +G   +K+ A+  AA
Sbjct: 126 PKNALVQL--HELKPGLQYRMVSQTGPVHAPVFAVAVEVNGLT-FEGTGPTKKKAKMRAA 182

Query: 217 AEVLK 221
              LK
Sbjct: 183 EMALK 187


>gi|31542106|ref|NP_443209.2| double-stranded RNA-specific editase B2 [Mus musculus]
 gi|33112435|sp|Q9JI20|RED2_MOUSE RecName: Full=Double-stranded RNA-specific editase B2; AltName:
           Full=RNA-dependent adenosine deaminase 3; AltName:
           Full=RNA-editing deaminase 2; AltName: Full=RNA-editing
           enzyme 2; AltName: Full=dsRNA adenosine deaminase B2
 gi|26329549|dbj|BAC28513.1| unnamed protein product [Mus musculus]
 gi|30851427|gb|AAH52426.1| Adenosine deaminase, RNA-specific, B2 [Mus musculus]
 gi|74224054|dbj|BAE23882.1| unnamed protein product [Mus musculus]
 gi|74226553|dbj|BAE23939.1| unnamed protein product [Mus musculus]
 gi|148700330|gb|EDL32277.1| adenosine deaminase, RNA-specific, B2, isoform CRA_b [Mus musculus]
          Length = 745

 Score = 68.2 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y++  ++GP H P F V VE++GL   +G   +K+ A+  AA
Sbjct: 126 PKNALVQL--HELKPGLQYRMVSQTGPVHAPVFAVAVEVNGLT-FEGTGPTKKKAKMRAA 182

Query: 217 AEVLK 221
              LK
Sbjct: 183 EMALK 187


>gi|18959240|ref|NP_579836.1| double-stranded RNA-specific editase B2 [Rattus norvegicus]
 gi|33112433|sp|P97616|RED2_RAT RecName: Full=Double-stranded RNA-specific editase B2; AltName:
           Full=RNA-dependent adenosine deaminase 3; AltName:
           Full=RNA-editing deaminase 2; AltName: Full=RNA-editing
           enzyme 2; AltName: Full=dsRNA adenosine deaminase B2
 gi|1814270|gb|AAB41862.1| double-stranded RNA specific adenosine deaminase [Rattus
           norvegicus]
          Length = 746

 Score = 68.2 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y++  ++GP H P F V VE++GL   +G   +K+ A+  AA
Sbjct: 127 PKNALVQL--HELKPGLQYRMVSQTGPVHAPVFAVAVEVNGLT-FEGTGPTKKKAKMRAA 183

Query: 217 AEVLK 221
              LK
Sbjct: 184 EMALK 188


>gi|83774779|dbj|BAE64902.1| unnamed protein product [Aspergillus oryzae]
          Length = 1256

 Score = 68.2 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 1/88 (1%)

Query: 9    LEKRIGYAFANRSLLEKALTHSSISHSY-QESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            LE  +GY F+++SL  +++TH S    Y   SY RL FLG  I+ L++   L        
Sbjct: 1018 LEALLGYTFSDKSLAIESMTHPSCVGLYGTASYRRLSFLGAGIIELVVVRYLHRQKSFTS 1077

Query: 68   EGELSVRFNSLVSAETCSQVARELDLAS 95
               L    +++ +    + +        
Sbjct: 1078 SKRLQSLKSAVTNNMFLAFLCLTFHWEK 1105



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/138 (26%), Positives = 56/138 (40%), Gaps = 21/138 (15%)

Query: 16  AFANRSLLEKALTHSSISHSYQESYER-LEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
            F    LL  AL   S +        R + F+GD I+  LI+  LF H     EG L+  
Sbjct: 843 RFERMDLLCIAL---SPTDDMHRHEFRSMAFIGDAIVKFLITRQLFLHHTLWHEGLLTSV 899

Query: 75  FNSLVSAETCSQVARELDLASFIR-------------VSSDLRKDVCSFMTSI----QAD 117
            +S+VS    +         S++              VS+ L K   +    +     AD
Sbjct: 900 KDSIVSDTGLAAALCHSGFGSYLITTRFNGKRWRPSFVSTTLSKSGPTRRRYVGAATVAD 959

Query: 118 VVESLIAALYLDGGIEVA 135
           +V++L  A +LD G++ A
Sbjct: 960 MVKALAGAAFLDNGLDQA 977


>gi|109097111|ref|XP_001110800.1| PREDICTED: interferon-inducible double stranded RNA-dependent
           protein kinase activator A-like [Macaca mulatta]
          Length = 251

 Score = 68.2 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
           K  K + +    LQE A       PEY ++   GP H   +T V  +       G   SK
Sbjct: 76  KQPKNQLNPVGSLQELAFHHGWRRPEYTLSQEGGPAHKREYTTVCRLEAF-METGKGASK 134

Query: 209 RAAEQVAAAEVLKR 222
           + A++ AA + L +
Sbjct: 135 KQAKRNAAEKFLAK 148



 Score = 37.0 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 4/59 (6%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
           K    P Y+        H P FT  V +  +   +G    K+  +  AA   +    IW
Sbjct: 2   KTKNIPVYECERSDVQIHVPTFTFRVTVGDIT-CRGEGTGKKLVKHRAAEAAI---NIW 56


>gi|73919457|sp|Q7ZW47|STAU2_DANRE RecName: Full=Double-stranded RNA-binding protein Staufen homolog 2
          Length = 606

 Score = 68.2 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 63/164 (38%), Gaps = 12/164 (7%)

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           E++++ N  V+ E   +       +   RV+           +   +    +L  ++  +
Sbjct: 214 EIALKRNLPVNFEVLKESGPPHMKSFLTRVTVGEFSAEGEGNSKKLSKKRAAL--SILQE 271

Query: 130 GGIEVAGTFVDK---YWKQR---ALKSGK---FRRDAKTELQEWAHAKFGVTPEYKVTFR 180
                    V+K   ++K+R    LK+G       +  + L +   AK    PEY +   
Sbjct: 272 LKKLPVLPVVEKPKVHYKKRPKTILKTGPEYGQGMNPISRLAQIQQAKKEKEPEYMLLSE 331

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            G      F + V++ G     G   +K+ A++ AA  +L + G
Sbjct: 332 RGMPRRREFIMQVKV-GTEVTTGTGPNKKVAKRNAAEAMLLQLG 374



 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             + P+YK+    GP H   FTV + +           S + A+   A + L
Sbjct: 20  NRIQPQYKLLNEKGPAHAKIFTVQLCLGNQVWES-EGSSIKKAQHSTATKAL 70



 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 144 KVFYVQLTVGNNE-FIGEGRTRQAARHNAAMKALQAL 179


>gi|308081633|ref|NP_001183890.1| hypothetical protein LOC100502483 [Zea mays]
 gi|238015288|gb|ACR38679.1| unknown [Zea mays]
          Length = 520

 Score = 68.2 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  LQE A       P Y  T RSG  H P FT  VE++G+  A     +K+ AE+ AA
Sbjct: 88  YKNLLQEVAQRVGAPLPLY-TTERSGLGHLPVFTCTVELAGITFAGDPAKNKKQAEKNAA 146

Query: 217 AE---VLKRE 223
           +     LK+ 
Sbjct: 147 SAAWSALKQL 156



 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
            K +LQE A       P Y    R GPDH PRF   V  +G 
Sbjct: 2   YKNQLQELAQRSCFNLPSYTCL-REGPDHAPRFKAAVNFNGE 42


>gi|281352310|gb|EFB27894.1| hypothetical protein PANDA_007403 [Ailuropoda melanoleuca]
          Length = 296

 Score = 68.2 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
           K  K + +    LQE A       PEY ++   GP H   +T +  +       G   SK
Sbjct: 102 KQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESF-METGKGASK 160

Query: 209 RAAEQVAAAEVLKR 222
           + A++ AA + L +
Sbjct: 161 KQAKRNAAEKFLAK 174



 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 158 KTELQ---EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           KT +Q   E+      + P Y+        H P FT  V +  +    G   SK+ A+  
Sbjct: 16  KTPIQVLHEYGMKTKNI-PVYECERSDVQIHVPTFTFRVTVGDIT-CTGEGTSKKLAKHR 73

Query: 215 AAAEVLK 221
           AA   + 
Sbjct: 74  AAEAAIN 80


>gi|57208663|emb|CAI42819.1| staufen, RNA binding protein, homolog 1 (Drosophila) [Homo sapiens]
          Length = 494

 Score = 68.2 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 3/94 (3%)

Query: 133 EVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           E     + K  K     S ++ +  +  + L +   AK    PEY +    G      F 
Sbjct: 178 ERVKPRIKKKTKPIVKTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFV 237

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           + V++ G   A+G   +K+ A++ AA  +L+  G
Sbjct: 238 MQVKV-GNHTAEGTGTNKKVAKRNAAENMLEILG 270



 Score = 58.9 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G    +G   SK+ +++ AA  VL+ 
Sbjct: 110 EIALKRNLP-VNFEVARESGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEE 167

Query: 223 E 223
            
Sbjct: 168 L 168


>gi|213417919|ref|NP_001132990.1| interferon-inducible double stranded RNA-dependent protein kinase
           activator A isoform 3 [Homo sapiens]
 gi|332209456|ref|XP_003253828.1| PREDICTED: interferon-inducible double stranded RNA-dependent
           protein kinase activator A isoform 2 [Nomascus
           leucogenys]
 gi|37955186|gb|AAP20061.1| HSD14 [Homo sapiens]
 gi|119631439|gb|EAX11034.1| protein kinase, interferon-inducible double stranded RNA dependent
           activator, isoform CRA_a [Homo sapiens]
          Length = 288

 Score = 68.2 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
           K  K + +    LQE A       PEY ++   GP H   +T +  +       G   SK
Sbjct: 94  KQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESF-METGKGASK 152

Query: 209 RAAEQVAAAEVLKR 222
           + A++ AA + L +
Sbjct: 153 KQAKRNAAEKFLAK 166



 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 158 KTELQ---EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           KT +Q   E+      + P Y+        H P FT  V +  +    G   SK+ A+  
Sbjct: 8   KTPIQVLHEYGMKTKNI-PVYECERSDVQIHVPTFTFRVTVGDIT-CTGEGTSKKLAKHR 65

Query: 215 AAAEVLK 221
           AA   + 
Sbjct: 66  AAEAAIN 72


>gi|218189128|gb|EEC71555.1| hypothetical protein OsI_03907 [Oryza sativa Indica Group]
          Length = 1030

 Score = 68.2 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 10/69 (14%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-----APAQGMDCSKRAA 211
            K++LQ +A  K  + P Y+   R GP H  RF  VV + G              + + A
Sbjct: 87  YKSQLQIYAQKKGKLLPSYQTI-REGPGHASRFKSVVTVDGKAFESPEYF----HTVKEA 141

Query: 212 EQVAAAEVL 220
           E  AA   L
Sbjct: 142 ESAAAKLAL 150



 Score = 58.9 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM--DCSKRAAEQV 214
            K+ LQE    +    PEY     +G  H P F   V ++G+          S + A  +
Sbjct: 2   YKSRLQELCQQRRWAPPEY-THRCAGLAHAPLFGATVSVNGVEFRTPEDAARSAKEAHNI 60

Query: 215 AAAEV 219
           AA   
Sbjct: 61  AAKAA 65



 Score = 55.1 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 22/66 (33%), Gaps = 3/66 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215
            K  LQE A       P Y  T   G    P F   V        QG    +K+ AE  A
Sbjct: 170 YKNLLQELAQKHGFSLPVYSTTS-DGSVQVPMFKSTVVFQD-GSFQGEPANTKKQAEMNA 227

Query: 216 AAEVLK 221
           A    +
Sbjct: 228 ARVAFQ 233


>gi|75251129|sp|Q5N8Z0|DRB1_ORYSJ RecName: Full=Double-stranded RNA-binding protein 1; AltName:
           Full=dsRNA-binding protein 1
 gi|56785214|dbj|BAD82066.1| putative dsRNA-binding protein ODB1 [Oryza sativa Japonica Group]
          Length = 441

 Score = 68.2 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 10/69 (14%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-----APAQGMDCSKRAA 211
            K++LQ +A  K  + P Y+   R GP H  RF  VV + G              + + A
Sbjct: 87  YKSQLQIYAQKKGKLLPSYQTI-REGPGHASRFKSVVTVDGKAFESPEYF----HTVKEA 141

Query: 212 EQVAAAEVL 220
           E  AA   L
Sbjct: 142 ESAAAKLAL 150



 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM--DCSKRAAEQV 214
            K+ LQE    +    PEY     +GP H P F   V ++G+          S + A  +
Sbjct: 2   YKSRLQELCQQRRWAPPEY-THRCAGPAHAPLFGATVSVNGVEFRTPEDAARSAKEAHNI 60

Query: 215 AAAEV 219
           AA   
Sbjct: 61  AAKAA 65



 Score = 55.1 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 22/66 (33%), Gaps = 3/66 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215
            K  LQE A       P Y  T   G    P F   V        QG    +K+ AE  A
Sbjct: 170 YKNLLQELAQKHGFSLPVYSTTS-DGSVQVPMFKSTVVFQD-GSFQGEPANTKKQAEMNA 227

Query: 216 AAEVLK 221
           A    +
Sbjct: 228 ARVAFQ 233


>gi|170044459|ref|XP_001849864.1| 39S ribosomal protein L44 [Culex quinquefasciatus]
 gi|167867604|gb|EDS30987.1| 39S ribosomal protein L44 [Culex quinquefasciatus]
          Length = 327

 Score = 68.2 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 78/240 (32%), Gaps = 41/240 (17%)

Query: 11  KRIGYAFANRSLLEKALTHSSI-SHSYQE--------------SYERLEFLGDRILGLLI 55
           +R+   F +  LL++A TH S  +   Q+                  L  LG  ++   +
Sbjct: 70  RRLSEQF-DAKLLQQAFTHRSFIAQEEQKQAEVGIVQPELGLSDNGELITLGGSLINQYV 128

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
              L        +  +      L S  + + V+  L     I  ++           ++ 
Sbjct: 129 EAFLLTALPKLPQEGIGAIVGHLTSDASLAHVSSHLGTKDIILAATFPVDQ------TLL 182

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG-------KFRRDAKTELQEWAHAK 168
           AD +++L+ AL    G E A  FV  +   +  +         +   D    L+E+   K
Sbjct: 183 ADTIKALVGALQRSSGDERAFLFVRDFICTQLNQQDVNEYWTIERPLD---LLKEYCQEK 239

Query: 169 FGVTPEYKVTFRSG-----PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               PE +     G       H+    V +  +      G       A   AA + L++ 
Sbjct: 240 KLGEPEPRSIGLVGKNTLLAAHN----VAIYCNKQFVGSGFGEDVDTAIDEAARDALRQL 295


>gi|164508746|emb|CAM07148.1| double stranded RNA activated protein kinase 2 [Tetraodon
           nigroviridis]
          Length = 424

 Score = 67.8 bits (165), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E A  +      Y+     GPDH  RF V   ++G A  +G   +KR A+  
Sbjct: 2   KNYISLLNEQAQKQGWSL-RYEDVGCDGPDHIKRFRVRAIVNGRAFPEGAGKNKRDAKHK 60

Query: 215 AAAEV 219
           AA   
Sbjct: 61  AAENA 65


>gi|62901980|gb|AAY18941.1| DKFZp564I0123 [synthetic construct]
          Length = 337

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
           K  K + +    LQE A       PEY ++   GP H   +T +  +       G   SK
Sbjct: 143 KQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESF-METGKGASK 201

Query: 209 RAAEQVAAAEVLKR 222
           + A++ AA + L +
Sbjct: 202 KQAKRNAAEKFLAK 215



 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 158 KTELQ---EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           KT +Q   E+      + P Y+        H P FT  V +  +    G   SK+ A+  
Sbjct: 57  KTPIQVLHEYGMKTKNI-PVYECERSDVQIHVPTFTFRVTVGDIT-CTGEGTSKKLAKHR 114

Query: 215 AAAEVLK 221
           AA   + 
Sbjct: 115 AAEAAIN 121


>gi|303320123|ref|XP_003070061.1| 54S ribosomal protein L3, mitochondrial precursor, putative
           [Coccidioides posadasii C735 delta SOWgp]
 gi|240109747|gb|EER27916.1| 54S ribosomal protein L3, mitochondrial precursor, putative
           [Coccidioides posadasii C735 delta SOWgp]
 gi|320031896|gb|EFW13853.1| 60S ribosomal protein L3 [Coccidioides posadasii str. Silveira]
          Length = 372

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/251 (17%), Positives = 78/251 (31%), Gaps = 56/251 (22%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           L + L  SS   S Q + +    LG ++L    S  + + +     G +     + V  +
Sbjct: 90  LARTLVDSSADPSLQFNNKSFAVLGSKLLSYYTSEHIISTYPRLPMGVIWAAVWAYVGHK 149

Query: 83  TCSQVARELDLA--------------SFIRVSS-------------------------DL 103
             S +++E  +                F R+                             
Sbjct: 150 ALSAISQEWGIEHAAAPGCEVDPGLLQFKRLPPQTDMVENGHTLHRGVSARIVYDNEFGE 209

Query: 104 RKD----VCSFMTSIQADV--VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--- 154
           R          + + QA+   V++L+ A+YL  G  VA  F  +++  R L         
Sbjct: 210 RPSQPSPGVEGVPTTQANATFVQALMGAIYLHCGRPVAKQFFKEHFMSRQLPVADLFSFA 269

Query: 155 ---RDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRA 210
              RD    L +    +    P  ++   +G     P F V +        +G   S   
Sbjct: 270 QPTRD----LTKLCAREGFERPVARIISETGRLSRHPVFVVGIFSGADLLGEGSGPSLTE 325

Query: 211 AEQVAAAEVLK 221
           A   AA   LK
Sbjct: 326 ARFRAAVAALK 336


>gi|332207755|ref|XP_003252961.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
           isoform 3 [Nomascus leucogenys]
          Length = 577

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + L +   AK    PEY +    G      F + V++ G   A+G   +K+ A++ A
Sbjct: 286 NPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKV-GNHTAEGTGTNKKVAKRNA 344

Query: 216 AAEVLKREG 224
           A  +L+  G
Sbjct: 345 AENMLEILG 353



 Score = 58.9 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G    +G   SK+ +++ AA  VL+ 
Sbjct: 191 EIALKRNLP-VNFEVARESGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEE 248

Query: 223 E 223
            
Sbjct: 249 L 249


>gi|332207753|ref|XP_003252960.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
           isoform 2 [Nomascus leucogenys]
 gi|332207761|ref|XP_003252964.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
           isoform 6 [Nomascus leucogenys]
          Length = 502

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + L +   AK    PEY +    G      F + V++ G   A+G   +K+ A++ A
Sbjct: 211 NPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKV-GNHTAEGTGTNKKVAKRNA 269

Query: 216 AAEVLKREG 224
           A  +L+  G
Sbjct: 270 AENMLEILG 278


>gi|332207751|ref|XP_003252959.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
           isoform 1 [Nomascus leucogenys]
 gi|332207757|ref|XP_003252962.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
           isoform 4 [Nomascus leucogenys]
 gi|332207759|ref|XP_003252963.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
           isoform 5 [Nomascus leucogenys]
          Length = 496

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + L +   AK    PEY +    G      F + V++ G   A+G   +K+ A++ A
Sbjct: 205 NPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKV-GNHTAEGTGTNKKVAKRNA 263

Query: 216 AAEVLKREG 224
           A  +L+  G
Sbjct: 264 AENMLEILG 272



 Score = 58.9 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G    +G   SK+ +++ AA  VL+ 
Sbjct: 110 EIALKRNLP-VNFEVARESGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEE 167

Query: 223 E 223
            
Sbjct: 168 L 168


>gi|193787146|dbj|BAG52352.1| unnamed protein product [Homo sapiens]
          Length = 365

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + L +   AK    PEY +    G      F + V++ G   A+G   +K+ A++ A
Sbjct: 74  NPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKV-GNHTAEGTGTNKKVAKRNA 132

Query: 216 AAEVLKREG 224
           A  +L+  G
Sbjct: 133 AENMLEILG 141



 Score = 42.4 bits (99), Expect = 0.046,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F   V + G    +G   SK+ +++ AA  VL+  
Sbjct: 2   KNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEEL 37


>gi|158256406|dbj|BAF84176.1| unnamed protein product [Homo sapiens]
          Length = 577

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + L +   AK    PEY +    G      F + V++ G   A+G   +K+ A++ A
Sbjct: 286 NPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKV-GNHTAEGTGTNKKVAKRNA 344

Query: 216 AAEVLKREG 224
           A  +L+  G
Sbjct: 345 AENMLEILG 353



 Score = 58.9 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G    +G   SK+ +++ AA  VL+ 
Sbjct: 191 EIALKRNLP-VNFEVARESGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEE 248

Query: 223 E 223
            
Sbjct: 249 L 249


>gi|114682577|ref|XP_001166582.1| PREDICTED: staufen isoform 1 [Pan troglodytes]
          Length = 497

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + L +   AK    PEY +    G      F + V++ G   A+G   +K+ A++ A
Sbjct: 205 NPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKV-GNHTAEGTGTNKKVAKRNA 263

Query: 216 AAEVLKREG 224
           A  +L+  G
Sbjct: 264 AENMLEILG 272



 Score = 58.9 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G    +G   SK+ +++ AA  VL+ 
Sbjct: 110 EIALKRNLP-VNFEVARESGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEE 167

Query: 223 E 223
            
Sbjct: 168 L 168


>gi|114682565|ref|XP_514710.2| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
           isoform 8 [Pan troglodytes]
          Length = 577

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + L +   AK    PEY +    G      F + V++ G   A+G   +K+ A++ A
Sbjct: 286 NPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKV-GNHTAEGTGTNKKVAKRNA 344

Query: 216 AAEVLKREG 224
           A  +L+  G
Sbjct: 345 AENMLEILG 353



 Score = 58.9 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G    +G   SK+ +++ AA  VL+ 
Sbjct: 191 EIALKRNLP-VNFEVARESGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEE 248

Query: 223 E 223
            
Sbjct: 249 L 249


>gi|114682567|ref|XP_001166711.1| PREDICTED: staufen isoform 4 [Pan troglodytes]
 gi|114682569|ref|XP_001166741.1| PREDICTED: staufen isoform 5 [Pan troglodytes]
 gi|114682571|ref|XP_001166806.1| PREDICTED: staufen isoform 6 [Pan troglodytes]
 gi|114682573|ref|XP_001166840.1| PREDICTED: staufen isoform 7 [Pan troglodytes]
          Length = 496

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + L +   AK    PEY +    G      F + V++ G   A+G   +K+ A++ A
Sbjct: 205 NPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKV-GNHTAEGTGTNKKVAKRNA 263

Query: 216 AAEVLKREG 224
           A  +L+  G
Sbjct: 264 AENMLEILG 272



 Score = 58.9 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G    +G   SK+ +++ AA  VL+ 
Sbjct: 110 EIALKRNLP-VNFEVARESGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEE 167

Query: 223 E 223
            
Sbjct: 168 L 168


>gi|114682579|ref|XP_001166642.1| PREDICTED: staufen isoform 2 [Pan troglodytes]
          Length = 492

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + L +   AK    PEY +    G      F + V++ G   A+G   +K+ A++ A
Sbjct: 205 NPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKV-GNHTAEGTGTNKKVAKRNA 263

Query: 216 AAEVLKREG 224
           A  +L+  G
Sbjct: 264 AENMLEILG 272



 Score = 58.9 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G    +G   SK+ +++ AA  VL+ 
Sbjct: 110 EIALKRNLP-VNFEVARESGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEE 167

Query: 223 E 223
            
Sbjct: 168 L 168


>gi|62088702|dbj|BAD92798.1| staufen isoform b variant [Homo sapiens]
          Length = 591

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + L +   AK    PEY +    G      F + V++ G   A+G   +K+ A++ A
Sbjct: 300 NPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKV-GNHTAEGTGTNKKVAKRNA 358

Query: 216 AAEVLKREG 224
           A  +L+  G
Sbjct: 359 AENMLEILG 367



 Score = 58.9 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G    +G   SK+ +++ AA  VL+ 
Sbjct: 205 EIALKRNLP-VNFEVARESGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEE 262

Query: 223 E 223
            
Sbjct: 263 L 263


>gi|4335947|gb|AAD17530.1| staufen protein [Homo sapiens]
 gi|4335951|gb|AAD17532.1| staufen protein [Homo sapiens]
 gi|4335953|gb|AAD17533.1| staufen protein [Homo sapiens]
          Length = 496

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + L +   AK    PEY +    G      F + V++ G   A+G   +K+ A++ A
Sbjct: 205 NPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKV-GNHTAEGTGTNKKVAKRNA 263

Query: 216 AAEVLKREG 224
           A  +L+  G
Sbjct: 264 AENMLEILG 272



 Score = 58.9 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G    +G   SK+ +++ AA  VL+ 
Sbjct: 110 EIALKRNLP-VNFEVARESGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEE 167

Query: 223 E 223
            
Sbjct: 168 L 168


>gi|4335949|gb|AAD17531.1| staufen protein [Homo sapiens]
          Length = 577

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + L +   AK    PEY +    G      F + V++ G   A+G   +K+ A++ A
Sbjct: 286 NPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKV-GNHTAEGTGTNKKVAKRNA 344

Query: 216 AAEVLKREG 224
           A  +L+  G
Sbjct: 345 AENMLEILG 353



 Score = 58.9 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G    +G   SK+ +++ AA  VL+ 
Sbjct: 191 EIALKRNLP-VNFEVARESGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEE 248

Query: 223 E 223
            
Sbjct: 249 L 249


>gi|209364604|ref|NP_001126609.1| double-stranded RNA-binding protein Staufen homolog 1 [Pongo
           abelii]
 gi|55732106|emb|CAH92759.1| hypothetical protein [Pongo abelii]
          Length = 495

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + L +   AK    PEY +    G      F + V++ G   A+G   +K+ A++ A
Sbjct: 204 NPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKV-GNHTAEGTGTNKKVAKRNA 262

Query: 216 AAEVLKREG 224
           A  +L+  G
Sbjct: 263 AENMLEILG 271



 Score = 58.9 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G    +G   SK+ +++ AA  VL+ 
Sbjct: 109 EIALKRNLP-VNFEVARESGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEE 166

Query: 223 E 223
            
Sbjct: 167 L 167


>gi|82659083|ref|NP_004593.2| double-stranded RNA-binding protein Staufen homolog 1 isoform a
           [Homo sapiens]
 gi|82659085|ref|NP_059346.2| double-stranded RNA-binding protein Staufen homolog 1 isoform a
           [Homo sapiens]
 gi|82659089|ref|NP_059348.2| double-stranded RNA-binding protein Staufen homolog 1 isoform a
           [Homo sapiens]
 gi|10944134|emb|CAC14084.1| staufen, RNA binding protein, homolog 1 (Drosophila) [Homo sapiens]
 gi|13276703|emb|CAB66536.1| hypothetical protein [Homo sapiens]
 gi|63102431|gb|AAH95397.1| Staufen, RNA binding protein, homolog 1 (Drosophila) [Homo sapiens]
 gi|119596075|gb|EAW75669.1| staufen, RNA binding protein, homolog 1 (Drosophila), isoform CRA_a
           [Homo sapiens]
 gi|119596078|gb|EAW75672.1| staufen, RNA binding protein, homolog 1 (Drosophila), isoform CRA_a
           [Homo sapiens]
 gi|119596080|gb|EAW75674.1| staufen, RNA binding protein, homolog 1 (Drosophila), isoform CRA_a
           [Homo sapiens]
 gi|158259179|dbj|BAF85548.1| unnamed protein product [Homo sapiens]
          Length = 496

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + L +   AK    PEY +    G      F + V++ G   A+G   +K+ A++ A
Sbjct: 205 NPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKV-GNHTAEGTGTNKKVAKRNA 263

Query: 216 AAEVLKREG 224
           A  +L+  G
Sbjct: 264 AENMLEILG 272



 Score = 58.9 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G    +G   SK+ +++ AA  VL+ 
Sbjct: 110 EIALKRNLP-VNFEVARESGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEE 167

Query: 223 E 223
            
Sbjct: 168 L 168


>gi|82659087|ref|NP_059347.2| double-stranded RNA-binding protein Staufen homolog 1 isoform b
           [Homo sapiens]
 gi|90185286|sp|O95793|STAU1_HUMAN RecName: Full=Double-stranded RNA-binding protein Staufen homolog 1
 gi|10944135|emb|CAC14085.1| staufen, RNA binding protein, homolog 1 (Drosophila) [Homo sapiens]
 gi|29792190|gb|AAH50432.1| Staufen, RNA binding protein, homolog 1 (Drosophila) [Homo sapiens]
 gi|119596077|gb|EAW75671.1| staufen, RNA binding protein, homolog 1 (Drosophila), isoform CRA_c
           [Homo sapiens]
 gi|119596079|gb|EAW75673.1| staufen, RNA binding protein, homolog 1 (Drosophila), isoform CRA_c
           [Homo sapiens]
 gi|168277710|dbj|BAG10833.1| double-stranded RNA-binding protein Staufen homolog 1 [synthetic
           construct]
 gi|190690419|gb|ACE86984.1| staufen, RNA binding protein, homolog 1 (Drosophila) protein
           [synthetic construct]
 gi|190691797|gb|ACE87673.1| staufen, RNA binding protein, homolog 1 (Drosophila) protein
           [synthetic construct]
          Length = 577

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + L +   AK    PEY +    G      F + V++ G   A+G   +K+ A++ A
Sbjct: 286 NPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKV-GNHTAEGTGTNKKVAKRNA 344

Query: 216 AAEVLKREG 224
           A  +L+  G
Sbjct: 345 AENMLEILG 353



 Score = 58.9 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G    +G   SK+ +++ AA  VL+ 
Sbjct: 191 EIALKRNLP-VNFEVARESGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEE 248

Query: 223 E 223
            
Sbjct: 249 L 249


>gi|114581966|ref|XP_001156031.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes]
          Length = 270

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
           K  K + +    LQE A       PEY ++   GP H   +T +  +       G   SK
Sbjct: 76  KQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESF-METGKGASK 134

Query: 209 RAAEQVAAAEVLKR 222
           + A++ AA + L +
Sbjct: 135 KQAKRNAAEKFLAK 148



 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 1/54 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           K    P Y+        H P FT  V +  +    G   SK+ A+  AA   + 
Sbjct: 2   KTKNIPVYECERSDVQIHVPTFTFRVTVGDIT-CTGEGTSKKLAKHRAAEAAIN 54


>gi|291391824|ref|XP_002712359.1| PREDICTED: protein kinase, interferon-inducible double stranded RNA
           dependent activator [Oryctolagus cuniculus]
          Length = 314

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
           K  K + +    LQE A       PEY ++   GP H   +T +  +       G   SK
Sbjct: 120 KQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESF-METGKGASK 178

Query: 209 RAAEQVAAAEVLKR 222
           + A++ AA + L +
Sbjct: 179 KQAKRNAAEKFLAK 192



 Score = 42.4 bits (99), Expect = 0.047,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 5/67 (7%)

Query: 158 KTELQ---EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           KT +Q   E+      + P Y+          P FT  V +  +    G   SK+ A+  
Sbjct: 34  KTPIQVLHEYGMKTKNI-PVYECERSDVQIRVPTFTFRVTVGDIT-CTGEGTSKKLAKHR 91

Query: 215 AAAEVLK 221
           AA   + 
Sbjct: 92  AAEAAIN 98


>gi|297668947|ref|XP_002812678.1| PREDICTED: LOW QUALITY PROTEIN: interferon-inducible double
           stranded RNA-dependent protein kinase activator A-like
           [Pongo abelii]
          Length = 313

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
           K  K + +    LQE A       PEY ++   GP H   +T +  +       G   SK
Sbjct: 119 KQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESF-METGKGASK 177

Query: 209 RAAEQVAAAEVLKR 222
           + A++ AA + L +
Sbjct: 178 KQAKRNAAEKFLAK 191



 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 158 KTELQ---EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           KT +Q   E+      + P Y+        H P FT  V +  +    G   SK+ A+  
Sbjct: 33  KTPIQVLHEYGMKTKNI-PVYECERSDVQIHVPTFTFRVTVGDIT-CTGEGTSKKLAKHR 90

Query: 215 AAAEVLK 221
           AA   + 
Sbjct: 91  AAEAAIN 97


>gi|297746261|emb|CBI16317.3| unnamed protein product [Vitis vinifera]
          Length = 280

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 6/71 (8%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215
            K  LQE A       P+Y  TFRSG  H P FT  VE++G+    G    +K+ AE+ A
Sbjct: 88  YKNLLQEIAQRVGAPLPQY-TTFRSGLGHLPVFTGTVELAGIT-FTGEPAKNKKQAEKNA 145

Query: 216 AAEV---LKRE 223
           A      LK+ 
Sbjct: 146 AMAAWSSLKQL 156



 Score = 61.6 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 26/69 (37%), Gaps = 8/69 (11%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK----RAAE 212
            K +LQE A       P Y    R GPDH PRF   V  +G         +     R AE
Sbjct: 2   YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFES---PNYCTTLRQAE 57

Query: 213 QVAAAEVLK 221
             AA   L 
Sbjct: 58  HSAAEVALN 66


>gi|225435325|ref|XP_002285171.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 413

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 6/71 (8%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215
            K  LQE A       P+Y  TFRSG  H P FT  VE++G+    G    +K+ AE+ A
Sbjct: 88  YKNLLQEIAQRVGAPLPQY-TTFRSGLGHLPVFTGTVELAGIT-FTGEPAKNKKQAEKNA 145

Query: 216 AAEV---LKRE 223
           A      LK+ 
Sbjct: 146 AMAAWSSLKQL 156



 Score = 61.6 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 26/69 (37%), Gaps = 8/69 (11%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK----RAAE 212
            K +LQE A       P Y    R GPDH PRF   V  +G         +     R AE
Sbjct: 2   YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFES---PNYCTTLRQAE 57

Query: 213 QVAAAEVLK 221
             AA   L 
Sbjct: 58  HSAAEVALN 66


>gi|147853140|emb|CAN80689.1| hypothetical protein VITISV_005501 [Vitis vinifera]
          Length = 403

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 6/71 (8%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215
            K  LQE A       P+Y  TFRSG  H P FT  VE++G+    G    +K+ AE+ A
Sbjct: 88  YKNLLQEIAQRVGAPLPQY-TTFRSGLGHLPVFTGTVELAGIT-FTGEPAKNKKQAEKNA 145

Query: 216 AAEV---LKRE 223
           A      LK+ 
Sbjct: 146 AMAAWSSLKQL 156



 Score = 61.6 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 26/69 (37%), Gaps = 8/69 (11%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK----RAAE 212
            K +LQE A       P Y    R GPDH PRF   V  +G         +     R AE
Sbjct: 2   YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFES---PNYCTTLRQAE 57

Query: 213 QVAAAEVLK 221
             AA   L 
Sbjct: 58  HSAAEVALN 66


>gi|301766900|ref|XP_002918870.1| PREDICTED: interferon-inducible double stranded RNA-dependent
           protein kinase activator A-like [Ailuropoda melanoleuca]
          Length = 313

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
           K  K + +    LQE A       PEY ++   GP H   +T +  +       G   SK
Sbjct: 119 KQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESF-METGKGASK 177

Query: 209 RAAEQVAAAEVLKR 222
           + A++ AA + L +
Sbjct: 178 KQAKRNAAEKFLAK 191



 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 158 KTELQ---EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           KT +Q   E+      + P Y+        H P FT  V +  +    G   SK+ A+  
Sbjct: 33  KTPIQVLHEYGMKTKNI-PVYECERSDVQIHVPTFTFRVTVGDIT-CTGEGTSKKLAKHR 90

Query: 215 AAAEVLK 221
           AA   + 
Sbjct: 91  AAEAAIN 97


>gi|194222350|ref|XP_001497407.2| PREDICTED: similar to protein kinase, interferon-inducible double
           stranded RNA dependent activator [Equus caballus]
          Length = 364

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
           K  K + +    LQE A       PEY ++   GP H   +T +  +       G   SK
Sbjct: 170 KQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESF-METGKGASK 228

Query: 209 RAAEQVAAAEVLKR 222
           + A++ AA + L +
Sbjct: 229 KQAKRNAAEKFLAK 242



 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 158 KTELQ---EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           KT +Q   E+      + P Y+        H P FT  V +  +    G   SK+ A+  
Sbjct: 84  KTPIQVLHEYGMKTKNI-PVYECERSDVQIHVPTFTFRVTVGDIT-CTGEGTSKKLAKHR 141

Query: 215 AAAEVLK 221
           AA   + 
Sbjct: 142 AAEAAIN 148


>gi|4505581|ref|NP_003681.1| interferon-inducible double stranded RNA-dependent protein kinase
           activator A isoform 1 [Homo sapiens]
 gi|109100224|ref|XP_001098685.1| PREDICTED: interferon-inducible double stranded RNA-dependent
           protein kinase activator A isoform 2 [Macaca mulatta]
 gi|114581964|ref|XP_515940.2| PREDICTED: interferon-inducible double stranded RNA-dependent
           protein kinase activator A isoform 2 [Pan troglodytes]
 gi|332209454|ref|XP_003253827.1| PREDICTED: interferon-inducible double stranded RNA-dependent
           protein kinase activator A isoform 1 [Nomascus
           leucogenys]
 gi|74735517|sp|O75569|PRKRA_HUMAN RecName: Full=Interferon-inducible double stranded RNA-dependent
           protein kinase activator A; AltName: Full=PKR-associated
           protein X; AltName: Full=PKR-associating protein X;
           AltName: Full=Protein activator of the
           interferon-induced protein kinase; AltName: Full=Protein
           kinase, interferon-inducible double stranded
           RNA-dependent activator
 gi|4927416|gb|AAD33099.1|AF083033_1 PKR-associating protein RAX [Homo sapiens]
 gi|3290198|gb|AAC25672.1| protein activator of the interferon-induced protein kinase [Homo
           sapiens]
 gi|12052756|emb|CAB66550.1| hypothetical protein [Homo sapiens]
 gi|14495717|gb|AAH09470.1| Protein kinase, interferon-inducible double stranded RNA dependent
           activator [Homo sapiens]
 gi|30583325|gb|AAP35907.1| protein kinase, interferon-inducible double stranded RNA dependent
           activator [Homo sapiens]
 gi|49065476|emb|CAG38556.1| PRKRA [Homo sapiens]
 gi|61362125|gb|AAX42165.1| protein kinase interferon-inducible double stranded RNA dependent
           activator [synthetic construct]
 gi|61362132|gb|AAX42166.1| protein kinase interferon-inducible double stranded RNA dependent
           activator [synthetic construct]
 gi|62630137|gb|AAX88882.1| unknown [Homo sapiens]
 gi|119631441|gb|EAX11036.1| protein kinase, interferon-inducible double stranded RNA dependent
           activator, isoform CRA_c [Homo sapiens]
 gi|158254634|dbj|BAF83290.1| unnamed protein product [Homo sapiens]
 gi|190689557|gb|ACE86553.1| protein kinase, interferon-inducible double stranded RNA dependent
           activator protein [synthetic construct]
 gi|307685745|dbj|BAJ20803.1| protein kinase, interferon-inducible double stranded RNA dependent
           activator [synthetic construct]
          Length = 313

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
           K  K + +    LQE A       PEY ++   GP H   +T +  +       G   SK
Sbjct: 119 KQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESF-METGKGASK 177

Query: 209 RAAEQVAAAEVLKR 222
           + A++ AA + L +
Sbjct: 178 KQAKRNAAEKFLAK 191



 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 158 KTELQ---EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           KT +Q   E+      + P Y+        H P FT  V +  +    G   SK+ A+  
Sbjct: 33  KTPIQVLHEYGMKTKNI-PVYECERSDVQIHVPTFTFRVTVGDIT-CTGEGTSKKLAKHR 90

Query: 215 AAAEVLK 221
           AA   + 
Sbjct: 91  AAEAAIN 97


>gi|225451531|ref|XP_002275052.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296082307|emb|CBI21312.3| unnamed protein product [Vitis vinifera]
          Length = 481

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 33/69 (47%), Gaps = 4/69 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  LQE AH      P Y    RSGP H P FT  VE++G+        +K+ AE+ AA
Sbjct: 88  YKNLLQETAHRAGLNLPVYTTV-RSGPGHVPVFTCTVELAGMNFTGESAKTKKQAEKNAA 146

Query: 217 AE---VLKR 222
                 LKR
Sbjct: 147 IAAWSALKR 155



 Score = 62.0 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 26/69 (37%), Gaps = 8/69 (11%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK----RAAE 212
            K +LQE A       P Y    R GPDH PRF   V  +G         S     R AE
Sbjct: 2   FKNQLQELAQRSCFNLPSYACI-REGPDHAPRFKASVNFNGEIFES---PSYCTTLRQAE 57

Query: 213 QVAAAEVLK 221
             AA   L 
Sbjct: 58  HAAAEVALN 66


>gi|147820257|emb|CAN71476.1| hypothetical protein VITISV_038619 [Vitis vinifera]
          Length = 552

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 33/69 (47%), Gaps = 4/69 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  LQE AH      P Y    RSGP H P FT  VE++G+        +K+ AE+ AA
Sbjct: 159 YKNLLQETAHRAGLNLPVYTTV-RSGPGHVPVFTCTVELAGMNFTGESAKTKKQAEKNAA 217

Query: 217 AE---VLKR 222
                 LKR
Sbjct: 218 IAAWSALKR 226



 Score = 62.0 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 26/69 (37%), Gaps = 8/69 (11%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK----RAAE 212
            K +LQE A       P Y    R GPDH PRF   V  +G         S     R AE
Sbjct: 73  FKNQLQELAQRSCFNLPSYACI-REGPDHAPRFKASVNFNGEIFES---PSYCTTLRQAE 128

Query: 213 QVAAAEVLK 221
             AA   L 
Sbjct: 129 HAAAEVALN 137


>gi|289807913|ref|ZP_06538542.1| ribonuclease III [Salmonella enterica subsp. enterica serovar
          Typhi str. AG3]
          Length = 61

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 30/45 (66%), Gaps = 3/45 (6%)

Query: 1  MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEF 45
          M+ +  + L++++GY F ++ LL++ALTH S S  +    ERLEF
Sbjct: 20 MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKH---NERLEF 61


>gi|114052769|ref|NP_001039335.1| interferon-inducible double stranded RNA-dependent protein kinase
           activator A [Bos taurus]
 gi|122135712|sp|Q2HJ92|PRKRA_BOVIN RecName: Full=Interferon-inducible double stranded RNA-dependent
           protein kinase activator A; AltName: Full=Protein
           activator of the interferon-induced protein kinase;
           AltName: Full=Protein kinase, interferon-inducible
           double stranded RNA-dependent activator
 gi|87578189|gb|AAI13247.1| Protein kinase, interferon-inducible double stranded RNA dependent
           activator [Bos taurus]
 gi|296490704|gb|DAA32817.1| interferon-inducible double stranded RNA-dependent protein kinase
           activator A [Bos taurus]
          Length = 313

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
           K  K + +    LQE A       PEY ++   GP H   +T +  +       G   SK
Sbjct: 119 KQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESF-METGKGASK 177

Query: 209 RAAEQVAAAEVLKR 222
           + A++ AA + L +
Sbjct: 178 KQAKRNAAEKFLAK 191



 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 158 KTELQ---EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           KT +Q   E+      + P Y+        H P FT  V +  +    G   SK+ A+  
Sbjct: 33  KTPIQVLHEYGMKTKNI-PVYECERSDVQIHVPTFTFRVTVGDIT-CTGEGTSKKLAKHR 90

Query: 215 AAAEVLK 221
           AA   + 
Sbjct: 91  AAEAAIN 97


>gi|30584929|gb|AAP36730.1| Homo sapiens protein kinase, interferon-inducible double stranded
           RNA dependent activator [synthetic construct]
 gi|33303847|gb|AAQ02437.1| protein kinase, interferon-inducible double stranded RNA dependent
           activator [synthetic construct]
 gi|60653869|gb|AAX29627.1| protein kinase interferon-inducible double stranded RNA dependent
           activator [synthetic construct]
          Length = 314

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
           K  K + +    LQE A       PEY ++   GP H   +T +  +       G   SK
Sbjct: 119 KQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESF-METGKGASK 177

Query: 209 RAAEQVAAAEVLKR 222
           + A++ AA + L +
Sbjct: 178 KQAKRNAAEKFLAK 191



 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 158 KTELQ---EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           KT +Q   E+      + P Y+        H P FT  V +  +    G   SK+ A+  
Sbjct: 33  KTPIQVLHEYGMKTKNI-PVYECERSDVQIHVPTFTFRVTVGDIT-CTGEGTSKKLAKHR 90

Query: 215 AAAEVLK 221
           AA   + 
Sbjct: 91  AAEAAIN 97


>gi|62897775|dbj|BAD96827.1| protein kinase, interferon-inducible double stranded RNA dependent
           activator variant [Homo sapiens]
          Length = 313

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
           K  K + +    LQE A       PEY ++   GP H   +T +  +       G   SK
Sbjct: 119 KQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESF-METGKGASK 177

Query: 209 RAAEQVAAAEVLKR 222
           + A++ AA + L +
Sbjct: 178 KQAKRNAAEKFLAK 191



 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 158 KTELQ---EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           KT +Q   E+      + P Y+        H P FT  V +  +    G   SK+ A+  
Sbjct: 33  KTPIQVLHEYGMKTKNI-PVYECERSDVQIHVPTFTFRVTVGDIT-CTGEGTSKKLAKHR 90

Query: 215 AAAEVLK 221
           AA   + 
Sbjct: 91  AAEAAIN 97


>gi|74004908|ref|XP_545545.2| PREDICTED: similar to protein kinase, interferon-inducible double
           stranded RNA dependent activator [Canis familiaris]
 gi|194043952|ref|XP_001927740.1| PREDICTED: interferon-inducible double stranded RNA-dependent
           protein kinase activator A [Sus scrofa]
          Length = 313

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
           K  K + +    LQE A       PEY ++   GP H   +T +  +       G   SK
Sbjct: 119 KQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESF-METGKGASK 177

Query: 209 RAAEQVAAAEVLKR 222
           + A++ AA + L +
Sbjct: 178 KQAKRNAAEKFLAK 191



 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 158 KTELQ---EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           KT +Q   E+      + P Y+        H P FT  V +  +    G   SK+ A+  
Sbjct: 33  KTPIQVLHEYGMKTKNI-PVYECERSDVQIHVPTFTFRVTVGDIT-CTGEGTSKKLAKHR 90

Query: 215 AAAEVLK 221
           AA   + 
Sbjct: 91  AAEAAIN 97


>gi|6755162|ref|NP_036001.1| interferon-inducible double stranded RNA-dependent protein kinase
           activator A [Mus musculus]
 gi|81882073|sp|Q9WTX2|PRKRA_MOUSE RecName: Full=Interferon-inducible double stranded RNA-dependent
           protein kinase activator A; AltName: Full=PKR-associated
           protein X; AltName: Full=PKR-associating protein X;
           Short=RAX; AltName: Full=Protein activator of the
           interferon-induced protein kinase; AltName: Full=Protein
           kinase, interferon-inducible double stranded
           RNA-dependent activator
 gi|4927414|gb|AAD33098.1|AF083032_1 PKR-associating protein RAX [Mus musculus]
 gi|15030117|gb|AAH11311.1| Protein kinase, interferon inducible double stranded RNA dependent
           activator [Mus musculus]
 gi|74196321|dbj|BAE33056.1| unnamed protein product [Mus musculus]
 gi|123233430|emb|CAM25296.1| protein kinase, interferon inducible double stranded RNA dependent
           activator [Mus musculus]
 gi|148695265|gb|EDL27212.1| protein kinase, interferon inducible double stranded RNA dependent
           activator, isoform CRA_a [Mus musculus]
          Length = 313

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
           K  K + +    LQE A       PEY ++   GP H   +T +  +       G   SK
Sbjct: 119 KQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESF-METGKGASK 177

Query: 209 RAAEQVAAAEVLKR 222
           + A++ AA + L +
Sbjct: 178 KQAKRNAAEKFLAK 191



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 158 KTELQ---EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           KT +Q   E+      + P Y+        H P FT  V +  +    G   SK+ A+  
Sbjct: 33  KTPIQVLHEYGMKTKNI-PVYECERSDVQVHVPTFTFRVTVGDIT-CTGEGTSKKLAKHR 90

Query: 215 AAAEVLK 221
           AA   + 
Sbjct: 91  AAEAAIN 97


>gi|67078460|ref|NP_001019951.1| interferon-inducible double stranded RNA-dependent protein kinase
           activator A [Rattus norvegicus]
 gi|81908679|sp|Q4V8C7|PRKRA_RAT RecName: Full=Interferon-inducible double stranded RNA-dependent
           protein kinase activator A; AltName: Full=Protein
           activator of the interferon-induced protein kinase;
           AltName: Full=Protein kinase, interferon-inducible
           double stranded RNA-dependent activator
 gi|66910624|gb|AAH97446.1| Protein kinase, interferon inducible double stranded RNA dependent
           activator [Rattus norvegicus]
          Length = 313

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
           K  K + +    LQE A       PEY ++   GP H   +T +  +       G   SK
Sbjct: 119 KQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESF-METGKGASK 177

Query: 209 RAAEQVAAAEVLKR 222
           + A++ AA + L +
Sbjct: 178 KQAKRNAAEKFLAK 191



 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 158 KTELQ---EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           KT +Q   E+   K    P Y+        H P FT  V +  +    G   SK+ A+  
Sbjct: 33  KTPIQVLHEYG-TKTKNIPVYECERSDVQVHVPTFTFRVTVGDIT-CTGEGTSKKLAKHR 90

Query: 215 AAAEVLK 221
           AA   + 
Sbjct: 91  AAEAAIN 97


>gi|297822435|ref|XP_002879100.1| dsRNA-binding protein 2 [Arabidopsis lyrata subsp. lyrata]
 gi|297324939|gb|EFH55359.1| dsRNA-binding protein 2 [Arabidopsis lyrata subsp. lyrata]
          Length = 436

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 6/71 (8%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215
            K  LQE A       P Y  TFRSG  H P FT  VE++G+    G    +K+ AE+ A
Sbjct: 88  YKNLLQEIAQRVGAPLPRY-TTFRSGLGHQPVFTGTVELAGIT-FTGDPAKNKKQAEKNA 145

Query: 216 AAEV---LKRE 223
           A      LK+ 
Sbjct: 146 AMAAWSSLKQL 156



 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK-RAAEQVA 215
            K +LQE A       P Y    R GPDH PRF   V  +G        CS  R AE  A
Sbjct: 2   YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60

Query: 216 AAEVLKRE 223
           A   L   
Sbjct: 61  AEVALNAL 68


>gi|149022336|gb|EDL79230.1| protein kinase, interferon inducible double stranded RNA dependent
           activator, isoform CRA_b [Rattus norvegicus]
          Length = 313

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
           K  K + +    LQE A       PEY ++   GP H   +T +  +       G   SK
Sbjct: 119 KQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESF-METGKGASK 177

Query: 209 RAAEQVAAAEVLKR 222
           + A++ AA + L +
Sbjct: 178 KQAKRNAAEKFLAK 191



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 158 KTELQ---EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           KT +Q   E+      + P Y+        H P FT  V +  +    G   SK+ A+  
Sbjct: 33  KTPIQVLHEYGMKTKNI-PVYECERSDVQVHVPTFTFRVTVGDIT-CTGEGTSKKLAKHR 90

Query: 215 AAAEVLK 221
           AA   + 
Sbjct: 91  AAEAAIN 97


>gi|18401724|ref|NP_565672.1| DRB2 (DSRNA-BINDING PROTEIN 2); double-stranded RNA binding
           [Arabidopsis thaliana]
 gi|75266001|sp|Q9SKN2|DRB2_ARATH RecName: Full=Double-stranded RNA-binding protein 2; AltName:
           Full=dsRNA-binding protein 2; Short=AtDRB2
 gi|4432839|gb|AAD20688.1| expressed protein [Arabidopsis thaliana]
 gi|14334606|gb|AAK59481.1| unknown protein [Arabidopsis thaliana]
 gi|17065634|gb|AAL33811.1| unknown protein [Arabidopsis thaliana]
 gi|330253020|gb|AEC08114.1| dsRNA-binding protein 2 [Arabidopsis thaliana]
          Length = 434

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 6/71 (8%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215
            K  LQE A       P Y  TFRSG  H P FT  VE++G+    G    +K+ AE+ A
Sbjct: 88  YKNLLQEIAQRVGAPLPRY-TTFRSGLGHQPVFTGTVELAGIT-FTGDPAKNKKQAEKNA 145

Query: 216 AAEV---LKRE 223
           A      LK+ 
Sbjct: 146 AMAAWSSLKQL 156



 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK-RAAEQVA 215
            K +LQE A       P Y    R GPDH PRF   V  +G        CS  R AE  A
Sbjct: 2   YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60

Query: 216 AAEVLKRE 223
           A   L   
Sbjct: 61  AEVALNAL 68


>gi|4572588|emb|CAB40082.1| staufen protein [Homo sapiens]
          Length = 496

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + L +   AK    PEY +    G      F + V++ G   A+G   +K+ A++ A
Sbjct: 205 NPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKV-GNHTAEGTGTNKKVAKRNA 263

Query: 216 AAEVLKREG 224
           A  +L+  G
Sbjct: 264 AENMLEILG 272



 Score = 58.5 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G    +G   SK+ +++ AA  VL+ 
Sbjct: 110 EIALKRNLP-VNFEVARESGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEE 167

Query: 223 E 223
            
Sbjct: 168 L 168


>gi|195156001|ref|XP_002018889.1| GL26052 [Drosophila persimilis]
 gi|194115042|gb|EDW37085.1| GL26052 [Drosophila persimilis]
          Length = 470

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP---AQGMDCSKRAAEQ 213
             + LQE   ++ G+TP Y++    G  H+P F   V          A G   SK+ A+ 
Sbjct: 145 PVSILQEIL-SRRGITPGYELVQIEGAIHEPTFRFRVSFKEKDTPFTAMGAGRSKKEAKH 203

Query: 214 VAAAEVLKRE 223
            AA  ++ + 
Sbjct: 204 AAARALIDKL 213



 Score = 64.7 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 1/73 (1%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
            K   +    LQE    +    P Y      G  H+  FT+   I       G   SK+ 
Sbjct: 251 DKIVGNPIGLLQELCMQRRWPPPTYATETEMGLPHERLFTIACTIL-QYREIGKGKSKKI 309

Query: 211 AEQVAAAEVLKRE 223
           A++ AA ++  R 
Sbjct: 310 AKRSAAHKMWSRL 322


>gi|68476619|ref|XP_717602.1| likely mitochondrial ribosomal protein MRPL3 [Candida albicans
           SC5314]
 gi|68476766|ref|XP_717528.1| likely mitochondrial ribosomal protein MRPL3 [Candida albicans
           SC5314]
 gi|46439242|gb|EAK98562.1| likely  mitochondrial ribosomal protein MRPL3 [Candida albicans
           SC5314]
 gi|46439319|gb|EAK98638.1| likely  mitochondrial ribosomal protein MRPL3 [Candida albicans
           SC5314]
          Length = 404

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 66/224 (29%), Gaps = 50/224 (22%)

Query: 46  LGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLA----------- 94
           LG  +L   ++  L  H+            +SL+     S++ +   +            
Sbjct: 144 LGKSLLSYYVTEHLLIHYPRLPMKIHQAAVDSLMGNLALSEIGKTWGIEIDEVSKLDRFL 203

Query: 95  ----SFIRVS------------SDLRKDVCSFMTS-----------------IQADVVES 121
                F++                   +      S                   A  V++
Sbjct: 204 GQESEFMKFGRLRYLYDQDKSDKFYNNNGNYKNVSGIEEVIDEQGKLSQQDLAYASAVKA 263

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHA-KFGVTPEYKVT 178
           +I  LY   G   A  F++ +   R +   +    +   +EL       +F      ++ 
Sbjct: 264 IIGGLYTHCGESAAKDFINDHILSRKIPLDQMFEFKRPISELIRLCDKLEFKQPVSIRLI 323

Query: 179 FRSGP--DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             +G    H P+F   V +      +G+  S + A+  A+   L
Sbjct: 324 AETGRLSAH-PQFLAGVFVGNDKIGEGIGSSLKEAQIRASINSL 366


>gi|328848596|gb|EGF97802.1| hypothetical protein MELLADRAFT_27059 [Melampsora larici-populina
           98AG31]
          Length = 220

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 66/211 (31%), Gaps = 27/211 (12%)

Query: 39  SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
             E L  LG+ +LG+L +  +   +               V   TC+ V+R   + S   
Sbjct: 2   HNEELATLGNSLLGVLGAEWIDRRYPHLPNKAFQAALTMYVGPRTCADVSRIWGVCSAAG 61

Query: 99  VSSDLRKDVCS-------------------FMTSIQ-----ADVVESLIAALYLDGGIEV 134
           +S+   ++                      F   +      A V  + +  +Y   G++ 
Sbjct: 62  LSNLTIENKPRPGLLRWRRAETALGQKASGFKQGVLYEDAMASVSRAFVGLVYTLSGMKA 121

Query: 135 AGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTV 191
              FV   W  R  + G   +  +    L+          P  ++   SG       F V
Sbjct: 122 TREFVAANWLSRKAQVGDLLKFTNPFIVLKYTLAKYDREPPVARLLRESGRASATAMFVV 181

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                 +   +    S + AE  A  + L+R
Sbjct: 182 GSYSGSMKLGEAYGTSMKMAEYRAHEDALRR 212


>gi|238878780|gb|EEQ42418.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 404

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 66/224 (29%), Gaps = 50/224 (22%)

Query: 46  LGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLA----------- 94
           LG  +L   ++  L  H+            +SL+     S++ +   +            
Sbjct: 144 LGKSLLSYYVTEHLLIHYPRLPMKIHQAAVDSLMGNLALSEIGKTWGIEIDEVSKLDRFL 203

Query: 95  ----SFIRVS------------SDLRKDVCSFMTS-----------------IQADVVES 121
                F++                   +      S                   A  V++
Sbjct: 204 GQESEFMKFGRLRYLYDQDKSDKFYNNNGNYKNVSGIEEVIDEQGKLSQQDLAYASAVKA 263

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHA-KFGVTPEYKVT 178
           +I  LY   G   A  F++ +   R +   +    +   +EL       +F      ++ 
Sbjct: 264 IIGGLYTHCGESAAKDFINDHILSRKIPLDQMFEFKRPISELIRLCDKLEFKQPVSIRLI 323

Query: 179 FRSGP--DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             +G    H P+F   V +      +G+  S + A+  A+   L
Sbjct: 324 AETGRLSAH-PQFLAGVFVGNDKIGEGIGSSLKEAQIRASINSL 366


>gi|241998518|ref|XP_002433902.1| staufen, putative [Ixodes scapularis]
 gi|215495661|gb|EEC05302.1| staufen, putative [Ixodes scapularis]
          Length = 651

 Score = 67.4 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 1/69 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + L +   AK    P Y +    G      F +   + G    QG   +K+ A+++A
Sbjct: 371 NPISRLIQIQQAKKEPEPSYSLVSERGDPRQREFVLQCVL-GALTTQGAGPNKKTAKRLA 429

Query: 216 AAEVLKREG 224
           A  +L++ G
Sbjct: 430 AEAMLQKLG 438



 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
             V  +Y++   SGP H   FTVV+ ++G    Q    S +
Sbjct: 93  NKVALQYRLVEESGPPHKKNFTVVLRLAGNEY-QASGTSIK 132


>gi|218184757|gb|EEC67184.1| hypothetical protein OsI_34054 [Oryza sativa Indica Group]
          Length = 506

 Score = 67.4 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 6/71 (8%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215
            K  LQE A       P Y  T RSG  H P FT  VE++G+    G    +K+ AE+ A
Sbjct: 80  YKNLLQEVAQRVGAPLPSY-TTERSGLGHLPVFTCTVELAGIT-FTGDPAKNKKQAEKNA 137

Query: 216 AAEV---LKRE 223
           A+     L++ 
Sbjct: 138 ASAAWSSLRQL 148


>gi|114107707|gb|AAI22893.1| stau1 protein [Xenopus (Silurana) tropicalis]
          Length = 686

 Score = 67.4 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G   A+GM  +K+ A++ 
Sbjct: 370 MNPISRLAQIQQAKKDKEPEYILITERGLPRRREFVMQVKV-GNHSAEGMGTNKKVAKRN 428

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 429 AAENMLELLG 438



 Score = 58.9 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           K  ++  ++VT  +GP H   F   V + G    +G   SK+ +++ AA  VL+  
Sbjct: 280 KRNMSVNFEVTKETGPPHMKSFVTKVIV-GEFLGEGEGKSKKISKKNAAISVLEEL 334



 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 1/39 (2%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             + P YK+    GP H   FTV + +      +    S
Sbjct: 89  NKIQPIYKLLSEQGPAHSKMFTVQLTLGDQYW-EAEGTS 126


>gi|62858029|ref|NP_001016542.1| staufen, RNA binding protein, homolog 1 [Xenopus (Silurana)
           tropicalis]
          Length = 614

 Score = 67.4 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G   A+GM  +K+ A++ 
Sbjct: 298 MNPISRLAQIQQAKKDKEPEYILITERGLPRRREFVMQVKV-GNHSAEGMGTNKKVAKRN 356

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 357 AAENMLELLG 366



 Score = 58.9 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           K  ++  ++VT  +GP H   F   V + G    +G   SK+ +++ AA  VL+  
Sbjct: 208 KRNMSVNFEVTKETGPPHMKSFVTKVIV-GEFLGEGEGKSKKISKKNAAISVLEEL 262



 Score = 45.5 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 1/39 (2%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             + P YK+    GP H   FTV + +      +    S
Sbjct: 11  NKIQPVYKLLSEQGPAHSKMFTVQLTLGDQYW-EAEGTS 48


>gi|115482562|ref|NP_001064874.1| Os10g0480500 [Oryza sativa Japonica Group]
 gi|75261835|sp|Q9AV50|DRB6_ORYSJ RecName: Full=Double-stranded RNA-binding protein 6; AltName:
           Full=dsRNA-binding protein 5; Short=OsDRB5; AltName:
           Full=dsRNA-binding protein 6
 gi|13384384|gb|AAK21352.1|AC024594_16 putative extensin [Oryza sativa Japonica Group]
 gi|31432702|gb|AAP54300.1| Double-stranded RNA binding motif family protein, expressed [Oryza
           sativa Japonica Group]
 gi|113639483|dbj|BAF26788.1| Os10g0480500 [Oryza sativa Japonica Group]
 gi|125575161|gb|EAZ16445.1| hypothetical protein OsJ_31914 [Oryza sativa Japonica Group]
 gi|215694820|dbj|BAG90011.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 514

 Score = 67.4 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 6/71 (8%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215
            K  LQE A       P Y  T RSG  H P FT  VE++G+    G    +K+ AE+ A
Sbjct: 88  YKNLLQEVAQRVGAPLPSY-TTERSGLGHLPVFTCTVELAGIT-FTGDPAKNKKQAEKNA 145

Query: 216 AAEV---LKRE 223
           A+     L++ 
Sbjct: 146 ASAAWSSLRQL 156



 Score = 52.8 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
            K +LQE A       P Y    R GPDH PRF   V  +G 
Sbjct: 2   YKNQLQELAQRSCFNLPAYTCL-REGPDHAPRFKAAVNFNGE 42


>gi|89271756|emb|CAJ83112.1| novel protein similar to staufen [Xenopus (Silurana) tropicalis]
          Length = 696

 Score = 67.4 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G   A+GM  +K+ A++ 
Sbjct: 380 MNPISRLAQIQQAKKDKEPEYILITERGLPRRREFVMQVKV-GNHSAEGMGTNKKVAKRN 438

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 439 AAENMLELLG 448



 Score = 58.9 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           K  ++  ++VT  +GP H   F   V + G    +G   SK+ +++ AA  VL+  
Sbjct: 290 KRNMSVNFEVTKETGPPHMKSFVTKVIV-GEFLGEGEGKSKKISKKNAAISVLEEL 344



 Score = 45.5 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 1/39 (2%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             + P YK+    GP H   FTV + +      +    S
Sbjct: 93  NKIQPVYKLLSEQGPAHSKMFTVQLTLGDQYW-EAEGTS 130


>gi|170586588|ref|XP_001898061.1| Double-stranded RNA binding motif family protein [Brugia malayi]
 gi|158594456|gb|EDP33040.1| Double-stranded RNA binding motif family protein [Brugia malayi]
          Length = 790

 Score = 67.4 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 37/93 (39%), Gaps = 3/93 (3%)

Query: 135 AGTFVDKYWKQRALKSGK---FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
           A   + +    + +K       + +  + L +   A+    P++++    G      F +
Sbjct: 421 APKELKRRTISKDMKMNPEYGHQINPVSRLMQIMQARKQNEPKFQLVAERGQSRYKEFVM 480

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            V        +G+  +K+ A++ AA  VL R G
Sbjct: 481 EVICDDGLRCEGIGPNKKLAKRAAAEAVLARIG 513



 Score = 62.8 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 24/48 (50%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           EYK+   SGP H  +FTV + ++      G   S + A+Q AA   L 
Sbjct: 71  EYKLMDESGPAHKKQFTVSLVLTPDQVFYGKGASIKKAQQSAAETALN 118



 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVAAAEVLK 221
                 +  E+ V    GP HD  + +  ++     +  A G   SK+ A+Q A + +L 
Sbjct: 337 CALHMRMNVEFLVLKEEGPAHDRHYLLRCKLISAERVISADGEGSSKKIAKQNACSLMLT 396

Query: 222 RE 223
           + 
Sbjct: 397 KL 398


>gi|326495676|dbj|BAJ85934.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 364

 Score = 67.4 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  LQE AH      P Y    RSGP H P F   VE++GL+ A     +K+ AE+ AA
Sbjct: 88  YKNLLQETAHRAGLKLPAYTTV-RSGPGHSPVFASSVELAGLSFAGDAARTKKQAEKNAA 146

Query: 217 A---EVLKRE 223
                 LK+ 
Sbjct: 147 MTAWSALKQM 156



 Score = 65.9 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 28/71 (39%), Gaps = 8/71 (11%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD----CSKRAAE 212
            K +LQE A       P Y  T R GPDH PRF   V  +G             + R AE
Sbjct: 2   YKNQLQELAQRSCFSLPSYVCT-REGPDHAPRFKATVTFNGETF---HGPTCCTTLRQAE 57

Query: 213 QVAAAEVLKRE 223
             AA   L R 
Sbjct: 58  HAAAEVALARL 68


>gi|291409122|ref|XP_002720862.1| PREDICTED: adenosine deaminase, RNA-specific, B2-like [Oryctolagus
           cuniculus]
          Length = 734

 Score = 67.4 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y++  ++GP H P F V VE++GL   +G   +K+ A+  AA
Sbjct: 115 PKNALVQL--HELKPGLQYRMVSQTGPVHAPVFAVAVEVNGLT-FEGTGPTKKKAKMRAA 171

Query: 217 AEVLK 221
              LK
Sbjct: 172 ELALK 176



 Score = 35.8 bits (82), Expect = 5.1,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 19/67 (28%), Gaps = 7/67 (10%)

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQ 202
           + R   +    R+    L E           Y     +        F + V + G    +
Sbjct: 260 RPRPAPTAPGERNPVVVLNEL-----RSGLRYVCLSETAEKPRAKSFVMAVCVDGRT-FE 313

Query: 203 GMDCSKR 209
           G   SK+
Sbjct: 314 GSGRSKK 320


>gi|170104597|ref|XP_001883512.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164641576|gb|EDR05836.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1046

 Score = 67.4 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 3/82 (3%)

Query: 141 KYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
           + + Q  + S       D    L +         P Y+V  RSGP H   +TVVV ++ +
Sbjct: 720 RVFNQEGIDSPSPDVLSDPVRTLNDLCQHSGLYPPHYEV-ARSGPAHAEDWTVVVTVNDI 778

Query: 199 APAQGMDCSKRAAEQVAAAEVL 220
              +G   SK  A++ AA   L
Sbjct: 779 EYGRGTASSKNNAKRAAAEIAL 800


>gi|194691820|gb|ACF79994.1| unknown [Zea mays]
          Length = 266

 Score = 67.4 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVA 215
            K  LQ +A   +  TP YKV    G  H P+FT  VE+      + G    K+ AEQ A
Sbjct: 2   HKNRLQSFAERTYKKTPIYKVESE-GQSHQPKFTCTVEVGDQQFSSTGSFSRKKEAEQDA 60

Query: 216 AAEVLK 221
           A    +
Sbjct: 61  ARVAYE 66



 Score = 45.1 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAA 216
           K+ L E+A       P Y V           F  +V   G A   G    +K+ AEQ AA
Sbjct: 91  KSILIEFAVKTKTTLPSYSVVCVCLKKPLTLFAAIVVFDGNAY-HGESAPNKKDAEQNAA 149

Query: 217 AEVLK 221
             V+K
Sbjct: 150 RVVIK 154


>gi|212276238|ref|NP_001130203.1| hypothetical protein LOC100191297 [Zea mays]
 gi|194688536|gb|ACF78352.1| unknown [Zea mays]
          Length = 323

 Score = 67.4 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVA 215
            K  LQ +A   +  TP YKV    G  H P+FT  VE+      + G    K+ AEQ A
Sbjct: 59  HKNRLQSFAERTYKKTPIYKVESE-GQSHQPKFTCTVEVGDQQFSSTGSFSRKKEAEQDA 117

Query: 216 AAEVLK 221
           A    +
Sbjct: 118 ARVAYE 123



 Score = 45.1 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAA 216
           K+ L E+A       P Y V           F  +V   G A   G    +K+ AEQ AA
Sbjct: 148 KSILIEFAVKTKTTLPSYSVVCVCLKKPLTLFAAIVVFDGNAY-HGESAPNKKDAEQNAA 206

Query: 217 AEVLK 221
             V+K
Sbjct: 207 RVVIK 211


>gi|148695266|gb|EDL27213.1| protein kinase, interferon inducible double stranded RNA dependent
           activator, isoform CRA_b [Mus musculus]
          Length = 210

 Score = 67.4 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
           K  K + +    LQE A       PEY ++   GP H   +T +  +       G   SK
Sbjct: 16  KQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESF-METGKGASK 74

Query: 209 RAAEQVAAAEVLKR 222
           + A++ AA + L +
Sbjct: 75  KQAKRNAAEKFLAK 88


>gi|330917728|ref|XP_003297934.1| hypothetical protein PTT_08495 [Pyrenophora teres f. teres 0-1]
 gi|311329130|gb|EFQ93969.1| hypothetical protein PTT_08495 [Pyrenophora teres f. teres 0-1]
          Length = 409

 Score = 67.4 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 77/277 (27%), Gaps = 59/277 (21%)

Query: 3   ALRYSTLEKRIGYAFANR-SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           +++   L  R+         +L + L H S   +   +   L  LG ++LG   S  L  
Sbjct: 97  SIKLHALRSRLSLPPRFPLQVLARTLVHPSADANPAFNNASLSILGRQLLGYYTSEWLIC 156

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLA--------------SFIRVSSD----- 102
            +       +     + +  +  + VARE  +                F R+ +      
Sbjct: 157 TYPRLPMEVVFAAVEAYIGPKALATVAREWGIEAAAEPGGEVDPGLLQFKRIGAGDALPE 216

Query: 103 ------LRKDVCSFMTSIQADV----------------------------VESLIAALYL 128
                       +    I                                V +LI AL++
Sbjct: 217 ALRRQVPWNWNVTTTHKIIKSDEFGSNNAGPSPHALEKTPVPVEEAAQSFVRALIGALHV 276

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTE---LQEWAHAKFGVTPEYKVTFRSGP-D 184
             G  +   F   ++  R L       D +T    L      +    P  ++   +G   
Sbjct: 277 HLGSPLVKRFYRDHFLSRHLDISTIF-DFRTPTRDLSWLCRREGFEPPVARLISETGRLS 335

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             P F V V        +    S   A   A+A  LK
Sbjct: 336 RHPVFVVGVYSGRDKLGEASGSSLDEARIRASAAALK 372


>gi|213511414|ref|NP_001133664.1| double-stranded RNA-binding protein Staufen homolog 1 [Salmo salar]
 gi|209154860|gb|ACI33662.1| Double-stranded RNA-binding protein Staufen homolog 1 [Salmo salar]
          Length = 701

 Score = 67.4 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V + G   A+G+  SK+ A++ 
Sbjct: 380 MNPISRLAQIQQAKKEKEPEYNMLTERGLPRRREFVMQVMVCGQ-CAEGLGPSKKVAKKN 438

Query: 215 AAAEVLKREG 224
           AA ++L+  G
Sbjct: 439 AAEKMLELLG 448



 Score = 61.6 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 13/102 (12%)

Query: 133 EVAGTFVDKYWKQRALKSGKFRRDA--------KTEL-Q--EWAHAKFGVTPEYKVTFRS 181
           + A   +    K+  L       +         K+E+ Q  E A  +      ++V   +
Sbjct: 243 DAASKALKTLQKEPILLQQLPEMNGEDTEENLNKSEISQVFEIALKRNMP-VNFEVLKEA 301

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           GP H   F V V + G    +G   SK+ A+++AA  VL+  
Sbjct: 302 GPPHMKSFMVRVAV-GEFCGEGEGKSKKIAKKLAATAVLEEL 342



 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
             + PEYK+    GP H   F+V + +      +    S + A+
Sbjct: 86  NKIQPEYKLLCEQGPAHSKIFSVRLSLGDQHW-EAEGTSIKKAQ 128


>gi|322797373|gb|EFZ19485.1| hypothetical protein SINV_11443 [Solenopsis invicta]
          Length = 345

 Score = 67.4 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 1/78 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
              L S     +A  ELQE         PEY +    GP H   FT+  +IS      G 
Sbjct: 99  PPRLPSNVPFFNAVGELQELCAINNLQEPEYLLIKDIGPPHARIFTLRCKISNFEE-DGT 157

Query: 205 DCSKRAAEQVAAAEVLKR 222
             +K+ A+  AA +++ R
Sbjct: 158 ATTKKQAKHDAAKKMVDR 175



 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             + LQE    K G+ P+Y +    G  H   FT  V   GL  A G    K+ A+  AA
Sbjct: 5   PVSILQEMM-VKQGMIPDYDLIHDGGGRHVNTFTYRVSCDGLN-ATGTGRCKKDAKHEAA 62

Query: 217 AEVL 220
             +L
Sbjct: 63  KAML 66


>gi|242034167|ref|XP_002464478.1| hypothetical protein SORBIDRAFT_01g019110 [Sorghum bicolor]
 gi|241918332|gb|EER91476.1| hypothetical protein SORBIDRAFT_01g019110 [Sorghum bicolor]
          Length = 512

 Score = 67.4 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 6/71 (8%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215
            K  LQE A       P Y  T RSG  H P FT  VE++G+    G    +K+ AE+ A
Sbjct: 88  YKNLLQEVAQRVGAPLPLY-TTERSGLGHLPVFTCTVELAGIT-FTGDPAKNKKQAEKNA 145

Query: 216 AAE---VLKRE 223
           A+     LK+ 
Sbjct: 146 ASAAWSALKQL 156



 Score = 52.8 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
            K +LQE A       P Y    R GPDH PRF   V  +G 
Sbjct: 2   YKNQLQELAQRSCFNLPAYTCL-REGPDHAPRFKAAVNFNGE 42


>gi|156550835|ref|XP_001601132.1| PREDICTED: similar to RE14437p [Nasonia vitripennis]
          Length = 394

 Score = 67.4 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
             K   +    LQE   ++    P+Y +    G  H+ +FT+V  I       G   SK+
Sbjct: 178 EEKVVNNPIGSLQEMCMSRHWPPPKYSMEGEEGLPHERQFTIVCSILKYRQ-VGQGKSKK 236

Query: 210 AAEQVAAAEVLK 221
            A++ AA ++ +
Sbjct: 237 LAKRQAAHKMWQ 248



 Score = 52.0 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 5/55 (9%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG----LAPAQGMDCS 207
             + LQE   ++ G TP+Y++    G  H+P F   V ++     +  A G   S
Sbjct: 78  PVSVLQELL-SRRGTTPKYELVQIEGAIHEPTFRYRVTVADVVDPIVSAMGTGRS 131


>gi|302826423|ref|XP_002994689.1| hypothetical protein SELMODRAFT_432592 [Selaginella moellendorffii]
 gi|300137140|gb|EFJ04244.1| hypothetical protein SELMODRAFT_432592 [Selaginella moellendorffii]
          Length = 243

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 40/103 (38%), Gaps = 7/103 (6%)

Query: 112 TSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170
             +  D++ES+  A++LD G+     + V +   +  +           ELQE    +  
Sbjct: 28  PKVLGDILESIAGAIFLDTGLAADEVWKVFERLLEPMVTPDTLPVHPVRELQERCQQQAE 87

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
              EY+ +           TV V + G+      +  K+ A++
Sbjct: 88  GL-EYRASREGSIA-----TVEVFVDGVQIGCAQNTQKKMAQK 124



 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 6/72 (8%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-----QGMD-CSKRAAEQV 214
           L +    +    P+Y++   SGP H  RFT  V ++          +G    S + A+  
Sbjct: 163 LNDICLQRQWPMPQYRLLSESGPAHAKRFTYTVRVNTRERGWTDECEGQAMPSMKKAKDS 222

Query: 215 AAAEVLKREGIW 226
           AA  +L+    W
Sbjct: 223 AALVLLEVLKQW 234


>gi|224069354|ref|XP_002302963.1| predicted protein [Populus trichocarpa]
 gi|222844689|gb|EEE82236.1| predicted protein [Populus trichocarpa]
          Length = 452

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 12/71 (16%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS------KRA 210
            K  LQE+        P Y+     GP H PRF   V + G         S      ++A
Sbjct: 140 YKNRLQEYTQKSSLQLPVYQTLNE-GPAHMPRFRSTVWVDGARY-----RSQKTFLHRKA 193

Query: 211 AEQVAAAEVLK 221
           AEQ  A   L+
Sbjct: 194 AEQDVANLALE 204



 Score = 51.6 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           K+ L E+A       P Y      G    P F   +   G++       +K+ AEQ+AA 
Sbjct: 226 KSILNEFAVKVNREKPTYNTVQSPGL--LPVFISTLVFDGVSYTGDAGRNKKEAEQLAAR 283

Query: 218 EVL 220
            V+
Sbjct: 284 AVI 286


>gi|36963075|gb|AAQ87664.1| staufen [Mus musculus]
          Length = 436

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 77/200 (38%), Gaps = 23/200 (11%)

Query: 41  ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET--CSQVARELDLASF-- 96
           ERLE     + G        N  + ++  E++++ N  V+ E+   +QVARE        
Sbjct: 79  ERLE-----VNGREAEEENLNKSEISQVFEIALKRNLPVNFESFLLTQVARESGPPHMKN 133

Query: 97  --IRVSSDLRKDVCSFMTSIQA--DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
              RV            +   +  +   +++  L     +      V    K+++  + K
Sbjct: 134 VVTRVPVGEFVGEGEGKSKKISKKNAARAVLEQLRRLPPLPAVER-VKPRIKKKSQPTCK 192

Query: 153 FR--------RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
            +         +  + L +   AK    PEY +    G      F + V++ G   A+G+
Sbjct: 193 LQTAPDYGQGMNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGV 251

Query: 205 DCSKRAAEQVAAAEVLKREG 224
             +K+ A++ AA  +L+  G
Sbjct: 252 GTNKKVAKRNAAENMLEILG 271


>gi|222619325|gb|EEE55457.1| hypothetical protein OsJ_03618 [Oryza sativa Japonica Group]
          Length = 351

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 10/69 (14%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-----APAQGMDCSKRAA 211
            K++LQ +A  K  + P Y+   R GP H  RF  VV + G              + + A
Sbjct: 87  YKSQLQIYAQKKGKLLPSYQTI-REGPGHASRFKSVVTVDGKAFESPEYF----HTVKEA 141

Query: 212 EQVAAAEVL 220
           E  AA   L
Sbjct: 142 ESAAAKLAL 150



 Score = 65.1 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM--DCSKRAAEQV 214
            K+ LQE    +    PEY     +GP H P F   V ++G+          S + A  +
Sbjct: 2   YKSRLQELCQQRRWAPPEY-THRCAGPAHAPLFGATVSVNGVEFRTPEDAARSAKEAHNI 60

Query: 215 AAAEVL 220
           AA   L
Sbjct: 61  AAKAAL 66



 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 22/66 (33%), Gaps = 3/66 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215
            K  LQE A       P Y  T   G    P F   V        QG    +K+ AE  A
Sbjct: 170 YKNLLQELAQKHGFSLPVYSTTS-DGSVQVPMFKSTVVFQD-GSFQGEPANTKKQAEMNA 227

Query: 216 AAEVLK 221
           A    +
Sbjct: 228 ARVAFQ 233


>gi|322511164|gb|ADX06477.1| putative ribonuclease III [Organic Lake phycodnavirus 2]
          Length = 92

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 37/65 (56%)

Query: 37  QESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96
           Q S ERLEF+GD IL ++    L+  F  A EG ++ +  +LV  +   ++A +L L  +
Sbjct: 15  QSSNERLEFIGDGILEMITKYYLYKRFPDADEGFMTEKKINLVKNDHIGKLAYKLGLHKW 74

Query: 97  IRVSS 101
           + +S 
Sbjct: 75  LLLSK 79


>gi|189189610|ref|XP_001931144.1| predicted protein [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187972750|gb|EDU40249.1| predicted protein [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 949

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 60/151 (39%), Gaps = 16/151 (10%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHS--------YQESYERLEFLGDRILGL 53
           +A R   +E+ IGY F  +    +AL  ++ +            +   RL  LGDR L L
Sbjct: 84  AAARVGRVEESIGYTFKYKLYCIEALKQTNSTTPLYFQGVVINTDCNRRLALLGDRALDL 143

Query: 54  LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
            +S + F  +        +      V+    +    +++L   + +++           +
Sbjct: 144 ALSEIWF--YTGNTLANYTAMSLKTVTRAALNTQGLQINLHKNLILATGATSAT----PN 197

Query: 114 IQADVVESLIAALYLDGG--IEVAGTFVDKY 142
             A+  E+L+ A+Y+D G  +E     ++  
Sbjct: 198 QVAETFEALLGAVYIDSGHDVEAVKRVINTL 228


>gi|307179783|gb|EFN67973.1| Double-stranded RNA-specific editase Adar [Camponotus floridanus]
          Length = 1657

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 174  EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             YKV  ++GP H P FT+ V+I G    +G   +K+ A+  AA   L+ 
Sbjct: 1088 TYKVVGQTGPTHAPIFTIAVQIDGQTY-EGKGRTKKMAKHAAAELALRN 1135


>gi|241779179|ref|XP_002399859.1| tar RNA-binding protein, putative [Ixodes scapularis]
 gi|215508538|gb|EEC17992.1| tar RNA-binding protein, putative [Ixodes scapularis]
          Length = 273

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 1/76 (1%)

Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205
            A++      +    LQE         P Y+     G  H+  F +   ++ L+   G  
Sbjct: 92  PAVEEDGIPGNPVGALQELCMKLRWRPPFYETVIEEGLPHERTFGISCLVNNLSE-MGKG 150

Query: 206 CSKRAAEQVAAAEVLK 221
            SKR A++ AA ++++
Sbjct: 151 KSKRLAKRQAAYKMIQ 166



 Score = 40.1 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRF 189
             + LQE   A+  +TPEYK+    G  H P F
Sbjct: 5   PISILQELC-ARNCLTPEYKLLSVEGAVHAPTF 36


>gi|148277633|ref|NP_001091684.1| adenosine deaminase acting on RNA [Apis mellifera]
 gi|146260809|gb|ABQ14707.1| adenosine deaminase [Apis mellifera]
          Length = 620

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            YKV  ++GP H P FT+ V+I G    +G   +K+ A+  AA   L+ 
Sbjct: 49  VYKVVDQTGPTHAPIFTIAVQIDGQTY-EGKGRTKKMAKHAAAELALRN 96


>gi|321463676|gb|EFX74690.1| hypothetical protein DAPPUDRAFT_251609 [Daphnia pulex]
          Length = 282

 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 61/193 (31%), Gaps = 43/193 (22%)

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV------------------------ 99
               +G+LSV  +++   +T + +A    L   ++                         
Sbjct: 36  PRYNQGQLSVLKSAITCNDTLAVIAVRTGLHLLLQHRLPAKQIEELESFVDHQNKNQHLF 95

Query: 100 ----------SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE--VAGTFVDKYWKQRA 147
                     SS+  +        + AD  E+LI AL  D   E  V    V        
Sbjct: 96  SLEKELVIISSSEGDRVFDIDYPKVYADAFETLIGALLRDCEREDKVIRKVVLNLMGDVI 155

Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           +K           LQ     +  + PE+K         D  F V++++  L    G   S
Sbjct: 156 VKFHNNI--PVCPLQRVNQNR--IKPEFK---EEKNLPDGTFHVILKVKNLQSFHGSGPS 208

Query: 208 KRAAEQVAAAEVL 220
            ++A+  AA   +
Sbjct: 209 MKSAKTAAAKLAI 221


>gi|118085593|ref|XP_418563.2| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 803

 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +YK+  ++GP H P F V VE++GL   +G   +K+ A+  AA
Sbjct: 137 PKNALVQL--HELKPGLQYKMVSQTGPVHAPVFAVAVEVNGLT-FEGTGPTKKKAKMRAA 193

Query: 217 AEVLK 221
              LK
Sbjct: 194 ELALK 198



 Score = 37.4 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 20/67 (29%), Gaps = 7/67 (10%)

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQ 202
           + +     +  ++    L E           Y     +    H   F + V + G    +
Sbjct: 282 RHKMASKAESEKNPVVLLNEL-----RSGLRYVCLSETVEKQHIKSFVMAVRVDGRT-FE 335

Query: 203 GMDCSKR 209
           G   SK+
Sbjct: 336 GSGRSKK 342


>gi|15079052|ref|NP_149803.1| 340R [Invertebrate iridescent virus 6]
 gi|82012085|sp|Q91FI4|340R_IIV6 RecName: Full=DRBM domain-containing protein 340R
 gi|15042421|gb|AAK82201.1|AF303741_342 340R [Invertebrate iridescent virus 6]
          Length = 173

 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP---AQGMDCSKRAAEQVAAA 217
           L E+ H      P Y    ++GPDH P F +   I    P     G   S + A++ AA 
Sbjct: 35  LNEFCHKNKYKPPSYTTLNQNGPDHSPTFNIECRIVDYKPNGKFIGSGLSMKEAKKNAAF 94

Query: 218 EVLKREGIWT 227
           + +K   + T
Sbjct: 95  KTIKELNLLT 104


>gi|147856819|emb|CAN79168.1| hypothetical protein VITISV_028064 [Vitis vinifera]
          Length = 292

 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVAA 216
           KT LQE  H K    PEY  T + GP H+P F   V + GL+ +      S + A+  AA
Sbjct: 12  KTRLQELCHRKRWNPPEYS-TRKDGPPHNPTFXATVSVGGLSFSTDHPARSSKEAQSNAA 70

Query: 217 AEVLK 221
              ++
Sbjct: 71  GLAIQ 75



 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  LQE A  +    P Y  T +SG  H P F   VEI G         +K+ AE  AA
Sbjct: 223 YKNLLQEMARKEGYQLPVYS-TEKSGVSHMPTFLSTVEIEGETFVGQKAKTKKLAEMNAA 281

Query: 217 AEV 219
              
Sbjct: 282 KAA 284


>gi|322518582|sp|B7E321|DRB5_ORYSJ RecName: Full=Double-stranded RNA-binding protein 5; AltName:
           Full=dsRNA-binding protein 2; Short=OsDRB2; AltName:
           Full=dsRNA-binding protein 5
 gi|215765071|dbj|BAG86768.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 404

 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  LQE AH      P Y    RSGP H P F+  VE++G++ A     +K+ AE+ AA
Sbjct: 88  YKNLLQETAHRAGLKLPVYTTV-RSGPGHSPVFSSTVELAGMSFAGDPAKTKKHAEKNAA 146

Query: 217 AEV---LKREGIWT 227
                 LK+  I T
Sbjct: 147 MAAWSSLKQSNIRT 160



 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 29/73 (39%), Gaps = 8/73 (10%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS----KRAAE 212
            K +LQE A       P Y  T R GPDH PRF   V  +G         S     R AE
Sbjct: 2   YKNQLQELAQRSCFSLPSYVCT-REGPDHAPRFKATVTFNGETF---DGPSNCTTLRQAE 57

Query: 213 QVAAAEVLKREGI 225
             AA   L R  +
Sbjct: 58  HAAAEVALARLSL 70


>gi|198476324|ref|XP_001357331.2| GA19915 [Drosophila pseudoobscura pseudoobscura]
 gi|198137644|gb|EAL34400.2| GA19915 [Drosophila pseudoobscura pseudoobscura]
          Length = 477

 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP---AQGMDCSKRAAEQ 213
             + LQE   ++ G+TP Y++    G  H+P F   V          A G   SK+ A+ 
Sbjct: 152 PVSILQEIL-SRRGITPGYELVQIEGAIHEPTFRFRVSFKEKDTPFTAMGAGRSKKEAKH 210

Query: 214 VAAAEVLKRE 223
            AA  ++ + 
Sbjct: 211 AAARALIDKL 220



 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 1/73 (1%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
            K   +    LQE    +    P Y      G  H+  FT+   I       G   SK+ 
Sbjct: 258 DKIVGNPIGLLQELCMQRRWPPPTYATETEMGLPHERLFTIACTIL-QYREIGKGKSKKI 316

Query: 211 AEQVAAAEVLKRE 223
           A++ AA ++  R 
Sbjct: 317 AKRSAAHKMWSRL 329


>gi|301611383|ref|XP_002935222.1| PREDICTED: double-stranded RNA-specific editase B2-like [Xenopus
           (Silurana) tropicalis]
          Length = 731

 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y+   ++GP H P F+V VE++GL   +G   +K+ A+  AA
Sbjct: 112 PKNALVQL--HELKPDLQYRFVSQTGPVHAPVFSVAVEVNGLT-FEGTGPTKKKAKMRAA 168

Query: 217 AEVLK 221
              LK
Sbjct: 169 ELALK 173



 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 7/79 (8%)

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQ 202
           K +     +  ++    L E           Y     +    H  RF + + + G    +
Sbjct: 257 KHKMASPAEREKNPVVMLNEL-----RPGLRYVCLSETVEKQHIKRFVMAMRVDGRT-FE 310

Query: 203 GMDCSKRAAEQVAAAEVLK 221
           G   SK+ A+  AA   L+
Sbjct: 311 GSGRSKKLAKAQAAQNALQ 329


>gi|325530262|sp|D2GVP7|STAU1_AILME RecName: Full=Double-stranded RNA-binding protein Staufen homolog 1
 gi|281351107|gb|EFB26691.1| hypothetical protein PANDA_000813 [Ailuropoda melanoleuca]
          Length = 580

 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G   A+G   +K+ A++ 
Sbjct: 292 MNPISRLAQIQQAKKEKEPEYLLLTERGLPRRREFVMQVKV-GNHTAEGTGTNKKVAKRN 350

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 351 AAENMLEILG 360



 Score = 59.3 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G    +G   SK+ +++ AA  VL+ 
Sbjct: 198 EIALKRNLP-VNFEVARESGPPHMKSFVTRVSV-GEFVGEGEGKSKKISKKNAAIAVLEE 255

Query: 223 E 223
            
Sbjct: 256 L 256


>gi|119596076|gb|EAW75670.1| staufen, RNA binding protein, homolog 1 (Drosophila), isoform CRA_b
           [Homo sapiens]
          Length = 317

 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + L +   AK    PEY +    G      F + V++ G   A+G   +K+ A++ A
Sbjct: 205 NPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKV-GNHTAEGTGTNKKVAKRNA 263

Query: 216 AAEVLKREG 224
           A  +L+  G
Sbjct: 264 AENMLEILG 272



 Score = 58.2 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G    +G   SK+ +++ AA  VL+ 
Sbjct: 110 EIALKRNLP-VNFEVARESGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEE 167

Query: 223 E 223
            
Sbjct: 168 L 168


>gi|322795850|gb|EFZ18529.1| hypothetical protein SINV_15805 [Solenopsis invicta]
          Length = 138

 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 13/118 (11%)

Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH---- 166
           +     DV ESL  A+YLD G+ +   +   Y   ++          K+ ++E       
Sbjct: 17  VPKALGDVFESLAGAIYLDSGMSLDAVWSVYYAIMKSEIEQFSTNVPKSPIRELLELEPE 76

Query: 167 -AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            AKFG             D   R  V V++ G    +G+  + R A+  AA   LK+ 
Sbjct: 77  TAKFGRP-------EKLADG-RRVRVTVDVFGKGSFKGIGRNYRIAKCTAAKCALKKL 126


>gi|224055781|ref|XP_002298650.1| predicted protein [Populus trichocarpa]
 gi|222845908|gb|EEE83455.1| predicted protein [Populus trichocarpa]
          Length = 357

 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215
            K  LQE AH      P Y    RSGP H P FT  VE++G+    G    +K+ AE+ A
Sbjct: 88  YKNLLQETAHRAGLNLPVYTTV-RSGPGHVPVFTCTVELAGMN-FTGEPAKTKKQAEKNA 145

Query: 216 AAE---VLKR 222
           A      LKR
Sbjct: 146 AIAAWSALKR 155



 Score = 62.0 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 26/69 (37%), Gaps = 8/69 (11%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK----RAAE 212
            K +LQE A       P Y    R GPDH PRF   V  +G         S     R AE
Sbjct: 2   FKNQLQELAQRSCFNLPSYACI-REGPDHAPRFKASVNFNGEIFES---PSYCTTLRQAE 57

Query: 213 QVAAAEVLK 221
             AA   L 
Sbjct: 58  HAAAEVALN 66


>gi|194382068|dbj|BAG58789.1| unnamed protein product [Homo sapiens]
          Length = 200

 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
           K  K + +    LQE A       PEY ++   GP H   +T +  +       G   SK
Sbjct: 6   KQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESF-METGKGASK 64

Query: 209 RAAEQVAAAEVLKR 222
           + A++ AA + L +
Sbjct: 65  KQAKRNAAEKFLAK 78


>gi|149022335|gb|EDL79229.1| protein kinase, interferon inducible double stranded RNA dependent
           activator, isoform CRA_a [Rattus norvegicus]
          Length = 230

 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
           K  K + +    LQE A       PEY ++   GP H   +T +  +       G   SK
Sbjct: 36  KQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESF-METGKGASK 94

Query: 209 RAAEQVAAAEVLKR 222
           + A++ AA + L +
Sbjct: 95  KQAKRNAAEKFLAK 108


>gi|291222217|ref|XP_002731114.1| PREDICTED: Double-stranded RNA-binding protein Staufen homolog
           2-like [Saccoglossus kowalevskii]
          Length = 668

 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 158 KTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           KT    L E A       P+YK+   SGP H   F V + ++          S + A+  
Sbjct: 74  KTPMCLLNELA-RYNKTQPQYKLQDESGPAHQKTFNVSLTLNNQVY-DASGSSIKKAQHA 131

Query: 215 AAAEVLKREGI 225
           AA   L++ G+
Sbjct: 132 AAEIALQKCGL 142



 Score = 62.8 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 1/72 (1%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
              +  + L +   AK    P + +    G      F + V I G     G+  +K+ A+
Sbjct: 379 LGMNPVSRLVQIQQAKKEKEPVFTLLQERGQPRKREFIMQVTI-GSNQCTGIGPNKKMAK 437

Query: 213 QVAAAEVLKREG 224
           + AA  +L+  G
Sbjct: 438 RAAAEAMLQLLG 449



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E AH +      ++V   SGP H   F     I G   A+     K+ +++ AAA+VL++
Sbjct: 287 ESAHRRNLP-ISFEVINESGPPHMKTFITRCTI-GEYSAEAEGNGKKVSKKRAAAKVLEQ 344

Query: 223 EGIW 226
             + 
Sbjct: 345 LKVL 348


>gi|91091212|ref|XP_966668.1| PREDICTED: similar to tar RNA binding protein [Tribolium castaneum]
 gi|270013108|gb|EFA09556.1| hypothetical protein TcasGA2_TC011666 [Tribolium castaneum]
          Length = 384

 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           LQE   ++    P Y++    G  H+ +FT+  ++       G   SK+ A+++AA ++ 
Sbjct: 172 LQEMCMSRRWPPPSYEMEHEEGLPHERQFTIACQVL-KFKEVGTGKSKKLAKRMAAHKMW 230

Query: 221 KRE 223
           +  
Sbjct: 231 QAL 233



 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             + LQE   ++ G TP+Y++    G  H+P F   V I+    A G   S
Sbjct: 66  PVSVLQELL-SRRGATPKYELVQIEGAIHEPIFRYRVFINNDLVATGTGRS 115


>gi|159163148|pdb|1UHZ|A Chain A, Solution Structure Of Dsrna Binding Domain In Staufen
           Homolog 2
          Length = 89

 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 1/68 (1%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             + L +   A+    P+Y +    G      F + V++ G   A G   +K+ A++ AA
Sbjct: 8   PISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKV-GNEVATGTGPNKKIAKKNAA 66

Query: 217 AEVLKREG 224
             +L + G
Sbjct: 67  EAMLLQLG 74


>gi|151553859|gb|AAI49062.1| STAU1 protein [Bos taurus]
          Length = 531

 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G   A+G   +K+ A++ 
Sbjct: 239 MNPISRLAQIQQAKKEKEPEYLLLAERGLPRRREFVMQVKV-GNHTAEGSGTNKKVAKRN 297

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 298 AAENMLEILG 307



 Score = 59.3 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G    +G   SK+ +++ AA  VL+ 
Sbjct: 145 EIALKRNLP-VNFEVARESGPPHMKSFVTRVSV-GEFVGEGEGKSKKISKKNAAIAVLEE 202

Query: 223 E 223
            
Sbjct: 203 L 203


>gi|196007066|ref|XP_002113399.1| predicted protein [Trichoplax adhaerens]
 gi|190583803|gb|EDV23873.1| predicted protein [Trichoplax adhaerens]
          Length = 1440

 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 57/148 (38%), Gaps = 18/148 (12%)

Query: 8   TLEKRIGYAFANRSLLEKAL-----THSSISHSYQESYER-LEFLGDRILGLLISTLLFN 61
            ++K + Y F + SLL  AL       +SI    +   ++ LE +GD  L  ++   L+ 
Sbjct: 28  EIQKNLKYDFKDSSLLLTALGKDNKLDTSIGLPGRYGNQQILEMIGDAWLRFVVLYKLYE 87

Query: 62  --HFDSAKEGELSVRFNSLVSAET-CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
                       +     LVS +T   ++ + L L   IR          +      A+ 
Sbjct: 88  MKEHTDGSAKSFNDATKWLVSNDTVLPEIGKRLGLEKCIR--------NITDKKKYLANY 139

Query: 119 VESLIAALYL-DGGIEVAGTFVDKYWKQ 145
            E+++ A  + D  +  +   VD+ W  
Sbjct: 140 TEAILGAAVIDDRNLHRSFQVVDRLWSP 167


>gi|156373860|ref|XP_001629528.1| predicted protein [Nematostella vectensis]
 gi|156216530|gb|EDO37465.1| predicted protein [Nematostella vectensis]
          Length = 949

 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 8/73 (10%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKV-TFRSGPDHDPRFTVVVEISGLAPAQGMDCS-KRAAE 212
           +  K  LQE+A     + P Y V T  SG      F   V   G+     +  S K+AAE
Sbjct: 139 KSYKNILQEFAQGSAKLLPSYTVDTTNSG------FIAEVNFEGVRYKSKIAHSTKKAAE 192

Query: 213 QVAAAEVLKREGI 225
           Q AA   L+  G+
Sbjct: 193 QNAAESALQALGL 205



 Score = 55.9 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTF-RSGPD-HDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            K+ LQE+        P Y+ +    G   +   F   V   G     G    ++AAEQ 
Sbjct: 20  FKSLLQEYCQKMKIDYPSYRTSQCDDGTSKYLGHFVSNVLAVGQNFTGGYCSKRKAAEQD 79

Query: 215 AAAEVLKR 222
           AA + LK 
Sbjct: 80  AAKQALKN 87



 Score = 51.6 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 7/82 (8%)

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203
            Q  L S       K+ LQE    +    P Y  T+  G         VV+  G +   G
Sbjct: 238 DQLYLSSPAINISYKSYLQEHVVQRGWRGPSYMTTYHQGGA-----QTVVQFCGKSL-TG 291

Query: 204 M-DCSKRAAEQVAAAEVLKREG 224
               +K+ +EQ+AA E L   G
Sbjct: 292 KPASTKKLSEQLAAREALVNLG 313


>gi|125564316|gb|EAZ09696.1| hypothetical protein OsI_31979 [Oryza sativa Indica Group]
          Length = 357

 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 29/73 (39%), Gaps = 8/73 (10%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS----KRAAE 212
            K +LQE A       P Y  T R GPDH PRF   V  +G         S     R AE
Sbjct: 2   YKNQLQELAQRSCFSLPSYVCT-REGPDHAPRFKATVTFNGETF---DGPSNCTTLRQAE 57

Query: 213 QVAAAEVLKREGI 225
             AA   L R  +
Sbjct: 58  HAAAEVALARLSL 70



 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  LQE AH      P Y    RSGP H P F+  VE++G++ A     +K+ AE+ AA
Sbjct: 88  YKNLLQETAHRAGLKLPVYTTV-RSGPGHSPVFSSTVELAGMSFAGDPAKTKKHAEKNAA 146

Query: 217 AEV---LKRE 223
                 LK+ 
Sbjct: 147 MAAWSSLKQM 156


>gi|19072786|gb|AAL84638.1|AF484524_1 endoribonuclease Dicer [Mus musculus x Mus spretus]
          Length = 1539

 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%)

Query: 19   NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
            N  L+ +ALT S+ S  +  + ERLE LGD  L   I+T LF  +  A EG LS   +  
Sbjct: 1277 NPGLILQALTLSNASDGF--NLERLEMLGDSFLKHAITTYLFCTYHDAHEGRLSYMRSKK 1334

Query: 79   VSAETCSQVARELDLASFIRVS 100
            VS     ++ ++  L S + VS
Sbjct: 1335 VSNCNLYRLGKKKGLPSRMVVS 1356


>gi|255542426|ref|XP_002512276.1| hypothetical protein RCOM_1429110 [Ricinus communis]
 gi|223548237|gb|EEF49728.1| hypothetical protein RCOM_1429110 [Ricinus communis]
          Length = 568

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 6/71 (8%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215
            K  LQE AH      P Y    RSGP H P F+  VE++G++   G    +K+ A++ A
Sbjct: 88  YKNLLQETAHRAGLKLPVYTTV-RSGPGHVPVFSCTVELAGMS-FTGEPARTKKQAQKNA 145

Query: 216 AAE---VLKRE 223
           A      LKR 
Sbjct: 146 AMAAWSALKRL 156



 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVA 215
            K +LQE A       P Y    R GPDH PRF   V  +G          + R AE  A
Sbjct: 2   YKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKATVNFNGETFESPAFCSTLRQAEHAA 60

Query: 216 AAEVLK 221
           A   L 
Sbjct: 61  AEVALN 66


>gi|327269765|ref|XP_003219663.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog
           2-like [Anolis carolinensis]
          Length = 721

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   A+    PEY +    G      F + V++       G+  +K+ A++ 
Sbjct: 419 MNPISRLAQIQQARREKEPEYLLLSEKGIPRRREFVMQVKVGNY-ITTGIGPNKKIAKRN 477

Query: 215 AAAEVLKREG 224
           AA  +L + G
Sbjct: 478 AAEVMLLQLG 487



 Score = 62.0 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 21/63 (33%), Gaps = 11/63 (17%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           + LQ          P YK     GP H   FTV + +      +    S + A   AA  
Sbjct: 137 SRLQ----------PVYKFLNEQGPAHAKTFTVQLTLGDQTW-EAEGSSIKKAHHSAARR 185

Query: 219 VLK 221
            L 
Sbjct: 186 ALN 188



 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++VT  SGP H   F   V + G   A+G   SK+ +++ AA  VL+ 
Sbjct: 327 EIALKRNMP-VSFEVTKESGPPHMKSFVTHVSV-GEFSAEGEGNSKKLSKKRAAIAVLQE 384

Query: 223 E 223
            
Sbjct: 385 L 385



 Score = 38.5 bits (89), Expect = 0.70,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             F V + +       G   +++AA   AA + L+
Sbjct: 257 KTFHVQLTVGDHEFF-GEGRTRQAARHNAAMKALQ 290


>gi|50511725|gb|AAT77415.1| dsRNA-binding protein LH [Brassica rapa subsp. chinensis]
          Length = 274

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 4/69 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAEQV 214
            K+ LQE+A      TP Y+     GP H P     V ++ +      G   +++AAEQ 
Sbjct: 16  FKSRLQEYAQRYKLPTPLYETIKE-GPSHKPLIQSTVIVNDVRYDSLPGF-FNRKAAEQS 73

Query: 215 AAAEVLKRE 223
           AA   L+  
Sbjct: 74  AAEVALQEL 82



 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 25/63 (39%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           K  LQE+A       P Y+          P+FT  VEI G+        +K+ AE  A  
Sbjct: 103 KNLLQEYAQKMNYAIPLYQCQRSETLGRAPQFTCTVEIGGIKYTGAATKTKKEAEISAGR 162

Query: 218 EVL 220
             L
Sbjct: 163 TAL 165


>gi|327357524|gb|EGE86381.1| 60S ribosomal protein L3 [Ajellomyces dermatitidis ATCC 18188]
          Length = 394

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 86/280 (30%), Gaps = 60/280 (21%)

Query: 1   MSALRYSTLEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58
           +++ + S +  R+        L  L + L   S   + Q + + L  LG  +L    S  
Sbjct: 80  LNSAKLSAIHARLSL-PQRLPLQTLARTLVDESADPTPQFNNKSLSILGGDLLTYYTSEY 138

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLA--------------SFIRV----- 99
           L + +       L     S + A+  + + RE  L                F R+     
Sbjct: 139 LISTYPRLPVKVLWAAMYSYIGAKPLAAMTREWGLEFAAEPGPEVDPGLLQFKRLPPDTV 198

Query: 100 ------SSDLRKDVCSFMTS-----IQADVV------------------------ESLIA 124
                  + LR+D      S     I  D                           +++ 
Sbjct: 199 VETNSNGTFLRRDGGVSKRSTSARIIYGDAFGESALPYPVHHEGVTPNRACANFVRAIVG 258

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YL  G   A  F  +++  R L        R    +L +    +    P  K+   +G
Sbjct: 259 AVYLHAGRPAAKQFYKEHFTSRHLDMASLFSFRQPTRDLSKLCRREGFEDPVAKILSETG 318

Query: 183 P-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              + P F V +        +G   S   A   AAA  LK
Sbjct: 319 RLSNRPVFNVGIFSGPDKLGEGAGGSLSEARFRAAASALK 358


>gi|119474301|ref|XP_001259026.1| RNAse III, putative [Neosartorya fischeri NRRL 181]
 gi|119407179|gb|EAW17129.1| RNAse III, putative [Neosartorya fischeri NRRL 181]
          Length = 155

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 15/133 (11%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISH-------SYQESYERLEFLGDRILGLLISTLLFN 61
           +E  I Y F NR++L +AL   S             +  + L  +GD +L L++    + 
Sbjct: 15  VEDIIHYDFTNRAILYEAL--RSAGALALTGRAHRSDGNKDLAQIGDAVLRLILVMDGYE 72

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
               A  G ++   +S+ S    +Q   +  L + I ++        S    + A  VE+
Sbjct: 73  A--KASRGYINQIVSSMASNPHLAQTGSKAGLENLILINP----SQASVSPGVMAQTVEA 126

Query: 122 LIAALYLDGGIEV 134
           ++ A+YLD  ++V
Sbjct: 127 ILGAVYLDSEMDV 139


>gi|255644888|gb|ACU22944.1| unknown [Glycine max]
          Length = 401

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 6/71 (8%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215
            K  LQE A       P+Y  TFRSG  H P FT  VE++G+    G    +K+ AE+ A
Sbjct: 88  YKNLLQEIAQRVGAPLPQY-FTFRSGLGHLPVFTGTVELAGI-MFTGEPAKNKKQAEKNA 145

Query: 216 AAEV---LKRE 223
           A      LK+ 
Sbjct: 146 AMAAWSSLKQL 156



 Score = 60.9 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 26/70 (37%), Gaps = 10/70 (14%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA-----PAQGMDCSKRAA 211
            K +LQE A       P Y    R GPDH PRF   V  +G              + R A
Sbjct: 2   YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKATVNFNGEIFESPHYC----STLRQA 56

Query: 212 EQVAAAEVLK 221
           E  AA   L 
Sbjct: 57  EHSAAEVALN 66


>gi|74136125|ref|NP_001027924.1| adenosine deaminase ADAR2-a variant [Takifugu rubripes]
 gi|22506831|gb|AAM97655.1| adenosine deaminase ADAR2-a variant [Takifugu rubripes]
          Length = 694

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +YK+  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 69  PKNALMQL--NEIKPGLQYKLLSQTGPVHAPVFVMSVEVNGQ-LFEGSGPTKKKAKLNAA 125

Query: 217 AEVLK 221
            + L+
Sbjct: 126 EKALR 130



 Score = 38.5 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 40/150 (26%), Gaps = 15/150 (10%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F +A E  +++     V  +  S  A   D    +   +          +   A     
Sbjct: 134 QFPNASEAHMAMGRTLSVHTDFTSDQA---DFPDMLF--NAFETSTPVDDSFYLASNSNG 188

Query: 122 LIAALYLDGGI--EVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
              +L ++  +       FV            S    ++    L E          +Y  
Sbjct: 189 SFCSLGIEYPLLPSPVPNFVQAPLPPAPSTYISPTSGKNPVMILNEL-----RPGLKYDF 243

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              SG  H   F + V +      QG   +
Sbjct: 244 VSESGESHAKNFVMSVMVDAQN-FQGSGRN 272


>gi|7798624|gb|AAF69766.1| double-stranded RNA adenosine deaminase RED1A [Takifugu rubripes]
          Length = 692

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +YK+  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 67  PKNALMQL--NEIKPGLQYKLLSQTGPVHAPVFVMSVEVNGQ-LFEGSGPTKKKAKLNAA 123

Query: 217 AEVLK 221
            + L+
Sbjct: 124 EKALR 128



 Score = 38.5 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 40/150 (26%), Gaps = 15/150 (10%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F +A E  +++     V  +  S  A   D    +   +          +   A     
Sbjct: 132 QFPNASEAHMAMGRTLSVHTDFTSDQA---DFPDMLF--NAFETSTPVDDSFYLASNSNG 186

Query: 122 LIAALYLDGGI--EVAGTFVDKYW--KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
              +L ++  +       FV            S    ++    L E          +Y  
Sbjct: 187 SFCSLGIEYPLLPSPVPNFVQAPLPPAPSTYISPTSGKNPVMILNEL-----RPGLKYDF 241

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
              SG  H   F + V +      QG   +
Sbjct: 242 VSESGESHAKNFVMSVMVDAQN-FQGSGRN 270


>gi|47226805|emb|CAG06647.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 678

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +YK+  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 67  PKNALMQL--NEIKPGLQYKLLSQTGPVHAPVFVMSVEVNGQ-LFEGSGPTKKKAKLNAA 123

Query: 217 AEVLK 221
            + L+
Sbjct: 124 EKALR 128



 Score = 36.6 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 13/40 (32%), Gaps = 1/40 (2%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           +     +Y     SG  H   F + V +      QG   +
Sbjct: 232 ELRPGLKYDFVSESGESHAKNFVMSVMVDTQN-FQGSGRN 270


>gi|170037804|ref|XP_001846745.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167881149|gb|EDS44532.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 896

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 1/80 (1%)

Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DC 206
           +K     +   + L E+A  +    P Y +   SGP H   F   V ++GL     + + 
Sbjct: 815 VKINVDGKHPVSILGEYASKRKWNPPRYDLVHESGPGHAKNFVFKVIVNGLEYQPAISNN 874

Query: 207 SKRAAEQVAAAEVLKREGIW 226
           +K+ A+  AA   L++ GI 
Sbjct: 875 TKKDAKATAARFCLQQLGIL 894


>gi|156717296|ref|NP_001096190.1| adenosine deaminase, RNA-specific, B1 [Xenopus (Silurana)
           tropicalis]
 gi|134024214|gb|AAI36175.1| LOC100124739 protein [Xenopus (Silurana) tropicalis]
          Length = 719

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 50/160 (31%), Gaps = 12/160 (7%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV-E 120
            F +A E  L++     V+ +  S  A   D    +   +   K   S           E
Sbjct: 164 QFPNASEAHLAMGRTLSVNTDFTSDQA---DFPDTLF--NGFEKPEQSEHVFFLGSNGNE 218

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           S  +A      +  +  F+       +L      ++    L E          +Y     
Sbjct: 219 SFNSANDYSLSMIGSSNFIQSPLPTPSLFPPASGKNPVMILNEL-----RPGLKYDFVSE 273

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           SG  H   F + V +      +G   +K+ A+  AA   L
Sbjct: 274 SGESHAKNFVMSVTVDNET-FEGSGRNKKLAKARAAQSAL 312



 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +YK+  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 99  PKNALMQL--NEIKPGLQYKLISQTGPVHAPVFIMTVEVNGQV-FEGSGPTKKKAKLNAA 155

Query: 217 AEVLK 221
            + L+
Sbjct: 156 EKALR 160


>gi|326921558|ref|XP_003207024.1| PREDICTED: double-stranded RNA-specific editase B2-like [Meleagris
           gallopavo]
          Length = 720

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +YK+  ++GP H P F V VE++GL   +G   +K+ A+  AA
Sbjct: 101 PKNALVQL--HELKPGLQYKMVSQTGPVHAPVFAVAVEVNGLT-FEGTGPTKKKAKMRAA 157

Query: 217 AEVLK 221
              LK
Sbjct: 158 ELALK 162



 Score = 36.2 bits (83), Expect = 3.7,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 18/60 (30%), Gaps = 7/60 (11%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKR 209
            +  ++    L E           Y     +    H   F + V + G    +G   SK+
Sbjct: 253 AESEKNPVVLLNEL-----RSGLRYVCLSETVEKQHIKSFVMAVRVDGRT-FEGSGRSKK 306


>gi|297460681|ref|XP_591710.4| PREDICTED: staufen, RNA binding protein, homolog 1 (Drosophila)
           [Bos taurus]
 gi|297482107|ref|XP_002692543.1| PREDICTED: staufen, RNA binding protein, homolog 1 (Drosophila)
           [Bos taurus]
 gi|296480970|gb|DAA23085.1| staufen, RNA binding protein, homolog 1 [Bos taurus]
          Length = 601

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G   A+G   +K+ A++ 
Sbjct: 309 MNPISRLAQIQQAKKEKEPEYLLLAERGLPRRREFVMQVKV-GNHTAEGSGTNKKVAKRN 367

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 368 AAENMLEILG 377



 Score = 65.9 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             + PEYK+    GP H   FTV + +      +    S + A+  AAA+ L+
Sbjct: 20  NKIQPEYKLLREQGPAHCKVFTVQLTLGDQHW-EAEGTSIKKAQHTAAAKALE 71



 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G    +G   SK+ +++ AA  VL+ 
Sbjct: 217 EIALKRNLP-VNFEVARESGPPHMKSFVTRVSV-GEFVGEGEGKSKKISKKNAAIAVLEE 274

Query: 223 E 223
            
Sbjct: 275 L 275


>gi|119571203|gb|EAW50818.1| hCG201528 [Homo sapiens]
          Length = 288

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            LQE A       PEY ++   GP H   +T +  +       G   SK+ A++ AA + 
Sbjct: 105 SLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESF-METGKGASKKQAKRNAAEKF 163

Query: 220 LKR 222
           L +
Sbjct: 164 LAK 166



 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 158 KTELQ---EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           KT +Q   E+      + P Y+        H P FT  V +  +    G   SK+ A+  
Sbjct: 8   KTPIQVLHEYGMKTKNI-PVYECERSDVQIHVPTFTFRVTVGDIT-CTGEGTSKKLAKHR 65

Query: 215 AAAEVLK 221
           AA   + 
Sbjct: 66  AAEAAIN 72


>gi|307205142|gb|EFN83585.1| Double-stranded RNA-specific editase Adar [Harpegnathos saltator]
          Length = 661

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           YKV  ++GP H P FT+ V+I G    +G   +K+ A+  AA   L+ 
Sbjct: 91  YKVVGQTGPTHAPIFTIAVQIDGQTY-EGKGRTKKMAKHAAAELALRN 137


>gi|326670793|ref|XP_687110.5| PREDICTED: double-stranded RNA-specific editase 1-like [Danio
           rerio]
          Length = 750

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +YK+  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 127 PKNALMQL--NEIKPGLQYKLLSQTGPVHAPVFVMTVEVNGQ-LFEGSGPTKKKAKLNAA 183

Query: 217 AEVLK 221
            + L+
Sbjct: 184 EKALR 188



 Score = 39.7 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 14/40 (35%), Gaps = 1/40 (2%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           +     +Y+    SG  H   F + V +      +G   +
Sbjct: 291 ELRPGLKYEFVSESGESHAKNFVMSVTVDSQ-MFEGSGRN 329


>gi|224044691|ref|XP_002193461.1| PREDICTED: similar to adenosine deaminase, RNA-specific, B2
           [Taeniopygia guttata]
          Length = 744

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +YK+  ++GP H P F V VE++GL   +G   +K+ A+  AA
Sbjct: 126 PKNALVQL--HELKPGLQYKMVSQTGPVHAPVFAVAVEVNGLT-FEGTGPTKKKAKMRAA 182

Query: 217 AEVLK 221
              LK
Sbjct: 183 ELALK 187



 Score = 36.2 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 20/66 (30%), Gaps = 7/66 (10%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQG 203
           +  +   +  ++    L E           Y     +    H   F + V + G    +G
Sbjct: 271 KHRMAKAESEKNPVVLLNEL-----RSGLRYVCLSETVEKQHIKSFVMAVRVDGRT-FEG 324

Query: 204 MDCSKR 209
              SK+
Sbjct: 325 SGRSKK 330


>gi|327271788|ref|XP_003220669.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog
           1-like isoform 2 [Anolis carolinensis]
          Length = 693

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G+  A+GM  +K+ A++ 
Sbjct: 379 MNPISRLAQIQQAKKEKEPEYMLITERGLPRRREFVMQVKV-GMHTAEGMGTNKKVAKRN 437

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 438 AAENMLELLG 447



 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++VT  SGP H   F   V + G    +G   SK+ +++ AA  VL+ 
Sbjct: 285 EIALKRNLP-VNFEVTRESGPPHMKSFVTKVSV-GEFMGEGEGKSKKISKKNAAIAVLEE 342

Query: 223 E 223
            
Sbjct: 343 L 343



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 1/39 (2%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             + PEYK+    GP H   FTV + +      +    S
Sbjct: 92  NKIQPEYKLLSEQGPAHSKVFTVQLTLGDQHW-EAEGTS 129


>gi|327271786|ref|XP_003220668.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog
           1-like isoform 1 [Anolis carolinensis]
          Length = 695

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G+  A+GM  +K+ A++ 
Sbjct: 381 MNPISRLAQIQQAKKEKEPEYMLITERGLPRRREFVMQVKV-GMHTAEGMGTNKKVAKRN 439

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 440 AAENMLELLG 449



 Score = 58.9 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 6/66 (9%)

Query: 163 EWAHAKFGVT-----PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           E A  +         P  +VT  SGP H   F   V + G    +G   SK+ +++ AA 
Sbjct: 281 EIALKRNLPVNFEFFPLKQVTRESGPPHMKSFVTKVSV-GEFMGEGEGKSKKISKKNAAI 339

Query: 218 EVLKRE 223
            VL+  
Sbjct: 340 AVLEEL 345



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 1/39 (2%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             + PEYK+    GP H   FTV + +      +    S
Sbjct: 88  NKIQPEYKLLSEQGPAHSKVFTVQLTLGDQHW-EAEGTS 125


>gi|215764986|dbj|BAG86683.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 357

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 29/73 (39%), Gaps = 8/73 (10%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS----KRAAE 212
            K +LQE A       P Y  T R GPDH PRF   V  +G         S     R AE
Sbjct: 2   YKNQLQELAQRSCFSLPSYVCT-REGPDHAPRFKATVTFNGETF---DGPSNCTTLRQAE 57

Query: 213 QVAAAEVLKREGI 225
             AA   L R  +
Sbjct: 58  HAAAEVALARLSL 70



 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  LQE AH      P Y    RSGP H P F+  VE++G++ A     +K+ AE+ AA
Sbjct: 88  YKNLLQETAHRAGLKLPVYTTV-RSGPGHSPVFSSTVELAGMSFAGDPAKTKKHAEKNAA 146

Query: 217 AEV---LKRE 223
                 LK+ 
Sbjct: 147 MAAWSSLKQM 156


>gi|42820678|emb|CAF31991.1| possible ribonuclease III [Aspergillus fumigatus]
          Length = 394

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 53/286 (18%), Positives = 82/286 (28%), Gaps = 74/286 (25%)

Query: 2   SALRYSTLEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
            + + + L  R+ Y  +   L  L +AL  +S   +   + E L  LG  +L    S  L
Sbjct: 81  ESAKLAALHARL-YLPSRLPLETLARALVDASADPNPDFNNESLATLGHDLLTNYTSEHL 139

Query: 60  FNHFDSAKEGELSVRFNSL-----VSAETCSQVARELDLASFIRVSSD------------ 102
              +       L+V F ++     V          +  L  F RVS              
Sbjct: 140 ICTYPRLP---LTVIFAAMYAEWGVEMAVAPGGEVDPGLLQFRRVSPGTDLNAEPVTGTA 196

Query: 103 -LRKDVCSFMTSI---------------------------------------QADVVESL 122
                  S+  SI                                        A  V ++
Sbjct: 197 RPNDHRKSWRKSITSRVVYDNEFGDPVKEVADSAAQAVSETHGAQGVTAEQASATFVRAV 256

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFR------RDAKTELQEWAHAKFGVTPEYK 176
           + A+YL  G   A  F +++   R L   +        RD    L      +    P  K
Sbjct: 257 MGAIYLHAGRPAAKRFFEQHILSRHLNISELFNFSQPARD----LTRLCARENFERPVAK 312

Query: 177 VTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +   +G     P F V +        +G   S   A   AA   LK
Sbjct: 313 IISETGRKSRHPVFVVGIYSGQDKLGEGAGASLMEARSRAAVAALK 358


>gi|327274458|ref|XP_003221994.1| PREDICTED: double-stranded RNA-specific editase B2-like [Anolis
           carolinensis]
          Length = 714

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +YK+  ++GP H P F V VE++GL   +G   +K+ A+  AA
Sbjct: 99  PKNALVQL--HELKPGLQYKMVSQTGPVHAPVFAVAVEVNGLT-FEGTGPTKKKAKMRAA 155

Query: 217 AEVLK 221
              LK
Sbjct: 156 ELALK 160



 Score = 36.2 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 7/66 (10%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQG 203
           ++  ++ +  ++    L E           Y     +    H   F + V + G    +G
Sbjct: 241 KQNKRTAESEKNPVVLLNEL-----RSGLRYVCLSETVEKQHIKSFVMAVRVDGRT-FEG 294

Query: 204 MDCSKR 209
              SK+
Sbjct: 295 SGRSKK 300


>gi|148230009|ref|NP_001088561.1| adenosine deaminase, RNA-specific, B1 [Xenopus laevis]
 gi|54648473|gb|AAH84960.1| LOC495438 protein [Xenopus laevis]
          Length = 699

 Score = 66.6 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +YK+  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 79  PKNALMQL--NEIKPGLQYKLISQTGPVHAPVFIMTVEVNGQG-FEGSGPTKKKAKLNAA 135

Query: 217 AEVLK 221
            + L+
Sbjct: 136 EKALR 140



 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 49/160 (30%), Gaps = 12/160 (7%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV-E 120
            F +A E  L++     V+ +  S  A   D    +   +   K   S           E
Sbjct: 144 QFPNASEAHLAMGRTLSVNTDFTSDQA---DFPDTLF--NGFEKPEHSEHVFFLGSNGNE 198

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFR 180
           S   A      +  +  F+       +L      ++    L E          +Y     
Sbjct: 199 SFNPASDYSLSMIGSSNFIQSPLPTPSLFPPASGKNPVMILNEL-----RPGLKYDFVSE 253

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           SG  H   F + V +      +G   +K+ A+  AA   L
Sbjct: 254 SGESHAKNFVMSVTVDNET-FEGSGRNKKLAKARAAQSAL 292


>gi|302306614|ref|NP_983011.2| ABR065Wp [Ashbya gossypii ATCC 10895]
 gi|299788601|gb|AAS50835.2| ABR065Wp [Ashbya gossypii ATCC 10895]
          Length = 344

 Score = 66.6 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 68/223 (30%), Gaps = 33/223 (14%)

Query: 33  SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELD 92
           + + ++    L  LG  +L L     L   +       L+   ++ +     +Q+ R   
Sbjct: 101 AQNKEQHNRSLNILGKNLLTLHAMRRLVERYPRLPVPVLNAAVDAYIGLPVLAQIGRGWG 160

Query: 93  LA--------SFIRVSSDLRKDVC-SFMTSIQAD--------------------VVESLI 123
           +          F+R            F  +   +                     V S++
Sbjct: 161 IESERETVMERFLRQEPSHMTLGRLRFFNNTLKEIDGIRILSSSNMSESASMAMAVRSIV 220

Query: 124 AALYLD-GGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFR 180
            AL+     +++   F+D +   R L   +         EL      +    P  K+   
Sbjct: 221 GALWASTQDLQLVERFLDAHVMSRKLPITQLFMFEQPTRELARLCSREGLERPVSKLIAE 280

Query: 181 SGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +G     P F V V        +G   S + A+  AA + L +
Sbjct: 281 TGRLSKAPVFVVGVFSGEEKLGEGFGSSLKEAKARAATDALMK 323


>gi|121711916|ref|XP_001273573.1| RNAse III, putative [Aspergillus clavatus NRRL 1]
 gi|119401725|gb|EAW12147.1| RNAse III, putative [Aspergillus clavatus NRRL 1]
          Length = 160

 Score = 66.6 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 64/134 (47%), Gaps = 9/134 (6%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISH----SYQESYERLEFLGDRILGLLISTLLF 60
           + + +E+ IGY FA+R++L++AL           + +   + L  +GD +L L++  +L 
Sbjct: 11  KATGVEETIGYKFADRAVLKEALLAPGSVPLAITTERTGNKDLAQIGDAVLRLIL--ILD 68

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            +   A   +++   + +VS    +    ++ L   I  +   +  V      + A+ VE
Sbjct: 69  GYIAKADRAKINDVVSPMVSNPNLAAKGFKVGLEQHILANPSQQGLVSHG---VMANAVE 125

Query: 121 SLIAALYLDGGIEV 134
           +++ A+YLD  +  
Sbjct: 126 AILGAVYLDSNLNT 139


>gi|326931869|ref|XP_003212046.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog
           1-like isoform 2 [Meleagris gallopavo]
          Length = 684

 Score = 66.6 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G+  A+GM  +K+ A++ 
Sbjct: 369 MNPISRLAQIQQAKKEKEPEYMLITERGLPRRREFVMQVKV-GVHTAEGMGTNKKVAKRN 427

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 428 AAENMLEILG 437



 Score = 61.6 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++VT  SGP H   F   V + G    +G   SK+ +++ AA  VL+ 
Sbjct: 275 EIALKRNLP-VNFEVTKESGPPHMKSFVTKVSV-GEFMGEGEGKSKKISKKNAAIAVLEE 332

Query: 223 E 223
            
Sbjct: 333 L 333



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 1/39 (2%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             + PEYK+    GP H   FTV + +      +    S
Sbjct: 88  NKIQPEYKLLSEQGPAHSKVFTVQLTLGDQHW-EAEGTS 125


>gi|326931867|ref|XP_003212045.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog
           1-like isoform 1 [Meleagris gallopavo]
          Length = 712

 Score = 66.6 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G+  A+GM  +K+ A++ 
Sbjct: 381 MNPISRLAQIQQAKKEKEPEYMLITERGLPRRREFVMQVKV-GVHTAEGMGTNKKVAKRN 439

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 440 AAENMLEILG 449



 Score = 59.7 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 6/66 (9%)

Query: 163 EWAHAKFGVT-----PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           E A  +         P  +VT  SGP H   F   V + G    +G   SK+ +++ AA 
Sbjct: 281 EIALKRNLPVNFEFFPLKQVTKESGPPHMKSFVTKVSV-GEFMGEGEGKSKKISKKNAAI 339

Query: 218 EVLKRE 223
            VL+  
Sbjct: 340 AVLEEL 345



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 1/39 (2%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             + PEYK+    GP H   FTV + +      +    S
Sbjct: 88  NKIQPEYKLLSEQGPAHSKVFTVQLTLGDQHW-EAEGTS 125


>gi|61098218|ref|NP_001012849.1| double-stranded RNA-binding protein Staufen homolog 1 [Gallus
           gallus]
 gi|53136660|emb|CAG32659.1| hypothetical protein RCJMB04_32c1 [Gallus gallus]
          Length = 712

 Score = 66.6 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G+  A+GM  +K+ A++ 
Sbjct: 381 MNPISRLAQIQQAKKEKEPEYMLITERGLPRRREFVMQVKV-GVHTAEGMGTNKKVAKRN 439

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 440 AAENMLEILG 449



 Score = 59.7 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 6/66 (9%)

Query: 163 EWAHAKFGVT-----PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           E A  +         P  +VT  SGP H   F   V + G    +G   SK+ +++ AA 
Sbjct: 281 EIALKRNLPVNFEFFPLKQVTKESGPPHMKSFVTKVSV-GEFMGEGEGKSKKISKKNAAI 339

Query: 218 EVLKRE 223
            VL+  
Sbjct: 340 AVLEEL 345



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 1/39 (2%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             + PEYK+    GP H   FTV + +      +    S
Sbjct: 88  NKIQPEYKLLSEQGPAHSKVFTVQLTLGDQHW-EAEGTS 125


>gi|161484666|ref|NP_571685.2| adenosine deaminase, RNA-specific, B1 [Danio rerio]
 gi|148726053|emb|CAN88439.1| adenosine deaminase, RNA-specific, B1 [Danio rerio]
          Length = 720

 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +YK+  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 95  PKNALMQL--NEIKPGLQYKLLSQTGPVHAPVFVMTVEVNGQ-LFEGSGPTKKKAKLNAA 151

Query: 217 AEVLK 221
            + L+
Sbjct: 152 EKALR 156



 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 1/40 (2%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           +     +Y+    SG  H   F + V +      QG   +
Sbjct: 261 ELRPGLKYEFVAESGESHAKNFIMSVTVD-TQKFQGSGRN 299


>gi|149639039|ref|XP_001507858.1| PREDICTED: similar to adenosine deaminase [Ornithorhynchus
           anatinus]
          Length = 699

 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 5/80 (6%)

Query: 142 YWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201
             K+R    G      K  L +    +     +YK+  ++GP H P F + VE++G A  
Sbjct: 65  RIKKRKKTPGPVL--PKNALMQL--NEIKPGLQYKLLSQTGPVHAPMFVMAVEVNGQA-F 119

Query: 202 QGMDCSKRAAEQVAAAEVLK 221
           +G   +K+ A+  AA + L+
Sbjct: 120 EGTGPTKKKAKLHAAEKALR 139



 Score = 62.8 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 51/161 (31%), Gaps = 13/161 (8%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F +A E  L++     V+ +  S  A   D    +   +       +  +       + 
Sbjct: 143 QFPNASEAHLAMGRTLSVNTDFTSDQA---DFPDTLF--NGFETPNQTDSSFYLGSNGDG 197

Query: 122 LIAA--LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
             ++   Y      VA + +       +       ++    L E          +Y+   
Sbjct: 198 SFSSSGDYNLSSATVASSLMQSPLPIPSPYPSSGGKNPVMILNEL-----RPGLKYEFLS 252

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 253 ESGESHAKNFVMAVAVDGQN-FEGSGRNKKLAKARAAQSAL 292


>gi|327270557|ref|XP_003220056.1| PREDICTED: double-stranded RNA-specific editase 1-like [Anolis
           carolinensis]
          Length = 698

 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +YK+  ++GP H P F + VE++G A  +G   +K+ A+  AA
Sbjct: 78  PKNALMQL--NEIKPGLQYKLISQTGPVHAPVFVMAVEVNGQA-FEGSGPTKKKAKLHAA 134

Query: 217 AEVLK 221
            + L+
Sbjct: 135 EKALR 139



 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 51/163 (31%), Gaps = 18/163 (11%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F +A E  L++     V+ +  S  A   D    +   +          +       + 
Sbjct: 143 QFPNASEAHLAMGRTLSVNTDFTSDQA---DFPDTLF--NGFENPAHPDHSFYLDSNGDG 197

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR----RDAKTELQEWAHAKFGVTPEYKV 177
             ++   D G+  AG  V    +        +     ++    L E          +Y  
Sbjct: 198 SFSST-ADYGLSSAG--VSSLSQSSLPAPSPYPSTSGKNPVMILNEL-----RPGLKYDF 249

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
              SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 250 LSESGESHAKNFVMAVSVDGHT-FEGSGRNKKLAKARAAQSAL 291


>gi|15593021|gb|AAL02181.1|AF403112_1 adenosine deaminase [Danio rerio]
 gi|15593015|gb|AAL02179.1| adenosine deaminase [Danio rerio]
          Length = 720

 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +YK+  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 95  PKNALMQL--NEIKPGLQYKLLSQTGPVHAPVFVMTVEVNGQ-LFEGSGPTKKKAKLNAA 151

Query: 217 AEVLK 221
            + L+
Sbjct: 152 EKALR 156



 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 1/40 (2%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           +     +Y+    SG  H   F + V +      QG   +
Sbjct: 261 ELRPGLKYEFVAESGESHAKNFIMSVTVD-TQKFQGSGRN 299


>gi|296200670|ref|XP_002747678.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
           [Callithrix jacchus]
          Length = 577

 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + L +   AK    PEY +    G      F + V++ G   A+G   +K+ A++ A
Sbjct: 286 NPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GNHTAEGTGTNKKVAKRNA 344

Query: 216 AAEVLKREG 224
           A  +L+  G
Sbjct: 345 AENMLEILG 353



 Score = 58.9 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G    +G   SK+ +++ AA  VL+ 
Sbjct: 191 EIALKRNLP-VNFEVARESGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEE 248

Query: 223 E 223
            
Sbjct: 249 L 249


>gi|212532231|ref|XP_002146272.1| 60S ribosomal protein L3 [Penicillium marneffei ATCC 18224]
 gi|210071636|gb|EEA25725.1| 60S ribosomal protein L3 [Penicillium marneffei ATCC 18224]
          Length = 404

 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/270 (16%), Positives = 70/270 (25%), Gaps = 75/270 (27%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           L + L  +S       +   L  LG  +L    +  +   +       +     + +   
Sbjct: 102 LARTLRDASADPHPSFNNASLALLGHDLLANYTTEHIICTYPRLPMTVIYAAMYAYIGPR 161

Query: 83  TCSQVARELD--------------LASFIRVSSDLR---------KDVCSFMTSIQADVV 119
           T + +A E                L  F RV              +    +  SI + VV
Sbjct: 162 TLAAIAGEWGVEFAAVPGPEVDPGLLQFKRVQPGTEIVQDAKKTTRPNTHWRKSIASSVV 221

Query: 120 E-----------------------------------------SLIAALYLDGGIEVAGTF 138
                                                     +L+  +YL  G   A  F
Sbjct: 222 HGDIFGDPDLRTKNPKYVESRLPDIDSIPGVTAEKAASTFVQALVGGIYLHAGRPAAKRF 281

Query: 139 VDKYWKQRALKSGKFR------RDAKTELQEWAHAKFGVTPEYKVTFRSGPDH-DPRFTV 191
             ++   R L   K        RD    L    H +    P  K+   +G    +P F V
Sbjct: 282 FKEHIISRHLDMTKLFSFTQPARD----LANLCHRENIEPPVAKIISETGRHSRNPVFNV 337

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V        +G   S   A   AA   LK
Sbjct: 338 GVFSGKDKLGEGSGASLIEARTRAAVAALK 367


>gi|148726052|emb|CAN88438.1| adenosine deaminase, RNA-specific, B1 [Danio rerio]
          Length = 689

 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +YK+  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 64  PKNALMQL--NEIKPGLQYKLLSQTGPVHAPVFVMTVEVNGQ-LFEGSGPTKKKAKLNAA 120

Query: 217 AEVLK 221
            + L+
Sbjct: 121 EKALR 125



 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 1/40 (2%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           +     +Y+    SG  H   F + V +      QG   +
Sbjct: 230 ELRPGLKYEFVAESGESHAKNFIMSVTVD-TQKFQGSGRN 268


>gi|126341352|ref|XP_001373773.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 727

 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +YK+  ++GP H P F V VE++G    +G   +K+ A+  AA
Sbjct: 108 PKNALVQL--HELKPGLQYKMVSQTGPVHAPVFAVAVEVNGFT-FEGTGPTKKKAKMRAA 164

Query: 217 AEVLK 221
              LK
Sbjct: 165 ELALK 169



 Score = 38.5 bits (89), Expect = 0.70,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 7/60 (11%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKR 209
           G+  ++    L E           Y     +    H   F + V + G    +G   SK+
Sbjct: 260 GEREKNPVVVLNEL-----RSGLRYICLSETVEKQHAKSFVMAVRVDGRT-FEGSGRSKK 313


>gi|73992227|ref|XP_534450.2| PREDICTED: similar to Double-stranded RNA-binding protein Staufen
           homolog isoform 1 [Canis familiaris]
          Length = 684

 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 78/195 (40%), Gaps = 18/195 (9%)

Query: 46  LGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET--CSQVARELD---LASFI-RV 99
           LG+++ G        N  + ++  E++++ N  V+ E+    QVARE     + SF+ +V
Sbjct: 268 LGEQVNGRESEEENLNKSEISQVFEIALKRNLPVNFESFPLKQVARESGPPHMKSFVTKV 327

Query: 100 SSDLRKDVCSFMTSIQA--DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--- 154
           S           +   +  +   +++  L     +      V    K++     + +   
Sbjct: 328 SVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPLPTVER-VKPRIKKKTKSIVRLQSST 386

Query: 155 -----RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
                 +  + L +   AK    PEY +    G      F + V++ G   A+G   +K+
Sbjct: 387 DCGQGMNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GNHTAEGAGTNKK 445

Query: 210 AAEQVAAAEVLKREG 224
            A++ AA  +L+  G
Sbjct: 446 VAKRNAAENMLEILG 460



 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             + PEYK+    GP H   FTV + +      +    S + A+  AAA+ L+
Sbjct: 92  NKIQPEYKLLREQGPAHCKVFTVQLTLGDQHW-EAEGTSIKKAQHTAAAKALE 143


>gi|47225372|emb|CAG11855.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1598

 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E++    G   E+ +T ++GP HD RF   V++     ++    SK+AA Q+
Sbjct: 442 KNPVSVLMEYSQ-HSGNAIEFIMTGQAGPPHDTRFMYRVKVGENLFSEASAPSKKAARQL 500

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 501 AAEEAVKEL 509



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           ++  + L E+A    G   E+ +  +SGP HDPRF + V ++G         S
Sbjct: 310 KNPVSGLMEYAQ-FLGQNCEFLLLDQSGPSHDPRFRMQVMLNGRLFPVAEASS 361


>gi|218283083|ref|ZP_03489178.1| hypothetical protein EUBIFOR_01764 [Eubacterium biforme DSM 3989]
 gi|218216152|gb|EEC89690.1| hypothetical protein EUBIFOR_01764 [Eubacterium biforme DSM 3989]
          Length = 81

 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 3/52 (5%)

Query: 14 GYAFANRSLLEKALTHSSISHSYQ---ESYERLEFLGDRILGLLISTLLFNH 62
          GY + N  +  +A THSS ++ +    +  ERLEF+GD +L +  +T LF +
Sbjct: 12 GYKYKNEDIYLEACTHSSYANEHHRQMDDNERLEFMGDSVLQIWSATQLFFN 63


>gi|70986266|ref|XP_748627.1| RNAse III [Aspergillus fumigatus Af293]
 gi|66846256|gb|EAL86589.1| RNAse III, putative [Aspergillus fumigatus Af293]
 gi|159128228|gb|EDP53343.1| RNAse III, putative [Aspergillus fumigatus A1163]
          Length = 150

 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 15/138 (10%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSIS-------HSYQESYERLEFLGDRILGLLIS 56
            R   +E  I Y F NRS+L +AL   S             +  + L  +GD +L L++ 
Sbjct: 5   ERADVVEDIIHYDFTNRSILYEAL--RSAGALALTGRAHRSDGNKDLAQVGDAVLQLILV 62

Query: 57  TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA 116
              +        G ++   +S  S    +QV  +  L S I ++        S    + A
Sbjct: 63  MDGYEA--KGSRGYINQIVSSTASNPNLAQVGFKAGLESVILINP----SQASVSPGVMA 116

Query: 117 DVVESLIAALYLDGGIEV 134
             VE+++ A+YLD  ++V
Sbjct: 117 QTVEAILGAVYLDSQMDV 134


>gi|332019072|gb|EGI59604.1| Double-stranded RNA-binding protein Staufen-like protein 2
           [Acromyrmex echinatior]
          Length = 358

 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 3/71 (4%)

Query: 152 KFRRDAKTELQEWAHAKFGVT--PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
               +    LQE+   +   T   +Y + +  G  H   FTV V + G    +G    K+
Sbjct: 120 TVGYNYIGMLQEFCQQRQIPTKDIQYDLIYDEGLPHKKIFTVKVSL-GSLCERGTGQCKK 178

Query: 210 AAEQVAAAEVL 220
           +A+Q AA ++L
Sbjct: 179 SAKQEAAKKML 189



 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 6/67 (8%)

Query: 157 AKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
           AK+E   LQE +  K G TP Y        ++  +F   V  +      G   SK+ A+ 
Sbjct: 2   AKSEINLLQELS-IKRGFTPIYNF-SEKNINYQKQFICNVACA-KLITHGTGNSKKEAKH 58

Query: 214 VAAAEVL 220
            AA  +L
Sbjct: 59  NAAKNML 65


>gi|290463409|sp|Q91550|ILF3A_XENLA RecName: Full=Interleukin enhancer-binding factor 3-A; AltName:
           Full=CCAAT box transcription factor subunit; AltName:
           Full=Double-stranded RNA-binding protein 4F.1;
           Short=DsRNA-binding protein 4F.1
          Length = 897

 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G+   QG   +K+ A+
Sbjct: 518 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGVK-FQGSGSNKKVAK 574

Query: 213 QVAAAEVLKRE 223
             AA   L++ 
Sbjct: 575 AYAALSALEKL 585



 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+      +    SK+ A+   A +VL+  G+ T
Sbjct: 412 QLKPGLQYKLISQTGPVHAPVFTMSVEVDDKT-FEASGPSKKTAKLHVAVKVLQDMGLPT 470


>gi|10834850|gb|AAG22859.1| CCAAT box transcription factor p122 subunit [Xenopus laevis]
          Length = 896

 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G+   QG   +K+ A+
Sbjct: 518 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGVK-FQGSGSNKKVAK 574

Query: 213 QVAAAEVLKRE 223
             AA   L++ 
Sbjct: 575 AYAALSALEKL 585



 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+      +    SK+ A+   A +VL+  G+ T
Sbjct: 412 QLKPGLQYKLISQTGPVHAPVFTMSVEVDDKT-FEASGPSKKTAKLHVAVKVLQDMGLPT 470


>gi|147906306|ref|NP_001083930.1| interleukin enhancer-binding factor 3-A [Xenopus laevis]
 gi|83405079|gb|AAI10712.1| CBTF122 protein [Xenopus laevis]
          Length = 902

 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G+   QG   +K+ A+
Sbjct: 518 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGVK-FQGSGSNKKVAK 574

Query: 213 QVAAAEVLKRE 223
             AA   L++ 
Sbjct: 575 AYAALSALEKL 585



 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+      +    SK+ A+   A +VL+  G+ T
Sbjct: 412 QLKPGLQYKLISQTGPVHAPVFTMSVEVDDKT-FEASGPSKKTAKLHVAVKVLQDMGLPT 470


>gi|92097709|gb|AAI15171.1| Adarb1 protein [Danio rerio]
          Length = 233

 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +YK+  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 95  PKNALMQL--NEIKPGLQYKLLSQTGPVHAPVFVMTVEVNGQ-LFEGSGPTKKKAKLNAA 151

Query: 217 AEVLK 221
            + L+
Sbjct: 152 EKALR 156


>gi|15593018|gb|AAL02180.1|AF403111_1 adenosine deaminase [Danio rerio]
 gi|15593024|gb|AAL02182.1|AF403113_1 adenosine deaminase [Danio rerio]
          Length = 689

 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +YK+  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 64  PKNALMQL--NEIKPGLQYKLLSQTGPVHAPVFVMTVEVNGQ-LFEGSGPTKKKAKLNAA 120

Query: 217 AEVLK 221
            + L+
Sbjct: 121 EKALR 125



 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 1/40 (2%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           +     +Y+    SG  H   F + V +      QG   +
Sbjct: 230 ELRPGLKYEFVAESGESHAKNFIMSVTVD-TQKFQGSGRN 268


>gi|63101747|gb|AAH95026.1| Adarb1 protein [Danio rerio]
          Length = 233

 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +YK+  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 95  PKNALMQL--NEIKPGLQYKLLSQTGPVHAPVFVMTVEVNGQ-LFEGSGPTKKKAKLNAA 151

Query: 217 AEVLK 221
            + L+
Sbjct: 152 EKALR 156


>gi|149634773|ref|XP_001511395.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 786

 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y++  ++GP H P F V VE++GL   +G   +K+ A+  AA
Sbjct: 165 PKNALVQL--HELKPGLQYRMVSQTGPVHAPVFAVAVEVNGLT-FEGTGPTKKKAKMRAA 221

Query: 217 AEVLK 221
              L+
Sbjct: 222 ELALR 226



 Score = 37.0 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 20/65 (30%), Gaps = 7/65 (10%)

Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGM 204
           +   S +  ++    L E           Y     +    H   F + V + G    +G 
Sbjct: 314 KTASSVESEKNPVVLLNEL-----RAGLRYVCLSETVEKQHPKSFVMAVRVDGRT-FEGS 367

Query: 205 DCSKR 209
             SK+
Sbjct: 368 GRSKK 372


>gi|297685923|ref|XP_002820521.1| PREDICTED: double-stranded RNA-specific editase B2-like, partial
           [Pongo abelii]
          Length = 345

 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y+   ++GP H P F V VE++GL   +G   +K+ A+  AA
Sbjct: 63  PKNALVQL--HELRPGLQYRTVSQTGPVHAPVFAVAVEVNGLT-FEGTGPTKKKAKMRAA 119

Query: 217 AEVLK 221
              L+
Sbjct: 120 ELALR 124


>gi|296206058|ref|XP_002750047.1| PREDICTED: double-stranded RNA-specific editase B2-like [Callithrix
           jacchus]
          Length = 998

 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y+   ++GP H P F V VE++GL   +G   +K+ A+  AA
Sbjct: 382 PKNALVQL--HELRPGLQYRTVSQTGPVHAPVFAVAVEVNGLT-FEGTGPTKKKAKMRAA 438

Query: 217 AEVLK 221
              L+
Sbjct: 439 ELALR 443


>gi|109088041|ref|XP_001118272.1| PREDICTED: double-stranded RNA-specific editase B2, partial [Macaca
           mulatta]
          Length = 504

 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y+   ++GP H P F V VE++GL   +G   +K+ A+  AA
Sbjct: 126 PKNALVQL--HELRPGLQYRTVSQTGPVHAPVFAVAVEVNGLT-FEGTGPTKKKAKMRAA 182

Query: 217 AEVLK 221
              L+
Sbjct: 183 ELALR 187


>gi|291409985|ref|XP_002721271.1| PREDICTED: staufen [Oryctolagus cuniculus]
          Length = 862

 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G   A+G   +K+ A++ 
Sbjct: 574 MNPISRLAQIQQAKKEREPEYLLLTERGLPRRREFVMQVKV-GNHTAEGTGTNKKVAKRN 632

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 633 AAENMLEILG 642



 Score = 58.2 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G    +G   SK+ +++ AA  VL+ 
Sbjct: 482 EIALKRNLP-VNFEVARESGPPHMRNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEE 539

Query: 223 E 223
            
Sbjct: 540 L 540


>gi|15529496|gb|AAL01305.1|AF403114_1 adenosine deaminase [Gallus gallus]
 gi|15529504|gb|AAL01309.1| adenosine deaminase [Gallus gallus]
          Length = 524

 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +YK+  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 80  PKNALMQL--NEIKPGLQYKLLSQTGPVHAPVFVMAVEVNGQV-FEGSGPTKKKAKLHAA 136

Query: 217 AEVLK 221
            + L+
Sbjct: 137 EKALR 141



 Score = 65.5 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 53/162 (32%), Gaps = 15/162 (9%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F +A E  L++     V+ +  S  A   D    +   +     V S  +       + 
Sbjct: 145 QFPNASEAHLAMGRTLSVNTDFTSDQA---DFPDTLF--NGFETPVPSDASFYLGSNGDG 199

Query: 122 LIAALYLDGGIE--VAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
              +   + G+      + + +     +L       ++    L E          +Y+  
Sbjct: 200 SFGSS-REYGLSSAAVASSLTQLPLPASLPYPTASGKNPVMILNEL-----RPGLKYEFL 253

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 254 SESGESHAKNFVMAVAVDGQT-FEGSGRNKKLAKARAAQSAL 294


>gi|187950663|gb|AAI37478.1| Adenosine deaminase, RNA-specific, B2 (RED2 homolog rat) [Homo
           sapiens]
 gi|187954983|gb|AAI40853.1| Adenosine deaminase, RNA-specific, B2 (RED2 homolog rat) [Homo
           sapiens]
          Length = 739

 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y+   ++GP H P F V VE++GL   +G   +K+ A+  AA
Sbjct: 126 PKNALVQL--HELRPGLQYRTVSQTGPVHAPVFAVAVEVNGLT-FEGTGPTKKKAKMRAA 182

Query: 217 AEVLK 221
              L+
Sbjct: 183 ELALR 187



 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 17/56 (30%), Gaps = 1/56 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +      Y             F + V + G    +G   SK+ A   AA   L+  
Sbjct: 285 RLRAGLRYVCLAEPAERRARSFVMAVSVDGRT-FEGSGRSKKLARGQAAQAALQEL 339


>gi|312095371|ref|XP_003148333.1| hypothetical protein LOAG_12772 [Loa loa]
 gi|307756502|gb|EFO15736.1| hypothetical protein LOAG_12772 [Loa loa]
          Length = 465

 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 31/72 (43%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
            + +  + L +   A+    P++++    G      F + V        +G+  +K+ A+
Sbjct: 263 HQINPVSRLMQVMQARKQNEPKFQLVAERGQSRYKEFVMEVVCDDGLRCEGIGPNKKLAK 322

Query: 213 QVAAAEVLKREG 224
           + AA  VL R G
Sbjct: 323 RAAAEAVLARIG 334



 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVAAAEVLK 221
              +  +  E+ V    GP HD  + +  ++     +  A G   SK+ A+Q A + +L 
Sbjct: 158 CALQMRMNVEFLVLKEEGPAHDRHYLLRCKLISAEQIISADGEGSSKKIAKQNACSLMLT 217

Query: 222 RE 223
           + 
Sbjct: 218 KL 219


>gi|255569490|ref|XP_002525712.1| double-stranded RNA binding protein, putative [Ricinus communis]
 gi|223535012|gb|EEF36695.1| double-stranded RNA binding protein, putative [Ricinus communis]
          Length = 280

 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVA 215
            K  LQE A  +    P Y      G  H P F   VE+ G     G    +K+ AE  A
Sbjct: 7   YKNLLQELAQKEGYGLPSYSTV-TFGESHKPTFASTVEVKGE-FFTGQQTRTKKQAEFNA 64

Query: 216 AA---EVLKR 222
           A    + LK+
Sbjct: 65  AKVAYKALKQ 74


>gi|15529500|gb|AAL01307.1|AF403116_1 adenosine deaminase [Gallus gallus]
 gi|15529508|gb|AAL01311.1|AF403120_1 adenosine deaminase [Gallus gallus]
          Length = 503

 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +YK+  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 59  PKNALMQL--NEIKPGLQYKLLSQTGPVHAPVFVMAVEVNGQV-FEGSGPTKKKAKLHAA 115

Query: 217 AEVLK 221
            + L+
Sbjct: 116 EKALR 120



 Score = 65.5 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 53/162 (32%), Gaps = 15/162 (9%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F +A E  L++     V+ +  S  A   D    +   +     V S  +       + 
Sbjct: 124 QFPNASEAHLAMGRTLSVNTDFTSDQA---DFPDTLF--NGFETPVPSDASFYLGSNGDG 178

Query: 122 LIAALYLDGGIE--VAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
              +   + G+      + + +     +L       ++    L E          +Y+  
Sbjct: 179 SFGSS-REYGLSSAAVASSLTQLPLPASLPYPTASGKNPVMILNEL-----RPGLKYEFL 232

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 233 SESGESHAKNFVMAVAVDGQT-FEGSGRNKKLAKARAAQSAL 273


>gi|8922077|ref|NP_061172.1| double-stranded RNA-specific editase B2 [Homo sapiens]
 gi|33112436|sp|Q9NS39|RED2_HUMAN RecName: Full=Double-stranded RNA-specific editase B2; AltName:
           Full=RNA-dependent adenosine deaminase 3; AltName:
           Full=RNA-editing deaminase 2; AltName: Full=RNA-editing
           enzyme 2; AltName: Full=dsRNA adenosine deaminase B2
 gi|8650031|gb|AAF78094.1| double-stranded RNA specific adenosine deaminase [Homo sapiens]
 gi|55665370|emb|CAH72171.1| adenosine deaminase, RNA-specific, B2 (RED2 homolog rat) [Homo
           sapiens]
 gi|55665458|emb|CAH73405.1| adenosine deaminase, RNA-specific, B2 (RED2 homolog rat) [Homo
           sapiens]
 gi|119606914|gb|EAW86508.1| adenosine deaminase, RNA-specific, B2 (RED2 homolog rat) [Homo
           sapiens]
          Length = 739

 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y+   ++GP H P F V VE++GL   +G   +K+ A+  AA
Sbjct: 126 PKNALVQL--HELRPGLQYRTVSQTGPVHAPVFAVAVEVNGLT-FEGTGPTKKKAKMRAA 182

Query: 217 AEVLK 221
              L+
Sbjct: 183 ELALR 187



 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 17/56 (30%), Gaps = 1/56 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +      Y             F + V + G    +G   SK+ A   AA   L+  
Sbjct: 285 RLRAGLRYVCLAEPAERRARSFVMAVSVDGRT-FEGSGRSKKLARGQAAQAALQEL 339


>gi|222641889|gb|EEE70021.1| hypothetical protein OsJ_29958 [Oryza sativa Japonica Group]
          Length = 325

 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 29/73 (39%), Gaps = 8/73 (10%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS----KRAAE 212
            K +LQE A       P Y  T R GPDH PRF   V  +G         S     R AE
Sbjct: 2   YKNQLQELAQRSCFSLPSYVCT-REGPDHAPRFKATVTFNGETF---DGPSNCTTLRQAE 57

Query: 213 QVAAAEVLKREGI 225
             AA   L R  +
Sbjct: 58  HAAAEVALARLSL 70



 Score = 65.9 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  LQE AH      P Y    RSGP H P F+  VE++G++ A     +K+ AE+ AA
Sbjct: 88  YKNLLQETAHRAGLKLPVYTTV-RSGPGHSPVFSSTVELAGMSFAGDPAKTKKHAEKNAA 146

Query: 217 AEV---LKRE 223
                 LK+ 
Sbjct: 147 MAAWSSLKQM 156


>gi|73992233|ref|XP_867122.1| PREDICTED: similar to Double-stranded RNA-binding protein Staufen
           homolog isoform 7 [Canis familiaris]
          Length = 600

 Score = 66.3 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             + PEYK+    GP H   FTV + +      +    S + A+  AAA+ L+
Sbjct: 20  NKIQPEYKLLREQGPAHCKVFTVQLTLGDQHW-EAEGTSIKKAQHTAAAKALE 71



 Score = 65.1 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G   A+G   +K+ A++ 
Sbjct: 308 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GNHTAEGAGTNKKVAKRN 366

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 367 AAENMLEILG 376



 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 2/83 (2%)

Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
           +   ++  +     +   +++ E A  +      ++V   SGP H   F   V + G   
Sbjct: 194 RRLGEQLDEEENLNKSEISQVFEIALKRNLP-VNFEVARESGPPHMKSFVTKVSV-GEFV 251

Query: 201 AQGMDCSKRAAEQVAAAEVLKRE 223
            +G   SK+ +++ AA  VL+  
Sbjct: 252 GEGEGKSKKISKKNAAIAVLEEL 274


>gi|312219307|emb|CBX99251.1| hypothetical protein [Leptosphaeria maculans]
          Length = 425

 Score = 66.3 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/264 (15%), Positives = 71/264 (26%), Gaps = 59/264 (22%)

Query: 2   SALRYSTLEKRIGYAFANR-SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           S+ +   L  R+         +L + L H S       +   L  LG  +LG   S  L 
Sbjct: 112 SSTKLHALRSRLSLPPRFPLQVLARTLVHPSADPDPAFNNASLSILGRHLLGYYTSEWLL 171

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLA--------------SFIRVSSDL--- 103
            ++       L     + +  +  + VA E  +                F R+ +     
Sbjct: 172 CNYPRLPMSVLFAAVEAYIGPKALATVASEWGIEAAAEPGGEVEPGLLQFKRIKAGEQLP 231

Query: 104 --------RKDVCSFMTSIQ----------------------------ADVVESLIAALY 127
                    K   +    I                                V +LI AL+
Sbjct: 232 AVLTRQVPWKWNVTTTHKIMRTDEFGSKSAPVGAHTLQKTPVPMEEAAQSFVRALIGALH 291

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTE---LQEWAHAKFGVTPEYKVTFRSGPD 184
           L  G  +   F   ++  R L   +   D +T    L      +    P  ++   +G  
Sbjct: 292 LHLGSPLVKRFFRDHFLSRHLDISQLF-DFRTPTRDLSRLCAREGLEPPIARLISETGRL 350

Query: 185 HD-PRFTVVVEISGLAPAQGMDCS 207
              P F   V        +G   S
Sbjct: 351 SAYPVFVAGVYSGRDKLGEGSGSS 374


>gi|73992229|ref|XP_867100.1| PREDICTED: similar to Double-stranded RNA-binding protein Staufen
           homolog isoform 5 [Canis familiaris]
          Length = 600

 Score = 65.9 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             + PEYK+    GP H   FTV + +      +    S + A+  AAA+ L+
Sbjct: 20  NKIQPEYKLLREQGPAHCKVFTVQLTLGDQHW-EAEGTSIKKAQHTAAAKALE 71



 Score = 64.7 bits (157), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G   A+G   +K+ A++ 
Sbjct: 308 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GNHTAEGAGTNKKVAKRN 366

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 367 AAENMLEILG 376



 Score = 58.9 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G    +G   SK+ +++ AA  VL+ 
Sbjct: 214 EIALKRNLP-VNFEVARESGPPHMKSFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEE 271

Query: 223 E 223
            
Sbjct: 272 L 272


>gi|73992225|ref|XP_867078.1| PREDICTED: similar to Double-stranded RNA-binding protein Staufen
           homolog isoform 4 [Canis familiaris]
          Length = 577

 Score = 65.9 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             + PEYK+    GP H   FTV + +      +    S + A+  AAA+ L+
Sbjct: 20  NKIQPEYKLLREQGPAHCKVFTVQLTLGDQHW-EAEGTSIKKAQHTAAAKALE 71



 Score = 64.7 bits (157), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G   A+G   +K+ A++ 
Sbjct: 308 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GNHTAEGAGTNKKVAKRN 366

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 367 AAENMLEILG 376



 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 2/83 (2%)

Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
           +   ++  +     +   +++ E A  +      ++V   SGP H   F   V + G   
Sbjct: 194 RRLGEQLDEEENLNKSEISQVFEIALKRNLP-VNFEVARESGPPHMKSFVTKVSV-GEFV 251

Query: 201 AQGMDCSKRAAEQVAAAEVLKRE 223
            +G   SK+ +++ AA  VL+  
Sbjct: 252 GEGEGKSKKISKKNAAIAVLEEL 274


>gi|297259616|ref|XP_001099701.2| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
           isoform 3 [Macaca mulatta]
          Length = 529

 Score = 65.9 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 78/200 (39%), Gaps = 23/200 (11%)

Query: 41  ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET--CSQVARELD---LAS 95
           ERLE     + G        N  + ++  E++++ N  V+ E+    QVARE     + +
Sbjct: 113 ERLE-----VNGRESEEENLNKSEISQVFEIALKRNLPVNFESFPLKQVARESGPPHMKN 167

Query: 96  FI-RVSSDLRKDVCSFMTSIQA--DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
           F+ +VS           +   +  +   +++  L     +      V    K++     K
Sbjct: 168 FVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAVER-VKPRIKKKTKPIVK 226

Query: 153 FRR--------DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
            +         +  + L +   AK    PEY +    G      F + V++ G   A+G 
Sbjct: 227 PQTSPEYGQGINPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GNHTAEGA 285

Query: 205 DCSKRAAEQVAAAEVLKREG 224
             +K+ A++ AA  +L+  G
Sbjct: 286 GTNKKVAKRNAAENMLEILG 305


>gi|194227228|ref|XP_001917073.1| PREDICTED: similar to Double-stranded RNA-specific editase B2
           (dsRNA adenosine deaminase B2) (RNA-dependent adenosine
           deaminase 3) (RNA-editing deaminase 2) (RNA-editing
           enzyme 2) [Equus caballus]
          Length = 732

 Score = 65.9 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y++  ++GP H P F V VE++GL   +G   +K+ A+  AA
Sbjct: 125 PKNALVQL--HELRPGLQYRMVSQTGPVHAPVFAVAVEVNGLT-FEGTGPTKKKAKMRAA 181

Query: 217 AEVLK 221
              L+
Sbjct: 182 ELALR 186


>gi|28277444|gb|AAH44344.1| Adar protein [Danio rerio]
          Length = 917

 Score = 65.9 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E +  + G   ++  T + GP HDPRF   V++      +    SK+AA Q+
Sbjct: 742 KNPVSVLMEHSQ-RSGHPIQFIKTGQEGPSHDPRFMFRVKVGERLFQEASAPSKKAARQL 800

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 801 AAEEAVKEL 809



 Score = 49.7 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           ++  + L E+A    G T E+ +  +SGP HDPRF + V + G         +
Sbjct: 627 KNPVSGLMEFAQ-HLGYTCEFLLLEQSGPSHDPRFRMQVMLDGRRFPAAEGSN 678



 Score = 39.3 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
              +A + L E+A A+     E ++  +SGP H+P+FT   ++ G 
Sbjct: 865 LNNNAVSGLLEYARARGFAA-EIRLVGQSGPSHEPKFTYQAKLGGR 909


>gi|18858253|ref|NP_571671.1| double-stranded RNA-specific adenosine deaminase [Danio rerio]
 gi|7770273|gb|AAF69672.1| double-stranded RNA-specific editase [Danio rerio]
          Length = 1382

 Score = 65.9 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E +  + G   ++  T + GP HDPRF   V++      +    SK+AA Q+
Sbjct: 742 KNPVSVLMEHSQ-RSGHPIQFIKTGQEGPSHDPRFMFRVKVGERLFQEASAPSKKAARQL 800

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 801 AAEEAVKEL 809



 Score = 49.7 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           ++  + L E+A    G T E+ +  +SGP HDPRF + V + G         +
Sbjct: 627 KNPVSGLMEFAQ-HLGYTCEFLLLEQSGPSHDPRFRMQVMLDGRRFPAAEGSN 678



 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           ++  +SGP H+P+FT   ++ G         +K+  +Q AA   L+
Sbjct: 888 RLVGQSGPSHEPKFTYQAKLGGRWFPAVCASNKKQGKQEAADAALR 933


>gi|145539580|ref|XP_001455480.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124423288|emb|CAK88083.1| unnamed protein product [Paramecium tetraurelia]
          Length = 822

 Score = 65.9 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 86/255 (33%), Gaps = 48/255 (18%)

Query: 11  KRIGYAFANRSLLEKAL-THSS-----------------ISHSYQESYERLEFLGDRILG 52
           + I Y F N+ +L ++     S                  +      ++ LE +GD +L 
Sbjct: 576 EVIEYQFHNKYILYESFRVQGSNMDLDLPLELYYKFLLNSNTPSTRGHQMLELIGDAVLE 635

Query: 53  L-LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL-ASF-----------IRV 99
             ++               L      L+S    S++A   ++  +F           +++
Sbjct: 636 CYIMCNCFNQIIFKFTPTNLYKIKMVLLSNSFLSKIAICYNIMHNFQDTAILQFIETVKL 695

Query: 100 SSDLRKDVCSFM--TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA-------LKS 150
                    +F+    + +D  E+L+ A+++DGG +    F+ K + +            
Sbjct: 696 DEKFTYYNGNFVRVPKVLSDTFEALVGAIFMDGGWQPVCKFLKKVYLKFIPFVCTYLNDI 755

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
                D    + +++ +K G          +G     +F   + I G    +     +R 
Sbjct: 756 DDHVID---RVHQYSASKQGHMDIKSFKQENG-----QFCYEIRIDGQIVGRFTHEHERV 807

Query: 211 AEQVAAAEVLKREGI 225
           A++ A     K+  I
Sbjct: 808 AKEKACESACKKLKI 822



 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 60/162 (37%), Gaps = 29/162 (17%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            S     IG     R  +++A++ +S +     +YE LE LGD IL  L +  +     +
Sbjct: 353 ISEFANSIGIEPNLR--VQRAISRASYNRDI--NYELLETLGDSILKYLATVSVSLGPQN 408

Query: 66  AKEGELSVRFNSLVSAETCSQVARE---LDLASFIRVSSDLRKDVCSFMTSI-------- 114
             E  LS + + +V+     +   +     L  ++R      K     + +I        
Sbjct: 409 TNENILSDQRSQIVNNNFIGKHLFKYQYFGLFHYVRSLGHQTKWFSPVLQNIHSNHIQPE 468

Query: 115 -------------QADVVESLIAALYLDG-GIEVAGTFVDKY 142
                         AD+ ESLIA ++LD   +     F+   
Sbjct: 469 PIKQVSATMLVTFLADIFESLIATVFLDKDSLYDVYKFLLHL 510


>gi|27357042|gb|AAN86547.1| adenosine deaminase [Takifugu rubripes]
          Length = 750

 Score = 65.9 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +YK+  ++GP H P F + VE++G    +GM  +K+ A+  AA
Sbjct: 128 PKNALMQL--NEIKPGLQYKLLSQTGPVHAPVFVMTVEVNGQ-IFEGMGPTKKKAKLNAA 184

Query: 217 AEVLK 221
            + L+
Sbjct: 185 EKALR 189



 Score = 38.1 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 18/67 (26%), Gaps = 6/67 (8%)

Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
                 A  S    ++    L E          +Y     SG  H   F + V +     
Sbjct: 269 PLPPPSAFTSPSSGKNPVMILNEL-----RPGLKYDFVSESGESHAKNFVMSVTVDAQT- 322

Query: 201 AQGMDCS 207
            +G   +
Sbjct: 323 FEGCGRN 329


>gi|74096351|ref|NP_001027865.1| adenosine deaminase ADAR2-b variant [Takifugu rubripes]
 gi|7798622|gb|AAF69765.1| double stranded RNA adenosine deaminase RED1B [Takifugu rubripes]
 gi|22506833|gb|AAM97656.1| adenosine deaminase ADAR2-b variant [Takifugu rubripes]
          Length = 698

 Score = 65.9 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +YK+  ++GP H P F + VE++G    +GM  +K+ A+  AA
Sbjct: 76  PKNALMQL--NEIKPGLQYKLLSQTGPVHAPVFVMTVEVNGQ-IFEGMGPTKKKAKLNAA 132

Query: 217 AEVLK 221
            + L+
Sbjct: 133 EKALR 137



 Score = 38.1 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 18/67 (26%), Gaps = 6/67 (8%)

Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
                 A  S    ++    L E          +Y     SG  H   F + V +     
Sbjct: 217 PLPPPSAFTSPSSGKNPVMILNEL-----RPGLKYDFVSESGESHAKNFVMSVTVDAQT- 270

Query: 201 AQGMDCS 207
            +G   +
Sbjct: 271 FEGCGRN 277


>gi|47220235|emb|CAF99000.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 810

 Score = 65.9 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +YK+  ++GP H P F + VE++G    +GM  +K+ A+  AA
Sbjct: 177 PKNALMQL--NEIKPGLQYKLLSQTGPVHAPVFVMTVEVNGQ-IFEGMGPTKKKAKLNAA 233

Query: 217 AEVLK 221
            + L+
Sbjct: 234 EKALR 238


>gi|45383650|ref|NP_989571.1| RNA-specific adenosine deaminase B1 [Gallus gallus]
 gi|161702982|ref|NP_001104544.1| RNA-specific adenosine deaminase B1 [Gallus gallus]
 gi|15529498|gb|AAL01306.1|AF403115_1 adenosine deaminase [Gallus gallus]
 gi|15529506|gb|AAL01310.1| adenosine deaminase [Gallus gallus]
 gi|53127005|emb|CAG31002.1| hypothetical protein RCJMB04_1i12 [Gallus gallus]
          Length = 701

 Score = 65.9 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +YK+  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 80  PKNALMQL--NEIKPGLQYKLLSQTGPVHAPVFVMAVEVNGQV-FEGSGPTKKKAKLHAA 136

Query: 217 AEVLK 221
            + L+
Sbjct: 137 EKALR 141



 Score = 65.1 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 53/162 (32%), Gaps = 15/162 (9%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F +A E  L++     V+ +  S  A   D    +   +     V S  +       + 
Sbjct: 145 QFPNASEAHLAMGRTLSVNTDFTSDQA---DFPDTLF--NGFETPVPSDASFYLGSNGDG 199

Query: 122 LIAALYLDGGIE--VAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
              +   + G+      + + +     +L       ++    L E          +Y+  
Sbjct: 200 SFGSS-REYGLSSAAVASSLTQLPLPASLPYPTASGKNPVMILNEL-----RPGLKYEFL 253

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 254 SESGESHAKNFVMAVAVDGQT-FEGSGRNKKLAKARAAQSAL 294


>gi|328705090|ref|XP_003242690.1| PREDICTED: interferon-inducible double stranded RNA-dependent
           protein kinase activator A homolog A-like [Acyrthosiphon
           pisum]
          Length = 341

 Score = 65.9 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 1/66 (1%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
               R+    LQE   +     P Y      G  H   FTV   +S      G+  SK+ 
Sbjct: 115 DNDERNPIGMLQELCTSLHLPPPVYITECEDGLPHQRLFTVSCNVSEYKE-TGVGKSKKI 173

Query: 211 AEQVAA 216
           A+++AA
Sbjct: 174 AKRLAA 179



 Score = 62.0 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T LQ+  + +   T +Y++    G    P F   V   G   A G   SK+ A+Q AA  
Sbjct: 18  TLLQDVLNKQGVRTVQYELLQIEGAVSAPSFQYRVT-DGRFVAYGQGKSKKEAKQNAAKA 76

Query: 219 VLK 221
           +L+
Sbjct: 77  LLR 79


>gi|332024427|gb|EGI64625.1| Double-stranded RNA-specific editase Adar [Acromyrmex echinatior]
          Length = 673

 Score = 65.9 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            Y V  ++GP H P FT+ V+I G    +G   +K+ A+  AA   L+ 
Sbjct: 108 TYNVVGQTGPTHAPIFTIAVQIDGQTY-EGKGRTKKMAKHAAAELALRN 155


>gi|291392312|ref|XP_002712549.1| PREDICTED: mitochondrial ribosomal protein L44 [Oryctolagus
           cuniculus]
          Length = 332

 Score = 65.9 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 66/191 (34%), Gaps = 11/191 (5%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
           +  + L   G       ++  L + +       +    + L S E    VAR L +   +
Sbjct: 120 KDNQELSTQGSSFSRTCLTQFLEDEYPDLPAEGIESLVDFLTSEEVVCHVARNLAVEQ-L 178

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-- 155
            +S+D          S+      ++I AL    G E    F+  +   +      F    
Sbjct: 179 TLSADFPVP-----PSVLQQTFFAVIGALLQSSGPERTALFIRDFLITQMTGKELFEMWK 233

Query: 156 --DAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAE 212
             +    L E    +    PE ++T +SG     P + V +       A+G   +   AE
Sbjct: 234 IINPMGLLVEELKKRKISAPESRLTRQSGSTTALPLYFVGLYCDKKLIAEGPGETVLVAE 293

Query: 213 QVAAAEVLKRE 223
           + AA   L++ 
Sbjct: 294 EEAARVALRKL 304


>gi|126322875|ref|XP_001366516.1| PREDICTED: similar to interleukin enhancer binding factor 3, 90kDa,
           [Monodelphis domestica]
          Length = 1084

 Score = 65.9 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +K+ A+
Sbjct: 707 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSNKKVAK 763

Query: 213 QVAAAEVLKRE 223
             AA   L++ 
Sbjct: 764 AFAALTALEKL 774



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 597 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDG-SSFEASGPSKKTAKLHVAVKVLQDMGLPT 655


>gi|15529502|gb|AAL01308.1|AF403117_1 adenosine deaminase [Gallus gallus]
 gi|15529510|gb|AAL01312.1| adenosine deaminase [Gallus gallus]
          Length = 680

 Score = 65.9 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +YK+  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 59  PKNALMQL--NEIKPGLQYKLLSQTGPVHAPVFVMAVEVNGQV-FEGSGPTKKKAKLHAA 115

Query: 217 AEVLK 221
            + L+
Sbjct: 116 EKALR 120



 Score = 65.1 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 53/162 (32%), Gaps = 15/162 (9%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F +A E  L++     V+ +  S  A   D    +   +     V S  +       + 
Sbjct: 124 QFPNASEAHLAMGRTLSVNTDFTSDQA---DFPDTLF--NGFETPVPSDASFYLGSNGDG 178

Query: 122 LIAALYLDGGIE--VAGTFVDKYWKQRALK-SGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
              +   + G+      + + +     +L       ++    L E          +Y+  
Sbjct: 179 SFGSS-REYGLSSAAVASSLTQLPLPASLPYPTASGKNPVMILNEL-----RPGLKYEFL 232

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 233 SESGESHAKNFVMAVAVDGQT-FEGSGRNKKLAKARAAQSAL 273


>gi|195108151|ref|XP_001998656.1| GI24090 [Drosophila mojavensis]
 gi|193915250|gb|EDW14117.1| GI24090 [Drosophila mojavensis]
          Length = 873

 Score = 65.9 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 1/67 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEV 219
           L E         P+Y +   SGP H   F   VEI+G          +K+ A+  AA   
Sbjct: 804 LNELTSKNKWTPPQYTLKDDSGPSHSRMFLFSVEINGQTYTPAQACNNKKEAKLNAAKLC 863

Query: 220 LKREGIW 226
           L+  GI 
Sbjct: 864 LRALGIL 870


>gi|321468964|gb|EFX79946.1| hypothetical protein DAPPUDRAFT_318955 [Daphnia pulex]
          Length = 311

 Score = 65.9 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 63/165 (38%), Gaps = 36/165 (21%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
           T ++++    ++ +RLE LGD +LGLL+S  L+  F   K G+L    ++L   ++   +
Sbjct: 98  TTANLTSCTVKNGDRLEVLGDAVLGLLVSIGLYRTFTKYKPGDLIRHRSALTCNDSFGVL 157

Query: 88  ARELDLASFIR-VSSDLRKDVCSFMTS--------------------------------- 113
           + +  +  F+  +   L  +   F+ +                                 
Sbjct: 158 SVKFGIHKFLLGMPPSLLHNANKFVENQEEASHPYSNKSYSLARSTPQSSIAARCIKVPV 217

Query: 114 IQADVVESLIAALYLDG--GIEVAGTFVDKYWKQRALKSGKFRRD 156
           + ADV ES+  A+++D    +         ++     + G    D
Sbjct: 218 VLADVFESVTGAIFIDSKASLTALQNSFQPFFNDANDQYGSCILD 262



 Score = 36.6 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 6/53 (11%)

Query: 9  LEKRIGYAFANRSLLEKALTHS-----SISHSYQESYERLEFLGDRILGLLIS 56
          L++ +   F N  L   ALT       +++    ++ +RLE LGD +L  L  
Sbjct: 17 LKEILVDRFKNERL-HLALTQPDSTTANLTSCTVKNGDRLEVLGDAVLAYLTC 68


>gi|90076086|dbj|BAE87723.1| unnamed protein product [Macaca fascicularis]
          Length = 502

 Score = 65.9 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 78/200 (39%), Gaps = 23/200 (11%)

Query: 41  ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET--CSQVARELD---LAS 95
           ERLE     + G        N  + ++  E++++ N  V+ E+    QVARE     + +
Sbjct: 86  ERLE-----VNGGESEEENLNKSEISQVFEIALKRNLPVNFESFPLKQVARESGPPHMKN 140

Query: 96  FI-RVSSDLRKDVCSFMTSIQA--DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
           F+ +VS           +   +  +   +++  L     +      V    K++     K
Sbjct: 141 FVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAVER-VKPRIKKKTKPIVK 199

Query: 153 FRR--------DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
            +         +  + L +   AK    PEY +    G      F + V++ G   A+G 
Sbjct: 200 PQTSPEYGQGINPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GNHTAEGA 258

Query: 205 DCSKRAAEQVAAAEVLKREG 224
             +K+ A++ AA  +L+  G
Sbjct: 259 GTNKKVAKRNAAENMLEILG 278


>gi|23238148|ref|NP_694466.1| Vp8 [Kadipiro virus]
 gi|3850247|gb|AAC72049.1| Vp8 [Kadipiro virus]
          Length = 302

 Score = 65.9 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            + K  LQE    +    P Y+   + GPDH P  TV +  +G+   +    S+  AE++
Sbjct: 2   NNVKGMLQELCVKRGLELPVYEKLSKVGPDHAPTITVKLTANGIEVIEA-ASSRAQAEKL 60

Query: 215 AAAEVLKRE 223
           AAA + ++ 
Sbjct: 61  AAATLYEKM 69


>gi|301777794|ref|XP_002924315.1| PREDICTED: double-stranded RNA-specific editase B2-like [Ailuropoda
           melanoleuca]
          Length = 1006

 Score = 65.9 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +          +Y++  ++GP H P F V VE++GL   +G   +K+ A+  AA
Sbjct: 426 PKNALVQL--HDLRPGLQYRMVSQTGPVHAPVFAVAVEVNGLT-FEGTGPTKKKAKMRAA 482

Query: 217 AEVLK 221
              L+
Sbjct: 483 ELALR 487



 Score = 37.4 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 19/68 (27%), Gaps = 11/68 (16%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD---HDPRFTVVVEISGLAPA 201
            R   +    R+    L E           Y       P    H   F + V + G    
Sbjct: 533 PRPGPTAPGERNPVVVLNEL-----RSGLRYVCLAE--PAEKQHAKSFVMAVSVDGRT-F 584

Query: 202 QGMDCSKR 209
           +G   SK+
Sbjct: 585 EGSGRSKK 592


>gi|73949198|ref|XP_544281.2| PREDICTED: similar to Double-stranded RNA-specific editase B2
           (dsRNA adenosine deaminase B2) (RNA dependent adenosine
           deaminase 3) (RNA editing deaminase 2) (RNA editing
           enzyme 2) [Canis familiaris]
          Length = 784

 Score = 65.9 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +          +Y++  ++GP H P F V VE++GL   +G   +K+ A+  AA
Sbjct: 173 PKNALVQL--HDLRPGLQYRMVSQTGPVHAPVFAVAVEVNGLT-FEGTGPTKKKAKMRAA 229

Query: 217 AEVLK 221
              L+
Sbjct: 230 ELALR 234


>gi|242081359|ref|XP_002445448.1| hypothetical protein SORBIDRAFT_07g019380 [Sorghum bicolor]
 gi|241941798|gb|EES14943.1| hypothetical protein SORBIDRAFT_07g019380 [Sorghum bicolor]
          Length = 298

 Score = 65.9 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 4/67 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC--SKRAAEQV 214
            K  LQ +A   +   P YKV    G  H P+F   VE+ G   +        K+ AEQ 
Sbjct: 48  HKNRLQSFAERTYKKPPVYKVESE-GASHQPKFRCTVEVGGQQFSSA-GSFDRKKEAEQD 105

Query: 215 AAAEVLK 221
           AA    +
Sbjct: 106 AARIAYE 112



 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           K+ L E+A       P Y + +   P     F  +V   G +       +K+ AEQ AA 
Sbjct: 137 KSILNEFAVKTKTTWPSYSLVYIEKP--LTLFAAIVVFDGNSYTGESARNKKDAEQNAAR 194

Query: 218 EVLK 221
            V+K
Sbjct: 195 AVIK 198


>gi|224055960|ref|XP_002192699.1| PREDICTED: RNA-specific adenosine deaminase B1 [Taeniopygia
           guttata]
          Length = 768

 Score = 65.9 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +YK+  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 147 PKNALMQL--NEIKPGLQYKLLSQTGPVHAPMFVMAVEVNGQV-FEGSGPTKKKAKLHAA 203

Query: 217 AEVLK 221
            + L+
Sbjct: 204 EKALR 208



 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 6/71 (8%)

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
                ++    L E          +Y+    SG  H   F + V + G    +G   +K+
Sbjct: 297 PTASGKNPVMILNEL-----RPGLKYEFLSESGESHAKNFIMAVAVDGQT-FEGSGRNKK 350

Query: 210 AAEQVAAAEVL 220
            A+  AA   L
Sbjct: 351 LAKARAAQSAL 361


>gi|123240384|emb|CAM17303.1| staufen (RNA binding protein) homolog 1 (Drosophila) [Mus musculus]
          Length = 485

 Score = 65.5 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G   A+G+  +K+ A++ 
Sbjct: 197 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGVGTNKKVAKRN 255

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 256 AAENMLEILG 265



 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G    +G   SK+ +++ AA  VL++
Sbjct: 103 EIALKRNLP-VNFEVARESGPPHMKNFVTRVSV-GEFVGEGEGKSKKISKKNAARAVLEQ 160

Query: 223 E 223
            
Sbjct: 161 L 161


>gi|51896012|gb|AAH82277.1| Stau1 protein [Mus musculus]
          Length = 576

 Score = 65.5 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G   A+G+  +K+ A++ 
Sbjct: 284 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGVGTNKKVAKRN 342

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 343 AAENMLEILG 352



 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G    +G   SK+ +++ AA  VL++
Sbjct: 190 EIALKRNLP-VNFEVARESGPPHMKNFVTRVSV-GEFVGEGEGKSKKISKKNAARAVLEQ 247

Query: 223 E 223
            
Sbjct: 248 L 248


>gi|158186639|ref|NP_001103375.1| double-stranded RNA-binding protein Staufen homolog 1 isoform 2
           [Mus musculus]
 gi|14861636|gb|AAK73752.1|AF395842_1 staufen isoform I2 [Mus musculus]
 gi|12836618|dbj|BAB23736.1| unnamed protein product [Mus musculus]
 gi|15277960|gb|AAH12959.1| Staufen (RNA binding protein) homolog 1 (Drosophila) [Mus musculus]
 gi|123240383|emb|CAM17302.1| staufen (RNA binding protein) homolog 1 (Drosophila) [Mus musculus]
 gi|148674544|gb|EDL06491.1| staufen (RNA binding protein) homolog 1 (Drosophila), isoform CRA_a
           [Mus musculus]
          Length = 489

 Score = 65.5 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G   A+G+  +K+ A++ 
Sbjct: 197 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGVGTNKKVAKRN 255

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 256 AAENMLEILG 265



 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G    +G   SK+ +++ AA  VL++
Sbjct: 103 EIALKRNLP-VNFEVARESGPPHMKNFVTRVSV-GEFVGEGEGKSKKISKKNAARAVLEQ 160

Query: 223 E 223
            
Sbjct: 161 L 161


>gi|74214463|dbj|BAE31085.1| unnamed protein product [Mus musculus]
          Length = 489

 Score = 65.5 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G   A+G+  +K+ A++ 
Sbjct: 197 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGVGTNKKVAKRN 255

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 256 AAENMLEILG 265



 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G    +G   SK+ +++ AA  VL++
Sbjct: 103 EIALKRNLP-VNFEVARESGPPHMKNFVTRVSV-GEFVGEGEGKSKKISKKNAARAVLEQ 160

Query: 223 E 223
            
Sbjct: 161 L 161


>gi|74204587|dbj|BAE35365.1| unnamed protein product [Mus musculus]
          Length = 587

 Score = 65.5 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G   A+G+  +K+ A++ 
Sbjct: 295 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGVGTNKKVAKRN 353

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 354 AAENMLEILG 363



 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G    +G   SK+ +++ AA  VL++
Sbjct: 201 EIALKRNLP-VNFEVARESGPPHMKNFVTRVSV-GEFVGEGEGKSKKISKKNAARAVLEQ 258

Query: 223 E 223
            
Sbjct: 259 L 259


>gi|74198409|dbj|BAE39688.1| unnamed protein product [Mus musculus]
          Length = 577

 Score = 65.5 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G   A+G+  +K+ A++ 
Sbjct: 285 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGVGTNKKVAKRN 343

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 344 AAENMLEILG 353



 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G    +G   SK+ +++ AA  VL++
Sbjct: 191 EIALKRNLP-VNFEVARESGPPHMKNFVTRVSV-GEFVGEGEGKSKKISKKNAARAVLEQ 248

Query: 223 E 223
            
Sbjct: 249 L 249


>gi|74199026|dbj|BAE30728.1| unnamed protein product [Mus musculus]
 gi|74220489|dbj|BAE31464.1| unnamed protein product [Mus musculus]
          Length = 485

 Score = 65.5 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G   A+G+  +K+ A++ 
Sbjct: 197 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGVGTNKKVAKRN 255

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 256 AAENMLEILG 265



 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G    +G   SK+ +++ AA  VL++
Sbjct: 103 EIALKRNLP-VNFEVARESGPPHMKNFVTRVSV-GEFVGEGEGKSKKISKKNAARAVLEQ 160

Query: 223 E 223
            
Sbjct: 161 L 161


>gi|74137731|dbj|BAE24052.1| unnamed protein product [Mus musculus]
          Length = 579

 Score = 65.5 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G   A+G+  +K+ A++ 
Sbjct: 287 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGVGTNKKVAKRN 345

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 346 AAENMLEILG 355



 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G    +G   SK+ +++ AA  VL++
Sbjct: 193 EIALKRNLP-VNFEVARESGPPHMKNFVTRVSV-GEFVGEGEGKSKKISKKNAARAVLEQ 250

Query: 223 E 223
            
Sbjct: 251 L 251


>gi|6755674|ref|NP_035620.1| double-stranded RNA-binding protein Staufen homolog 1 isoform 3
           [Mus musculus]
 gi|9789804|sp|Q9Z108|STAU1_MOUSE RecName: Full=Double-stranded RNA-binding protein Staufen homolog 1
 gi|4335945|gb|AAD17529.1| RNA-binding protein staufen [Mus musculus]
 gi|123240381|emb|CAM17300.1| staufen (RNA binding protein) homolog 1 (Drosophila) [Mus musculus]
 gi|148674545|gb|EDL06492.1| staufen (RNA binding protein) homolog 1 (Drosophila), isoform CRA_b
           [Mus musculus]
          Length = 487

 Score = 65.5 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G   A+G+  +K+ A++ 
Sbjct: 195 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGVGTNKKVAKRN 253

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 254 AAENMLEILG 263



 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G    +G   SK+ +++ AA  VL++
Sbjct: 103 EIALKRNLP-VNFEVARESGPPHMKNFVTRVSV-GEFVGEGEGKSKKISKKNAARAVLEQ 160

Query: 223 E 223
            
Sbjct: 161 L 161


>gi|156374036|ref|XP_001629615.1| predicted protein [Nematostella vectensis]
 gi|156216619|gb|EDO37552.1| predicted protein [Nematostella vectensis]
          Length = 580

 Score = 65.5 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           ++    E+++  + GP HD  F V V ++G    +G   SK+ A+  AA + L+
Sbjct: 5   EYKPGLEFRLVSQEGPPHDTTFVVAVTVNGQTY-EGKGSSKQRAKHDAAEKALQ 57



 Score = 43.9 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 5/60 (8%)

Query: 164 WAHAKFGVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           + +       +Y+  F  G  +HD  F   +E++G+    G   SK+ A+ VAA + L +
Sbjct: 114 YLNELHPTQIDYQ--FEEGTSEHDK-FICNIELNGVE-FSGTGTSKKKAKVVAATKALAK 169


>gi|149639809|ref|XP_001507143.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 719

 Score = 65.5 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V+I G+   +G   +K+ A++ 
Sbjct: 385 MNPISRLAQIQQAKKEREPEYLLVTERGLPRRREFVMQVKI-GVHTTEGAGTNKKVAKRN 443

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 444 AAENMLELLG 453



 Score = 62.0 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             + PEYK+    GP H   FTV + +      Q    S + A+  AA + L+
Sbjct: 92  NKIQPEYKLLSEQGPAHSKVFTVQLTLGDQRW-QSEGTSIKKAQHGAATKALQ 143



 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            F   P  +VT  +GP H   F   V + G    +G   SK+ +++ AA  VL+  
Sbjct: 295 NFEFFPLKQVTKENGPPHMKSFLTKVSV-GEFTGEGEGKSKKISKKNAAIAVLEEL 349


>gi|169595488|ref|XP_001791168.1| hypothetical protein SNOG_00483 [Phaeosphaeria nodorum SN15]
 gi|111070858|gb|EAT91978.1| hypothetical protein SNOG_00483 [Phaeosphaeria nodorum SN15]
          Length = 167

 Score = 65.5 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 59/149 (39%), Gaps = 20/149 (13%)

Query: 1   MSAL--RYSTLEKRIGYAFANRSLLEKAL------THSSIS--HSYQESYERLEFLGDRI 50
           M+ +  + + +E+ IGY + ++ +  +AL       + S+          + LE +GD I
Sbjct: 1   MANIEQKIAIIEQIIGYIYTDKLICLEALQMNMDPMYVSLGGIRHLVRKNKNLETVGDAI 60

Query: 51  LGLLISTLLFNHFDSAKEGELS------VRFNSLVSAETCSQVARELDLASFIRVSSDLR 104
           +  ++    +  F  +    LS                  + + R   + + I +++   
Sbjct: 61  IDAVLCKKWYE-FRDSHGHRLSVEQFDSQIRQRNACNNFFTAIGRANGIDACILMNAG-- 117

Query: 105 KDVCSFMTSIQADVVESLIAALYLDGGIE 133
                    + A+ VE++I A Y+D G+ 
Sbjct: 118 -MGNRASDGMVANTVEAVIGAAYIDAGVN 145


>gi|297736909|emb|CBI26110.3| unnamed protein product [Vitis vinifera]
          Length = 826

 Score = 65.5 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 6/71 (8%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215
            K  LQE AH      P Y    RSGP H P F   V+I+      G    +K+ A++ A
Sbjct: 88  YKNLLQETAHRAGLKLPVYTTV-RSGPGHIPVFFCTVDIA-KMSFTGEPAKTKKQAQKNA 145

Query: 216 AAE---VLKRE 223
           A      LKR 
Sbjct: 146 AMAAWSALKRL 156



 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK-RAAEQVA 215
            K +LQE A       P Y    R GPDH PRF   V  +G        C+  R AE  A
Sbjct: 2   YKNQLQELAQRSCFNLPSYACI-REGPDHAPRFKATVNFNGEVFESPTFCNTLRQAEHAA 60

Query: 216 AAEVLK 221
           A   L 
Sbjct: 61  AEVALN 66


>gi|225432380|ref|XP_002276654.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 563

 Score = 65.5 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 6/71 (8%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215
            K  LQE AH      P Y    RSGP H P F   V+I+      G    +K+ A++ A
Sbjct: 88  YKNLLQETAHRAGLKLPVYTTV-RSGPGHIPVFFCTVDIA-KMSFTGEPAKTKKQAQKNA 145

Query: 216 AAE---VLKRE 223
           A      LKR 
Sbjct: 146 AMAAWSALKRL 156



 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK-RAAEQVA 215
            K +LQE A       P Y    R GPDH PRF   V  +G        C+  R AE  A
Sbjct: 2   YKNQLQELAQRSCFNLPSYACI-REGPDHAPRFKATVNFNGEVFESPTFCNTLRQAEHAA 60

Query: 216 AAEVLK 221
           A   L 
Sbjct: 61  AEVALN 66


>gi|255540729|ref|XP_002511429.1| conserved hypothetical protein [Ricinus communis]
 gi|223550544|gb|EEF52031.1| conserved hypothetical protein [Ricinus communis]
          Length = 185

 Score = 65.5 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 11/127 (8%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              L+K+I     N  LL +A+TH S S   +E+   L  +G  ++   +S         
Sbjct: 44  LEALQKQIK---QNVGLLRRAMTHPSFS---EENNRALSVMGSNVIDTFVSLFSLRKDID 97

Query: 66  AKEGELSVRFNSLVSAET-CSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
               EL+ R   +   ET C+     L L   +RVS        S   ++      +L  
Sbjct: 98  ISSKELNRRIAEISKVETSCAVDGMRLGLDKVVRVS----YKTNSTAPAVVCGAFRALFG 153

Query: 125 ALYLDGG 131
           A+ +D G
Sbjct: 154 AIAIDTG 160


>gi|317419725|emb|CBN81761.1| Double-stranded RNA-specific editase B2 [Dicentrarchus labrax]
          Length = 726

 Score = 65.5 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y++  ++GP H P F++ VE++GL   +G   +K+ A+  AA
Sbjct: 97  PKNALVQL--NELRPGLQYRMVSQTGPVHAPVFSIAVEVNGLT-FEGTGPTKKKAKMRAA 153

Query: 217 AEVLK 221
              LK
Sbjct: 154 ELALK 158



 Score = 43.9 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F + V + G    +G   SK+ A+  AA   L+  
Sbjct: 283 RSFVMAVRVDGR-IFEGCGRSKKLAKNQAAQCALQAL 318


>gi|115298524|ref|YP_762377.1| 47.7 kDa RNAse III [Spodoptera frugiperda ascovirus 1a]
 gi|114416791|emb|CAL44622.1| 47.7 kDa RNAse III [Spodoptera frugiperda ascovirus 1a]
          Length = 417

 Score = 65.5 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 42/248 (16%), Positives = 76/248 (30%), Gaps = 61/248 (24%)

Query: 16  AFANRSLLEK---ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA-----K 67
            F +   ++K   ALT  S  +    +YE  E++GD ++   I   +  ++         
Sbjct: 166 TFRDEGNMDKFQAALT--SKEYDNIFNYEYFEYIGDSVINRFIIDYIRENYTDIHNIQQD 223

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRV------SSDLRKDVCSFMT--------- 112
            G ++   +  V     S+    + L  FIR          L+     F           
Sbjct: 224 IGVMTKLRSIYVGKWNLSKCCVSIGLNKFIRCQYAGVDGRKLQVYGHRFKRNNASGVQCQ 283

Query: 113 ----------------------SIQADVVESLIAALYLD-----GGIEVAGTFVDKYWKQ 145
                                 S+  DV+ES + AL+          ++   FV      
Sbjct: 284 PKVCADSVYTDTTSTHIHRDVISLLEDVMESFVGALWCSLMGSPHCTKIVRQFVYGVIGD 343

Query: 146 RALKSGKFRRD---AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG-LAPA 201
            A        +   A+  LQ  +   FG    ++    + PD    +T  V + G    +
Sbjct: 344 YAGIVEPSYVNLNSARDRLQIASKELFGDRITWRTV--TNPD--TSYTCSVYMDGDTVIS 399

Query: 202 QGM-DCSK 208
                 S+
Sbjct: 400 SATAGRSR 407


>gi|102139807|gb|ABF69992.1| double-stranded RNA-binding (DsRBD) domain-containing protein [Musa
           acuminata]
          Length = 610

 Score = 65.5 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215
            K  LQE AH      P Y    RSGP H P FT  VE++G++   G    +K+ A++ A
Sbjct: 88  YKNLLQETAHRAGLKLPVYTTV-RSGPGHTPIFTCTVELAGMS-FTGDPAKTKKQAQKNA 145

Query: 216 AAEV 219
           A   
Sbjct: 146 AMAA 149



 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK-RAAEQVA 215
            K +LQE A       P Y    R GPDH PRF   V  +G A      CS  R AE  A
Sbjct: 2   YKNQLQELAQRSCFNLPSYASI-REGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHSA 60

Query: 216 AAEVLK 221
           A   L 
Sbjct: 61  AEVALN 66


>gi|281353109|gb|EFB28693.1| hypothetical protein PANDA_013628 [Ailuropoda melanoleuca]
          Length = 637

 Score = 65.5 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +          +Y++  ++GP H P F V VE++GL   +G   +K+ A+  AA
Sbjct: 63  PKNALVQL--HDLRPGLQYRMVSQTGPVHAPVFAVAVEVNGLT-FEGTGPTKKKAKMRAA 119

Query: 217 AEVLK 221
              L+
Sbjct: 120 ELALR 124



 Score = 37.7 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 20/69 (28%), Gaps = 11/69 (15%)

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD---HDPRFTVVVEISGLAP 200
           + R   +    R+    L E           Y       P    H   F + V + G   
Sbjct: 163 EPRPGPTAPGERNPVVVLNEL-----RSGLRYVCLAE--PAEKQHAKSFVMAVSVDGRT- 214

Query: 201 AQGMDCSKR 209
            +G   SK+
Sbjct: 215 FEGSGRSKK 223


>gi|194665306|ref|XP_581374.4| PREDICTED: adenosine deaminase, RNA-specific [Bos taurus]
 gi|297472608|ref|XP_002686059.1| PREDICTED: RNA adenosine deaminase-like [Bos taurus]
 gi|296489763|gb|DAA31876.1| RNA adenosine deaminase-like [Bos taurus]
          Length = 1149

 Score = 65.5 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  T L E  H K G + E+++  R GP HDP+F   V +           SK+AA+Q+
Sbjct: 562 KNPVTTLLECVH-KLGSSCEFRLLSREGPAHDPKFQYCVAMGTHTFPTASAPSKKAAKQM 620

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 621 AAEEAMKAL 629



 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E+A      T E+ +  +SGP H+PRF   V I+G         SK+ A+Q 
Sbjct: 451 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 509

Query: 215 AAAEVL 220
           AA + +
Sbjct: 510 AAMKAM 515



 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+  +Q AA   L
Sbjct: 680 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 738

Query: 221 K 221
           +
Sbjct: 739 R 739


>gi|297798116|ref|XP_002866942.1| ribonuclease III family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297312778|gb|EFH43201.1| ribonuclease III family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 537

 Score = 65.5 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 54/166 (32%), Gaps = 14/166 (8%)

Query: 21  SLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           +LL  A  H S     +   +  + RL FLG  +L L ++      +     G +  R  
Sbjct: 169 TLLYLAFQHPSCDRARARHVKNGHSRLWFLGQYVLELALTEFFLQRYPRESPGPMRERVF 228

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           +L+      +  +   L + I    D+ K +          V  +L  A+YL  G+    
Sbjct: 229 ALIGKRYLPKWIKAASLQNLIFPYDDMDKLIRKEREPPVKSVFWALFGAIYLCYGMPEVY 288

Query: 137 TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
             + + +    +         ++        +     +Y      G
Sbjct: 289 RVLFEVFG---MDPDADECQPRSR-------RQLEDVDYVSVEFEG 324



 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 10/145 (6%)

Query: 18  ANRSL---LEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            N  L   L+    H S       +  +ERLE++G +I  + ++  L      A    L 
Sbjct: 394 RNIELGLGLQLCFLHPSKHKFEHPRFCFERLEYVGQKIQDIAMAERLLMKHLDAPGKWLQ 453

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ----ADVVESLIAALYL 128
            +   L+  + C +  RE  L +FI  S     D       ++      V +++    Y 
Sbjct: 454 EKHRRLLMNKFCGRYLREKRLHNFITYSE-EVHDRYEHNRRLRNPATTAVQQAIHGLAYT 512

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKF 153
             G       + + +    ++    
Sbjct: 513 IYGKPDVRRLMFEVFDFEQIQPKAV 537


>gi|307191761|gb|EFN75203.1| Interferon-inducible double stranded RNA-dependent protein kinase
           activator A [Harpegnathos saltator]
          Length = 336

 Score = 65.5 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            LQ+         PEY      GP H   FT+   +S  +   G+  +K+ A+  AA ++
Sbjct: 113 ALQDLCAENNLQEPEYVPVSDVGPPHARVFTIRCVVSNFSE-DGVGTTKKQAKHDAAKKM 171

Query: 220 LKR 222
           + +
Sbjct: 172 VDK 174



 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             + LQE    K  V P Y++    G  H   FT  V   G   A G    K+ A+  AA
Sbjct: 5   PVSILQEMMVKKGSV-PNYELIHDGGGTHINTFTYKVTCDGFT-ATGTGRCKKDAKHEAA 62

Query: 217 AEVL 220
             +L
Sbjct: 63  NAML 66


>gi|208690891|gb|ACI31221.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Ateles
           geoffroyi]
          Length = 552

 Score = 65.5 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K EL ++   +  V   YK    SGP HD RFT  V I G    +    SK+ A   AA
Sbjct: 10  FKEELNKYRQKQGVVL-RYKELPNSGPPHDRRFTFQVIIDGREFPEAEGRSKKEATNAAA 68

Query: 217 A---EVLKREG 224
               E+L RE 
Sbjct: 69  KVAVEILNREN 79



 Score = 49.7 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 6/58 (10%)

Query: 164 WAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            A  K   T  Y+  V+  +GP+    F    ++       G   +K+ A+Q+AA   
Sbjct: 108 IAQKKRL-TVNYEPCVSGMNGPEG---FHYKCKVGQKEYGIGTGSTKQEAKQLAAKLA 161


>gi|7798620|gb|AAF69764.1| double-stranded RNA adenosine deaminase DRADA [Takifugu rubripes]
          Length = 1194

 Score = 65.5 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E+     G   E+ +T ++GP HD RF   V++     ++    SK+AA Q+
Sbjct: 580 KNPVSVLMEYGQ-HSGNPIEFIMTGQAGPPHDTRFMYRVKVGENLFSEASAPSKKAARQL 638

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 639 AAEEAVKEL 647



 Score = 52.4 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
              +A + L E+A A+     E ++  +SGP H+P+FT   ++ G         +K+  +
Sbjct: 703 LNNNAVSGLLEYAKARGFAA-EIRLVGQSGPPHEPKFTYQAKLGGRWFPAVCASNKKQGK 761

Query: 213 QVAAAEVLK 221
           Q AA   L+
Sbjct: 762 QEAADAALR 770



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           ++  + L E+A    G   E+ +  +SGP HDPRF + V ++G         S
Sbjct: 470 KNPVSGLMEYAQ-FLGQNCEFLLLDQSGPSHDPRFRMQVMLNGRQFPVAEASS 521


>gi|7798626|gb|AAF69767.1| double stranded RNA adenosine deaminase RED2 [Takifugu rubripes]
          Length = 725

 Score = 65.1 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y++  ++GP H P F++ VE++GL   +G   +K+ A+  AA
Sbjct: 100 PKNALVQL--NELRPGLQYRMVSQTGPVHAPIFSIAVEVNGLT-FEGTGPTKKKAKMRAA 156

Query: 217 AEVLK 221
              LK
Sbjct: 157 ELALK 161



 Score = 44.7 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 54/168 (32%), Gaps = 17/168 (10%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F +A +  L++     +S       + + D    +    +     CS   SI +   ES
Sbjct: 165 QFPNAPQAHLAM---GNISNPAADFTSDQADFPDTLF--KEFESSQCSDSLSICSSGKES 219

Query: 122 -LIAALYLDGGIEVAGTFVDKYWKQR----ALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
            L+++  L  G  +  T       Q+     ++  +  +     L E           Y 
Sbjct: 220 KLLSSELLRHGRLLRHTLDLMVQAQQRLGGMVQEPESPKSPVALLNEL-----RPGLRYA 274

Query: 177 VTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                        F + V + G    +G   SK+ A+  AA   L+  
Sbjct: 275 CLSERAEGRKLRSFVMAVRVDGR-IFEGCGRSKKLAKNQAAQCALRAL 321


>gi|304307735|ref|NP_001182007.1| R2D2 protein [Bombyx mori]
 gi|300669731|dbj|BAJ11654.1| R2D2 [Bombyx mori]
          Length = 340

 Score = 65.1 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             T LQE    K G  PEY+   +SGP H   F    +  G +       SKR A+Q AA
Sbjct: 4   PITVLQEMM-MKLGQIPEYECVAQSGPQHQATFEFRCKALGESV-SASARSKREAKQEAA 61

Query: 217 AEVL 220
             +L
Sbjct: 62  RAML 65



 Score = 52.4 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           R     L+E          EY +   +GP H   F+V   I GL        +KR A Q 
Sbjct: 107 RSYVALLKELCEEYKLPGVEYALVADTGPAHMRLFSVRASI-GLHSRDASGTTKRQARQK 165

Query: 215 AAAEV 219
           AAA++
Sbjct: 166 AAADL 170


>gi|514259|gb|AAA19960.1| dsRNA-binding protein 4F.1 [Xenopus laevis]
          Length = 695

 Score = 65.1 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G+   QG   +K+ A+
Sbjct: 518 LTKHGKNPVMELNEKRRGL--KYEMISETGGSHDKRFVMEVEVDGVK-FQGSGSNKKVAK 574

Query: 213 QVAAAEVLKRE 223
             AA   L++ 
Sbjct: 575 AYAALSALEKL 585



 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+      +    SK+ A+   A +VL+  G+ T
Sbjct: 412 QLKPGLQYKLISQTGPVHAPVFTMSVEVDDKT-FEASGPSKKTAKLHVAVKVLQDMGLPT 470


>gi|260800185|ref|XP_002595015.1| hypothetical protein BRAFLDRAFT_237436 [Branchiostoma floridae]
 gi|229280255|gb|EEN51026.1| hypothetical protein BRAFLDRAFT_237436 [Branchiostoma floridae]
          Length = 634

 Score = 65.1 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +     +Y++  +SGP H P F + VE++G    +G   +K+ A+  AA +VL+
Sbjct: 27  ELKPGLQYRLISQSGPPHAPEFVMSVEMNGQT-FKGRGRTKKEAKLRAAEQVLR 79



 Score = 63.9 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +     +Y++   +G  H   F + V I G    +G   SK+ A+  AA   L+
Sbjct: 167 ELRPGLKYELVSETGESHAKNFVMAVTIDGRT-CEGSGRSKKLAKIRAAQAALQ 219


>gi|242013589|ref|XP_002427485.1| mitochondrial 50S ribosomal protein L44, putative [Pediculus
           humanus corporis]
 gi|212511880|gb|EEB14747.1| mitochondrial 50S ribosomal protein L44, putative [Pediculus
           humanus corporis]
          Length = 361

 Score = 65.1 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 83/232 (35%), Gaps = 27/232 (11%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQ---------------ESYERLEFLGDRILGLLI 55
           KR+   F    LL +A TH S     +               +S E L   G++I+   +
Sbjct: 86  KRLKENFT-PELLVRAFTHRSYVSEQETKLQEVGVSNVDISMKSNEELVSKGEKIISDFV 144

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
              +   +       +    + L+S +    V++ L     I +S++   +     T   
Sbjct: 145 PKFVSYFYPRFPMEGIQSIHDYLLSNDVLGHVSKNLGTTDLI-LSAEYPVE-----TETY 198

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR----RDAKTELQEWAHAKFGV 171
           +  ++++I ALY   G+  A  FV  +   +            +D    + E  +     
Sbjct: 199 STTLKAIIGALYECSGLNRANLFVRDFIITQLEGKDIHEFLQIKDPLKIVNEILNRDNRE 258

Query: 172 TPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             E ++  +SG       + V +  +          +   A ++AA++ L+R
Sbjct: 259 PCEPRIICKSGVNTILANYHVGLYSNKELVGHCSGETIDTAIEMAASDALRR 310


>gi|15235580|ref|NP_195467.1| ribonuclease III family protein [Arabidopsis thaliana]
 gi|4468817|emb|CAB38218.1| putative protein [Arabidopsis thaliana]
 gi|7270733|emb|CAB80416.1| putative protein [Arabidopsis thaliana]
 gi|95147308|gb|ABF57289.1| At4g37510 [Arabidopsis thaliana]
 gi|332661403|gb|AEE86803.1| Ribonuclease III family protein [Arabidopsis thaliana]
          Length = 537

 Score = 65.1 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 54/166 (32%), Gaps = 14/166 (8%)

Query: 21  SLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           +LL  A  H S     +   +  + RL FLG  +L L ++      +     G +  R  
Sbjct: 169 TLLYLAFQHPSCDRARARHVKNGHSRLWFLGQYVLELALTEFFLQRYPRESPGPMRERVF 228

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           +L+      +  +   L + I    D+ K +          V  +L  A+YL  G+    
Sbjct: 229 ALIGKRYLPKWIKAASLQNLIFPYDDMDKLIRKEREPPVKSVFWALFGAIYLCFGMPEVY 288

Query: 137 TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
             + + +    +         ++        +     +Y      G
Sbjct: 289 RVLFEVFG---MDPDADECQPRSR-------RQLEDVDYVSVEFEG 324



 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 10/145 (6%)

Query: 18  ANRSL---LEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            N  L   L+    H S       +  +ERLE++G +I  + ++  L      A    L 
Sbjct: 394 RNIELGLGLQLCFLHPSKHKFEHPRFCFERLEYVGQKIQDIAMAERLLMKHLDAPGKWLQ 453

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ----ADVVESLIAALYL 128
            +   L+  + C +  RE  L +FI  S     D       ++      V +++    Y 
Sbjct: 454 EKHRRLLMNKFCGRYLREKRLHNFIIYSE-EVHDRYEHNRRLRNPATTAVQQAIHGLAYT 512

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKF 153
             G       + + +    ++    
Sbjct: 513 IYGKPDVRRLMFEVFDFEQIQPKAV 537


>gi|258570627|ref|XP_002544117.1| hypothetical protein UREG_03634 [Uncinocarpus reesii 1704]
 gi|237904387|gb|EEP78788.1| hypothetical protein UREG_03634 [Uncinocarpus reesii 1704]
          Length = 355

 Score = 65.1 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 72/249 (28%), Gaps = 59/249 (23%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           L + L  +S   S Q +      LG+ +L    S  L + F     G L     + V  +
Sbjct: 101 LARTLVDASADPSLQFNNHSFAVLGNHLLTYYTSEHLISTFPRLPMGVLWASMWAYVGPK 160

Query: 83  TCSQVARELD--------------LASFIRVSSDLRKDVCSFMTS----------IQADV 118
             + ++RE                L  F R+   +     +  T           I  + 
Sbjct: 161 ALAAISREWGVEHVAAPGGEVDPGLLQFKRLPPGINPSELAPNTRAVPRGVSGRVIYDNE 220

Query: 119 V------------------------ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR 154
                                     +++ A+YL  G  +A  F  +++  R L      
Sbjct: 221 FGEARTASSQPPTEVSVTHANATFVRAVMGAIYLHCGRPIAKQFFKEHFMSRQLPMADLF 280

Query: 155 ------RDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCS 207
                 RD    L +    +    P  K+   +G     P F V +        +G   S
Sbjct: 281 SFSQPTRD----LSKLCAREGFEAPVAKIISETGRLSRHPVFVVGIFSGKDQLGEGSGAS 336

Query: 208 KRAAEQVAA 216
              A   AA
Sbjct: 337 LSEARFRAA 345


>gi|195049901|ref|XP_001992785.1| GH13466 [Drosophila grimshawi]
 gi|193899844|gb|EDV98710.1| GH13466 [Drosophila grimshawi]
          Length = 489

 Score = 65.1 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 1/73 (1%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
            K   +    LQE    +    P Y+     G  H+  FT+   I       G   SK+ 
Sbjct: 269 DKIVGNPIGLLQEKCMQRRWPPPSYETETEVGLPHERLFTIACTILHYRE-VGKGKSKKI 327

Query: 211 AEQVAAAEVLKRE 223
           A+++AA ++  R 
Sbjct: 328 AKRLAAHKMWTRL 340



 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA---PAQGMDCS 207
             + LQE   ++ G+TP Y++    G  H+P F   V          A G   S
Sbjct: 153 PVSMLQEML-SRLGITPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRS 205


>gi|298204936|emb|CBI34243.3| unnamed protein product [Vitis vinifera]
          Length = 551

 Score = 65.1 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 6/71 (8%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVA 215
            K  LQE AH      P Y    RSGP H P F+  VEI+G++   G    +K+ A++ A
Sbjct: 88  YKNLLQETAHRAGLNLPVYTTI-RSGPGHVPVFSCTVEIAGMS-FTGEAAKTKKQAQKNA 145

Query: 216 AA---EVLKRE 223
           A      L++ 
Sbjct: 146 AMTAWSALRKL 156



 Score = 61.2 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK-RAAEQVA 215
            K +LQE A       P Y    R GPDH PRF   V  +G        CS  R AE  A
Sbjct: 2   YKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKATVNFNGETFESPSFCSTLRQAEHAA 60

Query: 216 AAEVLK 221
           A   L 
Sbjct: 61  AEVALN 66


>gi|225451189|ref|XP_002271134.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 543

 Score = 65.1 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 6/71 (8%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVA 215
            K  LQE AH      P Y    RSGP H P F+  VEI+G++   G    +K+ A++ A
Sbjct: 88  YKNLLQETAHRAGLNLPVYTTI-RSGPGHVPVFSCTVEIAGMS-FTGEAAKTKKQAQKNA 145

Query: 216 AA---EVLKRE 223
           A      L++ 
Sbjct: 146 AMTAWSALRKL 156



 Score = 61.2 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK-RAAEQVA 215
            K +LQE A       P Y    R GPDH PRF   V  +G        CS  R AE  A
Sbjct: 2   YKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKATVNFNGETFESPSFCSTLRQAEHAA 60

Query: 216 AAEVLK 221
           A   L 
Sbjct: 61  AEVALN 66


>gi|149733337|ref|XP_001503607.1| PREDICTED: staufen, RNA binding protein, homolog 1 (Drosophila)
           [Equus caballus]
          Length = 577

 Score = 65.1 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G   A+G   +K+ A++ 
Sbjct: 285 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GNHTAEGAGTNKKVAKRN 343

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 344 AAENMLEILG 353



 Score = 58.9 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G    +G   SK+ +++ AA  VL+ 
Sbjct: 191 EIALKRNLP-VNFEVARESGPPHMKSFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEE 248

Query: 223 E 223
            
Sbjct: 249 L 249


>gi|73992221|ref|XP_867056.1| PREDICTED: similar to Double-stranded RNA-binding protein Staufen
           homolog isoform 2 [Canis familiaris]
          Length = 697

 Score = 65.1 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G   A+G   +K+ A++ 
Sbjct: 405 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GNHTAEGAGTNKKVAKRN 463

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 464 AAENMLEILG 473



 Score = 58.9 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G    +G   SK+ +++ AA  VL+ 
Sbjct: 311 EIALKRNLP-VNFEVARESGPPHMKSFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEE 368

Query: 223 E 223
            
Sbjct: 369 L 369



 Score = 52.4 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 25/78 (32%), Gaps = 26/78 (33%)

Query: 169 FGVTPEYKVTFRSGPDHDP-------------------------RFTVVVEISGLAPAQG 203
             + PEYK+    GP H                            FTV + +      + 
Sbjct: 92  NKIQPEYKLLREQGPAHCKVNIISAWCGSDFLLKEEAVSEYPHQVFTVQLTLGDQHW-EA 150

Query: 204 MDCSKRAAEQVAAAEVLK 221
              S + A+  AAA+ L+
Sbjct: 151 EGTSIKKAQHTAAAKALE 168


>gi|73992231|ref|XP_867111.1| PREDICTED: similar to Double-stranded RNA-binding protein Staufen
           homolog isoform 6 [Canis familiaris]
          Length = 703

 Score = 65.1 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G   A+G   +K+ A++ 
Sbjct: 411 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GNHTAEGAGTNKKVAKRN 469

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 470 AAENMLEILG 479



 Score = 58.9 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G    +G   SK+ +++ AA  VL+ 
Sbjct: 317 EIALKRNLP-VNFEVARESGPPHMKSFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEE 374

Query: 223 E 223
            
Sbjct: 375 L 375



 Score = 52.4 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 25/78 (32%), Gaps = 26/78 (33%)

Query: 169 FGVTPEYKVTFRSGPDHDP-------------------------RFTVVVEISGLAPAQG 203
             + PEYK+    GP H                            FTV + +      + 
Sbjct: 92  NKIQPEYKLLREQGPAHCKVNIISAWCGSDFLLKEEAVSEYPHQVFTVQLTLGDQHW-EA 150

Query: 204 MDCSKRAAEQVAAAEVLK 221
              S + A+  AAA+ L+
Sbjct: 151 EGTSIKKAQHTAAAKALE 168


>gi|224078725|ref|XP_002188609.1| PREDICTED: staufen [Taeniopygia guttata]
          Length = 697

 Score = 65.1 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 33/70 (47%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V  SG+  A+GM  +K+ A++ 
Sbjct: 381 MNPISRLAQIQQAKKEKEPEYMLITERGLPRRREFVMQVGESGVHTAEGMGTNKKVAKRN 440

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 441 AAENMLEILG 450



 Score = 59.7 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 6/66 (9%)

Query: 163 EWAHAKFGVT-----PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           E A  +         P  +VT  SGP H   F   V + G    +G   SK+ +++ AA 
Sbjct: 281 EIALKRNLPVNFEFFPLKQVTKESGPPHMKSFVTKVSV-GEFMGEGEGKSKKISKKNAAI 339

Query: 218 EVLKRE 223
            VL+  
Sbjct: 340 AVLEEL 345



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 1/39 (2%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             + PEYK+    GP H   FTV + +      +    S
Sbjct: 88  NKIQPEYKLLSEQGPAHSKVFTVQLTLGDQHW-EAEGTS 125


>gi|322798626|gb|EFZ20230.1| hypothetical protein SINV_08208 [Solenopsis invicta]
          Length = 375

 Score = 65.1 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 156 DAKTELQEWAHAKF--GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
           +    LQE    +        YK  ++ G DH   FT+ V +     A G    K++A+Q
Sbjct: 113 NYIGMLQELCQQEKINPKEIHYKDLYQDGQDHQKIFTIEVILGSKK-ATGTGPCKKSAKQ 171

Query: 214 VAAAEVL 220
            AA ++L
Sbjct: 172 EAARKLL 178



 Score = 48.9 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           LQE    K G  P Y  T +   ++   F   V  +    A G   SK+ A+  AA  +L
Sbjct: 11  LQELL-VKKGAVPLYTFTNKRINENRTLFVCNVSYN-KFYASGEGNSKKEAKHTAAENML 68


>gi|311254196|ref|XP_003125793.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like,
           partial [Sus scrofa]
          Length = 1171

 Score = 65.1 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  T L E  H K G + E+++  R GP HDP+F   V +           SK+AA+Q+
Sbjct: 584 KNPVTTLLECVH-KLGSSCEFRLLSREGPAHDPKFQYCVAMGTHTFPTASAPSKKAAKQL 642

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 643 AAEEAMKAL 651



 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E+A      T E+ +  +SGP H+PRF   V I+G         SK+ A+Q 
Sbjct: 473 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 531

Query: 215 AAAEVL 220
           AA + +
Sbjct: 532 AAMKAM 537



 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+  +Q AA   L
Sbjct: 702 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 760

Query: 221 K 221
           +
Sbjct: 761 R 761


>gi|224613372|gb|ACN60265.1| Double-stranded RNA-binding protein Staufen homolog 1 [Salmo salar]
          Length = 416

 Score = 64.7 bits (157), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V + G   A+GM  SK+ A++ 
Sbjct: 91  MNPISRLAQIQQAKKEKEPEYSMMTERGLPRRREFVMQVTVCGH-CAEGMGPSKKVAKRN 149

Query: 215 AAAEVLKREG 224
           AA ++L+  G
Sbjct: 150 AAEKMLELLG 159



 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           ++V   +GP H   F V V + G    +G   SK+ A+++AA  VL+  
Sbjct: 6   FEVLKEAGPPHMKSFMVCVSV-GEFCGEGEGKSKKIAKKLAATAVLEEL 53


>gi|223648210|gb|ACN10863.1| Double-stranded RNA-binding protein Staufen homolog 1 [Salmo salar]
          Length = 706

 Score = 64.7 bits (157), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V + G   A+GM  SK+ A++ 
Sbjct: 381 MNPISRLAQIQQAKKEKEPEYSMMTERGLPRRREFVMQVTVCGH-CAEGMGPSKKVAKRN 439

Query: 215 AAAEVLKREG 224
           AA ++L+  G
Sbjct: 440 AAEKMLELLG 449



 Score = 62.8 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 12/101 (11%)

Query: 133 EVAGTFVDKYWKQRALKSGKFRRDA-------KTEL-Q--EWAHAKFGVTPEYKVTFRSG 182
           + A   +    K+  L       +        K+E+ Q  E A  +      ++V   +G
Sbjct: 245 DAAAKALKTLQKEPILLQQLPETNGEDTENFNKSEISQVFEIALKRNMP-VNFEVLKEAG 303

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           P H   F V V + G    +G   SK+ A+++AA  VL+  
Sbjct: 304 PPHMKSFMVCVSV-GEFCGEGEGKSKKIAKKLAATAVLEEL 343



 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
             + PEYK+    GP H   F+V + +      +    S + A+
Sbjct: 88  NKIQPEYKLLCEQGPAHSKIFSVRLSLGDQHW-EAEGTSIKKAQ 130


>gi|169598446|ref|XP_001792646.1| hypothetical protein SNOG_02027 [Phaeosphaeria nodorum SN15]
 gi|111069119|gb|EAT90239.1| hypothetical protein SNOG_02027 [Phaeosphaeria nodorum SN15]
          Length = 145

 Score = 64.7 bits (157), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 60/145 (41%), Gaps = 13/145 (8%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ------ESYERLEFLGDRILGLLISTLL 59
           + +++  + Y F + +LL++A   S    S +      +  +RL  +GD +L L +    
Sbjct: 4   FKSIQDCVDYHFHDSTLLKEAFLASGAPISNKDIEGPVKGNKRLALVGDAVLRLAVLDEW 63

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
           F    S  EG    R   + + E  ++VA   +L  ++  +   + +       + A  V
Sbjct: 64  FESGTSTAEG--HGRVVEVGTNERLAKVAENWNLKKYMIENPCQQGEAPRE---LLASTV 118

Query: 120 ESLIAALYLDG--GIEVAGTFVDKY 142
           E+++ A++LD             K 
Sbjct: 119 EAILGAVWLDSYQDFGEVQKVFKKL 143


>gi|297259614|ref|XP_001099908.2| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
           isoform 5 [Macaca mulatta]
          Length = 523

 Score = 64.7 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + L +   AK    PEY +    G      F + V++ G   A+G   +K+ A++ A
Sbjct: 232 NPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GNHTAEGAGTNKKVAKRNA 290

Query: 216 AAEVLKREG 224
           A  +L+  G
Sbjct: 291 AENMLEILG 299



 Score = 58.9 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G    +G   SK+ +++ AA  VL+ 
Sbjct: 137 EIALKRNLP-VNFEVARESGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEE 194

Query: 223 E 223
            
Sbjct: 195 L 195


>gi|189241534|ref|XP_969823.2| PREDICTED: similar to adenosine deaminase [Tribolium castaneum]
 gi|270001017|gb|EEZ97464.1| hypothetical protein TcasGA2_TC011295 [Tribolium castaneum]
          Length = 580

 Score = 64.7 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +  V  +Y    + GP H P F V VE+ G     G+  SK+ A+  AA E LK
Sbjct: 27  QLRVGLKYNFIEQRGPSHAPLFKVAVEVDGQTY-YGVGGSKKLAKCKAAEEALK 79



 Score = 34.7 bits (79), Expect = 9.5,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 11/40 (27%), Gaps = 2/40 (5%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
               Y      G  +   F + V I       G   SK+ 
Sbjct: 132 PNVVYTCVENDGSAYAR-FKMTVTIGDEK-FIGTGSSKKQ 169


>gi|109091649|ref|XP_001100004.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
           isoform 6 [Macaca mulatta]
 gi|109091651|ref|XP_001100094.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 1
           isoform 7 [Macaca mulatta]
          Length = 577

 Score = 64.7 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + L +   AK    PEY +    G      F + V++ G   A+G   +K+ A++ A
Sbjct: 286 NPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GNHTAEGAGTNKKVAKRNA 344

Query: 216 AAEVLKREG 224
           A  +L+  G
Sbjct: 345 AENMLEILG 353



 Score = 58.9 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G    +G   SK+ +++ AA  VL+ 
Sbjct: 191 EIALKRNLP-VNFEVARESGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAIAVLEE 248

Query: 223 E 223
            
Sbjct: 249 L 249


>gi|167535410|ref|XP_001749379.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163772245|gb|EDQ85900.1| predicted protein [Monosiga brevicollis MX1]
          Length = 234

 Score = 64.7 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +AK+ LQE   A+    P Y+    SGP+H   +T    +   +   G   SK+ +EQ 
Sbjct: 35  YNAKSTLQETLAARSLPAPIYE-HRASGPEHSLAWTSTCRLYDQSVYTGYGVSKKMSEQN 93

Query: 215 AAAEV 219
           AA   
Sbjct: 94  AAHNA 98



 Score = 44.7 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 7/95 (7%)

Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD-HDPRFTV 191
           E A  F D+ ++  +       RD K+ L +       +  ++     + P  H     +
Sbjct: 138 ETADDFEDQ-YRAPSAPPVPKTRDYKSMLNQLLQRLDCIVADFADAETNVPGVHIRS--I 194

Query: 192 VVEI---SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            V +   + +    G   +KR A+Q AA ++L + 
Sbjct: 195 GVYVKSRNQVFLGVGSAATKRDADQRAAKDLLHKL 229


>gi|148907218|gb|ABR16750.1| unknown [Picea sitchensis]
          Length = 388

 Score = 64.7 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 33/70 (47%), Gaps = 6/70 (8%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQV- 214
            K  LQE AH      P Y  T RSGP H P F  +V++ G     G    +K+ AEQ  
Sbjct: 88  YKNLLQEIAHRAGLSLPVYTTT-RSGPAHLPVFKCIVDVFGTR-FNGKPAATKKQAEQNT 145

Query: 215 --AAAEVLKR 222
             AA   LK+
Sbjct: 146 AMAAWSALKQ 155



 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 29/75 (38%), Gaps = 11/75 (14%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK----RAAE 212
            K +LQE A       P Y    R GPDH PRF   V  +G         +     R AE
Sbjct: 2   YKNQLQELAQRNCFNLPLYGCI-RKGPDHAPRFRATVNFNGEIFES---PNYCSTLRQAE 57

Query: 213 QVAAAEV---LKREG 224
            VAA      L + G
Sbjct: 58  LVAAEVAVNTLSKRG 72


>gi|290463410|sp|Q6DD04|ILF3B_XENLA RecName: Full=Interleukin enhancer-binding factor 3-B; AltName:
           Full=Double-stranded RNA-binding protein 4F.2;
           Short=DsRNA-binding protein 4F.2
          Length = 898

 Score = 64.7 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
             R  K  + E    + G+  +Y++   +G  HD RF + VE+ G+   QG   +K+ A+
Sbjct: 518 LTRHGKNPVMELNEKRRGL--KYELISETGGSHDKRFIMEVEVDGVK-FQGNGSNKKVAK 574

Query: 213 QVAAAEVLKRE 223
             AA   L++ 
Sbjct: 575 AYAALSALEKL 585



 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+      +    SK+ A+   A +VL+  G+ T
Sbjct: 412 QLKPGLQYKLISQTGPVHAPIFTMSVEVDDKT-FEASGPSKKTAKLHVAVKVLQDMGLPT 470


>gi|29126828|gb|AAH47984.1| LOC398578 protein [Xenopus laevis]
          Length = 854

 Score = 64.7 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
             R  K  + E    + G+  +Y++   +G  HD RF + VE+ G+   QG   +K+ A+
Sbjct: 508 LTRHGKNPVMELNEKRRGL--KYELISETGGSHDKRFIMEVEVDGVK-FQGNGSNKKVAK 564

Query: 213 QVAAAEVLKRE 223
             AA   L++ 
Sbjct: 565 AYAALSALEKL 575



 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+      +    SK+ A+   A +VL+  G+ T
Sbjct: 402 QLKPGLQYKLISQTGPVHAPIFTMSVEVDDKT-FEASGPSKKTAKLHVAVKVLQDMGLPT 460


>gi|514260|gb|AAA19961.1| dsRNA-binding protein 4F.2 [Xenopus laevis]
          Length = 800

 Score = 64.7 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
             R  K  + E    + G+  +Y++   +G  HD RF + VE+ G+   QG   +K+ A+
Sbjct: 420 LTRHGKNPVMELNEKRRGL--KYELISETGGSHDKRFIMEVEVDGVK-FQGNGSNKKVAK 476

Query: 213 QVAAAEVLKRE 223
             AA   L++ 
Sbjct: 477 AYAALSALEKL 487



 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+      +    SK+ A+   A +VL+  G+ T
Sbjct: 314 QLKPGLQYKLISQTGPVHAPIFTMSVEVDDKT-FEASGPSKKTAKLHVAVKVLQDMGLPT 372


>gi|50897083|dbj|BAD34722.1| Dicer-related RNase III protein Dcr1p [Tetrahymena thermophila]
          Length = 1450

 Score = 64.7 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 60/204 (29%), Gaps = 62/204 (30%)

Query: 10   EKRIGYAFANRSLLEKALTHSSISHS---------------------------------- 35
            +  I Y F N  LL++  THSS                                      
Sbjct: 1157 QNSINYKFNNIGLLQQVFTHSSYKQDMVCSDLNKIFGTLEKSLNDFITEIQKTEKRQSFI 1216

Query: 36   --YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL 93
                 S + L FLG  I   ++   L+  +  +   EL +    +   +T S ++ +  L
Sbjct: 1217 QLNDVSNDVLSFLGSIIFSQIVLKRLYTRYSQSNPNELDIFMEIICCEQTKSFLSAKFKL 1276

Query: 94   ASFIRVS----------------------SDLRKDVCSFMT--SIQADVVESLIAALYLD 129
              +                             R    ++    SI + + +SL+ A+Y+D
Sbjct: 1277 DQYFIYGIQYQQIFQKINHAANLKRQQNIQSFRNIATNYNKDISILSQLFDSLVGAIYID 1336

Query: 130  --GGIEVAGTFVDKYWKQRALKSG 151
                 E    F ++    + +   
Sbjct: 1337 LQQDFEKTSDFFNQNQHIQLIIKD 1360


>gi|301171314|ref|NP_001180330.1| interleukin enhancer-binding factor 3-B [Xenopus laevis]
 gi|50414914|gb|AAH77828.1| Unknown (protein for MGC:80491) [Xenopus laevis]
          Length = 698

 Score = 64.7 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
             R  K  + E    + G+  +Y++   +G  HD RF + VE+ G+   QG   +K+ A+
Sbjct: 518 LTRHGKNPVMELNEKRRGL--KYELISETGGSHDKRFIMEVEVDGVK-FQGNGSNKKVAK 574

Query: 213 QVAAAEVLKRE 223
             AA   L++ 
Sbjct: 575 AYAALSALEKL 585



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+      +    SK+ A+   A +VL+  G+ T
Sbjct: 412 QLKPGLQYKLISQTGPVHAPIFTMSVEVDDKT-FEASGPSKKTAKLHVAVKVLQDMGLPT 470


>gi|168043507|ref|XP_001774226.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
           patens]
 gi|162674494|gb|EDQ61002.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
           patens]
          Length = 683

 Score = 64.7 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           K  LQE A       P Y  T RSGP H P FT  VE++ ++ +     +K+ AE+ AA 
Sbjct: 153 KNLLQETAQRAGVSLPVYATT-RSGPGHLPVFTCTVEVANMSFSGEAAKTKKQAEKNAAM 211

Query: 218 EV 219
             
Sbjct: 212 AA 213



 Score = 61.6 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 26/69 (37%), Gaps = 8/69 (11%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK----RAAE 212
            K +LQE A       P Y    R GPDH PRF   V  +G         +     R AE
Sbjct: 66  YKNQLQELAQRSCFNLPAYACI-REGPDHAPRFKATVNFNGEVFES---PNYCNTLRQAE 121

Query: 213 QVAAAEVLK 221
             AA   L 
Sbjct: 122 HAAAEVALN 130


>gi|307169155|gb|EFN61971.1| SON protein [Camponotus floridanus]
          Length = 883

 Score = 64.7 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213
           +   + L E+   K    P Y++ F  GPDH   F   V+++G+     +   +K+ A+ 
Sbjct: 809 KHPVSLLGEYCSKKKLGAPVYELCFECGPDHRKNFLFKVKVNGIEYKPSVASPNKKQAKA 868

Query: 214 VAAAEVLKREGIW 226
            AA   L+  G+ 
Sbjct: 869 EAAQICLQSLGLL 881


>gi|190690921|gb|ACE87235.1| protein kinase, interferon-inducible double stranded RNA dependent
           activator protein [synthetic construct]
          Length = 313

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 1/74 (1%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
           K  K + +    LQE A       PEY ++   GP H   +  +  +       G   SK
Sbjct: 119 KQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYATICRLESF-METGKGASK 177

Query: 209 RAAEQVAAAEVLKR 222
           + A++ AA + L +
Sbjct: 178 KQAKRNAAEKFLAK 191



 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 158 KTELQ---EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           KT +Q   E+      + P Y+        H P FT  V +  +    G   SK+ A+  
Sbjct: 33  KTPIQVLHEYGMKTKNI-PVYECERSDVQIHVPTFTFRVTVGDIT-CTGEGTSKKLAKHR 90

Query: 215 AAAEVLK 221
           AA   + 
Sbjct: 91  AAEAAIN 97


>gi|302826370|ref|XP_002994673.1| hypothetical protein SELMODRAFT_432577 [Selaginella moellendorffii]
 gi|300137177|gb|EFJ04260.1| hypothetical protein SELMODRAFT_432577 [Selaginella moellendorffii]
          Length = 176

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/179 (11%), Positives = 53/179 (29%), Gaps = 35/179 (19%)

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM-------------- 111
              G L+   ++ V+ +  +++     L   ++                           
Sbjct: 1   LPPGTLTDLRSAAVNNKWFARLVVRHGLHQHLQHGLVELDCEIRKFVQNVKEKPDASCFE 60

Query: 112 ----TSIQADVVESLIAALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWA 165
                 +  D++ES+  A+++D   ++   +  V        +     R      L E  
Sbjct: 61  DLSAPKVLGDLLESITGAIFVDTNFDLERLWRVVLPLLSP-LVTPATLRFHPVHILMELC 119

Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS----KRAAEQVAAAEVL 220
             K      ++    +         V V     +  +    S    +++A+  AA ++L
Sbjct: 120 ARKGMKVSFFRTEATTT-------EVRVTFGEESLVE---TSQEKPRKSAKIDAALKML 168


>gi|195037815|ref|XP_001990356.1| GH18282 [Drosophila grimshawi]
 gi|193894552|gb|EDV93418.1| GH18282 [Drosophila grimshawi]
          Length = 833

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEV 219
           L E         P+Y +   SGP H   F   VEI+G +        +K+ A+  AA   
Sbjct: 764 LNELTSKNRWTPPQYTLRGDSGPSHSRMFLFSVEINGQSYTPAQSCNNKKEAKMNAAKLC 823

Query: 220 LKREGIW 226
           L+  GI 
Sbjct: 824 LRALGIL 830


>gi|326510101|dbj|BAJ87267.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 304

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVA 215
            K++LQ +A  +    P Y    R+GP H P F   V I G       D  + + AE  A
Sbjct: 114 YKSQLQVYAQKRHKDLPSYDTI-RNGPPHAPLFRSTVTIDGRTFESPQDYHTTKEAEFAA 172

Query: 216 AAEVL 220
           A   L
Sbjct: 173 ARVAL 177



 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 10/78 (12%)

Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-----APAQ 202
           +     + + K +LQ +A  +    P+Y+ T   GP H P F   V I G         Q
Sbjct: 198 ISLPGIQINHKLQLQIYAQKRGKQLPKYRRTQE-GPSHAPLFKSTVTIDGQTFESPQYCQ 256

Query: 203 GMDCSKRAAEQVAAAEVL 220
               + + +E  AA   L
Sbjct: 257 ----TIKESENAAANLAL 270



 Score = 55.1 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 7/72 (9%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-----AQGMDCSKRAA 211
            K +L +    +    P+Y      GP H  RF   V ++G          G   +K  A
Sbjct: 28  FKAQLNQLCQQRRWPAPDYA-HRSEGPAHLLRFRATVAVNGEVYHSPDDGGGSGTAK-EA 85

Query: 212 EQVAAAEVLKRE 223
             +AA    +R 
Sbjct: 86  HNLAAKAAFERL 97


>gi|158186644|ref|NP_001103377.1| staufen RNA binding protein homolog 1 isoform 2 [Rattus norvegicus]
 gi|9755163|gb|AAF98177.1|AF290989_1 staufen isoform Stau-I6 [Rattus norvegicus]
 gi|74353677|gb|AAI01859.1| Stau1 protein [Rattus norvegicus]
 gi|149042853|gb|EDL96427.1| staufen RNA binding protein homolog 1 (Drosophila) [Rattus
           norvegicus]
          Length = 489

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G   A+G   +K+ A++ 
Sbjct: 197 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGAGTNKKVAKRN 255

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 256 AAENMLEILG 265



 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G    +G   SK+ +++ AA  VL++
Sbjct: 103 EIALKRNLP-VNFEVARESGPPHMKNFVTRVSV-GEFVGEGEGKSKKISKKNAARAVLEQ 160

Query: 223 E 223
            
Sbjct: 161 L 161


>gi|51859122|gb|AAH81755.1| Stau1 protein [Rattus norvegicus]
          Length = 554

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    PEY +    G      F + V++ G   A+G   +K+ A++ 
Sbjct: 262 MNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKV-GHHTAEGAGTNKKVAKRN 320

Query: 215 AAAEVLKREG 224
           AA  +L+  G
Sbjct: 321 AAENMLEILG 330



 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E A  +      ++V   SGP H   F   V + G    +G   SK+ +++ AA  VL++
Sbjct: 168 EIALKRNLP-VNFEVARESGPPHMKNFVTRVSV-GEFVGEGEGKSKKISKKNAARAVLEQ 225

Query: 223 E 223
            
Sbjct: 226 L 226


>gi|149751348|ref|XP_001497601.1| PREDICTED: adenosine deaminase, RNA-specific [Equus caballus]
          Length = 1145

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  T L E  H K G + E+++  R GP HDP+F   V +           SK+ A+Q+
Sbjct: 558 KNPVTTLLECVH-KLGSSCEFRLLSREGPAHDPKFQYCVAMGTHTFPTASAPSKKVAKQM 616

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 617 AAEEAMKAL 625



 Score = 61.6 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E+A      T E+ +  +SGP H+PRF   V ISG         SK+ A+Q 
Sbjct: 447 KNPISGLLEYAQ-FASQTCEFNLIEQSGPPHEPRFKFQVVISGREFPPAEAGSKKVAKQD 505

Query: 215 AAAEVL 220
           AA + +
Sbjct: 506 AAMKAM 511



 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+  +Q AA   L
Sbjct: 676 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 734

Query: 221 K 221
           +
Sbjct: 735 R 735


>gi|301608714|ref|XP_002933926.1| PREDICTED: interferon-induced, double-stranded RNA-activated
           protein kinase [Xenopus (Silurana) tropicalis]
          Length = 534

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           D +  L ++   K     E+++  + G  HDP FTV + I      +G   SK+AAE++A
Sbjct: 3   DPQVVLNKFCARKNLQY-EFRLISKEGSPHDPLFTVHLFIKNEMFGEGQGKSKKAAEKIA 61

Query: 216 AA---EVLKR 222
           A      L+ 
Sbjct: 62  ARIGLAALQN 71



 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    L E    K      ++   R GPDH+P+F  V E++     +G   +K+ A + A
Sbjct: 117 NYIGILNELCQKKSWSR-NFRDVDRYGPDHEPKFYCVAEVNKREYPEGWGKNKKQARKKA 175

Query: 216 AAEVLK 221
           A   L+
Sbjct: 176 AFLALR 181


>gi|242766587|ref|XP_002341200.1| RNAse III, putative [Talaromyces stipitatus ATCC 10500]
 gi|218724396|gb|EED23813.1| RNAse III, putative [Talaromyces stipitatus ATCC 10500]
          Length = 142

 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 56/128 (43%), Gaps = 14/128 (10%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
              +++  GY F ++SLL +A+  +   +  ++  + L   G  IL + I         +
Sbjct: 12  VQAIQEITGYTFNDQSLLSEAVEAADFRN--KDGNKDLALPGGAILKVFIIMEGRQRHQN 69

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
                      ++ S    ++ A EL L  +I+ ++  + ++ S      A  +E++I A
Sbjct: 70  ---------RKTIASNANLAKKAVELGLKDYIQ-NNPAQGNLISQGP--LATAMEAIIGA 117

Query: 126 LYLDGGIE 133
           +Y+D   +
Sbjct: 118 IYIDSDRD 125


>gi|221361575|emb|CAX18336.1| dicel-like 1 [Nicotiana benthamiana]
          Length = 79

 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 29/68 (42%)

Query: 46  LGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK 105
           +GD +L  LI+  LF  +     G L+    + V+ E  ++VA +  L   +R  S   +
Sbjct: 1   VGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHGLHLHLRHGSSALE 60

Query: 106 DVCSFMTS 113
                  S
Sbjct: 61  KQIRDFVS 68


>gi|159123457|gb|EDP48576.1| hypothetical protein AFUB_080110 [Aspergillus fumigatus A1163]
          Length = 620

 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 62/165 (37%), Gaps = 17/165 (10%)

Query: 1   MSALRYSTL-EKRIGYAFANRSLLEKALTHSSISHSYQES------YERLEFLGDRILGL 53
           M+  + +   + R+GY F N ++L  ALT  +      E         RL  LG+ ++  
Sbjct: 1   MATTKDARFVQDRLGYRFKNEAILRLALT--AAGKGGAEDGANKRGNSRLAHLGNFLMQF 58

Query: 54  LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
           L++       D     + S       SA+ C++VA + +L   ++          S    
Sbjct: 59  LLA--WIGFGDDRTRADTSTLATRFNSADHCAKVAEKAELDRCLKY----DMRSGSRSAV 112

Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK 158
           +    V +++AA+++D   +     +             F  D +
Sbjct: 113 VLRKAVNAIMAAIFVDS--QDIHQVLMAVTNLGLFGHDDFGVDPR 155


>gi|260785891|ref|XP_002587993.1| hypothetical protein BRAFLDRAFT_125391 [Branchiostoma floridae]
 gi|229273149|gb|EEN44004.1| hypothetical protein BRAFLDRAFT_125391 [Branchiostoma floridae]
          Length = 376

 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 158 KTE--LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           KT   L         + P+YK+   +GP H   FT+ + ++          S + A+  A
Sbjct: 74  KTPMCLINELARYNKIQPQYKLITETGPAHQKTFTISLTLNDKTW-SAEGSSLKKAQHAA 132

Query: 216 AAEVL 220
           A++ L
Sbjct: 133 ASKAL 137



 Score = 59.3 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
              K  ++  ++V   SGP H   F    ++     A+G    K+ +++ AA +VL++  
Sbjct: 290 IARKRNMSVSFEVVKESGPPHMKTFVTSCKVGDFV-AEGEGNGKKVSKKRAAQKVLEQLK 348

Query: 225 IW 226
           + 
Sbjct: 349 VL 350



 Score = 40.1 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             F V + I       G   +++ A   AAA+ LK
Sbjct: 217 KTFYVSLTIGNRE-FIGEGRTRQQARHNAAAKALK 250


>gi|50294528|ref|XP_449675.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49528989|emb|CAG62651.1| unnamed protein product [Candida glabrata]
          Length = 358

 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 66/220 (30%), Gaps = 36/220 (16%)

Query: 39  SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLA---- 94
               L   G  +L   ++  L   +       L+   +S +S    + + +   +     
Sbjct: 118 DNHGLNIFGKNLLTYHVTQYLVKRYPRLPVVVLNAAVDSYLSQRVLASIGKSWGIESEDS 177

Query: 95  ----SF-------IRVSS--------------DLRKDVCSFMTSIQADVVESLIAALYLD 129
                +       I +                 L         +  A  V S+IAAL+  
Sbjct: 178 PVVNRYLANEPYEITLGKLRFFNNTLKREDGLQLITSKNFSEEAAYALAVRSIIAALWAS 237

Query: 130 ----GGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGP 183
                  + A  F+  +   R L   K  +  +   EL      +    P  K+   SG 
Sbjct: 238 TQNTAKPDSAIHFIKDHILSRKLDVTKIFQFENPTRELAVLCRRENLDLPVSKLIAESGR 297

Query: 184 -DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
               P F V V        +G   S + A+  AA++ L +
Sbjct: 298 LSKAPVFIVGVFSGEEKLGEGYGSSLKEAKARAASDALLK 337


>gi|224130800|ref|XP_002328379.1| predicted protein [Populus trichocarpa]
 gi|222838094|gb|EEE76459.1| predicted protein [Populus trichocarpa]
          Length = 159

 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  LQE AH      P Y    RSGP H P F+  VE++G++       +K+ A++ AA
Sbjct: 88  YKNLLQETAHRAGLKLPVYTTI-RSGPGHVPVFSCNVELAGMSFTGESARTKKQAQKNAA 146

Query: 217 AE---VLKR 222
                 LKR
Sbjct: 147 MAAWSALKR 155



 Score = 59.7 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK-RAAEQVA 215
            K +LQE A       P Y    R GPDH PRF   V  +G         S  R AE  A
Sbjct: 2   YKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKSTVNFNGETFESPTFYSTLRLAEHAA 60

Query: 216 AAEVLK 221
           A   L 
Sbjct: 61  AEVALN 66


>gi|195454350|ref|XP_002074202.1| GK12745 [Drosophila willistoni]
 gi|194170287|gb|EDW85188.1| GK12745 [Drosophila willistoni]
          Length = 845

 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 1/82 (1%)

Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205
            A+      +     L E         P+Y +   +GP H   F   VEI+G        
Sbjct: 761 PAVPQNNQDKHPVCVLNELTSKNKWTPPQYVLQQNTGPAHMRTFLFSVEINGQKYTPSNG 820

Query: 206 -CSKRAAEQVAAAEVLKREGIW 226
             SK+ A+  AA   L+  G+ 
Sbjct: 821 CNSKKEAKLNAAKLCLQALGLL 842


>gi|147906536|ref|NP_001091256.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Xenopus
           laevis]
 gi|121308150|emb|CAM07152.1| double stranded RNA activated protein kinase 1 [Xenopus laevis]
          Length = 578

 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           + K +L  +         ++K    +GP HDPRFT  V ++G    +G D  K+ AE +A
Sbjct: 5   NVKGQLISFCTKNGLSY-QFKKVEATGPSHDPRFTFQVFVNGEKLGEGQDKKKKGAECMA 63

Query: 216 AAEVL 220
           A   L
Sbjct: 64  AKMAL 68



 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 20/65 (30%), Gaps = 2/65 (3%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    L E             +  R G  H P F     I      +    +K+ A++ A
Sbjct: 118 NYVGILHELCQKH--TLIVTFLDERHGQPHIPEFFCKAVIGKEEFPKAKGKNKKEAKRKA 175

Query: 216 AAEVL 220
           A   L
Sbjct: 176 AHLAL 180


>gi|72009988|ref|XP_781832.1| PREDICTED: similar to adenosine deaminase [Strongylocentrotus
           purpuratus]
 gi|115934907|ref|XP_001189241.1| PREDICTED: similar to adenosine deaminase [Strongylocentrotus
           purpuratus]
          Length = 696

 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +      +K   ++GP H P F V VE++     +G   SK+ A   AA
Sbjct: 83  PKNALMQL--NEIKPGLVFKTQSQTGPVHAPTFVVSVEVNDQ-LFEGTGRSKKTARMHAA 139

Query: 217 AEVLK 221
              LK
Sbjct: 140 ELALK 144



 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 6/72 (8%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
           K     ++    L E          +Y++   SG  H   FT+ + I G    QG   +K
Sbjct: 227 KEQPSGKNPVMILNEL-----KPGQKYEMQEESGQSHSKNFTMSLTIDGKN-FQGTGRNK 280

Query: 209 RAAEQVAAAEVL 220
           + A+Q AA   L
Sbjct: 281 KLAKQRAAQAAL 292


>gi|270003897|gb|EFA00345.1| hypothetical protein TcasGA2_TC003184 [Tribolium castaneum]
          Length = 1222

 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 5/74 (6%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQV 214
           D K+ L ++        P+++V   +GP H  RF   V I G +    G   +K+ A+  
Sbjct: 3   DIKSFLHQFCQKTKKEQPQFEV-RPTGPKHRQRFLCEVRIDGYSYVGAGNSTNKKDAQSN 61

Query: 215 AAAEV---LKREGI 225
           AA +    L REGI
Sbjct: 62  AARDFVSYLVREGI 75



 Score = 41.6 bits (97), Expect = 0.084,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGM--DCSKRA 210
           +AK++L ++  +   +  +YK T   GPDH   F   +            G     +K+ 
Sbjct: 160 NAKSKLHQFMQSN-KIHADYKYTQV-GPDHSRTFVAEMSFYVKQLGRTITGRDSGSNKQT 217

Query: 211 AEQVAAAEVLKRE 223
           A +  A  ++++ 
Sbjct: 218 ASKSCALSIIRQL 230


>gi|91078338|ref|XP_973454.1| PREDICTED: similar to maleless protein [Tribolium castaneum]
          Length = 1220

 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 5/74 (6%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQV 214
           D K+ L ++        P+++V   +GP H  RF   V I G +    G   +K+ A+  
Sbjct: 3   DIKSFLHQFCQKTKKEQPQFEV-RPTGPKHRQRFLCEVRIDGYSYVGAGNSTNKKDAQSN 61

Query: 215 AAAEV---LKREGI 225
           AA +    L REGI
Sbjct: 62  AARDFVSYLVREGI 75



 Score = 41.6 bits (97), Expect = 0.084,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGM--DCSKRA 210
           +AK++L ++  +   +  +YK T   GPDH   F   +            G     +K+ 
Sbjct: 160 NAKSKLHQFMQSN-KIHADYKYTQV-GPDHSRTFVAEMSFYVKQLGRTITGRDSGSNKQT 217

Query: 211 AEQVAAAEVLKRE 223
           A +  A  ++++ 
Sbjct: 218 ASKSCALSIIRQL 230


>gi|254582945|ref|XP_002499204.1| ZYRO0E06490p [Zygosaccharomyces rouxii]
 gi|238942778|emb|CAR30949.1| ZYRO0E06490p [Zygosaccharomyces rouxii]
          Length = 380

 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 68/219 (31%), Gaps = 35/219 (15%)

Query: 39  SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELD------ 92
               L   G  +L   ++  L   +       L+   ++ +  +  + V +         
Sbjct: 141 DNHGLNIFGKNLLTYHVTRKLMTKYPRLPTVILNAAVDAYICEDVLAGVGKSWGVETEKT 200

Query: 93  --LASFIR-------VSS-----------DLRKDVCSFM---TSIQADVVESLIAALY-- 127
             L  +++       +             D  + + S      S  +  + S+I AL+  
Sbjct: 201 PVLERYLKEEPIQITLGKLRFYNNSLNQEDGIESISSLNFSEKSAYSLAIRSIIGALWAC 260

Query: 128 -LDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
             +   + A  F+D +   R L   K  +      EL      +    P  ++   SG  
Sbjct: 261 TQETNPQYAFQFIDDHILSRKLDISKMFQFEQPTRELAALCRREGLQKPVSRLLAESGRH 320

Query: 185 -HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              P F V V        +G   S +  +  AA + L +
Sbjct: 321 SKAPVFIVGVFSGDEKLGEGFGSSLKEGKARAATDALMK 359


>gi|321468306|gb|EFX79291.1| hypothetical protein DAPPUDRAFT_24493 [Daphnia pulex]
          Length = 254

 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           LQE   +     P Y +   +G  H+  F +   +       G+  SK+ A++ AA  + 
Sbjct: 93  LQELCISHRWAPPSYVLEGENGLPHEREFVITCVVENHQE-IGVGKSKKLAKRQAAYRMQ 151

Query: 221 KRE 223
            + 
Sbjct: 152 MKL 154



 Score = 45.1 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             + LQE  + K G+ P+Y +    G  H+P F   V + G   A G   S
Sbjct: 5   PVSLLQE-LYVKKGINPKYDLIQIEGAIHEPTFKYRVSV-GELVAMGSGQS 53


>gi|198437680|ref|XP_002131410.1| PREDICTED: similar to mitochondrial ribosomal protein L44 [Ciona
           intestinalis]
          Length = 340

 Score = 63.9 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 71/225 (31%), Gaps = 15/225 (6%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES--YERLEFLGDRILGLLISTLLFNH 62
             +  + R+     N  LL  ALT    +    E   Y +L   G + +   +S  +   
Sbjct: 84  ELTAFKNRLDIEVPN-ELLVSALTEPLFNEPSTEDTGYSKLLKDGSKFVEEFVSHYVKEA 142

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F        S   + L+     + +A  L     +++              + A+ + + 
Sbjct: 143 FPFLTSEGRSSICDFLLLDSNIAYLALNLGYNDLLQL------TGLRSSEKVLAESLVAS 196

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKV 177
           I A+ L  G   A  F+  +   + +         K       L E         P+ ++
Sbjct: 197 IEAINLSEGPVAAAKFILNFLVPQLVGKDIIDDIWKPSNPMALLTESFKISGKPAPQARL 256

Query: 178 TFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             + G     P + V +       A+    S   AE  AA   LK
Sbjct: 257 IQQCGVNTVTPIYYVGLFSGKDLIAKSGAESIVLAETDAAKLALK 301


>gi|149050635|gb|EDM02808.1| rCG61784 [Rattus norvegicus]
          Length = 513

 Score = 63.9 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           +L +++     V   YK    +GP HD RFT  V I      +G   SK+ A+  AA   
Sbjct: 12  KLNKYSQIH-KVKIIYKEISVTGPPHDRRFTFQVIIEEREFPEGEGRSKQEAKNNAAKLA 70

Query: 220 LK 221
           ++
Sbjct: 71  VE 72



 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 16/36 (44%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           RF    +I       G   +K+ A+Q+AA    ++ 
Sbjct: 125 RFICKCKIGQTTYGTGFGANKKEAKQLAAKNAYQKL 160


>gi|156371296|ref|XP_001628700.1| predicted protein [Nematostella vectensis]
 gi|156215684|gb|EDO36637.1| predicted protein [Nematostella vectensis]
          Length = 423

 Score = 63.9 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             + + E A A     PEY V   +GP H   F V +++  +   +GM  + + A+  AA
Sbjct: 6   PISLMNELAKANNL-NPEYNVIEETGPAHKKTFKVQLKLGDIGIWEGMANNIKLAKHKAA 64

Query: 217 AEVLKREGI 225
            + L+  G+
Sbjct: 65  EKGLENCGL 73



 Score = 60.9 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           + L +    +    P Y +    G      FT+ V++ G   A G+  +K+ A++ AA  
Sbjct: 344 SILGQILQRRHDPAPVYSLVEERGHMMKKEFTLRVKV-GSHEALGVGPNKKTAKKNAAEA 402

Query: 219 VLKREG 224
           +L+  G
Sbjct: 403 MLQLMG 408



 Score = 41.2 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           GP H  +F +   + G    +G    K+ A++ AA  +L
Sbjct: 263 GPAHMKKFKIKATV-GPYMTEGEGNRKKDAKKEAAVRML 300


>gi|302819687|ref|XP_002991513.1| hypothetical protein SELMODRAFT_429800 [Selaginella moellendorffii]
 gi|300140715|gb|EFJ07435.1| hypothetical protein SELMODRAFT_429800 [Selaginella moellendorffii]
          Length = 850

 Score = 63.9 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 71/222 (31%), Gaps = 57/222 (25%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
              +LE ++ Y F NRSLL +A+TH+S  +     Y+     G   L   I   + N   
Sbjct: 648 SLESLEHKLQYKFQNRSLLVEAITHASQPNCLL-CYQH----GSVELDCEIRKFVQN--- 699

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
                         V  +  +    +L                      +  D++ES+  
Sbjct: 700 --------------VKEKPDASCFDDLS------------------SPKVLGDLLESITG 727

Query: 125 ALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+++D   ++   +  V        +     R      L E    K      ++    + 
Sbjct: 728 AIFVDTNFDLEKLWRVVLPLLSP-LVTPATLRFHPVRILMELCARKGMKVSFFRTEATTT 786

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCS----KRAAEQVAAAEVL 220
                   V V     +  +    S    +++A+  AA ++L
Sbjct: 787 -------EVRVTFGEESLVE---TSQEKPRKSAKIDAALKML 818



 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAET 83
           +A+T  S     + SYE LE LGD  L  +++  LF  +D   EG+LS R N+  +  +
Sbjct: 573 EAIT--SKKCHEEFSYESLELLGDSFLKYVVTQKLFLVYDKKHEGQLSARRNTYATKNS 629


>gi|9506993|ref|NP_062208.1| interferon-induced, double-stranded RNA-activated protein kinase
           [Rattus norvegicus]
 gi|81910551|sp|Q63184|E2AK2_RAT RecName: Full=Interferon-induced, double-stranded RNA-activated
           protein kinase; AltName: Full=Eukaryotic translation
           initiation factor 2-alpha kinase 2; Short=eIF-2A protein
           kinase 2; AltName: Full=Interferon-inducible
           RNA-dependent protein kinase; AltName: Full=Protein
           kinase RNA-activated; Short=PKR
 gi|468373|gb|AAA61926.1| RNA-dependent initiation factor-2 kinase [Rattus norvegicus]
          Length = 513

 Score = 63.9 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           +L +++     V   YK    +GP HD RFT  V I      +G   SK+ A+  AA   
Sbjct: 12  KLNKYSQIH-KVKIIYKEISVTGPPHDRRFTFQVIIEEREFPEGEGRSKQEAKNNAAKLA 70

Query: 220 LK 221
           ++
Sbjct: 71  VE 72



 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 16/36 (44%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           RF    +I       G   +K+ A+Q+AA    ++ 
Sbjct: 125 RFICKCKIGQTTYGTGFGANKKEAKQLAAKNAYQKL 160


>gi|291397874|ref|XP_002715382.1| PREDICTED: adenosine deaminase, RNA-specific [Oryctolagus
           cuniculus]
          Length = 1150

 Score = 63.9 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   T L E  H K G + E+++  + GP HDP+F   V +           SK+ A+Q+
Sbjct: 560 KSPVTTLLECVH-KLGSSCEFRLLSKEGPAHDPKFQYCVAVGSQTFPTASAPSKKVAKQM 618

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 619 AAEEAMKAL 627



 Score = 61.6 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E+A      T E+ +  +SGP H+PRF   V ISG         SK+ A+Q 
Sbjct: 449 KNPISGLLEYAQ-FASQTCEFNLIEQSGPPHEPRFKFQVVISGREFPPAEAGSKKVAKQD 507

Query: 215 AAAEVL 220
           AA + +
Sbjct: 508 AAMKAM 513



 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+  +Q AA   L
Sbjct: 678 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 736

Query: 221 K 221
           +
Sbjct: 737 R 737


>gi|169858496|ref|XP_001835893.1| hypothetical protein CC1G_02981 [Coprinopsis cinerea okayama7#130]
 gi|116503063|gb|EAU85958.1| hypothetical protein CC1G_02981 [Coprinopsis cinerea okayama7#130]
          Length = 299

 Score = 63.9 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 51/136 (37%), Gaps = 10/136 (7%)

Query: 19  NRSLLEKALTHSSIS------HSYQESYERLEFLGDRILGLLI-STLLFNHFDSAKEGEL 71
           +  LL    TH S+       +      +RL  LG  +L +++ +        S    +L
Sbjct: 13  DVELLLDVFTHKSLRMTGAPLNEDYGDTDRLAELGAYVLQMVVATHWFHAKNPSLPADQL 72

Query: 72  SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL--D 129
           S R    +S  T         L + +R++    +   +  T ++  V E+ + A+Y    
Sbjct: 73  SARIKESLSDTTVDTWMNAYGLKTKLRIAPSEMERSMNSSTEMRK-VFETYVGAVYFRNR 131

Query: 130 GGIEVAGTFVDKYWKQ 145
            G++    ++ +    
Sbjct: 132 NGLKEIQQWISRLIDP 147



 Score = 62.8 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           A+ GV   Y    +SGP H P + V   ++G    +G   S++ A++ AA +     G
Sbjct: 240 AQNGVHVTYPA-EQSGPPHAPLWHVRCCLNGKEYGRGTGRSQKIAKEEAARQAWTAMG 296


>gi|320167293|gb|EFW44192.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 326

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 68/205 (33%), Gaps = 20/205 (9%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           L++AL     +  +Q   +R+  LG      L +  +F  F       L     S++ A 
Sbjct: 104 LKRALM---SNDKWQSPSQRMSALGQGYFHALFAEHVFQRFPRLPGPALQSITESVMDAP 160

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
           + SQ AR   L  F            +    +      ++IAA+    GI      VD  
Sbjct: 161 SISQYARAFGLHQF------------AQSDLLLRSSFFAVIAAIVEVKGIAGVRQIVDDV 208

Query: 143 WKQRALKSGK----FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISG 197
            ++    +         + +  LQ            +K+   +G     P F V      
Sbjct: 209 AQKEFAAARPADSILITNPQRLLQSCLEDANQEPLTFKLHKEAGRTTATPTFVVGAYSGS 268

Query: 198 LAPAQGMDCSKRAAEQVAAAEVLKR 222
              A+G   S   A++ A+   L +
Sbjct: 269 QLLAEGTAASMSKAKREASRNSLTK 293


>gi|308489344|ref|XP_003106865.1| hypothetical protein CRE_17085 [Caenorhabditis remanei]
 gi|308252753|gb|EFO96705.1| hypothetical protein CRE_17085 [Caenorhabditis remanei]
          Length = 725

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
            + +  + L +   +K    P +++    G      F + V+       +G   +KR A+
Sbjct: 402 HQINPVSRLIQVIQSKNQEHPTFELVAEHGASKYKEFVIRVKCGDEMR-EGRGPNKRLAK 460

Query: 213 QVAAAEVLKREG 224
           + AA  +L+  G
Sbjct: 461 RAAAEAMLETIG 472



 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 23/47 (48%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           Y +   SGP H   FTV + ++     +G   S + A+Q +A   LK
Sbjct: 84  YDLQDESGPAHKKLFTVKLVLTPEESFEGSGPSIKRAQQASAEAALK 130



 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISG-----LAPAQGMDCSKRAAEQVAAAEVLK 221
             +   ++V    GP HD ++ V            A   G    K+ A+Q A A+++K
Sbjct: 296 LKLNVVFEVLKEEGPPHDRQYVVRCAFVTSAQVVKAEGIGRGKKKKIAQQEACAQLIK 353



 Score = 37.4 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           V+V I G   A G+  +   A+Q AAA+ L
Sbjct: 221 VMVHIDGKPVATGVGETYPLAKQDAAAKAL 250


>gi|332256664|ref|XP_003277436.1| PREDICTED: double-stranded RNA-specific editase 1 isoform 5
           [Nomascus leucogenys]
          Length = 674

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 79  PKNALMQL--NEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135

Query: 217 AEVLK 221
            + L+
Sbjct: 136 EKALR 140



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +     +Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293


>gi|332256660|ref|XP_003277434.1| PREDICTED: double-stranded RNA-specific editase 1 isoform 3
           [Nomascus leucogenys]
          Length = 741

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 79  PKNALMQL--NEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135

Query: 217 AEVLK 221
            + L+
Sbjct: 136 EKALR 140



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +     +Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293


>gi|332256658|ref|XP_003277433.1| PREDICTED: double-stranded RNA-specific editase 1 isoform 2
           [Nomascus leucogenys]
          Length = 729

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 107 PKNALMQL--NEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 163

Query: 217 AEVLK 221
            + L+
Sbjct: 164 EKALR 168



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +     +Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 270 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 321


>gi|311270262|ref|XP_003132836.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-specific
           editase 1-like [Sus scrofa]
          Length = 816

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 241 PKNALMQL--NEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 297

Query: 217 AEVLK 221
            + L+
Sbjct: 298 EKALR 302


>gi|297708140|ref|XP_002830837.1| PREDICTED: double-stranded RNA-specific editase 1-like isoform 2
           [Pongo abelii]
          Length = 674

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 79  PKNALMQL--NEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135

Query: 217 AEVLK 221
            + L+
Sbjct: 136 EKALR 140



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +     +Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293


>gi|297708138|ref|XP_002830836.1| PREDICTED: double-stranded RNA-specific editase 1-like isoform 1
           [Pongo abelii]
          Length = 740

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 118 PKNALMQL--NEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 174

Query: 217 AEVLK 221
            + L+
Sbjct: 175 EKALR 179



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +     +Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 281 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 332


>gi|296232315|ref|XP_002761540.1| PREDICTED: double-stranded RNA-specific editase 1 [Callithrix
           jacchus]
          Length = 740

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 118 PKNALMQL--NEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 174

Query: 217 AEVLK 221
            + L+
Sbjct: 175 EKALR 179



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +     +Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 281 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 332


>gi|239985464|ref|NP_001155267.1| RNA-specific adenosine deaminase B1 isoform 4 [Pan troglodytes]
          Length = 674

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 79  PKNALMQL--NEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135

Query: 217 AEVLK 221
            + L+
Sbjct: 136 EKALR 140



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +     +Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293


>gi|239985462|ref|NP_001155266.1| RNA-specific adenosine deaminase B1 isoform 2 [Pan troglodytes]
          Length = 741

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 79  PKNALMQL--NEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135

Query: 217 AEVLK 221
            + L+
Sbjct: 136 EKALR 140



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +     +Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293


>gi|239985460|ref|NP_001155265.1| RNA-specific adenosine deaminase B1 isoform 3 [Pan troglodytes]
          Length = 714

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 79  PKNALMQL--NEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135

Query: 217 AEVLK 221
            + L+
Sbjct: 136 EKALR 140



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +     +Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293


>gi|239985458|ref|NP_001122104.2| RNA-specific adenosine deaminase B1 isoform 1 [Pan troglodytes]
          Length = 701

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 79  PKNALMQL--NEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135

Query: 217 AEVLK 221
            + L+
Sbjct: 136 EKALR 140



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +     +Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293


>gi|119629763|gb|EAX09358.1| adenosine deaminase, RNA-specific, B1 (RED1 homolog rat), isoform
           CRA_b [Homo sapiens]
          Length = 700

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 79  PKNALMQL--NEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135

Query: 217 AEVLK 221
            + L+
Sbjct: 136 EKALR 140



 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 1/45 (2%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           +     +Y     SG  H   F + V + G    +G   +K+ A+
Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAK 285


>gi|41351285|gb|AAH65545.1| Adenosine deaminase, RNA-specific, B1 (RED1 homolog rat) [Homo
           sapiens]
          Length = 701

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 79  PKNALMQL--NEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135

Query: 217 AEVLK 221
            + L+
Sbjct: 136 EKALR 140



 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 1/45 (2%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           +     +Y     SG  H   F + V + G    +G   +K+ A+
Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAK 285


>gi|21954729|gb|AAM83100.1|AF525422_1 adenosine deaminase ADAR2 [Homo sapiens]
 gi|23266659|gb|AAN10291.1| adenosine deaminase [Homo sapiens]
          Length = 729

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 107 PKNALMQL--NEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 163

Query: 217 AEVLK 221
            + L+
Sbjct: 164 EKALR 168



 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 1/45 (2%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           +     +Y     SG  H   F + V + G    +G   +K+ A+
Sbjct: 270 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAK 313


>gi|22506829|gb|AAM97654.1| adenosine deaminase ADAR2 variant [Homo sapiens]
          Length = 701

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 79  PKNALMQL--NEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135

Query: 217 AEVLK 221
            + L+
Sbjct: 136 EKALR 140



 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 1/45 (2%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           +     +Y     SG  H   F + V + G    +G   +K+ A+
Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAK 285


>gi|2114493|gb|AAB58300.1| RNA editase [Homo sapiens]
          Length = 741

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 79  PKNALMQL--NEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135

Query: 217 AEVLK 221
            + L+
Sbjct: 136 EKALR 140



 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 1/45 (2%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           +     +Y     SG  H   F + V + G    +G   +K+ A+
Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAK 285


>gi|119629762|gb|EAX09357.1| adenosine deaminase, RNA-specific, B1 (RED1 homolog rat), isoform
           CRA_a [Homo sapiens]
          Length = 729

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 107 PKNALMQL--NEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 163

Query: 217 AEVLK 221
            + L+
Sbjct: 164 EKALR 168



 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 1/45 (2%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           +     +Y     SG  H   F + V + G    +G   +K+ A+
Sbjct: 270 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAK 313


>gi|7669479|ref|NP_056649.1| double-stranded RNA-specific editase 1 isoform 3 [Homo sapiens]
 gi|2039302|gb|AAC51242.1| dsRNA adenosine deaminase DRADA2c [Homo sapiens]
 gi|119629766|gb|EAX09361.1| adenosine deaminase, RNA-specific, B1 (RED1 homolog rat), isoform
           CRA_e [Homo sapiens]
          Length = 714

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 79  PKNALMQL--NEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135

Query: 217 AEVLK 221
            + L+
Sbjct: 136 EKALR 140



 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 1/45 (2%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           +     +Y     SG  H   F + V + G    +G   +K+ A+
Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAK 285


>gi|237681091|ref|NP_001153702.1| double-stranded RNA-specific editase 1 isoform 7 [Homo sapiens]
 gi|71274097|dbj|BAE16329.1| adenosine deaminase acting on RNA type2d [Homo sapiens]
          Length = 674

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 79  PKNALMQL--NEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135

Query: 217 AEVLK 221
            + L+
Sbjct: 136 EKALR 140



 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 1/45 (2%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           +     +Y     SG  H   F + V + G    +G   +K+ A+
Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAK 285


>gi|4379098|emb|CAB09392.1| RNA editing deaminase 1 [Homo sapiens]
          Length = 699

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 79  PKNALMQL--NEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135

Query: 217 AEVLK 221
            + L+
Sbjct: 136 EKALR 140



 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 1/45 (2%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           +     +Y     SG  H   F + V + G    +G   +K+ A+
Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAK 285


>gi|7669477|ref|NP_056648.1| double-stranded RNA-specific editase 1 isoform 2 [Homo sapiens]
 gi|2829669|sp|P78563|RED1_HUMAN RecName: Full=Double-stranded RNA-specific editase 1; AltName:
           Full=RNA-editing deaminase 1; AltName: Full=RNA-editing
           enzyme 1; AltName: Full=dsRNA adenosine deaminase
 gi|1707502|emb|CAA67611.1| double-stranded RNA-specific editase [Homo sapiens]
 gi|1766056|gb|AAB61687.1| double stranded RNA-specific editase 1 hRED1-L [Homo sapiens]
 gi|2039300|gb|AAC51241.1| dsRNA adenosine deaminase DRADA2b [Homo sapiens]
 gi|7717441|emb|CAB90493.1| human dsRNA adenosine deaminase DRADA2b, EC 3.5 [Homo sapiens]
 gi|119629765|gb|EAX09360.1| adenosine deaminase, RNA-specific, B1 (RED1 homolog rat), isoform
           CRA_d [Homo sapiens]
          Length = 741

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 79  PKNALMQL--NEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135

Query: 217 AEVLK 221
            + L+
Sbjct: 136 EKALR 140



 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 1/45 (2%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           +     +Y     SG  H   F + V + G    +G   +K+ A+
Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAK 285


>gi|4501919|ref|NP_001103.1| double-stranded RNA-specific editase 1 isoform 1 [Homo sapiens]
 gi|1707504|emb|CAA67762.1| double-stranded RNA-specific editase [Homo sapiens]
 gi|1766054|gb|AAB61686.1| double stranded RNA-specific editase 1 hRED1-S [Homo sapiens]
 gi|2039298|gb|AAC51240.1| dsRNA adenosine deaminase DRADA2a [Homo sapiens]
 gi|71274091|dbj|BAE16326.1| adenosine deaminase acting on RNA type2a [Homo sapiens]
 gi|71274093|dbj|BAE16327.1| adenosine deaminase acting on RNA type2a [Homo sapiens]
 gi|71274095|dbj|BAE16328.1| adenosine deaminase acting on RNA type2a [Homo sapiens]
 gi|119629764|gb|EAX09359.1| adenosine deaminase, RNA-specific, B1 (RED1 homolog rat), isoform
           CRA_c [Homo sapiens]
          Length = 701

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 79  PKNALMQL--NEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135

Query: 217 AEVLK 221
            + L+
Sbjct: 136 EKALR 140



 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 1/45 (2%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           +     +Y     SG  H   F + V + G    +G   +K+ A+
Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAK 285


>gi|332256656|ref|XP_003277432.1| PREDICTED: double-stranded RNA-specific editase 1 isoform 1
           [Nomascus leucogenys]
 gi|332256662|ref|XP_003277435.1| PREDICTED: double-stranded RNA-specific editase 1 isoform 4
           [Nomascus leucogenys]
          Length = 701

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 79  PKNALMQL--NEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135

Query: 217 AEVLK 221
            + L+
Sbjct: 136 EKALR 140



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +     +Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293


>gi|328865213|gb|EGG13599.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 760

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           AK  LQE+        P Y VT  +  DH  +F   V++ G         +K+ AE+ AA
Sbjct: 7   AKNSLQEYCQKNKLTLPTYDVT-TTCQDHAKKFMCKVKVQGHQYNSLWMDNKKDAEKHAA 65

Query: 217 AEVL 220
              L
Sbjct: 66  TVAL 69


>gi|297287382|ref|XP_002803150.1| PREDICTED: double-stranded RNA-specific editase 1-like isoform 2
           [Macaca mulatta]
          Length = 740

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 118 PKNALMQL--NEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 174

Query: 217 AEVLK 221
            + L+
Sbjct: 175 EKALR 179



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +     +Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 281 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 332


>gi|15807272|ref|NP_296002.1| hypothetical protein DR_2281 [Deinococcus radiodurans R1]
 gi|6460094|gb|AAF11833.1|AE002060_12 hypothetical protein DR_2281 [Deinococcus radiodurans R1]
          Length = 164

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           +  +AK +L     +    TP ++     GP H+  F V V  SG   A     +K+ AE
Sbjct: 24  YPMNAKGDLIARLVSLGLGTPTFEA-EAHGPAHERTFHVKVWSSGQVIATAEGRTKKDAE 82

Query: 213 QVAAAEVLKRE 223
           ++AA   L+  
Sbjct: 83  RLAAELALREL 93


>gi|297287384|ref|XP_001118216.2| PREDICTED: double-stranded RNA-specific editase 1-like isoform 1
           [Macaca mulatta]
          Length = 674

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 79  PKNALMQL--NEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135

Query: 217 AEVLK 221
            + L+
Sbjct: 136 EKALR 140



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +     +Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293


>gi|168043471|ref|XP_001774208.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
           patens]
 gi|162674476|gb|EDQ60984.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
           patens]
          Length = 577

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 6/69 (8%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAA 216
           K  LQE A       P Y  T RSGP H P FT  VE++      G    +K+ AE+ AA
Sbjct: 107 KNLLQETAQRAGVSLPVYSTT-RSGPGHLPVFTCTVELA-KMTFSGEAAKTKKQAEKNAA 164

Query: 217 AE---VLKR 222
                 LK+
Sbjct: 165 MAAWSALKQ 173



 Score = 61.2 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 26/69 (37%), Gaps = 8/69 (11%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK----RAAE 212
            K +LQE A       P Y    R GPDH PRF   V  +G         +     R AE
Sbjct: 20  YKNQLQELAQRSCINLPAYACI-REGPDHAPRFKATVSFNGEIFES---PNYCNTLRQAE 75

Query: 213 QVAAAEVLK 221
             AA   L 
Sbjct: 76  HAAAEVALN 84


>gi|327262381|ref|XP_003216003.1| PREDICTED: interferon-induced, double-stranded RNA-activated
           protein kinase-like [Anolis carolinensis]
          Length = 439

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 1/78 (1%)

Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205
            A        +  + L E+A     +  E+ +  + GPDH P F+   +I G     G  
Sbjct: 104 PAANITAVSTNYISLLNEYALKNKKI-VEFGLESKDGPDHKPVFSQSCKIDGEILGVGTG 162

Query: 206 CSKRAAEQVAAAEVLKRE 223
            +K  A+  AA    ++ 
Sbjct: 163 NNKNIAKFNAAKMAYEKL 180



 Score = 62.8 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           +L E+         EY      GP HD  FTV V+I  +   Q    +K+ A+  AA   
Sbjct: 14  KLHEYCQRNRLQL-EYLELDIRGPPHDRIFTVAVQIDKIQYRQCEGKTKKEAKAHAAVLA 72

Query: 220 LK 221
            +
Sbjct: 73  WE 74


>gi|7770277|gb|AAF69674.1| double-stranded RNA-specific editase [Tetraodon fluviatilis]
          Length = 1255

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 50/131 (38%), Gaps = 10/131 (7%)

Query: 102 DLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR------- 154
           +  +             +  +   L    G       V    + RA+  G  +       
Sbjct: 566 EEMQSGAGSKDKDNGASMNQVTGHLANTSGSAEVAMCVTGTPEGRAVAEGPPQPLSRSLP 625

Query: 155 --RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
             ++  + L +++    G   E+ +T ++GP HD RF   V++     ++    SK+AA 
Sbjct: 626 GGKNPVSVLMDYSQ-HSGNAIEFIMTGQAGPPHDTRFMYRVKVGENLFSEASAPSKKAAR 684

Query: 213 QVAAAEVLKRE 223
           Q+AA E +K  
Sbjct: 685 QLAAEEAVKEL 695



 Score = 52.0 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
              +A + L E+A A+     E ++  +SGP H+P+FT   ++ G         +K+  +
Sbjct: 751 LNNNAVSGLLEYAKARGFAA-EIRLVGQSGPPHEPKFTYQAKLGGRWFPPVCASNKKQGK 809

Query: 213 QVAAAEVLK 221
           Q AA   L+
Sbjct: 810 QEAADAALR 818



 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           ++  + L E+A    G   E+ +  +SGP HDPRF + V ++G         S
Sbjct: 497 KNPVSGLMEYAQ-FLGQNCEFLLLDQSGPSHDPRFRMQVMLNGRLFPVAEASS 548


>gi|7229534|gb|AAF42866.1|AF225925_1 staufen [Musca domestica]
          Length = 985

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 4/75 (5%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSG---PDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           +  T+L EW        P +K+   +G        +F V V    L   +G+  SK++A 
Sbjct: 724 NPITKLVEWCQHNKEKEPIFKIITEAGGKERARQRQFVVEVCTKDLTV-RGVGNSKKSAR 782

Query: 213 QVAAAEVLKREGIWT 227
           + AA  +L   G+ T
Sbjct: 783 RNAAQNMLLALGVDT 797



 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 8/79 (10%)

Query: 151 GKFRRDAKTE-------LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203
           GK   D K+        L         ++ +Y++T  +GP H  RFTV +++        
Sbjct: 276 GKESNDFKSSREKTPMCLVNDLARFNKISFQYRLTGENGPAHCKRFTVTLKLGDEEY-MA 334

Query: 204 MDCSKRAAEQVAAAEVLKR 222
                + A+ +AA E + +
Sbjct: 335 EGFKIKEAQHMAAKEAILK 353



 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           K  +  ++K+    GP H   FT    + G    +     K+ +++ AA ++L+  
Sbjct: 590 KRNLPVDFKILREDGPAHMRTFTTACIV-GQIVTEAEGTGKKISKKKAAQKMLEEL 644


>gi|296806447|ref|XP_002844033.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
 gi|238845335|gb|EEQ34997.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
          Length = 156

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 55/124 (44%), Gaps = 6/124 (4%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             +E  + Y+F ++ L+ +AL+    S +Y    + L  +GD  + L I +         
Sbjct: 17  EAVEGILDYSFKDKCLVLQALSLPG-SSAYSTGNKGLAQVGDAAVRLHIISEGHQR--GM 73

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
             G++S     + +    ++V  + +L   I ++   R  V S      A  VE+L+ A+
Sbjct: 74  SRGQISAILGRVSNNNNLAEVGVKKNLGESIFIN---RSQVGSISPGSMATTVEALLGAV 130

Query: 127 YLDG 130
           Y+D 
Sbjct: 131 YIDS 134


>gi|255937045|ref|XP_002559549.1| Pc13g11310 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211584169|emb|CAP92200.1| Pc13g11310 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 372

 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/242 (16%), Positives = 75/242 (30%), Gaps = 44/242 (18%)

Query: 3   ALRYSTLEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           + + + L  R+ Y  +   +  L + L  +S   +   +   L   G  +L    +  L 
Sbjct: 88  SAKLAALHARL-YLPSRLPIETLARTLVDTSADPNPNFNNASLATFGHDLLSYYATEHLI 146

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELD---------------------------- 92
             +       +     + V  +T + +ARE                              
Sbjct: 147 CTYPRLPLTVIFAAMYAYVGPKTLAAMAREWGPTHPTARPYETQKNWRKTVTSKIFYDDE 206

Query: 93  LASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK 152
               ++ +      V +   S  A+ V +++ A+YL  G   A  F ++++  R L   +
Sbjct: 207 FGDPLKGAKHSAAGVTTEQAS--AEFVRAVMGAIYLHAGRAAAKRFFEQHFLSRHLNISE 264

Query: 153 FR------RDAKTELQEWAHAKFGVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMD 205
                   RD    L      +    P  KV   +G     P F V +        +G  
Sbjct: 265 LFNFQAPARD----LTRLCARESFERPVAKVISETGRKSRHPVFVVGIFSGQDKLGEGAG 320

Query: 206 CS 207
            S
Sbjct: 321 AS 322


>gi|302819689|ref|XP_002991514.1| hypothetical protein SELMODRAFT_429802 [Selaginella moellendorffii]
 gi|300140716|gb|EFJ07436.1| hypothetical protein SELMODRAFT_429802 [Selaginella moellendorffii]
          Length = 569

 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 72/222 (32%), Gaps = 57/222 (25%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
              +LE ++ Y F NRSLL +A+TH+S  +     Y+     G   L   I   + N   
Sbjct: 386 SLESLEHKLQYKFQNRSLLVEAITHASQPNCLL-CYQH----GSVELDCEIRKFVQN--- 437

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
                         V  +  +    +L                      +  D++ES+  
Sbjct: 438 --------------VKEKPDASCFEDLS------------------APKVLGDLLESITG 465

Query: 125 ALYLDGGIEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+++D   ++   +  V        +  G  R      L E    +      ++    + 
Sbjct: 466 AIFVDTNFDLEKLWRVVLPLLSP-LVTPGTLRFHPVRILMELCARQGMKVSFFRTEATTT 524

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCS----KRAAEQVAAAEVL 220
                   V V     +  +    S    +++A+  AA ++L
Sbjct: 525 -------EVRVTFGEESLVE---TSQEKPRKSAKIDAALKML 556


>gi|297462872|ref|XP_002702377.1| PREDICTED: adenosine deaminase, RNA-specific, B1 (RED1 homolog rat)
           [Bos taurus]
 gi|297471374|ref|XP_002685172.1| PREDICTED: adenosine deaminase, RNA-specific, B1 (RED1 homolog rat)
           [Bos taurus]
 gi|296490897|gb|DAA33010.1| adenosine deaminase, RNA-specific, B1 [Bos taurus]
          Length = 748

 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 8/94 (8%)

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           LD G      F     K+R    G      K  L +    +     +Y +  ++GP H P
Sbjct: 55  LDEGSNGHAKF---RLKKRRRAPGPAL--PKNALMQL--NEIKPGLQYTLLSQTGPVHAP 107

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            F + VE++G    +G   +K+ A+  AA + L+
Sbjct: 108 LFLMSVEVNGQV-FEGSGPTKKKAKLHAAEKALR 140



 Score = 58.5 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 47/162 (29%), Gaps = 15/162 (9%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE- 120
            F +A E  L++  +   +A+  S  A   D    +   +       S +        + 
Sbjct: 144 QFPNASEAHLAMGRSLSTNADFTSDQA---DFPDALF--NGFETPDRSEVPFYLGSNGDD 198

Query: 121 --SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
             S    L L     V                    ++    L E          +Y   
Sbjct: 199 SFSSSGDLSLAAS-PVPAGLAQPPLPGPPPFPPPSGKNPVMILNEL-----RPGLKYDFL 252

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 253 SESGESHAKNFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293


>gi|170085495|ref|XP_001873971.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164651523|gb|EDR15763.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 367

 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 56/128 (43%), Gaps = 4/128 (3%)

Query: 17  FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           F ++SL  +A T SS +    +  ERL  LG   L + ++ +LFN     K  E+S +  
Sbjct: 50  FTHKSL-RRA-TRSSTNLDDFDDNERLTELGKAALNVAVAHVLFNKRPMLKPSEMSSQHK 107

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
            ++S E  +      +L   +R   +L   + +   +    +  + +  +Y + G E   
Sbjct: 108 HILSDENINNWVTFYNLRMKLRCHPNLYPRLNTPQET--CSIFYAYVGGVYAESGQEAVR 165

Query: 137 TFVDKYWK 144
            ++D   +
Sbjct: 166 EWIDLLVE 173



 Score = 62.0 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)

Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             ++  VT EY   F SGP H  R+TV   ++G+    G   SK+ A++ AA +     G
Sbjct: 307 TASQRRVTVEYPAEF-SGPSHAGRWTVKCVVNGIPKGVGTGGSKQVAKEEAARQAYYAMG 365

Query: 225 IWT 227
            WT
Sbjct: 366 -WT 367


>gi|170042672|ref|XP_001849041.1| ribonuclease iii [Culex quinquefasciatus]
 gi|167866168|gb|EDS29551.1| ribonuclease iii [Culex quinquefasciatus]
          Length = 300

 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 58/152 (38%), Gaps = 22/152 (14%)

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           L++ ++S V+    + +  +L + S+   S+              AD++E+ + ALY+D 
Sbjct: 109 LTLLWSSQVNNRNQAVICDDLGMTSYAVYSNKQADLKTKER----ADLLEAFLGALYVDK 164

Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           G+  A         +RA  S     D    LQ              V   +GP +   +T
Sbjct: 165 GLNTAKRSPTTGMTRRASCSRAGHSD----LQ--------------VIECNGPTNTRVYT 206

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           + V   G   A     S +  E  AA + L+ 
Sbjct: 207 MAVYFRGKHLACCNGHSMQQVEINAAKQALEN 238


>gi|224074235|ref|XP_002304313.1| predicted protein [Populus trichocarpa]
 gi|222841745|gb|EEE79292.1| predicted protein [Populus trichocarpa]
          Length = 535

 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 53/166 (31%), Gaps = 19/166 (11%)

Query: 9   LEKR--IGY------AFANRS-------LLEKALTHSSI----SHSYQESYERLEFLGDR 49
           LE +  +GY       F + +       LL  A  H S     +   +  + RL FLG  
Sbjct: 135 LEAKQALGYPLEPSDRFGDDNPAKQFDTLLYLAFQHPSCERTNARHVRSGHSRLCFLGQY 194

Query: 50  ILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS 109
           +L L  +      +       L  R   L+      +  +   L + I    ++ K    
Sbjct: 195 VLELAFAEYFLQRYPRESPAPLRERVFGLIGKRNLPKWIKAASLHNLIFPYDNMDKLQRK 254

Query: 110 FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
                   V  ++  A+YL  G+      + + ++          +
Sbjct: 255 EREPPVKSVFWAVFGAIYLCFGMPEVYRVLFEVFEMDPEAEDCQPK 300



 Score = 55.1 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 46/136 (33%), Gaps = 10/136 (7%)

Query: 18  ANRSL---LEKALTHSS-ISHSYQE-SYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            N  L   L+    H S     +    YERLE++G +I  ++++  L      A    L 
Sbjct: 392 RNIELGLGLQLCFLHPSNYKFEHPRFCYERLEYVGQKIQDIVMAERLLMKHLDAPGKWLQ 451

Query: 73  VRFNSLVSAETCSQVARELDLASFI----RVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
            +   ++  + C +  RE  L  +I    +V      +      S    V  SL    Y 
Sbjct: 452 EKHRRVLMNKFCGRYLREKHLHKYITYADKVQDAYEHNRRLRNPST-TAVNHSLHGLSYT 510

Query: 129 DGGIEVAGTFVDKYWK 144
             G       +   + 
Sbjct: 511 IYGKPDVRRLMFDVFD 526


>gi|307203953|gb|EFN82860.1| SON protein [Harpegnathos saltator]
          Length = 891

 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213
           +   + L E+   K    P Y + F  GPDH   F   V+++G+     +   +K+ A+ 
Sbjct: 817 KHPVSLLGEYCSKKKLGAPVYDLCFECGPDHRKNFLFKVKVNGIEYKPSVASPNKKQAKA 876

Query: 214 VAAAEVLKREGIW 226
            AA   L+  G+ 
Sbjct: 877 EAAQICLQTLGLL 889


>gi|291414566|ref|XP_002723530.1| PREDICTED: RNA-specific adenosine deaminase B1 isoform 2
           [Oryctolagus cuniculus]
          Length = 715

 Score = 63.6 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y +  ++GP H P F + VE++G A  +G   +K+ A+  AA
Sbjct: 79  PKNALMQL--NEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQA-FEGSGPTKKKAKLHAA 135

Query: 217 AEVLK 221
            + L+
Sbjct: 136 EKALR 140



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +     +Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293


>gi|291414564|ref|XP_002723529.1| PREDICTED: RNA-specific adenosine deaminase B1 isoform 1
           [Oryctolagus cuniculus]
          Length = 701

 Score = 63.2 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y +  ++GP H P F + VE++G A  +G   +K+ A+  AA
Sbjct: 79  PKNALMQL--NEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQA-FEGSGPTKKKAKLHAA 135

Query: 217 AEVLK 221
            + L+
Sbjct: 136 EKALR 140



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +     +Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293


>gi|242021000|ref|XP_002430935.1| tar RNA binding protein, putative [Pediculus humanus corporis]
 gi|212516153|gb|EEB18197.1| tar RNA binding protein, putative [Pediculus humanus corporis]
          Length = 335

 Score = 63.2 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             + LQE+  +     P Y++       H+P F   V ++ L    G   SKR A+  AA
Sbjct: 6   PVSVLQEYLVSLKQC-PSYELLHNGVGTHNPLFIYRVHVNDL-FEDGKGKSKREAKHNAA 63

Query: 217 AEVLKREGI 225
             +LK+  +
Sbjct: 64  ENMLKKLNV 72



 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 2/93 (2%)

Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
            ++   + V K    +  +      +    L+E+        P Y+V   SG  H   F 
Sbjct: 71  NVDETNSSVPKKQYDKYDEMDPGE-NYVGMLKEYCLMNPYPEPTYQVEEESGQPHCKVFK 129

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +V  +S      G+  +K+ A+Q+ A ++L+R 
Sbjct: 130 MVCFVS-QLQEYGISSTKKGAKQIGAFKMLERL 161


>gi|325181016|emb|CCA15426.1| AlNc14C11G1368 [Albugo laibachii Nc14]
          Length = 841

 Score = 63.2 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 77/224 (34%), Gaps = 40/224 (17%)

Query: 25  KALTHSSISHSYQESYERLE-----FLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           +ALT  +         E LE      LGD ++ ++++  L + F  +K+  L    + + 
Sbjct: 628 QALTRPT---------EALESLWIMHLGDAMINMVVAAFLIHTFPCSKDELLLHVQSHVT 678

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL--DGGIEVAGT 137
           S E     AR+  +A  + +  D  ++     +   A V  + +  L+L  DG +     
Sbjct: 679 SNEQRILAARKAGIAHLLPLLCDEYEEEQINGSDKLARVFNTTLGFLFLENDGNVPFMTQ 738

Query: 138 FVDKYWKQRALKSGKFRRDAKTELQEW---AHAKFGVTPEY-------------KVTFRS 181
            +        L     R        EW     +       +             ++   S
Sbjct: 739 ILKHIMFPDILAVIDRR--------EWQRSTQSFGHYLLSWDKQNHKRTRCTFKRLRDSS 790

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
                  FTV + ++    A+G   S   A+  A  + L+  G+
Sbjct: 791 ADSKHGHFTVALYVNDHMVARGRGISMSTAQDAACMKALRMFGL 834



 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 1/101 (0%)

Query: 39  SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
           S +RL FLG+  L  L +  L        +  +  +  S+V  ET   + + + L S ++
Sbjct: 453 SQDRLAFLGNHALKFLAAFSLSFKIADGSDNPM-EQAPSVVLDETVRDITQSVGLDSLLQ 511

Query: 99  VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
            + +L         S+  + + +L+ A+YL  GIE   TF+
Sbjct: 512 CAFNLSTLKSDVKQSMFENCIRALVGAIYLASGIEACQTFL 552


>gi|296229001|ref|XP_002760089.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
           1 [Callithrix jacchus]
          Length = 1226

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E+A      T E+ +  +SGP H+PRF   V I+G         SK+ A+Q 
Sbjct: 502 KNPISGLLEYAQ-FASQTCEFNLIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 560

Query: 215 AAAEVL 220
           AA + +
Sbjct: 561 AAMKAM 566



 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   T L E  H K G + E+++  + GP H+P+F   V++           SK+ A+Q+
Sbjct: 613 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFEYCVQVGAQTFPSVSAPSKKVAKQM 671

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 672 AAEEAMKAL 680



 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+  +Q AA   L
Sbjct: 731 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 789

Query: 221 K 221
           +
Sbjct: 790 R 790


>gi|126321042|ref|XP_001367821.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 569

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            +  + L +   AK    P+Y +    G      F + V++ G A A G+  SK+ A++ 
Sbjct: 305 MNPVSCLAQILQAKKEKEPDYALLSDRGKSRRREFLMQVKV-GSAVATGIGLSKKIAKRN 363

Query: 215 AAAEVLKREGIWT 227
           AA  +L   G  T
Sbjct: 364 AAEAMLLHLGYKT 376



 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             V P+YK+    GP H   F+V + +      Q    S + A+  AA + L+
Sbjct: 20  NRVQPQYKLLNERGPAHCKMFSVQLTLGEQTW-QSEGSSIKKAQHAAANKALR 71



 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           K  +   ++V   SGP H   F   V + G   A+G   SK+ +++ AA+ +L+  
Sbjct: 217 KRNMPVTFEVIKESGPPHMKNFVTRVSV-GEFSAEGEGNSKKLSKKRAASSILQEL 271



 Score = 36.2 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 144 KVFYVQLTVGNNEFF-GEGKTRQAARHNAATKALQAL 179


>gi|121711409|ref|XP_001273320.1| RNase3 domain protein [Aspergillus clavatus NRRL 1]
 gi|119401471|gb|EAW11894.1| RNase3 domain protein [Aspergillus clavatus NRRL 1]
          Length = 421

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 46/128 (35%), Gaps = 10/128 (7%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            +E+  GY F +  LL +A+T +    +  +    L       +G     L    F    
Sbjct: 6   KIEQISGYRFRDERLLHEAMTAAGADENNHDGNRPL-----AQVGKSFVELCSVKFGYLN 60

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
             E        ++ + C+ +A+E+ +   +      R     +   +    V +LI A+ 
Sbjct: 61  RTER-ALKIQNINNDRCALIAKEIGIDQHLTYCP--RHQG--YSKKVLNIAVNALIGAIN 115

Query: 128 LDGGIEVA 135
           +D   E  
Sbjct: 116 IDSDSEEV 123


>gi|296229003|ref|XP_002760090.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
           2 [Callithrix jacchus]
          Length = 1200

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E+A      T E+ +  +SGP H+PRF   V I+G         SK+ A+Q 
Sbjct: 502 KNPISGLLEYAQ-FASQTCEFNLIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 560

Query: 215 AAAEVL 220
           AA + +
Sbjct: 561 AAMKAM 566



 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   T L E  H K G + E+++  + GP H+P+F   V++           SK+ A+Q+
Sbjct: 613 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFEYCVQVGAQTFPSVSAPSKKVAKQM 671

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 672 AAEEAMKAL 680



 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+  +Q AA   L
Sbjct: 731 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 789

Query: 221 K 221
           +
Sbjct: 790 R 790


>gi|296229005|ref|XP_002760091.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
           3 [Callithrix jacchus]
          Length = 1181

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E+A      T E+ +  +SGP H+PRF   V I+G         SK+ A+Q 
Sbjct: 502 KNPISGLLEYAQ-FASQTCEFNLIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 560

Query: 215 AAAEVL 220
           AA + +
Sbjct: 561 AAMKAM 566



 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   T L E  H K G + E+++  + GP H+P+F   V++           SK+ A+Q+
Sbjct: 613 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFEYCVQVGAQTFPSVSAPSKKVAKQM 671

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 672 AAEEAMKAL 680



 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+  +Q AA   L
Sbjct: 712 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 770

Query: 221 K 221
           +
Sbjct: 771 R 771


>gi|168048373|ref|XP_001776641.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
           patens]
 gi|162671933|gb|EDQ58477.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
           patens]
          Length = 1053

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           K  LQE A       P Y  T RSGP H P FT  VE++ +  +     +K+ AE+ AA 
Sbjct: 345 KNLLQETAQRAGVSLPVYATT-RSGPGHLPVFTCTVEVASMTFSGEAAKTKKQAEKNAAM 403

Query: 218 E---VLKR 222
                LK+
Sbjct: 404 AAWSALKQ 411



 Score = 61.6 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 26/69 (37%), Gaps = 8/69 (11%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK----RAAE 212
            K +LQE A       P Y    R GPDH PRF   V  +G         +     R AE
Sbjct: 231 YKNQLQELAQRSCFNLPAYACI-REGPDHAPRFKATVNFNGEVFES---PNYCNTLRQAE 286

Query: 213 QVAAAEVLK 221
             AA   L 
Sbjct: 287 HAAAEVALN 295


>gi|125603259|gb|EAZ42584.1| hypothetical protein OsJ_27148 [Oryza sativa Japonica Group]
          Length = 125

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 6/84 (7%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
              L +     + K++LQE+        P Y  T   G  H  +F   V + G   +   
Sbjct: 27  PAPLHTPPPHCNYKSKLQEYLQQANKQLPIY-CTKCKGEHHQLKFKSTVMVDGEEFSSTF 85

Query: 205 DCSK-RAAEQVAAAEV----LKRE 223
              + + AEQ AA       L+R+
Sbjct: 86  CHRRVKDAEQDAAKVAYDTLLERK 109


>gi|312079805|ref|XP_003142331.1| hypothetical protein LOAG_06747 [Loa loa]
 gi|307762503|gb|EFO21737.1| hypothetical protein LOAG_06747 [Loa loa]
          Length = 215

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 24/48 (50%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           EYK+   SGP H  +FTV + ++      G   S + A+Q AA   L 
Sbjct: 71  EYKLMDESGPAHKKQFTVSLVLTPDQVFYGKGASIKKAQQSAAETALN 118


>gi|301767390|ref|XP_002919107.1| PREDICTED: double-stranded RNA-specific editase 1-like isoform 2
           [Ailuropoda melanoleuca]
          Length = 741

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 79  PKNALMQL--NEIKPGLQYALLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135

Query: 217 AEVLK 221
            + L+
Sbjct: 136 EKALR 140



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +     +Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293


>gi|301767388|ref|XP_002919106.1| PREDICTED: double-stranded RNA-specific editase 1-like isoform 1
           [Ailuropoda melanoleuca]
          Length = 701

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 79  PKNALMQL--NEIKPGLQYALLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135

Query: 217 AEVLK 221
            + L+
Sbjct: 136 EKALR 140



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +     +Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293


>gi|281341190|gb|EFB16774.1| hypothetical protein PANDA_007702 [Ailuropoda melanoleuca]
          Length = 718

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 69  PKNALMQL--NEIKPGLQYALLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 125

Query: 217 AEVLK 221
            + L+
Sbjct: 126 EKALR 130



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +     +Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 232 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 283


>gi|74001569|ref|XP_544931.2| PREDICTED: similar to RNA-specific adenosine deaminase  B1 isoform
           DRADA2a [Canis familiaris]
          Length = 746

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 124 PKNALMQL--NEIKPGLQYALLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 180

Query: 217 AEVLK 221
            + L+
Sbjct: 181 EKALR 185



 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 46/162 (28%), Gaps = 15/162 (9%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE- 120
            F +A E  L++      + +  S  A   D    +   +       S +        + 
Sbjct: 189 QFPNASEAHLAMGRTLSANTDFTSDQA---DFPDTLF--NGFETPDRSEVPFYLGSNGDD 243

Query: 121 --SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
             S    L L      AG                  ++    L E          +Y   
Sbjct: 244 SFSSSGDLSLAASPAPAG-LAQPPLPGPPPFPPPSGKNPVMILNEL-----RPGLKYDFL 297

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 298 SESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 338


>gi|9633838|ref|NP_051918.1| gp029L [Rabbit fibroma virus]
 gi|6578557|gb|AAF17911.1|AF170722_29 gp029L [Rabbit fibroma virus]
          Length = 116

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKV-TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
           ++  T L E+         E+ +   R+G  H+P FT VV +SG +       +K+ A +
Sbjct: 42  KNPCTVLNEYCQITSR---EWSINVTRTGQSHNPTFTAVVTVSGYSFKSATGSNKKEARK 98

Query: 214 VAAAEVL 220
            AA E +
Sbjct: 99  NAAKEAM 105


>gi|201068|gb|AAA40150.1| serine/threonine-specific protein kinase [Mus musculus]
          Length = 518

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 20/53 (37%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
              GV   YK    SGP HD RFT  V I      +    SK  A   AA   
Sbjct: 18  QMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFGEAKGRSKTEARNAAAKLA 70



 Score = 48.9 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 17/37 (45%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            RF    +I       G   +K+ A+Q+AA E  ++ 
Sbjct: 124 QRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKL 160


>gi|156554944|ref|XP_001601978.1| PREDICTED: similar to conserved hypothetical protein [Nasonia
           vitripennis]
          Length = 900

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213
           +   + L E+   +    P Y++ F  GPDH   F   V+++G+     +   +K+ A+ 
Sbjct: 827 KHPVSLLGEYCSKRKFGAPVYELCFECGPDHKKNFLFKVKVNGVEYKPAVASPNKKLAKA 886

Query: 214 VAAAEVLKREGIW 226
            AA   L+  G+ 
Sbjct: 887 EAAQVCLQSIGLL 899


>gi|156551920|ref|XP_001607288.1| PREDICTED: similar to GA15248-PA [Nasonia vitripennis]
          Length = 330

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 80/238 (33%), Gaps = 37/238 (15%)

Query: 15  YAFANR-------SLLEKALTHSSISHSYQESYERL-------------EFL--GDRILG 52
           YAF NR        LLE+A  H S     +E  +++             E +  G  I+ 
Sbjct: 67  YAFNNRLSEQFDTDLLEQAFIHRSYVIREEEDQKKVGIEDPQLDLTDNREMIDEGREIVS 126

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV--SSDLRKDVCSF 110
           L+I   L      A +  +      L+S    +  A  +     I    S    + +   
Sbjct: 127 LVIDNYLSQSLPLAPQECIYAFKQYLLSTPVLANTASGIGAKDLILSADSPLEEETI--- 183

Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR----RDAKTELQEWAH 166
                A+   +L +AL     +E  G FV      + +           +    L +   
Sbjct: 184 -----ANTFYALTSALNRSVDLEHTGLFVRDILIAQLVAKDLMEIWCPEEPVEILNDILD 238

Query: 167 AKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +     E ++  ++G +   P + + V  +      G   +   AE++AA   L+R 
Sbjct: 239 REHRELAEPRIIAQNGVNTLLPVYNIAVYSNQEFLGSGFGETIEEAEKMAAINALQRM 296


>gi|156842019|ref|XP_001644379.1| hypothetical protein Kpol_1064p1 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156115021|gb|EDO16521.1| hypothetical protein Kpol_1064p1 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 377

 Score = 62.8 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 70/227 (30%), Gaps = 35/227 (15%)

Query: 31  SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90
           S++ +       L   G  +L   ++  L   +       L+   ++ +S +  + + + 
Sbjct: 130 SVNTNNYFDNFGLNIFGKNLLTFHVTHHLLQKYPRLPTVVLNAAVDAYISEKVLASIGKS 189

Query: 91  LD--------LASFIR-------VSS------------DLRKDVCSFMTS--IQADVVES 121
                     L  F R       +               +        +S    A  V S
Sbjct: 190 WGIETENTSVLDRFTRNEPINITLGKLRFMNNSLNKEDGIEYVSGQLQSSDAAYALAVRS 249

Query: 122 LIAALYLDGGI---EVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYK 176
           +IA L+        ++   F++     R L   +  +  +   EL      +    P  +
Sbjct: 250 IIATLWASTQKTQPDLVIKFINDNILSRKLDITRMFQFENPTRELATLCRREGFEQPISR 309

Query: 177 VTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +   SG     P F + V        +G   S + A+  AA + L +
Sbjct: 310 LLAESGRLSKAPVFIIGVFSGNEKLGEGFGSSLKEAKARAATDALMK 356


>gi|125561394|gb|EAZ06842.1| hypothetical protein OsI_29078 [Oryza sativa Indica Group]
          Length = 310

 Score = 62.8 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 6/73 (8%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK-RAAEQV 214
           + K++LQE+        P Y  T   G  H  +F   V + G   +      + + AEQ 
Sbjct: 36  NYKSKLQEYLQQANKQLPIY-CTKCKGEHHQLKFKSTVMVDGEEFSSTFCHRRVKDAEQD 94

Query: 215 AAAEV----LKRE 223
           AA       L+R+
Sbjct: 95  AAKVAYDTLLERK 107



 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 8/67 (11%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSG---PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           K+ L E+        PEY VT   G   P     +   V  +G     G   +K+ AEQ 
Sbjct: 128 KSILHEYTTKTKTDQPEYSVTKTEGSVTP-----YVSSVSFAGHTYTGGAARNKKDAEQK 182

Query: 215 AAAEVLK 221
           AA   +K
Sbjct: 183 AARAAVK 189


>gi|115476208|ref|NP_001061700.1| Os08g0384100 [Oryza sativa Japonica Group]
 gi|75225116|sp|Q6YW64|DRB4_ORYSJ RecName: Full=Double-stranded RNA-binding protein 4; AltName:
           Full=dsRNA-binding protein 4
 gi|40253891|dbj|BAD05825.1| unknown protein [Oryza sativa Japonica Group]
 gi|113623669|dbj|BAF23614.1| Os08g0384100 [Oryza sativa Japonica Group]
          Length = 312

 Score = 62.8 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 6/73 (8%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK-RAAEQV 214
           + K++LQE+        P Y  T   G  H  +F   V + G   +      + + AEQ 
Sbjct: 38  NYKSKLQEYLQQANKQLPIY-CTKCKGEHHQLKFKSTVMVDGEEFSSTFCHRRVKDAEQD 96

Query: 215 AAAEV----LKRE 223
           AA       L+R+
Sbjct: 97  AAKVAYDTLLERK 109



 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 8/67 (11%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSG---PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           K+ L E+        PEY VT   G   P     +   V  +G     G   +K+ AEQ 
Sbjct: 130 KSILHEYTTKTKTDQPEYSVTKTEGSVTP-----YVSSVSFAGHTYTGGAARNKKDAEQK 184

Query: 215 AAAEVLK 221
           AA   +K
Sbjct: 185 AARAAVK 191


>gi|303272367|ref|XP_003055545.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226463519|gb|EEH60797.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 348

 Score = 62.8 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 73/211 (34%), Gaps = 27/211 (12%)

Query: 30  SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE------------GELSVRFNS 77
            S+     E+ ERL F GD++L   ++  L+      +E            G +S    S
Sbjct: 101 RSVPRDGAET-ERLAFFGDKVLNHAVAMSLYAQQVRMRERPGHEDDASYCVGRMSTLVAS 159

Query: 78  LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL-----DGGI 132
             S +  +++   L     I        +     +     ++E+   A++L     D G 
Sbjct: 160 ARSNKLFTRLLARLLRDDMIAAVPPGALEKGRAHS--VGTMIEA---AVFLVHEGSDEG- 213

Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
           + A   V  +  ++A +      + K E  E          E K      PD    F   
Sbjct: 214 QTAVDEVGLFLLEQAEEMAAEVFNFKGEFYELVAKGVEGEMEVKTLKEDRPD--EYFMAY 271

Query: 193 VEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             + G+  A     +K  AE  AA  VL+R 
Sbjct: 272 ATLDGVK-ANARGRNKLEAEHGAAKAVLERL 301


>gi|145234665|ref|XP_001389981.1| RNAse III [Aspergillus niger CBS 513.88]
 gi|134057653|emb|CAK38052.1| unnamed protein product [Aspergillus niger]
          Length = 154

 Score = 62.8 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 61/144 (42%), Gaps = 11/144 (7%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKAL----THSSISHSYQESYERLEFLGDRILGLLIST 57
            A R  TL+  IGY F + +   +AL     H     +  + +++L  +GD +L ++++ 
Sbjct: 7   PAERAQTLQSLIGYIFNDPNRAMEALVAAGVHMPGLINRTDGHKQLALVGDAVLRMILAL 66

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
             +      +E   S+  ++       +Q  R L L   + V+             + A 
Sbjct: 67  DGYEA-RKGREFTNSIL-STKAGNTYIAQAGRNLGLDKLVIVNP---AQAGMVADKVMAS 121

Query: 118 VVESLIAALYL--DGGIEVAGTFV 139
            VE++I A+++  DG +E     +
Sbjct: 122 AVEAIIGAVFMDSDGSVESVRPVL 145


>gi|170051370|ref|XP_001861732.1| ribonuclease iii [Culex quinquefasciatus]
 gi|167872669|gb|EDS36052.1| ribonuclease iii [Culex quinquefasciatus]
          Length = 186

 Score = 62.8 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 55/163 (33%), Gaps = 41/163 (25%)

Query: 62  HFDSAKEGELSVRFNSLVSA-ETCSQVA-RELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
            F   ++G L+    +     E+ S++   +L + S+   S           T  +AD++
Sbjct: 1   MFPDLEKGGLATYRAAAFQEDESLSKIWSDDLGITSYAVYS----NKKADLKTKDRADLL 56

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF 179
           E+ + ALY+D G+  A                                         V  
Sbjct: 57  EAFLGALYVDKGLNTAKRSAT-----------------------------------CVIE 81

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            +GP +   +T+ V   G   A     S + A+  AA + L+ 
Sbjct: 82  CNGPTNTRVYTMAVYFRGKHLACSNGHSIQEAKINAAKQALEN 124


>gi|301774246|ref|XP_002922574.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-specific
           adenosine deaminase-like [Ailuropoda melanoleuca]
          Length = 1144

 Score = 62.8 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  T L E  H K G + E+++  R GP HDP+F   V +           SK+ A+Q+
Sbjct: 560 KNPVTTLLECVH-KLGSSCEFRLLSREGPAHDPKFQYCVAMGAHTFPTASAPSKKVAKQM 618

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 619 AAEEAVKAL 627



 Score = 58.9 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E+A      T E+ +  + GP H+PRF   V I G         SK+ A+Q 
Sbjct: 449 KNPISGLLEYAQ-FASQTCEFNLLEQRGPPHEPRFKFQVIIGGREFPPAEAGSKKVAKQD 507

Query: 215 AAAEVL 220
           AA + +
Sbjct: 508 AALKAM 513



 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+  +Q AA   L
Sbjct: 678 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 736

Query: 221 K 221
           +
Sbjct: 737 R 737


>gi|12849779|dbj|BAB28477.1| unnamed protein product [Mus musculus]
          Length = 313

 Score = 62.8 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 1/74 (1%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
           K  K + +    LQE A       PEY ++   GP H   +T +  +       G   S 
Sbjct: 119 KQPKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESF-METGKGASN 177

Query: 209 RAAEQVAAAEVLKR 222
           + A++ AA + L +
Sbjct: 178 KQAKRNAAEKFLAK 191



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 158 KTELQ---EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           KT +Q   E+      + P Y+        H P FT  V +  +    G   SK+ A+  
Sbjct: 33  KTPIQVLHEYGMKTKNI-PVYECERSDVQVHVPTFTFRVTVGDIT-CTGEGTSKKLAKHR 90

Query: 215 AAAEVLK 221
           AA   + 
Sbjct: 91  AAEAAIN 97


>gi|73696282|gb|AAZ80928.1| nuclear RNase III Drosha [Macaca mulatta]
          Length = 174

 Score = 62.8 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 40/82 (48%)

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F S +EG L+    ++V  +  + +A++L+L  F+  +        S +    A+  E+L
Sbjct: 2   FPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCFEAL 61

Query: 123 IAALYLDGGIEVAGTFVDKYWK 144
           I A+YL+G +E A     +   
Sbjct: 62  IGAVYLEGSLEEAKQLFGRLLF 83



 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLIST 57
           + +  E+ IG  F +  LL +A T  +   +H      +R+EFLGD I+ L+ + 
Sbjct: 120 KLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATE 174


>gi|322786514|gb|EFZ12948.1| hypothetical protein SINV_03181 [Solenopsis invicta]
          Length = 289

 Score = 62.8 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 82/236 (34%), Gaps = 31/236 (13%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERL-------------EFL--GDRILG 52
              KR+  +F +   LE+A TH S     ++    +             EF+  GD +  
Sbjct: 44  AFNKRLSESF-DMEKLEQAFTHRSYIIQEEQRQREMGIEDPTLAIQDNTEFVRKGDELTS 102

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
             + + L     +A E  +    + L+S E  ++ A  +     I   +  +K       
Sbjct: 103 QFVQSYLSQILPNASEDVIISLHDYLLSEEILAKAAFHIGTKDIILTEAMTQKT------ 156

Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK-TE----LQEWAHA 167
              AD   +L+AAL     +  A  FV  +      +        K T+    L +    
Sbjct: 157 --LADTFLALVAALAESVDVNHAANFVKDFLIVILAEKDLLEI-WKPTQPVEHLNDVLQK 213

Query: 168 KFGVTPEYKVTFRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +     E ++   +G +     + V +         G   + + A+ VAA  +L R
Sbjct: 214 QNRSPVEPRLIGHTGQNTLLVVYHVAMYSDKEFLGSGFGQTIQEAKNVAALNILSR 269


>gi|260833280|ref|XP_002611585.1| hypothetical protein BRAFLDRAFT_117159 [Branchiostoma floridae]
 gi|229296956|gb|EEN67595.1| hypothetical protein BRAFLDRAFT_117159 [Branchiostoma floridae]
          Length = 351

 Score = 62.8 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 69/227 (30%), Gaps = 28/227 (12%)

Query: 19  NRSLLEKALTHSSISHSYQ-----------------ESYERLEFLGDRILGLLISTLLFN 61
           N S L  A    S     +                 +   +L   G ++    I + L  
Sbjct: 98  NLSTLRAAFIDRSYVKEEEERRRELSLPLEDVKLDMQDNSQLAEQGWQVTTNYIHSFLRA 157

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F    +  +    + +   +    +A  L +   IR S+            +   V  +
Sbjct: 158 EFPLLPDEGVKAIHDYVTQEDMLVWIANHLGVKDLIRCSTFPIP------PPVTKQVFLA 211

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR----DAKTELQEWAHAKFGVTPEYKV 177
           +I A+  D G + A TFV  +   + +           +    L E         PE +V
Sbjct: 212 VIGAVNHDQGSQRAETFVHDFVVAQLVGKDVNAMWDIPNPMGMLAEMLQKAGKGEPEPRV 271

Query: 178 TFRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +SG +   P F V V  +     +    +   A + AA   L   
Sbjct: 272 INQSGANTVTPVFFVGVYSNKELLGEASGDTMPLAVEEAARVALANM 318


>gi|17568157|ref|NP_508196.1| STAUfen (dsRNA binding protein) homolog family member (stau-1)
           [Caenorhabditis elegans]
 gi|1519663|gb|AAB07566.1| Hypothetical protein F55A4.5 [Caenorhabditis elegans]
          Length = 705

 Score = 62.8 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
            + +  + L +   AK    P +++    G      F + V+       +G   +KR A+
Sbjct: 410 HQINPVSRLIQVTQAKSKEHPTFELVAEHGVSKYKEFIIQVKYGDDVQ-EGKGPNKRLAK 468

Query: 213 QVAAAEVLKREG 224
           + AA  +L+  G
Sbjct: 469 RAAAEAMLESIG 480



 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 23/48 (47%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            Y +   SGP H   FTV + ++     +G   S + A+Q +A   LK
Sbjct: 95  VYNLQDESGPAHKKLFTVKLVLTEAETFEGSGTSIKRAQQASAEAALK 142



 Score = 49.7 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQ--GMDCSKRAAEQVAAAEVL 220
           +  V   ++V    GP HD ++ V         +  A+  G    K++A+Q A  ++L
Sbjct: 303 QLKVNVVFEVLKEEGPPHDRQYVVRCAFVTSGNVVKAEAVGKGKKKKSAQQEACTQLL 360



 Score = 37.0 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           V+V I+G + A G+  +   A+Q AAA+ L
Sbjct: 233 VIVNINGKSIATGIGETYPLAKQDAAAKAL 262


>gi|58265282|ref|XP_569797.1| hypothetical protein CNC05030 [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|134109217|ref|XP_776723.1| hypothetical protein CNBC2140 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50259403|gb|EAL22076.1| hypothetical protein CNBC2140 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57226029|gb|AAW42490.1| hypothetical protein CNC05030 [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 422

 Score = 62.8 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 49/289 (16%), Positives = 81/289 (28%), Gaps = 91/289 (31%)

Query: 23  LEKALTHSSI-----------------SHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           L   LTH S                  + + +E+ E L  LG+ +LGL  S  L   +  
Sbjct: 64  LVTCLTHPSFVPAAQQDSELQAGPGSAAPATKETNELLATLGNSLLGLFASEHLSTIYPY 123

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDL--------------------ASFIRVSS---- 101
                L     + V   +C  VAR L +                       +R S     
Sbjct: 124 LPTKPLQQAVTAYVGPASCLSVARSLGVAVQGGGNTGLPGLGAGSSSAGVAVRWSKTAVA 183

Query: 102 --------DLRKDV-------CSFMTSIQ-------------------ADVVESLIAALY 127
                                  F   I+                   A  V + +  +Y
Sbjct: 184 ERNWRDTRGEAAQGPLKVPVGKRFRKYIKQEDQDVTVQARRETHEDVVASAVRAFVGLIY 243

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWA-------------HAKFGVTPE 174
            + GI  A  F   ++  RAL            +Q  +              +      +
Sbjct: 244 QEQGIHAARAFTHAHFLSRALDLPSLIT-PINPMQVLSSVVSSHLSAAGVPASSSHTLIQ 302

Query: 175 YKVTFRSGPDH-DPRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLK 221
            ++   +G     P F + + +  G+  A+G   SK  A+  AA   L+
Sbjct: 303 PRLLASTGTASQAPLFLIGLFLPSGIKLAEGHGSSKAMAQHRAAVNALQ 351


>gi|18640118|ref|NP_570192.1| SPV032 putative PKR inhibitor host range protein [Swinepox virus]
 gi|18448525|gb|AAL69771.1| SPV032 putative PKR inhibitor host range protein [Swinepox virus]
          Length = 177

 Score = 62.8 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            ++  T L E+            +   SG  H P FT  + +SG+    G   +K+ A+Q
Sbjct: 102 NKNPITVLNEYCQITQRDWII-DIIS-SGQSHCPIFTASITVSGIKCKTGKGSTKKEAKQ 159

Query: 214 VAAAEVLK 221
           +AA E + 
Sbjct: 160 IAARETMN 167


>gi|170051377|ref|XP_001861735.1| ribonuclease iii [Culex quinquefasciatus]
 gi|167872672|gb|EDS36055.1| ribonuclease iii [Culex quinquefasciatus]
          Length = 217

 Score = 62.8 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 58/175 (33%), Gaps = 40/175 (22%)

Query: 49  RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVA-RELDLASFIRVSSDLRKDV 107
            +L L  S         A  G  + R  +    E+ S++   +L + S+   S+      
Sbjct: 20  SVLPLTASVTGHVRGPRACCGLATYRAAAFQEDESLSKIWSDDLGITSYAVYSNK----K 75

Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHA 167
               T  +AD++E+ + ALY+D G+  A                                
Sbjct: 76  ADLKTKDRADLLEAFLGALYVDKGLNTAKRSAT--------------------------- 108

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                    V   +GP +   +T+ V   G   A     S + A+  AA + L+ 
Sbjct: 109 --------CVIECNGPTNTRVYTMAVYFRGKHLACSNGHSIQEAKINAAKQALEN 155


>gi|145349136|ref|XP_001418996.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579226|gb|ABO97289.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 656

 Score = 62.8 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 75/202 (37%), Gaps = 33/202 (16%)

Query: 34  HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL 93
           H      E    +GD+I G  +   +  +      GE + +++ + S  + +Q+  E  L
Sbjct: 382 HVSTSDVEMHALIGDKIFGAALLEEIVGNRLCKDTGEATRQYSEVASNASMAQLVSEC-L 440

Query: 94  ASFIRVSSD-LRKDVCSFMTSIQADVVESLIAALYL----DGGIEVAGTFVDKYWKQRAL 148
              ++   +       + +            AA+Y+     GG +     + K++    +
Sbjct: 441 PQHVQGGREVEEHSAGTLVE-----------AAVYMVNQMAGGPQAVQQ-LAKWFVYNVV 488

Query: 149 KSGKFRR---DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP----- 200
             GK +R   + K  + E      G T  +++      DH+P F         AP     
Sbjct: 489 VEGKKQRRFTNPKGLIIEL----NGHTMSHRIEGT--ADHEPAFQARCVWPKEAPREQQR 542

Query: 201 -AQGMDCSKRAAEQVAAAEVLK 221
               +  SK+ AE  AA E+L+
Sbjct: 543 ETTAIGKSKKEAEANAAKEMLE 564


>gi|328852770|gb|EGG01913.1| hypothetical protein MELLADRAFT_66687 [Melampsora larici-populina
           98AG31]
          Length = 460

 Score = 62.4 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 51/126 (40%), Gaps = 19/126 (15%)

Query: 10  EKRIGYAFANRSLLEKALT--HSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
           ++++ Y F N +LL KALT  H             LE++GD +L +  +  +  H    K
Sbjct: 333 QEKLNYRFRNPNLLRKALTLDHPEFRL--------LEWIGDSVLDVWAAMEITKHRKGHK 384

Query: 68  EGELSVRFNSLVSAETCSQ-VARELDLASFIRVSSDLRKDVCSFMTSI-QADVVESLIAA 125
             + + RF  L + E   Q V         I            F+  +     VE+LI A
Sbjct: 385 VSKANERFMDLTNNEFLGQRVTDSFKSLKHII-------QKPRFLGKLWLGKFVEALIGA 437

Query: 126 LYLDGG 131
           ++LD  
Sbjct: 438 VFLDRN 443


>gi|159163524|pdb|1X49|A Chain A, Solution Structure Of The First Dsrm Domain In Interferon-
           Induced, Double-Stranded Rna-Activated Protein Kinase
          Length = 97

 Score = 62.4 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           +L ++     GV   YK    SGP HD RFT  V I      +    SK+ A   AA   
Sbjct: 19  KLNKYRQ-MHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLA 77


>gi|313233857|emb|CBY10026.1| unnamed protein product [Oikopleura dioica]
          Length = 500

 Score = 62.4 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 5/65 (7%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           + LQE    +    P YK    +GP     FT+V +I  ++  +    SK+ A+  AA+ 
Sbjct: 228 SVLQEMMQKRGASVPIYKTKGGAGPP----FTIVCQIDDMS-TEATGNSKKEAKHRAASS 282

Query: 219 VLKRE 223
           +LK  
Sbjct: 283 MLKNL 287



 Score = 52.8 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 4/76 (5%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCS 207
           K+ +  R   +ELQE+   +    P Y      G  +H   FT    I  L      +  
Sbjct: 402 KNHEVNRHPVSELQEYLQQRHISAPAYFFIPHDGGYEHLKEFTCKCTIDELNLQV-KERR 460

Query: 208 K--RAAEQVAAAEVLK 221
           K  + A + AA ++LK
Sbjct: 461 KNQKIARKAAATQMLK 476



 Score = 43.5 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 27/74 (36%), Gaps = 8/74 (10%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQV 214
           +    LQE        TPEYK    SG +  P F+  V +             K  A+  
Sbjct: 324 NPVGLLQELMQKNGLQTPEYK----SGGEACPPFSWHVRLPHTGQSCTASGNKKAEAKGN 379

Query: 215 AAAEV---LKREGI 225
           AA  +   LK  GI
Sbjct: 380 AARRMIAQLKEHGI 393


>gi|242775084|ref|XP_002478573.1| 60S ribosomal protein L3 [Talaromyces stipitatus ATCC 10500]
 gi|218722192|gb|EED21610.1| 60S ribosomal protein L3 [Talaromyces stipitatus ATCC 10500]
          Length = 384

 Score = 62.4 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 69/270 (25%), Gaps = 75/270 (27%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           L + L  +S       +   L  LG  +L    +  +   +       +     + +   
Sbjct: 83  LARTLRDASADPHPHFNNASLAVLGHDLLAQYTTEHIICTYPRLPMTVIYAAMYAYIGPR 142

Query: 83  TCSQVARELD--------------LASFIRVSSDLR---------KDVCSFMTSIQADVV 119
           T + +A E                L  F RV              +    +  SI + VV
Sbjct: 143 TLATIAGEWGVELAAVPGPEVDPGLLQFKRVQPGTEIVQDPKKTTRPNTHWRKSIASSVV 202

Query: 120 E-----------------------------------------SLIAALYLDGGIEVAGTF 138
                                                     +++  +YL  G   A  F
Sbjct: 203 HGDIFGEPDLKTKNPKYVRPQLPDLESLPGVTAEKATSTFVQAVVGGIYLHAGRPAAKRF 262

Query: 139 VDKYWKQRALKSGKFR------RDAKTELQEWAHAKFGVTPEYKVTFRSGPDH-DPRFTV 191
             ++   R L   K        RD    L    H +    P  K+   +G     P F V
Sbjct: 263 FKEHIVSRHLDMSKLFSFTQPARD----LATLCHRENIEPPVAKIISETGRHSRHPVFNV 318

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V        +G   S   A   AA   LK
Sbjct: 319 GVFSGQDKLGEGSGASLIEARTRAAVAALK 348


>gi|297818244|ref|XP_002877005.1| dsRNA-binding protein 3 [Arabidopsis lyrata subsp. lyrata]
 gi|297322843|gb|EFH53264.1| dsRNA-binding protein 3 [Arabidopsis lyrata subsp. lyrata]
          Length = 356

 Score = 62.4 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  LQE AH      P Y    RSGP H P F+  VE++G++       +K+ AE+ AA
Sbjct: 88  YKNLLQETAHRAGLDLPVYTSV-RSGPGHIPTFSCTVELAGMSFNGESAKTKKQAEKNAA 146

Query: 217 AEV---LKRE 223
                 L++ 
Sbjct: 147 IAAWFSLRKM 156



 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 27/71 (38%), Gaps = 8/71 (11%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK----RAAE 212
            K +LQE A       P Y  T R GPDH PRF   V  +G         +     R AE
Sbjct: 2   YKNQLQELAQRSCFNLPSYTCT-REGPDHAPRFKASVNFNGEIFES---PTYCSTLRQAE 57

Query: 213 QVAAAEVLKRE 223
             AA   L   
Sbjct: 58  HSAAEVALSAL 68


>gi|291241464|ref|XP_002740631.1| PREDICTED: RNA-specific adenosine deaminase B1-like [Saccoglossus
           kowalevskii]
          Length = 713

 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     ++K   +SGP H P F + VE++G    +G+  +K+ A+  AA
Sbjct: 94  PKNALMQL--NEIRPGLQFKFVSQSGPVHAPTFVMSVEVNGQ-MFEGIGTTKKKAKLQAA 150

Query: 217 AEVLK 221
            + L+
Sbjct: 151 EKALR 155



 Score = 40.1 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 6/60 (10%)

Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           L S    ++    L E          +Y+    +G  H   F + V I G     G   +
Sbjct: 244 LSSPPQGKNPIMLLNEL-----RPGLKYEFVSETGESHAKNFVMSVVIDGQN-FTGSARN 297


>gi|310689634|pdb|2L3J|A Chain A, The Solution Structure Of The Adar2 Dsrbm-Rna Complex
           Reveals A Sequence-Specific Read Out Of The Minor Groove
          Length = 236

 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 6   PKNALMQL--NEIKPGLQYMLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 62

Query: 217 AEVLK 221
            + L+
Sbjct: 63  EKALR 67



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +     +Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 169 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 220


>gi|310689632|pdb|2L3C|A Chain A, Solution Structure Of Adar2 Dsrbm1 Bound To Lsl Rna
          Length = 74

 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 6   PKNALMQL--NEIKPGLQYMLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 62

Query: 217 AEVLK 221
            + L+
Sbjct: 63  EKALR 67


>gi|161377407|ref|NP_037026.2| double-stranded RNA-specific editase 1 isoform 1 [Rattus
           norvegicus]
 gi|149043657|gb|EDL97108.1| adenosine deaminase, RNA-specific, B1, isoform CRA_b [Rattus
           norvegicus]
          Length = 711

 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 79  PKNALMQL--NEIKPGLQYMLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135

Query: 217 AEVLK 221
            + L+
Sbjct: 136 EKALR 140



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +     +Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293


>gi|161377409|ref|NP_001104525.1| double-stranded RNA-specific editase 1 isoform 2 [Rattus
           norvegicus]
 gi|149043658|gb|EDL97109.1| adenosine deaminase, RNA-specific, B1, isoform CRA_c [Rattus
           norvegicus]
          Length = 701

 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 79  PKNALMQL--NEIKPGLQYMLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135

Query: 217 AEVLK 221
            + L+
Sbjct: 136 EKALR 140



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +     +Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293


>gi|161377411|ref|NP_001104526.1| double-stranded RNA-specific editase 1 isoform 3 [Rattus
           norvegicus]
 gi|149043659|gb|EDL97110.1| adenosine deaminase, RNA-specific, B1, isoform CRA_d [Rattus
           norvegicus]
          Length = 687

 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 55  PKNALMQL--NEIKPGLQYMLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 111

Query: 217 AEVLK 221
            + L+
Sbjct: 112 EKALR 116



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +     +Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 218 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 269


>gi|161377413|ref|NP_001104527.1| double-stranded RNA-specific editase 1 isoform 4 [Rattus
           norvegicus]
 gi|149043660|gb|EDL97111.1| adenosine deaminase, RNA-specific, B1, isoform CRA_e [Rattus
           norvegicus]
          Length = 677

 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 55  PKNALMQL--NEIKPGLQYMLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 111

Query: 217 AEVLK 221
            + L+
Sbjct: 112 EKALR 116



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +     +Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 218 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 269


>gi|149043656|gb|EDL97107.1| adenosine deaminase, RNA-specific, B1, isoform CRA_a [Rattus
           norvegicus]
          Length = 695

 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 73  PKNALMQL--NEIKPGLQYMLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 129

Query: 217 AEVLK 221
            + L+
Sbjct: 130 EKALR 134



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +     +Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 236 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 287


>gi|148699868|gb|EDL31815.1| adenosine deaminase, RNA-specific, B1, isoform CRA_f [Mus musculus]
          Length = 707

 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 85  PKNALMQL--NEIKPGLQYMLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 141

Query: 217 AEVLK 221
            + L+
Sbjct: 142 EKALR 146



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +     +Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 248 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 299


>gi|148699867|gb|EDL31814.1| adenosine deaminase, RNA-specific, B1, isoform CRA_e [Mus musculus]
          Length = 717

 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 85  PKNALMQL--NEIKPGLQYMLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 141

Query: 217 AEVLK 221
            + L+
Sbjct: 142 EKALR 146



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +     +Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 248 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 299


>gi|93278801|pdb|2B7T|A Chain A, Structure Of Adar2 Dsrbm1
          Length = 73

 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 6   PKNALMQL--NEIKPGLQYMLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 62

Query: 217 AEVLK 221
            + L+
Sbjct: 63  EKALR 67


>gi|13272337|gb|AAK17102.1|AF291049_1 RNA adenosine deaminase 2 [Mus musculus]
          Length = 701

 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 79  PKNALMQL--NEIKPGLQYMLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135

Query: 217 AEVLK 221
            + L+
Sbjct: 136 EKALR 140



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +     +Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293


>gi|67625743|ref|NP_570965.2| double-stranded RNA-specific editase 1 isoform 1 [Mus musculus]
 gi|15529488|gb|AAL01301.1|AF403106_1 adenosine deaminase [Mus musculus]
 gi|148699869|gb|EDL31816.1| adenosine deaminase, RNA-specific, B1, isoform CRA_g [Mus musculus]
 gi|183396845|gb|AAI65982.1| Adenosine deaminase, RNA-specific, B1 [synthetic construct]
          Length = 701

 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 79  PKNALMQL--NEIKPGLQYMLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135

Query: 217 AEVLK 221
            + L+
Sbjct: 136 EKALR 140



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +     +Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293


>gi|15529494|gb|AAL01304.1|AF403109_1 adenosine deaminase [Mus musculus]
 gi|148699864|gb|EDL31811.1| adenosine deaminase, RNA-specific, B1, isoform CRA_b [Mus musculus]
          Length = 687

 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 55  PKNALMQL--NEIKPGLQYMLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 111

Query: 217 AEVLK 221
            + L+
Sbjct: 112 EKALR 116



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +     +Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 218 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 269


>gi|15529492|gb|AAL01303.1|AF403108_1 adenosine deaminase [Mus musculus]
 gi|148699865|gb|EDL31812.1| adenosine deaminase, RNA-specific, B1, isoform CRA_c [Mus musculus]
          Length = 677

 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 55  PKNALMQL--NEIKPGLQYMLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 111

Query: 217 AEVLK 221
            + L+
Sbjct: 112 EKALR 116



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +     +Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 218 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 269


>gi|21954727|gb|AAM83099.1|AF525421_1 adenosine deaminase ADAR2 [Mus musculus]
 gi|27357040|gb|AAN86546.1| adenosine deaminase [Mus musculus]
 gi|148699863|gb|EDL31810.1| adenosine deaminase, RNA-specific, B1, isoform CRA_a [Mus musculus]
          Length = 695

 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 73  PKNALMQL--NEIKPGLQYMLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 129

Query: 217 AEVLK 221
            + L+
Sbjct: 130 EKALR 134



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +     +Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 236 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 287


>gi|74209845|dbj|BAE23623.1| unnamed protein product [Mus musculus]
          Length = 376

 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 79  PKNALMQL--NEIKPGLQYMLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135

Query: 217 AEVLK 221
            + L+
Sbjct: 136 EKALR 140



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +     +Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293


>gi|1710075|sp|P51400|RED1_RAT RecName: Full=Double-stranded RNA-specific editase 1; AltName:
           Full=RNA-editing deaminase 1; AltName: Full=RNA-editing
           enzyme 1; AltName: Full=dsRNA adenosine deaminase
 gi|1177853|gb|AAA96755.1| double-stranded RNA-specific editase [Rattus norvegicus]
 gi|1586827|prf||2204394A RNA-editing enzyme
          Length = 711

 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 79  PKNALMQL--NEIKPGLQYMLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135

Query: 217 AEVLK 221
            + L+
Sbjct: 136 EKALR 140



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +     +Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293


>gi|67625747|ref|NP_001020008.1| double-stranded RNA-specific editase 1 isoform 2 [Mus musculus]
 gi|68684375|sp|Q91ZS8|RED1_MOUSE RecName: Full=Double-stranded RNA-specific editase 1; AltName:
           Full=RNA-editing deaminase 1; AltName: Full=RNA-editing
           enzyme 1; AltName: Full=dsRNA adenosine deaminase
 gi|15529490|gb|AAL01302.1|AF403107_1 adenosine deaminase [Mus musculus]
 gi|74181126|dbj|BAE27830.1| unnamed protein product [Mus musculus]
 gi|74202480|dbj|BAE24831.1| unnamed protein product [Mus musculus]
 gi|148699866|gb|EDL31813.1| adenosine deaminase, RNA-specific, B1, isoform CRA_d [Mus musculus]
          Length = 711

 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 79  PKNALMQL--NEIKPGLQYMLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135

Query: 217 AEVLK 221
            + L+
Sbjct: 136 EKALR 140



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +     +Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 242 ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293


>gi|260835858|ref|XP_002612924.1| hypothetical protein BRAFLDRAFT_227842 [Branchiostoma floridae]
 gi|229298306|gb|EEN68933.1| hypothetical protein BRAFLDRAFT_227842 [Branchiostoma floridae]
          Length = 280

 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     ++K   +SGP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 38  PKNALMQL--NELRPGLQFKFVSQSGPVHAPEFIMSVEVNGQT-FEGRGGTKKKAKLHAA 94

Query: 217 AEVLK 221
            + L+
Sbjct: 95  EQALR 99



 Score = 42.0 bits (98), Expect = 0.062,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 1/40 (2%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           +     +Y+    +G  H   F + V I G    +G   +
Sbjct: 194 ELRPGLKYEFVSETGESHAKNFVMAVTIDGQT-FEGSGRN 232


>gi|1657636|gb|AAB18134.1| RNA adenosine deaminase [Homo sapiens]
          Length = 711

 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 79  PKNALMQL--DEIKPGLQYMLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 135

Query: 217 AEVLK 221
            + L+
Sbjct: 136 EKALR 140



 Score = 58.5 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 49/168 (29%), Gaps = 15/168 (8%)

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           +   F  F +A E  L++     V+ +  S  A   D    +   + L     S      
Sbjct: 138 ALRYFVQFPNASEAHLAMGRTLSVNTDFTSDQA---DFPDTLF--NGLETPDKSEPPFYV 192

Query: 116 ADVVE---SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT 172
               +   S    + L     V  +                 ++    L E         
Sbjct: 193 GSNGDDSFSSSGDVSLSAS-PVPASLTQPPLPIPPPFPPSSGKNPVMILNEL-----RPG 246

Query: 173 PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            +Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 247 LKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 293


>gi|79420704|ref|NP_189329.3| DRB3 (dsRNA-binding protein 3); RNA binding / double-stranded RNA
           binding [Arabidopsis thaliana]
 gi|145322916|ref|NP_001030779.2| DRB3 (dsRNA-binding protein 3); RNA binding / double-stranded RNA
           binding [Arabidopsis thaliana]
 gi|75273549|sp|Q9LJF5|DRB3_ARATH RecName: Full=Double-stranded RNA-binding protein 3; AltName:
           Full=dsRNA-binding protein 3; Short=AtDRB3
 gi|11994159|dbj|BAB01188.1| unnamed protein product [Arabidopsis thaliana]
 gi|45773934|gb|AAS76771.1| At3g26932 [Arabidopsis thaliana]
 gi|62321583|dbj|BAD95129.1| putative protein [Arabidopsis thaliana]
 gi|332643724|gb|AEE77245.1| dsRNA-binding protein 3 [Arabidopsis thaliana]
 gi|332643725|gb|AEE77246.1| dsRNA-binding protein 3 [Arabidopsis thaliana]
          Length = 359

 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  LQE AH      P Y    RSGP H P F+  VE++G++       +K+ AE+ AA
Sbjct: 88  YKNLLQETAHRAGLDLPVYTSV-RSGPGHIPTFSCTVELAGMSFNGESAKTKKQAEKNAA 146

Query: 217 AEV---LKRE 223
                 L++ 
Sbjct: 147 IAAWFSLRKM 156



 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK-RAAEQVA 215
            K +LQE A       P Y  T R GPDH PRF   V  +G        CS  R AE  A
Sbjct: 2   YKNQLQELAQRSCFSLPSYTCT-REGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60

Query: 216 AAEVLKRE 223
           A   L   
Sbjct: 61  AEVALSAL 68


>gi|195036694|ref|XP_001989803.1| GH18997 [Drosophila grimshawi]
 gi|193893999|gb|EDV92865.1| GH18997 [Drosophila grimshawi]
          Length = 321

 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 46/237 (19%), Positives = 75/237 (31%), Gaps = 39/237 (16%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQE---------------SYERLEFLGDRILGLLI 55
           KR+   F    LL+ A T  + +H  QE                  +L   G  I    I
Sbjct: 72  KRLNEDFQ-LPLLQTAFTQRTYAHQEQERQRKLGIAEADLQMGDNSQLATKGVHIAKAYI 130

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
              L N              + L+S ET + V   L     I              +   
Sbjct: 131 EAYLQNALPKVPPVGQQAIASYLLSTETLAHVCTHLGAKELIF------STEYPPSSETL 184

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYW-----KQRALKSGKFRRDAKTELQ---EWAHA 167
           A  + ++I AL    G+E A  FV  +      ++  L+     +     LQ   E    
Sbjct: 185 AQTLHAIIGALSDSSGVERAFLFVRDFICTQLNQKDLLEIWTPEQ----PLQLLGEICTQ 240

Query: 168 KFGVTPEYKVTFRSGPDHDPR---FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           K    PE ++    G   +     + V +  +     +G     + A + AA + L+
Sbjct: 241 KKLGEPEPRLLGDCGK--NTVLAAYHVGIYANRQLLGKGFGEDLQMATETAAIDALQ 295


>gi|332220545|ref|XP_003259416.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
           3 [Nomascus leucogenys]
          Length = 1234

 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E+A      T E+ +  +SGP H+PRF   V I+G         SK+ A+Q 
Sbjct: 555 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 613

Query: 215 AAAEVL 220
           AA + +
Sbjct: 614 AAMKAM 619



 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+
Sbjct: 666 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 724

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 725 AAEEAMKAL 733



 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+  +Q AA   L
Sbjct: 765 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 823

Query: 221 K 221
           +
Sbjct: 824 R 824


>gi|332220543|ref|XP_003259415.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
           2 [Nomascus leucogenys]
          Length = 1253

 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E+A      T E+ +  +SGP H+PRF   V I+G         SK+ A+Q 
Sbjct: 555 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 613

Query: 215 AAAEVL 220
           AA + +
Sbjct: 614 AAMKAM 619



 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+
Sbjct: 666 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 724

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 725 AAEEAMKAL 733



 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+  +Q AA   L
Sbjct: 784 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 842

Query: 221 K 221
           +
Sbjct: 843 R 843


>gi|332220541|ref|XP_003259414.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
           1 [Nomascus leucogenys]
          Length = 1279

 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E+A      T E+ +  +SGP H+PRF   V I+G         SK+ A+Q 
Sbjct: 555 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 613

Query: 215 AAAEVL 220
           AA + +
Sbjct: 614 AAMKAM 619



 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+
Sbjct: 666 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 724

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 725 AAEEAMKAL 733



 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+  +Q AA   L
Sbjct: 784 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 842

Query: 221 K 221
           +
Sbjct: 843 R 843


>gi|297663358|ref|XP_002810142.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like
           isoform 1 [Pongo abelii]
          Length = 1226

 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E+A      T E+ +  +SGP H+PRF   V I+G         SK+ A+Q 
Sbjct: 502 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 560

Query: 215 AAAEVL 220
           AA + +
Sbjct: 561 AAMKAM 566



 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+
Sbjct: 613 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 671

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 672 AAEEAMKAL 680



 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+  +Q AA   L
Sbjct: 731 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 789

Query: 221 K 221
           +
Sbjct: 790 R 790


>gi|297280147|ref|XP_002801844.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like
           isoform 3 [Macaca mulatta]
          Length = 1180

 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E+A      T E+ +  +SGP H+PRF   V I+G         SK+ A+Q 
Sbjct: 501 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 559

Query: 215 AAAEVL 220
           AA + +
Sbjct: 560 AAMKAM 565



 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+
Sbjct: 612 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 670

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 671 AAEEAMKAL 679



 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+  +Q AA   L
Sbjct: 711 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 769

Query: 221 K 221
           +
Sbjct: 770 R 770


>gi|297280145|ref|XP_001111902.2| PREDICTED: double-stranded RNA-specific adenosine deaminase-like
           isoform 1 [Macaca mulatta]
          Length = 1199

 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E+A      T E+ +  +SGP H+PRF   V I+G         SK+ A+Q 
Sbjct: 501 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 559

Query: 215 AAAEVL 220
           AA + +
Sbjct: 560 AAMKAM 565



 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+
Sbjct: 612 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 670

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 671 AAEEAMKAL 679



 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+  +Q AA   L
Sbjct: 730 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 788

Query: 221 K 221
           +
Sbjct: 789 R 789


>gi|297280143|ref|XP_002801843.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like
           isoform 2 [Macaca mulatta]
          Length = 1225

 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E+A      T E+ +  +SGP H+PRF   V I+G         SK+ A+Q 
Sbjct: 501 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 559

Query: 215 AAAEVL 220
           AA + +
Sbjct: 560 AAMKAM 565



 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+
Sbjct: 612 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 670

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 671 AAEEAMKAL 679



 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+  +Q AA   L
Sbjct: 730 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 788

Query: 221 K 221
           +
Sbjct: 789 R 789


>gi|62089368|dbj|BAD93128.1| adenosine deaminase, RNA-specific isoform ADAR-a variant [Homo
           sapiens]
          Length = 1244

 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E+A      T E+ +  +SGP H+PRF   V I+G         SK+ A+Q 
Sbjct: 520 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 578

Query: 215 AAAEVL 220
           AA + +
Sbjct: 579 AAMKAM 584



 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+
Sbjct: 631 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 689

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 690 AAEEAMKAL 698



 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+  +Q AA   L
Sbjct: 749 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 807

Query: 221 K 221
           +
Sbjct: 808 R 808


>gi|34364836|emb|CAE45853.1| hypothetical protein [Homo sapiens]
          Length = 1278

 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E+A      T E+ +  +SGP H+PRF   V I+G         SK+ A+Q 
Sbjct: 533 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 591

Query: 215 AAAEVL 220
           AA + +
Sbjct: 592 AAMKAM 597



 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+
Sbjct: 644 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 702

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 703 AAEEAMKAL 711



 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+  +Q AA   L
Sbjct: 762 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 820

Query: 221 K 221
           +
Sbjct: 821 R 821


>gi|31874703|emb|CAD98075.1| hypothetical protein [Homo sapiens]
          Length = 1257

 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E+A      T E+ +  +SGP H+PRF   V I+G         SK+ A+Q 
Sbjct: 533 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 591

Query: 215 AAAEVL 220
           AA + +
Sbjct: 592 AAMKAM 597



 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+
Sbjct: 644 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 702

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 703 AAEEAMKAL 711



 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+  +Q AA   L
Sbjct: 762 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 820

Query: 221 K 221
           +
Sbjct: 821 R 821


>gi|297663360|ref|XP_002810143.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like
           isoform 2 [Pongo abelii]
          Length = 1200

 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E+A      T E+ +  +SGP H+PRF   V I+G         SK+ A+Q 
Sbjct: 502 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 560

Query: 215 AAAEVL 220
           AA + +
Sbjct: 561 AAMKAM 566



 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+
Sbjct: 613 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 671

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 672 AAEEAMKAL 680



 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+  +Q AA   L
Sbjct: 731 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 789

Query: 221 K 221
           +
Sbjct: 790 R 790


>gi|114326369|ref|NP_001041600.1| interferon-induced, double-stranded RNA-activated protein kinase
           [Canis lupus familiaris]
 gi|62002572|gb|AAX58777.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Canis
           lupus familiaris]
          Length = 532

 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 1/62 (1%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           EL  +      V  +Y    + GP H+ RFT    I      +    SK+ A   AA   
Sbjct: 13  ELNIFCQKHRKVL-KYNELSKEGPAHNLRFTFQAIIDEREYPEAEGKSKKEARNTAAKLA 71

Query: 220 LK 221
           L+
Sbjct: 72  LE 73



 Score = 40.4 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 6/61 (9%)

Query: 164 WAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            A  +   +  Y+       GP+   RF    +I       G   +K+ A+ +AA    +
Sbjct: 111 LAQKEQL-SVNYEQWELKDCGPE---RFHCRCKIGQKEYDIGKGATKQEAKHLAAKFAYE 166

Query: 222 R 222
           +
Sbjct: 167 Q 167


>gi|149742267|ref|XP_001489941.1| PREDICTED: similar to RNA-specific adenosine deaminase B1 [Equus
           caballus]
          Length = 833

 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y +  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 211 PKNALMQL--NEIKPGLQYMLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAA 267

Query: 217 AEVLK 221
            + L+
Sbjct: 268 EKALR 272



 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 47/162 (29%), Gaps = 15/162 (9%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE- 120
            F +A E  L++      + +  S  A   D    +   +       S +        + 
Sbjct: 276 QFPNASEAHLAMGRTLSANTDFTSDQA---DFPDTLF--NGFETPDRSDVPFYLGSNGDD 330

Query: 121 --SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
             S    L L     V  + V               ++    L E          +Y   
Sbjct: 331 SFSSSGDLSLSAS-PVPASLVQPPLPVPPPFPPPSGKNPVMILNEL-----RPGLKYDFL 384

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 385 SESGESHAKNFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 425


>gi|21430030|gb|AAM50693.1| GM01981p [Drosophila melanogaster]
          Length = 489

 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEV 219
           L E       + P+YK+    GP H+  F   VEI+G          +K+ A+  AAA  
Sbjct: 420 LNELTSKNKWMPPQYKLRQDIGPAHNRSFLFSVEINGQTFTPDRGSNNKKEAKLNAAALC 479

Query: 220 LKREGIW 226
           L+  GI 
Sbjct: 480 LRSLGIL 486


>gi|25009833|gb|AAN71087.1| AT18855p [Drosophila melanogaster]
          Length = 886

 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEV 219
           L E       + P+YK+    GP H+  F   VEI+G          +K+ A+  AAA  
Sbjct: 817 LNELTSKNKWMPPQYKLRQDIGPAHNRSFLFSVEINGQTFTPDRGSNNKKEAKLNAAALC 876

Query: 220 LKREGIW 226
           L+  GI 
Sbjct: 877 LRSLGIL 883


>gi|24645429|ref|NP_649914.1| CG8273 [Drosophila melanogaster]
 gi|7299212|gb|AAF54409.1| CG8273 [Drosophila melanogaster]
          Length = 874

 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEV 219
           L E       + P+YK+    GP H+  F   VEI+G          +K+ A+  AAA  
Sbjct: 805 LNELTSKNKWMPPQYKLRQDIGPAHNRSFLFSVEINGQTFTPDRGSNNKKEAKLNAAALC 864

Query: 220 LKREGIW 226
           L+  GI 
Sbjct: 865 LRSLGIL 871


>gi|2326526|emb|CAA55968.1| IFI-4 [Homo sapiens]
          Length = 1226

 Score = 62.4 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E+A      T E+ +  +SGP H+PRF   V I+G         SK+ A+Q 
Sbjct: 502 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 560

Query: 215 AAAEVL 220
           AA + +
Sbjct: 561 AAMKAM 566



 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+
Sbjct: 613 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 671

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 672 AAEEAMKAL 680



 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+  +Q AA   L
Sbjct: 731 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 789

Query: 221 K 221
           +
Sbjct: 790 R 790


>gi|297663362|ref|XP_002810144.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like
           isoform 3 [Pongo abelii]
          Length = 1181

 Score = 62.0 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E+A      T E+ +  +SGP H+PRF   V I+G         SK+ A+Q 
Sbjct: 502 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 560

Query: 215 AAAEVL 220
           AA + +
Sbjct: 561 AAMKAM 566



 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+
Sbjct: 613 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 671

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 672 AAEEAMKAL 680



 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+  +Q AA   L
Sbjct: 712 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 770

Query: 221 K 221
           +
Sbjct: 771 R 771


>gi|221044884|dbj|BAH14119.1| unnamed protein product [Homo sapiens]
          Length = 970

 Score = 62.0 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E+A      T E+ +  +SGP H+PRF   V I+G         SK+ A+Q 
Sbjct: 502 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 560

Query: 215 AAAEVL 220
           AA + +
Sbjct: 561 AAMKAM 566



 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+
Sbjct: 613 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 671

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 672 AAEEAMKAL 680



 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+  +Q AA   L
Sbjct: 731 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 789

Query: 221 K 221
           +
Sbjct: 790 R 790


>gi|70166852|ref|NP_001102.2| double-stranded RNA-specific adenosine deaminase isoform a [Homo
           sapiens]
 gi|577170|gb|AAB06697.1| double-stranded RNA adenosine deaminase [Homo sapiens]
 gi|23398522|gb|AAH38227.1| Adenosine deaminase, RNA-specific [Homo sapiens]
 gi|119573571|gb|EAW53186.1| adenosine deaminase, RNA-specific, isoform CRA_d [Homo sapiens]
 gi|157928608|gb|ABW03600.1| adenosine deaminase, RNA-specific [synthetic construct]
 gi|157929250|gb|ABW03910.1| adenosine deaminase, RNA-specific [synthetic construct]
          Length = 1226

 Score = 62.0 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E+A      T E+ +  +SGP H+PRF   V I+G         SK+ A+Q 
Sbjct: 502 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 560

Query: 215 AAAEVL 220
           AA + +
Sbjct: 561 AAMKAM 566



 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+
Sbjct: 613 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 671

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 672 AAEEAMKAL 680



 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+  +Q AA   L
Sbjct: 731 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 789

Query: 221 K 221
           +
Sbjct: 790 R 790


>gi|915284|gb|AAC13782.1| p136 [Homo sapiens]
 gi|2795791|gb|AAB97118.1| RNA adenosine deaminase [Homo sapiens]
          Length = 1226

 Score = 62.0 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E+A      T E+ +  +SGP H+PRF   V I+G         SK+ A+Q 
Sbjct: 502 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 560

Query: 215 AAAEVL 220
           AA + +
Sbjct: 561 AAMKAM 566



 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+
Sbjct: 613 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 671

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 672 AAEEAMKAL 680



 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+  +Q AA   L
Sbjct: 731 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 789

Query: 221 K 221
           +
Sbjct: 790 R 790


>gi|313104303|sp|P55265|DSRAD_HUMAN RecName: Full=Double-stranded RNA-specific adenosine deaminase;
           Short=DRADA; AltName: Full=136 kDa double-stranded
           RNA-binding protein; Short=p136; AltName:
           Full=Interferon-inducible protein 4; Short=IFI-4;
           AltName: Full=K88DSRBP
 gi|55666219|emb|CAH71908.1| adenosine deaminase, RNA-specific [Homo sapiens]
 gi|55960913|emb|CAI16185.1| adenosine deaminase, RNA-specific [Homo sapiens]
 gi|55961273|emb|CAI17376.1| adenosine deaminase, RNA-specific [Homo sapiens]
          Length = 1226

 Score = 62.0 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E+A      T E+ +  +SGP H+PRF   V I+G         SK+ A+Q 
Sbjct: 502 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 560

Query: 215 AAAEVL 220
           AA + +
Sbjct: 561 AAMKAM 566



 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+
Sbjct: 613 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 671

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 672 AAEEAMKAL 680



 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+  +Q AA   L
Sbjct: 731 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 789

Query: 221 K 221
           +
Sbjct: 790 R 790


>gi|12711291|emb|CAA67170.1| dsRNA adenosine deaminase [Homo sapiens]
          Length = 1221

 Score = 62.0 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E+A      T E+ +  +SGP H+PRF   V I+G         SK+ A+Q 
Sbjct: 497 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 555

Query: 215 AAAEVL 220
           AA + +
Sbjct: 556 AAMKAM 561



 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+
Sbjct: 608 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 666

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 667 AAEEAMKAL 675



 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+  +Q AA   L
Sbjct: 726 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 784

Query: 221 K 221
           +
Sbjct: 785 R 785


>gi|242014081|ref|XP_002427726.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212512167|gb|EEB14988.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 865

 Score = 62.0 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213
           +   + L E    +   TP++++ F  GPDH   F   V ++G+     +   +K+ A+ 
Sbjct: 789 KHPVSLLNELCSRRKYGTPQFELCFECGPDHKKNFLFKVIVNGVEYTPTIASPNKKQAKV 848

Query: 214 VAAAEVLKREGI 225
            AAA  L+  GI
Sbjct: 849 EAAAVCLRALGI 860


>gi|163916108|gb|AAI57422.1| Double stranded RNA activated protein kinase 1 [Xenopus laevis]
          Length = 578

 Score = 62.0 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           + K +L  +         ++K    +GP HDPRFT  V ++G    +G D  K+ AE +A
Sbjct: 5   NVKGQLISFCTKNGLSY-QFKKVESTGPSHDPRFTFQVFVNGEKLGEGQDKKKKGAEYMA 63

Query: 216 AAEVL 220
           A   L
Sbjct: 64  AKMAL 68



 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 20/65 (30%), Gaps = 2/65 (3%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +    L E             +  R G  H P F     I      +    +K+ A++ A
Sbjct: 118 NYVGILHELCQKH--TLIVTFLDERHGQPHIPEFFCKAVIGKEEFPKAKGKNKKEAKRKA 175

Query: 216 AAEVL 220
           A   L
Sbjct: 176 AHLAL 180


>gi|70998456|ref|XP_753950.1| dsRNA-specific ribonuclease III [Aspergillus fumigatus Af293]
 gi|66851586|gb|EAL91912.1| dsRNA-specific ribonuclease III, putative [Aspergillus fumigatus
           Af293]
 gi|159126317|gb|EDP51433.1| dsRNA-specific ribonuclease III, putative [Aspergillus fumigatus
           A1163]
          Length = 142

 Score = 62.0 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 60/136 (44%), Gaps = 13/136 (9%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +E+ +GY F + +++ +A+         +E   RL FLGD+++GL++  + +    S  +
Sbjct: 11  IEEILGYTFQDPTIVYEAV--------SRERNPRLAFLGDKVVGLILLDIWYRTETSCAQ 62

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G    R     + +  +  A  L L +F       +    +  T      +E+L+AA ++
Sbjct: 63  GY--SRLQDYATNKAMAHQAIRLHLDAFAAPGPS-QSQRATLGTHGLGTEIEALVAATWI 119

Query: 129 DG--GIEVAGTFVDKY 142
           D     EV  + +   
Sbjct: 120 DSRRNFEVVKSVMKNL 135


>gi|70166944|ref|NP_056655.2| double-stranded RNA-specific adenosine deaminase isoform b [Homo
           sapiens]
 gi|119573575|gb|EAW53190.1| adenosine deaminase, RNA-specific, isoform CRA_f [Homo sapiens]
          Length = 1200

 Score = 62.0 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E+A      T E+ +  +SGP H+PRF   V I+G         SK+ A+Q 
Sbjct: 502 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 560

Query: 215 AAAEVL 220
           AA + +
Sbjct: 561 AAMKAM 566



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+
Sbjct: 613 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 671

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 672 AAEEAMKAL 680



 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+  +Q AA   L
Sbjct: 731 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 789

Query: 221 K 221
           +
Sbjct: 790 R 790


>gi|2795789|gb|AAB97116.1| RNA adenosine deaminase [Homo sapiens]
          Length = 1200

 Score = 62.0 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E+A      T E+ +  +SGP H+PRF   V I+G         SK+ A+Q 
Sbjct: 502 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 560

Query: 215 AAAEVL 220
           AA + +
Sbjct: 561 AAMKAM 566



 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+
Sbjct: 613 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 671

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 672 AAEEAMKAL 680



 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+  +Q AA   L
Sbjct: 731 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 789

Query: 221 K 221
           +
Sbjct: 790 R 790


>gi|297663364|ref|XP_002810145.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like
           isoform 4 [Pongo abelii]
 gi|297663366|ref|XP_002810146.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like
           isoform 5 [Pongo abelii]
          Length = 931

 Score = 62.0 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E+A      T E+ +  +SGP H+PRF   V I+G         SK+ A+Q 
Sbjct: 207 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 265

Query: 215 AAAEVL 220
           AA + +
Sbjct: 266 AAMKAM 271



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+
Sbjct: 318 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 376

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 377 AAEEAMKAL 385



 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+  +Q AA   L
Sbjct: 436 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 494

Query: 221 K 221
           +
Sbjct: 495 R 495


>gi|9633665|ref|NP_051743.1| m29L [Myxoma virus]
 gi|6523884|gb|AAF14917.1|AF170726_33 m29L [Myxoma virus]
 gi|170664495|gb|ACB28652.1| m29L [Myxoma virus]
 gi|170664667|gb|ACB28823.1| m29L [recombinant virus 6918VP60-T2]
 gi|301134555|gb|ADK63669.1| m29L [Myxoma virus]
          Length = 115

 Score = 62.0 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKV-TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
           ++  T L E+    F    E+ +   R+G  H P FT VV +SG +       +K+ A +
Sbjct: 41  KNPCTVLNEYCQITFR---EWSINVTRAGQSHSPTFTAVVTVSGYSFKSATGSNKKEARK 97

Query: 214 VAAAEVL 220
            AA E +
Sbjct: 98  NAAKEAM 104


>gi|292609374|ref|XP_694356.4| PREDICTED: hypothetical protein LOC565999 [Danio rerio]
          Length = 1079

 Score = 62.0 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 60/186 (32%), Gaps = 23/186 (12%)

Query: 45   FLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR 104
            F G     +L S  L N    A   +      + VS            +  F+     +R
Sbjct: 890  FTGSTGAQVLSSDELSNSGPQAWIKKDQFLRAAPVSG----------GMGEFL-----MR 934

Query: 105  KDVCSFMTSIQADVVESLIAALYLDGGIE----VAGTFVDKYWKQRALKSGKFRRDAKTE 160
            K              E  +  + +D   +    VA     +      +      +   + 
Sbjct: 935  KMGWRSGEG-LGKHREGTVEPIIIDFKTDRKGLVAEGEKTQKSGNIVVMKDLLGKHPVSA 993

Query: 161  LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG--LAPAQGMDCSKRAAEQVAAAE 218
            L E  + K    PE+ +   SGPDH   F   V ++G    P      +K+ A+ +AA  
Sbjct: 994  LMEMCNKKKWPQPEFVMVHHSGPDHRKNFLFKVVVNGSDYQPQSAS-PNKKHAKAMAATV 1052

Query: 219  VLKREG 224
             L+  G
Sbjct: 1053 ALQAMG 1058


>gi|40788412|dbj|BAD07039.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 397

 Score = 62.0 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 28/73 (38%), Gaps = 8/73 (10%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS----KRAAE 212
            K +LQE A       P   V  R GPDH PRF   V  +G         S     R AE
Sbjct: 25  YKNQLQELAQRSCFSLPS-NVCTREGPDHAPRFKATVTFNGETF---DGPSNCTTLRQAE 80

Query: 213 QVAAAEVLKREGI 225
             AA   L R  +
Sbjct: 81  HAAAEVALARLSL 93



 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            K  LQE AH      P Y    RSGP H P F+  VE++G++ A     +K+ AE+ 
Sbjct: 111 YKNLLQETAHRAGLKLPVYTTV-RSGPGHSPVFSSTVELAGMSFAGDPAKTKKHAEKE 167


>gi|2795790|gb|AAB97117.1| RNA adenosine deaminase [Homo sapiens]
          Length = 1181

 Score = 62.0 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E+A      T E+ +  +SGP H+PRF   V I+G         SK+ A+Q 
Sbjct: 502 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 560

Query: 215 AAAEVL 220
           AA + +
Sbjct: 561 AAMKAM 566



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+
Sbjct: 613 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 671

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 672 AAEEAMKAL 680



 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+  +Q AA   L
Sbjct: 712 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 770

Query: 221 K 221
           +
Sbjct: 771 R 771


>gi|70167032|ref|NP_056656.2| double-stranded RNA-specific adenosine deaminase isoform c [Homo
           sapiens]
 gi|119573570|gb|EAW53185.1| adenosine deaminase, RNA-specific, isoform CRA_c [Homo sapiens]
          Length = 1181

 Score = 62.0 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E+A      T E+ +  +SGP H+PRF   V I+G         SK+ A+Q 
Sbjct: 502 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 560

Query: 215 AAAEVL 220
           AA + +
Sbjct: 561 AAMKAM 566



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+
Sbjct: 613 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 671

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 672 AAEEAMKAL 680



 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+  +Q AA   L
Sbjct: 712 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 770

Query: 221 K 221
           +
Sbjct: 771 R 771


>gi|108802827|gb|ABG21364.1| eukaryotic translation initiation factor 2 alpha kinase 2
           [Mesocricetus auratus]
          Length = 473

 Score = 62.0 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 26/54 (48%)

Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           H K  VT  YK  F +GP HD RFT  V I G    +    +K+ A+  AA   
Sbjct: 17  HQKHRVTITYKHLFTTGPPHDRRFTFQVIIDGEEFPEAEGKTKQEAKNAAAKLA 70



 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 16/37 (43%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            RF     I       G   +K+ A+Q+AA E  ++ 
Sbjct: 122 QRFCYKCIIGLKTYGIGSGATKQEAKQLAAKEAYQKL 158


>gi|332810381|ref|XP_513841.3| PREDICTED: double-stranded RNA-specific adenosine deaminase [Pan
           troglodytes]
          Length = 931

 Score = 62.0 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E+A      T E+ +  +SGP H+PRF   V I+G         SK+ A+Q 
Sbjct: 207 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 265

Query: 215 AAAEVL 220
           AA + +
Sbjct: 266 AAMKAM 271



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+
Sbjct: 318 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 376

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 377 AAEEAMKAL 385



 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+  +Q AA   L
Sbjct: 436 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 494

Query: 221 K 221
           +
Sbjct: 495 R 495


>gi|170095525|ref|XP_001878983.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164646287|gb|EDR10533.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 232

 Score = 62.0 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 59/133 (44%), Gaps = 12/133 (9%)

Query: 20  RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           +S L +A    +     +++ + LEF+GDR++ L  S L+ +    + +  + V    L 
Sbjct: 35  KSRLRRA---QNSVKRSKDNNDLLEFIGDRVVNLACS-LIVDKVKESSDHHMFVGR-VLS 89

Query: 80  SAETCSQVARELDLASFIRVSS--DLRKDVCSFMTSI-----QADVVESLIAALYLDGGI 132
           + +T  ++A +LDL     +    D      +   +I      AD+ ES   A+Y + G 
Sbjct: 90  NNDTLGRIAYQLDLHKSAHLDQRDDFEVTEWNPRHAISPPKALADLFESYAGAVYEEHGW 149

Query: 133 EVAGTFVDKYWKQ 145
           E    ++ + +  
Sbjct: 150 ERVMDWLKQIFTP 162


>gi|195391980|ref|XP_002054637.1| GJ24564 [Drosophila virilis]
 gi|194152723|gb|EDW68157.1| GJ24564 [Drosophila virilis]
          Length = 321

 Score = 62.0 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 77/237 (32%), Gaps = 39/237 (16%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQE---------------SYERLEFLGDRILGLLI 55
           KR+   F    LL+ A T  + +H  QE                  +L   G  I    +
Sbjct: 72  KRLNEEFQ-LPLLQTAFTQRTYAHQEQERQRMLGIAEADLQTADNSQLAAKGAHIAKAYV 130

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
              L +              + L+  ET + V+  L     I              +   
Sbjct: 131 EAYLQHALPKVPSAGHQAIASYLLGTETLAHVSTHLGTKELIF------STEYPPSSETL 184

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYW-----KQRALKSGKFRRDAKTELQ---EWAHA 167
           A  ++++I AL    G+E A  FV  +      ++  L+     +     LQ   E    
Sbjct: 185 AQTLQAIIGALADSSGVERAFLFVRDFICTQLNQKDLLEIWTPEQ----PLQLLSEVCTE 240

Query: 168 KFGVTPEYKVTFRSGPDHDPR---FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +    PE ++    G   +     F V +  +     +G   + + A + AA + L+
Sbjct: 241 RQLGEPEPRLLGDCGK--NTVLAAFQVGIYANRQLLGKGFGENVQTATETAAIDALQ 295


>gi|2326524|emb|CAA55967.1| IFI-4 [Homo sapiens]
 gi|12711292|emb|CAA67169.1| dsRNA adenosine deaminase [Homo sapiens]
          Length = 931

 Score = 62.0 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E+A      T E+ +  +SGP H+PRF   V I+G         SK+ A+Q 
Sbjct: 207 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 265

Query: 215 AAAEVL 220
           AA + +
Sbjct: 266 AAMKAM 271



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+
Sbjct: 318 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 376

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 377 AAEEAMKAL 385



 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+  +Q AA   L
Sbjct: 436 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 494

Query: 221 K 221
           +
Sbjct: 495 R 495


>gi|70167113|ref|NP_001020278.1| double-stranded RNA-specific adenosine deaminase isoform d [Homo
           sapiens]
 gi|301601658|ref|NP_001180424.1| double-stranded RNA-specific adenosine deaminase isoform d [Homo
           sapiens]
 gi|55666218|emb|CAH71907.1| adenosine deaminase, RNA-specific [Homo sapiens]
 gi|55960911|emb|CAI16183.1| adenosine deaminase, RNA-specific [Homo sapiens]
 gi|55961272|emb|CAI17375.1| adenosine deaminase, RNA-specific [Homo sapiens]
 gi|119573568|gb|EAW53183.1| adenosine deaminase, RNA-specific, isoform CRA_a [Homo sapiens]
 gi|119573572|gb|EAW53187.1| adenosine deaminase, RNA-specific, isoform CRA_a [Homo sapiens]
          Length = 931

 Score = 62.0 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E+A      T E+ +  +SGP H+PRF   V I+G         SK+ A+Q 
Sbjct: 207 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 265

Query: 215 AAAEVL 220
           AA + +
Sbjct: 266 AAMKAM 271



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+
Sbjct: 318 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 376

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 377 AAEEAMKAL 385



 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+  +Q AA   L
Sbjct: 436 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 494

Query: 221 K 221
           +
Sbjct: 495 R 495


>gi|195045715|ref|XP_001992024.1| GH24441 [Drosophila grimshawi]
 gi|193892865|gb|EDV91731.1| GH24441 [Drosophila grimshawi]
          Length = 633

 Score = 62.0 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 6/61 (9%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E           YK+  ++GP H P FT+ VE+ G     G   SK+ A   AAA  L
Sbjct: 63  LNELRQGL-----IYKLESQTGPVHAPLFTISVEVDGQKY-MGQGRSKKVARIEAAATAL 116

Query: 221 K 221
           +
Sbjct: 117 R 117


>gi|225438954|ref|XP_002284222.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 542

 Score = 62.0 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 45/139 (32%), Gaps = 4/139 (2%)

Query: 21  SLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           +LL  A  H S     +   +  + RL FLG  +L L  +      +       +  R  
Sbjct: 171 ALLYLAFQHPSCDRANARHVRSGHSRLWFLGQYVLELAFAEYFLQRYPRESPAPMRERVF 230

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
            L+      Q  +   L + +    D+ + +          V  +L  A+YL  G+    
Sbjct: 231 ELIGKRNLPQWIKAASLQNLVFPFDDMDRLIRKEREPPVKSVFWALFGAIYLCYGMPEVY 290

Query: 137 TFVDKYWKQRALKSGKFRR 155
             + + +           +
Sbjct: 291 RVLFEVFGMDPEHEDCQPK 309



 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 51/147 (34%), Gaps = 10/147 (6%)

Query: 18  ANRSL---LEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            N  L   L+    H S       +  YERLE++G +I  ++++  L      A    L 
Sbjct: 396 RNIELGLGLQLCFLHPSKHKFEHPRFCYERLEYVGQKIQDIVMAERLLMKHLDAPGKWLQ 455

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSS----DLRKDVCSFMTSIQADVVESLIAALYL 128
            +   L+  + C +  R+  L  FI  S         +      +    V +++    YL
Sbjct: 456 EKHRRLLMNKFCGRYLRDKYLHRFIIYSEQVQDSYEHNRRLRNPAT-TAVQQAIHGLSYL 514

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRR 155
             G       + + +    ++     R
Sbjct: 515 VYGKPDVRRLMFEVFDFEQIQPKPVLR 541


>gi|119573573|gb|EAW53188.1| adenosine deaminase, RNA-specific, isoform CRA_e [Homo sapiens]
          Length = 905

 Score = 62.0 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E+A      T E+ +  +SGP H+PRF   V I+G         SK+ A+Q 
Sbjct: 207 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 265

Query: 215 AAAEVL 220
           AA + +
Sbjct: 266 AAMKAM 271



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+
Sbjct: 318 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 376

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 377 AAEEAMKAL 385



 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+  +Q AA   L
Sbjct: 436 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 494

Query: 221 K 221
           +
Sbjct: 495 R 495


>gi|297481628|ref|XP_002692232.1| PREDICTED: adenosine deaminase, RNA-specific, B2 (RED2 homolog rat)
           [Bos taurus]
 gi|296481330|gb|DAA23445.1| adenosine deaminase, RNA-specific, B2 [Bos taurus]
          Length = 785

 Score = 62.0 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     ++++  ++GP H P F V V+++GL   +G   +K+ A+  AA
Sbjct: 126 PKNALVQL--HELRPGLQFRMVSQTGPVHAPIFAVAVDVNGLT-FEGTGPTKKKAKMRAA 182

Query: 217 AEVLK 221
              L+
Sbjct: 183 ELALR 187


>gi|194744759|ref|XP_001954860.1| GF18480 [Drosophila ananassae]
 gi|190627897|gb|EDV43421.1| GF18480 [Drosophila ananassae]
          Length = 871

 Score = 62.0 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEV 219
           L E         P Y +   +GP H   F   VEI+G          +K+ A+  AA   
Sbjct: 802 LNELTSKNKWTPPHYTLRENTGPPHSRTFLFSVEINGQTYTPDRGCNNKKEAKLNAAKLC 861

Query: 220 LKREGIW 226
           L   GI 
Sbjct: 862 LCALGIL 868


>gi|316973020|gb|EFV56654.1| conserved hypothetical protein [Trichinella spiralis]
          Length = 400

 Score = 62.0 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 85/224 (37%), Gaps = 23/224 (10%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            L+ RIG    +   L +AL   S     +E  ER + L D    +  ++ +        
Sbjct: 91  ALKSRIGTNLND-DTLRRALIDRSYV--IREIDERKQLL-DASSNVEFASSVLTDIQDNT 146

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           +       + + S E  ++++R+L +   +        D   +  S+ +  + S++ A+ 
Sbjct: 147 DFIRKAAHDFITSEEKLAKISRQLGIYDLL------MADNFPYNNSLMSSSLRSIVGAIL 200

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGK----FRRDA-K--TELQEWAHAKFGVTPEYKVTFR 180
            DG    AG FV  +   + +        + ++  K  T L E        TPE ++   
Sbjct: 201 FDGNEAEAGYFVQDFVLTQLINVDINELWYFKEPLKILTALLE---KNDRGTPEPRILRS 257

Query: 181 SGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           SG     P + V +       A G   S   A ++AA + LK  
Sbjct: 258 SGEFTVTPVYVVGIYCDKKLIAAGE--SVLIATEMAARDCLKNL 299


>gi|321463701|gb|EFX74715.1| hypothetical protein DAPPUDRAFT_108624 [Daphnia pulex]
          Length = 257

 Score = 62.0 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 3/82 (3%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLL-ISTLLFNHF 63
               LE  + Y F N+  L +AL H S   +  ES ++ EFLGD+ LG + +   L +  
Sbjct: 96  ELEKLETILKYKFTNKLFLLQALRHPSAVSALDESNDKFEFLGDKQLGNINVQHKLISRA 155

Query: 64  DSAKEGELSVRFNSLVSAETCS 85
                  LS      V +++  
Sbjct: 156 TFLWPPTLS--RADPVVSDSLH 175


>gi|326480181|gb|EGE04191.1| hypothetical protein TEQG_03222 [Trichophyton equinum CBS 127.97]
          Length = 604

 Score = 61.6 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 7/135 (5%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +E  +GY F ++ LL KALT +    S  +   RL  LG  ++  L+  + +    +   
Sbjct: 10  VEDIVGYKFKSKPLLLKALTAAGSELSDYDGNRRLAQLGTALVEFLLVYIGYRQ--NVPR 67

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           G  +       S E C+ V +   + S+I  SS           ++ A  V  +IAA ++
Sbjct: 68  GYTTRFKIRFGSNEHCAAVIKRTGIDSYISYSSKP----GVKAPTVLAKSVNVIIAATFV 123

Query: 129 DG-GIEVAGTFVDKY 142
           D   I VA   + + 
Sbjct: 124 DSRDISVALRTMLRL 138


>gi|147815305|emb|CAN72245.1| hypothetical protein VITISV_028705 [Vitis vinifera]
          Length = 518

 Score = 61.6 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 45/139 (32%), Gaps = 4/139 (2%)

Query: 21  SLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           +LL  A  H S     +   +  + RL FLG  +L L  +      +       +  R  
Sbjct: 171 ALLYLAFQHPSCDRANARHVRSGHSRLWFLGQYVLELAFAEYFLQRYPRESPAPMRERVF 230

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
            L+      Q  +   L + +    D+ + +          V  +L  A+YL  G+    
Sbjct: 231 ELIGKRNLPQWIKAASLQNLVFPFDDMDRLIRKEREPPVKSVFWALFGAIYLCYGMPEVY 290

Query: 137 TFVDKYWKQRALKSGKFRR 155
             + + +           +
Sbjct: 291 RVLFEVFGMDPEHEDCQPK 309



 Score = 48.9 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 5/99 (5%)

Query: 18  ANRSL---LEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            N  L   L+    H S       +  YERLE++G +I  ++++  L      A    L 
Sbjct: 388 RNIELGLGLQLCFLHPSKHKFEHPRFCYERLEYVGQKIQDIVMAERLLMKHLDAPGKWLQ 447

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111
            +   L+  + C +  R+  L  FI  S  ++       
Sbjct: 448 EKHRRLLMNKFCGRYLRDKYLHRFIIYSEQVQDSYEHNR 486


>gi|328784563|ref|XP_003250468.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
           [Apis mellifera]
          Length = 763

 Score = 61.6 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 158 KTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           KT    L E A     +  +Y++T   GP H  RFTV +++           S + A+  
Sbjct: 182 KTPMCLLNELA-RFNKIQHQYRLTNEQGPAHKKRFTVTLKLGEEEY-VAEGPSIKKAQHS 239

Query: 215 AAAEVLKR 222
           AA E L +
Sbjct: 240 AATEALTK 247



 Score = 54.7 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 1/72 (1%)

Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
              +  Y + R+        +  + L +   AK    P Y +    G      F + V +
Sbjct: 497 RNLIKVYQEPRSESDAAEEVNPVSRLDQIQQAKREKEPVYNLIEEKGAPRRKEFVMEVTM 556

Query: 196 SGLAPAQGMDCS 207
            G   AQG+  +
Sbjct: 557 -GQHSAQGIGPN 567



 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 2/79 (2%)

Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205
            A       +   + + E A  +      ++V    G  H   F     +       G  
Sbjct: 393 EAKDPIAELKSPVSLVHEKALKRGLP-VSFEVVSEIGKPHIRTFRTKCTVGDKV-TLGEG 450

Query: 206 CSKRAAEQVAAAEVLKREG 224
            SK+ +++ AA  +L+   
Sbjct: 451 PSKKVSKKHAAEFMLEELN 469


>gi|328720070|ref|XP_003246941.1| PREDICTED: hypothetical protein LOC100572663 [Acyrthosiphon pisum]
          Length = 474

 Score = 61.6 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 13/86 (15%)

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR------FTVVVEIS 196
              +   S    +   T L E+A     V P Y +       HD        F   V + 
Sbjct: 7   IDPQDAYSSSSDKSPITILNEYAAQNHLVVPHYSLI------HDGSSLSIVSFKYSVNLD 60

Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLKR 222
               A+G   SK+ A+Q+AA+ +LK+
Sbjct: 61  -KFVAEGKGSSKKEAKQLAASNLLKK 85



 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 2/80 (2%)

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            +   + S    +   T L E+A     V P Y + +     +   F   V +     A+
Sbjct: 246 QQDTHVDSSLSNKQPVTILNEYATKNHLV-PHYNLIYDGSSLNIASFKYSVNLD-KFVAE 303

Query: 203 GMDCSKRAAEQVAAAEVLKR 222
           G   SK+ A+ +AA+ +LK+
Sbjct: 304 GEATSKKEAKHLAASNLLKK 323



 Score = 41.6 bits (97), Expect = 0.085,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E+A     V P Y + +     +   F   V +     A+G   SKR A+  AA  +LK+
Sbjct: 147 EYATKNHFV-PHYNLIYDGSSLNIASFKYSVNLD-KIVAEGEGFSKREAKLWAATNLLKK 204


>gi|119573569|gb|EAW53184.1| adenosine deaminase, RNA-specific, isoform CRA_b [Homo sapiens]
 gi|119573574|gb|EAW53189.1| adenosine deaminase, RNA-specific, isoform CRA_b [Homo sapiens]
          Length = 886

 Score = 61.6 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E+A      T E+ +  +SGP H+PRF   V I+G         SK+ A+Q 
Sbjct: 207 KNPISGLLEYAQ-FASQTCEFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQD 265

Query: 215 AAAEVL 220
           AA + +
Sbjct: 266 AAMKAM 271



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   T L E  H K G + E+++  + GP H+P+F   V +           SK+ A+Q+
Sbjct: 318 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQM 376

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 377 AAEEAMKAL 385



 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+  +Q AA   L
Sbjct: 417 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 475

Query: 221 K 221
           +
Sbjct: 476 R 476


>gi|307213091|gb|EFN88613.1| Double-stranded RNA-binding protein Staufen-like protein 2
           [Harpegnathos saltator]
          Length = 797

 Score = 61.6 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 158 KTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           KT    L E A     V  +Y++T   GP H  RFTV +++           S + A+  
Sbjct: 192 KTPMCLLNELA-RFNRVQHQYRLTNEQGPAHKKRFTVTLKLGEEEY-IAEGPSIKKAQHS 249

Query: 215 AAAEVLKR 222
           AA E L +
Sbjct: 250 AATEALTK 257



 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           K G+   ++V   SG  H   F     +       G   SK+ +++ AA  +L+  
Sbjct: 427 KRGLPVSFEVVSESGKPHIRTFMTKCTVGDKV-TVGEGSSKKVSKKRAAELMLEEL 481



 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 1/72 (1%)

Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
              +  Y + R+        +  + L +   AK    P Y +    G      F + V +
Sbjct: 510 RNLIKVYQEPRSENEAAEEVNPVSRLVQIQQAKREREPVYNLIDEKGAPRRREFVMEVTM 569

Query: 196 SGLAPAQGMDCS 207
            G   AQG+  +
Sbjct: 570 -GQHSAQGIGPN 580


>gi|109101248|ref|XP_001108840.1| PREDICTED: 39S ribosomal protein L44, mitochondrial [Macaca
           mulatta]
          Length = 332

 Score = 61.6 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 65/191 (34%), Gaps = 11/191 (5%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
           +S + L   G       ++  L + F       +    + L   E    VAR L +   +
Sbjct: 120 KSNQELSEQGTSFSQTCLTQFLEDEFPDLPTEGIRNLVDFLTGEEVVCHVARNLAVEQ-L 178

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-- 155
            +S +          ++      ++I AL    G E    F+  +   +      F    
Sbjct: 179 TLSEEFPVP-----PTVLQQTFFAVIGALLQSSGPERTALFIRDFLITQMTGKELFEMWK 233

Query: 156 --DAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAE 212
             D    L E    +    PE ++T +SG     P + V +       A+G   +   AE
Sbjct: 234 IIDPMGLLVEELKKRNISAPESRLTRQSGGTTALPLYFVGLYCDKKLIAEGPGETVLVAE 293

Query: 213 QVAAAEVLKRE 223
           + AA   L++ 
Sbjct: 294 EEAARVALRKL 304


>gi|321463679|gb|EFX74693.1| hypothetical protein DAPPUDRAFT_251616 [Daphnia pulex]
          Length = 233

 Score = 61.6 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 67/196 (34%), Gaps = 47/196 (23%)

Query: 50  ILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLAS-------------- 95
           +L LL+ST LF++ +      LS   +++ S +    +A +                   
Sbjct: 2   LLSLLVSTHLFDYSEEYTPSHLSRFRSAITSNDCFGVLAVKFGFHKDLRGAPIEVQQRVN 61

Query: 96  -----FIRV----SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG------TFVD 140
                F+R+    ++         +  + AD+ E++  A+Y D G            F+ 
Sbjct: 62  EFADLFLRLKATPNNGYATTESLVVPGVLADLFEAVAGAIYKDSGFSRIAVLGSFNPFLR 121

Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
           + +   +L +            E              T ++G     +F+  + I     
Sbjct: 122 QAYDHFSLPAD-----------EILQELKPAMITEISTLKNG-----KFSCKISIDNND- 164

Query: 201 AQGMDCSKRAAEQVAA 216
             G   SKR A ++AA
Sbjct: 165 FIGAGTSKRNA-KLAA 179


>gi|114583638|ref|XP_526045.2| PREDICTED: 39S ribosomal protein L44, mitochondrial [Pan
           troglodytes]
          Length = 332

 Score = 61.6 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 65/191 (34%), Gaps = 11/191 (5%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
           +S + L   G       ++  L + +       +    + L   E    VAR L +   +
Sbjct: 120 KSNQELSEQGTSFSQTCLTQFLEDEYPDMPTEGIKNLVDFLTGEEVVCHVARNLAVEQ-L 178

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-- 155
            +S +          ++      ++I AL    G E    F+  +   +      F    
Sbjct: 179 TLSEEFPVP-----PTVLQQTFFAVIGALLQSSGPERTALFIRDFLITQMTGKELFEMWK 233

Query: 156 --DAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAE 212
             +    L E    +    PE ++T +SG     P + V +       A+G   +   AE
Sbjct: 234 IINPMGLLVEELKKRNVSPPESRLTRQSGGTTALPLYFVGLYCDKKLIAEGPGETVLVAE 293

Query: 213 QVAAAEVLKRE 223
           + AA   L++ 
Sbjct: 294 EEAARVALRKL 304


>gi|224084072|ref|XP_002188254.1| PREDICTED: adenosine deaminase, RNA-specific [Taeniopygia guttata]
          Length = 926

 Score = 61.6 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   + L E+   K G   E+++  + GP HDPRF+  V++        +  SK+ A+Q+
Sbjct: 329 KHPISILMEYGQ-KSGNIIEFQLLSQEGPPHDPRFSYCVKMGDQIFPAVVGNSKKGAKQM 387

Query: 215 AAAEVLK 221
           AA   +K
Sbjct: 388 AAEVAVK 394



 Score = 57.4 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            ++  + L E++   +    ++ +  ++GP H+PRF     I+G         SK+ A+Q
Sbjct: 213 EKNPVSGLTEYSQYTYQHC-DFIMLEQNGPSHEPRFKFQAVINGRQFPPAEAGSKKLAKQ 271

Query: 214 VAAAEVLK 221
            AAA  +K
Sbjct: 272 EAAANAMK 279



 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
              +  + L E+A +      E+K+  +SGP HDP+F    ++ G         +K+  +
Sbjct: 443 LNVNPVSGLLEYARSNGFAA-EFKLIDQSGPPHDPKFVYQAKVGGRWFPAVTAHNKKQGK 501

Query: 213 QVAAAEVLK 221
           Q AA   L+
Sbjct: 502 QEAADAALR 510


>gi|300797105|ref|NP_001179517.1| double-stranded RNA-specific editase B2 [Bos taurus]
          Length = 734

 Score = 61.6 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     ++++  ++GP H P F V V+++GL   +G   +K+ A+  AA
Sbjct: 126 PKNALVQL--HELRPGLQFRMVSQTGPVHAPIFAVAVDVNGLT-FEGTGPTKKKAKMRAA 182

Query: 217 AEVLK 221
              L+
Sbjct: 183 ELALR 187


>gi|170101705|ref|XP_001882069.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164642884|gb|EDR07138.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 76

 Score = 61.6 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           +L           P Y+   RSGP H   + ++V I  +   +G   +++ A++ AA   
Sbjct: 7   QLNNKCQHYRKEMPIYE-EKRSGPAHAEVWNIIVTIKEIEYGRGEGSNRKRAKEAAAEVA 65

Query: 220 LKRE 223
           LKR 
Sbjct: 66  LKRL 69


>gi|288923600|ref|ZP_06417710.1| double-stranded RNA binding domain protein [Frankia sp. EUN1f]
 gi|288345062|gb|EFC79481.1| double-stranded RNA binding domain protein [Frankia sp. EUN1f]
          Length = 110

 Score = 61.6 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV-- 219
           QE         P+Y VT  +GPDH  RFT    ++G    +G   SK+ AEQ AAA    
Sbjct: 2   QEQTALLGLGPPDYVVT-EAGPDHAKRFTAFARVAGEVLGEGEGGSKKEAEQRAAATAFA 60

Query: 220 -LKR 222
            L++
Sbjct: 61  MLEK 64


>gi|194902968|ref|XP_001980797.1| GG16917 [Drosophila erecta]
 gi|190652500|gb|EDV49755.1| GG16917 [Drosophila erecta]
          Length = 892

 Score = 61.6 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEV 219
           L E         P+YK+    GP H+  F   VEI+G          +K+ A+  AA   
Sbjct: 823 LNELTSKNKWTPPQYKLRQDIGPAHNRSFLFSVEINGQTYTPDRGCNNKKEAKLNAATLC 882

Query: 220 LKREGIW 226
           L+  GI 
Sbjct: 883 LRALGIL 889


>gi|156396886|ref|XP_001637623.1| predicted protein [Nematostella vectensis]
 gi|156224737|gb|EDO45560.1| predicted protein [Nematostella vectensis]
          Length = 332

 Score = 61.6 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 12/94 (12%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRIL--------GLL 54
           A++    EKRIGY F+N+  L +ALTH+S S +  + +    F G  +L          +
Sbjct: 190 AVQLQGFEKRIGYEFSNKLYLIQALTHASYSQNSPKHH----FFGHALLAEREGSNKKQV 245

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVA 88
           +++     F +      +     L    + +  A
Sbjct: 246 VASFATTTFVTLALCLANNLRCVLTRYYSLATYA 279


>gi|322800091|gb|EFZ21197.1| hypothetical protein SINV_10966 [Solenopsis invicta]
          Length = 804

 Score = 61.6 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +Y++T   GP H  RFTV +++           S + A+  AA E L +
Sbjct: 217 QYRLTNEQGPAHKKRFTVTLKLGEEEY-VAEGPSIKKAQHSAATEALTK 264



 Score = 55.1 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 1/72 (1%)

Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
              +  Y + RA        +  + L +   AK    P Y +    G      F + V +
Sbjct: 516 RNLIKVYQEPRAENEAAEEVNPVSRLVQIQQAKREREPVYNLIDEKGAPRRREFVMEVTM 575

Query: 196 SGLAPAQGMDCS 207
            G   AQG+  +
Sbjct: 576 -GQHSAQGIGPN 586



 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           K G+   ++V   SG  H   F     + G     G   SK+ +++ AA  +L   
Sbjct: 433 KRGLPVSFEVVSESGKPHIRTFMTKCTV-GEKVTVGEGSSKKVSKKRAAELMLDEL 487


>gi|297624883|ref|YP_003706317.1| double-stranded RNA binding domain-containing protein [Truepera
           radiovictrix DSM 17093]
 gi|297166063|gb|ADI15774.1| double-stranded RNA binding domain protein [Truepera radiovictrix
           DSM 17093]
          Length = 157

 Score = 61.6 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +  K  L E         P +  T   GPDH+PRF   V I G    +G   +KR AE+ 
Sbjct: 2   QHPKGTLIERCKQLRLGAPSFN-TRNLGPDHEPRFESEVLIQGEVYGRGEAGTKRDAERR 60

Query: 215 A 215
           A
Sbjct: 61  A 61


>gi|195383442|ref|XP_002050435.1| stau [Drosophila virilis]
 gi|194145232|gb|EDW61628.1| stau [Drosophila virilis]
          Length = 1100

 Score = 61.6 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 40/88 (45%), Gaps = 3/88 (3%)

Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVV 193
              +    K++ +       +  T+L +    +    P +++  ++G +   R  F + V
Sbjct: 764 RKRLSAPLKEKTILELDDAENPITKLIQLQQTRKEKEPIFELIAKNGNETSRRREFVMEV 823

Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             SG + A+G   SK+ A++ AA  +L+
Sbjct: 824 SASG-SIARGTGNSKKLAKRNAAQALLE 850



 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y++T   GP H   FTV +++             + A+ +AA++ ++
Sbjct: 394 QYRLTGERGPAHCKTFTVTLKLGEEEY-SADGFKIKKAQHLAASKAIE 440



 Score = 49.7 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           K  +T  +KV    GP H   F     + G    +G    K+ +++ AA ++L   
Sbjct: 661 KRNMTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKLSKKRAAEKMLSEL 715


>gi|7229532|gb|AAF42865.1|AF225924_1 staufen [Drosophila virilis]
          Length = 1062

 Score = 61.6 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 40/88 (45%), Gaps = 3/88 (3%)

Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVV 193
              +    K++ +       +  T+L +    +    P +++  ++G +   R  F + V
Sbjct: 721 RKRLSAPLKEKTILELDDAENPITKLIQLQQTRKEKEPIFELIAKNGNETSRRREFVMEV 780

Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             SG + A+G   SK+ A++ AA  +L+
Sbjct: 781 SASG-SIARGTGNSKKLAKRNAAQALLE 807



 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y++T   GP H   FTV +++             + A+ +AA++ ++
Sbjct: 351 QYRLTGERGPAHCKTFTVTLKLGEEEY-SADGFKIKKAQHLAASKAIE 397



 Score = 49.7 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           K  +T  +KV    GP H   F     + G    +G    K+ +++ AA ++L   
Sbjct: 618 KRNMTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKLSKKRAAEKMLSEL 672


>gi|195499487|ref|XP_002096969.1| GE25964 [Drosophila yakuba]
 gi|194183070|gb|EDW96681.1| GE25964 [Drosophila yakuba]
          Length = 908

 Score = 61.6 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEV 219
           L E         P+YK+    GP H+  F   VEI+G          +K+ A+  AA   
Sbjct: 839 LNELTSKNKWTPPQYKLRQDIGPAHNRSFLFSVEINGQTYTPDRGCNNKKEAKLNAATLC 898

Query: 220 LKREGIW 226
           L+  GI 
Sbjct: 899 LRALGIL 905


>gi|321254347|ref|XP_003193044.1| hypothetical protein CGB_C7350C [Cryptococcus gattii WM276]
 gi|317459513|gb|ADV21257.1| hypothetical protein CNC05030 [Cryptococcus gattii WM276]
          Length = 409

 Score = 61.6 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 48/276 (17%), Positives = 77/276 (27%), Gaps = 82/276 (29%)

Query: 27  LTHSSISHSYQES-------YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           LTH S      +S        E L  LG+ +LGL  S  L   +       L     + V
Sbjct: 64  LTHPSYRSQQLDSAELAAQTNELLATLGNSLLGLFASEHLSAVYPYLPTKPLQHAVTAYV 123

Query: 80  SAETCSQVARELDL--------------------ASFIRVSS------------DLRKD- 106
              +C  VAR L +                       +R S                   
Sbjct: 124 GPASCLSVARSLGVAVQGGGNTGLPGLGAGSSSAGVAVRWSKTALAERNWRDTRGEAAQG 183

Query: 107 ------VCSFMTSIQ-------------------ADVVESLIAALYLDGGIEVAGTFVDK 141
                    F   I+                   A  V + +  +Y + GI  A  F   
Sbjct: 184 PLKVPVGKRFKKYIKEEDQDVTVQARRETHEDVVASAVRAFVGLIYQEQGIHAARAFTHA 243

Query: 142 YWKQRALKSGKFRRDAKTELQEWA--------------HAKFGVTPEYKVTFRSGPDH-D 186
           ++  RAL            +Q  +               +      + ++   +G     
Sbjct: 244 HFLSRALDLSSLIT-PTNPMQTLSSVVSSHLSSTAGVPASSSHTLIQPRLLASTGTASQA 302

Query: 187 PRFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLK 221
           P F + + +  G+  A+G   SK  A+  AA   L+
Sbjct: 303 PLFLIGLFLPSGIKLAEGHGSSKAMAQHRAAVNALQ 338


>gi|255729534|ref|XP_002549692.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240132761|gb|EER32318.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 390

 Score = 61.6 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 71/229 (31%), Gaps = 48/229 (20%)

Query: 39  SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELD------ 92
           +   L+ LG  +L   ++  L   +        +   +SL+ ++  S++++         
Sbjct: 126 NNFGLKVLGKSLLTYYVTEYLLLTYPRLPTAIHNAAVDSLMGSQALSEISKSWGIEVDSI 185

Query: 93  --LASFI-------------RVSSDLRKDV--CSFMTSI-------------------QA 116
             L  F+              +S + + D         +                    +
Sbjct: 186 SKLDRFLGKESEFMKFGRLRYLSENEKSDNFYSKGNAKVDGVVEVINNEGVVTPEDMAYS 245

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHA-KFGVTP 173
            V  ++I  LY   G   A  F+  +   R +   +  +      EL       +F    
Sbjct: 246 TVTTAVIGGLYTHCGESAAKEFIKDHILSRKVPLDQMFQFNQPVKELVRLCDKLEFKEPV 305

Query: 174 EYKVTFRSGP--DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             ++   +G    H P+F   V +      +G+  S + AE  A    L
Sbjct: 306 SIRLIAETGRLSAH-PQFLAGVFVGSEKLGEGIGGSLKEAETRATVNAL 353


>gi|200210|gb|AAA39885.1| 65 kD protein kinase [Mus musculus]
          Length = 515

 Score = 61.6 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 21/53 (39%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
              GV   YK    SGP HD RFT  V I      +    SK+ A   AA   
Sbjct: 18  QMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLA 70



 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 16/37 (43%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            RF    +I       G    K+ A+Q+AA E  ++ 
Sbjct: 124 QRFICKCKIGQTMYGTGSGVIKQEAKQLAAKEAYQKL 160


>gi|332031602|gb|EGI71074.1| Double-stranded RNA-binding protein Staufen-like protein 2
           [Acromyrmex echinatior]
          Length = 804

 Score = 61.2 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +Y++T   GP H  RFTV +++           S + A+  AA E L +
Sbjct: 216 QYRLTNEQGPAHKKRFTVTLKLGEEEY-VAEGPSIKKAQHSAATEALTK 263



 Score = 55.1 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 1/72 (1%)

Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
              +  Y + RA        +  + L +   AK    P Y +    G      F + V +
Sbjct: 516 RNLIKVYQEPRAENEAAEEVNPVSRLVQIQQAKREREPVYNLIDEKGAPRRREFVMEVTM 575

Query: 196 SGLAPAQGMDCS 207
            G   AQG+  +
Sbjct: 576 -GQHSAQGIGPN 586



 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           K G+   ++V   SG  H   F     + G     G   SK+ +++ AA  +L   
Sbjct: 433 KRGLPVSFEVVSESGKPHIRTFMTKCTV-GEKVTVGEGSSKKVSKKRAAELMLDEL 487


>gi|255584888|ref|XP_002533159.1| RNA binding protein, putative [Ricinus communis]
 gi|223527031|gb|EEF29218.1| RNA binding protein, putative [Ricinus communis]
          Length = 532

 Score = 61.2 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 45/139 (32%), Gaps = 4/139 (2%)

Query: 21  SLLEKALTHSSI----SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           +LL  A  H S     +   +  + RL FLG  +L L         +       +  R  
Sbjct: 164 TLLYLAFQHPSCERTNARHVKYGHSRLCFLGQYVLELAFCEFFLQRYPRESPAPMRERVF 223

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
           +L+      +  +   L + I    D+ K +          V  +L  A+YL  G+    
Sbjct: 224 ALIGKRNLPKWIKAASLQNLIFPYDDIDKLLRKDREPPVKSVFWALFGAIYLCFGMPEVY 283

Query: 137 TFVDKYWKQRALKSGKFRR 155
             + + +           +
Sbjct: 284 RVLFEVFGMDPEAEDCQPK 302



 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 50/144 (34%), Gaps = 8/144 (5%)

Query: 18  ANRSL---LEKALTHSS-ISHSYQE-SYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            N  L   L+    H S     +    YERLEF+G +I  L+++  L      A    L 
Sbjct: 389 RNIELGLGLQLCFLHPSKYKFEHPRFCYERLEFVGQKIQDLVLAERLLMKHLDAPGKWLQ 448

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSS---DLRKDVCSFMTSIQADVVESLIAALYLD 129
            R   L+  + C +  R+  L  FI  S    D  ++           V ++L    Y  
Sbjct: 449 ERHRRLLMNKFCGRYLRDKHLHHFIVYSEQVIDAYENNRRLRNPATTAVQQALHGLSYTV 508

Query: 130 GGIEVAGTFVDKYWKQRALKSGKF 153
            G       + + +    ++    
Sbjct: 509 YGKPDVRRLMFEVFDFEQIQPKAV 532


>gi|156387816|ref|XP_001634398.1| predicted protein [Nematostella vectensis]
 gi|156221481|gb|EDO42335.1| predicted protein [Nematostella vectensis]
          Length = 118

 Score = 61.2 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 157 AKTELQEWA--HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            KT + E      + G+  +++     G  H+  FT+  +        G   SK+ A+Q 
Sbjct: 32  PKTPISELLELAVQMGIKVDFEQVSAVGMPHNQTFTINCKAGDFT-GIGTGPSKKKAKQN 90

Query: 215 AAAEVLKR 222
           AA+  L++
Sbjct: 91  AASATLEK 98


>gi|193787107|dbj|BAG52313.1| unnamed protein product [Homo sapiens]
          Length = 579

 Score = 61.2 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 54/160 (33%), Gaps = 25/160 (15%)

Query: 74  RFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD---VVESLIA----AL 126
              + V+    + + R++      R    L K+       I  D     + L+A    A 
Sbjct: 419 LRAAPVTGGMGAVLMRKMGW----REGEGLEKNKEGNKEPILVDFKTDRKGLVAVGERAQ 474

Query: 127 YLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
              G    A                   +   + L E  + +    PE+ +   SGPDH 
Sbjct: 475 KRSGNFSAAMK-------------DLSGKHPVSALMEICNKRRWQPPEFLLVHDSGPDHR 521

Query: 187 PRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLKREGI 225
             F   V I+G A        +K+ A+  AA  VL+  G+
Sbjct: 522 KHFLFRVLINGSAYQPSFASPNKKHAKATAATVVLQAMGL 561


>gi|6755160|ref|NP_035293.1| interferon-induced, double-stranded RNA-activated protein kinase
           [Mus musculus]
 gi|2507204|sp|Q03963|E2AK2_MOUSE RecName: Full=Interferon-induced, double-stranded RNA-activated
           protein kinase; AltName: Full=Eukaryotic translation
           initiation factor 2-alpha kinase 2; Short=eIF-2A protein
           kinase 2; AltName: Full=Interferon-inducible
           RNA-dependent protein kinase; AltName: Full=P1/eIF-2A
           protein kinase; AltName: Full=Protein kinase
           RNA-activated; Short=PKR; AltName:
           Full=Serine/threonine-protein kinase TIK; AltName:
           Full=p68 kinase
 gi|536918|gb|AAC24729.1| interferon-inducible RNA-dependent protein kinase [Mus musculus]
 gi|26324546|dbj|BAC26027.1| unnamed protein product [Mus musculus]
          Length = 515

 Score = 61.2 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 21/53 (39%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
              GV   YK    SGP HD RFT  V I      +    SK+ A   AA   
Sbjct: 18  QMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLA 70



 Score = 48.9 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 17/37 (45%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            RF    +I       G   +K+ A+Q+AA E  ++ 
Sbjct: 124 QRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKL 160


>gi|224129272|ref|XP_002328933.1| predicted protein [Populus trichocarpa]
 gi|222839363|gb|EEE77700.1| predicted protein [Populus trichocarpa]
          Length = 133

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 26/69 (37%), Gaps = 8/69 (11%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK----RAAE 212
            K +LQE A       P Y    R GPDH PRF   V  +G         S     R AE
Sbjct: 2   FKNQLQELAQRSCFNLPAYACI-REGPDHAPRFKASVNFNGEIFES---PSYCTTLRQAE 57

Query: 213 QVAAAEVLK 221
             AA   L 
Sbjct: 58  HAAAEVALN 66



 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 133 EVAGTFVDKYWKQRALKSGKFRRD----AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           EVA   +      R+L +    +D     K  LQE AH      P Y    RSGP H P 
Sbjct: 62  EVALNVLSSRGPARSLTARVLMKDETGIYKNLLQETAHRAGLNLPAYTTV-RSGPGHVPV 120

Query: 189 FTVVVEISG 197
           FT  VE++G
Sbjct: 121 FTCTVELAG 129


>gi|327291984|ref|XP_003230700.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like,
           partial [Anolis carolinensis]
          Length = 404

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 1/97 (1%)

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD 184
           +LY D  +  A    +        +     ++  + L E+A     V  E+++  + GP 
Sbjct: 52  SLYEDSSLSEAELQAEPEPSSLTPQLCTTGKNPVSALMEYAQKSGSVC-EFQLLAQDGPP 110

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           HDP+F   V+I        +  SK+ A+Q+AA   ++
Sbjct: 111 HDPKFKYCVKIGDQVFPAVVSNSKKGAKQMAAEAAIR 147



 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + L E+A A      E+K+  ++GP HDP+F    ++ G         SK+  +Q A
Sbjct: 193 NPVSGLLEYARANAFAA-EFKLIEQTGPPHDPKFVFQAKVGGRWFPAVTAHSKKQGKQEA 251

Query: 216 AAEVLK 221
           A   L+
Sbjct: 252 ADAALR 257


>gi|307184289|gb|EFN70747.1| Double-stranded RNA-binding protein Staufen-like protein 2
           [Camponotus floridanus]
          Length = 607

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +Y++T   GP H  RFTV +++           S + A+  AA E L +
Sbjct: 22  QYRLTNEQGPAHKKRFTVTLKLGEEEY-VAEGPSIKKAQHSAATEALTK 69



 Score = 55.1 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           K G++  ++V   SG  H   F     +       G   SK+ +++ AA  +L+  
Sbjct: 238 KRGLSVSFEVVSESGKPHIRTFMTKCTVGDKV-TVGEGSSKKVSKKRAAELMLEEL 292



 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 1/72 (1%)

Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
              +  Y + R+        +  + L +   AK    P Y +    G      F + V +
Sbjct: 321 RNLIKVYQEPRSESEAAEEVNPVSRLVQIQQAKREREPVYNLIDEKGAPRRREFVMEVTM 380

Query: 196 SGLAPAQGMDCS 207
            G   AQG+  +
Sbjct: 381 -GQHSAQGIGPN 391


>gi|1932815|gb|AAB51688.1| dsRNA adenosine deaminase [Xenopus laevis]
          Length = 1124

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            ++  + L E    K G   E+++  + GP HDP+FT  V+I        +  SK+ A+Q
Sbjct: 531 NKNPISVLMEHGQ-KSGSMCEFQLVQQEGPPHDPKFTYTVKIGNQTFPPVVANSKKMAKQ 589

Query: 214 VAAAEVLKRE 223
           +AA   ++  
Sbjct: 590 LAAEAAVREL 599



 Score = 58.2 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 5/70 (7%)

Query: 154 RRDAKTELQEWAH--AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
            ++  + L E+ H  ++     ++ +  +SGP HDPRF +   I G         SK+ A
Sbjct: 426 EKNPVSGLLEFTHYCSQQC---DFVLLNQSGPSHDPRFKIQAVIDGRHFPVAEASSKKTA 482

Query: 212 EQVAAAEVLK 221
           ++ AA+  L+
Sbjct: 483 KKDAASLALR 492



 Score = 40.4 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
           +  + L E+A AK     E+K+  ++GP HDP+F    ++ G 
Sbjct: 650 NPVSGLLEYARAKGFAA-EFKMVNQTGPPHDPKFVFQAKVGGR 691


>gi|195152501|ref|XP_002017175.1| GL22164 [Drosophila persimilis]
 gi|194112232|gb|EDW34275.1| GL22164 [Drosophila persimilis]
          Length = 322

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 76/233 (32%), Gaps = 31/233 (13%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQE---------------SYERLEFLGDRILGLLI 55
           KR+G  F    L ++A T  S +H  +E                 + L  +G  I    +
Sbjct: 72  KRLGENFELPQL-QEAFTQRSYAHQEEEKQRKLGIEEGDLKIADNQELAKMGSHIARAYV 130

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
              L        +       + L+S ET + V+  L     I                  
Sbjct: 131 EAFLKQSLPKVPKEGQEAIASYLLSTETLANVSSHLGTKDLI------FTTEYPPSPESL 184

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYW----KQRALKSGKFRRDAKTELQEWAHAKFGV 171
           A+ ++++I AL    G+E A  FV  +      Q+ L      +     L+E    +   
Sbjct: 185 AESLQAVIGALADSSGVERAFLFVRDFICTQLNQKDLLDLWTPKQPVQLLEEICQQRKLG 244

Query: 172 TPEYKVTFRSGPDHDPR---FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             E ++    G   +     + V +  +     +G       A + AA + L+
Sbjct: 245 EVEPRLLGDCGK--NTVLAAYHVGIYANRQLLGKGFGEDVPTATETAALDALQ 295


>gi|198453837|ref|XP_001359359.2| GA15248 [Drosophila pseudoobscura pseudoobscura]
 gi|198132536|gb|EAL28505.2| GA15248 [Drosophila pseudoobscura pseudoobscura]
          Length = 322

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 76/233 (32%), Gaps = 31/233 (13%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQE---------------SYERLEFLGDRILGLLI 55
           KR+G  F    L ++A T  S +H  +E                 + L  +G  I    +
Sbjct: 72  KRLGENFELPQL-QEAFTQRSYAHQEEEKQRKLGIEEGDLKIADNQELAKMGSHIARAYV 130

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
              L        +       + L+S ET + V+  L     I                  
Sbjct: 131 EAFLKQSLPKVPKEGQEAIASYLLSTETLANVSSHLGTKDLI------FTTEYPPSPESL 184

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYW----KQRALKSGKFRRDAKTELQEWAHAKFGV 171
           A+ ++++I AL    G+E A  FV  +      Q+ L      +     L+E    +   
Sbjct: 185 AESLQAVIGALADSSGVERAFLFVRDFICTQLNQKDLLDLWTPKQPVQLLEEICQQRKLG 244

Query: 172 TPEYKVTFRSGPDHDPR---FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             E ++    G   +     + V +  +     +G       A + AA + L+
Sbjct: 245 EVEPRLLGDCGK--NTVLAAYHVGIYANRQLLGKGFGEDVPTATETAALDALQ 295


>gi|326935945|ref|XP_003214024.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like
           [Meleagris gallopavo]
          Length = 852

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            ++  + L E++   +    E+ +  +SGP H+PRF     I+G         SK+ A+Q
Sbjct: 139 EKNPVSGLTEYSQFTYQHC-EFTMLEQSGPSHEPRFKFQALINGRPFPPAEAGSKKLAKQ 197

Query: 214 VAAAEVLK 221
            AAA  +K
Sbjct: 198 EAAANAMK 205



 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   + L E+   K G T E+ +  + GP HDPRF+  V++        +  SK+ A+Q+
Sbjct: 255 KHPISVLMEYGQ-KSGNTIEFLLLSQDGPSHDPRFSYCVKMGDQIFPAVVGNSKKGAKQM 313

Query: 215 AAAEVLK 221
           AA   +K
Sbjct: 314 AAEVAVK 320



 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
              +  + L E+A +      E+K+  ++GP HDP+F    ++ G         SK+  +
Sbjct: 370 LNVNPVSGLLEYARSNGFAA-EFKLIDQTGPPHDPKFVYQAKVGGRWFPAVTAHSKKQGK 428

Query: 213 QVAAAEVLK 221
           Q AA   L+
Sbjct: 429 QEAADAALR 437


>gi|332246671|ref|XP_003272476.1| PREDICTED: 39S ribosomal protein L44, mitochondrial-like [Nomascus
           leucogenys]
          Length = 340

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 65/191 (34%), Gaps = 11/191 (5%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
           +S + L   G       ++  L + +       +    + L   E    VAR L +   +
Sbjct: 120 KSNQELSEQGTSFSQTCLTQFLEDEYPDLPTEGIKNLTDFLTGEEVVCHVARNLAVEQ-L 178

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-- 155
            +S +          ++      ++I AL    G E    F+  +   +      F    
Sbjct: 179 TLSEEFPVP-----PTVLQQTFFAVIGALLQSSGPERTALFIRDFLITQMTGKELFEMWK 233

Query: 156 --DAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAE 212
             +    L E    +    PE ++T +SG     P + V +       A+G   +   AE
Sbjct: 234 IINPMGLLVEELKKRNISAPESRLTRQSGGTTALPLYFVGLYCDKKLIAEGPGETVLVAE 293

Query: 213 QVAAAEVLKRE 223
           + AA   L++ 
Sbjct: 294 EEAARVALRKL 304


>gi|16741143|gb|AAH16422.1| Eif2ak2 protein [Mus musculus]
 gi|117616338|gb|ABK42187.1| Prkr [synthetic construct]
 gi|148706522|gb|EDL38469.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Mus
           musculus]
          Length = 515

 Score = 60.9 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 21/53 (39%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
              GV   YK    SGP HD RFT  V I      +    SK+ A   AA   
Sbjct: 18  QMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGKSKQEARNAAAKLA 70



 Score = 48.9 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 17/37 (45%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            RF    +I       G   +K+ A+Q+AA E  ++ 
Sbjct: 124 QRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKL 160


>gi|299756242|ref|XP_001829190.2| hypothetical protein CC1G_01870 [Coprinopsis cinerea okayama7#130]
 gi|298411587|gb|EAU92825.2| hypothetical protein CC1G_01870 [Coprinopsis cinerea okayama7#130]
          Length = 252

 Score = 60.9 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 89/241 (36%), Gaps = 52/241 (21%)

Query: 19  NRSLLEKALTHSSISHSYQESYE-----RLEFLGDRILGLLISTLLFNHFDSAKEGELSV 73
           +  ++ +A  H++   +     +     RL+ +G ++L + ++   F+   +    E+  
Sbjct: 12  DLEIILEAF-HATAQSTDLNQRQWGDKARLQEIGVQVLHMALTAHYFSVKPNLSATEIQS 70

Query: 74  RFNSLVSAETCSQVARELD-LASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
           + + +       +     D L  F+     + KD  +        + E+ + AL+   G+
Sbjct: 71  KVSEVRHGGRIHEWVGRYDNLIRFV-----MDKDSPAER----GQLFEAYVGALWYSKGM 121

Query: 133 EVAGTFVDKYWKQRA---LKSGKFRRD-----AKTELQ---------------------- 162
           +    ++            +     +D     +++  Q                      
Sbjct: 122 KATQKWISDLLGDNVYVKDEPDDTAQDVTGDSSQSPPQYSPTATTTSGPPHPSVAPAIPL 181

Query: 163 ----EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
               E A A+  +   ++ +F SGP H P +TV   ++G +  +G + +K+ A+  AA+ 
Sbjct: 182 AHVNELA-AQRKINMTWEASF-SGPPHMPIWTVRCLVNGQSYGEGTNANKKKAQAEAASN 239

Query: 219 V 219
            
Sbjct: 240 A 240


>gi|157118092|ref|XP_001659004.1| mitochondrial ribosomal protein, L44, putative [Aedes aegypti]
 gi|108875856|gb|EAT40081.1| mitochondrial ribosomal protein, L44, putative [Aedes aegypti]
          Length = 327

 Score = 60.9 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 79/239 (33%), Gaps = 39/239 (16%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQ---------------ESYERLEFLGDRILGLLI 55
           KR+   F + ++L++A TH S     +               +    L  LG+R++   +
Sbjct: 70  KRLSEQF-DTAVLQQAFTHRSFIAQEEQRQVDVGIEKPELGLKDNRELVQLGERLIEEYV 128

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
              +           +    + L S E  + V++ L     I  +     D      S+ 
Sbjct: 129 EAFVLTALPRLPNEGIRSIVSGLTSQEKLANVSKHLGTKDIILAAEFPVTD------SLL 182

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTE------LQEWAHAKF 169
           AD   +++ AL    G E A  FV  +   +   S +   D  T       L+E+   K 
Sbjct: 183 ADTFCAVVGALQKSSGDERAFLFVRDFVCTQL--SQQDVNDYWTIESPLDLLREYCKEKK 240

Query: 170 GVTPEYKVTFRSG-----PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              PE +     G       H     V +  +      G       A   AA + L++ 
Sbjct: 241 LGEPEPRSIGLVGKNTLLAAH----RVGIYCNKQFVGSGYGEDIDTAIDEAARDCLRQL 295


>gi|197100516|ref|NP_001127183.1| 39S ribosomal protein L44, mitochondrial precursor [Pongo abelii]
 gi|68053049|sp|Q5REY8|RM44_PONAB RecName: Full=39S ribosomal protein L44, mitochondrial;
           Short=L44mt; Short=MRP-L44; Flags: Precursor
 gi|55725777|emb|CAH89669.1| hypothetical protein [Pongo abelii]
          Length = 332

 Score = 60.9 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 64/191 (33%), Gaps = 11/191 (5%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
           +S + L   G       ++  L + +       +      L   +    VAR L +   +
Sbjct: 120 KSNQELSEQGTSFSQTCLTQFLEDEYPDLPTEGIKNLVEFLTGEDVVCHVARNLAVEQ-L 178

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-- 155
            +S +          ++      ++I AL    G E    F+  +   +      F    
Sbjct: 179 TLSEEFPVP-----PTVLQQTFFAVIGALLQSSGPERTALFIRDFLITQMTGKELFEMWK 233

Query: 156 --DAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAE 212
             +    L E    +    PE ++T +SG     P + V +       A+G   +   AE
Sbjct: 234 IINPMGLLVEELKKRNISAPESRLTRQSGGTTALPLYFVGLYCDKKLIAEGPGETVLVAE 293

Query: 213 QVAAAEVLKRE 223
           + AA   L++ 
Sbjct: 294 EEAARVALRKL 304


>gi|321470822|gb|EFX81797.1| hypothetical protein DAPPUDRAFT_211106 [Daphnia pulex]
          Length = 605

 Score = 60.9 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +     + ++    G  H P +T  V I    P +G   SK+ A+  AA   L++
Sbjct: 130 RLKPGIKIEIVKEEGSPHLPIYTARVVIGDQ-PFEGTGSSKKQAKNEAAQAALQK 183


>gi|296087161|emb|CBI33535.3| unnamed protein product [Vitis vinifera]
          Length = 333

 Score = 60.9 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS-KRAAEQVA 215
            K  LQE+        P Y+     G  H P+F   V + G         S ++AAEQ  
Sbjct: 23  HKNRLQEYTQRSAIPLPIYQTVNE-GFQHAPKFRSTVLVDGATYTSPNTFSHRKAAEQDV 81

Query: 216 AAEVLK 221
           A   L+
Sbjct: 82  ARLALE 87



 Score = 53.9 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           K+ L E+A       P Y      G    P F   +  +G+        +K+ AEQ+AA 
Sbjct: 109 KSILNEFAVKMNLEKPTYTTVQPEGL--LPVFVSSLVFNGVTYTGDAGRNKKEAEQLAAR 166

Query: 218 EVL 220
            V+
Sbjct: 167 TVI 169


>gi|225453150|ref|XP_002272597.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 671

 Score = 60.9 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS-KRAAEQVA 215
            K  LQE+        P Y+     G  H P+F   V + G         S ++AAEQ  
Sbjct: 361 HKNRLQEYTQRSAIPLPIYQTVNE-GFQHAPKFRSTVLVDGATYTSPNTFSHRKAAEQDV 419

Query: 216 AAEVLK 221
           A   L+
Sbjct: 420 ARLALE 425



 Score = 53.9 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           K+ L E+A       P Y      G    P F   +  +G+        +K+ AEQ+AA 
Sbjct: 447 KSILNEFAVKMNLEKPTYTTVQPEGL--LPVFVSSLVFNGVTYTGDAGRNKKEAEQLAAR 504

Query: 218 EVL 220
            V+
Sbjct: 505 TVI 507


>gi|195347707|ref|XP_002040393.1| GM19166 [Drosophila sechellia]
 gi|194121821|gb|EDW43864.1| GM19166 [Drosophila sechellia]
          Length = 602

 Score = 60.9 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           YK+  ++GP H P FT+ VE+       G   SK+ A   AAA  L+
Sbjct: 67  YKLESQTGPVHAPLFTISVEVDDQKY-YGQGRSKKIARIEAAATALR 112


>gi|241718568|ref|XP_002403965.1| adenosine deaminase acting on RNA (adar)-1, putative [Ixodes
           scapularis]
 gi|215505279|gb|EEC14773.1| adenosine deaminase acting on RNA (adar)-1, putative [Ixodes
           scapularis]
          Length = 503

 Score = 60.9 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 1/73 (1%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
               ++  +   E+   +  V  +  +    GP H+PRF  V  +     A+  D +K+ 
Sbjct: 10  ASLTKNPVSAFHEFGQMQH-VEAKIDIVATDGPPHNPRFKAVAFLDKKPVAEAWDKTKKE 68

Query: 211 AEQVAAAEVLKRE 223
           A+  AA    ++ 
Sbjct: 69  AKHQAAELAFRKL 81


>gi|254572081|ref|XP_002493150.1| Mitochondrial ribosomal protein of the large subunit [Pichia
           pastoris GS115]
 gi|238032948|emb|CAY70971.1| Mitochondrial ribosomal protein of the large subunit [Pichia
           pastoris GS115]
 gi|328352834|emb|CCA39232.1| 54S ribosomal protein L3, mitochondrial [Pichia pastoris CBS 7435]
          Length = 355

 Score = 60.9 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 68/238 (28%), Gaps = 38/238 (15%)

Query: 23  LEKALTHSSISHSYQE--SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
           L + LT  S ++          L   G  +L    +  L   +       L+   +S + 
Sbjct: 87  LARGLTCRSNTNKENGLADNFGLSLFGKNLLTYYATEYLIVKYPRLPLSILNAAVDSYIG 146

Query: 81  AETCSQVAREL---------DLASFIRV-------------SSDLRKDVC---------- 108
                 + + +         DL  ++               SS   K+            
Sbjct: 147 KYALLDLGKNIWGIEEDTKSDLTKYLNNEPKEYAFGKLRYDSSVEEKEDGIVAISKESAL 206

Query: 109 -SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWA 165
                S  A  V S+IA +Y   G      F++ +   R L             +L    
Sbjct: 207 KMDKASAYASAVRSIIAGIYAHDGESETKKFINSHILSRKLDIASMFEFTQPIRQLSRLL 266

Query: 166 HAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             +    P  ++   +G    +P F V +        +G   S   A+  A    LK+
Sbjct: 267 QRENLPAPTSRLIAENGRLSSNPIFIVGIFSGNDKLGEGQGPSILKAKTDACINSLKQ 324


>gi|159473675|ref|XP_001694959.1| dicer-like protein [Chlamydomonas reinhardtii]
 gi|158276338|gb|EDP02111.1| dicer-like protein [Chlamydomonas reinhardtii]
          Length = 1927

 Score = 60.9 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 20/103 (19%)

Query: 15   YAFANRSLLEKALTHSSIS------------------HSYQESYERLEFLGDRILGLLIS 56
            Y F + +L   ALTH S                          Y+ LEFLGD ++GLL S
Sbjct: 1650 YQFHDPALALCALTHVSWPVPPVSSSGKGLDAGAGSGGGSGGHYQLLEFLGDAVVGLLAS 1709

Query: 57   TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99
              L+ +       ++S+    LV  +T +       L++ +RV
Sbjct: 1710 --LWAYSLGGSPRDMSMTREMLVRNDTLAACCLGSRLSTALRV 1750



 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 36/103 (34%), Gaps = 18/103 (17%)

Query: 41   ERLEFLGDRILGLLISTLLFNHFDSAK---EGELSVRFNSLVSAETCSQVARELDLASFI 97
            ERLE LGD +L  L +  ++          EG +S + + LV+ E     A E  L   +
Sbjct: 1402 ERLETLGDAVLKYLATLYVYGTERDVPVSHEGVMSYKRDQLVANEALYGRALEAGLQHHM 1461

Query: 98   RVSS--DLRKDVCSF-------------MTSIQADVVESLIAA 125
            R       R                        AD VE+L+  
Sbjct: 1462 RALPYDMERVLRGRHWNTGEEAARAQEVRGKRLADCVEALVGC 1504


>gi|169665428|gb|ACA63429.1| dicer-like 1 protein [Chlamydomonas reinhardtii]
          Length = 2243

 Score = 60.9 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 20/103 (19%)

Query: 15   YAFANRSLLEKALTHSSIS------------------HSYQESYERLEFLGDRILGLLIS 56
            Y F + +L   ALTH S                          Y+ LEFLGD ++GLL S
Sbjct: 1842 YQFHDPALALCALTHVSWPVPPVSSSGKGLDAGAGSGGGSGGHYQLLEFLGDAVVGLLAS 1901

Query: 57   TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99
              L+ +       ++S+    LV  +T +       L++ +RV
Sbjct: 1902 --LWAYSLGGSPRDMSMTREMLVRNDTLAACCLGSRLSTALRV 1942



 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 36/103 (34%), Gaps = 18/103 (17%)

Query: 41   ERLEFLGDRILGLLISTLLFNHFDSAK---EGELSVRFNSLVSAETCSQVARELDLASFI 97
            ERLE LGD +L  L +  ++          EG +S + + LV+ E     A E  L   +
Sbjct: 1594 ERLETLGDAVLKYLATLYVYGTERDVPVSHEGVMSYKRDQLVANEALYGRALEAGLQHHM 1653

Query: 98   RVSS--DLRKDVCSF-------------MTSIQADVVESLIAA 125
            R       R                        AD VE+L+  
Sbjct: 1654 RALPYDMERVLRGRHWNTGEEAARAQEVRGKRLADCVEALVGC 1696


>gi|198470865|ref|XP_001355419.2| GA11711 [Drosophila pseudoobscura pseudoobscura]
 gi|198145657|gb|EAL32477.2| GA11711 [Drosophila pseudoobscura pseudoobscura]
          Length = 633

 Score = 60.9 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           YK+  ++GP H P FT+ VE+ G     G   SK+ A   AAA  L+
Sbjct: 72  YKLESQTGPVHAPLFTISVEVDGQKY-MGQGRSKKVARIEAAATALR 117


>gi|195403581|ref|XP_002060356.1| GJ18414 [Drosophila virilis]
 gi|194147402|gb|EDW63114.1| GJ18414 [Drosophila virilis]
          Length = 633

 Score = 60.9 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           YK+  ++GP H P FT+ VE+ G     G   SK+ A   AAA  L+
Sbjct: 72  YKLESQTGPVHAPLFTISVEVDGQKY-MGQGRSKKVARIEAAATALR 117


>gi|195162123|ref|XP_002021905.1| GL14352 [Drosophila persimilis]
 gi|194103803|gb|EDW25846.1| GL14352 [Drosophila persimilis]
          Length = 619

 Score = 60.9 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           YK+  ++GP H P FT+ VE+ G     G   SK+ A   AAA  L+
Sbjct: 72  YKLESQTGPVHAPLFTISVEVDGQKY-MGQGRSKKVARIEAAATALR 117


>gi|195133919|ref|XP_002011386.1| GI16028 [Drosophila mojavensis]
 gi|193907361|gb|EDW06228.1| GI16028 [Drosophila mojavensis]
          Length = 633

 Score = 60.9 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           YK+  ++GP H P FT+ VE+ G     G   SK+ A   AAA  L+
Sbjct: 72  YKLESQTGPVHAPLFTISVEVDGQKY-MGQGRSKKVARIEAAATALR 117


>gi|189182361|gb|ACD81882.1| dicer-like nuclease 1 [Chlamydomonas reinhardtii]
          Length = 2236

 Score = 60.9 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 20/103 (19%)

Query: 15   YAFANRSLLEKALTHSSIS------------------HSYQESYERLEFLGDRILGLLIS 56
            Y F + +L   ALTH S                          Y+ LEFLGD ++GLL S
Sbjct: 1842 YQFHDPALALCALTHVSWPVPPVSSSGKGLDAGAGSGGGSGGHYQLLEFLGDAVVGLLAS 1901

Query: 57   TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRV 99
              L+ +       ++S+    LV  +T +       L++ +RV
Sbjct: 1902 --LWAYSLGGSPRDMSMTREMLVRNDTLAACCLGSRLSTALRV 1942



 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 36/103 (34%), Gaps = 18/103 (17%)

Query: 41   ERLEFLGDRILGLLISTLLFNHFDSAK---EGELSVRFNSLVSAETCSQVARELDLASFI 97
            ERLE LGD +L  L +  ++          EG +S + + LV+ E     A E  L   +
Sbjct: 1594 ERLETLGDAVLKYLATLYVYGTERDVPVSHEGVMSYKRDQLVANEALYGRALEAGLQHHM 1653

Query: 98   RVSS--DLRKDVCSF-------------MTSIQADVVESLIAA 125
            R       R                        AD VE+L+  
Sbjct: 1654 RALPYDMERVLRGRHWNTGEEAARAQEVRGKRLADCVEALVGC 1696


>gi|12597661|ref|NP_075066.1| 39S ribosomal protein L44, mitochondrial precursor [Homo sapiens]
 gi|51316917|sp|Q9H9J2|RM44_HUMAN RecName: Full=39S ribosomal protein L44, mitochondrial;
           Short=L44mt; Short=MRP-L44; Flags: Precursor
 gi|10434358|dbj|BAB14234.1| unnamed protein product [Homo sapiens]
 gi|15082305|gb|AAH12058.1| Mitochondrial ribosomal protein L44 [Homo sapiens]
 gi|48146703|emb|CAG33574.1| MRPL44 [Homo sapiens]
 gi|62822376|gb|AAY14925.1| unknown [Homo sapiens]
 gi|119591225|gb|EAW70819.1| mitochondrial ribosomal protein L44, isoform CRA_a [Homo sapiens]
 gi|119591226|gb|EAW70820.1| mitochondrial ribosomal protein L44, isoform CRA_a [Homo sapiens]
 gi|325463573|gb|ADZ15557.1| mitochondrial ribosomal protein L44 [synthetic construct]
          Length = 332

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 65/191 (34%), Gaps = 11/191 (5%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
           +S + L   G       ++  L + +       +    + L   E    VAR L +   +
Sbjct: 120 KSNQELSEQGTSFSQTCLTQFLEDEYPDMPTEGIKNLVDFLTGEEVVCHVARNLAVEQ-L 178

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-- 155
            +S +          ++      ++I AL    G E    F+  +   +      F    
Sbjct: 179 TLSEEFPVP-----PAVLQQTFFAVIGALLQSSGPERTALFIRDFLITQMTGKELFEMWK 233

Query: 156 --DAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAE 212
             +    L E    +    PE ++T +SG     P + V +       A+G   +   AE
Sbjct: 234 IINPMGLLVEELKKRNVSAPESRLTRQSGGTTALPLYFVGLYCDKKLIAEGPGETVLVAE 293

Query: 213 QVAAAEVLKRE 223
           + AA   L++ 
Sbjct: 294 EEAARVALRKL 304


>gi|73961632|ref|XP_547564.2| PREDICTED: similar to adenosine deaminase, RNA-specific isoform b
           [Canis familiaris]
          Length = 1119

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  T L E  H K G + E+++  R GP HDP+F   V +           SK+ A+Q+
Sbjct: 532 KNPVTTLLECVH-KLGSSCEFRLLSREGPAHDPKFQYCVAMGAHTFPTVSAPSKKVAKQM 590

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 591 AAEEAMKAL 599



 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E+A      T E+ +  +SGP H+PRF   V I G         SK+ A+Q 
Sbjct: 421 KNPISGLLEYAQ-FASQTCEFNLLEQSGPPHEPRFKFQVIIGGREFPPAEAGSKKVAKQD 479

Query: 215 AAAEVL 220
           AA + +
Sbjct: 480 AALKAM 485



 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+  +Q AA   L
Sbjct: 650 LLEYARSHGFAA-EFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAAL 708

Query: 221 K 221
           +
Sbjct: 709 R 709


>gi|145551869|ref|XP_001461611.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124429446|emb|CAK94238.1| unnamed protein product [Paramecium tetraurelia]
          Length = 313

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 91/242 (37%), Gaps = 35/242 (14%)

Query: 16  AFANRSLLEKAL---THSS-ISHSYQE-----SYERLEFLGDRILGLLISTL-LFNHFDS 65
            F N+ LL +AL    H +       +     + E     G +++        L   F +
Sbjct: 7   EFRNQKLLVQALSNKIHETEYFQKTGKLYQYGNNEEFSIDGQQLIEFYFYDYMLLQGFPN 66

Query: 66  -----AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                 K  ++      L++ +  S++A  L+L + + V +   +        + +D ++
Sbjct: 67  QQSQFKKPSDIIQLRQRLINDKYLSEIATLLNLQNLVSVGN---QKSLKNNPKVLSDCLK 123

Query: 121 SLIAALYLD--GGIEVAGTFVDKYWKQ-----RALKSGKFRRDAKTELQEWA-HAKFGVT 172
           S+I A Y D    +EV    +     Q     + +   K++ + K+   E+    K  + 
Sbjct: 124 SVIGAHYYDKQNDLEVLRDLIHPIIAQLLNKGQEIGLKKWKYNPKSSFLEFLNQYKGQLG 183

Query: 173 PEYKVTFRSGPD------HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV---LKRE 223
              K+T     D      ++  + + +E++     Q +  +KR  EQ    E    L++ 
Sbjct: 184 INPKLTIEWKKDDTILNQNNSYYQITLELNSNFQIQKIGINKRETEQNVYQEALVYLRKL 243

Query: 224 GI 225
            I
Sbjct: 244 NI 245


>gi|189236536|ref|XP_975506.2| PREDICTED: similar to neuron-specific staufen [Tribolium castaneum]
          Length = 425

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
           K     +   T + E A        E+ V   SG  H   F    ++      +G   SK
Sbjct: 224 KLKDDLKSPITRVHEAAQLNNLAL-EFNVISESGKPHQRNFVTECKLGDYV-TEGEGRSK 281

Query: 209 RAAEQVAAAEVLK 221
           + +++VAA ++L+
Sbjct: 282 KESKRVAAEKMLQ 294



 Score = 45.1 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 2/48 (4%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
           E A     +   Y +    GP H   F V + +      +G   S + 
Sbjct: 24  ELAQFN-EIECSYTLISEEGPPHAKIFKVSLHLGDELY-EGSGSSLKK 69


>gi|315046170|ref|XP_003172460.1| hypothetical protein MGYG_05052 [Arthroderma gypseum CBS 118893]
 gi|311342846|gb|EFR02049.1| hypothetical protein MGYG_05052 [Arthroderma gypseum CBS 118893]
          Length = 636

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 60/142 (42%), Gaps = 7/142 (4%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           S      +E  +GY F ++ LL KALT +    +  +   RL  LG  ++  L+  + + 
Sbjct: 3   SKTSIRPVEDIVGYTFKSKPLLLKALTAAGSELNDYDGNRRLAQLGTALVEFLLVYIGYR 62

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
              +      +        ++  + VA+   + S+I  SS       +   ++ A  + +
Sbjct: 63  Q--NVPRDHTTRFKIRFGGSKHRAAVAKRTGIDSYISYSS----RSGAKAPTVLAKSLNA 116

Query: 122 LIAALYLDG-GIEVAGTFVDKY 142
           +IAA ++D   I VA   + + 
Sbjct: 117 IIAATFVDSRDIAVAFRAMLRL 138


>gi|201023367|ref|NP_001128425.1| R2D2 protein [Tribolium castaneum]
 gi|270009455|gb|EFA05903.1| hypothetical protein TcasGA2_TC008716 [Tribolium castaneum]
          Length = 320

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 154 RRDAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
           R++ KT    LQE+   +    PEY +       H+  F   V ++      G   SK+ 
Sbjct: 3   RQNTKTPAMVLQEFTMKRGFSPPEYILVMSKTGTHENEFHYKVNVAN-VCGLGFGRSKQV 61

Query: 211 AEQVAAAEVLK 221
           A+  AA++ L+
Sbjct: 62  AKHNAASKALE 72



 Score = 58.9 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
               PE+K     GP H   FT    I+ +   Q    +K+ A+Q+AA E+L++
Sbjct: 121 KLPYPEFKEISDVGPPHCREFTYECCIASIT-TQATANTKKQAKQLAAREMLEK 173


>gi|10436325|dbj|BAB14802.1| unnamed protein product [Homo sapiens]
          Length = 332

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 65/191 (34%), Gaps = 11/191 (5%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
           +S + L   G       ++  L + +       +    + L   E    VAR L +   +
Sbjct: 120 KSNQELSEQGTSFSQTCLTQFLEDEYPDMPTEGIKNLVDFLTGEEVVCHVARNLAVEQ-L 178

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-- 155
            +S +          ++      ++I AL    G E    F+  +   +      F    
Sbjct: 179 TLSEEFPVP-----PAVLQQTFFAVIGALLQSSGPERTALFIRDFLITQMTGKELFEMRK 233

Query: 156 --DAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAE 212
             +    L E    +    PE ++T +SG     P + V +       A+G   +   AE
Sbjct: 234 IINPMGLLVEELKKRNVSAPESRLTRQSGGTTALPLYFVGLYCDKKLIAEGPGETVLVAE 293

Query: 213 QVAAAEVLKRE 223
           + AA   L++ 
Sbjct: 294 EEAARVALRKL 304


>gi|242059029|ref|XP_002458660.1| hypothetical protein SORBIDRAFT_03g037610 [Sorghum bicolor]
 gi|241930635|gb|EES03780.1| hypothetical protein SORBIDRAFT_03g037610 [Sorghum bicolor]
          Length = 529

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 45/128 (35%), Gaps = 6/128 (4%)

Query: 22  LLEKALTH------SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
           LL  A  H       + +   +  + RL FLG  +L L         +     G +  R 
Sbjct: 160 LLYLAFQHLDPSSERTRTRHVRNGHSRLWFLGQYVLELAFCEFFLQRYPRESPGPMRERV 219

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
            +L+  +   +  +   L + +    DL K +          V  +L  A+YL  G+   
Sbjct: 220 FALIGKKVLPRWLKAASLHNLVFPYDDLDKMIRKDREPPSKAVFWALFGAIYLCFGMPEV 279

Query: 136 GTFVDKYW 143
              + + +
Sbjct: 280 YRVLFEAF 287



 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 48/145 (33%), Gaps = 10/145 (6%)

Query: 18  ANRSL---LEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            N  L   L+    H S       +  YERLE++G +I  L+++  L      A    L+
Sbjct: 386 RNIELGLGLQLCFLHPSKHKFEHPRFCYERLEYVGQKIQDLVMAERLLMKHLDAPGRWLA 445

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSS----DLRKDVCSFMTSIQADVVESLIAALYL 128
            +    +  + C +  R+  L  +I            +      S    V ++L    Y 
Sbjct: 446 EKHRRTLMNKYCGRYLRDKHLQHYIIYGETVQDRFEHNRRLRNPST-TSVQQALHGLAYC 504

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKF 153
             G       + + +    ++    
Sbjct: 505 VYGKPDVRRLMFEVFDFEQVQPKAV 529


>gi|195027427|ref|XP_001986584.1| GH20445 [Drosophila grimshawi]
 gi|193902584|gb|EDW01451.1| GH20445 [Drosophila grimshawi]
          Length = 1053

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 3/88 (3%)

Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVV 193
              ++   K++         +  T+L +    +    P +++  ++G +   R  F + V
Sbjct: 719 RKRLNATVKEKPAVELDEDENPITKLIQLQQTRKEKEPIFELIAKNGNESSRRREFVIEV 778

Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             SG   A+G   SK+ A++ AA  +L+
Sbjct: 779 CASGN-IARGTGNSKKLAKRNAAQALLE 805



 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y++T   GP H   FTV +++             + A+ +AA++ ++
Sbjct: 343 QYRLTGERGPAHCKTFTVTLKLGEEEY-SADGFKIKKAQHLAASKAIE 389



 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +  +T  +KV    GP H   F     + G    +G    K+ +++ +A ++L
Sbjct: 613 RRNMTVHFKVLREEGPAHMKNFITACIV-GAIVTEGEGNGKKLSKKRSAEKML 664


>gi|158285608|ref|XP_308394.4| AGAP007478-PA [Anopheles gambiae str. PEST]
 gi|157020074|gb|EAA04622.5| AGAP007478-PA [Anopheles gambiae str. PEST]
          Length = 1149

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 3/93 (3%)

Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPD--HDPRFTV 191
            A        K++++     + +  + L +   A+    P Y +     P      +FT+
Sbjct: 856 TAKKKARNLIKEKSVADVAEKENPISRLMQIQQARKEKQPVYTLQENDRPAVGRRRQFTI 915

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            V   G   A G+  +K+AA+  AA  +L   G
Sbjct: 916 EVSAGGRQ-ATGVGMTKKAAKWNAAEALLIELG 947



 Score = 58.2 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +Y++T  SGP H   FTV++++           S + A+  AA + +
Sbjct: 440 QYRLTGESGPAHKKHFTVMLKLGDEEY-TAEGASIKKAQHKAAGDAI 485



 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 2/76 (2%)

Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           L      +   + + E A  +   +  ++V    GP H   F    ++ G    +G    
Sbjct: 739 LDPNAELKSPISLVHEIAVQRSL-SVVFEVISEKGPPHMTVFVTQCKV-GTIVTEGEGTG 796

Query: 208 KRAAEQVAAAEVLKRE 223
           K+ +++ AA ++L+  
Sbjct: 797 KKLSKKRAAEKMLEEL 812


>gi|261201536|ref|XP_002627982.1| 60S ribosomal protein L3 [Ajellomyces dermatitidis SLH14081]
 gi|239590079|gb|EEQ72660.1| 60S ribosomal protein L3 [Ajellomyces dermatitidis SLH14081]
          Length = 400

 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 85/284 (29%), Gaps = 67/284 (23%)

Query: 1   MSALRYSTLEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58
           +++ + S +  R+        L  L + L   S   + Q + + L  LG  +L    S  
Sbjct: 117 LNSAKLSAIHARLSL-PQRLPLQTLARTLVDESADPTPQFNNKSLSILGGDLLTYYTSEY 175

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLA--------------SFIRV----- 99
           L + +       L     S + A+  + + RE  L                F R+     
Sbjct: 176 LISTYPRLPVKVLWAAMYSYIGAKPLAAMTREWGLEFAAEPGPEVDPGLLQFKRLPPDTV 235

Query: 100 ------SSDLRKDVCSFMTS-----IQADVV------------------------ESLIA 124
                  + LR+D      S     I  D                           +++ 
Sbjct: 236 VETNSNGTFLRRDGGLSKRSTSARIIYGDAFGESALPYPVHREGVTPNRACANFVRAIVG 295

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YL  G   A  F  +++  R L        R    +L +    +    P  K+   +G
Sbjct: 296 AVYLHAGRPAAKQFYKEHFTSRHLDMASLFSFRQPTRDLSKLCRREGFEDPVAKILSETG 355

Query: 183 P-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
              + P F V +        +G   S +          L+  G+
Sbjct: 356 RLSNRPVFNVGIFSGPDKLGEGAGGSLK-------RSALQSRGV 392


>gi|301766360|ref|XP_002918599.1| PREDICTED: 39S ribosomal protein L44, mitochondrial-like
           [Ailuropoda melanoleuca]
 gi|281343634|gb|EFB19218.1| hypothetical protein PANDA_007087 [Ailuropoda melanoleuca]
          Length = 330

 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 65/191 (34%), Gaps = 11/191 (5%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
           +  + L   G       ++  L + +       +    + L   E    VAR L +   +
Sbjct: 118 KDNQELSEQGTSFSKTCLTQFLEDAYPDLPREGIKSLVDFLTGEEVVCHVARNLAVEQ-L 176

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-- 155
            +S++        +  +      ++I AL    G E    F+  +   +      F    
Sbjct: 177 TLSAEFPV-----LPPVLQRTFFAVIGALLQSSGPERTALFIRDFLITQMTGKELFEIWK 231

Query: 156 --DAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAE 212
             +    L E    +    PE ++T +SG     P F V +       A+G   +   AE
Sbjct: 232 IINPMGLLVEELKKRNISAPESRLTRQSGSTTALPVFFVGLYCDKKLIAEGPGETVLVAE 291

Query: 213 QVAAAEVLKRE 223
           + AA   L++ 
Sbjct: 292 EEAARVALRKL 302


>gi|254693019|gb|ACT79359.1| RE17094p [Drosophila melanogaster]
          Length = 392

 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           YK+  ++GP H P FT+ VE+ G     G   SK+ A   AAA  L+
Sbjct: 71  YKLESQTGPVHAPLFTISVEVDGQKY-LGQGRSKKVARIEAAATALR 116


>gi|240268596|gb|ACS52172.1| ADARe2 [Drosophila melanogaster]
 gi|260166757|gb|ACX32990.1| LD32961p [Drosophila melanogaster]
          Length = 392

 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           YK+  ++GP H P FT+ VE+ G     G   SK+ A   AAA  L+
Sbjct: 71  YKLESQTGPVHAPLFTISVEVDGQKY-LGQGRSKKVARIEAAATALR 116


>gi|240268594|gb|ACS52171.1| ADARe1 [Drosophila melanogaster]
          Length = 355

 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           YK+  ++GP H P FT+ VE+ G     G   SK+ A   AAA  L+
Sbjct: 71  YKLESQTGPVHAPLFTISVEVDGQKY-LGQGRSKKVARIEAAATALR 116


>gi|195469794|ref|XP_002099821.1| GE16707 [Drosophila yakuba]
 gi|194187345|gb|EDX00929.1| GE16707 [Drosophila yakuba]
          Length = 632

 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           YK+  ++GP H P FT+ VE+ G     G   SK+ A   AAA  L+
Sbjct: 71  YKLESQTGPVHAPLFTISVEVDGQKY-LGQGRSKKVARIEAAATALR 116


>gi|194912620|ref|XP_001982542.1| GG12877 [Drosophila erecta]
 gi|190648218|gb|EDV45511.1| GG12877 [Drosophila erecta]
          Length = 632

 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           YK+  ++GP H P FT+ VE+ G     G   SK+ A   AAA  L+
Sbjct: 71  YKLESQTGPVHAPLFTISVEVDGQKY-LGQGRSKKVARIEAAATALR 116


>gi|156357520|ref|XP_001624265.1| predicted protein [Nematostella vectensis]
 gi|156211031|gb|EDO32165.1| predicted protein [Nematostella vectensis]
          Length = 118

 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 1/75 (1%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKR 209
            K  +   + LQE    K    P++++ F  GP H  +F   V ++G     Q +  +K+
Sbjct: 36  EKPGKHPISMLQEICARKKWQLPDFQLIFDHGPPHSKQFLFKVAVNGYEYQPQVVSSNKK 95

Query: 210 AAEQVAAAEVLKREG 224
            A+   A   LK  G
Sbjct: 96  QAKAQCALYALKAIG 110


>gi|4164311|emb|CAA22774.1| EG:BACN35H14.1 [Drosophila melanogaster]
          Length = 653

 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           YK+  ++GP H P FT+ VE+ G     G   SK+ A   AAA  L+
Sbjct: 71  YKLESQTGPVHAPLFTISVEVDGQKY-LGQGRSKKVARIEAAATALR 116


>gi|7546827|gb|AAF63703.1| double-stranded RNA-specific adenosine deaminase a [Drosophila
           melanogaster]
          Length = 632

 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           YK+  ++GP H P FT+ VE+ G     G   SK+ A   AAA  L+
Sbjct: 71  YKLESQTGPVHAPLFTISVEVDGQKY-LGQGRSKKVARIEAAATALR 116


>gi|7546826|gb|AAF63702.1| alternative double-stranded RNA-specific adenosine deaminase b
           [Drosophila melanogaster]
          Length = 669

 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           YK+  ++GP H P FT+ VE+ G     G   SK+ A   AAA  L+
Sbjct: 71  YKLESQTGPVHAPLFTISVEVDGQKY-LGQGRSKKVARIEAAATALR 116


>gi|85724778|ref|NP_001033821.1| adenosine deaminase acting on RNA, isoform C [Drosophila
           melanogaster]
 gi|84798392|gb|ABC67164.1| adenosine deaminase acting on RNA, isoform C [Drosophila
           melanogaster]
 gi|294712595|gb|ADF29633.1| SD06892p [Drosophila melanogaster]
          Length = 186

 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           YK+  ++GP H P FT+ VE+ G     G   SK+ A   AAA  L+
Sbjct: 71  YKLESQTGPVHAPLFTISVEVDGQKY-LGQGRSKKVARIEAAATALR 116


>gi|45551201|ref|NP_726761.2| adenosine deaminase acting on RNA, isoform B [Drosophila
           melanogaster]
 gi|45446775|gb|AAN09057.2| adenosine deaminase acting on RNA, isoform B [Drosophila
           melanogaster]
          Length = 628

 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           YK+  ++GP H P FT+ VE+ G     G   SK+ A   AAA  L+
Sbjct: 67  YKLESQTGPVHAPLFTISVEVDGQKY-LGQGRSKKVARIEAAATALR 112


>gi|24639162|ref|NP_569940.2| adenosine deaminase acting on RNA, isoform A [Drosophila
           melanogaster]
 gi|13448047|gb|AAK26850.1| pre-mRNA adenosine deaminase [Drosophila melanogaster]
 gi|22831515|gb|AAF45665.2| adenosine deaminase acting on RNA, isoform A [Drosophila
           melanogaster]
          Length = 632

 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           YK+  ++GP H P FT+ VE+ G     G   SK+ A   AAA  L+
Sbjct: 71  YKLESQTGPVHAPLFTISVEVDGQKY-LGQGRSKKVARIEAAATALR 116


>gi|61218669|sp|Q9NII1|ADAR_DROME RecName: Full=Double-stranded RNA-specific editase Adar; AltName:
           Full=Adenosine deaminase that act on RNA; AltName:
           Full=Pre-mRNA adenosine deaminase; AltName:
           Full=RNA-editing deaminase 1; AltName: Full=RNA-editing
           enzyme 1; AltName: Full=dADAR; AltName: Full=dsRNA
           adenosine deaminase
          Length = 676

 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           YK+  ++GP H P FT+ VE+ G     G   SK+ A   AAA  L+
Sbjct: 78  YKLESQTGPVHAPLFTISVEVDGQKY-LGQGRSKKVARIEAAATALR 123


>gi|320333355|ref|YP_004170066.1| double-stranded RNA-binding domain-containing protein [Deinococcus
           maricopensis DSM 21211]
 gi|319754644|gb|ADV66401.1| double-stranded RNA binding domain protein [Deinococcus
           maricopensis DSM 21211]
          Length = 148

 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           AK EL           P + V  + GP HDP F   + +     A G   +KR AE+VA+
Sbjct: 3   AKGELINRLRHLGLDAPHFDV-QQDGPAHDPHFRADIRVGSQILASGEGRTKRDAERVAS 61

Query: 217 AEVL 220
              L
Sbjct: 62  EAAL 65


>gi|321253836|ref|XP_003192868.1| hypothetical protein CGB_C5540W [Cryptococcus gattii WM276]
 gi|317459337|gb|ADV21081.1| hypothetical protein CNC03670 [Cryptococcus gattii WM276]
          Length = 972

 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 61/196 (31%), Gaps = 38/196 (19%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
           + +GY F +    E A +  S +   ++  ER + +G+ +L L +  LL + +       
Sbjct: 699 EVLGYKFKDNKKFEDAFS-LSPAQQTKKIRERYKMMGNALLDLYVIELLMDTYPDEGPAS 757

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIR----VSSDLRKDVCSFMTS------------- 113
           LSV   S  +      +A EL +   I      S    K    FM               
Sbjct: 758 LSVMKLSRTTEGLRCALAVELGMPDLIIDGDDHSRSELKRATHFMQKAKAQADENLNESE 817

Query: 114 --------------IQADVVESLIAALYLDGGI--EVAGTF----VDKYWKQRALKSGKF 153
                         +   ++E L  A++ D     E         V  +  +    S  F
Sbjct: 818 QGGVHYWEEVVISRVNGSILEILFGAIFDDCNFSLEPTQKIFSERVAPFLAKYCRGSNGF 877

Query: 154 RRDAKTELQEWAHAKF 169
               K  L  W   K 
Sbjct: 878 DPHPKAMLTRWMQKKG 893



 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 66/182 (36%), Gaps = 42/182 (23%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           MSA  ++++         +  L  +A+T +   +  + +YERLE LGD +L  + +   +
Sbjct: 489 MSAKEFNSIL--------DPELALQAITAAEGLNVPRWTYERLEILGDTLLKFITTLHFY 540

Query: 61  NHFDSA-KEGELSVR---FNSLVSAETCSQVARELDLASFIRVSSDLRK----------- 105
                A  E +++      + L+S  T +  A +  L  +IR      K           
Sbjct: 541 LLGGGADSEVDMNKVWQDRHMLISNRTLTANAVKQGLVKYIRNKKFKVKEWTPRDWELDL 600

Query: 106 ---------------DVCSFM---TSIQADVVESLIAALYL-DGGIEVAGTFVDKYWKQR 146
                          D          + AD++E++I A Y+ +  ++     +       
Sbjct: 601 PPGQFTPKKAMPTSFDGPESRTLGDKVIADIIEAIIGASYVHNKDLDNVIAILHNLMVPL 660

Query: 147 AL 148
            L
Sbjct: 661 NL 662


>gi|327506438|gb|AEA92657.1| RNase3 [Sweet potato chlorotic stunt virus]
          Length = 228

 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 78/218 (35%), Gaps = 37/218 (16%)

Query: 29  HS--SISHS--YQESYERLEFLGDRILGLLISTLLFNHFD-SAKEGELSVRFNSLVSAET 83
           H   SI HS       +R E LGD  +   ++ +L + F  +A    LS+     +S   
Sbjct: 21  HRLDSIVHSVCTSGDRDRYEILGDWAVASYVTRMLTDLFKHNADAESLSLLRAHNISNVM 80

Query: 84  CSQVARELDL--ASFIRVSSDLRK------DVCSF----MTSIQADVVESLIAALYLDGG 131
            ++V  E  L    ++ ++ D  +                    A+  E ++  L +   
Sbjct: 81  FAKVMVESKLFEDFYLWLTPDQMQLCRKTFAGGRGLYEVNVKFLANYFERIVGWLVVHDC 140

Query: 132 IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT----PEYKVTFRSGPDHDP 187
            E    F+D + K     S   ++ A++ L+EWA            EY V          
Sbjct: 141 SESVEKFLDLFLKPHM--SFHIKKPARSILEEWAMKNNKRLDIHTGEYNVNK-------- 190

Query: 188 RFTVVVEISGLAPAQGMDC-SKRAAEQVA---AAEVLK 221
              V V + G   ++  D  SK+ A   A   A E L 
Sbjct: 191 --VVYVLVDGQKVSRASDLISKKRAISKAVSIAVEALN 226


>gi|242069681|ref|XP_002450117.1| hypothetical protein SORBIDRAFT_05g000790 [Sorghum bicolor]
 gi|241935960|gb|EES09105.1| hypothetical protein SORBIDRAFT_05g000790 [Sorghum bicolor]
          Length = 292

 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 6/64 (9%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFR-SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           K  LQE+A       P Y  T + SGP     F   VEI G+        +K+ AE  AA
Sbjct: 94  KNLLQEYAQKMNYAIPSYICTKQASGP-----FICSVEIGGILYIGAAARTKKGAEIKAA 148

Query: 217 AEVL 220
              L
Sbjct: 149 RTAL 152


>gi|296205725|ref|XP_002749884.1| PREDICTED: 39S ribosomal protein L44, mitochondrial-like
           [Callithrix jacchus]
          Length = 331

 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 65/191 (34%), Gaps = 11/191 (5%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
           +S + L   G       ++  L + F       +    + L   E    VAR L +   +
Sbjct: 120 KSNQELSEQGTSFSKTCLTQFLEDEFPDLPTEGIRSLVDFLTGEEVVCHVARNLAVEQ-L 178

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-- 155
            +S +          ++      +++ AL    G E    F+  +   +      F    
Sbjct: 179 TLSEEFPVP-----PTVLQQTFFAVVGALLQSSGPERTALFIRDFLITQMTGKELFEMWK 233

Query: 156 --DAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAE 212
             +    L E    +    PE ++T +SG     P + V +       A+G   +   AE
Sbjct: 234 IINPMGLLVEELKKRNISLPESRLTRQSGGTTALPLYFVGLYCDKKLIAEGPGETVLVAE 293

Query: 213 QVAAAEVLKRE 223
           + AA   L++ 
Sbjct: 294 EEAARVALRKL 304


>gi|126307762|ref|XP_001373191.1| PREDICTED: similar to adenosine deaminase, RNA-specific
           [Monodelphis domestica]
          Length = 1131

 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 1/71 (1%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           F ++  + L E      G T E+ +  + GP HDP+F   V++        M  SK+AA+
Sbjct: 544 FGKNPISVLMEHVQKN-GSTCEFLLISQEGPAHDPKFKYCVKMGSQTFPTMMANSKKAAK 602

Query: 213 QVAAAEVLKRE 223
           Q+AA   +K  
Sbjct: 603 QMAAEVAVKAL 613



 Score = 58.5 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
           +++  + L E+A      T E+ +  +SGP H+PRF     ISG         SK+ A Q
Sbjct: 433 QKNPISGLLEYAQFT-CQTCEFTLLEQSGPSHEPRFKYQAVISGRRFPPAEAGSKKLARQ 491

Query: 214 VAAAEVL 220
            AAA+ +
Sbjct: 492 DAAAKAM 498



 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + L E+A +      E+K+  +SGP H+P+F    ++ G         SK+  +Q A
Sbjct: 654 NPISGLFEYARSNGFAA-EFKLVDQSGPPHEPKFIYQAKVGGRWFPAVSAHSKKQGKQEA 712

Query: 216 AAEVLK 221
           A   L+
Sbjct: 713 ADAALR 718


>gi|22550319|ref|NP_689397.1| putative ribonuclease III [Sweet potato chlorotic stunt virus]
 gi|22535415|emb|CAD21943.1| putative ribonuclease III [Sweet potato chlorotic stunt virus]
 gi|158323836|gb|ABW34422.1| RNase3 class I protein [Sweet potato chlorotic stunt virus]
          Length = 228

 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 78/218 (35%), Gaps = 37/218 (16%)

Query: 29  HS--SISHS--YQESYERLEFLGDRILGLLISTLLFNHFD-SAKEGELSVRFNSLVSAET 83
           H   SI HS       +R E LGD  +   ++ +L + F  +A    LS+     +S   
Sbjct: 21  HRLDSIVHSICTSGDRDRYEILGDWAVASYVTRMLTDLFKHNADAESLSLLRAHNISNVM 80

Query: 84  CSQVARELDL--ASFIRVSSDLRK------DVCSF----MTSIQADVVESLIAALYLDGG 131
            ++V  E  L    ++ ++ D  +                    A+  E ++  L +   
Sbjct: 81  FAKVMVESKLFEDFYLWLTPDQMQLCRKTFAGGRSLYEVNVKFLANYFERIVGWLVVHDC 140

Query: 132 IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT----PEYKVTFRSGPDHDP 187
            E    F+D + K     S   ++ A++ L+EWA            EY V          
Sbjct: 141 SESVEKFLDLFLKPHM--SFHIKKPARSILEEWAMKNNKRLDIHTGEYNVNK-------- 190

Query: 188 RFTVVVEISGLAPAQGMDC-SKRAAEQVA---AAEVLK 221
              V V + G   ++  D  SK+ A   A   A E L 
Sbjct: 191 --VVYVLVDGQEVSRASDLISKKRAISKAVSFAVEALN 226


>gi|73953912|ref|XP_868235.1| PREDICTED: similar to Ribonuclease III (RNase III) (Drosha) (p241)
           isoform 4 [Canis familiaris]
          Length = 133

 Score = 60.1 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 20/47 (42%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           K     GP H   +TV V   G     G   S + AE  AA + L++
Sbjct: 44  KTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 90


>gi|84616741|emb|CAJ47419.1| RNA-specific adenosine deaminase [Gallus gallus]
          Length = 853

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            ++  + L E++   +    E+ +  +SGP H+PRF     I+G         SK+ A+Q
Sbjct: 140 EKNPVSGLTEYSQFTYQHC-EFTMLEQSGPSHEPRFKFQAVINGRPFPPAEAGSKKLAKQ 198

Query: 214 VAAAEVLK 221
            AAA  ++
Sbjct: 199 EAAANAMR 206



 Score = 58.9 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   + L E+   K G   E+ +  + GP HDPRF+  V++        +  SK+ A+Q+
Sbjct: 256 KHPISVLMEYGQ-KSGNMIEFLLLSQDGPPHDPRFSYCVKMGDQIFPAVVGNSKKGAKQM 314

Query: 215 AAAEVLK 221
           AA   +K
Sbjct: 315 AAEVAVK 321



 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
              +  + L E+A +      E+K+  ++GP HDP+F    ++ G         SK+  +
Sbjct: 371 LNVNPVSGLLEYARSNGFAA-EFKLIDQTGPPHDPKFVYQAKVGGRWFPAVTAHSKKQGK 429

Query: 213 QVAAAEVLK 221
           Q AA   L+
Sbjct: 430 QEAADAALR 438


>gi|118102165|ref|XP_001232162.1| PREDICTED: similar to RNA-specific adenosine deaminase [Gallus
           gallus]
          Length = 853

 Score = 59.7 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            ++  + L E++   +    E+ +  +SGP H+PRF     I+G         SK+ A+Q
Sbjct: 140 EKNPVSGLTEYSQFTYQHC-EFTMLEQSGPSHEPRFKFQAVINGRPFPPAEAGSKKLAKQ 198

Query: 214 VAAAEVLK 221
            AAA  ++
Sbjct: 199 EAAANAMR 206



 Score = 58.9 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   + L E+   K G   E+ +  + GP HDPRF+  V++        +  SK+ A+Q+
Sbjct: 256 KHPISVLMEYGQ-KSGNMIEFLLLSQDGPPHDPRFSYCVKMGDQIFPAVVGNSKKGAKQM 314

Query: 215 AAAEVLK 221
           AA   +K
Sbjct: 315 AAEVAVK 321



 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
              +  + L E+A +      E+K+  ++GP HDP+F    ++ G         SK+  +
Sbjct: 371 LNVNPVSGLLEYARSNGFAA-EFKLIDQTGPPHDPKFVYQAKVGGRWFPAVTAHSKKQGK 429

Query: 213 QVAAAEVLK 221
           Q AA   L+
Sbjct: 430 QEAADAALR 438


>gi|45383189|ref|NP_989818.1| interferon-induced, double-stranded RNA-activated protein kinase
           [Gallus gallus]
 gi|38194196|dbj|BAD01484.1| double-stranded RNA-activated protein kinase [Gallus gallus]
          Length = 550

 Score = 59.7 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           D  + L +++        +Y    R+G  H P ++    ISG     G   S   A+Q A
Sbjct: 99  DYISLLNKYSQKT-LQLVDYNNINRTGDPHAPMYSCSCVISGHVYGNGKGNSLAVAKQAA 157

Query: 216 AAEVLK 221
           A E  +
Sbjct: 158 AKEAYE 163



 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206
           +         +Y      GP HDP F VVV+I+G+    G+  
Sbjct: 12  YCQKNKYKL-DYVDVDMRGPSHDPEFEVVVKINGVKYGTGVGK 53


>gi|47209094|emb|CAF93170.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 673

 Score = 59.7 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 7/93 (7%)

Query: 132 IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
           I+     + K    +A+ S +        L      +     +Y++  +SGP H P FT+
Sbjct: 323 IKKMKRNLRKVLDSKAIDSNQ----PMNALMRLNQIR--PGLQYRLLSQSGPVHAPVFTM 376

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            V++ G    +    SK+ A+   A +VL+  G
Sbjct: 377 SVDVDGTVY-EASGSSKKTAKLHVAVKVLQAMG 408



 Score = 43.9 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y +   SG  HD RF + VE+ G    +G   +
Sbjct: 465 KNPVMELNEKRRGL--KYDLISESGGSHDKRFVMEVEVDGQK-FRGAGPN 511


>gi|270006021|gb|EFA02469.1| hypothetical protein TcasGA2_TC008157 [Tribolium castaneum]
          Length = 480

 Score = 59.7 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
           K     +   T + E A        E+ V   SG  H   F    ++      +G   SK
Sbjct: 224 KLKDDLKSPITRVHEAAQLNNLAL-EFNVISESGKPHQRNFVTECKLGDYV-TEGEGRSK 281

Query: 209 RAAEQVAAAEVLK 221
           + +++VAA ++L+
Sbjct: 282 KESKRVAAEKMLQ 294



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 2/48 (4%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
           E A     +   Y +    GP H   F V + +      +G   S + 
Sbjct: 24  ELAQFN-EIECSYTLISEEGPPHAKIFKVSLHLGDELY-EGSGSSLKK 69


>gi|115640588|ref|XP_787414.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115965191|ref|XP_001180563.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 878

 Score = 59.7 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 7/72 (9%)

Query: 158 KTE---LQEWAHAKFGVT-PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
           KT    L E   A+F    P+Y++    GP H+  F+V + +           S + A+ 
Sbjct: 105 KTSMCLLNEL--ARFNKLQPKYELVSEKGPPHEKIFSVCLTLGPQKYDS-SGASIKKAQH 161

Query: 214 VAAAEVLKREGI 225
            AAA  L++ G+
Sbjct: 162 GAAASALEKCGL 173



 Score = 51.6 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 3/76 (3%)

Query: 150 SGKFRRDAKT--ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           SG   R+ K+   L   A     +   +KV    G  H   F +   + G    +    S
Sbjct: 439 SGGEERNVKSDISLIYEAANLHNLNVVFKVLDERGQPHLKIFKLQCTV-GEFNTESEGPS 497

Query: 208 KRAAEQVAAAEVLKRE 223
           K+ A++ AA  +L + 
Sbjct: 498 KKDAKRKAAELMLPKL 513


>gi|195121068|ref|XP_002005043.1| GI19273 [Drosophila mojavensis]
 gi|193910111|gb|EDW08978.1| GI19273 [Drosophila mojavensis]
          Length = 1100

 Score = 59.7 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 40/88 (45%), Gaps = 3/88 (3%)

Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVV 193
              +  + K+++        +  T+L +    +    P +++  ++G +   R  F + V
Sbjct: 741 RKRLSAHQKEKSTADQDDAENPITKLIQLQQTRKEKEPIFELIAKNGNESCRRREFVMEV 800

Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             SG   A+G   SK+ A++ +A  +L+
Sbjct: 801 SASGRT-ARGTGNSKKQAKRNSAQALLE 827



 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y++T   GP H   FTV +++             + A+ +AA++ ++
Sbjct: 371 QYRLTGERGPAHCKTFTVTLKLGEEEY-SADGFKIKKAQHLAASKAIE 417



 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +  +T  +KV    GP H   F     + G   ++G    K+ +++ AA ++L
Sbjct: 637 RRNMTVHFKVLREEGPAHMKNFITACIV-GSIVSEGEGNGKKISKKRAAEKML 688


>gi|190346846|gb|EDK39024.2| hypothetical protein PGUG_03122 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 338

 Score = 59.7 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 75/248 (30%), Gaps = 56/248 (22%)

Query: 23  LEKAL---THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           L +AL    H  +++++      L  LG  +L   +S  L   +     G  +   ++ +
Sbjct: 60  LSQALNMRKHGGLANNFG-----LSTLGKTLLSYYVSEYLLVRYPRLPMGVHNAAVDAYM 114

Query: 80  SAETCSQVARELD--------LASFI------------RVS----------------SDL 103
            AET  ++ R           L  ++            R                  S+ 
Sbjct: 115 GAETLGEMGRSWGIEVDNSDRLEKYLAKEPEFMQYGKLRFGDNRTNFTDREDGVTELSEA 174

Query: 104 RKDVCSFMTSI------QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
                    +        A  V S+I  LY   G      F++ +   R +   +  + +
Sbjct: 175 EMARLRNNVNTSDETQAYASAVRSIIGGLYTHCGEGATKQFINDHVLSRKVPLEQMFQFS 234

Query: 158 K--TELQEWAHAKFGVTP-EYKVTFRSGP--DHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           K   EL           P E ++   +G    H   +       G    +G+  S + A+
Sbjct: 235 KPTRELVRLCDKLGFKDPVEIRLIAETGRLSAHA-IYVAGAFTGGEKLGEGIGSSIQEAK 293

Query: 213 QVAAAEVL 220
             A    L
Sbjct: 294 TRAVVNAL 301


>gi|146418856|ref|XP_001485393.1| hypothetical protein PGUG_03122 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 338

 Score = 59.7 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 75/248 (30%), Gaps = 56/248 (22%)

Query: 23  LEKAL---THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           L +AL    H  +++++      L  LG  +L   +S  L   +     G  +   ++ +
Sbjct: 60  LSQALNMRKHGGLANNFG-----LSTLGKTLLSYYVSEYLLVRYPRLPMGVHNAAVDAYM 114

Query: 80  SAETCSQVARELD--------LASFI------------RVS----------------SDL 103
            AET  ++ R           L  ++            R                  S+ 
Sbjct: 115 GAETLGEMGRSWGIEVDNSDRLEKYLAKEPEFMQYGKLRFGDNRTNFTDREDGVTELSEA 174

Query: 104 RKDVCSFMTSI------QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
                    +        A  V S+I  LY   G      F++ +   R +   +  + +
Sbjct: 175 EMARLRNNVNTSDETQAYASAVRSIIGGLYTHCGEGATKQFINDHVLSRKVPLEQMFQFS 234

Query: 158 K--TELQEWAHAKFGVTP-EYKVTFRSGP--DHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           K   EL           P E ++   +G    H   +       G    +G+  S + A+
Sbjct: 235 KPTRELVRLCDKLGFKDPVEIRLIAETGRLSAHA-IYVAGAFTGGEKLGEGIGSSIQEAK 293

Query: 213 QVAAAEVL 220
             A    L
Sbjct: 294 TRAVVNAL 301


>gi|156537077|ref|XP_001602214.1| PREDICTED: similar to tRNA-dihydrouridine synthase [Nasonia
           vitripennis]
          Length = 505

 Score = 59.7 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 46/160 (28%), Gaps = 26/160 (16%)

Query: 78  LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG------ 131
            +  +T  Q+     L  + R      +D             E +   L L  G      
Sbjct: 346 FLDTQTLEQICEVWGLDEYCRTKQKEHRDRGF------GGRFEVVPERLSLIDGNGGAGK 399

Query: 132 --IEVAGTFVD---KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD 186
             ++     +     + +             K+ L +W        P Y          D
Sbjct: 400 RKLDEEEDVLLMRCAFLRNNYADDTSL---PKSRLAKWTRDNRKKLPIYVTHHE-----D 451

Query: 187 PRFTVVVEISGLAPAQG-MDCSKRAAEQVAAAEVLKREGI 225
             F  VV++ G        + SK+ AEQ AA   L   G+
Sbjct: 452 KLFRSVVQVDGRKYGSSFWEKSKKWAEQGAALACLCALGV 491


>gi|118405094|ref|NP_001072537.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Xenopus
           (Silurana) tropicalis]
 gi|112418622|gb|AAI22034.1| double-stranded RNA activated protein kinase 1 [Xenopus (Silurana)
           tropicalis]
 gi|168984501|emb|CAO98764.1| double-stranded RNA activated protein kinase 1 [Xenopus (Silurana)
           tropicalis]
          Length = 552

 Score = 59.7 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +AK +L  +          +     +GP HDPRFT  V ++     +G D  K+ AE +A
Sbjct: 5   NAKGQLITFCIKNGLAY-HFNEVEATGPSHDPRFTSQVFVNQEKLGEGQDKKKKGAENIA 63

Query: 216 AAEVL 220
           A   L
Sbjct: 64  AKMAL 68



 Score = 44.7 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 2/65 (3%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +   +L E       +   +      G  H P F   V I      +    +K+ A++ A
Sbjct: 118 NYVGKLHELCQKHKLICKFFD--ECYGLPHIPEFWCKVVIGEEEFHKVKGNNKKEAKRKA 175

Query: 216 AAEVL 220
           A   L
Sbjct: 176 AYFAL 180


>gi|21668316|emb|CAC84469.1| putative ribonuclease III [Spodoptera frugiperda ascovirus 1a]
          Length = 348

 Score = 59.7 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 54/173 (31%), Gaps = 48/173 (27%)

Query: 16  AFANRSLLEK---ALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA-----K 67
            F +   ++K   ALT  S  +    +YE  E++GD ++   I   +  ++         
Sbjct: 166 TFRDEGNMDKFQAALT--SKEYDNIFNYEYFEYIGDSVINRFIIDYIRENYTDIHNIQQD 223

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRV------SSDLRKDVCSFMT--------- 112
            G ++   +  V     S+    + L  FIR          L+     F           
Sbjct: 224 IGVMTKLRSIYVGKWNLSKCCVSIGLNKFIRCQYAGVDGRKLQVYGHRFKRNNASGVQCQ 283

Query: 113 ----------------------SIQADVVESLIAALYLD-GGIEVAGTFVDKY 142
                                 S+  DV+ES + AL+    G       V ++
Sbjct: 284 PKVCADSVYTDTTSTHIHRDVISLLEDVMESFVGALWCSLMGSPHCTKIVRQF 336


>gi|254571879|ref|XP_002493049.1| Mitochondrial ribosomal protein of the large subunit [Pichia
           pastoris GS115]
 gi|238032847|emb|CAY70870.1| Mitochondrial ribosomal protein of the large subunit [Pichia
           pastoris GS115]
          Length = 208

 Score = 59.7 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 61/147 (41%), Gaps = 13/147 (8%)

Query: 15  YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL--- 71
           Y+  +  LL + LTH S +H  +   E+L  +G ++L L  S  + +   S     L   
Sbjct: 59  YSIPDNELLLQILTHKSFAHGLKPYNEKLSVIGFQLLKLQSSVHVISK-PSDSPYALNGK 117

Query: 72  ------SVRFNSLVSAETCSQVARELDLASFI---RVSSDLRKDVCSFMTSIQADVVESL 122
                 S+   S+ + ++ ++ A+E      +   +    L     S   ++    V +L
Sbjct: 118 NFDCLGSLLTKSIGNHKSLARFAKEKQFDQLVFWKKRDPTLEDPATSGEDTVLGKTVLAL 177

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK 149
           I A+ L  G +VA  F++       ++
Sbjct: 178 IGAINLTHGKKVATEFIETELMPLLVE 204


>gi|158323842|gb|ABW34426.1| RNase3 class I protein [Sweet potato chlorotic stunt virus]
          Length = 228

 Score = 59.7 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/218 (21%), Positives = 78/218 (35%), Gaps = 37/218 (16%)

Query: 29  HS--SISHS--YQESYERLEFLGDRILGLLISTLLFNHFD-SAKEGELSVRFNSLVSAET 83
           H   SI HS       +R E LGD  +   ++ +L + F  +A    LS+     +S   
Sbjct: 21  HRLDSIVHSICTSGDRDRYEILGDWAVASYVTRMLTDLFKHNADAESLSLLRAHNISNVM 80

Query: 84  CSQVARELDL--ASFIRVSSDLRK------DVCSF----MTSIQADVVESLIAALYLDGG 131
            ++V  E  L    ++ ++ D  +                    A+  E ++  L +   
Sbjct: 81  FAKVMVESKLFEDFYLWLTPDQMQLCRKTFAGGRSLYEVNVKFLANYFERIVGWLVVHDC 140

Query: 132 IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT----PEYKVTFRSGPDHDP 187
            E    F+D + K     S   ++ A++ L+EWA            EY V          
Sbjct: 141 SESVEKFLDLFLKPHM--SFHIKKPARSILEEWAMKNNKRLDIHTGEYNVNK-------- 190

Query: 188 RFTVVVEISGLAPAQGMDC-SKRAAEQVA---AAEVLK 221
              V V + G   ++  D  SK+ A   A   A + L 
Sbjct: 191 --VVYVLVDGQEVSRASDLISKKRAISKAVSFAVKALN 226


>gi|149048041|gb|EDM00617.1| adenosine deaminase, RNA-specific, isoform CRA_b [Rattus
           norvegicus]
          Length = 1175

 Score = 59.7 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E+A      T ++ +  +SGP H+PRF   V I+G         SK+ A+Q 
Sbjct: 452 KNPVSGLLEYAQFTS-QTCDFNLIEQSGPSHEPRFKFQVVINGREFPPAEAGSKKVAKQD 510

Query: 215 AAAEVL 220
           AA + +
Sbjct: 511 AAVKAM 516



 Score = 58.5 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   T L E  H K G + E+++  + GP HDP+F   V +           SK+ A+Q+
Sbjct: 563 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPSVSAPSKKVAKQM 621

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 622 AAEEAMKAL 630



 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+  +Q AA   L
Sbjct: 677 LLEYARSHGFAA-EFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAAL 735

Query: 221 K 221
           +
Sbjct: 736 R 736


>gi|226371679|ref|NP_062629.3| double-stranded RNA-specific adenosine deaminase isoform 1 [Mus
           musculus]
 gi|148683238|gb|EDL15185.1| adenosine deaminase, RNA-specific, isoform CRA_a [Mus musculus]
          Length = 1152

 Score = 59.7 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E+A      T ++ +  +SGP H+PRF   V I+G         SK+ A+Q 
Sbjct: 455 KNPVSGLLEYAQFTS-QTCDFNLIEQSGPSHEPRFKFQVVINGREFPPAEAGSKKVAKQD 513

Query: 215 AAAEVL 220
           AA + +
Sbjct: 514 AAVKAM 519



 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   T L E  H K G + E+++  + GP HDP+F   V +           SK+ A+Q+
Sbjct: 566 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQM 624

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 625 AAEEAMKAL 633



 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+  +Q AA   L
Sbjct: 680 LLEYARSHGFAA-EFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAAL 738

Query: 221 K 221
           +
Sbjct: 739 R 739


>gi|226371677|ref|NP_001139768.1| double-stranded RNA-specific adenosine deaminase isoform 3 [Mus
           musculus]
 gi|38372251|sp|Q99MU3|DSRAD_MOUSE RecName: Full=Double-stranded RNA-specific adenosine deaminase;
           Short=DRADA; AltName: Full=RNA adenosine deaminase 1
 gi|148683239|gb|EDL15186.1| adenosine deaminase, RNA-specific, isoform CRA_b [Mus musculus]
          Length = 1178

 Score = 59.7 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E+A      T ++ +  +SGP H+PRF   V I+G         SK+ A+Q 
Sbjct: 455 KNPVSGLLEYAQFTS-QTCDFNLIEQSGPSHEPRFKFQVVINGREFPPAEAGSKKVAKQD 513

Query: 215 AAAEVL 220
           AA + +
Sbjct: 514 AAVKAM 519



 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   T L E  H K G + E+++  + GP HDP+F   V +           SK+ A+Q+
Sbjct: 566 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQM 624

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 625 AAEEAMKAL 633



 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+  +Q AA   L
Sbjct: 680 LLEYARSHGFAA-EFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAAL 738

Query: 221 K 221
           +
Sbjct: 739 R 739


>gi|13272339|gb|AAK17103.1|AF291050_1 RNA adenosine deaminase 1 [Mus musculus]
          Length = 1152

 Score = 59.7 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E+A      T ++ +  +SGP H+PRF   V I+G         SK+ A+Q 
Sbjct: 455 KNPVSGLLEYAQFTS-QTCDFNLIEQSGPSHEPRFKFQVVINGREFPPAEAGSKKVAKQD 513

Query: 215 AAAEVL 220
           AA + +
Sbjct: 514 AAVKAM 519



 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   T L E  H K G + E+++  + GP HDP+F   V +           SK+ A+Q+
Sbjct: 566 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQM 624

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 625 AAEEAMKAL 633



 Score = 51.6 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+   Q AA   L
Sbjct: 680 LLEYARSHGFAA-EFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGXQDAADAAL 738

Query: 221 K 221
           +
Sbjct: 739 R 739


>gi|13236214|gb|AAK16102.1|AF291876_1 RNA adenosine deaminase 1 [Mus musculus]
          Length = 1178

 Score = 59.7 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E+A      T ++ +  +SGP H+PRF   V I+G         SK+ A+Q 
Sbjct: 455 KNPVSGLLEYAQFTS-QTCDFNLIEQSGPSHEPRFKFQVVINGREFPPAEAGSKKVAKQD 513

Query: 215 AAAEVL 220
           AA + +
Sbjct: 514 AAVKAM 519



 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   T L E  H K G + E+++  + GP HDP+F   V +           SK+ A+Q+
Sbjct: 566 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQM 624

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 625 AAEEAMKAL 633



 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+  +Q AA   L
Sbjct: 680 LLEYARSHGFAA-EFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAAL 738

Query: 221 K 221
           +
Sbjct: 739 R 739


>gi|2981097|gb|AAC06233.1| double-stranded RNA-specific adenosine deaminase [Mus musculus]
          Length = 1152

 Score = 59.7 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E+A      T ++ +  +SGP H+PRF   V I+G         SK+ A+Q 
Sbjct: 455 KNPVSGLLEYAQFTS-QTCDFNLIEQSGPSHEPRFKFQVVINGREFPPAEAGSKKVAKQD 513

Query: 215 AAAEVL 220
           AA + +
Sbjct: 514 AAVKAM 519



 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   T L E  H K G + E+++  + GP HDP+F   V +           SK+ A+Q+
Sbjct: 566 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQM 624

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 625 AAEEAMKAL 633



 Score = 52.0 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+   Q AA   L
Sbjct: 680 LLEYARSHGFAA-EFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGRQDAADAAL 738

Query: 221 K 221
           +
Sbjct: 739 R 739


>gi|27768964|gb|AAH42505.1| Adenosine deaminase, RNA-specific [Mus musculus]
          Length = 1152

 Score = 59.7 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E+A      T ++ +  +SGP H+PRF   V I+G         SK+ A+Q 
Sbjct: 455 KNPVSGLLEYAQFTS-QTCDFNLIEQSGPSHEPRFKFQVVINGREFPPAEAGSKKVAKQD 513

Query: 215 AAAEVL 220
           AA + +
Sbjct: 514 AAVKAM 519



 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   T L E  H K G + E+++  + GP HDP+F   V +           SK+ A+Q+
Sbjct: 566 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQM 624

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 625 AAEEAMKAL 633



 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+  +Q AA   L
Sbjct: 680 LLEYARSHGFAA-EFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAAL 738

Query: 221 K 221
           +
Sbjct: 739 R 739


>gi|13591904|ref|NP_112268.1| double-stranded RNA-specific adenosine deaminase [Rattus
           norvegicus]
 gi|1706533|sp|P55266|DSRAD_RAT RecName: Full=Double-stranded RNA-specific adenosine deaminase;
           Short=DRADA
 gi|755817|gb|AAA65039.1| double-stranded RNA-specific adenosine deaminase [Rattus
           norvegicus]
          Length = 1175

 Score = 59.7 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E+A      T ++ +  +SGP H+PRF   V I+G         SK+ A+Q 
Sbjct: 452 KNPVSGLLEYAQFTS-QTCDFNLIEQSGPSHEPRFKFQVVINGREFPPAEAGSKKVAKQD 510

Query: 215 AAAEVL 220
           AA + +
Sbjct: 511 AAVKAM 516



 Score = 58.5 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   T L E  H K G + E+++  + GP HDP+F   V +           SK+ A+Q+
Sbjct: 563 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPSVSAPSKKVAKQM 621

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 622 AAEEAMKAL 630



 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+  +Q AA   L
Sbjct: 677 LLEYARSHGFAA-EFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAAL 735

Query: 221 K 221
           +
Sbjct: 736 R 736


>gi|74140777|dbj|BAC40888.2| unnamed protein product [Mus musculus]
          Length = 1173

 Score = 59.7 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E+A      T ++ +  +SGP H+PRF   V I+G         SK+ A+Q 
Sbjct: 455 KNPVSGLLEYAQFTS-QTCDFNLIEQSGPSHEPRFKFQVVINGREFPPAEAGSKKVAKQD 513

Query: 215 AAAEVL 220
           AA + +
Sbjct: 514 AAVKAM 519



 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   T L E  H K G + E+++  + GP HDP+F   V +           SK+ A+Q+
Sbjct: 566 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQM 624

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 625 AAEEAMKAL 633



 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+  +Q AA   L
Sbjct: 680 LLEYARSHGFAA-EFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAAL 738

Query: 221 K 221
           +
Sbjct: 739 R 739


>gi|71059975|emb|CAJ18531.1| Adar [Mus musculus]
          Length = 1152

 Score = 59.7 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E+A      T ++ +  +SGP H+PRF   V I+G         SK+ A+Q 
Sbjct: 455 KNPVSGLLEYAQFTS-QTCDFNLIEQSGPSHEPRFKFQVVINGREFPPAEAGSKKVAKQD 513

Query: 215 AAAEVL 220
           AA + +
Sbjct: 514 AAVKAM 519



 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   T L E  H K G + E+++  + GP HDP+F   V +           SK+ A+Q+
Sbjct: 566 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQM 624

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 625 AAEEAMKAL 633



 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+  +Q AA   L
Sbjct: 680 LLEYARSHGFAA-EFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAAL 738

Query: 221 K 221
           +
Sbjct: 739 R 739


>gi|226374645|gb|ACO52474.1| RNA transcript variant a adenosine deaminase [Loligo opalescens]
          Length = 786

 Score = 59.3 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     E+++  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 165 PKNALMQL--NEIKPGLEFQLMGQTGPVHAPTFNMKVEVNGEV-FEGAGPTKKKAKLQAA 221

Query: 217 AEVLK 221
            + L+
Sbjct: 222 EKALR 226



 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 14/69 (20%)

Query: 148 LKSGKFRRDAK----TE-----LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
           + +    ++ K    T+     L E           Y++   SGP HD  F + V+I+  
Sbjct: 25  IDNADPNKEPKPTITTKNPVMYLNELL----PEPLVYELVSESGPPHDRNFVMSVKINDD 80

Query: 199 APAQGMDCS 207
              QG   S
Sbjct: 81  NV-QGAGRS 88



 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 6/64 (9%)

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203
           ++  L      ++    L E          +Y+    SG  H   F + V + G+   +G
Sbjct: 289 QKSTLPPQPPGKNPVMILNEL-----RPGLKYEFISESGESHTKTFVMQVTVDGVD-FEG 342

Query: 204 MDCS 207
              +
Sbjct: 343 SGRN 346


>gi|195447262|ref|XP_002071135.1| GK25300 [Drosophila willistoni]
 gi|194167220|gb|EDW82121.1| GK25300 [Drosophila willistoni]
          Length = 720

 Score = 59.3 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            YK+  ++GP H P FT+ V + G     G   SK+ A   AAA  L+
Sbjct: 158 TYKMESQTGPVHAPLFTISVVVDGQKY-MGQGRSKKVARIEAAATALR 204


>gi|226374647|gb|ACO52475.1| RNA transcript variant b adenosine deaminase [Loligo opalescens]
          Length = 687

 Score = 59.3 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     E+++  ++GP H P F + VE++G    +G   +K+ A+  AA
Sbjct: 66  PKNALMQL--NEIKPGLEFQLMGQTGPVHAPTFNMKVEVNGEV-FEGAGPTKKKAKLQAA 122

Query: 217 AEVLK 221
            + L+
Sbjct: 123 EKALR 127



 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 6/64 (9%)

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203
           ++  L      ++    L E          +Y+    SG  H   F + V + G+   +G
Sbjct: 190 QKSTLPPQPPGKNPVMILNEL-----RPGLKYEFISESGESHTKTFVMQVTVDGVD-FEG 243

Query: 204 MDCS 207
              +
Sbjct: 244 SGRN 247


>gi|226371684|ref|NP_001033676.2| double-stranded RNA-specific adenosine deaminase isoform 2 [Mus
           musculus]
          Length = 930

 Score = 59.3 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E+A      T ++ +  +SGP H+PRF   V I+G         SK+ A+Q 
Sbjct: 207 KNPVSGLLEYAQFTS-QTCDFNLIEQSGPSHEPRFKFQVVINGREFPPAEAGSKKVAKQD 265

Query: 215 AAAEVL 220
           AA + +
Sbjct: 266 AAVKAM 271



 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   T L E  H K G + E+++  + GP HDP+F   V +           SK+ A+Q+
Sbjct: 318 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQM 376

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 377 AAEEAMKAL 385



 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+  +Q AA   L
Sbjct: 432 LLEYARSHGFAA-EFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAAL 490

Query: 221 K 221
           +
Sbjct: 491 R 491


>gi|74188545|dbj|BAE28026.1| unnamed protein product [Mus musculus]
          Length = 930

 Score = 59.3 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E+A      T ++ +  +SGP H+PRF   V I+G         SK+ A+Q 
Sbjct: 207 KNPVSGLLEYAQFTS-QTCDFNLIEQSGPSHEPRFKFQVVINGREFPPAEAGSKKVAKQD 265

Query: 215 AAAEVL 220
           AA + +
Sbjct: 266 AAVKAM 271



 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   T L E  H K G + E+++  + GP HDP+F   V +           SK+ A+Q+
Sbjct: 318 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQM 376

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 377 AAEEAMKAL 385



 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+  +Q AA   L
Sbjct: 432 LLEYARSHGFAA-EFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAAL 490

Query: 221 K 221
           +
Sbjct: 491 R 491


>gi|328710263|ref|XP_003244208.1| PREDICTED: hypothetical protein LOC100575225 [Acyrthosiphon pisum]
          Length = 407

 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            K   T  Y +   +G  H P FT + +   +  A G   SK+ A+Q AAA++ ++ 
Sbjct: 5   EKKPFTVSYVLVAITGHAHKPIFTYMCQTHNMK-ALGEGKSKKEAKQNAAAQMCEKL 60



 Score = 35.4 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 3/85 (3%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY--KVTFRSGPDHDPRFTVVVEISG 197
            + +K  A++      +    LQE         P Y  ++  +   +    + V  E+  
Sbjct: 114 LQQFKYEAVQIAHCDMNPIGALQELCTTYKWTPPFYSFEILKKDLSEFKVLYKVTCEVFH 173

Query: 198 LAPAQGMDCSKRAAEQVAAAEVLKR 222
           L    G D  K+ A++ AA  + ++
Sbjct: 174 L-HTMGTDSFKKGAKRKAARLMYEK 197


>gi|328708088|ref|XP_001949570.2| PREDICTED: 39S ribosomal protein L44, mitochondrial-like
           [Acyrthosiphon pisum]
          Length = 348

 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 47/241 (19%), Positives = 82/241 (34%), Gaps = 35/241 (14%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQE---------------SYERLEFLGDRILG 52
              KR+G  F N +LL++ALT  S     +E                 + L   G   + 
Sbjct: 64  AFSKRLGEEFNN-NLLQQALTERSYIIREEERQKNVGIEQPTLNLSDNKELVSKGSDFID 122

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-DLRKDVCSFM 111
            ++   L        E  +      L S ET S V+  +  +  I  +   + K      
Sbjct: 123 DIVKRYLRTVLPRLPEEGIIGIHKYLTSIETLSHVSFHIGTSELILCAEFPVEKPT---- 178

Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR----RDAKTELQEWAHA 167
               ++V++S+IAAL    G   A  FV  +   +       +     +    L E    
Sbjct: 179 ---LSNVLKSIIAALIESSGDSRAALFVRDFIITQIADKDLHQFWEPEEPIKLLSEILAR 235

Query: 168 KFGVTPEYKVTFRSGPDHDPR---FTVVVEISGLA--PAQGMDCSKRAAEQVAAAEVLKR 222
               +PE ++   SG   +     F V +           G   +   A ++AA + L++
Sbjct: 236 DGIQSPEPRLIGCSGK--NTILACFRVGLYTPDNKRMIGLGFGETVDIAHEMAARDSLRQ 293

Query: 223 E 223
            
Sbjct: 294 L 294


>gi|301768411|ref|XP_002919630.1| PREDICTED: protein SON-like [Ailuropoda melanoleuca]
          Length = 2336

 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213
            +   + L E  + +    PE+ +   SGPDH   F   V I+G A        +K+ A+ 
Sbjct: 2247 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2306

Query: 214  VAAAEVLKREGI 225
             AA  VL+  G+
Sbjct: 2307 TAATVVLQAMGL 2318


>gi|297287594|ref|XP_001093086.2| PREDICTED: protein SON-like [Macaca mulatta]
          Length = 2140

 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213
            +   + L E  + +    PE+ +   SGPDH   F   V I+G A        +K+ A+ 
Sbjct: 2051 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2110

Query: 214  VAAAEVLKREGI 225
             AA  VL+  G+
Sbjct: 2111 TAATVVLQAMGL 2122


>gi|296491682|gb|DAA33715.1| SON DNA-binding protein [Bos taurus]
          Length = 2136

 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213
            +   + L E  + +    PE+ +   SGPDH   F   V I+G A        +K+ A+ 
Sbjct: 2047 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2106

Query: 214  VAAAEVLKREGI 225
             AA  VL+  G+
Sbjct: 2107 TAATVVLQAMGL 2118


>gi|296232103|ref|XP_002807816.1| PREDICTED: LOW QUALITY PROTEIN: protein SON-like [Callithrix jacchus]
          Length = 2360

 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213
            +   + L E  + +    PE+ +   SGPDH   F   V I+G A        +K+ A+ 
Sbjct: 2271 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2330

Query: 214  VAAAEVLKREGI 225
             AA  VL+  G+
Sbjct: 2331 TAATVVLQAMGL 2342


>gi|167427274|gb|ABZ80253.1| SON DNA-binding protein isoform F (predicted) [Callithrix jacchus]
          Length = 2454

 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213
            +   + L E  + +    PE+ +   SGPDH   F   V I+G A        +K+ A+ 
Sbjct: 2365 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2424

Query: 214  VAAAEVLKREGI 225
             AA  VL+  G+
Sbjct: 2425 TAATVVLQAMGL 2436


>gi|149711170|ref|XP_001495912.1| PREDICTED: similar to mitochondrial ribosomal protein L44 [Equus
           caballus]
          Length = 332

 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 62/191 (32%), Gaps = 11/191 (5%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
           E    L   G       ++  L   F       L      L   E    VAR L +   +
Sbjct: 120 EDNRELSEQGSSFSQTCLTQFLEEAFPDLPTEGLQSLVGFLTGEEVVCHVARNLAVEQ-L 178

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-- 155
            +S++          ++      +++ AL    G   A  F+  +   +      F    
Sbjct: 179 TLSAEFPVP-----PTVLQRTFFAVVGALLQSSGAGRAALFIRDFLITQMTGKELFEIWK 233

Query: 156 --DAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAE 212
             +    L E    +    PE ++T +SG     P + V +       A+G   +   AE
Sbjct: 234 IINPMGLLVEELKKRNIPAPESRLTRQSGSTTALPLYFVGLYCDKKLIAEGPGETVLVAE 293

Query: 213 QVAAAEVLKRE 223
           + AA   L++ 
Sbjct: 294 EEAARVALRKL 304


>gi|119630222|gb|EAX09817.1| SON DNA binding protein, isoform CRA_d [Homo sapiens]
          Length = 2482

 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213
            +   + L E  + +    PE+ +   SGPDH   F   V I+G A        +K+ A+ 
Sbjct: 2393 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2452

Query: 214  VAAAEVLKREGI 225
             AA  VL+  G+
Sbjct: 2453 TAATVVLQAMGL 2464


>gi|119630227|gb|EAX09822.1| SON DNA binding protein, isoform CRA_h [Homo sapiens]
          Length = 2459

 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213
            +   + L E  + +    PE+ +   SGPDH   F   V I+G A        +K+ A+ 
Sbjct: 2370 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2429

Query: 214  VAAAEVLKREGI 225
             AA  VL+  G+
Sbjct: 2430 TAATVVLQAMGL 2441


>gi|114683930|ref|XP_531438.2| PREDICTED: SON DNA-binding protein isoform 10 [Pan troglodytes]
          Length = 2459

 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213
            +   + L E  + +    PE+ +   SGPDH   F   V I+G A        +K+ A+ 
Sbjct: 2370 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2429

Query: 214  VAAAEVLKREGI 225
             AA  VL+  G+
Sbjct: 2430 TAATVVLQAMGL 2441


>gi|114683936|ref|XP_001165875.1| PREDICTED: similar to SON DNA binding protein isoform A isoform 7
            [Pan troglodytes]
          Length = 2140

 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213
            +   + L E  + +    PE+ +   SGPDH   F   V I+G A        +K+ A+ 
Sbjct: 2051 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2110

Query: 214  VAAAEVLKREGI 225
             AA  VL+  G+
Sbjct: 2111 TAATVVLQAMGL 2122


>gi|74001159|ref|XP_857396.1| PREDICTED: similar to SON DNA-binding protein isoform A isoform 19
            [Canis familiaris]
          Length = 2145

 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213
            +   + L E  + +    PE+ +   SGPDH   F   V I+G A        +K+ A+ 
Sbjct: 2056 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2115

Query: 214  VAAAEVLKREGI 225
             AA  VL+  G+
Sbjct: 2116 TAATVVLQAMGL 2127


>gi|74001165|ref|XP_535583.2| PREDICTED: similar to SON protein (SON3) (Negative regulatory
            element-binding protein) (NRE-binding protein) (DBP-5)
            (Bax antagonist selected in saccharomyces 1) (BASS1)
            isoform 2 [Canis familiaris]
          Length = 2464

 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213
            +   + L E  + +    PE+ +   SGPDH   F   V I+G A        +K+ A+ 
Sbjct: 2375 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2434

Query: 214  VAAAEVLKREGI 225
             AA  VL+  G+
Sbjct: 2435 TAATVVLQAMGL 2446


>gi|74001153|ref|XP_857275.1| PREDICTED: similar to SON DNA-binding protein isoform G isoform 16
            [Canis familiaris]
          Length = 1442

 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213
            +   + L E  + +    PE+ +   SGPDH   F   V I+G A        +K+ A+ 
Sbjct: 1353 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 1412

Query: 214  VAAAEVLKREGI 225
             AA  VL+  G+
Sbjct: 1413 TAATVVLQAMGL 1424


>gi|139948494|ref|NP_001077163.1| SON DNA-binding protein [Bos taurus]
 gi|61966462|emb|CAG47115.1| SON DNA-binding protein [Bos taurus]
          Length = 2136

 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213
            +   + L E  + +    PE+ +   SGPDH   F   V I+G A        +K+ A+ 
Sbjct: 2047 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2106

Query: 214  VAAAEVLKREGI 225
             AA  VL+  G+
Sbjct: 2107 TAATVVLQAMGL 2118


>gi|17046373|gb|AAL34497.1|AF380179_1 SON DNA binding protein isoform A [Homo sapiens]
          Length = 2140

 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213
            +   + L E  + +    PE+ +   SGPDH   F   V I+G A        +K+ A+ 
Sbjct: 2051 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 2110

Query: 214  VAAAEVLKREGI 225
             AA  VL+  G+
Sbjct: 2111 TAATVVLQAMGL 2122


>gi|47223534|emb|CAF98021.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 687

 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             + P+YK+    GP H   FTV + +      +    S + A+   AA  L+
Sbjct: 20  NRIQPQYKLLSERGPAHAKIFTVQLALGEQVW-EAEGTSIKKAQHSTAARALE 71



 Score = 52.4 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV--- 219
           E A  +      ++V   SGP H   F   V + G   A+G   SK+ +++ AA  +   
Sbjct: 276 EIALKRNLC-VNFEVLKESGPPHMKSFLTRVTV-GEFSAEGEGNSKKLSKKRAAISILQD 333

Query: 220 LKREGI 225
           LK+  I
Sbjct: 334 LKKLPI 339



 Score = 35.1 bits (80), Expect = 8.7,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 46/132 (34%), Gaps = 11/132 (8%)

Query: 70  ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLD 129
           E++++ N  V+ E   +       +   RV+           +   +    ++  ++  D
Sbjct: 276 EIALKRNLCVNFEVLKESGPPHMKSFLTRVTVGEFSAEGEGNSKKLSKKRAAI--SILQD 333

Query: 130 GGIEVAGTFVDK---YWKQR---ALKSGKF---RRDAKTELQEWAHAKFGVTPEYKVTFR 180
                    V+K   ++K+R    LK+G       +  + L +   AK    PEY +   
Sbjct: 334 LKKLPIIPAVEKPKLHYKKRTKTILKTGPDYGQGMNPISRLAQIQQAKKEKEPEYVLLSE 393

Query: 181 SGPDHDPRFTVV 192
            G      F + 
Sbjct: 394 RGMPRRREFIMQ 405


>gi|36546|emb|CAA45282.1| son-a [Homo sapiens]
          Length = 1523

 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213
            +   + L E  + +    PE+ +   SGPDH   F   V I+G A        +K+ A+ 
Sbjct: 1363 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 1422

Query: 214  VAAAEVLKREGI 225
             AA  VL+  G+
Sbjct: 1423 TAATVVLQAMGL 1434


>gi|328352939|emb|CCA39337.1| Ribonuclease 3 [Pichia pastoris CBS 7435]
          Length = 196

 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 61/147 (41%), Gaps = 13/147 (8%)

Query: 15  YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL--- 71
           Y+  +  LL + LTH S +H  +   E+L  +G ++L L  S  + +   S     L   
Sbjct: 47  YSIPDNELLLQILTHKSFAHGLKPYNEKLSVIGFQLLKLQSSVHVISK-PSDSPYALNGK 105

Query: 72  ------SVRFNSLVSAETCSQVARELDLASFI---RVSSDLRKDVCSFMTSIQADVVESL 122
                 S+   S+ + ++ ++ A+E      +   +    L     S   ++    V +L
Sbjct: 106 NFDCLGSLLTKSIGNHKSLARFAKEKQFDQLVFWKKRDPTLEDPATSGEDTVLGKTVLAL 165

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALK 149
           I A+ L  G +VA  F++       ++
Sbjct: 166 IGAINLTHGKKVATEFIETELMPLLVE 192


>gi|224047671|ref|XP_002191239.1| PREDICTED: eukaryotic translation initiation factor 2-alpha kinase
           2 [Taeniopygia guttata]
          Length = 561

 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             R+  T++  +   +      Y+    +GP H P FTVVV+I+G     G   S
Sbjct: 1   MDREYMTKINHYCQTRKLKL-VYETVDMTGPSHYPEFTVVVKINGQKYGTGTGKS 54



 Score = 42.8 bits (100), Expect = 0.040,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           +    L  ++        +Y    R+G DH P +TV   ISG    +G   +
Sbjct: 99  NYVGRLNNFSQRTGL-LVDYPNRNRTGGDHAPTYTVSCTISGYVYGRGAGPT 149


>gi|321468042|gb|EFX79029.1| hypothetical protein DAPPUDRAFT_319983 [Daphnia pulex]
          Length = 130

 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 5/79 (6%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESY-ERLEFLGDRILGLLIS-TLLFNHFDSA 66
            E+ + Y F ++ +L +ALT     +S +    +RLE +GD  L  L +           
Sbjct: 55  FEEVLSYTFNDKEVLLEALT---YGNSIRSLNDQRLEVIGDAALEFLAALQFFKQSSLYH 111

Query: 67  KEGELSVRFNSLVSAETCS 85
             G++S   ++ V  +  S
Sbjct: 112 SAGDISQLRSACVCDDIFS 130


>gi|239790094|dbj|BAH71631.1| ACYPI001280 [Acyrthosiphon pisum]
          Length = 348

 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 47/241 (19%), Positives = 81/241 (33%), Gaps = 35/241 (14%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQE---------------SYERLEFLGDRILG 52
              KR+G  F N  LL++ALT  S     +E                 + L   G   + 
Sbjct: 64  AFSKRLGEEFNN-DLLQQALTERSYIIREEERQKNVGIEQPTLNLSDNKELVSKGSDFID 122

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS-DLRKDVCSFM 111
            ++   L        E  +      L S ET S V+  +  +  I  +   + K      
Sbjct: 123 DIVKRYLRTVLPRLPEEGIIGIHKYLTSIETLSHVSFHIGTSELILCAEFPVEKPT---- 178

Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR----RDAKTELQEWAHA 167
               ++V++S+IAAL    G   A  FV  +   +       +     +    L E    
Sbjct: 179 ---LSNVLKSIIAALIESSGDSRAALFVRDFIITQIADKDLHQFWEPEEPIKLLSEILAR 235

Query: 168 KFGVTPEYKVTFRSGPDHDPR---FTVVVEISGLA--PAQGMDCSKRAAEQVAAAEVLKR 222
               +PE ++   SG   +     F V +           G   +   A ++AA + L++
Sbjct: 236 DGIQSPEPRLIGCSGK--NTILACFRVGLYTPDNKRMIGLGFGETVDIAHEMAARDSLRQ 293

Query: 223 E 223
            
Sbjct: 294 L 294


>gi|170031452|ref|XP_001843599.1| ribonuclease 3 [Culex quinquefasciatus]
 gi|167870165|gb|EDS33548.1| ribonuclease 3 [Culex quinquefasciatus]
          Length = 835

 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 39/121 (32%), Gaps = 55/121 (45%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQES-------------------------- 39
              LEK I Y F NR  L+ ALTH S   ++  +                          
Sbjct: 710 LDALEKYIDYTFTNRYTLQLALTHPSYKENFGTNPDHARNSLTNCGIRQPEYGDRKIHFM 769

Query: 40  --------------------YE---------RLEFLGDRILGLLISTLLFNHFDSAKEGE 70
                               YE         RLEFLGD ++  + S  LF+ F   +EG 
Sbjct: 770 NTRKRGINTLISIMSRFGKEYETDSNITHNERLEFLGDAVVEFITSIHLFHMFPDLEEGR 829

Query: 71  L 71
           +
Sbjct: 830 M 830


>gi|291448524|ref|ZP_06587914.1| predicted protein [Streptomyces roseosporus NRRL 15998]
 gi|291351471|gb|EFE78375.1| predicted protein [Streptomyces roseosporus NRRL 15998]
          Length = 775

 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 78/223 (34%), Gaps = 40/223 (17%)

Query: 23  LEKALTHSSISHS--------YQESYERLEFLGDRILGLLISTLLFNH------FDSAKE 68
           L +ALTHSS  H         +Q   + L   G  +L  L                   E
Sbjct: 467 LTQALTHSSYVHENRTDVAAHHQRDNQLLAHHGSLVLNHLAKHARVGRILAHGLVPDEDE 526

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
             +     +  + +T +++   L LA  +R          S   S  AD  +S+ A  + 
Sbjct: 527 ARMH----TPANEDT-ARLGTALALADGMRTGRGED----SQRRSTVADAAQSVAATAWR 577

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
             G  +             L   +++ +  T L       FG+T  Y+   R+G DH   
Sbjct: 578 LHGTRLLRR--RPAVLDGWLSELQYQHEPVTALN-LLTTMFGMTHHYE-YERTGLDHLQT 633

Query: 189 FTVVVEISGLAPAQG---------MD-CSKRAAEQVAAAEVLK 221
           FT  + +S    A+G             SK  A++  A +VL+
Sbjct: 634 FTSTLVLSD---ARGRVHRWAVPPEGPSSKSDADKTTAQDVLE 673



 Score = 55.5 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 55/167 (32%), Gaps = 13/167 (7%)

Query: 46  LGDRILGLLIST-LLFNHFDSAKEGELSVR-FNSLVSAETCSQVARELDLASFIRVSSDL 103
           LG   + +++    +          + S     S  +     Q A E  L   +++ +  
Sbjct: 244 LGRSTIDVILIDAWIAQRQPEKVGTQASEHNRRSTEARRLLGQWATERGL---VQMGAGE 300

Query: 104 RKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQ 162
            +       S+   V   +   L L G  E+A   VD         + +    D  TE Q
Sbjct: 301 AQ---RPAPSVAEGVARQIFGLLSLTGAHEIARRLVDVICVGLDHGTDQIGGADPLTEAQ 357

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
                       Y+     GPDHD R+  +    G   A+G   +K+
Sbjct: 358 TLFAKDGL---SYE-YAEEGPDHDKRYIAIARTGGGRSARGEGRNKK 400


>gi|240277193|gb|EER40702.1| 60S ribosomal protein L3 [Ajellomyces capsulatus H143]
 gi|325094013|gb|EGC47323.1| 60S ribosomal protein [Ajellomyces capsulatus H88]
          Length = 394

 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 71/242 (29%), Gaps = 57/242 (23%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           L + L   S   S Q + + L  LG  +L    +  L + +       L     S + A+
Sbjct: 103 LARTLVDESADPSPQFNNKSLSILGSDLLTYYTAEHLISTYPRLPVKVLWAAMYSYIGAK 162

Query: 83  TCSQVARELDL-------------------------------ASFIRVSSDLRKD----- 106
             + + RE  L                                +F+R   ++ K      
Sbjct: 163 PLAAMTREWGLEYAAEPGPEVDPGLLQFKRLPPDTGFETKSNGTFLRRDENMAKRSTSAR 222

Query: 107 ---VCSFMTSIQADVVE---------------SLIAALYLDGGIEVAGTFVDKYWKQRAL 148
                +F  S     V                +++ A+YL  G   A  F  +++  R L
Sbjct: 223 IIYGGAFGESTLPYPVHHEGVTPNRACANFIRAVVGAVYLHAGRPAAKQFFKEHFMSRHL 282

Query: 149 KSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMD 205
                   R    +L +    +    P  K+   +G   + P F V +        +G  
Sbjct: 283 DMASLFSFRQPTRDLSKLCRREGFEDPVAKILSETGRHSNRPVFNVGIFSGPDKLGEGAG 342

Query: 206 CS 207
            S
Sbjct: 343 GS 344


>gi|225558238|gb|EEH06522.1| 60S ribosomal protein L3 [Ajellomyces capsulatus G186AR]
          Length = 394

 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 71/242 (29%), Gaps = 57/242 (23%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           L + L   S   S Q + + L  LG  +L    +  L + +       L     S + A+
Sbjct: 103 LARTLVDESADPSPQFNNKSLSILGSDLLTYYTAEHLISTYPRLPVKVLWAAMYSYIGAK 162

Query: 83  TCSQVARELDL-------------------------------ASFIRVSSDLRKD----- 106
             + + RE  L                                +F+R   ++ K      
Sbjct: 163 PLAAMTREWGLEYAAEPGPEVDPGLLQFKRLPPDTGFETKSNGTFLRRDENMAKRSTSAR 222

Query: 107 ---VCSFMTSIQADVVE---------------SLIAALYLDGGIEVAGTFVDKYWKQRAL 148
                +F  S     V                +++ A+YL  G   A  F  +++  R L
Sbjct: 223 IIYGGAFGESTLPYPVHHEGVTPNRACANFIRAVVGAVYLHAGRPAAKQFFKEHFMSRHL 282

Query: 149 KSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMD 205
                   R    +L +    +    P  K+   +G   + P F V +        +G  
Sbjct: 283 DMASLFSFRQPTRDLSKLCRREGFEDPVAKILSETGRHSNRPVFNVGIFSGPDKLGEGAG 342

Query: 206 CS 207
            S
Sbjct: 343 GS 344


>gi|224143644|ref|XP_002336064.1| predicted protein [Populus trichocarpa]
 gi|222869865|gb|EEF06996.1| predicted protein [Populus trichocarpa]
          Length = 61

 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            A  +    P Y  T +SG  H P F   VEI G+        +K+ AE  AA   
Sbjct: 1   MAQREGCGLPTY-FTEKSGEAHAPTFISTVEIDGVIFTGKEARTKKQAEMSAAKTA 55


>gi|154285866|ref|XP_001543728.1| hypothetical protein HCAG_00774 [Ajellomyces capsulatus NAm1]
 gi|150407369|gb|EDN02910.1| hypothetical protein HCAG_00774 [Ajellomyces capsulatus NAm1]
          Length = 370

 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 71/242 (29%), Gaps = 57/242 (23%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           L + L   S   S Q + + L  LG  +L    +  L + +       L     S + A+
Sbjct: 79  LARTLVDESADPSPQFNNKSLSILGSDLLTYYTAEHLISTYPRLPVKVLWAAMYSYIGAK 138

Query: 83  TCSQVARELDL-------------------------------ASFIRVSSDLRKD----- 106
             + + RE  L                                +F+R   ++ K      
Sbjct: 139 PLAAMTREWGLEYAAEPGPEVDPGLLQFKRLPPDTGFETKSNGTFLRRDENMAKRSTSAR 198

Query: 107 ---VCSFMTSIQADVVE---------------SLIAALYLDGGIEVAGTFVDKYWKQRAL 148
                +F  S     V                +++ A+YL  G   A  F  +++  R L
Sbjct: 199 IIYGGAFGESTLPYPVHHEGVTPNRACANFIRAVVGAVYLHAGRPAAKQFFKEHFMSRHL 258

Query: 149 KSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMD 205
                   R    +L +    +    P  K+   +G   + P F V +        +G  
Sbjct: 259 DMASLFSFRQPTRDLSKLCRREGFEDPVAKILSETGRHSNRPVFNVGIFSGPDKLGEGAG 318

Query: 206 CS 207
            S
Sbjct: 319 GS 320


>gi|328857530|gb|EGG06646.1| hypothetical protein MELLADRAFT_63275 [Melampsora larici-populina
           98AG31]
          Length = 400

 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 7/131 (5%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
            A   + LE  + Y F N++LL+K L         + ++ +LE++GD +LGL  +  L  
Sbjct: 239 KASDLNALETSLKYRFHNKTLLQKVL----WPDPAERTFRKLEWIGDCLLGLWSAERLAE 294

Query: 62  HFDSAKEGE-LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                ++ + L + F  L    T +  A    L    ++           +    A++VE
Sbjct: 295 MGTETQKKKGLGLAFIELNCNTTLAAWADRW-LHPHKQLVKPKIGT-GDKVCKASANMVE 352

Query: 121 SLIAALYLDGG 131
            L+  L++D G
Sbjct: 353 CLVFVLFIDCG 363


>gi|302881925|ref|XP_003039873.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256720740|gb|EEU34160.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 383

 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/259 (15%), Positives = 68/259 (26%), Gaps = 60/259 (23%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           L +AL   S   +   +   L FLG   +   +   L   +       L     +    E
Sbjct: 89  LARALVVPSADKNPSFNNSNLAFLGSTFINYHVLEYLVCKWPRLPMSLLYEALRAYAGKE 148

Query: 83  TCSQVARELDLAS---------------------------FIRVSSDLR----------- 104
           +  Q+AR   + +                           ++R +SD+            
Sbjct: 149 SLHQIARRWGVEAAAAPGEEVDPGLLQWKPEASGLQTRWGYVRANSDITDRYVERRGISS 208

Query: 105 ---------------KDVCSFMTSIQADVVESLIAAL----YLDGGIEVAGTFVDKYWKQ 145
                          K         Q +   S + A+    Y   G +    FV  +   
Sbjct: 209 RVVLDDEFGDMVAMPKTGEEGYKYYQHEAYASFVQAVVGAIYTHCGRDATRDFVKSHILS 268

Query: 146 RALKSGKFRRD--AKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQ 202
           R +      +      EL      +    P  ++   +G     P F V V        +
Sbjct: 269 RDVDVSSMFQFQLPTRELAMLCAREGFEAPIARLESETGRLSRTPVFVVGVYSGPEKLGE 328

Query: 203 GMDCSKRAAEQVAAAEVLK 221
           G   S   A   A+   LK
Sbjct: 329 GSGPSLDIARWNASMNALK 347


>gi|326913278|ref|XP_003202966.1| PREDICTED: hypothetical protein LOC100542052 [Meleagris gallopavo]
          Length = 847

 Score = 59.3 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 53/162 (32%), Gaps = 21/162 (12%)

Query: 44  EFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL 103
           +F G     +L S  L N    A   +      + V+    +Q+ R++      R    L
Sbjct: 658 QFTGSTGAQILSSDELTNSGPQAWIRKDQFLRAAPVTGGMGAQLMRKMGW----REGEGL 713

Query: 104 RKDVCSFMTSIQADVVESLIAALYLD-----GGIEVAGTFVDKYWKQRALKSGKFRRDAK 158
            K+             E  +  + +D      G+   G    K      +      +   
Sbjct: 714 GKNK------------EGSVEPIMVDFKTDRKGLVAVGEKAQKRSGHYVVMKDLSGKHPV 761

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
           + L E  + +    PE+ +   SGPDH   F   V ++G   
Sbjct: 762 SALMEICNKRRWSPPEFVLVDDSGPDHRKHFIFKVRVNGNEY 803


>gi|145543444|ref|XP_001457408.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124425224|emb|CAK90011.1| unnamed protein product [Paramecium tetraurelia]
          Length = 327

 Score = 58.9 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 63/154 (40%), Gaps = 28/154 (18%)

Query: 16  AFANRSLLEKALTHS------------SISHSYQES-----YERLEF-LGDRILGLLIST 57
            F N++LL +ALT+             +  +   E       + LEF   D +L    S+
Sbjct: 7   QFKNKNLLIRALTNKIHELEYNQKSNQTYVYGNNEDLTVAGQQFLEFYFYDYMLLQGYSS 66

Query: 58  LLFNHFDS-----AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
            L   F +      K  ++      L++ +  +++  +L+L +F++V + ++        
Sbjct: 67  FLAFRFPNQLSYFKKPNDIIQLRQRLINDQYLAEIGLQLNLQNFLKVGNQIQL---KTNQ 123

Query: 113 SIQADVVESLIAALYLD--GGIEVAGTFVDKYWK 144
            + AD +++LI A Y D    +E     +    +
Sbjct: 124 KVLADTIKALIIAQYYDKYQDLESLRDLLYPVME 157


>gi|158323830|gb|ABW34418.1| RNase3 class I protein [Sweet potato chlorotic stunt virus]
          Length = 228

 Score = 58.9 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 46/218 (21%), Positives = 78/218 (35%), Gaps = 37/218 (16%)

Query: 29  HS--SISHS--YQESYERLEFLGDRILGLLISTLLFNHFD-SAKEGELSVRFNSLVSAET 83
           H   SI HS       +R E LGD  +   ++ +L + F  +A    LS+     +S   
Sbjct: 21  HRLDSIVHSVCTSGDRDRYEILGDWAVASYVTRMLTDLFKHNADAESLSLLRAHNISNVM 80

Query: 84  CSQVARELDL--ASFIRVSSDLRK------DVCSF----MTSIQADVVESLIAALYLDGG 131
            ++V  E  +    ++ ++ D  +                    A+  E ++  L +   
Sbjct: 81  FAKVMVESKIFEDFYLWLTPDQMQLCRKTFAGGRGLYEVNVKFLANYFERIVGWLVVHDC 140

Query: 132 IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT----PEYKVTFRSGPDHDP 187
            E    F+D + K     S   ++ A++ L+EWA            EY V          
Sbjct: 141 SESVEKFLDLFLKPHM--SFHIKKPARSILEEWAMKNNKRLDIHTGEYNVNK-------- 190

Query: 188 RFTVVVEISGLAPAQGMDC-SKRAAEQVA---AAEVLK 221
              V V + G   ++  D  SK+ A   A   A E L 
Sbjct: 191 --VVYVLVDGQKVSRASDLISKKRAISKAVSIAVEALN 226


>gi|145545985|ref|XP_001458676.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124426497|emb|CAK91279.1| unnamed protein product [Paramecium tetraurelia]
          Length = 313

 Score = 58.9 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 82/237 (34%), Gaps = 32/237 (13%)

Query: 16  AFANRSLLEKALT---H------SSISHSYQESYERLEFLGDRILGLLISTL-LFNHFDS 65
            F N  LL +A T   H       +       + E     G ++L        L   F +
Sbjct: 7   EFRNTKLLVQAFTNKIHEIEYFQKTGQQYQYGNNEDFSIAGQQLLEFYFYDYMLLQGFPN 66

Query: 66  -----AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
                 K  ++      L++ +  S++A  L + + + + +   +        + +D V+
Sbjct: 67  QQSQFKKPSDIIQLRQRLINDKYLSEIAILLSIQNLLNIGN---QKSLKNNPKVLSDCVK 123

Query: 121 SLIAALYLD--GGIEVAGTFVDKYWKQRALKSGKFRR-----DAKTELQEWAHAKFGVT- 172
           S+I A Y D    +E     +     Q   K  +  R     + K+   E+ ++  G   
Sbjct: 124 SIIGAHYYDKQNDLEALRDIIHPIVVQLLNKGEQITRTQWKYNPKSSFLEYLNSYKGELN 183

Query: 173 ------PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                  E+K        +   + + +E++     Q +  +KR  EQ    E L + 
Sbjct: 184 INPKLTIEWKKDDSILNQNKSLYLISLELNSTMKVQKVGINKRETEQSVYLEALLQL 240


>gi|239945065|ref|ZP_04697002.1| hypothetical protein SrosN15_29015 [Streptomyces roseosporus NRRL
           15998]
 gi|239991527|ref|ZP_04712191.1| hypothetical protein SrosN1_29757 [Streptomyces roseosporus NRRL
           11379]
          Length = 591

 Score = 58.9 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 78/223 (34%), Gaps = 40/223 (17%)

Query: 23  LEKALTHSSISHS--------YQESYERLEFLGDRILGLLISTLLFNH------FDSAKE 68
           L +ALTHSS  H         +Q   + L   G  +L  L                   E
Sbjct: 283 LTQALTHSSYVHENRTDVAAHHQRDNQLLAHHGSLVLNHLAKHARVGRILAHGLVPDEDE 342

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
             +     +  + +T +++   L LA  +R          S   S  AD  +S+ A  + 
Sbjct: 343 ARMH----TPANEDT-ARLGTALALADGMRTGRGED----SQRRSTVADAAQSVAATAWR 393

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
             G  +             L   +++ +  T L       FG+T  Y+   R+G DH   
Sbjct: 394 LHGTRLLRR--RPAVLDGWLSELQYQHEPVTALN-LLTTMFGMTHHYE-YERTGLDHLQT 449

Query: 189 FTVVVEISGLAPAQG---------MD-CSKRAAEQVAAAEVLK 221
           FT  + +S    A+G             SK  A++  A +VL+
Sbjct: 450 FTSTLVLSD---ARGRVHRWAVPPEGPSSKSDADKTTAQDVLE 489



 Score = 55.1 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 55/167 (32%), Gaps = 13/167 (7%)

Query: 46  LGDRILGLLIST-LLFNHFDSAKEGELSVR-FNSLVSAETCSQVARELDLASFIRVSSDL 103
           LG   + +++    +          + S     S  +     Q A E  L   +++ +  
Sbjct: 60  LGRSTIDVILIDAWIAQRQPEKVGTQASEHNRRSTEARRLLGQWATERGL---VQMGAGE 116

Query: 104 RKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQ 162
            +       S+   V   +   L L G  E+A   VD         + +    D  TE Q
Sbjct: 117 AQ---RPAPSVAEGVARQIFGLLSLTGAHEIARRLVDVICVGLDHGTDQIGGADPLTEAQ 173

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
                       Y+     GPDHD R+  +    G   A+G   +K+
Sbjct: 174 TLFAKDGL---SYE-YAEEGPDHDKRYIAIARTGGGRSARGEGRNKK 216


>gi|255970532|gb|ACU45742.1| dicer-like protein 1 [Sporothrix schenckii]
          Length = 1021

 Score = 58.9 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%)

Query: 31  SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE 90
           +       +YERLE LGD  L +  +  L+       E E  V    ++  +     A E
Sbjct: 784 NFQAGMGRNYERLELLGDSFLKMASTIALYTLAPDKNEFEYHVERMCMICNKNLFNNALE 843

Query: 91  LDLASFIR 98
           + L  +IR
Sbjct: 844 IGLEEYIR 851



 Score = 38.5 bits (89), Expect = 0.64,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)

Query: 13   IGYAFANRSLLEKALTHSSIS--HSYQESYERL 43
            +GY F    LL  A+ H S    +    SY+RL
Sbjct: 989  VGYTFTYPRLLRCAVMHPSYPRVYEQLPSYQRL 1021


>gi|194898749|ref|XP_001978930.1| GG11001 [Drosophila erecta]
 gi|190650633|gb|EDV47888.1| GG11001 [Drosophila erecta]
          Length = 321

 Score = 58.9 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 80/238 (33%), Gaps = 35/238 (14%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQE---------------SYERLEFLGDRILG 52
              KR+G +F + S L++A T  S +   ++                   L   G RI  
Sbjct: 69  AFSKRLGESF-DLSELQRAFTEKSFAQREEDRRRQLGIEESDLQIPHNSDLVEKGQRIAR 127

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
             +   L +         L    + L+S ET + V+  L     I            +  
Sbjct: 128 AYVEAFLQHQLPKVPNDGLQAIASFLLSTETLAHVSSHLGTKDLI--------QSTEYPP 179

Query: 113 SI--QADVVESLIAALYLDGGIEVAGTFVDKYW----KQRALKSGKFRRDAKTELQEWAH 166
           S    A  + ++I AL    GIE A  FV  +      Q+ L      ++    L++   
Sbjct: 180 SAESMAKSLHAVIGALASSSGIEKAFLFVRDFICTQLNQKDLLEVWTPQEPIQVLEKICQ 239

Query: 167 AKFGVTPEYKVTFRSGPDHDPR---FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            +     E ++    G   +     + V +  +     +G     + A + AA + L+
Sbjct: 240 ERKLGEAEPRLLGDCGK--NTVLAAYQVGIYANRQLLGKGFGEDLKTATETAAIDALQ 295


>gi|26324344|dbj|BAC25926.1| unnamed protein product [Mus musculus]
          Length = 125

 Score = 58.9 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             + P+YK+   SGP H   F+V + +           S + A+Q  A + L
Sbjct: 20  HSIQPQYKLLNESGPAHSKMFSVQLSLGEQTWES-EGSSIKKAQQAVANKAL 70


>gi|313212829|emb|CBY36745.1| unnamed protein product [Oikopleura dioica]
          Length = 596

 Score = 58.9 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 1/84 (1%)

Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
              K+   +S        + L +   A     P Y+V           F +   ++    
Sbjct: 389 NVIKETEKQSPDISLHPVSRLAQIQQAAKEREPIYQVISEKSVQRKKEFIMQCIVNDKV- 447

Query: 201 AQGMDCSKRAAEQVAAAEVLKREG 224
           +QG+  +K+ A+++AA  +L   G
Sbjct: 448 SQGIGPNKKTAKKIAAEAMLVIMG 471



 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 13/67 (19%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR-------------AAEQVA 215
             + P+Y +T   GP H   FTV +E+      +G   S +              A+  A
Sbjct: 81  NKLAPKYTLTGEEGPPHHKTFTVTLELGPGEKYEGSGTSIKKVNHLFCSKNNLFKAQHSA 140

Query: 216 AAEVLKR 222
           A + ++ 
Sbjct: 141 AKKAIEN 147



 Score = 40.1 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 12/72 (16%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG-----------LAPAQGMDCSKRAA 211
           E A  +   T +++     GP H   +++ + +                A+G   SK+ A
Sbjct: 294 ELALKRNL-TVQFEKISEEGPPHLKHYSIRLHVGNPEEQEDNEQITYFTAEGQAQSKKLA 352

Query: 212 EQVAAAEVLKRE 223
            + AA  VL   
Sbjct: 353 RRKAAITVLDEM 364



 Score = 38.1 bits (88), Expect = 1.00,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             F V + + G         +++ A+  AA + L+
Sbjct: 222 KLFVVELTV-GEKVFHAEGRTRQQAKHSAATQALE 255


>gi|207111610|ref|ZP_03245772.1| ribonuclease III [Helicobacter pylori HPKX_438_CA4C1]
          Length = 43

 Score = 58.9 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 18/41 (43%)

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           ++    GPDH   F + + I     A     SK+ AEQ  A
Sbjct: 1   QLLKEKGPDHHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 41


>gi|74192520|dbj|BAE43048.1| unnamed protein product [Mus musculus]
          Length = 705

 Score = 58.9 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++  + L E+A      T ++ +  +SGP H+PRF   V I+G         SK+ A+Q 
Sbjct: 8   KNPVSGLLEYAQFTS-QTCDFNLIEQSGPSHEPRFKFQVVINGREFPPAEAGSKKVAKQD 66

Query: 215 AAAEVL 220
           AA + +
Sbjct: 67  AAVKAM 72



 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   T L E  H K G + E+++  + GP HDP+F   V +           SK+ A+Q+
Sbjct: 119 KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQM 177

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 178 AAEEAMKAL 186



 Score = 52.8 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+  +Q AA   L
Sbjct: 233 LLEYARSHGFAA-EFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAAL 291

Query: 221 K 221
           +
Sbjct: 292 R 292


>gi|227206366|dbj|BAH57238.1| AT1G09700 [Arabidopsis thaliana]
          Length = 403

 Score = 58.9 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ--GMDCSKRAAE 212
            K+ LQE+A      TP Y++    GP H   F   V + G+      G   +++AAE
Sbjct: 16  FKSRLQEYAQKYKLPTPVYEIVKE-GPSHKSLFQSTVILDGVRYNSLPGF-FNRKAAE 71



 Score = 51.6 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 24/63 (38%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           K  LQE+A       P Y+           +FT  VEI G+        +K+ AE  A  
Sbjct: 87  KNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGR 146

Query: 218 EVL 220
             L
Sbjct: 147 TAL 149


>gi|85719268|ref|YP_460036.1| VP11 [Liao ning virus]
 gi|56785927|gb|AAW29094.1| VP11 [Liao ning virus]
          Length = 198

 Score = 58.5 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           QE+A       P Y+     GP H+  FT+          +G+  SK+ A  VAA ++L
Sbjct: 15  QEYAIKLSESAPSYEDVGFEGPPHNRSFTISATFRDKKY-EGIGPSKKVARSVAANKIL 72


>gi|313237061|emb|CBY25144.1| unnamed protein product [Oikopleura dioica]
          Length = 1307

 Score = 58.5 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 1/84 (1%)

Query: 141  KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
               K+   +S        + L +   A     P Y+V           F +   ++    
Sbjct: 1100 NVIKETEKQSPDISLHPVSRLAQIQQAAKEREPIYQVISEKSVQRKKEFIMQCIVNDKV- 1158

Query: 201  AQGMDCSKRAAEQVAAAEVLKREG 224
            +QG+  +K+ A+++AA  +L   G
Sbjct: 1159 SQGIGPNKKTAKKIAAEAMLVIMG 1182



 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 13/67 (19%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR-------------AAEQVA 215
             + P+Y +T   GP H   FTV +E+      +G   S +              A+  A
Sbjct: 792 NKLAPKYTLTGEEGPPHHKTFTVTLELGPGEKYEGSGTSIKKVNHLFCSKNNLFKAQHSA 851

Query: 216 AAEVLKR 222
           A + ++ 
Sbjct: 852 AKKAIEN 858



 Score = 39.7 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 12/72 (16%)

Query: 163  EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG-----------LAPAQGMDCSKRAA 211
            E A  +   T +++     GP H   +++ + +                A+G   SK+ A
Sbjct: 1005 ELALKRNL-TVQFEKISEEGPPHLKHYSIRLHVGNPEEQEDNEQITYFTAEGQAQSKKLA 1063

Query: 212  EQVAAAEVLKRE 223
             + AA  VL   
Sbjct: 1064 RRKAAITVLDEM 1075



 Score = 37.7 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             F V + + G         +++ A+  AA + L+
Sbjct: 933 KLFVVELTV-GEKVFHAEGRTRQQAKHSAATQALE 966


>gi|297806101|ref|XP_002870934.1| hypothetical protein ARALYDRAFT_486948 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316771|gb|EFH47193.1| hypothetical protein ARALYDRAFT_486948 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 770

 Score = 58.5 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 7/65 (10%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           + LQE    + G   EY+    +    +    F+V V  +G     GM  +K+ A Q AA
Sbjct: 659 SALQEIG-RRCGSKVEYRTVIST----NKELQFSVEVLFTGEKIGIGMGKTKKDAHQQAA 713

Query: 217 AEVLK 221
              L+
Sbjct: 714 ENALR 718


>gi|312379836|gb|EFR25996.1| hypothetical protein AND_08191 [Anopheles darlingi]
          Length = 1167

 Score = 58.5 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +Y++T  +GP H  RFTV +++           S + A+  AA + +
Sbjct: 366 QYRLTGETGPAHSKRFTVTLKLGDEEYTS-EGASIKKAQHKAAGDAI 411



 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 5/99 (5%)

Query: 130 GGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSGP--DH 185
           GG+           K++++  G    + +  + L +   A+    P Y +     P    
Sbjct: 850 GGVATLKKKARNLIKEKSVAEGGLSEKENPISRLMQIQQARKEKQPVYALVEGDRPTTGR 909

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
             +FT+ V  +G   A G+  +K+AA+  AA  +L   G
Sbjct: 910 RKQFTIEVTAAGKR-AVGVGMTKKAAKWTAAEALLIELG 947



 Score = 54.7 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
                 +   + + E A  +   +  ++V    GP H   F    ++ G    +G    K
Sbjct: 727 DPNAELKSPISLVHEMAVQRQL-SVVFEVISEKGPPHMTVFVTQCKV-GTIVTEGEGTGK 784

Query: 209 RAAEQVAAAEVLKRE 223
           + +++ AA ++L++ 
Sbjct: 785 KLSKKRAAEKMLEQL 799


>gi|195572230|ref|XP_002104099.1| GD18627 [Drosophila simulans]
 gi|194200026|gb|EDX13602.1| GD18627 [Drosophila simulans]
          Length = 899

 Score = 58.5 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEV 219
           L E       + P+YK+    GP ++  F   VE++G          +K+ A+  AAA  
Sbjct: 830 LNELTSKNKWMPPQYKLREDIGPAYNRSFLFSVEVNGQTFTPDRGCNNKKEAKLNAAALC 889

Query: 220 LKREGIW 226
           L+  GI 
Sbjct: 890 LRALGIL 896


>gi|195330360|ref|XP_002031872.1| GM23818 [Drosophila sechellia]
 gi|194120815|gb|EDW42858.1| GM23818 [Drosophila sechellia]
          Length = 899

 Score = 58.5 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVAAAEV 219
           L E       + P+YK+    GP ++  F   VE++G          +K+ A+  AAA  
Sbjct: 830 LNELTSKNKWMPPQYKLREDIGPAYNRSFLFSVEVNGQTFTPDRGCNNKKEAKLNAAALC 889

Query: 220 LKREGIW 226
           L+  GI 
Sbjct: 890 LRALGIL 896


>gi|125777342|ref|XP_001359575.1| GA20947 [Drosophila pseudoobscura pseudoobscura]
 gi|54639322|gb|EAL28724.1| GA20947 [Drosophila pseudoobscura pseudoobscura]
          Length = 851

 Score = 58.2 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC---SKRAAEQVAAA 217
           L E         P+Y +   SGP H   F   VEI+G +     D    +K+ A+  AA 
Sbjct: 782 LNELTSKNRWTPPQYILQQESGPSHIRSFLFSVEINGQSYTP--DRPCNNKKEAKLNAAK 839

Query: 218 EVLKREGIW 226
             L+  GI 
Sbjct: 840 LCLESLGIL 848


>gi|74001137|ref|XP_856935.1| PREDICTED: similar to SON DNA-binding protein isoform A isoform 9
           [Canis familiaris]
          Length = 152

 Score = 58.2 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213
           +   + L E  + +    PE+ +   SGPDH   F   V I+G A        +K+ A+ 
Sbjct: 63  KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 122

Query: 214 VAAAEVLKREGI 225
            AA  VL+  G+
Sbjct: 123 TAATVVLQAMGL 134


>gi|296416003|ref|XP_002837671.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295633552|emb|CAZ81862.1| unnamed protein product [Tuber melanosporum]
          Length = 321

 Score = 58.2 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 57/125 (45%), Gaps = 11/125 (8%)

Query: 15  YAFANRSL---LEKALTH-SSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           Y F+++ L   L  ++ H  S +     ++++E L ++G  +L  L + LL + F ++K+
Sbjct: 23  YDFSSKELEQLLYASVVHERSFASSPEQRDTFEALTWVGGSVLRGLTTVLLASMFPTSKK 82

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
             L+    +L      + ++R L L + I +              I + +  + + A+  
Sbjct: 83  NVLNDIRQALEDKTFYAHLSRRLGLHNHISL-----TYPAGESDHILSGLFTAYVGAIQR 137

Query: 129 DGGIE 133
           + G++
Sbjct: 138 ELGVD 142



 Score = 37.0 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 26/65 (40%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             + L E+A       P +  T         ++   + ++G   A  +  +K  A+ +A+
Sbjct: 226 YTSRLMEYAAKCKLPQPSFNFTDNGCQGAAIQWCATINMNGADIASAVASTKLEAKHLAS 285

Query: 217 AEVLK 221
            + L+
Sbjct: 286 KDALQ 290


>gi|17046379|gb|AAL34500.1|AF380182_1 SON DNA binding protein isoform D [Homo sapiens]
          Length = 147

 Score = 58.2 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213
           +   + L E  + +    PE+ +   SGPDH   F   V I+G A        +K+ A+ 
Sbjct: 58  KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKKHAKA 117

Query: 214 VAAAEVLKREGI 225
            AA  VL+  G+
Sbjct: 118 TAATVVLQAMGL 129


>gi|327264051|ref|XP_003216830.1| PREDICTED: interleukin enhancer-binding factor 3-like isoform 2
           [Anolis carolinensis]
          Length = 890

 Score = 58.2 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G+   +    SK+ A+   A +VL+  G+ T
Sbjct: 409 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGITY-EASGPSKKTAKLHVAVKVLQDMGLPT 467



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 520 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 571


>gi|327264049|ref|XP_003216829.1| PREDICTED: interleukin enhancer-binding factor 3-like isoform 1
           [Anolis carolinensis]
          Length = 835

 Score = 58.2 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G+   +    SK+ A+   A +VL+  G+ T
Sbjct: 409 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGITY-EASGPSKKTAKLHVAVKVLQDMGLPT 467



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 520 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 571


>gi|111185526|gb|AAH60382.2| LOC398937 protein [Xenopus laevis]
          Length = 426

 Score = 58.2 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           K  ++  ++VT  +GP H   F   V + G     G   SK+ +++ AA  VL+  
Sbjct: 280 KRNMSVNFEVTKETGPPHMKSFVTKVIV-GEFLGNGEGKSKKISKKNAAIAVLEEL 334



 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            +  + L +   AK    PEY +    G      F + V++ G   A+G   +
Sbjct: 370 MNPISRLAQIQQAKKDKEPEYILITERGLPRRREFVMQVKV-GNHTAEGTGTN 421



 Score = 44.3 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 1/39 (2%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             + P YK+    GP H   FTV + +      +    S
Sbjct: 89  NKIQPLYKLLSEKGPAHSKMFTVQLTLGDQYW-EAEGTS 126


>gi|68533781|gb|AAH99038.1| LOC398937 protein [Xenopus laevis]
          Length = 380

 Score = 58.2 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           K  ++  ++VT  +GP H   F   V + G     G   SK+ +++ AA  VL+  
Sbjct: 303 KRNMSVNFEVTKETGPPHMKSFVTKVIV-GEFLGNGEGKSKKISKKNAAIAVLEEL 357


>gi|242092788|ref|XP_002436884.1| hypothetical protein SORBIDRAFT_10g010510 [Sorghum bicolor]
 gi|241915107|gb|EER88251.1| hypothetical protein SORBIDRAFT_10g010510 [Sorghum bicolor]
          Length = 243

 Score = 58.2 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
           K  + + D KT+L  +A     V P YK+    GP H PRF   V I G    +
Sbjct: 73  KPFESKTDFKTQLSVYAQKLGKVPPLYKLIQE-GPAHAPRFNAEVTIDGQTFGR 125



 Score = 52.4 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRA 210
            K+EL      K    PE+ V    GP H P FT  V ++      G    SK+ 
Sbjct: 2   YKSELHALCSKKHCPKPEF-VHTCEGPVHSPVFTATVTLNEKKFCAGEGTPSKKE 55



 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 3/71 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVA 215
            K  +QE A  +  + P Y     +  ++   +   V+I      +G    SK+ AE  A
Sbjct: 163 YKNFIQEIAQKEGILLPVYNTVPTN-KEYSTAYKSSVQIK-CEIFEGEPRTSKKQAEMNA 220

Query: 216 AAEVLKREGIW 226
           A        + 
Sbjct: 221 AKIAYHHLALL 231


>gi|195153156|ref|XP_002017495.1| GL22329 [Drosophila persimilis]
 gi|194112552|gb|EDW34595.1| GL22329 [Drosophila persimilis]
          Length = 854

 Score = 58.2 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC---SKRAAEQVAAA 217
           L E         P+Y +   SGP H   F   VEI+G +     D    +K+ A+  AA 
Sbjct: 785 LNELTSKNRWTPPQYILQQESGPSHIRSFLFSVEINGQSYTP--DRPCNNKKEAKLNAAK 842

Query: 218 EVLKREGIW 226
             L+  GI 
Sbjct: 843 LCLESLGIL 851


>gi|141795447|gb|AAI34870.1| Sb:cb627 protein [Danio rerio]
          Length = 658

 Score = 58.2 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 4/87 (4%)

Query: 139 VDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197
           + +  ++  L S     +     L      +     +YK+  +SGP H P FT+ V++ G
Sbjct: 384 MKRNLRKAVLDSKAIDSNQPMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDG 441

Query: 198 LAPAQGMDCSKRAAEQVAAAEVLKREG 224
               +    SK+ A+   A +VL+  G
Sbjct: 442 TVY-EASGSSKKTAKLHVAVKVLQAMG 467



 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y++   SG  HD RF + VE+ G    +G   +
Sbjct: 525 KNPVMELNEKRRGL--KYELISESGGSHDKRFVMEVEVDGQK-FRGAGPN 571


>gi|326671063|ref|XP_707047.3| PREDICTED: spermatid perinuclear RNA-binding protein isoform 2
           [Danio rerio]
          Length = 690

 Score = 58.2 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 4/87 (4%)

Query: 139 VDKYWKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197
           + +  ++  L S     +     L      +     +YK+  +SGP H P FT+ V++ G
Sbjct: 384 MKRNLRKAVLDSKAIDSNQPMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDG 441

Query: 198 LAPAQGMDCSKRAAEQVAAAEVLKREG 224
               +    SK+ A+   A +VL+  G
Sbjct: 442 TVY-EASGSSKKTAKLHVAVKVLQAMG 467



 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y++   SG  HD RF + VE+ G    +G   +
Sbjct: 525 KNPVMELNEKRRGL--KYELISESGGSHDKRFVMEVEVDGQK-FRGAGPN 571


>gi|297805542|ref|XP_002870655.1| dsRNA-binding protein 5 [Arabidopsis lyrata subsp. lyrata]
 gi|297316491|gb|EFH46914.1| dsRNA-binding protein 5 [Arabidopsis lyrata subsp. lyrata]
          Length = 394

 Score = 58.2 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 25/65 (38%), Gaps = 8/65 (12%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK----RAAE 212
            K +LQE A       P Y    R GPDH PRF   V  +G         +     R AE
Sbjct: 2   YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFES---PTYCSTLRQAE 57

Query: 213 QVAAA 217
             AA 
Sbjct: 58  HAAAE 62



 Score = 55.9 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  LQE AH      P Y    RSG  H P F+  VE++G++       +K+ AE+ AA
Sbjct: 88  YKNLLQETAHRAGLDLPMYTSV-RSGSCHFPGFSCTVELAGMSFTGESAKTKKQAEKNAA 146

Query: 217 AEV---LKRE 223
                 LKR 
Sbjct: 147 IAAWSSLKRM 156


>gi|30693732|ref|NP_198923.2| DRB5 (DSRNA-BINDING PROTEIN 5); double-stranded RNA binding
           [Arabidopsis thaliana]
 gi|75244423|sp|Q8GY79|DRB5_ARATH RecName: Full=Double-stranded RNA-binding protein 5; AltName:
           Full=dsRNA-binding protein 5; Short=AtDRB5
 gi|26450682|dbj|BAC42450.1| unknown protein [Arabidopsis thaliana]
 gi|32189297|gb|AAP75803.1| At5g41070 [Arabidopsis thaliana]
 gi|332007250|gb|AED94633.1| dsRNA-binding protein 5 [Arabidopsis thaliana]
          Length = 393

 Score = 58.2 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 25/65 (38%), Gaps = 8/65 (12%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK----RAAE 212
            K +LQE A       P Y    R GPDH PRF   V  +G         +     R AE
Sbjct: 2   YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFES---PTYCSTLRQAE 57

Query: 213 QVAAA 217
             AA 
Sbjct: 58  HAAAE 62



 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  LQE AH      P Y    RSG  H P F+  VE++G+        +K+ AE+ AA
Sbjct: 88  YKNLLQETAHRAGLDLPMYTSV-RSGSCHFPGFSCTVELAGMTFTGESAKTKKQAEKNAA 146

Query: 217 AEV---LKRE 223
                 LK+ 
Sbjct: 147 IAAWSSLKKM 156


>gi|149048040|gb|EDM00616.1| adenosine deaminase, RNA-specific, isoform CRA_a [Rattus
           norvegicus]
          Length = 634

 Score = 58.2 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   T L E  H K G + E+++  + GP HDP+F   V +           SK+ A+Q+
Sbjct: 48  KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPSVSAPSKKVAKQM 106

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 107 AAEEAMKAL 115



 Score = 52.8 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+  +Q AA   L
Sbjct: 162 LLEYARSHGFAA-EFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAAL 220

Query: 221 K 221
           +
Sbjct: 221 R 221


>gi|9759153|dbj|BAB09709.1| unnamed protein product [Arabidopsis thaliana]
          Length = 384

 Score = 58.2 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 25/65 (38%), Gaps = 8/65 (12%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK----RAAE 212
            K +LQE A       P Y    R GPDH PRF   V  +G         +     R AE
Sbjct: 2   YKNQLQELAQRSCFNLPSYTCI-REGPDHAPRFKASVNFNGEIFES---PTYCSTLRQAE 57

Query: 213 QVAAA 217
             AA 
Sbjct: 58  HAAAE 62



 Score = 55.1 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  LQE AH      P Y    RSG  H P F+  VE++G+        +K+ AE+ AA
Sbjct: 88  YKNLLQETAHRAGLDLPMYTSV-RSGSCHFPGFSCTVELAGMTFTGESAKTKKQAEKNAA 146

Query: 217 AEV---LKRE 223
                 LK++
Sbjct: 147 IAAWSSLKKK 156


>gi|119183947|ref|XP_001242948.1| hypothetical protein CIMG_06844 [Coccidioides immitis RS]
          Length = 238

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 41/113 (36%), Gaps = 11/113 (9%)

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR------RDAKTELQEWAHAKF 169
           A  V++L+ A+YL  G  VA  F  +++  R L            RD    L +    + 
Sbjct: 94  ATFVQALMGAIYLHCGRPVAKQFFKEHFMSRQLPVADLFSFAQPTRD----LTKLCAREG 149

Query: 170 GVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              P  ++   +G     P F V +        +G   S   A   AA   LK
Sbjct: 150 FERPVARIISETGRLSRHPVFVVGIFSGQDLLGEGSGPSLTEARFRAAVAALK 202


>gi|157130321|ref|XP_001655660.1| hypothetical protein AaeL_AAEL011753 [Aedes aegypti]
 gi|108871912|gb|EAT36137.1| conserved hypothetical protein [Aedes aegypti]
          Length = 318

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 48/135 (35%), Gaps = 16/135 (11%)

Query: 102 DLRKDVCSFMTSIQADVVESL------IAALYLDGGIEVAGTFVDKYWKQ--RALKSGKF 153
               D  +  + +    V +L      I     D   + A   +   +++    +     
Sbjct: 34  GEEIDGGNPNSKVFTTSVLALGFTSSGIGRSKKDSKHDAAYKLLKLLFEKGLSDIDVDND 93

Query: 154 RR-------DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206
                    D  TE+++    +    PE+     SGP H P F     I  +   +G+  
Sbjct: 94  EHFLAVLSSDKVTEVRDICVQRNFEMPEFNCVRSSGPSHAPEFEYECRIGAIVR-RGIHK 152

Query: 207 SKRAAEQVAAAEVLK 221
           +K+ A+Q A  E++K
Sbjct: 153 TKKGAKQAACNEMIK 167



 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 4/68 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRS---GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
             TELQE   +K    P Y  T      G  +   FT  V   G   + G+  SK+ ++ 
Sbjct: 12  PITELQELCVSKKAPHPLYTFTGEEIDGGNPNSKVFTTSVLALGFT-SSGIGRSKKDSKH 70

Query: 214 VAAAEVLK 221
            AA ++LK
Sbjct: 71  DAAYKLLK 78


>gi|47523704|ref|NP_999484.1| double stranded RNA-dependent protein kinase [Sus scrofa]
 gi|29292936|dbj|BAC66439.1| double stranded RNA-dependent protein kinase [Sus scrofa]
          Length = 537

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 24/56 (42%)

Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             K  V  +Y+   ++GP H+ RFT  V I      +    SK+ A+  A     +
Sbjct: 18  QQKNDVILKYRELCKTGPAHNLRFTYQVVIDEKEFPKAEGRSKKEAKNAAVKLAFE 73



 Score = 55.1 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 20/44 (45%)

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             G D   +F    +I       G+  +K+ A+Q+AA +  ++ 
Sbjct: 122 EPGEDGPEKFHYKCKIGRKVYGSGVGSTKQEAKQLAAKQAYEKL 165


>gi|302410091|ref|XP_003002879.1| RNase III domain-containing protein [Verticillium albo-atrum
           VaMs.102]
 gi|261357903|gb|EEY20331.1| RNase III domain-containing protein [Verticillium albo-atrum
           VaMs.102]
          Length = 279

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 54/145 (37%), Gaps = 21/145 (14%)

Query: 25  KALTHSSISHSYQESYERLEFLG---------DRIL------GLLISTLLFNHFDSAKEG 69
            A+TH S  +  +   +RL FLG           IL      G +++             
Sbjct: 133 LAVTHKSFDYGRRGFNDRLAFLGRQAVVLEVAQSILSAAPKPGAVVADEFNRQPFEHPAL 192

Query: 70  ELSVRFNS-----LVSAETCSQVARELDLASFIRVSSDL-RKDVCSFMTSIQADVVESLI 123
                FN+     +VS E   Q+A ++ L   +R    L      S +  +    V ++I
Sbjct: 193 ARLDNFNAQLPHDVVSREKIEQLAIDVGLDKVLRWKPRLPENLAGSGVQVVLNGAVHAII 252

Query: 124 AALYLDGGIEVAGTFVDKYWKQRAL 148
            A+ L  G EVAG  V +    + +
Sbjct: 253 GAISLQHGAEVAGKIVRERILSQLV 277


>gi|312080789|ref|XP_003142750.1| hypothetical protein LOAG_07168 [Loa loa]
 gi|307762087|gb|EFO21321.1| hypothetical protein LOAG_07168 [Loa loa]
          Length = 397

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 81/233 (34%), Gaps = 30/233 (12%)

Query: 12  RIGYAFANRSLLEKALTHSSI-------------------SHSYQESYERLEFLGDRILG 52
           RIG    ++++L +ALT +S                    S+  +E  E+L  LG  +L 
Sbjct: 69  RIGAPETDKNVLIQALTDNSFYQRADIAEESANAQPSKQESYEMKEHNEQLIQLGSELLW 128

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
                 L      A E  +S     L+S E  + +A  L + + IR           F  
Sbjct: 129 KSTCAYLRYGLPHAPEELISSLALKLISDEQIATLATYLGINNLIR--------TAEFPP 180

Query: 113 SI--QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170
           S     +  ++LIA L     I +    +        ++      +    L+    +  G
Sbjct: 181 SNASLCNAFKALIATLPYQRAIALIRNVIMAQLVDLDIEEVFPLAEPLAVLRFVIFSSTG 240

Query: 171 VTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +  E ++   +G    +P F   +  +     QG   +   A  +AA   L R
Sbjct: 241 MEVEPRLLRSAGEISAEPIFIAGIYANKRLIGQGPGETISIAVDMAAMNALMR 293


>gi|218189252|gb|EEC71679.1| hypothetical protein OsI_04153 [Oryza sativa Indica Group]
          Length = 559

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 44/128 (34%), Gaps = 6/128 (4%)

Query: 22  LLEKALTH------SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
           LL  A  H       + +   +  + RL FLG  +L L         +     G +  R 
Sbjct: 164 LLYLAFQHLDTSCERTRTRHVRSGHSRLWFLGQYVLELAFCEFFLQRYPRESPGPMRERV 223

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
            +L+      +  +   L + +    DL K +          V  +L  A+YL  G+   
Sbjct: 224 FALIGKRAIPKWIKAASLHNLVFPYDDLDKMIRKDREPPAKAVFWALFGAIYLCFGMPEV 283

Query: 136 GTFVDKYW 143
              + + +
Sbjct: 284 YRVLFEAF 291


>gi|241954798|ref|XP_002420120.1| RNase III, putative; ribonuclease III, putative [Candida
           dubliniensis CD36]
 gi|223643461|emb|CAX42340.1| RNase III, putative [Candida dubliniensis CD36]
          Length = 666

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 78/234 (33%), Gaps = 36/234 (15%)

Query: 22  LLEKALTHSSISHS-----------YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
           LL + +T  S                +    RL   G  I+ L +  +L   +    + +
Sbjct: 160 LLIRIMTDRSYRQPSDFIESSSSDYNKSHNGRLVLRGRAIMQLCLVEVLEESYPRLLDED 219

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           +    + L++    ++ A   +L   ++ +  +  D       I  ++  + +  L  +G
Sbjct: 220 IQFISHKLMTPIILTKFAFGYNLVDHLKYNFSVDADY-EEKLQIIGNIFLAYMGGLKTEG 278

Query: 131 -GIEVAGTFVDKYWKQRALKSGKFRRD---AKTELQEW-------AHAKFGV--TPEYKV 177
             +     FV + ++   + +    ++   +K  L E         +  +       Y++
Sbjct: 279 YDLNDLKLFVKRLYEP--VIADYMNKNDVLSKVALVELDLLFKSVTNMLYLPRENIRYEI 336

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVAAAEVLKREG----IW 226
                  H       + +       G+   S   A+  AA ++L  +G    IW
Sbjct: 337 IQVESDPH----VARILVDNEELGSGVSSVSFEEAKCRAAQDILNDQGRIMKIW 386



 Score = 40.4 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 4/69 (5%)

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
           K   +AK +L          TP+Y+   +  P+    + V+V + G+    G D +K+ A
Sbjct: 591 KVDTNAKNDLYSKLGKAKISTPQYE--DKISPE--KVYHVLVSVKGIYLGGGFDLNKKLA 646

Query: 212 EQVAAAEVL 220
            Q AA   L
Sbjct: 647 AQKAAMCAL 655


>gi|222619424|gb|EEE55556.1| hypothetical protein OsJ_03820 [Oryza sativa Japonica Group]
          Length = 511

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 44/128 (34%), Gaps = 6/128 (4%)

Query: 22  LLEKALTH------SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
           LL  A  H       + +   +  + RL FLG  +L L         +     G +  R 
Sbjct: 142 LLYLAFQHLDTSCERTRTRHVRSGHSRLWFLGQYVLELAFCEFFLQRYPRESPGPMRERV 201

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
            +L+      +  +   L + +    DL K +          V  +L  A+YL  G+   
Sbjct: 202 FALIGKRAIPKWIKAASLHNLVFPYDDLDKMIRKDREPPAKAVFWALFGAIYLCFGMPEV 261

Query: 136 GTFVDKYW 143
              + + +
Sbjct: 262 YRVLFEAF 269


>gi|326427167|gb|EGD72737.1| hypothetical protein PTSG_04466 [Salpingoeca sp. ATCC 50818]
          Length = 2717

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 58/151 (38%), Gaps = 18/151 (11%)

Query: 6    YSTLEKRIGYA--FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
             + L + +G+     NR+LL +ALTH S  ++   + E+L  +G   + LL         
Sbjct: 2120 IAPLAEHLGFTGPSCNRALLLEALTHRSFLNNQLGNNEKLALIGRLCVRLLCIDKFVQTQ 2179

Query: 64   DSAKE-GELSVRFNSLVSAETCSQVARE-LDLASFIRVSSDL-------RKDVCSFMTSI 114
            D+A          + +VS E   Q A +   +  +I   S                   +
Sbjct: 2180 DNAPSVSSWDDICDEVVSTELLVQKAVDMFGMLPYILHDSGEFAELAASCAHAVRHRLPL 2239

Query: 115  QADVVE------SLIAALYLDGGIE-VAGTF 138
             A   E      S+  A+++  G++ +A  +
Sbjct: 2240 PAGAEEVASFTLSVFGAVFMHYGLDGLAERW 2270



 Score = 39.7 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 22/53 (41%)

Query: 41   ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL 93
            E L  LGD  L    +  L+  + S   G +  +   L S    S+ ++EL  
Sbjct: 1956 EHLAMLGDAYLQFAAAVHLYLKYPSRAVGPMCAQIAWLRSDGYLSKRSQELGF 2008


>gi|198457607|ref|XP_001360731.2| GA19106 [Drosophila pseudoobscura pseudoobscura]
 gi|198136042|gb|EAL25306.2| GA19106 [Drosophila pseudoobscura pseudoobscura]
          Length = 1008

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 3/68 (4%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVVEISGLAPAQGMDCSKRAAEQ 213
           +  T+L +    +    P +++  ++G +   R  F + V  SG   A+G   SK+ A++
Sbjct: 718 NPITKLIQLQQTRKEKEPIFELIAKNGNEASRRREFVMEVSASG-TTARGTGNSKKLAKR 776

Query: 214 VAAAEVLK 221
            AA  +L+
Sbjct: 777 SAAQALLE 784



 Score = 55.1 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 6/75 (8%)

Query: 150 SGKFRRDAKTEL---QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206
           SG+  +D KT +    E A     +T +Y++T   GP H   FTV +++           
Sbjct: 307 SGRSGKD-KTPMCLVNELA-RYNKITHQYRLTGERGPAHCKTFTVTLKLGDEEY-SADGF 363

Query: 207 SKRAAEQVAAAEVLK 221
             + A+ +AA+  ++
Sbjct: 364 KIKKAQHMAASRAIE 378



 Score = 45.1 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           K  +T  +KV    GP H   F     + G    +G    K+ +++ +A ++L
Sbjct: 596 KRNMTVHFKVLREDGPAHMKNFITACVV-GSIVTEGEGNGKKLSKKRSAEKML 647


>gi|195150825|ref|XP_002016351.1| GL10536 [Drosophila persimilis]
 gi|194110198|gb|EDW32241.1| GL10536 [Drosophila persimilis]
          Length = 638

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 3/68 (4%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVVEISGLAPAQGMDCSKRAAEQ 213
           +  T+L +    +    P +++  ++G +   R  F + V  SG   A+G   SK+ A++
Sbjct: 348 NPITKLIQLQQTRKEKEPIFELIAKNGNEASRRREFVMEVSASG-TTARGTGNSKKLAKR 406

Query: 214 VAAAEVLK 221
            AA  +L+
Sbjct: 407 SAAQALLE 414



 Score = 45.1 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           K  +T  +KV    GP H   F     + G    +G    K+ +++ +A ++L
Sbjct: 226 KRNMTVHFKVLREDGPAHMKNFITACVV-GSIVTEGEGNGKKLSKKRSAEKML 277


>gi|195335472|ref|XP_002034389.1| GM19927 [Drosophila sechellia]
 gi|194126359|gb|EDW48402.1| GM19927 [Drosophila sechellia]
          Length = 1035

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 4/80 (5%)

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVVEISGLAPA 201
           K + +       +  T+L +    +    P +++  ++G +   R  F + V  SG + A
Sbjct: 702 KDKLIDMDDAD-NPITKLIQLQQTRKEKEPIFELIAKNGNETARRREFVMEVSASG-STA 759

Query: 202 QGMDCSKRAAEQVAAAEVLK 221
           +G   SK+ A++ AA  + +
Sbjct: 760 RGTGNSKKLAKRNAAQALFE 779



 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y++T   GP H   FTV + +             + A+ +AA++ ++
Sbjct: 330 QYRLTGERGPAHCKTFTVTLMLGDEEY-SADGFKIKKAQHLAASKAIE 376



 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           K  +T  +KV    GP H   F     + G    +G    K+ +++ AA ++L
Sbjct: 591 KRNMTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKVSKKRAAEKML 642


>gi|24654775|ref|NP_725748.1| staufen, isoform B [Drosophila melanogaster]
 gi|7302673|gb|AAF57753.1| staufen, isoform B [Drosophila melanogaster]
 gi|27819870|gb|AAO24983.1| LP08764p [Drosophila melanogaster]
          Length = 914

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 4/80 (5%)

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVVEISGLAPA 201
           K + +       +  T+L +    +    P +++  ++G +   R  F + V  SG + A
Sbjct: 588 KDKLIDMDDAD-NPITKLIQLQQTRKEKEPIFELIAKNGNETARRREFVMEVSASG-STA 645

Query: 202 QGMDCSKRAAEQVAAAEVLK 221
           +G   SK+ A++ AA  + +
Sbjct: 646 RGTGNSKKLAKRNAAQALFE 665



 Score = 55.1 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y++T   GP H   FTV + +             + A+ +AA++ ++
Sbjct: 216 QYRLTEERGPAHCKTFTVTLMLGDEEY-SADGFKIKKAQHLAASKAIE 262



 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           K  +T  +KV    GP H   F     + G    +G    K+ +++ AA ++L
Sbjct: 477 KRNMTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKVSKKRAAEKML 528


>gi|241600828|ref|XP_002405209.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
 gi|215502478|gb|EEC11972.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
          Length = 1095

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAA 216
           KT L  W   K  VTP+Y+    +GP H  RF   V + G      G   +K+ A+  AA
Sbjct: 6   KTFLYAWC-GKNKVTPQYEF-KNTGPRHRQRFLCEVRVEGYDYVGAGNSTNKKDAQTNAA 63

Query: 217 AEVLK 221
            + L+
Sbjct: 64  RDFLQ 68



 Score = 39.7 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 30/73 (41%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV----VE-ISGLAPAQGMDCSKRA 210
           +AK+ L ++      +  +Y      GP H+  F       V  ++    A+    +K+ 
Sbjct: 154 NAKSRLHQFMQ-MNKINADY-TYSEIGPSHNKSFIAEMAIFVRKLNMKVHAREQGSNKQI 211

Query: 211 AEQVAAAEVLKRE 223
           A +  A  ++++ 
Sbjct: 212 ASKSCALSLVRQL 224


>gi|115440603|ref|NP_001044581.1| Os01g0810100 [Oryza sativa Japonica Group]
 gi|20160696|dbj|BAB89639.1| unknown protein [Oryza sativa Japonica Group]
 gi|113534112|dbj|BAF06495.1| Os01g0810100 [Oryza sativa Japonica Group]
 gi|215701330|dbj|BAG92754.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215704464|dbj|BAG93898.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 533

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 44/128 (34%), Gaps = 6/128 (4%)

Query: 22  LLEKALTH------SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
           LL  A  H       + +   +  + RL FLG  +L L         +     G +  R 
Sbjct: 164 LLYLAFQHLDTSCERTRTRHVRSGHSRLWFLGQYVLELAFCEFFLQRYPRESPGPMRERV 223

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
            +L+      +  +   L + +    DL K +          V  +L  A+YL  G+   
Sbjct: 224 FALIGKRAIPKWIKAASLHNLVFPYDDLDKMIRKDREPPAKAVFWALFGAIYLCFGMPEV 283

Query: 136 GTFVDKYW 143
              + + +
Sbjct: 284 YRVLFEAF 291


>gi|92097815|gb|AAI15333.1| Sb:cb627 protein [Danio rerio]
          Length = 658

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +     +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  G
Sbjct: 412 RIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTVY-EASGSSKKTAKLHVAVKVLQAMG 467



 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y++   SG  HD RF + VE+ G    +G   +
Sbjct: 525 KNPVMELNEKRRGL--KYELISESGGSHDKRFVMEVEVDGQK-FRGAGPN 571


>gi|71834292|ref|NP_001025236.1| interleukin enhancer binding factor 3a [Danio rerio]
 gi|66911683|gb|AAH96956.1| Zgc:113842 [Danio rerio]
          Length = 820

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 3/72 (4%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
           R++    L +    + G    YK+  ++GP+H+P+F++ VE+ G+   +    SKR+A+ 
Sbjct: 456 RKEPPNALMKLNQLRPGT--VYKLASQTGPEHEPQFSMTVEVDGVTY-EATGPSKRSAKL 512

Query: 214 VAAAEVLKREGI 225
             A +VL   G+
Sbjct: 513 HVAQKVLVALGV 524



 Score = 39.3 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206
             +  K  + E    +   + +Y++    G  +D  FT+ V++ G    QG   
Sbjct: 567 LTKHGKNPVMELNEKRR--SLKYELVSVKGRFNDKTFTIEVDVDGQK-FQGSGS 617


>gi|195584465|ref|XP_002082027.1| GD25416 [Drosophila simulans]
 gi|194194036|gb|EDX07612.1| GD25416 [Drosophila simulans]
          Length = 1035

 Score = 57.4 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 4/80 (5%)

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVVEISGLAPA 201
           K + +       +  T+L +    +    P +++  ++G +   R  F + V  SG + A
Sbjct: 702 KDKLIDMDDAD-NPITKLIQLQQTRKEKEPIFELIAKNGNETARRREFVMEVSASG-STA 759

Query: 202 QGMDCSKRAAEQVAAAEVLK 221
           +G   SK+ A++ AA  + +
Sbjct: 760 RGTGNSKKLAKRNAAQALFE 779



 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y++T   GP H   FTV + +             + A+ +AA++ ++
Sbjct: 330 QYRLTGERGPAHCKTFTVTLMLGDEEY-SADGFKIKKAQHLAASKAIE 376



 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           K  +T  +KV    GP H   F     + G    +G    K+ +++ AA ++L
Sbjct: 591 KRNMTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKVSKKRAAEKML 642


>gi|71019739|ref|XP_760100.1| hypothetical protein UM03953.1 [Ustilago maydis 521]
 gi|46099865|gb|EAK85098.1| hypothetical protein UM03953.1 [Ustilago maydis 521]
          Length = 281

 Score = 57.4 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 56/150 (37%), Gaps = 16/150 (10%)

Query: 18  ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLI-----STLLFNHFDSAKEGELS 72
           +N  L  +A+TH S  ++ +    R  FLG R L LL      + L       A    +S
Sbjct: 112 SNPDLALRAVTHESYLNAREGHNRRFAFLGRRTLKLLTTLYLHARLQSTTKGDAAHNYIS 171

Query: 73  VRFNSLVSAETCS-------QVARELDLASFIRVSSDLRKDVCSFMT----SIQADVVES 121
               S    ++         ++ REL L + +R +  +              ++   VE+
Sbjct: 172 RLLESPTGVDSILTTHRLGDKIGRELGLENVMRWTPAVSDGQVGPRETGLFKVRGVAVEA 231

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSG 151
           L+ A+Y   G   A  F  ++     L  G
Sbjct: 232 LVGAIYHQKGASEASKFFQRWILPSLLHDG 261


>gi|50286821|ref|XP_445840.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49525146|emb|CAG58759.1| unnamed protein product [Candida glabrata]
          Length = 226

 Score = 57.4 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 6/129 (4%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL-S 72
           G   ++ ++L + LTH S +H  +   E+L  LG + L L  +  + +       G L +
Sbjct: 70  GIELSDAAIL-QCLTHKSFAHGSRPYNEKLNLLGSQYLKLQAA--MHSVGPENSFGNLGT 126

Query: 73  VRFNSLVSAETCSQ--VARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
                LVS +T ++  +A+ L+   F +VS  L        + + + V+ S I A+ L  
Sbjct: 127 PVSKGLVSYQTAAEYVIAKNLEPLVFWKVSDPLNDGPIKGKSKVMSTVLNSFIGAILLQQ 186

Query: 131 GIEVAGTFV 139
           G + A  F+
Sbjct: 187 GEKKASQFI 195


>gi|256076242|ref|XP_002574422.1| hypothetical protein [Schistosoma mansoni]
 gi|238659627|emb|CAZ30655.1| expressed protein [Schistosoma mansoni]
          Length = 351

 Score = 57.4 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 77/241 (31%), Gaps = 27/241 (11%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISH-----------SYQESYERLEFLGDRILGL 53
             S    RIG     + L+E  LT  S S               +    L  LG  +   
Sbjct: 68  ELSAFLSRIGEKLE-KDLIEVVLTDRSYSSFWSVKKAESDSKIIQDNSELAALGFSVSEN 126

Query: 54  LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
            +   L + +    E  +      L S    + +A  L +   +  S  +       +++
Sbjct: 127 FLYPFLRSVYPQFPEEWIMTIVQYLKSPSELAFIAAHLGIKDIVLYSDQVDYSSNKIISA 186

Query: 114 -----IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR----DAKTELQEW 164
                + A  + +L+ AL  D  +E A  F+  +   R             +    LQ  
Sbjct: 187 PPNLDVLAHALMALVGALAKDK-MEKAHLFIRDFILTRLSDIDLTELISIPNPLPLLQGI 245

Query: 165 AHAKFGVTPEYKVTFRSGPDHDPR---FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             ++    PE ++ ++S    +     F V +        +    S   AE+ A  + +K
Sbjct: 246 LQSEGRGPPETRLLYQS--SMNTVLACFEVGIYSDCQLVGEAPGESILIAEEEALRQSIK 303

Query: 222 R 222
            
Sbjct: 304 N 304


>gi|145611132|ref|XP_001410972.1| hypothetical protein [Magnaporthe oryzae 70-15]
 gi|145018454|gb|EDK02733.1| predicted protein [Magnaporthe oryzae 70-15]
          Length = 305

 Score = 57.4 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 57/143 (39%), Gaps = 12/143 (8%)

Query: 11  KRIGYAF--ANRSLLEKALTHSSISHSYQES------YERLEFLGDRILGLLISTLLFNH 62
           K I Y F  A+  L  +AL  ++I + Y  S       + L   GD +    +     N+
Sbjct: 70  KIINYHFDAAHVLLAIEALETTTIPYRYTNSKREMRTNQVLAIYGDVVSAAQLCEFWINN 129

Query: 63  FDSAK--EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI--QADV 118
             +     G  S     L+  +  ++V +   L + +       K+V S  T +   A  
Sbjct: 130 RPAHGLVPGNWSTLQMQLLGNQNLARVGKNAGLGTCMINGPIGNKEVVSKKTKMIRMATT 189

Query: 119 VESLIAALYLDGGIEVAGTFVDK 141
           VE+++ A++  GG       +++
Sbjct: 190 VEAILGAVHKAGGPRALRAVMER 212


>gi|145489315|ref|XP_001430660.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|74830695|emb|CAI39097.1| Dicer-like ribonuclease with mutated helicase and Rnase III domains
            [Paramecium tetraurelia]
 gi|124397759|emb|CAK63262.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1596

 Score = 57.4 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 79/245 (32%), Gaps = 72/245 (29%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSI--------------------------------- 32
            +S+LE +I Y F +  LL +A+T  S                                  
Sbjct: 1295 FSSLEYKIKYQFKHFELLFQAMTDISFKFVINNKLKFKYYEQFQKKEEFQGMIQEQQWIE 1354

Query: 33   --------SHSYQESYER--LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
                    + + Q +YE   L  LG  +   L   +L  +  +     + +    L    
Sbjct: 1355 FKSQFECMNETDQNNYENSLLAMLGKALWNYLTIKILNEN--NLDCFAIKIVGKILSKTP 1412

Query: 83   TCSQVARELDLASFIR---------VSSDLRKD--------VCSFMTSIQADVVE----S 121
              + +A +L L  ++          ++S++ K         +     SI    +E    +
Sbjct: 1413 FLAYLAIQLGLQQYLNSIYSTILLNLASEVEKCKDSSLAFKIGKIQKSIHTQCLETAFFA 1472

Query: 122  LIAALYLDGG------IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
            L+ A+YLD        ++ A   +D    Q+       +R  K +  +W  +  G    +
Sbjct: 1473 LVGAIYLDSNCSSNIVMQWATLILDNVQVQQFYSPDFIKRQPKYQFYQWYQSNIGNPFNF 1532

Query: 176  KVTFR 180
             +   
Sbjct: 1533 NLIKI 1537


>gi|281363621|ref|NP_001163185.1| staufen, isoform C [Drosophila melanogaster]
 gi|33636635|gb|AAQ23615.1| LD13210p [Drosophila melanogaster]
 gi|272432536|gb|ACZ94457.1| staufen, isoform C [Drosophila melanogaster]
          Length = 1025

 Score = 57.4 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 4/80 (5%)

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVVEISGLAPA 201
           K + +       +  T+L +    +    P +++  ++G +   R  F + V  SG + A
Sbjct: 700 KDKLIDMDDAD-NPITKLIQLQQTRKEKEPIFELIAKNGNETARRREFVMEVSASG-STA 757

Query: 202 QGMDCSKRAAEQVAAAEVLK 221
           +G   SK+ A++ AA  + +
Sbjct: 758 RGTGNSKKLAKRNAAQALFE 777



 Score = 54.7 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y++T   GP H   FTV + +             + A+ +AA++ ++
Sbjct: 328 QYRLTEERGPAHCKTFTVTLMLGDEEY-SADGFKIKKAQHLAASKAIE 374



 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           K  +T  +KV    GP H   F     + G    +G    K+ +++ AA ++L
Sbjct: 589 KRNMTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKVSKKRAAEKML 640


>gi|47227654|emb|CAG09651.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 850

 Score = 57.4 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +Y++  +SGP H P FT+ V++ G    Q    SKR A+   A + L+  G
Sbjct: 525 QYRLLSQSGPVHAPVFTMSVDVQGNTY-QATGNSKRTAKLQVALKALQALG 574



 Score = 40.8 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206
           K  + E    + G+  +Y++   SG  +D RF + VE+      +G   
Sbjct: 663 KNPVMELNEKRRGL--KYELISESGSSYDKRFIIEVEVD-KQVFRGTGP 708


>gi|158506|gb|AAA73062.1| unnamed protein product [Drosophila melanogaster]
          Length = 1026

 Score = 57.4 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 4/80 (5%)

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVVEISGLAPA 201
           K + +       +  T+L +    +    P +++  ++G +   R  F + V  SG + A
Sbjct: 700 KDKLIDMDDAD-NPITKLIQLQQTRKEKEPIFELIAKNGNETARRREFVMEVSASG-STA 757

Query: 202 QGMDCSKRAAEQVAAAEVLK 221
           +G   SK+ A++ AA  + +
Sbjct: 758 RGTGNSKKLAKRNAAQALFE 777



 Score = 54.7 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y++T   GP H   FTV + +             + A+ +AA++ ++
Sbjct: 328 QYRLTEERGPAHCKTFTVTLMLGDEEY-SADGFKIKKAQHLAASKAIE 374



 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           K  +T  +KV    GP H   F     + G    +G    K+ +++ AA ++L
Sbjct: 589 KRNMTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKVSKKRAAEKML 640


>gi|17136520|ref|NP_476751.1| staufen, isoform A [Drosophila melanogaster]
 gi|71153175|sp|P25159|STAU_DROME RecName: Full=Maternal effect protein staufen
 gi|7302672|gb|AAF57752.1| staufen, isoform A [Drosophila melanogaster]
          Length = 1026

 Score = 57.4 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 4/80 (5%)

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVVEISGLAPA 201
           K + +       +  T+L +    +    P +++  ++G +   R  F + V  SG + A
Sbjct: 700 KDKLIDMDDAD-NPITKLIQLQQTRKEKEPIFELIAKNGNETARRREFVMEVSASG-STA 757

Query: 202 QGMDCSKRAAEQVAAAEVLK 221
           +G   SK+ A++ AA  + +
Sbjct: 758 RGTGNSKKLAKRNAAQALFE 777



 Score = 54.7 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y++T   GP H   FTV + +             + A+ +AA++ ++
Sbjct: 328 QYRLTEERGPAHCKTFTVTLMLGDEEY-SADGFKIKKAQHLAASKAIE 374



 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           K  +T  +KV    GP H   F     + G    +G    K+ +++ AA ++L
Sbjct: 589 KRNMTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKVSKKRAAEKML 640


>gi|170083875|ref|XP_001873161.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164650713|gb|EDR14953.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 193

 Score = 57.4 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 42/116 (36%), Gaps = 13/116 (11%)

Query: 30  SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAR 89
           SSI ++  E  +RLEF+GD ++   +S  L+        G  +   ++L +  T + +  
Sbjct: 41  SSICNNSAER-DRLEFVGDALMSGTVSEELYRIRIQGSPGFYTNARSALTANSTFAHLMH 99

Query: 90  ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145
            L                         D  E++IAA   +   E    +    + Q
Sbjct: 100 RLGHHDM------------RDKVKPAGDAFETIIAAYRNETSAEAFQQWFRDNFTQ 143


>gi|162463399|ref|NP_001106055.1| ribonuclease III domain protein1 [Zea mays]
 gi|149980667|gb|ABR53724.1| chloroplast ribonuclease III domain protein [Zea mays]
 gi|194704042|gb|ACF86105.1| unknown [Zea mays]
 gi|195647406|gb|ACG43171.1| RNA binding protein [Zea mays]
 gi|223950477|gb|ACN29322.1| unknown [Zea mays]
          Length = 525

 Score = 57.4 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 43/128 (33%), Gaps = 6/128 (4%)

Query: 22  LLEKALTH------SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
           L   A  H       +     +  + RL FLG  +L L         +     G +  R 
Sbjct: 156 LFYLAFQHLDPSSERTRMRHVRNGHSRLWFLGQYVLELAFCEFFLQRYPRESPGPMRERV 215

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
            +L+  +   +  +   L + +    DL K +          V  ++  A+YL  G+   
Sbjct: 216 FALIGKKVLPRWLKAASLHNLVFPYDDLDKMIRKDREPPSKAVFWAIFGAIYLCFGMPEV 275

Query: 136 GTFVDKYW 143
              + + +
Sbjct: 276 YRVLFEAF 283



 Score = 51.2 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 48/145 (33%), Gaps = 10/145 (6%)

Query: 18  ANRSL---LEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            N  L   L+    H S       +  YERLE++G +I  L+++  L      A    L+
Sbjct: 382 RNIELGLGLQLCFLHPSKHKFEHPRFCYERLEYVGQKIQDLVMAERLLMKHLDAPGRWLA 441

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSS----DLRKDVCSFMTSIQADVVESLIAALYL 128
            +    +  + C +  R+  L  +I            +      S    V ++L    Y 
Sbjct: 442 EKHRRTLMNKYCGRYLRDKHLQHYIIYGETVQDRFEHNRRLRNPST-TSVQQALHGLAYC 500

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKF 153
             G       + + +    ++    
Sbjct: 501 VYGKPDVRRLMFEVFDFEQVQPKAV 525


>gi|49257953|gb|AAH74107.1| Unknown (protein for IMAGE:6866473) [Xenopus laevis]
          Length = 477

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+      +    SK+ A+   A +VL+  G+ T
Sbjct: 412 QLKPGLQYKLISQTGPVHAPVFTMSVEVDDKT-FEASGPSKKTAKLHVAVKVLQDMGLPT 470


>gi|255569488|ref|XP_002525711.1| hypothetical protein RCOM_1321840 [Ricinus communis]
 gi|223535011|gb|EEF36694.1| hypothetical protein RCOM_1321840 [Ricinus communis]
          Length = 162

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197
            KT+LQE  H K    PEY  T   G DH+P F   V ++G
Sbjct: 2   YKTKLQELCHQKTWSLPEYSTTKV-GQDHNPIFHATVIVNG 41



 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 1/66 (1%)

Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
           A      ++   +L     +   K  LQ +A  +    P Y    R GP H   F   V 
Sbjct: 60  AAKLAFDHFSSVSLPPDVQQHLYKNLLQSYAQKRGLPLPMYSC-ERQGPPHASLFKCKVT 118

Query: 195 ISGLAP 200
           I G + 
Sbjct: 119 IDGKSY 124


>gi|157818491|ref|NP_001099651.1| tRNA-dihydrouridine synthase 2-like [Rattus norvegicus]
 gi|149038072|gb|EDL92432.1| dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae)
           (predicted), isoform CRA_a [Rattus norvegicus]
 gi|165971659|gb|AAI58729.1| Dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae)
           [Rattus norvegicus]
          Length = 493

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 55/142 (38%), Gaps = 16/142 (11%)

Query: 86  QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI-EVAGTFVDKYWK 144
           ++     L +F     D  +++ +    + A   E++        GI ++A  F  + + 
Sbjct: 309 EICEAFGLGTF---YEDTIRELDARRADLLAKTPEAVEEPAEDTSGIIKMAIRFDRRAYP 365

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQG 203
            +           KT L EW   +    P Y+   R     D  F  VV ++     +  
Sbjct: 366 PQIT--------PKTCLLEWCRREKLPQPVYETVQR---PIDRMFCSVVTVAEQKYQSTL 414

Query: 204 MDCSKRAAEQVAAAEVLKREGI 225
            D SK+ AEQ AA   L+ +G+
Sbjct: 415 WDKSKKLAEQTAAIVCLRSQGL 436


>gi|327276491|ref|XP_003223003.1| PREDICTED: tRNA-dihydrouridine synthase 2-like [Anolis
           carolinensis]
          Length = 488

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVA 215
            K  L EW        P Y+   R     D  F  VV ++    +    + SK+ AEQ A
Sbjct: 368 PKMHLLEWCRKGKLPQPVYETIER---PRDRLFCSVVTVAEQKYSSTLWEKSKKLAEQAA 424

Query: 216 AAEVLKREGI 225
           A   L+  G+
Sbjct: 425 AIACLRALGL 434


>gi|326915415|ref|XP_003204013.1| PREDICTED: interferon-induced, double-stranded RNA-activated
           protein kinase-like [Meleagris gallopavo]
          Length = 545

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 1/49 (2%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           ++L  +         +Y      GP HDP FTV V I       G   S
Sbjct: 7   SKLNSYCQRNKYKL-DYIDVDMRGPSHDPEFTVTVRIDNKEYGTGTGKS 54



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           D  + L +++  +     +Y    R+G  H P ++    ISG     G+  S
Sbjct: 99  DYVSLLNKYSQ-RTLQLVDYNNINRTGDAHAPMYSCSCTISGHVYGNGIGNS 149


>gi|224157911|ref|XP_002199819.1| PREDICTED: similar to interleukin enhancer binding factor 3, 90kDa,
           partial [Taeniopygia guttata]
          Length = 755

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VEI G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 408 QLKPGLQYKLVSQTGPVHAPIFTMSVEIDG-STFEASGPSKKTAKLHVAVKVLQDMGLPT 466



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 523 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 574


>gi|312067398|ref|XP_003136724.1| double-stranded RNA binding domain-containing protein family
           protein [Loa loa]
 gi|307768110|gb|EFO27344.1| double-stranded RNA binding domain-containing protein family
           protein [Loa loa]
          Length = 445

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 51/156 (32%), Gaps = 10/156 (6%)

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM--TSIQADVVESLIAALY-LDGGIE 133
           + V        A   +L     +     K +   M   ++   ++E    + + L    E
Sbjct: 110 AFVEMPNL--FAIRCELYGIHTIGHGRTKKIAKQMAAKNMLKKMIEKESFSDFELGKTKE 167

Query: 134 VAGTFVDKY---WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
            A   ++     ++ R         +   ++ E        +  Y+     GP +   F 
Sbjct: 168 EALASLENLTIDFQNRGSGDDSVAENWVGKVNERCQKLKLSSVNYE-IDEEGPPNHRIFI 226

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
              ++ G     G   +K+ A+ +AA ++  +   W
Sbjct: 227 ATCKM-GKVHVVGHGKTKKIAKTLAAQKMYAQLENW 261


>gi|195109694|ref|XP_001999418.1| GI24499 [Drosophila mojavensis]
 gi|193916012|gb|EDW14879.1| GI24499 [Drosophila mojavensis]
          Length = 321

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 77/231 (33%), Gaps = 29/231 (12%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQE---------------SYERLEFLGDRILGLLI 55
           KR+   F    +L+ A T  + ++  QE                 ++L+  G  I    +
Sbjct: 72  KRLNEEFQ-LPILQIAFTQQAYANQEQERQRKLGIAEADLQISDNKQLKAKGAHITRAYV 130

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
              L +              + L+S ET + V+  L     I              +   
Sbjct: 131 EAYLQHSLPKLPPAGQKAITSYLLSTETLAHVSMHLGTKELIF------STEYPPNSETL 184

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYW-----KQRALKSGKFRRDAKTELQEWAHAKFG 170
           A+ ++++I AL    G++ A  FV  +      ++  L      +     L E  + +  
Sbjct: 185 AETLQAIIGALADSSGVDRAFLFVRDFICTQLNQKDLLDIWTPEQ-PLELLSEICNQRKL 243

Query: 171 VTPEYKVTFRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             PE ++    G +     F V +        +G   + + A + AA   L
Sbjct: 244 GEPEPRLLGDCGKNTLLAAFQVGIYADRQLLGKGFGENVQTATETAAICAL 294


>gi|115976356|ref|XP_001183590.1| PREDICTED: similar to dsRNA adenosine deaminase [Strongylocentrotus
            purpuratus]
          Length = 1733

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 151  GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
                ++  + L E+A A+        +  +SGP H+PRF     + G         SK+ 
Sbjct: 1244 AAINKNPVSALTEYAQARHLP-VSIDLLQQSGPPHNPRFVFAACVGGRRFQHVTSRSKKD 1302

Query: 211  AEQVAAAEVLK 221
              + AA   L+
Sbjct: 1303 GRREAADMALR 1313


>gi|115722979|ref|XP_789034.2| PREDICTED: similar to dsRNA adenosine deaminase, partial
           [Strongylocentrotus purpuratus]
          Length = 1069

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
               ++  + L E+A A+        +  +SGP H+PRF     + G         SK+ 
Sbjct: 580 AAINKNPVSALTEYAQARHLP-VSIDLLQQSGPPHNPRFVFAACVGGRRFQHVTSRSKKD 638

Query: 211 AEQVAAAEVLK 221
             + AA   L+
Sbjct: 639 GRREAADMALR 649


>gi|157107677|ref|XP_001649886.1| ATP-dependent RNA helicase [Aedes aegypti]
 gi|108879498|gb|EAT43723.1| ATP-dependent RNA helicase [Aedes aegypti]
          Length = 1131

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQ 213
           +D K+   EW   K   TP ++V   +GP +  RF   V +   A    G   +K+ AE+
Sbjct: 1   KDIKSFFYEWCQ-KGSFTPSFEV-RPTGPKNRQRFLCEVRVPSEAYVGAGNSTNKKDAER 58

Query: 214 VAAAE 218
            AA +
Sbjct: 59  NAARD 63



 Score = 42.4 bits (99), Expect = 0.047,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-----AQGMDCSKRA 210
           +AK +L +W      + P+YK T   GPDH   F   + I           +    +K++
Sbjct: 170 NAKAKLNQWLQ-MNRMNPDYKYTAV-GPDHARSFMAEMTIYVKQLSRNITGRESGSNKQS 227

Query: 211 AEQVAAAEVLKRE 223
           A +  A  ++++ 
Sbjct: 228 ASKSCALSLVRQL 240


>gi|317030485|ref|XP_001392667.2| 60S ribosomal protein L3 [Aspergillus niger CBS 513.88]
          Length = 406

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 39/113 (34%), Gaps = 11/113 (9%)

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR------RDAKTELQEWAHAKF 169
           A  V +++ A+YL  G   A  F ++++  R L            RD    L      + 
Sbjct: 262 ATFVRAVMGAIYLHAGRPAAKRFFEQHFLSRHLNISDLFNFSQPARD----LARLCAREN 317

Query: 170 GVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              P  ++   +G     P F V +        +G   S   A   AA   LK
Sbjct: 318 FEQPVARIISETGRKSRHPVFVVGIYSGQDKLGEGAGASLLEARSRAAVAALK 370



 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 3/96 (3%)

Query: 2   SALRYSTLEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLL 59
            + + + L  R+ Y  +   L  L ++L  +S   + + + E L  LG  +L    S  L
Sbjct: 81  ESAKLAALHARL-YLPSRLPLETLARSLVDASADPNPKFNNESLATLGHDLLTHYTSEYL 139

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLAS 95
              +       +     + V  +T + +ARE  + S
Sbjct: 140 ICTYPRLPLTVIFAAMYAYVGPKTLAAMAREWGVES 175


>gi|194880953|ref|XP_001974617.1| GG20993 [Drosophila erecta]
 gi|190657804|gb|EDV55017.1| GG20993 [Drosophila erecta]
          Length = 1034

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 4/80 (5%)

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVVEISGLAPA 201
           K + +       +  T+L +    +    P +++  ++G +   R  F + V  SG + A
Sbjct: 701 KDKLIDLDDAD-NPITKLIQLQQTRKEKEPIFELIAKNGNETARRREFVMEVSASG-STA 758

Query: 202 QGMDCSKRAAEQVAAAEVLK 221
           +G   SK+ A++ AA  + +
Sbjct: 759 RGTGNSKKLAKRNAAQALFE 778



 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y++T   GP H   FTV + +             + A+ +AA++ ++
Sbjct: 329 QYRLTGERGPAHCKTFTVTLMLGDEEY-SADGFKIKKAQHLAASKAIE 375



 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           K  +T  +KV    GP H   F     + G    +G    K+ +++ AA ++L
Sbjct: 590 KRNMTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKVSKKRAAEKML 641


>gi|332853012|ref|XP_001166193.2| PREDICTED: interleukin enhancer-binding factor 3 isoform 3 [Pan
           troglodytes]
          Length = 690

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 521 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 572


>gi|332112807|gb|AEE02020.1| NF110b [Homo sapiens]
          Length = 898

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 525 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 576


>gi|332112805|gb|AEE02019.1| NF90b [Homo sapiens]
          Length = 706

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 525 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 576


>gi|332112803|gb|AEE02018.1| NF90a [Homo sapiens]
          Length = 702

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 521 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 572


>gi|332253325|ref|XP_003275796.1| PREDICTED: LOW QUALITY PROTEIN: interleukin enhancer-binding factor
           3-like [Nomascus leucogenys]
          Length = 898

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 525 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 576


>gi|311248674|ref|XP_003123290.1| PREDICTED: interleukin enhancer-binding factor 3-like [Sus scrofa]
          Length = 856

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 523 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 574


>gi|301772006|ref|XP_002921413.1| PREDICTED: interleukin enhancer-binding factor 3-like [Ailuropoda
           melanoleuca]
          Length = 897

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 408 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 466



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 522 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 573


>gi|297703573|ref|XP_002828712.1| PREDICTED: interleukin enhancer-binding factor 3-like isoform 2
           [Pongo abelii]
          Length = 669

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 378 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 436



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 488 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 539


>gi|297703571|ref|XP_002828711.1| PREDICTED: interleukin enhancer-binding factor 3-like isoform 1
           [Pongo abelii]
          Length = 861

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 378 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 436



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 488 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 539


>gi|297276121|ref|XP_002801113.1| PREDICTED: interleukin enhancer-binding factor 3-like isoform 3
           [Macaca mulatta]
          Length = 764

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 521 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 572


>gi|297276119|ref|XP_001102411.2| PREDICTED: interleukin enhancer-binding factor 3-like isoform 1
           [Macaca mulatta]
          Length = 690

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 521 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 572


>gi|297276117|ref|XP_002801112.1| PREDICTED: interleukin enhancer-binding factor 3-like isoform 2
           [Macaca mulatta]
          Length = 706

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 525 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 576


>gi|296232891|ref|XP_002807844.1| PREDICTED: LOW QUALITY PROTEIN: interleukin enhancer-binding factor
           3-like [Callithrix jacchus]
          Length = 895

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 521 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 572


>gi|291414148|ref|XP_002723321.1| PREDICTED: interleukin enhancer binding factor 3 [Oryctolagus
           cuniculus]
          Length = 896

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 408 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 466



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 522 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 573


>gi|281337392|gb|EFB12976.1| hypothetical protein PANDA_010307 [Ailuropoda melanoleuca]
          Length = 896

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203
              A +     +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG
Sbjct: 512 DPTAEQGPILTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQG 568

Query: 204 MDCS 207
              +
Sbjct: 569 AGSN 572


>gi|194376558|dbj|BAG57425.1| unnamed protein product [Homo sapiens]
          Length = 506

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 215 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 273



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 325 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 376


>gi|194375538|dbj|BAG56714.1| unnamed protein product [Homo sapiens]
          Length = 288

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 9   QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 67



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 119 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 170


>gi|194213163|ref|XP_001491016.2| PREDICTED: interleukin enhancer binding factor 3, 90kDa [Equus
           caballus]
          Length = 702

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 521 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 572


>gi|158255846|dbj|BAF83894.1| unnamed protein product [Homo sapiens]
          Length = 702

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 521 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 572


>gi|119604539|gb|EAW84133.1| interleukin enhancer binding factor 3, 90kDa, isoform CRA_c [Homo
           sapiens]
          Length = 858

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 525 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 576


>gi|119604543|gb|EAW84137.1| interleukin enhancer binding factor 3, 90kDa, isoform CRA_f [Homo
           sapiens]
          Length = 589

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 146 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 204



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 256 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 307


>gi|119604541|gb|EAW84135.1| interleukin enhancer binding factor 3, 90kDa, isoform CRA_e [Homo
           sapiens]
          Length = 765

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 521 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 572


>gi|212549553|ref|NP_060090.2| interleukin enhancer-binding factor 3 isoform d [Homo sapiens]
 gi|119604538|gb|EAW84132.1| interleukin enhancer binding factor 3, 90kDa, isoform CRA_b [Homo
           sapiens]
 gi|261859362|dbj|BAI46203.1| interleukin enhancer binding factor 3, 90kDa [synthetic construct]
          Length = 898

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 525 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 576


>gi|114675403|ref|XP_001166543.1| PREDICTED: interleukin enhancer binding factor 3 isoform 9 [Pan
           troglodytes]
          Length = 896

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 404 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 462



 Score = 48.1 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 4/73 (5%)

Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
           A   V  +W  +        +  K  + E    + G+  +Y++   +G  HD RF + VE
Sbjct: 506 ATAEVSTWWNVKQQGP-ILTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVE 562

Query: 195 ISGLAPAQGMDCS 207
           + G    QG   +
Sbjct: 563 VDGQK-FQGAGSN 574


>gi|114675419|ref|XP_512380.2| PREDICTED: interleukin enhancer binding factor 3 isoform 12 [Pan
           troglodytes]
          Length = 895

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 408 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 466



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 522 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 573


>gi|114675409|ref|XP_001166345.1| PREDICTED: interleukin enhancer-binding factor 3 isoform 5 [Pan
           troglodytes]
          Length = 706

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 525 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 576


>gi|114675405|ref|XP_001166048.1| PREDICTED: interleukin enhancer binding factor 3 isoform 1 [Pan
           troglodytes]
          Length = 860

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 525 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 576


>gi|114675415|ref|XP_001166283.1| PREDICTED: interleukin enhancer binding factor 3 isoform 4 [Pan
           troglodytes]
          Length = 698

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 525 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 576


>gi|114675397|ref|XP_001166471.1| PREDICTED: interleukin enhancer binding factor 3 isoform 7 [Pan
           troglodytes]
 gi|114675399|ref|XP_001166503.1| PREDICTED: interleukin enhancer binding factor 3 isoform 8 [Pan
           troglodytes]
 gi|114675401|ref|XP_001166614.1| PREDICTED: interleukin enhancer-binding factor 3 isoform 11 [Pan
           troglodytes]
          Length = 898

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 525 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 576


>gi|114675407|ref|XP_001166580.1| PREDICTED: interleukin enhancer binding factor 3 isoform 10 [Pan
           troglodytes]
          Length = 777

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 525 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 576


>gi|114675413|ref|XP_001166155.1| PREDICTED: interleukin enhancer binding factor 3 isoform 2 [Pan
           troglodytes]
          Length = 725

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 525 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 576


>gi|114675417|ref|XP_001166386.1| PREDICTED: interleukin enhancer binding factor 3 isoform 6 [Pan
           troglodytes]
          Length = 764

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 521 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 572


>gi|5762315|gb|AAD51099.1| nuclear factor associated with dsRNA NFAR-2 [Homo sapiens]
          Length = 894

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 521 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 572


>gi|212549555|ref|NP_001131145.1| interleukin enhancer-binding factor 3 isoform e [Homo sapiens]
 gi|40674401|gb|AAH64836.1| ILF3 protein [Homo sapiens]
 gi|158256666|dbj|BAF84306.1| unnamed protein product [Homo sapiens]
          Length = 706

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 525 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 576


>gi|5006602|gb|AAD37575.1|AF141870_1 translational control protein 80 [Homo sapiens]
          Length = 764

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 521 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 572


>gi|12746295|gb|AAK07424.1| 90 kDa NFAR protein [Homo sapiens]
          Length = 702

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 521 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 572


>gi|9081982|gb|AAF82686.1| dsRNA binding protein NFAR-1/DRB76 [Homo sapiens]
          Length = 515

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 224 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 282



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 334 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 385


>gi|9081981|gb|AAF82685.1|AF202445_1 dsRNA binding protein NFAR-2/MPP4 [Homo sapiens]
          Length = 709

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 224 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 282



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 334 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 385


>gi|4929371|gb|AAD33966.1|AF147209_1 double-stranded RNA-binding nuclear protein DRBP76 [Homo sapiens]
          Length = 702

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 521 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 572


>gi|12746296|gb|AAK07425.1| 110 kDa NFAR protein [Homo sapiens]
          Length = 894

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 521 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 572


>gi|9081983|gb|AAF82687.1| dsRNA binding protein TCP-80 isoform [Homo sapiens]
          Length = 576

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 224 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 282



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 334 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 385


>gi|5762313|gb|AAD51098.1| nuclear factor associated with dsRNA NFAR-1 [Homo sapiens]
          Length = 702

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 521 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 572


>gi|73986772|ref|XP_854061.1| PREDICTED: similar to interleukin enhancer binding factor 3 isoform
           a isoform 2 [Canis familiaris]
          Length = 896

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203
              A +     +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG
Sbjct: 512 DPTAEQGPILTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQG 568

Query: 204 MDCS 207
              +
Sbjct: 569 AGSN 572


>gi|73986770|ref|XP_868155.1| PREDICTED: similar to interleukin enhancer binding factor 3 isoform
           a isoform 12 [Canis familiaris]
          Length = 896

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 521 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 572


>gi|73986760|ref|XP_868135.1| PREDICTED: similar to interleukin enhancer binding factor 3 isoform
           a isoform 7 [Canis familiaris]
          Length = 888

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 525 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 576


>gi|73986756|ref|XP_868127.1| PREDICTED: similar to interleukin enhancer binding factor 3 isoform
           a isoform 5 [Canis familiaris]
          Length = 631

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 146 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 204



 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203
              A +     +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG
Sbjct: 247 DPTAEQGPILTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQG 303

Query: 204 MDCS 207
              +
Sbjct: 304 AGSN 307


>gi|73986762|ref|XP_868138.1| PREDICTED: similar to interleukin enhancer binding factor 3 isoform
           a isoform 8 [Canis familiaris]
          Length = 900

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 525 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 576


>gi|73986758|ref|XP_868130.1| PREDICTED: similar to interleukin enhancer binding factor 3 isoform
           a isoform 6 [Canis familiaris]
          Length = 873

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 384 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 442



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 498 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 549


>gi|73986766|ref|XP_868145.1| PREDICTED: similar to interleukin enhancer binding factor 3 isoform
           a isoform 10 [Canis familiaris]
          Length = 845

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 525 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 576


>gi|73986774|ref|XP_542066.2| PREDICTED: similar to interleukin enhancer binding factor 3 isoform
           a isoform 1 [Canis familiaris]
          Length = 900

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 525 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 576


>gi|73986752|ref|XP_868121.1| PREDICTED: similar to interleukin enhancer binding factor 3 isoform
           b isoform 3 [Canis familiaris]
          Length = 702

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203
              A +     +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG
Sbjct: 512 DPTAEQGPILTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQG 568

Query: 204 MDCS 207
              +
Sbjct: 569 AGSN 572


>gi|73986764|ref|XP_868141.1| PREDICTED: similar to interleukin enhancer binding factor 3 isoform
           a isoform 9 [Canis familiaris]
          Length = 874

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 389 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 447



 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203
              A +     +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG
Sbjct: 490 DPTAEQGPILTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQG 546

Query: 204 MDCS 207
              +
Sbjct: 547 AGSN 550


>gi|73986768|ref|XP_868151.1| PREDICTED: similar to interleukin enhancer binding factor 3 isoform
           a isoform 11 [Canis familiaris]
          Length = 876

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 391 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 449



 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203
              A +     +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG
Sbjct: 492 DPTAEQGPILTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQG 548

Query: 204 MDCS 207
              +
Sbjct: 549 AGSN 552


>gi|24234753|ref|NP_004507.2| interleukin enhancer-binding factor 3 isoform b [Homo sapiens]
 gi|9714268|emb|CAC01405.1| double-stranded RNA binding nuclear protein DRBP76 [Homo sapiens]
 gi|119604537|gb|EAW84131.1| interleukin enhancer binding factor 3, 90kDa, isoform CRA_a [Homo
           sapiens]
          Length = 702

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 521 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 572


>gi|24234750|ref|NP_036350.2| interleukin enhancer-binding factor 3 isoform a [Homo sapiens]
 gi|62512150|sp|Q12906|ILF3_HUMAN RecName: Full=Interleukin enhancer-binding factor 3; AltName:
           Full=Double-stranded RNA-binding protein 76;
           Short=DRBP76; AltName: Full=M-phase phosphoprotein 4;
           Short=MPP4; AltName: Full=Nuclear factor associated with
           dsRNA; Short=NFAR; AltName: Full=Nuclear factor of
           activated T-cells 90 kDa; Short=NF-AT-90; AltName:
           Full=Translational control protein 80; Short=TCP80
 gi|119604540|gb|EAW84134.1| interleukin enhancer binding factor 3, 90kDa, isoform CRA_d [Homo
           sapiens]
 gi|119604542|gb|EAW84136.1| interleukin enhancer binding factor 3, 90kDa, isoform CRA_d [Homo
           sapiens]
          Length = 894

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 521 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 572


>gi|9714266|emb|CAC01404.1| DRBP76 alpha [Homo sapiens]
          Length = 564

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 277 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 335



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 391 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 442


>gi|24234756|ref|NP_703194.1| interleukin enhancer-binding factor 3 isoform c [Homo sapiens]
 gi|9714270|emb|CAC01406.1| double-stranded RNA binding nuclear protein DRBP76 delta [Homo
           sapiens]
          Length = 690

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 521 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 572


>gi|532315|gb|AAA20994.1| NF90 protein [Homo sapiens]
          Length = 671

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 412 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 470



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 526 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 577


>gi|1770458|emb|CAA66918.1| M-phase phosphoprotein 4 [Homo sapiens]
          Length = 611

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 521 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 572


>gi|9714272|emb|CAC01407.1| double stranded RNA binding nuclear protein, ILF3 [Homo sapiens]
          Length = 591

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 108 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNS-FEASGPSKKTAKLHVAVKVLQDMGLPT 166



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 218 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 269


>gi|149020494|gb|EDL78299.1| interleukin enhancer binding factor 3, isoform CRA_a [Rattus
           norvegicus]
 gi|149020495|gb|EDL78300.1| interleukin enhancer binding factor 3, isoform CRA_a [Rattus
           norvegicus]
 gi|149020496|gb|EDL78301.1| interleukin enhancer binding factor 3, isoform CRA_a [Rattus
           norvegicus]
          Length = 910

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 424 QLKPGLQYKLISQTGPVHAPIFTMSVEVDG-STFEASGPSKKTAKLHVAVKVLQDMGLPT 482



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 534 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 585


>gi|16758150|ref|NP_445864.1| interleukin enhancer-binding factor 3 [Rattus norvegicus]
 gi|6911241|gb|AAF31446.1|AF220102_1 interleukin enhancer binding factor 3 [Rattus norvegicus]
          Length = 910

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 424 QLKPGLQYKLISQTGPVHAPIFTMSVEVDG-STFEASGPSKKTAKLHVAVKVLQDMGLPT 482



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 534 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 585


>gi|62512127|sp|Q9JIL3|ILF3_RAT RecName: Full=Interleukin enhancer-binding factor 3
          Length = 897

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 411 QLKPGLQYKLISQTGPVHAPIFTMSVEVDG-STFEASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 521 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 572


>gi|149038073|gb|EDL92433.1| dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae)
           (predicted), isoform CRA_b [Rattus norvegicus]
          Length = 380

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 55/142 (38%), Gaps = 16/142 (11%)

Query: 86  QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI-EVAGTFVDKYWK 144
           ++     L +F     D  +++ +    + A   E++        GI ++A  F  + + 
Sbjct: 196 EICEAFGLGTF---YEDTIRELDARRADLLAKTPEAVEEPAEDTSGIIKMAIRFDRRAYP 252

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQG 203
            +           KT L EW   +    P Y+   R     D  F  VV ++     +  
Sbjct: 253 PQIT--------PKTCLLEWCRREKLPQPVYETVQR---PIDRMFCSVVTVAEQKYQSTL 301

Query: 204 MDCSKRAAEQVAAAEVLKREGI 225
            D SK+ AEQ AA   L+ +G+
Sbjct: 302 WDKSKKLAEQTAAIVCLRSQGL 323


>gi|71009980|ref|XP_758335.1| hypothetical protein UM02188.1 [Ustilago maydis 521]
 gi|46098077|gb|EAK83310.1| hypothetical protein UM02188.1 [Ustilago maydis 521]
          Length = 1255

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 49/140 (35%), Gaps = 32/140 (22%)

Query: 38   ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLA--- 94
            E +ERLE LGD I+ +    L +  +    EG L+   N        + + RE  LA   
Sbjct: 900  EDHERLEQLGDSIVNMSSRLLAYLSYPDVNEGSLTRLSNYPTQNNFLALLFRECGLAARR 959

Query: 95   ----SFIRVSSDL-------RKDVCSFMTSIQ----------------ADVVESLIAALY 127
                  +R            +K  C   T  +                AD+ E+  AA++
Sbjct: 960  DELCRELRGQHGHDDDASTTQKQACRKCTRTRQTDEEMAQLPLLIKRDADMFEAYAAAVF 1019

Query: 128  LDGG--IEVAGTFVDKYWKQ 145
            L  G    V   ++   ++ 
Sbjct: 1020 LSHGNDFNVVHNWLCHLFRP 1039


>gi|195487615|ref|XP_002091980.1| GE13936 [Drosophila yakuba]
 gi|194178081|gb|EDW91692.1| GE13936 [Drosophila yakuba]
          Length = 1037

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 4/80 (5%)

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVVEISGLAPA 201
           K + +       +  T+L +    +    P +++  ++G +   R  F + V  SG + A
Sbjct: 704 KDKLIDLDDAD-NPITKLIQLQQTRKEKEPIFELIAKNGNETARRREFVMEVSASG-STA 761

Query: 202 QGMDCSKRAAEQVAAAEVLK 221
           +G   SK+ A++ AA  + +
Sbjct: 762 RGTGNSKKLAKRNAAQALFE 781



 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y++T   GP H   FTV + +             + A+ +AA++ ++
Sbjct: 332 QYRLTGERGPAHCKTFTVTLMLGDEEY-SADGFKIKKAQHLAASKAIE 378



 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           K  +T  +KV    GP H   F     + G    +G    K+ +++ AA ++L
Sbjct: 593 KRNMTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKVSKKRAAEKML 644


>gi|321461921|gb|EFX72948.1| hypothetical protein DAPPUDRAFT_253785 [Daphnia pulex]
          Length = 222

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 8/67 (11%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV------AAAEVL 220
               +  + +     G  H   FT  V I    P +G   SK+ AE+       AA   L
Sbjct: 129 KHLKLGIKIETVKEEGSPHLLIFTARVVIGDQ-PFEGTGSSKKQAEEAESKKNEAAQAAL 187

Query: 221 KR-EGIW 226
           +  EG+W
Sbjct: 188 QSTEGVW 194



 Score = 38.9 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
              SGP H   +   V ++G       D +K+ A+   A  +L
Sbjct: 14  IAASGPPHARIYVASVTLNGKTY-SAKDTTKKTAKAKVARMIL 55


>gi|291241541|ref|XP_002740673.1| PREDICTED: RNA-specific adenosine deaminase B1-like [Saccoglossus
           kowalevskii]
          Length = 618

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 1/62 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              A       Y     SG  H+  +T+ V++   A  QG   +K   +  AA   L + 
Sbjct: 169 LLAAYNPGPIIYDTLSESGNGHEKMYTMAVKVGD-AVFQGTGANKHQGKMAAARAALSQL 227

Query: 224 GI 225
            +
Sbjct: 228 NV 229



 Score = 55.5 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             RSGP H P F + V++ G    +G  CS + A+ + A + LK
Sbjct: 88  VSRSGPPHAPVFVMGVKVDGQ-YFEGKGCSIKQAKHIVAKQALK 130


>gi|90660297|gb|ABD97411.1| double-stranded RNA binding protein [Cowpox virus]
          Length = 194

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 9/112 (8%)

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK-----TELQEWAHAKFGV 171
            + +S+  ++  D   E +     K +    +   K   D K     T + E+       
Sbjct: 79  AMADSMADSIIDDASREKSMREDHKSFDD--VIPAKKIIDWKDANPVTIINEYCQITKRD 136

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              +++    GP + P F   V+I G    +    SKR A+  AA   + + 
Sbjct: 137 W-SFRIESV-GPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 186


>gi|330417941|ref|NP_001193424.1| interleukin enhancer-binding factor 3 [Bos taurus]
          Length = 899

 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 411 QLKPGLQYKLISQTGPVHAPIFTMSVEVDG-SSFEASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 525 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 576


>gi|296485875|gb|DAA27990.1| interleukin enhancer binding factor 3, 90kDa [Bos taurus]
          Length = 954

 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 470 QLKPGLQYKLISQTGPVHAPIFTMSVEVDG-SSFEASGPSKKTAKLHVAVKVLQDMGLPT 528



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 580 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 631


>gi|170577089|ref|XP_001893878.1| hypothetical protein Bm1_12040 [Brugia malayi]
 gi|158599853|gb|EDP37292.1| hypothetical protein Bm1_12040 [Brugia malayi]
          Length = 381

 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 83/225 (36%), Gaps = 26/225 (11%)

Query: 18  ANRSLLEKALTHSSI-------------------SHSYQESYERLEFLGDRILGLLISTL 58
            ++ +L +ALT SS                    S+  +E  ++L  LG+ +L       
Sbjct: 59  TDKDVLIRALTDSSFYQRADIAEESSNAQPSKQESYEIKEHNKQLIQLGNELLWKSTCAY 118

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           L     +A E  +      L + E  + +A  L + + IR +     +V         + 
Sbjct: 119 LRYGLLNAPEELIISLALKLTADEQIANLATYLGINNLIRTAEFPPSNVS------LCNA 172

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVT 178
            ++LIAAL  +  I +    V        ++      +    L+ +  ++ G+  E ++ 
Sbjct: 173 FKALIAALPYERAIALIRNVVMAQLVDLDIEEVFPLAEPLAVLRCFMSSRSGMEIEPRLL 232

Query: 179 FRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             +G    +P F   +  +     QG   +   A  +AA + L R
Sbjct: 233 RSAGEISAEPVFIAGIYANKKLIGQGPGETISIAVDMAAMDALMR 277


>gi|47220271|emb|CAG03305.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 570

 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           ++    EY++T ++GP H+P FT+VV+++G    +    SK+AA+   A + 
Sbjct: 393 QYKRGLEYRLTSQTGPVHEPVFTMVVDVNGKTY-EATGPSKKAAKLNVATKA 443



 Score = 42.4 bits (99), Expect = 0.043,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             ++ K  + E    +   + +Y+++  +G  H+  F + VE+ G    +G   +
Sbjct: 500 LTKNGKNPVMELNEKRR--SLKYELSEETGGSHEKCFIMEVEVDGQK-FKGRGST 551


>gi|312374421|gb|EFR21981.1| hypothetical protein AND_15950 [Anopheles darlingi]
          Length = 306

 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
               +    PE+++    GP H P F     I  +   +G   +K+ A+Q+A  E++K
Sbjct: 119 ICVQRNFPLPEFELVRSYGPSHAPVFEFECRIRDIVR-RGSHSTKKGAKQIACQEMIK 175



 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 17/84 (20%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRS----GPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
             T LQE    K   TP Y+    S    GP +   F   V   G   A G+  SK+ ++
Sbjct: 13  PVTMLQEICMGKRVPTPTYQYLGESTSPLGP-NVKTFQHKVLTMGQE-AMGLGRSKQDSK 70

Query: 213 QVAAAEVL-----------KREGI 225
             AA +++           +REG+
Sbjct: 71  HEAAWQMIRLLLDIPPDEDEREGV 94


>gi|114052563|ref|NP_001039786.1| 39S ribosomal protein L44, mitochondrial precursor [Bos taurus]
 gi|116256057|sp|Q2KIS2|RM44_BOVIN RecName: Full=39S ribosomal protein L44, mitochondrial;
           Short=L44mt; Short=MRP-L44; Flags: Precursor
 gi|86827383|gb|AAI12532.1| Mitochondrial ribosomal protein L44 [Bos taurus]
 gi|296490187|gb|DAA32300.1| mitochondrial ribosomal protein L44 precursor [Bos taurus]
          Length = 332

 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 65/192 (33%), Gaps = 13/192 (6%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
           +  + L   G       ++    + F       +    + L   E    VAR L +   +
Sbjct: 120 KDNQELSEQGTSFSQTCLTQFFEDAFPDLPTEGVKSLVDYLTGEEVVCHVARNLAVEQ-L 178

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-- 155
            +S+D          ++      ++I AL    G E    F+  +   +      F    
Sbjct: 179 TLSADFPVP-----PAVLRQTFFAVIGALLHSSGPERTSLFIRDFLITQMTGKELFEIWK 233

Query: 156 --DAKTEL-QEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAA 211
             +    L QE    +    PE ++T +SG     P + V +       A+G   +   A
Sbjct: 234 IINPMGLLVQE-LKKRNISVPESRLTRQSGSTTALPVYFVGLYCDKKLIAEGPGETVLVA 292

Query: 212 EQVAAAEVLKRE 223
           E+ AA   L++ 
Sbjct: 293 EEEAARVALRKL 304


>gi|34978642|gb|AAQ83572.1| VP11 [Liao ning virus]
          Length = 198

 Score = 56.6 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           QE+A       P Y+     GP H+  FT+V         +G+  SK+ A  +AA +++
Sbjct: 15  QEYAIKLSESAPSYEDVGFEGPPHNRSFTIVATFRDKKY-EGIGPSKKVARSIAANKII 72


>gi|322695413|gb|EFY87222.1| 60S ribosomal protein L3 [Metarhizium acridum CQMa 102]
          Length = 392

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 72/259 (27%), Gaps = 60/259 (23%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA---------------- 66
           L +AL   S   +   +   L FLG  I+   +   L   +                   
Sbjct: 98  LARALITPSADANGSFNNANLAFLGSTIINYHVLEYLVCKWPRLPMAILYEALRAFSGQE 157

Query: 67  ------------------------------KEGELSVRFNSLVSAETCSQVARELDLASF 96
                                            +L  R    V +E     +    ++S 
Sbjct: 158 SLQQVARRWGVEAAAAPGEEVDAGLLQWRADGEQLVNRRWGYVRSEVEKGSSYRRGMSSR 217

Query: 97  IRV-------SSDLRKDVCSFMTSIQADVV----ESLIAALYLDGGIEVAGTFVDKYWKQ 145
           + +        S         + S+Q +      ++++ ++Y   G E A +FV  +   
Sbjct: 218 VVLDDVFGDALSKPEIAGRQGVDSLQNEAFASFVQAVVGSIYAHCGREAAKSFVTSHILS 277

Query: 146 RALKSGKFRRD--AKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQ 202
           R        +      EL      +   +P  ++   +G     P + V +        +
Sbjct: 278 RHFDPSVLFQFQLPTRELAMLCAREGFESPVARLESETGRLSRTPVYVVGIYSGKEKLGE 337

Query: 203 GMDCSKRAAEQVAAAEVLK 221
           G   S   A + A+   LK
Sbjct: 338 GAGPSLDIARRKASMNALK 356


>gi|94486111|gb|ABF25216.1| double-stranded RNA binding protein [Variola virus]
 gi|94486314|gb|ABF25418.1| double-stranded RNA binding protein [Variola virus]
 gi|94486517|gb|ABF25620.1| double-stranded RNA binding protein [Variola virus]
 gi|94486719|gb|ABF25821.1| double-stranded RNA binding protein [Variola virus]
 gi|94487125|gb|ABF26225.1| double-stranded RNA binding protein [Variola virus]
 gi|94490151|gb|ABF29236.1| double-stranded RNA binding protein [Variola virus]
 gi|109724086|gb|ABG43212.1| double-stranded RNA binding protein [Variola virus]
 gi|109725104|gb|ABG44225.1| double-stranded RNA binding protein [Variola virus]
 gi|109725309|gb|ABG44429.1| double-stranded RNA binding protein [Variola virus]
 gi|109725512|gb|ABG44631.1| double-stranded RNA binding protein [Variola virus]
 gi|109725716|gb|ABG44834.1| double-stranded RNA binding protein [Variola virus]
 gi|109725919|gb|ABG45036.1| double-stranded RNA binding protein [Variola virus]
 gi|109726529|gb|ABG45643.1| double-stranded RNA binding protein [Variola virus]
          Length = 190

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 9/108 (8%)

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK-----TELQEWAHAKFGVTPEY 175
           ++  A+  D   E +     K +    +   K   D K     T + E+          +
Sbjct: 79  AMADAIIDDVSREKSMREDHKSFDD--VIPAKKIIDWKNANPVTIINEYCQITKRDW-SF 135

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           ++    GP + P F   V+I G    +    SKR A+  AA   + + 
Sbjct: 136 RIESV-GPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 182


>gi|213627304|gb|AAI71078.1| hypothetical protein LOC100135229 [Xenopus (Silurana) tropicalis]
          Length = 698

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 7/86 (8%)

Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
           + K    +A+ S +        L      +     +YK+  +SGP H P FT+ V++ G 
Sbjct: 375 LRKVLDSKAIDSNQ----PMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGT 428

Query: 199 APAQGMDCSKRAAEQVAAAEVLKREG 224
              +    SK+ A+   A +VL+  G
Sbjct: 429 TH-EASGPSKKTAKLHVAVKVLQAMG 453



 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           K  + E    + G+  +Y++   SG  HD RF + VE+      +G   +K+
Sbjct: 512 KNPVMELNEKRRGL--KYELISESGGSHDKRFVMEVEVDAQK-FRGAGPNKK 560


>gi|169642169|gb|AAI60423.1| LOC100135229 protein [Xenopus (Silurana) tropicalis]
          Length = 675

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 7/86 (8%)

Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
           + K    +A+ S +        L      +     +YK+  +SGP H P FT+ V++ G 
Sbjct: 375 LRKVLDSKAIDSNQ----PMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGT 428

Query: 199 APAQGMDCSKRAAEQVAAAEVLKREG 224
              +    SK+ A+   A +VL+  G
Sbjct: 429 TH-EASGPSKKTAKLHVAVKVLQAMG 453



 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           K  + E    + G+  +Y++   SG  HD RF + VE+      +G   +K+
Sbjct: 512 KNPVMELNEKRRGL--KYELISESGGSHDKRFVMEVEVDAQK-FRGAGPNKK 560


>gi|6969701|gb|AAF33913.1| TE3L [Vaccinia virus Tian Tan]
          Length = 115

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 39/110 (35%), Gaps = 3/110 (2%)

Query: 114 IQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTP 173
           +   + +++I  +  +  +       D     + +       +  T + E+         
Sbjct: 1   MLMLMADAIIDDVSREKSMREDHKSFDDVIPAKKI-IDWKDANPVTIINEYCQITKRDW- 58

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            +++    GP + P F   V+I G    +    SKR A+  AA   + + 
Sbjct: 59  SFRIESV-GPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 107


>gi|240142575|ref|YP_002967088.1| hypothetical protein MexAM1_META2p0952 [Methylobacterium extorquens
           AM1]
 gi|240012522|gb|ACS43747.1| Hypothetical protein MexAM1_META2p0952 [Methylobacterium extorquens
           AM1]
          Length = 690

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI--SGLAPAQ--GMDCSKRAAE 212
           A+T L+     +    P ++V    GP H P FT V  +   G           SK+ AE
Sbjct: 610 ARTRLETACRKRKWPMPRFEVKG-DGPSHAPTFTAVARLRAGGRDLVTPACAGRSKKEAE 668

Query: 213 QVAAAEVL 220
           +VAA  +L
Sbjct: 669 RVAARAML 676



 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 5/67 (7%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VVVEISGLAPA- 201
            R   +     + +  LQE+        P Y+V    GP HD  F     V + G   + 
Sbjct: 502 PRPAPAAGPELNPRNRLQEYCAGAKHPAPTYEV-SERGPPHDRVFEAVATVRVGGRTISS 560

Query: 202 -QGMDCS 207
                 S
Sbjct: 561 PSASARS 567


>gi|195497348|ref|XP_002096060.1| GE25279 [Drosophila yakuba]
 gi|194182161|gb|EDW95772.1| GE25279 [Drosophila yakuba]
          Length = 321

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 76/238 (31%), Gaps = 35/238 (14%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQE---------------SYERLEFLGDRILG 52
              +R+G +F   S L++A T  S +   ++                   L   G  I  
Sbjct: 69  AFSQRLGESFK-VSQLQRAFTEKSFAQREEDRRRQLGIEESDLQMPHNSDLVEKGQHIAH 127

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
             +   L +              + L+S ET + V+  L     I            +  
Sbjct: 128 AYVEAFLQHQLPKVPNDGHHAITSFLLSTETLAHVSSHLGTKDLI--------QSTVYPP 179

Query: 113 SI--QADVVESLIAALYLDGGIEVAGTFVDKYW----KQRALKSGKFRRDAKTELQEWAH 166
           S    A  + ++I AL    GIE A  FV  +      QR L      +D    L+    
Sbjct: 180 SAESLAKSLYAVIGALASSSGIEKAFLFVRDFICTQLNQRDLLEVWTPQDPIQLLENICQ 239

Query: 167 AKFGVTPEYKVTFRSGPDHDPR---FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            +     E ++    G   +     + V +  +     +G     + A + AA + L+
Sbjct: 240 ERKLGEAEPRLLADCGK--NTVLGAYQVGIYANRQLLGKGFGEDLKTATETAAIDALQ 295


>gi|326927225|ref|XP_003209793.1| PREDICTED: tRNA-dihydrouridine synthase 2-like, partial [Meleagris
           gallopavo]
          Length = 497

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVA 215
            K  L EW   +    P Y+   R     D  F  VV ++         D SK+ AEQ A
Sbjct: 367 PKMYLLEWCRKEKHPQPVYETVQR---PLDKLFCSVVTVADQKYRSALWDKSKKLAEQAA 423

Query: 216 AAEVLKREGI 225
           A   L+  G+
Sbjct: 424 AIVCLRTLGV 433


>gi|121701443|ref|XP_001268986.1| 60S ribosomal protein L3 [Aspergillus clavatus NRRL 1]
 gi|119397129|gb|EAW07560.1| 60S ribosomal protein L3 [Aspergillus clavatus NRRL 1]
          Length = 406

 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 38/113 (33%), Gaps = 11/113 (9%)

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR------RDAKTELQEWAHAKF 169
           A  V +++ A+YL  G   A  F +++   R L            RD    L      + 
Sbjct: 262 ATFVRAVMGAIYLHAGRPAAKRFFEQHILSRHLNISDLFNFSQPARD----LTRLCAREN 317

Query: 170 GVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              P  K+   +G     P F V +        +G   S   A   AA   LK
Sbjct: 318 FEPPVAKIISETGRKSRHPVFVVGIFSGQDKLGEGAGASLLEARSRAAVAALK 370



 Score = 44.3 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 3/90 (3%)

Query: 5   RYSTLEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH 62
           + + L  R+ Y  +   L  L ++L  +S   S   + E L  LG  +L    S  L   
Sbjct: 84  KLAALHARL-YLPSRLPLETLARSLVDASADPSPDFNNESLATLGHDLLTHYASEHLVCT 142

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELD 92
           +       +     + V  +T + +ARE  
Sbjct: 143 YPRLPLTVIFAAMYAYVGPKTLAAMAREWG 172


>gi|33875035|gb|AAH10169.1| STAU1 protein [Homo sapiens]
          Length = 196

 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 6/66 (9%)

Query: 163 EWAHAKFGVT-----PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           E A  +         P  +V   SGP H   F   V + G    +G   SK+ +++ AA 
Sbjct: 110 EIALKRNLPVNFESFPLKQVARESGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAI 168

Query: 218 EVLKRE 223
            VL+  
Sbjct: 169 AVLEEL 174


>gi|195116871|ref|XP_002002975.1| GI17670 [Drosophila mojavensis]
 gi|193913550|gb|EDW12417.1| GI17670 [Drosophila mojavensis]
          Length = 96

 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 39/82 (47%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F   +EG L++   ++V  + C+ +A++L L  F+  +  L       +        E 
Sbjct: 1   MFPEQEEGGLAMYSAAIVQNQHCALLAKKLQLEEFMLYAQGLDMCHELELRHAMVSCFED 60

Query: 122 LIAALYLDGGIEVAGTFVDKYW 143
           L+ A+ LDGGI VA     ++W
Sbjct: 61  LMGAILLDGGIMVADEVFTRFW 82


>gi|54020805|ref|NP_001005648.1| interleukin enhancer-binding factor 3 [Xenopus (Silurana)
           tropicalis]
 gi|82183774|sp|Q6GL57|ILF3_XENTR RecName: Full=Interleukin enhancer-binding factor 3
 gi|49257941|gb|AAH74653.1| interleukin enhancer binding factor 3, 90kDa [Xenopus (Silurana)
           tropicalis]
          Length = 698

 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+      +    SK+ A+   A +VL+  G+ T
Sbjct: 412 QLKPGLQYKLISQTGPVHAPIFTMSVEVDEKT-FEASGPSKKTAKLHVAVKVLQDMGLPT 470



 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G+   QG   +
Sbjct: 517 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGVK-FQGSGSN 568


>gi|295659761|ref|XP_002790438.1| 54S ribosomal protein L3 [Paracoccidioides brasiliensis Pb01]
 gi|226281615|gb|EEH37181.1| 54S ribosomal protein L3 [Paracoccidioides brasiliensis Pb01]
          Length = 429

 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 84/266 (31%), Gaps = 60/266 (22%)

Query: 1   MSALRYSTLEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58
           +++ + + L  R+        L  L + L   S+  S Q + + L  LG  +L    S  
Sbjct: 115 LNSPKLAALHARLSL-PRRLPLQTLARTLVDESVDPSPQFNNKSLSILGGDLLTYYTSEH 173

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL------------------------- 93
           L + +       L     S + A+  + + RE  L                         
Sbjct: 174 LISTYPRLPIKVLWAAMYSYIGAKPLAAMTREWGLECVADPGAEVDPGFLQFKRLPPDTE 233

Query: 94  ------ASFIRVSSDLRKD--------VCSFMTSIQ---------------ADVVESLIA 124
                  +F+R + +L K           +F  S                 A+ V +++ 
Sbjct: 234 VKTNANGTFLRPNGNLSKRSTSARIIYGDAFGESALPYPVQYEGVTPNRACANFVRAVMG 293

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YL  G   A  F  +++  R L        R    +L +    +    P  K+   +G
Sbjct: 294 AVYLHAGRPAAKQFFKEHFMSRYLNMASLFSFRQPTRDLSKLCRREGFEDPVAKILSETG 353

Query: 183 P-DHDPRFTVVVEISGLAPAQGMDCS 207
              + P F V +        +G   S
Sbjct: 354 RLSNRPVFNVGIFSGPDKLGEGAGGS 379


>gi|189193171|ref|XP_001932924.1| conserved hypothetical protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187978488|gb|EDU45114.1| conserved hypothetical protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 184

 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 56/144 (38%), Gaps = 6/144 (4%)

Query: 10  EKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH---FDSA 66
           ++++GY F N++   +A+ H+          + L  +G   +  ++          +   
Sbjct: 19  QQKLGYTFMNKANAFRAIKHAKNPFGPGFVNDSLAVIGSVKMANVLCNWWSLRPDFYGQE 78

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF---MTSIQADVVESLI 123
              E ++  +  +     + +AR L L S +R           F   +    A++ ++++
Sbjct: 79  SAAEWTMVTHDKLGLTALANLARSLSLDSCLRNPKMFTFADLRFPLMVEKTLANMTKAIM 138

Query: 124 AALYLDGGIEVAGTFVDKYWKQRA 147
            A++LDG  E     + K    + 
Sbjct: 139 GAVFLDGAEEAFVGVMKKLQFDQH 162


>gi|57208665|emb|CAI42821.1| staufen, RNA binding protein, homolog 1 (Drosophila) [Homo sapiens]
          Length = 199

 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 6/66 (9%)

Query: 163 EWAHAKFGVT-----PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           E A  +         P  +V   SGP H   F   V + G    +G   SK+ +++ AA 
Sbjct: 110 EIALKRNLPVNFESFPLKQVARESGPPHMKNFVTKVSV-GEFVGEGEGKSKKISKKNAAI 168

Query: 218 EVLKRE 223
            VL+  
Sbjct: 169 AVLEEL 174


>gi|168054513|ref|XP_001779675.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668873|gb|EDQ55471.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 461

 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 5/128 (3%)

Query: 21  SLLEKALTHSSISHSYQESY-----ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
           +LL  A  H     + +  Y      RL FLG+ +L L ++ L+   F     G L  R 
Sbjct: 93  TLLYLAFQHPDSVRARKAPYVRKAHSRLAFLGEYVLELAMAELVLQMFPRELVGSLRERV 152

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
             L + +      +   +   I    D  +   S        V  +++AA+YL  G+   
Sbjct: 153 FGLTNKKVLPDWLKNASMDRLIYPDGDWGEIKWSDKLKPCKSVFHAIVAAIYLTLGMPEV 212

Query: 136 GTFVDKYW 143
              + + +
Sbjct: 213 YRVLFEAF 220



 Score = 48.9 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 58/163 (35%), Gaps = 22/163 (13%)

Query: 9   LEKRIGY------------AFANRSL---LEKALTHSSI--SHSYQESYERLEFLGDRIL 51
           +E+ +GY            +  N  L   L+    H S   +   +   ERLE+LG ++ 
Sbjct: 297 VERTLGYPQPVRDDNPVLESARNIELQLGLQLCFLHPSAHKAEHPRFCNERLEYLGSKVQ 356

Query: 52  GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111
            ++++  +      A    +  R   L+    C    R L L   I  S D R+++    
Sbjct: 357 DVIMAEKILMKHLDAPGAWIEERHRRLLLNRLCGLYLRNLKLHHHIVYS-DERRELYVKS 415

Query: 112 TSIQ----ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKS 150
             ++      V +++    Y   G       + +      L+S
Sbjct: 416 RKLRNFSTTGVSQAIHGLAYTVYGRPDVRRIMFRVMNFEQLES 458


>gi|134105965|gb|ABO60959.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Macaca
           mulatta]
          Length = 554

 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 6/59 (10%)

Query: 164 WAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            A  K   T  Y+   +   GP+    F    +I       G   SK+ A+Q+AA   L
Sbjct: 108 IAQKKRL-TVNYEQCTSGVHGPEG---FHYKCKIGDKEYGIGTGSSKQEAKQLAAKLAL 162



 Score = 36.6 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 1/48 (2%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           EL ++   +      Y+    +GP HD RFT  V        +    S
Sbjct: 13  ELNKYRQKQGISL-SYQELPNTGPPHDRRFTFQVVTDRRTFPEAEGRS 59


>gi|195568430|ref|XP_002102219.1| GD19616 [Drosophila simulans]
 gi|194198146|gb|EDX11722.1| GD19616 [Drosophila simulans]
          Length = 321

 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 78/235 (33%), Gaps = 35/235 (14%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQE---------------SYERLEFLGDRILGLLI 55
           KR+G +F   S L++A T  S +   ++                   L   G  I    +
Sbjct: 72  KRLGESFE-LSELQRAFTEKSFAEREEDRRRQLGIEESDLQMPHNSDLVEKGQHIGRAYV 130

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI- 114
              L +         L    + L+S ET + V+  L     I            +  S  
Sbjct: 131 EAFLQHQLPKVPNEGLQAIASFLLSTETLAHVSSHLGTKDLI--------QSTEYPPSAE 182

Query: 115 -QADVVESLIAALYLDGGIEVAGTFVDKYW----KQRALKSGKFRRDAKTELQEWAHAKF 169
             A  + ++I AL    GIE A  FV  +      Q+ L      ++    L++    + 
Sbjct: 183 SLAKSLHAVIGALASSSGIERAFLFVRDFICTQLNQKDLLDVWTPQEPIQLLEKICQERK 242

Query: 170 GVTPEYKVTFRSGPDHDPR---FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
               E ++    G   +     + V +  +     +G     + A + AA + L+
Sbjct: 243 LGEVEPRLLGDCGK--NTVLAAYQVGIYANRQLLGKGFGEDVKTATETAALDALQ 295


>gi|145301625|ref|NP_001077417.1| interferon-induced, double-stranded RNA-activated protein kinase
           [Macaca mulatta]
 gi|134105963|gb|ABO60958.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Macaca
           mulatta]
          Length = 554

 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 6/59 (10%)

Query: 164 WAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            A  K   T  Y+   +   GP+    F    +I       G   SK+ A+Q+AA   L
Sbjct: 108 IAQKKRL-TVNYEQCTSGVHGPEG---FHYKCKIGDKEYGIGTGSSKQEAKQLAAKLAL 162



 Score = 36.6 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 1/48 (2%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           EL ++   +      Y+    +GP HD RFT  V        +    S
Sbjct: 13  ELNKYRQKQGISL-SYQELPNTGPPHDRRFTFQVVTDRRTFPEAEGRS 59


>gi|13236216|gb|AAK16103.1|AF291877_1 RNA adenosine deaminase 1 [Mus musculus]
          Length = 660

 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   T L E  H K G + E+++  + GP HDP+F   V +           SK+ A+Q+
Sbjct: 48  KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQM 106

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 107 AAEEAMKAL 115



 Score = 52.8 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+  +Q AA   L
Sbjct: 162 LLEYARSHGFAA-EFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAAL 220

Query: 221 K 221
           +
Sbjct: 221 R 221


>gi|148683240|gb|EDL15187.1| adenosine deaminase, RNA-specific, isoform CRA_c [Mus musculus]
          Length = 700

 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   T L E  H K G + E+++  + GP HDP+F   V +           SK+ A+Q+
Sbjct: 88  KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQM 146

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 147 AAEEAMKAL 155



 Score = 52.8 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+  +Q AA   L
Sbjct: 202 LLEYARSHGFAA-EFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAAL 260

Query: 221 K 221
           +
Sbjct: 261 R 261



 Score = 36.6 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           RF   V I+G         SK+ A+Q AA + +
Sbjct: 9   RFKFQVVINGREFPPAEAGSKKVAKQDAAVKAM 41


>gi|325115276|emb|CBZ50831.1| putative helicase [Neospora caninum Liverpool]
          Length = 4082

 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 39/70 (55%)

Query: 17   FANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
            F    LL  A     I     E+YERLE+LGD ++G L++  LF+ F + +EG LS   N
Sbjct: 3868 FHLPGLLTVARNRDVILPGLAETYERLEYLGDSVIGFLVTDWLFSRFPAFREGPLSEAKN 3927

Query: 77   SLVSAETCSQ 86
             L+S +  ++
Sbjct: 3928 VLLSNQFFAR 3937



 Score = 37.4 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 31/91 (34%), Gaps = 7/91 (7%)

Query: 47   GDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI----RVSSD 102
            G   L +L        F    EG LS      ++ +      R   L + +     V   
Sbjct: 3319 GGSPLSVLTQERADAFFGGVGEGTLSRLRQHYIANDYLRFAMRRFRLQAHLVAFPFVGHK 3378

Query: 103  LRKDVCSFMT---SIQADVVESLIAALYLDG 130
                          +QADVVE+LI A+YL  
Sbjct: 3379 KSLADLREQPVSEKMQADVVEALIGAIYLAN 3409



 Score = 36.2 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 39   SYERLEFLGDRILGLLISTLLFNH-FDSAKEG 69
              +RLE LGD +L  ++ST LF H    A   
Sbjct: 3175 HSQRLELLGDAVLKFIVSTYLFFHVHGDAPPP 3206


>gi|166157977|ref|NP_001107398.1| spermatid perinuclear RNA binding protein [Xenopus (Silurana)
           tropicalis]
 gi|163916317|gb|AAI57348.1| LOC100135229 protein [Xenopus (Silurana) tropicalis]
          Length = 698

 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 7/86 (8%)

Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
           + K    + + S +        L      +     +YK+  +SGP H P FT+ V++ G 
Sbjct: 375 LRKVLDSKVIDSNQ----PMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGT 428

Query: 199 APAQGMDCSKRAAEQVAAAEVLKREG 224
              +    SK+ A+   A +VL+  G
Sbjct: 429 TH-EASGPSKKTAKLHVAVKVLQAMG 453



 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           K  + E    + G+  +Y++   SG  HD RF + VE+      +G   +K+
Sbjct: 512 KNPVMELNEKRRGL--KYELISESGGSHDKRFVMEVEVDAQK-FRGAGPNKK 560


>gi|208690887|gb|ACI31219.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Macaca
           mulatta]
          Length = 554

 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 6/59 (10%)

Query: 164 WAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            A  K   T  Y+   +   GP+    F    +I       G   SK+ A+Q+AA   L
Sbjct: 108 IAQKKRL-TVNYEQCTSGVHGPEG---FHYKCKIGDKEYGIGTGSSKQEAKQLAAKLAL 162



 Score = 36.6 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 1/48 (2%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           EL ++   +      Y+    +GP HD RFT  V        +    S
Sbjct: 13  ELNKYRQKQGISL-SYQELPNTGPPHDRRFTFQVVTDRRTFPEAEGRS 59


>gi|62421274|gb|AAX82394.1| ribonuclease III [Orange-spotted grouper iridovirus]
          Length = 265

 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 74/232 (31%), Gaps = 41/232 (17%)

Query: 18  ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG-------E 70
            N  +     TH S +H    +YE  E LGD I+  ++       F              
Sbjct: 37  KNTQVFHSVFTH-SKAHPVN-NYEWYEKLGDAIIASVMPQYYMERFPKLAHDPSAAVART 94

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSS-DLRKDVCSFMTSIQADVVESLIAALYLD 129
           +S    +  S  T S +A+++    ++                 +  D  E+++ A+ + 
Sbjct: 95  VSQLAITYQSGTTMSTIAQKMGFLKWVVAHRDGAAPASYKEQQRLLEDTFEAMVGAISIT 154

Query: 130 ---------GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT----PEY- 175
                     G      F+   +    ++      D K+ L+E       V      EY 
Sbjct: 155 MDDATGVKCSGHIACYRFLKYAYGLINMRLDGLI-DNKSMLKELIDMHSSVLDSFTFEYT 213

Query: 176 ----KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                +T      H       V ++ L        SKR  E+V A +VL + 
Sbjct: 214 NNVMTLTV----AHGKYMVSEVNVNNL--------SKRELEKVLAGKVLAQL 253


>gi|148693237|gb|EDL25184.1| interleukin enhancer binding factor 3, isoform CRA_a [Mus musculus]
          Length = 553

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 435 QLKPGLQYKLISQTGPVHAPIFTMSVEVDG-SNFEASGPSKKTAKLHVAVKVLQDMGLPT 493


>gi|148693238|gb|EDL25185.1| interleukin enhancer binding factor 3, isoform CRA_b [Mus musculus]
          Length = 909

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 422 QLKPGLQYKLISQTGPVHAPIFTMSVEVDG-SNFEASGPSKKTAKLHVAVKVLQDMGLPT 480



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 532 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 583


>gi|148693240|gb|EDL25187.1| interleukin enhancer binding factor 3, isoform CRA_d [Mus musculus]
          Length = 919

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 435 QLKPGLQYKLISQTGPVHAPIFTMSVEVDG-SNFEASGPSKKTAKLHVAVKVLQDMGLPT 493



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 545 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 596


>gi|148693239|gb|EDL25186.1| interleukin enhancer binding factor 3, isoform CRA_c [Mus musculus]
          Length = 727

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 435 QLKPGLQYKLISQTGPVHAPIFTMSVEVDG-SNFEASGPSKKTAKLHVAVKVLQDMGLPT 493



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 545 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 596


>gi|111607436|ref|NP_001036174.1| interleukin enhancer-binding factor 3 isoform 4 [Mus musculus]
 gi|71044413|gb|AAZ20652.1| nuclear factor 90 [Mus musculus]
          Length = 703

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 411 QLKPGLQYKLISQTGPVHAPIFTMSVEVDG-SNFEASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 521 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 572


>gi|111607434|ref|NP_001036173.1| interleukin enhancer-binding factor 3 isoform 3 [Mus musculus]
 gi|28704095|gb|AAH47272.1| Interleukin enhancer binding factor 3 [Mus musculus]
 gi|71044411|gb|AAZ20651.1| nuclear factor 90 [Mus musculus]
          Length = 716

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 424 QLKPGLQYKLISQTGPVHAPIFTMSVEVDG-SNFEASGPSKKTAKLHVAVKVLQDMGLPT 482



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 534 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 585


>gi|111607430|ref|NP_034691.2| interleukin enhancer-binding factor 3 isoform 1 [Mus musculus]
 gi|27764511|gb|AAO23054.1| interleukin enhancer binding factor 3 [Mus musculus]
 gi|148693241|gb|EDL25188.1| interleukin enhancer binding factor 3, isoform CRA_e [Mus musculus]
          Length = 911

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 424 QLKPGLQYKLISQTGPVHAPIFTMSVEVDG-SNFEASGPSKKTAKLHVAVKVLQDMGLPT 482



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 534 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 585


>gi|3834675|gb|AAC71052.1| interleukin enhancer binding factor 3 [Mus musculus]
          Length = 911

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 424 QLKPGLQYKLISQTGPVHAPIFTMSVEVDG-SNFEASGPSKKTAKLHVAVKVLQDMGLPT 482



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 534 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 585


>gi|62859019|ref|NP_001016230.1| dihydrouridine synthase 2-like, SMM1 homolog [Xenopus (Silurana)
           tropicalis]
 gi|89268176|emb|CAJ82133.1| similar to dus2l (dihydrouridine synthase 2-like) [Xenopus
           (Silurana) tropicalis]
          Length = 495

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVA 215
            K  L EW   +    P Y    R     D  F  VV++  +  A    D SK+ AEQ A
Sbjct: 367 PKMLLLEWCRKRKLPQPVYHTVQR---PVDKFFQSVVKVDEMQYASTLWDKSKKLAEQSA 423

Query: 216 AAEVLKREGI 225
           A   L   G+
Sbjct: 424 AIVCLHTLGL 433


>gi|111607432|ref|NP_001036172.1| interleukin enhancer-binding factor 3 isoform 2 [Mus musculus]
 gi|62512154|sp|Q9Z1X4|ILF3_MOUSE RecName: Full=Interleukin enhancer-binding factor 3
 gi|21070213|gb|AAM34210.1|AF506968_1 interleukin enhancer binding factor 3 [Mus musculus]
 gi|26339136|dbj|BAC33239.1| unnamed protein product [Mus musculus]
 gi|27764513|gb|AAO23055.1| interleukin enhancer binding factor 3 [Mus musculus]
          Length = 898

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 411 QLKPGLQYKLISQTGPVHAPIFTMSVEVDG-SNFEASGPSKKTAKLHVAVKVLQDMGLPT 469



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 521 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 572


>gi|26346424|dbj|BAC36863.1| unnamed protein product [Mus musculus]
          Length = 528

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SK+ A+   A +VL+  G+ T
Sbjct: 424 QLKPGLQYKLISQTGPVHAPIFTMSVEVDG-SNFEASGPSKKTAKLHVAVKVLQDMGLPT 482


>gi|13236212|gb|AAK16101.1|AF291875_1 RNA adenosine deaminase 1 [Mus musculus]
          Length = 634

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   T L E  H K G + E+++  + GP HDP+F   V +           SK+ A+Q+
Sbjct: 48  KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQM 106

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 107 AAEEAMKAL 115



 Score = 52.8 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+  +Q AA   L
Sbjct: 162 LLEYARSHGFAA-EFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAAL 220

Query: 221 K 221
           +
Sbjct: 221 R 221


>gi|148683241|gb|EDL15188.1| adenosine deaminase, RNA-specific, isoform CRA_d [Mus musculus]
          Length = 674

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +   T L E  H K G + E+++  + GP HDP+F   V +           SK+ A+Q+
Sbjct: 88  KSPVTTLLECMH-KLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQM 146

Query: 215 AAAEVLKRE 223
           AA E +K  
Sbjct: 147 AAEEAMKAL 155



 Score = 52.8 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +      E+K+  +SGP H+P+F    ++ G         SK+  +Q AA   L
Sbjct: 202 LLEYARSHGFAA-EFKLIDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAAL 260

Query: 221 K 221
           +
Sbjct: 261 R 261



 Score = 36.6 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           RF   V I+G         SK+ A+Q AA + +
Sbjct: 9   RFKFQVVINGREFPPAEAGSKKVAKQDAAVKAM 41


>gi|118096265|ref|XP_414079.2| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 518

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVA 215
            K  L EW   +    P Y+   R     D  F  VV ++         D SK+ AEQ A
Sbjct: 395 PKMYLLEWCRKEKHPQPVYETVQR---PLDRLFCSVVTVADQKYRSALWDKSKKLAEQAA 451

Query: 216 AAEVLKREGI 225
           A   L+  G+
Sbjct: 452 AIVCLRTLGV 461


>gi|5830605|emb|CAB54644.1| C3L protein [Variola minor virus]
 gi|94484303|gb|ABF23417.1| double-stranded RNA binding protein [Variola virus]
          Length = 192

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 39/108 (36%), Gaps = 9/108 (8%)

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK-----TELQEWAHAKFGVTPEY 175
           S+  A+  D   E +     K +    +   K   D K     T + E+          +
Sbjct: 81  SMADAIIDDVSREKSMREDHKSFDD--VIPAKKIIDWKNANPVTIINEYCQITKRDW-SF 137

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           ++    GP + P F   V+I G    +    SKR A+  AA   + + 
Sbjct: 138 RIESV-GPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLAVDKL 184


>gi|226481549|emb|CAX73672.1| Protein DGCR8 (DiGeorge syndrome critical region 8) [Schistosoma
           japonicum]
          Length = 369

 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+        P Y+ T     D +P + + V I+G     G   SK+ A   AA + L
Sbjct: 84  LHEYCQNVIRHPPTYQTTVLE-NDKNP-YQMTVFINGTPYGTGTGQSKKCARLEAARKAL 141

Query: 221 K 221
           +
Sbjct: 142 E 142


>gi|159164237|pdb|2DMY|A Chain A, Solution Structure Of Dsrm Domain In Spermatid Perinuclear
           Rna-Bind Protein
          Length = 97

 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 8/80 (10%)

Query: 150 SGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
           SG+   D+K       L      +     +YK+  +SGP H P FT+ V++ G    +  
Sbjct: 6   SGRKILDSKAIDLMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EAS 62

Query: 205 DCSKRAAEQVAAAEVLKREG 224
             SK+ A+   A +VL+  G
Sbjct: 63  GPSKKTAKLHVAVKVLQAMG 82


>gi|117558547|gb|AAI27296.1| LOC548984 protein [Xenopus (Silurana) tropicalis]
          Length = 451

 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVA 215
            K  L EW   +    P Y    R     D  F  VV++  +  A    D SK+ AEQ A
Sbjct: 323 PKMLLLEWCRKRKLPQPVYHTVQR---PVDKFFQSVVKVDEMQYASTLWDKSKKLAEQSA 379

Query: 216 AAEVLKREGI 225
           A   L   G+
Sbjct: 380 AIVCLHTLGL 389


>gi|158323839|gb|ABW34424.1| RNase3 class I protein [Sweet potato chlorotic stunt virus]
          Length = 220

 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 48/218 (22%), Positives = 77/218 (35%), Gaps = 37/218 (16%)

Query: 29  HS--SISHS--YQESYERLEFLGDRILGLLISTLLFNHFD-SAKEGELSVRFNSLVSAET 83
           H   SI HS       +R E LGD  +   ++ +L + F  +A    LS+     +S   
Sbjct: 13  HRLDSIVHSICTSGDRDRYEILGDWAVASYVTRMLTDLFKHNADAESLSLLRAHNISNVM 72

Query: 84  CSQVARELDL-ASFIRVSSDLRKDVCSF-----------MTSIQADVVESLIAALYLDGG 131
            ++V  E  L   F    +  +  +C                  A+  E ++  L +   
Sbjct: 73  FAKVMVESKLFEDFSLWLTPDQMQLCRKTFAGGRSLYEVNVKFLANYFERIVGWLVVHDC 132

Query: 132 IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT----PEYKVTFRSGPDHDP 187
            E    F+D + K     S   ++ A++ L+EWA            EY V          
Sbjct: 133 SESVEKFLDLFLKPHM--SFHIKKPARSILEEWAMKNNKRLDIHTGEYNVNK-------- 182

Query: 188 RFTVVVEISGLAPAQGMDC-SKRAAEQVA---AAEVLK 221
              V V + G   ++  D  SK+ A   A   A E L 
Sbjct: 183 --VVYVLVDGQEVSRASDLISKKRAISKAVSFAVEALN 218


>gi|311252821|ref|XP_003125284.1| PREDICTED: interferon-induced, double-stranded RNA-activated
           protein kinase-like [Sus scrofa]
          Length = 242

 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 20/44 (45%)

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             G D   +F    +I       G+  +K+ A+Q+AA +  ++ 
Sbjct: 122 EPGEDGPEKFHYKCKIGRKVYGSGVGSTKQEAKQLAAKQAYEKL 165



 Score = 44.7 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 18/42 (42%)

Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             K  V  +Y+   ++GP H+ RFT  V I      +    S
Sbjct: 18  QQKNDVILKYRELCKTGPAHNLRFTYQVVIDEKEFPKAEGRS 59


>gi|327396952|dbj|BAK14318.1| RNase III-like ribonuclease [Red sea bream iridovirus]
          Length = 265

 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 78/233 (33%), Gaps = 43/233 (18%)

Query: 18  ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG-------E 70
            N  +     TH S +H    +YE  E LGD I+  ++       F              
Sbjct: 37  KNTQVFHSVFTH-SKAHPVN-NYEWYEKLGDAIIASVMPQYYMERFPKLAHDPSATVART 94

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSS-DLRKDVCSFMTSIQADVVESLIAALYLD 129
           +S    +  S  T S +A+++    ++                 +  D  E+++ A+ + 
Sbjct: 95  VSQLAITYQSGTTMSTIAQKMGFLKWVVAHRDGAAPASYKEQQRLLEDTFEAMVGAISIT 154

Query: 130 ---------GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT----PEY- 175
                     G      F+   +    ++      D K+ L+E       V      EY 
Sbjct: 155 MDDATGVKCSGHIACYRFLKYAYGLINMRLDGLI-DNKSMLKELIDMHSSVLDSFTFEYT 213

Query: 176 ----KVTFRSGPDHDPRFTV-VVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                +T   G     ++TV  V ++ L        SKR  E+V A +VL + 
Sbjct: 214 NNVMTLTVAHG-----KYTVSEVNVNNL--------SKRELEKVLAGKVLAQL 253


>gi|154296416|ref|XP_001548639.1| predicted protein [Botryotinia fuckeliana B05.10]
 gi|150843395|gb|EDN18588.1| predicted protein [Botryotinia fuckeliana B05.10]
          Length = 319

 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/160 (24%), Positives = 64/160 (40%), Gaps = 14/160 (8%)

Query: 9   LEKRIGYAFANRSLLEKAL-THSSISHSYQES-------YERLEFLGDRILGLLIST-LL 59
           L+  + Y F N  +LE+AL T  +      +S        E L  LG+  + L++     
Sbjct: 160 LQSFLSYTFNNPDILEEALETPKNGVTCVGKSMRICLDGNEGLAKLGETAIRLVMREQFY 219

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS-----SDLRKDVCSFMTSI 114
                  +  ++  R  S VS      +A  +     I +S       +++D     T I
Sbjct: 220 LFSIPEVQASQILNRILSRVSLSAYPTIASCIRPQPSIPMSFRNIIELVKEDTREDNTRI 279

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR 154
            +  V ++I A+YLDGGIE A   ++       L  G  R
Sbjct: 280 ISRAVRAVIGAVYLDGGIESAKKIMENLQMGIKLPPGSKR 319


>gi|111184243|gb|ABH08163.1| HSPV060 [Horsepox virus]
          Length = 190

 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%)

Query: 147 ALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201
            +   K   D K     T + E+          +++    GP + P F   V+I G    
Sbjct: 103 DVIPAKKIIDWKDANPVTIINEYCQITKRDW-SFRIESV-GPSNSPTFYACVDIDGRVFD 160

Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223
           +    SKR A+  AA   + + 
Sbjct: 161 KADGKSKRDAKNNAAKLAVDKL 182


>gi|94488139|gb|ABF27234.1| double-stranded RNA binding protein [Variola virus]
 gi|94488339|gb|ABF27433.1| double-stranded RNA binding protein [Variola virus]
 gi|109726123|gb|ABG45239.1| double-stranded RNA binding protein [Variola virus]
          Length = 192

 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%)

Query: 147 ALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201
            +   K   D K     T + E+          +++    GP + P F   V+I G    
Sbjct: 105 DVIPAKKIIDWKNANPVTIINEYCQITKRDW-SFRIESV-GPSNSPTFYACVDIDGRVFD 162

Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223
           +    SKR A+  AA   + + 
Sbjct: 163 KADGKSKRDAKNNAAKLAVDKL 184


>gi|37551503|gb|AAQ93155.1| double-stranded RNA binding protein [Vaccinia virus]
          Length = 190

 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%)

Query: 147 ALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201
            +   K   D K     T + E+          +++    GP + P F   V+I G    
Sbjct: 103 DVIPAKKIIDWKDANPVTIINEYCQITKRDW-SFRIESV-GPSNSPTFYACVDIDGRVFD 160

Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223
           +    SKR A+  AA   + + 
Sbjct: 161 KADGKSKRDAKNNAAKLAVDKL 182


>gi|88900676|gb|ABD57588.1| VACV056 [Vaccinia virus]
          Length = 190

 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%)

Query: 147 ALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201
            +   K   D K     T + E+          +++    GP + P F   V+I G    
Sbjct: 103 DVIPAKKIIDWKDANPVTIINEYCQITKRDW-SFRIESV-GPSNSPTFYACVDIDGRVFD 160

Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223
           +    SKR A+  AA   + + 
Sbjct: 161 KADGKSKRDAKNNAAKLAVDKL 182


>gi|30519433|emb|CAD90608.1| F3L protein [Cowpox virus]
          Length = 190

 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%)

Query: 147 ALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201
            +   K   D K     T + E+          +++    GP + P F   V+I G    
Sbjct: 103 DVIPAKKIIDWKDANPVTIINEYCQITKRDW-SFRIESV-GPSNSPTFYACVDIDGRVFD 160

Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223
           +    SKR A+  AA   + + 
Sbjct: 161 KADGKSKRDAKNNAAKLAVDKL 182


>gi|544827|gb|AAB29618.1| E3L product [variola virus VAR, India-1967, Peptide, 190 aa]
          Length = 190

 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%)

Query: 147 ALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201
            +   K   D K     T + E+          +++    GP + P F   V+I G    
Sbjct: 103 DVIPAKKIIDWKNAMPVTIINEYCQITKRDW-SFRIESV-GPSNSPTFYACVDIDGRVFD 160

Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223
           +    SKR A+  AA   + + 
Sbjct: 161 KADGKSKRDAKNNAAKLAVDKL 182


>gi|18640289|ref|NP_570445.1| CMLV055 [Camelpox virus]
 gi|18482965|gb|AAL73762.1|AF438165_52 putative dsRNA-binding PKR inhibitor [Camelpox virus M-96]
 gi|19717992|gb|AAG37517.1| CMP55L [Camelpox virus CMS]
          Length = 190

 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%)

Query: 147 ALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201
            +   K   D K     T + E+          +++    GP + P F   V+I G    
Sbjct: 103 DVIPAKKIIDWKNTNPVTIINEYCQITKRDW-SFRIESV-GPSNSPTFYACVDIDGRVFD 160

Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223
           +    SKR A+  AA   + + 
Sbjct: 161 KADGKSKRDAKNNAAKLAVDKL 182


>gi|2772689|gb|AAB96428.1| dsRNA dependent PK inhibitor [Vaccinia virus]
 gi|38348925|gb|AAR17901.1| double-stranded RNA binding protein [Vaccinia virus]
 gi|47088378|gb|AAT10448.1| double-stranded RNA binding protein [Vaccinia virus]
 gi|90819719|gb|ABD98529.1| VACV-DUKE-067 [Vaccinia virus]
 gi|160857941|emb|CAM58229.1| double-stranded RNA binding protein [Vaccinia virus Ankara]
          Length = 190

 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%)

Query: 147 ALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201
            +   K   D K     T + E+          +++    GP + P F   V+I G    
Sbjct: 103 DVIPAKKIIDWKDANPVTIINEYCQITKRDW-SFRIESV-GPSNSPTFYACVDIDGRVFD 160

Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223
           +    SKR A+  AA   + + 
Sbjct: 161 KADGKSKRDAKNNAAKLAVDKL 182


>gi|438962|gb|AAA60792.1| homolog of vaccinia virus CDS E3L (interferon resistance factor);
           putative [Variola major virus]
 gi|94483894|gb|ABF23010.1| double-stranded RNA binding protein [Variola virus]
 gi|94484097|gb|ABF23212.1| double-stranded RNA binding protein [Variola virus]
 gi|94484507|gb|ABF23620.1| double-stranded RNA binding protein [Variola virus]
 gi|94484704|gb|ABF23816.1| double-stranded RNA binding protein [Variola virus]
 gi|94484902|gb|ABF24013.1| double-stranded RNA binding protein [Variola virus]
 gi|94485100|gb|ABF24210.1| double-stranded RNA binding protein [Variola virus]
 gi|94485302|gb|ABF24411.1| double-stranded RNA binding protein [Variola virus]
 gi|94485505|gb|ABF24613.1| double-stranded RNA binding protein [Variola virus]
 gi|94485910|gb|ABF25016.1| double-stranded RNA binding protein [Variola virus]
 gi|94486922|gb|ABF26023.1| double-stranded RNA binding protein [Variola virus]
 gi|94487328|gb|ABF26427.1| double-stranded RNA binding protein [Variola virus]
 gi|94487531|gb|ABF26629.1| double-stranded RNA binding protein [Variola virus]
 gi|94487732|gb|ABF26829.1| double-stranded RNA binding protein [Variola virus]
 gi|94488539|gb|ABF27632.1| double-stranded RNA binding protein [Variola virus]
 gi|94488740|gb|ABF27832.1| double-stranded RNA binding protein [Variola virus]
 gi|94488941|gb|ABF28032.1| double-stranded RNA binding protein [Variola virus]
 gi|94489141|gb|ABF28231.1| double-stranded RNA binding protein [Variola virus]
 gi|94489340|gb|ABF28429.1| double-stranded RNA binding protein [Variola virus]
 gi|94489543|gb|ABF28631.1| double-stranded RNA binding protein [Variola virus]
 gi|94489742|gb|ABF28829.1| double-stranded RNA binding protein [Variola virus]
 gi|94489947|gb|ABF29033.1| double-stranded RNA binding protein [Variola virus]
 gi|109724290|gb|ABG43415.1| double-stranded RNA binding protein [Variola virus]
 gi|109724492|gb|ABG43616.1| double-stranded RNA binding protein [Variola virus]
 gi|109724697|gb|ABG43820.1| double-stranded RNA binding protein [Variola virus]
 gi|109724901|gb|ABG44023.1| double-stranded RNA binding protein [Variola virus]
 gi|109726326|gb|ABG45441.1| double-stranded RNA binding protein [Variola virus]
          Length = 192

 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%)

Query: 147 ALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201
            +   K   D K     T + E+          +++    GP + P F   V+I G    
Sbjct: 105 DVIPAKKIIDWKNANPVTIINEYCQITKRDW-SFRIESV-GPSNSPTFYACVDIDGRVFD 162

Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223
           +    SKR A+  AA   + + 
Sbjct: 163 KADGKSKRDAKNNAAKLAVDKL 184


>gi|137621|sp|P21081|VE03_VACCC RecName: Full=Protein E3; AltName: Full=p25
 gi|335388|gb|AAA48040.1| putative E3L [Vaccinia virus Copenhagen]
          Length = 190

 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%)

Query: 147 ALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201
            +   K   D K     T + E+          +++    GP + P F   V+I G    
Sbjct: 103 DVIPAKKIIDWKDANPVTIINEYCQITKRDW-SFRIESV-GPSNSPTFYACVDIDGRVFD 160

Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223
           +    SKR A+  AA   + + 
Sbjct: 161 KADGKSKRDAKNNAAKLAVDKL 182


>gi|9627565|ref|NP_042088.1| double-strand RNA-binding protein [Variola virus]
 gi|465071|sp|P33863|VE03_VAR67 RecName: Full=Protein E3
 gi|297225|emb|CAA48985.1| E3L [Variola virus]
 gi|745160|prf||2015436AY E3L gene
          Length = 190

 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%)

Query: 147 ALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201
            +   K   D K     T + E+          +++    GP + P F   V+I G    
Sbjct: 103 DVIPAKKIIDWKNANPVTIINEYCQITKRDW-SFRIESV-GPSNSPTFYACVDIDGRVFD 160

Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223
           +    SKR A+  AA   + + 
Sbjct: 161 KADGKSKRDAKNNAAKLAVDKL 182


>gi|327267093|ref|XP_003218337.1| PREDICTED: 39S ribosomal protein L44, mitochondrial-like [Anolis
           carolinensis]
          Length = 321

 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 66/223 (29%), Gaps = 29/223 (13%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALT-HSSISHSYQ----------------ESYERLEFLG 47
                  RI   F+   LL+ A   H  I H                   +    L   G
Sbjct: 60  EIQAFSHRIHEKFS-LDLLKTAFVNHCYIKHEESRRQVLGLEKEAIALNLKDNHELYLQG 118

Query: 48  DRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107
           +    L +       +       +    N L S E  S +A+ L L      +       
Sbjct: 119 NSFSHLYLRQCFEEAYPKMPPAGIEALVNFLTSEELVSYLAQNLSLQDLTLCAEFPVPT- 177

Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR----DAKTELQE 163
                ++      ++I AL    G +    FV  ++  + +    F      +    L E
Sbjct: 178 -----NVLQQTFFAVIGALLQSSGSQRTKLFVRDFFIPQLIGKELFEMWNVINPMGLLME 232

Query: 164 WAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMD 205
               +    PE ++T +SG     P + V +  +    A+G  
Sbjct: 233 ELTKRNISAPEPRLTRQSGASTALPLYFVGLYCNKKLLAEGTG 275


>gi|317018626|gb|ADU86891.1| E3L [Vaccinia virus]
          Length = 179

 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%)

Query: 147 ALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201
            +   K   D K     T + E+          +++    GP + P F   V+I G    
Sbjct: 97  DVIPAKKIIDWKSANPVTIINEYCQITRRDW-SFRIESV-GPSNSPTFYACVDIDGRVFD 154

Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223
           +    SKR A+  AA   + + 
Sbjct: 155 KADGKSKRDAKNNAAKLAVDKL 176


>gi|156401537|ref|XP_001639347.1| predicted protein [Nematostella vectensis]
 gi|156226475|gb|EDO47284.1| predicted protein [Nematostella vectensis]
          Length = 880

 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 9/74 (12%)

Query: 157 AKTELQEWAHAKFGVTPEY---KVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAE 212
            K +LQE+        P Y   KV  +     D +F   + + G    +   C +K+ +E
Sbjct: 810 YKNQLQEYCDKNKKGAPIYDSKKVELQV----DGKFVCDLLVDGFT-FRAKGCQTKKGSE 864

Query: 213 QVAAAEVLKREGIW 226
           Q AA   L+R G+ 
Sbjct: 865 QSAARIALQRFGVL 878



 Score = 53.2 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 4/78 (5%)

Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           +         K  LQE+A  K    P Y     S        + VV       + G+   
Sbjct: 575 IPGDDNFISFKNSLQEFAQKKGIPVPRY----FSKKAQIGMMSTVVISDHKFHSTGLHKD 630

Query: 208 KRAAEQVAAAEVLKREGI 225
           K+ +EQ AA   LK+ GI
Sbjct: 631 KKQSEQNAAWFALKKLGI 648



 Score = 43.5 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 16/70 (22%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFR------SGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
            K++L E+        P+Y+          +   +   +   V +           +K+A
Sbjct: 688 YKSQLNEFCQKFHLAIPQYRTQREARGYVCTMLYNKKVYHSTVPL----------KNKKA 737

Query: 211 AEQVAAAEVL 220
           AEQ  A  VL
Sbjct: 738 AEQNVAQYVL 747


>gi|77434241|gb|ABA82144.1| double-stranded RNA-binding protein [Vaccinia virus]
 gi|77434344|gb|ABA82147.1| double-stranded RNA-binding protein [Vaccinia virus]
          Length = 179

 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%)

Query: 147 ALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201
            +   K   D K     T + E+          +++    GP + P F   V+I G    
Sbjct: 97  DVIPAKKIIDWKDANPVTIINEYCQITRRDW-SFRIESV-GPSNSPTFYACVDIDGRVFD 154

Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223
           +    SKR A+  AA   + + 
Sbjct: 155 KADGKSKRDAKNNAAKLAVDKL 176


>gi|91084595|ref|XP_974201.1| PREDICTED: similar to 39S ribosomal protein L44 [Tribolium
           castaneum]
 gi|270008900|gb|EFA05348.1| hypothetical protein TcasGA2_TC015512 [Tribolium castaneum]
          Length = 294

 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 82/236 (34%), Gaps = 41/236 (17%)

Query: 11  KRIGYAFANRSLLEKALTHSSI-SHSYQESYER-LEF-----------LGDRILGLLIST 57
           KR+   F +R +L++ALTH S  +    ++ E+ LEF            G  ++   +  
Sbjct: 73  KRLREEF-DRKVLKQALTHRSYVTREEDKAKEKGLEFETIECNHQLIKQGGALISQCVRN 131

Query: 58  LLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
            L   +       L     ++   +  + V   L L   ++ +    ++         AD
Sbjct: 132 ELGGKYPKDVVEALHGHLTTV---DMLAHVGLHLGLKDIVQTAEFPVENE------TLAD 182

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRA-------LKSGKFRRDA-KTEL--QEWAHA 167
             ++++AAL +  G E    FV  +   +        + +     D  ++ L  QE    
Sbjct: 183 TFKAVVAALEVSQGQERVQLFVKDFLLSQLNGKDVYDVWAPDSPLDYLRSLLPKQEIESR 242

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               +    +           + V +  +      G   S   A+  AA + ++R 
Sbjct: 243 LCNKSAVNTILA--------NYQVGLYCNKKLLGLGWGESVEIAKDTAALDAIQRL 290


>gi|55140600|gb|AAV41839.1| putative double-stranded RNA binding protein [Cantagalo virus]
          Length = 190

 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%)

Query: 147 ALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201
            +   K   D K     T + E+          +++    GP + P F   V+I G    
Sbjct: 103 DVIPAKKIIDWKDANPVTIINEYCQITRRDW-SFRIESV-GPSNSPTFYACVDIDGRVFD 160

Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223
           +    SKR A+  AA   + + 
Sbjct: 161 KADGKSKRDAKNNAAKLAVDKL 182


>gi|297821192|ref|XP_002878479.1| double-stranded RNA-binding domain (dsrbd)-containing protein 4
           [Arabidopsis lyrata subsp. lyrata]
 gi|297324317|gb|EFH54738.1| double-stranded RNA-binding domain (dsrbd)-containing protein 4
           [Arabidopsis lyrata subsp. lyrata]
          Length = 343

 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            A  +  + P Y  T  SGP H P F   VE +G         +K+ AE  AA   
Sbjct: 80  IAQKENSMLPVYA-TATSGPSHSPTFISTVEFAGKVFTGDEAKTKKLAEMSAAKIA 134



 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 10/69 (14%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-----APAQGMDCSKRAA 211
            K +LQ +A       P Y    R GP H PRF   V   G              + ++A
Sbjct: 5   YKGQLQAYALKHNLELPVYA-NEREGPPHAPRFRCKVTFCGQTFQSLEFF----PTLKSA 59

Query: 212 EQVAAAEVL 220
           E  AA   L
Sbjct: 60  EHAAAKIAL 68


>gi|213626233|gb|AAI70035.1| Unknown (protein for MGC:196762) [Xenopus laevis]
          Length = 1313

 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            ++  + L E       +  E+++  + GP HDP+FT  V+I        +  +K+ A+ 
Sbjct: 720 NKNPISLLMEHGQKSGNMC-EFQLVSQEGPPHDPKFTYTVKIGNQTFPPVVANNKKMAKH 778

Query: 214 VAAAEVLKRE 223
           +AA   ++  
Sbjct: 779 LAAEAAVREL 788



 Score = 40.4 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
           +  + L E+A AK     E+K+  ++GP HDP+F    ++ G 
Sbjct: 839 NPVSGLLEYARAKGFAA-EFKMVNQTGPPHDPKFVFQAKVGGR 880



 Score = 37.7 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 154 RRDAKTELQEWAH--AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            ++  + L E+ H  ++     ++ +  +SGP HDPRF +   I G         S
Sbjct: 616 EKNPVSGLLEFTHYCSQQC---DFALLNQSGPSHDPRFKIQAVIDGRRFPVAEANS 668


>gi|148233972|ref|NP_001081675.1| adenosine deaminase, RNA-specific [Xenopus laevis]
 gi|1932813|gb|AAB51687.1| dsRNA adenosine deaminase [Xenopus laevis]
          Length = 1270

 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            ++  + L E       +  E+++  + GP HDP+FT  V+I        +  +K+ A+ 
Sbjct: 677 NKNPISLLMEHGQKSGNMC-EFQLVSQEGPPHDPKFTYTVKIGNQTFPPVVANNKKMAKH 735

Query: 214 VAAAEVLKRE 223
           +AA   ++  
Sbjct: 736 LAAEAAVREL 745



 Score = 40.4 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
           +  + L E+A AK     E+K+  ++GP HDP+F    ++ G 
Sbjct: 796 NPVSGLLEYARAKGFAA-EFKMVNQTGPPHDPKFVFQAKVGGR 837



 Score = 37.7 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 154 RRDAKTELQEWAH--AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            ++  + L E+ H  ++     ++ +  +SGP HDPRF +   I G         S
Sbjct: 572 EKNPVSGLLEFTHYCSQQC---DFALLNQSGPSHDPRFKIQAVIDGRRFPVAEANS 624


>gi|21357105|ref|NP_649541.1| mitochondrial ribosomal protein L44 [Drosophila melanogaster]
 gi|7296746|gb|AAF52025.1| mitochondrial ribosomal protein L44 [Drosophila melanogaster]
          Length = 321

 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 80/235 (34%), Gaps = 35/235 (14%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQE---------------SYERLEFLGDRILGLLI 55
           KR+G +F   S L++A T  S +   ++                   L   G +I    +
Sbjct: 72  KRLGESFE-LSELQRAFTEKSFAEREEDRRRQLGIEESDLQMPHNSDLVEKGQQIARAYV 130

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI- 114
              L +         L    + L+S ET + V+  L     I            +  S  
Sbjct: 131 EAFLQHQLPKVPNEGLQAIASYLLSTETLAHVSTHLGTKDLI--------QSTEYPPSAE 182

Query: 115 -QADVVESLIAALYLDGGIEVAGTFVDKYW----KQRALKSGKFRRDAKTELQEWAHAKF 169
            QA  + ++I AL    GIE A  FV  +      Q+ L      ++    L++    + 
Sbjct: 183 SQAKSLHAVIGALASSSGIERAFIFVRDFICTQLNQKDLLEVWTPQEPIQLLEKICQERK 242

Query: 170 GVTPEYKVTFRSGPDHDPR---FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
               E ++    G   +     + V +  +     +G     + A + AA + L+
Sbjct: 243 LGEAEPRLLGDCGK--NTVLAAYQVGIYANRQLLGKGFGEDVKTATETAALDALQ 295


>gi|328865991|gb|EGG14377.1| hypothetical protein DFA_12149 [Dictyostelium fasciculatum]
          Length = 336

 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 3/71 (4%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGMDCSKRA 210
           + + K  LQE         P Y  + +        FT  V+ S    +    G   +K+ 
Sbjct: 26  QENYKGVLQELCQKTKEPVPIYSESVQHYEGGQNLFTSEVKCSMKGVSFVNSGKGKTKKE 85

Query: 211 AEQVAAAEVLK 221
           AE+ +A   L+
Sbjct: 86  AEKNSAFSTLQ 96


>gi|94483690|gb|ABF22807.1| double-stranded RNA binding protein [Variola virus]
 gi|94485708|gb|ABF24815.1| double-stranded RNA binding protein [Variola virus]
 gi|94487937|gb|ABF27033.1| double-stranded RNA binding protein [Variola virus]
          Length = 192

 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%)

Query: 147 ALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201
            +   K   D K     T + E+          +++    GP + P F   V+I G    
Sbjct: 105 DVIPAKKIIDWKNANPVTIINEYCQITKRDW-SFRIESV-GPSNSPTFYACVDIDGRVFN 162

Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223
           +    SKR A+  AA   + + 
Sbjct: 163 KADGKSKRDAKNNAAKLAVDKL 184


>gi|66802830|ref|XP_635258.1| hypothetical protein DDB_G0291496 [Dictyostelium discoideum AX4]
 gi|60463547|gb|EAL61732.1| hypothetical protein DDB_G0291496 [Dictyostelium discoideum AX4]
          Length = 357

 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 48/123 (39%), Gaps = 5/123 (4%)

Query: 34  HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL 93
            +++E +E LEF GD  L  LIST L N+        L+   +   S +         +L
Sbjct: 26  KTHKERFEILEFHGDSTLSYLISTYLLNYKTYYNPHLLTKLRSLASSNQLLCDFFNLFEL 85

Query: 94  ASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF 153
             F+   S+            +AD+VE LI+   L    +     + K      + +G+ 
Sbjct: 86  EDFL---SEEELPRDCKNIKPRADIVECLISE--LSQSKDSEAELLLKGIVGFLISAGEK 140

Query: 154 RRD 156
             D
Sbjct: 141 ELD 143


>gi|50237565|gb|AAT71898.1| dsRNA-specific ribonuclease [Rock bream iridovirus]
          Length = 265

 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 79/233 (33%), Gaps = 43/233 (18%)

Query: 18  ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG-------E 70
            N  +     TH S +H    +YE  E LGD I+  ++       F              
Sbjct: 37  KNTQVFHSVFTH-SKAHPVN-NYEWYEKLGDAIIASVMPQYYMERFPKLAHDPSATVART 94

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSS-DLRKDVCSFMTSIQADVVESLIAALYLD 129
           +S    +  S  T S +A+++    ++      +          +  D  E+++ A+ + 
Sbjct: 95  VSQLAITYQSGTTMSTIAQKMGFLKWVVAHRDGVAPASYKEQQRLLEDTFEAMVGAISIT 154

Query: 130 ---------GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT----PEY- 175
                     G      F+   +    ++      D K+ L+E       V      EY 
Sbjct: 155 MDDATGVKCSGHIACYRFLKYAYGLINMRLDGLI-DNKSMLKELIDMHSSVLDSFTFEYT 213

Query: 176 ----KVTFRSGPDHDPRFTV-VVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                +T   G     ++TV  V ++ L        SKR  E+V A +VL + 
Sbjct: 214 NNVMTLTVAHG-----KYTVSEVNVNNL--------SKRELEKVLAGKVLAQL 253


>gi|259488709|tpe|CBF88369.1| TPA: 60S ribosomal protein L3 (AFU_orthologue; AFUA_1G12730)
           [Aspergillus nidulans FGSC A4]
          Length = 406

 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 39/113 (34%), Gaps = 11/113 (9%)

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR------RDAKTELQEWAHAKF 169
           A  V +++ A+YL  G   A  F +++   R L            RD    L +    + 
Sbjct: 262 AAFVRAIMGAIYLHAGRAAAKRFFEQHILSRHLDISSLFNFSLPTRD----LAQLCAREN 317

Query: 170 GVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              P  K+   +G     P F V +        +G   S   A   AA   LK
Sbjct: 318 YEPPVAKIISETGRRSRHPVFVVGIFSGQDKLGEGAGASLPEARSRAAVAALK 370


>gi|242025570|ref|XP_002433197.1| staufen, putative [Pediculus humanus corporis]
 gi|212518738|gb|EEB20459.1| staufen, putative [Pediculus humanus corporis]
          Length = 767

 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +Y++T   GP H   FTV + +           S + A+  AAAE L +
Sbjct: 132 QYRLTNEHGPAHKKSFTVTLTLGTEEY-TADAPSIKKAQHSAAAEALAK 179



 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 1/56 (1%)

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
               +  ++L +    K    P Y +    G      F + V IS L  A G   S
Sbjct: 443 DDNMNPISKLIKIQQVKKEKEPLYTILEERGSSKKKEFLMEVSISNLK-ATGTGPS 497


>gi|67517561|ref|XP_658601.1| hypothetical protein AN0997.2 [Aspergillus nidulans FGSC A4]
 gi|40746409|gb|EAA65565.1| hypothetical protein AN0997.2 [Aspergillus nidulans FGSC A4]
          Length = 464

 Score = 55.9 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 39/113 (34%), Gaps = 11/113 (9%)

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR------RDAKTELQEWAHAKF 169
           A  V +++ A+YL  G   A  F +++   R L            RD    L +    + 
Sbjct: 320 AAFVRAIMGAIYLHAGRAAAKRFFEQHILSRHLDISSLFNFSLPTRD----LAQLCAREN 375

Query: 170 GVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              P  K+   +G     P F V +        +G   S   A   AA   LK
Sbjct: 376 YEPPVAKIISETGRRSRHPVFVVGIFSGQDKLGEGAGASLPEARSRAAVAALK 428


>gi|332022056|gb|EGI62381.1| 39S ribosomal protein L44, mitochondrial [Acromyrmex echinatior]
          Length = 314

 Score = 55.9 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 78/235 (33%), Gaps = 29/235 (12%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQ---------------ESYERLEFLGDRILG 52
              +R+  +F N   LE+A T+ S     +               +    L   G+++  
Sbjct: 68  AFNERLSESF-NMEKLEQAFTNRSYFIQEEQKQKEMGIENPVLDIKDNTELIIKGEKLTS 126

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
            ++   L      A E  +    + L+S E  ++ A  +     I   +  +K       
Sbjct: 127 EIVQAYLVQVLPQASEDVIISLHDYLLSEEILAKAAFHIGTKDIILTEAIAQKT------ 180

Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYW----KQRALKSGKFRRDAKTELQEWAHAK 168
              AD   +L+AAL     +     FV  +      ++ L       +    L +    +
Sbjct: 181 --LADTFFALVAALAESVDVNHTANFVRDFLIVILAEKDLTEIWKPANPVELLNDILRKQ 238

Query: 169 FGVTPEYKVTFRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                E ++  + G +  +  + + +         G   + + A+  AA  VL R
Sbjct: 239 NRSLAEPRLIAQVGENTLEVVYHIALYCDKEFLGSGFGQTIQEAKNTAAINVLSR 293


>gi|242037143|ref|XP_002465966.1| hypothetical protein SORBIDRAFT_01g049110 [Sorghum bicolor]
 gi|241919820|gb|EER92964.1| hypothetical protein SORBIDRAFT_01g049110 [Sorghum bicolor]
          Length = 178

 Score = 55.9 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 6/74 (8%)

Query: 147 ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206
            +           ELQE    +     EYK   R+G       TV V + G+      + 
Sbjct: 1   MVTPDTLPMHPVRELQERCQQQAEGL-EYKA-SRTGN----VATVEVFVDGIQIGVAQNP 54

Query: 207 SKRAAEQVAAAEVL 220
            K+ A+++AA   L
Sbjct: 55  QKKMAQKLAARNAL 68



 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 6/67 (8%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGMD---CSKRAAEQV 214
           L +    +    P+Y+     GP H  RF   V ++        + +     S + A+  
Sbjct: 99  LNDICLRRQWPMPQYRCINEGGPAHAKRFVYAVRVNTSDRGWTDECIGEPMPSVKKAKDS 158

Query: 215 AAAEVLK 221
           AA  +L+
Sbjct: 159 AAVLLLE 165


>gi|194755679|ref|XP_001960111.1| GF13203 [Drosophila ananassae]
 gi|190621409|gb|EDV36933.1| GF13203 [Drosophila ananassae]
          Length = 1036

 Score = 55.9 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 42/88 (47%), Gaps = 4/88 (4%)

Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVV 193
              ++   K++ ++      +  T++ +    +    P +++  ++G +   R  F + V
Sbjct: 707 RKRLNVAIKEKTVELDDAE-NPITKVIQLQQMRKEKEPIFELIAKNGNETSRRREFVMEV 765

Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             SG + A+G   SK+ A++ AA  +L+
Sbjct: 766 TASG-STARGTGNSKKLAKRNAAQALLE 792



 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y++T   GP H   FTV +++             + A+ +AA++ ++
Sbjct: 334 QYRLTGERGPAHCKTFTVTLKLGEEEY-SADGFKIKKAQHLAASKAIE 380



 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           K  +T  +KV    GP H   F     + G    +G    K+ +++ AA ++L
Sbjct: 596 KRSMTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKLSKKRAAEKML 647


>gi|208690889|gb|ACI31220.1| eukaryotic translation initiation factor 2-alpha kinase 2
           [Cercocebus torquatus atys]
          Length = 554

 Score = 55.9 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 6/59 (10%)

Query: 164 WAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            A  K   T  Y+   +   GP+    F    +I       G   SK+ A+Q+AA   L
Sbjct: 108 IAQKKRL-TVNYEQCTSGVHGPEG---FHYKCKIGDKEYGIGTGSSKQEAKQLAAKLAL 162



 Score = 37.0 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           EL ++   + G+T  Y+    +GP HD RFT  V        +    S
Sbjct: 13  ELNKYRQKQ-GITLSYQELPNTGPPHDRRFTFQVVTDRRKFPEAEGRS 59


>gi|27820005|gb|AAL39540.2| LD10028p [Drosophila melanogaster]
          Length = 334

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 80/235 (34%), Gaps = 35/235 (14%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQE---------------SYERLEFLGDRILGLLI 55
           KR+G +F   S L++A T  S +   ++                   L   G +I    +
Sbjct: 85  KRLGESFE-LSELQRAFTEKSFAEREEDRRRQLGIEESDLQMPHNSDLVEKGQQIARAYV 143

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI- 114
              L +         L    + L+S ET + V+  L     I            +  S  
Sbjct: 144 EAFLQHQLPKVPNEGLQAIASYLLSTETLAHVSTHLGTKDLI--------QSTEYPPSAE 195

Query: 115 -QADVVESLIAALYLDGGIEVAGTFVDKYW----KQRALKSGKFRRDAKTELQEWAHAKF 169
            QA  + ++I AL    GIE A  FV  +      Q+ L      ++    L++    + 
Sbjct: 196 SQAKSLHAVIGALASSSGIERAFIFVRDFICTQLNQKDLLEVWTPQEPIQLLEKICQERK 255

Query: 170 GVTPEYKVTFRSGPDHDPR---FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
               E ++    G   +     + V +  +     +G     + A + AA + L+
Sbjct: 256 LGEAEPRLLGDCGK--NTVLAAYQVGIYANRQLLGKGFGEDVKTATETAALDALQ 308


>gi|323347128|gb|EGA81403.1| Mrpl3p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 390

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 69/220 (31%), Gaps = 37/220 (16%)

Query: 39  SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELD------ 92
               L  +G  +L   ++  +   +       L+   N+ +S    + +A+         
Sbjct: 151 DNHGLNIMGKNLLSYHVTKSIIQKYPRLPTVVLNAAVNAYISEAVLAHIAKYWGIEVETT 210

Query: 93  --LASFIRVSSDLRKDVCSFM----------------------TSIQADVVESLIAALYL 128
             L+ ++++       +                          TS  A  V S+IAA++ 
Sbjct: 211 SVLSRYLKM-EPFEFTLGRLKFFNNSLNSKDGIELITGKNFSETSALAMSVRSIIAAIWA 269

Query: 129 ---DGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTPEYKVTFRSGP 183
                  +    F+D +   R L   K  +      EL      +    P  K+   SG 
Sbjct: 270 VTEQKDSQAVYRFIDDHIMSRKLDITKMFQFEQPTRELAMLCRREGLEKPVSKLVAESGR 329

Query: 184 -DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
               P F V V        +G   S + A+  AA + L +
Sbjct: 330 LSKSPVFIVHVFSGEEXLGEGYGSSLKEAKARAATDALMK 369


>gi|332229969|ref|XP_003264158.1| PREDICTED: spermatid perinuclear RNA-binding protein isoform 3
           [Nomascus leucogenys]
          Length = 490

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  G
Sbjct: 217 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 270



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y++   +G  HD RF + VE+ G    +G   +
Sbjct: 330 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 376


>gi|332229967|ref|XP_003264157.1| PREDICTED: spermatid perinuclear RNA-binding protein isoform 2
           [Nomascus leucogenys]
          Length = 658

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  G
Sbjct: 385 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 438



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y++   +G  HD RF + VE+ G    +G   +
Sbjct: 498 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 544


>gi|332229965|ref|XP_003264156.1| PREDICTED: spermatid perinuclear RNA-binding protein isoform 1
           [Nomascus leucogenys]
          Length = 672

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  G
Sbjct: 399 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 452



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y++   +G  HD RF + VE+ G    +G   +
Sbjct: 512 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 558


>gi|327288450|ref|XP_003228939.1| PREDICTED: spermatid perinuclear RNA-binding protein-like [Anolis
           carolinensis]
          Length = 694

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  G
Sbjct: 418 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 471



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y++   +G  HD RF + VE+ G    +G   +
Sbjct: 531 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 577


>gi|326930520|ref|XP_003211394.1| PREDICTED: spermatid perinuclear RNA-binding protein-like
           [Meleagris gallopavo]
          Length = 672

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  G
Sbjct: 398 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 451



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y++   +G  HD RF + VE+ G    +G   +
Sbjct: 511 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 557


>gi|301769247|ref|XP_002920042.1| PREDICTED: spermatid perinuclear RNA-binding protein-like
           [Ailuropoda melanoleuca]
          Length = 672

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  G
Sbjct: 399 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 452



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y++   +G  HD RF + VE+ G    +G   +
Sbjct: 512 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 558


>gi|297270177|ref|XP_001084509.2| PREDICTED: spermatid perinuclear RNA-binding protein isoform 4
           [Macaca mulatta]
          Length = 658

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  G
Sbjct: 385 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 438



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y++   +G  HD RF + VE+ G    +G   +
Sbjct: 498 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 544


>gi|291408373|ref|XP_002720487.1| PREDICTED: spermatid perinuclear RNA binding protein [Oryctolagus
           cuniculus]
          Length = 696

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  G
Sbjct: 423 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 476



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y++   +G  HD RF + VE+ G    +G   +
Sbjct: 536 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 582


>gi|281350170|gb|EFB25754.1| hypothetical protein PANDA_008719 [Ailuropoda melanoleuca]
          Length = 672

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  G
Sbjct: 399 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 452



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y++   +G  HD RF + VE+ G    +G   +
Sbjct: 512 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 558


>gi|224073921|ref|XP_002190904.1| PREDICTED: spermatid perinuclear RNA binding protein [Taeniopygia
           guttata]
          Length = 673

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  G
Sbjct: 398 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 451



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y++   +G  HD RF + VE+ G    +G   +
Sbjct: 512 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 558


>gi|194225808|ref|XP_001500803.2| PREDICTED: spermatid perinuclear RNA binding protein [Equus
           caballus]
          Length = 672

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  G
Sbjct: 399 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 452



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y++   +G  HD RF + VE+ G    +G   +
Sbjct: 512 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 558


>gi|149047906|gb|EDM00522.1| spermatid perinuclear RNA binding protein, isoform CRA_b [Rattus
           norvegicus]
          Length = 648

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  G
Sbjct: 399 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 452



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y++   +G  HD RF + VE+ G    +G   +
Sbjct: 512 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 558


>gi|132626573|ref|NP_445868.2| spermatid perinuclear RNA-binding protein [Rattus norvegicus]
 gi|149047905|gb|EDM00521.1| spermatid perinuclear RNA binding protein, isoform CRA_a [Rattus
           norvegicus]
          Length = 672

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  G
Sbjct: 399 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 452



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y++   +G  HD RF + VE+ G    +G   +
Sbjct: 512 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 558


>gi|126294271|ref|XP_001371295.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 704

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  G
Sbjct: 431 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 484



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y++   +G  HD RF + VE+ G    +G   +
Sbjct: 544 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 590


>gi|119607972|gb|EAW87566.1| spermatid perinuclear RNA binding protein, isoform CRA_d [Homo
           sapiens]
          Length = 648

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  G
Sbjct: 399 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 452



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y++   +G  HD RF + VE+ G    +G   +
Sbjct: 512 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 558


>gi|119607969|gb|EAW87563.1| spermatid perinuclear RNA binding protein, isoform CRA_a [Homo
           sapiens]
          Length = 490

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  G
Sbjct: 217 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 270



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y++   +G  HD RF + VE+ G    +G   +
Sbjct: 330 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 376


>gi|114626614|ref|XP_001139686.1| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]
          Length = 686

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  G
Sbjct: 404 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 457



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y++   +G  HD RF + VE+ G    +G   +
Sbjct: 526 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 572


>gi|114626618|ref|XP_001139454.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes]
          Length = 615

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  G
Sbjct: 399 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 452



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y++   +G  HD RF + VE+ G    +G   +
Sbjct: 512 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 558


>gi|114626612|ref|XP_001139859.1| PREDICTED: hypothetical protein isoform 4 [Pan troglodytes]
          Length = 677

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  G
Sbjct: 404 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 457



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y++   +G  HD RF + VE+ G    +G   +
Sbjct: 517 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 563


>gi|114626620|ref|XP_520244.2| PREDICTED: hypothetical protein isoform 7 [Pan troglodytes]
          Length = 592

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  G
Sbjct: 399 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 452



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y++   +G  HD RF + VE+ G    +G   +
Sbjct: 512 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 558


>gi|114626616|ref|XP_001139781.1| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes]
          Length = 676

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  G
Sbjct: 404 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 457



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y++   +G  HD RF + VE+ G    +G   +
Sbjct: 516 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 562


>gi|297270175|ref|XP_001084032.2| PREDICTED: spermatid perinuclear RNA-binding protein isoform 1
           [Macaca mulatta]
          Length = 672

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  G
Sbjct: 399 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 452



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y++   +G  HD RF + VE+ G    +G   +
Sbjct: 512 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 558


>gi|71897299|ref|NP_001025851.1| spermatid perinuclear RNA-binding protein [Gallus gallus]
 gi|75571231|sp|Q5ZIL4|STRBP_CHICK RecName: Full=Spermatid perinuclear RNA-binding protein
 gi|53135487|emb|CAG32429.1| hypothetical protein RCJMB04_25e3 [Gallus gallus]
          Length = 672

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  G
Sbjct: 398 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 451



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y++   +G  HD RF + VE+ G    +G   +
Sbjct: 511 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 557


>gi|38114853|gb|AAH02693.2| STRBP protein [Homo sapiens]
          Length = 615

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  G
Sbjct: 342 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 395



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y++   +G  HD RF + VE+ G    +G   +
Sbjct: 455 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 501


>gi|26347661|dbj|BAC37479.1| unnamed protein product [Mus musculus]
          Length = 300

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  G
Sbjct: 27  RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 80



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y++   +G  HD RF + VE+ G    +G   +
Sbjct: 140 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 186


>gi|114842377|ref|NP_033287.2| spermatid perinuclear RNA-binding protein [Mus musculus]
 gi|81879604|sp|Q91WM1|STRBP_MOUSE RecName: Full=Spermatid perinuclear RNA-binding protein
 gi|15928464|gb|AAH14710.1| Spermatid perinuclear RNA binding protein [Mus musculus]
 gi|123229640|emb|CAM21472.1| spermatid perinuclear RNA binding protein [Mus musculus]
 gi|148676766|gb|EDL08713.1| spermatid perinuclear RNA binding protein, isoform CRA_a [Mus
           musculus]
          Length = 672

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  G
Sbjct: 399 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 452



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y++   +G  HD RF + VE+ G    +G   +
Sbjct: 512 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 558


>gi|13377630|gb|AAK20832.1|AF333337_1 spermatid perinuclear RNA-binding protein [Homo sapiens]
          Length = 673

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  G
Sbjct: 400 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 453



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y++   +G  HD RF + VE+ G    +G   +
Sbjct: 513 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 559


>gi|81872622|sp|Q9JKU6|STRBP_RAT RecName: Full=Spermatid perinuclear RNA-binding protein; AltName:
           Full=74 kDa double-stranded RNA-binding protein;
           Short=p74
 gi|7329162|gb|AAF59924.1|AF226864_1 double-stranded RNA-binding protein p74 [Rattus norvegicus]
          Length = 671

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  G
Sbjct: 399 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 452



 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +Y++   +G  HD RF + VE+ G    +G   +K+ A++V     L++ 
Sbjct: 527 KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPNKKVAKEV--QRTLEKL 573


>gi|80478568|gb|AAI08732.1| STRBP protein [Homo sapiens]
          Length = 589

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  G
Sbjct: 399 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 452



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y++   +G  HD RF + VE+ G    +G   +
Sbjct: 512 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 558


>gi|115496278|ref|NP_001069207.1| spermatid perinuclear RNA-binding protein [Bos taurus]
 gi|122132446|sp|Q08E27|STRBP_BOVIN RecName: Full=Spermatid perinuclear RNA-binding protein
 gi|115305044|gb|AAI23454.1| Spermatid perinuclear RNA binding protein [Bos taurus]
 gi|296482172|gb|DAA24287.1| spermatid perinuclear RNA-binding protein [Bos taurus]
          Length = 672

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  G
Sbjct: 399 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 452



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y++   +G  HD RF + VE+ G    +G   +
Sbjct: 512 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 558


>gi|73968135|ref|XP_863842.1| PREDICTED: similar to spermatid perinuclear RNA-binding protein
           isoform 8 [Canis familiaris]
          Length = 640

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  G
Sbjct: 367 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 420



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y++   +G  HD RF + VE+ G    +G   +
Sbjct: 480 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 526


>gi|73968131|ref|XP_863799.1| PREDICTED: similar to spermatid perinuclear RNA-binding protein
           isoform 6 [Canis familiaris]
          Length = 656

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  G
Sbjct: 383 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 436



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y++   +G  HD RF + VE+ G    +G   +
Sbjct: 496 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 542


>gi|73968127|ref|XP_863753.1| PREDICTED: similar to spermatid perinuclear RNA-binding protein
           isoform 4 [Canis familiaris]
          Length = 678

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  G
Sbjct: 404 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 457



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y++   +G  HD RF + VE+ G    +G   +
Sbjct: 518 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 564


>gi|73968122|ref|XP_863686.1| PREDICTED: similar to spermatid perinuclear RNA-binding protein
           isoform 2 [Canis familiaris]
          Length = 648

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  G
Sbjct: 399 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 452



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y++   +G  HD RF + VE+ G    +G   +
Sbjct: 512 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 558


>gi|73968137|ref|XP_863863.1| PREDICTED: similar to spermatid perinuclear RNA-binding protein
           isoform 9 [Canis familiaris]
          Length = 490

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  G
Sbjct: 217 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 270



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y++   +G  HD RF + VE+ G    +G   +
Sbjct: 330 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 376


>gi|73968139|ref|XP_863888.1| PREDICTED: similar to spermatid perinuclear RNA-binding protein
           isoform 10 [Canis familiaris]
          Length = 676

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  G
Sbjct: 403 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 456



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y++   +G  HD RF + VE+ G    +G   +
Sbjct: 516 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 562


>gi|73968125|ref|XP_863730.1| PREDICTED: similar to spermatid perinuclear RNA-binding protein
           isoform 3 [Canis familiaris]
          Length = 678

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  G
Sbjct: 410 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 463



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y++   +G  HD RF + VE+ G    +G   +
Sbjct: 518 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 564


>gi|73968129|ref|XP_863778.1| PREDICTED: similar to spermatid perinuclear RNA-binding protein
           isoform 5 [Canis familiaris]
          Length = 615

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  G
Sbjct: 399 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 452



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y++   +G  HD RF + VE+ G    +G   +
Sbjct: 512 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 558


>gi|57092117|ref|XP_537853.1| PREDICTED: similar to spermatid perinuclear RNA-binding protein
           isoform 1 [Canis familiaris]
          Length = 672

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  G
Sbjct: 399 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 452



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y++   +G  HD RF + VE+ G    +G   +
Sbjct: 512 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 558


>gi|197099302|ref|NP_001126458.1| spermatid perinuclear RNA-binding protein [Pongo abelii]
 gi|75054828|sp|Q5R6Y5|STRBP_PONAB RecName: Full=Spermatid perinuclear RNA-binding protein
 gi|55731530|emb|CAH92475.1| hypothetical protein [Pongo abelii]
          Length = 672

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  G
Sbjct: 399 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 452



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y++   +G  HD RF + VE+ G    +G   +
Sbjct: 512 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 558


>gi|673454|emb|CAA59167.1| spermatid perinuclear RNA binding protein [Mus musculus]
 gi|148676767|gb|EDL08714.1| spermatid perinuclear RNA binding protein, isoform CRA_b [Mus
           musculus]
          Length = 648

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  G
Sbjct: 399 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 452



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y++   +G  HD RF + VE+ G    +G   +
Sbjct: 512 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 558


>gi|283806705|ref|NP_001164608.1| spermatid perinuclear RNA-binding protein isoform 2 [Homo sapiens]
 gi|114626610|ref|XP_001139946.1| PREDICTED: spermatid perinuclear RNA-binding protein isoform 5 [Pan
           troglodytes]
 gi|296190783|ref|XP_002743339.1| PREDICTED: spermatid perinuclear RNA-binding protein isoform 2
           [Callithrix jacchus]
 gi|12053237|emb|CAB66800.1| hypothetical protein [Homo sapiens]
 gi|55664365|emb|CAH70299.1| spermatid perinuclear RNA binding protein [Homo sapiens]
 gi|119607971|gb|EAW87565.1| spermatid perinuclear RNA binding protein, isoform CRA_c [Homo
           sapiens]
          Length = 658

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  G
Sbjct: 385 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 438



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y++   +G  HD RF + VE+ G    +G   +
Sbjct: 498 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 544


>gi|7023885|dbj|BAA92120.1| spermatid perinuclear RNA-binding protein. [Homo sapiens]
          Length = 490

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  G
Sbjct: 217 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 270



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y++   +G  HD RF + VE+ G    +G   +
Sbjct: 330 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 376


>gi|21361745|ref|NP_060857.2| spermatid perinuclear RNA-binding protein isoform 1 [Homo sapiens]
 gi|114626608|ref|XP_001140028.1| PREDICTED: hypothetical protein isoform 6 [Pan troglodytes]
 gi|296190781|ref|XP_002743338.1| PREDICTED: spermatid perinuclear RNA-binding protein isoform 1
           [Callithrix jacchus]
 gi|332832824|ref|XP_003312319.1| PREDICTED: spermatid perinuclear RNA-binding protein [Pan
           troglodytes]
 gi|74752134|sp|Q96SI9|STRBP_HUMAN RecName: Full=Spermatid perinuclear RNA-binding protein
 gi|14042893|dbj|BAB55434.1| unnamed protein product [Homo sapiens]
 gi|17389385|gb|AAH17732.1| Spermatid perinuclear RNA binding protein [Homo sapiens]
 gi|55664366|emb|CAH70300.1| spermatid perinuclear RNA binding protein [Homo sapiens]
 gi|117644880|emb|CAL37906.1| hypothetical protein [synthetic construct]
 gi|119607970|gb|EAW87564.1| spermatid perinuclear RNA binding protein, isoform CRA_b [Homo
           sapiens]
 gi|168278000|dbj|BAG10978.1| spermatid perinuclear RNA-binding protein [synthetic construct]
          Length = 672

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  G
Sbjct: 399 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 452



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y++   +G  HD RF + VE+ G    +G   +
Sbjct: 512 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 558


>gi|10436629|dbj|BAB14873.1| unnamed protein product [Homo sapiens]
          Length = 405

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
               +YK+  +SGP H P FT+ V++ G    +    SK+ A+   A +VL+  G
Sbjct: 132 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMG 185



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y++   +G  HD RF + VE+ G    +G   +
Sbjct: 245 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 291


>gi|255931063|ref|XP_002557088.1| Pc12g01930 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211581707|emb|CAP79820.1| Pc12g01930 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 153

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 47/126 (37%), Gaps = 11/126 (8%)

Query: 9   LEKR-IG--YAFANRSLLEKALTHSS-ISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
            EK  +G  Y F +R+ + +AL   S  +H  Q++   L  +GD IL   +         
Sbjct: 15  FEKLVLGQAYRFTDRAFIREALQGPSIYNHDGQKT---LALVGDAILRQSLVEQGRER-- 69

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           S    E+      + S          L L  FI  +           T   A  +E++I 
Sbjct: 70  SETPEEIQNVITKVASNINLYYRGIALGLDPFIVKNPGQLGITAGRKT--MATTMEAIIG 127

Query: 125 ALYLDG 130
           A++ D 
Sbjct: 128 AVFYDS 133


>gi|242083576|ref|XP_002442213.1| hypothetical protein SORBIDRAFT_08g016430 [Sorghum bicolor]
 gi|241942906|gb|EES16051.1| hypothetical protein SORBIDRAFT_08g016430 [Sorghum bicolor]
          Length = 198

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 3/64 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215
            K  +QE A  +    P Y     +  ++   +   V+I G    +G    SK+ AE  A
Sbjct: 118 YKNFIQEIAQKEGISLPVYNTVPTN-KENSTAYKSSVQIKGE-IFEGEPGTSKKQAEMNA 175

Query: 216 AAEV 219
           A   
Sbjct: 176 AKIA 179



 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
            K+  +R     + + D KT+L  +A     V P YK     GP H PRF   V I G  
Sbjct: 19  KKWKARRDHVVKESKTDFKTQLSVYAQKLSKVPPLYKHIQE-GPAHAPRFNAEVTIDGQT 77

Query: 200 PAQ 202
             +
Sbjct: 78  FGR 80


>gi|93278802|pdb|2B7V|A Chain A, Structure Of Adar2 Dsrbm2
 gi|310689630|pdb|2L2K|B Chain B, Solution Nmr Structure Of The RG STEM LOOP RNA-Adar2
           Dsrbm2 Complex
          Length = 71

 Score = 55.5 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +     +Y     SG  H   F + V + G    +G   +K+ A+  AA   L
Sbjct: 12  ELRPGLKYDFLSESGESHAKSFVMSVVVDGQ-FFEGSGRNKKLAKARAAQSAL 63


>gi|242014706|ref|XP_002428026.1| Double-stranded RNA-specific editase Adar, putative [Pediculus
           humanus corporis]
 gi|212512545|gb|EEB15288.1| Double-stranded RNA-specific editase Adar, putative [Pediculus
           humanus corporis]
          Length = 669

 Score = 55.5 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           EYK + ++GP + P FT  V+I+G+    G   +K+ A+  AA   L
Sbjct: 59  EYKFSVQNGPGNSPIFTTTVDINGVRY-IGRGKNKKLAKHNAAEAAL 104


>gi|145301789|gb|ABP52434.1| double-stranded RNA-binding protein [Vaccinia virus]
          Length = 189

 Score = 55.5 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%)

Query: 147 ALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201
            +   K   D K     T + E+          +++    GP + P F   V+I G    
Sbjct: 102 DVIPAKKIIDWKDANPVTVINEYCQITKRDW-SFRIESV-GPSNSPTFYACVDIDGRVFD 159

Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223
           +    SKR A+  AA   + + 
Sbjct: 160 KADGKSKRDAKNNAAKLAVDKL 181


>gi|56713422|gb|AAW23462.1| double-stranded RNA-specific adenosine [Vaccinia virus]
 gi|56713706|gb|AAW23744.1| double-stranded RNA-specific adenosine [Vaccinia virus]
          Length = 190

 Score = 55.5 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%)

Query: 147 ALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201
            +   K   D K     T + E+          +++    GP + P F   V+I G    
Sbjct: 103 DVIPAKKIIDWKDANPVTVINEYCQITKRDW-SFRIESV-GPSNSPTFYACVDIDGRVFD 160

Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223
           +    SKR A+  AA   + + 
Sbjct: 161 KADGKSKRDAKNNAAKLAVDKL 182


>gi|167412541|gb|ABZ79975.1| double-stranded RNA binding protein [Vaccinia virus GLV-1h68]
          Length = 190

 Score = 55.5 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%)

Query: 147 ALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201
            +   K   D K     T + E+          +++    GP + P F   V+I G    
Sbjct: 103 DVIPAKKIIDWKDANPVTVINEYCQITRRDW-SFRIESV-GPSNSPTFYACVDIDGRVFD 160

Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223
           +    SKR A+  AA   + + 
Sbjct: 161 KADGKSKRDAKNNAAKLAVDKL 182


>gi|88854099|gb|ABD52517.1| double-stranded RNA-specific adenosine deaminase-like protein p25
           [Vaccinia virus]
          Length = 190

 Score = 55.5 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%)

Query: 147 ALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201
            +   K   D K     T + E+          +++    GP + P F   V+I G    
Sbjct: 103 DVIPAKKIIDWKDANPVTVINEYCQITRRDW-SFRIESV-GPSNSPTFYACVDIDGRVFD 160

Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223
           +    SKR A+  AA   + + 
Sbjct: 161 KADGKSKRDAKNNAAKLAVDKL 182


>gi|104642088|gb|ABF73314.1| double-stranded RNA-binding protein [Vaccinia virus]
          Length = 189

 Score = 55.5 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%)

Query: 147 ALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201
            +   K   D K     T + E+          +++    GP + P F   V+I G    
Sbjct: 102 DVIPAKKIIDWKGANPVTVINEYCQITRRDW-SFRIESV-GPSNSPTFYACVDIDGRVFD 159

Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223
           +    SKR A+  AA   + + 
Sbjct: 160 KADGKSKRDAKNNAAKLAVDKL 181


>gi|77434212|gb|ABA82143.1| double-stranded RNA-binding protein [Vaccinia virus]
 gi|77434276|gb|ABA82145.1| double-stranded RNA-binding protein [Vaccinia virus]
 gi|77434313|gb|ABA82146.1| double-stranded RNA-binding protein [Vaccinia virus]
 gi|77434422|gb|ABA82148.1| double-stranded RNA-binding protein [Vaccinia virus]
 gi|82408803|gb|ABB73195.1| double-stranded RNA-binding protein [Vaccinia virus]
 gi|317018624|gb|ADU86890.1| E3L [Vaccinia virus]
          Length = 179

 Score = 55.5 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%)

Query: 147 ALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201
            +   K   D K     T + E+          +++    GP + P F   V+I G    
Sbjct: 97  DVIPAKKIIDWKGANPVTVINEYCQITRRDW-SFRIESV-GPSNSPTFYACVDIDGRVFD 154

Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223
           +    SKR A+  AA   + + 
Sbjct: 155 KADGKSKRDAKNNAAKLAVDKL 176


>gi|67937802|gb|AAY83357.1| putative double-stranded RNA binding protein [Vaccinia virus]
          Length = 190

 Score = 55.5 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%)

Query: 147 ALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201
            +   K   D K     T + E+          +++    GP + P F   V+I G    
Sbjct: 103 DVIPAKKIIDWKGANPVTVINEYCQITRRDW-SFRIESV-GPSNSPTFYACVDIDGRVFD 160

Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223
           +    SKR A+  AA   + + 
Sbjct: 161 KADGKSKRDAKNNAAKLAVDKL 182


>gi|44971411|gb|AAS49761.1| RPXV048 [Rabbitpox virus]
          Length = 190

 Score = 55.5 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%)

Query: 147 ALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201
            +   K   D K     T + E+          +++    GP + P F   V+I G    
Sbjct: 103 DVIPAKKIIDWKGANPVTVINEYCQITRRDW-SFRIESV-GPSNSPTFYACVDIDGRVFD 160

Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223
           +    SKR A+  AA   + + 
Sbjct: 161 KADGKSKRDAKNNAAKLAVDKL 182


>gi|400554|gb|AAA02759.1| double-stranded RNA-binding protein [Vaccinia virus]
          Length = 190

 Score = 55.5 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%)

Query: 147 ALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201
            +   K   D K     T + E+          +++    GP + P F   V+I G    
Sbjct: 103 DVIPAKKIIDWKGANPVTVINEYCQITRRDW-SFRIESV-GPSNSPTFYACVDIDGRVFD 160

Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223
           +    SKR A+  AA   + + 
Sbjct: 161 KADGKSKRDAKNNAAKLAVDKL 182


>gi|66275856|ref|YP_232941.1| double-stranded RNA binding protein [Vaccinia virus]
 gi|137622|sp|P21605|VE03_VACCV RecName: Full=Protein E3; AltName: Full=p25
 gi|335750|gb|AAB59823.1| ORF2 [Vaccinia virus]
 gi|29692165|gb|AAO89338.1| double-stranded RNA binding protein [Vaccinia virus WR]
          Length = 190

 Score = 55.5 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%)

Query: 147 ALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201
            +   K   D K     T + E+          +++    GP + P F   V+I G    
Sbjct: 103 DVIPAKKIIDWKGANPVTVINEYCQITRRDW-SFRIESV-GPSNSPTFYACVDIDGRVFD 160

Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223
           +    SKR A+  AA   + + 
Sbjct: 161 KADGKSKRDAKNNAAKLAVDKL 182


>gi|256600044|gb|ACV04762.1| Dicer [Patiria miniata]
          Length = 663

 Score = 55.5 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 30/61 (49%)

Query: 39  SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
           + ERLE LGD  L   ++  L+  +    EG+LS   +  VS     ++ +  D+   ++
Sbjct: 375 NLERLEMLGDSFLKQAVTIYLYCTYPRRHEGKLSYMRSKQVSNFNLYRLGKRKDIGRKMQ 434

Query: 99  V 99
           V
Sbjct: 435 V 435


>gi|301628882|ref|XP_002943575.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-specific
           adenosine deaminase-like [Xenopus (Silurana) tropicalis]
          Length = 1170

 Score = 55.5 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 30/57 (52%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +K G   E+++  + GP HDP+FT  V I        +  SK+ A+Q+AA   ++  
Sbjct: 587 SKSGSMCEFQLVSQEGPPHDPKFTYTVRIGNQTFPPVVANSKKMAKQLAAEAAVREL 643



 Score = 41.2 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 14/80 (17%)

Query: 132 IEVAGTF--VDKYWKQRALKSGKFRRDAKTELQEWAH--AKFGVTPEYKVTFRSGPDHDP 187
            E    F  ++K    R        ++  + L E+ H  ++     ++ +  +SGP HDP
Sbjct: 444 YEPVKEFNRLEKLLACR-------EKNPVSGLLEFTHYCSQHC---DFVLLNQSGPSHDP 493

Query: 188 RFTVVVEISGLAPAQGMDCS 207
           RF +   I G +       S
Sbjct: 494 RFKIQAVIDGRSFPVAEASS 513



 Score = 40.4 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
           +  + L E+A AK     E+K+  ++GP HDP+F    ++ G 
Sbjct: 694 NPVSGLLEYARAKGFAA-EFKMVNQTGPPHDPKFVFQAKVGGR 735


>gi|113195237|ref|YP_717367.1| double-stranded RNA binding protein [Taterapox virus]
 gi|90660513|gb|ABD97626.1| double-stranded RNA binding protein [Taterapox virus]
          Length = 190

 Score = 55.5 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%)

Query: 147 ALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201
            +   K   D K     T + E+          +++    GP + P F   V+I G    
Sbjct: 103 DVIPAKKIIDWKNANPVTIINEYCQITKRDW-SFRIESV-GPSNSPIFYACVDIDGRVFD 160

Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223
           +    SKR A+  AA   + + 
Sbjct: 161 KADGKSKRDAKNNAAKLAVDKL 182


>gi|156554791|ref|XP_001606035.1| PREDICTED: similar to staufen [Nasonia vitripennis]
          Length = 587

 Score = 55.5 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 1/72 (1%)

Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
              +  Y + R         +  + L +   AK    P Y +    G      F + V +
Sbjct: 284 RNLIKVYQEPRTEADSSEEVNPISRLVQIQQAKREREPVYNLVEEKGAPRRREFVMEVSV 343

Query: 196 SGLAPAQGMDCS 207
            G   AQG   +
Sbjct: 344 -GQHSAQGTGPN 354



 Score = 52.4 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           K G++  + V   +G  H   F     +       G   SK+ +++ AA  +L+  
Sbjct: 201 KRGLSVSFDVVSETGKPHIRTFMTRCTVGDKV-TLGEGSSKKVSKKRAAELMLEEL 255


>gi|302788362|ref|XP_002975950.1| hypothetical protein SELMODRAFT_104739 [Selaginella moellendorffii]
 gi|300156226|gb|EFJ22855.1| hypothetical protein SELMODRAFT_104739 [Selaginella moellendorffii]
          Length = 479

 Score = 55.5 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 47/140 (33%), Gaps = 6/140 (4%)

Query: 23  LEKALTHSS-ISHSYQE-SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
           L+    H S   + +    YERLEF+G +I  ++++  L      A    L+     +  
Sbjct: 323 LQLCFMHPSAYKNDHPRFCYERLEFIGSKIQDVVMAERLLMKHLDAPAIFLNRIHRGITI 382

Query: 81  AETCSQVARELDLASFIRVSSD---LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137
              C +  R   L  FI    +                +   ++L    Y+  G      
Sbjct: 383 NRICGRRLRMKRLHKFITYGEERQLEFARCHRLRNFTHSATQQALHGLGYIVYGKAEVRR 442

Query: 138 FVDKYWK-QRALKSGKFRRD 156
            +   ++ ++ L +     D
Sbjct: 443 LMFDVFEFEKPLPTQADFND 462



 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 54/146 (36%), Gaps = 21/146 (14%)

Query: 23  LEKALTHS-SIS-----HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFN 76
           L  A  H  S       H+    Y RL FLG+ +L L ++ LL   +       L  R  
Sbjct: 93  LYLAFQHEESYRAKRMRHTRVGHY-RLAFLGEFVLDLAMAELLLQMYPRDTPASLRERAF 151

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD--VVESLIAALYLDGGIEV 134
           ++ +     ++  +  L   +    D    VC F         V  +LIAA+YL  G+  
Sbjct: 152 AVTNKRGLERILSDAGLHQ-LAFPEDENFHVCLFS---LPCRSVFLALIAAVYLSLGMSE 207

Query: 135 AGTFVDKYWKQRALKSGKFRRDAKTE 160
               + + +         F  DAK+ 
Sbjct: 208 VYKLLFETF--------AFDLDAKSA 225


>gi|76155250|gb|AAX26507.2| SJCHGC08817 protein [Schistosoma japonicum]
          Length = 167

 Score = 55.5 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 40/116 (34%), Gaps = 12/116 (10%)

Query: 110 FMTSIQADVVESLIAALYLDGGI--EVAGTFVDKYWKQRALK-SGKFRRDAKTELQEWA- 165
            +     D+ ESL  A++LD     +          K+R  + +    +    +L E   
Sbjct: 39  EIPKALGDIFESLAGAIFLDSNFSLDTVWQVFYPIMKERIERYTACIPKSPVRQLLELEP 98

Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
                  P   V        D R +V   + G     G+  + R A+ +AA   L+
Sbjct: 99  EGTKFERPRRMV--------DGRISVCAHVLGKGRFYGVGRNYRLAKSLAAKRALR 146


>gi|116326694|ref|YP_803231.1| ribonuclease III [Trichoplusia ni ascovirus 2c]
 gi|102231702|gb|ABF70525.1| ribonuclease III [Trichoplusia ni ascovirus 2c]
          Length = 678

 Score = 55.1 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 41/120 (34%), Gaps = 31/120 (25%)

Query: 39  SYERLEFLGDRILGLLISTLLFNHF-----DSAKEGELSVRFNSLVSAETCSQVARELDL 93
           +YE  E++GD I+   I   + + +      S   G ++   +  V     S+ +  + L
Sbjct: 157 NYEFFEYIGDAIINRYIIEYIRHKYVGIANTSHNIGIMTKLRSVFVGKRNLSKCSIRIGL 216

Query: 94  ASFIRV------------------SSDLRKDV--------CSFMTSIQADVVESLIAALY 127
             F+                    S +             C  + S+  D++ES I  L+
Sbjct: 217 HKFLNCAFPLDMVRLEQYAQTIHDSPNEIDTQFDEPNFALCRELESLMEDLLESFIGVLW 276


>gi|29292938|dbj|BAC66440.1| double stranded RNA-dependent protein kinase [Bos taurus]
          Length = 533

 Score = 55.1 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 2/75 (2%)

Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           +  G    +    L   +  K      Y+     G D    F  + +I       G+  +
Sbjct: 92  IPEGPPIENYIGRLNTISQKKNLC-VTYEECKSKG-DGPEGFHYICKIGQEEYGSGVGST 149

Query: 208 KRAAEQVAAAEVLKR 222
           K+ A+Q+AA    ++
Sbjct: 150 KQEAKQLAAKLAYEK 164



 Score = 45.8 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 17/42 (40%)

Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             K GV   Y    ++GP H+ RFT  V I      +    S
Sbjct: 18  QQKNGVEVRYCELAKTGPPHNFRFTYQVIIDDKEYPKAEGRS 59


>gi|302770230|ref|XP_002968534.1| hypothetical protein SELMODRAFT_145591 [Selaginella moellendorffii]
 gi|300164178|gb|EFJ30788.1| hypothetical protein SELMODRAFT_145591 [Selaginella moellendorffii]
          Length = 473

 Score = 55.1 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 47/140 (33%), Gaps = 6/140 (4%)

Query: 23  LEKALTHSS-ISHSYQE-SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
           L+    H S   + +    YERLEF+G +I  ++++  L      A    L+     +  
Sbjct: 317 LQLCFMHPSAYKNDHPRFCYERLEFIGSKIQDVVMAERLLMKHLDAPAIFLNRIHRGITI 376

Query: 81  AETCSQVARELDLASFIRVSSD---LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137
              C +  R   L  FI    +                +   ++L    Y+  G      
Sbjct: 377 NRICGRRLRMKRLHKFITYGEERQLEFARCHRLRNFTHSATQQALHGLGYIVYGKAEVRR 436

Query: 138 FVDKYWK-QRALKSGKFRRD 156
            +   ++ ++ L +     D
Sbjct: 437 LMFDVFEFEKPLPTQADFND 456



 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 53/145 (36%), Gaps = 19/145 (13%)

Query: 23  LEKALTHS-SIS----HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
           L  A  H  S         +  + RL FLG+ +L L ++ LL   +       L  R  +
Sbjct: 87  LYLAFQHEESYRAKRMRHTRVGHYRLAFLGEFVLDLAMAELLLQMYPRDTPASLRERAFA 146

Query: 78  LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD--VVESLIAALYLDGGIEVA 135
           + +     ++  +  L   +    D    VC F         V  +LIAA+YL  G+   
Sbjct: 147 VTNKRGLERILSDAGLHQ-LAFPEDENFHVCLFS---LPCRSVFLALIAAVYLSLGMSEV 202

Query: 136 GTFVDKYWKQRALKSGKFRRDAKTE 160
              + + +         F  DAK+ 
Sbjct: 203 YKLLFETF--------AFDLDAKSA 219


>gi|298256111|gb|ADI71334.1| RNase III-like protein [Bohle iridovirus]
          Length = 225

 Score = 55.1 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 62/192 (32%), Gaps = 25/192 (13%)

Query: 50  ILGLLISTLLFNHFDSAKEG----ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK 105
           +      +     F           ++       S ++ S +A  L    FIR  S    
Sbjct: 2   VASYFFPSYFLKRFPQLNSPKGVKTVARLKIYYGSKKSFSSIADSLGFWKFIR--SGPVP 59

Query: 106 DVCSFMTSIQADVVESLIAA--------LYLDG-GIEVAGTFVDKYWKQRALKSG-KFRR 155
              S   S+  D  E+ + A          +DG G  VA   +   +    +        
Sbjct: 60  VNPSTRESLLEDTFEAFLGAVCMAVDDEYSIDGLGAVVAYKIMADIFDDMDISLEYTALF 119

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA-AEQV 214
           D  T L+E    K  V     V    G       T V+ + G    +     KR  A++ 
Sbjct: 120 DTVTRLKELMDVKKDVLGGDVVYNHRGD------TTVITLKGRVIGKATGAIKRDRAKEA 173

Query: 215 A--AAEVLKREG 224
           A  A ++L+REG
Sbjct: 174 AGQALDLLRREG 185


>gi|117935051|ref|NP_835210.2| interferon-induced, double-stranded RNA-activated protein kinase
           [Bos taurus]
 gi|117306699|gb|AAI26647.1| Eukaryotic translation initiation factor 2-alpha kinase 2 [Bos
           taurus]
 gi|296482562|gb|DAA24677.1| protein kinase, interferon-inducible double stranded RNA dependent
           [Bos taurus]
          Length = 533

 Score = 55.1 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 2/75 (2%)

Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           +  G    +    L   +  K      Y+     G D    F  + +I       G+  +
Sbjct: 92  IPEGPPIENYIGRLNTISQKKNLC-VTYEECKSKG-DGPEGFHYICKIGQEEYGSGVGST 149

Query: 208 KRAAEQVAAAEVLKR 222
           K+ A+Q+AA    ++
Sbjct: 150 KQEAKQLAAKLAYEK 164



 Score = 45.8 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 17/42 (40%)

Query: 166 HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             K GV   Y    ++GP H+ RFT  V I      +    S
Sbjct: 18  QQKNGVEVRYCELAKTGPPHNFRFTYQVIIDDKEYPKAEGRS 59


>gi|298256127|gb|ADI71342.1| RNase III-like protein [Short-finned eel ranavirus]
          Length = 225

 Score = 55.1 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 60/194 (30%), Gaps = 25/194 (12%)

Query: 50  ILGLLISTLLFNHFDSAKEG----ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK 105
           +      +     F           ++       S ++ S +A  L    FIR  S    
Sbjct: 2   VASYFFPSYFLKRFPQLNSPKGVKTVARLKIYYGSKKSFSSIANSLGFWKFIR--SGPVP 59

Query: 106 DVCSFMTSIQADVVESLIAALYL----DGGIEVAGTFVDKYWKQRALKSGKFRRDA---- 157
              S   S+  D  E+ + A+      +  I+  G  V                D     
Sbjct: 60  VNPSARESLLEDTFEAFLGAVCTAVDDEYSIDGLGAVVSYKIMADIFDDMDISLDYTALF 119

Query: 158 --KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA-AEQV 214
              T L+E    K  V     V    G       T V+ + G    +     KR  A++ 
Sbjct: 120 DTVTRLKELMDVKKDVLGGDAVYDHRGD------TTVITLKGRVIGKATGAIKRDRAKEA 173

Query: 215 A--AAEVLKREGIW 226
           A  A ++L+REG +
Sbjct: 174 AGQALDLLRREGYF 187


>gi|293334879|ref|NP_001167729.1| hypothetical protein LOC100381417 [Zea mays]
 gi|223943645|gb|ACN25906.1| unknown [Zea mays]
          Length = 178

 Score = 55.1 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 6/74 (8%)

Query: 147 ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206
            +           ELQE    +     EYK   R+G       TV V + G+      + 
Sbjct: 1   MVTPDTLPMHPVRELQERCQQQAEGL-EYKA-SRTGN----VATVEVLVDGIQIGVAQNP 54

Query: 207 SKRAAEQVAAAEVL 220
            K+ A+++AA   L
Sbjct: 55  QKKMAQKLAARNAL 68



 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 6/67 (8%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGMD---CSKRAAEQV 214
           L +    +    P+Y+     GP H  RF   V ++        + +     S + A+  
Sbjct: 99  LNDICLRRQWPMPQYRCINEGGPAHAKRFVYAVRVNTSDSGWTDECIGEPMPSVKKAKDS 158

Query: 215 AAAEVLK 221
           AA  +L+
Sbjct: 159 AAVLLLE 165


>gi|47227705|emb|CAG09702.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 842

 Score = 55.1 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+E   L E+      V P Y       P  +P F   V I G+    G   SK+ A+
Sbjct: 552 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVIIDGVTYGTGTASSKKLAK 609

Query: 213 QVAAAEVLK 221
             AA   L+
Sbjct: 610 NKAARATLE 618


>gi|221109699|ref|XP_002169974.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 349

 Score = 55.1 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 5/69 (7%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVA 215
            K  LQE+       TP YKV   SGP     +   V  +  L          + AE  A
Sbjct: 144 YKNSLQEYCQKSRLPTPSYKVVL-SGPG---MYIGNVTFNNTLVHGTVAYRIIKEAENNA 199

Query: 216 AAEVLKREG 224
           A E LK+ G
Sbjct: 200 AFEALKQLG 208



 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 39/97 (40%), Gaps = 15/97 (15%)

Query: 125 ALYL-DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP 183
           ++Y+   G++ +    D ++ ++           K++L E A  +   TP Y+  + +G 
Sbjct: 214 SIYIPIAGVKRSNDTQDPWYSKK--PKPALCSSFKSKLNELAQKRHLGTPTYQTIYSAGG 271

Query: 184 DHDPRFTVVVEISGLAPAQGMDCS----KRAAEQVAA 216
                +   V  +G         S    K+ AEQ AA
Sbjct: 272 -----YLSTVVFNGREF---KGMSPCMKKKDAEQNAA 300


>gi|28502787|gb|AAH47175.1| Ilf3 protein [Danio rerio]
          Length = 612

 Score = 55.1 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G    +    SKR A+   A +VL+  G+ T
Sbjct: 415 QLKPGLQYKLISQTGPVHVPVFTMSVEVDGKN-FEASGPSKRTAKLHVAVKVLQDMGLPT 473



 Score = 48.9 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VEI G    QG   +
Sbjct: 524 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEIDGQK-FQGTGSN 575


>gi|47086831|ref|NP_997764.1| interleukin enhancer-binding factor 3 homolog [Danio rerio]
 gi|45501209|gb|AAH67172.1| Interleukin enhancer binding factor 3 [Danio rerio]
          Length = 833

 Score = 55.1 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G    +    SKR A+   A +VL+  G+ T
Sbjct: 415 QLKPGLQYKLISQTGPVHVPVFTMSVEVDGKN-FEASGPSKRTAKLHVAVKVLQDMGLPT 473



 Score = 48.9 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VEI G    QG   +
Sbjct: 524 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEIDGQK-FQGTGSN 575


>gi|62510785|sp|Q6NXA4|ILF3_DANRE RecName: Full=Interleukin enhancer-binding factor 3 homolog
          Length = 833

 Score = 55.1 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G    +    SKR A+   A +VL+  G+ T
Sbjct: 415 QLKPGLQYKLISQTGPVHVPVFTMSVEVDGKN-FEASGPSKRTAKLHVAVKVLQDMGLPT 473



 Score = 48.9 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VEI G    QG   +
Sbjct: 524 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEIDGQK-FQGTGSN 575


>gi|171688648|ref|XP_001909264.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944286|emb|CAP70396.1| unnamed protein product [Podospora anserina S mat+]
          Length = 432

 Score = 55.1 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 38/113 (33%), Gaps = 3/113 (2%)

Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKF 169
               A+   +++ A+Y   G   A +FV  +   R L   +    +    EL      + 
Sbjct: 259 EKAHANFARAVVGAVYTHCGRAAAKSFVKAHVLCRELDLERLFAFKHPTLELAMLCAREE 318

Query: 170 GVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              P  ++   +G     P F V V        +G   +   A   AA   LK
Sbjct: 319 FEPPVARLLSETGRLSRTPVFVVGVYSGNDKLGEGQGATLEQARLKAAMHALK 371



 Score = 38.1 bits (88), Expect = 0.98,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 3/73 (4%)

Query: 1   MSALRYSTLEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58
           + + + S L  R+  +     L  L + L  +S   +   +   L FLG  I+    S  
Sbjct: 89  LESAKLSALHARLSLSPK-IPLQTLARTLVDASADPNPLFNNSSLAFLGATIINYHASEW 147

Query: 59  LFNHFDSAKEGEL 71
              H+       L
Sbjct: 148 FMVHYPRLPMDVL 160


>gi|149019784|gb|EDL77932.1| DiGeorge syndrome critical region gene 8 (predicted), isoform CRA_b
           [Rattus norvegicus]
          Length = 620

 Score = 55.1 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+E   L E+      V P Y       P  +P F   V I G+    G   SK+ A+
Sbjct: 508 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVTIDGVTYGSGTASSKKLAK 565

Query: 213 QVAAAEVLK 221
             AA   L+
Sbjct: 566 NKAARATLE 574


>gi|148665097|gb|EDK97513.1| DiGeorge syndrome critical region gene 8, isoform CRA_b [Mus
           musculus]
          Length = 611

 Score = 55.1 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+E   L E+      V P Y       P  +P F   V I G+    G   SK+ A+
Sbjct: 508 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVTIDGVTYGSGTASSKKLAK 565

Query: 213 QVAAAEVLK 221
             AA   L+
Sbjct: 566 NKAARATLE 574


>gi|114685159|ref|XP_001167112.1| PREDICTED: DiGeorge syndrome critical region gene 8 isoform 1 [Pan
           troglodytes]
          Length = 700

 Score = 55.1 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+E   L E+      V P Y       P  +P F   V I G+    G   SK+ A+
Sbjct: 508 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVTIDGVTYGSGTASSKKLAK 565

Query: 213 QVAAAEVLK 221
             AA   L+
Sbjct: 566 NKAARATLE 574


>gi|159163522|pdb|1X47|A Chain A, Solution Structure Of Dsrm Domain In Dgcr8 Protein
          Length = 98

 Score = 55.1 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+E   L E+      V P Y       P  +P F   V I G+    G   SK+ A+
Sbjct: 14  NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVTIDGVTYGSGTASSKKLAK 71

Query: 213 QVAAAEVLK 221
             AA   L+
Sbjct: 72  NKAARATLE 80


>gi|73995913|ref|XP_543542.2| PREDICTED: similar to DiGeorge syndrome critical region gene 8
           [Canis familiaris]
          Length = 782

 Score = 55.1 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+E   L E+      V P Y       P  +P F   V I G+    G   SK+ A+
Sbjct: 489 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVTIDGVTYGSGTASSKKLAK 546

Query: 213 QVAAAEVLK 221
             AA   L+
Sbjct: 547 NKAARATLE 555


>gi|21226646|ref|NP_632568.1| exoribonuclease II [Methanosarcina mazei Go1]
 gi|20904927|gb|AAM30240.1| Exoribonuclease II [Methanosarcina mazei Go1]
          Length = 605

 Score = 55.1 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
              +D    LQE+  AK    P Y      G  + P FT      G + + G    K+ A
Sbjct: 532 NTSKDPIFALQEYCQAKKLPLPAYSFEME-GATNRPIFTCTCTF-GSSTSTGQAGKKQRA 589

Query: 212 EQVAAAEVL 220
           +++AA  ++
Sbjct: 590 KRLAARAMI 598


>gi|307169925|gb|EFN62434.1| tRNA-dihydrouridine synthase 2-like [Camponotus floridanus]
          Length = 467

 Score = 55.1 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 45/171 (26%), Gaps = 45/171 (26%)

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVC---------------------SFMTSIQ 115
             + ++T  Q+     L  + R  +   +D                       S    I 
Sbjct: 305 KFLDSQTLEQICEVWGLGDYCRSKNKEFRDKGLLGRFQVMPVMLDKDAKDNNVSHKRKIY 364

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
            +   SL+   +L                             KT L +W        P Y
Sbjct: 365 EENDVSLMRCAFLRNSYTTDSEL------------------PKTRLLKWTKENRKKMPIY 406

Query: 176 KVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVAAAEVLKREGI 225
                     D  F  VV + G        + +K+ AEQ AA   L   G+
Sbjct: 407 NTQQE-----DKLFCSVVTVDGRKYGSSFWEKNKKWAEQGAALVCLYFLGV 452


>gi|153792023|ref|NP_001093309.1| MLE protein [Bombyx mori]
 gi|147883246|gb|ABQ51917.1| MLE protein [Bombyx mori]
          Length = 1308

 Score = 55.1 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQ 213
            D K+ L  W  AK G+TP +     +GP H  RF   V + G +    G   +K+ A+ 
Sbjct: 1   MDIKSFLYTWC-AKKGLTPLFD-IRATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQM 58

Query: 214 VAAAE 218
            AA +
Sbjct: 59  NAAKD 63



 Score = 38.1 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 45/121 (37%), Gaps = 21/121 (17%)

Query: 122 LIAALYLDGGIEVAGTF--VDKYWKQRALKSGKFR------------RDAKTELQEWAHA 167
           +I   Y   G E    F  +D+  +Q+ ++  +               +AK++L ++   
Sbjct: 117 VIGPAYQAYGGENDKKFSYIDRMQQQKNVEEAEDLDINSSLHGNWTMENAKSKLHQFLQ- 175

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEI-----SGLAPAQGMDCSKRAAEQVAAAEVLKR 222
              +  +Y V    GPDH   F   + I           +    +K+ A +  A  ++++
Sbjct: 176 MNKINADY-VYKAVGPDHTRSFACELTIYVSQLGRNVTGRETASNKQTASKSCALSIVRQ 234

Query: 223 E 223
            
Sbjct: 235 L 235


>gi|195343659|ref|XP_002038413.1| GM10632 [Drosophila sechellia]
 gi|194133434|gb|EDW54950.1| GM10632 [Drosophila sechellia]
          Length = 321

 Score = 55.1 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 76/235 (32%), Gaps = 35/235 (14%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQ---------------ESYERLEFLGDRILGLLI 55
           KR+G +F   S L++A T  S +   +                    L   G  I    +
Sbjct: 72  KRLGESFE-LSELQRAFTEKSFAEREENRRRQLGIEESDLQMPHNSDLVEKGQHIARAYV 130

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI- 114
              L +         L    + L+S ET + V+  L     I            +  S  
Sbjct: 131 EAFLQHQLPKVPNEGLQAIASFLLSTETLAHVSSHLGTKDLI--------QSTEYPPSAE 182

Query: 115 -QADVVESLIAALYLDGGIEVAGTFVDKYW----KQRALKSGKFRRDAKTELQEWAHAKF 169
             A  + ++I AL    GIE A  FV  +      Q+ L      +     L++    + 
Sbjct: 183 SLAKSLHAVIGALASSSGIERAFIFVRDFICTQLNQKDLLDVWTPQKPIQLLEKICQERK 242

Query: 170 GVTPEYKVTFRSGPDHDPR---FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
               E ++    G   +     + V +  +     +G     + A + AA + L+
Sbjct: 243 LGEAEPRLLGDCGK--NTVLAAYQVGIYANRQLLGKGFGEDVKTATETAALDALQ 295


>gi|157786750|ref|NP_001099335.1| microprocessor complex subunit DGCR8 [Rattus norvegicus]
 gi|149019782|gb|EDL77930.1| DiGeorge syndrome critical region gene 8 (predicted), isoform CRA_a
           [Rattus norvegicus]
 gi|149019783|gb|EDL77931.1| DiGeorge syndrome critical region gene 8 (predicted), isoform CRA_a
           [Rattus norvegicus]
          Length = 773

 Score = 55.1 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+E   L E+      V P Y       P  +P F   V I G+    G   SK+ A+
Sbjct: 508 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVTIDGVTYGSGTASSKKLAK 565

Query: 213 QVAAAEVLK 221
             AA   L+
Sbjct: 566 NKAARATLE 574


>gi|147898439|ref|NP_001085043.1| hypothetical protein LOC432110 [Xenopus laevis]
 gi|47506884|gb|AAH70985.1| MGC78846 protein [Xenopus laevis]
          Length = 772

 Score = 55.1 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+E   L E+      V P Y       P  +P F   V I+G+    G   SK+ A+
Sbjct: 507 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVIINGVTYGTGTASSKKLAK 564

Query: 213 QVAAAEVLK 221
             AA   L+
Sbjct: 565 NKAARATLE 573


>gi|213512963|ref|NP_001133959.1| Spermatid perinuclear RNA-binding protein [Salmo salar]
 gi|209155962|gb|ACI34213.1| Spermatid perinuclear RNA-binding protein [Salmo salar]
          Length = 718

 Score = 54.7 bits (131), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 7/93 (7%)

Query: 132 IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
           I+     + K    +A+ + +        L      +     +YK+  +SGP H P FT+
Sbjct: 411 IKKMKRNLRKVLDSKAIDTNQ----PMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTM 464

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
            V++      +    SK+ A+   A +VL+  G
Sbjct: 465 SVDVDSTVH-EASGSSKKTAKLHVAVKVLQAMG 496



 Score = 43.5 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y++   SG  HD RF + VE+ G    +G   +
Sbjct: 551 KNPVMELNEKRRGL--KYELISESGGSHDKRFAMEVEVDGQK-FRGAGPN 597


>gi|190345739|gb|EDK37673.2| hypothetical protein PGUG_01771 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 617

 Score = 54.7 bits (131), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 78/215 (36%), Gaps = 19/215 (8%)

Query: 19  NRSLLEKALTHSSISH------------SYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           N +L ++  TH S                 Q   E+L   G  +L + +  LL   F  A
Sbjct: 152 NTNLRKRVFTHKSYRQISDFLEADSAEEFAQAHNEKLVLHGRSLLNVALLHLLDKKFPKA 211

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +  ++      L S+   +++A   +L+  ++ +             + + V  + + AL
Sbjct: 212 QAEDIESMKVRLSSSVVLTKMAMGYNLSQHLKHNISKELSN-EGKVLVLSTVFLAYLGAL 270

Query: 127 YLDG-GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           + +G  ++    +++K +     +       +   L  ++  KF + P  K   +SG  H
Sbjct: 271 FSEGYSMDEICLWIEKLYDPIVAEFDSEHMHSARPL-AYSELKFLLDPHLKF-KQSG--H 326

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           DP FT            G    K  A  V +   L
Sbjct: 327 DP-FTFKAYYRDTVIGIGSHSDKMMARIVTSENAL 360


>gi|149431138|ref|XP_001511149.1| PREDICTED: hypothetical protein, partial [Ornithorhynchus anatinus]
          Length = 197

 Score = 54.7 bits (131), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 4/72 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVA 215
            K  L EW H +    P Y+   R     +  F  VV ++         D SK+ AEQ A
Sbjct: 98  PKMCLLEWCHKEKLPQPVYETVQR---PSNGLFCSVVTVAEQKYKSSMWDKSKKLAEQAA 154

Query: 216 AAEVLKREGIWT 227
           A   LK  G+ T
Sbjct: 155 AIVCLKALGLPT 166


>gi|124487075|ref|NP_001074679.1| 39S ribosomal protein L44, mitochondrial precursor [Mus musculus]
 gi|74142583|dbj|BAE33863.1| unnamed protein product [Mus musculus]
 gi|148684323|gb|EDL16270.1| mCG21676 [Mus musculus]
          Length = 333

 Score = 54.7 bits (131), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 76/234 (32%), Gaps = 29/234 (12%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQ-----------------ESYERLEFLGDRILGLL 54
           R+   F+   LL+ A  +S    S +                 +  + L   G       
Sbjct: 78  RLQETFS-LDLLKTAFINSCYIKSEEAKRQSLGIEKEAALLNLKDNQELFEQGLSFSHRC 136

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
           ++  L + F            + L        VAR L +   + +S++    +      +
Sbjct: 137 LTQFLEDEFPDLPAEGTESLVSFLTGEAVVCHVARNLAVEQ-LTLSAEFPVPLP-----V 190

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR----DAKTELQEWAHAKFG 170
                 ++I AL    G E A  F+  +   +      F      +    L E    +  
Sbjct: 191 LRQTFFAVIGALLQSSGPERAALFIRDFLITQMTGKELFEMWTVVNPMGLLVEELKKRNI 250

Query: 171 VTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             PE ++T +SG     P + V +       A+G   +   AE+ AA   L++ 
Sbjct: 251 SAPESRLTRQSGSTTALPLYFVGLYCDRKLIAEGPGETVLVAEEEAARVALRKL 304


>gi|20178435|ref|NP_619856.1| CPXV069 protein [Cowpox virus]
 gi|20153053|gb|AAM13514.1|AF482758_65 CPXV069 protein [Cowpox virus]
 gi|14488159|emb|CAC42100.1| dsRNA binding protein [Cowpox virus]
          Length = 190

 Score = 54.7 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 9/105 (8%)

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK-----TELQEWAHAKFGVTPE 174
           +++  ++  D   E +     K +    +   K   D K     T + E+          
Sbjct: 78  DAMADSIIDDASREKSMREDHKSFDD--VIPAKKIIDWKDANPVTIINEYCQITKRDW-S 134

Query: 175 YKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           +++    GP + P F   V+I G    +    SKR A+  AA   
Sbjct: 135 FRIESV-GPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNAAKLA 178


>gi|114685157|ref|XP_001167234.1| PREDICTED: DiGeorge syndrome critical region gene 8 isoform 2 [Pan
           troglodytes]
          Length = 783

 Score = 54.7 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+E   L E+      V P Y       P  +P F   V I G+    G   SK+ A+
Sbjct: 508 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVTIDGVTYGSGTASSKKLAK 565

Query: 213 QVAAAEVLK 221
             AA   L+
Sbjct: 566 NKAARATLE 574


>gi|116787066|gb|ABK24361.1| unknown [Picea sitchensis]
          Length = 346

 Score = 54.7 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)

Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           ++     +  K  L++ A  K    P YK +   G  H P FT +VEI+G   A     S
Sbjct: 76  IEEVILPKKPKNVLEDIALKKNMPPPSYKFSKE-GEAHCPTFTAIVEINGAFYAGDPANS 134

Query: 208 KRAAEQVAAAEVLK 221
           K+ A   AA + ++
Sbjct: 135 KKDATNKAACKAIR 148



 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 19/54 (35%), Gaps = 1/54 (1%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
            K  LQE+        P Y      G DH PRF   V ++G         + + 
Sbjct: 2   FKGRLQEYTQKNSFPLPVYDTVNE-GQDHIPRFKCTVTVNGARYDSPPGFNHKK 54


>gi|119479385|ref|XP_001259721.1| RNase III domain protein [Neosartorya fischeri NRRL 181]
 gi|119407875|gb|EAW17824.1| RNase III domain protein [Neosartorya fischeri NRRL 181]
          Length = 259

 Score = 54.7 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 53/145 (36%), Gaps = 22/145 (15%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSV----------- 73
            A+TH S     +   +RL FLG RI+ L  S  L  +  +A                  
Sbjct: 109 LAVTHKSFDQGRRGFNDRLAFLGKRIVQLQASLALVQNPGNASSSSTPDSFGREPFAHPA 168

Query: 74  ----------RFNSLVSAETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQADVVESL 122
                       + L S    +++A++ +L   +R S     +   S M  + A  + ++
Sbjct: 169 LDGLKNLSPSTKSFLTSKPKLAELAQKYELQKVLRWSPRKPNNLASSGMELVLAHTMYAI 228

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA 147
           I A+ L+ G  VA     +   +  
Sbjct: 229 IGAIALEKGGHVANKVARERVLEPL 253


>gi|170172601|ref|NP_001116221.1| microprocessor complex subunit DGCR8 [Danio rerio]
 gi|122890881|emb|CAM13120.1| novel protein [Danio rerio]
          Length = 782

 Score = 54.7 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+E   L E+      V P Y       P  +P F   V I G+    G   SK+ A+
Sbjct: 517 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVIIDGVTYGTGTASSKKLAK 574

Query: 213 QVAAAEVLK 221
             AA   L+
Sbjct: 575 NKAARATLE 583


>gi|298256121|gb|ADI71339.1| RNase III-like protein [Pike-perch iridovirus]
          Length = 225

 Score = 54.7 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 62/192 (32%), Gaps = 25/192 (13%)

Query: 50  ILGLLISTLLFNHFDSAKEG----ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK 105
           +      +     F           ++       S ++ S +A  L    FIR  S    
Sbjct: 2   VASYFFPSYFLKRFPQLNSPKGVKTVARLKIYYGSKKSFSSIADSLGFWKFIR--SGPVP 59

Query: 106 DVCSFMTSIQADVVESLIAA--------LYLDG-GIEVAGTFVDKYWKQRALKSG-KFRR 155
              S   S+  D  E+ + A          +DG G  VA   +   +    +        
Sbjct: 60  VNPSTRESLLEDTFEAFLGAVCMAVDDEYSIDGLGAVVAYKIMADIFDDMDISLEYTALF 119

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA-AEQV 214
           D  T L+E    K  V     V    G       T V+ + G    +     KR  A++ 
Sbjct: 120 DTVTRLKELMDVKKDVLGGDAVYDHRGD------TTVITLKGRVIGKATGAIKRDRAKEA 173

Query: 215 A--AAEVLKREG 224
           A  A ++L+REG
Sbjct: 174 AGQALDLLRREG 185


>gi|298256115|gb|ADI71336.1| RNase III-like protein [European catfish virus]
 gi|298256117|gb|ADI71337.1| RNase III-like protein [Epizootic haematopoietic necrosis virus]
 gi|298256119|gb|ADI71338.1| RNase III-like protein [European sheatfish virus]
          Length = 225

 Score = 54.7 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 62/192 (32%), Gaps = 25/192 (13%)

Query: 50  ILGLLISTLLFNHFDSAKEG----ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK 105
           +      +     F           ++       S ++ S +A  L    FIR  S    
Sbjct: 2   VASYFFPSYFLKRFPQLNSPKGVKTVARLKIYYGSKKSFSSIADSLGFWKFIR--SGPVP 59

Query: 106 DVCSFMTSIQADVVESLIAA--------LYLDG-GIEVAGTFVDKYWKQRALKSG-KFRR 155
              S   S+  D  E+ + A          +DG G  VA   +   +    +        
Sbjct: 60  VNPSTRESLLEDTFEAFLGAVCTAVDDEYSIDGLGAVVAYKIMADIFDDMDISLEYTALF 119

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA-AEQV 214
           D  T L+E    K  V     V    G       T V+ + G    +     KR  A++ 
Sbjct: 120 DTVTRLKELMDVKKDVLGGDAVYDHRGD------TTVITLKGRVIGKATGAIKRDRAKEA 173

Query: 215 A--AAEVLKREG 224
           A  A ++L+REG
Sbjct: 174 AGQALDLLRREG 185


>gi|41152099|ref|NP_201581.2| microprocessor complex subunit DGCR8 [Mus musculus]
 gi|50403798|sp|Q9EQM6|DGCR8_MOUSE RecName: Full=Microprocessor complex subunit DGCR8; AltName:
           Full=DiGeorge syndrome critical region 8 homolog;
           AltName: Full=Gy1
 gi|38566065|gb|AAH62919.1| DiGeorge syndrome critical region gene 8 [Mus musculus]
 gi|40645099|dbj|BAD06468.1| Dgcr8 protein [Mus musculus]
 gi|42490933|gb|AAH66118.1| DiGeorge syndrome critical region gene 8 [Mus musculus]
 gi|117646832|emb|CAL37531.1| hypothetical protein [synthetic construct]
 gi|148665096|gb|EDK97512.1| DiGeorge syndrome critical region gene 8, isoform CRA_a [Mus
           musculus]
 gi|148665099|gb|EDK97515.1| DiGeorge syndrome critical region gene 8, isoform CRA_a [Mus
           musculus]
          Length = 773

 Score = 54.7 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+E   L E+      V P Y       P  +P F   V I G+    G   SK+ A+
Sbjct: 508 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVTIDGVTYGSGTASSKKLAK 565

Query: 213 QVAAAEVLK 221
             AA   L+
Sbjct: 566 NKAARATLE 574


>gi|38488720|ref|NP_073557.3| microprocessor complex subunit DGCR8 isoform 1 [Homo sapiens]
 gi|114685149|ref|XP_001167363.1| PREDICTED: DiGeorge syndrome critical region gene 8 isoform 5 [Pan
           troglodytes]
 gi|114685151|ref|XP_001167389.1| PREDICTED: DiGeorge syndrome critical region gene 8 isoform 6 [Pan
           troglodytes]
 gi|114685153|ref|XP_001167420.1| PREDICTED: DiGeorge syndrome critical region gene 8 isoform 7 [Pan
           troglodytes]
 gi|23813990|sp|Q8WYQ5|DGCR8_HUMAN RecName: Full=Microprocessor complex subunit DGCR8; AltName:
           Full=DiGeorge syndrome critical region 8
 gi|18147097|dbj|BAB83032.1| DGCR8 protein [Homo sapiens]
 gi|47678243|emb|CAG30242.1| Em:AC006547.4 [Homo sapiens]
 gi|109451272|emb|CAK54497.1| DGCR8 [synthetic construct]
 gi|109451850|emb|CAK54796.1| DGCR8 [synthetic construct]
 gi|119623403|gb|EAX02998.1| DiGeorge syndrome critical region gene 8, isoform CRA_a [Homo
           sapiens]
 gi|168279077|dbj|BAG11418.1| DiGeorge syndrome critical region gene 8 [synthetic construct]
          Length = 773

 Score = 54.7 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+E   L E+      V P Y       P  +P F   V I G+    G   SK+ A+
Sbjct: 508 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVTIDGVTYGSGTASSKKLAK 565

Query: 213 QVAAAEVLK 221
             AA   L+
Sbjct: 566 NKAARATLE 574


>gi|297708300|ref|XP_002830907.1| PREDICTED: microprocessor complex subunit DGCR8-like isoform 1
           [Pongo abelii]
 gi|297708302|ref|XP_002830908.1| PREDICTED: microprocessor complex subunit DGCR8-like isoform 2
           [Pongo abelii]
          Length = 773

 Score = 54.7 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+E   L E+      V P Y       P  +P F   V I G+    G   SK+ A+
Sbjct: 508 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVTIDGVTYGSGTASSKKLAK 565

Query: 213 QVAAAEVLK 221
             AA   L+
Sbjct: 566 NKAARATLE 574


>gi|332634877|ref|NP_001193848.1| DiGeorge syndrome critical region gene 8 [Sus scrofa]
          Length = 773

 Score = 54.7 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+E   L E+      V P Y       P  +P F   V I G+    G   SK+ A+
Sbjct: 508 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVTIDGVTYGSGTASSKKLAK 565

Query: 213 QVAAAEVLK 221
             AA   L+
Sbjct: 566 NKAARATLE 574


>gi|302565592|ref|NP_001181679.1| microprocessor complex subunit DGCR8 [Macaca mulatta]
 gi|297260575|ref|XP_002798321.1| PREDICTED: microprocessor complex subunit DGCR8-like isoform 2
           [Macaca mulatta]
          Length = 773

 Score = 54.7 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+E   L E+      V P Y       P  +P F   V I G+    G   SK+ A+
Sbjct: 508 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVTIDGVTYGSGTASSKKLAK 565

Query: 213 QVAAAEVLK 221
             AA   L+
Sbjct: 566 NKAARATLE 574


>gi|332262731|ref|XP_003280412.1| PREDICTED: microprocessor complex subunit DGCR8-like isoform 1
           [Nomascus leucogenys]
          Length = 773

 Score = 54.7 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+E   L E+      V P Y       P  +P F   V I G+    G   SK+ A+
Sbjct: 508 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVTIDGVTYGSGTASSKKLAK 565

Query: 213 QVAAAEVLK 221
             AA   L+
Sbjct: 566 NKAARATLE 574


>gi|298256125|gb|ADI71341.1| RNase III-like protein [Rana esculenta virus]
          Length = 225

 Score = 54.7 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 63/192 (32%), Gaps = 25/192 (13%)

Query: 50  ILGLLISTLLFNHFDSAKEG----ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK 105
           +      +     F           ++       S ++ S +A  L    FIR  S    
Sbjct: 2   VASYFFPSYFLKRFPQLNSPKGVKTVARLKIYYGSKKSFSSIADSLGFWKFIR--SGPVP 59

Query: 106 DVCSFMTSIQADVVESLIAA--------LYLDG-GIEVAGTFVDKYWKQRALKSG-KFRR 155
              S   S+  D  E+ + A          +DG G  VA   +   +    +        
Sbjct: 60  VNPSTRESLLEDTFEAFLGAVCMAVDDEYSIDGLGAVVAYKIMADIFDDMDISLEYTALF 119

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA-AEQV 214
           D  T L+E    K  V     V   SG       T ++ + G    +     KR  A++ 
Sbjct: 120 DTVTRLKELMDVKKDVLGGDAVYNHSGD------TTIITLKGRVIGKATGAIKRDRAKEA 173

Query: 215 A--AAEVLKREG 224
           A  A ++L+REG
Sbjct: 174 AGQALDLLRREG 185


>gi|226958738|ref|NP_001153011.1| DiGeorge syndrome critical region gene 8 [Xenopus (Silurana)
           tropicalis]
 gi|169261414|gb|ACA52287.1| DiGeorge syndrome critical region 8 [Xenopus tropicalis]
          Length = 772

 Score = 54.7 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+E   L E+      V P Y       P  +P F   V I G+    G   SK+ A+
Sbjct: 507 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVIIDGVTYGTGTASSKKLAK 564

Query: 213 QVAAAEVLK 221
             AA   L+
Sbjct: 565 NKAARATLE 573


>gi|126304888|ref|XP_001373897.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 495

 Score = 54.7 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVA 215
            K  L EW   +    P Y+   R     D  F  VV +S         D SK+ AEQ A
Sbjct: 368 PKMCLLEWCRKEKLAQPVYETIQR---PVDRLFCSVVTVSERKYRSALWDKSKKLAEQAA 424

Query: 216 AAEVLKREGI 225
           A   L+  G+
Sbjct: 425 AIVCLRSLGL 434


>gi|74222039|dbj|BAE26840.1| unnamed protein product [Mus musculus]
          Length = 308

 Score = 54.7 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 76/234 (32%), Gaps = 29/234 (12%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQ-----------------ESYERLEFLGDRILGLL 54
           R+   F+   LL+ A  +S    S +                 +  + L   G       
Sbjct: 53  RLQETFS-LDLLKTAFINSCYIKSEEAKRQSLGIEKEAALLNLKDNQELFEQGLSFSHRC 111

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
           ++  L + F            + L        VAR L +   + +S++    +      +
Sbjct: 112 LTQFLEDEFPDLPAEGTESLVSFLTGEAVVCHVARNLAVEQ-LTLSAEFPVPLP-----V 165

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR----DAKTELQEWAHAKFG 170
                 ++I AL    G E A  F+  +   +      F      +    L E    +  
Sbjct: 166 LRQTFFAVIGALLQSSGPERAALFIRDFLITQMTGKELFEMWTVVNPMGLLVEELKKRNI 225

Query: 171 VTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             PE ++T +SG     P + V +       A+G   +   AE+ AA   L++ 
Sbjct: 226 SAPESRLTRQSGSTTALPLYFVGLYCDRKLIAEGPGETVLVAEEEAARVALRKL 279


>gi|224146029|ref|XP_002325853.1| predicted protein [Populus trichocarpa]
 gi|222862728|gb|EEF00235.1| predicted protein [Populus trichocarpa]
          Length = 291

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            +    P Y  T +SG  H P F   VEI G++       +K+ AE  AA   
Sbjct: 234 REGCGFPTY-CTEKSGEAHAPTFISTVEIDGVSFTGKEARTKKQAEMSAAKIA 285



 Score = 48.9 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVA 215
            K+ LQ   H +    P Y+VT + G DH P F+  V ++     +     S + A+  A
Sbjct: 2   YKSNLQAVCHQRGWELPAYQVTKQ-GQDHSPLFSATVTVNATSFSSPSPSSSSKKAQSDA 60

Query: 216 AAEV 219
           A   
Sbjct: 61  AKLA 64


>gi|296191370|ref|XP_002806593.1| PREDICTED: LOW QUALITY PROTEIN: microprocessor complex subunit
           DGCR8-like [Callithrix jacchus]
          Length = 773

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+E   L E+      V P Y       P  +P F   V I G+    G   SK+ A+
Sbjct: 508 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVTIDGVTYGSGTASSKKLAK 565

Query: 213 QVAAAEVLK 221
             AA   L+
Sbjct: 566 NKAARATLE 574


>gi|291413067|ref|XP_002722795.1| PREDICTED: DiGeorge syndrome critical region gene 8 [Oryctolagus
           cuniculus]
          Length = 773

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+E   L E+      V P Y       P  +P F   V I G+    G   SK+ A+
Sbjct: 508 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVTIDGVTYGSGTASSKKLAK 565

Query: 213 QVAAAEVLK 221
             AA   L+
Sbjct: 566 NKAARATLE 574


>gi|307178016|gb|EFN66877.1| Protein DGCR8 [Camponotus floridanus]
          Length = 643

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 12/93 (12%)

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           D G   A  ++               +     L E+        P YK  F+   +    
Sbjct: 346 DNGQRPAKHWI----------MNPSGKSYVCILHEYVQHALKKQPTYK--FKELENAATP 393

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           ++ VV I+ +    G   SK+ A+  AA + L+
Sbjct: 394 YSAVVCINDMEYGSGFGSSKKQAKANAARKTLE 426


>gi|322787500|gb|EFZ13588.1| hypothetical protein SINV_13344 [Solenopsis invicta]
          Length = 1224

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 12/93 (12%)

Query: 129  DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
            D G   A  ++               +     L E+        P YK  F+   +    
Sbjct: 927  DNGQRPAKHWI----------MNPSGKSYVCILHEYVQHALKKQPTYK--FKELENAATP 974

Query: 189  FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            ++ VV I+ +    G   SK+ A+  AA + L+
Sbjct: 975  YSAVVCINDMEYGSGFGSSKKQAKANAARKTLE 1007


>gi|76156576|gb|AAX27760.2| SJCHGC04824 protein [Schistosoma japonicum]
          Length = 334

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 78/234 (33%), Gaps = 27/234 (11%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSIS-----------HSYQESYERLEFLGDRILGL 53
             +    RIG    ++ L+E  +T  S +           ++  ++   L   G  I   
Sbjct: 55  ELTAFLSRIGEKI-DKDLIEVIMTDQSYTSFWSVEKSKSINNIMQNNIELANFGFSITEN 113

Query: 54  LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF--- 110
            +S  L + +    E  ++     L S    + +A  L +   +  S  +          
Sbjct: 114 FLSAFLRSVYSHFPEEWITTIVQYLKSTSELAFIAGHLGIKDIVLYSDQVDYSSTKIISA 173

Query: 111 --MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR----DAKTELQEW 164
                I A+V+ +L+ AL  D  +E A  F+  +   R             +    LQ  
Sbjct: 174 PPNPDILANVLMALVGALAKDK-VERAHLFIRDFILARLTDLDLTELISIPEPLPLLQGI 232

Query: 165 AHAKFGVTPEYKVTFRSGPDHDPR---FTVVVEISGLAPAQGMDCSKRAAEQVA 215
             ++    PE ++ ++S    +     F V +        +    +   AEQ A
Sbjct: 233 LKSEGRGPPETRLLYQS--SMNTVLACFQVGIYSDRQLIGEAPGETLLIAEQEA 284


>gi|209154768|gb|ACI33616.1| Interleukin enhancer-binding factor 3 homolog [Salmo salar]
          Length = 683

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SKR A+   A +VL+  G+ T
Sbjct: 412 QLKPGLQYKLLSQTGPVHVPVFTMAVEVDGKS-FEASGPSKRTAKLHVAVKVLQDMGLPT 470



 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VEI      QG   +
Sbjct: 527 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEIDEQK-FQGTGSN 578


>gi|213511536|ref|NP_001135193.1| interleukin enhancer-binding factor 3 homolog [Salmo salar]
 gi|209152728|gb|ACI33127.1| Interleukin enhancer-binding factor 3 homolog [Salmo salar]
          Length = 843

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           +     +YK+  ++GP H P FT+ VE+ G +  +    SKR A+   A +VL+  G+ T
Sbjct: 412 QLKPGLQYKLLSQTGPVHVPVFTMAVEVDGKS-FEASGPSKRTAKLHVAVKVLQDMGLPT 470



 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VEI      QG   +
Sbjct: 527 LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEIDEQK-FQGTGSN 578


>gi|195430156|ref|XP_002063122.1| GK21754 [Drosophila willistoni]
 gi|194159207|gb|EDW74108.1| GK21754 [Drosophila willistoni]
          Length = 1401

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 6/74 (8%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQ 213
            D K+ L E+  +K    P+++V   +GP H  RF   V +   +  A G   +K+ AE+
Sbjct: 1   MDIKSFLFEYC-SKNHTEPKFEV-RPTGPKHRQRFLCEVRVEKCSYVAVGNSTNKKDAEK 58

Query: 214 VAAAEV---LKREG 224
            A+ +    L R G
Sbjct: 59  NASRDFVNYLVRMG 72



 Score = 38.1 bits (88), Expect = 0.89,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI-----SGLAPAQGMDCSKRA 210
           +AK  L  +  A      +YK T   GPDH   F   + I          A+    +K++
Sbjct: 183 NAKDRLNIYKQANNIRD-DYKYTPV-GPDHARSFMAELSIFVPALKRKVTARNTGSNKKS 240

Query: 211 AEQVAAAEVLKRE 223
           A +  A  ++++ 
Sbjct: 241 ASKSCALSLVRQL 253


>gi|240848923|ref|NP_001155644.1| protein kinase, interferon inducible double stranded RNA dependent
           activator-like [Acyrthosiphon pisum]
 gi|239790447|dbj|BAH71784.1| ACYPI005748 [Acyrthosiphon pisum]
          Length = 339

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           +L +         PE+ +    G  H   FT+   ++          +K+ A+ +AA ++
Sbjct: 123 QLNDICTNNKLGLPEFNLVREEGQAHAKLFTISCHVA-KMIETATHKTKKQAKHLAAVQM 181

Query: 220 LKRE 223
           + + 
Sbjct: 182 VNKL 185



 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPR-FTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           + +QE+A AK  + P+Y +   +G  H    F   + +     A G   SK+ A+ VAA 
Sbjct: 25  SIVQEYA-AKNRLVPQYDLIH-NGVSHSKVSFKYSLTLDDYV-AVGDGSSKKEAKHVAAL 81

Query: 218 EVLK 221
            +LK
Sbjct: 82  NLLK 85


>gi|149758673|ref|XP_001488087.1| PREDICTED: similar to DiGeorge syndrome critical region gene 8
           [Equus caballus]
          Length = 773

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+E   L E+      V P Y       P  +P F   V I G+    G   SK+ A+
Sbjct: 508 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVTIDGVTYGSGTASSKKLAK 565

Query: 213 QVAAAEVLK 221
             AA   L+
Sbjct: 566 NKAARATLE 574


>gi|149412383|ref|XP_001508965.1| PREDICTED: similar to 65 kD protein kinase [Ornithorhynchus
           anatinus]
          Length = 546

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           L E+   +      Y+   ++GPDH+ +FT+ V I G    +    S
Sbjct: 14  LHEYCQKRGLKL-VYRDVSKTGPDHNLQFTIQVIIEGREFPEASGSS 59


>gi|158341217|ref|YP_001522419.1| hypothetical protein AM1_F0115 [Acaryochloris marina MBIC11017]
 gi|158311458|gb|ABW33069.1| hypothetical protein AM1_F0115 [Acaryochloris marina MBIC11017]
          Length = 157

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 8/80 (10%)

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS-GPDHDPRFTVVVEISGLAPAQ 202
            Q   +  +  ++   +LQE    +    P Y+ +  S G      F  +V+  GL    
Sbjct: 72  DQPISQVDEQVKNPIGQLQELCQKQQISLPRYEFSEISEG------FRCLVQSMGLQ-GV 124

Query: 203 GMDCSKRAAEQVAAAEVLKR 222
           G   SK+ A+  AA  +LKR
Sbjct: 125 GEGASKKKAKMGAAEMLLKR 144


>gi|300863100|ref|NP_001025431.2| 39S ribosomal protein L44, mitochondrial [Danio rerio]
          Length = 332

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 61/173 (35%), Gaps = 11/173 (6%)

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S    N F +  +  ++     L  +E    VAR L +   + +S++           I 
Sbjct: 136 SDWCKNSFPNLPDEGVAAIAGHLTGSEVICHVARNLAVEE-LTMSAEFPVP-----DHIL 189

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR----DAKTELQEWAHAKFGV 171
                ++I AL    G   AG F+  +   + +    F      D    L E    K   
Sbjct: 190 QGTFFAVIGALEQSSGPVRAGLFIRDFLVTQLIGKDLFDMWKVVDPMGLLVEELTRKGVA 249

Query: 172 TPEYKVTFRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            PE ++   +G     P + V +       AQG   +   AE+ AA   L++ 
Sbjct: 250 LPEPRLIRSAGASTVLPLYFVGLYSDRKLLAQGPGETVLIAEEEAARVALRKL 302


>gi|148665098|gb|EDK97514.1| DiGeorge syndrome critical region gene 8, isoform CRA_c [Mus
           musculus]
          Length = 588

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+E   L E+      V P Y       P  +P F   V I G+    G   SK+ A+
Sbjct: 323 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVTIDGVTYGSGTASSKKLAK 380

Query: 213 QVAAAEVLK 221
             AA   L+
Sbjct: 381 NKAARATLE 389


>gi|126631560|gb|AAI33991.1| Zgc:114114 protein [Danio rerio]
          Length = 332

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 61/173 (35%), Gaps = 11/173 (6%)

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
           S    N F +  +  ++     L  +E    VAR L +   + +S++           I 
Sbjct: 136 SDWCKNSFPNLPDEGVAAIAGHLTGSEVICHVARNLAVEE-LTMSAEFPVP-----DHIL 189

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR----DAKTELQEWAHAKFGV 171
                ++I AL    G   AG F+  +   + +    F      D    L E    K   
Sbjct: 190 QGTFFAVIGALEQSSGPVRAGLFIRDFLVTQLIGKDLFDMWKVVDPMGLLVEELTRKGVA 249

Query: 172 TPEYKVTFRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            PE ++   +G     P + V +       AQG   +   AE+ AA   L++ 
Sbjct: 250 LPEPRLIRSAGASTVLPLYFVGLYSDRKLLAQGPGETVLIAEEEAARVALRKL 302


>gi|312377844|gb|EFR24577.1| hypothetical protein AND_10726 [Anopheles darlingi]
          Length = 199

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213
           D K+    W      V P ++V   +GP H  RF   V + G     G+  S  K+ +E+
Sbjct: 3   DMKSFFMIWCQKNV-VEPSFEV-RPTGPKHRQRFLCEVRLPGYNY-TGVGNSTNKKDSEK 59

Query: 214 VAAAE 218
            AA +
Sbjct: 60  NAARD 64


>gi|242023479|ref|XP_002432161.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212517543|gb|EEB19423.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 652

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 156 DAKT---ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+    L E+        P Y  TF+   +    +  VV I  +    G+  SK+ A+
Sbjct: 375 NGKSYVCILHEYVQRALKDQPVY--TFKELENTATPYLAVVSIGNIQYGTGVGSSKKQAK 432

Query: 213 QVAAAEVLK 221
             AA   L+
Sbjct: 433 HDAAKATLE 441


>gi|115680274|ref|XP_001190439.1| PREDICTED: similar to tRNA-dihydrouridine synthase
           [Strongylocentrotus purpuratus]
 gi|115717831|ref|XP_001201154.1| PREDICTED: similar to tRNA-dihydrouridine synthase
           [Strongylocentrotus purpuratus]
          Length = 499

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVA 215
            K  L E+ HAK    P Y +        +  F   V +     A      SK+ +EQ A
Sbjct: 327 FKGVLIEYCHAKKLHPPHYTLEEDI---ENRVFRSSVIVDDQEYATTLWCTSKKYSEQGA 383

Query: 216 AAEVLKREGI 225
           AA   ++ G+
Sbjct: 384 AAVCCQQLGL 393


>gi|51342212|gb|AAU01256.1| MPXV-WRAIR046 [Monkeypox virus]
 gi|58220516|gb|AAW67804.1| MPXV-SL-046 [Monkeypox virus]
 gi|59858852|gb|AAX09147.1| MPXV-COP-046 [Monkeypox virus]
 gi|68448726|gb|AAY96849.1| double-stranded RNA binding protein [Monkeypox virus]
 gi|68449329|gb|AAY97449.1| double-stranded RNA binding protein [Monkeypox virus]
 gi|68449528|gb|AAY97647.1| double-stranded RNA binding protein [Monkeypox virus]
          Length = 153

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  T + E+          +++    GP + P F   V+I G    +    SKR A+  A
Sbjct: 80  NPVTVINEYCQITRRDW-SFRIESV-GPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNA 137

Query: 216 AAEVLKRE 223
           A   + + 
Sbjct: 138 AKLAVDKL 145


>gi|17974965|ref|NP_536479.1| F3L [Monkeypox virus Zaire-96-I-16]
 gi|17529832|gb|AAL40510.1|AF380138_52 F3L [Monkeypox virus Zaire-96-I-16]
 gi|68448928|gb|AAY97050.1| double-stranded RNA binding protein [Monkeypox virus]
 gi|68449129|gb|AAY97250.1| double-stranded RNA binding protein [Monkeypox virus]
 gi|300872673|gb|ADK39075.1| double-stranded RNA binding protein [Monkeypox virus]
 gi|323098461|gb|ADX22699.1| double-stranded RNA binding protein [Monkeypox virus]
 gi|323098658|gb|ADX22895.1| double-stranded RNA binding protein [Monkeypox virus]
          Length = 153

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  T + E+          +++    GP + P F   V+I G    +    SKR A+  A
Sbjct: 80  NPVTVINEYCQITRRDW-SFRIESV-GPSNSPTFYACVDIDGRVFDKADGKSKRDAKNNA 137

Query: 216 AAEVLKRE 223
           A   + + 
Sbjct: 138 AKLAVDKL 145


>gi|195505492|ref|XP_002099528.1| GE10954 [Drosophila yakuba]
 gi|194185629|gb|EDW99240.1| GE10954 [Drosophila yakuba]
          Length = 643

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 156 DAKT---ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+    L E+        P Y+  F+   +    ++  V ++ L    G   SK+ A+
Sbjct: 367 NGKSFVCILHEYVQHALKTQPTYE--FKELQNAATPYSATVSVNNLKYGTGYGTSKKQAK 424

Query: 213 QVAAAEVLK 221
             AA E L+
Sbjct: 425 SEAARETLE 433


>gi|195036498|ref|XP_001989707.1| GH18644 [Drosophila grimshawi]
 gi|193893903|gb|EDV92769.1| GH18644 [Drosophila grimshawi]
          Length = 654

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 156 DAKT---ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+    L E+        P Y+  F+   +    ++  V ++ L    G   SK+ A+
Sbjct: 378 NGKSFVCILHEYVQHALKTQPTYE--FKELQNAATPYSATVSVNNLKYGTGYGTSKKQAK 435

Query: 213 QVAAAEVLK 221
             AA E L+
Sbjct: 436 SEAARETLE 444


>gi|74151695|dbj|BAE29642.1| unnamed protein product [Mus musculus]
 gi|74199060|dbj|BAE30743.1| unnamed protein product [Mus musculus]
          Length = 292

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 76/234 (32%), Gaps = 29/234 (12%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQ-----------------ESYERLEFLGDRILGLL 54
           R+   F+   LL+ A  +S    S +                 +  + L   G       
Sbjct: 37  RLQETFS-LDLLKTAFINSCYIKSEEAKRQSLGIEKEAALLNLKDNQELFEQGLSFSHRC 95

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
           ++  L + F            + L        VAR L +   + +S++    +      +
Sbjct: 96  LTQFLEDEFPDLPAEGTESLVSFLTGEAVVCHVARNLAVEQ-LTLSAEFPVPLP-----V 149

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR----DAKTELQEWAHAKFG 170
                 ++I AL    G E A  F+  +   +      F      +    L E    +  
Sbjct: 150 LRQTFFAVIGALLQSSGPERAALFIRDFLITQMTGKELFEMWTVVNPMGLLVEELKKRNI 209

Query: 171 VTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             PE ++T +SG     P + V +       A+G   +   AE+ AA   L++ 
Sbjct: 210 SAPESRLTRQSGSTTALPLYFVGLYCDRKLIAEGPGETVLVAEEEAARVALRKL 263


>gi|320590885|gb|EFX03328.1| 60S ribosomal protein l3 [Grosmannia clavigera kw1407]
          Length = 471

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 44/138 (31%), Gaps = 10/138 (7%)

Query: 88  ARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRA 147
           A  LDL       S              A+ V ++  A+Y  GG E    FV  +   R 
Sbjct: 304 ASALDLG-----GSMDAGTKTRIADDAHANFVRAVAGAVYAHGGREPVRAFVRAHVLSRQ 358

Query: 148 LKSGKFRRDAK---TELQEWAHAKFGVTPEYKVTFRSG-PDHDPRFTVVVEISGLAPAQG 203
           L   +  R  K    EL      +    P  ++   +G     P F V +        +G
Sbjct: 359 LDLERLFR-FKLPTRELAYLCARENFEPPVARLEAETGRQSRTPVFVVGIYSGNDKLGEG 417

Query: 204 MDCSKRAAEQVAAAEVLK 221
              S   A   AA   LK
Sbjct: 418 AAASLDHARAKAAMNSLK 435



 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 3/92 (3%)

Query: 3   ALRYSTLEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           + + + L  R+G +     L  L +AL  +S   S + +   L +LG  ++   +S  L 
Sbjct: 127 SAKLAALHARLGLS-QRLPLETLARALVDTSADPSLRFNNASLAYLGATLIHYHVSEWLM 185

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELD 92
             +       L     +    +  + VA +  
Sbjct: 186 CRYPRLPMVILYAAMKAYAGPQALADVAHQWG 217


>gi|158339696|ref|YP_001520703.1| hypothetical protein AM1_A0044 [Acaryochloris marina MBIC11017]
 gi|158309937|gb|ABW31553.1| hypothetical protein AM1_A0044 [Acaryochloris marina MBIC11017]
          Length = 157

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 8/80 (10%)

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS-GPDHDPRFTVVVEISGLAPAQ 202
            Q   +  +  ++   +LQE    +    P Y+ +  S G      F  +V+  GL    
Sbjct: 72  DQPISQVDEQVKNPIGQLQELCQKQQISLPRYEFSEISEG------FRCLVQSMGLQ-GV 124

Query: 203 GMDCSKRAAEQVAAAEVLKR 222
           G   SK+ A+  AA  +LKR
Sbjct: 125 GEGASKKKAKMGAAEMLLKR 144


>gi|224159933|ref|XP_002338148.1| predicted protein [Populus trichocarpa]
 gi|222871054|gb|EEF08185.1| predicted protein [Populus trichocarpa]
          Length = 83

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQVA 215
            K++LQ+ +  +    P  +VT   G +H P F   V +     +  +   S + A+  A
Sbjct: 2   YKSKLQQLSQQRGWEIPTSEVTKE-GQEHSPLFYATVTVDATLFSTPLPSSSSKEAQNAA 60

Query: 216 AAEV 219
           A + 
Sbjct: 61  AKQA 64


>gi|39645186|gb|AAH09323.2| DGCR8 protein [Homo sapiens]
          Length = 517

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+E   L E+      V P Y       P  +P F   V I G+    G   SK+ A+
Sbjct: 252 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVTIDGVTYGSGTASSKKLAK 309

Query: 213 QVAAAEVLK 221
             AA   L+
Sbjct: 310 NKAARATLE 318


>gi|52546044|emb|CAE46205.2| hypothetical protein [Homo sapiens]
          Length = 492

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+E   L E+      V P Y       P  +P F   V I G+    G   SK+ A+
Sbjct: 227 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVTIDGVTYGSGTASSKKLAK 284

Query: 213 QVAAAEVLK 221
             AA   L+
Sbjct: 285 NKAARATLE 293


>gi|155372129|ref|NP_001094674.1| microprocessor complex subunit DGCR8 [Bos taurus]
 gi|259645217|sp|A6QR44|DGCR8_BOVIN RecName: Full=Microprocessor complex subunit DGCR8; AltName:
           Full=DiGeorge syndrome critical region 8 homolog
 gi|151554704|gb|AAI50110.1| DGCR8 protein [Bos taurus]
 gi|296478289|gb|DAA20404.1| DiGeorge syndrome critical region gene 8 [Bos taurus]
          Length = 760

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+E   L E+      V P Y       P  +P F   V I G+    G   SK+ A+
Sbjct: 495 NGKSEVCILHEYMQRVLKVRPVYSFFECENPS-EP-FGASVTIDGVTYGSGTASSKKLAK 552

Query: 213 QVAAAEVLK 221
             AA   L+
Sbjct: 553 NKAARATLE 561


>gi|321457593|gb|EFX68676.1| hypothetical protein DAPPUDRAFT_329837 [Daphnia pulex]
          Length = 120

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 5/69 (7%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLIS-TLLFNHFDSA 66
            E+ + Y F ++ +L +ALT     +S +  +Y+RLE +GD  L  L +           
Sbjct: 55  FEEVLSYTFNDKEVLLEALT---YGNSIRSLNYQRLEVIGDAALEFLAALQFFKQSSLYH 111

Query: 67  KEGELSVRF 75
             G++S   
Sbjct: 112 SAGDISQLR 120


>gi|119623404|gb|EAX02999.1| DiGeorge syndrome critical region gene 8, isoform CRA_b [Homo
           sapiens]
          Length = 490

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+E   L E+      V P Y       P  +P F   V I G+    G   SK+ A+
Sbjct: 225 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVTIDGVTYGSGTASSKKLAK 282

Query: 213 QVAAAEVLK 221
             AA   L+
Sbjct: 283 NKAARATLE 291


>gi|114685161|ref|XP_001167301.1| PREDICTED: DiGeorge syndrome critical region gene 8 isoform 3 [Pan
           troglodytes]
          Length = 489

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+E   L E+      V P Y       P  +P F   V I G+    G   SK+ A+
Sbjct: 224 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVTIDGVTYGSGTASSKKLAK 281

Query: 213 QVAAAEVLK 221
             AA   L+
Sbjct: 282 NKAARATLE 290


>gi|10438086|dbj|BAB15165.1| unnamed protein product [Homo sapiens]
          Length = 490

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+E   L E+      V P Y       P  +P F   V I G+    G   SK+ A+
Sbjct: 225 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVTIDGVTYGSGTASSKKLAK 282

Query: 213 QVAAAEVLK 221
             AA   L+
Sbjct: 283 NKAARATLE 291


>gi|301770469|ref|XP_002920627.1| PREDICTED: microprocessor complex subunit DGCR8-like [Ailuropoda
           melanoleuca]
          Length = 773

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+E   L E+      V P Y       P  +P F   V I G+    G   SK+ A+
Sbjct: 508 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVTIDGVTYGSGTASSKKLAK 565

Query: 213 QVAAAEVLK 221
             AA   L+
Sbjct: 566 NKAARATLE 574


>gi|158323833|gb|ABW34420.1| RNase3 class I protein [Sweet potato chlorotic stunt virus]
          Length = 228

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 59/153 (38%), Gaps = 15/153 (9%)

Query: 37  QESYERLEFLGDRILGLLISTLLFNHFD-SAKEGELSVRFNSLVSAETCSQVARELDLAS 95
            E  ++ E LGD  +   ++++L + F   A    LS+     +S    ++V  E     
Sbjct: 33  SEDRDKYEILGDWAITTYVTSMLTDLFKHDADAESLSLLRAHNISNFMFAKVMVESRFYE 92

Query: 96  ------------FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW 143
                         R++    K+V        A+  E ++  L ++   E    F+D + 
Sbjct: 93  DFSIWLTPDQLQLCRMTFGGGKNVYEVNVKFLANYFERVVGWLVINDSSESIKMFLDLFL 152

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK 176
           K   L S + ++ A++ LQEWA         Y 
Sbjct: 153 KP--LMSFRIKKPARSILQEWAVKNNKRLDIYT 183


>gi|21357163|ref|NP_651879.1| partner of drosha [Drosophila melanogaster]
 gi|7302074|gb|AAF57175.1| partner of drosha [Drosophila melanogaster]
 gi|16197965|gb|AAL13753.1| LD23072p [Drosophila melanogaster]
 gi|220945782|gb|ACL85434.1| pasha-PA [synthetic construct]
 gi|220955486|gb|ACL90286.1| pasha-PA [synthetic construct]
          Length = 642

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 156 DAKT---ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+    L E+        P Y+  F+   +    ++  V ++ L    G   SK+ A+
Sbjct: 366 NGKSFVCILHEYVQHALKTQPTYE--FKELQNAATPYSATVSVNNLKYGTGYGTSKKQAK 423

Query: 213 QVAAAEVLK 221
             AA E L+
Sbjct: 424 SEAARETLE 432


>gi|296087343|emb|CBI33717.3| unnamed protein product [Vitis vinifera]
          Length = 286

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 51/147 (34%), Gaps = 10/147 (6%)

Query: 18  ANRSL---LEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            N  L   L+    H S       +  YERLE++G +I  ++++  L      A    L 
Sbjct: 140 RNIELGLGLQLCFLHPSKHKFEHPRFCYERLEYVGQKIQDIVMAERLLMKHLDAPGKWLQ 199

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSS----DLRKDVCSFMTSIQADVVESLIAALYL 128
            +   L+  + C +  R+  L  FI  S         +      +    V +++    YL
Sbjct: 200 EKHRRLLMNKFCGRYLRDKYLHRFIIYSEQVQDSYEHNRRLRNPAT-TAVQQAIHGLSYL 258

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRR 155
             G       + + +    ++     R
Sbjct: 259 VYGKPDVRRLMFEVFDFEQIQPKPVLR 285


>gi|170574540|ref|XP_001892859.1| Double-stranded RNA binding motif family protein [Brugia malayi]
 gi|158601386|gb|EDP38310.1| Double-stranded RNA binding motif family protein [Brugia malayi]
          Length = 369

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 30/96 (31%), Gaps = 8/96 (8%)

Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKT---ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
            A   + K  ++ +          KT    L         +   Y+     GP +   F 
Sbjct: 93  AAKDMLKKMIEKESFSDFGLG---KTKEEALANLCQKLKLLNATYE-IDEEGPTNQRIFI 148

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIW 226
               + G         +K+ A+ +AA ++  +   W
Sbjct: 149 ATCTV-GKIHVVAHGKTKKIAKTLAAQKMCTQLENW 183



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F    E+ G+    G   +K+ A+Q+AA ++LK+ 
Sbjct: 68  FATRCELYGI-YTMGYGRTKKIAKQMAAKDMLKKM 101


>gi|332022933|gb|EGI63201.1| Microprocessor complex subunit DGCR8 [Acromyrmex echinatior]
          Length = 650

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 12/93 (12%)

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR 188
           D G   A  ++               +     L E+        P YK  F+   +    
Sbjct: 353 DNGQRPAKHWI----------MNPSGKSYVCILHEYVQHALKKQPTYK--FKELENAATP 400

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           ++ VV I+ +    G   SK+ A+  AA + L+
Sbjct: 401 YSAVVCINDMEYGSGFGSSKKQAKANAARKTLE 433


>gi|281353794|gb|EFB29378.1| hypothetical protein PANDA_009401 [Ailuropoda melanoleuca]
          Length = 753

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+E   L E+      V P Y       P  +P F   V I G+    G   SK+ A+
Sbjct: 508 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVTIDGVTYGSGTASSKKLAK 565

Query: 213 QVAAAEVLK 221
             AA   L+
Sbjct: 566 NKAARATLE 574


>gi|62897151|dbj|BAD96516.1| DiGeorge syndrome critical region gene 8 variant [Homo sapiens]
          Length = 570

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+E   L E+      V P Y       P  +P F   V I G+    G   SK+ A+
Sbjct: 305 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVTIDGVTYGSGTASSKKLAK 362

Query: 213 QVAAAEVLK 221
             AA   L+
Sbjct: 363 NKAARATLE 371


>gi|218194135|gb|EEC76562.1| hypothetical protein OsI_14382 [Oryza sativa Indica Group]
          Length = 176

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 54/146 (36%), Gaps = 9/146 (6%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            +TL+ +I Y F    LL +A+TH+S S     +   L  LG        +         
Sbjct: 34  LATLQNQIAYRFHAPDLLRRAMTHASYSRENGRA---LAVLGLAASQSAAALRALAADHD 90

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A    +S R         C   A  + + S +RV++  +         +    + +LI A
Sbjct: 91  ASASPVSRRARDASGEAACVAAAARVGIPSIVRVAAGTKPTA----PPVVCGALRALIGA 146

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG 151
           + +D     A   V  +WK   L + 
Sbjct: 147 VAVDANSTHAAEEV--FWKLHVLTAA 170


>gi|194904820|ref|XP_001981066.1| GG11821 [Drosophila erecta]
 gi|190655704|gb|EDV52936.1| GG11821 [Drosophila erecta]
          Length = 642

 Score = 54.3 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 156 DAKT---ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+    L E+        P Y+  F+   +    ++  V ++ L    G   SK+ A+
Sbjct: 366 NGKSFVCILHEYVQHALKTQPTYE--FKELQNAATPYSATVSVNNLKYGTGYGTSKKQAK 423

Query: 213 QVAAAEVLK 221
             AA E L+
Sbjct: 424 SEAARETLE 432


>gi|225679540|gb|EEH17824.1| 60S ribosomal protein L3 [Paracoccidioides brasiliensis Pb03]
          Length = 394

 Score = 53.9 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 83/266 (31%), Gaps = 60/266 (22%)

Query: 1   MSALRYSTLEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58
           +++ + + L  R+        L  L + L   S+  S Q + + L  LG  +L    S  
Sbjct: 80  LNSPKLAALHARLSL-PRRLPLQTLARTLVDESVDPSPQFNNKSLSILGGDLLTYYTSEH 138

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL------------------------- 93
           L + +       L     S + A+  + + RE  L                         
Sbjct: 139 LISTYPRLPIKVLWAAMYSYIGAKPLAAMTREWGLEFIADPGAEVDPGFLQFKRLPPDTE 198

Query: 94  ------ASFIRVSSDLRKD--------VCSFMTSIQ---------------ADVVESLIA 124
                  +F+R   +L K           +F  S                 A+ V +++ 
Sbjct: 199 VKTNANGTFLRPDGNLSKRSTSARIIYGDAFGESALPYPVQYEGVTPNRACANFVRAVMG 258

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YL  G   A  F  +++  R L        R    +L +    +    P  K+   +G
Sbjct: 259 AVYLHAGRPAAKLFFKEHFMSRYLNMASLFSFRQPTRDLSKLCRREGFEDPVAKILSETG 318

Query: 183 P-DHDPRFTVVVEISGLAPAQGMDCS 207
              + P F V +        +G   S
Sbjct: 319 RLSNRPVFNVGIFSGPDKLGEGAGGS 344


>gi|240278441|gb|EER41947.1| conserved hypothetical protein [Ajellomyces capsulatus H143]
          Length = 141

 Score = 53.9 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 51/131 (38%), Gaps = 11/131 (8%)

Query: 8   TLEKRIGYAFANRSLLEKAL-THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
            +EK  GY F N SL  KAL T    +   Q+S   L  +GD  L L + T+ +     A
Sbjct: 14  EIEKATGYTFTNPSLCLKALQTAGCAAAGGQKS---LAQVGDAALRLALVTIGYGK--GA 68

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
             G++     +  S    +    E      +      R         + A  V++++ A+
Sbjct: 69  SRGQIDSALRTKASNSHLADQGFERGFDGCVY-----RIGGVDVSMKMMATAVQAVLGAV 123

Query: 127 YLDGGIEVAGT 137
           +LD    +  +
Sbjct: 124 FLDCNKNIYRS 134


>gi|166796315|gb|AAI59182.1| dgcr8 protein [Xenopus (Silurana) tropicalis]
          Length = 550

 Score = 53.9 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+E   L E+      V P Y       P  +P F   V I G+    G   SK+ A+
Sbjct: 285 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVIIDGVTYGTGTASSKKLAK 342

Query: 213 QVAAAEVLK 221
             AA   L+
Sbjct: 343 NKAARATLE 351


>gi|158339712|ref|YP_001520718.1| hypothetical protein AM1_A0060 [Acaryochloris marina MBIC11017]
 gi|158309953|gb|ABW31569.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
          Length = 157

 Score = 53.9 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 6/71 (8%)

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           SG    +    LQE    +    P Y+  F + P+    F   V+  GL    G   SK+
Sbjct: 78  SGDVVENPIGTLQELCQRQQISMPSYE--FETIPEG---FRCSVQAMGLR-GVGEGVSKK 131

Query: 210 AAEQVAAAEVL 220
            A+  AA ++L
Sbjct: 132 KAKMGAARKLL 142


>gi|68053231|sp|Q9CY73|RM44_MOUSE RecName: Full=39S ribosomal protein L44, mitochondrial;
           Short=L44mt; Short=MRP-L44; Flags: Precursor
          Length = 333

 Score = 53.9 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 76/234 (32%), Gaps = 29/234 (12%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQ-----------------ESYERLEFLGDRILGLL 54
           R+   F+   LL+ A  +S    S +                 +  + L   G       
Sbjct: 78  RLQETFS-LDLLKTAFINSCYIKSEEAKRQSLGIEKEAALLNLKDNQELFEQGLSFSHRC 136

Query: 55  ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI 114
           ++  L + F            + L        VAR L +   + +S++    +      +
Sbjct: 137 LTQFLEDEFPDLPAEGTESLVSFLTGEAVVCHVARNLAVEQ-LTLSAEFPVPLP-----V 190

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR----DAKTELQEWAHAKFG 170
                 ++I AL    G E A  F+  +   +      F      +    L E    +  
Sbjct: 191 LRQTFFAVIGALLQSSGPERAALFIRDFLITQMTGKELFEMWPVVNPMGLLVEELKKRDI 250

Query: 171 VTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             PE ++T +SG     P + V +       A+G   +   AE+ AA   L++ 
Sbjct: 251 SAPESRLTRQSGSTTALPLYFVGLYCDRKLIAEGPGETVLVAEEEAARVALRKL 304


>gi|328722856|ref|XP_001948677.2| PREDICTED: microprocessor complex subunit DGCR8-like [Acyrthosiphon
           pisum]
          Length = 472

 Score = 53.9 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 8/70 (11%)

Query: 155 RDAKTELQEWAHAKFGVTPEYK---VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
           +   + L E+        P Y+   +     P     +   V + G+    G+  SK+ A
Sbjct: 229 KSYVSILHEYIQRVLKTQPSYEFKELENARYP-----YLATVILDGMQYGIGIGSSKKQA 283

Query: 212 EQVAAAEVLK 221
           +  AA   L+
Sbjct: 284 KLDAARATLE 293


>gi|298256123|gb|ADI71340.1| RNase III-like protein [Ranavirus maxima/9995205/DNK]
          Length = 225

 Score = 53.9 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 61/192 (31%), Gaps = 25/192 (13%)

Query: 50  ILGLLISTLLFNHFDSAKEG----ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK 105
           +      +     F           ++       S ++ S +A  L    FIR  S    
Sbjct: 2   VASYFFPSYFIKRFPQLNSPKGVKTVARLKIYYGSKKSFSSIADSLGFWKFIR--SGPVP 59

Query: 106 DVCSFMTSIQADVVESLIAA--------LYLDG-GIEVAGTFVDKYWKQRALKSG-KFRR 155
              S   S+  D  E+ + A          +DG G  V    +   +    +        
Sbjct: 60  VNPSTRESLLEDTFEAFLGAVCTAVDDEYSIDGLGAVVVYKIMADIFDNMDISLEYTALF 119

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA-AEQV 214
           D  T L+E    K  V     V    G       T V+ + G    +     KR  A++ 
Sbjct: 120 DTVTRLKELMDVKKDVLGGDAVYDHRGD------TTVITLKGRVIGKATGAIKRDRAKEA 173

Query: 215 A--AAEVLKREG 224
           A  A ++L+REG
Sbjct: 174 AGQALDLLRREG 185


>gi|298256113|gb|ADI71335.1| RNase III-like protein [Cod iridovirus/15/04.11.92/DNK]
          Length = 225

 Score = 53.9 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 61/192 (31%), Gaps = 25/192 (13%)

Query: 50  ILGLLISTLLFNHFDSAKEG----ELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK 105
           +      +     F           ++       S ++ S +A  L    FIR  S    
Sbjct: 2   VASYFFPSYFIKRFPQLNSPKGVKTVARLKIYYGSKKSFSSIADSLGFWKFIR--SGPVP 59

Query: 106 DVCSFMTSIQADVVESLIAA--------LYLDG-GIEVAGTFVDKYWKQRALKSG-KFRR 155
              S   S+  D  E+ + A          +DG G  V    +   +    +        
Sbjct: 60  VNPSTRESLLEDTFEAFLGAVCTAVDDEYSIDGLGAVVVYKIMADIFDNMDISLEYTALF 119

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA-AEQV 214
           D  T L+E    K  V     V    G       T V+ + G    +     KR  A++ 
Sbjct: 120 DTVTRLKELMDVKKDVLGGDAVYDHRGD------TTVITLKGRVIGKATGAIKRDRAKEA 173

Query: 215 A--AAEVLKREG 224
           A  A ++L+REG
Sbjct: 174 AGQALDLLRREG 185


>gi|134287183|ref|YP_001110879.1| RNaseIII [Heliothis virescens ascovirus 3e]
 gi|133722091|gb|ABO37213.1| RNaseIII [Heliothis virescens ascovirus 3e]
          Length = 728

 Score = 53.9 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 47/130 (36%), Gaps = 41/130 (31%)

Query: 39  SYERLEFLGDRILGLLISTLLFNHFDSA-----KEGELSVRFNSLVSAETCSQVARELDL 93
           +YE  E++GD ++   I   + +++          G ++   +  V     S+    L L
Sbjct: 207 NYEYFEYIGDSVVNRFIIDYIRDNYHGICNTAQNIGIMTKLRSIYVGKWNLSKCCVSLGL 266

Query: 94  ASFIR---VSSDLRK---------------------------------DVCSFMTSIQAD 117
             +IR   ++SD+RK                                 +V     S+  D
Sbjct: 267 HRYIRSNNINSDVRKLQAYAHRSKRNAMSNTNQPKVNADSVYTDETAANVHRDTISLLED 326

Query: 118 VVESLIAALY 127
           V+E+ + AL+
Sbjct: 327 VMEAFVGALW 336


>gi|169780854|ref|XP_001824891.1| RNase III domain protein [Aspergillus oryzae RIB40]
 gi|238504942|ref|XP_002383700.1| RNase III domain protein [Aspergillus flavus NRRL3357]
 gi|83773631|dbj|BAE63758.1| unnamed protein product [Aspergillus oryzae]
 gi|220689814|gb|EED46164.1| RNase III domain protein [Aspergillus flavus NRRL3357]
          Length = 255

 Score = 53.9 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 54/144 (37%), Gaps = 21/144 (14%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN-------------------HFDS 65
            A+TH S     +   +RL FLG RI+ L  S  +                        +
Sbjct: 108 LAVTHKSFDQGRRGFNDRLAFLGRRIVELQASLAMVQSPGSAASTAAPDEFDRVPFTHPA 167

Query: 66  AKE-GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQADVVESLI 123
            +    L+   N L+     +++A++ +L   +R S     +   S +  + A  + +++
Sbjct: 168 LEGLENLTRHKNYLIGKAQLAELAQKYELQKVLRWSPRKPNNLASSGIELVLAHTMYAIV 227

Query: 124 AALYLDGGIEVAGTFVDKYWKQRA 147
            A+ L+ G  VA     +   +  
Sbjct: 228 GAISLEKGGLVANKVTRERILEPL 251


>gi|292659036|gb|ADE34424.1| ORF80R [Turbot reddish body iridovirus]
          Length = 267

 Score = 53.9 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 77/233 (33%), Gaps = 43/233 (18%)

Query: 18  ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG-------E 70
            N  +     TH S +H    +YE  E LGD I+  ++       F              
Sbjct: 39  KNTQVFHSVFTH-SKAHPVN-NYEWYEKLGDAIIASVMPQYYMERFPKLAHDPSATVART 96

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSS-DLRKDVCSFMTSIQADVVESLIAALYLD 129
           +S    +  S  T S +A+++    ++                 +  D  E+++ A+ + 
Sbjct: 97  VSQLAITYQSGTTMSTIAQKMGFLKWVVAHRDGAAPASYKEQQRLLEDTFEAMVGAISIT 156

Query: 130 ---------GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT----PEY- 175
                     G      F+   +    ++      D K+ L+E       V      EY 
Sbjct: 157 MDDATGVKCSGHIACYRFLKYAYGLINMRLDGLI-DNKSMLKELIDMHSSVLDSFTFEYT 215

Query: 176 ----KVTFRSGPDHDPRFTV-VVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                +T   G     ++TV    ++ L        SKR  E+V A +VL + 
Sbjct: 216 NNVMTLTVAQG-----KYTVSEANVNNL--------SKRELEKVLAGKVLAQL 255


>gi|195575342|ref|XP_002105638.1| GD21592 [Drosophila simulans]
 gi|194201565|gb|EDX15141.1| GD21592 [Drosophila simulans]
          Length = 642

 Score = 53.9 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 156 DAKT---ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+    L E+        P Y+  F+   +    ++  V ++ L    G   SK+ A+
Sbjct: 366 NGKSFVCILHEYVQHALKTQPTYE--FKELQNAATPYSATVSVNNLKYGTGYGTSKKQAK 423

Query: 213 QVAAAEVLK 221
             AA E L+
Sbjct: 424 SEAARETLE 432


>gi|170051834|ref|XP_001861946.1| R2D2 [Culex quinquefasciatus]
 gi|167872902|gb|EDS36285.1| R2D2 [Culex quinquefasciatus]
          Length = 314

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
                F V PE++    SGP H P F     +  +   +G+  +K+ A+QVA  E+LK
Sbjct: 107 CVQRNFEV-PEFECVRSSGPSHAPEFEFECRVGNIVR-RGVHNTKKGAKQVACNEMLK 162



 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 7/68 (10%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDH---DPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
             TELQE    +    P Y+    +G D+      F+  V   G     G   SK+ ++ 
Sbjct: 12  PVTELQEICARRKVPLPIYE---SAGEDNSTPAKIFSTSVTALGQT-CVGHGRSKKDSKH 67

Query: 214 VAAAEVLK 221
            AA  +LK
Sbjct: 68  AAALHMLK 75


>gi|195354476|ref|XP_002043723.1| GM16438 [Drosophila sechellia]
 gi|194128923|gb|EDW50966.1| GM16438 [Drosophila sechellia]
          Length = 642

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 156 DAKT---ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+    L E+        P Y+  F+   +    ++  V ++ L    G   SK+ A+
Sbjct: 366 NGKSFVCILHEYVQHALKTQPTYE--FKELQNAATPYSATVSVNNLKYGTGYGTSKKQAK 423

Query: 213 QVAAAEVLK 221
             AA E L+
Sbjct: 424 SEAARETLE 432


>gi|70997880|ref|XP_753672.1| RNase III domain protein [Aspergillus fumigatus Af293]
 gi|66851308|gb|EAL91634.1| RNase III domain protein [Aspergillus fumigatus Af293]
 gi|159126595|gb|EDP51711.1| RNase III domain protein [Aspergillus fumigatus A1163]
          Length = 259

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 54/145 (37%), Gaps = 22/145 (15%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL------------- 71
            A+TH S     +   +RL FLG RI+ L  S  L  +  +A                  
Sbjct: 109 LAVTHKSFDQGRRGFNDRLAFLGKRIVQLQASLALVQNPGNASSSTTPDSFGREPFAHPA 168

Query: 72  --------SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQADVVESL 122
                   +   + L S    +++A++ +L   +R S     +   S +  + A  + ++
Sbjct: 169 LEGLKNLSASTKSILTSKPKLAELAQKYELQKVLRWSPRKPNNLASSGIELVLAHTMYAI 228

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA 147
           I A+ L+ G  VA     +   +  
Sbjct: 229 IGAIALERGGHVANKVARERVLEPL 253


>gi|321457595|gb|EFX68678.1| hypothetical protein DAPPUDRAFT_329840 [Daphnia pulex]
          Length = 154

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 5/69 (7%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQE-SYERLEFLGDRILGLLIS-TLLFNHFDSA 66
            E+ + Y F ++ +L +ALT     +S +  +Y+RLE +GD  L  L +           
Sbjct: 89  FEEVLSYTFNDKEVLLEALT---YGNSIRSLNYQRLEVIGDAALEFLAALQFFKQSSLYH 145

Query: 67  KEGELSVRF 75
             G++S   
Sbjct: 146 SAGDISQLR 154


>gi|195436531|ref|XP_002066221.1| GK22054 [Drosophila willistoni]
 gi|194162306|gb|EDW77207.1| GK22054 [Drosophila willistoni]
          Length = 1106

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +Y++T   GP H   FTV +++             + A+ +AA++ ++
Sbjct: 369 QYRLTGERGPAHCKTFTVTLKLGDEEY-SADGFKIKKAQHLAASKAIE 415



 Score = 52.4 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 3/73 (4%)

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVVEISGLAPA 201
           K++ L+      +  T+L +    +    P +++  ++G D   R  F + V  +G + A
Sbjct: 771 KEKLLEQLDDAENPITKLIQLQQNRKDKEPIFELIAKNGNDTSRRREFVMEVSANG-STA 829

Query: 202 QGMDCSKRAAEQV 214
           +G   SK+ A++ 
Sbjct: 830 RGTGNSKKLAKRN 842



 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           K  +T  +KV    GP H   F     + G    +G    K+ +++ +A ++L
Sbjct: 661 KRSMTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKISKKRSAEKML 712


>gi|195144392|ref|XP_002013180.1| GL23989 [Drosophila persimilis]
 gi|194102123|gb|EDW24166.1| GL23989 [Drosophila persimilis]
          Length = 387

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 5/80 (6%)

Query: 145 QRALKSGKFRRDAKT---ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201
            RA K      + K+    L E+        P Y+  F+   +    ++ +V ++ L   
Sbjct: 101 PRARKEWIMNPNGKSFVCILHEYVQHALKTQPTYE--FKELQNAATPYSAIVSVNNLKYG 158

Query: 202 QGMDCSKRAAEQVAAAEVLK 221
            G   SK+ A+  AA E L+
Sbjct: 159 TGYGTSKKQAKSEAARETLE 178


>gi|221129317|ref|XP_002161468.1| PREDICTED: similar to SON DNA binding protein [Hydra
           magnipapillata]
          Length = 173

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 1/82 (1%)

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203
           +  A  +    +   + L E    +    P+Y   F  G   +  F + V ++ +     
Sbjct: 88  RPPAPVANINGKHPVSALAELCVKRKLGIPDYTCVFEHGLAQNKNFLMKVTVANVDYQAS 147

Query: 204 MDC-SKRAAEQVAAAEVLKREG 224
           +   +K+ A+  AA   L+  G
Sbjct: 148 VASPNKKHAKANAAIVALRAMG 169


>gi|47228159|emb|CAF97788.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 189

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +      Y VT RSGP H P F V V+++G+   +G   + + A+  AA   L+
Sbjct: 18  ELRPGLSYHVTSRSGPLHAPLFAVGVDVNGVR-FEGRGPTVKRAKLRAAELALR 70


>gi|219124437|ref|XP_002182510.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405856|gb|EEC45797.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|225382102|gb|ACN89263.1| putative dicer-like protein [Phaeodactylum tricornutum]
          Length = 963

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 52/129 (40%), Gaps = 27/129 (20%)

Query: 21  SLLEKALT-HSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA--KEGELSVRFNS 77
            LL +A T H       Q  YERLEFLGD +LG  ++        S      EL +  ++
Sbjct: 508 RLLLEATTVHP------QPFYERLEFLGDAVLGFCLALNAMTRNASLEYDWEELGLVISN 561

Query: 78  LVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV------------------V 119
               +  + +    DL + +   +   K       SI+A+V                  V
Sbjct: 562 AGKNKALAAICHRADLEALVTYPNYRWKSAYRPGQSIKANVSLESQKTSDTSRFAPHEIV 621

Query: 120 ESLIAALYL 128
           ES+IA++YL
Sbjct: 622 ESVIASVYL 630


>gi|195390456|ref|XP_002053884.1| GJ23095 [Drosophila virilis]
 gi|194151970|gb|EDW67404.1| GJ23095 [Drosophila virilis]
          Length = 659

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 156 DAKT---ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+    L E+        P Y+  F+   +    ++  V ++ L    G   SK+ A+
Sbjct: 383 NGKSFVCILHEYVQHALKTQPTYE--FKELQNAATPYSATVSVNNLKYGTGYGTSKKQAK 440

Query: 213 QVAAAEVLK 221
             AA E L+
Sbjct: 441 SEAARETLE 449


>gi|289619592|emb|CBI53875.1| unnamed protein product [Sordaria macrospora]
          Length = 441

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 37/105 (35%), Gaps = 5/105 (4%)

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK---TELQEWAHAKFGVTPEYKV 177
           +++ A+Y   G E A  FV  +   R L   K   + K    EL      +    P  ++
Sbjct: 300 AVVGAIYAHCGREAAKAFVKGHIMSRTLDIAKLF-EFKYPTRELAALCAREDFEPPVARL 358

Query: 178 TFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              +G     P F V +        +G   S   A   AA   LK
Sbjct: 359 VSETGRQSRTPVFVVGIYSGSDKLGEGAGASLDHARFKAAMNALK 403



 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 38/96 (39%), Gaps = 3/96 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58
           +++ + + L  R+  +     L  L + L  +S   + Q +   L F+G  ++   I+  
Sbjct: 80  LTSAKLAALHARLNLSPK-IPLQTLARTLVDASADENPQFNNANLAFVGQTLINYHIAEW 138

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLA 94
           L   +    +G L     +    +   Q+AR   + 
Sbjct: 139 LLCKYPRLPQGILFSAMKAYAGPKPLLQIARSWGVD 174


>gi|195445903|ref|XP_002070536.1| GK12111 [Drosophila willistoni]
 gi|194166621|gb|EDW81522.1| GK12111 [Drosophila willistoni]
          Length = 649

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 156 DAKT---ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+    L E+        P Y+  F+   +    ++  V ++ L    G   SK+ A+
Sbjct: 373 NGKSFVCILHEYVQHALKTQPTYE--FKELQNAATPYSATVSVNNLKYGTGYGTSKKQAK 430

Query: 213 QVAAAEVLK 221
             AA E L+
Sbjct: 431 SEAARETLE 439


>gi|2415555|emb|CAA04303.1| ribonuclease III [Campylobacter jejuni]
          Length = 73

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 3/75 (4%)

Query: 15 YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE-LSV 73
          YAF + +    ALTH S   SY  + ERL  +GD +L L++   LF++         +  
Sbjct: 1  YAFPDTNHFIPALTHKSFKKSY--NNERLVLIGDAVLDLVVGEYLFHNIRQRCRRRFILS 58

Query: 74 RFNSLVSAETCSQVA 88
              +V+ ++ + +A
Sbjct: 59 LEQVVVNEKSFATIA 73


>gi|294655348|ref|XP_457483.2| DEHA2B12166p [Debaryomyces hansenii CBS767]
 gi|199429888|emb|CAG85487.2| DEHA2B12166p [Debaryomyces hansenii]
          Length = 611

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 78/232 (33%), Gaps = 38/232 (16%)

Query: 18  ANRSLLEKALTHSSISHS------------YQESYERLEFLGDRILGLLISTLLFNHFDS 65
           +N SLL K LT  S                 +    +L   G R+L   +  +L      
Sbjct: 152 SNESLLNKILTDKSFRQPADFLESNDANDFNRSHNAKLGLRGKRLLEFALIEILDEKLPD 211

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             E +L      LVS    +++A   +LA   +       ++   +    +++  + I  
Sbjct: 212 IHEDDLYYLQFKLVSTSILTKLAFGYNLADNYKFHFSKEMNLDDKLAK-LSNIFLAYIGG 270

Query: 126 LYLDG-GIEVAGTFVDKYWKQRALKSGKFRRD-----AKTELQEWAHAKFGVTPEYKV-- 177
           L LDG        ++ K ++   ++      D      K  L E +     VT  Y +  
Sbjct: 271 LALDGYSFAEIKLWIAKLYEP-IIQDFNENNDTLKPLNKLALIELSFLFKQVTNMYYIPQ 329

Query: 178 --------TFRSGPDHDPRFTVVVEISGLAPAQGMDCSK--RAAEQVAAAEV 219
                   T  + P     + V + I+G     G   S     A+  AA++ 
Sbjct: 330 QQTTLQFDTLETDP-----YVVKLSINGQTLGIGT-SSIGVEEAKVRAASDA 375



 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 6/76 (7%)

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
               +AK  L     +    TP Y+ +   G D    F V + ++ +     +D +K+AA
Sbjct: 536 PLDNNAKNTLYAVLGSNHL-TPVYRFSKV-GND----FQVSILVNDIVIGTSVDSNKKAA 589

Query: 212 EQVAAAEVLKREGIWT 227
            Q AA   L  + +  
Sbjct: 590 SQRAAMNALSNKSLLN 605


>gi|195108545|ref|XP_001998853.1| GI23404 [Drosophila mojavensis]
 gi|193915447|gb|EDW14314.1| GI23404 [Drosophila mojavensis]
          Length = 655

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 156 DAKT---ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+    L E+        P Y+  F+   +    ++  V ++ L    G   SK+ A+
Sbjct: 379 NGKSFVCILHEYVQHALKTQPTYE--FKELQNAATPYSATVSVNNLKYGTGYGTSKKQAK 436

Query: 213 QVAAAEVLK 221
             AA E L+
Sbjct: 437 SEAARETLE 445


>gi|224143640|ref|XP_002336063.1| predicted protein [Populus trichocarpa]
 gi|222869864|gb|EEF06995.1| predicted protein [Populus trichocarpa]
          Length = 155

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVA 215
            K++LQ     +    P Y+VT + G DH+P F+  V ++     +     S + A+  A
Sbjct: 2   YKSKLQAVCQQRGWELPTYQVTKQ-GKDHNPLFSATVTVNATSFSSPSPSSSSKTAQSDA 60

Query: 216 AAEV 219
           A   
Sbjct: 61  AKLA 64


>gi|115313587|gb|AAI24420.1| Dgcr8 protein [Danio rerio]
          Length = 578

 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+E   L E+      V P Y       P  +P F   V I G+    G+  SK+ A+
Sbjct: 313 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVIIDGVTYGTGIASSKKLAK 370

Query: 213 QVAAAEVLK 221
             AA   L+
Sbjct: 371 NKAARATLE 379


>gi|242005452|ref|XP_002423579.1| tRNA-dihydrouridine synthase, putative [Pediculus humanus corporis]
 gi|212506727|gb|EEB10841.1| tRNA-dihydrouridine synthase, putative [Pediculus humanus corporis]
          Length = 409

 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 6/71 (8%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVA 215
            KT+L  WA  +    P+Y  T       D  F  +V ++G        + +KR AEQ A
Sbjct: 332 PKTKLLTWARHRNLEPPKYTTTQE-----DKLFQSIVTVNGKNYGSSYWEKNKRWAEQSA 386

Query: 216 AAEVLKREGIW 226
           A   L   G+ 
Sbjct: 387 AIVGLVNLGLL 397


>gi|159795592|pdb|2YT4|A Chain A, Crystal Structure Of Human Dgcr8 Core
          Length = 232

 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 5/69 (7%)

Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+E   L E+      V P Y       P     F   V I G+    G   SK+ A+
Sbjct: 20  NGKSEVCILHEYMQRVLKVRPVYNFFECENPSEP--FGASVTIDGVTYGSGTASSKKLAK 77

Query: 213 QVAAAEVLK 221
             AA   L+
Sbjct: 78  NKAARATLE 86


>gi|158290824|ref|XP_312385.4| AGAP002554-PA [Anopheles gambiae str. PEST]
 gi|157018083|gb|EAA08039.4| AGAP002554-PA [Anopheles gambiae str. PEST]
          Length = 648

 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 156 DAKT---ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+    L E+        P Y+  F+   +    ++  V I+ L    G   SK+ A+
Sbjct: 373 NGKSYVCILHEYVQHALRKQPTYE--FKELENAATPYSATVTINELKYGTGYGTSKKQAK 430

Query: 213 QVAAAEVLK 221
             AA E L+
Sbjct: 431 SEAARETLE 439


>gi|22164648|ref|NP_671561.1| EVM043 [Ectromelia virus]
 gi|22123789|gb|AAM92347.1|AF523264_43 EVM043 [Ectromelia virus]
 gi|14488161|emb|CAC42116.1| dsRNA binding protein [Ectromelia virus]
          Length = 190

 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 7/82 (8%)

Query: 147 ALKSGKFRRDAK-----TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201
            +   K   D K     T + E+          +++    GP + P F   V+I G    
Sbjct: 103 DVIPAKKIIDWKNANPVTIINEYCQITKRDW-SFRIESV-GPSNSPIFYACVDIDGRVFD 160

Query: 202 QGMDCSKRAAEQVAAAEVLKRE 223
           +    +KR A+  AA   + + 
Sbjct: 161 KADGKTKRDAKNNAAKLAVDKL 182


>gi|126324741|ref|XP_001376883.1| PREDICTED: similar to DiGeorge syndrome critical region gene 8
           [Monodelphis domestica]
          Length = 907

 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+E   L E+      V P Y       P  +P F   V I G+    G   SK+ A+
Sbjct: 642 NGKSEVCILHEYMQRVLKVRPVYTFFECENPS-EP-FGASVTIDGVTYGAGTASSKKLAK 699

Query: 213 QVAAAEVLK 221
             AA   L+
Sbjct: 700 NKAARATLE 708


>gi|195475660|ref|XP_002090102.1| GE19435 [Drosophila yakuba]
 gi|194176203|gb|EDW89814.1| GE19435 [Drosophila yakuba]
          Length = 1283

 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213
            D K+ L E+  AK  V P++    ++GP +  RF   V +   +    G   +K+ AE+
Sbjct: 1   MDIKSFLYEFC-AKSRVEPKFD-IRQTGPKNRQRFLCEVRVDPNIYIGVGNSTNKKDAEK 58

Query: 214 VAAAE 218
            A  +
Sbjct: 59  NACRD 63



 Score = 36.6 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI-----SGLAPAQGMDCSKRA 210
           +AK  L  +  A      +YK T   GPDH   F   + I          A+    +K++
Sbjct: 169 NAKDRLNMYKQANNIRD-DYKYTPV-GPDHARSFMAELSIYVPALKRKVTARETGSNKKS 226

Query: 211 AEQVAAAEVLKRE 223
           A +  A  ++++ 
Sbjct: 227 ASKSCALSLVRQL 239


>gi|168984491|emb|CAO98759.1| double-stranded RNA activated protein kinase 1 [Gasterosteus
           aculeatus]
          Length = 497

 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
            L E    +  V   Y+     G DH   FTV   + G     G+  +KR 
Sbjct: 5   RLNELTQKQRLV-VRYEDVGCVGLDHIKTFTVRAVVDGKPYPDGVGKNKRE 54


>gi|114685163|ref|XP_514988.2| PREDICTED: DiGeorge syndrome critical region gene 8 isoform 8 [Pan
           troglodytes]
          Length = 416

 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 5/69 (7%)

Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+E   L E+      V P Y       P     F   V I G+    G   SK+ A+
Sbjct: 151 NGKSEVCILHEYMQRVLKVRPVYNFFECENPSEP--FGASVTIDGVTYGSGTASSKKLAK 208

Query: 213 QVAAAEVLK 221
             AA   L+
Sbjct: 209 NKAARATLE 217


>gi|194741724|ref|XP_001953337.1| GF17708 [Drosophila ananassae]
 gi|190626396|gb|EDV41920.1| GF17708 [Drosophila ananassae]
          Length = 321

 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/240 (21%), Positives = 84/240 (35%), Gaps = 43/240 (17%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQE---------------SYERLEFLGDRILGLLI 55
           KR+G +F    LL++A T  + +   +E                 E L   G  I    +
Sbjct: 72  KRLGESFQ-LPLLQRAFTEKAFARVEEEKRRKLGIEENDLHILDNEDLVEKGRHISKAYV 130

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
              L +      +  L    N L+S +T + V+  L     I        +      S  
Sbjct: 131 EAFLQHQMPKVPKEGLVEISNHLLSTDTLAHVSSHLGTKDLIH-----STEYPPSKES-L 184

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYW----KQRALKSGKFRRDAKTELQ---EWAHAK 168
           A+ ++++I AL    G+E A  FV  +      Q+ L       +    LQ   +    +
Sbjct: 185 AESLQAVIGALADSSGVERAFLFVRDFICTQLNQKDLLDIWTPEEP---LQLLEKICAER 241

Query: 169 FGVTPEYKVTFRSGPDHDPRFTV----VVEISG--LAPAQGMDCSKRAAEQVAAAEVLKR 222
               PE ++    G +     TV     V I G      QG     + A + AA + L+R
Sbjct: 242 KLGDPEPRLLGDCGKN-----TVLAAYQVGIYGNRQLLGQGFGEDVQTATETAAIDALQR 296


>gi|224064274|ref|XP_002192167.1| PREDICTED: dihydrouridine synthase 2-like, SMM1 homolog (S.
           cerevisiae) [Taeniopygia guttata]
          Length = 490

 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVA 215
            K  L EW   +    P Y+   R     D  F  VV ++     +   D SK+ AEQ A
Sbjct: 367 PKMYLLEWCRKEKHPQPVYETVQR---PLDRLFCSVVTVAEQKYRSTLWDKSKKLAEQAA 423

Query: 216 AAEVLKREGI 225
           A   L+  G+
Sbjct: 424 AIVCLRTLGV 433


>gi|221114347|ref|XP_002163095.1| PREDICTED: similar to SON DNA-binding protein isoform F (predicted)
           [Hydra magnipapillata]
          Length = 629

 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 1/82 (1%)

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203
           +  A  +    +   + L E    +    P+Y   F  G   +  F + V ++ +     
Sbjct: 544 RPPAPVANINGKHPVSALAELCVKRKLGIPDYTCVFEHGLAQNKNFLMKVTVANVDYQAS 603

Query: 204 MDC-SKRAAEQVAAAEVLKREG 224
           +   +K+ A+  AA   L+  G
Sbjct: 604 VASPNKKHAKANAAIVALRAMG 625


>gi|194864148|ref|XP_001970794.1| GG10841 [Drosophila erecta]
 gi|190662661|gb|EDV59853.1| GG10841 [Drosophila erecta]
          Length = 1304

 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213
            D K+ L E+  AK  + P++    ++GP +  RF   V +   +    G   +K+ AE+
Sbjct: 1   MDIKSFLYEFC-AKSRIEPKFD-IRQTGPKNRQRFLCEVRVDPNIYIGVGNSTNKKDAEK 58

Query: 214 VAAAE 218
            A  +
Sbjct: 59  NACRD 63


>gi|170063939|ref|XP_001867321.1| partner of drosha [Culex quinquefasciatus]
 gi|167881396|gb|EDS44779.1| partner of drosha [Culex quinquefasciatus]
          Length = 683

 Score = 53.2 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 156 DAKT---ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+    L E+        P Y+  F+   +    ++  V I+ L    G   SK+ A+
Sbjct: 396 NGKSYVCILHEYVQHALRKQPSYE--FKELENAATPYSATVSINELKYGTGYGTSKKQAK 453

Query: 213 QVAAAEVLK 221
             AA E L+
Sbjct: 454 SEAARETLE 462



 Score = 39.3 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 8/66 (12%)

Query: 159 TELQEWAHAKFG---VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           T LQ      FG   V  +Y V  ++G      FT+ V   G   A  +  +KR  +Q A
Sbjct: 530 TILQTCLQRNFGLGDVQIQYDV--KTGKHRKNEFTMTV---GKHTATVVCKNKRDGKQQA 584

Query: 216 AAEVLK 221
           A ++L+
Sbjct: 585 AQKILQ 590


>gi|326929530|ref|XP_003210916.1| PREDICTED: microprocessor complex subunit DGCR8-like [Meleagris
           gallopavo]
          Length = 709

 Score = 53.2 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+E   L E+      V P Y       P  +P F   V I G+    G   SK+ A+
Sbjct: 444 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVIIDGVTYGAGTASSKKLAK 501

Query: 213 QVAAAEVLK 221
             AA   L+
Sbjct: 502 NKAARATLE 510


>gi|328778714|ref|XP_397444.4| PREDICTED: microprocessor complex subunit DGCR8-like [Apis
           mellifera]
          Length = 638

 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+        P YK  F+   +    ++ VV I+ +    G   SK+ A+  AA + L
Sbjct: 363 LHEYVQHALKKQPTYK--FKELENAATPYSAVVCINDMEYGSGFGSSKKQAKANAARKTL 420

Query: 221 K 221
           +
Sbjct: 421 E 421


>gi|157129346|ref|XP_001655380.1| double-stranded binding protein, putative [Aedes aegypti]
 gi|108882115|gb|EAT46340.1| double-stranded binding protein, putative [Aedes aegypti]
          Length = 564

 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 156 DAKT---ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+    L E+        P Y+  F+   +    ++  V I+ L    G   SK+ A+
Sbjct: 286 NGKSYVCILHEYVQHALRKQPSYE--FKELENAATPYSATVSINELKYGTGYGTSKKQAK 343

Query: 213 QVAAAEVLK 221
             AA E L+
Sbjct: 344 SEAARETLE 352


>gi|71415984|ref|XP_810039.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70874513|gb|EAN88188.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 220

 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 64/168 (38%), Gaps = 27/168 (16%)

Query: 7   STLEKRIGYAF-----ANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLL 59
           S L +R+   F      +  L  +A  H S   S +   +      +G+ +L  +   L+
Sbjct: 52  SELSRRLQKQFPEIKRQHHVLYLRAFIHPSFTTSDAMNSTMNATTSIGEALLASVGECLI 111

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRV--------SSDLRKDVC-- 108
            N F   K  E+ +  + L+S  T S V R   ++   +             LR      
Sbjct: 112 VNAFRDLKRDEVLLLMSFLLSDATLSSVLRYHWEMEDMVLTDASVQLFQGKTLRSTAGLM 171

Query: 109 ---SFMTSIQ------ADVVESLIAALYLDGGIEVAGTFVDKYWKQRA 147
              S     Q      A  V+S+I A+YLD G+E A  F+ K+  Q  
Sbjct: 172 QWLSSNGKQQTPDPYCAGCVKSMIGAVYLDRGLEEAAAFIYKHVLQNI 219


>gi|198452925|ref|XP_001358999.2| GA14761 [Drosophila pseudoobscura pseudoobscura]
 gi|198132136|gb|EAL28142.2| GA14761 [Drosophila pseudoobscura pseudoobscura]
          Length = 651

 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 5/80 (6%)

Query: 145 QRALKSGKFRRDAKT---ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA 201
            RA K      + K+    L E+        P Y+  F+   +    ++ +V ++ L   
Sbjct: 365 PRARKEWIMNPNGKSFVCILHEYVQHALKTQPTYE--FKELQNAATPYSAIVSVNNLKYG 422

Query: 202 QGMDCSKRAAEQVAAAEVLK 221
            G   SK+ A+  AA E L+
Sbjct: 423 TGYGTSKKQAKSEAARETLE 442


>gi|170101206|ref|XP_001881820.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164643175|gb|EDR07428.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 157

 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           G  P+Y +T  SG  H P +T    + G     G   SKR A+  AA + +   
Sbjct: 69  GYLPQYALT-VSGTRHQPIWTCAASLDGQMIGLGEGRSKRVAQDEAARQAIINL 121


>gi|10438400|dbj|BAB15238.1| unnamed protein product [Homo sapiens]
 gi|37779134|gb|AAO86726.1| LP4941 protein [Homo sapiens]
          Length = 303

 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 5/69 (7%)

Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+E   L E+      V P Y       P     F   V I G+    G   SK+ A+
Sbjct: 38  NGKSEVCILHEYMQRVLKVRPVYNFFECENPSEP--FGASVTIDGVTYGSGTASSKKLAK 95

Query: 213 QVAAAEVLK 221
             AA   L+
Sbjct: 96  NKAARATLE 104


>gi|226291271|gb|EEH46699.1| 54S ribosomal protein L3 [Paracoccidioides brasiliensis Pb18]
          Length = 394

 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 45/266 (16%), Positives = 83/266 (31%), Gaps = 60/266 (22%)

Query: 1   MSALRYSTLEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58
           +++ + + L  R+        L  L + L   S+  S Q + + L  LG  +L    S  
Sbjct: 80  LNSPKLAALHARLSL-PRRLPLQTLARTLVDESVDPSPQFNNKSLSILGGDLLTYYTSEH 138

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL------------------------- 93
           L + +       L     S + A+  + + RE  L                         
Sbjct: 139 LISTYPRLPIKVLWAAMYSYIGAKPLAAMTREWGLEFIADPGAEVDPGFLQFKRLPPDTE 198

Query: 94  ------ASFIRVSSDLRKD--------VCSFMTSIQ---------------ADVVESLIA 124
                  +F++   +L K           +F  S                 A+ V +++ 
Sbjct: 199 VKTNANGTFLKPDGNLSKRSTSARIIYGDAFGESALPYPVQYEGVTPNRACANFVRAVMG 258

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
           A+YL  G   A  F  +++  R L        R    +L +    +    P  K+   +G
Sbjct: 259 AVYLHAGRPAAKLFFKEHFMSRYLNMASLFSFRQPTRDLSKLCRREGFEDPVAKILSETG 318

Query: 183 P-DHDPRFTVVVEISGLAPAQGMDCS 207
              + P F V +        +G   S
Sbjct: 319 RLSNRPVFNVGIFSGPDKLGEGAGGS 344


>gi|256052736|ref|XP_002569908.1| hypothetical protein [Schistosoma mansoni]
 gi|227284660|emb|CAY17406.1| expressed protein [Schistosoma mansoni]
          Length = 732

 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+        P Y+ T     + +P + + V I+G     G   SK+ A   AA + L
Sbjct: 447 LHEYCQNVIRRPPTYQTTVLE-NEKNP-YQMTVFINGNPYGTGAGQSKKCARLEAARKAL 504

Query: 221 K 221
           +
Sbjct: 505 E 505


>gi|146420287|ref|XP_001486100.1| hypothetical protein PGUG_01771 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 617

 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 74/203 (36%), Gaps = 19/203 (9%)

Query: 19  NRSLLEKALTHSSISHSY------------QESYERLEFLGDRILGLLISTLLFNHFDSA 66
           N +L ++  TH S                 Q   E+L   G  +L + +  LL   F  A
Sbjct: 152 NTNLRKRVFTHKSYRQISDFLEADSAEEFAQAHNEKLVLHGRSLLNVALLHLLDKKFPKA 211

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
           +  ++ +    L S+   +++A   +L+  ++ +             +   V  + + AL
Sbjct: 212 QAEDIELMKVRLSSSVVLTKMAMGYNLSQHLKHNISKELSN-EGKVLVLLTVFLAYLGAL 270

Query: 127 YLDG-GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           + +G  ++    +++K +     +       +   L  ++  KF + P  K   +SG  H
Sbjct: 271 FSEGYSMDEICLWIEKLYDPIVAEFDSEHMHSARPL-AYSELKFLLDPHLKF-KQSG--H 326

Query: 186 DPRFTVVVEISGLAPAQGMDCSK 208
           DP FT            G    K
Sbjct: 327 DP-FTFKAYYRDTVIGIGSHSDK 348


>gi|58264878|ref|XP_569595.1| hypothetical protein CNC03680 [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|57225827|gb|AAW42288.1| hypothetical protein CNC03680 [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 839

 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 66/182 (36%), Gaps = 42/182 (23%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           MSA  ++++         +  L  +A+T +   +  + +YERLE LGD +L  + +   +
Sbjct: 489 MSAKEFNSIL--------DPELALQAITAAEGLNVPRWTYERLEILGDTLLKFMTTLHFY 540

Query: 61  NHFDSA-KEGELSVR---FNSLVSAETCSQVARELDLASFIRVSSDLRK----------- 105
                A  E +++      + L+S  T +  A +  L  ++R      K           
Sbjct: 541 LLGGGADSEDDMNKVWQDRHMLISNRTLTANAVKQGLVKYVRNKKFKVKEWTPRDWELDL 600

Query: 106 ---------------DVCSFM---TSIQADVVESLIAALYL-DGGIEVAGTFVDKYWKQR 146
                          D          + AD++E++I A Y+ +  ++     +       
Sbjct: 601 LPGQFAPKKTMPTSFDGPESRVLGDKVIADIIEAIIGASYMPNKDLDSVIAILHHLMVPL 660

Query: 147 AL 148
            L
Sbjct: 661 NL 662



 Score = 51.6 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 5/116 (4%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
           + +GY F +    E A + +  +   +   ER + +G+ +L L +  LL + +       
Sbjct: 699 EVLGYKFKDNKKFEDAFSLA-PAQQTRRIRERYKMMGNALLDLYVIELLMDSYPDEGPAS 757

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIR----VSSDLRKDVCSFMTSIQADVVESL 122
           LS+   S  +      +A EL ++  I      S    K    FM   +A   E L
Sbjct: 758 LSIMKLSRTTEGLRCALAVELGMSDLIIDGDDHSRSELKRATHFMQKAKAQADEDL 813


>gi|134109495|ref|XP_776862.1| hypothetical protein CNBC3530 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50259542|gb|EAL22215.1| hypothetical protein CNBC3530 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 839

 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 66/182 (36%), Gaps = 42/182 (23%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           MSA  ++++         +  L  +A+T +   +  + +YERLE LGD +L  + +   +
Sbjct: 489 MSAKEFNSIL--------DPELALQAITAAEGLNVPRWTYERLEILGDTLLKFMTTLHFY 540

Query: 61  NHFDSA-KEGELSVR---FNSLVSAETCSQVARELDLASFIRVSSDLRK----------- 105
                A  E +++      + L+S  T +  A +  L  ++R      K           
Sbjct: 541 LLGGGADSEDDMNKVWQDRHMLISNRTLTANAVKQGLVKYVRNKKFKVKEWTPRDWELDL 600

Query: 106 ---------------DVCSFM---TSIQADVVESLIAALYL-DGGIEVAGTFVDKYWKQR 146
                          D          + AD++E++I A Y+ +  ++     +       
Sbjct: 601 LPGQFAPKKTMPTSFDGPESRVLGDKVIADIIEAIIGASYMPNKDLDSVIAILHHLMVPL 660

Query: 147 AL 148
            L
Sbjct: 661 NL 662



 Score = 51.6 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 5/116 (4%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
           + +GY F +    E A + +  +   +   ER + +G+ +L L +  LL + +       
Sbjct: 699 EVLGYKFKDNKKFEDAFSLA-PAQQTRRIRERYKMMGNALLDLYVIELLMDSYPDEGPAS 757

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIR----VSSDLRKDVCSFMTSIQADVVESL 122
           LS+   S  +      +A EL ++  I      S    K    FM   +A   E L
Sbjct: 758 LSIMKLSRTTEGLRCALAVELGMSDLIIDGDDHSRSELKRATHFMQKAKAQADEDL 813


>gi|328854071|gb|EGG03206.1| hypothetical protein MELLADRAFT_109487 [Melampsora larici-populina
           98AG31]
          Length = 534

 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 46/126 (36%), Gaps = 7/126 (5%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
             LE ++ Y F + +LL  AL     S        RL++LG+ IL    +  L +    +
Sbjct: 379 KELEAKLKYKFNDINLLRNAL-----SRKNLRENRRLKWLGEAILDDWTTYALKDVLVKS 433

Query: 67  KEGELSVRFNSLVSAETCSQVAREL--DLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
                      +    T S  AR     +   +             +T  QAD+V  LIA
Sbjct: 434 PRRRPLHALAYMHWNATLSTWARRWLQPIKGLVESKIFEVNKDGRALTKTQADLVLVLIA 493

Query: 125 ALYLDG 130
            + +D 
Sbjct: 494 VMCIDC 499


>gi|159163360|pdb|1WHN|A Chain A, Solution Structure Of The Dsrbd From Hypothetical Protein
           Bab26260
          Length = 128

 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVA 215
            K  L EW   +    P Y+   R+    D  F  VV ++     +   D SK+ AEQ A
Sbjct: 28  PKMCLLEWCRREKLPQPVYETVQRTI---DRMFCSVVTVAEQKYQSTLWDKSKKLAEQTA 84

Query: 216 AAEVLKREGI 225
           A   L+ +G+
Sbjct: 85  AIVCLRSQGL 94


>gi|58332600|ref|NP_001011374.1| mitochondrial ribosomal protein L44 [Xenopus (Silurana) tropicalis]
 gi|56789566|gb|AAH88549.1| hypothetical LOC496841 [Xenopus (Silurana) tropicalis]
          Length = 322

 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 74/221 (33%), Gaps = 31/221 (14%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQ-----------------ESYERLEFLGDRI 50
              +R+  +F+   LL+ A  + +     +                 +  E L  +G   
Sbjct: 64  AFSQRLNESFS-IQLLKTAFVNKTYVEQEEQRRQELGLDKEMAMLNLQDNEELAGVGSDF 122

Query: 51  LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110
               +   L + F +     +    + L S E  + VA+ L +      S      +  +
Sbjct: 123 TATYLQKTLEHGFPNLPPDGIKSLVDHLSSQEVINHVAQNLAVEDLALGSECPLDPLTVY 182

Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR----DAKTEL-QEWA 165
            T        ++I AL    G + AG F+  +   + +    F      D  + L QE +
Sbjct: 183 RT------FFAIIGALLQSSGTQRAGLFIRDFLLAQLIGKDLFDIWLIADPMSLLVQELS 236

Query: 166 HAKFGVTPEYKVTFRSGPDH-DPRFTVVVEISGLAPAQGMD 205
           H +    PE ++T   G     P + V +       A+G  
Sbjct: 237 H-RNLPLPEPRLTRECGAATVLPVYFVGLYCDKKLIAEGPG 276


>gi|110625595|ref|NP_079794.1| tRNA-dihydrouridine synthase 2-like [Mus musculus]
 gi|73620836|sp|Q9D7B1|DUS2L_MOUSE RecName: Full=tRNA-dihydrouridine synthase 2-like
 gi|12844161|dbj|BAB26260.1| unnamed protein product [Mus musculus]
 gi|109733553|gb|AAI16937.1| Dihydrouridine synthase 2-like (SMM1, S. cerevisiae) [Mus musculus]
 gi|109733887|gb|AAI16935.1| Dihydrouridine synthase 2-like (SMM1, S. cerevisiae) [Mus musculus]
 gi|148679394|gb|EDL11341.1| mCG20459, isoform CRA_b [Mus musculus]
          Length = 493

 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVA 215
            K  L EW   +    P Y+   R+    D  F  VV ++     +   D SK+ AEQ A
Sbjct: 370 PKMCLLEWCRREKLPQPVYETVQRTI---DRMFCSVVTVAEQKYQSTLWDKSKKLAEQTA 426

Query: 216 AAEVLKREGI 225
           A   L+ +G+
Sbjct: 427 AIVCLRSQGL 436


>gi|50756249|ref|XP_415079.1| PREDICTED: similar to DiGeorge syndrome critical region gene 8
           [Gallus gallus]
          Length = 775

 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+E   L E+      V P Y       P  +P F   V I G+    G   SK+ A+
Sbjct: 510 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVIIDGVTYGAGTASSKKLAK 567

Query: 213 QVAAAEVLK 221
             AA   L+
Sbjct: 568 NKAARATLE 576


>gi|85108136|ref|XP_962512.1| hypothetical protein NCU08299 [Neurospora crassa OR74A]
 gi|28924120|gb|EAA33276.1| hypothetical protein NCU08299 [Neurospora crassa OR74A]
          Length = 439

 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 37/105 (35%), Gaps = 5/105 (4%)

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK---TELQEWAHAKFGVTPEYKV 177
           +++ A+Y   G E A  FV  +   R L   K   + K    EL      +    P  ++
Sbjct: 298 AVVGAIYAHCGREAAKAFVKAHIMSRTLDIAKLF-EFKYPTRELAALCAREDFEPPVARL 356

Query: 178 TFRSG-PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              +G     P F V +        +G   S   A   AA   LK
Sbjct: 357 LSETGRQSRTPVFVVGIYSGSDKLGEGAASSLDHARFKAAMNALK 401



 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 38/96 (39%), Gaps = 3/96 (3%)

Query: 1   MSALRYSTLEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58
           +++ + + L  R+  +     L  L + L  +S   + Q +   L F+G  ++   I+  
Sbjct: 80  LTSAKLAALHARLNLSPK-IPLQTLARTLVDASADENPQFNNANLAFVGQTLINYHIAEW 138

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLA 94
           L   +    +G L     +    +   Q+AR   + 
Sbjct: 139 LLCKYPRLPQGILFSAMKAYAGPKPLLQIARSWGVD 174


>gi|71668496|ref|XP_821128.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70886497|gb|EAN99277.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 220

 Score = 53.2 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 65/168 (38%), Gaps = 27/168 (16%)

Query: 7   STLEKRIGYAF-----ANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLL 59
           S L +R+   F      +  L  +A  H S   S +   +      +G+ +L  +   L+
Sbjct: 52  SELSRRLQKQFPEIKRQHHVLYLRAFIHPSFTTSDAMNSTMNATTSIGEALLASVGECLI 111

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSI---- 114
            N F   K  E+ +  + L+S  T S V R   ++   +   + ++      + S     
Sbjct: 112 VNAFRDLKRDEVLLLMSFLLSDATLSSVLRYHWEMEDMVLTDASVQLFQGKTLRSTAGLM 171

Query: 115 ---------------QADVVESLIAALYLDGGIEVAGTFVDKYWKQRA 147
                           A  V+S+I A+YLD G+E A  F+ K+  Q  
Sbjct: 172 QWLSSSGKQQTPDPYCAGCVKSMIGAVYLDRGLEEAAAFIYKHVLQNI 219


>gi|47218120|emb|CAG09992.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 302

 Score = 52.8 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
           LQE A  +    PEY +   +GP H   FTV   + 
Sbjct: 125 LQELALQRGWPLPEYTLLTEAGPPHMREFTVSCRLE 160



 Score = 41.6 bits (97), Expect = 0.087,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 5/53 (9%)

Query: 158 KTELQEWAHA---KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           KT +Q   H    + GV P Y +    G  H P F   V+I       G   S
Sbjct: 29  KTPIQ-ILHEYGIRSGVLPVYVMERAEGEAHQPSFVFTVKIQ-EVTCTGQGPS 79


>gi|72392539|ref|XP_847070.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|62175606|gb|AAX69739.1| hypothetical protein Tb927.8.2370 [Trypanosoma brucei]
 gi|70803100|gb|AAZ13004.1| hypothetical protein Tb927.8.2370 [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 1648

 Score = 52.8 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 52/129 (40%), Gaps = 18/129 (13%)

Query: 19  NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           +++LL+ A T        +++YE LEF+GD I+  ++     +      E         L
Sbjct: 715 DKTLLKWATTRE--CEDKEQNYEILEFIGDAIMDFIV----VSDSFLLGEPWHKDVNTKL 768

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSFMT--SIQADVVESLIAALYLDG-GIEVA 135
              E  + +         I                  ++AD+VES++ A+Y  G G++  
Sbjct: 769 CCNEVLATL---------IPPGLSEELSRVYDEVHYKVKADMVESILGAVYQSGMGLDEV 819

Query: 136 GTFVDKYWK 144
              + ++++
Sbjct: 820 RKQLRRFFR 828


>gi|169624489|ref|XP_001805650.1| hypothetical protein SNOG_15504 [Phaeosphaeria nodorum SN15]
 gi|160705181|gb|EAT77169.2| hypothetical protein SNOG_15504 [Phaeosphaeria nodorum SN15]
          Length = 198

 Score = 52.8 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 51/137 (37%), Gaps = 20/137 (14%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK----------------- 67
            A+TH S  H  +   +RL +LG RI+ L  S  L +    A+                 
Sbjct: 48  LAVTHKSFEHGKRGFNDRLAYLGRRIVELQTSQALISSPQEAQAETDEFGRIPFQHPALI 107

Query: 68  --EGELSVRFNSLVSAETCSQVARELDLASFIRVS-SDLRKDVCSFMTSIQADVVESLIA 124
             +G      + ++     +Q+A    L    R +         S + S+    + +++ 
Sbjct: 108 GLQGLSDEAQSKILDKARLAQIAERYGLDKVTRWTPKRADNLQGSGIESVLMTSLYAIVG 167

Query: 125 ALYLDGGIEVAGTFVDK 141
           A+ L+ G E A   V +
Sbjct: 168 AIALERGGEAANKVVQE 184


>gi|261330250|emb|CBH13234.1| T. brucei spp.-specific protein [Trypanosoma brucei gambiense
           DAL972]
          Length = 1648

 Score = 52.8 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 52/129 (40%), Gaps = 18/129 (13%)

Query: 19  NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           +++LL+ A T        +++YE LEF+GD I+  ++     +      E         L
Sbjct: 715 DKTLLKWATTRE--CEDKEQNYEILEFIGDAIMDFIV----VSDSFLLGEPWHKDVNTKL 768

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSFMT--SIQADVVESLIAALYLDG-GIEVA 135
              E  + +         I                  ++AD+VES++ A+Y  G G++  
Sbjct: 769 CCNEVLATL---------IPPGLSEELSRVYDEVHYKVKADMVESILGAVYQSGMGLDEV 819

Query: 136 GTFVDKYWK 144
              + ++++
Sbjct: 820 RKQLRRFFR 828


>gi|226502082|ref|NP_001146877.1| RNA binding protein [Zea mays]
 gi|195604576|gb|ACG24118.1| RNA binding protein [Zea mays]
          Length = 179

 Score = 52.8 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 57/145 (39%), Gaps = 9/145 (6%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            + L+ R+GYAF   +LL +A+THSS SH    +   L            +         
Sbjct: 37  LAALQSRVGYAFRAPALLRRAMTHSSYSHENGRALAVLGL---AAAESAAALRALAADAD 93

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A    +S   +   S   C++    + +   +RVS        +   ++    + +L+ A
Sbjct: 94  AAPSAVSRAASEAASGPACARAGARIGIPDVVRVS----GQTSAAAPTVVCSALRALVGA 149

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKS 150
           + +D     A   V  +W+  AL S
Sbjct: 150 VAVDANSTDAAGEV--FWRLHALTS 172


>gi|189241606|ref|XP_972567.2| PREDICTED: similar to adenosine deaminase [Tribolium castaneum]
 gi|270000868|gb|EEZ97315.1| hypothetical protein TcasGA2_TC011126 [Tribolium castaneum]
          Length = 850

 Score = 52.8 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 3/63 (4%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
           +      D KT   E +        +Y +    GP H P F + V+++      G   SK
Sbjct: 87  EPEIDNIDLKTS--EISIDDLKSVLKYTLVEEIGPSHAPTFKMAVKVNEKIY-YGKGGSK 143

Query: 209 RAA 211
           + A
Sbjct: 144 QKA 146



 Score = 52.0 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 30/79 (37%), Gaps = 7/79 (8%)

Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
              ++       ++    + D K     +         +Y++  ++GPDH P F +  ++
Sbjct: 247 QKLINDNLINVQIEPMTVKTDPK-----YV-ENTYSLLKYRLVEQTGPDHKPTFKMAAKV 300

Query: 196 SGLAPAQGMDCSKRAAEQV 214
           +      G+  SK  A+  
Sbjct: 301 NEKIY-YGVGGSKVKAQMN 318



 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 6/55 (10%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           K +L E+         ++ +  + GP H P F +  +++G     G   SK+ A+
Sbjct: 186 KNKL-EYL----KPLLKFTLIEQIGPSHAPTFKMAAKVNGKLYF-GNGGSKQKAQ 234


>gi|157131542|ref|XP_001655871.1| tRNA-dihydrouridine synthase [Aedes aegypti]
 gi|108871488|gb|EAT35713.1| tRNA-dihydrouridine synthase [Aedes aegypti]
          Length = 461

 Score = 52.8 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 6/70 (8%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVA 215
            K++L  +        P+Y+V        D  F  +V++     +    + SK+ AEQ A
Sbjct: 383 PKSKLYIYTVRNNLKLPKYEVI-----HKDKLFRAIVQVGDEKYSSSFWEKSKKYAEQSA 437

Query: 216 AAEVLKREGI 225
           A   L   GI
Sbjct: 438 ALTSLLHLGI 447


>gi|148679393|gb|EDL11340.1| mCG20459, isoform CRA_a [Mus musculus]
          Length = 380

 Score = 52.8 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVA 215
            K  L EW   +    P Y+   R+    D  F  VV ++     +   D SK+ AEQ A
Sbjct: 257 PKMCLLEWCRREKLPQPVYETVQRTI---DRMFCSVVTVAEQKYQSTLWDKSKKLAEQTA 313

Query: 216 AAEVLKREGI 225
           A   L+ +G+
Sbjct: 314 AIVCLRSQGL 323


>gi|6467479|gb|AAF13156.1| double stranded RNA activated protein kinase [Homo sapiens]
          Length = 551

 Score = 52.8 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 22/44 (50%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
            K GV  +Y+    SGP HD RFT  V I G    +G   SK+ 
Sbjct: 19  QKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKE 62



 Score = 43.9 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 161 LQEWAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           L      K  +T  Y+   +   GP+    F    ++     + G   +K+ A+Q+AA  
Sbjct: 104 LINRIAQKKRLTVNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKL 160

Query: 219 V 219
            
Sbjct: 161 A 161


>gi|115758842|ref|XP_001203807.1| PREDICTED: similar to DiGeorge syndrome critical region gene 8,
           partial [Strongylocentrotus purpuratus]
 gi|115943248|ref|XP_001198796.1| PREDICTED: similar to DiGeorge syndrome critical region gene 8,
           partial [Strongylocentrotus purpuratus]
          Length = 417

 Score = 52.8 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 158 KTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           KT    L E+A       P+Y V   S     P F  +VEI G+   +G   SKR A+  
Sbjct: 172 KTPVCILHEYAQRVMRTQPQY-VFGESRNASAP-FEALVEIKGMKYGRGEATSKRLAKAE 229

Query: 215 AAAEVL 220
           AA + L
Sbjct: 230 AAKKTL 235


>gi|332002938|gb|AED90321.1| RNA polymerase II C-terminal domain phosphatase-like 2 [Arabidopsis
           thaliana]
          Length = 774

 Score = 52.8 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 7/65 (10%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           + LQE    + G   E++    +    +    F+V V  +G     GM  +K+ A Q AA
Sbjct: 659 SALQEIG-RRCGSKVEFRTVIST----NKELQFSVEVLFTGEKIGIGMAKTKKDAHQQAA 713

Query: 217 AEVLK 221
              L+
Sbjct: 714 ENALR 718


>gi|79503115|ref|NP_195747.2| CPL2; double-stranded RNA binding / phosphatase [Arabidopsis
           thaliana]
 gi|49175307|gb|AAT52023.1| C-terminal domain phosphatase-like 2 [Arabidopsis thaliana]
 gi|332002937|gb|AED90320.1| RNA polymerase II C-terminal domain phosphatase-like 2 [Arabidopsis
           thaliana]
          Length = 770

 Score = 52.8 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 7/65 (10%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           + LQE    + G   E++    +    +    F+V V  +G     GM  +K+ A Q AA
Sbjct: 659 SALQEIG-RRCGSKVEFRTVIST----NKELQFSVEVLFTGEKIGIGMAKTKKDAHQQAA 713

Query: 217 AEVLK 221
              L+
Sbjct: 714 ENALR 718


>gi|238055325|sp|Q5YDB5|CPL2_ARATH RecName: Full=RNA polymerase II C-terminal domain phosphatase-like
           2; Short=FCP-like 2; AltName: Full=Carboxyl-terminal
           phosphatase-like 2; Short=AtCPL2; Short=CTD
           phosphatase-like 2
 gi|6759450|emb|CAB69855.1| hypothetical protein [Arabidopsis thaliana]
          Length = 771

 Score = 52.8 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 7/65 (10%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           + LQE    + G   E++    +    +    F+V V  +G     GM  +K+ A Q AA
Sbjct: 660 SALQEIG-RRCGSKVEFRTVIST----NKELQFSVEVLFTGEKIGIGMAKTKKDAHQQAA 714

Query: 217 AEVLK 221
              L+
Sbjct: 715 ENALR 719


>gi|115704787|ref|XP_795846.2| PREDICTED: similar to DiGeorge syndrome critical region gene 8
           [Strongylocentrotus purpuratus]
 gi|115951896|ref|XP_001182584.1| PREDICTED: similar to DiGeorge syndrome critical region gene 8
           [Strongylocentrotus purpuratus]
          Length = 416

 Score = 52.8 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 158 KTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           KT    L E+A       P+Y V   S     P F  +VEI G+   +G   SKR A+  
Sbjct: 171 KTPVCILHEYAQRVMRTQPQY-VFGESRNASAP-FEALVEIKGMKYGRGEATSKRLAKAE 228

Query: 215 AAAEVL 220
           AA + L
Sbjct: 229 AAKKTL 234


>gi|91084275|ref|XP_971282.1| PREDICTED: similar to double-stranded binding protein, putative
           [Tribolium castaneum]
 gi|270008749|gb|EFA05197.1| hypothetical protein TcasGA2_TC015332 [Tribolium castaneum]
          Length = 563

 Score = 52.8 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 5/69 (7%)

Query: 156 DAKT---ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+    L E+        P YK T     +    +   V I+ +    G   SK+ A+
Sbjct: 287 NGKSYVCILHEYVQHALKKQPTYKFTELE--NAATPYAATVSINDMQYGVGYGTSKKQAK 344

Query: 213 QVAAAEVLK 221
             AA   L+
Sbjct: 345 SEAARATLE 353


>gi|307202941|gb|EFN82161.1| Protein DGCR8 [Harpegnathos saltator]
          Length = 659

 Score = 52.8 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+        P YK  F+   +    ++ VV I+ +    G   SK+ A+  AA + L
Sbjct: 384 LHEYVQHALKKQPTYK--FKELENAATPYSAVVCINDMEYGSGFGSSKKQAKANAARKTL 441

Query: 221 K 221
           +
Sbjct: 442 E 442


>gi|170094987|ref|XP_001878714.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164646018|gb|EDR10264.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 281

 Score = 52.8 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 39/123 (31%), Gaps = 14/123 (11%)

Query: 26  ALTHSSISHSYQESYER---LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           AL H           +R   LE LGD ++ L I+ LL N          S     LVS +
Sbjct: 24  ALHHLDW-DLISADMQRRNCLETLGDAVMSLSITNLLQNLLPDRSLQVYSAIRPPLVSNQ 82

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
           T             I  ++ +             +  E  + A     G + A  ++ + 
Sbjct: 83  TF----------QHILANAGISHGHPQTKCKEAGNAFEIYVGAFSETEGFDAANGWIAEL 132

Query: 143 WKQ 145
           +  
Sbjct: 133 FAP 135


>gi|326495340|dbj|BAJ85766.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326503490|dbj|BAJ86251.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326520661|dbj|BAJ92694.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 527

 Score = 52.8 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 44/128 (34%), Gaps = 6/128 (4%)

Query: 22  LLEKALTH------SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
           LL     H       + +   +  + RL FLG  +L L         +     G +  R 
Sbjct: 158 LLYLVFQHLDPSSERTRTRHVRNGHSRLWFLGQFVLELAFCEFFLQRYPRESPGPMRERV 217

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
            +L+  +   +  +   L + +    DL K +          V  +L  A+YL  G+   
Sbjct: 218 FALIGKKMLPKWIKAASLHNLVFPYDDLDKMLRKDREPPTKAVFWALFGAIYLCFGMPEV 277

Query: 136 GTFVDKYW 143
              + + +
Sbjct: 278 YRVLFEAF 285



 Score = 52.8 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 48/145 (33%), Gaps = 10/145 (6%)

Query: 18  ANRSL---LEKALTHSS-ISHSYQE-SYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            N  L   L+    H S     +    +ERLE++G +I  L+++  L      A    LS
Sbjct: 384 RNIELGLGLQLCFMHPSKYKFEHPRFCFERLEYVGQKIQDLVLAERLLMKHLDAPGRWLS 443

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSS----DLRKDVCSFMTSIQADVVESLIAALYL 128
            +   L+  + C +  R   L  +I            +      S    V +++    Y 
Sbjct: 444 EKHRRLLMNKYCGRYLRGKHLHHYIIYGETVQDRFEHNRRLRNPST-TAVQQAIHGLSYC 502

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKF 153
             G       + + +    ++    
Sbjct: 503 VYGKPDVRRLMFEVFDFEQVQPKAV 527


>gi|291240590|ref|XP_002740205.1| PREDICTED: RIKEN cDNA 1810030O07-like [Saccoglossus kowalevskii]
          Length = 838

 Score = 52.8 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 8/70 (11%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV---EISGLAPAQGMD---CSKR 209
           + K  LQE        TP+Y+ T     D+  +FT V+    +              +K+
Sbjct: 535 NYKNILQEHCQKNRFDTPKYESTKIQ--DNPAQFTTVLTYKTLGNTVKYSSEGLTHSNKK 592

Query: 210 AAEQVAAAEV 219
            +EQ AA   
Sbjct: 593 ESEQSAAKVA 602



 Score = 52.4 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 20/88 (22%)

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203
           +  +L   ++  + K  LQE        +P+Y+ T        P+F   +        + 
Sbjct: 396 EPVSLSVEEYFVNYKNVLQEHCQKTGLHSPDYETTKIKEDP--PQFIAWLTY------KA 447

Query: 204 MDCSK------------RAAEQVAAAEV 219
           +  SK            + AEQ AA   
Sbjct: 448 IGKSKKYLSESLIHTSAKKAEQSAAKVA 475



 Score = 36.6 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 8/75 (10%)

Query: 156 DAKTELQEWAHAKFGVT-PEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC--SKRAAE 212
           + K +LQE+         P Y+ T       D +F    ++      Q      SKR AE
Sbjct: 683 NYKGKLQEFLTKAGVTNRPVYETTQV-----DMKFISTFKLDTKYAIQTTTPFESKRKAE 737

Query: 213 QVAAAEVLKREGIWT 227
           +  A ++L+   I T
Sbjct: 738 EHLAKQILQSLKIET 752


>gi|94985992|ref|YP_605356.1| double-stranded RNA binding [Deinococcus geothermalis DSM 11300]
 gi|94556273|gb|ABF46187.1| double-stranded RNA binding protein [Deinococcus geothermalis DSM
           11300]
          Length = 176

 Score = 52.8 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
            + K +L     A     P +  T   GP H+  F V+V  SG    QG   SKR 
Sbjct: 46  MNPKGDLIARLMALGLGAPTFDATAE-GPPHERVFHVMVSASGRVLGQGEGRSKRD 100


>gi|170037802|ref|XP_001846744.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167881148|gb|EDS44531.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 351

 Score = 52.8 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 24/55 (43%)

Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
           +++      ++  + L+E++  +    P Y+     GP HD  F   V + G+  
Sbjct: 264 KSINLVTEGKNPISILEEYSTKRKLQPPRYETVVDEGPVHDKTFVFKVIVDGVDY 318


>gi|149457864|ref|XP_001511059.1| PREDICTED: similar to Mitochondrial ribosomal protein L44, partial
           [Ornithorhynchus anatinus]
          Length = 275

 Score = 52.8 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 79/241 (32%), Gaps = 29/241 (12%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-----------------ESYERLEFLG 47
                 +R+   F+   LL+ A  +     S +                 +  + L   G
Sbjct: 11  EIQAFSRRLHENFS-LELLKTAFVNRCYIQSEEARRQELGVEEQAAALKLKDNQELSEQG 69

Query: 48  DRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107
                  ++ L  + F +     ++     L   E    VAR L +   + +S+D     
Sbjct: 70  AAFSHTYLTQLFEDTFPNMPPEGVAALVGFLTGPEVVCHVARNLAVEE-LTLSADFPVP- 127

Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR----DAKTELQE 163
                ++      +++ AL    G +    F+  +   +      F      +    L++
Sbjct: 128 ----QTVLRQTFFAVLGALLKSDGPQRTAVFIRDFLIPQMTGKELFEMWKVVNPMGLLED 183

Query: 164 WAHAKFGVTPEYKVTFRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
               +    PE ++T +SG     P + V +       A+G   +   AE+ AA   L++
Sbjct: 184 EMTKRNVPIPEPRLTRQSGSSTVLPVYFVGLYCDQKLIAEGPGETVLVAEEEAARVALRK 243

Query: 223 E 223
            
Sbjct: 244 L 244


>gi|19881492|ref|NP_612309.1| putative ribonuclease [Infectious spleen and kidney necrosis virus]
 gi|19773697|gb|AAL98811.1|AF371960_87 putative ribonuclease [infectious spleen and kidney necrosis virus]
          Length = 256

 Score = 52.8 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 77/233 (33%), Gaps = 43/233 (18%)

Query: 18  ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEG-------E 70
            N  +     TH S +H    +YE  E LGD I+  ++       F              
Sbjct: 28  KNTQVFHSVFTH-SKAHPVN-NYEWYEKLGDAIIASVMPQYYMERFPKLAHDPSATVART 85

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSS-DLRKDVCSFMTSIQADVVESLIAALYLD 129
           +S    +  S  T S +A+ +    ++      +          +  D  E+++ A+ + 
Sbjct: 86  VSQLAITYQSGTTMSNIAQRMGFLKWVVAHRDGVAPASYKEQQRLLEDTFEAMVGAISIT 145

Query: 130 ---------GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT----PEY- 175
                     G      F+   +    ++      D K+ L+E       V      EY 
Sbjct: 146 MDNATGVKCSGHIACYRFLKYAYGLINMRLDGLI-DNKSMLKELIDMHSSVLDSFTFEYT 204

Query: 176 ----KVTFRSGPDHDPRFTV-VVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                +T   G     ++TV    ++ L        SKR  E+V A +VL + 
Sbjct: 205 NNVMTLTVAHG-----KYTVSEANVNNL--------SKRELEKVLAGKVLAQL 244


>gi|156364733|ref|XP_001626500.1| predicted protein [Nematostella vectensis]
 gi|156213378|gb|EDO34400.1| predicted protein [Nematostella vectensis]
          Length = 237

 Score = 52.8 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 37/92 (40%), Gaps = 2/92 (2%)

Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
             + + + +   +  L      ++  + L E   A+ G+   ++    S    D  FT  
Sbjct: 33  NTSTSVMKQRVLKAVLVQVLMTKNPISALMEAC-AQAGLKVTFQEYDESLRGFDKIFTCD 91

Query: 193 VEISG-LAPAQGMDCSKRAAEQVAAAEVLKRE 223
           V + G L+  +    +K+ A+  AA + ++  
Sbjct: 92  VTVDGVLSSCRAYGPTKKEAKGNAARKAIEEL 123



 Score = 40.8 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 1/38 (2%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
           +    LQE+  A    TP+Y      G DH   F V  
Sbjct: 164 NYIGTLQEYTAAHRWPTPKYS-EDMRGQDHCKEFIVKC 200


>gi|208690903|gb|ACI31227.1| eukaryotic translation initiation factor 2-alpha kinase 2
           [Miopithecus talapoin talapoin]
          Length = 550

 Score = 52.8 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 6/59 (10%)

Query: 164 WAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            A  K   T  Y+       GP+    F    +I     + G   +K+ A+Q+AA   L
Sbjct: 108 IAQKKRL-TVNYEQCTLGVHGPEG---FHYKCKIGDKEYSIGTGSTKQEAKQLAAKLAL 162



 Score = 37.0 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           EL ++   + G+T  Y+    +GP HD RFT  V        +    S
Sbjct: 13  ELNKYRQKQ-GITFSYQELPNTGPPHDRRFTFRVVTDRREFPEAEGRS 59


>gi|326506566|dbj|BAJ91324.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 493

 Score = 52.4 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 44/128 (34%), Gaps = 6/128 (4%)

Query: 22  LLEKALTH------SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
           LL     H       + +   +  + RL FLG  +L L         +     G +  R 
Sbjct: 158 LLYLVFQHLDPSSERTRTRHVRNGHSRLWFLGQFVLELAFCEFFLQRYPRESPGPMRERV 217

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
            +L+  +   +  +   L + +    DL K +          V  +L  A+YL  G+   
Sbjct: 218 FALIGKKMLPKWIKAASLHNLVFPYDDLDKMLRKDREPPTKAVFWALFGAIYLCFGMPEV 277

Query: 136 GTFVDKYW 143
              + + +
Sbjct: 278 YRVLFEAF 285



 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 5/89 (5%)

Query: 18  ANRSL---LEKALTHSS-ISHSYQE-SYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            N  L   L+    H S     +    +ERLE++G +I  L+++  L      A    LS
Sbjct: 384 RNIELGLGLQLCFMHPSKYKFEHPRFCFERLEYVGQKIQDLVLAERLLMKHLDAPGRWLS 443

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSS 101
            +   L+  + C +  R   L  +I    
Sbjct: 444 EKHRRLLMNKYCGRYLRGKHLHHYIIYGE 472


>gi|302423216|ref|XP_003009438.1| 54S ribosomal protein L3 [Verticillium albo-atrum VaMs.102]
 gi|261352584|gb|EEY15012.1| 54S ribosomal protein L3 [Verticillium albo-atrum VaMs.102]
          Length = 413

 Score = 52.4 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 42/116 (36%), Gaps = 7/116 (6%)

Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK---TELQEWAHA 167
             +  A  V +L+ ALY+ GG E   +FVD +   R +         K    EL      
Sbjct: 264 RQNANAAFVRALVGALYVHGGRESVRSFVDAHILARRVDLESLF-SFKLPTRELAMLCAR 322

Query: 168 KFGVTPEYKVTFRSGPDHD--PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +    P  ++   +G  H   P F V +        +G   S   A   A+   LK
Sbjct: 323 EGFEAPVARLLSETGR-HSRTPVFVVGIYSGQDKLGEGTGASLDFARLKASMNALK 377


>gi|328787042|ref|XP_393745.3| PREDICTED: tRNA-dihydrouridine synthase 2-like [Apis mellifera]
          Length = 460

 Score = 52.4 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 58/165 (35%), Gaps = 13/165 (7%)

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS----IQADVVES 121
            +E + S      +S++T  Q+    DL+ +  +     ++      S    ++ D  ++
Sbjct: 290 LREQQESTLGKKFLSSQTLEQICNLWDLSDYFYLKKKEFEEKGLLGRSQVSPMKEDEKQT 349

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
            +         E        + +   +   +     KT L +W   +    P Y  T + 
Sbjct: 350 QLCNKRKILEEEDVILMHCAFLRNNYITDLEL---PKTVLHKWTQTQRKKMPNYN-TQQK 405

Query: 182 GPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVAAAEVLKREGI 225
           G      F  +V + G        + +K+ AEQ AA   L   G+
Sbjct: 406 G----KLFRSIVTVDGRKYGSSFWEKNKKWAEQGAALVCLFSLGL 446


>gi|224161117|ref|XP_002338294.1| predicted protein [Populus trichocarpa]
 gi|222871751|gb|EEF08882.1| predicted protein [Populus trichocarpa]
          Length = 196

 Score = 52.4 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQVA 215
            K+ LQ     +    P Y+VT + G DH P F+  V ++     +     S + A+  A
Sbjct: 2   YKSNLQAVCQQRGWELPTYQVTKQ-GQDHSPLFSATVTVNATSFSSPSPSSSSKKAQSEA 60

Query: 216 AAEV 219
           A   
Sbjct: 61  AKLA 64


>gi|198423460|ref|XP_002126266.1| PREDICTED: similar to SON DNA-binding protein [Ciona intestinalis]
          Length = 140

 Score = 52.4 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQ 213
           +   + L E    +    P +++   SGPDH   F   V I+G          +K+ A+ 
Sbjct: 64  KHPVSALMEICSKRKWSQPNFQLVHNSGPDHQRFFMFKVTINGQEYQPSTPSVNKKLAKA 123

Query: 214 VAAAEVLKREGI 225
            +A+  L+  G+
Sbjct: 124 NSASVALQGMGL 135


>gi|327283189|ref|XP_003226324.1| PREDICTED: microprocessor complex subunit DGCR8-like isoform 1
           [Anolis carolinensis]
          Length = 773

 Score = 52.4 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 156 DAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+E   L E+      V P Y       P  +P F   V I G+    G   SK+ A+
Sbjct: 508 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EP-FGASVIIDGVTYGAGTASSKKLAK 565

Query: 213 QVAAAEVLK 221
             AA   L+
Sbjct: 566 NKAARATLE 574


>gi|260834651|ref|XP_002612323.1| hypothetical protein BRAFLDRAFT_265495 [Branchiostoma floridae]
 gi|229297700|gb|EEN68332.1| hypothetical protein BRAFLDRAFT_265495 [Branchiostoma floridae]
          Length = 444

 Score = 52.4 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVA 215
            KT L  W+  ++   P Y+   +     D +F  VV +     A      +K+ AEQ A
Sbjct: 373 PKTILLNWSRTEYLPQPTYETVKQ---GSDTKFNSVVTVGDKRYASSFWHKAKKLAEQAA 429

Query: 216 AAEVLKREGI 225
           A+  L+  G+
Sbjct: 430 ASVCLRTLGL 439


>gi|296044644|gb|ADG85736.1| type 2 double stranded RNA activated protein kinase [Gadus morhua]
          Length = 624

 Score = 52.4 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           RFT  V ++G    +G+  +K+ A Q AA   L+
Sbjct: 5   RFTQRVILNGKPYPEGVGKNKKEARQNAAKHALE 38



 Score = 36.6 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 7/28 (25%), Positives = 14/28 (50%)

Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           + G     G   +K+ A++ AA  V ++
Sbjct: 108 LDGTEYPSGSGRTKKEAKEDAARLVYEK 135


>gi|195373462|ref|XP_002046012.1| GM19663 [Drosophila sechellia]
 gi|194122928|gb|EDW44971.1| GM19663 [Drosophila sechellia]
          Length = 267

 Score = 52.4 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           E+        P Y+  F+   +    ++  V ++ L    G   SK+ A+  AA E L+
Sbjct: 1   EYVQHALKTQPTYE--FKELQNAATPYSATVSVNNLKYGTGYGTSKKQAKSEAARETLE 57


>gi|240978634|ref|XP_002403002.1| 39S ribosomal protein L44, putative [Ixodes scapularis]
 gi|215491266|gb|EEC00907.1| 39S ribosomal protein L44, putative [Ixodes scapularis]
          Length = 337

 Score = 52.4 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/242 (16%), Positives = 77/242 (31%), Gaps = 38/242 (15%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEF---LGD---------------- 48
              KR+G  +++ +L   A    S      E   R E    LGD                
Sbjct: 73  AFAKRLGETWSDETL-RTAFVQQSFVEREAEH--RRELGMPLGDDGTLSLTPNTDLARAG 129

Query: 49  -RILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVS--SDLRK 105
            ++        L   F       ++     L+S +  S V++ +  +  I  +     + 
Sbjct: 130 RQLCDSYADEYLVREFPQLPREGVNAVKEHLMSDQVLSHVSKNIGTSDLILCADFPPEQT 189

Query: 106 DVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR---D-AKTEL 161
                     A+V+ +L+  L  D G + A  FV  +   + +          D     L
Sbjct: 190 T--------LANVLMALVGGLARDCGKDRACLFVRDFVLAQLVGKDVNELWVVDKPIERL 241

Query: 162 QEWAHAKFGVTPEYKVTFRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                 +     E ++ + SG    +  + V            +  +   A+++AA + L
Sbjct: 242 ASLLQGQGMSPAEPRLLWDSGRTTLEASYCVGFYSDKKLLGSSVGETVEIAQEMAARDAL 301

Query: 221 KR 222
           +R
Sbjct: 302 RR 303


>gi|322782637|gb|EFZ10516.1| hypothetical protein SINV_13804 [Solenopsis invicta]
          Length = 401

 Score = 52.4 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 52/159 (32%), Gaps = 23/159 (14%)

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAG 136
             + A+T  Q+     L  + R  S   ++             +  I    LD  I+ + 
Sbjct: 243 KFLDAQTLEQICEVWGLDDYCRAKSKEFQNKG------LLGRFQ--ITPEILDKDIDNSI 294

Query: 137 TFVDKYWKQRA-LKSGKFRRD--------AKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           +   K  ++   L    F R+         KT L +W        P Y          + 
Sbjct: 295 SHKRKIQEEDVSLMRCAFLRNSYVTDSDLPKTRLLKWTKENRKKMPIYNTRQE-----NK 349

Query: 188 RFTVVVEISGLAPAQG-MDCSKRAAEQVAAAEVLKREGI 225
            F  VV + G        + +K+ AEQ AA   L   GI
Sbjct: 350 LFCSVVTVDGRKYGSSFWEKNKKWAEQGAALVCLYFLGI 388


>gi|37231562|gb|AAH58431.1| Dus2l protein [Mus musculus]
          Length = 289

 Score = 52.4 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVA 215
            K  L EW   +    P Y+   R+    D  F  VV ++     +   D SK+ AEQ A
Sbjct: 166 PKMCLLEWCRREKLPQPVYETVQRTI---DRMFCSVVTVAEQKYQSTLWDKSKKLAEQTA 222

Query: 216 AAEVLKREGI 225
           A   L+ +G+
Sbjct: 223 AIVCLRSQGL 232


>gi|189210018|ref|XP_001941341.1| RNase III domain containing protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187977434|gb|EDU44060.1| RNase III domain containing protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 269

 Score = 52.4 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 50/145 (34%), Gaps = 28/145 (19%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN---------------------HF 63
            A+TH S  H  Q   +RL +LG RI+ L  S  L +                       
Sbjct: 111 LAVTHKSFQHGKQGFNDRLAYLGRRIVELQTSQALMSAPQEYQWPRDEMGKPKPDEFGRK 170

Query: 64  DSAKE-----GELSVRFNSLV-SAETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQA 116
                       LS    SLV S    + +A    L    R       D   S + ++  
Sbjct: 171 PYLHPALNGLQGLSDEAESLVLSKSRLAPIAERYGLDKVTRWKPKRADDLKGSGIETVLM 230

Query: 117 DVVESLIAALYLDGGIEVAGTFVDK 141
             + +++ A+ L+ G EVA   V +
Sbjct: 231 TTLYAIVGAVALERGGEVANKLVQE 255


>gi|195356071|ref|XP_002044505.1| GM13239 [Drosophila sechellia]
 gi|194131807|gb|EDW53741.1| GM13239 [Drosophila sechellia]
          Length = 101

 Score = 52.4 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E         P Y+     G  H+  FT+   +       G   +K+ A+++AA  +  R
Sbjct: 39  EMCVQLRWPPPLYETEAEVGLPHERVFTIACSVLEHRV-MGKGTTKKIAKRLAAHSMFVR 97

Query: 223 E 223
            
Sbjct: 98  L 98


>gi|212545454|ref|XP_002152881.1| conserved hypothetical protein [Penicillium marneffei ATCC 18224]
 gi|210065850|gb|EEA19944.1| conserved hypothetical protein [Penicillium marneffei ATCC 18224]
          Length = 155

 Score = 52.4 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 53/150 (35%), Gaps = 17/150 (11%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ------ESYERLEFLGDRILGLL 54
           M A + +  ++ I Y+  +  L+ +AL  S     +Q          RL   GD      
Sbjct: 1   MEA-KVAACQRIIQYSVTDMRLILEALNMSGQGLFFQGQWMKLPKNTRLAVYGDS----A 55

Query: 55  ISTLLFNHFDSAK--EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
            +  +   +      + + +     ++      +    + L   + ++            
Sbjct: 56  AAHYMCRRWVEMPLTKEQWTGIRKHVLGNSILGRTGIRMGLNYCLNLNPG----TTEVSH 111

Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKY 142
            + A  VE+++ A++LDGG +   + +   
Sbjct: 112 DMMATSVEAILGAVHLDGGDQALASVMTAL 141


>gi|157107592|ref|XP_001649849.1| hypothetical protein AaeL_AAEL004808 [Aedes aegypti]
 gi|108879546|gb|EAT43771.1| conserved hypothetical protein [Aedes aegypti]
          Length = 919

 Score = 52.4 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 22/53 (41%)

Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
           +K     +   + L E+   +  + P Y +   SGP H   F   V ++GL  
Sbjct: 838 VKINTDGKHPVSILGEYCSKRKWMPPRYDLVHESGPGHAKNFVFKVIVNGLEY 890


>gi|328713081|ref|XP_003244986.1| PREDICTED: interferon-inducible double stranded RNA-dependent
           protein kinase activator A-like isoform 4 [Acyrthosiphon
           pisum]
          Length = 443

 Score = 52.4 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                EY +   +G  H+P F   V ++    A G   SK+ A++ AA  +L + 
Sbjct: 144 KKQVVEYGLISITGHVHNPVFRF-VAVNDGIYAYGDGLSKKEAKKNAAIALLDKL 197



 Score = 48.9 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 2/78 (2%)

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV-TFRSGPDHDPRFTVVVEISGLAPA 201
           + +  +     + +    LQE   A+    P+Y          H+  ++VV  +  L  +
Sbjct: 223 YSKENVLDEISKVNPIGVLQELCMARRWELPDYDFPQDERNEAHNVWYSVVCSLRDLK-S 281

Query: 202 QGMDCSKRAAEQVAAAEV 219
            G   +K+AA++ AA  +
Sbjct: 282 VGEGKTKQAAKRQAAHIM 299


>gi|328713075|ref|XP_001942593.2| PREDICTED: interferon-inducible double stranded RNA-dependent
           protein kinase activator A-like isoform 1 [Acyrthosiphon
           pisum]
 gi|328713077|ref|XP_003244984.1| PREDICTED: interferon-inducible double stranded RNA-dependent
           protein kinase activator A-like isoform 2 [Acyrthosiphon
           pisum]
 gi|328713079|ref|XP_003244985.1| PREDICTED: interferon-inducible double stranded RNA-dependent
           protein kinase activator A-like isoform 3 [Acyrthosiphon
           pisum]
          Length = 427

 Score = 52.4 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                EY +   +G  H+P F   V ++    A G   SK+ A++ AA  +L + 
Sbjct: 128 KKQVVEYGLISITGHVHNPVFRF-VAVNDGIYAYGDGLSKKEAKKNAAIALLDKL 181



 Score = 48.9 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 2/78 (2%)

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV-TFRSGPDHDPRFTVVVEISGLAPA 201
           + +  +     + +    LQE   A+    P+Y          H+  ++VV  +  L  +
Sbjct: 207 YSKENVLDEISKVNPIGVLQELCMARRWELPDYDFPQDERNEAHNVWYSVVCSLRDLK-S 265

Query: 202 QGMDCSKRAAEQVAAAEV 219
            G   +K+AA++ AA  +
Sbjct: 266 VGEGKTKQAAKRQAAHIM 283


>gi|332022994|gb|EGI63259.1| tRNA-dihydrouridine synthase 2-like protein [Acromyrmex echinatior]
          Length = 461

 Score = 52.4 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 25/70 (35%), Gaps = 6/70 (8%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVA 215
            KT L +W        P Y     S       F  VV + G        + +K+ AEQ A
Sbjct: 384 PKTRLLKWTKENRKKMPVYNTRQES-----KLFCSVVTVDGRKYGSSFWEKNKKWAEQGA 438

Query: 216 AAEVLKREGI 225
           A   L   GI
Sbjct: 439 ALVCLYFLGI 448


>gi|260817370|ref|XP_002603560.1| hypothetical protein BRAFLDRAFT_79093 [Branchiostoma floridae]
 gi|229288879|gb|EEN59571.1| hypothetical protein BRAFLDRAFT_79093 [Branchiostoma floridae]
          Length = 1211

 Score = 52.4 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 6/80 (7%)

Query: 149 KSGKFRRD---AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205
           +     +D    K  LQ+    +   +P YK     G ++    TV  +  G    +   
Sbjct: 799 REATVSKDSVPYKDILQKHVQDQKLPSPRYK--DVKGEENTLS-TVSFKTRGAYQTKEPA 855

Query: 206 CSKRAAEQVAAAEVLKREGI 225
            SK+ AEQ AA  VL+   +
Sbjct: 856 KSKKEAEQNAAKAVLEMLKV 875



 Score = 49.7 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 12/72 (16%)

Query: 155  RDAKTELQEWAHAKF--GVTPEYK--VTFRSGPDHDPRFTVVVEIS--GLAPAQGMDCSK 208
            R+ K  LQ+    +      P+Y   +T          F   V     G      +  SK
Sbjct: 1060 RNYKAILQQHVQKQRLQLPPPKYNDSITEE------KTFLSTVRFETAGAFLTTEVAPSK 1113

Query: 209  RAAEQVAAAEVL 220
            + +EQ AA  V+
Sbjct: 1114 KDSEQNAAKSVI 1125



 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 15/80 (18%)

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL------APAQGMD 205
           +   D KT L+     +    P YK    + P+ D  F   V            PA+G  
Sbjct: 556 EDNTDYKTVLKGHVKKQKLPAPFYK----TQPEGD-VFKSTVTFQTRGAYQTTEPAKG-- 608

Query: 206 CSKRAAEQVAAAEVLKREGI 225
             K+ AEQ AA EV++  GI
Sbjct: 609 --KKEAEQNAAKEVVRMLGI 626



 Score = 44.3 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 8/76 (10%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QG 203
           ++      +    + ELQE+   K G  P+ +V           F+  V ++G A   QG
Sbjct: 440 KKVAIQKAYPTHFRAELQEYL-KKQGQDPDIEVIQDE-----QGFSAQVRMTGRAEFPQG 493

Query: 204 -MDCSKRAAEQVAAAE 218
               +K+ AEQ AA +
Sbjct: 494 DTSSTKKEAEQSAAEK 509



 Score = 40.8 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 12/79 (15%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSG-PDHDPRFTVVVEIS-GLAPAQGMDC--SKRAAEQ 213
           K  LQE+   +    P+Y      G     P FT  V +    A  +      SK+ A Q
Sbjct: 386 KNNLQEYLDKEKLPKPKYVRIEGEGANAGQPPFTYRVVLQYKNALCRPEGGFASKKVAIQ 445

Query: 214 VA------A--AEVLKREG 224
            A      A   E LK++G
Sbjct: 446 KAYPTHFRAELQEYLKKQG 464



 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 19/105 (18%)

Query: 129  DGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHA-KFGVTPEYKVTFRSGPDHDP 187
            D     A + +D   + R+       R+ K  LQ++A        P+Y+     G     
Sbjct: 1115 DSEQNAAKSVID-LLEHRSDN----ERNYKGVLQQYAIKLDSADVPKYQTYSSEGG---- 1165

Query: 188  RFTVVVEISG-------LAPAQGMDCSKRAAEQVAAAEVLKREGI 225
             F  VV              ++    SK+ A+Q AA   ++   I
Sbjct: 1166 -FKTVVSCRAITKTASFEVTSEAC-NSKKEAQQRAARRAVELLDI 1208


>gi|312871873|ref|ZP_07731957.1| hypothetical protein HMPREF9219_0396 [Lactobacillus iners LEAF
           3008A-a]
 gi|311092595|gb|EFQ50955.1| hypothetical protein HMPREF9219_0396 [Lactobacillus iners LEAF
           3008A-a]
          Length = 35

 Score = 52.4 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/34 (50%), Positives = 24/34 (70%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           FTV + ++G   +QG+  SK+AAEQVAA+  LK 
Sbjct: 1   FTVQLIVAGENISQGIGRSKKAAEQVAASVALKN 34


>gi|322705596|gb|EFY97181.1| hypothetical protein MAA_07477 [Metarhizium anisopliae ARSEF 23]
          Length = 200

 Score = 52.4 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 58/132 (43%), Gaps = 20/132 (15%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHS-----YQESYERLEFLGDRILGLLISTLLFN 61
           + +E  + Y F + +LLE+AL  +           ++  + L  +GD +L L++     +
Sbjct: 4   NQIEHALQYKFKDPALLEEALVAAGAGPKKAKTAREKGNKVLALIGDALLRLVLVD--DS 61

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
                  G+ S R            + +E +LA FI+      K+  +   +  A  +E+
Sbjct: 62  VVAGQAPGKGSRRK----------VLQQEWELARFIKT---PFKNKGNVPRTTGAATMEA 108

Query: 122 LIAALYLDGGIE 133
           L+ A++LD G +
Sbjct: 109 LVGAVWLDSGRD 120


>gi|145550957|ref|XP_001461156.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|74830689|emb|CAI39096.1| Dicer-like ribonuclease with mutated helicase and Rnase III domains
            [Paramecium tetraurelia]
 gi|124428989|emb|CAK93783.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1566

 Score = 52.4 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 78/258 (30%), Gaps = 84/258 (32%)

Query: 6    YSTLEKRIGYAFANRSLLEKALTHSSI----SHSYQESY-ERL----EF----------- 45
            Y   E+ I Y F +  LL +ALT  S     ++  Q+ Y E+     EF           
Sbjct: 1265 YQKFEEIIKYQFNSFELLFQALTDVSFKMIINNEVQQQYMEKFQSKDEFQGWISESELQE 1324

Query: 46   -----------------------LGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
                                   LG  +    +  +L     S     L   +  L    
Sbjct: 1325 YIKQIDQMNSIAQSSYQNSDLAILGKSLWDYALMKILNEM--SLDNASLVTLYKILKGIS 1382

Query: 83   TCSQVARELDLASFIRVS-------------SDLRKDVCSFMTSI--------QADVVES 121
              +  A +L +  ++  S                 + +   ++SI          +   +
Sbjct: 1383 FLTYAAIKLKIHQYLNSSFQKQLQSFVDLYEKTKDQSITFHISSIPYNENSIMLRNAFLA 1442

Query: 122  LIAALYLDGGIEVAGTF-----------VDKYWKQRALKSGKFRRDAKTELQEWAHAKFG 170
            L+ A+Y+D   E+A              VD+ ++   L+S +  +       +W    FG
Sbjct: 1443 LVGAIYIDSDFELAVVLEWIKSLFTQINVDELYQPEFLQSRQRYQFY-----QWYQKHFG 1497

Query: 171  VTPEYKVTFRSGPDHDPR 188
                + +     P  D +
Sbjct: 1498 NPFNFDLIKI--PHQDQK 1513


>gi|325073735|gb|ADY76788.1| PP120 [Orf virus]
          Length = 183

 Score = 52.0 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + + E+         E+  T   G DH PRFT  + ISG   A     SK+ A   A
Sbjct: 109 NPVSAVNEFCMMTHRPL-EFCETRSGGEDHCPRFTCTITISGKVVAAANGASKKLARHAA 167

Query: 216 AAEVL 220
            A  L
Sbjct: 168 CASAL 172


>gi|193661999|ref|XP_001947403.1| PREDICTED: microprocessor complex subunit DGCR8-like [Acyrthosiphon
           pisum]
          Length = 650

 Score = 52.0 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 8/74 (10%)

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYK---VTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206
                +   + L E+        P Y+   +     P     ++  V ++ +    G+  
Sbjct: 375 MNPNGKSYVSILHEYLQQALKTQPWYEFKELENTETP-----YSATVVLNDVQYGVGLGN 429

Query: 207 SKRAAEQVAAAEVL 220
           SK+ A+  AA   L
Sbjct: 430 SKKQAKLNAAQATL 443


>gi|82582943|gb|ABB84397.1| interferon resistance protein [Orf virus]
          Length = 166

 Score = 52.0 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + + E+         E+  T   G DH PRFT  + ISG   A     SK+ A   A
Sbjct: 92  NPVSAVNEFCMMTHRPL-EFCETRSGGEDHCPRFTCTITISGKVVAAANGASKKLARHAA 150

Query: 216 AAEVL 220
            A  L
Sbjct: 151 CASAL 155


>gi|82582925|gb|ABB84388.1| interferon resistance protein [Orf virus]
 gi|82582927|gb|ABB84389.1| interferon resistance protein [Orf virus]
          Length = 166

 Score = 52.0 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + + E+         E+  T   G DH PRFT  + ISG   A     SK+ A   A
Sbjct: 92  NPVSAVNEFCMMTHRPL-EFCETRSGGEDHCPRFTCTITISGKVVAAANGASKKLARHAA 150

Query: 216 AAEVL 220
            A  L
Sbjct: 151 CASAL 155


>gi|82582941|gb|ABB84396.1| interferon resistance protein [Orf virus]
          Length = 166

 Score = 52.0 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + + E+         E+  T   G DH PRFT  + ISG   A     SK+ A   A
Sbjct: 92  NPVSAVNEFCMMTHRPL-EFCETRSGGEDHCPRFTCTITISGKVVAAANGASKKLARHAA 150

Query: 216 AAEVL 220
            A  L
Sbjct: 151 CASAL 155


>gi|330844167|ref|XP_003294006.1| hypothetical protein DICPUDRAFT_84511 [Dictyostelium purpureum]
 gi|325075596|gb|EGC29463.1| hypothetical protein DICPUDRAFT_84511 [Dictyostelium purpureum]
          Length = 373

 Score = 52.0 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           K +L E+ + +      YK T   G +H   F  ++ ++G   +     +K+ +E+  A 
Sbjct: 4   KVQLNEYLNKRKLPYATYK-TETRGSEHKKDFRSILTVNGRDISSSWKKTKKDSEKECAK 62

Query: 218 EVLK 221
            VL+
Sbjct: 63  NVLE 66


>gi|82582945|gb|ABB84398.1| interferon resistance protein [Orf virus]
          Length = 166

 Score = 52.0 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + + E+         E+  T   G DH PRFT  + ISG   A     SK+ A   A
Sbjct: 92  NPVSAVNEFCMMTHRPL-EFSETRAGGEDHCPRFTCTITISGKVVAVADGASKKLARHTA 150

Query: 216 AAEVL 220
            A  L
Sbjct: 151 CASAL 155


>gi|301620037|ref|XP_002939389.1| PREDICTED: hypothetical protein LOC100485785 [Xenopus (Silurana)
            tropicalis]
          Length = 1537

 Score = 52.0 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 51/160 (31%), Gaps = 18/160 (11%)

Query: 44   EFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL 103
            +F G     +L +  + N    A   +      + V+    + + R++           L
Sbjct: 1347 QFTGSTGAQVLSADEISNSGPQAWLKKDQFLKAAPVTGGRGALLMRKMGWKE----GKGL 1402

Query: 104  RKDVCSFMTSIQ---ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTE 160
             +     +  I        + L+A      G + +        K          +   + 
Sbjct: 1403 GRHNEGNVDPILIDFKTDRKGLVA-----DGEKASNKLALPMMK------DLSGKHPISA 1451

Query: 161  LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
            L E  + K    PE+ +   +GP+H  RF   V ++G   
Sbjct: 1452 LMELCNKKKWSPPEFVLVDDTGPEHRKRFLFRVTVNGGVY 1491


>gi|82582935|gb|ABB84393.1| interferon resistance protein [Orf virus]
          Length = 166

 Score = 52.0 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + + E+         E+  T   G DH PRFT  + ISG         SK+ A   A
Sbjct: 92  NPVSAVNEFCMMTHRPL-EFSETRAGGEDHCPRFTCTITISGKVVTVADGASKKLARHNA 150

Query: 216 AAEVL 220
            A  L
Sbjct: 151 CASAL 155


>gi|289183784|ref|YP_003457325.1| dsRNA-binding interferon resistance protein [Pseudocowpox virus]
 gi|288804256|gb|ADC53921.1| dsRNA-binding interferon resistance protein [Pseudocowpox virus]
          Length = 180

 Score = 52.0 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + + E+         E+  T   G DH P FT  + +SG   A     SK+ A   A
Sbjct: 106 NPVSAVNEFCMITHRTL-EFCETRSGGQDHCPNFTCTIVVSGKVIATATGTSKKLARHAA 164

Query: 216 AAEVL 220
            A  L
Sbjct: 165 CATAL 169


>gi|312374197|gb|EFR21805.1| hypothetical protein AND_16335 [Anopheles darlingi]
          Length = 358

 Score = 52.0 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 156 DAKT---ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+    L E+        P Y+  F+   +    ++  V I+ L    G   SK+ A+
Sbjct: 288 NGKSYVCILHEYVQHALRKQPAYE--FKELENAATPYSATVTINELKYGTGYGTSKKQAK 345

Query: 213 QVAAAEVLK 221
             AA E L+
Sbjct: 346 SEAARETLE 354


>gi|126722609|ref|NP_001075682.1| interferon-induced, double-stranded RNA-activated protein kinase
           [Oryctolagus cuniculus]
 gi|71068410|gb|AAZ23127.1| eukaryotic translation initiation factor 2-alpha kinase 2
           [Oryctolagus cuniculus]
          Length = 547

 Score = 52.0 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 5/64 (7%)

Query: 161 LQEWAHAKFGVTPEYKVTF--RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           L      K  +T  Y+       GP    RF     I       G+  +K+ A+Q+AA  
Sbjct: 104 LINRVAQKAKLTVNYEPCELWEQGP---KRFQYKCRIGLKVYGTGIGSTKQEAKQLAAKS 160

Query: 219 VLKR 222
              +
Sbjct: 161 AYHK 164



 Score = 36.2 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205
           EL ++   K  +  +Y    +SGP HD  FT  V I+     +   
Sbjct: 13  ELNKYRQ-KHSILLKYHELPQSGPPHDVTFTFKVIINEREFPEAEG 57


>gi|212528380|ref|XP_002144347.1| RNAse III, putative [Penicillium marneffei ATCC 18224]
 gi|210073745|gb|EEA27832.1| RNAse III, putative [Penicillium marneffei ATCC 18224]
          Length = 142

 Score = 52.0 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 48/127 (37%), Gaps = 14/127 (11%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKE 68
           ++        + SLL ++   +  S   ++  + L   GD  L   +           + 
Sbjct: 15  IQGLTNRPPNDESLLWESFQAAGYSS--RDGNKNLALPGDAALKFYLI---------MEG 63

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
             ++   +S+ S +  S+   EL L  +I+                 A  +E++I A+++
Sbjct: 64  QRINDVVSSIASNDNLSRKGFELGLERYIQ---GNPAQRGKVSNGTMATTLEAIIGAMFI 120

Query: 129 DGGIEVA 135
           D G + A
Sbjct: 121 DSGFDYA 127


>gi|72255535|ref|NP_001026820.1| 39S ribosomal protein L44, mitochondrial [Rattus norvegicus]
 gi|71051110|gb|AAH98715.1| Mitochondrial ribosomal protein L44 [Rattus norvegicus]
 gi|149016242|gb|EDL75488.1| mitochondrial ribosomal protein L44 [Rattus norvegicus]
          Length = 332

 Score = 52.0 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 64/191 (33%), Gaps = 11/191 (5%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
           +  + L   G       ++  L + F +     +    N L        VA  L +   +
Sbjct: 120 KDNQELFEQGLSFSHRCLTQFLEDEFPNLPTEGIESLVNFLTGEAVVCHVASNLAVEQ-L 178

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-- 155
            +S++           +      ++I AL    G E A  F+  +   +      F    
Sbjct: 179 TLSAEFPVPQP-----VLRRTFFAVIGALLQSSGPERAALFIRDFLITQMTGKELFEMWT 233

Query: 156 --DAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAE 212
             +    L E    +    PE ++T +SG     P + V +       A+G   +   AE
Sbjct: 234 IVNPMGLLVEELKKRNISAPESRLTRQSGSTTALPLYFVGLYCDKRLIAEGPGETVLVAE 293

Query: 213 QVAAAEVLKRE 223
           + AA   L++ 
Sbjct: 294 EEAARVALRKL 304


>gi|115955350|ref|XP_001193629.1| PREDICTED: similar to Staufen, RNA binding protein, homolog 2
           (Drosophila), partial [Strongylocentrotus purpuratus]
          Length = 486

 Score = 51.6 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 3/76 (3%)

Query: 150 SGKFRRDAKT--ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           SG   R+ K+   L   A     +   +KV    G  H   F +   + G    +    S
Sbjct: 260 SGGEERNVKSDISLIYEAANLHNLNVVFKVLDERGQPHLKIFKLQCTV-GEFNTESEGPS 318

Query: 208 KRAAEQVAAAEVLKRE 223
           K+ A++ AA  +L + 
Sbjct: 319 KKDAKRKAAELMLPKL 334


>gi|115714507|ref|XP_001196524.1| PREDICTED: similar to Staufen, RNA binding protein, homolog 2
           (Drosophila), partial [Strongylocentrotus purpuratus]
          Length = 396

 Score = 51.6 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 3/76 (3%)

Query: 150 SGKFRRDAKT--ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           SG   R+ K+   L   A     +   +KV    G  H   F +   + G    +    S
Sbjct: 260 SGGEERNVKSDISLIYEAANLHNLNVVFKVLDERGQPHLKIFKLQCTV-GEFNTESEGPS 318

Query: 208 KRAAEQVAAAEVLKRE 223
           K+ A++ AA  +L + 
Sbjct: 319 KKDAKRKAAELMLPKL 334


>gi|321451683|gb|EFX63253.1| hypothetical protein DAPPUDRAFT_335709 [Daphnia pulex]
 gi|321454090|gb|EFX65276.1| hypothetical protein DAPPUDRAFT_333337 [Daphnia pulex]
          Length = 121

 Score = 51.6 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 24/42 (57%)

Query: 6  YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLG 47
             LE  I Y F N+ +L +A TH +  +    SYE+LE+LG
Sbjct: 20 LDQLEIIINYKFNNQLILLEASTHGTFHNPLCSSYEKLEYLG 61


>gi|170056263|ref|XP_001863951.1| ribonuclease iii [Culex quinquefasciatus]
 gi|167876020|gb|EDS39403.1| ribonuclease iii [Culex quinquefasciatus]
          Length = 239

 Score = 51.6 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 53/152 (34%), Gaps = 46/152 (30%)

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           L++ ++SLV+    + +  +L + S+   S           T  +AD++E+ + ALY+D 
Sbjct: 72  LTLLWSSLVNNRNQAVICDDLGMTSYAVYS----NKKADLKTKERADLLEAFLGALYVDK 127

Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           G+  A                                        K+   +GP +   +T
Sbjct: 128 GLNTA----------------------------------------KLIECNGPTNTRVYT 147

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           + V       A     S +  E  AA + L+ 
Sbjct: 148 MAVYF--RLLACCNGHSMQQVEINAAKQALEN 177


>gi|154293120|ref|XP_001547110.1| hypothetical protein BC1G_14512 [Botryotinia fuckeliana B05.10]
 gi|150845657|gb|EDN20850.1| hypothetical protein BC1G_14512 [Botryotinia fuckeliana B05.10]
          Length = 397

 Score = 51.6 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 43/114 (37%), Gaps = 3/114 (2%)

Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAK 168
           M +  A  V++LI A+YL  G   A TF++++   R L   K  +      +L      +
Sbjct: 243 MNNAYASFVKALIGAVYLHAGRAAAKTFIEQHILSRHLDLDKLFQFSQPVRDLARLCARE 302

Query: 169 FGVTPEYKVTFRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
               P  ++   +G     P F V +        +    S   A   A+   LK
Sbjct: 303 DFEAPVARILSETGRHSRSPVFVVGIYSGREKLGEAPGASLNEARIRASVAGLK 356


>gi|190346940|gb|EDK39128.2| hypothetical protein PGUG_03225 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 230

 Score = 51.6 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 48/139 (34%), Gaps = 18/139 (12%)

Query: 15  YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL--- 71
           YA ++  L  + LTH S  +  +   E+L  +G ++L L  +    +   +A E  +   
Sbjct: 71  YAISD-ELALQVLTHKSFGNGIKPYNEKLSAMGSKVLNLYCAKYTTDTPTTANENAIDGK 129

Query: 72  ------SVRFNSLVSAETCSQVARELDLASFIR-----VSSDLRKDVCSFMTSIQADVVE 120
                 S     L         A+   L   +       S             + A ++ 
Sbjct: 130 NVDVLGSPMAKELAGRLALGLFAKSHKLNQVLFWKSYNHSLGFEASG---EMKVSAQMMY 186

Query: 121 SLIAALYLDGGIEVAGTFV 139
           +LI A+    G  VA  F+
Sbjct: 187 ALIGAVTFTHGKTVAEEFI 205


>gi|256074989|ref|XP_002573804.1| tar rna binding protein (trbp) [Schistosoma mansoni]
 gi|238658992|emb|CAZ30036.1| tar rna binding protein (trbp), putative [Schistosoma mansoni]
          Length = 356

 Score = 51.6 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             + LQE    K G+TP Y++    GP H+P +  +   +G   A     SK+ A+  A+
Sbjct: 10  PISILQEVC-VKKGITPIYELVSNEGPVHEPLYVFLCT-AGPFSATSKGASKKRAKHQAS 67

Query: 217 AEVLKRE 223
             +L + 
Sbjct: 68  YLILLKM 74



 Score = 40.4 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 4/59 (6%)

Query: 160 ELQEWAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            LQ+         P Y+     +S P  +  ++  V +       G   SK++A++ AA
Sbjct: 130 RLQDLCQKNTWPPPSYEFLTIPQSTPSGN-EYSCKVRLW-KWTHTGFGNSKKSAKRRAA 186


>gi|226480664|emb|CAX73429.1| Trans-activation-responsive RNA-binding protein [Schistosoma
           japonicum]
          Length = 358

 Score = 51.6 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             + LQE    K G+TP Y++    GP H+P +  +   +G   A     SK+ A+  A+
Sbjct: 10  PISILQEVC-VKKGITPLYELVSSEGPIHEPLYVFLCT-AGPFSATSKGASKKRAKHQAS 67

Query: 217 AEVLKRE 223
             +L + 
Sbjct: 68  YLILLKM 74



 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 11/97 (11%)

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK-VTFR 180
           ++ + ++D   +V    +    KQ          +    LQE         P Y+ +T +
Sbjct: 98  VLGSDFMDSLDDVELDGLPNRIKQEE------EGNFVGRLQELCQKNIWPPPSYEFLTIQ 151

Query: 181 SGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAA 216
           S P  +       ++        G   SK++A++ AA
Sbjct: 152 STPSGN---EYGCKVRLWKWTHTGFGNSKKSAKRRAA 185


>gi|33415077|gb|AAQ18046.1| double-stranded RNA-binding protein [Bovine papular stomatitis
           virus]
          Length = 182

 Score = 51.6 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + + E+         E+  T   G DH P FT  + +SG   A     SK+ A   A
Sbjct: 108 NPVSAVNEFCMITHRPL-EFCETRSGGQDHCPNFTCTIMVSGKVIATADGTSKKMARHAA 166

Query: 216 AAEVL 220
            A  L
Sbjct: 167 CATAL 171


>gi|33415075|gb|AAQ18045.1| double-stranded RNA-binding protein [Tillquist parapoxvirus]
          Length = 180

 Score = 51.6 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + + E+         E+  T   G DH P FT  + +SG   A     S++ A   A
Sbjct: 106 NPVSAVNEFCMITHRPL-EFCETRSGGQDHCPNFTCTIVVSGKLIATATGTSRKLARHAA 164

Query: 216 AAEVL 220
            A  L
Sbjct: 165 CATAL 169


>gi|292628574|ref|XP_001342694.3| PREDICTED: tRNA-dihydrouridine synthase 2-like [Danio rerio]
          Length = 504

 Score = 51.2 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVA 215
            K  L EW+  +    P Y+   RS    D  F   V ++     +   + SK+ AEQ A
Sbjct: 373 PKMFLLEWSRKEKLEQPVYETEQRSQ---DRGFQSTVIVADKKYRSTLWEKSKKFAEQAA 429

Query: 216 AAEVLKREGI 225
           A   L+  G+
Sbjct: 430 ALVCLRTLGL 439


>gi|261190696|ref|XP_002621757.1| RNAse III [Ajellomyces dermatitidis SLH14081]
 gi|239591180|gb|EEQ73761.1| RNAse III [Ajellomyces dermatitidis SLH14081]
          Length = 152

 Score = 51.2 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 9/126 (7%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           R S  E+  GY F N  L   AL   +  ++    ++ L  +GD  L L++  + +    
Sbjct: 15  RLSNTEEATGYIFTNPELCLDAL--RTAGYTPGGGHKGLAQVGDAALRLVLVMVGYEK-- 70

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            A   +++       S    ++   E  L   +  +  +          I A  V++++ 
Sbjct: 71  GASREQINDALRVRASNIHLARQGFEKCLEKCVYRTEGVVVS-----QKIMATTVQAVLG 125

Query: 125 ALYLDG 130
           A+Y+D 
Sbjct: 126 AVYIDC 131


>gi|254577996|ref|XP_002494984.1| ZYRO0B00704p [Zygosaccharomyces rouxii]
 gi|238937874|emb|CAR26051.1| ZYRO0B00704p [Zygosaccharomyces rouxii]
          Length = 244

 Score = 51.2 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 18/140 (12%)

Query: 22  LLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL---------- 71
           L+ +  TH S +H  +   E+L  LG + L    +     H D                 
Sbjct: 81  LVLQCFTHKSFAHGSKPYNEKLNVLGSQFLKYQAAIHSLRHKDQLSPVPSDNVQQPLNGL 140

Query: 72  ------SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM--TSIQADVVESLI 123
                 +     ++S  + +Q  +E  L S I            +    ++    + +L+
Sbjct: 141 NFTNLGTAVAKLIISKISTAQYIKEKQLDSLIFWKMRDATKDGRYNGENTVFTSALNALV 200

Query: 124 AALYLDGGIEVAGTFVDKYW 143
            A+ +  G E A  FV +  
Sbjct: 201 GAILISNGPEKAANFVQQVL 220


>gi|158293152|ref|XP_314491.4| AGAP010518-PA [Anopheles gambiae str. PEST]
 gi|157016821|gb|EAA09936.5| AGAP010518-PA [Anopheles gambiae str. PEST]
          Length = 849

 Score = 51.2 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%)

Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
           LK     +   + L E+A       P Y++   SGP H   F   V ++GL  
Sbjct: 768 LKINTDGKHPVSILCEYATKHKWNAPMYELVHESGPGHAKNFIFKVLVNGLEY 820


>gi|326471909|gb|EGD95918.1| hypothetical protein TESG_03381 [Trichophyton tonsurans CBS 112818]
 gi|326477227|gb|EGE01237.1| hypothetical protein TEQG_00290 [Trichophyton equinum CBS 127.97]
          Length = 160

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 46/127 (36%), Gaps = 6/127 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           R   +E  + Y F +++L   AL       +  +    L  +G  ++ L + T  ++   
Sbjct: 15  RTKAMEDLLEYRFKDKTLPLSALNLPG-RRTSIKDNTGLAQVGKAVMELFLITDGYDK-- 71

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
                 +S     ++     + +     L   +     +R    +      A  V++L+ 
Sbjct: 72  DMDPENISTLLTFVLDNSKLADIGTNKGLGRCMM---GMRSSTANLTPLYTARTVQALMG 128

Query: 125 ALYLDGG 131
           A+YLD  
Sbjct: 129 AVYLDSD 135


>gi|126338334|ref|XP_001374261.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 332

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 76/241 (31%), Gaps = 29/241 (12%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ-----------------ESYERLEFLG 47
                  R+   F+   LL+ A  +     S +                    + L   G
Sbjct: 72  EVQAFCHRLHENFS-LELLKTAFINRCYIESEETRRQKLGVDKEAVALNLRDNQELSEQG 130

Query: 48  DRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107
                  ++  L + + S     +    + L S +    VAR L +   + +S++     
Sbjct: 131 RAFSQTCLTQFLGDAYPSLPSEGIKAIVDFLTSEDIVCHVARNLAVEQ-LTLSAEFPVPQ 189

Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR----DAKTELQE 163
                 +      ++I AL    G +    F+  +   +      F      +    L +
Sbjct: 190 M-----VLQQTFFAVIGALLQSSGPQKTSIFIRDFLITQMTGKELFEMWKVVNPMGLLVD 244

Query: 164 WAHAKFGVTPEYKVTFRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
               +    PE ++T +SG     P + V +       A+G   +   AE+ AA   L++
Sbjct: 245 ELTKRNISAPEPRITRQSGSSTVLPLYFVGLYCEKKLIAEGPGETVLVAEEEAARVALRK 304

Query: 223 E 223
            
Sbjct: 305 L 305


>gi|239614866|gb|EEQ91853.1| RNAse III [Ajellomyces dermatitidis ER-3]
 gi|327352306|gb|EGE81163.1| RNAse III [Ajellomyces dermatitidis ATCC 18188]
          Length = 152

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 9/126 (7%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           R S  E+  GY F N  L   AL   +  ++    ++ L  +GD  L L++  + +    
Sbjct: 15  RLSDTEEATGYIFTNPELCLDAL--RTAGYTPGGGHKGLAQVGDAALRLVLVMVGYEK-- 70

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
            A   +++       S    ++   E  L   +  +  +          I A  V++++ 
Sbjct: 71  GASREQINDALRVRASNIHLARQGFEKCLEKCVYRTEGVVVS-----QKIMATTVQAVLG 125

Query: 125 ALYLDG 130
           A+Y+D 
Sbjct: 126 AVYIDC 131


>gi|307207077|gb|EFN84886.1| tRNA-dihydrouridine synthase 2-like [Harpegnathos saltator]
          Length = 512

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 6/70 (8%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVA 215
            KT L +W        P Y         +D  F  VV + G        + +K+ AEQ A
Sbjct: 433 PKTRLCKWTKDHHKKMPVYDTRK-----NDKLFCSVVTVDGRKYGSSFWEKNKKWAEQGA 487

Query: 216 AAEVLKREGI 225
           A   L   GI
Sbjct: 488 ALVCLYFLGI 497


>gi|145501763|ref|XP_001436862.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124404006|emb|CAK69465.1| unnamed protein product [Paramecium tetraurelia]
          Length = 177

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 58/166 (34%), Gaps = 25/166 (15%)

Query: 16  AFANRSLLEKALT----HSSISHSYQES------YERLEFLG-DRILGLLISTLLFNHFD 64
            F +  LL+KA+T    H       +++       E L  LG D I         F    
Sbjct: 16  EFRHPELLKKAMTFKQYHQEYMSRNKDNPLKQGINENLIELGQDLIDFYYNDFFFFQDLP 75

Query: 65  SAKE------GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
           +          E+      ++S +  + +A +L L S + VS +   D     + I A  
Sbjct: 76  NKTHKTFKTYSEIRRLKQLVLSEKNLADIAVQLGLKSQMFVSINPNSD-LKNNSKILAQT 134

Query: 119 VESLIAALYLD--GGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162
           ++++I A Y D    + V    +   +      S       K  LQ
Sbjct: 135 LKAVIGAQYFDKKKDLNVLRDLLQVLFLDLIKISLV-----KNSLQ 175


>gi|330930517|ref|XP_003303063.1| hypothetical protein PTT_15099 [Pyrenophora teres f. teres 0-1]
 gi|311321187|gb|EFQ88819.1| hypothetical protein PTT_15099 [Pyrenophora teres f. teres 0-1]
          Length = 269

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 51/145 (35%), Gaps = 28/145 (19%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN---------------------HF 63
            A+TH S  H  Q   +RL +LG RI+ L  S  L +                       
Sbjct: 111 LAVTHKSFEHGKQGFNDRLAYLGRRIVELQTSQALISAPQEYQWPRDAMGKPKPDEFGRK 170

Query: 64  DSAKE------GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQA 116
                      G  +   + ++S    + +A +  L    R       +   S + ++  
Sbjct: 171 PYLHPALNGLQGLTNEAESLILSKSRLAPIAEQYGLDKVTRWKPMRADNLKGSGIETVLM 230

Query: 117 DVVESLIAALYLDGGIEVAGTFVDK 141
             + +++ A+ L+ G EVA   V +
Sbjct: 231 TTLYAIVGAVALERGGEVANKLVQE 255


>gi|194210388|ref|XP_001489530.2| PREDICTED: DEAH (Asp-Glu-Ala-His) box polypeptide 9 [Equus
           caballus]
          Length = 1272

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213
           D K  L  W   K  +TP Y++    G  +  +FT  V + G     GM  S  K+ A+ 
Sbjct: 3   DVKNFLYAWC-GKRKMTPSYEIRAV-GNKNRQKFTCEVRVEGYNY-TGMGNSTNKKDAQS 59

Query: 214 VAAAE 218
            AA +
Sbjct: 60  NAARD 64



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210
           +AK  L ++   +  +  EYK T   GPDH+  F   + I      + +       +K+ 
Sbjct: 180 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 237

Query: 211 AEQVAAAEVLKRE 223
           A Q  A  ++++ 
Sbjct: 238 AAQSCALSLVRQL 250


>gi|194758212|ref|XP_001961356.1| GF13828 [Drosophila ananassae]
 gi|190622654|gb|EDV38178.1| GF13828 [Drosophila ananassae]
          Length = 1339

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213
            D K+ L E+  +K  + P+  V  ++GP +  RF   V +        G   +K+ AE+
Sbjct: 1   MDIKSFLYEYC-SKSRIEPKLDV-RQTGPKNRQRFLCEVRVDQNNYIGVGNSTNKKDAEK 58

Query: 214 VAAAE 218
            A  +
Sbjct: 59  NACRD 63



 Score = 37.7 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI-----SGLAPAQGMDCSKRA 210
           +AK  L  +  A      +YK T   GPDH   F   + I          A+    +K+A
Sbjct: 172 NAKDRLNMYKQANNIRD-DYKYTPV-GPDHARSFMAELSIFVPALKRKVTARETGSNKKA 229

Query: 211 AEQVAAAEVLKRE 223
           A +  A  ++++ 
Sbjct: 230 ASKSCALSLVRQL 242


>gi|221114051|ref|XP_002158541.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 615

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 14/101 (13%)

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ---EWAHAKFGVTPEYKVTFR-- 180
           +Y D   +          +++           K  LQ   E+    F  T  +       
Sbjct: 356 IYTDADFDEQAALTTDNQRKKKQAVPVI----KNPLQKLYEYCQLHFKKTIAFNKLDECF 411

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           SG      F V V +  L    G   +K+ A+  AA   L+
Sbjct: 412 SG-----LFYVEVLVGFLRYGVGQGDNKKNAKYAAAQATLE 447


>gi|326429032|gb|EGD74602.1| DEAH box polypeptide 34 [Salpingoeca sp. ATCC 50818]
          Length = 1912

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 4/78 (5%)

Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS--GL 198
           + ++   +   +  + AK+ + E+  A     P+  V  ++GP     FT    +     
Sbjct: 804 ELYRPPRMPRAEAGKTAKSVVMEYCQALKRTKPK-VVVKQTGPQEASTFTAYCRVDWFDQ 862

Query: 199 AP-AQGMDCSKRAAEQVA 215
               QG D  K+ AE  A
Sbjct: 863 PIVFQGTDKRKKDAEHRA 880



 Score = 44.7 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 16/42 (38%)

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           GP H P F   V +  L         K+ A Q A  + ++  
Sbjct: 28  GPPHMPTFECTVSVGSLVSCSARGGGKKTAMQDACKQAVEAL 69


>gi|145486836|ref|XP_001429424.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|74830341|emb|CAI39051.1| Ribonuclease with two RNaseIII domains [Paramecium tetraurelia]
 gi|124396516|emb|CAK62026.1| unnamed protein product [Paramecium tetraurelia]
          Length = 725

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 13/121 (10%)

Query: 19  NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           N   +E+A++  S +   Q +Y+ LE LGD ++  L S +LF       E  LS     L
Sbjct: 343 NLDRVEEAISCPSFNS--QRNYQNLEMLGDVVIKYLTSAMLFEDSKYKTENTLSSARVRL 400

Query: 79  VSAETCSQVARELDLASFI------RVSSDLRKDVCSFMTSIQ-----ADVVESLIAALY 127
           ++ +  S +   L L +        ++ + +   +     S       AD+ E+L  A Y
Sbjct: 401 ITNKHLSSIYGNLKLNAMNFKINSKKLLNHMMMIINEHEDSKLSQKQQADIYEALCGACY 460

Query: 128 L 128
           +
Sbjct: 461 I 461



 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 61/183 (33%), Gaps = 54/183 (29%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLI-------STL 58
           +   +  +G      +L+ +A+T         + +ERLEF GD IL LL+          
Sbjct: 530 FEEFQDYLGCK---LNLIAEAMT--------VDQFERLEFFGDAILELLVIVNVHKECEK 578

Query: 59  LFNHFDS--------------AKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDL 103
           L+ +                    G L     SL+ +     +A   +   + R +  ++
Sbjct: 579 LYYNPRQQQLCREGKITQKLLLCPGMLHTAKISLLDSGFMGTMAIYHNFHQYARNLPKEI 638

Query: 104 RKDVCS---------------------FMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
           +  +                        +  I +D+ ES+ A + ++ G E       + 
Sbjct: 639 QNSIKKALALLRQDQFTDFRRINQYSQQIPKIMSDLWESVAACILVEYGWEKVIEIYGEM 698

Query: 143 WKQ 145
           +K 
Sbjct: 699 YKP 701


>gi|208690885|gb|ACI31218.1| eukaryotic translation initiation factor 2-alpha kinase 2
           [Erythrocebus patas]
          Length = 550

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 6/59 (10%)

Query: 164 WAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            A  K   T  YK   +   GP+    F    +I     + G   +K+ A+Q+AA   L
Sbjct: 108 IAQKKRL-TVNYKQCTSGVHGPEG---FHYKCKIGEKEYSIGTGSTKQEAKQLAAKLAL 162



 Score = 37.0 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           EL ++   + G+T  Y+    +GP HD RFT  V        +    S
Sbjct: 13  ELNKYRQKQ-GITFSYQELPNTGPPHDRRFTFRVVTDRREFPEAEGRS 59


>gi|208690873|gb|ACI31212.1| eukaryotic translation initiation factor 2-alpha kinase 2
           [Chlorocebus aethiops]
          Length = 550

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 6/59 (10%)

Query: 164 WAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            A  K   T  YK   +   GP+    F    +I     + G   +K+ A+Q+AA   L
Sbjct: 108 IAQKKRL-TVNYKQCTSGVHGPEG---FHYKCKIGEKEYSIGTGSTKQEAKQLAAKLAL 162



 Score = 37.0 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           EL ++   + G+T  Y+    +GP HD RFT  V        +    S
Sbjct: 13  ELNKYRQKQ-GITFSYQELPNTGPPHDRRFTFRVVTDRREFPEAEGRS 59


>gi|54289574|gb|AAV32090.1| interferon-induced dsRNA-dependent protein kinase [Chlorocebus
           aethiops]
          Length = 550

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 6/59 (10%)

Query: 164 WAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            A  K   T  YK   +   GP+    F    +I     + G   +K+ A+Q+AA   L
Sbjct: 108 IAQKKRL-TVNYKQCTSGVHGPEG---FHYKCKIGEKEYSIGTGSTKQEAKQLAAKLAL 162



 Score = 37.0 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           EL ++   + GVT  Y+    +GP HD RFT  V        +    S
Sbjct: 13  ELNKYRQKQ-GVTFSYQELPNTGPPHDRRFTFRVVTDRREFPEAEGRS 59


>gi|326469157|gb|EGD93166.1| 60S ribosomal protein L3 [Trichophyton tonsurans CBS 112818]
          Length = 375

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 3/95 (3%)

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTP 173
           A+ V +L+ A+YL GG   A TF ++++K R L         +   +L +    +    P
Sbjct: 246 ANFVRALMGAVYLHGGRRAAKTFFEEHFKSRQLPIADLFGFTEPTRDLSKLCKREGFEAP 305

Query: 174 EYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCS 207
             KV   +G     P F V +        +G   S
Sbjct: 306 VAKVISETGRLSRHPVFIVGIFSGKDKLGEGAGSS 340


>gi|156554948|ref|XP_001602039.1| PREDICTED: similar to conserved hypothetical protein [Nasonia
           vitripennis]
          Length = 350

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 1/73 (1%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQ 213
           +   + L E+   +    P Y+     GPD    +  +V ++G+     +   +K+ A+ 
Sbjct: 277 KHPVSLLGEYCSKRKYGAPRYQEFCECGPDKKKSYLFMVVVNGITYKPAVANPNKKLAKV 336

Query: 214 VAAAEVLKREGIW 226
            AA   L+  G+ 
Sbjct: 337 EAAQLCLQSLGVL 349


>gi|194764929|ref|XP_001964580.1| GF22976 [Drosophila ananassae]
 gi|190614852|gb|EDV30376.1| GF22976 [Drosophila ananassae]
          Length = 649

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 5/69 (7%)

Query: 156 DAKT---ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           + K+    L E+        P Y+  F+   +    ++  V +  L    G   SK+ A+
Sbjct: 373 NGKSYVCILHEYVQHALKTQPTYE--FKELQNAATPYSATVSVKNLKYGTGFGTSKKQAK 430

Query: 213 QVAAAEVLK 221
             AA   L+
Sbjct: 431 SEAARITLE 439


>gi|326485368|gb|EGE09378.1| 54S ribosomal protein L3 [Trichophyton equinum CBS 127.97]
          Length = 390

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 3/95 (3%)

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTP 173
           A+ V +L+ A+YL GG   A TF ++++K R L         +   +L +    +    P
Sbjct: 246 ANFVRALMGAVYLHGGRRAAKTFFEEHFKSRQLPIADLFGFTEPTRDLSKLCKREGFEAP 305

Query: 174 EYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCS 207
             KV   +G     P F V +        +G   S
Sbjct: 306 VAKVISETGRLSRHPVFIVGIFSGKDKLGEGAGSS 340


>gi|312371610|gb|EFR19749.1| hypothetical protein AND_21879 [Anopheles darlingi]
          Length = 1007

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 24/61 (39%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
              +    +K     +   + L E+A  +    P Y++   SGP H   F   V ++GL 
Sbjct: 918 RSRFPPNQVKVCTEGKHPVSILGEYASKRKWNAPMYELVHESGPGHAKNFIFKVLVNGLE 977

Query: 200 P 200
            
Sbjct: 978 Y 978


>gi|315049681|ref|XP_003174215.1| 54S ribosomal protein L3 [Arthroderma gypseum CBS 118893]
 gi|311342182|gb|EFR01385.1| 54S ribosomal protein L3 [Arthroderma gypseum CBS 118893]
          Length = 391

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 3/95 (3%)

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTP 173
           A+ V +L+ A+YL GG   A  F ++++K R L         +   +L +    +    P
Sbjct: 247 ANFVRALMGAVYLHGGRRAAKAFFEEHFKSRQLPIADLFGFTEPTRDLSKLCKREGFEAP 306

Query: 174 EYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCS 207
             KV   +G     P F V +        +G   S
Sbjct: 307 VAKVISETGRLSRHPVFIVGIFSGKDKLGEGAGSS 341


>gi|158341011|ref|YP_001522178.1| exoribonuclease II [Acaryochloris marina MBIC11017]
 gi|158311252|gb|ABW32864.1| exoribonuclease II [Acaryochloris marina MBIC11017]
          Length = 623

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 8/68 (11%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVA 215
           + L E          E+++       H+  F     +     +    G+  SK+ A+  A
Sbjct: 547 SLLMELCQGLQWPQAEFEIVE-----HEQGFHCECRLKVDDEVIIGSGIASSKKTAKHRA 601

Query: 216 AAEVLKRE 223
           A  V+++ 
Sbjct: 602 ARPVVEQL 609


>gi|296863416|pdb|3ADJ|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular
           Implications Processing
          Length = 76

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 24/63 (38%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           K  LQE+A       P Y+           +FT  VEI G+        +K+ AE  A  
Sbjct: 7   KNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGR 66

Query: 218 EVL 220
             L
Sbjct: 67  TAL 69


>gi|302505978|ref|XP_003014946.1| hypothetical protein ARB_06705 [Arthroderma benhamiae CBS 112371]
 gi|302660380|ref|XP_003021870.1| hypothetical protein TRV_04047 [Trichophyton verrucosum HKI 0517]
 gi|291178517|gb|EFE34306.1| hypothetical protein ARB_06705 [Arthroderma benhamiae CBS 112371]
 gi|291185788|gb|EFE41252.1| hypothetical protein TRV_04047 [Trichophyton verrucosum HKI 0517]
          Length = 390

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 3/95 (3%)

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTP 173
           A+ V +L+ A+YL GG   A TF ++++K R L         +   +L +    +    P
Sbjct: 246 ANFVRALMGAVYLHGGRRAAKTFFEEHFKSRQLPIADLFGFTEPTRDLSKLCKREGFEAP 305

Query: 174 EYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCS 207
             KV   +G     P F V +        +G   S
Sbjct: 306 VAKVISETGRLSRHPVFIVGIFSGKDKLGEGAGSS 340


>gi|297740221|emb|CBI30403.3| unnamed protein product [Vitis vinifera]
          Length = 853

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 161 LQEWAHAKFGVTPEYK-VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           LQE    +     E++ V   S    D +F+V V  +G     GM  +++ A+Q AA   
Sbjct: 679 LQEIG-RRCSSKVEFRSVVSTSK---DLQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENA 734

Query: 220 L 220
           L
Sbjct: 735 L 735


>gi|225440662|ref|XP_002274594.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 859

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 161 LQEWAHAKFGVTPEYK-VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           LQE    +     E++ V   S    D +F+V V  +G     GM  +++ A+Q AA   
Sbjct: 685 LQEIG-RRCSSKVEFRSVVSTSK---DLQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENA 740

Query: 220 L 220
           L
Sbjct: 741 L 741


>gi|146419064|ref|XP_001485497.1| hypothetical protein PGUG_03225 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 230

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 50/145 (34%), Gaps = 18/145 (12%)

Query: 15  YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL--- 71
           YA ++  L  + LTH S  +  +   E+L  +G ++L L  +    +   +A E  +   
Sbjct: 71  YAISD-ELALQVLTHKSFGNGIKPYNEKLSAMGLKVLNLYCAKYTTDTPTTANENAIDGK 129

Query: 72  ------SVRFNSLVSAETCSQVARELDLASFIR-----VSSDLRKDVCSFMTSIQADVVE 120
                 S     L         A+   L   +       S             + A ++ 
Sbjct: 130 NVDVLGSPMAKELAGRLALGLFAKSHKLNQVLFWKSYNHSLGFEASG---EMKVSAQMMY 186

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQ 145
           +LI A+    G  VA  F+ +   +
Sbjct: 187 ALIGAVTFTHGKTVAEEFILEKLMK 211


>gi|322786736|gb|EFZ13103.1| hypothetical protein SINV_10097 [Solenopsis invicta]
          Length = 159

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           LQE    K G  P Y    +S    D +F   V    L  A G+  SK+ A+Q AA  +L
Sbjct: 11  LQEVL-IKEGCAPSYNFEEKSTNTIDRQFLCNVSCKELN-ASGIGISKKEAKQNAAKNML 68



 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 4/44 (9%)

Query: 156 DAKTELQEWAHAKFGVTPE---YKVTFRSGPDHDPRFTVVVEIS 196
           +   +LQE+   +  + P+   Y++    GP H   FT+ V + 
Sbjct: 114 NYVGKLQEFCQQQ-KINPKDILYELISEEGPRHLRTFTIRVNVG 156


>gi|33322517|gb|AAQ06986.1|AF496312_1 ribonuclease III [Lactobacillus delbrueckii subsp. lactis]
          Length = 41

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           V V + G   A G   +K+ AEQ AA+  L+   
Sbjct: 1   VEVLVDGKKXASGEGRNKKKAEQDAASHALEHLN 34


>gi|82582931|gb|ABB84391.1| interferon resistance protein [Orf virus]
          Length = 166

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + + E+         E+  T   G DH PRFT  + ISG   +     SK+ A   A
Sbjct: 92  NPVSAVNEFCMMTRRPL-EFCETRSGGEDHCPRFTCTITISGKVVSVADGASKKLARHAA 150

Query: 216 AAEVL 220
            A  L
Sbjct: 151 CASAL 155


>gi|82582929|gb|ABB84390.1| interferon resistance protein [Orf virus]
          Length = 166

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + + E+         E+  T   G DH PRFT  + ISG         SK+ A   A
Sbjct: 92  NPVSAVNEFCMMTHRPL-EFSETRAGGEDHCPRFTCTITISGKVVTVADGASKKLARHTA 150

Query: 216 AAEVL 220
            A  L
Sbjct: 151 CASAL 155


>gi|82582921|gb|ABB84386.1| interferon resistance protein [Orf virus]
 gi|82582923|gb|ABB84387.1| interferon resistance protein [Orf virus]
          Length = 166

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + + E+         E+  T   G DH PRFT  + ISG         SK+ A   A
Sbjct: 92  NPVSAVNEFCMMTHRPL-EFSETRAGGEDHCPRFTCTITISGKVVTVADGASKKLARHTA 150

Query: 216 AAEVL 220
            A  L
Sbjct: 151 CASAL 155


>gi|82582939|gb|ABB84395.1| interferon resistance protein [Orf virus]
          Length = 166

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + + E+         E+  T   G DH PRFT  + ISG         SK+ A   A
Sbjct: 92  NPVSAVNEFCMMTHRPL-EFSETRAGGEDHCPRFTCTITISGKVVTVADGASKKLARHTA 150

Query: 216 AAEVL 220
            A  L
Sbjct: 151 CASAL 155


>gi|82582937|gb|ABB84394.1| interferon resistance protein [Orf virus]
          Length = 166

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + + E+         E+  T   G DH PRFT  + ISG         SK+ A   A
Sbjct: 92  NPVSAVNEFCMMTHRPL-EFSETRAGGEDHCPRFTCTITISGKVVTVADGASKKLARHTA 150

Query: 216 AAEVL 220
            A  L
Sbjct: 151 CASAL 155


>gi|316962794|gb|EFV48776.1| ribosome biogenesis protein BOP1 [Trichinella spiralis]
          Length = 292

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           + L E    K G+TP Y++    G   D  F   + I  +  + G   SK+ A+Q AA
Sbjct: 207 SLLHEIC-GKKGLTPMYELLTSQGQGVDSLFVYRLCIDSVV-STGRGKSKKLAKQNAA 262


>gi|293335075|ref|NP_001167848.1| hypothetical protein LOC100381550 [Zea mays]
 gi|223944409|gb|ACN26288.1| unknown [Zea mays]
          Length = 264

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 15/89 (16%)

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
             Q+       R+ A++ L E   A +   PE+++    GP H  +FT  V I       
Sbjct: 164 INQKEYHGDMVRKTARSFLYELCAANYWKPPEFELCNDEGPSHLRKFTCKVLIE----IT 219

Query: 203 GMDCS-----------KRAAEQVAAAEVL 220
           G   S           KRAA++ AA   L
Sbjct: 220 GTSVSLLECYSDPKLQKRAAQEHAAEGAL 248



 Score = 38.5 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 8/71 (11%)

Query: 156 DAKTELQEWAHAKF--GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAE 212
           D   EL+E           PE   T  +G  H     V V I+G   +    + + + A 
Sbjct: 4   DPMRELRETCQYNGFDLGLPE--PTKYNGEFHVK---VEVNINGKMISCTAANRNSKDAR 58

Query: 213 QVAAAEVLKRE 223
           +VAA E L + 
Sbjct: 59  KVAAQETLSKL 69


>gi|2984731|gb|AAC08018.1| interferon resistance determinant protein [Orf virus]
 gi|74230732|gb|ABA00537.1| DsRNA-binding, interferon resistance [Orf virus]
          Length = 183

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + + E+         E+  T   G DH PRFT  + ISG   A     SK+ A   A
Sbjct: 109 NPVSAVNEFCMMTHRPL-EFCETRAGGEDHCPRFTCTITISGKVVAVADGASKKLARHTA 167

Query: 216 AAEVL 220
            +  L
Sbjct: 168 CSSAL 172


>gi|282856560|ref|ZP_06265833.1| double-stranded RNA-binding domain protein [Pyramidobacter
           piscolens W5455]
 gi|282585603|gb|EFB90898.1| double-stranded RNA-binding domain protein [Pyramidobacter
           piscolens W5455]
          Length = 365

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 3/78 (3%)

Query: 146 RALKSGKFRRDA--KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203
           R L+    +     K  LQ          P Y      G   +P F V +++SG     G
Sbjct: 81  RDLELAGLKNSPELKGRLQTCCERLGIGQPHYVDLPSPG-GKNPLFFVELQLSGEPIVNG 139

Query: 204 MDCSKRAAEQVAAAEVLK 221
              SKRAA Q AA ++L+
Sbjct: 140 SGQSKRAAGQAAAWKMLQ 157



 Score = 49.7 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 8/53 (15%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA------E--QVAAAE 218
           EY++  + GP+H P FT     +G   A+    SK+ A      E  + AA +
Sbjct: 20  EYRIVAKEGPEHKPVFTAAAFRNGARVAEAGGPSKKDALKALVREVGKAAARQ 72


>gi|256080367|ref|XP_002576453.1| hypothetical protein [Schistosoma mansoni]
 gi|238661721|emb|CAZ32690.1| expressed protein [Schistosoma mansoni]
          Length = 764

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 5/48 (10%)

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQ-----GMDCSKRAAEQVAAAEVLK 221
             SGP H+  F V V I+  +        G+  S + A ++AA   L+
Sbjct: 33  EESGPFHNKVFRVSVIINHHSLKSSEIYYGVGSSVKEARRMAAESALQ 80


>gi|221113037|ref|XP_002167363.1| PREDICTED: similar to neuron-specific staufen [Hydra
           magnipapillata]
          Length = 493

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           + L E A     + P YKV   SGP H   F V + +    P +G+  S
Sbjct: 8   SILYELA-KTNRLLPVYKVVADSGPPHQKTFQVHLYVGCHGPFEGIGNS 55



 Score = 49.7 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 4/66 (6%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQVA 215
             + L E A         +     SGP H   F V  E++      + M   K+ A+ +A
Sbjct: 199 YISLLYEKA-VLHNFQIHFTTIHESGPAHLRFFHVKCEVNDKETVGEAMG--KKNAKNIA 255

Query: 216 AAEVLK 221
           A ++LK
Sbjct: 256 AEKMLK 261



 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 2/71 (2%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           +  T L +    +      Y +    G       F +   I+    + G   SKR A+  
Sbjct: 291 NPVTYLTQLIQLRKEPPVTYTMKAIPGDQSGALLFQIEAAITNFK-SVGCGHSKREAKAN 349

Query: 215 AAAEVLKREGI 225
           AA  +LK  GI
Sbjct: 350 AAMNLLKSLGI 360


>gi|164658275|ref|XP_001730263.1| hypothetical protein MGL_2645 [Malassezia globosa CBS 7966]
 gi|159104158|gb|EDP43049.1| hypothetical protein MGL_2645 [Malassezia globosa CBS 7966]
          Length = 294

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/150 (26%), Positives = 55/150 (36%), Gaps = 20/150 (13%)

Query: 21  SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA--------KEGELS 72
           +L+  ALTH S  H  Q    RL F+G R L   +S   F+  + A            L 
Sbjct: 117 TLVSHALTHESWMHGMQGHNRRLAFIGRRALKTYLSLFFFDILEHARRTNSSVSDVEYLQ 176

Query: 73  VRFNS------LVSAETCSQV-ARELDLASFIRVSSDLRKDVCSFMT-----SIQADVVE 120
              +S      + S      V A  L L   +R  S +R D  S         ++   VE
Sbjct: 177 NLLSSQQHVDDIASTHHLGIVSAANLCLEKVMRWHSTVRMDPVSGPQESGLFKVRGSCVE 236

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKS 150
            LI A+Y   G +VA  F          ++
Sbjct: 237 GLIGAIYHYKGAQVAQQFFLSRILLPLTEA 266


>gi|327268577|ref|XP_003219073.1| PREDICTED: hypothetical protein LOC100565234 [Anolis carolinensis]
          Length = 1126

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 64/183 (34%), Gaps = 14/183 (7%)

Query: 45   FLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLR 104
            F G     +L S  L N    A   +      + VS    +Q+ R++      R    L 
Sbjct: 938  FTGSTGAQVLSSEQLSNSGPQAWVKKDQFLRAAPVSGGMGAQLMRKMGW----REGEGLG 993

Query: 105  KDVCSFMTSIQADVVESLIAALYLDG-GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQE 163
            K+       I  D  ++       D  G+   G    K     +       +   + L E
Sbjct: 994  KNKEGNKEPILVD-FKT-------DRKGLVAVGEKTQKRRGPFSAVKDLSGKHPVSALLE 1045

Query: 164  WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQVAAAEVLKR 222
              + +    P + +   + P++   F   V ++G+      +  +K+ A+ VAA   L+ 
Sbjct: 1046 VCNKRRWSPPVFVLVNDNRPEYRKNFLFKVMVNGVEHKPTFVSPNKKHAKAVAATVALQA 1105

Query: 223  EGI 225
             G+
Sbjct: 1106 LGL 1108


>gi|331219058|ref|XP_003322206.1| ATP-dependent RNA helicase A [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309301196|gb|EFP77787.1| ATP-dependent RNA helicase A [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 1575

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 3/92 (3%)

Query: 137 TFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH-DPRF--TVVV 193
             + K+W        ++ ++ K  L  +        P+Y       P    P F  TV +
Sbjct: 83  QEIRKFWTANLPPRPEWSQNPKGILNNFCQHLTHPLPKYHSQQVILPGFTQPLFRATVHL 142

Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           EI+      G D SK+ AE++AA  V  + G+
Sbjct: 143 EIAPDIVGIGDDLSKKEAEKIAALSVCFQLGM 174


>gi|301170840|dbj|BAJ12034.1| virus interferon resistance [Orf virus]
          Length = 183

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + + E+         E+  T   G DH PRFT  + ISG   A     SK+ A   A
Sbjct: 109 NPVSAVNEFCMMTHRPL-EFSETRAGGEDHCPRFTCTITISGKVVAAADGASKKLARHTA 167

Query: 216 AAEVL 220
            +  L
Sbjct: 168 CSSAL 172


>gi|118090288|ref|XP_420624.2| PREDICTED: similar to testis nuclear RNA binding protein [Gallus
           gallus]
          Length = 570

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
           D +         K   +  + L  +A  ++ +  ++K T  +G      F +   + G+ 
Sbjct: 79  DAWLADLIAGYEKGTVNPVSALHRFAQ-RYSMQLDFKETGVAGHAISSYFGISAVLDGVY 137

Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223
              G+  SK+ ++Q AA   L   
Sbjct: 138 YKTGLGRSKKESKQSAAKLALDEL 161


>gi|311246431|ref|XP_003122205.1| PREDICTED: spermatid perinuclear RNA-binding protein-like [Sus
           scrofa]
          Length = 619

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
               +YK+  +SGP H P FT+ V++ G    +    SK+ A+
Sbjct: 399 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAK 440



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y++   +G  HD RF + VE+ G    +G   +
Sbjct: 459 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 505


>gi|73968133|ref|XP_863822.1| PREDICTED: similar to spermatid perinuclear RNA-binding protein
           isoform 7 [Canis familiaris]
          Length = 619

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 170 GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
               +YK+  +SGP H P FT+ V++ G    +    SK+ A+
Sbjct: 399 RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAK 440



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y++   +G  HD RF + VE+ G    +G   +
Sbjct: 459 KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 505


>gi|302698221|ref|XP_003038789.1| expressed protein [Schizophyllum commune H4-8]
 gi|300112486|gb|EFJ03887.1| expressed protein [Schizophyllum commune H4-8]
          Length = 409

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 62/161 (38%), Gaps = 11/161 (6%)

Query: 25  KALTHSSISHS-YQESYERLEFLGDRILGLLISTLLF-NHFDSAKEGELSVRFNSLVSAE 82
           +A TH S+S   +     +L  LG  +L   ++ LLF        + E+  +   L++ +
Sbjct: 117 EAFTHRSLSRPGHIIDGSQLAVLGLSVLDTTMTILLFRQQLPLLTDAEMVAKREELLTLD 176

Query: 83  TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              Q      L   +R +      + +     +  V  ++  A+Y+D GI     ++ + 
Sbjct: 177 KIEQWTVAYGLMDKLRCAPAAYASLKTAPERYR--VFLAVAGAIYVDHGILTMQNWLGQL 234

Query: 143 WKQRALKSGKFRRDAKTEL-----QEWAHAKFGVT--PEYK 176
               +        +  + +     Q+++  +   T  PEY+
Sbjct: 235 VYGESYAEEVAPPEPASTMPPQKKQKFSRGRGCSTRPPEYQ 275



 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 7/61 (11%)

Query: 168 KFGVTPEYKVTFRSGP----DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           K GV  EY+   + GP     H   + +V + +G+   +G   +K+ A++ AA +     
Sbjct: 350 KRGVRVEYETEGQMGPNQTTAH---WIMVCKANGIPKGRGFGKTKQIAKEFAARQAFTAL 406

Query: 224 G 224
           G
Sbjct: 407 G 407


>gi|66807247|ref|XP_637346.1| hypothetical protein DDB_G0287135 [Dictyostelium discoideum AX4]
 gi|60465766|gb|EAL63842.1| hypothetical protein DDB_G0287135 [Dictyostelium discoideum AX4]
          Length = 398

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 55/147 (37%), Gaps = 23/147 (15%)

Query: 8   TLEKRIGYAFAN--------RSLLEKALTH-SSISHSYQESYERLEFLGDRILGLLISTL 58
            L K +   F+           ++  +LTH  S+ +  +++  +L F G+      IS  
Sbjct: 126 KLLKDLNIKFSKNGNDDFEIPKIIIDSLTHCPSLQNEAEQN--KLRFFGELCYRHSISDS 183

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADV 118
               F+     E      S+ S+    +  +++ L+ FIR     + +  SF  SI    
Sbjct: 184 -EFSFNDQSIFE--EFRESIKSSYFLRERCKDIGLSEFIRF----QINSNSFYKSIYFSH 236

Query: 119 VE-----SLIAALYLDGGIEVAGTFVD 140
                    I ALYL+   +    F+ 
Sbjct: 237 YSYRCLIKFIGALYLETDFKTVRNFIH 263


>gi|301170812|dbj|BAJ12020.1| virus interferon resistance [Orf virus]
 gi|301170814|dbj|BAJ12021.1| virus interferon resistance [Orf virus]
 gi|301170820|dbj|BAJ12024.1| virus interferon resistance [Orf virus]
 gi|301170822|dbj|BAJ12025.1| virus interferon resistance [Orf virus]
 gi|301170834|dbj|BAJ12031.1| virus interferon resistance [Orf virus]
 gi|301170836|dbj|BAJ12032.1| virus interferon resistance [Orf virus]
 gi|301170838|dbj|BAJ12033.1| virus interferon resistance [Orf virus]
 gi|301170842|dbj|BAJ12035.1| virus interferon resistance [Orf virus]
 gi|301170844|dbj|BAJ12036.1| virus interferon resistance [Orf virus]
 gi|301170846|dbj|BAJ12037.1| virus interferon resistance [Orf virus]
 gi|301170848|dbj|BAJ12038.1| virus interferon resistance [Orf virus]
 gi|301170850|dbj|BAJ12039.1| virus interferon resistance [Orf virus]
          Length = 183

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + + E+         E+  T   G DH PRFT  + ISG   A     SK+ A   A
Sbjct: 109 NPVSAVNEFCMMTHRPL-EFCETRSGGEDHCPRFTCTITISGKVVAAADGASKKLARHTA 167

Query: 216 AAEVL 220
            +  L
Sbjct: 168 CSSAL 172


>gi|37594908|gb|AAQ94313.1| interferon resistance protein [Orf virus]
          Length = 183

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + + E+         E+  T   G DH PRFT  + ISG   A     SK+ A   A
Sbjct: 109 NPVSAVNEFCMMTHRPL-EFCETRSGGEDHCPRFTCTITISGKVVAAADGASKKLARHTA 167

Query: 216 AAEVL 220
            +  L
Sbjct: 168 CSSAL 172


>gi|37594906|gb|AAQ94312.1| interferon resistance protein [Orf virus]
          Length = 183

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + + E+         E+  T   G DH PRFT  + ISG   A     SK+ A   A
Sbjct: 109 NPVSAVNEFCMMTHRPL-EFCETRSGGEDHCPRFTCTITISGKVVAAADGASKKLARHTA 167

Query: 216 AAEVL 220
            +  L
Sbjct: 168 CSSAL 172


>gi|307776249|pdb|2L2M|A Chain A, Solution Structure Of The Second Dsrbd Of Hyl1
          Length = 77

 Score = 50.5 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 24/63 (38%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           K  LQE+A       P Y+           +FT  VEI G+        +K+ AE  A  
Sbjct: 10  KNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGR 69

Query: 218 EVL 220
             L
Sbjct: 70  TAL 72


>gi|121712950|ref|XP_001274086.1| RNase III domain protein [Aspergillus clavatus NRRL 1]
 gi|119402239|gb|EAW12660.1| RNase III domain protein [Aspergillus clavatus NRRL 1]
          Length = 259

 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 55/141 (39%), Gaps = 22/141 (15%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH-------------------FDS 65
            A+TH S     +   +RL F+G RI+ L  S  L  +                     +
Sbjct: 109 LAVTHKSFDQGRRGFNDRLAFIGKRIVQLQASLALVQNPGNASSSAASDSLGREPFAHPA 168

Query: 66  AKE-GELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQADVVESL 122
            +    LS    + L+S    +++A++ +L   +R S     +   S M  + A  + +L
Sbjct: 169 LEGLNNLSGNTKSFLMSKSKLAELAQKYELDKVLRWSPRKPNNLASSGMELVLAHTMYAL 228

Query: 123 IAALYLDGGIEVAGTFVDKYW 143
           + A+ L+ G  VA     +  
Sbjct: 229 VGAIALEKGGHVANKVAQERI 249


>gi|270005018|gb|EFA01466.1| hypothetical protein TcasGA2_TC007013 [Tribolium castaneum]
          Length = 4051

 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 6/67 (8%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             + LQE   A+    P Y +    G      F   V+  G   A G   SK+ A+  +A
Sbjct: 6   PISLLQELMAARGISLPVY-IEEGFGTS----FKCTVKAGG-VTACGYGTSKKNAKHESA 59

Query: 217 AEVLKRE 223
              L + 
Sbjct: 60  KNALVKL 66



 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 55/146 (37%), Gaps = 20/146 (13%)

Query: 86  QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL-IAALYLDGGIEVAGTFVDKY-- 142
             AR + L  +I           SF  +++A  V +        +   E A   + K   
Sbjct: 14  MAARGISLPVYI-----EEGFGTSFKCTVKAGGVTACGYGTSKKNAKHESAKNALVKLRR 68

Query: 143 ------WKQRALKSGKFRRDAKTELQEWAHAKFGVT-PEYKVTFRSGPDHDPRFTVVVEI 195
                  K RA ++    R+   EL E+A +++G   P Y     S    D  F      
Sbjct: 69  EDKSPEIKPRA-ENNNLFRNFVGELNEYAASRYGAKYPSYDFLTVS---VDGEFFFKCSF 124

Query: 196 SGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +    + G   +K+ A+Q +A ++L+
Sbjct: 125 ANEE-SIGEGMNKKDAKQDSARKMLE 149


>gi|194695624|gb|ACF81896.1| unknown [Zea mays]
          Length = 181

 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 48/145 (33%), Gaps = 10/145 (6%)

Query: 18  ANRSL---LEKALTHSSISH--SYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELS 72
            N  L   L+    H S       +  YERLE++G +I  L+++  L      A    L+
Sbjct: 38  RNIELGLGLQLCFLHPSKHKFEHPRFCYERLEYVGQKIQDLVMAERLLMKHLDAPGRWLA 97

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSS----DLRKDVCSFMTSIQADVVESLIAALYL 128
            +    +  + C +  R+  L  +I            +      S    V ++L    Y 
Sbjct: 98  EKHRRTLMNKYCGRYLRDKHLQHYIIYGETVQDRFEHNRRLRNPST-TSVQQALHGLAYC 156

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKF 153
             G       + + +    ++    
Sbjct: 157 VYGKPDVRRLMFEVFDFEQVQPKAV 181


>gi|189236895|ref|XP_967977.2| PREDICTED: C3PO protein [Tribolium castaneum]
          Length = 3759

 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 6/67 (8%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             + LQE   A+    P Y +    G      F   V+  G   A G   SK+ A+  +A
Sbjct: 6   PISLLQELMAARGISLPVY-IEEGFGTS----FKCTVKAGG-VTACGYGTSKKNAKHESA 59

Query: 217 AEVLKRE 223
              L + 
Sbjct: 60  KNALVKL 66


>gi|154297473|ref|XP_001549163.1| hypothetical protein BC1G_12333 [Botryotinia fuckeliana B05.10]
 gi|150858529|gb|EDN33721.1| hypothetical protein BC1G_12333 [Botryotinia fuckeliana B05.10]
          Length = 144

 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 55/147 (37%), Gaps = 15/147 (10%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSISHSYQES-----YERLEFLGDRILGLLISTLLFN 61
           + ++ ++ Y F    LL +AL  S +      +       RL  +GD ++ L    L++ 
Sbjct: 5   TYVKNKLDYDFKEDELLTEALVTSGVVFGANSTVERQGNRRLALIGDALIRL---ELVYT 61

Query: 62  HFDSAKEGELSVRF-NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
            +      E S +  +   S      + ++  L   +    + +K          A  VE
Sbjct: 62  KYLDGATLETSQKCVSKNASNRNLGAIGQQNGLIDQMIFPVNQQKPG----EYTVATTVE 117

Query: 121 SLIAALYLDG--GIEVAGTFVDKYWKQ 145
           +LI A++LD      V G  +     +
Sbjct: 118 ALIGAIWLDSEQDFGVIGRVIRALHIE 144


>gi|195434340|ref|XP_002065161.1| GK14818 [Drosophila willistoni]
 gi|194161246|gb|EDW76147.1| GK14818 [Drosophila willistoni]
          Length = 303

 Score = 50.1 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 8/71 (11%)

Query: 155 RDAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
            DAK+    LQE+        PEY      G D    F     +  +  A G   SKR A
Sbjct: 1   MDAKSAVSALQEFCAKTKNGPPEYNYID--GEDGG--FVCKASLLDME-AFGNGRSKRDA 55

Query: 212 EQVAAAEVLKR 222
           + +AA  +L++
Sbjct: 56  KHLAAVNILRK 66



 Score = 45.8 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAA 217
           EL+++        P  ++  +SG  + P F     ++ +        S  K+ A Q AA 
Sbjct: 96  ELRDYCVRHEMPLPVIEIVQQSGSPNAPEFVACCTVASITR---YGKSDKKKDARQRAAI 152

Query: 218 EVL 220
           E+L
Sbjct: 153 EML 155


>gi|297722713|ref|NP_001173720.1| Os03g0854400 [Oryza sativa Japonica Group]
 gi|255675058|dbj|BAH92448.1| Os03g0854400 [Oryza sativa Japonica Group]
          Length = 176

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 54/146 (36%), Gaps = 9/146 (6%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            +TL+ +I Y F    LL +A+TH+S S     +   L  LG        +         
Sbjct: 34  LATLQNQIAYRFHAPDLLRRAMTHASYSRENGRA---LAVLGLAASQSAAALRALAADHD 90

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A    +S R         C   A  + + S +RV++  +         +    + +LI A
Sbjct: 91  ASASAVSRRARDASGEAACVAAAARVGIPSIVRVAAGTKPTA----PPVVCGALRALIGA 146

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG 151
           + +D     A   V  +WK   L + 
Sbjct: 147 VAVDANSTHAAEEV--FWKLHVLTAA 170


>gi|169625366|ref|XP_001806087.1| hypothetical protein SNOG_15956 [Phaeosphaeria nodorum SN15]
 gi|111055674|gb|EAT76794.1| hypothetical protein SNOG_15956 [Phaeosphaeria nodorum SN15]
          Length = 577

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 52/131 (39%), Gaps = 27/131 (20%)

Query: 2   SALRYSTLEKRIGYAFANR-SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           S+     +E  I Y F ++   L KALT    + + +E ++  E          I+    
Sbjct: 3   SSASAQAVENIIAYKFQSKHDFLPKALT---AAGAVEEDWDAFE--------AGITRAYA 51

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           + F            + + S E  + VAR+  ++  IR +        +   S+ A  V 
Sbjct: 52  SDF-----------KSKVSSNEQRAFVARQTGISRHIRFNERE----GAQSPSVLAKAVN 96

Query: 121 SLIAALYLDGG 131
           ++I  ++LD G
Sbjct: 97  AIIGVVFLDCG 107


>gi|211956314|ref|YP_002302383.1| DsRNA binding PKR inhibitor [Deerpox virus W-1170-84]
 gi|115503109|gb|ABI99027.1| DsRNA binding PKR inhibitor [Deerpox virus W-1170-84]
          Length = 199

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            ++  + L E+          Y     SGP H P FT  + ISG+     +  +K+ A+ 
Sbjct: 124 DKNPCSVLNEYCQYTSRD--WYIDIISSGPIHKPLFTATLCISGVKFRSAIGSTKKEAKT 181

Query: 214 VAAAEVL 220
            A    +
Sbjct: 182 NATRMAM 188


>gi|41057456|ref|NP_957929.1| ORF020 dsRNA-binding PKR inhibitor [Bovine papular stomatitis
           virus]
 gi|41018772|gb|AAR98377.1| ORF020 dsRNA-binding PKR inhibitor [Bovine papular stomatitis
           virus]
          Length = 195

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + + E+          ++     G DH P FT  V +S    +    CSK+AA   A
Sbjct: 121 NPVSAVNEYCMRVHRPL-VFQECRTGGHDHCPLFTCTVVVSNKTVSTASGCSKKAARNAA 179

Query: 216 AAEVL 220
             + L
Sbjct: 180 CTDAL 184


>gi|296816815|ref|XP_002848744.1| 54S ribosomal protein L3 [Arthroderma otae CBS 113480]
 gi|238839197|gb|EEQ28859.1| 54S ribosomal protein L3 [Arthroderma otae CBS 113480]
          Length = 390

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 3/95 (3%)

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVTP 173
           A+ V +L+ A+YL GG   A +F ++++K R L         +   +L +    +    P
Sbjct: 246 ANFVRALMGAIYLHGGRRAAKSFFEEHFKSRQLPIADLFGFTEPTRDLSKLCKREGFEAP 305

Query: 174 EYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCS 207
             KV   +G     P F V +        +G   S
Sbjct: 306 VAKVISETGRLSRHPVFIVGIFSGKDKLGEGAGAS 340


>gi|207342841|gb|EDZ70480.1| YLR312W-Ap-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256270407|gb|EEU05604.1| Mrpl15p [Saccharomyces cerevisiae JAY291]
 gi|259148294|emb|CAY81541.1| Mrpl15p [Saccharomyces cerevisiae EC1118]
 gi|323336359|gb|EGA77627.1| Mrpl15p [Saccharomyces cerevisiae Vin13]
 gi|323347380|gb|EGA81652.1| Mrpl15p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 253

 Score = 49.7 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 57/133 (42%), Gaps = 13/133 (9%)

Query: 21  SLLEKALTHSSISHSYQESYERLEFLGDRILG-LLISTLLFNHFDSAK--EGELSVRFNS 77
            L+ + LTH S +H  +   E+L  LG + L        L N   +     G+LS++F++
Sbjct: 85  ELILQCLTHKSFAHGSKPYNEKLNLLGAQFLKLQTCIHSLKNGSPAESCENGQLSLQFSN 144

Query: 78  --------LVSAETCSQVARELDLASFI--RVSSDLRKDVCSFMTSIQADVVESLIAALY 127
                   L S  T     +  +L  FI  ++   ++    +  T+I A V+ + I A+ 
Sbjct: 145 LGTKFAKELTSKNTACTFVKLHNLGPFIFWKMRDPIKDGHINGETTIFASVLNAFIGAIL 204

Query: 128 LDGGIEVAGTFVD 140
              G E A  F+ 
Sbjct: 205 STNGSEKAAKFIQ 217


>gi|158289196|ref|XP_310950.4| AGAP000185-PA [Anopheles gambiae str. PEST]
 gi|157018938|gb|EAA06512.4| AGAP000185-PA [Anopheles gambiae str. PEST]
          Length = 631

 Score = 49.7 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           +      YKV  ++GP H P FT+ V + G     G   SK+
Sbjct: 12  ELKRNLVYKVESQTGPVHAPIFTISVVVDGQK-FVGTGPSKK 52


>gi|291390365|ref|XP_002711677.1| PREDICTED: dihydrouridine synthase 2-like, SMM1 homolog
           [Oryctolagus cuniculus]
          Length = 493

 Score = 49.7 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVA 215
            K  L EW   +    P Y+   R     D  F  VV ++     +   D SK+ AEQ A
Sbjct: 370 PKMCLLEWCRREKLAQPTYETVQR---PLDRLFCSVVTVAEQKYQSTLWDKSKKLAEQAA 426

Query: 216 AAEVLKREGI 225
           A   L+ +G+
Sbjct: 427 AIVCLRSQGL 436


>gi|119501793|ref|XP_001267653.1| RNase3 domain protein [Neosartorya fischeri NRRL 181]
 gi|119415819|gb|EAW25756.1| RNase3 domain protein [Neosartorya fischeri NRRL 181]
          Length = 127

 Score = 49.7 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 49/131 (37%), Gaps = 29/131 (22%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           +   +E+ IG+ F NR  L +AL   +     ++  ++L  +GD++LGL+ S        
Sbjct: 11  QLQAVEELIGFRFTNRHWLLEAL--QAAGLINRDRNKKLAIIGDKVLGLIAS-------- 60

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
                               ++    + L  +I  +             + A  VE+++ 
Sbjct: 61  ----------------NSYLAERGFLMGLDRYIVNNP---AQGGLIPAKLMATTVEAILG 101

Query: 125 ALYLDGGIEVA 135
           A+  D   ++ 
Sbjct: 102 AVARDSDSDLT 112


>gi|50555369|ref|XP_505093.1| YALI0F06732p [Yarrowia lipolytica]
 gi|49650963|emb|CAG77900.1| YALI0F06732p [Yarrowia lipolytica]
          Length = 207

 Score = 49.7 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 47/126 (37%), Gaps = 8/126 (6%)

Query: 21  SLLEKALTHSSISHSYQESYERLEFLGDRILGLLI-STLLFNHFDSAKEGELSVRFNSLV 79
           SLL + LTH S +       E+L F+G +   + + S  L     S     L        
Sbjct: 88  SLLLQVLTHKSFAGGLPSHNEKLAFVGRKFFPVSVLSHNLSKEASSDPVKALESL----- 142

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
                S  A +  L   +  ++       +  + I +  V +L+ A+ L  G + A  F 
Sbjct: 143 -NFDLSGFAAKNGLEKLVYWNTKG-VTNATPSSKITSGSVYALVGAILLKKGEKAAHEFA 200

Query: 140 DKYWKQ 145
            K  +Q
Sbjct: 201 QKVVQQ 206


>gi|323332393|gb|EGA73802.1| Mrpl15p [Saccharomyces cerevisiae AWRI796]
 gi|323353848|gb|EGA85703.1| Mrpl15p [Saccharomyces cerevisiae VL3]
          Length = 248

 Score = 49.7 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 57/133 (42%), Gaps = 13/133 (9%)

Query: 21  SLLEKALTHSSISHSYQESYERLEFLGDRILG-LLISTLLFNHFDSAK--EGELSVRFNS 77
            L+ + LTH S +H  +   E+L  LG + L        L N   +     G+LS++F++
Sbjct: 80  ELILQCLTHKSFAHGSKPYNEKLNLLGAQFLKLQTCIHSLKNGSPAESCENGQLSLQFSN 139

Query: 78  --------LVSAETCSQVARELDLASFI--RVSSDLRKDVCSFMTSIQADVVESLIAALY 127
                   L S  T     +  +L  FI  ++   ++    +  T+I A V+ + I A+ 
Sbjct: 140 LGTKFAKELTSKNTACTFVKLHNLGPFIFWKMRDPIKDGHINGETTIFASVLNAFIGAIL 199

Query: 128 LDGGIEVAGTFVD 140
              G E A  F+ 
Sbjct: 200 STNGSEKAAKFIQ 212


>gi|297699046|ref|XP_002826610.1| PREDICTED: LOW QUALITY PROTEIN: tRNA-dihydrouridine synthase 2-like
           [Pongo abelii]
          Length = 493

 Score = 49.7 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVA 215
            K  L EW   +    P Y+   R     D  F+ +V ++     +   D SK+ AEQ A
Sbjct: 370 PKMCLLEWCRREKLAQPVYETVQR---PVDRLFSSIVTVAEQKYQSTLWDKSKKLAEQAA 426

Query: 216 AAEVLKREGI 225
           A   L+ +G+
Sbjct: 427 AIVCLRSQGL 436


>gi|260940168|ref|XP_002614384.1| hypothetical protein CLUG_05870 [Clavispora lusitaniae ATCC 42720]
 gi|238852278|gb|EEQ41742.1| hypothetical protein CLUG_05870 [Clavispora lusitaniae ATCC 42720]
          Length = 409

 Score = 49.7 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 66/231 (28%), Gaps = 50/231 (21%)

Query: 39  SYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLA---- 94
           +   L  LG  +L   +S  L   +        +   ++ +  E  S + +   +     
Sbjct: 144 NNFGLSTLGKTLLSYYVSEHLLLRYPRLPMAVHNAAVDAYMGTEALSLIGKSWGIEVDSS 203

Query: 95  -----------SFIRVSS----------DLRKDVCSFMTS-------------------I 114
                       F++             ++ +     ++                     
Sbjct: 204 SKLQKHLAQEPEFLQYGKLRFLAENAKEEVEESGIHELSKEELATLDPSTNSYISKEQDA 263

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK--TELQEWAHAKFGVT 172
            A  V++++  LY   G +V   F+  +   R +   +  + +K   EL           
Sbjct: 264 YASAVKAIVGGLYTHAGEDVTKEFIRAHILSRKVPLTEMFQFSKPTRELARICEKLELEH 323

Query: 173 P-EYKVTFRSGP--DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           P E ++   +G    H   +       G    +G+  S   A+  A    L
Sbjct: 324 PLEVRLIAETGRLSAHA-IYVAGAFSGGDKLGEGVGSSLNEAKTRAVVNAL 373


>gi|159163523|pdb|1X48|A Chain A, Solution Structure Of The Second Dsrm Domain In
           Interferon- Induced, Double-Stranded Rna-Activated
           Protein Kinase
          Length = 88

 Score = 49.7 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 17/37 (45%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            RF    +I       G   +K+ A+Q+AA E  ++ 
Sbjct: 36  QRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKL 72


>gi|307176984|gb|EFN66290.1| Dosage compensation regulator [Camponotus floridanus]
          Length = 1243

 Score = 49.7 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 3/64 (4%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQV 214
           D K+   +W  AK G  P++ V   +GP H  RF   + + G      G   +K+ A+  
Sbjct: 3   DIKSFFHQWC-AKNGKEPQFDV-RPTGPKHRQRFLCELRVPGFDYVGAGNSTNKKDAQGN 60

Query: 215 AAAE 218
           AA +
Sbjct: 61  AAKD 64



 Score = 36.6 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QG--MDCSKRA 210
           +AK++L ++      +  +YK T   GPDH   F   + I          G     +K+ 
Sbjct: 164 NAKSKLHQFMQTN-KINADYKYTPV-GPDHTRSFMAEMSIYVKQLGRSITGRETGSNKQT 221

Query: 211 AEQVAAAEVLKRE 223
           A +  A  ++++ 
Sbjct: 222 ASKSCALSIVRQL 234


>gi|115495449|ref|NP_001068887.1| tRNA-dihydrouridine synthase 2-like [Bos taurus]
 gi|111308646|gb|AAI20343.1| Dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae) [Bos
           taurus]
 gi|296477934|gb|DAA20049.1| dihydrouridine synthase 2-like, SMM1 homolog [Bos taurus]
          Length = 493

 Score = 49.7 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVA 215
            K  L EW   +    P Y+   R     D  F  VV ++     +   D SK+ AEQ A
Sbjct: 370 PKMCLLEWCRREKLAQPVYETVQR---PLDRLFCSVVTVAEQKYQSTLWDKSKKLAEQAA 426

Query: 216 AAEVLKREGI 225
           A   L+ +G+
Sbjct: 427 AIVCLRSQGL 436


>gi|289629402|gb|AAB70372.2| Hypothetical protein F39E9.7 [Caenorhabditis elegans]
          Length = 125

 Score = 49.7 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 1/69 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +   +L E+A   +   P ++            F +          +G   SK  A++ A
Sbjct: 11  NPVAQLNEYAQKFYKKYPTFEFVKEQAVGKHRVFIIQATFEDKTL-EGRGPSKMIAKRAA 69

Query: 216 AAEVLKREG 224
           A  +L+  G
Sbjct: 70  AEAILESIG 78


>gi|255574401|ref|XP_002528114.1| double-stranded RNA binding protein, putative [Ricinus communis]
 gi|223532503|gb|EEF34293.1| double-stranded RNA binding protein, putative [Ricinus communis]
          Length = 786

 Score = 49.7 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 161 LQEWAHAKFGVTPEYK-VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           LQE    +     E++ V   S    D +F+V V  +G     GM  +++ A Q AA   
Sbjct: 611 LQEIG-RRCNSKVEFRSVVSTSK---DLQFSVEVLFTGEKIGIGMGKTRKDAHQQAAENA 666

Query: 220 LK 221
           L+
Sbjct: 667 LR 668


>gi|311265930|ref|XP_003130894.1| PREDICTED: double-stranded RNA-specific editase B2-like [Sus
           scrofa]
          Length = 899

 Score = 49.7 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
            K  L +    +     +Y+   ++GP H P F V V+++GL   +G    K+  +   A
Sbjct: 392 PKNALVQL--HELRPGLQYRTVSQTGPVHAPVFAVAVDVNGLT-FEGTGPIKKKLKMRRA 448

Query: 217 AEVLK 221
              L+
Sbjct: 449 ELALR 453


>gi|301608716|ref|XP_002933927.1| PREDICTED: eukaryotic translation initiation factor 2-alpha kinase
           3 [Xenopus (Silurana) tropicalis]
          Length = 384

 Score = 49.7 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAA---EVLKREG 224
            RFTV + I      +G   S++AA++ AA      L+  G
Sbjct: 3   KRFTVHLYIENEIFGEGQGRSRKAADKEAARTGLAALQNRG 43


>gi|238575785|ref|XP_002387790.1| hypothetical protein MPER_13270 [Moniliophthora perniciosa FA553]
 gi|215448580|gb|EEB88720.1| hypothetical protein MPER_13270 [Moniliophthora perniciosa FA553]
          Length = 361

 Score = 49.7 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 175 YKVT---FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV-LKR 222
           Y VT    + GP HDP +TVV E++G    +G   S + A   AA +  L +
Sbjct: 304 YTVTYAASKEGPPHDPVWTVVYELNGQTQGKGTGRSMQIATHAAATDAWLNK 355


>gi|148236950|ref|NP_001079771.1| mitochondrial ribosomal protein L44 [Xenopus laevis]
 gi|32450587|gb|AAH54195.1| MGC64346 protein [Xenopus laevis]
          Length = 322

 Score = 49.7 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 72/221 (32%), Gaps = 31/221 (14%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQ-----------------ESYERLEFLGDRI 50
              +R+  +F+   LL+ A  + +     +                 +  E+L  +G   
Sbjct: 64  AFSQRLNESFS-MQLLKTAFVNKTYVMQEEQQRQELGLDKETAMLNLQDNEQLAGVGSEF 122

Query: 51  LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110
               +   L   F +     +    + L S E    VA+ L +      S      +   
Sbjct: 123 TASYVQKTLEKAFPNLPPDGIKSLVDHLTSQEVVCHVAQNLAVEDLTLSSECPLDPLTIH 182

Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR----DAKTEL-QEWA 165
            T        ++  AL    G + AG F+  +   + +    F      D  + L QE +
Sbjct: 183 RT------FFAITGALLQSSGTQRAGLFIRDFLITQLIGKDLFDIWLIADPMSLLVQELS 236

Query: 166 HAKFGVTPEYKVTFRSGPDH-DPRFTVVVEISGLAPAQGMD 205
           H +    PE ++T   G     P + V +  +    A+G  
Sbjct: 237 H-RNLPLPEPRMTRECGAATVLPVYFVGLYCNKELIAEGPG 276


>gi|149699255|ref|XP_001498775.1| PREDICTED: similar to tRNA-dihydrouridine synthase 2-like (hDUS2)
           (Up-regulated in lung cancer) (URLC8) isoform 1 [Equus
           caballus]
          Length = 493

 Score = 49.7 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVA 215
            K  L EW   +    P Y+   R     D  F  VV ++     +   D SK+ AEQ A
Sbjct: 370 PKMCLLEWCRREKLAQPVYETVQR---PLDRLFCSVVTVAEQKYQSTLWDKSKKLAEQAA 426

Query: 216 AAEVLKREGI 225
           A   L+ +G+
Sbjct: 427 AIVCLRSQGL 436


>gi|190405368|gb|EDV08635.1| 60S ribosomal protein L15, mitochondrial precursor [Saccharomyces
           cerevisiae RM11-1a]
          Length = 234

 Score = 49.7 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 57/133 (42%), Gaps = 13/133 (9%)

Query: 21  SLLEKALTHSSISHSYQESYERLEFLGDRILG-LLISTLLFNHFDSAK--EGELSVRFNS 77
            L+ + LTH S +H  +   E+L  LG + L        L N   +     G+LS++F++
Sbjct: 66  ELILQCLTHKSFAHGSKPYNEKLNLLGAQFLKLQTCIHSLKNGSPAESCENGQLSLQFSN 125

Query: 78  --------LVSAETCSQVARELDLASFI--RVSSDLRKDVCSFMTSIQADVVESLIAALY 127
                   L S  T     +  +L  FI  ++   ++    +  T+I A V+ + I A+ 
Sbjct: 126 LGTKFAKELTSKNTACTFVKLHNLGPFIFWKMRDSIKDGHINGETTIFASVLNAFIGAIL 185

Query: 128 LDGGIEVAGTFVD 140
              G E A  F+ 
Sbjct: 186 STNGSEKAAKFIQ 198


>gi|37594904|gb|AAQ94311.1| interferon resistance protein [Orf virus]
          Length = 183

 Score = 49.7 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + + E+         E+  T   G DH PRFT  + ISG   A     SKR A   A
Sbjct: 109 NPVSAVNEFCMMTHRPL-EFCETRSGGEDHCPRFTCTITISGKVVAAADGASKRLARHTA 167

Query: 216 AAEVL 220
            +  L
Sbjct: 168 CSSAL 172


>gi|149636339|ref|XP_001515991.1| PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box polypeptide 9
           [Ornithorhynchus anatinus]
          Length = 1325

 Score = 49.7 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213
           D K  L  W   K  VTP Y++    G  +  +F   V + G     GM  S  K+ A+ 
Sbjct: 3   DVKNFLYAWC-GKRKVTPTYEIRAV-GNKNRQKFMCEVRVEGFNY-TGMGNSTNKKDAQS 59

Query: 214 VAAAE 218
            AA +
Sbjct: 60  NAARD 64



 Score = 43.9 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 7/66 (10%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV--VEI---SGLAPAQGMDCSKRA 210
           +AK  L ++   +  V  EYK T   GPDH+  F     V +        A+    +K+ 
Sbjct: 185 NAKARLNQFFQKE-KVQGEYKYTQV-GPDHNRSFIAEMTVYVKQLGRRIFAREHGSNKKL 242

Query: 211 AEQVAA 216
           A Q  A
Sbjct: 243 AAQSCA 248


>gi|7504924|pir||T23094 hypothetical protein H15N14.1a - Caenorhabditis elegans
          Length = 959

 Score = 49.7 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 5/62 (8%)

Query: 166 HAKFGVTPEYK----VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             K      Y+    V   +G      F     I       G+  SK+ A+  AA + LK
Sbjct: 534 QTKQKCKIAYEFKDNVPPVAGQA-TTTFYCECVIDETDRYIGVGRSKKLAKSEAAMQALK 592

Query: 222 RE 223
           + 
Sbjct: 593 KL 594


>gi|47220991|emb|CAF98220.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 363

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           +     +YK+  ++GP H P FT+ VE+ G    +    SKR A+
Sbjct: 312 QLKPGLQYKLVSQTGPVHVPVFTMSVEVDGTV-FEASGPSKRTAK 355


>gi|39951763|ref|XP_363598.1| hypothetical protein MGG_01524 [Magnaporthe oryzae 70-15]
 gi|145020632|gb|EDK04761.1| hypothetical protein MGG_01524 [Magnaporthe oryzae 70-15]
          Length = 413

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 5/95 (5%)

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTELQEWAHAKFGVT 172
            ++ V +L  A+Y   G E A  F++ +   R L        +   TEL      +    
Sbjct: 268 HSNFVRALTGAVYAHCGREAAKLFINAHILSRHLDIATLFSFKRPTTELARLCAREDFAE 327

Query: 173 PEYKVTFRSGPDHD--PRFTVVVEISGLAPAQGMD 205
           P  ++   +G  H   P F V +        +G  
Sbjct: 328 PTARILSETGR-HSRTPVFVVGIFSGNDKLGEGSG 361



 Score = 35.4 bits (81), Expect = 5.9,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 25/69 (36%)

Query: 27  LTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQ 86
           L   S     + +   L  LG +++   ++  L   +       L    +S     + S+
Sbjct: 108 LIDRSADKDIRFNNYSLSRLGSQLIEYHVNEWLMCRYPRLPYSVLLAARDSYAGELSLSE 167

Query: 87  VARELDLAS 95
           +++   + S
Sbjct: 168 ISKSWGVES 176


>gi|156054704|ref|XP_001593278.1| predicted protein [Sclerotinia sclerotiorum 1980]
 gi|154703980|gb|EDO03719.1| predicted protein [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 329

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 72/165 (43%), Gaps = 22/165 (13%)

Query: 9   LEKRIGYAFANRSLLEKALTHS-----SISHSYQ---ESYERLEFLGDRILGLLIST-LL 59
           L+  + Y+F N  +LE+AL        S+  + +   +    +  LG+ ++ L++     
Sbjct: 158 LQSYLSYSFLNPDILEEALETPKNGVTSVGTTRRICMDGNAGMAKLGEMVMRLVLREQFY 217

Query: 60  FNHFDSAKEGELSVR---FNSLVSAETCSQVARELDLASFIRVS-----SDLRKDVCSFM 111
                 A+  +++ R    +SL +  T +   R      +I VS       +++D     
Sbjct: 218 LFSIPHAQAAQITNRVLSRHSLNAYPTIASCIRP---QPYIPVSFRNIIELVKEDTREDS 274

Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD 156
           T   +  V+++I A+YLDGGIE A   ++    Q  +K     RD
Sbjct: 275 TRAISRAVKAVIGAVYLDGGIENAKKVMENL--QMGIKLPPGSRD 317


>gi|32563643|ref|NP_492153.2| Adenosine Deaminase that acts on RNA family member (adr-1)
           [Caenorhabditis elegans]
 gi|25004982|emb|CAB09530.2| C. elegans protein H15N14.1c, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 964

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 5/62 (8%)

Query: 166 HAKFGVTPEYK----VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             K      Y+    V   +G      F     I       G+  SK+ A+  AA + LK
Sbjct: 539 QTKQKCKIAYEFKDNVPPVAGQA-TTTFYCECVIDETDRYIGVGRSKKLAKSEAAMQALK 597

Query: 222 RE 223
           + 
Sbjct: 598 KL 599


>gi|24620504|gb|AAN61050.1| ADR-1D [Caenorhabditis elegans]
          Length = 912

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 5/62 (8%)

Query: 166 HAKFGVTPEYK----VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             K      Y+    V   +G      F     I       G+  SK+ A+  AA + LK
Sbjct: 468 QTKQKCKIAYEFKDNVPPVAGQA-TTTFYCECVIDETDRYIGVGRSKKLAKSEAAMQALK 526

Query: 222 RE 223
           + 
Sbjct: 527 KL 528


>gi|33415071|gb|AAQ18043.1| double-stranded RNA-binding protein [Orf virus]
          Length = 183

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + + E+         E+  T   G DH PRFT  + ISG   +     SK+ A   A
Sbjct: 109 NPVSAVNEFCMMTRRPL-EFCETRSGGEDHCPRFTCTITISGKVVSVADGASKKLARHTA 167

Query: 216 AAEVL 220
            +  L
Sbjct: 168 CSSAL 172


>gi|328714433|ref|XP_003245358.1| PREDICTED: hypothetical protein LOC100570158 [Acyrthosiphon pisum]
          Length = 540

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDP-RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           LQE+  A+    P+Y+    +   +    ++V+  I G     G+  SK+ A+  AA  +
Sbjct: 207 LQEYCQARGLDLPKYEYHQDNDIKNKRYMYSVICSI-GKCKCTGVGISKQIAKNHAARLM 265

Query: 220 LKR 222
             +
Sbjct: 266 YIQ 268



 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 9/106 (8%)

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTE--------LQEWAHAKFGVTPEYKVTF 179
           +D G+ ++           AL      ++ KT+        LQE   A+    P+Y+   
Sbjct: 290 IDFGLGLSKNEAKNNTVNIALDQIYHGKN-KTKMSANYIGTLQEKCAARGWELPKYEYHQ 348

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
            +  +    F  V+  +G   + G+  SK+ A+  AA  V  +  +
Sbjct: 349 ENDNEIHKLFYSVICSAGPYKSTGVGNSKQLAKNQAAQIVCDQINL 394


>gi|115433847|ref|XP_001217060.1| predicted protein [Aspergillus terreus NIH2624]
 gi|114189912|gb|EAU31612.1| predicted protein [Aspergillus terreus NIH2624]
          Length = 151

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 8/119 (6%)

Query: 15  YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVR 74
           Y F NR L+ +AL     +       + L   GD IL  ++             G +  R
Sbjct: 24  YRFINRDLIREAL--QGCAPYNPSGNKSLALAGDAILRQVLVDYGRER--QTTPGRIPFR 79

Query: 75  FNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
              ++   T   +A E+   + I  +    +       ++ A  +E++I A+Y D   +
Sbjct: 80  NPQIICKLTAPFMADEIQ--NTITQNPG--QWGVVAGKNVMATTMEAIIGAVYYDSNKD 134


>gi|145473673|ref|XP_001462500.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|74830346|emb|CAI39052.1| Ribonuclease with two RNaseIII domains [Paramecium tetraurelia]
 gi|124430340|emb|CAK95127.1| unnamed protein product [Paramecium tetraurelia]
          Length = 721

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 44/151 (29%), Gaps = 35/151 (23%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
                E+ +G      S L +A+T         E YERLEFLGD IL  LI   +    +
Sbjct: 521 SLDKFEQFLGCK---LSRLNEAMT--------VEDYERLEFLGDAILEFLIVANVHKECE 569

Query: 65  S---------------------AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDL 103
                                    G L     SL+       +A       +      L
Sbjct: 570 KYYYSQDQQQMCREGKLESKLLLCPGMLHTAKISLLDNGFMGTMALYHGYHQYAI---GL 626

Query: 104 RKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
            ++  + +  +   + +      YL      
Sbjct: 627 CQETQNEIEKVLEALRQEEFNEFYLINQYST 657



 Score = 43.1 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 44/120 (36%), Gaps = 12/120 (10%)

Query: 33  SHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELD 92
           S + + +Y+ LE LGD ++  L S +LF       E  LS     L++ +  S V   L 
Sbjct: 351 SSNLERNYQNLEMLGDSVIKYLTSAMLFEDKGLNNESLLSSLRIKLITNKHLSDVYSILQ 410

Query: 93  L---ASFIRVSSDLRKDVCSFMT--------SIQADVVESLIAALYL-DGGIEVAGTFVD 140
           +    S I           +             QAD+ E++  A Y+ D        F  
Sbjct: 411 IRTMNSKIHYKKVRNHMTTTINDVDDFKLSRKQQADIYEAICGACYIRDYEFSDVIKFFK 470


>gi|294659131|ref|XP_461474.2| DEHA2F26092p [Debaryomyces hansenii CBS767]
 gi|202953643|emb|CAG89895.2| DEHA2F26092p [Debaryomyces hansenii]
          Length = 364

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/247 (13%), Positives = 68/247 (27%), Gaps = 52/247 (21%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           L +AL           +   L  LG  +L   +S  L   +        +V  +S + + 
Sbjct: 84  LSQALNLKKY--DGLANNFGLNTLGKTLLSYYVSEHLLVKYPRLPMPIHNVAVDSYMGSN 141

Query: 83  TCSQVARELD--------LASFI-----------------------------RVSSDLRK 105
               + +           L  ++                              +S +   
Sbjct: 142 ALFDIGKIWGIQVDTTSKLEKYLSQEPEFMQYGKLRFISEEFKNEVKESGVFELSEEEIA 201

Query: 106 DVCSFMTSIQADVVES-------LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK 158
            +     +  +   E+       +I  LY   G +V   F+  +   R L   +  + +K
Sbjct: 202 SINKENNTYLSKETEAYASAVRSIIGGLYTHAGEDVTKQFIHDHILSRKLPLDQMFQFSK 261

Query: 159 --TELQEWAHAKFGVTP-EYKVTFRSGP--DHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
              EL           P E ++   +G    H   +            +G+  S + A+ 
Sbjct: 262 PTRELVRLCEKLNFTEPVEIRLIAETGRLSSHA-IYVAGAFSGVEKLGEGVGSSLQEAKT 320

Query: 214 VAAAEVL 220
            A    L
Sbjct: 321 RAVVNAL 327


>gi|32563645|ref|NP_492154.2| Adenosine Deaminase that acts on RNA family member (adr-1)
           [Caenorhabditis elegans]
 gi|27753105|emb|CAD60417.1| C. elegans protein H15N14.1d, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 912

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 5/62 (8%)

Query: 166 HAKFGVTPEYK----VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             K      Y+    V   +G      F     I       G+  SK+ A+  AA + LK
Sbjct: 468 QTKQKCKIAYEFKDNVPPVAGQA-TTTFYCECVIDETDRYIGVGRSKKLAKSEAAMQALK 526

Query: 222 RE 223
           + 
Sbjct: 527 KL 528


>gi|307176614|gb|EFN66082.1| 39S ribosomal protein L44, mitochondrial [Camponotus floridanus]
          Length = 213

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 63/182 (34%), Gaps = 11/182 (6%)

Query: 47  GDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD 106
           G+++   ++   L      A E  +   +N L+S E  ++VA  +     I         
Sbjct: 18  GEQLTSEIVQNYLTQVLPLAPESVIISLYNYLLSEEILAKVACHIGAKDIILT---EEHP 74

Query: 107 VCSFMTSIQADVVESLIAAL--YLDGGIEV--AGTFVDKYWKQRALKSGKFRRDAKTELQ 162
           V        +D   +L+AAL   +D          F+     ++ L       +    L 
Sbjct: 75  VT---EKTLSDTFFALVAALAESVDANHAANFVKDFLIVLLAEKDLTEIWNPAEPVEILN 131

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +    +     E ++  ++G +     + + +         G   + + A+ VAA  VL 
Sbjct: 132 DVLQKQNRALAEPRLIGKAGQNTLLVVYHIAMYSDKKFLGSGFGQTIQEAKNVAAINVLS 191

Query: 222 RE 223
           R 
Sbjct: 192 RM 193


>gi|332030651|gb|EGI70339.1| Dosage compensation regulator [Acromyrmex echinatior]
          Length = 1202

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQV 214
           D K+   +W  AK G  P++ V   +GP H  RF   + I G      G   +K+ A+  
Sbjct: 3   DIKSFFHQWC-AKNGKEPQFDV-RPTGPKHRQRFLCELRIPGFDYVGAGNSTNKKDAQGN 60

Query: 215 AAAE 218
           AA +
Sbjct: 61  AARD 64


>gi|151940843|gb|EDN59225.1| YmL15 [Saccharomyces cerevisiae YJM789]
          Length = 234

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 57/133 (42%), Gaps = 13/133 (9%)

Query: 21  SLLEKALTHSSISHSYQESYERLEFLGDRILG-LLISTLLFNHFDSAK--EGELSVRFNS 77
            L+ + LTH S +H  +   E+L  LG + L        L N   +     G+LS++F++
Sbjct: 66  ELILQCLTHKSFAHGSKPYNEKLNLLGAQFLKLQTCIHSLKNGSPAESCENGQLSLQFSN 125

Query: 78  --------LVSAETCSQVARELDLASFI--RVSSDLRKDVCSFMTSIQADVVESLIAALY 127
                   L S  T     +  +L  FI  ++   ++    +  T+I A V+ + I A+ 
Sbjct: 126 LGTKFAKELTSKNTACTFVKLHNLGPFIFWKMRDPIKDGHINGETTIFASVLNAFIGAIL 185

Query: 128 LDGGIEVAGTFVD 140
              G E A  F+ 
Sbjct: 186 STNGSEKAAKFIQ 198


>gi|29126353|gb|AAO66545.1| hypothetical protein Os03g63740 [Oryza sativa Japonica Group]
 gi|108712167|gb|ABF99962.1| expressed protein [Oryza sativa Japonica Group]
          Length = 213

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 54/146 (36%), Gaps = 9/146 (6%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            +TL+ +I Y F    LL +A+TH+S S     +   L  LG        +         
Sbjct: 34  LATLQNQIAYRFHAPDLLRRAMTHASYSRENGRA---LAVLGLAASQSAAALRALAADHD 90

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
           A    +S R         C   A  + + S +RV++  +         +    + +LI A
Sbjct: 91  ASASAVSRRARDASGEAACVAAAARVGIPSIVRVAAGTKPTA----PPVVCGALRALIGA 146

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSG 151
           + +D     A   V  +WK   L + 
Sbjct: 147 VAVDANSTHAAEEV--FWKLHVLTAA 170


>gi|32563647|ref|NP_871801.1| Adenosine Deaminase that acts on RNA family member (adr-1)
           [Caenorhabditis elegans]
 gi|27753106|emb|CAD60418.1| C. elegans protein H15N14.1e, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 893

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 5/62 (8%)

Query: 166 HAKFGVTPEYK----VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             K      Y+    V   +G      F     I       G+  SK+ A+  AA + LK
Sbjct: 468 QTKQKCKIAYEFKDNVPPVAGQA-TTTFYCECVIDETDRYIGVGRSKKLAKSEAAMQALK 526

Query: 222 RE 223
           + 
Sbjct: 527 KL 528


>gi|24620514|gb|AAN61051.1| ADR-1E [Caenorhabditis elegans]
          Length = 893

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 5/62 (8%)

Query: 166 HAKFGVTPEYK----VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             K      Y+    V   +G      F     I       G+  SK+ A+  AA + LK
Sbjct: 468 QTKQKCKIAYEFKDNVPPVAGQA-TTTFYCECVIDETDRYIGVGRSKKLAKSEAAMQALK 526

Query: 222 RE 223
           + 
Sbjct: 527 KL 528


>gi|327409791|ref|YP_004347211.1| putative ribonuclease III [Lausannevirus]
 gi|326784965|gb|AEA07099.1| putative ribonuclease III [Lausannevirus]
          Length = 319

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 32/91 (35%), Gaps = 1/91 (1%)

Query: 18  ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA-KEGELSVRFN 76
            N +    A TH ++      +YE  E LGD ++   I   + +          L+   +
Sbjct: 29  NNLAKFRVAFTHKTVQSGDDNNYELYELLGDSLVNAAILRYISSIRPDITDVETLTRIKH 88

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDV 107
            + S    S ++        + +  +  K +
Sbjct: 89  YIQSRAFLSLLSLRNGYFEHVVLGEEFAKSI 119


>gi|327300969|ref|XP_003235177.1| hypothetical protein TERG_04230 [Trichophyton rubrum CBS 118892]
 gi|326462529|gb|EGD87982.1| hypothetical protein TERG_04230 [Trichophyton rubrum CBS 118892]
          Length = 267

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 56/145 (38%), Gaps = 22/145 (15%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH-----------------FDSAK 67
           +A+TH S     +   +RL + G +I+ L  S  L  +                 +DSA 
Sbjct: 115 QAVTHKSFDQGRRGFNDRLAYFGKQIILLQASLALVQNPTAYAQPSKPDPFERLPYDSAA 174

Query: 68  EGEL----SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC-SFMTSIQADVVESL 122
              L        + L   +  S +AR   +   +R    ++ D+  S + +I    + ++
Sbjct: 175 LKGLEVLSQNTRSQLTRKKQMSALARHYGINEVMRWVPRMQHDLTESGVDTIYTHAMYAV 234

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA 147
           I A+ L+ G +VA   V     +  
Sbjct: 235 IGAIALEHGSKVANEIVRDRILKPL 259


>gi|24620493|gb|AAN61049.1| ADR-1C [Caenorhabditis elegans]
          Length = 964

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 5/62 (8%)

Query: 166 HAKFGVTPEYK----VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             K      Y+    V   +G      F     I       G+  SK+ A+  AA + LK
Sbjct: 539 QTKQKCKIAYEFKDNVPPVAGQA-TTTFYCECVIDETDRYIGVGRSKKLAKSEAAMQALK 597

Query: 222 RE 223
           + 
Sbjct: 598 KL 599


>gi|168010927|ref|XP_001758155.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690611|gb|EDQ76977.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 893

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 1/71 (1%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
                  +    L+E    +  +  ++K    +G      F   VE+ G    +G   S 
Sbjct: 822 NEEPLPYNHVGALKELC-TREAINIQFKALPSTGVGQRQIFRCQVEVGGRTLGRGSGPSW 880

Query: 209 RAAEQVAAAEV 219
             A+Q AA E 
Sbjct: 881 DDAKQQAAKEA 891


>gi|147900893|ref|NP_001087171.1| spermatid perinuclear RNA-binding protein [Xenopus laevis]
 gi|82182202|sp|Q6DCD0|STRBP_XENLA RecName: Full=Spermatid perinuclear RNA-binding protein
 gi|50415523|gb|AAH78118.1| Strbp-prov protein [Xenopus laevis]
          Length = 686

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 7/74 (9%)

Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
           + K    + +   +        L      +     +YK+  +SGP H P FT+ V++ G 
Sbjct: 374 LSKILDSKPIDPNQ----PMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGT 427

Query: 199 APAQGMDCSKRAAE 212
              +    SK+ A+
Sbjct: 428 TH-EASGPSKKTAK 440



 Score = 41.2 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y++   SG  HD RF + VE+      +G   +
Sbjct: 511 KNPVMELNEKRRGL--KYELISESGGSHDKRFIMEVEVDAQK-FKGAGPN 557


>gi|73957464|ref|XP_546866.2| PREDICTED: similar to dihydrouridine synthase 2-like (SMM1, S.
           cerevisiae) [Canis familiaris]
          Length = 560

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 52/142 (36%), Gaps = 16/142 (11%)

Query: 86  QVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG-IEVAGTFVDKYWK 144
           ++     L +F     +  +++ +    + A   E+    +    G I++A  F  + + 
Sbjct: 376 EICEAFGLGAF---YEETTRELNARRAELLARTPEAAREPVEDTSGVIKMAVKFDRRAYS 432

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQG 203
            +           K  L EW   +    P Y    R     D  F  VV ++     +  
Sbjct: 433 PQIT--------PKMCLLEWCRKEKLAQPVYDTVQR---PLDRLFCSVVTVAEQKYQSTL 481

Query: 204 MDCSKRAAEQVAAAEVLKREGI 225
            D SK+ AEQ AA   L+  G+
Sbjct: 482 WDKSKKLAEQAAAIVCLRSRGL 503


>gi|170587044|ref|XP_001898289.1| Probable ATP-dependent RNA helicase A [Brugia malayi]
 gi|158594684|gb|EDP33268.1| Probable ATP-dependent RNA helicase A, putative [Brugia malayi]
          Length = 1431

 Score = 49.3 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 52/176 (29%), Gaps = 30/176 (17%)

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSI----------- 114
               EL     S++ A       R+  +   I ++        +   S+           
Sbjct: 105 LDPTELPKLTASMLEATNLDSFGRD-SVEDVILLNKAEENSYTTTNVSMNMQFIPSSRIK 163

Query: 115 --QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT 172
                 +E     + L   +++          +  +  G    ++K  L E+        
Sbjct: 164 TEHQRYIEQKAEEIALSESVDL----------RTHIHGGWTADNSKMHLNEFVQKIKQPP 213

Query: 173 PEYKVTFRSGPDHDPRFTVVV-----EISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             Y +    G D+   F   V     ++     A+    +K+ AE   A  ++++ 
Sbjct: 214 LRYDIRSI-GTDNSRTFVAEVSLFVPKVRCTFSARAEGSTKKTAEATCALSLMRQL 268


>gi|289740327|gb|ADD18911.1| mitochondrial ribosomal protein L44 [Glossina morsitans morsitans]
          Length = 325

 Score = 48.9 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 78/233 (33%), Gaps = 31/233 (13%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQ---------------ESYERLEFLGDRILGLLI 55
           KR+   F    LL+ ALT  S     +               +    L   G R+    I
Sbjct: 72  KRLNEDFQ-VPLLQTALTQESYVAKEKLKQEELGVENADIQLKHNAELAEHGQRLAKAYI 130

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
              + +              + L++ +T + VA  L +   + + +D      +   S+ 
Sbjct: 131 EAFVAHSLPKMPAEGHKAVTSYLLTVDTLAHVALHLGMKE-LLMDADYPPSSDAMSRSLL 189

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYW----KQRALKSGKFRRDAKTELQEWAHAKFGV 171
                ++I  L    G+E A +FV  +      Q+ L         +  L++    K   
Sbjct: 190 -----AVIGCLQQSSGLERAFSFVRDFICTQLNQKDLMEIWHIDKPEEVLKQVCRQKGIS 244

Query: 172 TPEYKVTFRSGPDHDPR---FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            PE ++    G   +     + V +  +     +G       A Q+AA + L+
Sbjct: 245 EPEPRLIADCGR--NTILAAYFVGLYSNKKLLGKGFGEDINTATQLAALDALQ 295


>gi|255949164|ref|XP_002565349.1| Pc22g14250 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211592366|emb|CAP98713.1| Pc22g14250 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 255

 Score = 48.9 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 50/147 (34%), Gaps = 24/147 (16%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN---------------------HF 63
            A+TH S     +   +RL FLG RI+ L  S  L                         
Sbjct: 103 LAVTHKSFDQGRRGFNDRLAFLGKRIVQLQASLALAQDAPYAGASPVENKDEFGRVPFTH 162

Query: 64  DSAKE-GELS-VRFNSLVSAETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQADVVE 120
            +      LS      L      +++A + +L   +R S     D   S +  + A  + 
Sbjct: 163 PALDGLNNLSGETKKILTERSKLAELANKYELQKVLRWSPRKPNDLRASGVELVLAHTMY 222

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRA 147
           +++ A+ L+ G  VA     +   +  
Sbjct: 223 AIVGAVSLEKGGVVATKVARERILEPL 249


>gi|195401473|ref|XP_002059337.1| GJ18398 [Drosophila virilis]
 gi|194142343|gb|EDW58749.1| GJ18398 [Drosophila virilis]
          Length = 1362

 Score = 48.9 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQ 213
            D K+ L  +  AK    P+++V   +GP H  RF   V +      A G   +K+ AE+
Sbjct: 1   MDIKSFLFSYC-AKNQTEPKFEV-RPTGPKHRQRFLCEVRVDQCPYVAVGNSTNKKDAEK 58

Query: 214 VAAAE 218
            A+ +
Sbjct: 59  NASRD 63



 Score = 37.4 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 20/112 (17%)

Query: 129 DGGIEVAGTFVDKYWKQRALKSGK------------FRRDAKTELQEWAHAKFGVTPEYK 176
           DGG +   + +D   +Q+ +   +               +AK  L  +  +      +YK
Sbjct: 131 DGGRDR-FSIIDHVQEQKDMNEAESIDVNAAIHGNWTIENAKDRLNIYKQSNNIRD-DYK 188

Query: 177 VTFRSGPDHDPRFTVVVEI-----SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            T   GPDH   F   + I          A+    +K++A +  A  ++++ 
Sbjct: 189 YTPV-GPDHARSFMAELSIFVPALKRKVTARETGSNKKSASKSCALSLVRQL 239


>gi|331241462|ref|XP_003333379.1| hypothetical protein PGTG_15163 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309312369|gb|EFP88960.1| hypothetical protein PGTG_15163 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 373

 Score = 48.9 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 73/235 (31%), Gaps = 66/235 (28%)

Query: 30  SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK----EGELSVRF---------N 76
           ++     +   E L  LG+ ILG+L S  L   +             +            
Sbjct: 75  TNFLDDEKLHNEELATLGNSILGMLGSEWLDRRYPYLPTKSAPYSYHLIRYFSAFQAALT 134

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY-LDG----- 130
             V   TC+ VAR   ++S     + L          I++  V +    ++ LDG     
Sbjct: 135 MYVGPRTCADVARLWGVSS----GTGLSNLTIEGKPKIESAGVYA--GGIFDLDGKPKNK 188

Query: 131 ----------GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYK---- 176
                     G EVA   + ++      ++  F +D K      +  K GV   Y+    
Sbjct: 189 GQKHKQDGSKGEEVAQPGLLRW-----RRADGFEKD-KEIGMRASAFKQGVL--YEDAMA 240

Query: 177 ---------VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                    V    G     +F            +    SK+ AE  A  + L+R
Sbjct: 241 SVSRAFVGMVYSLHGMKAARQF----------LGEAFGTSKKMAEYRAHEDALRR 285


>gi|82469836|gb|ABB77176.1| R2D2 [Drosophila melanogaster]
          Length = 311

 Score = 48.9 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            + A + LQE+        P Y       P  D  +   VE+  +  A G   SKR A+ 
Sbjct: 3   NKSAVSALQEFCARTQINLPTYSFI----PGEDGGYVCKVELLEIE-AIGNGRSKRDAKH 57

Query: 214 VAAAEVLKR 222
           +AA+ +L++
Sbjct: 58  LAASNILRK 66



 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS- 207
           +     RD   EL+++   +    P  +V  +SG    P F     ++ +        S 
Sbjct: 88  ELTNLNRDMVKELRDYCVRREMPLPCIEVVQQSGTPSAPEFVACCSVASIVR---YGKSD 144

Query: 208 -KRAAEQVAAAEVL 220
            K+ A Q AA E+L
Sbjct: 145 KKKDARQRAAIEML 158


>gi|116006497|ref|NP_013416.2| Mrpl15p [Saccharomyces cerevisiae S288c]
 gi|3123277|sp|P36523|RM15_YEAST RecName: Full=54S ribosomal protein L15, mitochondrial; AltName:
           Full=YmL15; Flags: Precursor
 gi|2258171|gb|AAB64533.1| Mrpl15p: mitochondrial ribosomal protein YmL15 [Saccharomyces
           cerevisiae]
 gi|285813726|tpg|DAA09622.1| TPA: Mrpl15p [Saccharomyces cerevisiae S288c]
 gi|323303777|gb|EGA57561.1| Mrpl15p [Saccharomyces cerevisiae FostersB]
 gi|323307957|gb|EGA61214.1| Mrpl15p [Saccharomyces cerevisiae FostersO]
          Length = 253

 Score = 48.9 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 57/133 (42%), Gaps = 13/133 (9%)

Query: 21  SLLEKALTHSSISHSYQESYERLEFLGDRILG-LLISTLLFNHFDSAK--EGELSVRFNS 77
            L+ + LTH S +H  +   E+L  LG + L        L N   +     G+LS++F++
Sbjct: 85  ELILQCLTHKSFAHGSKPYNEKLNLLGAQFLKLQTCIHSLKNGSPAESCENGQLSLQFSN 144

Query: 78  --------LVSAETCSQVARELDLASFI--RVSSDLRKDVCSFMTSIQADVVESLIAALY 127
                   L S  T     +  +L  FI  ++   ++    +  T+I A V+ + I A+ 
Sbjct: 145 LGTKFAKELTSKNTACTFVKLHNLDPFIFWKMRDPIKDGHINGETTIFASVLNAFIGAIL 204

Query: 128 LDGGIEVAGTFVD 140
              G E A  F+ 
Sbjct: 205 STNGSEKAAKFIQ 217


>gi|241999660|ref|XP_002434473.1| double-stranded RNA-specific editase B2, putative [Ixodes
           scapularis]
 gi|215497803|gb|EEC07297.1| double-stranded RNA-specific editase B2, putative [Ixodes
           scapularis]
          Length = 683

 Score = 48.9 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 3/52 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
            K  L +    +     +Y V  + GP H P F V V++ G     G   SK
Sbjct: 63  PKNALMQL--NELKPGLKYSVESQEGPAHQPSFVVSVDVDGQT-FTGRGQSK 111


>gi|90077408|dbj|BAE88384.1| unnamed protein product [Macaca fascicularis]
          Length = 437

 Score = 48.9 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI-----SGLAPAQGMDCSKRA 210
           +AK  L ++   +  +  EYK T   GPDH+  F   + I          A+G   +K+ 
Sbjct: 180 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFARGHGSNKKL 237

Query: 211 AEQVAAAEVLKRE 223
           A Q  A  ++++ 
Sbjct: 238 AAQSCALSLVRQL 250



 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213
           D K  L  W   K  +TP Y++    G  +  +F   V++ G     GM  S  K+ A+ 
Sbjct: 3   DVKNFLYAWC-GKRKMTPSYEIRAV-GNKNRQKFMCEVQVEGYNY-TGMGNSTNKKDAQS 59

Query: 214 VAAAE 218
            AA +
Sbjct: 60  NAARD 64


>gi|115400141|ref|XP_001215659.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114191325|gb|EAU33025.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 264

 Score = 48.9 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 51/140 (36%), Gaps = 21/140 (15%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN------------------HFDSA 66
            A+TH S     +   +RL FLG RI+ L  S  L                       + 
Sbjct: 115 LAVTHKSFDQGRRGFNDRLAFLGKRIVQLQASLALVQSPGGSAASSVDAFGRRPFEHPAL 174

Query: 67  KE-GELS-VRFNSLVSAETCSQVARELDLASFIRVSS-DLRKDVCSFMTSIQADVVESLI 123
                LS      L+S    +++A++ +L   +R S    +    S    + A  + +++
Sbjct: 175 DGLPNLSPSTKELLLSKAKLAELAQKYELQKVLRWSPRKPQNLASSGFELVLAHTMYAVV 234

Query: 124 AALYLDGGIEVAGTFVDKYW 143
            A+ L+ G  VA     +  
Sbjct: 235 GAVSLEKGGHVANEVARERI 254


>gi|296231397|ref|XP_002761126.1| PREDICTED: tRNA-dihydrouridine synthase 2-like isoform 1
           [Callithrix jacchus]
 gi|296231399|ref|XP_002761127.1| PREDICTED: tRNA-dihydrouridine synthase 2-like isoform 2
           [Callithrix jacchus]
          Length = 493

 Score = 48.9 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVA 215
            K  L EW   +    P Y+   R     D  F+ +V ++     +   D SK+ AEQ A
Sbjct: 370 PKMCLLEWCRREKLPQPMYETVQR---PIDRLFSSIVTVAEQKYQSTLWDKSKKLAEQAA 426

Query: 216 AAEVLKREGI 225
           A   L+ +G+
Sbjct: 427 AIVCLRSQGL 436


>gi|126306309|ref|XP_001366536.1| PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box polypeptide 9
           [Monodelphis domestica]
          Length = 1256

 Score = 48.9 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213
           D K  L  W   K  +TP Y++    G  +  +F   V + G     GM  S  K+ A+ 
Sbjct: 3   DVKNFLYAWC-GKRKMTPTYEIRAV-GNKNRQKFMCEVRVEGFNY-TGMGNSTNKKDAQS 59

Query: 214 VAAAE 218
            AA +
Sbjct: 60  NAARD 64



 Score = 43.9 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210
           +AK  L ++   +  V  EYK T   GPDH+  F   + I      + +       +K+ 
Sbjct: 182 NAKARLNQFFQKE-KVQGEYKYTQV-GPDHNRSFIAEMTIYVKQLGRRIFAREHGSNKKL 239

Query: 211 AEQVAAAEVLKRE 223
           A Q  A  ++++ 
Sbjct: 240 AAQSCALSLVRQL 252


>gi|66911375|gb|AAH97173.1| Zgc:114114 [Danio rerio]
          Length = 155

 Score = 48.9 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 41/117 (35%), Gaps = 5/117 (4%)

Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR----DAKTELQEWAHA 167
             I      ++I AL    G   AG F+  +   + +    F      D    L E    
Sbjct: 9   DHILQGTFFAVIGALEQSSGPVRAGLFIRDFLVTQLIGKDLFDMWKVVDPMGLLVEELTR 68

Query: 168 KFGVTPEYKVTFRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           K    PE ++   +G     P + V +       AQG   +   AE+ AA   L++ 
Sbjct: 69  KGVALPEPRLIRSAGASTVLPLYFVGLYSDRKLLAQGPGETVLIAEEEAARVALRKL 125


>gi|332227763|ref|XP_003263057.1| PREDICTED: tRNA-dihydrouridine synthase 2 [Nomascus leucogenys]
          Length = 540

 Score = 48.9 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVA 215
            K  L EW   +    P Y+   R     D  F+ +V ++     +   D SK+ AEQ A
Sbjct: 417 PKMCLLEWCRREKLAQPVYETVQR---PLDRLFSSIVTVAEQKYQSTLWDKSKKLAEQAA 473

Query: 216 AAEVLKREGI 225
           A   L+ +G+
Sbjct: 474 AIVCLRSQGL 483


>gi|258571013|ref|XP_002544310.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237904580|gb|EEP78981.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 266

 Score = 48.9 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 22/145 (15%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH-------------------FDS 65
           +A+TH S     +   +RL +LG   + L  +  L  +                     +
Sbjct: 116 QAVTHKSFDQGRRGFNDRLAYLGKHAVALQATLALMQNPASHSQKLPEDPHNRTPFAHPA 175

Query: 66  AKEGEL--SVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQADVVESL 122
             E E+  S    +L   +  + +AR+ +L   +R +    R    S +  + A  + ++
Sbjct: 176 LDEIEVLSSPTAETLTEKKRIAALARQYELEGVLRWLPRMPRHFTQSGIDVVLAQTMYAI 235

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA 147
           + A+ L+ G  V+   V +   +  
Sbjct: 236 VGAVTLERGGAVSNRIVRERILKPL 260


>gi|82469834|gb|ABB77175.1| R2D2 [Drosophila melanogaster]
          Length = 311

 Score = 48.9 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            + A + LQE+        P Y       P  D  +   VE+  +  A G   SKR A+ 
Sbjct: 3   NKSAVSALQEFCARTQINLPTYSFI----PGEDGGYVCKVELLEIE-AIGNGRSKRDAKH 57

Query: 214 VAAAEVLKR 222
           +AA+ +L++
Sbjct: 58  LAASNILRK 66



 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS- 207
           +     RD   EL+++   +    P  ++  +SG    P F     ++ +        S 
Sbjct: 88  ELTNLNRDMVKELRDYCVRREMPLPSIEIVQQSGTPSAPEFVACCSVASIVR---YGKSD 144

Query: 208 -KRAAEQVAAAEVL 220
            K+ A Q AA E+L
Sbjct: 145 KKKDARQRAAIEML 158


>gi|82469820|gb|ABB77168.1| R2D2 [Drosophila teissieri]
          Length = 321

 Score = 48.9 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 5/69 (7%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            + A + LQE+      + P Y+     G D    +   V++  +  A G   SKR A+ 
Sbjct: 10  NKSAVSALQEFCAKTKNIPPSYEYID--GEDGG--YVCKVDLMEVE-AYGNGRSKRDAKH 64

Query: 214 VAAAEVLKR 222
           +AA  +L++
Sbjct: 65  LAAVNILRK 73



 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAA 217
           EL+++        P  ++  +SG  + P F     ++ +        S  K+ A Q AA 
Sbjct: 109 ELRDYCVRHEMPLPTIEIVQQSGTPNAPEFVACCSVASIVR---YGKSDKKKDARQRAAI 165

Query: 218 EVL 220
           E+L
Sbjct: 166 EML 168


>gi|157382880|gb|ABV48875.1| maleless [Drosophila melanogaster]
          Length = 1293

 Score = 48.9 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213
            D K+ L ++  AK  + P++    ++GP +  RF   V +        G   +K+ AE+
Sbjct: 1   MDIKSFLYQFC-AKSQIEPKFD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58

Query: 214 VAAAE 218
            A  +
Sbjct: 59  NACRD 63


>gi|157382874|gb|ABV48872.1| maleless [Drosophila melanogaster]
          Length = 1293

 Score = 48.9 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213
            D K+ L ++  AK  + P++    ++GP +  RF   V +        G   +K+ AE+
Sbjct: 1   MDIKSFLYQFC-AKSQIEPKFD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58

Query: 214 VAAAE 218
            A  +
Sbjct: 59  NACRD 63


>gi|157382872|gb|ABV48871.1| maleless [Drosophila melanogaster]
          Length = 1293

 Score = 48.9 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213
            D K+ L ++  AK  + P++    ++GP +  RF   V +        G   +K+ AE+
Sbjct: 1   MDIKSFLYQFC-AKSQIEPKFD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58

Query: 214 VAAAE 218
            A  +
Sbjct: 59  NACRD 63


>gi|157382868|gb|ABV48869.1| maleless [Drosophila melanogaster]
 gi|157382870|gb|ABV48870.1| maleless [Drosophila melanogaster]
 gi|157382876|gb|ABV48873.1| maleless [Drosophila melanogaster]
          Length = 1293

 Score = 48.9 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213
            D K+ L ++  AK  + P++    ++GP +  RF   V +        G   +K+ AE+
Sbjct: 1   MDIKSFLYQFC-AKSQIEPKFD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58

Query: 214 VAAAE 218
            A  +
Sbjct: 59  NACRD 63


>gi|157382866|gb|ABV48868.1| maleless [Drosophila melanogaster]
          Length = 1293

 Score = 48.9 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213
            D K+ L ++  AK  + P++    ++GP +  RF   V +        G   +K+ AE+
Sbjct: 1   MDIKSFLYQFC-AKSQIEPKFD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58

Query: 214 VAAAE 218
            A  +
Sbjct: 59  NACRD 63


>gi|157382862|gb|ABV48866.1| maleless [Drosophila melanogaster]
          Length = 1293

 Score = 48.9 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213
            D K+ L ++  AK  + P++    ++GP +  RF   V +        G   +K+ AE+
Sbjct: 1   MDIKSFLYQFC-AKSQIEPKFD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58

Query: 214 VAAAE 218
            A  +
Sbjct: 59  NACRD 63


>gi|157382860|gb|ABV48865.1| maleless [Drosophila melanogaster]
 gi|157382864|gb|ABV48867.1| maleless [Drosophila melanogaster]
 gi|157382878|gb|ABV48874.1| maleless [Drosophila melanogaster]
          Length = 1293

 Score = 48.9 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213
            D K+ L ++  AK  + P++    ++GP +  RF   V +        G   +K+ AE+
Sbjct: 1   MDIKSFLYQFC-AKSQIEPKFD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58

Query: 214 VAAAE 218
            A  +
Sbjct: 59  NACRD 63


>gi|157382858|gb|ABV48864.1| maleless [Drosophila melanogaster]
          Length = 1286

 Score = 48.9 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213
            D K+ L ++  AK  + P++    ++GP +  RF   V +        G   +K+ AE+
Sbjct: 1   MDIKSFLYQFC-AKSQIEPKFD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58

Query: 214 VAAAE 218
            A  +
Sbjct: 59  NACRD 63


>gi|157382856|gb|ABV48863.1| maleless [Drosophila melanogaster]
          Length = 1293

 Score = 48.9 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213
            D K+ L ++  AK  + P++    ++GP +  RF   V +        G   +K+ AE+
Sbjct: 1   MDIKSFLYQFC-AKSQIEPKFD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58

Query: 214 VAAAE 218
            A  +
Sbjct: 59  NACRD 63


>gi|157382854|gb|ABV48862.1| maleless [Drosophila melanogaster]
          Length = 1293

 Score = 48.9 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213
            D K+ L ++  AK  + P++    ++GP +  RF   V +        G   +K+ AE+
Sbjct: 1   MDIKSFLYQFC-AKSQIEPKFD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58

Query: 214 VAAAE 218
            A  +
Sbjct: 59  NACRD 63



 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 43/112 (38%), Gaps = 21/112 (18%)

Query: 129 DGGIEVAGTFVDKYWKQRALKSGKFR------------RDAKTELQEWAHAKFGVTPEYK 176
           DGG     + +D+  +QR +   +               +AK  L  +  A      +YK
Sbjct: 132 DGGYRY--SVIDRIQEQRDMNEAEAFDVNAAIHGNWTIENAKERLNIYKQANNIRD-DYK 188

Query: 177 VTFRSGPDHDPRFTVVVEI-----SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            T   GP+H   F   + I     +    A+    +K++A +  A  ++++ 
Sbjct: 189 YTPV-GPEHARSFLAELSIYVPALNRTVTARESGSNKKSASKSCALSLVRQL 239


>gi|157382852|gb|ABV48861.1| maleless [Drosophila melanogaster]
          Length = 1293

 Score = 48.9 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213
            D K+ L ++  AK  + P++    ++GP +  RF   V +        G   +K+ AE+
Sbjct: 1   MDIKSFLYQFC-AKSQIEPKFD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58

Query: 214 VAAAE 218
            A  +
Sbjct: 59  NACRD 63


>gi|157824892|gb|ABV82525.1| maleless [Drosophila melanogaster]
          Length = 1293

 Score = 48.9 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213
            D K+ L ++  AK  + P++    ++GP +  RF   V +        G   +K+ AE+
Sbjct: 1   MDIKSFLYQFC-AKSQIEPKFD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58

Query: 214 VAAAE 218
            A  +
Sbjct: 59  NACRD 63


>gi|157824890|gb|ABV82524.1| maleless [Drosophila melanogaster]
          Length = 1293

 Score = 48.9 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213
            D K+ L ++  AK  + P++    ++GP +  RF   V +        G   +K+ AE+
Sbjct: 1   MDIKSFLYQFC-AKSQIEPKFD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58

Query: 214 VAAAE 218
            A  +
Sbjct: 59  NACRD 63


>gi|157824888|gb|ABV82523.1| maleless [Drosophila melanogaster]
          Length = 1293

 Score = 48.9 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213
            D K+ L ++  AK  + P++    ++GP +  RF   V +        G   +K+ AE+
Sbjct: 1   MDIKSFLYQFC-AKSQIEPKFD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58

Query: 214 VAAAE 218
            A  +
Sbjct: 59  NACRD 63


>gi|157824886|gb|ABV82522.1| maleless [Drosophila melanogaster]
          Length = 1293

 Score = 48.9 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213
            D K+ L ++  AK  + P++    ++GP +  RF   V +        G   +K+ AE+
Sbjct: 1   MDIKSFLYQFC-AKSQIEPKFD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58

Query: 214 VAAAE 218
            A  +
Sbjct: 59  NACRD 63


>gi|157824884|gb|ABV82521.1| maleless [Drosophila melanogaster]
          Length = 1293

 Score = 48.9 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213
            D K+ L ++  AK  + P++    ++GP +  RF   V +        G   +K+ AE+
Sbjct: 1   MDIKSFLYQFC-AKSQIEPKFD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58

Query: 214 VAAAE 218
            A  +
Sbjct: 59  NACRD 63


>gi|157824882|gb|ABV82520.1| maleless [Drosophila melanogaster]
          Length = 1293

 Score = 48.9 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213
            D K+ L ++  AK  + P++    ++GP +  RF   V +        G   +K+ AE+
Sbjct: 1   MDIKSFLYQFC-AKSQIEPKFD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58

Query: 214 VAAAE 218
            A  +
Sbjct: 59  NACRD 63


>gi|157824878|gb|ABV82518.1| maleless [Drosophila melanogaster]
 gi|157824880|gb|ABV82519.1| maleless [Drosophila melanogaster]
          Length = 1293

 Score = 48.9 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213
            D K+ L ++  AK  + P++    ++GP +  RF   V +        G   +K+ AE+
Sbjct: 1   MDIKSFLYQFC-AKSQIEPKFD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58

Query: 214 VAAAE 218
            A  +
Sbjct: 59  NACRD 63


>gi|157824876|gb|ABV82517.1| maleless [Drosophila melanogaster]
          Length = 1293

 Score = 48.9 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213
            D K+ L ++  AK  + P++    ++GP +  RF   V +        G   +K+ AE+
Sbjct: 1   MDIKSFLYQFC-AKSQIEPKFD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58

Query: 214 VAAAE 218
            A  +
Sbjct: 59  NACRD 63


>gi|157906|gb|AAC41573.1| maleless protein [Drosophila melanogaster]
          Length = 1293

 Score = 48.9 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213
            D K+ L ++  AK  + P++    ++GP +  RF   V +        G   +K+ AE+
Sbjct: 1   MDIKSFLYQFC-AKSQIEPKFD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58

Query: 214 VAAAE 218
            A  +
Sbjct: 59  NACRD 63


>gi|62474635|ref|NP_476642.3| maleless, isoform B [Drosophila melanogaster]
 gi|61678431|gb|AAM68336.3| maleless, isoform B [Drosophila melanogaster]
          Length = 226

 Score = 48.9 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213
            D K+ L ++  AK  + P++    ++GP +  RF   V +        G   +K+ AE+
Sbjct: 1   MDIKSFLYQFC-AKSQIEPKFD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58

Query: 214 VAAAE 218
            A  +
Sbjct: 59  NACRD 63


>gi|17136342|ref|NP_476641.1| maleless, isoform A [Drosophila melanogaster]
 gi|76803804|sp|P24785|MLE_DROME RecName: Full=Dosage compensation regulator; AltName:
           Full=ATP-dependent RNA helicase mle; AltName:
           Full=Protein male-less; AltName: Full=Protein maleless;
           AltName: Full=Protein no action potential
 gi|7302201|gb|AAF57297.1| maleless, isoform A [Drosophila melanogaster]
          Length = 1293

 Score = 48.9 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213
            D K+ L ++  AK  + P++    ++GP +  RF   V +        G   +K+ AE+
Sbjct: 1   MDIKSFLYQFC-AKSQIEPKFD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58

Query: 214 VAAAE 218
            A  +
Sbjct: 59  NACRD 63


>gi|296231401|ref|XP_002761128.1| PREDICTED: tRNA-dihydrouridine synthase 2-like isoform 3
           [Callithrix jacchus]
          Length = 458

 Score = 48.9 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVA 215
            K  L EW   +    P Y+   R     D  F+ +V ++     +   D SK+ AEQ A
Sbjct: 335 PKMCLLEWCRREKLPQPMYETVQR---PIDRLFSSIVTVAEQKYQSTLWDKSKKLAEQAA 391

Query: 216 AAEVLKREGI 225
           A   L+ +G+
Sbjct: 392 AIVCLRSQGL 401


>gi|315048697|ref|XP_003173723.1| RNase III domain-containing protein [Arthroderma gypseum CBS
           118893]
 gi|311341690|gb|EFR00893.1| RNase III domain-containing protein [Arthroderma gypseum CBS
           118893]
          Length = 267

 Score = 48.9 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 22/145 (15%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF-----DSAK------------ 67
           +A+TH S     +   +RL + G +I+ L  S  L  +                      
Sbjct: 115 QAVTHKSFDQGRRGFNDRLAYFGKQIILLQSSLALVQNPAAYARPQKPDPFGRQPYESAA 174

Query: 68  ----EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQADVVESL 122
               E       + L   +  S +AR   +   +R    ++ D   S + +I    + ++
Sbjct: 175 LKGLEVLSQNTRSQLTRRKEMSALARHYGINEVMRWVPRMQHDLTESGVDTIYTHAMYAI 234

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA 147
           + A+ L+ G +VA   V     +  
Sbjct: 235 VGAIALEHGSKVANEIVRDRILKPL 259


>gi|148672022|gb|EDL03969.1| TAR (HIV) RNA binding protein 2, isoform CRA_c [Mus musculus]
          Length = 140

 Score = 48.9 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG-LAPAQ-GMDCS 207
           E    K    PEY VT  SGP H   FT+   +   +     G   S
Sbjct: 36  ELVVQKGWRLPEYMVTQESGPAHRKEFTMTCRVERFIEIGNWGKGGS 82


>gi|17533821|ref|NP_494501.1| hypothetical protein F39E9.7 [Caenorhabditis elegans]
          Length = 136

 Score = 48.9 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 1/69 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +   +L E+A   +   P ++            F +          +G   SK  A++ A
Sbjct: 34  NPVAQLNEYAQKFYKKYPTFEFVKEQAVGKHRVFIIQATFEDKTL-EGRGPSKMIAKRAA 92

Query: 216 AAEVLKREG 224
           A  +L+  G
Sbjct: 93  AEAILESIG 101


>gi|8923374|ref|NP_060273.1| tRNA-dihydrouridine synthase 2-like [Homo sapiens]
 gi|73620832|sp|Q9NX74|DUS2L_HUMAN RecName: Full=tRNA-dihydrouridine synthase 2-like; Short=hDUS2;
           AltName: Full=Up-regulated in lung cancer protein 8;
           Short=URLC8
 gi|7020473|dbj|BAA91143.1| unnamed protein product [Homo sapiens]
 gi|16306804|gb|AAH06527.1| Dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae) [Homo
           sapiens]
 gi|71006842|dbj|BAE07219.1| up-regulated in lung cancer 8 [Homo sapiens]
 gi|119603613|gb|EAW83207.1| dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae),
           isoform CRA_a [Homo sapiens]
 gi|119603614|gb|EAW83208.1| dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae),
           isoform CRA_a [Homo sapiens]
 gi|119603615|gb|EAW83209.1| dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae),
           isoform CRA_a [Homo sapiens]
 gi|158254588|dbj|BAF83267.1| unnamed protein product [Homo sapiens]
 gi|312152458|gb|ADQ32741.1| dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae)
           [synthetic construct]
          Length = 493

 Score = 48.9 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVA 215
            K  L EW   +    P Y+   R     D  F+ +V ++     +   D SK+ AEQ A
Sbjct: 370 PKMCLLEWCRREKLAQPVYETVQR---PLDRLFSSIVTVAEQKYQSTLWDKSKKLAEQAA 426

Query: 216 AAEVLKREGI 225
           A   L+ +G+
Sbjct: 427 AIVCLRSQGL 436


>gi|198414898|ref|XP_002128212.1| PREDICTED: similar to LOC495438 protein [Ciona intestinalis]
          Length = 802

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +Y +  ++G     RFT  V   G    +G   +K+ A+  AA   L R
Sbjct: 189 KYDLIEQTGNGTSTRFTFQVVFRGEIY-KGSGVNKKMAKHEAAKAALSR 236



 Score = 40.4 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 5/67 (7%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           ++    L E      G   +Y    R G      FT+ V ++G A  QG   +K+ A+  
Sbjct: 319 KNPVQLLNEMV----GPGIQYNCVDRVGDQKSHYFTMEVCLNGRAY-QGQGKNKKLAKAG 373

Query: 215 AAAEVLK 221
            A  +L+
Sbjct: 374 VAMRILR 380


>gi|194862942|ref|XP_001970198.1| GG10497 [Drosophila erecta]
 gi|190662065|gb|EDV59257.1| GG10497 [Drosophila erecta]
          Length = 322

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 5/75 (6%)

Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           L      + A + LQE+      + P Y      G D    +   V++  L  A G   S
Sbjct: 4   LAEPIDNKSAVSALQEFCAKTKNIPPTYNFID--GEDGG--YVCKVDLMEL-MAYGNGRS 58

Query: 208 KRAAEQVAAAEVLKR 222
           KR A+ +AA  +L++
Sbjct: 59  KRDAKHLAAVNILRK 73



 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAA 217
            L+++        P  +V  +SG  + P F     ++ +        S  K+ A Q AA 
Sbjct: 110 ALRDYCVRHEMPLPSIEVVQQSGSPNAPEFVACCSVASIVR---YGKSDKKKDARQRAAI 166

Query: 218 EVL 220
           E+L
Sbjct: 167 EML 169


>gi|158298855|ref|XP_001238071.2| AGAP009887-PA [Anopheles gambiae str. PEST]
 gi|157014087|gb|EAU76055.2| AGAP009887-PA [Anopheles gambiae str. PEST]
          Length = 324

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            +    PE       GP H P F     I  +   +G   +K+ A+Q+A  E++K
Sbjct: 121 QRNFPLPEIVQVRSYGPSHAPVFEFECRIREIVR-RGSHSTKKGAKQIACQEMIK 174



 Score = 44.7 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 8/72 (11%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHD---PRFTVVVEISGLAPAQGMDCSKRAAEQ 213
             T LQE         P Y+        H      F+ +V   G   A G+  SK+ A+ 
Sbjct: 12  PITMLQEMCFKVKSTLPIYQFLGEECSPHSVNVKLFSYMVTALGKQ-ATGVGRSKQEAKH 70

Query: 214 VAA----AEVLK 221
            +A       L+
Sbjct: 71  ESAWQLIRLALE 82


>gi|90083447|dbj|BAE90806.1| unnamed protein product [Macaca fascicularis]
          Length = 493

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVA 215
            K  L EW   +    P Y+   R     D  F+ +V ++     +   D SK+ AEQ A
Sbjct: 370 PKMCLLEWCRREKLAQPVYETVQR---PLDRLFSSIVTVAEQKYQSTLWDKSKKLAEQAA 426

Query: 216 AAEVLKREGI 225
           A   L+ +G+
Sbjct: 427 AIVCLRSQGL 436


>gi|221236967|gb|ACM16036.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Aotus
           trivirgatus]
          Length = 549

 Score = 48.5 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 6/58 (10%)

Query: 164 WAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           +A      T  Y+   +  +GP     F    ++       G   +K+ A+Q+AA   
Sbjct: 108 FAQKNRL-TVNYEQCASGVNGPAG---FHYKCKVGQKEYGIGTGSTKQEAKQMAAKLA 161



 Score = 42.0 bits (98), Expect = 0.056,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205
           EL ++   +  V   Y+    SGP HD RFT  V I G    +   
Sbjct: 13  ELNKYRQKQGVVL-RYEELPNSGPPHDRRFTFQVIIDGREFPEAEG 57


>gi|114663254|ref|XP_001166802.1| PREDICTED: dihydrouridine synthase 2-like, SMM1 homolog isoform 5
           [Pan troglodytes]
          Length = 477

 Score = 48.5 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVA 215
            K  L EW   +    P Y+   R     D  F+ +V ++     +   D SK+ AEQ A
Sbjct: 354 PKMCLLEWCRREKLAQPVYETVQR---PLDRLFSSIVTVAEQKYQSTLWDKSKKLAEQAA 410

Query: 216 AAEVLKREGI 225
           A   L+ +G+
Sbjct: 411 AIVCLRSQGL 420


>gi|114663240|ref|XP_001166638.1| PREDICTED: dihydrouridine synthase 2-like, SMM1 homolog isoform 1
           [Pan troglodytes]
 gi|114663242|ref|XP_001166736.1| PREDICTED: dihydrouridine synthase 2-like, SMM1 homolog isoform 3
           [Pan troglodytes]
 gi|114663244|ref|XP_001166768.1| PREDICTED: tRNA-dihydrouridine synthase 2-like isoform 4 [Pan
           troglodytes]
 gi|114663246|ref|XP_001166835.1| PREDICTED: dihydrouridine synthase 2-like, SMM1 homolog isoform 6
           [Pan troglodytes]
 gi|114663248|ref|XP_001166866.1| PREDICTED: dihydrouridine synthase 2-like, SMM1 homolog isoform 7
           [Pan troglodytes]
 gi|114663250|ref|XP_001166896.1| PREDICTED: dihydrouridine synthase 2-like, SMM1 homolog isoform 8
           [Pan troglodytes]
 gi|114663252|ref|XP_001166928.1| PREDICTED: dihydrouridine synthase 2-like, SMM1 homolog isoform 9
           [Pan troglodytes]
          Length = 493

 Score = 48.5 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVA 215
            K  L EW   +    P Y+   R     D  F+ +V ++     +   D SK+ AEQ A
Sbjct: 370 PKMCLLEWCRREKLAQPVYETVQR---PLDRLFSSIVTVAEQKYQSTLWDKSKKLAEQAA 426

Query: 216 AAEVLKREGI 225
           A   L+ +G+
Sbjct: 427 AIVCLRSQGL 436


>gi|198423925|ref|XP_002127604.1| PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box polypeptide 9
           [Ciona intestinalis]
          Length = 1243

 Score = 48.5 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-----MDCSKRA 210
           ++K  L ++      + PEYK   + GPDH+  F   + +      +         +K+ 
Sbjct: 189 NSKGRLHQFFQQN-KINPEYK-YSQVGPDHNRSFISELVVYIKKLGRSLHAREHGSNKKN 246

Query: 211 AEQVAAAEVLKRE 223
           A Q  A  ++++ 
Sbjct: 247 ASQSCALSIIRQL 259



 Score = 45.1 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAA 216
           KT L  W   K  +TP Y     SG    P+F   V + G+     G   +K+ A+  AA
Sbjct: 5   KTFLYAWL-GKQKMTPSYD-IQPSGSKARPKFMCEVRVDGIPYVGIGNSTNKKDAQANAA 62

Query: 217 AE 218
            +
Sbjct: 63  YD 64


>gi|284504268|ref|YP_003406983.1| ribonuclease III [Marseillevirus]
 gi|282935706|gb|ADB04021.1| ribonuclease III [Marseillevirus]
          Length = 312

 Score = 48.5 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 35/97 (36%), Gaps = 1/97 (1%)

Query: 18  ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA-KEGELSVRFN 76
            N +    A TH ++  + + +YE  E +GD ++   I   +            L+   +
Sbjct: 29  KNLAKFRVAFTHKTVQTNDRNNYELYELVGDSLVNAAILGFIRTKRPEITDVETLTRIKH 88

Query: 77  SLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS 113
            + S    S +A +      + V  +  K +   +  
Sbjct: 89  YIQSRSFLSLLAFQNGYFEHVTVGEEFAKTILEGVEK 125


>gi|194383804|dbj|BAG59260.1| unnamed protein product [Homo sapiens]
          Length = 458

 Score = 48.5 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVA 215
            K  L EW   +    P Y+   R     D  F+ +V ++     +   D SK+ AEQ A
Sbjct: 335 PKMCLLEWCRREKLAQPVYETVQR---PLDRLFSSIVTVAEQKYQSTLWDKSKKLAEQAA 391

Query: 216 AAEVLKREGI 225
           A   L+ +G+
Sbjct: 392 AIVCLRSQGL 401


>gi|109128993|ref|XP_001097732.1| PREDICTED: tRNA-dihydrouridine synthase 2-like [Macaca mulatta]
          Length = 492

 Score = 48.5 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVA 215
            K  L EW   +    P Y+   R     D  F+ +V ++     +   D SK+ AEQ A
Sbjct: 369 PKMCLLEWCRREKLAQPVYETVQR---PLDRLFSSIVTVAEQKYQSTLWDKSKKLAEQAA 425

Query: 216 AAEVLKREGI 225
           A   L+ +G+
Sbjct: 426 AIVCLRSQGL 435


>gi|51105080|gb|AAT97100.1| putative double strand RNA binding protein [Lymnaea stagnalis]
          Length = 141

 Score = 48.5 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 14/36 (38%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
           +   ELQE+   K    P Y+     GP H   F  
Sbjct: 104 NPIGELQEFTQKKLLKPPIYEFVTEQGPPHAREFIC 139



 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
             + LQE+A  K  +TP+Y +    G  H+P F + V +   A A 
Sbjct: 9   PISYLQEYA-TKHAITPQYDLIANEGAVHEPTFIMRVTVGDNAVAT 53


>gi|19113607|ref|NP_596815.1| mitochondrial ribosomal protein subunit L15 [Schizosaccharomyces
           pombe 972h-]
 gi|74626357|sp|Q9Y7Z7|RM15_SCHPO RecName: Full=60S ribosomal protein L15, mitochondrial; Flags:
           Precursor
 gi|5579046|emb|CAB51333.1| mitochondrial ribosomal protein subunit L15 [Schizosaccharomyces
           pombe]
          Length = 210

 Score = 48.5 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 48/127 (37%), Gaps = 4/127 (3%)

Query: 18  ANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
           +++SL E+ +TH S  H  +   E    +G+ ++ + +        + +          +
Sbjct: 66  SDKSLREQIVTHKSYKHGLKRYNEPFVSVGNAVIDVCLLNHYLESGNFSTIPSYKDL-VN 124

Query: 78  LVSAETCSQVARELDLA---SFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEV 134
           L S    ++VA++ +       I           S    I + +V  L+A +Y   G   
Sbjct: 125 LRSPARLAEVAKKWNPETATQCILPLKGPNSPSSSSFEKIYSSIVSGLVAVVYFQKGGVE 184

Query: 135 AGTFVDK 141
           A  F  K
Sbjct: 185 AMNFCKK 191


>gi|326468739|gb|EGD92748.1| hypothetical protein TESG_00316 [Trichophyton tonsurans CBS 112818]
 gi|326481349|gb|EGE05359.1| RNase III domain-containing protein [Trichophyton equinum CBS
           127.97]
          Length = 267

 Score = 48.5 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 54/146 (36%), Gaps = 24/146 (16%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL------------- 71
           +A+TH S     +   +RL + G +I+ L  S  L  +  +A    L             
Sbjct: 115 QAVTHKSFDQGRRGFNDRLAYFGKQIILLQASLALVQN-PTAYAQRLKPDPFERLPYDSA 173

Query: 72  ---------SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC-SFMTSIQADVVES 121
                        + L   +  S +AR   +   +R    ++ D+  S + +I    + +
Sbjct: 174 ALKGLEVLSQNTRSQLTRKKEMSALARHYGVNEVMRWVPRMQHDLTESGVDTIYTHAMYA 233

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA 147
           +I A+ L+ G +VA   V     +  
Sbjct: 234 IIGAIALENGSKVANEIVRDRILKPL 259


>gi|10120841|pdb|1EKZ|A Chain A, Nmr Structure Of The Complex Between The Third Dsrbd From
           Drosophila Staufen And A Rna Hairpin
          Length = 76

 Score = 48.5 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           K  +T  +KV    GP H   F     + G    +G    K+ +++ AA ++L
Sbjct: 19  KRNMTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKVSKKRAAEKML 70


>gi|194765667|ref|XP_001964948.1| GF21798 [Drosophila ananassae]
 gi|190617558|gb|EDV33082.1| GF21798 [Drosophila ananassae]
          Length = 316

 Score = 48.5 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            + A + LQE+        P Y+     G D    +   V +  +  A G   SKR A+ 
Sbjct: 3   NKSAVSSLQEFCAKTKNCPPTYEFID--GEDGG--YVCKVTLLEID-AYGNGRSKRDAKH 57

Query: 214 VAAAEVLKR 222
           +AA+ ++++
Sbjct: 58  LAASNIMRK 66



 Score = 43.1 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAA 217
           EL+++        P  ++  + G  + P F    +++ L        S  K+ A Q AA 
Sbjct: 105 ELRDFCVRHEMPLPTIEIVQQCGTPNAPEFVACCKVASLTR---YGKSDKKKDARQRAAI 161

Query: 218 EVL 220
           E+L
Sbjct: 162 EML 164


>gi|253723115|pdb|1STU|A Chain A, Double Stranded Rna Binding Domain
          Length = 68

 Score = 48.5 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           K  +T  +KV    GP H   F     + G    +G    K+ +++ AA ++L
Sbjct: 11  KRNMTVHFKVLREEGPAHMKNFITACIV-GSIVTEGEGNGKKVSKKRAAEKML 62


>gi|156373220|ref|XP_001629431.1| predicted protein [Nematostella vectensis]
 gi|156216431|gb|EDO37368.1| predicted protein [Nematostella vectensis]
          Length = 221

 Score = 48.5 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 6/65 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + L E A  K   T  ++    +       FT  V I     A G   +K+ A++ A
Sbjct: 98  NPISILTESAQ-KSKKTINFQELQST-----NLFTCAVIIQDKLVATGEASNKKDAKRNA 151

Query: 216 AAEVL 220
           A   L
Sbjct: 152 AENAL 156


>gi|158296133|ref|XP_316626.4| AGAP006599-PA [Anopheles gambiae str. PEST]
 gi|157016367|gb|EAA11305.4| AGAP006599-PA [Anopheles gambiae str. PEST]
          Length = 1309

 Score = 48.5 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 3/65 (4%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQ 213
            D K+ L  W        P + V    GP H  RF   V I G+     G   +K+ +E+
Sbjct: 1   MDMKSFLLCWCQKNV-CEPAFDV-RPLGPKHRQRFLCEVRIPGINYIGVGNSTNKKDSEK 58

Query: 214 VAAAE 218
            A+ +
Sbjct: 59  NASRD 63



 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV--VEISGL---APAQGMDCSKRA 210
           +AK++L +W      +  E+K T   GPDH   F     V +  L      +    +K++
Sbjct: 161 NAKSKLNQWLQ-HHKIKAEFKYTSI-GPDHAKSFIAEMIVYVRELNRTITGRESGSNKQS 218

Query: 211 AEQVAAAEVLKRE 223
           A +  A  ++++ 
Sbjct: 219 ASKSCALSLIRQL 231


>gi|330804651|ref|XP_003290306.1| hypothetical protein DICPUDRAFT_154803 [Dictyostelium purpureum]
 gi|325079593|gb|EGC33186.1| hypothetical protein DICPUDRAFT_154803 [Dictyostelium purpureum]
          Length = 441

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 13/138 (9%)

Query: 14  GYAFANRSLLEKALTHSSISHSYQESYERL---EFLGD--RILGLLISTLLFNHFDSAKE 68
           G  F N  L  KAL   S      ++       +F  D  RI  L++S  L+  F +   
Sbjct: 114 GLKFNNSELQSKAL---SPEIKITQNQHIHIISDFFNDGARIFPLVVSKYLYKRFPNLTT 170

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM-TSIQADVVESLIAALY 127
           G      +  +S    S V + L+L  +++V     + + S+    +      S I A+Y
Sbjct: 171 GYALAFNSFFLSRVFISSVFQYLNLQDYLKV----DQTISSYKYEKLYYTTFLSFIGAVY 226

Query: 128 LDGGIEVAGTFVDKYWKQ 145
            D G       +   + +
Sbjct: 227 QDQGENAIEEKIVPLFIE 244


>gi|311264943|ref|XP_003130412.1| PREDICTED: ATP-dependent RNA helicase A-like [Sus scrofa]
          Length = 160

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213
           D K  L  W   K  +TP Y++    G  +  +F   V + G     GM  S  K+ A+ 
Sbjct: 3   DVKNFLYAWC-GKRKMTPSYEIRAV-GNKNRQKFMCEVRVEGYNY-TGMGNSTNKKDAQS 59

Query: 214 VAAAE 218
            AA +
Sbjct: 60  NAARD 64


>gi|296478925|gb|DAA21040.1| ATP-dependent RNA helicase A [Bos taurus]
          Length = 1287

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213
           D K  L  W   K  +TP Y++    G  +  +F   V + G     GM  S  K+ A+ 
Sbjct: 3   DVKNFLYAWC-GKRKMTPSYEIRAV-GNKNRQKFMCEVRVEGYNY-TGMGNSTNKKDAQS 59

Query: 214 VAAAE 218
            AA +
Sbjct: 60  NAARD 64



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210
           +AK  L ++   +  +  EYK T   GPDH+  F   + I      + +       +K+ 
Sbjct: 177 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQIGRRIFAREHGSNKKL 234

Query: 211 AEQVAAAEVLKRE 223
           A Q  A  ++++ 
Sbjct: 235 AAQSCALSLVRQL 247


>gi|27806665|ref|NP_776461.1| ATP-dependent RNA helicase A [Bos taurus]
 gi|2500541|sp|Q28141|DHX9_BOVIN RecName: Full=ATP-dependent RNA helicase A; AltName: Full=DEAH box
           protein 9; AltName: Full=Nuclear DNA helicase II;
           Short=NDH II
 gi|577739|emb|CAA58036.1| nuclear DNA helicase II [Bos taurus]
          Length = 1287

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213
           D K  L  W   K  +TP Y++    G  +  +F   V + G     GM  S  K+ A+ 
Sbjct: 3   DVKNFLYAWC-GKRKMTPSYEIRAV-GNKNRQKFMCEVRVEGYNY-TGMGNSTNKKDAQS 59

Query: 214 VAAAE 218
            AA +
Sbjct: 60  NAARD 64



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210
           +AK  L ++   +  +  EYK T   GPDH+  F   + I      + +       +K+ 
Sbjct: 177 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQIGRRIFAREHGSNKKL 234

Query: 211 AEQVAAAEVLKRE 223
           A Q  A  ++++ 
Sbjct: 235 AAQSCALSLVRQL 247


>gi|288804124|gb|ADC53790.1| dsRNA-binding interferon resistance protein [Pseudocowpox virus]
          Length = 182

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 1/65 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + + E+         E+  T   G DH P FT  + +SG   A     SK+ A   A
Sbjct: 108 NPVSAVNEFCMITHRHL-EFCETRSGGQDHCPNFTCTIMVSGKVIATADGTSKKMARHAA 166

Query: 216 AAEVL 220
               L
Sbjct: 167 CVAAL 171


>gi|254569420|ref|XP_002491820.1| hypothetical protein [Pichia pastoris GS115]
 gi|238031617|emb|CAY69540.1| Hypothetical protein PAS_chr2-2_0365 [Pichia pastoris GS115]
 gi|328351680|emb|CCA38079.1| hypothetical protein PP7435_Chr2-0386 [Pichia pastoris CBS 7435]
          Length = 349

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 72/214 (33%), Gaps = 26/214 (12%)

Query: 16  AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF 75
            F N++LL K L     + S  ++ + L +LG +    L+S  L     S     L    
Sbjct: 145 TFENKALLHKKLV---SNDSSVQTNDSLVYLGSKFCHCLVSFKLNELHPSLDAELLDCAV 201

Query: 76  NSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG---- 131
             ++        A  L+    +  S    K    F   + A+   + +AAL ++ G    
Sbjct: 202 QEVLHFNNVHIWALRLNFRELLE-SKFPAKQ---FRPKVMAECFMAYVAALKIETGSDYN 257

Query: 132 -IEVAGTFVDKYWKQRALK---SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
            + +   ++ K   ++  K        R AK  L      K      Y   F     +  
Sbjct: 258 LLTLLTQWILKLASEKIYKLRVENLVDRSAKDSL-----HKLMGPMRYATAF-----NGS 307

Query: 188 RFTVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVL 220
           +F      + G     G   +K  +E  +A   L
Sbjct: 308 KFISKCLNNKGEVLGHGSGYNKTDSELRSAMHAL 341


>gi|307383|gb|AAB48855.1| RNA helicase A [Homo sapiens]
          Length = 1279

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213
           D K  L  W   K  +TP Y++    G  +  +F   V++ G     GM  S  K+ A+ 
Sbjct: 3   DVKNFLYAWC-GKRKMTPTYEIRAV-GNKNRQKFMCEVQVEGYNY-TGMGNSTNKKDAQS 59

Query: 214 VAAAE 218
            AA +
Sbjct: 60  NAARD 64



 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210
           +AK  L ++   +  +  EYK T   GPDH+  F   + I      + +       +K+ 
Sbjct: 180 NAKARLIQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 237

Query: 211 AEQVAAAEVLKRE 223
           A Q  A  ++++ 
Sbjct: 238 AAQSCALSLVRQL 250


>gi|301776997|ref|XP_002923919.1| PREDICTED: ATP-dependent RNA helicase A-like [Ailuropoda
           melanoleuca]
          Length = 1276

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQV 214
           D K  L  W   K  +TP Y++    G  +  +F   V + G      G   +K+ A+  
Sbjct: 3   DVKNFLYAWC-GKRKMTPSYEIRAV-GNKNRQKFMCEVRVEGYNYIGMGNSTNKKDAQSN 60

Query: 215 AAAE 218
           AA +
Sbjct: 61  AARD 64



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210
           +AK  L ++   +  +  EYK T   GPDH+  F   + I      + +       +K+ 
Sbjct: 181 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 238

Query: 211 AEQVAAAEVLKRE 223
           A Q  A  ++++ 
Sbjct: 239 AAQSCALSLVRQL 251


>gi|281337823|gb|EFB13407.1| hypothetical protein PANDA_013142 [Ailuropoda melanoleuca]
          Length = 1155

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQV 214
           D K  L  W   K  +TP Y++    G  +  +F   V + G      G   +K+ A+  
Sbjct: 3   DVKNFLYAWC-GKRKMTPSYEIRAV-GNKNRQKFMCEVRVEGYNYIGMGNSTNKKDAQSN 60

Query: 215 AAAE 218
           AA +
Sbjct: 61  AARD 64



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210
           +AK  L ++   +  +  EYK T   GPDH+  F   + I      + +       +K+ 
Sbjct: 181 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 238

Query: 211 AEQVAAAEVLKRE 223
           A Q  A  ++++ 
Sbjct: 239 AAQSCALSLVRQL 251


>gi|73960433|ref|XP_859097.1| PREDICTED: similar to ATP-dependent RNA helicase A (Nuclear DNA
           helicase II) (NDH II) (DEAH-box protein 9) isoform 3
           [Canis familiaris]
          Length = 862

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQV 214
           D K  L  W   K  +TP Y++    G  +  +F   V + G      G   +K+ A+  
Sbjct: 3   DVKNFLYAWC-GKRKMTPSYEIRAV-GNKNRQKFMCEVRVEGYNYIGMGNSTNKKDAQSN 60

Query: 215 AAAE 218
           AA +
Sbjct: 61  AARD 64



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210
           +AK  L ++   +  +  EYK T   GPDH+  F   + I      + +       +K+ 
Sbjct: 181 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 238

Query: 211 AEQVAAAEVLKRE 223
           A Q  A  ++++ 
Sbjct: 239 AAQSCALSLVRQL 251


>gi|73960441|ref|XP_859257.1| PREDICTED: similar to ATP-dependent RNA helicase A (Nuclear DNA
           helicase II) (NDH II) (DEAH-box protein 9) isoform 6
           [Canis familiaris]
          Length = 1284

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQV 214
           D K  L  W   K  +TP Y++    G  +  +F   V + G      G   +K+ A+  
Sbjct: 3   DVKNFLYAWC-GKRKMTPSYEIRAV-GNKNRQKFMCEVRVEGYNYIGMGNSTNKKDAQSN 60

Query: 215 AAAE 218
           AA +
Sbjct: 61  AARD 64



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210
           +AK  L ++   +  +  EYK T   GPDH+  F   + I      + +       +K+ 
Sbjct: 181 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 238

Query: 211 AEQVAAAEVLKRE 223
           A Q  A  ++++ 
Sbjct: 239 AAQSCALSLVRQL 251


>gi|73960443|ref|XP_859296.1| PREDICTED: similar to ATP-dependent RNA helicase A (Nuclear DNA
           helicase II) (NDH II) (DEAH-box protein 9) isoform 7
           [Canis familiaris]
          Length = 1284

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQV 214
           D K  L  W   K  +TP Y++    G  +  +F   V + G      G   +K+ A+  
Sbjct: 3   DVKNFLYAWC-GKRKMTPSYEIRAV-GNKNRQKFMCEVRVEGYNYIGMGNSTNKKDAQSN 60

Query: 215 AAAE 218
           AA +
Sbjct: 61  AARD 64



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210
           +AK  L ++   +  +  EYK T   GPDH+  F   + I      + +       +K+ 
Sbjct: 181 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 238

Query: 211 AEQVAAAEVLKRE 223
           A Q  A  ++++ 
Sbjct: 239 AAQSCALSLVRQL 251


>gi|73960435|ref|XP_849581.1| PREDICTED: similar to ATP-dependent RNA helicase A (Nuclear DNA
           helicase II) (NDH II) (DEAH-box protein 9) isoform 2
           [Canis familiaris]
 gi|73960445|ref|XP_537154.2| PREDICTED: similar to ATP-dependent RNA helicase A (Nuclear DNA
           helicase II) (NDH II) (DEAH-box protein 9) isoform 1
           [Canis familiaris]
          Length = 1276

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQV 214
           D K  L  W   K  +TP Y++    G  +  +F   V + G      G   +K+ A+  
Sbjct: 3   DVKNFLYAWC-GKRKMTPSYEIRAV-GNKNRQKFMCEVRVEGYNYIGMGNSTNKKDAQSN 60

Query: 215 AAAE 218
           AA +
Sbjct: 61  AARD 64



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210
           +AK  L ++   +  +  EYK T   GPDH+  F   + I      + +       +K+ 
Sbjct: 181 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 238

Query: 211 AEQVAAAEVLKRE 223
           A Q  A  ++++ 
Sbjct: 239 AAQSCALSLVRQL 251


>gi|114663256|ref|XP_001166706.1| PREDICTED: dihydrouridine synthase 2-like, SMM1 homolog isoform 2
           [Pan troglodytes]
          Length = 406

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVA 215
            K  L EW   +    P Y+   R     D  F+ +V ++     +   D SK+ AEQ A
Sbjct: 283 PKMCLLEWCRREKLAQPVYETVQR---PLDRLFSSIVTVAEQKYQSTLWDKSKKLAEQAA 339

Query: 216 AAEVLKREGI 225
           A   L+ +G+
Sbjct: 340 AIVCLRSQGL 349


>gi|218191244|gb|EEC73671.1| hypothetical protein OsI_08218 [Oryza sativa Indica Group]
          Length = 937

 Score = 48.1 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 19/36 (52%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +F++ V I G    +G+  +++ A+  AA   L+  
Sbjct: 724 QFSIEVWIVGEKVGEGIGRTRKEAQCQAAEISLRNL 759


>gi|115447513|ref|NP_001047536.1| Os02g0639000 [Oryza sativa Japonica Group]
 gi|49388226|dbj|BAD25346.1| double-stranded RNA-binding domain (DsRBD)-containing protein-like
           [Oryza sativa Japonica Group]
 gi|49388720|dbj|BAD25901.1| double-stranded RNA-binding domain (DsRBD)-containing protein-like
           [Oryza sativa Japonica Group]
 gi|113537067|dbj|BAF09450.1| Os02g0639000 [Oryza sativa Japonica Group]
 gi|215695163|dbj|BAG90354.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222623318|gb|EEE57450.1| hypothetical protein OsJ_07667 [Oryza sativa Japonica Group]
          Length = 940

 Score = 48.1 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 19/36 (52%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +F++ V I G    +G+  +++ A+  AA   L+  
Sbjct: 727 QFSIEVWIVGEKVGEGIGRTRKEAQCQAAEISLRNL 762


>gi|150456419|ref|NP_031868.2| ATP-dependent RNA helicase A [Mus musculus]
          Length = 1383

 Score = 48.1 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213
           D K  L  W   K  +TP Y++    G  +  +F   V + G   A GM  S  K+ A+ 
Sbjct: 3   DIKNFLYAWC-GKRKMTPAYEIRAV-GNKNRQKFMCEVRVEGFNYA-GMGNSTNKKDAQS 59

Query: 214 VAAAE 218
            AA +
Sbjct: 60  NAARD 64



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210
           +AK  L ++   +  +  EYK T   GPDH+  F   + I      + +       +K+ 
Sbjct: 182 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 239

Query: 211 AEQVAAAEVLKRE 223
           A Q  A  ++++ 
Sbjct: 240 AAQSCALSLVRQL 252


>gi|157821633|ref|NP_001100654.1| ATP-dependent RNA helicase A [Rattus norvegicus]
 gi|149058390|gb|EDM09547.1| DEAH (Asp-Glu-Ala-His) box polypeptide 9 (predicted) [Rattus
           norvegicus]
          Length = 1174

 Score = 48.1 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213
           D K  L  W   K  +TP Y++    G  +  +F   V + G   A GM  S  K+ A+ 
Sbjct: 3   DIKNFLYAWC-GKRKMTPAYEIRAV-GNKNRQKFMCEVRVEGFNYA-GMGNSTNKKDAQS 59

Query: 214 VAAAE 218
            AA +
Sbjct: 60  NAARD 64



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210
           +AK  L ++   +  +  EYK T   GPDH+  F   + I      + +       +K+ 
Sbjct: 183 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 240

Query: 211 AEQVAAAEVLKRE 223
           A Q  A  ++++ 
Sbjct: 241 AAQSCALSLVRQL 253


>gi|148707490|gb|EDL39437.1| DEAH (Asp-Glu-Ala-His) box polypeptide 9, isoform CRA_b [Mus
           musculus]
          Length = 1384

 Score = 48.1 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213
           D K  L  W   K  +TP Y++    G  +  +F   V + G   A GM  S  K+ A+ 
Sbjct: 4   DIKNFLYAWC-GKRKMTPAYEIRAV-GNKNRQKFMCEVRVEGFNYA-GMGNSTNKKDAQS 60

Query: 214 VAAAE 218
            AA +
Sbjct: 61  NAARD 65



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210
           +AK  L ++   +  +  EYK T   GPDH+  F   + I      + +       +K+ 
Sbjct: 183 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 240

Query: 211 AEQVAAAEVLKRE 223
           A Q  A  ++++ 
Sbjct: 241 AAQSCALSLVRQL 253


>gi|148707489|gb|EDL39436.1| DEAH (Asp-Glu-Ala-His) box polypeptide 9, isoform CRA_a [Mus
           musculus]
          Length = 1174

 Score = 48.1 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213
           D K  L  W   K  +TP Y++    G  +  +F   V + G   A GM  S  K+ A+ 
Sbjct: 3   DIKNFLYAWC-GKRKMTPAYEIRAV-GNKNRQKFMCEVRVEGFNYA-GMGNSTNKKDAQS 59

Query: 214 VAAAE 218
            AA +
Sbjct: 60  NAARD 64



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210
           +AK  L ++   +  +  EYK T   GPDH+  F   + I      + +       +K+ 
Sbjct: 183 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 240

Query: 211 AEQVAAAEVLKRE 223
           A Q  A  ++++ 
Sbjct: 241 AAQSCALSLVRQL 253


>gi|58047678|gb|AAH89159.1| Dhx9 protein [Mus musculus]
          Length = 459

 Score = 48.1 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213
           D K  L  W   K  +TP Y++    G  +  +F   V + G   A GM  S  K+ A+ 
Sbjct: 3   DIKNFLYAWC-GKRKMTPAYEIRAV-GNKNRQKFMCEVRVEGFNYA-GMGNSTNKKDAQS 59

Query: 214 VAAAE 218
            AA +
Sbjct: 60  NAARD 64



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210
           +AK  L ++   +  +  EYK T   GPDH+  F   + I      + +       +K+ 
Sbjct: 182 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 239

Query: 211 AEQVAAAEVLKRE 223
           A Q  A  ++++ 
Sbjct: 240 AAQSCALSLVRQL 252


>gi|2688940|gb|AAC05301.1| RNA helicase A [Mus musculus]
          Length = 161

 Score = 48.1 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213
           D K  L  W   K  +TP Y++    G  +  +F   V + G   A GM  S  K+ A+ 
Sbjct: 3   DIKNFLYAWC-GKRKMTPAYEIRAV-GNKNRQKFMCEVRVEGFNYA-GMGNSTNKKDAQS 59

Query: 214 VAAAE 218
            AA +
Sbjct: 60  NAARD 64


>gi|74202542|dbj|BAE24846.1| unnamed protein product [Mus musculus]
          Length = 735

 Score = 48.1 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213
           D K  L  W   K  +TP Y++    G  +  +F   V + G   A GM  S  K+ A+ 
Sbjct: 3   DIKNFLYAWC-GKRKMTPAYEIRAV-GNKNRQKFMCEVRVEGFNYA-GMGNSTNKKDAQS 59

Query: 214 VAAAE 218
            AA +
Sbjct: 60  NAARD 64



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210
           +AK  L ++   +  +  EYK T   GPDH+  F   + I      + +       +K+ 
Sbjct: 183 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 240

Query: 211 AEQVAAAEVLKRE 223
           A Q  A  ++++ 
Sbjct: 241 AAQSCALSLVRQL 253


>gi|71153505|sp|O70133|DHX9_MOUSE RecName: Full=ATP-dependent RNA helicase A; AltName: Full=DEAH box
           protein 9; Short=mHEL-5; AltName: Full=Nuclear DNA
           helicase II; Short=NDH II
          Length = 1380

 Score = 48.1 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213
           D K  L  W   K  +TP Y++    G  +  +F   V + G   A GM  S  K+ A+ 
Sbjct: 3   DIKNFLYAWC-GKRKMTPAYEIRAV-GNKNRQKFMCEVRVEGFNYA-GMGNSTNKKDAQS 59

Query: 214 VAAAE 218
            AA +
Sbjct: 60  NAARD 64



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210
           +AK  L ++   +  +  EYK T   GPDH+  F   + I      + +       +K+ 
Sbjct: 182 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 239

Query: 211 AEQVAAAEVLKRE 223
           A Q  A  ++++ 
Sbjct: 240 AAQSCALSLVRQL 252


>gi|324504592|gb|ADY41982.1| tRNA-dihydrouridine synthase 2-like protein [Ascaris suum]
          Length = 454

 Score = 48.1 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 4/93 (4%)

Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
           E    F+D  +  + L+     R  K  L E         P Y   FR    +D R+  +
Sbjct: 354 ETGIRFIDLTFPPKRLRDRCGARTPKCVLNELCDESGIERPIYDCKFR---PNDKRYEAL 410

Query: 193 VEISGLAPAQGMD-CSKRAAEQVAAAEVLKREG 224
           +E+ G      +   +KR AEQVAA   L   G
Sbjct: 411 IEVDGCKFLSRVGQPNKRMAEQVAALAALVGLG 443


>gi|3021544|emb|CAA10952.1| OV20.0L [Orf virus]
          Length = 183

 Score = 48.1 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + + E+         E+  T   G DH PRFT  + ISG   A     SK+ A   A
Sbjct: 109 NPVSAVNEFCMMTRRSL-EFCETRSGGEDHCPRFTCTITISGKVVAAADGASKKLARHTA 167

Query: 216 AAEVL 220
            +  L
Sbjct: 168 CSSAL 172


>gi|302505423|ref|XP_003014418.1| hypothetical protein ARB_06980 [Arthroderma benhamiae CBS 112371]
 gi|291178239|gb|EFE34029.1| hypothetical protein ARB_06980 [Arthroderma benhamiae CBS 112371]
          Length = 267

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 56/145 (38%), Gaps = 22/145 (15%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH-----------------FDSAK 67
           +A+TH S     +   +RL + G +I+ L  S  L  +                 +DSA 
Sbjct: 115 QAVTHKSFDQGRRGFNDRLAYFGKQIILLQASLALVQNPTAYAQPSKPDPFERLPYDSAA 174

Query: 68  EGEL----SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVC-SFMTSIQADVVESL 122
              L        + L   +  S +AR   +   +R    ++ D+  S + +I    + ++
Sbjct: 175 LKGLEVLSQNTRSQLTRKKEMSALARHYGVNEVMRWVPRMQHDLTESGVDTIYTHAMYAI 234

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA 147
           I A+ L+ G +VA   V     +  
Sbjct: 235 IGAIALEHGSKVANEIVRDRILKPL 259


>gi|82469816|gb|ABB77166.1| R2D2 [Drosophila santomea]
          Length = 309

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           + LQE+      + P Y+     G D    +   V++  +  A G   SKR A+ +AA  
Sbjct: 3   SALQEFCAKTKNIPPAYEFID--GEDGG--YVCKVDLMEVE-AYGNGRSKRDAKHLAAVN 57

Query: 219 VLKR 222
           +L++
Sbjct: 58  ILRK 61



 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAA 217
           EL+++        P  ++  +SG  + P F     ++ +        S  K+ A Q AA 
Sbjct: 97  ELRDYCVRHEMPLPTIEIVQQSGTPNAPEFVACCSVASIVR---YGKSDKKKDARQRAAI 153

Query: 218 EVL 220
           E+L
Sbjct: 154 EML 156


>gi|324506281|gb|ADY42685.1| ATP-dependent RNA helicase A [Ascaris suum]
          Length = 792

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 22/73 (30%), Gaps = 6/73 (8%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI-----SGLAPAQGMDCSKRA 210
           ++K  L E+          Y      G D    F     +          A     SK+ 
Sbjct: 178 NSKRHLNEFIQKIKQPPISYNTRGV-GTDSARTFIAEAALFVPEAGRKFTAHAQGSSKKV 236

Query: 211 AEQVAAAEVLKRE 223
           AE   A  ++++ 
Sbjct: 237 AESSCALSLIRQL 249



 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 2/64 (3%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQV 214
           D K  L  W   K    P Y +T  +G      F   + +SG      G+  +K+ A   
Sbjct: 4   DIKGWLYGWLGKKKLGVPTYNITTNAGRGRAR-FKCELRVSGQPHVGLGVSVNKKDAATN 62

Query: 215 AAAE 218
           AA +
Sbjct: 63  AARD 66


>gi|324500369|gb|ADY40175.1| ATP-dependent RNA helicase A [Ascaris suum]
          Length = 1452

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 22/73 (30%), Gaps = 6/73 (8%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI-----SGLAPAQGMDCSKRA 210
           ++K  L E+          Y      G D    F     +          A     SK+ 
Sbjct: 178 NSKRHLNEFIQKIKQPPISYNTRGV-GTDSARTFIAEAALFVPEAGRKFTAHAQGSSKKV 236

Query: 211 AEQVAAAEVLKRE 223
           AE   A  ++++ 
Sbjct: 237 AESSCALSLIRQL 249



 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 2/64 (3%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAEQV 214
           D K  L  W   K    P Y +T  +G      F   + +SG      G+  +K+ A   
Sbjct: 4   DIKGWLYGWLGKKKLGVPTYNITTNAGRGRAR-FKCELRVSGQPHVGLGVSVNKKDAATN 62

Query: 215 AAAE 218
           AA +
Sbjct: 63  AARD 66


>gi|159164135|pdb|2DIX|A Chain A, Solution Structure Of The Dsrm Domain Of Protein Activator
           Of The Interferon-Induced Protein Kinase
          Length = 84

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 158 KTELQ---EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           KT +Q   E+      + P Y+        H P FT  V +  +    G   SK+ A+  
Sbjct: 8   KTPIQVLHEYGMKTKNI-PVYECERSDVQIHVPTFTFRVTVGDIT-CTGEGTSKKLAKHR 65

Query: 215 AAAEVLK 221
           AA   + 
Sbjct: 66  AAEAAIN 72


>gi|31096345|gb|AAP43510.1| E3L-like protein [Orf virus]
 gi|41018507|gb|AAR98115.1| ORF020 dsRNA-binding PKR inhibitor [Orf virus]
          Length = 183

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + + E+         E+  T   G DH PRFT  + ISG   +     SK+ A   A
Sbjct: 109 NPVSAVNEFCMMTRRSL-EFCETRSGGEDHCPRFTCTITISGKVVSVADGASKKLARHTA 167

Query: 216 AAEVL 220
            +  L
Sbjct: 168 CSSAL 172


>gi|302854164|ref|XP_002958592.1| hypothetical protein VOLCADRAFT_99895 [Volvox carteri f. nagariensis]
 gi|300256053|gb|EFJ40329.1| hypothetical protein VOLCADRAFT_99895 [Volvox carteri f. nagariensis]
          Length = 2198

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 156  DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
            +  T+L E A  +  V   ++   + G      +T+     G    +G   +K+ A+++A
Sbjct: 1777 NPVTKLNEIAQ-RNKVRLAFR-EAKDGESGSVGWTITAIYGGKDIGRGHAATKKDAKRLA 1834

Query: 216  AAEVLKREGI 225
            A + LK  GI
Sbjct: 1835 AMDGLKALGI 1844


>gi|310796629|gb|EFQ32090.1| 54S ribosomal protein L3 [Glomerella graminicola M1.001]
          Length = 428

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 39/115 (33%), Gaps = 5/115 (4%)

Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK---TELQEWAHA 167
             +  A  V ++  A+Y   G + A  F+D +   R +   K     K    EL      
Sbjct: 279 RNNAHAAFVRAVAGAVYAHAGRDAARAFIDAHVLSRKVDLEKLF-SFKLPTRELAMLCAR 337

Query: 168 KFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +    P  ++   +G     P + V +        +G   S   A   A+   LK
Sbjct: 338 EGFEAPVARLESETGRMSRTPVYVVGIYSGRDKLGEGTGASLDFARLQASMNALK 392



 Score = 41.2 bits (96), Expect = 0.100,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 29/73 (39%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           L +AL   S   S   +   L  +G  ++G  +S  L  H+       L     +   ++
Sbjct: 118 LARALVDPSADPSPNFNNANLAVVGGTLIGYHVSEWLIAHYPRLPMAILYEAMRAYAGSD 177

Query: 83  TCSQVARELDLAS 95
           +  +VA +  + S
Sbjct: 178 SLYRVASQWGVES 190


>gi|73960437|ref|XP_859173.1| PREDICTED: similar to ATP-dependent RNA helicase A (Nuclear DNA
           helicase II) (NDH II) (DEAH-box protein 9) isoform 4
           [Canis familiaris]
          Length = 223

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQV 214
           D K  L  W   K  +TP Y++    G  +  +F   V + G      G   +K+ A+  
Sbjct: 3   DVKNFLYAWC-GKRKMTPSYEIRAV-GNKNRQKFMCEVRVEGYNYIGMGNSTNKKDAQSN 60

Query: 215 AAAE 218
           AA +
Sbjct: 61  AARD 64


>gi|270006306|gb|EFA02754.1| hypothetical protein TcasGA2_TC008487 [Tribolium castaneum]
          Length = 742

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +Y +  ++GPDH P F +  +++      G+  SK  A      +VL+  
Sbjct: 190 KYTLVEKTGPDHKPTFKMAAKVNEKTYF-GLGGSKAKARMNVVEQVLENL 238



 Score = 38.9 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            F V + I G +   G+  SK++A++VAA   L
Sbjct: 356 EFKVTITI-GKSLFVGIGPSKKSAKKVAALSAL 387


>gi|224111576|ref|XP_002315906.1| predicted protein [Populus trichocarpa]
 gi|222864946|gb|EEF02077.1| predicted protein [Populus trichocarpa]
          Length = 1053

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 57/182 (31%), Gaps = 33/182 (18%)

Query: 43   LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102
            LEF     +   ++ +  +      E   +   N  +       +    +L S +R+   
Sbjct: 874  LEF----YMQPSVAEMYQSLRRELDELIQTKLLNPRMD------IHMHHELLSAVRLLVS 923

Query: 103  LRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQ 162
                   F           +    +                 +    SG    ++K++LQ
Sbjct: 924  EDNCDGRF-----------VFGCHFFKSSKPAVFATQPTLISRG--DSGPGGDNSKSQLQ 970

Query: 163  EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD---CSKRAAEQVAAAEV 219
                      P YK         + +F   VE +G+     M     +K++AE+ AAAE 
Sbjct: 971  TLLTRAGYAAPSYKTKQLK----NNQFRATVEFNGMQI---MGQPCNNKKSAEKDAAAEA 1023

Query: 220  LK 221
            L+
Sbjct: 1024 LQ 1025


>gi|82582933|gb|ABB84392.1| interferon resistance protein [Orf virus]
          Length = 166

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + + E+         E+  T   G DH PRFT  ++IS    A+    SK+ A   A
Sbjct: 92  NPVSAVNEFCMMTHRSL-EFCETRSGGEDHCPRFTCTIKISKKVVAEADGASKKLARYAA 150

Query: 216 AAEVL 220
            A  L
Sbjct: 151 CASAL 155


>gi|46110176|ref|XP_382146.1| hypothetical protein FG01970.1 [Gibberella zeae PH-1]
          Length = 383

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 43/134 (32%), Gaps = 5/134 (3%)

Query: 92  DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG 151
           D    I            +     +  V++++ ++Y   G + A  FV  +   R +   
Sbjct: 215 DFGDVIEEPKTGEDGYKYYQHEAHSSFVQAVVGSIYTHAGQDAARDFVKSHVLSRQVDVS 274

Query: 152 KFRRDAK---TELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCS 207
              +  K    EL      +    P  ++   +G     P F V +  S     +G   S
Sbjct: 275 AMFQ-FKLPTRELALLCAREGFEAPIARLESETGRHSRTPVFIVGIYSSSEKLGEGAGAS 333

Query: 208 KRAAEQVAAAEVLK 221
              A   A+   LK
Sbjct: 334 LDLARWKASMNALK 347



 Score = 42.0 bits (98), Expect = 0.060,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 22/70 (31%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           L + L   S   +   +   L FLG   +   +   +   +       +     +    E
Sbjct: 89  LARTLIVPSADQNPSYNNSNLAFLGSTFINYHVLEYIVCKWPRLPMPIVYEVLRAFAGKE 148

Query: 83  TCSQVARELD 92
           +  Q+AR   
Sbjct: 149 SLHQIARRWG 158


>gi|324518074|gb|ADY46997.1| Protein SON [Ascaris suum]
 gi|324540941|gb|ADY49607.1| Protein SON [Ascaris suum]
          Length = 140

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 6/82 (7%)

Query: 147 ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMD 205
            +      +   + L E    K    P++     SGP ++ RFT    ++G+        
Sbjct: 54  VVSMEVAGKHPVSMLMELCSKKHWPPPQFTCI-ESGPSNNRRFTWKAVVNGVEYEPIASS 112

Query: 206 CSKR--AAEQVAAAEVLKREGI 225
            SK+   A QV A  VL+  G+
Sbjct: 113 ASKKTGKA-QVCA-VVLQSLGL 132


>gi|116283679|gb|AAH33911.1| Dhx9 protein [Mus musculus]
          Length = 198

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213
           D K  L  W   K  +TP Y++    G  +  +F   V + G   A GM  S  K+ A+ 
Sbjct: 3   DIKNFLYAWC-GKRKMTPAYEIRAV-GNKNRQKFMCEVRVEGFNYA-GMGNSTNKKDAQS 59

Query: 214 VAAAE 218
            AA +
Sbjct: 60  NAARD 64


>gi|3650397|emb|CAA77038.1| maleless protein [Sciara ocellaris]
          Length = 1252

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 5/65 (7%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213
           D K+    W   K  V P+++ +  +GP H  RF   + ++G     G   S  K+ AE+
Sbjct: 3   DIKSFFHSWC-NKTKVEPQFE-SRPTGPKHRQRFLCELRVAGFNY-VGAGNSTVKKDAEK 59

Query: 214 VAAAE 218
            AA +
Sbjct: 60  NAARD 64


>gi|218675756|gb|AAI69284.2| DEAH (Asp-Glu-Ala-His) box polypeptide 9 [synthetic construct]
          Length = 413

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213
           D K  L  W   K  +TP Y++    G  +  +F   V + G   A GM  S  K+ A+ 
Sbjct: 3   DIKNFLYAWC-GKRKMTPAYEIRAV-GNKNRQKFMCEVRVEGFNYA-GMGNSTNKKDAQS 59

Query: 214 VAAAE 218
            AA +
Sbjct: 60  NAARD 64



 Score = 44.7 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210
           +AK  L ++   +  +  EYK T   GPDH+  F   + I      + +       +K+ 
Sbjct: 182 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 239

Query: 211 AEQVAAAEVLKRE 223
           A Q  A  ++++ 
Sbjct: 240 AAQSCALSLVRQL 252


>gi|189236875|ref|XP_974662.2| PREDICTED: similar to adenosine deaminase [Tribolium castaneum]
          Length = 622

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +Y +  ++GPDH P F +  +++      G+  SK  A      +VL+  
Sbjct: 190 KYTLVEKTGPDHKPTFKMAAKVNEKTYF-GLGGSKAKARMNVVEQVLENL 238


>gi|302653505|ref|XP_003018578.1| RNAse III, putative [Trichophyton verrucosum HKI 0517]
 gi|291182232|gb|EFE37933.1| RNAse III, putative [Trichophyton verrucosum HKI 0517]
          Length = 160

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 47/127 (37%), Gaps = 6/127 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           R   +E  + Y F ++++   AL       S  +    L  +G  ++ L + T  ++   
Sbjct: 15  RTKAMEDLLEYRFKDKTIALSALNLPGRLTSI-KDNTGLAQVGKAVMELFLITDGYDK-- 71

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
                 ++     ++     + +  +  L   +     +R    +      A  V++L+ 
Sbjct: 72  DMDPENINTLLTFVLDNSKLADIGTKKGLGRCMM---GMRSSTANLTPLYTARTVQALMG 128

Query: 125 ALYLDGG 131
           A+YLD  
Sbjct: 129 AVYLDSD 135


>gi|62637420|ref|YP_227418.1| DsRNA binding PKR inhibitor [Deerpox virus W-848-83]
 gi|115503280|gb|ABI99198.1| DsRNA binding PKR inhibitor [Deerpox virus W-848-83]
          Length = 199

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            ++  + L E+          +     SGP H P FT  + ISG+     +  +K+ A+ 
Sbjct: 124 DKNPCSILNEYCQYTSRD--WFIDIISSGPIHKPLFTATLCISGVKFRSAIGSTKKEAKT 181

Query: 214 VAAAEVL 220
            A    +
Sbjct: 182 NATKMAM 188


>gi|119631442|gb|EAX11037.1| protein kinase, interferon-inducible double stranded RNA dependent
           activator, isoform CRA_d [Homo sapiens]
          Length = 105

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 158 KTELQ---EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           KT +Q   E+      + P Y+        H P FT  V +  +    G   SK+ A+  
Sbjct: 33  KTPIQVLHEYGMKTKNI-PVYECERSDVQIHVPTFTFRVTVGDIT-CTGEGTSKKLAKHR 90

Query: 215 AAAEVLK 221
           AA   + 
Sbjct: 91  AAEAAIN 97


>gi|195119908|ref|XP_002004471.1| GI19596 [Drosophila mojavensis]
 gi|193909539|gb|EDW08406.1| GI19596 [Drosophila mojavensis]
          Length = 1351

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQ 213
            D K+ L  +  AK    P+++V    GP H  RF   V +      A G   +K+ AE+
Sbjct: 1   MDIKSFLFSYC-AKNQTEPKFEVRPI-GPKHRQRFLCEVRVDQCPYVAVGNSTNKKDAEK 58

Query: 214 VAAAE 218
            A+ +
Sbjct: 59  NASRD 63



 Score = 38.5 bits (89), Expect = 0.76,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI-----SGLAPAQGMDCSKRA 210
           +AK  L  +  +      +YK T   GPDH   F   + I          A+    +K++
Sbjct: 164 NAKDRLNIYKQSNNIKD-DYKYTPV-GPDHARSFMAELSIYVPALKRKVTARETGSNKKS 221

Query: 211 AEQVAAAEVLKRE 223
           A +  A  ++++ 
Sbjct: 222 ASKSCALSLVRQL 234


>gi|195027549|ref|XP_001986645.1| GH20409 [Drosophila grimshawi]
 gi|193902645|gb|EDW01512.1| GH20409 [Drosophila grimshawi]
          Length = 1335

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQ 213
            D K+ L  +  AK    P+++V   +GP H  RF   V +   +  A G   +K+ AE+
Sbjct: 1   MDIKSFLFSYC-AKNQTEPKFEV-RPTGPKHRQRFLCEVRVDLCSYVAVGNSTNKKDAEK 58

Query: 214 VAAAE 218
            A+ +
Sbjct: 59  NASRD 63


>gi|82469828|gb|ABB77172.1| R2D2 [Drosophila melanogaster]
 gi|82469832|gb|ABB77174.1| R2D2 [Drosophila melanogaster]
          Length = 311

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            + A + LQE+        P Y       P  D  +   VE+  +  A G   SKR A+ 
Sbjct: 3   NKSAVSALQEFCARTQINLPTYSFI----PGEDGGYVCKVELLEIE-ALGNGRSKRDAKH 57

Query: 214 VAAAEVLKR 222
           +AA+ +L++
Sbjct: 58  LAASNILRK 66



 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS- 207
           +     RD   EL+++   +    P  +V  +SG    P F     ++ +        S 
Sbjct: 88  ELTNLNRDMVKELRDYCVRREMPLPCIEVVQQSGTPSAPEFVACCSVASIVR---YGKSD 144

Query: 208 -KRAAEQVAAAEVL 220
            K+ A Q AA E+L
Sbjct: 145 KKKDARQRAAIEML 158


>gi|332230603|ref|XP_003264483.1| PREDICTED: ATP-dependent RNA helicase A isoform 1 [Nomascus
           leucogenys]
          Length = 1270

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213
           D K  L  W   K  +TP Y++    G  +  +F   V++ G     GM  S  K+ A+ 
Sbjct: 3   DVKNFLYAWC-GKRKMTPSYEIRAV-GNKNRQKFMCEVQVEGYNY-TGMGNSTNKKDAQS 59

Query: 214 VAAAE 218
            AA +
Sbjct: 60  NAARD 64



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210
           +AK  L ++   +  +  EYK T   GPDH+  F   + I      + +       +K+ 
Sbjct: 180 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 237

Query: 211 AEQVAAAEVLKRE 223
           A Q  A  ++++ 
Sbjct: 238 AAQSCALSLVRQL 250


>gi|296229581|ref|XP_002760333.1| PREDICTED: ATP-dependent RNA helicase A isoform 1 [Callithrix
           jacchus]
 gi|296229583|ref|XP_002760334.1| PREDICTED: ATP-dependent RNA helicase A isoform 2 [Callithrix
           jacchus]
          Length = 1270

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213
           D K  L  W   K  +TP Y++    G  +  +F   V++ G     GM  S  K+ A+ 
Sbjct: 3   DVKNFLYAWC-GKRKMTPSYEIRAV-GNKNRQKFMCEVQVEGYNY-TGMGNSTNKKDAQS 59

Query: 214 VAAAE 218
            AA +
Sbjct: 60  NAARD 64



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210
           +AK  L ++   +  +  EYK T   GPDH+  F   + I      + +       +K+ 
Sbjct: 180 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 237

Query: 211 AEQVAAAEVLKRE 223
           A Q  A  ++++ 
Sbjct: 238 AAQSCALSLVRQL 250


>gi|119611543|gb|EAW91137.1| DEAH (Asp-Glu-Ala-His) box polypeptide 9, isoform CRA_a [Homo
           sapiens]
          Length = 1014

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213
           D K  L  W   K  +TP Y++    G  +  +F   V++ G     GM  S  K+ A+ 
Sbjct: 3   DVKNFLYAWC-GKRKMTPSYEIRAV-GNKNRQKFMCEVQVEGYNY-TGMGNSTNKKDAQS 59

Query: 214 VAAAE 218
            AA +
Sbjct: 60  NAARD 64



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210
           +AK  L ++   +  +  EYK T   GPDH+  F   + I      + +       +K+ 
Sbjct: 180 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 237

Query: 211 AEQVAAAEVLKRE 223
           A Q  A  ++++ 
Sbjct: 238 AAQSCALSLVRQL 250


>gi|116283708|gb|AAH25245.1| DHX9 protein [Homo sapiens]
          Length = 593

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213
           D K  L  W   K  +TP Y++    G  +  +F   V++ G     GM  S  K+ A+ 
Sbjct: 3   DVKNFLYAWC-GKRKMTPSYEIRAV-GNKNRQKFMCEVQVEGYNY-TGMGNSTNKKDAQS 59

Query: 214 VAAAE 218
            AA +
Sbjct: 60  NAARD 64



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210
           +AK  L ++   +  +  EYK T   GPDH+  F   + I      + +       +K+ 
Sbjct: 180 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 237

Query: 211 AEQVAAAEVLKRE 223
           A Q  A  ++++ 
Sbjct: 238 AAQSCALSLVRQL 250


>gi|109019118|ref|XP_001114405.1| PREDICTED: ATP-dependent RNA helicase A isoform 2 [Macaca mulatta]
 gi|297281300|ref|XP_002802074.1| PREDICTED: ATP-dependent RNA helicase A [Macaca mulatta]
          Length = 1275

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213
           D K  L  W   K  +TP Y++    G  +  +F   V++ G     GM  S  K+ A+ 
Sbjct: 3   DVKNFLYAWC-GKRKMTPSYEIRAV-GNKNRQKFMCEVQVEGYNY-TGMGNSTNKKDAQS 59

Query: 214 VAAAE 218
            AA +
Sbjct: 60  NAARD 64



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210
           +AK  L ++   +  +  EYK T   GPDH+  F   + I      + +       +K+ 
Sbjct: 180 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 237

Query: 211 AEQVAAAEVLKRE 223
           A Q  A  ++++ 
Sbjct: 238 AAQSCALSLVRQL 250


>gi|33878473|gb|AAH14246.1| DHX9 protein [Homo sapiens]
          Length = 599

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213
           D K  L  W   K  +TP Y++    G  +  +F   V++ G     GM  S  K+ A+ 
Sbjct: 3   DVKNFLYAWC-GKRKMTPSYEIRAV-GNKNRQKFMCEVQVEGYNY-TGMGNSTNKKDAQS 59

Query: 214 VAAAE 218
            AA +
Sbjct: 60  NAARD 64



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210
           +AK  L ++   +  +  EYK T   GPDH+  F   + I      + +       +K+ 
Sbjct: 180 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 237

Query: 211 AEQVAAAEVLKRE 223
           A Q  A  ++++ 
Sbjct: 238 AAQSCALSLVRQL 250


>gi|62020087|gb|AAH08773.1| DHX9 protein [Homo sapiens]
          Length = 596

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213
           D K  L  W   K  +TP Y++    G  +  +F   V++ G     GM  S  K+ A+ 
Sbjct: 3   DVKNFLYAWC-GKRKMTPSYEIRAV-GNKNRQKFMCEVQVEGYNY-TGMGNSTNKKDAQS 59

Query: 214 VAAAE 218
            AA +
Sbjct: 60  NAARD 64



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210
           +AK  L ++   +  +  EYK T   GPDH+  F   + I      + +       +K+ 
Sbjct: 180 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 237

Query: 211 AEQVAAAEVLKRE 223
           A Q  A  ++++ 
Sbjct: 238 AAQSCALSLVRQL 250


>gi|297662534|ref|XP_002809755.1| PREDICTED: ATP-dependent RNA helicase A-like [Pongo abelii]
 gi|71153339|sp|Q5R874|DHX9_PONAB RecName: Full=ATP-dependent RNA helicase A; AltName: Full=DEAH box
           protein 9; AltName: Full=Nuclear DNA helicase II;
           Short=NDH II
 gi|55730630|emb|CAH92036.1| hypothetical protein [Pongo abelii]
          Length = 1269

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213
           D K  L  W   K  +TP Y++    G  +  +F   V++ G     GM  S  K+ A+ 
Sbjct: 3   DVKNFLYAWC-GKRKMTPSYEIRAV-GNKNRQKFMCEVQVEGYNY-TGMGNSTNKKDAQS 59

Query: 214 VAAAE 218
            AA +
Sbjct: 60  NAARD 64



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210
           +AK  L ++   +  +  EYK T   GPDH+  F   + I      + +       +K+ 
Sbjct: 180 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 237

Query: 211 AEQVAAAEVLKRE 223
           A Q  A  ++++ 
Sbjct: 238 AAQSCALSLVRQL 250


>gi|100913206|ref|NP_001348.2| ATP-dependent RNA helicase A [Homo sapiens]
 gi|332811349|ref|XP_003308679.1| PREDICTED: ATP-dependent RNA helicase A isoform 1 [Pan troglodytes]
 gi|116241330|sp|Q08211|DHX9_HUMAN RecName: Full=ATP-dependent RNA helicase A; AltName: Full=DEAH box
           protein 9; AltName: Full=Nuclear DNA helicase II;
           Short=NDH II
 gi|55662450|emb|CAH71701.1| DEAH (Asp-Glu-Ala-His) box polypeptide 9 [Homo sapiens]
 gi|56206329|emb|CAI19277.1| DEAH (Asp-Glu-Ala-His) box polypeptide 9 [Homo sapiens]
 gi|119611544|gb|EAW91138.1| DEAH (Asp-Glu-Ala-His) box polypeptide 9, isoform CRA_b [Homo
           sapiens]
 gi|187952519|gb|AAI37137.1| DEAH (Asp-Glu-Ala-His) box polypeptide 9 [Homo sapiens]
 gi|255652739|dbj|BAH90798.1| DEAH (Asp-Glu-Ala-His) box polypeptide 9 [synthetic construct]
          Length = 1270

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213
           D K  L  W   K  +TP Y++    G  +  +F   V++ G     GM  S  K+ A+ 
Sbjct: 3   DVKNFLYAWC-GKRKMTPSYEIRAV-GNKNRQKFMCEVQVEGYNY-TGMGNSTNKKDAQS 59

Query: 214 VAAAE 218
            AA +
Sbjct: 60  NAARD 64



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210
           +AK  L ++   +  +  EYK T   GPDH+  F   + I      + +       +K+ 
Sbjct: 180 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 237

Query: 211 AEQVAAAEVLKRE 223
           A Q  A  ++++ 
Sbjct: 238 AAQSCALSLVRQL 250


>gi|1082769|pir||A47363 RNA helicase A - human
          Length = 1279

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213
           D K  L  W   K  +TP Y++    G  +  +F   V++ G     GM  S  K+ A+ 
Sbjct: 3   DVKNFLYAWC-GKRKMTPSYEIRAV-GNKNRQKFMCEVQVEGYNY-TGMGNSTNKKDAQS 59

Query: 214 VAAAE 218
            AA +
Sbjct: 60  NAARD 64



 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210
           +AK  L ++   +  +  EYK T   GPDH+  F   + I      + +       +K+ 
Sbjct: 180 NAKARLIQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 237

Query: 211 AEQVAAAEVLKRE 223
           A Q  A  ++++ 
Sbjct: 238 AAQSCALSLVRQL 250


>gi|1806048|emb|CAA71668.1| nuclear DNA helicase II [Homo sapiens]
          Length = 1270

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213
           D K  L  W   K  +TP Y++    G  +  +F   V++ G     GM  S  K+ A+ 
Sbjct: 3   DVKNFLYAWC-GKRKMTPSYEIRAV-GNKNRQKFMCEVQVEGYNY-TGMGNSTNKKDAQS 59

Query: 214 VAAAE 218
            AA +
Sbjct: 60  NAARD 64



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210
           +AK  L ++   +  +  EYK T   GPDH+  F   + I      + +       +K+ 
Sbjct: 180 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 237

Query: 211 AEQVAAAEVLKRE 223
           A Q  A  ++++ 
Sbjct: 238 AAQSCALSLVRQL 250


>gi|255722171|ref|XP_002546020.1| predicted protein [Candida tropicalis MYA-3404]
 gi|240136509|gb|EER36062.1| predicted protein [Candida tropicalis MYA-3404]
          Length = 709

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPR-FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            + AK    PEY V   +    D + F   V+I  +    G   +K+ A   AA   L  
Sbjct: 636 ISQAKIMP-PEYNVHELTPLSQDRKLFYATVQIGDVYLGAGYGSTKKEARHKAAMCALNN 694


>gi|322819389|gb|EFZ26529.1| hypothetical protein TCSYLVIO_7294 [Trypanosoma cruzi]
          Length = 220

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 65/168 (38%), Gaps = 27/168 (16%)

Query: 7   STLEKRIGYAF-----ANRSLLEKALTHSSI--SHSYQESYERLEFLGDRILGLLISTLL 59
           S L +R+   F      +  L  +A  + S   S +   +      +G+ +L  +   L+
Sbjct: 52  SELSRRLQKQFPEIKRQHHVLYLRAFINPSFTTSDAMNSTMNATTSIGEALLASVGECLI 111

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVAR-ELDLASFIRVSSDLRKDVCSFMTSI---- 114
            N F   K  E+ +  + L+S  T S V R   ++   +   + ++      + S     
Sbjct: 112 VNAFRDLKRDEVLLLMSFLLSDATLSSVLRYHWEMEDMVLTDASVQLFQGKTLRSTAGLM 171

Query: 115 ---------------QADVVESLIAALYLDGGIEVAGTFVDKYWKQRA 147
                           A  V+S+I A+YLD G+E A  F+ K+  Q  
Sbjct: 172 QWLSSSGKQQTPDPYCAGCVKSMIGAVYLDRGLEEAAAFIYKHVLQNI 219


>gi|156373222|ref|XP_001629432.1| predicted protein [Nematostella vectensis]
 gi|156216432|gb|EDO37369.1| predicted protein [Nematostella vectensis]
          Length = 313

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 6/65 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + L E A  K   T  ++    +       FT  V I     A G   +K+ A++ A
Sbjct: 98  NPISILTESAQ-KSKKTINFQELQST-----NLFTCAVIIQDKLVATGEASNKKDAKRNA 151

Query: 216 AAEVL 220
           A   L
Sbjct: 152 AENAL 156


>gi|2961456|gb|AAC05725.1| RNA helicase A [Mus musculus]
          Length = 1380

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213
           D K  L  W   K  +TP Y++    G  +  +F   V + G    +GM  S  K+ A+ 
Sbjct: 3   DIKNFLYAWC-GKRKMTPAYEIRAV-GNKNRQKFMCEVRVEGFNY-RGMGNSTNKKDAQS 59

Query: 214 VAAAE 218
            AA +
Sbjct: 60  NAARD 64



 Score = 41.2 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210
           +AK  L  +   +  +  EYK T   GPDH+  F   + I      + +      C+K+ 
Sbjct: 182 NAKARLNHYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGCNKKL 239

Query: 211 AEQVAAAEVLKRE 223
           A Q  A  ++++ 
Sbjct: 240 AAQSCALSLVRQL 252


>gi|293335783|ref|NP_001169831.1| hypothetical protein LOC100383723 [Zea mays]
 gi|224031877|gb|ACN35014.1| unknown [Zea mays]
          Length = 310

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 20/36 (55%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +F++ V I G    +G+  ++R A++ AA   L+  
Sbjct: 96  QFSIEVWIVGEKVGEGIGRTRREAQRQAAEMSLRNL 131


>gi|316954971|gb|EFV46417.1| conserved hypothetical protein [Trichinella spiralis]
          Length = 180

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 11/122 (9%)

Query: 110 FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK----FRRDA-K--TELQ 162
           +  S+ +  + S++ A+  DG    AG FV  +   + +        + ++  K  T L 
Sbjct: 4   YNNSLMSSSLRSIVGAILFDGNEAEAGYFVQDFVLTQLINVDINELWYFKEPLKILTALL 63

Query: 163 EWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           E        TPE ++   SG     P + V +        +    S   A ++AA + LK
Sbjct: 64  E---KNDRGTPEPRILRSSGEFTVTPVYVVGIYCDKKLIGESAGESVLIATEMAARDCLK 120

Query: 222 RE 223
             
Sbjct: 121 NL 122


>gi|82469838|gb|ABB77177.1| R2D2 [Drosophila melanogaster]
          Length = 311

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            + A + LQE+        P Y       P  D  +   VE+  +  A G   SKR A+ 
Sbjct: 3   NKSAVSALQEFCARTQINLPTYSFI----PGEDGGYVCKVELLEIE-ALGNGRSKRDAKH 57

Query: 214 VAAAEVLKR 222
           +AA+ +L++
Sbjct: 58  LAASNILRK 66



 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS- 207
           +     RD   EL+++   +    P  +V  +SG    P F     ++ +        S 
Sbjct: 88  ELTNLNRDMVKELRDYCVRREMPLPCIEVVQQSGTPSAPEFVACCSVASIVR---YGKSD 144

Query: 208 -KRAAEQVAAAEVL 220
            K+ A Q AA E+L
Sbjct: 145 KKKDARQRAAIEML 158


>gi|90078150|dbj|BAE88755.1| unnamed protein product [Macaca fascicularis]
          Length = 272

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           +    G      F + V++ G   A+G   +K+ A++ AA  +L+  G
Sbjct: 2   LLTERGLPRRREFVMQVKV-GNHTAEGAGTNKKVAKRNAAENMLEILG 48


>gi|170574690|ref|XP_001892920.1| hypothetical protein,  conserved [Brugia malayi]
 gi|158601296|gb|EDP38248.1| hypothetical protein, conserved [Brugia malayi]
          Length = 863

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 21/41 (51%)

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           P+  P F   + I+G    +G+  SK+ A+  AA + L + 
Sbjct: 458 PNKPPMFKCTLTINGTHKFEGIGQSKKTAKSAAAEQALTKL 498


>gi|324502539|gb|ADY41117.1| Protein SON [Ascaris suum]
          Length = 1051

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 6/82 (7%)

Query: 147  ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMD 205
             +      +   + L E    K    P++     SGP ++ RFT    ++G+        
Sbjct: 965  VVSMEVAGKHPVSMLMELCSKKHWPPPQFTCI-ESGPSNNRRFTWKAVVNGVEYEPIASS 1023

Query: 206  CSKR--AAEQVAAAEVLKREGI 225
             SK+   A QV A  VL+  G+
Sbjct: 1024 ASKKTGKA-QVCA-VVLQSLGL 1043


>gi|24582609|ref|NP_609152.1| r2d2, isoform A [Drosophila melanogaster]
 gi|281364575|ref|NP_001162903.1| r2d2, isoform B [Drosophila melanogaster]
 gi|7297298|gb|AAF52561.1| r2d2, isoform A [Drosophila melanogaster]
 gi|48958433|gb|AAT47770.1| LD06392p [Drosophila melanogaster]
 gi|82469830|gb|ABB77173.1| R2D2 [Drosophila melanogaster]
 gi|272406933|gb|ACZ94194.1| r2d2, isoform B [Drosophila melanogaster]
          Length = 311

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            + A + LQE+        P Y       P  D  +   VE+  +  A G   SKR A+ 
Sbjct: 3   NKSAVSALQEFCARTQINLPTYSFI----PGEDGGYVCKVELLEIE-ALGNGRSKRDAKH 57

Query: 214 VAAAEVLKR 222
           +AA+ +L++
Sbjct: 58  LAASNILRK 66



 Score = 45.8 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS- 207
           +     RD   EL+++   +    P  +V  +SG    P F     ++ +        S 
Sbjct: 88  ELTNLNRDMVKELRDYCVRREMPLPCIEVVQQSGTPSAPEFVACCSVASIVR---YGKSD 144

Query: 208 -KRAAEQVAAAEVL 220
            K+ A Q AA E+L
Sbjct: 145 KKKDARQRAAIEML 158


>gi|326533226|dbj|BAJ93585.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 932

 Score = 47.8 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 20/36 (55%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +F++ V I G    +G+  +++ A++ AA   L+  
Sbjct: 718 QFSIEVWIVGEKVGEGIGSTRKEAQRQAAEISLRNL 753


>gi|115534938|ref|NP_508195.2| hypothetical protein F55A4.4 [Caenorhabditis elegans]
 gi|90568094|gb|AAB07562.2| Hypothetical protein F55A4.4 [Caenorhabditis elegans]
          Length = 284

 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 1/69 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +   +L E+A   +   P ++            F +          +G   SK  +++ A
Sbjct: 143 NPVAQLNEYAQKFYKKYPTFEFVKEQAVGKHREFVIQATFENKTL-EGRGPSKIISKRAA 201

Query: 216 AAEVLKREG 224
           A  +L+  G
Sbjct: 202 AEAILESIG 210



 Score = 43.1 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 31/67 (46%), Gaps = 6/67 (8%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV---VEISGLAPAQ--GMDCSKRAAEQ 213
           + + E A  +  +   ++V    G  H+ ++ V    V    +  A+  G   +K++A+Q
Sbjct: 46  SIIHEKAQ-QLKLKINFEVLEEGGDQHNRQYAVRYTLVADDNVVKAKAMGKGKNKKSAQQ 104

Query: 214 VAAAEVL 220
            A  ++L
Sbjct: 105 EACTQLL 111


>gi|224072687|ref|XP_002303835.1| predicted protein [Populus trichocarpa]
 gi|222841267|gb|EEE78814.1| predicted protein [Populus trichocarpa]
          Length = 166

 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VVVEISGLAPA--QGM 204
            SG  +  AK++L E   A     P ++     GP H   FT  V + I G A    +  
Sbjct: 70  DSGGPKISAKSQLLETLAANKWKPPLFECFKEEGPCHKKLFTYKVAIRIEGEASTVLECF 129

Query: 205 DC---SKRAAEQVAAAEV---LKREGIW 226
                +K+ A + AA      LK  G +
Sbjct: 130 GYPKPTKKTAAEHAAEGALWYLKHLGYF 157


>gi|308198210|ref|XP_001387150.2| predicted protein [Scheffersomyces stipitis CBS 6054]
 gi|149389085|gb|EAZ63127.2| predicted protein [Pichia stipitis CBS 6054]
          Length = 217

 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 58/164 (35%), Gaps = 22/164 (13%)

Query: 19  NRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSL 78
           +  L  + LTH S  +  +   E+L  +G +IL L  +  +     S  E  ++ +   +
Sbjct: 62  DDDLALQVLTHKSFGNGIKPYNEKLSAMGSKILNLYFAKFVVEK-PSQNELAINGKNLDV 120

Query: 79  VSAETCSQVARELDLASFIR--------------VSSDLRKDVCSFMTSIQADVVESLIA 124
           +      ++A  L L  F R                             + A ++ +L+ 
Sbjct: 121 LGTPIAKELAGRLSLGIFARTNNLNSTMFWKSYNYGVGFETSG---EMKVSAQMMYALVG 177

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168
           A+    G +VA  F+     ++ L +     D  + + E A   
Sbjct: 178 AVTFVHGKKVAEQFI----SEKLLGASPSIEDITSSVVEKAQQN 217


>gi|134075874|emb|CAL00253.1| unnamed protein product [Aspergillus niger]
          Length = 339

 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 52/145 (35%), Gaps = 26/145 (17%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN-------------------HFDS 65
            A+TH S     +   +RL FLG RI+ L  S  L                        +
Sbjct: 108 LAVTHKSFDQGRRGFNDRLAFLGKRIVQLQASLALVQSPSNAANSATPDAYGRVPFTHPA 167

Query: 66  AKEGELSV--RFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQADVVESL 122
               +       + L S    S++A + D+   +R           S M  + A  + ++
Sbjct: 168 LDSLDNLDYNTKSFLTSKTKLSELAHKYDMQRVVRWCPRKPNNLESSGMDLVLAHTMYAV 227

Query: 123 IAALYLDGG----IEVAGTFVDKYW 143
           I A+ L+ G     +VA  F  +Y+
Sbjct: 228 IGAISLEKGNAVANKVARAFSRRYF 252


>gi|82469826|gb|ABB77171.1| R2D2 [Drosophila melanogaster]
          Length = 311

 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            + A + LQE+        P Y       P  D  +   VE+  +  A G   SKR A+ 
Sbjct: 3   NKSAVSALQEFCARTQINLPTYSFI----PGEDGGYVCKVELLEIE-ALGNGRSKRDAKH 57

Query: 214 VAAAEVLKR 222
           +AA+ +L++
Sbjct: 58  LAASNILRK 66



 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS- 207
           +     RD   EL+++   +    P  ++  +SG    P F     ++ +        S 
Sbjct: 88  ELTNLNRDMVKELRDYCVRREMPLPSIEIVQQSGTPSAPEFVACCSVASIVR---YGKSD 144

Query: 208 -KRAAEQVAAAEVL 220
            K+ A Q AA E+L
Sbjct: 145 KKKDARQRAAIEML 158


>gi|33415073|gb|AAQ18044.1| double-stranded RNA-binding protein [Human orf virus]
          Length = 183

 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + + E+         E+  T   G DH PRFT  + IS    A     SK+ A   A
Sbjct: 109 NPVSAVNEFCMMTRRPL-EFCETRSGGEDHCPRFTCTITISEKVVAAADGASKKLARHTA 167

Query: 216 AAEVL 220
            +  L
Sbjct: 168 CSSAL 172


>gi|307197483|gb|EFN78717.1| Dosage compensation regulator [Harpegnathos saltator]
          Length = 1243

 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQV 214
           D K+   +W   K    P++ V   +GP H  RF   + ISG      G   +K+ A+  
Sbjct: 3   DIKSFFHQWC-GKNAKEPQFDV-RPTGPKHRQRFLCELRISGFDYVGAGNSTNKKDAQGN 60

Query: 215 AAAE 218
           AA +
Sbjct: 61  AAKD 64


>gi|242062442|ref|XP_002452510.1| hypothetical protein SORBIDRAFT_04g027200 [Sorghum bicolor]
 gi|241932341|gb|EES05486.1| hypothetical protein SORBIDRAFT_04g027200 [Sorghum bicolor]
          Length = 934

 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +F++ V I G    +G+  ++R A+  AA   L+  
Sbjct: 721 QFSIEVWIVGEKVGEGIGRTRREAQHKAAEMSLRNL 756


>gi|242059289|ref|XP_002458790.1| hypothetical protein SORBIDRAFT_03g040355 [Sorghum bicolor]
 gi|241930765|gb|EES03910.1| hypothetical protein SORBIDRAFT_03g040355 [Sorghum bicolor]
          Length = 718

 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
             T LQE          E++ T  +G      F+V V  S      G+  ++  A+  AA
Sbjct: 508 YVTVLQEIGQ-LCDSKVEFRSTVSNGK--SMLFSVEVLFSNEKIGIGIGKTRDEAQVQAA 564

Query: 217 AEVLKRE 223
            + L+  
Sbjct: 565 EKALQNL 571


>gi|312086019|ref|XP_003144912.1| hypothetical protein LOAG_09336 [Loa loa]
 gi|307759924|gb|EFO19158.1| hypothetical protein LOAG_09336 [Loa loa]
          Length = 637

 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 21/41 (51%)

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           P+  P F   + ++G    +G+  SK+ A+  AA + L + 
Sbjct: 232 PNKPPMFKCTLTVNGTHKFEGIGQSKKTAKSAAAEQALTKL 272


>gi|159474642|ref|XP_001695434.1| double stranded RNA-binding protein [Chlamydomonas reinhardtii]
 gi|158275917|gb|EDP01692.1| double stranded RNA-binding protein [Chlamydomonas reinhardtii]
          Length = 1520

 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 15/80 (18%)

Query: 156  DAKTELQEWAHAKFGVTPEYKVTFRSGP-----DHDPR---FTVVVEISGLAPAQGMDCS 207
            +  T+L E A          +V     P     D       + + V   G    +G D +
Sbjct: 1053 NPVTKLNELAQRN-------RVKMEIAPPPGSKDGGRTPHGWAMAVIYDGKEIGRGADKT 1105

Query: 208  KRAAEQVAAAEVLKREGIWT 227
            K+ A+++AA E L+  GI++
Sbjct: 1106 KKDAKRLAAIEALRHLGIYS 1125


>gi|66805219|ref|XP_636342.1| hypothetical protein DDB_G0289215 [Dictyostelium discoideum AX4]
 gi|60464715|gb|EAL62841.1| hypothetical protein DDB_G0289215 [Dictyostelium discoideum AX4]
          Length = 508

 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 58/163 (35%), Gaps = 13/163 (7%)

Query: 2   SALRYSTLEKRI-GYAFANRSLLEKALTHSSISHSYQESYERL---EFLGDR--ILGLLI 55
             +    +E    G  F +  LL  +    S + ++ +  + L   ++  +   I  L++
Sbjct: 129 KNILIKKIENTFNGLKFNDNQLLSNSF---STAVTFSKDNKTLITGKYFAEASKIFPLVV 185

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSI 114
              LF  + +     +    +  +S    +   + L+L  +I+ +S+ L          +
Sbjct: 186 CKYLFKRYPNVTNNYVIPINSFFISHVVIANTFQYLNLQGYIKKLSNKLPNQKYEQ---L 242

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
                 S I ++YLD G       +   + +      ++  D 
Sbjct: 243 YYVTFMSFIGSVYLDQGESAIEDKILPLFTEYLDSLSQYEFDH 285


>gi|291415218|ref|XP_002723851.1| PREDICTED: ATP-dependent RNA helicase A [Oryctolagus cuniculus]
          Length = 1260

 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213
           D K  L  W   K  +TP Y++    G  +  +F   V + G     GM  S  K+ A+ 
Sbjct: 3   DVKDFLYAWC-GKRKMTPSYEIRAV-GNKNRQKFMCEVRVEGYNY-TGMGNSTNKKDAQS 59

Query: 214 VAAAE 218
            AA +
Sbjct: 60  NAARD 64



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210
           +AK  L ++   +  +  EYK T   GPDH+  F   + I      + +       +K+ 
Sbjct: 180 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 237

Query: 211 AEQVAAAEVLKRE 223
           A Q  A  ++++ 
Sbjct: 238 AAQSCALSLVRQL 250


>gi|242032197|ref|XP_002463493.1| hypothetical protein SORBIDRAFT_01g000740 [Sorghum bicolor]
 gi|241917347|gb|EER90491.1| hypothetical protein SORBIDRAFT_01g000740 [Sorghum bicolor]
          Length = 183

 Score = 47.4 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 6  YSTLEKRIGYAFANRSLLEKALTHSSISHSY 36
           + L+ R+GYAF   SLL +A+TH+S S   
Sbjct: 41 LAALQSRVGYAFRAPSLLRRAMTHASYSREN 71


>gi|208690893|gb|ACI31222.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Saguinus
           labiatus]
          Length = 552

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 161 LQEWAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           L      K  +T  Y+   +  +GP+    F    ++       G   +K+ A+Q+AA  
Sbjct: 104 LINRIAQKERLTVNYEQCASGVNGPEG---FHYKCKVGQKEYGIGTGSTKQEAKQLAAKL 160

Query: 219 V 219
            
Sbjct: 161 A 161



 Score = 46.2 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           EL ++   +  V   YK    SGP HD RFT  V I G    +    S
Sbjct: 13  ELNKYRQKQGVVL-RYKELPNSGPPHDRRFTFQVIIDGREFPEAEGRS 59


>gi|157129657|ref|XP_001655441.1| adenosine deaminase acting on RNA (adar)-2 [Aedes aegypti]
 gi|108882042|gb|EAT46267.1| adenosine deaminase acting on RNA (adar)-2 [Aedes aegypti]
          Length = 657

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
           +      Y +  ++GP H P FT+ V + G     G   SK+ A
Sbjct: 12  ELKRNLVYNMESQTGPVHAPLFTMSVVVDGQK-FMGHGRSKKLA 54


>gi|218189405|gb|EEC71832.1| hypothetical protein OsI_04490 [Oryza sativa Indica Group]
          Length = 745

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 9/68 (13%)

Query: 159 TELQE---WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           T LQE      ++     E++ T  SG   + +F+V V  S      G+  ++  A+ +A
Sbjct: 528 TVLQEIGRLCESR----VEFRSTVSSGK--NMQFSVEVLFSNEKIGIGIGKTRDEAQVLA 581

Query: 216 AAEVLKRE 223
           A + L+  
Sbjct: 582 AEKALQNL 589



 Score = 38.1 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 19/44 (43%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
              SG   +  +    E+ G    +G+  +K  A+  AA E LK
Sbjct: 673 VRDSGSALNGEYHFQAELGGQILGRGIGLNKDFAKLQAAEEALK 716


>gi|115441141|ref|NP_001044850.1| Os01g0857000 [Oryza sativa Japonica Group]
 gi|56784824|dbj|BAD82045.1| C-terminal domain phosphatase-like protein [Oryza sativa Japonica
           Group]
 gi|56785358|dbj|BAD82316.1| C-terminal domain phosphatase-like protein [Oryza sativa Japonica
           Group]
 gi|113534381|dbj|BAF06764.1| Os01g0857000 [Oryza sativa Japonica Group]
 gi|222619564|gb|EEE55696.1| hypothetical protein OsJ_04124 [Oryza sativa Japonica Group]
          Length = 756

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 9/68 (13%)

Query: 159 TELQE---WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           T LQE      ++     E++ T  SG   + +F+V V  S      G+  ++  A+ +A
Sbjct: 528 TVLQEIGRLCESR----VEFRSTVSSGK--NMQFSVEVLFSNEKIGIGIGKTRDEAQVLA 581

Query: 216 AAEVLKRE 223
           A + L+  
Sbjct: 582 AEKALQNL 589


>gi|3021546|emb|CAA10953.1| OV20.0L [Orf virus]
          Length = 183

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + + E+         E+  T   G DH PRFT  + ISG   +     SK+ A   A
Sbjct: 109 NPVSPVNEFCMMTRRSL-EFCETRSGGEDHCPRFTCTITISGKVVSVADGASKKLARHTA 167

Query: 216 AAEVL 220
            +  L
Sbjct: 168 CSSAL 172


>gi|255628583|gb|ACU14636.1| unknown [Glycine max]
          Length = 162

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 1/44 (2%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
            K +LQ +        P Y  +   GP H  RF   V + G   
Sbjct: 120 YKNQLQSYVQKNNLSLPVYS-SEWEGPPHAMRFKCKVTVDGTNL 162


>gi|50550997|ref|XP_502972.1| YALI0D18150p [Yarrowia lipolytica]
 gi|49648840|emb|CAG81164.1| YALI0D18150p [Yarrowia lipolytica]
          Length = 397

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 5/107 (4%)

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRALKSGK---FRRDAKTELQEWAHAKFGVTPEY 175
           V++L+AA++     + A  F+D +   RA+       F +  K E+      +    PE 
Sbjct: 262 VQALVAAIHAHVSRDEALKFIDNFILSRAVDVESLFSFNQPHK-EIVRVCAREGLERPEA 320

Query: 176 KVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           ++   +G     P F V V        +G   S   A+  A+   LK
Sbjct: 321 RLMAETGRLSKAPVFVVGVFSGKHKLGEGQGASLAEAKIRASVNALK 367


>gi|12850774|dbj|BAB28848.1| unnamed protein product [Mus musculus]
          Length = 265

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213
           D K  L  W   K  +TP Y++    G  +  +F   V + G   A GM  S  K+ A+ 
Sbjct: 3   DIKNFLYAWC-GKRKMTPAYEIRAV-GNKNRQKFMCEVRVEGFNYA-GMGNSTNKKDAQS 59

Query: 214 VAAAE 218
            AA +
Sbjct: 60  NAARD 64



 Score = 42.4 bits (99), Expect = 0.052,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210
           +AK  L ++   +  +  EYK T   GPDH+  F   + I      + +       +K+ 
Sbjct: 183 NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNGSFIAEMTIYIKQLGRRIFAREHGSNKKL 240

Query: 211 AEQVAAAEVLKRE 223
           A Q  A  ++++ 
Sbjct: 241 AAQSCALSLVRQL 253


>gi|317029357|ref|XP_001391402.2| RNase III domain protein [Aspergillus niger CBS 513.88]
          Length = 258

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 48/141 (34%), Gaps = 22/141 (15%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN-------------------HFDS 65
            A+TH S     +   +RL FLG RI+ L  S  L                        +
Sbjct: 108 LAVTHKSFDQGRRGFNDRLAFLGKRIVQLQASLALVQSPSNAANSATPDAYGRVPFTHPA 167

Query: 66  AKEGELSV--RFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQADVVESL 122
               +       + L S    S++A + D+   +R           S M  + A  + ++
Sbjct: 168 LDSLDNLDYNTKSFLTSKTKLSELAHKYDMQRVVRWCPRKPNNLESSGMDLVLAHTMYAV 227

Query: 123 IAALYLDGGIEVAGTFVDKYW 143
           I A+ L+ G  VA     +  
Sbjct: 228 IGAISLEKGNAVANKVARERI 248


>gi|259490370|ref|NP_001159196.1| hypothetical protein LOC100304282 [Zea mays]
 gi|223942573|gb|ACN25370.1| unknown [Zea mays]
          Length = 286

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 20/36 (55%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +F++ V I G    +G+  ++R A++ AA   L+  
Sbjct: 72  QFSIEVWIVGEKFGEGIGRTRREAQRQAAEMSLRNL 107


>gi|9663121|emb|CAC01121.1| drbp76 alpha [Homo sapiens]
          Length = 245

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 72  LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 123


>gi|9663124|emb|CAC01124.1| ILF3 [Homo sapiens]
          Length = 441

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 68  LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 119


>gi|9663123|emb|CAC01123.1| drbp76 gamma [Homo sapiens]
          Length = 237

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 68  LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 119


>gi|9663122|emb|CAC01122.1| drbp76 [Homo sapiens]
          Length = 249

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 68  LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 119


>gi|302506567|ref|XP_003015240.1| RNAse III, putative [Arthroderma benhamiae CBS 112371]
 gi|291178812|gb|EFE34600.1| RNAse III, putative [Arthroderma benhamiae CBS 112371]
          Length = 160

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 46/127 (36%), Gaps = 6/127 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           R   +E  + Y F ++++   AL       S  +    L  +G  ++ L + T  ++   
Sbjct: 15  RTKAMEDLLEYRFKDKTIALSALNLPGRLTSI-KDNTGLAQVGKAVMELFLITDGYDK-- 71

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
                 +      ++     + +  +  L   +     +R    +      A  V++L+ 
Sbjct: 72  DMDPENIDTLLTFVLDNSKLADIGTKKGLGRCMM---GMRSSTANLTPLYTARTVQALMG 128

Query: 125 ALYLDGG 131
           A+YLD  
Sbjct: 129 AVYLDSD 135


>gi|195471419|ref|XP_002088002.1| r2d2 [Drosophila yakuba]
 gi|82469854|gb|ABB77185.1| R2D2 [Drosophila yakuba]
 gi|82469858|gb|ABB77187.1| R2D2 [Drosophila yakuba]
 gi|82469862|gb|ABB77189.1| R2D2 [Drosophila yakuba]
 gi|82469864|gb|ABB77190.1| R2D2 [Drosophila yakuba]
 gi|82469868|gb|ABB77192.1| R2D2 [Drosophila yakuba]
 gi|194174103|gb|EDW87714.1| r2d2 [Drosophila yakuba]
          Length = 321

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KR 209
              RD   EL+++        P  ++  +SG  + P F     ++ +        S  K+
Sbjct: 101 NLNRDMLRELRDYCVRHEMPLPTIEIVQQSGTPNAPEFVACCSVASIVR---YGKSDKKK 157

Query: 210 AAEQVAAAEVL 220
            A Q AA E+L
Sbjct: 158 DARQRAAIEML 168



 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            + A + LQE+        P Y+     G D    +   V++  +  A G   SKR A+ 
Sbjct: 10  NKSAVSALQEFCAKTKNTPPLYEFID--GEDGG--YVCKVDMMEVE-AYGNGRSKRDAKH 64

Query: 214 VAAAEVLKR 222
           +AA  +L++
Sbjct: 65  LAAVNILRK 73


>gi|82469856|gb|ABB77186.1| R2D2 [Drosophila yakuba]
 gi|82469866|gb|ABB77191.1| R2D2 [Drosophila yakuba]
          Length = 321

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KR 209
              RD   EL+++        P  ++  +SG  + P F     ++ +        S  K+
Sbjct: 101 NLNRDMLRELRDYCVRHEMPLPTIEIVQQSGTPNAPEFVACCSVASIVR---YGKSDKKK 157

Query: 210 AAEQVAAAEVL 220
            A Q AA E+L
Sbjct: 158 DARQRAAIEML 168



 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            + A + LQE+        P Y+     G D    +   V++  +  A G   SKR A+ 
Sbjct: 10  NKSAVSALQEFCAKTKNTPPLYEFID--GEDGG--YVCKVDMMEVE-AYGNGRSKRDAKH 64

Query: 214 VAAAEVLKR 222
           +AA  +L++
Sbjct: 65  LAAVNILRK 73


>gi|82469860|gb|ABB77188.1| R2D2 [Drosophila yakuba]
          Length = 321

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KR 209
              RD   EL+++        P  ++  +SG  + P F     ++ +        S  K+
Sbjct: 101 NLNRDMLRELRDYCVRHEMPLPTIEIVQQSGTPNAPEFVACCSVASIVR---YGKSDKKK 157

Query: 210 AAEQVAAAEVL 220
            A Q AA E+L
Sbjct: 158 DARQRAAIEML 168



 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            + A + LQE+        P Y+     G D    +   V++  +  A G   SKR A+ 
Sbjct: 10  NKSAVSALQEFCAKTKNTPPLYEFID--GEDGG--YVCKVDMMEVE-AYGNGRSKRDAKH 64

Query: 214 VAAAEVLKR 222
           +AA  +L++
Sbjct: 65  LAAVNILRK 73


>gi|332227208|ref|XP_003262783.1| PREDICTED: interferon-induced, double-stranded RNA-activated
           protein kinase [Nomascus leucogenys]
          Length = 510

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 6/58 (10%)

Query: 164 WAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           +A  K   T  Y+  V+   GP     F    ++     + G   +K+ A+Q+AA   
Sbjct: 108 FAQKKRL-TVNYEQCVSGVHGP---KGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLA 161



 Score = 42.0 bits (98), Expect = 0.071,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 17/41 (41%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            K GV   Y+    SGP HD RFT  V I      +    S
Sbjct: 19  QKQGVVLRYQELPNSGPPHDRRFTFRVIIDEREFPEAEGRS 59


>gi|170052150|ref|XP_001862091.1| ribonuclease iii [Culex quinquefasciatus]
 gi|167873116|gb|EDS36499.1| ribonuclease iii [Culex quinquefasciatus]
          Length = 135

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 4/67 (5%)

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
           L++  +SLV+    + +  +L + S+   S           T  +AD++E+ + ALY+D 
Sbjct: 59  LTLLRSSLVNNRNQAVICDDLGMTSYAVYS----NKKADLKTKDRADLLETFLGALYVDK 114

Query: 131 GIEVAGT 137
           G+  A  
Sbjct: 115 GLNTAKR 121


>gi|242209154|ref|XP_002470425.1| predicted protein [Postia placenta Mad-698-R]
 gi|220730458|gb|EED84314.1| predicted protein [Postia placenta Mad-698-R]
          Length = 1379

 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 2/89 (2%)

Query: 133  EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVT-PEYKVTFRSGPDHDPRFTV 191
            E+A +F       +   + +   D + +L  +  +  G     ++V ++SGP H P +T 
Sbjct: 1281 EMAESFRTLLHNVQNDSAAEIHSDWRMQLNNYLQSNGGSRSLTWEV-YQSGPQHQPSWTA 1339

Query: 192  VVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            V  I G+   +    S+ A ++ AA + L
Sbjct: 1340 VAYIRGIEYGKSTGTSQGAVKEEAARQTL 1368


>gi|76157448|gb|ABA40474.1| SJCHGC03811 protein [Schistosoma japonicum]
          Length = 132

 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 5/48 (10%)

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQ-----GMDCSKRAAEQVAAAEVLK 221
             +GP HD  F V V IS  +        G   S + A+++AA   L+
Sbjct: 33  KENGPYHDKVFHVNVVISHKSLNISETYFGTGSSIKKAKRMAADTALQ 80


>gi|17506341|ref|NP_491200.1| hypothetical protein D1037.1 [Caenorhabditis elegans]
 gi|13384432|gb|AAK21366.1| Hypothetical protein D1037.1 [Caenorhabditis elegans]
          Length = 786

 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 8/86 (9%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP---- 200
           Q  +      ++  + + E    +    P +     SG DH   F   + I+ +      
Sbjct: 695 QNNVPVDLSNKNPISLIMELCAKRRWNPPSFSC-EESGADHLKMFVWTIVINDVEYRPMC 753

Query: 201 AQGMDCSKRAAEQVAAAEVLKREGIW 226
                  K+  + VAA   L+  G+ 
Sbjct: 754 GS---KQKKEGKAVAAQVALQSLGVL 776


>gi|208690879|gb|ACI31215.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Nomascus
           leucogenys]
          Length = 551

 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 6/58 (10%)

Query: 164 WAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           +A  K   T  Y+  V+   GP     F    ++     + G   +K+ A+Q+AA   
Sbjct: 108 FAQKKRL-TVNYEQCVSGVHGP---KGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLA 161



 Score = 41.6 bits (97), Expect = 0.075,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 17/41 (41%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            K GV   Y+    SGP HD RFT  V I      +    S
Sbjct: 19  QKQGVVLRYQELPNSGPPHDRRFTFRVIIDEREFPEAEGRS 59


>gi|158296416|ref|XP_316826.3| AGAP000856-PA [Anopheles gambiae str. PEST]
 gi|157015286|gb|EAA12065.3| AGAP000856-PA [Anopheles gambiae str. PEST]
          Length = 469

 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 10/74 (13%)

Query: 157 AKTELQEWAHAKFGVTP--EYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQ 213
            K++L  + HA     P  +Y+V  +     D  F   +   G        + +KR AEQ
Sbjct: 391 PKSKL--YLHAVRNGLPRAQYEVQQK-----DKLFRATIRFDGQRYTSSFWEKNKRYAEQ 443

Query: 214 VAAAEVLKREGIWT 227
            AA   L + G+ +
Sbjct: 444 AAALVCLLKRGVES 457


>gi|213495740|gb|ACJ49090.1| double-stranded RNA activated protein kinase [Mustela putorius
           furo]
          Length = 78

 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 1/54 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           K    P Y+        H P FT  V +  +    G   SK+ A+  AA   + 
Sbjct: 5   KTKNIPVYECERSDVQIHVPTFTFRVTVGDIT-CTGEGTSKKLAKHRAAEAAIN 57


>gi|163860196|gb|ABY41266.1| interferon-resistance protein [Orf virus]
          Length = 183

 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + + E+         E+  T   G DH P FT  + ISG   A     SK+ A   A
Sbjct: 109 NPVSAVNEFCMMTHRSL-EFCETRSGGKDHCPLFTCTITISGKVVAAADGASKKLARHTA 167

Query: 216 AAEVL 220
            A  L
Sbjct: 168 CASAL 172


>gi|163860194|gb|ABY41265.1| interferon-resistance protein [Orf virus]
 gi|197344481|gb|ACH69627.1| interferon-resistance protein [Orf virus]
          Length = 183

 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + + E+         E+  T   G DH P FT  + ISG   A     SK+ A   A
Sbjct: 109 NPVSAVNEFCMMTHRSL-EFCETRSGGKDHCPLFTCTITISGKVVAAADGASKKLARHTA 167

Query: 216 AAEVL 220
            A  L
Sbjct: 168 CASAL 172


>gi|41057083|ref|NP_957797.1| ORF020 dsRNA-binding PKR inhibitor [Orf virus]
 gi|41018640|gb|AAR98245.1| ORF020 dsRNA-binding PKR inhibitor [Orf virus]
          Length = 183

 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + + E+         E+  T   G DH P FT  + ISG   A     SK+ A   A
Sbjct: 109 NPVSAVNEFCMMTHRSL-EFCETRSGGKDHCPLFTCTITISGKVVAAADGASKKLARHTA 167

Query: 216 AAEVL 220
            A  L
Sbjct: 168 CASAL 172


>gi|208690897|gb|ACI31224.1| eukaryotic translation initiation factor 2-alpha kinase 2
           [Lagothrix lagotricha]
          Length = 552

 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            K EL ++   +  V   Y     SGP HD RFT  V I G    +    S
Sbjct: 10  FKEELNKYRQKQGVVL-TYIELPNSGPPHDRRFTFQVIIDGREFPEAEGRS 59



 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 161 LQEWAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           L      K  +T  Y+   +  +GP+    F    ++       G   +K+ A+Q+AA  
Sbjct: 104 LINRIAQKKRLTVNYEPCASGLNGPEG---FHYKCKVGQKEYGIGTGSTKQEAKQLAAKL 160

Query: 219 V 219
            
Sbjct: 161 A 161


>gi|158341356|ref|YP_001522521.1| double-stranded RNA binding domain-containing protein
           [Acaryochloris marina MBIC11017]
 gi|158311597|gb|ABW33207.1| double-stranded RNA binding motif domain protein [Acaryochloris
           marina MBIC11017]
          Length = 148

 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 6/79 (7%)

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG 203
           ++   +   +  +   +LQE    +    P Y  + R  P+    F+  V+  GL    G
Sbjct: 71  EKPISQGDDWVENPIGQLQELCQKQQITLPRYGFSER--PNG---FSCNVQAMGLQE-NG 124

Query: 204 MDCSKRAAEQVAAAEVLKR 222
              SK+ A+  AA E+L +
Sbjct: 125 EGSSKQEAKTKAARELLSK 143


>gi|82469824|gb|ABB77170.1| R2D2 [Drosophila melanogaster]
          Length = 311

 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            + A + LQE+        P Y       P  D  +   VE+  +  A G   SKR A+ 
Sbjct: 3   NKSAVSALQEFCARTQINIPTYSFI----PGEDGGYVCKVELLEIE-ALGNGRSKRDAKH 57

Query: 214 VAAAEVLKR 222
           +AA+ +L++
Sbjct: 58  LAASNILRK 66



 Score = 45.5 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS- 207
           +     RD   EL+++   +    P  ++  +SG    P F     ++ +        S 
Sbjct: 88  ELTNLNRDMVKELRDYCVRREMPLPCIEIVQQSGTPSAPEFVACCSVASIVR---YGKSD 144

Query: 208 -KRAAEQVAAAEVL 220
            K+ A Q AA E+L
Sbjct: 145 KKKDARQRAAIEML 158


>gi|322786687|gb|EFZ13071.1| hypothetical protein SINV_16272 [Solenopsis invicta]
          Length = 86

 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 2/76 (2%)

Query: 42  RLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS 101
           RLE L D  L  ++   L+N F    EG L+     ++S         + +++   R+ +
Sbjct: 6   RLEILDDSYLKFIVLLYLYNRFPMYNEGRLTALKGKIISNWNLYYCGNKKNISG--RIKN 63

Query: 102 DLRKDVCSFMTSIQAD 117
           D    + +F+ S+  +
Sbjct: 64  DAFVPMSNFIPSLLPE 79


>gi|225424116|ref|XP_002280133.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1195

 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 10/76 (13%)

Query: 149  KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD--- 205
            +SG    ++K++LQ          P YK         + +F   VE +G+     M    
Sbjct: 1099 ESGPGGDNSKSQLQTLLTRAGYAAPTYKTKQLK----NNQFRSTVEFNGMQI---MGQPC 1151

Query: 206  CSKRAAEQVAAAEVLK 221
             +K+ AE+ AAAE L+
Sbjct: 1152 NNKKFAEKDAAAEALQ 1167


>gi|301775697|ref|XP_002923269.1| PREDICTED: tRNA-dihydrouridine synthase 2-like [Ailuropoda
           melanoleuca]
          Length = 122

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 4/66 (6%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEV 219
           L EW   +    P Y    R     D  F  VV ++     +   D SK+ AEQ AA   
Sbjct: 3   LLEWCRKEKLAQPVYDTVQR---PLDRLFCSVVTVAEQKYQSTLWDKSKKLAEQAAAIVC 59

Query: 220 LKREGI 225
           L+  G+
Sbjct: 60  LRSRGL 65


>gi|297737748|emb|CBI26949.3| unnamed protein product [Vitis vinifera]
          Length = 1181

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 10/76 (13%)

Query: 149  KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD--- 205
            +SG    ++K++LQ          P YK         + +F   VE +G+     M    
Sbjct: 1085 ESGPGGDNSKSQLQTLLTRAGYAAPTYKTKQLK----NNQFRSTVEFNGMQI---MGQPC 1137

Query: 206  CSKRAAEQVAAAEVLK 221
             +K+ AE+ AAAE L+
Sbjct: 1138 NNKKFAEKDAAAEALQ 1153


>gi|255570705|ref|XP_002526307.1| ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223534388|gb|EEF36096.1| ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 1172

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 10/76 (13%)

Query: 149  KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD--- 205
            +SG    ++K++LQ          P YK         + +F   VE +G+     M    
Sbjct: 1076 ESGPGGDNSKSQLQTLITRAGYAAPTYKTKQLK----NSQFRSTVEFNGMQI---MGQPC 1128

Query: 206  CSKRAAEQVAAAEVLK 221
             +K++AE+ AAAE L+
Sbjct: 1129 NNKKSAEKDAAAEALR 1144


>gi|170029002|ref|XP_001842383.1| ribonuclease iii [Culex quinquefasciatus]
 gi|167879433|gb|EDS42816.1| ribonuclease iii [Culex quinquefasciatus]
          Length = 192

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/160 (13%), Positives = 43/160 (26%), Gaps = 54/160 (33%)

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F   +EG L+    ++V  +  + +A++L L  F+  + +                   
Sbjct: 28  QFPDLEEGGLATYRAAIVQNQHLAVLAKKLYLEKFMLYAHES------------------ 69

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
                      ++      ++                              P  KV   +
Sbjct: 70  -----------DLCHELELRHALPDI-------------------------PICKVIECN 93

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            P     + +     G   A     S + AE  AA + L+
Sbjct: 94  SPTSTRVYMMADYFRGKRLACSNGHSTQQAEMNAAKQALE 133


>gi|195385930|ref|XP_002051657.1| GJ11132 [Drosophila virilis]
 gi|194148114|gb|EDW63812.1| GJ11132 [Drosophila virilis]
          Length = 318

 Score = 46.6 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 5/65 (7%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           + LQE         P Y+     G D    +   V +  +  A G   SKR A+ +AA  
Sbjct: 8   SALQECCAQAKTGNPVYEYID--GEDGG--YVCKVVLIDIE-AYGNGRSKRDAKHLAAGN 62

Query: 219 VLKRE 223
           ++++ 
Sbjct: 63  LMRKM 67



 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAA 217
           EL+++        P  ++  +SG  + P F     ++ +        S  K+ A Q AA 
Sbjct: 107 ELRDYCVRHDMPLPIIEIVQQSGSPNAPEFVACCSVASIKR---YGKSDKKKDARQRAAI 163

Query: 218 EVL 220
           E+L
Sbjct: 164 EML 166


>gi|321466884|gb|EFX77877.1| hypothetical protein DAPPUDRAFT_321006 [Daphnia pulex]
          Length = 131

 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA-----PAQGMDCSKRAAEQVAAAEVLKR 222
              + PEY +T  SGP H   F V +++  ++     P   +  S + A+  AA   LK+
Sbjct: 26  HHEIQPEYCLTEESGPVHQKTFVVNLKLGKISFKKQFPIVQVAQSTKKAQHAAAVLALKK 85


>gi|158341043|ref|YP_001522210.1| exoribonuclease II [Acaryochloris marina MBIC11017]
 gi|158311284|gb|ABW32896.1| exoribonuclease II [Acaryochloris marina MBIC11017]
          Length = 623

 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 26/68 (38%), Gaps = 8/68 (11%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVA 215
           + L E          E+++       H+  +     +   + +    G+  SK+ A+  A
Sbjct: 547 SLLMEICQGFQWPQAEFEIVE-----HEQGYHCECRLKVDNEVITGSGIASSKKTAKHRA 601

Query: 216 AAEVLKRE 223
           A  V+++ 
Sbjct: 602 ARPVVEQL 609


>gi|281341947|gb|EFB17531.1| hypothetical protein PANDA_002815 [Ailuropoda melanoleuca]
          Length = 371

 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 6/65 (9%)

Query: 160 ELQEWAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
            L   A  +   +  Y+       GP+   RF    +I     A G   +K+ A+Q+AA 
Sbjct: 27  RLNRLAQKEKL-SVNYEQCELKEYGPE---RFYYRCKIGQKEYAVGGGATKQDAKQMAAK 82

Query: 218 EVLKR 222
               +
Sbjct: 83  FAYDQ 87


>gi|67538476|ref|XP_663012.1| hypothetical protein AN5408.2 [Aspergillus nidulans FGSC A4]
 gi|40743378|gb|EAA62568.1| predicted protein [Aspergillus nidulans FGSC A4]
 gi|259485147|tpe|CBF81959.1| TPA: RNAse III, putative (AFU_orthologue; AFUA_3G03050)
           [Aspergillus nidulans FGSC A4]
          Length = 146

 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 45/129 (34%), Gaps = 7/129 (5%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
            L+      F N +LL  AL    +S   +E  +    LG   L L +            
Sbjct: 9   RLQYHFDLPFLNPALLSGALLAPGVS--TREGNKAFGLLGGTALQLYLQVEGLKR--EMN 64

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
             ++S   + +      +Q   +L +  +IR +             + A  +E+++ A +
Sbjct: 65  VEQISQAMSQVAGKRNLAQRGFDLGIDKWIRNNPS---QGSYISDKLMATTMEAIVGAYF 121

Query: 128 LDGGIEVAG 136
            D G   A 
Sbjct: 122 EDQGRTFAA 130


>gi|82469812|gb|ABB77164.1| R2D2 [Drosophila prostipennis]
          Length = 301

 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAA 217
           EL+++        P  ++  +SG  + P F     ++ +        S  K+ A Q AA 
Sbjct: 89  ELRDYCVRHEMPLPTIEIVQQSGTPNAPEFVACCSVASIVR---YGKSDKKKDARQRAAI 145

Query: 218 EVL 220
           E+L
Sbjct: 146 EML 148



 Score = 36.6 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                 + P Y      G D    +   V +  +  + G   SKR A+ +AAA +L++
Sbjct: 1   CAKSKNIPPTYDFID--GEDGG--YVCKVVLMEIE-SYGNGRSKRDAKHLAAANILRK 53


>gi|145530696|ref|XP_001451120.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124418764|emb|CAK83723.1| unnamed protein product [Paramecium tetraurelia]
          Length = 328

 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 82/255 (32%), Gaps = 45/255 (17%)

Query: 3   ALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES----------YERLEFLGDRILG 52
              +  LE      F    L  KA+T    +  Y              E L  LG  +  
Sbjct: 7   KQNFKVLE------FNYPELFNKAMTFKQYNQEYTARNKDNPLKQGINENLIELGSDLFD 60

Query: 53  LLISTLL-FNHFDSAKEGELS------VRFNSLVSAETCSQVARELDLASFIRVSSDLRK 105
                   F    +  +   +       +   L++ +  ++VA +L L   + VS + + 
Sbjct: 61  FYFHDFFTFQDLPNKDQNTFTSYSDIRTQKQQLLTEKNLAEVAIQLGLKEKMLVSIN-QN 119

Query: 106 DVCSFMTSIQADVVESLIAALYLD--GGIEVAGTFVDKYWKQRALKSGK----------- 152
                   IQ+  +++LI A Y D    + +    +   +K    KS +           
Sbjct: 120 SDLKNNQKIQSQSLKALIGAQYFDKQKDLNLLRKLMQPIFKDLIKKSLEKTINVQNESLN 179

Query: 153 --FRRDAKTELQEWAHAKFGVTPEYKVTFRSG----PDHDPRFTVVVEISGLAPAQGMDC 206
              + + K E  ++          YK+ F+        +   +   + I+ + P +    
Sbjct: 180 LVKQENFKGEFIDFMDKH--PEYTYKLVFQESLNLFDKNRKIYQYELLINDVLPLKSTGE 237

Query: 207 SKRAAEQVAAAEVLK 221
            K+A E     + L+
Sbjct: 238 QKKAVEAQVFKDALQ 252


>gi|82469810|gb|ABB77163.1| R2D2 [Drosophila paralutea]
          Length = 306

 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAA 217
           EL+++        P  ++  +SG  + P F     ++ +        S  K+ A Q AA 
Sbjct: 94  ELRDYCVRHEMPLPTIEIVQQSGTPNAPEFVACCSVASIVR---YGKSDKKKDARQRAAI 150

Query: 218 EVL 220
           E+L
Sbjct: 151 EML 153


>gi|308476926|ref|XP_003100678.1| CRE-ADR-1 protein [Caenorhabditis remanei]
 gi|308264696|gb|EFP08649.1| CRE-ADR-1 protein [Caenorhabditis remanei]
          Length = 1022

 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 20/62 (32%), Gaps = 5/62 (8%)

Query: 166 HAKFGVTPEYK----VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             K      Y+    V   +G      F     I       G   SK+ A+  AA   LK
Sbjct: 594 QTKQRTKIAYEFKENVPQVAGSS-AQDFYCDCVIDENDRYTGSGRSKKIAKNAAAMMALK 652

Query: 222 RE 223
           ++
Sbjct: 653 KK 654


>gi|255572781|ref|XP_002527323.1| double-stranded RNA binding protein, putative [Ricinus communis]
 gi|223533323|gb|EEF35075.1| double-stranded RNA binding protein, putative [Ricinus communis]
          Length = 219

 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 20/85 (23%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS------------GLAPAQGM 204
           AK++L E   A     P Y+     GP H   FT  V +             G+   +  
Sbjct: 130 AKSQLHEICVANNWKPPLYECCKEEGPCHQRLFTFKVIVEMIGAEYIVLECYGIPKIK-- 187

Query: 205 DCSKRAAEQVAAAEV---LKREGIW 226
              K+ A + AA      LK  G +
Sbjct: 188 ---KKTAAEHAAEGALWYLKHLGYF 209


>gi|82469822|gb|ABB77169.1| R2D2 [Drosophila takahashii]
          Length = 304

 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAA 217
           EL+++        P  ++  +SG  + P F     ++ +        S  K+ A Q AA 
Sbjct: 92  ELRDYCVRHEMPLPTIEIVQQSGTPNAPEFVACCSVASIVR---YGKSDKKKDARQRAAI 148

Query: 218 EVL 220
           E+L
Sbjct: 149 EML 151



 Score = 43.9 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 5/61 (8%)

Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           QE+        P Y      G D    +   V +  +  A G   SKR A+ +AAA +L+
Sbjct: 1   QEFCAKSKNTPPTYDFID--GEDGG--YVCKVVLMEIE-AYGNGRSKRDAKHLAAANILR 55

Query: 222 R 222
           +
Sbjct: 56  K 56


>gi|156034801|ref|XP_001585819.1| hypothetical protein SS1G_13336 [Sclerotinia sclerotiorum 1980]
 gi|154698739|gb|EDN98477.1| hypothetical protein SS1G_13336 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 250

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 40/110 (36%), Gaps = 3/110 (2%)

Query: 115 QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVT 172
            A  V+SLI A+YL  G   A TF+ ++   R L   K  +      +L      +    
Sbjct: 100 YASFVKSLIGAIYLHAGRAAAKTFIQQHILSRHLDISKLFQFSQPVRDLARLCAREDFEA 159

Query: 173 PEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           P  ++   +G     P F V +        +    S   A   A+   LK
Sbjct: 160 PVARILSETGRLSRSPVFVVGIYSGRDKLGEAPGASLDEARIRASVAGLK 209


>gi|147827068|emb|CAN66462.1| hypothetical protein VITISV_035844 [Vitis vinifera]
          Length = 1180

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 10/76 (13%)

Query: 149  KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD--- 205
            +SG    ++K++LQ          P YK         + +F   VE +G+     M    
Sbjct: 1084 ESGPGGDNSKSQLQTLLTRAGYAAPTYKTKQLK----NNQFRSTVEFNGMQI---MGQPC 1136

Query: 206  CSKRAAEQVAAAEVLK 221
             +K+ AE+ AAAE L+
Sbjct: 1137 NNKKFAEKDAAAEALQ 1152


>gi|91093789|ref|XP_967550.1| PREDICTED: similar to SON DNA-binding protein [Tribolium castaneum]
          Length = 626

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 22/47 (46%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
            +   + L E+A  K    P+Y + F  GPDH   F   V ++G+  
Sbjct: 552 NKHPVSLLGEYASKKKLGAPQYDLCFECGPDHKKNFLFKVTLNGVEY 598


>gi|159163361|pdb|1WHQ|A Chain A, Solution Structure Of The N-Terminal Dsrbd From
           Hypothetical Protein Bab28848
          Length = 99

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVA 215
           K  L  W   K  +TP Y++    G  +  +F   V + G   A GM  S  K+ A+  A
Sbjct: 9   KNFLYAWC-GKRKMTPAYEIRAV-GNKNRQKFMCEVRVEGFNYA-GMGNSTNKKDAQSNA 65

Query: 216 AAE 218
           A +
Sbjct: 66  ARD 68


>gi|148233852|ref|NP_001089264.1| hypothetical protein LOC734311 [Xenopus laevis]
 gi|58399163|gb|AAH89298.1| MGC85120 protein [Xenopus laevis]
          Length = 483

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 7/77 (9%)

Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
              + K    +A+ S +        L      +     +YK+  +SGP H P F++ V++
Sbjct: 371 RRNLRKILDCKAIDSNQ----PMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFSMSVDV 424

Query: 196 SGLAPAQGMDCSKRAAE 212
            G    +    SK+ A+
Sbjct: 425 DGTTH-EASGASKKTAK 440


>gi|19851824|gb|AAL99894.1| interferon resistance protein [goat proliferative dermatitis virus]
          Length = 183

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 1/65 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + + E+         E+  T   G DH P FT  + I G   A     SK+ A   A
Sbjct: 109 NPVSAVNEFCMMTHRSL-EFCETRSGGKDHCPLFTCTITIFGKVVAAADGASKKLARHTA 167

Query: 216 AAEVL 220
            A  L
Sbjct: 168 CASAL 172


>gi|224057014|ref|XP_002191685.1| PREDICTED: DEAH (Asp-Glu-Ala-His) box polypeptide 9 [Taeniopygia
           guttata]
          Length = 1284

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 3/67 (4%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQV 214
           D K  L  W   +  V P Y++    G      F   V + G      G   +K+ A+  
Sbjct: 3   DVKNYLYAWC-GRRRVMPAYEIRAAGGR-GRQTFLCEVRVEGFNYVGMGNSTNKKDAQSN 60

Query: 215 AAAEVLK 221
           AA + + 
Sbjct: 61  AARDFIN 67



 Score = 42.4 bits (99), Expect = 0.048,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 7/82 (8%)

Query: 147 ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-- 204
            L  G    +AK  L ++   +     EYK T   GPDH+  F   + I      + +  
Sbjct: 171 DLHGGWTLENAKARLNQFFQKEKIQE-EYKYT-EMGPDHNRSFNAEMNIYVRQLGRRIFS 228

Query: 205 ---DCSKRAAEQVAAAEVLKRE 223
                +K+ A Q  A  ++++ 
Sbjct: 229 REHGSNKKLAAQACALSLVRQL 250


>gi|195580870|ref|XP_002080257.1| GD10344 [Drosophila simulans]
 gi|194192266|gb|EDX05842.1| GD10344 [Drosophila simulans]
          Length = 1298

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213
            D K+ L ++  AK  + P+     ++GP +  RF   V +        G   +K+ AE+
Sbjct: 1   MDIKSFLYQFC-AKSQIEPKLD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58

Query: 214 VAAAE 218
            A  +
Sbjct: 59  NACRD 63


>gi|157382894|gb|ABV48882.1| maleless [Drosophila simulans]
          Length = 1298

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213
            D K+ L ++  AK  + P+     ++GP +  RF   V +        G   +K+ AE+
Sbjct: 1   MDIKSFLYQFC-AKSQIEPKLD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58

Query: 214 VAAAE 218
            A  +
Sbjct: 59  NACRD 63


>gi|157382892|gb|ABV48881.1| maleless [Drosophila simulans]
          Length = 1298

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213
            D K+ L ++  AK  + P+     ++GP +  RF   V +        G   +K+ AE+
Sbjct: 1   MDIKSFLYQFC-AKSQIEPKLD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58

Query: 214 VAAAE 218
            A  +
Sbjct: 59  NACRD 63


>gi|157382890|gb|ABV48880.1| maleless [Drosophila simulans]
          Length = 1298

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213
            D K+ L ++  AK  + P+     ++GP +  RF   V +        G   +K+ AE+
Sbjct: 1   MDIKSFLYQFC-AKSQIEPKLD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58

Query: 214 VAAAE 218
            A  +
Sbjct: 59  NACRD 63


>gi|157382888|gb|ABV48879.1| maleless [Drosophila simulans]
          Length = 1298

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213
            D K+ L ++  AK  + P+     ++GP +  RF   V +        G   +K+ AE+
Sbjct: 1   MDIKSFLYQFC-AKSQIEPKLD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58

Query: 214 VAAAE 218
            A  +
Sbjct: 59  NACRD 63


>gi|157382886|gb|ABV48878.1| maleless [Drosophila simulans]
          Length = 1298

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213
            D K+ L ++  AK  + P+     ++GP +  RF   V +        G   +K+ AE+
Sbjct: 1   MDIKSFLYQFC-AKSQIEPKLD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58

Query: 214 VAAAE 218
            A  +
Sbjct: 59  NACRD 63


>gi|157382884|gb|ABV48877.1| maleless [Drosophila simulans]
          Length = 1298

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213
            D K+ L ++  AK  + P+     ++GP +  RF   V +        G   +K+ AE+
Sbjct: 1   MDIKSFLYQFC-AKSQIEPKLD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58

Query: 214 VAAAE 218
            A  +
Sbjct: 59  NACRD 63


>gi|157382882|gb|ABV48876.1| maleless [Drosophila simulans]
          Length = 1298

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213
            D K+ L ++  AK  + P+     ++GP +  RF   V +        G   +K+ AE+
Sbjct: 1   MDIKSFLYQFC-AKSQIEPKLD-IRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEK 58

Query: 214 VAAAE 218
            A  +
Sbjct: 59  NACRD 63


>gi|225719684|gb|ACO15688.1| 39S ribosomal protein L44, mitochondrial precursor [Caligus
           clemensi]
          Length = 327

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 76/233 (32%), Gaps = 27/233 (11%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSI------------SHSYQESYERLEFLGDRILGLLI 55
            L  R+  +F +  LL +A    S               S  ES  RL   G++++   +
Sbjct: 75  ALGARLRESF-DSELLREAFRDPSFYCVPQKEKIDVSLSSAVESNVRLAESGEKLVRDHL 133

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
              L   F    E  +S     L+SA   + +A  + L   +               S  
Sbjct: 134 DAFLRESFPKVPEEGISAILEHLMSAPVLAFLALHIGLKDLLV---AEEYPPNR---SSL 187

Query: 116 ADVVESLIAALYLDGGIEV--AGTFVDKYWKQRALKSGKFRRDAK-TELQEWAHAKFG-- 170
            +   +LI A + + G +       V      + +         K T   E      G  
Sbjct: 188 VNAFHALIGA-HAESGNDSMQTQQLVVDLVAVQLVGVDLHDI-WKITNPMEMLAGYLGSE 245

Query: 171 VTPEYKVTFRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
             PE ++ + SG +     + V +        +    S   A ++AA + L+R
Sbjct: 246 GIPEPRLQWVSGRNTVLASYHVGIYSKQTLIGECTGESVGIATELAAIDALRR 298


>gi|82469806|gb|ABB77161.1| R2D2 [Drosophila orosa]
          Length = 304

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 5/80 (6%)

Query: 143 WKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
             + A +     RD   EL+++        P  ++  +SG  + P F     ++ +    
Sbjct: 73  IGELADEMTNLNRDMLKELRDYCVRNEMPLPIIEIVQQSGTPNAPEFVACCSVASIVR-- 130

Query: 203 GMDCS--KRAAEQVAAAEVL 220
               S  K+ A Q AA ++L
Sbjct: 131 -YGKSDKKKDARQRAAIDML 149


>gi|313754294|pdb|3LLH|A Chain A, Crystal Structure Of The First Dsrbd Of Tar Rna-Binding
           Protein 2
 gi|313754295|pdb|3LLH|B Chain B, Crystal Structure Of The First Dsrbd Of Tar Rna-Binding
           Protein 2
          Length = 90

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             + LQE+   + G TP Y +    G  H P FT  V +       G   S
Sbjct: 16  PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVTVGD-TSCTGQGPS 64


>gi|156379115|ref|XP_001631304.1| predicted protein [Nematostella vectensis]
 gi|156218342|gb|EDO39241.1| predicted protein [Nematostella vectensis]
          Length = 440

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQ 213
            K+ L EW   +    P Y++  R+  + D  F  +V +     A    + SKR AEQ
Sbjct: 362 PKSVLFEWTRDQKLQPPSYEMVSRTREE-DCSFKSIVIVDNTKYASTEWEKSKRHAEQ 418


>gi|169605923|ref|XP_001796382.1| hypothetical protein SNOG_05994 [Phaeosphaeria nodorum SN15]
 gi|160706874|gb|EAT87058.2| hypothetical protein SNOG_05994 [Phaeosphaeria nodorum SN15]
          Length = 247

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 5/91 (5%)

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK--TE-LQEWAHAKFGVTPEYKV 177
           +LI AL++  G  +   F   ++  R L       D +  T  L      +    P  ++
Sbjct: 107 ALIGALHIHLGSPLVKRFFRDHFLSRHLDVSTLF-DFRQPTRDLSRLCAREGFEPPVARI 165

Query: 178 TFRSGP-DHDPRFTVVVEISGLAPAQGMDCS 207
              +G     P F V V        +G   S
Sbjct: 166 ISETGRLSRHPVFVVGVYSGTDKLGEGAGSS 196


>gi|241957902|ref|XP_002421670.1| conserved hypothetical protein [Candida dubliniensis CD36]
 gi|223645015|emb|CAX39608.1| conserved hypothetical protein [Candida dubliniensis CD36]
          Length = 533

 Score = 46.2 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 24/63 (38%)

Query: 30  SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAR 89
            S + S     E L+FLG  ++   I  +    F       +    N L S  +  +  R
Sbjct: 196 RSCNESVNSKSENLQFLGKSVMSTCIGYIFEKSFLDLNPQSMLYLRNKLNSEASLGKFFR 255

Query: 90  ELD 92
           +LD
Sbjct: 256 QLD 258


>gi|198459278|ref|XP_001361331.2| GA11141 [Drosophila pseudoobscura pseudoobscura]
 gi|198136635|gb|EAL25909.2| GA11141 [Drosophila pseudoobscura pseudoobscura]
          Length = 1318

 Score = 46.2 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQ 213
            D K+ L ++  AK    P+ +V  ++GP +  RF   V +        G   +K+ AE+
Sbjct: 1   MDIKSFLFQFC-AKTRTEPKLEV-RQTGPKNRQRFLCEVRVEQTPYIGVGNSTNKKDAEK 58

Query: 214 VAAAE 218
            A  +
Sbjct: 59  NACRD 63



 Score = 36.6 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI-----SGLAPAQGMDCSKRA 210
           +AK  L  +  A      +YK T   GPDH   F   + I          A+    +K++
Sbjct: 168 NAKDRLNMYKQANNIRD-DYKYTPV-GPDHARSFMAELSIFVTALKRKVTARETGSNKKS 225

Query: 211 AEQVAAAEVLKRE 223
           A +  A  ++++ 
Sbjct: 226 ASKSCALSLVRQL 238


>gi|195155374|ref|XP_002018580.1| GL17788 [Drosophila persimilis]
 gi|194114376|gb|EDW36419.1| GL17788 [Drosophila persimilis]
          Length = 1318

 Score = 46.2 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQ 213
            D K+ L ++  AK    P+ +V  ++GP +  RF   V +        G   +K+ AE+
Sbjct: 1   MDIKSFLFQFC-AKTRTEPKLEV-RQTGPKNRQRFLCEVRVEQTPYIGVGNSTNKKDAEK 58

Query: 214 VAAAE 218
            A  +
Sbjct: 59  NACRD 63



 Score = 36.6 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI-----SGLAPAQGMDCSKRA 210
           +AK  L  +  A      +YK T   GPDH   F   + I          A+    +K++
Sbjct: 168 NAKDRLNMYKQANNIRD-DYKYTPV-GPDHARSFMAELSIFVTALKRKVTARETGSNKKS 225

Query: 211 AEQVAAAEVLKRE 223
           A +  A  ++++ 
Sbjct: 226 ASKSCALSLVRQL 238


>gi|291222158|ref|XP_002731085.1| PREDICTED: ATP-dependent RNA helicase A-like protein-like
           [Saccoglossus kowalevskii]
          Length = 1325

 Score = 46.2 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 3/64 (4%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQV 214
           D K  L  W   K  V P+Y+    +G  H  RF   V +        G   SK+ A+  
Sbjct: 3   DIKNFLYSWC-GKKKVVPQYEF-RSAGSKHRQRFMCEVRVQDYDYIGVGNSTSKKDAQAN 60

Query: 215 AAAE 218
            A +
Sbjct: 61  CARD 64



 Score = 43.1 bits (101), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI-----SGLAPAQGMDCSKRA 210
           +AK+ L ++      +  EYK T   GPDH+  F   + I          A+    +K+ 
Sbjct: 209 NAKSRLHQFMQTN-RINAEYKYTTV-GPDHNRSFVTELTIFVKQLKRNVYAREHGSNKKL 266

Query: 211 AEQVAAAEVLKRE 223
             Q  A  ++++ 
Sbjct: 267 GSQACALSLVRQL 279


>gi|68474506|ref|XP_718626.1| hypothetical protein CaO19.7468 [Candida albicans SC5314]
 gi|46440404|gb|EAK99710.1| hypothetical protein CaO19.7468 [Candida albicans SC5314]
          Length = 537

 Score = 46.2 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 11/106 (10%)

Query: 30  SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAR 89
            S + S     E L+FLG  ++   I  +    F       +    N L S  + S+  R
Sbjct: 198 RSCNESVNSKSENLQFLGKSVMSTCIGYIFEKFFSHVNPQSMLYLRNKLSSELSLSKFFR 257

Query: 90  ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
           +LD          +  +  +  T++ +  +  L+ A+  D G E  
Sbjct: 258 QLD---------PVNTNGINDETAVISLYI--LLGAMVKDFGFEEV 292


>gi|208690895|gb|ACI31223.1| eukaryotic translation initiation factor 2-alpha kinase 2
           [Callicebus moloch]
          Length = 551

 Score = 46.2 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 5/61 (8%)

Query: 161 LQEWAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           L      K  VT  Y+   +  +GP+    F    ++           +K+ A+Q+AA  
Sbjct: 103 LINRIAQKERVTVNYEQCASGVNGPEG---FHYKCKVGQKEYGIATGSTKQEAKQLAAKL 159

Query: 219 V 219
            
Sbjct: 160 A 160



 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           EL ++   +  V   YK    SGP HD RFT  V I G    +    S
Sbjct: 13  ELNKYRQKQGVVL-RYKELPNSGPPHDRRFTFQVIIDGREFPEAEGRS 59


>gi|307567933|pdb|2L33|A Chain A, Solution Nmr Structure Of Drbm 2 Domain Of Interleukin
           Enhancer- Binding Factor 3 From Homo Sapiens, Northeast
           Structural Genomics Consortium Target Hr4527e
          Length = 91

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF + VE+ G    QG   +
Sbjct: 12  LTKHGKNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FQGAGSN 63


>gi|294657725|ref|XP_460024.2| DEHA2E16610p [Debaryomyces hansenii CBS767]
 gi|199432903|emb|CAG88280.2| DEHA2E16610p [Debaryomyces hansenii]
          Length = 216

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 56/138 (40%), Gaps = 13/138 (9%)

Query: 15  YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL--- 71
           Y+ ++  L  + LTH S  +  +   E+L  +G +IL L  + L+ +   +  E  +   
Sbjct: 58  YSISD-DLALQVLTHKSFGNGIKPYNEKLSAMGAKILNLFCAKLVTDK-PTTNENAIDGK 115

Query: 72  ------SVRFNSLVSAETCSQVARELDLAS--FIRVSSDLRKDVCSFMTSIQADVVESLI 123
                 S     L    +    A+  +L S  F +  +       S    + A ++ +L+
Sbjct: 116 NLDSLGSPIAKELAGRMSLGLFAKTTNLNSIMFWKSYNHDLSFESSGEMKVSAQMMYALV 175

Query: 124 AALYLDGGIEVAGTFVDK 141
            A+    G E+A  F+ +
Sbjct: 176 GAITFTHGKEIAEAFIRE 193


>gi|209735182|gb|ACI68460.1| 39S ribosomal protein L44, mitochondrial precursor [Salmo salar]
          Length = 300

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 47/239 (19%), Positives = 80/239 (33%), Gaps = 29/239 (12%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERL----E----FLGDRI-LGL-- 53
                  R+   F+   LL+ A  +     S +E  + L    E     LGD I L    
Sbjct: 27  EVQAFSSRLKENFS-PELLKIAFVNPCYIQSEKERRQALCVDSETAALVLGDNIQLNTQG 85

Query: 54  ------LISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDV 107
                  +S      F S     +      L S      VAR L +   + +S+      
Sbjct: 86  LEFTKSFLSDWCRASFPSLPSKGVVAVVGHLTSHPVVCHVARNLAIED-LTMSAQFPV-- 142

Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR----DAKTELQE 163
              +  +      ++I AL    G E AG F+  +   + +    F      +    L E
Sbjct: 143 ---LDEVLHSTFLAVIGALQESSGAERAGLFLRDFLVTQLVGKDLFEMWSVVNPMGLLLE 199

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
               +    PE ++T  +G    P + V +       A+    +  AAE+ +A   L++
Sbjct: 200 ELSKRNVALPEPRLTRSAG-TVLPLYFVGLYSDKKIFAEAPGETVLAAEEESARVALRK 257


>gi|82469802|gb|ABB77159.1| R2D2 [Drosophila lucipennis]
          Length = 299

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAA 217
           EL+++        P  ++  +SG  + P F     ++ +        S  K+ A Q AA 
Sbjct: 88  ELRDYCVRHDMPLPSIEIVQQSGTPNAPEFVACCTVASIVR---YGKSDKKKDARQRAAI 144

Query: 218 EVL 220
           E+L
Sbjct: 145 EML 147


>gi|297600250|ref|NP_001048796.2| Os03g0121800 [Oryza sativa Japonica Group]
 gi|255674167|dbj|BAF10710.2| Os03g0121800 [Oryza sativa Japonica Group]
          Length = 165

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 6/67 (8%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA---QGMD---CSKRAAEQV 214
           L +    +    P+Y+     GP H  RF   V ++        + +     S + A+  
Sbjct: 84  LNDICLRRQWPMPQYRCVNEGGPAHAKRFVYSVRVNTSDRGWTDECIGEPMPSVKKAKDS 143

Query: 215 AAAEVLK 221
           AA  +L+
Sbjct: 144 AAVLLLE 150



 Score = 42.8 bits (100), Expect = 0.040,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 6/58 (10%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           E    +     EYK   R+G       TV V + G+      +  K+ A+++AA   L
Sbjct: 1   ERCQQQAEGL-EYKA-SRAGN----IATVEVFVDGVQIGVAQNPQKKMAQKLAARNAL 52


>gi|149247014|ref|XP_001527932.1| hypothetical protein LELG_00452 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146447886|gb|EDK42274.1| hypothetical protein LELG_00452 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 640

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 66/216 (30%), Gaps = 37/216 (17%)

Query: 16  AFANRSLLEKALTHSSIS-----------HSYQESYERLEFLGDRILGLLISTLLFNHFD 64
              ++ LL +  T                        +L   G  IL +++  LL     
Sbjct: 180 EIKDQKLLIRVTTDKLYRQLIDFVELPPMKFNNSHNSKLAMRGKNILNMILFELLDEQLQ 239

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
                 L      L S E  ++ A   +L  +++ +     DV   +  I ++V  + IA
Sbjct: 240 DEYLENLLYMQKRLTSRELLAKFAMGYNLIDWLKYNLSQEADVDEKID-IMSNVFLAYIA 298

Query: 125 ALYLDG-GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPE--------- 174
            L  +   ++    +V K +     +     +     LQ+ A A+               
Sbjct: 299 GLQEEKYSLDSIREWVKKLYAPIINELIGTEK----PLQKVAMAELESLFRLATNLNNLS 354

Query: 175 YKVTF------RSGPDHDPRFTVVVEISGLAPAQGM 204
           YK         +S P     F V + +  +    G 
Sbjct: 355 YKELDLRVTQIQSDP-----FVVQISLDNVILGLGT 385



 Score = 41.6 bits (97), Expect = 0.084,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 6/44 (13%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV------LKREGI 225
            F  V  ++G+    G+D SK+ + Q AA         L + G+
Sbjct: 594 EFHSVCLLNGVKLGYGIDRSKQRSSQKAAMAAMSNRNELAKLGV 637


>gi|17510279|ref|NP_493554.1| hypothetical protein Y54E5A.6 [Caenorhabditis elegans]
 gi|3925277|emb|CAA21662.1| C. elegans protein Y54E5A.6, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 436

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 24/70 (34%), Gaps = 5/70 (7%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVA 215
            K  L ++          Y+V  R     D RF     I       G+   + R AEQVA
Sbjct: 360 PKMVLHDYCVETKIPKATYEVVKRD----DKRFVATACIGDKKYRSGIGQPNLRMAEQVA 415

Query: 216 AAEVLKREGI 225
           A   L    I
Sbjct: 416 ALAALHGMNI 425


>gi|225470352|ref|XP_002267987.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 935

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 17/33 (51%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +F++ V  +G    +G   ++R A+  AA   L
Sbjct: 720 QFSIEVWFAGEKIGEGTGKTRREAQCQAAEASL 752



 Score = 37.0 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 13/30 (43%)

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             VEI G    +G   +   A+  AA + L
Sbjct: 853 AQVEIDGQVLGKGTGSTWDDAKMQAAEKAL 882


>gi|327277433|ref|XP_003223469.1| PREDICTED: ATP-dependent RNA helicase A-like [Anolis carolinensis]
          Length = 1253

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 3/67 (4%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQV 214
           D K  L  W   K  +TP Y++    G     +F   V ++G      G   +K+ A+  
Sbjct: 3   DVKNFLYAWC-GKRKLTPAYEIRAV-GNKTRQKFMCEVRVAGFNYIGMGNSTNKKDAQTN 60

Query: 215 AAAEVLK 221
           AA + L 
Sbjct: 61  AARDFLN 67



 Score = 42.8 bits (100), Expect = 0.035,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210
           +AK  L ++   +  +  EYK T   GPDH+  F   + I     A+ +       +K+ 
Sbjct: 174 NAKARLNQFFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYVKQLARRIFAREHGSNKKL 231

Query: 211 AEQVAAAEVLKRE 223
           A Q  A  ++++ 
Sbjct: 232 AAQSCALSLVRQL 244


>gi|156550653|ref|XP_001604965.1| PREDICTED: similar to maleless protein [Nasonia vitripennis]
          Length = 1256

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQV 214
           D K  L +W  AK    P ++V   +GP H  RF   + ++G    A G   +K+ A+  
Sbjct: 3   DIKAFLHQWC-AKNSTEPSFEV-RPTGPKHRQRFLCELRVNGYDYVAVGNSTNKKDAQGN 60

Query: 215 AAAE 218
           A+ +
Sbjct: 61  ASRD 64


>gi|195353782|ref|XP_002043382.1| GM16493 [Drosophila sechellia]
 gi|194127505|gb|EDW49548.1| GM16493 [Drosophila sechellia]
          Length = 1298

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-GLAPAQGMDCSKRAAEQ 213
            D K+ L ++  AK  + P+     ++GP +  RF   V +        G   +K+ AE+
Sbjct: 1   MDIKSFLYQFC-AKSQIEPKLD-IRQTGPKNRQRFLCEVRVQPNTYIGVGNSTNKKDAEK 58

Query: 214 VAAAE 218
            A  +
Sbjct: 59  NACRD 63


>gi|291001343|ref|XP_002683238.1| predicted protein [Naegleria gruberi]
 gi|284096867|gb|EFC50494.1| predicted protein [Naegleria gruberi]
          Length = 393

 Score = 45.8 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 27/44 (61%)

Query: 20  RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++LL +++TH+S       S ERL F+G  +L ++++ ++   +
Sbjct: 133 QTLLLRSVTHASYGTGKVRSQERLSFIGSFVLNMVLTEIISQKY 176


>gi|208690899|gb|ACI31225.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Colobus
           guereza]
          Length = 550

 Score = 45.8 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 6/58 (10%)

Query: 164 WAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            A  K   T  Y+  ++   GP+    F    ++     + G   +K+ A+Q+AA   
Sbjct: 108 IAQKKRL-TVNYEPCISGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKFA 161



 Score = 36.6 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 1/48 (2%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           +L ++   +      Y+    +GP HD RFT  V        +    S
Sbjct: 13  QLNKYRQKQGIKL-SYQELPNTGPPHDRRFTFRVISDKRQFPEAEGRS 59


>gi|195045040|ref|XP_001991926.1| GH12926 [Drosophila grimshawi]
 gi|193901684|gb|EDW00551.1| GH12926 [Drosophila grimshawi]
          Length = 460

 Score = 45.8 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 48/151 (31%), Gaps = 15/151 (9%)

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCS--FMTSIQADVVESLIAALYLDGG-IEVAGT 137
            +T  Q+     L  + R      KD  +      I ++ + +    L L    +E    
Sbjct: 303 CQTLQQICEIWHLGDYCRRRQQELKDHGNAGRANVILSECLNNKRQKLDLSEDAMEEYEG 362

Query: 138 FVDKYWKQRALKSGKFRRD---AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
            + +   + A     +  D    KT L   A       P Y+         D  F  +  
Sbjct: 363 VISR---KMAFLRSTYTSDTQLPKTVLYVHAGRLGKQPPCYETQRC-----DKLFRAICS 414

Query: 195 ISGLAPAQG-MDCSKRAAEQVAAAEVLKREG 224
             G   +    + +K+ AEQ AA   L   G
Sbjct: 415 YDGQRYSSSFWEKNKKQAEQGAALVALLELG 445


>gi|31747519|gb|AAP57628.1| interferon-inducible double-stranded RNA-dependent protein kinase
           [Homo sapiens]
          Length = 510

 Score = 45.8 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 20/41 (48%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            K GV  +Y+    SGP HD RFT  V I G    +G   S
Sbjct: 19  QKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRS 59



 Score = 44.3 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 161 LQEWAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           L      K  +T  Y+   +   GP+    F    ++     + G   +K+ A+Q+AA  
Sbjct: 104 LINRIAQKKRLTVNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKL 160

Query: 219 V 219
            
Sbjct: 161 A 161


>gi|208431829|ref|NP_001129124.1| interferon-induced, double-stranded RNA-activated protein kinase
           isoform b [Homo sapiens]
          Length = 510

 Score = 45.8 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 20/41 (48%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            K GV  +Y+    SGP HD RFT  V I G    +G   S
Sbjct: 19  QKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRS 59



 Score = 44.3 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 161 LQEWAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           L      K  +T  Y+   +   GP+    F    ++     + G   +K+ A+Q+AA  
Sbjct: 104 LINRIAQKKRLTVNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKL 160

Query: 219 V 219
            
Sbjct: 161 A 161


>gi|33871554|gb|AAH07769.1| EIF2AK2 protein [Homo sapiens]
          Length = 384

 Score = 45.8 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 20/41 (48%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            K GV  +Y+    SGP HD RFT  V I G    +G   S
Sbjct: 19  QKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRS 59



 Score = 44.3 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 161 LQEWAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           L      K  +T  Y+   +   GP+    F    ++     + G   +K+ A+Q+AA  
Sbjct: 104 LINRIAQKKRLTVNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKL 160

Query: 219 V 219
            
Sbjct: 161 A 161


>gi|219520292|gb|AAI43231.1| EIF2AK2 protein [Homo sapiens]
          Length = 546

 Score = 45.5 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 20/41 (48%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            K GV  +Y+    SGP HD RFT  V I G    +G   S
Sbjct: 19  QKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRS 59



 Score = 44.3 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 161 LQEWAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           L      K  +T  Y+   +   GP+    F    ++     + G   +K+ A+Q+AA  
Sbjct: 104 LINRIAQKKRLTVNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKL 160

Query: 219 V 219
            
Sbjct: 161 A 161


>gi|312218399|emb|CBX98345.1| hypothetical protein [Leptosphaeria maculans]
          Length = 560

 Score = 45.5 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 12/128 (9%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSI-----SHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++ RI YAF N  ++E AL   S      +    +    L   G  +L + +        
Sbjct: 5   VQSRINYAFENEQIVELAL--RSAHRDKHTGEGNDGNRGLAHYG--VLAISMVETHNVIV 60

Query: 64  DS-AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           +S     +L VR +   + +  +   R L    FI  S+  R+   S   ++  + + +L
Sbjct: 61  ESGKTLHDLHVRNHWWNTKKGRAAACRSLGFEPFIVRST--RQHYQSLSDAVLDNALSAL 118

Query: 123 IAALYLDG 130
           I A++LD 
Sbjct: 119 IGAVWLDC 126


>gi|195118471|ref|XP_002003760.1| GI21342 [Drosophila mojavensis]
 gi|193914335|gb|EDW13202.1| GI21342 [Drosophila mojavensis]
          Length = 318

 Score = 45.5 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAA 217
           EL+++        P  ++  +SG  + P F     ++ +        S  K+ A Q AA 
Sbjct: 107 ELRDYCVRHDMPLPVIEIVQQSGSPNAPEFVACCSVASIKR---YGKSDKKKDARQRAAI 163

Query: 218 EVL 220
           E+L
Sbjct: 164 EML 166



 Score = 44.3 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 5/70 (7%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            + A + LQE+       +P Y+     G D    +   V +  +  A G   SKR A+ 
Sbjct: 3   NKSAVSALQEYCAQAKTGSPVYEYID--GADVG--YLCKVVLMDIE-AFGNGRSKRDAKH 57

Query: 214 VAAAEVLKRE 223
           +AAA ++++ 
Sbjct: 58  LAAANIIRKL 67


>gi|60824577|gb|AAX36685.1| protein kinase interferon-inducible double stranded RNA dependent
           [synthetic construct]
          Length = 552

 Score = 45.5 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 20/41 (48%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            K GV  +Y+    SGP HD RFT  V I G    +G   S
Sbjct: 19  QKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRS 59



 Score = 44.3 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 161 LQEWAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           L      K  +T  Y+   +   GP+    F    ++     + G   +K+ A+Q+AA  
Sbjct: 104 LINRIAQKKRLTVNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKL 160

Query: 219 V 219
            
Sbjct: 161 A 161


>gi|208690901|gb|ACI31226.1| eukaryotic translation initiation factor 2-alpha kinase 2
           [Trachypithecus francoisi]
          Length = 550

 Score = 45.5 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 6/58 (10%)

Query: 164 WAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
            A  K   T  Y+  ++   GP+    F    ++     + G   +K+ A+Q+AA   
Sbjct: 108 IAQKKRL-TVNYEPCISGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKFA 161



 Score = 35.8 bits (82), Expect = 4.3,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 1/48 (2%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           +L ++   +      Y+    +GP HD RFT  V        +    S
Sbjct: 13  QLNKYRQKQGIKL-SYQELPNTGPPHDRRFTFRVISDRREFPEAEGRS 59


>gi|215768941|dbj|BAH01170.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 180

 Score = 45.5 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 8/68 (11%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-------DCSKRAAE 212
            L +   A     P Y      GP H   FT  V I        +       + SK+AA+
Sbjct: 104 RLHKICSATHWKEPSYDF-EEQGPSHLKLFTCKVTIHVDTFTTTIVECISEPNRSKKAAQ 162

Query: 213 QVAAAEVL 220
           + AA   L
Sbjct: 163 EHAAQGAL 170


>gi|27371006|gb|AAH40851.1| EIF2AK2 protein [Homo sapiens]
 gi|34784744|gb|AAH57805.1| EIF2AK2 protein [Homo sapiens]
          Length = 513

 Score = 45.5 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 20/41 (48%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            K GV  +Y+    SGP HD RFT  V I G    +G   S
Sbjct: 19  QKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRS 59



 Score = 44.3 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 161 LQEWAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           L      K  +T  Y+   +   GP+    F    ++     + G   +K+ A+Q+AA  
Sbjct: 104 LINRIAQKKRLTVNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKL 160

Query: 219 V 219
            
Sbjct: 161 A 161


>gi|4506103|ref|NP_002750.1| interferon-induced, double-stranded RNA-activated protein kinase
           isoform a [Homo sapiens]
 gi|208431827|ref|NP_001129123.1| interferon-induced, double-stranded RNA-activated protein kinase
           isoform a [Homo sapiens]
 gi|125527|sp|P19525|E2AK2_HUMAN RecName: Full=Interferon-induced, double-stranded RNA-activated
           protein kinase; AltName: Full=Eukaryotic translation
           initiation factor 2-alpha kinase 2; Short=eIF-2A protein
           kinase 2; AltName: Full=Interferon-inducible
           RNA-dependent protein kinase; AltName: Full=P1/eIF-2A
           protein kinase; AltName: Full=Protein kinase
           RNA-activated; Short=PKR; AltName: Full=p68 kinase
 gi|189506|gb|AAA36409.1| p68 kinase [Homo sapiens]
 gi|189782|gb|AAA18253.1| P1/eIF-2a protein kinase [Homo sapiens]
 gi|1537049|gb|AAC50768.1| interferon-inducible RNA-dependent protein kinase [Homo sapiens]
 gi|28372413|gb|AAO38055.1| protein kinase, interferon-inducible double stranded RNA dependent
           [Homo sapiens]
 gi|61354795|gb|AAX41060.1| protein kinase interferon-inducible double stranded RNA dependent
           [synthetic construct]
 gi|62739920|gb|AAH93676.1| Eukaryotic translation initiation factor 2-alpha kinase 2 [Homo
           sapiens]
 gi|62988930|gb|AAY24317.1| unknown [Homo sapiens]
 gi|75517635|gb|AAI01476.1| Eukaryotic translation initiation factor 2-alpha kinase 2 [Homo
           sapiens]
 gi|119620811|gb|EAX00406.1| eukaryotic translation initiation factor 2-alpha kinase 2, isoform
           CRA_a [Homo sapiens]
 gi|119620812|gb|EAX00407.1| eukaryotic translation initiation factor 2-alpha kinase 2, isoform
           CRA_a [Homo sapiens]
 gi|119620813|gb|EAX00408.1| eukaryotic translation initiation factor 2-alpha kinase 2, isoform
           CRA_a [Homo sapiens]
 gi|119620814|gb|EAX00409.1| eukaryotic translation initiation factor 2-alpha kinase 2, isoform
           CRA_a [Homo sapiens]
 gi|158254742|dbj|BAF83344.1| unnamed protein product [Homo sapiens]
 gi|189054047|dbj|BAG36554.1| unnamed protein product [Homo sapiens]
          Length = 551

 Score = 45.5 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 20/41 (48%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            K GV  +Y+    SGP HD RFT  V I G    +G   S
Sbjct: 19  QKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRS 59



 Score = 44.3 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 161 LQEWAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           L      K  +T  Y+   +   GP+    F    ++     + G   +K+ A+Q+AA  
Sbjct: 104 LINRIAQKKRLTVNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKL 160

Query: 219 V 219
            
Sbjct: 161 A 161


>gi|301758056|ref|XP_002914888.1| PREDICTED: interferon-induced, double-stranded RNA-activated
           protein kinase-like [Ailuropoda melanoleuca]
          Length = 539

 Score = 45.5 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 6/65 (9%)

Query: 160 ELQEWAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
            L   A  +   +  Y+       GP+   RF    +I     A G   +K+ A+Q+AA 
Sbjct: 107 RLNRLAQKEKL-SVNYEQCELKEYGPE---RFYYRCKIGQKEYAVGGGATKQDAKQMAAK 162

Query: 218 EVLKR 222
               +
Sbjct: 163 FAYDQ 167



 Score = 42.4 bits (99), Expect = 0.044,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205
           EL  +      V   Y+++   GP H+ +FT  V I+    ++   
Sbjct: 13  ELNTYCQKHSLVLKYYELSKE-GPAHNLKFTFQVIINERKYSEAEG 57


>gi|61364980|gb|AAX42635.1| protein kinase interferon-inducible double stranded RNA dependent
           [synthetic construct]
          Length = 552

 Score = 45.5 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 20/41 (48%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            K GV  +Y+    SGP HD RFT  V I G    +G   S
Sbjct: 19  QKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRS 59



 Score = 44.3 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 161 LQEWAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           L      K  +T  Y+   +   GP+    F    ++     + G   +K+ A+Q+AA  
Sbjct: 104 LINRIAQKKRLTVNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKL 160

Query: 219 V 219
            
Sbjct: 161 A 161


>gi|60812550|gb|AAX36216.1| protein kinase interferon-inducible double stranded RNA dependent
           [synthetic construct]
          Length = 551

 Score = 45.5 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 20/41 (48%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            K GV  +Y+    SGP HD RFT  V I G    +G   S
Sbjct: 19  QKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRS 59



 Score = 44.3 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 161 LQEWAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           L      K  +T  Y+   +   GP+    F    ++     + G   +K+ A+Q+AA  
Sbjct: 104 LINRIAQKKRLTVNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKL 160

Query: 219 V 219
            
Sbjct: 161 A 161


>gi|238879557|gb|EEQ43195.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 537

 Score = 45.5 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 11/104 (10%)

Query: 30  SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAR 89
            S + S     E L+FLG  ++   I  +    F       +    N L S  + S+  R
Sbjct: 198 RSCNESVNSKSENLQFLGKSVMSTCIGYIFEKSFSHVNPQSMLYLRNKLSSELSLSKFFR 257

Query: 90  ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
           +LD          +  +  +  T++ +  +  L+ A+  D G E
Sbjct: 258 QLD---------PVNTNGINDETAVISLYI--LLGAMVKDFGFE 290


>gi|225382104|gb|ACN89264.1| putative dicer-like protein [Thalassiosira pseudonana]
          Length = 1276

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 42/114 (36%), Gaps = 20/114 (17%)

Query: 21  SLLEKALTHSSISHSYQESYERLEFLGDRILGLLIS-TLLFNHFDSAKEGE--LSVRFNS 77
            LL  A   +S S S   + ERLE LGD +L   I   +      ++ E E  L +  + 
Sbjct: 847 RLLNLA---TSASGSSVNTSERLESLGDAVLLFFIVLNVFAAKSPASDEVEMVLDLFRSV 903

Query: 78  LV---SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           +      +   +    L +   +                  +DV ES++ A Y+
Sbjct: 904 ITMQGRNKVLVRAGMRLGMHVLLDC-----------KQKKLSDVFESILGAAYI 946



 Score = 39.3 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 28/57 (49%)

Query: 41   ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
            E+L ++G+  L L +   +++H   A  G++      ++S ++ + +  +  L   +
Sbjct: 1078 EKLYYVGNSALQLKLVEEIYHHHTEATSGDIHFMKVVMLSDDSMAYILVKNGLHKCL 1134


>gi|82469814|gb|ABB77165.1| R2D2 [Drosophila rufa]
          Length = 305

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 5/74 (6%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS- 207
           +     RD   EL+++        P  ++  +SG  + P F     ++ +        S 
Sbjct: 81  EMTNLNRDMLKELRDYCVRHEMPLPTIEIVQQSGTPNAPEFVACCSVASIVR---YGKSD 137

Query: 208 -KRAAEQVAAAEVL 220
            K+ A Q AA  +L
Sbjct: 138 KKKDARQRAAIAML 151



 Score = 36.6 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 5/58 (8%)

Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                   P Y+     G D    +   V +  +  A G   SKR A+ +AA  +L++
Sbjct: 1   CAKSKNCPPTYEFID--GEDGG--YVCKVTMLEIE-AYGNGRSKRDAKHLAAGNILRK 53


>gi|47226767|emb|CAG06609.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 653

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 45/145 (31%), Gaps = 13/145 (8%)

Query: 50  ILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCS 109
           +L   +   L N    A   +      + VS      + R++      R    L      
Sbjct: 521 VLRSSVHEELSNSGPQAWLKKDQFLRAAPVSGGVGELLMRKMGW----RTGEGL----GR 572

Query: 110 FMTSIQADVVESLIAALYLDG-GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAK 168
                    VE +I    +D  G+   G    K      +      +   + L E  + +
Sbjct: 573 NRE----GTVEPIIIDFKVDRKGLVAEGEKAQKQTGGLVVTKDLMGKHPVSALIELCNKQ 628

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVV 193
             + PE+ +   SGPDH   F   V
Sbjct: 629 RILQPEFVMVHHSGPDHRKNFLFKV 653


>gi|281204426|gb|EFA78621.1| hypothetical protein PPL_08076 [Polysphondylium pallidum PN500]
          Length = 354

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 11/123 (8%)

Query: 38  ESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
           +S+E  EF GD IL    S      +  A     ++  +   S +T +           +
Sbjct: 88  DSFELFEFSGDSILAKEFSDR-TTKYPGASPYICTLFKSHGCSNDTLTF------FYHLL 140

Query: 98  RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYW--KQRALKSGKFRR 155
            +SS L  DV   +   QAD++E++I  LY      +A + ++ +     +         
Sbjct: 141 HISSKLL-DVPPTIPKKQADIMEAMIHELYHAQN-NIARSTLEMFILVLLQYTNITFHHS 198

Query: 156 DAK 158
           D K
Sbjct: 199 DPK 201


>gi|326918955|ref|XP_003205750.1| PREDICTED: adenosine deaminase domain-containing protein 1-like
           [Meleagris gallopavo]
          Length = 491

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
           D +         K   +  + L  +A  ++ +  ++K T  +G      F +   + G+ 
Sbjct: 18  DAWLADLVAGYQKGAVNPVSALHRFAQ-RYSMQLDFKETGVAGHTISSYFGISAVLDGVY 76

Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223
              G+  +K+ ++Q AA   L   
Sbjct: 77  YKTGLGRNKKESKQCAAKLALDEL 100


>gi|309360573|emb|CAP31071.2| hypothetical protein CBG_12024 [Caenorhabditis briggsae AF16]
          Length = 806

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 8/86 (9%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP---- 200
           Q  +      ++  + + E    +    P +     SG DH   F   V I+ +      
Sbjct: 715 QNNVPIDLSTKNPISLVMELCAKRRWNAPSFTC-EESGADHSKMFIWTVVINNVQYRPMC 773

Query: 201 AQGMDCSKRAAEQVAAAEVLKREGIW 226
                  K+  + VA    L+  G+ 
Sbjct: 774 GS---KQKKEGKAVACQVALQSLGVL 796


>gi|116196242|ref|XP_001223933.1| hypothetical protein CHGG_04719 [Chaetomium globosum CBS 148.51]
 gi|88180632|gb|EAQ88100.1| hypothetical protein CHGG_04719 [Chaetomium globosum CBS 148.51]
          Length = 221

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 53/181 (29%), Gaps = 8/181 (4%)

Query: 47  GDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD 106
           G+ ++G              K        + +V  +   +V    D    +R+ +D    
Sbjct: 5   GNAVVG--FGYRRAEADGLKKHKWRHGMSSRVVFDDDFGEVVDTEDAKDELRLRADAEYG 62

Query: 107 VCSFM---TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKF--RRDAKTEL 161
                       A    ++  A+Y   G E A  F+  +   R L   K    +    EL
Sbjct: 63  NEYTRSLAEKAYATCARAVTGAIYAHAGRERAKAFIGAHVLSRTLDLSKLFAFKKPTREL 122

Query: 162 QEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                 +    P  ++   +G     P + V +        +    S   A   AA   L
Sbjct: 123 SLLCAREDFEPPVARLLSETGRLSRTPVYVVGIFSGKDKLGEAAGSSLEYARTGAAMNAL 182

Query: 221 K 221
           K
Sbjct: 183 K 183


>gi|198420373|ref|XP_002122509.1| PREDICTED: similar to dsRNA adenosine deaminase [Ciona
           intestinalis]
          Length = 517

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           R+  + + E+A +K            SGP H   F+ V  I       G+  +K+ ++  
Sbjct: 57  RNPISVINEYAQSKQLS--VKCEVSSSGPSHKQMFSTVFTIGDDVFPAGIGSNKKESKVK 114

Query: 215 AAAEVLKRE 223
           +A  VL + 
Sbjct: 115 SAEIVLHQL 123


>gi|116283356|gb|AAH22314.1| EIF2AK2 protein [Homo sapiens]
          Length = 363

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 20/41 (48%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            K GV  +Y+    SGP HD RFT  V I G    +G   S
Sbjct: 19  QKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRS 59



 Score = 43.9 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 161 LQEWAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           L      K  +T  Y+   +   GP+    F    ++     + G   +K+ A+Q+AA  
Sbjct: 104 LINRIAQKKRLTVNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKL 160

Query: 219 V 219
            
Sbjct: 161 A 161


>gi|114576952|ref|XP_001166509.1| PREDICTED: eukaryotic translation initiation factor 2-alpha kinase
           2 isoform 4 [Pan troglodytes]
          Length = 552

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 20/41 (48%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            K GV  +Y+    SGP HD RFT  V I G    +G   S
Sbjct: 19  QKQGVVLKYQELPNSGPPHDRRFTFRVIIDGREFPEGEGRS 59



 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 161 LQEWAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           L      K  +T  Y+   +   GP+    F    ++     + G   +K+ A+Q+AA  
Sbjct: 104 LINRIAQKKRLTVNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTSSTKQEAKQLAAKL 160

Query: 219 V 219
            
Sbjct: 161 A 161


>gi|159162913|pdb|1QU6|A Chain A, Structure Of The Double-Stranded Rna-Binding Domain Of The
           Protein Kinase Pkr Reveals The Molecular Basis Of Its
           Dsrna-Mediated Activation
          Length = 179

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 20/41 (48%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            K GV  +Y+    SGP HD RFT  V I G    +G   S
Sbjct: 24  QKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRS 64



 Score = 43.9 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 161 LQEWAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           L      K  +T  Y+   +   GP+    F    ++     + G   +K+ A+Q+AA  
Sbjct: 109 LINRIAQKKRLTVNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKL 165

Query: 219 V 219
            
Sbjct: 166 A 166


>gi|222537768|ref|NP_001138509.1| interferon-induced, double-stranded RNA-activated protein kinase
           [Pan troglodytes]
 gi|208690875|gb|ACI31213.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Pan
           paniscus]
 gi|208690877|gb|ACI31214.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Pan
           troglodytes]
          Length = 552

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 20/41 (48%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            K GV  +Y+    SGP HD RFT  V I G    +G   S
Sbjct: 19  QKQGVVLKYQELPNSGPPHDRRFTFRVIIDGREFPEGEGRS 59



 Score = 39.7 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 161 LQEWAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           L      K  +T  Y+   +   GP+    F    ++     + G   +K+ A+Q+AA  
Sbjct: 104 LINRIAQKKRLTVNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTSSTKQEAKQLAAKL 160

Query: 219 V 219
            
Sbjct: 161 A 161


>gi|17863006|gb|AAL39980.1| SD08006p [Drosophila melanogaster]
          Length = 460

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 47/152 (30%), Gaps = 17/152 (11%)

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI-------AALYLDGGIE 133
            +T  Q+    +L  + R      K + +     + +  E+L        AA+ +    +
Sbjct: 303 CQTLQQICEIWELGDYCRRKQRELKTMGNSG-RAEVEPPEALAKRQKLEDAAIAITDEYD 361

Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
                   + +             KT+L   A       P Y+         D  F  + 
Sbjct: 362 GIICRHMPFLRSTYPSDNHL---PKTQLYVHAVKTGKSPPAYETQQC-----DKLFRSIC 413

Query: 194 EISGLAPAQG-MDCSKRAAEQVAAAEVLKREG 224
              G   +    + +K+ AEQ AA   L   G
Sbjct: 414 TYDGQRFSSSFWEKNKKQAEQGAALVALLHLG 445


>gi|82469842|gb|ABB77179.1| R2D2 [Drosophila simulans]
          Length = 311

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            + A + L E+        P Y   F  G D    F   VE+  L  A G   SKR A+ 
Sbjct: 3   NKSAVSALHEFCAKTNNTPPTYN--FIKGEDGG--FVCKVELLELE-ALGNGRSKRDAKH 57

Query: 214 VAAAEVLKR 222
           +AAA ++++
Sbjct: 58  LAAANIMRK 66



 Score = 43.1 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 5/74 (6%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS- 207
           +     RD   EL+++        P  +V  +SG    P F     ++ +        S 
Sbjct: 88  EMTNLNRDMLKELRDYCVRHDMPLPCIEVVQQSGTPSAPEFVACCSVASIVR---YGKSD 144

Query: 208 -KRAAEQVAAAEVL 220
            K+ A Q AA E+L
Sbjct: 145 KKKDARQRAAIEML 158


>gi|45549423|ref|NP_572950.2| CG1434 [Drosophila melanogaster]
 gi|45446950|gb|AAF48360.2| CG1434 [Drosophila melanogaster]
 gi|162944734|gb|ABY20436.1| GH10289p [Drosophila melanogaster]
          Length = 473

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 47/152 (30%), Gaps = 17/152 (11%)

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI-------AALYLDGGIE 133
            +T  Q+    +L  + R      K + +     + +  E+L        AA+ +    +
Sbjct: 316 CQTLQQICEIWELGDYCRRKQRELKTMGNSG-RAEVEPPEALAKRQKLEDAAIAITDEYD 374

Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
                   + +             KT+L   A       P Y+         D  F  + 
Sbjct: 375 GIICRHMPFLRSTYPSDNHL---PKTQLYVHAVKTGKSPPAYETQQC-----DKLFRSIC 426

Query: 194 EISGLAPAQG-MDCSKRAAEQVAAAEVLKREG 224
              G   +    + +K+ AEQ AA   L   G
Sbjct: 427 TYDGQRFSSSFWEKNKKQAEQGAALVALLHLG 458


>gi|195448673|ref|XP_002071763.1| GK10156 [Drosophila willistoni]
 gi|194167848|gb|EDW82749.1| GK10156 [Drosophila willistoni]
          Length = 458

 Score = 45.5 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 23/69 (33%), Gaps = 6/69 (8%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVA 215
            KT L   A       P Y+         D  F  V    G   +    + +K+ AEQ A
Sbjct: 380 PKTRLYVHAGRLSKSPPAYETKQC-----DKLFRAVCLFDGQRFSSTFWEKNKKQAEQGA 434

Query: 216 AAEVLKREG 224
           A   L   G
Sbjct: 435 ALVALLHMG 443


>gi|242032961|ref|XP_002463875.1| hypothetical protein SORBIDRAFT_01g008080 [Sorghum bicolor]
 gi|241917729|gb|EER90873.1| hypothetical protein SORBIDRAFT_01g008080 [Sorghum bicolor]
          Length = 1148

 Score = 45.1 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 10/93 (10%)

Query: 131  GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR-- 188
            G E +   +            K   + K+ LQ          P+YK        H     
Sbjct: 1018 GRETSRARLRNPEDDSKSNIIKDGMNPKSLLQTLLMRAGHTPPKYKTK------HLKTNE 1071

Query: 189  FTVVVEISGLAPAQGM-DCSKRAAEQVAAAEVL 220
            F  +VE  G+    G    +K+ AE+ AA E L
Sbjct: 1072 FRAMVEFKGMQ-FVGKPKRNKQLAERDAAIEAL 1103


>gi|327304857|ref|XP_003237120.1| hypothetical protein TERG_01842 [Trichophyton rubrum CBS 118892]
 gi|326460118|gb|EGD85571.1| hypothetical protein TERG_01842 [Trichophyton rubrum CBS 118892]
          Length = 161

 Score = 45.1 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 47/127 (37%), Gaps = 6/127 (4%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           R   +E  + Y F +++L   AL       S  +    L  +G  ++ L + T  ++   
Sbjct: 16  RAKAMEDLLEYRFKDKTLPLSALNLPGRLTSI-KDNTGLAQVGKAVMELFLITDGYDK-- 72

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
                 ++     ++     + V  +  L   +     ++    S      A  V++L+ 
Sbjct: 73  DMDPENINTLLTYILDNSKLADVGTKKGLGRCMM---GMQSGTTSLTPLYTARTVQALMG 129

Query: 125 ALYLDGG 131
           A+Y+D  
Sbjct: 130 AVYIDSD 136


>gi|170572085|ref|XP_001891977.1| dihydrouridine synthase domain containing protein [Brugia malayi]
 gi|158603180|gb|EDP39210.1| dihydrouridine synthase domain containing protein [Brugia malayi]
          Length = 437

 Score = 45.1 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 4/93 (4%)

Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
           E   +F+D  +  + L+        K  L  +        P Y+   R     D R+  +
Sbjct: 337 ETGISFIDLTFPPKRLRDRSGAVTPKCILNAFCDENGINRPIYQCKLRIT---DKRYEAI 393

Query: 193 VEISGLAPAQGMD-CSKRAAEQVAAAEVLKREG 224
           VEI     +  +   +K+ AEQVAA   L   G
Sbjct: 394 VEIDHKKFSSRIGQPNKKMAEQVAALAALIGLG 426


>gi|91084515|ref|XP_967225.1| PREDICTED: similar to DISCO Interacting Protein 1 CG17686-PC
           isoform 1 [Tribolium castaneum]
 gi|270012651|gb|EFA09099.1| hypothetical protein TcasGA2_TC015220 [Tribolium castaneum]
          Length = 359

 Score = 45.1 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            Y VT    P    ++T  V + G+    G   SK  A+ +AA   LK
Sbjct: 157 TYTVTDVPQPPEMNQYTATVLVDGVTH-IGHGRSKMEAKSMAAENALK 203



 Score = 41.2 bits (96), Expect = 0.097,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR-EGI 225
           +++   R+G   +  FT    + G +   G   +K++A+++AA  V  +  GI
Sbjct: 297 QFEELGRTGNPPNVIFTFKCTVGGQS-FNGTGPNKKSAKKMAAFAVCHKMLGI 348


>gi|82469846|gb|ABB77181.1| R2D2 [Drosophila simulans]
          Length = 311

 Score = 45.1 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            + A + L E+        P Y   F  G D    F   VE+  L  A G   SKR A+ 
Sbjct: 3   NKSAVSALHEFCAKTNNTPPTYN--FIKGEDGG--FVCKVELLELE-ALGNGRSKRDAKH 57

Query: 214 VAAAEVLKR 222
           +AAA ++++
Sbjct: 58  LAAANIMRK 66



 Score = 43.1 bits (101), Expect = 0.029,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 5/74 (6%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS- 207
           +     RD   EL+++        P  +V  +SG    P F     ++ +        S 
Sbjct: 88  EMTNLNRDMLKELRDYCVRHDMPLPCIEVVQQSGTPSAPEFVACCSVASIVR---YGKSD 144

Query: 208 -KRAAEQVAAAEVL 220
            K+ A Q AA E+L
Sbjct: 145 KKKDARQRAAIEML 158


>gi|168048900|ref|XP_001776903.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671759|gb|EDQ58306.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1152

 Score = 45.1 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 5/52 (9%)

Query: 177 VTFRSGPDHDPRFTVVVEI-----SGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
               SGPDH   F   + +       +  A G   +K  AE+        + 
Sbjct: 152 TLRSSGPDHAKTFVAELTVPLRNKGEVFVAVGQGPNKAEAERACCTAACAKL 203


>gi|156368791|ref|XP_001627875.1| predicted protein [Nematostella vectensis]
 gi|156214837|gb|EDO35812.1| predicted protein [Nematostella vectensis]
          Length = 803

 Score = 45.1 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 27/74 (36%), Gaps = 9/74 (12%)

Query: 156 DAKTELQEWAHAKFGV-TPEYKVTFRSGPDHDPRFTVVVEI-----SGLAPAQGMDCSKR 209
           ++K+ L ++          +Y      GPDH+  F   + +                +K+
Sbjct: 30  NSKSRLHQFLQQNRLPAEFKY---GAVGPDHNRAFKCELSVFVKSHRRNIHGTANASTKK 86

Query: 210 AAEQVAAAEVLKRE 223
            A Q  A  ++++ 
Sbjct: 87  QAAQSCALSLVRQL 100


>gi|82469848|gb|ABB77182.1| R2D2 [Drosophila simulans]
 gi|82469852|gb|ABB77184.1| R2D2 [Drosophila simulans]
          Length = 311

 Score = 45.1 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            + A + L E+        P Y   F  G D    F   VE+  L  A G   SKR A+ 
Sbjct: 3   NKSAVSALHEFCAKTNNTPPTYN--FIKGEDGG--FVCKVELLELE-ALGNGRSKRDAKH 57

Query: 214 VAAAEVLKR 222
           +AAA ++++
Sbjct: 58  LAAANIMRK 66



 Score = 43.1 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 5/74 (6%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS- 207
           +     RD   EL+++        P  +V  +SG    P F     ++ +        S 
Sbjct: 88  EMTNLNRDMLKELRDYCVRHDMPLPCIEVVQQSGTPSAPEFVACCSVASIVR---YGKSD 144

Query: 208 -KRAAEQVAAAEVL 220
            K+ A Q AA E+L
Sbjct: 145 KKKDARQRAAIEML 158


>gi|195352556|ref|XP_002042778.1| GM17665 [Drosophila sechellia]
 gi|194126809|gb|EDW48852.1| GM17665 [Drosophila sechellia]
          Length = 473

 Score = 45.1 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 47/152 (30%), Gaps = 17/152 (11%)

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLI-------AALYLDGGIE 133
            +T  Q+    +L  + R      + + +     + +  ESL        AA+ +  G E
Sbjct: 316 CQTLQQICEIWELGEYCRRKQRELRTMGNSG-RAEVEPPESLAKRQKLEDAAIDIPDGYE 374

Query: 134 VAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
                   + +             KT+L   A       P Y+         D  F  + 
Sbjct: 375 GIICRHMPFLRSTYPSDNHL---PKTQLYVHAVKAGKSPPAYETQQC-----DKLFRSIC 426

Query: 194 EISGLAPAQG-MDCSKRAAEQVAAAEVLKREG 224
                  +    + +K+ AEQ AA   L   G
Sbjct: 427 TYDDQRFSSSYWEKNKKQAEQGAALVALLHLG 458


>gi|82469844|gb|ABB77180.1| R2D2 [Drosophila simulans]
          Length = 311

 Score = 45.1 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            + A + L E+        P Y   F  G D    F   VE+  L  A G   SKR A+ 
Sbjct: 3   NKSAVSALHEFCAKTNNTPPTYN--FIKGEDGG--FVCKVELLELE-ALGNGRSKRDAKH 57

Query: 214 VAAAEVLKR 222
           +AAA ++++
Sbjct: 58  LAAANIMRK 66



 Score = 43.1 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 5/74 (6%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS- 207
           +     RD   EL+++        P  +V  +SG    P F     ++ +        S 
Sbjct: 88  EMTNLNRDMLKELRDYCVRHDMPLPCIEVVQQSGTPSAPEFVACCSVASIVR---YGKSD 144

Query: 208 -KRAAEQVAAAEVL 220
            K+ A Q AA E+L
Sbjct: 145 KKKDARQRAAIEML 158


>gi|66825203|ref|XP_645956.1| hypothetical protein DDB_G0269426 [Dictyostelium discoideum AX4]
 gi|60474126|gb|EAL72063.1| hypothetical protein DDB_G0269426 [Dictyostelium discoideum AX4]
          Length = 733

 Score = 45.1 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
           K +L E+   K    P Y  T   G +H+  F  +V ++G   
Sbjct: 10  KVQLNEFLQKKKQPIPIYH-TESKGSEHNKDFKSIVVVNGKQI 51


>gi|268560900|ref|XP_002646317.1| Hypothetical protein CBG12024 [Caenorhabditis briggsae]
          Length = 762

 Score = 45.1 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 8/86 (9%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP---- 200
           Q  +      ++  + + E    +    P +     SG DH   F   V I+ +      
Sbjct: 671 QNNVPIDLSTKNPISLVMELCAKRRWNAPSFTC-EESGADHSKMFIWTVVINNVQYRPMC 729

Query: 201 AQGMDCSKRAAEQVAAAEVLKREGIW 226
                  K+  + VA    L+  G+ 
Sbjct: 730 GS---KQKKEGKAVACQVALQSLGVL 752


>gi|255564369|ref|XP_002523181.1| conserved hypothetical protein [Ricinus communis]
 gi|223537588|gb|EEF39212.1| conserved hypothetical protein [Ricinus communis]
          Length = 970

 Score = 45.1 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 178 TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
             + GP     +   +E+  +    G    K+ AEQ AA   L++ GI
Sbjct: 50  IPQKGPS---LYRCSLELPEIFVVSGTFKKKKDAEQCAAEMALEKLGI 94


>gi|198474406|ref|XP_002132686.1| GA25965 [Drosophila pseudoobscura pseudoobscura]
 gi|198138378|gb|EDY70088.1| GA25965 [Drosophila pseudoobscura pseudoobscura]
          Length = 398

 Score = 45.1 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 11/74 (14%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            ++  + L E+       TP+Y+         +  F+  VE+  +    G   SK++A  
Sbjct: 3   DQNFVSYLVEFCVKLKLNTPKYRYVTEE----NREFSCNVELQDIQ-GYGRARSKQSAAH 57

Query: 214 VAAAEVLKREGIWT 227
           VAA        +WT
Sbjct: 58  VAARN------VWT 65


>gi|294891381|ref|XP_002773551.1| hypothetical protein Pmar_PMAR029530 [Perkinsus marinus ATCC 50983]
 gi|239878723|gb|EER05367.1| hypothetical protein Pmar_PMAR029530 [Perkinsus marinus ATCC 50983]
          Length = 536

 Score = 45.1 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 11/82 (13%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPE-----YKVTFRSGPDHDPRFTVVVEIS---GLAP 200
           +S ++R DAK+ L      K G         Y      G D+   F  +V +    G   
Sbjct: 446 ESSRYRMDAKSRLNHALQRKLGRPVTRMDVTYHTELVQGKDN--LFRSIVRLGCLPGDRT 503

Query: 201 AQGMDC-SKRAAEQVAAAEVLK 221
            +G     K +AEQ AAA  L+
Sbjct: 504 FEGFGAVGKGSAEQDAAARALE 525


>gi|82469840|gb|ABB77178.1| R2D2 [Drosophila simulans]
          Length = 311

 Score = 45.1 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            + A + L E+        P Y   F  G D    F   VE+  L  A G   SKR A+ 
Sbjct: 3   NKSAVSALHEFCAKTNNTPPTYN--FIKGEDGG--FVCKVELLELE-ALGNGRSKRDAKH 57

Query: 214 VAAAEVLKR 222
           +AAA ++++
Sbjct: 58  LAAANIMRK 66



 Score = 43.9 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 5/74 (6%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS- 207
           +     RD   EL+++        P  +V  +SG    P F     ++ +        S 
Sbjct: 88  EMTNLNRDMLKELRDYCVRHDMPLPXIEVVQQSGTPSAPEFVACCSVASIVR---YGKSD 144

Query: 208 -KRAAEQVAAAEVL 220
            K+ A Q AA E+L
Sbjct: 145 KKKDARQRAAIEML 158


>gi|308470958|ref|XP_003097711.1| hypothetical protein CRE_14205 [Caenorhabditis remanei]
 gi|308239829|gb|EFO83781.1| hypothetical protein CRE_14205 [Caenorhabditis remanei]
          Length = 436

 Score = 45.1 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 25/70 (35%), Gaps = 5/70 (7%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVA 215
            K  L ++          Y+VT R     D RF     I       G+   + R AEQVA
Sbjct: 360 PKMALHDYCVETKTPKATYEVTKRD----DKRFIATATIGEKKFRSGIGQPNVRMAEQVA 415

Query: 216 AAEVLKREGI 225
           A   L    I
Sbjct: 416 ALAALHGMNI 425


>gi|281207203|gb|EFA81386.1| hypothetical protein PPL_05371 [Polysphondylium pallidum PN500]
          Length = 385

 Score = 45.1 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 14/142 (9%)

Query: 12  RIGYAFANRSLLEKALTHSSISHSYQESY---ERLEFLGDRILGLLISTLLFNHFDSAKE 68
           +    F + +++ +A+  S   ++ Q SY    R  FLG+ I    I   L N     + 
Sbjct: 139 KFNIQFKD-NIIPQAIIESLSQNTKQYSYSHLNRYFFLGNVIYNTNILEQLKNSGIEHET 197

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE-----SLI 123
              +   + +  +   S+    + L+ FI   S       S   S              +
Sbjct: 198 K--AEYKSIIKGSYFLSKRCEIIGLSEFI---SGSMPSDQSKFKSFYLKHFHYRSLMQFV 252

Query: 124 AALYLDGGIEVAGTFVDKYWKQ 145
            ALY + G+ VA  F+DK+  Q
Sbjct: 253 GALYQEQGLNVANEFIDKFILQ 274


>gi|301615908|ref|XP_002937403.1| PREDICTED: ATP-dependent RNA helicase A-like protein [Xenopus
           (Silurana) tropicalis]
          Length = 1257

 Score = 45.1 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 5/65 (7%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQ 213
           D K  L  W   K  +TP Y+    +G     +F   V + G     GM  S  K+ A+ 
Sbjct: 3   DIKNFLYAWC-GKKKLTPNYE-IRAAGNKMRQKFMCEVRVDGFNY-TGMGNSTNKKDAQT 59

Query: 214 VAAAE 218
            AA +
Sbjct: 60  NAARD 64



 Score = 41.2 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV----VE-ISGLAPAQGMDCSKRA 210
           +AK  L ++   +     EYK   + GPDH+  F       V+ +     A+    +K+ 
Sbjct: 183 NAKARLNQFFQKE-KTQGEYK-YSQVGPDHNRSFIAEMTLYVKQLGRRITAREHGSNKKL 240

Query: 211 AEQVAAAEVLKRE 223
           A Q  A  ++++ 
Sbjct: 241 AAQSCALSIVRQL 253


>gi|195577381|ref|XP_002078549.1| r2d2 [Drosophila simulans]
 gi|82469850|gb|ABB77183.1| R2D2 [Drosophila simulans]
 gi|194190558|gb|EDX04134.1| r2d2 [Drosophila simulans]
          Length = 311

 Score = 45.1 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            + A + L E+        P Y   F  G D    F   VE+  L  A G   SKR A+ 
Sbjct: 3   NKSAVSALHEFCAKTNNTPPTYN--FIKGEDGG--FVCKVELLELE-ALGNGRSKRDAKH 57

Query: 214 VAAAEVLKR 222
           +AAA ++++
Sbjct: 58  LAAANIMRK 66



 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 5/74 (6%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS- 207
           +     RD   EL+++        P  +V  +SG    P F     ++ +        S 
Sbjct: 88  EMTNLNRDMLKELRDYCVRHDMPLPRIEVVQQSGTPSAPEFVACCSVASIVR---YGKSD 144

Query: 208 -KRAAEQVAAAEVL 220
            K+ A Q AA E+L
Sbjct: 145 KKKDARQRAAIEML 158


>gi|224005857|ref|XP_002291889.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220972408|gb|EED90740.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 1310

 Score = 45.1 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 27/80 (33%), Gaps = 18/80 (22%)

Query: 159 TELQEWAHAKFGVTPEYKVTF------RSGPDHD------------PRFTVVVEISGLAP 200
           + L E         P Y +            D++              F + V ++ +  
Sbjct: 521 SALYELCSKYRWEMPRYDLIEPPSLPPSKSNDNNVGEGSNVSRHSARDFVLSVHVNEVEL 580

Query: 201 AQGMDCSKRAAEQVAAAEVL 220
            +G   +K +A+Q A+ + L
Sbjct: 581 GRGRGGTKASAKQDASRKAL 600


>gi|321454821|gb|EFX65975.1| hypothetical protein DAPPUDRAFT_263860 [Daphnia pulex]
          Length = 207

 Score = 45.1 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 10/96 (10%)

Query: 52  GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111
             +I  L+ +      + +LS+  +++   +T +++         I  S  +R     + 
Sbjct: 93  DTVILDLILDRNPELNQDQLSIFKSAITCNDTLAELVV-------ISSSEGVRALDIDY- 144

Query: 112 TSIQADVVESLIAALYLDGGIE--VAGTFVDKYWKQ 145
             I AD  E+LI AL +D   E       +      
Sbjct: 145 PKIYADSFEALIGALRIDCEREDREIRKVILNLMDD 180


>gi|224097532|ref|XP_002310975.1| predicted protein [Populus trichocarpa]
 gi|222850795|gb|EEE88342.1| predicted protein [Populus trichocarpa]
          Length = 1020

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 45/145 (31%), Gaps = 12/145 (8%)

Query: 81   AETCSQVARELD--LASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138
                ++   +L+  L   I+      K             VE L++    +G        
Sbjct: 879  DHNLAECFLKLNEELDKLIQKKLQDPKLDILKEGKYLMLAVEDLVSGDQCEGKFVFGRES 938

Query: 139  VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVVEIS 196
                      +  K   + K+ LQ          P+YK        H     F  +VE  
Sbjct: 939  RKPKVTNDNDRFTKDGANPKSLLQTLLMRAGHSPPKYKTK------HLKTNEFRALVEFK 992

Query: 197  GLAPAQGM-DCSKRAAEQVAAAEVL 220
            G+    G    +K+ AE+ AA E L
Sbjct: 993  GMQ-FVGKPKRNKQQAERDAAIEAL 1016


>gi|228470482|ref|ZP_04055355.1| ribonuclease III [Porphyromonas uenonis 60-3]
 gi|228307829|gb|EEK16773.1| ribonuclease III [Porphyromonas uenonis 60-3]
          Length = 41

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           I G    +G   SK+ A+Q AA + L+
Sbjct: 1   IDGKPVGRGAGSSKKRAQQEAARDTLE 27


>gi|255638997|gb|ACU19799.1| unknown [Glycine max]
          Length = 168

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 12/79 (15%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI------SGLAPAQGMDCSKRA 210
           A++ L E   +     P ++     GPDH  +FT  V +      + +    G   SK+ 
Sbjct: 84  ARSRLYELCASYCWKPPSFECCKAEGPDHLKQFTCKVTLEIEEAQNLILEFVGEPLSKKK 143

Query: 211 --AEQVAAAEV---LKREG 224
             AE  AA      L+ EG
Sbjct: 144 DAAE-SAAEGAFWYLQHEG 161


>gi|328785633|ref|XP_003250627.1| PREDICTED: dosage compensation regulator isoform 1 [Apis mellifera]
          Length = 1232

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQV 214
           D K+   +W   K    P++ V  ++GP H  RF   + + G      G   +K+ A+  
Sbjct: 3   DIKSFFHQWC-TKNSKEPQFDV-RQTGPKHRHRFLCELRVPGFDYVGAGNSTNKKDAQGN 60

Query: 215 AAAE 218
           AA +
Sbjct: 61  AARD 64


>gi|326679494|ref|XP_686426.4| PREDICTED: double-stranded RNA-specific editase B2 [Danio rerio]
          Length = 743

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 3/57 (5%)

Query: 169 FGVTPEYKVTFR--SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                 Y        G      F + V + G    +G   SK+ A++ AA   L+  
Sbjct: 282 LRPGLRYACLSEHAQGKRAHRSFIMAVRVDGR-IFEGSGRSKKQAKRQAAVCALQAL 337



 Score = 42.0 bits (98), Expect = 0.063,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            K  L +    +     +Y++  ++GP H P F++ VE++GL   +G   +
Sbjct: 125 PKNALVQL--NELRPGLQYRMVSQTGPVHAPLFSIAVEVNGLT-FEGTGPT 172


>gi|66510919|ref|XP_396525.2| PREDICTED: dosage compensation regulator isoform 2 [Apis mellifera]
          Length = 1239

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQV 214
           D K+   +W   K    P++ V  ++GP H  RF   + + G      G   +K+ A+  
Sbjct: 3   DIKSFFHQWC-TKNSKEPQFDV-RQTGPKHRHRFLCELRVPGFDYVGAGNSTNKKDAQGN 60

Query: 215 AAAE 218
           AA +
Sbjct: 61  AARD 64


>gi|198431249|ref|XP_002129094.1| PREDICTED: similar to Zinc finger RNA-binding protein (hZFR)
           (M-phase phosphoprotein homolog) [Ciona intestinalis]
          Length = 1143

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 3/60 (5%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG-LAPAQGMDCSKRAAEQVAA 216
           KT L  W   +    P Y V    G   +  F   + ++       G   SK+ A+  AA
Sbjct: 345 KTFLYAWMGVRHL-RPVYDVQSI-GERPEQTFRCELRVNNYKFVGVGEAESKKEAQTEAA 402


>gi|328850732|gb|EGF99893.1| hypothetical protein MELLADRAFT_112348 [Melampsora larici-populina
           98AG31]
          Length = 530

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 20/123 (16%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN-HFDSAK 67
           LE  + Y F N  LL  AL         ++ + RLE++GD +L    S ++      S +
Sbjct: 385 LENILRYTFDNIHLLRYAL-----GQFGKDEFRRLEWIGDALLADWSSLVMKKIQLKSQR 439

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           + ++      L + +T  +            V    ++   S         +E++I  +Y
Sbjct: 440 KLKVHTASTYLNANQTLWKWWVRW-------VDPTAQELPGSKK-------LEAIIGVIY 485

Query: 128 LDG 130
           +D 
Sbjct: 486 IDC 488


>gi|94734595|emb|CAK10842.1| novel protein similar to vertebrate adenosine deaminase,
           RNA-specific, B2 (ADARB2) [Danio rerio]
          Length = 715

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 3/57 (5%)

Query: 169 FGVTPEYKVTFR--SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                 Y        G      F + V + G    +G   SK+ A++ AA   L+  
Sbjct: 257 LRPGLRYACLSEHAQGKRAHRSFIMAVRVDGR-IFEGSGRSKKQAKRQAAVCALQAL 312



 Score = 42.0 bits (98), Expect = 0.066,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            K  L +    +     +Y++  ++GP H P F++ VE++GL   +G   +
Sbjct: 100 PKNALVQL--NELRPGLQYRMVSQTGPVHAPLFSIAVEVNGLT-FEGTGPT 147


>gi|46132944|ref|XP_389185.1| hypothetical protein FG09009.1 [Gibberella zeae PH-1]
          Length = 195

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 20/146 (13%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS------------------A 66
            A+TH S     +   +RL  LG   L +  +  +                         
Sbjct: 50  LAVTHKSFDQGRRGFNDRLALLGRMTLIMETTKTIVAKDPMSQPKKDKYNREPFTHPSLM 109

Query: 67  KEGELSVRFNS-LVSAETCSQVARELDLASFIRVSS-DLRKDVCSFMTSIQADVVESLIA 124
               LS +    +      S +A ++ L   +R     ++K   S +  +    + ++I 
Sbjct: 110 SVDNLSTQGAKDIAGKSNLSALAADVGLIDVVRWKPRKVQKLKQSGVDVVLNGAIMAIIG 169

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKS 150
           A+ L  G  VA   + +    +  + 
Sbjct: 170 AITLQHGGVVASQVIRERILPKLQEE 195


>gi|321449205|gb|EFX61778.1| hypothetical protein DAPPUDRAFT_271900 [Daphnia pulex]
          Length = 203

 Score = 45.1 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 45/113 (39%), Gaps = 15/113 (13%)

Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSG---KFRRD-AKTELQEWAHA 167
             + AD  E+LI AL  D   E      DK  ++  LK     KF  +     LQ     
Sbjct: 26  PKVYADAFEALIGALRRDCERE------DKVIRKSCLKPHGRLKFHNNIPVCPLQRVNQN 79

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +  + PE+K         D  F V++++  L    G   S ++AE  AA   +
Sbjct: 80  R--IKPEFK---EEKNLPDGTFHVILKVKNLQSFNGSRPSMKSAETSAAKLAI 127


>gi|315045954|ref|XP_003172352.1| hypothetical protein MGYG_04942 [Arthroderma gypseum CBS 118893]
 gi|311342738|gb|EFR01941.1| hypothetical protein MGYG_04942 [Arthroderma gypseum CBS 118893]
          Length = 156

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 52/132 (39%), Gaps = 7/132 (5%)

Query: 5   RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD 64
           R   +E  +GY F NR L   AL       +    +  L  LG   + LL+  +   ++ 
Sbjct: 16  RAKAMEDLLGYHFKNRVLALHALNLPG-RFTSIPCHTGLAQLGKAAMELLV--ITDGYYR 72

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
             ++ ++S     L+ +   + +A +  +   +       +   + +    A  +++L  
Sbjct: 73  GLEQDKISTIMTLLLDSSKLADIAAKKGVGRCMI----GNRSGDNLLPLYMARTIQALFG 128

Query: 125 ALYLDGGIEVAG 136
           A+ +D   + + 
Sbjct: 129 AILVDSNGDTSK 140


>gi|149582794|ref|XP_001521100.1| PREDICTED: hypothetical protein, partial [Ornithorhynchus anatinus]
          Length = 173

 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y++   +G  HD RF + VE+ G    +G   +
Sbjct: 13  KNPVMELNEKRRGL--KYELISETGGSHDKRFVMEVEVDGQK-FRGAGPN 59


>gi|126137704|ref|XP_001385375.1| hypothetical protein PICST_67997 [Scheffersomyces stipitis CBS
           6054]
 gi|126092653|gb|ABN67346.1| predicted protein [Scheffersomyces stipitis CBS 6054]
          Length = 362

 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 56/215 (26%), Gaps = 51/215 (23%)

Query: 46  LGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLA----------- 94
           LG  ++   ++  L   +        +   +SL+  ET  ++ +   +            
Sbjct: 104 LGKNLMSYYVAEYLLIKYPRLPMPIHNAAVDSLMGVETLHEIGKSWGIEVDQSSKLEKYL 163

Query: 95  ----SFIRVSS---------------------DLRKDVCSFMTSIQADVVES-------L 122
                F++                                   S  A   E+       +
Sbjct: 164 SQESEFLKYGKLRFVSEQRKSQVKEDGVYELSQEEIASLHRNKSFVAKETEAYASAVRSI 223

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR--DAKTELQEWAHAKFGVTP-EYKVTF 179
           +  LY   G +    F+  +   R L   +  +      EL           P E ++  
Sbjct: 224 VGGLYTHVGEDATKAFISDHILSRKLPLEQMFQFSQPTRELIRLCDKLSFTEPVEIRLIA 283

Query: 180 RSGP--DHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
            +G    H P +            +G+  S   AE
Sbjct: 284 ETGRLSAH-PIYVAGAFCGVEKLGEGIGSS--LAE 315


>gi|225456053|ref|XP_002277625.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1157

 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 10/69 (14%)

Query: 156  DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD---CSKRAAE 212
            +AK  LQ          P YK         +  F   V  +GL  A        SK+ AE
Sbjct: 1065 NAKGRLQTVLIRGGHQAPVYKTRQLK----NNMFRSTVIFNGLQFA---GQPCSSKKLAE 1117

Query: 213  QVAAAEVLK 221
            + AAA+ L+
Sbjct: 1118 KDAAAKALE 1126


>gi|297734269|emb|CBI15516.3| unnamed protein product [Vitis vinifera]
          Length = 1057

 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 10/69 (14%)

Query: 156  DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD---CSKRAAE 212
            +AK  LQ          P YK         +  F   V  +GL  A        SK+ AE
Sbjct: 965  NAKGRLQTVLIRGGHQAPVYKTRQLK----NNMFRSTVIFNGLQFA---GQPCSSKKLAE 1017

Query: 213  QVAAAEVLK 221
            + AAA+ L+
Sbjct: 1018 KDAAAKALE 1026


>gi|281345147|gb|EFB20731.1| hypothetical protein PANDA_008269 [Ailuropoda melanoleuca]
          Length = 2265

 Score = 44.7 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 19/42 (45%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
            +   + L E  + +    PE+ +   SGPDH   F   V ++
Sbjct: 2224 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVNMN 2265


>gi|225556065|gb|EEH04355.1| predicted protein [Ajellomyces capsulatus G186AR]
          Length = 141

 Score = 44.7 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 48/131 (36%), Gaps = 11/131 (8%)

Query: 8   TLEKRIGYAFANRSLLEKAL-THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
            +E   GY F N     KAL T    +   Q+S   L  +GD  L L + T+ +     A
Sbjct: 14  KIEIATGYTFTNPVFCLKALQTAGCATAGGQKS---LAQVGDAALRLALVTIGYGK--GA 68

Query: 67  KEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
             G++     +  S    +    +      +      R         + A  V++++ A+
Sbjct: 69  SRGQIDSALRTKASNSHLADQGFKRGFDGCVY-----RIGGVDVSMKMMATAVQAVLGAV 123

Query: 127 YLDGGIEVAGT 137
           +LD    +  +
Sbjct: 124 FLDCNKNIYRS 134


>gi|195166832|ref|XP_002024238.1| GL14922 [Drosophila persimilis]
 gi|198468810|ref|XP_002134128.1| GA26573 [Drosophila pseudoobscura pseudoobscura]
 gi|194107611|gb|EDW29654.1| GL14922 [Drosophila persimilis]
 gi|198146581|gb|EDY72755.1| GA26573 [Drosophila pseudoobscura pseudoobscura]
          Length = 463

 Score = 44.7 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 47/154 (30%), Gaps = 21/154 (13%)

Query: 81  AETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
            +T  Q+     L  + R      +    S    ++    ++          +E A T +
Sbjct: 306 CQTLQQICEIWHLGDYCRRKQKELRTLGNSGRAEVEPPEAQA------KRQKLEEAATAI 359

Query: 140 DKYWKQRALKSGKFRRD--------AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
              ++    +S  F R          KT L  +A       P Y+         D  F  
Sbjct: 360 TDEYEGVICRSMPFLRSTYASDNHLPKTVLYVYAGKMGKSPPAYETQQC-----DKLFRA 414

Query: 192 VVEISGLAPAQG-MDCSKRAAEQVAAAEVLKREG 224
           +        +    + +K+ AEQ AA   L   G
Sbjct: 415 ICSYDDQRYSSTFWEKNKKQAEQGAALVALLHIG 448


>gi|194895115|ref|XP_001978186.1| GG17837 [Drosophila erecta]
 gi|190649835|gb|EDV47113.1| GG17837 [Drosophila erecta]
          Length = 473

 Score = 44.7 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 6/69 (8%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVA 215
            KT+L   A       P Y+         D  F  +    G   +    + +K+ AEQ A
Sbjct: 395 PKTQLYVHAGKAGKSPPAYETQQC-----DKLFRSICTFDGQRFSSSFWEKNKKQAEQGA 449

Query: 216 AAEVLKREG 224
           A   L   G
Sbjct: 450 ALVALLHLG 458


>gi|312221739|emb|CBY01679.1| hypothetical protein [Leptosphaeria maculans]
          Length = 267

 Score = 44.7 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 50/144 (34%), Gaps = 34/144 (23%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN---------------------HF 63
            A+TH S  H  +   +RL +LG RI+ L  +  L                         
Sbjct: 117 LAVTHKSFDHGRRGFNDRLAYLGRRIVELQTAQALIKSPQETQWPRDSNDIPMPDEFGRK 176

Query: 64  DSAKE-----GELSVRFNSLV-SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQAD 117
                       L+    S+V S +  SQ+A    L           K   S M ++   
Sbjct: 177 PYLHPALNGLQGLTDEAESVVLSQKRLSQLAERYGLDK-------ADKLQDSGMEAVLIT 229

Query: 118 VVESLIAALYLDGGIEVAGTFVDK 141
            + +++ A+ L+ G +VA   V +
Sbjct: 230 SLYAIVGAIALERGGQVANKIVQE 253


>gi|290462563|gb|ADD24329.1| Double-stranded RNA-specific editase 1 [Lepeophtheirus salmonis]
          Length = 296

 Score = 44.7 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 7/77 (9%)

Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205
           + L      R     L E    + GV   Y +     P     F + V + G    +G  
Sbjct: 216 KKLPDNPTERHPVQLLNEI---QGGVN--YALVREK-PTTPVIFVMSVTVDG-VTFEGEG 268

Query: 206 CSKRAAEQVAAAEVLKR 222
            +K+ A++  A   LK+
Sbjct: 269 KNKKDAKRNCALAALKK 285


>gi|50251545|dbj|BAD28919.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|50253009|dbj|BAD29259.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|125605702|gb|EAZ44738.1| hypothetical protein OsJ_29369 [Oryza sativa Japonica Group]
          Length = 122

 Score = 44.7 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 8/68 (11%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-------DCSKRAAE 212
            L +   A     P Y      GP H   FT  V I        +       + SK+AA+
Sbjct: 46  RLHKICSATHWKEPSYDF-EEQGPSHLKLFTCKVTIHVDTFTTTIVECISEPNRSKKAAQ 104

Query: 213 QVAAAEVL 220
           + AA   L
Sbjct: 105 EHAAQGAL 112


>gi|67903614|ref|XP_682063.1| hypothetical protein AN8794.2 [Aspergillus nidulans FGSC A4]
 gi|40741397|gb|EAA60587.1| hypothetical protein AN8794.2 [Aspergillus nidulans FGSC A4]
 gi|259483000|tpe|CBF78007.1| TPA: RNase III domain protein (AFU_orthologue; AFUA_5G09670)
           [Aspergillus nidulans FGSC A4]
          Length = 246

 Score = 44.7 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 43/128 (33%), Gaps = 9/128 (7%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLI--STLLFNHFDSAKEG-----ELSV-RFN 76
            A+TH S     +   +RL FL           +   +               LS+    
Sbjct: 109 LAVTHKSFDQGRRGFNDRLAFLAQSASNSYGQPAPDRYGRKPFEHPALNGLENLSINTKR 168

Query: 77  SLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVA 135
            L      ++VAR+ DL   +R           S +  + A  + +LI AL L+ G  VA
Sbjct: 169 FLTDKSKLAEVARQYDLEKVLRWCPRKPTNLEASGVEVVLAHTLYALIGALSLEKGNLVA 228

Query: 136 GTFVDKYW 143
                +  
Sbjct: 229 NKVARERI 236


>gi|195339009|ref|XP_002036114.1| r2d2 [Drosophila sechellia]
 gi|194129994|gb|EDW52037.1| r2d2 [Drosophila sechellia]
          Length = 311

 Score = 44.7 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 5/69 (7%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            + A + L E+        P Y      G D    F   VE+  +  A G   SKR A+ 
Sbjct: 3   NKSAVSALHEFCAKTKNTPPTYNFIN--GEDGG--FVCKVELLEIE-ALGNGRSKRDAKH 57

Query: 214 VAAAEVLKR 222
           +AAA ++++
Sbjct: 58  LAAANIMRK 66



 Score = 42.8 bits (100), Expect = 0.036,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAA 217
           EL+++        P  +V  +SG    P F     ++ +        S  K+ A Q AA 
Sbjct: 99  ELRDYCVRHDMPLPCIEVVQQSGTPSAPEFVACCSVASIVR---YGKSDKKKDARQRAAI 155

Query: 218 EVL 220
           E+L
Sbjct: 156 EML 158


>gi|281206201|gb|EFA80390.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 804

 Score = 44.3 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 19/47 (40%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +++     GP H P F   + ++          SK+ AE   + + L
Sbjct: 737 KFETKHVGGPPHQPEFICDLYLNNELKETCKGSSKKDAEDKVSRQAL 783


>gi|224140399|ref|XP_002323570.1| predicted protein [Populus trichocarpa]
 gi|222868200|gb|EEF05331.1| predicted protein [Populus trichocarpa]
          Length = 563

 Score = 44.3 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 4/44 (9%)

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           V    G     R    V  +G     GM  +++ A+Q AA   L
Sbjct: 461 VLQEIG----RRCRSKVLFTGEKIGVGMGKTRKDAQQQAAENAL 500


>gi|328724252|ref|XP_003248081.1| PREDICTED: dosage compensation regulator-like [Acyrthosiphon pisum]
          Length = 190

 Score = 44.3 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQV 214
           + K  L EW  AK  + P+++   ++G   + RF   V + G      G   +K+ A+  
Sbjct: 3   NPKAFLHEWC-AKNNLEPQFE-IKQAGSKFNLRFICEVTVGGHNYVGVGNSTNKKDAQGN 60

Query: 215 AAAEVL 220
           A+ + L
Sbjct: 61  ASKDYL 66


>gi|113200881|gb|ABI32401.1| dicer [Gallus gallus]
          Length = 73

 Score = 44.3 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 7/72 (9%)

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           S    R    EL E        +P  +        +D +  V VE+ G    +G+  S R
Sbjct: 1   SANVPRSPVRELLEMEPETAKFSPAERT-------YDGKVRVTVEVVGKGKFKGVGRSYR 53

Query: 210 AAEQVAAAEVLK 221
            A+  AA   L+
Sbjct: 54  IAKSAAARRALR 65


>gi|82469800|gb|ABB77158.1| R2D2 [Drosophila biarmipes]
          Length = 302

 Score = 44.3 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAA 217
           EL+++        P  ++  + G  + P F     ++ +        S  K+ A Q AA 
Sbjct: 90  ELRDYCVRHEMPLPTIEIVQQCGTPNAPEFVACCSVASIVR---YGKSDKKKDARQRAAI 146

Query: 218 EVL 220
           E+L
Sbjct: 147 EML 149



 Score = 39.3 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 5/59 (8%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           +      + P Y      G D      V +       A G   SKR A+ +AAA +L++
Sbjct: 1   FCAKSKNIPPTYDFID--GEDGGYVCKVELM---EIEAYGNGRSKRDAKHLAAANILRK 54


>gi|242056673|ref|XP_002457482.1| hypothetical protein SORBIDRAFT_03g008040 [Sorghum bicolor]
 gi|241929457|gb|EES02602.1| hypothetical protein SORBIDRAFT_03g008040 [Sorghum bicolor]
          Length = 1390

 Score = 44.3 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 50/145 (34%), Gaps = 26/145 (17%)

Query: 96   FIRVSSDLRK--DVCSFMTSIQADVVESLIAALYLDGGIEVAG-TFVDKYWKQRALKSGK 152
            ++ + S+L            +     E L++A+ L    +     FV    + R+ K+  
Sbjct: 1213 YLSLKSELENLIHCKLQNPRMNIQTSEELLSAIRLLVTEDPCSGRFVYGRQEPRSKKAKT 1272

Query: 153  FRR-------------DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
                            +AK +LQ +        P YK            F   VE +G+ 
Sbjct: 1273 MFSPSSMSGGGGNGGDNAKNQLQTFLTRAGHSNPTYKTKQIK----SYLFRSTVEFNGMQ 1328

Query: 200  PAQGMD---CSKRAAEQVAAAEVLK 221
                +     +K+ AE+ AA+E L 
Sbjct: 1329 F---VGQPCANKKLAEKDAASEALN 1350


>gi|239611792|gb|EEQ88779.1| 60S ribosomal protein L3 [Ajellomyces dermatitidis ER-3]
          Length = 343

 Score = 44.3 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 62/210 (29%), Gaps = 57/210 (27%)

Query: 1   MSALRYSTLEKRIGYAFANRSL--LEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58
           +++ + S +  R+        L  L + L   S   + Q + + L  LG  +L    S  
Sbjct: 117 LNSAKLSAIHARLSL-PQRLPLQTLARTLVDESADPTPQFNNKSLSILGGDLLTYYTSEY 175

Query: 59  LFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLA--------------SFIRV----- 99
           L + +       L     S + A+  + + RE  L                F R+     
Sbjct: 176 LISTYPRLPVKVLWAAMYSYIGAKPLAAMTREWGLEFAAEPGPEVDPGLLQFKRLPPDTV 235

Query: 100 ------SSDLRKDVCSFMTS-----IQADVV------------------------ESLIA 124
                  + LR+D      S     I  D                           +++ 
Sbjct: 236 VETNSNGTFLRRDGGVSKRSTSARIIYGDAFGESALPYPVHHEGVTPNRACANFVRAIVG 295

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFR 154
           A+YL  G   A  F  +++  R L      
Sbjct: 296 AVYLHAGRPAAKQFYKEHFTSRHLDMASLF 325


>gi|73963942|ref|XP_868518.1| PREDICTED: similar to dicer1 isoform 2 [Canis familiaris]
          Length = 63

 Score = 44.3 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +D +  V VE+ G    +G+  S R A+  AA   L+
Sbjct: 15  YDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALR 51


>gi|302698141|ref|XP_003038749.1| hypothetical protein SCHCODRAFT_64720 [Schizophyllum commune H4-8]
 gi|300112446|gb|EFJ03847.1| hypothetical protein SCHCODRAFT_64720 [Schizophyllum commune H4-8]
          Length = 278

 Score = 44.3 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 52/139 (37%), Gaps = 12/139 (8%)

Query: 19  NRSLLEKALTHSSISH-----SYQESY---ERLEFLGDRILGLLISTLLFNHFDS--AKE 68
           +  +L    TH S+          + Y    RL  +G+R+L L ++   ++         
Sbjct: 13  DLEILMDVFTHDSLKEDDELTHMNDDYGNTARLREIGERVLDLAVTFHYYSDRQDGVLAA 72

Query: 69  GELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
            ++  R    +S +  +      +L   I+ +   R+        +  D  +  + A+Y+
Sbjct: 73  DQIVARRREALSDDRINHWMDAYELKGKIKAAPSERQA-ARSSPQV-NDFFKKYVGAIYI 130

Query: 129 DGGIEVAGTFVDKYWKQRA 147
             G+ V  T++ +     A
Sbjct: 131 RQGMGVIQTWISRLLNPDA 149



 Score = 43.9 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           + G    Y+   ++GP H P ++V   ++G     G   S++ A+++AA E  +R G
Sbjct: 218 QKGFAVNYEA-SQTGPPHAPTWSVRCLLNGTEYGTGTGTSQKKAKELAAQEAWERLG 273


>gi|332229491|ref|XP_003263921.1| PREDICTED: protein SON isoform 1 [Nomascus leucogenys]
          Length = 2426

 Score = 44.3 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 19/46 (41%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
            +   + L E  + +    PE+ +   SGPDH   F   V  +G   
Sbjct: 2370 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 2415


>gi|312375539|gb|EFR22895.1| hypothetical protein AND_14041 [Anopheles darlingi]
          Length = 512

 Score = 44.3 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 9/79 (11%)

Query: 151 GKFRRD---AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDC 206
             F +D    KT+L  +A        +Y+V  +     D  F  ++E  G   +    + 
Sbjct: 383 ANFPQDNELPKTKLFLYARRNNLELAQYEVQQK-----DKLFKGIIEFDGKRYSSTFWEK 437

Query: 207 SKRAAEQVAAAEVLKREGI 225
           SKR AEQ AA   L + G+
Sbjct: 438 SKRFAEQAAALVCLVQLGV 456


>gi|300121933|emb|CBK22507.2| unnamed protein product [Blastocystis hominis]
          Length = 103

 Score = 44.3 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 22/43 (51%)

Query: 185 HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGIWT 227
           H+ RF V  ++  +   +G   S + A   AA + L+  G+++
Sbjct: 57  HENRFHVRAKVDDVLVGEGTGSSVKIATSYAAWKGLEALGVYS 99


>gi|281332168|ref|NP_001163798.1| SON DNA-binding protein isoform 1 [Rattus norvegicus]
          Length = 2446

 Score = 44.3 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 19/46 (41%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
            +   + L E  + +    PE+ +   SGPDH   F   V  +G   
Sbjct: 2390 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 2435


>gi|229220869|gb|ACQ45368.1| SON DNA-binding protein isoform F (predicted), 3 prime [Dasypus
            novemcinctus]
          Length = 2012

 Score = 44.3 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 19/46 (41%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
            +   + L E  + +    PE+ +   SGPDH   F   V  +G   
Sbjct: 1956 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 2001


>gi|224125268|ref|XP_002329763.1| predicted protein [Populus trichocarpa]
 gi|222870825|gb|EEF07956.1| predicted protein [Populus trichocarpa]
          Length = 224

 Score = 44.3 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 19/36 (52%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +F++    +G    +G   ++R A++ AA   +K+ 
Sbjct: 20  QFSIEAWFAGEKVGEGTGKTRREAQRQAAEGSIKKL 55



 Score = 38.5 bits (89), Expect = 0.62,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 14/33 (42%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
                VEI G    +G+  +   A+  AA + L
Sbjct: 138 EVHAQVEIDGQVLGKGIGSTWDEAKMQAAEKAL 170


>gi|218456207|gb|ACK77499.1| SON DNA-binding protein isoform F (predicted) [Oryctolagus cuniculus]
          Length = 2402

 Score = 44.3 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 19/46 (41%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
            +   + L E  + +    PE+ +   SGPDH   F   V  +G   
Sbjct: 2346 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 2391


>gi|218202148|gb|EEC84575.1| hypothetical protein OsI_31370 [Oryza sativa Indica Group]
          Length = 180

 Score = 44.3 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 23/68 (33%), Gaps = 8/68 (11%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-------DCSKRAAE 212
            L +   A     P Y      GP H   FT  V I        +         SK+AA+
Sbjct: 104 RLHKICSATHWKEPSYDF-EEQGPSHLKLFTCKVTIHVDTFTTTIVECISEPKRSKKAAQ 162

Query: 213 QVAAAEVL 220
           + AA   L
Sbjct: 163 EHAAQGAL 170


>gi|204305650|gb|ACG63674.2| SON DNA-binding protein isoform F (predicted) [Otolemur garnettii]
          Length = 2411

 Score = 44.3 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 19/46 (41%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
            +   + L E  + +    PE+ +   SGPDH   F   V  +G   
Sbjct: 2355 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 2400


>gi|194226216|ref|XP_001915595.1| PREDICTED: similar to SON DNA binding protein, isoform f (predicted)
            [Equus caballus]
          Length = 2426

 Score = 44.3 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 19/46 (41%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
            +   + L E  + +    PE+ +   SGPDH   F   V  +G   
Sbjct: 2370 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 2415


>gi|195034168|ref|XP_001988838.1| GH10357 [Drosophila grimshawi]
 gi|193904838|gb|EDW03705.1| GH10357 [Drosophila grimshawi]
          Length = 317

 Score = 44.3 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM 204
           ++A +     RD   EL+++   +    P  ++  +SG    P F     ++ +      
Sbjct: 91  KKAEELTNMNRDMLKELRDYCVRQDMPLPTIEIVQQSGTPSAPEFVACCSVASIKR---Y 147

Query: 205 DCS--KRAAEQVAAAEVL 220
             S  K+ A Q AA E+L
Sbjct: 148 GKSDKKKDARQRAAIEML 165



 Score = 41.6 bits (97), Expect = 0.084,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 7/66 (10%)

Query: 159 TELQEWAHAKFGVTPEYK-VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           + LQE+        P Y  +    G      +   V +  +  A G   SKR A+ +AA 
Sbjct: 8   SALQEFCSQAKTGNPFYDYIDGEEGG-----YICKVVLMDVE-AYGNGRSKRDAKHLAAT 61

Query: 218 EVLKRE 223
            ++++ 
Sbjct: 62  NIMRKL 67


>gi|189908181|gb|ACE60213.1| SON protein (predicted) [Sorex araneus]
          Length = 1825

 Score = 44.3 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 19/46 (41%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
            +   + L E  + +    PE+ +   SGPDH   F   V  +G   
Sbjct: 1769 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 1814


>gi|177773079|gb|ACB73274.1| SON DNA-binding protein isoform F (predicted) [Rhinolophus
            ferrumequinum]
          Length = 2432

 Score = 44.3 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 19/46 (41%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
            +   + L E  + +    PE+ +   SGPDH   F   V  +G   
Sbjct: 2376 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 2421


>gi|169246083|gb|ACA51060.1| SON DNA-binding protein isoform F (predicted) [Callicebus moloch]
          Length = 2422

 Score = 44.3 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 19/46 (41%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
            +   + L E  + +    PE+ +   SGPDH   F   V  +G   
Sbjct: 2366 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 2411


>gi|281183286|ref|NP_001162514.1| protein SON [Papio anubis]
 gi|159487307|gb|ABW97197.1| SON DNA binding protein, isoform f (predicted) [Papio anubis]
          Length = 2426

 Score = 44.3 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 19/46 (41%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
            +   + L E  + +    PE+ +   SGPDH   F   V  +G   
Sbjct: 2370 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 2415


>gi|149637430|ref|XP_001513874.1| PREDICTED: similar to NREBP [Ornithorhynchus anatinus]
          Length = 2213

 Score = 44.3 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 19/46 (41%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
            +   + L E  + +    PE+ +   SGPDH   F   V  +G   
Sbjct: 2157 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 2202


>gi|148671870|gb|EDL03817.1| Son cell proliferation protein, isoform CRA_a [Mus musculus]
          Length = 2451

 Score = 44.3 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 19/46 (41%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
            +   + L E  + +    PE+ +   SGPDH   F   V  +G   
Sbjct: 2395 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 2440


>gi|126325255|ref|XP_001365912.1| PREDICTED: similar to interleukin-16 isoform 1 [Monodelphis
            domestica]
          Length = 2421

 Score = 44.3 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 19/46 (41%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
            +   + L E  + +    PE+ +   SGPDH   F   V  +G   
Sbjct: 2365 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 2410


>gi|124358955|ref|NP_849211.3| protein SON [Mus musculus]
          Length = 2444

 Score = 44.3 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 19/46 (41%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
            +   + L E  + +    PE+ +   SGPDH   F   V  +G   
Sbjct: 2388 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 2433


>gi|114683934|ref|XP_001165903.1| PREDICTED: similar to NREBP isoform 8 [Pan troglodytes]
          Length = 2388

 Score = 44.3 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 19/46 (41%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
            +   + L E  + +    PE+ +   SGPDH   F   V  +G   
Sbjct: 2332 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 2377


>gi|114683948|ref|XP_001165838.1| PREDICTED: SON DNA-binding protein isoform 6 [Pan troglodytes]
          Length = 2233

 Score = 44.3 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 19/46 (41%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
            +   + L E  + +    PE+ +   SGPDH   F   V  +G   
Sbjct: 2177 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 2222


>gi|114683932|ref|XP_001165975.1| PREDICTED: protein SON isoform 9 [Pan troglodytes]
          Length = 2426

 Score = 44.3 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 19/46 (41%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
            +   + L E  + +    PE+ +   SGPDH   F   V  +G   
Sbjct: 2370 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 2415


>gi|74001163|ref|XP_857478.1| PREDICTED: similar to SON protein (SON3) (Negative regulatory
            element-binding protein) (NRE-binding protein) (DBP-5)
            (Bax antagonist selected in saccharomyces 1) (BASS1)
            isoform 21 [Canis familiaris]
          Length = 2415

 Score = 44.3 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 19/46 (41%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
            +   + L E  + +    PE+ +   SGPDH   F   V  +G   
Sbjct: 2359 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 2404


>gi|74001129|ref|XP_856774.1| PREDICTED: similar to SON protein (SON3) (Negative regulatory
            element-binding protein) (NRE-binding protein) (DBP-5)
            (Bax antagonist selected in saccharomyces 1) (BASS1)
            isoform 5 [Canis familiaris]
          Length = 2431

 Score = 44.3 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 19/46 (41%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
            +   + L E  + +    PE+ +   SGPDH   F   V  +G   
Sbjct: 2375 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 2420


>gi|74001161|ref|XP_857437.1| PREDICTED: similar to SON DNA-binding protein isoform G isoform 20
            [Canis familiaris]
          Length = 2393

 Score = 44.3 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 19/46 (41%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
            +   + L E  + +    PE+ +   SGPDH   F   V  +G   
Sbjct: 2337 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 2382


>gi|74001149|ref|XP_857186.1| PREDICTED: similar to SON DNA-binding protein isoform G isoform 14
            [Canis familiaris]
          Length = 1320

 Score = 44.3 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 19/46 (41%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
            +   + L E  + +    PE+ +   SGPDH   F   V  +G   
Sbjct: 1264 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 1309


>gi|74001151|ref|XP_857233.1| PREDICTED: similar to SON DNA-binding protein isoform G isoform 15
            [Canis familiaris]
          Length = 1425

 Score = 44.3 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 19/46 (41%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
            +   + L E  + +    PE+ +   SGPDH   F   V  +G   
Sbjct: 1369 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 1414


>gi|14571500|gb|AAK07692.1| NREBP [Homo sapiens]
          Length = 2386

 Score = 44.3 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 19/46 (41%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
            +   + L E  + +    PE+ +   SGPDH   F   V  +G   
Sbjct: 2330 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 2375


>gi|20139953|sp|Q9QX47|SON_MOUSE RecName: Full=Protein SON
 gi|6671176|gb|AAF23120.1| SON protein [Mus musculus]
          Length = 2404

 Score = 44.3 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 19/46 (41%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
            +   + L E  + +    PE+ +   SGPDH   F   V  +G   
Sbjct: 2348 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 2393


>gi|41058336|gb|AAR99160.1| dsRNA-binding protein [Solanum lycopersicum]
          Length = 318

 Score = 44.3 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 19/49 (38%)

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            P+Y+            FT  V++ G+        +K+ AE  AA   L
Sbjct: 1   IPQYECERYDSESKIISFTCTVDVGGMKYIGAAARTKKEAEIKAARTAL 49


>gi|289616346|emb|CBI56873.1| unnamed protein product [Sordaria macrospora]
          Length = 365

 Score = 44.3 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 54/146 (36%), Gaps = 26/146 (17%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLIST---------------LLFNHFDSAKEG 69
            A+TH S  +  +    RL FLG +I+ L  +                     ++ A   
Sbjct: 221 LAVTHKSFDYGRRGYNTRLAFLGRQIIALETTRSILTSPVLNEPAADKYGRQPYNHAALA 280

Query: 70  ELSVRFNS----LVSAETCSQVARELDLASFI----RVSSDLRKDVCSFMTSIQADVVES 121
            +    ++    ++     +++  +L L + +    R+  DL       +  +    + +
Sbjct: 281 NIDKLIHTQPIDIMDKTKIARMGIDLGLLTVLRWKPRMPEDLESSG---VVVVLNSTLFA 337

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA 147
           +I A+ L+ G  VA   V +   ++ 
Sbjct: 338 IIGAISLEKGAAVAQRIVREKILKKL 363


>gi|255722579|ref|XP_002546224.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240136713|gb|EER36266.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 561

 Score = 44.3 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 27/65 (41%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQV 87
           T  S + S     E L+FLG   +   I  +    F    +  L+   N L S  + ++ 
Sbjct: 194 TSKSCNESVSSKSENLQFLGKSFMATCIGFVFEKSFIHVNQQSLTYLRNKLTSESSLAKF 253

Query: 88  ARELD 92
            R+LD
Sbjct: 254 FRDLD 258


>gi|256092860|ref|XP_002582095.1| ATP-dependent RNA Helicase [Schistosoma mansoni]
 gi|238804738|emb|CAZ39195.1| ATP-dependent RNA Helicase, putative [Schistosoma mansoni]
          Length = 1289

 Score = 44.3 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 4/71 (5%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAA 216
           K+ L  +   K  + PEY    +    +  RF       G      G   +K+ A+  AA
Sbjct: 8   KSFLYTFLQTKKRIAPEYTFIEKPVGRNKVRFLCEARADGFNYVGIGNSTTKKEAQTNAA 67

Query: 217 AEV---LKREG 224
            +    L REG
Sbjct: 68  RDFVNYLVREG 78


>gi|198427128|ref|XP_002120497.1| PREDICTED: similar to tRNA-dihydrouridine synthase 2-like (hDUS2)
           (Up-regulated in lung cancer) (URLC8) [Ciona
           intestinalis]
          Length = 482

 Score = 44.3 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAE 212
            K+ L EWA +K    P Y  + R     D RF  +V++ G        + +KR AE
Sbjct: 415 PKSILLEWARSKGIKEPVYTTSCRE---SDRRFCSIVKVDGRKYTNTFWERNKRLAE 468


>gi|293334643|ref|NP_001168634.1| hypothetical protein LOC100382420 [Zea mays]
 gi|223949721|gb|ACN28944.1| unknown [Zea mays]
          Length = 623

 Score = 44.3 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 16/35 (45%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F+V V  +      G+  ++  A+  AA + L+  
Sbjct: 566 FSVEVLFNNEKIGIGVGKTRDEAQVQAAEKALQNL 600


>gi|320583778|gb|EFW97991.1| Mitochondrial ribosomal protein of the large subunit [Pichia
           angusta DL-1]
          Length = 237

 Score = 44.3 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 59/156 (37%), Gaps = 22/156 (14%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLIS---- 56
           +     S L+ +  Y   ++ LL + +TH S +H  Q    RL + G  ++ L  +    
Sbjct: 68  LKTFLQSKLQGK--YELPDK-LLLQIITHKSFAHGTQPYNARLSYFGRELIQLSAAKYAI 124

Query: 57  ------TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLA----SFIRVSSDLRKD 106
                     N+ +    G  +   + + +     + A   +L       + + S    D
Sbjct: 125 TRSTNNEYAINNLNFDSLGSYTQ--SLMKTDRLLKEYAVVNNLDAVFFRRLALPSGKEDD 182

Query: 107 VCSFMTS-IQADVVESLIAALYLDGGIEVAGTFVDK 141
             ++    I + +  SL+ A+    G + A  F++K
Sbjct: 183 --NYKPKAIWSTLTASLVGAIASQHGKKAAEEFIEK 216


>gi|208690881|gb|ACI31216.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Gorilla
           gorilla]
          Length = 551

 Score = 44.3 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 161 LQEWAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           L      K  +T  Y+   +   GP+    F    ++     + G   +K+ A+Q+AA  
Sbjct: 104 LINRIAQKKRLTVNYEQCASGVHGPEG---FHYKCKMGQKEYSIGTGSTKQEAKQLAAKL 160

Query: 219 V 219
            
Sbjct: 161 A 161



 Score = 43.1 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 19/41 (46%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            K GV  +Y+    SGP HD RFT  V I      +G   S
Sbjct: 19  QKQGVVLKYQELPNSGPPHDRRFTFRVIIDEREFPEGEGRS 59


>gi|108711083|gb|ABF98878.1| Helicase associated domain family protein, expressed [Oryza sativa
            Japonica Group]
          Length = 1138

 Score = 44.3 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 10/72 (13%)

Query: 152  KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVVEISGLAPAQGM-DCSK 208
            K   + K+ LQ          P+YK        H     F  +VE  G+  A G    +K
Sbjct: 1031 KDGMNPKSLLQTLLMRAGHTPPKYKTK------HLKTNEFRAIVEFKGMQFA-GKPKRNK 1083

Query: 209  RAAEQVAAAEVL 220
            + AE+ AA E L
Sbjct: 1084 QLAERDAAIEAL 1095


>gi|218187401|gb|EEC69828.1| hypothetical protein OsI_00149 [Oryza sativa Indica Group]
          Length = 1680

 Score = 44.3 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 10/69 (14%)

Query: 156  DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD---CSKRAAE 212
            +AK +LQ          P YK         +  F   VE +G+     +     +K+ AE
Sbjct: 1583 NAKNQLQTLLTRAGHDNPSYKTKQIK----NSLFRSTVEFNGMQF---VGQPCANKKLAE 1635

Query: 213  QVAAAEVLK 221
            + AA E L 
Sbjct: 1636 KDAAGEALN 1644


>gi|158340517|ref|YP_001521511.1| hypothetical protein AM1_C0062 [Acaryochloris marina MBIC11017]
 gi|158310758|gb|ABW32372.1| hypothetical protein AM1_C0062 [Acaryochloris marina MBIC11017]
          Length = 144

 Score = 44.3 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 6/66 (9%)

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           S     +    LQE    +    P Y+  F   P+    F  +V   GL    G   SK+
Sbjct: 78  SADVVENPIGALQELCQRQQISMPRYE--FEVIPEG---FRCLVLAMGLR-GVGEGRSKK 131

Query: 210 AAEQVA 215
            A+ +A
Sbjct: 132 QAKVMA 137


>gi|218193752|gb|EEC76179.1| hypothetical protein OsI_13511 [Oryza sativa Indica Group]
          Length = 1150

 Score = 44.3 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 10/72 (13%)

Query: 152  KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVVEISGLAPAQGM-DCSK 208
            K   + K+ LQ          P+YK        H     F  +VE  G+  A G    +K
Sbjct: 1043 KDGMNPKSLLQTLLMRAGHTPPKYKTK------HLKTNEFRAIVEFKGMQFA-GKPKRNK 1095

Query: 209  RAAEQVAAAEVL 220
            + AE+ AA E L
Sbjct: 1096 QLAERDAAIEAL 1107


>gi|240256018|ref|NP_193824.4| double-stranded RNA binding [Arabidopsis thaliana]
 gi|332658976|gb|AEE84376.1| double-stranded RNA-binding domain (DsRBD)-containing protein
           [Arabidopsis thaliana]
          Length = 743

 Score = 44.3 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E    KFGV   Y++       +D  +   +++   +    +   K+ +EQ AA   L++
Sbjct: 13  EMILQKFGVKAIYRIEEVHVSSNDCLYRCHLQLPEFSVVSNVFKRKKDSEQSAAELALEK 72

Query: 223 EGI 225
            GI
Sbjct: 73  LGI 75


>gi|222625798|gb|EEE59930.1| hypothetical protein OsJ_12573 [Oryza sativa Japonica Group]
          Length = 966

 Score = 44.3 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 10/72 (13%)

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVVEISGLAPAQGM-DCSK 208
           K   + K+ LQ          P+YK        H     F  +VE  G+  A G    +K
Sbjct: 859 KDGMNPKSLLQTLLMRAGHTPPKYKTK------HLKTNEFRAIVEFKGMQFA-GKPKRNK 911

Query: 209 RAAEQVAAAEVL 220
           + AE+ AA E L
Sbjct: 912 QLAERDAAIEAL 923


>gi|167756029|ref|ZP_02428156.1| hypothetical protein CLORAM_01549 [Clostridium ramosum DSM 1402]
 gi|237734014|ref|ZP_04564495.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|167704021|gb|EDS18600.1| hypothetical protein CLORAM_01549 [Clostridium ramosum DSM 1402]
 gi|229382840|gb|EEO32931.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 125

 Score = 44.3 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 39/108 (36%), Gaps = 8/108 (7%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI----- 97
           L +LGD I  +L+   L       K  +L       VSA + +    ++    F      
Sbjct: 11  LAYLGDSIFEVLVRDYLVKESGFVKPNDLQREAVKYVSASSHAAFMHDMLDEEFFSADEV 70

Query: 98  ---RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
              +   + +      +  + +   E++I  LYL+   +      ++Y
Sbjct: 71  GTYKRGRNTKGSKNESLDHMHSTGFEAVIGTLYLEENFDRIKVIFERY 118


>gi|297799968|ref|XP_002867868.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297313704|gb|EFH44127.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 854

 Score = 43.9 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 28/63 (44%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E  H KFG    Y++       ++  +   +++   +    +   K+ +EQ AA   L++
Sbjct: 13  EIIHQKFGDKAIYRIEEVHVSSNECLYRCHLQLPEFSVVSNVFKRKKDSEQSAAELALEK 72

Query: 223 EGI 225
            GI
Sbjct: 73  LGI 75


>gi|222617638|gb|EEE53770.1| hypothetical protein OsJ_00159 [Oryza sativa Japonica Group]
          Length = 1700

 Score = 43.9 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 10/69 (14%)

Query: 156  DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD---CSKRAAE 212
            +AK +LQ          P YK         +  F   VE +G+     +     +K+ AE
Sbjct: 1603 NAKNQLQTLLTRAGHDNPSYKTKQIK----NSLFRSTVEFNGMQF---VGQPCANKKLAE 1655

Query: 213  QVAAAEVLK 221
            + AA E L 
Sbjct: 1656 KDAAGEALN 1664


>gi|146260811|gb|ABQ14708.1| adenosine deaminase [Bombyx mori]
          Length = 570

 Score = 43.9 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            H  RF VV +I      +G   SK+ A+  AA   L
Sbjct: 162 AHSMRFKVVCQIKEQK-FEGYGSSKKLAKLAAARSAL 197



 Score = 43.5 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 184 DHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            H P FTV V ++     +G   SKR A   AA   L
Sbjct: 13  AHCPSFTVAVNVAD-MTFEGWGHSKREARASAARVCL 48


>gi|119630221|gb|EAX09816.1| SON DNA binding protein, isoform CRA_c [Homo sapiens]
          Length = 2426

 Score = 43.9 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 19/43 (44%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197
            +   + L E  + +    PE+ +   SGPDH   F   V  +G
Sbjct: 2370 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNG 2412


>gi|21040326|ref|NP_620305.1| protein SON isoform F [Homo sapiens]
 gi|296453022|sp|P18583|SON_HUMAN RecName: Full=Protein SON; AltName: Full=Bax antagonist selected in
            saccharomyces 1; Short=BASS1; AltName: Full=Negative
            regulatory element-binding protein; Short=NRE-binding
            protein; AltName: Full=Protein DBP-5; AltName: Full=SON3
          Length = 2426

 Score = 43.9 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 19/43 (44%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197
            +   + L E  + +    PE+ +   SGPDH   F   V  +G
Sbjct: 2370 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNG 2412


>gi|17046383|gb|AAL34502.1|AF380184_1 SON DNA binding protein isoform F [Homo sapiens]
          Length = 2426

 Score = 43.9 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 19/43 (44%)

Query: 155  RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197
            +   + L E  + +    PE+ +   SGPDH   F   V  +G
Sbjct: 2370 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNG 2412


>gi|47225151|emb|CAF98778.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 812

 Score = 43.9 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F + V + G    +G   SK+ A+  AA   L+  
Sbjct: 287 RSFVMAVRVDGR-IFEGCGRSKKLAKNQAAQCALRAL 322



 Score = 41.6 bits (97), Expect = 0.074,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            K  L +    +     +Y +  ++GP H P F++ VE++GL   +G   +
Sbjct: 101 PKNALVQL--NELRPGLQYHMVSQTGPVHAPVFSIAVEVNGLT-FEGTGPT 148


>gi|18087663|gb|AAL58955.1|AC091811_4 putative helicase [Oryza sativa Japonica Group]
          Length = 1121

 Score = 43.9 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 10/72 (13%)

Query: 152  KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVVEISGLAPAQGM-DCSK 208
            K   + K+ LQ          P+YK        H     F  +VE  G+  A G    +K
Sbjct: 1014 KDGMNPKSLLQTLLMRAGHTPPKYKTK------HLKTNEFRAIVEFKGMQFA-GKPKRNK 1066

Query: 209  RAAEQVAAAEVL 220
            + AE+ AA E L
Sbjct: 1067 QLAERDAAIEAL 1078


>gi|111025395|ref|YP_707815.1| exoribonuclease II [Rhodococcus jostii RHA1]
 gi|110824374|gb|ABG99657.1| probable exoribonuclease II [Rhodococcus jostii RHA1]
          Length = 615

 Score = 43.9 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 164 WAHAKFGVTPEYKVTFR-SGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           W  A     P  ++     GP H P F     +  +        SK+ AEQ AA
Sbjct: 422 WLQAH-PDLPRPEIDGDNRGPSHTPVFAARFRVGQVCGPWATAGSKKRAEQDAA 474



 Score = 38.5 bits (89), Expect = 0.80,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
               +P++ V    G  H P FT  V       A G   +K  A   AAA++
Sbjct: 551 HGHPSPQW-VVRMEGAAHAPVFTCDVRYLDHT-ATGSGTTKNLARTAAAADL 600


>gi|5262782|emb|CAB45887.1| putative protein [Arabidopsis thaliana]
 gi|7268889|emb|CAB79092.1| putative protein [Arabidopsis thaliana]
          Length = 870

 Score = 43.9 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           E    KFGV   Y++       +D  +   +++   +    +   K+ +EQ AA   L++
Sbjct: 13  EMILQKFGVKAIYRIEEVHVSSNDCLYRCHLQLPEFSVVSNVFKRKKDSEQSAAELALEK 72

Query: 223 EGI 225
            GI
Sbjct: 73  LGI 75


>gi|74001147|ref|XP_857143.1| PREDICTED: similar to SON protein isoform 13 [Canis familiaris]
          Length = 358

 Score = 43.9 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 19/46 (41%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
           +   + L E  + +    PE+ +   SGPDH   F   V  +G   
Sbjct: 302 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 347


>gi|116200546|ref|XP_001226085.1| hypothetical protein CHGG_10818 [Chaetomium globosum CBS 148.51]
 gi|88175532|gb|EAQ83000.1| hypothetical protein CHGG_10818 [Chaetomium globosum CBS 148.51]
          Length = 402

 Score = 43.9 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 47/130 (36%), Gaps = 9/130 (6%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF------NSL 78
            A+TH S     +    RL +  +       +   F           +V          +
Sbjct: 273 LAITHKSFDQGRRGFNTRLAYFANA--RDPPTQDSFGREPFQDPALANVDKLNVKQPMDV 330

Query: 79  VSAETCSQVARELDLASFIRVSSDL-RKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137
           VS +  +++A ++ L    R    +      S +T++    + ++I A+ L  G EVA  
Sbjct: 331 VSKDKLAKLAIDVGLPEVTRWKPRMPEHLEGSGLTAVLNTSLFAIIGAISLQHGAEVAQQ 390

Query: 138 FVDKYWKQRA 147
            V +   +R 
Sbjct: 391 VVREKILRRL 400


>gi|297852484|ref|XP_002894123.1| helicase domain-containing protein [Arabidopsis lyrata subsp. lyrata]
 gi|297339965|gb|EFH70382.1| helicase domain-containing protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1197

 Score = 43.9 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 10/66 (15%)

Query: 158  KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC---SKRAAEQV 214
            K +LQ         +P YK         + +F  +V  +GL     M     SK+ AE+ 
Sbjct: 1102 KNQLQTLLARAGHGSPVYKTRQLK----NNQFRAMVTFNGLDF---MGKPCGSKKNAEKD 1154

Query: 215  AAAEVL 220
            AA E L
Sbjct: 1155 AAHEAL 1160


>gi|74001139|ref|XP_856976.1| PREDICTED: similar to SON protein isoform 10 [Canis familiaris]
 gi|74001143|ref|XP_857061.1| PREDICTED: similar to SON protein isoform 11 [Canis familiaris]
 gi|26330460|dbj|BAC28960.1| unnamed protein product [Mus musculus]
          Length = 119

 Score = 43.9 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 19/46 (41%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
           +   + L E  + +    PE+ +   SGPDH   F   V  +G   
Sbjct: 63  KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 108


>gi|224576553|gb|ACN56950.1| At1g01040-like protein [Capsella rubella]
 gi|224576555|gb|ACN56951.1| At1g01040-like protein [Capsella rubella]
 gi|224576557|gb|ACN56952.1| At1g01040-like protein [Capsella rubella]
 gi|224576559|gb|ACN56953.1| At1g01040-like protein [Capsella rubella]
 gi|224576561|gb|ACN56954.1| At1g01040-like protein [Capsella rubella]
 gi|224576563|gb|ACN56955.1| At1g01040-like protein [Capsella rubella]
 gi|224576565|gb|ACN56956.1| At1g01040-like protein [Capsella rubella]
 gi|224576567|gb|ACN56957.1| At1g01040-like protein [Capsella rubella]
 gi|224576569|gb|ACN56958.1| At1g01040-like protein [Capsella rubella]
 gi|224576571|gb|ACN56959.1| At1g01040-like protein [Capsella rubella]
 gi|224576573|gb|ACN56960.1| At1g01040-like protein [Capsella rubella]
 gi|224576575|gb|ACN56961.1| At1g01040-like protein [Capsella rubella]
 gi|224576577|gb|ACN56962.1| At1g01040-like protein [Capsella rubella]
 gi|224576583|gb|ACN56965.1| At1g01040-like protein [Capsella grandiflora]
 gi|224576585|gb|ACN56966.1| At1g01040-like protein [Capsella grandiflora]
 gi|224576587|gb|ACN56967.1| At1g01040-like protein [Capsella grandiflora]
 gi|224576593|gb|ACN56970.1| At1g01040-like protein [Capsella grandiflora]
 gi|224576595|gb|ACN56971.1| At1g01040-like protein [Capsella grandiflora]
 gi|224576597|gb|ACN56972.1| At1g01040-like protein [Capsella grandiflora]
 gi|224576599|gb|ACN56973.1| At1g01040-like protein [Capsella grandiflora]
 gi|224576603|gb|ACN56975.1| At1g01040-like protein [Capsella grandiflora]
 gi|224576605|gb|ACN56976.1| At1g01040-like protein [Capsella grandiflora]
          Length = 180

 Score = 43.9 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 46/142 (32%), Gaps = 52/142 (36%)

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-------------- 98
            ++S  LF  +    EG+L+     +VS     Q A    L S+I+              
Sbjct: 1   WVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQADRFAPSRWSAPGV 60

Query: 99  --------------------VSS--------DLRKDV------CSFM---TSIQADVVES 121
                               +S            +D        S+    +   ADVVE+
Sbjct: 61  PPVFDEDTKESSFFDEEQKPLSKENSDVFEDGEMEDGELEGDLSSYRVLSSKTLADVVEA 120

Query: 122 LIAALYLDGGIEVAGTFVDKYW 143
           LI   Y++GG ++A   +  + 
Sbjct: 121 LIGVYYVEGG-KIAANHLMTWI 141


>gi|297667845|ref|XP_002812174.1| PREDICTED: interferon-induced, double-stranded RNA-activated
           protein kinase [Pongo abelii]
          Length = 510

 Score = 43.9 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 18/41 (43%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            K GV   Y+    SGP HD RFT  V I G    +    S
Sbjct: 19  QKQGVVLRYQELPNSGPPHDRRFTFRVIIDGREFPEAEGRS 59



 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 7/31 (22%), Positives = 14/31 (45%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           F    ++     + G   +K+ A+Q+AA   
Sbjct: 131 FHYKCKMGQKEYSIGTGSTKQEAKQLAAKFA 161


>gi|195147974|ref|XP_002014949.1| GL19450 [Drosophila persimilis]
 gi|194106902|gb|EDW28945.1| GL19450 [Drosophila persimilis]
          Length = 398

 Score = 43.9 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 11/74 (14%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            ++  + L E+       TP+Y+    +    +  F+  VE+  +    G   SK++A  
Sbjct: 3   DQNFVSYLVEFCVKLKLNTPKYRFVTEA----NREFSCNVELQDIQ-GYGRARSKQSAAH 57

Query: 214 VAAAEVLKREGIWT 227
           VAA        +WT
Sbjct: 58  VAARN------VWT 65


>gi|224576609|gb|ACN56978.1| At1g01040-like protein [Capsella grandiflora]
          Length = 180

 Score = 43.9 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 46/142 (32%), Gaps = 52/142 (36%)

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-------------- 98
            ++S  LF  +    EG+L+     +VS     Q A    L S+I+              
Sbjct: 1   WVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQADRFAPSRWSAPGV 60

Query: 99  --------------------VSS--------DLRKDV------CSFM---TSIQADVVES 121
                               +S            +D        S+    +   ADVVE+
Sbjct: 61  PPVFDEDTKESSFFDEEQKPLSKEXSDVFEDGEMEDGELEGDLSSYRVLSSKTLADVVEA 120

Query: 122 LIAALYLDGGIEVAGTFVDKYW 143
           LI   Y++GG ++A   +  + 
Sbjct: 121 LIGVYYVEGG-KIAANHLMTWI 141


>gi|53791439|dbj|BAD52491.1| putative DEAD/H box polypeptide 36 protein [Oryza sativa Japonica
            Group]
          Length = 1063

 Score = 43.9 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 10/69 (14%)

Query: 156  DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD---CSKRAAE 212
            +AK +LQ          P YK         +  F   VE +G+     +     +K+ AE
Sbjct: 966  NAKNQLQTLLTRAGHDNPSYKTKQIK----NSLFRSTVEFNGMQF---VGQPCANKKLAE 1018

Query: 213  QVAAAEVLK 221
            + AA E L 
Sbjct: 1019 KDAAGEALN 1027


>gi|208690883|gb|ACI31217.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Pongo
           pygmaeus pygmaeus]
          Length = 551

 Score = 43.9 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 18/41 (43%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            K GV   Y+    SGP HD RFT  V I G    +    S
Sbjct: 19  QKQGVVLRYQELPNSGPPHDRRFTFRVIIDGREFPEAEGRS 59



 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 7/31 (22%), Positives = 14/31 (45%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           F    ++     + G   +K+ A+Q+AA   
Sbjct: 131 FHYKCKMGQKEYSIGTGSTKQEAKQLAAKFA 161


>gi|55730356|emb|CAH91900.1| hypothetical protein [Pongo abelii]
          Length = 512

 Score = 43.9 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 18/41 (43%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            K GV   Y+    SGP HD RFT  V I G    +    S
Sbjct: 19  QKQGVVLRYQELPNSGPPHDRRFTFRVIIDGREFPEAEGRS 59



 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 7/31 (22%), Positives = 14/31 (45%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           F    ++     + G   +K+ A+Q+AA   
Sbjct: 131 FHYKCKMGQKEYSIGTGSTKQEAKQLAAKFA 161


>gi|170055796|ref|XP_001863741.1| ATP-dependent RNA helicase [Culex quinquefasciatus]
 gi|167875616|gb|EDS38999.1| ATP-dependent RNA helicase [Culex quinquefasciatus]
          Length = 378

 Score = 43.9 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 179 FRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218
             SGP +  RF   V +  +A    G   +K+ AE+ AA +
Sbjct: 201 STSGPKNRQRFLCEVRVPNVAYVGAGNSTNKKDAERNAARD 241


>gi|224576591|gb|ACN56969.1| At1g01040-like protein [Capsella grandiflora]
 gi|224576601|gb|ACN56974.1| At1g01040-like protein [Capsella grandiflora]
          Length = 180

 Score = 43.9 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 46/142 (32%), Gaps = 52/142 (36%)

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-------------- 98
            ++S  LF  +    EG+L+     +VS     Q A    L S+I+              
Sbjct: 1   WVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQADRFAPSRWSAPGV 60

Query: 99  --------------------VSS--------DLRKDV------CSFM---TSIQADVVES 121
                               +S            +D        S+    +   ADVVE+
Sbjct: 61  PPVFDEDTKESSFFBEEQKPLSKENSDVFEDGEMEDGELEGDLSSYRVLSSKTLADVVEA 120

Query: 122 LIAALYLDGGIEVAGTFVDKYW 143
           LI   Y++GG ++A   +  + 
Sbjct: 121 LIGVYYVEGG-KIAANHLMTWI 141


>gi|71754729|ref|XP_828279.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|70833665|gb|EAN79167.1| hypothetical protein, conserved [Trypanosoma brucei]
 gi|261334101|emb|CBH17095.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 222

 Score = 43.9 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 61/166 (36%), Gaps = 27/166 (16%)

Query: 7   STLEKRIGYAFANRS-----LLEKALTHSSISHSYQESYERLEF--LGDRILGLLISTLL 59
           + L +R+   F   S     L  +A  H S +     S        LG+ +L  +   L+
Sbjct: 54  TELNRRLQKRFPELSRKRHILFTRAFIHPSFTAPEAASSTMNASIGLGESLLLSVGGRLV 113

Query: 60  FNHFDSAKEGELSVRFNSLVSAETCSQVARE-LDLASFIRVSSD---------------- 102
            + FD  +  E+    + L S    S + R   +L   +   +                 
Sbjct: 114 VSIFDDLRRDEVISLVSFLSSDAALSHLLRHHWELEDMVLTDASVQLFQPKATPSASNIV 173

Query: 103 --LRKDVCSFMTSIQ-ADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145
             L       +     A  V+++I A++LDGG+ +A  F+ ++  +
Sbjct: 174 SWLPDQRGKQVPDQYCAGAVKAVIGAVFLDGGLSLATQFIFQHVLE 219


>gi|34535081|dbj|BAC87202.1| unnamed protein product [Homo sapiens]
          Length = 454

 Score = 43.5 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 19/46 (41%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
           +   + L E  + +    PE+ +   SGPDH   F   V  +G   
Sbjct: 398 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 443


>gi|74001145|ref|XP_857102.1| PREDICTED: similar to SON protein isoform 12 [Canis familiaris]
          Length = 454

 Score = 43.5 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 19/46 (41%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
           +   + L E  + +    PE+ +   SGPDH   F   V  +G   
Sbjct: 398 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 443


>gi|224576607|gb|ACN56977.1| At1g01040-like protein [Capsella grandiflora]
 gi|224576611|gb|ACN56979.1| At1g01040-like protein [Capsella grandiflora]
          Length = 180

 Score = 43.5 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 46/142 (32%), Gaps = 52/142 (36%)

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-------------- 98
            ++S  LF  +    EG+L+     +VS     Q A    L S+I+              
Sbjct: 1   WVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQADRFAPSRWSAPGV 60

Query: 99  --------------------VSS--------DLRKDV------CSFM---TSIQADVVES 121
                               +S            +D        S+    +   ADVVE+
Sbjct: 61  PPVFDEDTKESSFFDEEQKPLSKENSDXFEDGEMEDGELEGDLSSYRVLSSKTLADVVEA 120

Query: 122 LIAALYLDGGIEVAGTFVDKYW 143
           LI   Y++GG ++A   +  + 
Sbjct: 121 LIGVYYVEGG-KIAANHLMTWI 141


>gi|149059854|gb|EDM10737.1| rCG58807, isoform CRA_c [Rattus norvegicus]
          Length = 454

 Score = 43.5 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 19/46 (41%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
           +   + L E  + +    PE+ +   SGPDH   F   V  +G   
Sbjct: 398 KHPVSALMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLRNGSPY 443


>gi|326509123|dbj|BAJ86954.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1247

 Score = 43.5 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 10/69 (14%)

Query: 156  DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD---CSKRAAE 212
            + K +LQ          P YK         +  F   VE +G+     +     +K+ AE
Sbjct: 1145 NPKNQLQTLLTRAGHDNPSYKTKQIK----NTLFRSTVEFNGMEF---VGQPCANKKLAE 1197

Query: 213  QVAAAEVLK 221
            + AA E + 
Sbjct: 1198 KDAAGEAIN 1206


>gi|312073196|ref|XP_003139411.1| dihydrouridine synthase domain-containing protein [Loa loa]
 gi|307765423|gb|EFO24657.1| dihydrouridine synthase domain-containing protein [Loa loa]
          Length = 439

 Score = 43.5 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 4/93 (4%)

Query: 133 EVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV 192
           E   +F+D  +  + LK        K  L  +        P Y+   R     D R+   
Sbjct: 338 ETGISFIDLTFPPKRLKDRSGAVTPKCILNAFCDESGIKRPVYQCKLR---ATDKRYEAT 394

Query: 193 VEISGLAPAQGMD-CSKRAAEQVAAAEVLKREG 224
           +E+     +  +   +K+ AEQVAA   L   G
Sbjct: 395 IEVDSRKFSSRIGQPNKKMAEQVAALAALVGLG 427


>gi|224576579|gb|ACN56963.1| At1g01040-like protein [Capsella grandiflora]
 gi|224576581|gb|ACN56964.1| At1g01040-like protein [Capsella grandiflora]
          Length = 180

 Score = 43.5 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 46/142 (32%), Gaps = 52/142 (36%)

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-------------- 98
            ++S  LF  +    EG+L+     +VS     Q A    L S+I+              
Sbjct: 1   WVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQADRFAPSRWSAPGV 60

Query: 99  --------------------VSS--------DLRKDV------CSFM---TSIQADVVES 121
                               +S            +D        S+    +   ADVVE+
Sbjct: 61  PPVFDEDTKESSFFDEEQKXLSKENSDVFEDGEMEDGELEGDLSSYRVLSSKTLADVVEA 120

Query: 122 LIAALYLDGGIEVAGTFVDKYW 143
           LI   Y++GG ++A   +  + 
Sbjct: 121 LIGVYYVEGG-KIAANHLMTWI 141


>gi|62088582|dbj|BAD92738.1| nuclear RNase III Drosha variant [Homo sapiens]
          Length = 432

 Score = 43.5 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 13/87 (14%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            L+K IGY F +R LL+ A+TH S  ++      + R     + +    I       +  
Sbjct: 329 HLDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHAR-----NSLSNCGI---RQPKYGD 380

Query: 66  AKEGELSVRFNSLVSAETCSQVARELD 92
            K   + +R   +    T   +   L 
Sbjct: 381 RKVHHMHMRKKGI---NTLINIMSRLG 404


>gi|68611225|emb|CAE03039.3| OSJNBa0084A10.14 [Oryza sativa Japonica Group]
 gi|116309362|emb|CAH66443.1| B0308C03.3 [Oryza sativa Indica Group]
          Length = 1439

 Score = 43.5 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 11/72 (15%)

Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
           +D  WK+     G   +  K  LQ++        P+Y          D +F   V +  L
Sbjct: 367 IDDIWKK-----GDSGKMPKAVLQKFCQKLGWEAPKYSKISEK----DRKFIYAVNV--L 415

Query: 199 APAQGMDCSKRA 210
             + G   S++A
Sbjct: 416 RGSTGRGKSRKA 427


>gi|125548350|gb|EAY94172.1| hypothetical protein OsI_15944 [Oryza sativa Indica Group]
          Length = 1439

 Score = 43.5 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 11/72 (15%)

Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
           +D  WK+     G   +  K  LQ++        P+Y          D +F   V +  L
Sbjct: 367 IDDIWKK-----GDSGKMPKAVLQKFCQKLGWEAPKYSKISEK----DRKFIYAVNV--L 415

Query: 199 APAQGMDCSKRA 210
             + G   S++A
Sbjct: 416 RGSTGRGKSRKA 427


>gi|148671307|gb|EDL03254.1| mCG115971 [Mus musculus]
          Length = 102

 Score = 43.5 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 13/87 (14%)

Query: 8  TLEKRIGYAFANRSLLEKALTHSS--ISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           L+K IGY F +R LL+ A+TH S  ++      + R     + +    I       +  
Sbjct: 20 HLDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHAR-----NSLSNCGI---RQPKYGD 71

Query: 66 AKEGELSVRFNSLVSAETCSQVARELD 92
           K   + +R   +    T   +   L 
Sbjct: 72 RKVHHMHMRKKGI---NTLINIMSRLG 95


>gi|125590442|gb|EAZ30792.1| hypothetical protein OsJ_14858 [Oryza sativa Japonica Group]
          Length = 1388

 Score = 43.5 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 11/72 (15%)

Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
           +D  WK+     G   +  K  LQ++        P+Y          D +F   V +  L
Sbjct: 367 IDDIWKK-----GDSGKMPKAVLQKFCQKLGWEAPKYSKISEK----DRKFIYAVNV--L 415

Query: 199 APAQGMDCSKRA 210
             + G   S++A
Sbjct: 416 RGSTGRGKSRKA 427


>gi|241615739|ref|XP_002406800.1| tRNA-dihydrouridine synthase, putative [Ixodes scapularis]
 gi|215500870|gb|EEC10364.1| tRNA-dihydrouridine synthase, putative [Ixodes scapularis]
          Length = 449

 Score = 43.5 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 25/79 (31%), Gaps = 14/79 (17%)

Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
             FV   ++   L         KT L  W        P YK   +        F  VV +
Sbjct: 356 AKFVRNMFEMSNL--------PKTTLINWTRKNNYPHPSYKTEAKE-----KSFRSVVVV 402

Query: 196 SGLAPAQGM-DCSKRAAEQ 213
                +    + SK+ AEQ
Sbjct: 403 DSKRYSSTFLEKSKKYAEQ 421


>gi|187447250|emb|CAO84939.1| ENSANGG00000009686 protein [Anopheles gambiae]
          Length = 197

 Score = 43.5 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V I+ L    G   SK+ A+  AA E L+
Sbjct: 1   TVTINELKYGTGYGTSKKQAKSEAARETLE 30


>gi|147794041|emb|CAN60109.1| hypothetical protein VITISV_044329 [Vitis vinifera]
          Length = 858

 Score = 43.5 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            V  +G     GM  +++ A+Q AA   L
Sbjct: 673 QVLFTGEKIGVGMGKTRKDAQQQAAENAL 701


>gi|270015916|gb|EFA12364.1| hypothetical protein TcasGA2_TC002070 [Tribolium castaneum]
          Length = 656

 Score = 43.5 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 52/189 (27%), Gaps = 26/189 (13%)

Query: 26  ALTHSSISHSYQESYERLEFLG-DRILGLLISTLLFNHFDSAKEGEL---SVRFNSLVSA 81
           A  H S     +     L   G D IL       +     +     L    +   + VS 
Sbjct: 487 AFRHRSFLCRKKGWNLCLMCGGRDAILPKW--RHVRIALRNLPPENLFQDQLVTATPVSG 544

Query: 82  ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG-GIEVAGTFVD 140
                      +   +      +              +E L+  + LD  G+        
Sbjct: 545 ----------GMGMHLLQKMGWKPGEGLGKEK--TGALEPLLLEVKLDKKGLVANEEQKK 592

Query: 141 KYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
           K  + +        +   + L E+A  K    P+Y + F  GPDH   F   V       
Sbjct: 593 KKKQGQGSTYTLQNKHPVSLLGEYASKKKLGAPQYDLCFECGPDHKKNFLFKV------- 645

Query: 201 AQGMDCSKR 209
            +    S +
Sbjct: 646 GEAQSRSIK 654


>gi|91082415|ref|XP_970120.1| PREDICTED: similar to tRNA-dihydrouridine synthase [Tribolium
           castaneum]
 gi|270007514|gb|EFA03962.1| hypothetical protein TcasGA2_TC014107 [Tribolium castaneum]
          Length = 455

 Score = 43.5 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 6/61 (9%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVA 215
            K+++  +        P+Y+         D  F  +    G   +    + +KR AEQ A
Sbjct: 377 PKSKIIAYCGKHKFDLPKYQTVNE-----DKLFRAIATFQGKKYSSSYWEKNKRFAEQGA 431

Query: 216 A 216
           A
Sbjct: 432 A 432


>gi|224076842|ref|XP_002305017.1| predicted protein [Populus trichocarpa]
 gi|222847981|gb|EEE85528.1| predicted protein [Populus trichocarpa]
          Length = 967

 Score = 43.5 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 7/65 (10%)

Query: 161 LQEWAHAKFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           LQE A  K G   E++  +   S    D +F++     G    +G   ++R A++ AA  
Sbjct: 725 LQEIA-MKCGTKVEFRPALIATS----DLQFSIETWFVGEKVGEGTGKTRREAQRQAAEG 779

Query: 219 VLKRE 223
            +K+ 
Sbjct: 780 SIKKL 784


>gi|297723167|ref|NP_001173947.1| Os04g0432300 [Oryza sativa Japonica Group]
 gi|255675478|dbj|BAH92675.1| Os04g0432300 [Oryza sativa Japonica Group]
          Length = 1114

 Score = 43.5 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 11/72 (15%)

Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
           +D  WK+     G   +  K  LQ++        P+Y          D +F   V +  L
Sbjct: 367 IDDIWKK-----GDSGKMPKAVLQKFCQKLGWEAPKYSKISEK----DRKFIYAVNV--L 415

Query: 199 APAQGMDCSKRA 210
             + G   S++A
Sbjct: 416 RGSTGRGKSRKA 427


>gi|187447260|emb|CAO84944.1| ENSANGG00000009686 protein [Anopheles gambiae]
 gi|187447264|emb|CAO84946.1| ENSANGG00000009686 protein [Anopheles gambiae]
 gi|187447268|emb|CAO84948.1| ENSANGG00000009686 protein [Anopheles gambiae]
          Length = 197

 Score = 43.5 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V I+ L    G   SK+ A+  AA E L+
Sbjct: 1   TVTINELKYGTGYGTSKKQAKSEAARETLE 30


>gi|187447242|emb|CAO84935.1| ENSANGG00000009686 protein [Anopheles gambiae]
          Length = 197

 Score = 43.5 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V I+ L    G   SK+ A+  AA E L+
Sbjct: 1   TVTINELKYGTGYGTSKKQAKSEAARETLE 30


>gi|187447226|emb|CAO84927.1| ENSANGG00000009686 protein [Anopheles arabiensis]
 gi|187447228|emb|CAO84928.1| ENSANGG00000009686 protein [Anopheles arabiensis]
 gi|187447230|emb|CAO84929.1| ENSANGG00000009686 protein [Anopheles arabiensis]
 gi|187447232|emb|CAO84930.1| ENSANGG00000009686 protein [Anopheles arabiensis]
 gi|187447234|emb|CAO84931.1| ENSANGG00000009686 protein [Anopheles arabiensis]
 gi|187447236|emb|CAO84932.1| ENSANGG00000009686 protein [Anopheles arabiensis]
 gi|187447238|emb|CAO84933.1| ENSANGG00000009686 protein [Anopheles gambiae]
 gi|187447244|emb|CAO84936.1| ENSANGG00000009686 protein [Anopheles gambiae]
 gi|187447246|emb|CAO84937.1| ENSANGG00000009686 protein [Anopheles gambiae]
 gi|187447248|emb|CAO84938.1| ENSANGG00000009686 protein [Anopheles gambiae]
 gi|187447252|emb|CAO84940.1| ENSANGG00000009686 protein [Anopheles gambiae]
 gi|187447254|emb|CAO84941.1| ENSANGG00000009686 protein [Anopheles gambiae]
 gi|187447256|emb|CAO84942.1| ENSANGG00000009686 protein [Anopheles gambiae]
 gi|187447258|emb|CAO84943.1| ENSANGG00000009686 protein [Anopheles gambiae]
 gi|187447262|emb|CAO84945.1| ENSANGG00000009686 protein [Anopheles gambiae]
 gi|187447266|emb|CAO84947.1| ENSANGG00000009686 protein [Anopheles gambiae]
          Length = 197

 Score = 43.5 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V I+ L    G   SK+ A+  AA E L+
Sbjct: 1   TVTINELKYGTGYGTSKKQAKSEAARETLE 30


>gi|299756402|ref|XP_002912199.1| hypothetical protein CC1G_13731 [Coprinopsis cinerea okayama7#130]
 gi|298411660|gb|EFI28705.1| hypothetical protein CC1G_13731 [Coprinopsis cinerea okayama7#130]
          Length = 79

 Score = 43.5 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 6/71 (8%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRS---GPDHDPRFTVVVEISGLAPAQGMDCSKR 209
              DA + L ++ +          ++++    GP HD ++T V +I G    +G    K 
Sbjct: 1   MSNDAISRLNQYLNKIGKAA---SLSWQECNYGPPHDSKWTCVCKIDGEPRGEGTSTHKH 57

Query: 210 AAEQVAAAEVL 220
            A+ +AA + L
Sbjct: 58  TAKNIAAEQAL 68


>gi|187447240|emb|CAO84934.1| ENSANGG00000009686 protein [Anopheles gambiae]
          Length = 197

 Score = 43.5 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            V I+ L    G   SK+ A+  AA E L+
Sbjct: 1   TVTINELKYGTGYGTSKKQAKSEAARETLE 30


>gi|297740849|emb|CBI31031.3| unnamed protein product [Vitis vinifera]
          Length = 931

 Score = 43.5 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 12/74 (16%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDP------------RFTVVVEISGLAPAQGMDCSKRAA 211
             H KFG    YKV    G   +              F   +++   +        K+ A
Sbjct: 19  IIHQKFGDKACYKVEEVQGDTQNGCPGLAIPQKGPCLFRCSLQLPEFSVVSEYFKRKKDA 78

Query: 212 EQVAAAEVLKREGI 225
           EQ AA + L++ G+
Sbjct: 79  EQSAAEKALRKLGV 92


>gi|328722076|ref|XP_003247474.1| PREDICTED: hypothetical protein LOC100169140 isoform 2
           [Acyrthosiphon pisum]
          Length = 342

 Score = 43.1 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 31/87 (35%), Gaps = 6/87 (6%)

Query: 137 TFVDKYWKQRALKSGKFRRDAKT--ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
             +    K +A    KF  D K    +Q     K GV     V     P     F V  E
Sbjct: 242 NVLKSPPKPKAGAMRKFPEDPKNCNPIQLINQMKPGVKFIETVISSKTPS---VFQVKCE 298

Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           I  + P  G   +K+AA++      +K
Sbjct: 299 IDNI-PFTGQGSTKKAAKKECCIAAIK 324


>gi|328722074|ref|XP_001945290.2| PREDICTED: hypothetical protein LOC100169140 isoform 1
           [Acyrthosiphon pisum]
          Length = 381

 Score = 43.1 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 31/87 (35%), Gaps = 6/87 (6%)

Query: 137 TFVDKYWKQRALKSGKFRRDAKT--ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVE 194
             +    K +A    KF  D K    +Q     K GV     V     P     F V  E
Sbjct: 281 NVLKSPPKPKAGAMRKFPEDPKNCNPIQLINQMKPGVKFIETVISSKTPS---VFQVKCE 337

Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           I  + P  G   +K+AA++      +K
Sbjct: 338 IDNI-PFTGQGSTKKAAKKECCIAAIK 363


>gi|157939656|ref|YP_001497028.1| dsRNA-binding [Tanapox virus]
 gi|146746372|gb|ABQ43508.1| dsRNA-binding [Tanapox virus]
 gi|146746528|gb|ABQ43663.1| dsRNA-binding [Tanapox virus]
          Length = 181

 Score = 43.1 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 13/70 (18%)

Query: 156 DAKTE-----LQEWAH---AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           + K +     L E+       + +         SG  H P FT  V ISG+     +  +
Sbjct: 103 NWKDKNPCIVLNEYCQFTCRDWSIDIT-----TSGKSHCPMFTATVIISGIKFKPAIGNT 157

Query: 208 KRAAEQVAAA 217
           KR A+  A+ 
Sbjct: 158 KREAKYNASK 167


>gi|12085017|ref|NP_073419.1| 34L protein [Yaba-like disease virus]
 gi|12056193|emb|CAC21272.1| 34L protein [Yaba-like disease virus]
          Length = 185

 Score = 43.1 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 13/70 (18%)

Query: 156 DAKTE-----LQEWAH---AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           + K +     L E+       + +         SG  H P FT  V ISG+     +  +
Sbjct: 107 NWKDKNPCIVLNEYCQFTCRDWSIDIT-----TSGKSHCPMFTATVIISGIKFKPAIGNT 161

Query: 208 KRAAEQVAAA 217
           KR A+  A+ 
Sbjct: 162 KREAKYNASK 171


>gi|255555995|ref|XP_002519032.1| double-stranded RNA binding protein, putative [Ricinus communis]
 gi|223541695|gb|EEF43243.1| double-stranded RNA binding protein, putative [Ricinus communis]
          Length = 978

 Score = 43.1 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +F+V    +G    +G   ++R A+ VAA   +K  
Sbjct: 752 QFSVEAWFAGERVGEGFGRTRREAQSVAAEASIKNL 787



 Score = 38.9 bits (90), Expect = 0.50,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 15/35 (42%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +      VEI G    +G+  +   A+  AA + L
Sbjct: 890 NAEVHAQVEIDGQVMGKGIGSTFDEAKMQAAEKAL 924


>gi|308070996|ref|YP_003872601.1| ribonuclease III [Paenibacillus polymyxa E681]
 gi|305860275|gb|ADM72063.1| Ribonuclease III [Paenibacillus polymyxa E681]
          Length = 152

 Score = 43.1 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 43/112 (38%), Gaps = 21/112 (18%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102
           L ++GD +  + +   L     + +   L  R   LVSA+  S++     L    +V ++
Sbjct: 34  LAYIGDAVYEVAVRQYLLAQ-PNLRPNHLHRRATGLVSAKAQSRM-----LGLLEKVLTE 87

Query: 103 LRKDVCSFMTSI---------------QADVVESLIAALYLDGGIEVAGTFV 139
             +D+     +                 A  +E LI +LY DG ++     +
Sbjct: 88  EERDIVRQGRNAKSGSLPKNADVLEYRHATALEGLIGSLYCDGHLDRLRELI 139


>gi|195478541|ref|XP_002100554.1| GE17129 [Drosophila yakuba]
 gi|194188078|gb|EDX01662.1| GE17129 [Drosophila yakuba]
          Length = 473

 Score = 43.1 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 6/69 (8%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVA 215
            KT+L   A       P Y+         D  F  +    G   +    + +K+ AEQ A
Sbjct: 395 PKTQLYVHAGKAGKSPPAYETQQC-----DKLFRSICSYDGQRFSSSFWEKNKKQAEQGA 449

Query: 216 AAEVLKREG 224
           A   L   G
Sbjct: 450 ALVALLHLG 458


>gi|82469804|gb|ABB77160.1| R2D2 [Drosophila mauritiana]
          Length = 302

 Score = 43.1 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 5/74 (6%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS- 207
           +     RD   EL+++        P  +V  +SG    P F     ++ +        S 
Sbjct: 79  EMTNLNRDMLKELRDYCVRHDMPLPCIEVVQQSGTPSAPEFVACCSVASIVR---YGKSD 135

Query: 208 -KRAAEQVAAAEVL 220
            K+ A Q AA E+L
Sbjct: 136 KKKDARQRAAIEML 149



 Score = 42.4 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 5/62 (8%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+        P Y      G D    F   VE+  +  A G   SKR A+ +AAA ++
Sbjct: 1   LHEFCAKTNNTPPTYHFIN--GEDGG--FVCKVELLEIE-ALGNGRSKRDAKHLAAANIM 55

Query: 221 KR 222
           ++
Sbjct: 56  RK 57


>gi|238577933|ref|XP_002388543.1| hypothetical protein MPER_12423 [Moniliophthora perniciosa FA553]
 gi|215449925|gb|EEB89473.1| hypothetical protein MPER_12423 [Moniliophthora perniciosa FA553]
          Length = 281

 Score = 43.1 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 17/127 (13%), Positives = 48/127 (37%), Gaps = 7/127 (5%)

Query: 28  THSS-----ISHSYQESYERLEFLGDRILGLLI-STLLFNHFDSAKEGELSVRFNSLVSA 81
           TH S     + ++     ERL  LG++I+ +++ +             ++       ++ 
Sbjct: 23  THKSLRKPGMQNTDWGDTERLALLGEKIMDMVVYAYFFKKGNPMRTAEQIRQDVADTLTP 82

Query: 82  ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141
           +  +    + +L   +R + ++  D              + + A++L  GI+   +++  
Sbjct: 83  QNFNLWLEQHELKYKLRSAPNVEPDPFQDPQE-LRHHFNTFVGAVFLSSGIDEVSSWIVS 141

Query: 142 YWKQRAL 148
                A+
Sbjct: 142 LLDPTAV 148


>gi|225444071|ref|XP_002264328.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 886

 Score = 43.1 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 12/74 (16%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDP------------RFTVVVEISGLAPAQGMDCSKRAA 211
             H KFG    YKV    G   +              F   +++   +        K+ A
Sbjct: 19  IIHQKFGDKACYKVEEVQGDTQNGCPGLAIPQKGPCLFRCSLQLPEFSVVSEYFKRKKDA 78

Query: 212 EQVAAAEVLKREGI 225
           EQ AA + L++ G+
Sbjct: 79  EQSAAEKALRKLGV 92


>gi|224576589|gb|ACN56968.1| At1g01040-like protein [Capsella grandiflora]
          Length = 180

 Score = 43.1 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 53 LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
           ++S  LF  +    EG+L+     +VS     Q A    L S+I+
Sbjct: 1  WVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 46


>gi|319803056|ref|NP_001188373.1| ATP-dependent RNA helicase A-like [Danio rerio]
          Length = 1270

 Score = 43.1 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQV 214
           D K  L  W   K  +TP Y     +G  +  +F   V +   +    G   +K+ A+  
Sbjct: 3   DIKNFLYAWC-GKKKLTPNYD-IRAAGNKNRQKFMCEVRVESYSYIGMGNSTNKKDAQSN 60

Query: 215 AAAE 218
           AA +
Sbjct: 61  AARD 64



 Score = 42.4 bits (99), Expect = 0.051,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI-----SGLAPAQGMDCSKRA 210
           +AK  L ++   +   T +YK   + GPDH+  F   + I          A+    +K+ 
Sbjct: 187 NAKARLNQFFQKEKNQT-DYK-YSQVGPDHNRSFIAEMTIFVRQLGRRVTAREHGSTKKL 244

Query: 211 AEQVAAAEVLKRE 223
           A Q  A  ++++ 
Sbjct: 245 AAQSCALSLVRQL 257


>gi|300681522|emb|CBH32617.1| ATP binding protein, putative, expressed [Triticum aestivum]
          Length = 1072

 Score = 43.1 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 10/68 (14%)

Query: 156  DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD---CSKRAAE 212
            + K +LQ          P YK         +  F   VE +G+     +     +K+ AE
Sbjct: 970  NPKNQLQTLLTRAGHDNPSYKTKQIK----NTLFRSTVEFNGMQF---VGQPCANKKLAE 1022

Query: 213  QVAAAEVL 220
            + AA E +
Sbjct: 1023 KDAAGEAI 1030


>gi|169154685|emb|CAQ13278.1| novel protein similar to vertebrate DEAH (Asp-Glu-Ala-His) box
           polypeptide 9 (DHX9) [Danio rerio]
          Length = 1271

 Score = 43.1 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQV 214
           D K  L  W   K  +TP Y     +G  +  +F   V +   +    G   +K+ A+  
Sbjct: 3   DIKNFLYAWC-GKKKLTPNYD-IRAAGNKNRQKFMCEVRVESYSYIGMGNSTNKKDAQSN 60

Query: 215 AAAE 218
           AA +
Sbjct: 61  AARD 64



 Score = 42.4 bits (99), Expect = 0.051,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI-----SGLAPAQGMDCSKRA 210
           +AK  L ++   +   T +YK   + GPDH+  F   + I          A+    +K+ 
Sbjct: 187 NAKARLNQFFQKEKNQT-DYK-YSQVGPDHNRSFIAEMTIFVRQLGRRVTAREHGSTKKL 244

Query: 211 AEQVAAAEVLKRE 223
           A Q  A  ++++ 
Sbjct: 245 AAQSCALSLVRQL 257


>gi|300123389|emb|CBK24662.2| unnamed protein product [Blastocystis hominis]
          Length = 326

 Score = 43.1 bits (101), Expect = 0.031,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           RF   V++ G    +G   S+R+A+  AA   L   G
Sbjct: 284 RFHAKVKVDGKMMGEGKGKSQRSAQGKAAWYALVELG 320


>gi|38229197|ref|NP_938290.1| 34L [Yaba monkey tumor virus]
 gi|38000468|gb|AAR07391.1| 34L [Yaba monkey tumor virus]
          Length = 184

 Score = 43.1 bits (101), Expect = 0.031,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 159 TELQEWAHAKFGV-TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAA 217
           T + E+        + E      +G  H P FT  V ISG+     +  +K+ A+  A+ 
Sbjct: 114 TVINEYCQLTSRDWSIE---VTTAGESHCPIFTASVIISGIKFKPEIGNTKKEAKHKASK 170

Query: 218 EVLK 221
             ++
Sbjct: 171 ITME 174


>gi|302697477|ref|XP_003038417.1| hypothetical protein SCHCODRAFT_103556 [Schizophyllum commune H4-8]
 gi|300112114|gb|EFJ03515.1| hypothetical protein SCHCODRAFT_103556 [Schizophyllum commune H4-8]
          Length = 74

 Score = 43.1 bits (101), Expect = 0.031,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 18/44 (40%)

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           GP+    +TV   I G         +K  A+  AA + L   G+
Sbjct: 29  GPNGTVVWTVKCNIRGETKGTASAPNKNTAKIEAAKQALAALGV 72


>gi|148226408|ref|NP_001087383.1| ATP-dependent RNA helicase A-like protein [Xenopus laevis]
 gi|71153340|sp|Q68FK8|DHX9_XENLA RecName: Full=ATP-dependent RNA helicase A-like protein; AltName:
           Full=DEAH box protein 9; AltName: Full=Nuclear DNA
           helicase II; Short=NDH II
 gi|51262114|gb|AAH79701.1| MGC81010 protein [Xenopus laevis]
          Length = 1262

 Score = 43.1 bits (101), Expect = 0.031,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQV 214
           D K  L  W   K  +TP Y+    +G  +  +F   V I G      G   +K+ A+  
Sbjct: 3   DIKNFLYAWC-GKKKLTPNYE-IRAAGNKNRQKFMCEVRIDGFNYIGMGNSTNKKDAQTN 60

Query: 215 AAAE 218
           +A +
Sbjct: 61  SARD 64



 Score = 42.8 bits (100), Expect = 0.040,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV----VE-ISGLAPAQGMDCSKRA 210
           +AK  L ++   +     EYK   + GPDH+  F       V+ +     A+    +K+ 
Sbjct: 183 NAKARLNQFFQKE-KTQGEYK-YSQVGPDHNRSFIAEMTLYVKQLGRKIIAREHGSNKKL 240

Query: 211 AEQVAAAEVLKRE 223
           A Q  A  ++++ 
Sbjct: 241 AAQSCALSIVRQL 253


>gi|242047516|ref|XP_002461504.1| hypothetical protein SORBIDRAFT_02g003680 [Sorghum bicolor]
 gi|241924881|gb|EER98025.1| hypothetical protein SORBIDRAFT_02g003680 [Sorghum bicolor]
          Length = 942

 Score = 43.1 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 10/71 (14%)

Query: 165 AHAKFGVTPEYKVTFRSG---------PDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQV 214
            H +FG    Y V              P     +   +++ GL+ A  G    K+ AEQ 
Sbjct: 12  VHQRFGAKARYTVEEVREAVGGCPGLAPQTRSVYRCALDLPGLSVATPGTFLRKKDAEQA 71

Query: 215 AAAEVLKREGI 225
           AA   L + GI
Sbjct: 72  AAQIALDKLGI 82


>gi|290562119|gb|ADD38456.1| 39S ribosomal protein L44, mitochondrial [Lepeophtheirus salmonis]
          Length = 328

 Score = 43.1 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 75/238 (31%), Gaps = 25/238 (10%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSI------------SHSYQESYERLEFLGDRIL 51
           +    L  R+  +F N  L+ +AL   +                 + S  RL  LG  ++
Sbjct: 74  VELFALGARLRESF-NFELVREALRDPTFYLVSMKEKIDLSLKDSEASNTRLVELGREVI 132

Query: 52  GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111
              ++  L   F       +      L+S    +  A  + L   + VS +         
Sbjct: 133 SASLNDFLTKTFPKVPSDGIIAFQEYLMSPYVLASKALHIGLKD-LVVSQEYPPS----- 186

Query: 112 TSIQADVVESLIAALYLDG-----GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAH 166
            +  ++   +LI A    G       ++    V        L      ++    L +   
Sbjct: 187 KNTLSNAFCALIGAHSESGNNRRQSYQLVVDLVATQIIGMDLHDVWKIQNPMDYLSKILA 246

Query: 167 AKFGVTPEYKVTFRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                 PE ++ + SG +     + V +  +     +    S   A  +AA + L+R 
Sbjct: 247 ENNMKEPEPRLQWASGKNTLSASYHVGIYSNQSLIGECTGESIETARDMAALDTLRRM 304


>gi|12597813|gb|AAG60124.1|AC073555_8 hypothetical protein [Arabidopsis thaliana]
          Length = 1167

 Score = 42.8 bits (100), Expect = 0.033,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 15/114 (13%)

Query: 115  QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA-----KTELQEWAHAKF 169
                +  L++    +G        +     ++    G   +++     K +LQ       
Sbjct: 1024 LMTAIRLLVSEDQCEGRFVYGRKALSPTPAKKLKDVGAQLQNSGGENNKNQLQTLLARAG 1083

Query: 170  GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC---SKRAAEQVAAAEVL 220
              +P YK         + +F  +V  +GL     M     SK+ AE+ AA E L
Sbjct: 1084 HGSPVYKTRQLK----NNQFRSMVTFNGLDF---MGKPCGSKKNAEKDAAHEAL 1130


>gi|30694379|ref|NP_175298.2| helicase domain-containing protein [Arabidopsis thaliana]
 gi|332194212|gb|AEE32333.1| DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana]
          Length = 1197

 Score = 42.8 bits (100), Expect = 0.033,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 15/114 (13%)

Query: 115  QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA-----KTELQEWAHAKF 169
                +  L++    +G        +     ++    G   +++     K +LQ       
Sbjct: 1054 LMTAIRLLVSEDQCEGRFVYGRKALSPTPAKKLKDVGAQLQNSGGENNKNQLQTLLARAG 1113

Query: 170  GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC---SKRAAEQVAAAEVL 220
              +P YK         + +F  +V  +GL     M     SK+ AE+ AA E L
Sbjct: 1114 HGSPVYKTRQLK----NNQFRSMVTFNGLDF---MGKPCGSKKNAEKDAAHEAL 1160


>gi|238478799|ref|NP_001154411.1| helicase domain-containing protein [Arabidopsis thaliana]
 gi|332194213|gb|AEE32334.1| DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana]
          Length = 1206

 Score = 42.8 bits (100), Expect = 0.033,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 15/114 (13%)

Query: 115  QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA-----KTELQEWAHAKF 169
                +  L++    +G        +     ++    G   +++     K +LQ       
Sbjct: 1054 LMTAIRLLVSEDQCEGRFVYGRKALSPTPAKKLKDVGAQLQNSGGENNKNQLQTLLARAG 1113

Query: 170  GVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC---SKRAAEQVAAAEVL 220
              +P YK         + +F  +V  +GL     M     SK+ AE+ AA E L
Sbjct: 1114 HGSPVYKTRQLK----NNQFRSMVTFNGLDF---MGKPCGSKKNAEKDAAHEAL 1160


>gi|82469808|gb|ABB77162.1| R2D2 [Drosophila pallidosa]
          Length = 293

 Score = 42.8 bits (100), Expect = 0.034,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAA 217
           EL+++        P  ++  + G  + P F    +++ L        S  K+ A Q AA 
Sbjct: 82  ELRDFCVRHEMPLPTIEIVQQCGTPNAPEFVACCKVASLTR---YGKSDKKKDARQRAAI 138

Query: 218 EVL 220
           E+L
Sbjct: 139 EML 141


>gi|219124880|ref|XP_002182722.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217406068|gb|EEC46009.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1021

 Score = 42.8 bits (100), Expect = 0.035,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           + L EW   +   TP + +  ++G   +  F VV+E  G     G  C+K AA+Q+AA  
Sbjct: 374 SALYEWCSKRQR-TPSF-LLQKAGYSGNFAFKVVLE-DGEEYGVGDGCTKIAAKQLAAKR 430

Query: 219 VLKRE 223
            L+  
Sbjct: 431 SLQAL 435


>gi|260835242|ref|XP_002612618.1| hypothetical protein BRAFLDRAFT_219680 [Branchiostoma floridae]
 gi|229297996|gb|EEN68627.1| hypothetical protein BRAFLDRAFT_219680 [Branchiostoma floridae]
          Length = 331

 Score = 42.8 bits (100), Expect = 0.035,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 18/39 (46%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
           +   + L E  + +  + PE+ +   SGPDH   F   V
Sbjct: 283 KHPVSALMEICNKRKWMPPEFVLVHDSGPDHKKNFLFKV 321


>gi|317149900|ref|XP_003190370.1| hypothetical protein AOR_1_1712114 [Aspergillus oryzae RIB40]
          Length = 651

 Score = 42.8 bits (100), Expect = 0.035,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 54/151 (35%), Gaps = 15/151 (9%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGD---RILGLLISTLLFNHFDSAK 67
           K + Y F + + L +ALT   +     +      +LGD    ++   +S   +      +
Sbjct: 12  KALDYQFKSDTRLIEALTAPGVEGEGSQGN---RWLGDFGIDVIRSCLSFYAYEE--KIR 66

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
             +++     L S +    VA+ + L   I  +             +    + ++IAA +
Sbjct: 67  PNKIASLKQKLCSYDHLMSVAQRITLDRVIIYNP----RSGKGRPIVVGKALAAIIAAAH 122

Query: 128 LDGGIEVAGTF-VDKYWKQRALKSGKFRRDA 157
           LD G     T+ + ++         +   D 
Sbjct: 123 LDCGRSYQTTWEILEHIG--FFDPERNGVDP 151


>gi|296808873|ref|XP_002844775.1| RNase III domain-containing protein [Arthroderma otae CBS 113480]
 gi|238844258|gb|EEQ33920.1| RNase III domain-containing protein [Arthroderma otae CBS 113480]
          Length = 258

 Score = 42.8 bits (100), Expect = 0.035,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 42/137 (30%), Gaps = 14/137 (10%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLL-------FNHFDSAKEGE------L 71
           +A+TH S     +   +RL +     L    +          F                 
Sbjct: 115 QAVTHKSFDQGRRGFNDRLAYFASLALVQNPAAYAPSAKADPFGRQPYESPALKGLEVLS 174

Query: 72  SVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQADVVESLIAALYLDG 130
               + L      + +AR   +   +R V         S + +I    + +++ A+ L+ 
Sbjct: 175 QDTRSRLTGRREMAALARHYGINDVMRWVPRKQHNLTESGVDTIYTHAMYAIVGAIALEN 234

Query: 131 GIEVAGTFVDKYWKQRA 147
           G +VA   V     +  
Sbjct: 235 GSKVANEIVRDRILKPL 251


>gi|296081073|emb|CBI18267.3| unnamed protein product [Vitis vinifera]
          Length = 1162

 Score = 42.8 bits (100), Expect = 0.036,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 13/78 (16%)

Query: 149  KSGKFRRD---AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVVEISGLAPAQG 203
             S +F +D    K+ LQ          P+YK        H     F  +VE  G+    G
Sbjct: 1026 DSNRFTKDGTNPKSLLQTLLMRAGHSPPKYKTK------HLKTNEFRALVEFKGMQ-FVG 1078

Query: 204  M-DCSKRAAEQVAAAEVL 220
                +K+ AE+ AA E L
Sbjct: 1079 KPKKNKQLAERDAAIEAL 1096


>gi|195435718|ref|XP_002065826.1| GK18553 [Drosophila willistoni]
 gi|194161911|gb|EDW76812.1| GK18553 [Drosophila willistoni]
          Length = 248

 Score = 42.8 bits (100), Expect = 0.037,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 152 KFRRD-AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
              RD  K EL E+  +     P +++  ++   + P+F     ++ +    G+   K+ 
Sbjct: 32  DPNRDMFK-ELCEFCKSHDMPYPVFEIVEQNRNPNAPKFVACCTLTSIKR-YGISDKKKE 89

Query: 211 AEQVAAAEVL 220
           A Q AA+ +L
Sbjct: 90  AHQKAASAIL 99


>gi|213403884|ref|XP_002172714.1| predicted protein [Schizosaccharomyces japonicus yFS275]
 gi|212000761|gb|EEB06421.1| predicted protein [Schizosaccharomyces japonicus yFS275]
          Length = 180

 Score = 42.8 bits (100), Expect = 0.037,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 54/153 (35%), Gaps = 10/153 (6%)

Query: 5   RYSTLEKRI----GYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           + S   K++     Y F +  L  + LTH S +H      E    +G   L L +     
Sbjct: 20  QVSEFYKKLFKTDNY-FESDELNLQLLTHKSFNHGQTPYNEGFRAIGRHALELSLINFSL 78

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQA---- 116
              +  K G   +   +    E  ++VA +  L   IR  +   +       S       
Sbjct: 79  QQTNQLK-GVSEMWLQNACRPENINKVAEQWGLQQVIRWKTPKLRASVDTKQSGLERVTF 137

Query: 117 DVVESLIAALYLDGGIEVAGTFVDKYWKQRALK 149
           D + ++I A+Y+  G   A  F  K      ++
Sbjct: 138 DTMLAIIGAVYMRKGARTAVDFCQKNLVPALIR 170


>gi|225470788|ref|XP_002269787.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1136

 Score = 42.8 bits (100), Expect = 0.037,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 13/78 (16%)

Query: 149  KSGKFRRD---AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVVEISGLAPAQG 203
             S +F +D    K+ LQ          P+YK        H     F  +VE  G+    G
Sbjct: 1026 DSNRFTKDGTNPKSLLQTLLMRAGHSPPKYKTK------HLKTNEFRALVEFKGMQ-FVG 1078

Query: 204  M-DCSKRAAEQVAAAEVL 220
                +K+ AE+ AA E L
Sbjct: 1079 KPKKNKQLAERDAAIEAL 1096


>gi|212535350|ref|XP_002147831.1| RNase III domain protein [Penicillium marneffei ATCC 18224]
 gi|210070230|gb|EEA24320.1| RNase III domain protein [Penicillium marneffei ATCC 18224]
          Length = 259

 Score = 42.8 bits (100), Expect = 0.038,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 50/146 (34%), Gaps = 30/146 (20%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF-------DSAKEGELSVRF-- 75
            A+TH S     +   +RL  LG RI+ L  S LL  +         S    +    F  
Sbjct: 108 LAVTHKSFDQGRRGFNDRLALLGKRIVQLQASLLLVQNPGNYKTQVPSLSVEDQHKTFKH 167

Query: 76  NSLVSAETC--------------SQVARELDLASFIRVSS----DLRKDVCSFMTSIQAD 117
            +L   E                S+VA +  L   +R +     DL     +    +   
Sbjct: 168 AALEGLENLTLDNRGWFTHKVNISRVAEKYGLLKVLRWAPVKPNDLEHSGLNV---VLTH 224

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYW 143
            + +++ A+ L+ G   A  F  +  
Sbjct: 225 TMYAIVGAIALERGGVEANEFARQRI 250


>gi|78767040|ref|YP_392494.1| NSP1 [Adult diarrheal rotavirus strain J19]
 gi|123851383|sp|Q45UF6|NSP1N_ROTJ1 RecName: Full=Non-structural protein 1; Short=NSP1
 gi|52854270|gb|AAU88188.1| non-structural protein NSP1 [Human rotavirus ADRV-N]
 gi|69145465|gb|AAZ03489.1| NSP1 [Adult diarrheal rotavirus strain J19]
          Length = 395

 Score = 42.8 bits (100), Expect = 0.039,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 2/61 (3%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E +     V P Y++       H   +        +   Q    SK+ A+  AA ++ 
Sbjct: 333 LNEHSQRYGFVQPTYEIIAVVSDGHH-SYQCTCYYKDMK-TQSTGPSKKNAKHQAAEQMF 390

Query: 221 K 221
           +
Sbjct: 391 R 391


>gi|67469017|ref|XP_650500.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
 gi|56467134|gb|EAL45114.1| hypothetical protein EHI_068740 [Entamoeba histolytica HM-1:IMSS]
          Length = 256

 Score = 42.8 bits (100), Expect = 0.039,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 43/121 (35%), Gaps = 20/121 (16%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTL---LFNHFDSAKEGELSVRFNSLV 79
           L +A      S   QE YE+ EF GD  L    S+L       ++       S      V
Sbjct: 36  LNQA-----YSSQDQE-YEKNEFYGDSYLEERASSLVLKFLRKYEQIPFEMYSGLRIHTV 89

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
             +T  ++   L L            D  +F    + D+VESLI    L    E A  F+
Sbjct: 90  KNQTLGEIFDLLHLG-----------DTKTFEKKKKGDLVESLIGGCVLLSQRENATLFL 138

Query: 140 D 140
            
Sbjct: 139 L 139


>gi|82469818|gb|ABB77167.1| R2D2 [Drosophila sechellia]
          Length = 289

 Score = 42.8 bits (100), Expect = 0.040,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAA 217
           EL+++        P  +V  +SG    P F     ++ +        S  K+ A Q AA 
Sbjct: 77  ELRDYCVRHDMPLPCIEVVQQSGTPSAPEFVACCSVASIVR---YGKSDKKKDARQRAAI 133

Query: 218 EVL 220
           E+L
Sbjct: 134 EML 136


>gi|167526006|ref|XP_001747337.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163774172|gb|EDQ87804.1| predicted protein [Monosiga brevicollis MX1]
          Length = 487

 Score = 42.8 bits (100), Expect = 0.041,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 21/65 (32%), Gaps = 6/65 (9%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC-SKRAAEQVA 215
            K  L  +        P +  T       + +F  V    G   A      ++R AEQ A
Sbjct: 402 PKEVLMAYTQRMQLEEPSFSSTPV-----NKKFVAVCHWLGEQYATSAGHGNRRYAEQAA 456

Query: 216 AAEVL 220
           A   L
Sbjct: 457 ALVAL 461


>gi|328862737|gb|EGG11837.1| hypothetical protein MELLADRAFT_76432 [Melampsora larici-populina
           98AG31]
          Length = 1308

 Score = 42.8 bits (100), Expect = 0.042,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 31/94 (32%), Gaps = 10/94 (10%)

Query: 131 GIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           G E A   V                D  + L      +       +++   G D   R T
Sbjct: 35  GEEQAAHEVLALILIHL-----AHYDPISRLTY----RSLPNITIRLSNSIG-DTLQRVT 84

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           VV +        G D SK+ AE++AA     + G
Sbjct: 85  VVADTGTNIIGTGDDPSKKEAEKLAALSACFQLG 118


>gi|85090664|ref|XP_958525.1| hypothetical protein NCU09826 [Neurospora crassa OR74A]
 gi|28919895|gb|EAA29289.1| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 267

 Score = 42.8 bits (100), Expect = 0.042,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 53/146 (36%), Gaps = 26/146 (17%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNH---------------FDSAKEG 69
            A+TH S  +  +    RL FLG +I+ L  +  +                  ++ A   
Sbjct: 123 LAVTHKSFDYGRRGYNTRLAFLGRQIIALETTRSILTSPVLNEPIVDKYGRTPYNHAALA 182

Query: 70  ELSVRFNS----LVSAETCSQVARELDLASFI----RVSSDLRKDVCSFMTSIQADVVES 121
            +     +    ++     +++  +  L + +    R+  DL       +  +    + +
Sbjct: 183 NIDKLIYTQPLDIMDKTKIARMGIDFGLLTVMRWKPRMPEDLESSG---VVVVLNSTLFA 239

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRA 147
           +I A+ L+ G  VA   V +   +R 
Sbjct: 240 IIGAISLEKGAAVAQRIVREKILKRL 265


>gi|322498652|emb|CBZ33724.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 888

 Score = 42.4 bits (99), Expect = 0.043,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 41/110 (37%), Gaps = 22/110 (20%)

Query: 31  SISHSYQESYERLEFLGDRILGLLISTLLFNHFDS------AKEGELSVRFNSLVSAETC 84
           S     + ++ERLE++GD   G  IS  +   +         +    ++  ++       
Sbjct: 249 SRYRRRRVAFERLEYIGDNCWGNNISNRILLLYPDQQWLYSERCSTFTLVRDACEMNVNL 308

Query: 85  SQVARELDLASFI------RVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
             V   L+L   +      R+ S            ++AD+VE +   L+L
Sbjct: 309 DFVFDTLELWHLLSTTAHSRLGSG----------KVKADLVEGIFGELHL 348


>gi|146085251|ref|XP_001465223.1| RNA editing complex protein MP90 [Leishmania infantum JPCM5]
 gi|134069320|emb|CAM67470.1| putative RNA editing complex protein MP90 [Leishmania infantum
           JPCM5]
          Length = 890

 Score = 42.4 bits (99), Expect = 0.043,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 41/110 (37%), Gaps = 22/110 (20%)

Query: 31  SISHSYQESYERLEFLGDRILGLLISTLLFNHFDS------AKEGELSVRFNSLVSAETC 84
           S     + ++ERLE++GD   G  IS  +   +         +    ++  ++       
Sbjct: 249 SRYRRRRVAFERLEYIGDNCWGNNISNRILLLYPDQQWLYSERCSTFTLVRDACEMNVNL 308

Query: 85  SQVARELDLASFI------RVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
             V   L+L   +      R+ S            ++AD+VE +   L+L
Sbjct: 309 DFVFDTLELWHLLSTTAHSRLGSG----------KVKADLVEGIFGELHL 348


>gi|157868579|ref|XP_001682842.1| RNA editing complex protein MP90; nuclease [Leishmania major strain
           Friedlin]
 gi|68126298|emb|CAJ03932.1| putative nuclease [Leishmania major strain Friedlin]
          Length = 890

 Score = 42.4 bits (99), Expect = 0.043,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 41/110 (37%), Gaps = 22/110 (20%)

Query: 31  SISHSYQESYERLEFLGDRILGLLISTLLFNHFDS------AKEGELSVRFNSLVSAETC 84
           S     + ++ERLE++GD   G  IS  +   +         +    ++  ++       
Sbjct: 249 SRYRQRRVAFERLEYIGDNCWGNNISNRILLLYPDQQWLYSERCSTFTLVRDACEMNVNL 308

Query: 85  SQVARELDLASFI------RVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
             V   L+L   +      R+ S            ++AD+VE +   L+L
Sbjct: 309 DFVFDTLELWHLLSTTAHSRLGSG----------KVKADLVEGIFGELHL 348


>gi|38073417|gb|AAR10830.1| MP90 [Leishmania major]
          Length = 1022

 Score = 42.4 bits (99), Expect = 0.043,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 41/110 (37%), Gaps = 22/110 (20%)

Query: 31  SISHSYQESYERLEFLGDRILGLLISTLLFNHFDS------AKEGELSVRFNSLVSAETC 84
           S     + ++ERLE++GD   G  IS  +   +         +    ++  ++       
Sbjct: 381 SRYRQRRVAFERLEYIGDNCWGNNISNRILLLYPDQQWLYSERCSTFTLVRDACEMNVNL 440

Query: 85  SQVARELDLASFI------RVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
             V   L+L   +      R+ S            ++AD+VE +   L+L
Sbjct: 441 DFVFDTLELWHLLSTTAHSRLGSG----------KVKADLVEGIFGELHL 480


>gi|167384956|ref|XP_001737156.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165900165|gb|EDR26576.1| hypothetical protein EDI_059550 [Entamoeba dispar SAW760]
          Length = 256

 Score = 42.4 bits (99), Expect = 0.043,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 43/121 (35%), Gaps = 20/121 (16%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTL---LFNHFDSAKEGELSVRFNSLV 79
           L +A      S   QE YE+ EF GD  L    S+L       ++       S      V
Sbjct: 36  LNQA-----YSSQDQE-YEKNEFYGDSYLEERASSLVLKFLRKYEQIPFEMYSGLRIHTV 89

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
             +T  ++   L L            D  +F    + D+VESLI    L    E A  F+
Sbjct: 90  KNQTLGEIFDLLHLG-----------DTKTFEKKKKGDLVESLIGGCVLLSQRENATLFL 138

Query: 140 D 140
            
Sbjct: 139 L 139


>gi|194770353|ref|XP_001967258.1| GF15959 [Drosophila ananassae]
 gi|190614534|gb|EDV30058.1| GF15959 [Drosophila ananassae]
          Length = 460

 Score = 42.4 bits (99), Expect = 0.044,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 6/69 (8%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVA 215
            KT+L   A       P Y+         D  F  +    G   +    + +K+ AEQ A
Sbjct: 382 PKTQLYVHAGKAGKNPPGYETQQC-----DKLFRAICSYDGQRFSSTFWEKNKKQAEQGA 436

Query: 216 AAEVLKREG 224
           A   L   G
Sbjct: 437 ALVALLHLG 445


>gi|328781456|ref|XP_623721.3| PREDICTED: 39S ribosomal protein L44, mitochondrial [Apis
           mellifera]
          Length = 313

 Score = 42.4 bits (99), Expect = 0.046,   Method: Composition-based stats.
 Identities = 45/247 (18%), Positives = 77/247 (31%), Gaps = 49/247 (19%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHS---------------YQESYERLEFL--GDRI 50
              +R+   F N   L +A  H S                     +S E  EF+  G  I
Sbjct: 65  AFNERLSEKF-NTEKLNQAFIHKSYIVEEVKKQKEIGIKEPLFNIQSNE--EFIKKGKEI 121

Query: 51  LGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSF 110
              +I   L  +  S  E  +    + L+S E  +  +  +     I             
Sbjct: 122 TSAVIKKYLNQNLSSLPENGIIAFHDYLMSQELLATASLHIGTKDIILTGEHPVSQE--- 178

Query: 111 MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQE-WAHAK- 168
                A    +L+ AL     +  AG FV  +     L +G   +D    L E W   K 
Sbjct: 179 ---TLAQTFLALVGALAESVDVNHAGIFVRDF-----LIAGLASKD----LTEIWCPTKP 226

Query: 169 -----------FGVTPEYKVTFRSGPDH-DPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
                        V  E ++  ++G +     + + +  +      G   +   A+ VAA
Sbjct: 227 FETLTDMISMERKVIIEARLIGQAGKNTILSVYHIGIYANKEYLGSGFGQTIAEAKDVAA 286

Query: 217 AEVLKRE 223
             +L + 
Sbjct: 287 INILSQM 293


>gi|322815868|gb|EFZ24386.1| RNA editing complex protein MP90, putative [Trypanosoma cruzi]
          Length = 826

 Score = 42.4 bits (99), Expect = 0.046,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 10/101 (9%)

Query: 34  HSYQESYERLEFLGDRILGLLISTLLFNHFDSA------KEGELSVRFNSLVSAETCSQV 87
           H  + ++ERLE++GD   G  +S  +   F              +   ++     T   +
Sbjct: 297 HRRRVAFERLEYIGDNSWGNHLSNRMMVLFPDRQWAYSQNAYSFNCFRDACEMNVTLEFM 356

Query: 88  ARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
              L ++  + +    +         I+ADVVE+LI  L++
Sbjct: 357 FDTLHVSELLPIGVREKLGTG----KIKADVVEALIGELHV 393


>gi|38073475|gb|AAR10847.1| MP90 [Trypanosoma cruzi]
          Length = 779

 Score = 42.4 bits (99), Expect = 0.046,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 10/101 (9%)

Query: 34  HSYQESYERLEFLGDRILGLLISTLLFNHFDSA------KEGELSVRFNSLVSAETCSQV 87
           H  + ++ERLE++GD   G  +S  +   F              +   ++     T   +
Sbjct: 249 HRRRVAFERLEYIGDNSWGNHLSNRMMVLFPDRQWAYSQNAYSFNCFRDACEMNVTLEFM 308

Query: 88  ARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
              L ++  + +    +         I+ADVVE+LI  L++
Sbjct: 309 FDTLHVSELLPIGVREKLGTG----KIKADVVEALIGELHV 345


>gi|71419843|ref|XP_811294.1| RNA editing complex protein MP90 [Trypanosoma cruzi strain CL
           Brener]
 gi|70875942|gb|EAN89443.1| RNA editing complex protein MP90, putative [Trypanosoma cruzi]
          Length = 779

 Score = 42.4 bits (99), Expect = 0.046,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 10/101 (9%)

Query: 34  HSYQESYERLEFLGDRILGLLISTLLFNHFDSA------KEGELSVRFNSLVSAETCSQV 87
           H  + ++ERLE++GD   G  +S  +   F              +   ++     T   +
Sbjct: 249 HRRRVAFERLEYIGDNSWGNHLSNRMMVLFPDRQWAYSQNAYSFNCFRDACEMNVTLEFM 308

Query: 88  ARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
              L ++  + +    +         I+ADVVE+LI  L++
Sbjct: 309 FDTLHVSELLPIGVREKLGTG----KIKADVVEALIGELHV 345


>gi|71411304|ref|XP_807907.1| RNA editing complex protein MP90 [Trypanosoma cruzi strain CL
           Brener]
 gi|70872004|gb|EAN86056.1| RNA editing complex protein MP90, putative [Trypanosoma cruzi]
          Length = 779

 Score = 42.4 bits (99), Expect = 0.046,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 10/101 (9%)

Query: 34  HSYQESYERLEFLGDRILGLLISTLLFNHFDSA------KEGELSVRFNSLVSAETCSQV 87
           H  + ++ERLE++GD   G  +S  +   F              +   ++     T   +
Sbjct: 249 HRRRVAFERLEYIGDNSWGNHLSNRMMVLFPDRQWAYSQNAYSFNCFRDACEMNVTLEFM 308

Query: 88  ARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
              L ++  + +    +         I+ADVVE+LI  L++
Sbjct: 309 FDTLHVSELLPIGVREKLGTG----KIKADVVEALIGELHV 345


>gi|260828967|ref|XP_002609434.1| hypothetical protein BRAFLDRAFT_124637 [Branchiostoma floridae]
 gi|229294790|gb|EEN65444.1| hypothetical protein BRAFLDRAFT_124637 [Branchiostoma floridae]
          Length = 1237

 Score = 42.4 bits (99), Expect = 0.049,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 3/64 (4%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQV 214
           D K  L  W   K  +TP Y     +G     RF   V + G      G   SK+ A+  
Sbjct: 3   DLKNFLYAWC-GKKKITPNYDF-RAAGSKQRQRFVCEVRVPGYDYVGAGNSTSKKDAQTN 60

Query: 215 AAAE 218
           AA +
Sbjct: 61  AARD 64



 Score = 37.4 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-----AQGMDCSKRA 210
           +AK  L ++         +Y+    +GPDH+  F   + I          A+     K+ 
Sbjct: 142 NAKQRLHQFMQQNRIQA-DYR-YSPTGPDHNRSFVAEMTIFVKQLHRNISAREHGFHKKI 199

Query: 211 AEQVAAAEVLKRE 223
           A Q AA  ++++ 
Sbjct: 200 AAQSAALSLVRQL 212


>gi|15220196|ref|NP_178180.1| RTL1 (RNase three-like protein 1); RNA binding / double-stranded
           RNA binding [Arabidopsis thaliana]
 gi|75264856|sp|Q9M8N2|RTL1_ARATH RecName: Full=Ribonuclease 3-like protein 1; AltName:
           Full=Ribonuclease III-like protein 1; Short=RNase
           III-like protein 1; AltName: Full=Ribonuclease
           three-like protein 1
 gi|6730736|gb|AAF27126.1|AC018849_14 hypothetical protein; 4021-3030 [Arabidopsis thaliana]
 gi|26449780|dbj|BAC42013.1| unknown protein [Arabidopsis thaliana]
 gi|28950719|gb|AAO63283.1| At1g80650 [Arabidopsis thaliana]
 gi|332198311|gb|AEE36432.1| RNAse THREE-like protein 1 [Arabidopsis thaliana]
          Length = 198

 Score = 42.4 bits (99), Expect = 0.049,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 21/51 (41%)

Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
           +  +S   R  AK+ L E   +K    P Y+     GP H   FT  V + 
Sbjct: 104 KDDESKTRRGSAKSVLHEMCASKRWRPPVYECCNVDGPCHLRLFTYKVMVE 154


>gi|268570080|ref|XP_002640687.1| Hypothetical protein CBG19749 [Caenorhabditis briggsae]
 gi|187023917|emb|CAP36964.1| hypothetical protein CBG_19749 [Caenorhabditis briggsae AF16]
          Length = 436

 Score = 42.4 bits (99), Expect = 0.049,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 23/70 (32%), Gaps = 5/70 (7%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD-CSKRAAEQVA 215
            K  L ++          Y+   R     D RF     I       G+   + R AEQVA
Sbjct: 360 PKMVLHDYLVETKTPKATYETVKRE----DKRFVSTAIIGDKKFRSGIGQPNLRMAEQVA 415

Query: 216 AAEVLKREGI 225
           A   L    I
Sbjct: 416 ALAALHGMNI 425


>gi|322491388|emb|CBZ26657.1| putative RNA editing complex protein MP90 [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 895

 Score = 42.4 bits (99), Expect = 0.050,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 13/110 (11%)

Query: 28  THSSISHSYQES---YERLEFLGDRILGLLISTLLFNHFDS------AKEGELSVRFNSL 78
           T  S +  Y+     +ERLE++GD   G  IS  +   +         +    ++  ++ 
Sbjct: 244 TVGSCNSHYRRRRVAFERLEYIGDNCWGNNISNRILLLYPDQQWLYSERCSTFTLVRDAC 303

Query: 79  VSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
                   V   L+L   +  ++  R         ++AD+VE +   L+L
Sbjct: 304 EMNVNLDFVFDTLELWHLLSTTAHSRLGNG----KVKADLVEGIFGELHL 349


>gi|255719938|ref|XP_002556249.1| KLTH0H08624p [Lachancea thermotolerans]
 gi|238942215|emb|CAR30387.1| KLTH0H08624p [Lachancea thermotolerans]
          Length = 238

 Score = 42.4 bits (99), Expect = 0.050,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 62/157 (39%), Gaps = 19/157 (12%)

Query: 21  SLLEKALTHSSISHSYQESYERLEFLGDRILGLLIS-TLLFNHFDSAKEGE--------- 70
            ++ + LTH S +H  +   E+L  LG + L    S   L +    +   E         
Sbjct: 81  DIILQCLTHKSFAHGSKPYNEKLAALGMQFLKYHTSVHSLRSAKPLSPVAEGKNQKSING 140

Query: 71  ------LSVRFNSLVSAETCSQVARELDLASFIRVSS--DLRKDVCSFMTSIQADVVESL 122
                  +     L++ +T +QV R   L S I       L+ +  +  T++ + V+ +L
Sbjct: 141 LNFTNLGTQLSKLLIAKKTTAQVIRSRHLDSLIFWKKRDPLKNESFNGETTVYSGVLSAL 200

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKT 159
           +  + +  G +    F++K       ++   +  AKT
Sbjct: 201 VGGILVTNGPQKTSQFIEKELLDPKKEASLVQI-AKT 236


>gi|146318846|ref|YP_001198558.1| dsRNA-specific ribonuclease [Streptococcus suis 05ZYH33]
 gi|145689652|gb|ABP90158.1| dsRNA-specific ribonuclease [Streptococcus suis 05ZYH33]
          Length = 42

 Score = 42.4 bits (99), Expect = 0.052,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 6  YSTLEKRIGYAFANRSLLEKALTHSSISHSYQ 37
          ++ L    G  F++ +LLE A TH+S ++ ++
Sbjct: 5  HAKLLADFGIDFSDLNLLETAFTHTSYANEHR 36


>gi|76155978|gb|AAX27226.2| SJCHGC08917 protein [Schistosoma japonicum]
          Length = 256

 Score = 42.4 bits (99), Expect = 0.053,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 5/101 (4%)

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           +Y +G    +   V     +R           K  L E        +P+Y+         
Sbjct: 147 IYEEGIKNNSEEIVLSIPYERRFWPD-HGTSPKQILSEHCKLLKWDSPKYETVENR---E 202

Query: 186 DPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREGI 225
              F   V + G          +K+ AEQ AA   L+  G+
Sbjct: 203 KRSFFSAVLVDGRRYRNTSSCKTKKYAEQAAALVCLQVLGL 243


>gi|268573078|ref|XP_002641516.1| C. briggsae CBR-RDE-4 protein [Caenorhabditis briggsae]
 gi|187031301|emb|CAP29362.1| CBR-RDE-4 protein [Caenorhabditis briggsae AF16]
          Length = 390

 Score = 42.4 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 16/100 (16%)

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           +D  I  A +F                ++    LQE         P Y+ +         
Sbjct: 157 VDKSIPTAKSF----------PENVPEKNYVGALQEKCQKHKLEAPAYEDSKIEATS--- 203

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK--REGI 225
            F V   +      +G+    + A+ +AA  +LK   EG+
Sbjct: 204 EFMVTCTMGNQQ-TRGIKPKIKLAKNLAAWLMLKTLEEGV 242


>gi|212722406|ref|NP_001131481.1| hypothetical protein LOC100192817 [Zea mays]
 gi|194691644|gb|ACF79906.1| unknown [Zea mays]
 gi|195623306|gb|ACG33483.1| double-stranded RNA binding motif family protein [Zea mays]
          Length = 184

 Score = 42.4 bits (99), Expect = 0.055,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 11/76 (14%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT--VVVEISGLAPAQGMDCS-----KRAA 211
           + L +   A     P +      GP H+  FT  V V + GL        S     K+AA
Sbjct: 92  SRLPKICKAAGWKEPSFDF-EEQGPPHNRIFTCKVTVHLDGLVNTIMECFSDPKPKKKAA 150

Query: 212 EQVAAAEV---LKREG 224
            + AA      L+R G
Sbjct: 151 RENAAQGALWCLERSG 166


>gi|168058998|ref|XP_001781492.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162667033|gb|EDQ53672.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1100

 Score = 42.0 bits (98), Expect = 0.056,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 50/133 (37%), Gaps = 12/133 (9%)

Query: 96   FIRVSSDLRKDVCSFMTSIQADVVES---LIAALY--LDGG-IEVAGTFVDKYWKQRALK 149
            ++R+  +L   +   + + +  + E    L+ A++  LD    E + TF  K    + L 
Sbjct: 961  YLRLRKELDDLISRKLANPEMSIYEEGKVLMRAVFEVLDADQCEGSFTFGRKVKASKPLT 1020

Query: 150  SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSK 208
                  D K  LQ          P Y+     G      +   +E+ G     G    SK
Sbjct: 1021 RSSDSSDVKGLLQTLLLRAGKKPPVYRTRMVKGN----LYQSSIEVKGRG-FTGDPASSK 1075

Query: 209  RAAEQVAAAEVLK 221
            + AE+  +A  L+
Sbjct: 1076 KVAEKNVSAMALE 1088


>gi|145361138|ref|NP_680142.2| ATP binding / ATP-dependent helicase/ double-stranded RNA binding /
            helicase/ nucleic acid binding [Arabidopsis thaliana]
 gi|10178028|dbj|BAB11511.1| ATP-dependent RNA helicase A-like protein [Arabidopsis thaliana]
 gi|332003418|gb|AED90801.1| DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana]
          Length = 1161

 Score = 42.0 bits (98), Expect = 0.056,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 47/150 (31%), Gaps = 21/150 (14%)

Query: 81   AETCSQVAREL--DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF 138
                ++   +L  +L   ++   +                V+ L+A    +G        
Sbjct: 981  DPNLAESYVKLKEELDKLLQKKLEDPSMDIHKEGKYLMLAVQELVAGDQCEGRFVFGRD- 1039

Query: 139  VDKYWKQRALKSGKFRRD---AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVV 193
              K   Q  +   K  +D    K+ LQ          P+YK        H     F  +V
Sbjct: 1040 -TKRPSQPQIGENKHSKDGTNPKSLLQTLLMRAGHSPPKYKTK------HLKTNEFRALV 1092

Query: 194  EISGLAPAQGMD---CSKRAAEQVAAAEVL 220
            E  G+     +     +K  AE+ AA E L
Sbjct: 1093 EFKGMQF---VGKPQRNKTLAEKDAAVEAL 1119


>gi|195566706|ref|XP_002106918.1| GD17163 [Drosophila simulans]
 gi|194204313|gb|EDX17889.1| GD17163 [Drosophila simulans]
          Length = 460

 Score = 42.0 bits (98), Expect = 0.056,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 23/69 (33%), Gaps = 6/69 (8%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVA 215
            KT+L   A       P Y+         D  F  +        +    + +K+ AEQ A
Sbjct: 382 PKTQLYVHAVKAGKSPPAYETQQC-----DKLFRSICTYDDQRFSSSYWEKNKKQAEQGA 436

Query: 216 AAEVLKREG 224
           A   L   G
Sbjct: 437 ALVALLHLG 445


>gi|123875484|sp|Q0H8C5|NSP1N_ROTB2 RecName: Full=Non-structural protein 1; Short=NSP1
 gi|77020780|gb|ABA60392.1| non-structural protein NSP1 [Human rotavirus B219]
          Length = 395

 Score = 42.0 bits (98), Expect = 0.056,   Method: Composition-based stats.
 Identities = 18/144 (12%), Positives = 42/144 (29%), Gaps = 20/144 (13%)

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGG---IEVAGT 137
               +    E +L S +  ++           SI+       I   +L       ++   
Sbjct: 265 ERVLNYKICEENLDSHLACANHENVY-----KSIKKYEFFDSIWVYHLANSSWVRDLTRE 319

Query: 138 FVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197
            ++       ++           L E +     + P Y++       H   +        
Sbjct: 320 CIESNPGPNYIQ----------LLNEHSQRYGFIQPTYEIIAVVSDGHH-SYQCTCYYKD 368

Query: 198 LAPAQGMDCSKRAAEQVAAAEVLK 221
               Q +  SK+ A+  AA ++ +
Sbjct: 369 TK-TQSIGPSKKNAKHQAAEQMFR 391


>gi|73979761|ref|XP_540087.2| PREDICTED: similar to spermatid perinuclear RNA-binding protein
           isoform 2 [Canis familiaris]
          Length = 152

 Score = 42.0 bits (98), Expect = 0.056,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y++    G  HD  F + VE+ G    +G   +
Sbjct: 49  KNPIMELNEKRRGL--KYELLSEPGGSHDKHFVMEVEVDGQK-FRGAGPN 95


>gi|255546785|ref|XP_002514451.1| ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223546447|gb|EEF47947.1| ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 1129

 Score = 42.0 bits (98), Expect = 0.057,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 13/83 (15%)

Query: 144  KQRALKSGKFRRD---AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVVEISGL 198
            K +     +F +D    K+ LQ          P+YK        H     F  +VE  G+
Sbjct: 1014 KPKESSESRFTKDGTNPKSLLQTLLMRAGHSPPKYKTK------HLKTNEFRALVEFKGM 1067

Query: 199  APAQGM-DCSKRAAEQVAAAEVL 220
                G    +K+ AE+ AA E L
Sbjct: 1068 Q-FVGKPKKNKQLAERDAAIEAL 1089


>gi|315583578|pdb|3P1X|A Chain A, Crystal Structure Of Drbm 2 Domain Of Interleukin
           Enhancer-Binding Factor 3 From Homo Sapiens, Northeast
           Structural Genomics Consortium Target Hr4527e
 gi|315583579|pdb|3P1X|B Chain B, Crystal Structure Of Drbm 2 Domain Of Interleukin
           Enhancer-Binding Factor 3 From Homo Sapiens, Northeast
           Structural Genomics Consortium Target Hr4527e
          Length = 75

 Score = 42.0 bits (98), Expect = 0.059,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             +  K  + E    + G+  +Y++   +G  HD RF   VE+ G    QG   +
Sbjct: 2   LTKHGKNPVXELNEKRRGL--KYELISETGGSHDKRFVXEVEVDGQK-FQGAGSN 53


>gi|118365014|ref|XP_001015728.1| Double-stranded RNA binding motif family protein [Tetrahymena
           thermophila]
 gi|89297495|gb|EAR95483.1| Double-stranded RNA binding motif family protein [Tetrahymena
           thermophila SB210]
          Length = 755

 Score = 42.0 bits (98), Expect = 0.059,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           F+  + I G    +G+  SK+ A + A+   L + G
Sbjct: 248 FSSYLIIDGKHYPKGIGKSKKDAREEASMNALAKMG 283


>gi|159163149|pdb|1UIL|A Chain A, Double-Stranded Rna-Binding Motif Of Hypothetical Protein
           Bab28848
          Length = 113

 Score = 42.0 bits (98), Expect = 0.060,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-----DCSKRA 210
           +AK  L ++   +  +  EYK T   GPDH+  F   + I      + +       +K+ 
Sbjct: 27  NAKARLNQYFQKE-KIQGEYKYTQV-GPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKL 84

Query: 211 AEQVAAAEVLKRE 223
           A Q  A  ++++ 
Sbjct: 85  AAQSCALSLVRQL 97


>gi|303319779|ref|XP_003069889.1| RNase3 domain containing protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240109575|gb|EER27744.1| RNase3 domain containing protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|320034181|gb|EFW16126.1| hypothetical protein CPSG_07176 [Coccidioides posadasii str.
           Silveira]
          Length = 267

 Score = 42.0 bits (98), Expect = 0.062,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 54/145 (37%), Gaps = 22/145 (15%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN-------------------HFDS 65
           +A+TH S     +   +RL +LG +++ L  +  L                        S
Sbjct: 116 QAVTHKSFDQGRRGFNDRLAYLGKQLVTLQATLALIQDPASYSQKLPADPYNRTPFQHPS 175

Query: 66  AKEGEL--SVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQADVVESL 122
            +  E+  S    +L+S +  + + R+ +L   +R +         S ++ +    + ++
Sbjct: 176 LEGLEVLSSPTLETLMSKKRLAALGRQYELDGVMRWIPRKPSDFQLSGISVVLTQAMYAV 235

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA 147
           + A+ L+ G  VA         +  
Sbjct: 236 VGAVALEKGGAVANQVARNRILKPL 260


>gi|119183345|ref|XP_001242722.1| hypothetical protein CIMG_06618 [Coccidioides immitis RS]
          Length = 267

 Score = 42.0 bits (98), Expect = 0.062,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 54/145 (37%), Gaps = 22/145 (15%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN-------------------HFDS 65
           +A+TH S     +   +RL +LG +++ L  +  L                        S
Sbjct: 116 QAVTHKSFDQGRRGFNDRLAYLGKQLVTLQATLALIQDPASYSQKLPADPYNRTPFQHPS 175

Query: 66  AKEGEL--SVRFNSLVSAETCSQVARELDLASFIR-VSSDLRKDVCSFMTSIQADVVESL 122
            +  E+  S    +L+S +  + + R+ +L   +R +         S ++ +    + ++
Sbjct: 176 LEGLEVLSSPTLETLMSKKRLAALGRQYELDGVMRWIPRKPSDFQLSGISVVLTQAMYAV 235

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRA 147
           + A+ L+ G  VA         +  
Sbjct: 236 VGAVALEKGGAVANQVARNRILKPL 260


>gi|297842797|ref|XP_002889280.1| hypothetical protein ARALYDRAFT_316895 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297335121|gb|EFH65539.1| hypothetical protein ARALYDRAFT_316895 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 190

 Score = 42.0 bits (98), Expect = 0.065,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 17/40 (42%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
           AK+ L E   +K    P Y+     GP H   FT  V + 
Sbjct: 97  AKSVLHEICASKRWRPPVYECCKVDGPCHLRLFTYKVVVE 136


>gi|297806475|ref|XP_002871121.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316958|gb|EFH47380.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1160

 Score = 42.0 bits (98), Expect = 0.065,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 39/116 (33%), Gaps = 19/116 (16%)

Query: 113  SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD---AKTELQEWAHAKF 169
                  V+ L+A    +G          K   Q+ +   K  +D    K+ LQ       
Sbjct: 1018 KYLMLAVQELVAGDQCEGRFVFGRD--TKRPSQQQIGENKHSKDGTNPKSLLQTLLMRAG 1075

Query: 170  GVTPEYKVTFRSGPDHDPR--FTVVVEISGLAPAQGMD---CSKRAAEQVAAAEVL 220
               P+YK        H     F  +VE  G+     +     +K  AE+ AA E L
Sbjct: 1076 HSPPKYKTK------HLKTNEFRALVEFKGMQF---VGKPQRNKTLAEKDAAVEAL 1122


>gi|224060035|ref|XP_002194744.1| PREDICTED: similar to mitochondrial ribosomal protein L44
           [Taeniopygia guttata]
          Length = 327

 Score = 42.0 bits (98), Expect = 0.066,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 63/213 (29%), Gaps = 40/213 (18%)

Query: 21  SLLEKALTHSSISHSYQESYERLEFLG---DRI-----------------LGLLISTLLF 60
            LL+ A  +     S +    RL  LG   D +                     ++    
Sbjct: 81  DLLKTAFVNPCYIESEEA---RLRQLGRDKDAVALQLQDNTGLAERGLRFARAYLAQCFE 137

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTS---IQAD 117
             +       +    N L S E  S VA+ L +              C    +   +   
Sbjct: 138 GAYPELPAKGVEALVNFLTSQELVSYVAQNLSIQDLAL---------CRDFPAPPDVLQR 188

Query: 118 VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR----RDAKTELQEWAHAKFGVTP 173
              ++I AL    G E  G FV  ++  + +    F      +    L E    +    P
Sbjct: 189 TFLAVIGALLESSGPERTGIFVRDFFIPQLIGKDLFEIWKVVNPMGLLLEELTKRNISAP 248

Query: 174 EYKVTFRSGPDH-DPRFTVVVEISGLAPAQGMD 205
           E ++T + G     P + V +       A+G  
Sbjct: 249 EPRITRQLGVSTVLPVYFVGLYCDKKILAEGPG 281


>gi|45187851|ref|NP_984074.1| ADL023Wp [Ashbya gossypii ATCC 10895]
 gi|44982635|gb|AAS51898.1| ADL023Wp [Ashbya gossypii ATCC 10895]
          Length = 228

 Score = 42.0 bits (98), Expect = 0.066,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 49/135 (36%), Gaps = 15/135 (11%)

Query: 21  SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
            +L + LTH S ++S +   E+L  LG ++L    S  L      A   +        V+
Sbjct: 72  DILLQCLTHKSFANSAKPYNEKLSLLGGQLLKWYAS-ALTVQQPGAAGVQQKPVNGLNVA 130

Query: 81  A------------ETCSQVARELDLASFIRVSSDLRKDVCSFM--TSIQADVVESLIAAL 126
                        +  S+  R  D+   I  +    +    F     ++  V+++LI + 
Sbjct: 131 NLGHEPYTLWTDSKVISEHMRTRDVDDLIFWNKRDSRATEKFNGLPKVRTTVLQALIGSS 190

Query: 127 YLDGGIEVAGTFVDK 141
               G E    FV +
Sbjct: 191 LTFNGEEKTAKFVLE 205


>gi|310644225|ref|YP_003948984.1| ribonuclease iii [Paenibacillus polymyxa SC2]
 gi|309249176|gb|ADO58743.1| Ribonuclease III [Paenibacillus polymyxa SC2]
          Length = 152

 Score = 42.0 bits (98), Expect = 0.067,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 21/112 (18%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102
           L ++GD +  + +   L  H  + +   L  R   LVSA+      R L L   +   +D
Sbjct: 34  LAYIGDAVYEVAVRQYLLAH-PNLRPNHLHRRATKLVSAKA---QCRILGLLETVL--TD 87

Query: 103 LRKDVCSFMTSI---------------QADVVESLIAALYLDGGIEVAGTFV 139
             +D+     +                 A  +E LI  LY DG ++     +
Sbjct: 88  EERDIVRQGRNAKSGSLPKNADVLEYRHATALEGLIGYLYCDGHLDRLTELI 139


>gi|115613122|ref|XP_001177698.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115975098|ref|XP_001191759.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 321

 Score = 42.0 bits (98), Expect = 0.067,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 69/223 (30%), Gaps = 29/223 (13%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
              +R G  F N   +  A TH S     ++S  R E +G           L +     +
Sbjct: 79  AFCQRFGEEF-NGETVRTAFTHKSYVEKEEKS--RRE-MG-----------LLDQDAKLQ 123

Query: 68  EGELSVRFNSLV--SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
             + +   N+    S++  +   R   L           +      T I   + +  +  
Sbjct: 124 LDDNTQLVNAGYQFSSDYIAGYLRH-ALPKVPEEGYRRMEKKNYKYTKIHTKMNKDNV-- 180

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGK----FRRDAKTELQEWAHAKFGVTPEYKVTFRS 181
                G++ AG FV  +   + +           +  + L +    +    PE ++   +
Sbjct: 181 ----KGMDRAGLFVRDFIIPQLMDKDLCDVWLIDNPMSLLVQVLADQQREEPEARLLREA 236

Query: 182 GPD-HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           G +   P F V +             S   AE  AA   L+  
Sbjct: 237 GKNTFTPLFMVGIYSDKKLLGWAPGESVTIAEDEAARVALRNL 279


>gi|291224210|ref|XP_002732100.1| PREDICTED: mitochondrial ribosomal protein L44-like [Saccoglossus
           kowalevskii]
          Length = 372

 Score = 42.0 bits (98), Expect = 0.067,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 57/211 (27%), Gaps = 28/211 (13%)

Query: 19  NRSLLEKALTHSSISHS-----------------YQESYERLEFLGDRILGLLISTLLFN 61
           N   L  A  H   +                        E L   G       I + L +
Sbjct: 98  NVETLRAAFNHREYTEDEAAKRRELRMDENIPLLNIPDNEELAEKGFIFSSEYIKSYLRS 157

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +    +  +    N L   E    + R L +   IR               I      +
Sbjct: 158 AYPKFPDEGVKSVSNYLTDVEISCHIGRNLGVYDLIRYPEFP------HPEEIIQKTFFA 211

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR----RDAKTELQEWAHAKFGVTPEYKV 177
           +I +L  D G +  G FV  +   + +     R     D    L ++   +    PE ++
Sbjct: 212 VIGSLLQDKGADRTGIFVRDFILAQLIGKDINRFWDILDPMKRLSDYLETQKQELPESRI 271

Query: 178 TFRSGPDHD-PRFTVVVEISGLAPAQGMDCS 207
             +SG       + V V  +          S
Sbjct: 272 IRQSGASTLVAMYIVGVYSNKQILGFAPGVS 302


>gi|290562111|gb|ADD38452.1| Double-stranded RNA-specific editase 1 [Lepeophtheirus salmonis]
          Length = 296

 Score = 42.0 bits (98), Expect = 0.067,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 7/77 (9%)

Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205
           + L      R     L E    + GV   Y +     P     F + V + G    +G  
Sbjct: 216 KKLPDNPTERHPVQLLNEI---QGGVN--YALVREK-PTTPVIFVMSVTVDG-VTFEGEG 268

Query: 206 CSKRAAEQVAAAEVLKR 222
            +K+ +++  A   LK+
Sbjct: 269 KNKKDSKRNCALAALKK 285


>gi|291065638|gb|ADD73908.1| dsRNA binding protein [Banna virus]
          Length = 207

 Score = 42.0 bits (98), Expect = 0.068,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            D  + +  +A ++      ++     GP HDPRF +  ++      Q  D SK+ A Q 
Sbjct: 1   MDPVSVVHNFARSQGLPL-NFETVGCEGPSHDPRFVIECKLLDFKH-QCTDSSKKRAIQK 58


>gi|31324225|gb|AAP47192.1| Mrpl15p [Eremothecium gossypii]
          Length = 165

 Score = 42.0 bits (98), Expect = 0.068,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 49/135 (36%), Gaps = 15/135 (11%)

Query: 21  SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
            +L + LTH S ++S +   E+L  LG ++L    S  L      A   +        V+
Sbjct: 9   DILLQCLTHKSFANSAKPYNEKLSLLGGQLLKWYAS-ALTVQQPGAAGVQQKPVNGLNVA 67

Query: 81  A------------ETCSQVARELDLASFIRVSSDLRKDVCSFM--TSIQADVVESLIAAL 126
                        +  S+  R  D+   I  +    +    F     ++  V+++LI + 
Sbjct: 68  NLGHEPYTLWTDSKVISEHMRTRDVDDLIFWNKRDSRATEKFNGLPKVRTTVLQALIGSS 127

Query: 127 YLDGGIEVAGTFVDK 141
               G E    FV +
Sbjct: 128 LTFNGEEKTAKFVLE 142


>gi|157137141|ref|XP_001663906.1| RNA binding protein, putative [Aedes aegypti]
 gi|108869786|gb|EAT34011.1| RNA binding protein, putative [Aedes aegypti]
          Length = 289

 Score = 42.0 bits (98), Expect = 0.069,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI-SGLAPAQGM 204
             + L E   ++ G+TP+Y +  R G  H+  F+  V    G A   G 
Sbjct: 62  PVSLLYELL-SRRGITPQYDLLPREGAAHEQTFSYRVSYPDGDAIGTGQ 109


>gi|226479846|emb|CAX73219.1| dihydrouridine synthase 2-like, SMM1 homolog [Schistosoma
           japonicum]
          Length = 511

 Score = 42.0 bits (98), Expect = 0.070,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 5/101 (4%)

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH 185
           +Y +G    +   V     +R           K  L E        +P+Y+         
Sbjct: 402 VYEEGIKNNSEEIVLSIPYERRFWPD-HGTSPKQILSEHCKLLKWDSPKYETVENR---E 457

Query: 186 DPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLKREGI 225
              F   V + G          +K+ AEQ AA   L+  G+
Sbjct: 458 KRSFFSAVLVDGRRYRNTSSCKTKKYAEQAAALVCLQVLGL 498


>gi|330842808|ref|XP_003293362.1| hypothetical protein DICPUDRAFT_83923 [Dictyostelium purpureum]
 gi|325076314|gb|EGC30110.1| hypothetical protein DICPUDRAFT_83923 [Dictyostelium purpureum]
          Length = 376

 Score = 42.0 bits (98), Expect = 0.070,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 60/158 (37%), Gaps = 16/158 (10%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           MS   +S+++         R +L+      S      + ++  EF GD  L   IST L 
Sbjct: 1   MSINFHSSIQSL-----KERGILKICFLPKS----QFDKFQVSEFHGDVTLSYQISTFLL 51

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N+        L+   +   S +  S   +  ++ +FI   S        + T  +ADV+E
Sbjct: 52  NYKPFFTPHLLTELRSLSSSNQILSDFFKLFEIQTFI---STEEVQ--EYSTKSRADVIE 106

Query: 121 SLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK 158
           ++I+   L    +     + K      +  G+   + K
Sbjct: 107 AMISE--LSQSSDPDAQLLLKSIIGFLIGWGERDFNLK 142


>gi|115530718|emb|CAL49304.1| novel protein similar to staufen [Xenopus (Silurana) tropicalis]
          Length = 351

 Score = 42.0 bits (98), Expect = 0.070,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  ++  ++VT  +GP H   F   V + G    +G   S
Sbjct: 313 KRNMSVNFEVTKETGPPHMKSFVTKVIV-GEFLGEGEGKS 351


>gi|198426942|ref|XP_002131661.1| PREDICTED: similar to Zfr protein [Ciona intestinalis]
          Length = 1004

 Score = 42.0 bits (98), Expect = 0.071,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 30/69 (43%), Gaps = 7/69 (10%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-----GLAPAQGMDCSKRAAEQV 214
            L ++   +   +P++K     GP+H   F   ++++      +  A     +K+ A  V
Sbjct: 364 RLNQFCQREH-TSPDFK-HETHGPEHARIFVCELKLNVSSVQKVLLASERGSNKKQATAV 421

Query: 215 AAAEVLKRE 223
            A  ++++ 
Sbjct: 422 CALSMIRQL 430


>gi|322504799|emb|CBZ14585.1| putative nuclease [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 936

 Score = 42.0 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 43/111 (38%), Gaps = 22/111 (19%)

Query: 30  SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS------AKEGELSVRFNSLVSAET 83
           SS     + +++RLE++GD   G  IS+ +   +         +    ++  ++      
Sbjct: 282 SSHYRRRRVAFDRLEYIGDNCWGTNISSRIMLLYPDQQWLYSERCSTFTLVRDACEMNVN 341

Query: 84  CSQVARELDLASFI------RVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
              V   L+L   +      R+ +            ++AD+VE +   L+L
Sbjct: 342 LDFVFDTLELWHLLSATAHSRLGNG----------KVKADLVEGIFGELHL 382


>gi|321457636|gb|EFX68719.1| hypothetical protein DAPPUDRAFT_114306 [Daphnia pulex]
          Length = 221

 Score = 41.6 bits (97), Expect = 0.074,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 72/211 (34%), Gaps = 51/211 (24%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR-VSS 101
           +EF+ D  +  + + +     DS     +     + V  +T   +A + +  ++I+ +S 
Sbjct: 19  MEFM-DY-MDRISAHVETIEKDSETTKPVQECATACVCNDTFGMLAAKRNFHAYIQNLSP 76

Query: 102 DLRKDVCSF----------------------------MTSIQADVVESLIAALYLDG--G 131
           +L K +  F                            + +  ADV E++  A+  D    
Sbjct: 77  NLVKHLEDFLEFAESENFAPFDRELAENEEIIATQVAIPTFLADVFEAVAGAVITDSNLS 136

Query: 132 IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG---PDHDPR 188
            E        +             +           +   TP   ++F+ G   PD  P 
Sbjct: 137 FETLEKVFVPFMNSVYDTPPISPFN-----------QLEKTPG--ISFQKGKARPDGRPT 183

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           F   V  +G+  A G+D +++ A+  A+   
Sbjct: 184 F--SVYQNGVLLATGIDENRKNAKFAASKYA 212


>gi|208690905|gb|ACI31228.1| eukaryotic translation initiation factor 2-alpha kinase 2
           [Hylobates alibarbis]
          Length = 551

 Score = 41.6 bits (97), Expect = 0.074,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 17/41 (41%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            K GV   Y+    SGP HD RFT  V I      +    S
Sbjct: 19  QKQGVVLRYQELPNSGPPHDRRFTFRVIIDEREFPEAEGRS 59



 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 1/59 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           L      K  +T  Y+     G      F    ++     +     +K+ A+Q+AA   
Sbjct: 104 LINRIAQKKRLTVNYEQCGW-GMHGTKGFHYKCKMGQKEYSIATGSTKQEAKQLAAKLA 161


>gi|255558801|ref|XP_002520424.1| ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223540409|gb|EEF41979.1| ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 1058

 Score = 41.6 bits (97), Expect = 0.075,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 45/141 (31%), Gaps = 31/141 (21%)

Query: 96   FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
             +    DL +        +    +E  +     D         +++  +++ L       
Sbjct: 893  LLLFGGDLSRGGLDGHLKMLGGYLEFFMKPALADT-YLSLKRELEELIQKKLL------- 944

Query: 156  DAKTELQ---EWA----------HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            D K ++Q   E              +    P YK         + +F   V  +GL    
Sbjct: 945  DPKLDIQSHNELLMAIRLLVSEDQCEGHGPPTYKTKQLK----NNQFRSTVIFNGLNF-- 998

Query: 203  GMD---CSKRAAEQVAAAEVL 220
             +     +K+ AE+ AAAE L
Sbjct: 999  -VGQPCNTKKLAEKDAAAEAL 1018


>gi|210623153|ref|ZP_03293608.1| hypothetical protein CLOHIR_01558 [Clostridium hiranonis DSM 13275]
 gi|210153797|gb|EEA84803.1| hypothetical protein CLOHIR_01558 [Clostridium hiranonis DSM 13275]
          Length = 131

 Score = 41.6 bits (97), Expect = 0.075,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 38/109 (34%), Gaps = 10/109 (9%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELD---LASFIRV 99
           L +LGD +    I   L     + K   L  +    V+A   S+V   ++       +R+
Sbjct: 14  LAYLGDTVYESYIREYLIKKNCNNKVNTLHKQAIKYVNANAQSKVIHTIENDLTEEEMRI 73

Query: 100 SSDLRKDVCSFMTSI-------QADVVESLIAALYLDGGIEVAGTFVDK 141
               R    +             A   E+LI  LYLD  I+     V +
Sbjct: 74  FKRGRNQKSNTAPKNMDIVDYKHATGFEALIGYLYLDKQIDRLEEIVRR 122


>gi|208690907|gb|ACI31229.1| eukaryotic translation initiation factor 2-alpha kinase 2
           [Symphalangus syndactylus]
          Length = 551

 Score = 41.6 bits (97), Expect = 0.076,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 17/41 (41%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            K GV   Y+    SGP HD RFT  V I      +    S
Sbjct: 19  QKQGVVLRYQELPNSGPPHDRRFTFRVIIDEREFPEAEGRS 59



 Score = 41.6 bits (97), Expect = 0.094,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 6/58 (10%)

Query: 164 WAHAKFGVTPEYKVTF--RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           +A  K   T  Y+       GP     F    ++     +     +K+ A+Q+AA   
Sbjct: 108 FAQKKRL-TVNYEQCGWGVHGP---KGFHYKCKMGQKEYSIATGSTKQEAKQLAAKLA 161


>gi|322490686|emb|CBZ25948.1| RNA editing complex protein MP61 [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 580

 Score = 41.6 bits (97), Expect = 0.076,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 53/117 (45%), Gaps = 14/117 (11%)

Query: 18  ANRSLLEKALTHS---SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA---KEGEL 71
            +R +L +A   S   S + +    +ERLEF+GD ++  ++++++   F       +G++
Sbjct: 231 KDRGILVEAFNVSDTLSTNSARSWEFERLEFVGDNVVKYVLNSIISCAFPPHEGGTKGKV 290

Query: 72  SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           +     +   +  ++    LDL                 ++  ++D+VE+L A L +
Sbjct: 291 TCFQFVMDGNDGLARGYDHLDLQQL--------ASSSRVVSKFKSDIVETLFAELQM 339


>gi|45593576|gb|AAS68265.1| VP12 [Coltivirus strain YN-6]
          Length = 207

 Score = 41.6 bits (97), Expect = 0.076,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            D  + +  +A ++      ++     GP HDPRF +  ++      Q  D SK+ A Q 
Sbjct: 1   MDPVSVVHNFARSQGLPL-NFETVGCEGPSHDPRFVIECKLLDFQH-QCTDSSKKRAIQK 58


>gi|297803978|ref|XP_002869873.1| hypothetical protein ARALYDRAFT_492708 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315709|gb|EFH46132.1| hypothetical protein ARALYDRAFT_492708 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 965

 Score = 41.6 bits (97), Expect = 0.077,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           RF+V   +S     +G+  S+R A   AA   ++  
Sbjct: 753 RFSVEAWLSNEKIGEGIGKSRREALHKAAEASIQNL 788



 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 11/68 (16%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPD------HDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           T L+E   ++      ++++F+S         H       VEI G    +G+  +   A 
Sbjct: 856 TALRELCASEG-----FEMSFQSQRPLPSDMVHRDELRAQVEIDGRVVGEGVGSTWDEAR 910

Query: 213 QVAAAEVL 220
             AA   L
Sbjct: 911 MQAAERAL 918


>gi|170285302|gb|AAI61331.1| Unknown (protein for IMAGE:7619279) [Xenopus (Silurana) tropicalis]
          Length = 145

 Score = 41.6 bits (97), Expect = 0.077,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
             + LQE+   + G TP Y +    G  H P FT  V +  +
Sbjct: 10  PISLLQEYG-TRVGKTPVYDLLKAEGQAHQPNFTFRVSVGDI 50


>gi|205318897|gb|ACI02440.1| VP12 [Banna virus]
          Length = 207

 Score = 41.6 bits (97), Expect = 0.078,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            D  + +  +A ++      ++     GP HDPRF +  ++      Q  D SK+ A Q 
Sbjct: 1   MDPVSVVHNFARSQGLPL-NFETVGCEGPSHDPRFVIECKLLDFQH-QCTDSSKKRAIQK 58


>gi|221039636|dbj|BAH11581.1| unnamed protein product [Homo sapiens]
          Length = 137

 Score = 41.6 bits (97), Expect = 0.080,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA--QGMDC 206
             + LQE+   + G TP Y +    G  H P FT  V +   +    +G+  
Sbjct: 31  PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCIGEEGLGS 81


>gi|3850263|gb|AAC72057.1| Vp12 [Banna virus]
 gi|45593574|gb|AAS68264.1| VP12 [Coltivirus strain BJ95-75]
          Length = 207

 Score = 41.6 bits (97), Expect = 0.080,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            D  + +  +A ++      ++     GP HDPRF +  ++      Q  D SK+ A Q 
Sbjct: 1   MDPVSVVHNFARSQGLPL-NFETVGCEGPSHDPRFVIECKLLDFQH-QCTDSSKKRAIQK 58


>gi|110738453|dbj|BAF01152.1| hypothetical protein [Arabidopsis thaliana]
          Length = 967

 Score = 41.6 bits (97), Expect = 0.081,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 6/58 (10%)

Query: 168 KFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           K G   EYK  +   +    D RF+V   +S     +G+  S+R A   AA   ++  
Sbjct: 737 KCGAKVEYKPSLVSST----DLRFSVEAWLSNQKIGEGIGKSRREALHKAAEASIQNL 790



 Score = 38.9 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 5/65 (7%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPD---HDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           T L+E   ++      ++ + R  P    H       VEI G    +G+  +   A   A
Sbjct: 858 TALRELCASEGLEM-AFQ-SQRQLPSDMVHRDELHAQVEIDGRVVGEGVGSTWDEARMQA 915

Query: 216 AAEVL 220
           A   L
Sbjct: 916 AERAL 920


>gi|62321227|dbj|BAD94401.1| putative protein [Arabidopsis thaliana]
          Length = 614

 Score = 41.6 bits (97), Expect = 0.081,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 6/58 (10%)

Query: 168 KFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           K G   EYK  +   +    D RF+V   +S     +G+  S+R A   AA   ++  
Sbjct: 384 KCGAKVEYKPSLVSST----DLRFSVEAWLSNQKIGEGIGKSRREALHKAAEASIQNL 437



 Score = 38.9 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 5/65 (7%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPD---HDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           T L+E   ++      ++ + R  P    H       VEI G    +G+  +   A   A
Sbjct: 505 TALRELCASEGLEM-AFQ-SQRQLPSDMVHRDELHAQVEIDGRVVGEGVGSTWDEARMQA 562

Query: 216 AAEVL 220
           A   L
Sbjct: 563 AERAL 567


>gi|79481163|ref|NP_193898.3| CPL1 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 1); double-stranded RNA
           binding / nucleotide phosphatase [Arabidopsis thaliana]
 gi|75111335|sp|Q5YDB6|CPL1_ARATH RecName: Full=RNA polymerase II C-terminal domain phosphatase-like
           1; Short=FCP-like 1; AltName: Full=Carboxyl-terminal
           phosphatase-like 1; Short=AtCPL1; Short=CTD
           phosphatase-like 1; AltName: Full=Protein FIERY 2;
           AltName: Full=Protein JASMONATE OVEREXPRESSING 1
 gi|49175305|gb|AAT52022.1| C-terminal domain phosphatase-like 1 [Arabidopsis thaliana]
 gi|332659088|gb|AEE84488.1| RNA polymerase II C-terminal domain phosphatase-like 1 [Arabidopsis
           thaliana]
          Length = 967

 Score = 41.6 bits (97), Expect = 0.081,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 6/58 (10%)

Query: 168 KFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           K G   EYK  +   +    D RF+V   +S     +G+  S+R A   AA   ++  
Sbjct: 737 KCGAKVEYKPSLVSST----DLRFSVEAWLSNQKIGEGIGKSRREALHKAAEASIQNL 790



 Score = 38.9 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 5/65 (7%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPD---HDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           T L+E   ++      ++ + R  P    H       VEI G    +G+  +   A   A
Sbjct: 858 TALRELCASEGLEM-AFQ-SQRQLPSDMVHRDELHAQVEIDGRVVGEGVGSTWDEARMQA 915

Query: 216 AAEVL 220
           A   L
Sbjct: 916 AERAL 920


>gi|4455275|emb|CAB36811.1| putative protein [Arabidopsis thaliana]
 gi|7268964|emb|CAB81274.1| putative protein [Arabidopsis thaliana]
          Length = 995

 Score = 41.6 bits (97), Expect = 0.081,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 6/58 (10%)

Query: 168 KFGVTPEYK--VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           K G   EYK  +   +    D RF+V   +S     +G+  S+R A   AA   ++  
Sbjct: 751 KCGAKVEYKPSLVSST----DLRFSVEAWLSNQKIGEGIGKSRREALHKAAEASIQNL 804



 Score = 38.9 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 5/65 (7%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPD---HDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           T L+E   ++      ++ + R  P    H       VEI G    +G+  +   A   A
Sbjct: 872 TALRELCASEGLEM-AFQ-SQRQLPSDMVHRDELHAQVEIDGRVVGEGVGSTWDEARMQA 929

Query: 216 AAEVL 220
           A   L
Sbjct: 930 AERAL 934


>gi|193690494|ref|XP_001952087.1| PREDICTED: tRNA-dihydrouridine synthase 2-like [Acyrthosiphon
           pisum]
          Length = 456

 Score = 41.6 bits (97), Expect = 0.083,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 22/65 (33%), Gaps = 6/65 (9%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-MDCSKRAAEQVA 215
            KT+L  WA       P+Y             F   V       +    + +KR AEQ +
Sbjct: 379 PKTKLLNWAKKHNKPLPKYHTEQFE-----KLFKSTVTFDNQKYSSSFWEKNKRWAEQGS 433

Query: 216 AAEVL 220
           A   L
Sbjct: 434 AIVCL 438


>gi|148703150|gb|EDL35097.1| testis nuclear RNA binding protein [Mus musculus]
          Length = 556

 Score = 41.6 bits (97), Expect = 0.083,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
            K  K+  +K  +   +  + L ++A  +  V  + K T  +G    P F     + G+ 
Sbjct: 122 KKLPKEFIMKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 180

Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223
              G+  +K+ +   AA   L   
Sbjct: 181 YKTGLGQNKKESRSNAAKLALDEL 204


>gi|123263539|emb|CAM28065.1| adenosine deaminase domain containing 1 (testis specific) [Mus
           musculus]
          Length = 218

 Score = 41.6 bits (97), Expect = 0.083,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
            K  K+  +K  +   +  + L ++A  +  V  + K T  +G    P F     + G+ 
Sbjct: 122 KKLPKEFIMKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 180

Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223
              G+  +K+ +   AA   L   
Sbjct: 181 YKTGLGQNKKESRSNAAKLALDEL 204


>gi|123263540|emb|CAM28066.1| adenosine deaminase domain containing 1 (testis specific) [Mus
           musculus]
          Length = 178

 Score = 41.6 bits (97), Expect = 0.083,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
            K  K+  +K  +   +  + L ++A  +  V  + K T  +G    P F     + G+ 
Sbjct: 82  KKLPKEFIMKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 140

Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223
              G+  +K+ +   AA   L   
Sbjct: 141 YKTGLGQNKKESRSNAAKLALDEL 164


>gi|115528969|gb|AAI07347.1| Adad1 protein [Mus musculus]
          Length = 222

 Score = 41.6 bits (97), Expect = 0.083,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
            K  K+  +K  +   +  + L ++A  +  V  + K T  +G    P F     + G+ 
Sbjct: 122 KKLPKEFIMKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 180

Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223
              G+  +K+ +   AA   L   
Sbjct: 181 YKTGLGQNKKESRSNAAKLALDEL 204


>gi|153945870|ref|NP_033376.2| adenosine deaminase domain-containing protein 1 [Mus musculus]
 gi|81871891|sp|Q5SUE7|ADAD1_MOUSE RecName: Full=Adenosine deaminase domain-containing protein 1;
           AltName: Full=Testis nuclear RNA-binding protein
 gi|56238160|emb|CAI26206.1| adenosine deaminase domain containing 1 (testis specific) [Mus
           musculus]
 gi|123272971|emb|CAM18412.1| adenosine deaminase domain containing 1 (testis specific) [Mus
           musculus]
 gi|183396967|gb|AAI65984.1| Adenosine deaminase domain containing 1 (testis specific)
           [synthetic construct]
          Length = 619

 Score = 41.6 bits (97), Expect = 0.083,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
            K  K+  +K  +   +  + L ++A  +  V  + K T  +G    P F     + G+ 
Sbjct: 122 KKLPKEFIMKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 180

Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223
              G+  +K+ +   AA   L   
Sbjct: 181 YKTGLGQNKKESRSNAAKLALDEL 204


>gi|673456|emb|CAA59168.1| testis nuclear RNA binding protein [Mus musculus]
          Length = 619

 Score = 41.6 bits (97), Expect = 0.083,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
            K  K+  +K  +   +  + L ++A  +  V  + K T  +G    P F     + G+ 
Sbjct: 122 KKLPKEFIMKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 180

Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223
              G+  +K+ +   AA   L   
Sbjct: 181 YKTGLGQNKKESRSNAAKLALDEL 204


>gi|195147336|ref|XP_002014636.1| GL19287 [Drosophila persimilis]
 gi|194106589|gb|EDW28632.1| GL19287 [Drosophila persimilis]
          Length = 314

 Score = 41.6 bits (97), Expect = 0.084,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 8/72 (11%)

Query: 155 RDAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
            D K+    LQE+        P+Y      G D    +   + +  +  + G   SKR +
Sbjct: 1   MDKKSAVSNLQEFCAKSKIPVPKYDYID--GEDGG--YICKIVLMDIE-SYGNGRSKRDS 55

Query: 212 EQVAAAEVLKRE 223
           + +AA+ ++K+ 
Sbjct: 56  KHLAASNIIKKL 67



 Score = 39.3 bits (91), Expect = 0.40,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAA 217
           EL+++        P  ++  + G    P F     ++ +        S  K+ A Q AA 
Sbjct: 102 ELRDYCVRHEMPLPLIEIVQQCGTPDAPEFLACCSVASIKR---YGKSDKKKDARQRAAI 158

Query: 218 EVL 220
           E+L
Sbjct: 159 EML 161


>gi|198473861|ref|XP_001356477.2| GA20129 [Drosophila pseudoobscura pseudoobscura]
 gi|198138140|gb|EAL33541.2| GA20129 [Drosophila pseudoobscura pseudoobscura]
          Length = 314

 Score = 41.6 bits (97), Expect = 0.084,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 8/72 (11%)

Query: 155 RDAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
            D K+    LQE+        P+Y      G D    +   + +  +  + G   SKR +
Sbjct: 1   MDKKSAVSNLQEFCAKSKIPVPKYDYID--GEDGG--YICKIVLMDIE-SYGNGRSKRDS 55

Query: 212 EQVAAAEVLKRE 223
           + +AA+ ++K+ 
Sbjct: 56  KHLAASNIMKKL 67



 Score = 39.3 bits (91), Expect = 0.40,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS--KRAAEQVAAA 217
           EL+++        P  ++  + G    P F     ++ +        S  K+ A Q AA 
Sbjct: 102 ELRDYCVRHEMPLPLIEIVQQCGTPDAPEFLACCSVASIKR---YGKSDKKKDARQRAAI 158

Query: 218 EVL 220
           E+L
Sbjct: 159 EML 161


>gi|205318893|gb|ACI02438.1| VP12 [Banna virus]
          Length = 207

 Score = 41.6 bits (97), Expect = 0.085,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            D  + +  +A ++      ++     GP HDPRF +  ++      Q  D SK+ A Q 
Sbjct: 1   MDPVSVVHNFARSQGLPL-NFETVGCEGPSHDPRFVIECKLLDFQH-QCTDSSKKRAIQK 58


>gi|302783689|ref|XP_002973617.1| hypothetical protein SELMODRAFT_173599 [Selaginella moellendorffii]
 gi|300158655|gb|EFJ25277.1| hypothetical protein SELMODRAFT_173599 [Selaginella moellendorffii]
          Length = 807

 Score = 41.6 bits (97), Expect = 0.087,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +F V V  +G   A+G+  + R A   A+ + L+
Sbjct: 617 QFCVEVTFNGEKIARGVGRTSRDARSRASEDALR 650


>gi|332246794|ref|XP_003272537.1| PREDICTED: adenosine deaminase domain-containing protein 2 isoform
           2 [Nomascus leucogenys]
          Length = 662

 Score = 41.6 bits (97), Expect = 0.088,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           V    GP     F+V VE+ G+    G   SK  A+Q AA   L
Sbjct: 204 VVEELGP--CFPFSVSVELDGVVCPAGTANSKTEAKQQAALSAL 245


>gi|114663872|ref|XP_001150748.1| PREDICTED: adenosine deaminase domain-containing protein 2 isoform
           1 [Pan troglodytes]
          Length = 665

 Score = 41.6 bits (97), Expect = 0.088,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           V    GP     F+V VE+ G+    G   SK  A+Q AA   L
Sbjct: 207 VVEELGP--CFPFSVSVELDGVVCPAGTANSKTEAKQQAALSAL 248


>gi|18027282|gb|AAL55730.1|AF281068_1 TAR RNA-binding protein TRBP1 [Homo sapiens]
          Length = 53

 Score = 41.6 bits (97), Expect = 0.090,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197
             + LQE+   + G TP Y +    G  H P FT  V +  
Sbjct: 10  PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVTVGD 49


>gi|18027283|gb|AAL55731.1|AF281068_2 TAR RNA-binding protein TRBP2 [Homo sapiens]
          Length = 74

 Score = 41.6 bits (97), Expect = 0.090,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197
             + LQE+   + G TP Y +    G  H P FT  V +  
Sbjct: 31  PISLLQEYG-TRIGKTPVYDLLKAEGQAHQPNFTFRVTVGD 70


>gi|281203094|gb|EFA77295.1| putative dTDP-D-glucose 4,6-dehydratase [Polysphondylium pallidum
           PN500]
          Length = 291

 Score = 41.6 bits (97), Expect = 0.091,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 61/176 (34%), Gaps = 24/176 (13%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
           + L  S++E    Y F   ++L+  L     +              D ++    ST + N
Sbjct: 59  NLLNLSSVEHD-NYRFCKGNILDSVLLDRLFTEESNI---------DTVIHFAASTHVDN 108

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            F    E  ++   N+++      + +R   +  FI +S+D    V      I       
Sbjct: 109 SF----ESSINFTENNILGTHYLLECSRRHRVQRFIYISTDEVGIVGE----IYN----- 155

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKV 177
            I   +    I+VA T +D  +      +      +K+ + E+   +      Y +
Sbjct: 156 -IGTDFEISNIQVAQTLIDILYPDDKNNNNGGDHVSKSNMLEYVQDRPFNDQRYHL 210


>gi|256080282|ref|XP_002576411.1| tRNA-dihydrouridine synthase [Schistosoma mansoni]
 gi|238661678|emb|CAZ32648.1| tRNA-dihydrouridine synthase, putative [Schistosoma mansoni]
          Length = 492

 Score = 41.6 bits (97), Expect = 0.091,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 26/71 (36%), Gaps = 6/71 (8%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR-FTVVVEISGLAPAQGMD-CSKRAAEQV 214
            K  L+E        +P+Y+       D D R F   V + G          SK+ AEQ 
Sbjct: 408 PKQILREHCKLLKWDSPKYETIE----DRDKRSFFSTVLVDGRRYRNTSACKSKKYAEQA 463

Query: 215 AAAEVLKREGI 225
           A    L   GI
Sbjct: 464 AVLVCLHVLGI 474


>gi|148679660|gb|EDL11607.1| mCG11408 [Mus musculus]
          Length = 243

 Score = 41.6 bits (97), Expect = 0.092,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             A  GV+  +     +GP     F+V  ++ GL    G   SK  A+Q AA   L+
Sbjct: 18  CMANLGVSLTFLEDQTAGPGSS--FSVCADLDGLVCPAGTGSSKLEAKQQAALSALQ 72


>gi|254675158|ref|NP_083704.1| adenosine deaminase domain-containing protein 2 [Mus musculus]
 gi|187952769|gb|AAI37981.1| Adad2 protein [Mus musculus]
          Length = 561

 Score = 41.6 bits (97), Expect = 0.092,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             A  GV+  +     +GP     F+V  ++ GL    G   SK  A+Q AA   L+
Sbjct: 101 CMANLGVSLTFLEDQTAGPGSS--FSVCADLDGLVCPAGTGSSKLEAKQQAALSALQ 155


>gi|81905359|sp|Q9D5P4|ADAD2_MOUSE RecName: Full=Adenosine deaminase domain-containing protein 2
 gi|12853260|dbj|BAB29697.1| unnamed protein product [Mus musculus]
          Length = 478

 Score = 41.6 bits (97), Expect = 0.092,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             A  GV+  +     +GP     F+V  ++ GL    G   SK  A+Q AA   L+
Sbjct: 18  CMANLGVSLTFLEDQTAGPGSS--FSVCADLDGLVCPAGTGSSKLEAKQQAALSALQ 72


>gi|169218462|gb|ACA50121.1| VP12 [Banna virus]
 gi|169218504|gb|ACA50142.1| VP12 [Banna virus]
          Length = 207

 Score = 41.6 bits (97), Expect = 0.093,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            D  + +  +A ++      ++     GP HDPRF +  ++      Q  D SK+ A Q 
Sbjct: 1   MDPVSVVHNFARSQGLPL-NFETVGCEGPSHDPRFVIECKLLDFQH-QCTDSSKKRAIQK 58


>gi|218461557|ref|ZP_03501648.1| ribonuclease III [Rhizobium etli Kim 5]
          Length = 45

 Score = 41.6 bits (97), Expect = 0.094,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 1  MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQES 39
          +SA   + LE  IGY F  ++ L++ALTH+S       +
Sbjct: 7  LSAADRAKLESLIGYDFVEKARLDRALTHASARTEKGGN 45


>gi|149411995|ref|XP_001513167.1| PREDICTED: similar to LRRG00118 [Ornithorhynchus anatinus]
          Length = 576

 Score = 41.2 bits (96), Expect = 0.097,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
            K  ++  +K  +   +  + L ++A  +  V  + K T  +G    P F     + G+ 
Sbjct: 80  KKIPREFIMKFKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVLGPYFAFCAVVDGIQ 138

Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223
              G+  +K+ A   AA   L   
Sbjct: 139 YKTGLGQNKKEARSNAAKLALDEL 162


>gi|170037638|ref|XP_001846663.1| ribonuclease iii [Culex quinquefasciatus]
 gi|167880947|gb|EDS44330.1| ribonuclease iii [Culex quinquefasciatus]
          Length = 166

 Score = 41.2 bits (96), Expect = 0.097,   Method: Composition-based stats.
 Identities = 21/160 (13%), Positives = 43/160 (26%), Gaps = 54/160 (33%)

Query: 63  FDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL 122
           F   +EG L+    ++V  +  + +A++L L  F+  + +                    
Sbjct: 3   FLDLEEGGLATYRAAIVQNQHLAVLAKKLYLEKFMLYAHES------------------- 43

Query: 123 IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSG 182
                     ++      ++                              P  KV   + 
Sbjct: 44  ----------DLCHELELRHALPDI-------------------------PICKVIECNS 68

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
           P     + +     G   A     S + AE  AA + L+ 
Sbjct: 69  PTSTRVYMMADYFRGKGLACSNGHSTQQAEMNAAKQALEN 108


>gi|195132199|ref|XP_002010531.1| GI14629 [Drosophila mojavensis]
 gi|193908981|gb|EDW07848.1| GI14629 [Drosophila mojavensis]
          Length = 458

 Score = 41.2 bits (96), Expect = 0.098,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 48/149 (32%), Gaps = 12/149 (8%)

Query: 81  AETCSQVARELDLASFIRVSSDLRKDVCSF-MTSIQADVVESLIAALYLDGGIEVAGTFV 139
            +T  Q+     L  + R      K+  +    ++   + E L     L+   +++  + 
Sbjct: 302 CQTLQQICEIWGLGDYCRRKQQELKEHGNGGRANVI--LTECLAKRQKLERSEDLSDEYE 359

Query: 140 DKYWKQRALKSGKFRRD---AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS 196
               +  A     +  D    K  L   A       P Y+         D  F  +    
Sbjct: 360 GVICRNMAFLRSTYPSDTQLPKMVLYVLAGKLGKQAPSYETHQC-----DKLFRSICSYD 414

Query: 197 GLAPAQG-MDCSKRAAEQVAAAEVLKREG 224
           G   +    + +K+ AEQ AA   L + G
Sbjct: 415 GQRFSSSFWEKNKKQAEQGAALVALLQLG 443


>gi|261326786|emb|CBH09759.1| conserved hypothetical protein [Trypanosoma brucei gambiense
           DAL972]
          Length = 946

 Score = 41.2 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 48/126 (38%), Gaps = 28/126 (22%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           +S    + LE+ +         L  A+T            E LE+LGD +L  +++    
Sbjct: 792 LSEADQAKLEQSL------MEQLLLAVT--------PVKNEALEYLGDAVLDFVVAQEKL 837

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N +              +V A   + +A+ L    F ++ +     +       QAD+VE
Sbjct: 838 NSWTGGP----------IVDATCNASLAKCL----FPQLRNYFEMKLGISNQKRQADMVE 883

Query: 121 SLIAAL 126
           ++  A+
Sbjct: 884 AIFGAV 889


>gi|260821131|ref|XP_002605887.1| hypothetical protein BRAFLDRAFT_124903 [Branchiostoma floridae]
 gi|229291223|gb|EEN61897.1| hypothetical protein BRAFLDRAFT_124903 [Branchiostoma floridae]
          Length = 667

 Score = 41.2 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 1/51 (1%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
             + L E+   K     E+     +GP H P+F     I G     G   +
Sbjct: 133 PVSALNEYCQLKRHKL-EFNEVAGTGPLHCPQFAYQATIDGRPFKPGQGRT 182


>gi|156063260|ref|XP_001597552.1| hypothetical protein SS1G_01746 [Sclerotinia sclerotiorum 1980]
 gi|154697082|gb|EDN96820.1| hypothetical protein SS1G_01746 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 259

 Score = 41.2 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 49/139 (35%), Gaps = 28/139 (20%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN-------HFDSAKEGE------- 70
            A+TH S     +   +RL + G RIL L  S +L               EG        
Sbjct: 112 LAVTHKSFDQGRRGFNDRLAYFGRRILSLQTSLVLLQSPIARRAQLPQDTEGMEPYSHPA 171

Query: 71  ------LSVRF-NSLVSAETCSQVARELDLASFI----RVSSDLRKDVCSFMTSIQADVV 119
                 L+      ++S E  +++   + +   I    R+  +L K        + A  +
Sbjct: 172 LDGLPNLTNVKVGDILSKERLARLGTRMGMQDIIRWEPRMKDNLEKSGIDL---VIATSL 228

Query: 120 ESLIAALYLDGGIEVAGTF 138
            ++I A+ L  G + A   
Sbjct: 229 YAIIGAVALQKGGDFATEV 247


>gi|238878349|gb|EEQ41987.1| hypothetical protein CAWG_00181 [Candida albicans WO-1]
          Length = 220

 Score = 41.2 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 61/155 (39%), Gaps = 17/155 (10%)

Query: 1   MSALRYSTLEKRIG--YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58
           ++    S ++  +G  Y   +  +  + +TH S  +  +   E+L  +G ++L L  +  
Sbjct: 53  LNETNISHIKSFLGDKYNIPD-EIALQVITHKSFGNGIKPYNEKLAAMGSKLLSLYFAKY 111

Query: 59  LFNHFDSAKEG----EL----SVRFNSLVSAETCSQVARELDLASFI----RVSSDLRKD 106
           + N       G     L    S     L S +T +  A+  ++   +    R S+   + 
Sbjct: 112 VTNQPCKHDNGVEGKNLDVLGSPMSRELPSLKTAAIFAKSNNINEIMFWHTRNSTLGFES 171

Query: 107 VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141
                 S   +++ SL+ A+    G + A  F+ +
Sbjct: 172 SGELKVS--GELLFSLVGAVNFYHGKDKAEQFITE 204


>gi|158340645|ref|YP_001521813.1| hypothetical protein AM1_D0002 [Acaryochloris marina MBIC11017]
 gi|158310886|gb|ABW32499.1| hypothetical protein AM1_D0002 [Acaryochloris marina MBIC11017]
          Length = 78

 Score = 41.2 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 8/62 (12%)

Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVAAAEVLK 221
                  TP Y +        D  F    E+          G+   K+ A+ +AA E+L+
Sbjct: 6   CQTLRWETPVYTMVSS-----DEWFICECELSVLGQQLEGSGVAKKKKLAKSIAAREILE 60

Query: 222 RE 223
           + 
Sbjct: 61  QL 62


>gi|183986711|ref|NP_001116945.1| adenosine deaminase domain containing 1 (testis-specific) [Xenopus
           (Silurana) tropicalis]
 gi|170284982|gb|AAI61180.1| adad1 protein [Xenopus (Silurana) tropicalis]
          Length = 584

 Score = 41.2 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
            K  K+  +K  +   +  + L ++A  +  +  + K T  +G      F     I G+ 
Sbjct: 80  RKVTKEFVVKYRRGDLNPVSALYQFAQMQ-RMEIDLKETVTTGNVFGAYFAFCAVIDGIE 138

Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223
              GM  +K+ A+  AA   L   
Sbjct: 139 YKTGMGQNKKEAKANAAQLALDEL 162


>gi|73979763|ref|XP_857218.1| PREDICTED: similar to spermatid perinuclear RNA-binding protein
           isoform 3 [Canis familiaris]
          Length = 151

 Score = 41.2 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           K  + E    + G+  +Y++    G  HD  F + VE+ G    +G   +
Sbjct: 49  KNPIMELNEKRRGL--KYELLSEPGGSHDKHFVMEVEVDGQK-FRGAGPN 95


>gi|242219204|ref|XP_002475384.1| predicted protein [Postia placenta Mad-698-R]
 gi|220725403|gb|EED79391.1| predicted protein [Postia placenta Mad-698-R]
          Length = 125

 Score = 41.2 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 7/64 (10%)

Query: 161 LQEWAHAKFGVTPEYKVTFRS---GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ-VAA 216
           L  W   +FG   +  +T      GP H   + V+V    +   +G   +K+ A +  AA
Sbjct: 53  LNNWVQGRFGRADD--LTSEELLTGPRHAATWVVIVYFRSIEYGRGT-STKKNAAKDQAA 109

Query: 217 AEVL 220
              L
Sbjct: 110 ERAL 113


>gi|72386585|ref|XP_843717.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|62175420|gb|AAX69562.1| hypothetical protein Tb927.3.1230 [Trypanosoma brucei]
 gi|70800249|gb|AAZ10158.1| hypothetical protein Tb927.3.1230 [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 948

 Score = 41.2 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 48/126 (38%), Gaps = 28/126 (22%)

Query: 1   MSALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           +S    + LE+ +         L  A+T            E LE+LGD +L  +++    
Sbjct: 794 LSEADQAKLEQSL------MEQLLLAVT--------PVKNEALEYLGDAVLDFVVAQEKL 839

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVE 120
           N +              +V A   + +A+ L    F ++ +     +       QAD+VE
Sbjct: 840 NSWTGGP----------IVDATCNASLAKCL----FPQLRNYFEMKLGISNQKRQADMVE 885

Query: 121 SLIAAL 126
           ++  A+
Sbjct: 886 AIFGAV 891


>gi|311223109|gb|ADP76633.1| nonstructural protein NSP3 [Human rotavirus C]
 gi|311223113|gb|ADP76635.1| nonstructural protein NSP3 [Human rotavirus C]
          Length = 402

 Score = 41.2 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 17/25 (68%)

Query: 201 AQGMDCSKRAAEQVAAAEVLKREGI 225
           A G   SK+ A+++AA ++L + GI
Sbjct: 378 ASGSGRSKKEAKRIAAYDILDQLGI 402


>gi|223712803|gb|ACN22083.1| VP12 [Banna virus]
          Length = 208

 Score = 41.2 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            D  + +  +A ++      +K     GP HDPRF +  ++      Q  D SK+ A Q 
Sbjct: 2   MDPVSVVHSFARSQGLPL-NFKTVGCEGPSHDPRFVIECKLLDFQH-QCTDSSKKRAIQK 59


>gi|257215814|emb|CAX83059.1| maleless [Schistosoma japonicum]
          Length = 237

 Score = 41.2 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 4/71 (5%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAA 216
           K+ L  +   K  + PEY    +       RF       G      G   +K+ A+  AA
Sbjct: 8   KSFLYTFLQTKKRIAPEYTFIEKPVGRGKVRFLCEARAEGFNYVGIGNSTTKKDAQTNAA 67

Query: 217 AEV---LKREG 224
            +    L REG
Sbjct: 68  RDFVNYLVREG 78


>gi|332982043|ref|YP_004463484.1| ribonuclease III [Mahella australiensis 50-1 BON]
 gi|332699721|gb|AEE96662.1| ribonuclease III [Mahella australiensis 50-1 BON]
          Length = 136

 Score = 41.2 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 48/116 (41%), Gaps = 11/116 (9%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELD--LA----SF 96
           L ++GD +  L + T +   +      EL+ +  +LV+A+  +++ + L+  L       
Sbjct: 21  LAYIGDAVYELFVRTYMVTRY-DISPHELNKKTVALVNAKAQAEMLKRLEGMLNEQEIDI 79

Query: 97  IRVSSDLRKDVCSFMTSI----QADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL 148
           +R   + +       TS      A   E+LI  LYL G  +     ++      ++
Sbjct: 80  VRRGRNTKSSNVPRHTSPIQYRYATGFEALIGYLYLKGEYDRLKYLLELCLSDDSI 135


>gi|169218484|gb|ACA50132.1| VP12 [Banna virus]
          Length = 208

 Score = 41.2 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            D  + +  +A ++      +K     GP HDPRF +  ++      Q  D SK+ A Q 
Sbjct: 2   MDPVSVVHSFARSQGLPL-NFKTVGCEGPSHDPRFVIECKLLDFQH-QCTDSSKKRAIQK 59


>gi|313225131|emb|CBY20924.1| unnamed protein product [Oikopleura dioica]
          Length = 2665

 Score = 41.2 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 4/44 (9%)

Query: 182 GPDHDPRFTVVVEISGLAP---AQGMDCSKRAAEQVAAAEVLKR 222
           GP H P FT    +        A+G   SK+ A+  AA   L++
Sbjct: 97  GPPHKPTFTFECSVKVKGSWYAAKGKSNSKQNAKHEAAK-ALRK 139


>gi|169350896|ref|ZP_02867834.1| hypothetical protein CLOSPI_01670 [Clostridium spiroforme DSM 1552]
 gi|169292482|gb|EDS74615.1| hypothetical protein CLOSPI_01670 [Clostridium spiroforme DSM 1552]
          Length = 125

 Score = 41.2 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 41/109 (37%), Gaps = 10/109 (9%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL---------DL 93
           L +LGD +L +++   L    +  K  +        VSA   ++   ++         ++
Sbjct: 11  LAYLGDSVLEVMVRDYLVKESELVKPNDFQKEAIKYVSASFHARFMHDMISEGFFTETEV 70

Query: 94  ASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
             + +   + +      +  + +   E++I  LYL    E      D+Y
Sbjct: 71  GIY-KRGRNTKGGKNESLEHMHSTGFEAIIGTLYLQKDYERLKIIFDRY 118


>gi|169218528|gb|ACA50154.1| VP12 [Banna virus]
          Length = 207

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            D  + +  +A ++      +K     GP HDPRF +  ++      Q  D SK+ A Q 
Sbjct: 1   MDPVSVVHSFARSQGLPL-NFKTVGCEGPSHDPRFVIECKLLDFQH-QCTDSSKKRAIQK 58


>gi|281201329|gb|EFA75541.1| hypothetical protein PPL_11046 [Polysphondylium pallidum PN500]
          Length = 1128

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 16/39 (41%)

Query: 182 GPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           GP H P F   + ++          SK+ A+   + + L
Sbjct: 704 GPQHQPEFICGLYLNNELKETCKGRSKKDAKDKVSRQAL 742


>gi|198429691|ref|XP_002127325.1| PREDICTED: similar to DiGeorge syndrome critical region gene 8
           [Ciona intestinalis]
          Length = 577

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 2/61 (3%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+A +     P Y   F +  D    F   + ++          +K++A+  AA   +
Sbjct: 299 LHEYAQSVLRTKPHY--IFATNEDASDPFQATIVLNEKNYGTASGINKKSAKNKAALLTM 356

Query: 221 K 221
           +
Sbjct: 357 E 357


>gi|169218438|gb|ACA50109.1| VP12 [Banna virus]
          Length = 206

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 167 AKFGVTP-EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           A+    P  +K     GP HDPRF +  ++      Q  D SK+ A Q 
Sbjct: 10  ARSQGLPLNFKTVGCEGPSHDPRFVIECKLLDFQH-QCTDSSKKRAIQK 57


>gi|312074021|ref|XP_003139783.1| hypothetical protein LOAG_04198 [Loa loa]
 gi|307765056|gb|EFO24290.1| hypothetical protein LOAG_04198 [Loa loa]
          Length = 184

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 2/72 (2%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQ 213
           +   + L E    K    P++     SGP ++ RF     ++G+         SK+  + 
Sbjct: 92  KHPVSVLMELCSKKRWHAPQFTCL-ESGPSNNRRFLWKAVVNGVEYQPSTPSTSKKTGKA 150

Query: 214 VAAAEVLKREGI 225
            A   VL+  G+
Sbjct: 151 QACQVVLQSLGL 162


>gi|261202336|ref|XP_002628382.1| RNase III domain-containing protein [Ajellomyces dermatitidis
           SLH14081]
 gi|239590479|gb|EEQ73060.1| RNase III domain-containing protein [Ajellomyces dermatitidis
           SLH14081]
 gi|239612205|gb|EEQ89192.1| RNase III domain-containing protein [Ajellomyces dermatitidis ER-3]
 gi|327353149|gb|EGE82006.1| RNase III domain-containing protein [Ajellomyces dermatitidis ATCC
           18188]
          Length = 266

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 48/151 (31%), Gaps = 22/151 (14%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL---------------- 71
           TH S     +   ERL +LG +I+ L  S  L      +   +L                
Sbjct: 114 THKSFDQGRRGFNERLSYLGKQIVHLQASLSLLESSSVSSPQKLEDPYGRTPFEHPSLQG 173

Query: 72  -----SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQADVVESLIAA 125
                    N  ++    + +A +  L   +R     R D   S +  +    + +++ A
Sbjct: 174 LDALTEDNKNMRINRTKLAALAEQYKLGEVLRWVPRYRNDLPGSGLEVVLTQAIYAVVGA 233

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKFRRD 156
           + L+ G  VA         +         RD
Sbjct: 234 VALEKGGAVANQVARDSILKPLGFDIGMPRD 264


>gi|242792823|ref|XP_002482035.1| RNase III domain protein [Talaromyces stipitatus ATCC 10500]
 gi|218718623|gb|EED18043.1| RNase III domain protein [Talaromyces stipitatus ATCC 10500]
          Length = 259

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 49/143 (34%), Gaps = 24/143 (16%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA--KEGELSVRFNSLVSAE 82
            A+TH S     +   +RL  LG RI+ L  S  L  + ++       LS      V   
Sbjct: 108 LAVTHKSFDQGRRGFNDRLALLGKRIVQLQASLNLVQNPENYKTNVPPLSRADKGKVFNH 167

Query: 83  ---------------------TCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQADVVE 120
                                  +++A + +L   +R +     D   S +  +    + 
Sbjct: 168 PALEGLENLTLDNRGWFTHKINLAKIAEKYELLKVLRWAPVKPDDLEGSGLNVVLTHTLY 227

Query: 121 SLIAALYLDGGIEVAGTFVDKYW 143
           +++ A+ L+ G   A  F  +  
Sbjct: 228 AIVGAIALERGGVEANEFARQRI 250


>gi|1770456|emb|CAA66917.1| M-phase phosphoprotein 4 [Homo sapiens]
          Length = 440

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 168 KFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197
           +     +YK+  ++GP H P FT+ VE+ G
Sbjct: 411 QLKPGLQYKLVSQTGPVHAPIFTMSVEVDG 440


>gi|268561546|ref|XP_002646471.1| Hypothetical protein CBG19440 [Caenorhabditis briggsae]
 gi|187024149|emb|CAP36691.1| CBR-ADR-1 protein [Caenorhabditis briggsae AF16]
          Length = 1012

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           P F     I       G   SK+ A+  AA   LKR+
Sbjct: 608 PVFYCDCVIDEER-FTGSGRSKKLAKNAAAVVALKRK 643


>gi|291065624|gb|ADD73901.1| dsRNA binding protein [Banna virus]
 gi|291065634|gb|ADD73906.1| dsRNA binding protein [Banna virus]
 gi|291065636|gb|ADD73907.1| dsRNA binding protein [Banna virus]
          Length = 208

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            D  + +  +A ++      +K     GP HDPRF +  ++      Q  D SK+ A Q 
Sbjct: 2   MDPVSVVHSFARSQGLPL-NFKTVGCEGPSHDPRFVIECKLLDFQH-QCTDSSKKRAIQK 59


>gi|3850251|gb|AAC72051.1| Vp12 [Banna virus]
          Length = 207

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 167 AKFGVTP-EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           A+    P +++     GP HDPRF +  +       Q  D SK+ A Q 
Sbjct: 11  ARSQGLPLDFETVGCEGPSHDPRFVIECKFLDFQH-QCTDSSKKRAIQK 58


>gi|313221521|emb|CBY32268.1| unnamed protein product [Oikopleura dioica]
          Length = 733

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E+ +      P Y+         D +   +++I G     G   ++  A+ +AA E
Sbjct: 466 TILHEYCNRALKAQPIYEDVRDDLISSDRQ-KYIIKIDGKEYGSGEGANRTIAKNIAALE 524

Query: 219 VLK 221
            LK
Sbjct: 525 TLK 527


>gi|156546224|ref|XP_001604820.1| PREDICTED: similar to conserved hypothetical protein [Nasonia
           vitripennis]
          Length = 1039

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 5/67 (7%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG--MDCSKRAAEQ 213
           D +  L  +  A+    P Y         +D      V + G   +       +K  AE+
Sbjct: 266 DPRLRLLSYTEARKLPHPVYIDVSVK---NDKNIYSAVMVCGKKHSSYPQEAKTKDEAEK 322

Query: 214 VAAAEVL 220
           +AA   L
Sbjct: 323 LAAKNAL 329


>gi|291065618|gb|ADD73898.1| dsRNA binding protein [Banna virus]
 gi|291065620|gb|ADD73899.1| dsRNA binding protein [Banna virus]
 gi|291065622|gb|ADD73900.1| dsRNA binding protein [Banna virus]
          Length = 208

 Score = 40.8 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            D  + +  +A ++      +K     GP HDPRF +  ++      Q  D SK+ A Q 
Sbjct: 2   MDPVSVVHSFARSQGLPL-NFKTVGCEGPSHDPRFVIECKLLDFQH-QCTDSSKKRAIQK 59


>gi|301776895|ref|XP_002923866.1| PREDICTED: adenosine deaminase domain-containing protein 1-like
           isoform 2 [Ailuropoda melanoleuca]
          Length = 566

 Score = 40.8 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
            K  K+  +K  +   +  + L ++A  +  V  + K T  +G    P F     + G+ 
Sbjct: 80  KKIPKEFIMKYKRGEINPVSALHQFAQMQ-RVHLDLKETVTTGNVMGPYFAFCAVVDGIQ 138

Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223
              G+  +K+ +   AA   L   
Sbjct: 139 YKTGLGQNKKESRSNAAKLALDEL 162


>gi|301776893|ref|XP_002923865.1| PREDICTED: adenosine deaminase domain-containing protein 1-like
           isoform 1 [Ailuropoda melanoleuca]
          Length = 577

 Score = 40.8 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
            K  K+  +K  +   +  + L ++A  +  V  + K T  +G    P F     + G+ 
Sbjct: 80  KKIPKEFIMKYKRGEINPVSALHQFAQMQ-RVHLDLKETVTTGNVMGPYFAFCAVVDGIQ 138

Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223
              G+  +K+ +   AA   L   
Sbjct: 139 YKTGLGQNKKESRSNAAKLALDEL 162


>gi|291065630|gb|ADD73904.1| dsRNA binding protein [Banna virus]
 gi|291065632|gb|ADD73905.1| dsRNA binding protein [Banna virus]
          Length = 208

 Score = 40.8 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 167 AKFGVTP-EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           A+    P  +K     GP HDPRF +  ++      Q  D SK+ A Q 
Sbjct: 12  ARSQGLPLNFKTVGCEGPSHDPRFVIECKLLDFQH-QCTDSSKKRAIQK 59


>gi|86562256|ref|NP_495890.2| RNA HelicAse family member (rha-1) [Caenorhabditis elegans]
 gi|3913436|sp|Q22307|DHX9_CAEEL RecName: Full=Probable ATP-dependent RNA helicase A; AltName:
           Full=Nuclear DNA helicase II; Short=NDH II
 gi|77799164|emb|CAA90409.2| C. elegans protein T07D4.3, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 1301

 Score = 40.8 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 27/76 (35%), Gaps = 5/76 (6%)

Query: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAA 211
             RD K  L  W        P Y     +      RF   + I+G    A G   +K+ A
Sbjct: 1   MSRDVKEFLYAWLGKNKYGNPTYDTKSET-RSGRQRFKCELRITGFGYTAFGNSTNKKDA 59

Query: 212 EQVAAAEV---LKREG 224
              AA +    L REG
Sbjct: 60  ATNAAQDFCQYLVREG 75



 Score = 39.7 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 13/85 (15%), Positives = 30/85 (35%), Gaps = 8/85 (9%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEY--KV----TFRSGPDHDPRFTVVVEISGL 198
           +  +  G    ++K  L E+          Y  K+    T ++       F     I+  
Sbjct: 160 KSEIHGGWTMENSKKALNEFLQKMRLPQVNYGTKIRESNTVKTMETTAQIFVPQ--INKN 217

Query: 199 APAQGMDCSKRAAEQVAAAEVLKRE 223
              +G   +K+ +E   A  ++++ 
Sbjct: 218 LVGKGTGSNKKVSEAACAMNIVRQM 242


>gi|325181112|emb|CCA15525.1| double stranded RNA binding putative [Albugo laibachii Nc14]
          Length = 320

 Score = 40.8 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 1/71 (1%)

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           +  F     ++L +    +  +   ++   +        +   V+ +G A A G   SKR
Sbjct: 113 TESFDVSYVSKLNDLIQ-RQKINICFQFETKEDERGQKWYHCRVDENGQALAHGKGISKR 171

Query: 210 AAEQVAAAEVL 220
            A+ +AA   L
Sbjct: 172 VAKALAAQSAL 182


>gi|50513704|pdb|1T4O|A Chain A, Crystal Structure Of Rnt1p Dsrbd
 gi|50513705|pdb|1T4O|B Chain B, Crystal Structure Of Rnt1p Dsrbd
          Length = 117

 Score = 40.8 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 5/76 (6%)

Query: 148 LKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGP-DHDPRFTVVVEI-SGLAPAQGMD 205
           +K+ K   +AK +L         +   Y    +  P   DP   V   +  G     G+ 
Sbjct: 1   MKTDKLDMNAKRQLYSLI-GYASLRLHYVTVKK--PTAVDPNSIVECRVGDGTVLGTGVG 57

Query: 206 CSKRAAEQVAAAEVLK 221
            + + A   AA   L+
Sbjct: 58  RNIKIAGIRAAENALR 73


>gi|302671186|ref|YP_003831146.1| ribonuclease III family protein [Butyrivibrio proteoclasticus B316]
 gi|302395659|gb|ADL34564.1| ribonuclease III family protein [Butyrivibrio proteoclasticus B316]
          Length = 145

 Score = 40.8 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 11/117 (9%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL------DLASF 96
           L ++GD    ++I ++L N  ++A    L  R +S+V A T + + + L      +   +
Sbjct: 28  LAYIGDAFFDMIIRSILVNKGNTA-VNNLHKRASSVVKAPTQAAMVKALMEDLTEEEQDY 86

Query: 97  IRVSSDLRKD----VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK 149
            R   + +        + M  + A   E+++  LYL GGI+ A   V+    +  L 
Sbjct: 87  YRRGRNSKPHTKAKNATTMDYLDATGFEAVMGFLYLTGGIDRACELVNLGINKLELD 143


>gi|291065614|gb|ADD73896.1| dsRNA binding protein [Banna virus]
          Length = 208

 Score = 40.8 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 167 AKFGVTP-EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           A+    P  +K     GP HDPRF +  ++      Q  D SK+ A Q 
Sbjct: 12  ARSQGLPLNFKTVGCEGPSHDPRFVIECKLLDFQH-QCTDSSKKRAIQK 59


>gi|159121927|gb|EDP47059.1| hypothetical protein AFUB_102760 [Aspergillus fumigatus A1163]
          Length = 603

 Score = 40.8 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 9/63 (14%)

Query: 1  MSALRYSTL-EKRIGYAFANRSLLEKALTHSSISHSYQES------YERLEFLGDRILGL 53
          M+  + +   + R+GY F N ++L  ALT  +      E         RL  LG+ ++  
Sbjct: 1  MATTKDARFVQDRLGYRFKNEAILRLALT--AAGKGGAEDGANKRGNSRLAHLGNFLMQF 58

Query: 54 LIS 56
          L++
Sbjct: 59 LLA 61


>gi|291065602|gb|ADD73890.1| dsRNA binding protein [Banna virus]
 gi|291065608|gb|ADD73893.1| dsRNA binding protein [Banna virus]
 gi|291065610|gb|ADD73894.1| dsRNA binding protein [Banna virus]
 gi|291065612|gb|ADD73895.1| dsRNA binding protein [Banna virus]
 gi|291065616|gb|ADD73897.1| dsRNA binding protein [Banna virus]
          Length = 208

 Score = 40.8 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 167 AKFGVTP-EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           A+    P  +K     GP HDPRF +  ++      Q  D SK+ A Q 
Sbjct: 12  ARSQGLPLNFKTVGCEGPSHDPRFVIECKLLDFQH-QCTDSSKKRAIQK 59


>gi|81022920|ref|YP_392486.1| nonstructural protein 3 [Rotavirus C]
 gi|81975426|sp|Q9PY95|NSP3_ROTHC RecName: Full=Non-structural protein 3; Short=NSP3; Contains:
           RecName: Full=p38; Contains: RecName: Full=p8
 gi|5734508|emb|CAB52751.1| nonstructural protein 3 [Human rotavirus (group C / strain
           Bristol)]
          Length = 402

 Score = 40.8 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 17/25 (68%)

Query: 201 AQGMDCSKRAAEQVAAAEVLKREGI 225
           A G   SK+ A+++AA ++L + GI
Sbjct: 378 AIGSGRSKKEAKRIAAYDILDQLGI 402


>gi|328769023|gb|EGF79068.1| hypothetical protein BATDEDRAFT_90050 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 665

 Score = 40.8 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 51/152 (33%), Gaps = 23/152 (15%)

Query: 96  FIRVSSDLRKDVCSFMTSI-QADVVESLIAALYLD----------GGIEVAGTFVD-KYW 143
           +I +          F  S+      E++I A   +           G E+AG  VD    
Sbjct: 205 YILMGPKPVYQEIEFKKSLKLKKPEEAVIEASREEVTWGFAEDAYDGDELAGQEVDMSAV 264

Query: 144 KQRALKSGKFRR-DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEIS-----G 197
            +  +    F   D +  L+ W  ++     EY+     G      +   +E+      G
Sbjct: 265 DRSTIDPNAFYYSDPRKALRVWFDSRGADL-EYQ-HEEEGHGVTRGYVARIELPVETGFG 322

Query: 198 LAPAQGMDCSKRAAEQVAAAEV---LKREGIW 226
                G    KR+AE  AA E    L + G+ 
Sbjct: 323 KLIGVGHGSKKRSAEHDAALEACFRLDKYGLL 354


>gi|188593362|emb|CAO78750.1| Oikopleura double-stranded RNA-binding protein dgcr8 [Oikopleura
           dioica]
          Length = 768

 Score = 40.8 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E+ +      P Y+         D +   +++I G     G   ++  A+ +AA E
Sbjct: 501 TILHEYCNRALKAQPIYEDVRDDLVSSDRQ-KYIIKIDGKEYGSGEGANRTIAKNIAALE 559

Query: 219 VLK 221
            LK
Sbjct: 560 TLK 562


>gi|118783761|ref|XP_001230901.1| AGAP004281-PA [Anopheles gambiae str. PEST]
 gi|116129024|gb|EAU76990.1| AGAP004281-PA [Anopheles gambiae str. PEST]
          Length = 344

 Score = 40.8 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 2/38 (5%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE-GI 225
           F   V + G     G   SK+ A ++AA+E  K   G+
Sbjct: 301 FVARVTV-GEQSFTGTGQSKKVARKMAASEACKALFGV 337


>gi|320527639|ref|ZP_08028813.1| RNase3 domain protein [Solobacterium moorei F0204]
 gi|320131960|gb|EFW24516.1| RNase3 domain protein [Solobacterium moorei F0204]
          Length = 124

 Score = 40.8 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 38  ESYER-LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASF 96
           E   R L FLGD +  L +   L       K   L     S VSA++ ++    L   SF
Sbjct: 5   ECNGRTLAFLGDAVWSLAVRDFLVQEG-QGKGKMLQKLSISYVSAKSQARFYSLLHEESF 63

Query: 97  IRVSSDLRKDVCSF------------MTSIQADVVESLIAALYLDGGIEVAGTFVDKY 142
                +                    +T   +   E+++ ALYL+   E      DK 
Sbjct: 64  FTEEEEATYRRGRNGNTGSVPNNTDVVTYRMSTGFEAILGALYLENNQERIRQIWDKV 121


>gi|20197904|gb|AAM15307.1| putative RNA helicase A [Arabidopsis thaliana]
          Length = 640

 Score = 40.8 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 10/76 (13%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD--- 205
           +SG    ++K++LQ          P YK         + +F   VE +       M    
Sbjct: 544 ESGPGGDNSKSQLQTILTRAGYTVPMYKTKQLK----NNKFQTTVEFNETQI---MGQPC 596

Query: 206 CSKRAAEQVAAAEVLK 221
            +K++AE+ AAAE ++
Sbjct: 597 SNKKSAEKDAAAEAIQ 612


>gi|111226989|ref|XP_001134628.1| hypothetical protein DDB_G0294407 [Dictyostelium discoideum AX4]
 gi|90971302|gb|EAS66962.1| hypothetical protein DDB_G0294407 [Dictyostelium discoideum AX4]
          Length = 837

 Score = 40.8 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 9/72 (12%)

Query: 158 KTELQEWAHAKF-GVTPEYKVTFRSGPDHDPRFTVVVEI-------SGLAPAQGMDCSKR 209
           K +LQ +   K  G  P Y  +   GPDH+  +   + +       +          +K+
Sbjct: 3   KNDLQTYIQQKRIGYLPVYH-SECRGPDHEREYRTHIRVGEINSKHNNKIVYSDWYKNKK 61

Query: 210 AAEQVAAAEVLK 221
            AE   A +VL 
Sbjct: 62  TAESCCAIKVLN 73


>gi|255954591|ref|XP_002568048.1| Pc21g10130 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589759|emb|CAP95910.1| Pc21g10130 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 208

 Score = 40.8 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 42/120 (35%), Gaps = 17/120 (14%)

Query: 29  HSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVA 88
           HSS +  +  +   L          L+S              L+ RF +           
Sbjct: 47  HSSFTQRHLINTSIL-----SQFRNLLSRTTEMEDLDIDSFVLTRRF-TPRKWTAL---- 96

Query: 89  RELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL 148
                   IR   +L     +  T + ADVVESLI A Y+DGGI  A   + +   +  L
Sbjct: 97  -------LIRNKLELSTAKRNISTKVLADVVESLIGAAYVDGGIREAQACLHRILPEINL 149


>gi|291301908|ref|YP_003513186.1| ribonuclease II [Stackebrandtia nassauensis DSM 44728]
 gi|290571128|gb|ADD44093.1| ribonuclease II [Stackebrandtia nassauensis DSM 44728]
          Length = 617

 Score = 40.8 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 10/85 (11%)

Query: 144 KQRALKSGKFRRDAKTELQEWAHAKFGVTP--EYKVTFRSGPDHDPRFTVVVEISGL--- 198
           +    +     R+    L E+A          +Y      GP H P FT  V  +G    
Sbjct: 523 RPSTREPVPADRNPVMALNEYAQTGVITELAWDY---DSDGPPHQPTFTCTVTATGDTGE 579

Query: 199 -APAQGMDCSKRAAEQVAAAEVLKR 222
              A G    K+AA+  AAA  L++
Sbjct: 580 PLSATGTGAGKQAAKTSAAAR-LRK 603


>gi|47202595|emb|CAF88058.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 254

 Score = 40.8 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206
           K  + E    + G+  +Y++   SG  +D RF + VE+      +G   
Sbjct: 15  KNPVMELNEKRRGL--KYELISESGSSYDKRFIIEVEVD-KQVFRGTGP 60


>gi|293355281|ref|XP_002728655.1| PREDICTED: adenosine deaminase domain containing 2 [Rattus
           norvegicus]
          Length = 528

 Score = 40.8 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           F+V  E+ GL    G   SK  A+Q AA   L+
Sbjct: 123 FSVCAELDGLVCPAGTGSSKLEAKQQAALSALQ 155


>gi|149038317|gb|EDL92677.1| rCG51254 [Rattus norvegicus]
          Length = 194

 Score = 40.8 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           F+V  E+ GL    G   SK  A+Q AA   L+
Sbjct: 123 FSVCAELDGLVCPAGTGSSKLEAKQQAALSALQ 155


>gi|293343395|ref|XP_002725441.1| PREDICTED: similar to testis nuclear RNA-binding protein [Rattus
           norvegicus]
          Length = 301

 Score = 40.8 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           F+V  E+ GL    G   SK  A+Q AA   L+
Sbjct: 123 FSVCAELDGLVCPAGTGSSKLEAKQQAALSALQ 155


>gi|79548544|ref|NP_178223.2| ATP binding / ATP-dependent helicase/ RNA binding / double-stranded
            RNA binding / helicase/ nucleic acid binding [Arabidopsis
            thaliana]
 gi|330250311|gb|AEC05405.1| DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana]
          Length = 1113

 Score = 40.8 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 10/76 (13%)

Query: 149  KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD--- 205
            +SG    ++K++LQ          P YK         + +F   VE +       M    
Sbjct: 1017 ESGPGGDNSKSQLQTILTRAGYTVPMYKTKQLK----NNKFQTTVEFNETQI---MGQPC 1069

Query: 206  CSKRAAEQVAAAEVLK 221
             +K++AE+ AAAE ++
Sbjct: 1070 SNKKSAEKDAAAEAIQ 1085


>gi|291065600|gb|ADD73889.1| dsRNA binding protein [Banna virus]
 gi|291065604|gb|ADD73891.1| dsRNA binding protein [Banna virus]
 gi|291065606|gb|ADD73892.1| dsRNA binding protein [Banna virus]
          Length = 208

 Score = 40.4 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            D  + +  +A ++      +K     GP HDPRF +  ++      Q  D SK+ A Q 
Sbjct: 2   MDPVSVVHSFARSQGLPL-NFKTVGCEGPSHDPRFVIECKLLDFQH-QCTDSSKKRAIQK 59


>gi|332244469|ref|XP_003271396.1| PREDICTED: adenosine deaminase domain-containing protein 1 isoform
           3 [Nomascus leucogenys]
          Length = 565

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
            K  K+  +K  +   +  + L ++A  +  V  + K T  +G    P F     + G+ 
Sbjct: 80  KKIPKEFIMKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 138

Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223
              G+  +K+ +   AA   L   
Sbjct: 139 YKTGLGQNKKESRSNAAKLALDEL 162


>gi|291401839|ref|XP_002717282.1| PREDICTED: adenosine deaminase domain containing 1
           (testis-specific) [Oryctolagus cuniculus]
          Length = 565

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
            K  K+  +K  +   +  + L ++A  +  V  + K T  +G    P F     + G+ 
Sbjct: 80  KKIPKEFIMKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 138

Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223
              G+  +K+ +   AA   L   
Sbjct: 139 YKTGLGQNKKESRSNAAKLALDEL 162


>gi|126330710|ref|XP_001370522.1| PREDICTED: similar to testis nuclear RNA binding protein
           [Monodelphis domestica]
          Length = 660

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
            K  K+  +K  +   +  + L ++A  +  V  + K T  +G    P F     + G+ 
Sbjct: 163 KKIPKEFIMKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 221

Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223
              G+  +K+ +   AA   L   
Sbjct: 222 YKTGLGQNKKESRSNAAKLALDEL 245


>gi|109075564|ref|XP_001103054.1| PREDICTED: adenosine deaminase domain-containing protein 1 isoform
           2 [Macaca mulatta]
          Length = 565

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
            K  K+  +K  +   +  + L ++A  +  V  + K T  +G    P F     + G+ 
Sbjct: 80  KKIPKEFIMKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 138

Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223
              G+  +K+ +   AA   L   
Sbjct: 139 YKTGLGQNKKESRSNAAKLALDEL 162


>gi|297484624|ref|XP_002694442.1| PREDICTED: adenosine deaminase domain containing 1
           (testis-specific) isoform 2 [Bos taurus]
 gi|296478716|gb|DAA20831.1| adenosine deaminase domain containing 1 (testis-specific) isoform 2
           [Bos taurus]
          Length = 566

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
            K  K+  +K  +   +  + L ++A  +  V  + K T  +G    P F     + G+ 
Sbjct: 80  KKIPKEFIMKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 138

Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223
              G+  +K+ +   AA   L   
Sbjct: 139 YKTGLGQNKKESRSNAAKLALDEL 162


>gi|297484622|ref|XP_002694441.1| PREDICTED: adenosine deaminase domain containing 1
           (testis-specific) isoform 1 [Bos taurus]
 gi|296478715|gb|DAA20830.1| adenosine deaminase domain containing 1 (testis-specific) isoform 1
           [Bos taurus]
          Length = 577

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
            K  K+  +K  +   +  + L ++A  +  V  + K T  +G    P F     + G+ 
Sbjct: 80  KKIPKEFIMKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 138

Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223
              G+  +K+ +   AA   L   
Sbjct: 139 YKTGLGQNKKESRSNAAKLALDEL 162


>gi|74354638|gb|AAI02559.1| Adenosine deaminase domain containing 1 (testis-specific) [Bos
           taurus]
          Length = 208

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
            K  K+  +K  +   +  + L ++A  +  V  + K T  +G    P F     + G+ 
Sbjct: 80  KKIPKEFIMKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 138

Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223
              G+  +K+ +   AA   L   
Sbjct: 139 YKTGLGQNKKESRSNAAKLALDEL 162


>gi|332244465|ref|XP_003271394.1| PREDICTED: adenosine deaminase domain-containing protein 1 isoform
           1 [Nomascus leucogenys]
          Length = 576

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
            K  K+  +K  +   +  + L ++A  +  V  + K T  +G    P F     + G+ 
Sbjct: 80  KKIPKEFIMKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 138

Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223
              G+  +K+ +   AA   L   
Sbjct: 139 YKTGLGQNKKESRSNAAKLALDEL 162


>gi|322801001|gb|EFZ21782.1| hypothetical protein SINV_04122 [Solenopsis invicta]
          Length = 184

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 181 SGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAE 218
           +GP H  RF   + I G      G   +K+ A+  AA +
Sbjct: 9   TGPKHRQRFLCELRIPGFDYVGAGNSTNKKDAQGNAAKD 47


>gi|332246796|ref|XP_003272538.1| PREDICTED: adenosine deaminase domain-containing protein 2 isoform
           3 [Nomascus leucogenys]
          Length = 671

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           F+V VE+ G+    G   SK  A+Q AA   L
Sbjct: 223 FSVSVELDGVVCPAGTANSKTEAKQQAALSAL 254


>gi|332246792|ref|XP_003272536.1| PREDICTED: adenosine deaminase domain-containing protein 2 isoform
           1 [Nomascus leucogenys]
          Length = 580

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           F+V VE+ G+    G   SK  A+Q AA   L
Sbjct: 142 FSVSVELDGVVCPAGTANSKTEAKQQAALSAL 173


>gi|332244467|ref|XP_003271395.1| PREDICTED: adenosine deaminase domain-containing protein 1 isoform
           2 [Nomascus leucogenys]
          Length = 558

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
            K  K+  +K  +   +  + L ++A  +  V  + K T  +G    P F     + G+ 
Sbjct: 62  KKIPKEFIMKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 120

Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223
              G+  +K+ +   AA   L   
Sbjct: 121 YKTGLGQNKKESRSNAAKLALDEL 144


>gi|114663874|ref|XP_001151022.1| PREDICTED: adenosine deaminase domain-containing protein 2 isoform
           2 [Pan troglodytes]
          Length = 583

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           F+V VE+ G+    G   SK  A+Q AA   L
Sbjct: 145 FSVSVELDGVVCPAGTANSKTEAKQQAALSAL 176


>gi|114663876|ref|XP_511140.2| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes]
          Length = 567

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           F+V VE+ G+    G   SK  A+Q AA   L
Sbjct: 145 FSVSVELDGVVCPAGTANSKTEAKQQAALSAL 176


>gi|222636484|gb|EEE66616.1| hypothetical protein OsJ_23196 [Oryza sativa Japonica Group]
 gi|305682532|dbj|BAJ16352.1| small RNA methyltransferase [Oryza sativa Japonica Group]
          Length = 938

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 188 RFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKREGI 225
            +   ++I GL     G    K+ AEQ AA   L + GI
Sbjct: 48  VYRCSLDIPGLTVVTPGTFVRKKDAEQAAAQIALDKLGI 86


>gi|218199137|gb|EEC81564.1| hypothetical protein OsI_25006 [Oryza sativa Indica Group]
          Length = 938

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 188 RFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKREGI 225
            +   ++I GL     G    K+ AEQ AA   L + GI
Sbjct: 48  VYRCSLDIPGLTVVTPGTFVRKKDAEQAAAQIALDKLGI 86


>gi|115470715|ref|NP_001058956.1| Os07g0164000 [Oryza sativa Japonica Group]
 gi|113610492|dbj|BAF20870.1| Os07g0164000 [Oryza sativa Japonica Group]
 gi|215767104|dbj|BAG99332.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 926

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 188 RFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKREGI 225
            +   ++I GL     G    K+ AEQ AA   L + GI
Sbjct: 62  VYRCSLDIPGLTVVTPGTFVRKKDAEQAAAQIALDKLGI 100


>gi|50510095|dbj|BAD30766.1| putative HEN1 [Oryza sativa Japonica Group]
          Length = 929

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 188 RFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKREGI 225
            +   ++I GL     G    K+ AEQ AA   L + GI
Sbjct: 48  VYRCSLDIPGLTVVTPGTFVRKKDAEQAAAQIALDKLGI 86


>gi|313232439|emb|CBY24107.1| unnamed protein product [Oikopleura dioica]
          Length = 564

 Score = 40.4 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           T L E+ +      P Y+         D +   +++I G     G   ++  A+ +AA E
Sbjct: 297 TILHEYCNRALKAQPIYEDVRDDLVSSDRQ-KYIIKIDGKEYGSGEGANRTIAKNIAALE 355

Query: 219 VLK 221
            LK
Sbjct: 356 TLK 358


>gi|46205475|ref|ZP_00209888.1| hypothetical protein Magn03001534 [Magnetospirillum
          magnetotacticum MS-1]
          Length = 52

 Score = 40.4 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/26 (53%), Positives = 17/26 (65%)

Query: 6  YSTLEKRIGYAFANRSLLEKALTHSS 31
             LE RIG+ FA+ +LL  ALTH S
Sbjct: 24 LEVLEARIGHVFADPTLLPLALTHVS 49


>gi|297817698|ref|XP_002876732.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297322570|gb|EFH52991.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1120

 Score = 40.4 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 10/76 (13%)

Query: 149  KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD--- 205
            +SG    ++K++LQ          P YK         + +F   VE +       M    
Sbjct: 1024 ESGPGGDNSKSQLQTILTRAGYAAPMYKTKQLK----NNKFQTTVEFNETQI---MGQPC 1076

Query: 206  CSKRAAEQVAAAEVLK 221
             +K+ AE+ AAAE ++
Sbjct: 1077 SNKKGAEKDAAAEAIQ 1092


>gi|225714066|gb|ACO12879.1| 39S ribosomal protein L44, mitochondrial precursor [Lepeophtheirus
           salmonis]
          Length = 328

 Score = 40.4 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 63/196 (32%), Gaps = 12/196 (6%)

Query: 34  HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL 93
              + SY RL  LG  ++   ++  L   F       +      L+S    +  A  + L
Sbjct: 115 KDSEASYTRLVELGREVISASLNDFLTKTFPKVPSDGIIAFQEYLMSPYVLASKALHIGL 174

Query: 94  ASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDG-----GIEVAGTFVDKYWKQRAL 148
              + VS +          +  ++   +LI A    G       ++    V        L
Sbjct: 175 KD-LVVSQEYPPS-----KNTLSNAFCALIGAHSESGNNRRQSYQLVVDLVATQIIGMDL 228

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH-DPRFTVVVEISGLAPAQGMDCS 207
                 ++    L +         PE ++ + SG +     + V +  +     +    S
Sbjct: 229 HDVWKIQNPMDYLSKILAENNMKEPEPRLQWASGKNTLLASYHVGIYSNQSLIGECTGES 288

Query: 208 KRAAEQVAAAEVLKRE 223
              A  +AA + L+R 
Sbjct: 289 IETARDMAALDTLRRM 304


>gi|23238116|ref|NP_694456.1| vp12 [Banna virus]
 gi|81981220|sp|Q9YIT9|NS5_BAVJK RecName: Full=Non-structural protein 5; Short=NS5
 gi|3850201|gb|AAC72011.1| vp12 [Banna virus strain JKT-6423]
 gi|3850219|gb|AAC72035.1| Vp12 [Banna virus]
          Length = 207

 Score = 40.4 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            D  + +  +A ++      ++     GP HDPRF +  +       Q  D SK+ A Q 
Sbjct: 1   MDPVSVVHSFARSQGLPL-NFETVGCEGPSHDPRFVIECKFLDFQH-QCTDSSKKRAIQK 58


>gi|311223107|gb|ADP76632.1| nonstructural protein NSP3 [Human rotavirus C]
          Length = 402

 Score = 40.4 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 17/25 (68%)

Query: 201 AQGMDCSKRAAEQVAAAEVLKREGI 225
           A G   SK+ A+++AA ++L + G+
Sbjct: 378 AIGSGKSKKEAKRIAAYDILDQLGV 402


>gi|295666818|ref|XP_002793959.1| RNase III domain-containing protein [Paracoccidioides brasiliensis
           Pb01]
 gi|226277612|gb|EEH33178.1| RNase III domain-containing protein [Paracoccidioides brasiliensis
           Pb01]
          Length = 199

 Score = 40.4 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 48/133 (36%), Gaps = 22/133 (16%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL---------------- 71
           TH S     +   ERL +LG +I+ L  S  L     ++   +L                
Sbjct: 51  THKSFDQGRRGFNERLSYLGKQIVQLQASLSLLESASTSSPKQLEDPYGRAPFDHPSLQG 110

Query: 72  -----SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQADVVESLIAA 125
                    N  ++    +Q+A +  L   +R     R D V S +  +    + +++ A
Sbjct: 111 LEVLTQDHKNMKLNRTKIAQLAHQYKLEEVLRWVPRYRNDLVESGLEVVLTQAIYAVVGA 170

Query: 126 LYLDGGIEVAGTF 138
           + L+ G  VA   
Sbjct: 171 VALEKGGAVANKV 183


>gi|114595925|ref|XP_001154908.1| PREDICTED: adenosine deaminase domain-containing protein 1 isoform
           1 [Pan troglodytes]
 gi|114595927|ref|XP_517424.2| PREDICTED: testis nuclear RNA-binding protein isoform 4 [Pan
           troglodytes]
          Length = 565

 Score = 40.4 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
            K  K+  +K  +   +  + L ++A  +  V  + K T  +G    P F     + G+ 
Sbjct: 80  KKIPKEFIMKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 138

Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223
              G+  +K+ +   AA   L   
Sbjct: 139 YKTGLGQNKKESRSNAAKLALDEL 162


>gi|226529650|ref|NP_001152757.1| adenosine deaminase domain-containing protein 1 isoform 2 [Homo
           sapiens]
 gi|25955608|gb|AAH40229.1| ADAD1 protein [Homo sapiens]
 gi|119625639|gb|EAX05234.1| testis nuclear RNA-binding protein, isoform CRA_d [Homo sapiens]
 gi|123993053|gb|ABM84128.1| testis nuclear RNA-binding protein [synthetic construct]
 gi|123993055|gb|ABM84129.1| testis nuclear RNA-binding protein [synthetic construct]
 gi|124000041|gb|ABM87529.1| testis nuclear RNA-binding protein [synthetic construct]
 gi|124000043|gb|ABM87530.1| testis nuclear RNA-binding protein [synthetic construct]
          Length = 565

 Score = 40.4 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
            K  K+  +K  +   +  + L ++A  +  V  + K T  +G    P F     + G+ 
Sbjct: 80  KKIPKEFIMKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 138

Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223
              G+  +K+ +   AA   L   
Sbjct: 139 YKTGLGQNKKESRSNAAKLALDEL 162


>gi|302896114|ref|XP_003046937.1| hypothetical protein NECHADRAFT_46356 [Nectria haematococca mpVI
           77-13-4]
 gi|256727865|gb|EEU41224.1| hypothetical protein NECHADRAFT_46356 [Nectria haematococca mpVI
           77-13-4]
          Length = 196

 Score = 40.4 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 45/148 (30%), Gaps = 21/148 (14%)

Query: 21  SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD----------SAKEGE 70
            L   A+TH S     +   +RL  LG   L +  +  +                    E
Sbjct: 46  ELKWLAVTHKSFDQGRRGFNDRLALLGRMTLIMETTKSIVAKDPIPGSIVPDEFERTPFE 105

Query: 71  LSVRFNS----------LVSAETCSQVARELDLASFIRVSSDL-RKDVCSFMTSIQADVV 119
                +           +   +    +A  + L   +R    L RK   S +  +    V
Sbjct: 106 HPQLQSLDNLTMEGPRDVAGKDKLYHLAAHVGLIDVVRWKPRLVRKLKASGLEVVLNGAV 165

Query: 120 ESLIAALYLDGGIEVAGTFVDKYWKQRA 147
            ++I A+ L  G  VA   V +    R 
Sbjct: 166 MAIIGAITLQHGAVVASQVVRERILARL 193


>gi|83771830|dbj|BAE61960.1| unnamed protein product [Aspergillus oryzae]
          Length = 129

 Score = 40.4 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 4/77 (5%)

Query: 5   RYSTLEKRIGYAFANRSLLEKAL-THSSIS---HSYQESYERLEFLGDRILGLLISTLLF 60
           R   +E+ I Y F N + + +AL T  S++       + ++ L  LGD  L L+++   +
Sbjct: 25  RIQLIEQIINYTFTNPATIHEALRTPGSMAILTPHRLDGHKDLAQLGDAALRLVLAKDGY 84

Query: 61  NHFDSAKEGELSVRFNS 77
               +   G L+   +S
Sbjct: 85  QAHATRARGPLARSSSS 101


>gi|109075566|ref|XP_001102972.1| PREDICTED: adenosine deaminase domain-containing protein 1 isoform
           1 [Macaca mulatta]
          Length = 558

 Score = 40.4 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
            K  K+  +K  +   +  + L ++A  +  V  + K T  +G    P F     + G+ 
Sbjct: 62  KKIPKEFIMKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 120

Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223
              G+  +K+ +   AA   L   
Sbjct: 121 YKTGLGQNKKESRSNAAKLALDEL 144


>gi|60476168|gb|AAX21225.1| nonstructural protein 3 [Human rotavirus C]
          Length = 402

 Score = 40.4 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 17/25 (68%)

Query: 201 AQGMDCSKRAAEQVAAAEVLKREGI 225
           A G   SK+ A+++AA ++L + GI
Sbjct: 378 AIGSGKSKKEAKRIAAYDILDQLGI 402


>gi|158339747|ref|YP_001520754.1| exoribonuclease II, putative [Acaryochloris marina MBIC11017]
 gi|158309988|gb|ABW31604.1| exoribonuclease II, putative [Acaryochloris marina MBIC11017]
          Length = 767

 Score = 40.4 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 8/62 (12%)

Query: 165 AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAAEQVAAAEVLK 221
                  TP Y +        D  F    E+          G+   K+ A+ +AA E+L+
Sbjct: 695 CQTLRWETPVYTMDSS-----DEWFICECELSVLGQQLEGSGVAKKKKLAKSIAAREILE 749

Query: 222 RE 223
           + 
Sbjct: 750 QL 751


>gi|297293318|ref|XP_001103214.2| PREDICTED: adenosine deaminase domain-containing protein 1 isoform
           4 [Macaca mulatta]
          Length = 613

 Score = 40.4 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
            K  K+  +K  +   +  + L ++A  +  V  + K T  +G    P F     + G+ 
Sbjct: 117 KKIPKEFIMKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 175

Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223
              G+  +K+ +   AA   L   
Sbjct: 176 YKTGLGQNKKESRSNAAKLALDEL 199


>gi|114595923|ref|XP_001155068.1| PREDICTED: adenosine deaminase domain-containing protein 1 isoform
           3 [Pan troglodytes]
          Length = 576

 Score = 40.4 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
            K  K+  +K  +   +  + L ++A  +  V  + K T  +G    P F     + G+ 
Sbjct: 80  KKIPKEFIMKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 138

Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223
              G+  +K+ +   AA   L   
Sbjct: 139 YKTGLGQNKKESRSNAAKLALDEL 162


>gi|21245124|ref|NP_640336.1| adenosine deaminase domain-containing protein 1 isoform 1 [Homo
           sapiens]
 gi|74732329|sp|Q96M93|ADAD1_HUMAN RecName: Full=Adenosine deaminase domain-containing protein 1;
           AltName: Full=Testis nuclear RNA-binding protein
 gi|16552939|dbj|BAB71416.1| unnamed protein product [Homo sapiens]
 gi|119625633|gb|EAX05228.1| testis nuclear RNA-binding protein, isoform CRA_a [Homo sapiens]
 gi|119625635|gb|EAX05230.1| testis nuclear RNA-binding protein, isoform CRA_a [Homo sapiens]
 gi|119625636|gb|EAX05231.1| testis nuclear RNA-binding protein, isoform CRA_a [Homo sapiens]
 gi|119625637|gb|EAX05232.1| testis nuclear RNA-binding protein, isoform CRA_a [Homo sapiens]
          Length = 576

 Score = 40.4 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
            K  K+  +K  +   +  + L ++A  +  V  + K T  +G    P F     + G+ 
Sbjct: 80  KKIPKEFIMKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 138

Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223
              G+  +K+ +   AA   L   
Sbjct: 139 YKTGLGQNKKESRSNAAKLALDEL 162


>gi|68490780|ref|XP_710785.1| likely mitochondrial ribosomal protein L15 [Candida albicans
           SC5314]
 gi|68490807|ref|XP_710772.1| likely mitochondrial ribosomal protein L15 [Candida albicans
           SC5314]
 gi|46432015|gb|EAK91524.1| likely mitochondrial ribosomal protein L15 [Candida albicans
           SC5314]
 gi|46432029|gb|EAK91537.1| likely mitochondrial ribosomal protein L15 [Candida albicans
           SC5314]
          Length = 220

 Score = 40.4 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 66/171 (38%), Gaps = 18/171 (10%)

Query: 1   MSALRYSTLEKRIG--YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58
           ++    S ++  +G  Y   +  +  + +TH S  +  +   E+L  +G ++L L  +  
Sbjct: 53  LNETNISHIKSFLGDKYNIPD-EIALQVITHKSFGNGIKPYNEKLAAMGSKLLSLYFAKY 111

Query: 59  LFNHFDSAKEG----EL----SVRFNSLVSAETCSQVARELDLASFI----RVSSDLRKD 106
           + N       G     L    S     L S +T +  A+  ++   +    R S+   + 
Sbjct: 112 VTNQPCKHDNGVEGKNLDVLGSPMSRELPSLKTAAIFAKSNNINEIMFWHTRNSTLGFES 171

Query: 107 VCSFMTSIQADVVESLIAALYLDGGIEVAGTFV-DKYWKQRALKSGKFRRD 156
                 S   +++ SL+ A+    G   A  F+ +K   Q    S +  R+
Sbjct: 172 SGELKVS--GELLFSLVGAVNFYHGKNKAEQFITEKLVDQFEKISAQNIRN 220


>gi|68489074|ref|XP_711650.1| likely mitochondrial ribosomal protein L15 [Candida albicans
           SC5314]
 gi|68489213|ref|XP_711581.1| likely mitochondrial ribosomal protein L15 [Candida albicans
           SC5314]
 gi|46432894|gb|EAK92357.1| likely mitochondrial ribosomal protein L15 [Candida albicans
           SC5314]
 gi|46432968|gb|EAK92428.1| likely mitochondrial ribosomal protein L15 [Candida albicans
           SC5314]
          Length = 220

 Score = 40.4 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 60/155 (38%), Gaps = 17/155 (10%)

Query: 1   MSALRYSTLEKRIG--YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58
           ++    S ++  +G  Y   +  +  + +TH S  +  +   E+L  +G ++L L  +  
Sbjct: 53  LNETNISHIKSFLGDKYNIPD-EIALQVITHKSFGNGIKPYNEKLAAMGSKLLSLYFAKY 111

Query: 59  LFNHFDSAKEG----EL----SVRFNSLVSAETCSQVARELDLASFI----RVSSDLRKD 106
           + N       G     L    S     L S +T +  A+  ++   +    R S+   + 
Sbjct: 112 VTNQPCKHDNGVEGKNLDVLGSPMSRELPSLKTAAIFAKSNNINEIMFWHTRNSTLGFES 171

Query: 107 VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141
                 S   +++ SL+ A+    G   A  F+ +
Sbjct: 172 SGELKVS--GELLFSLVGAVNFYHGKNKAEQFITE 204


>gi|327274104|ref|XP_003221818.1| PREDICTED: adenosine deaminase domain-containing protein 1-like
           [Anolis carolinensis]
          Length = 576

 Score = 40.4 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
            K  K+  +K  +   +  + L ++A  +  V  E K T  +G      F     + G+ 
Sbjct: 74  KKIPKEFIIKYKRGEINPVSALHQFAQMQ-RVQLELKETVATGNLMGAYFAFCAVVDGIT 132

Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223
              G+  +K+ ++  AA   L   
Sbjct: 133 YKTGLGQNKKESKSNAAKLALDEL 156


>gi|170085983|ref|XP_001874215.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164651767|gb|EDR16007.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 199

 Score = 40.4 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 166 HAKF-GVTPEYKVTFRSGPDHDPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLK 221
              F G  P Y+    SGP H+P +   +     +    G   +K+ A+  AA   ++
Sbjct: 13  QRHFRGAVPRYE-YQESGPQHEPYWQCSIYDSQDVLIGVGGGKNKKLAKDAAADSAIR 69


>gi|303282409|ref|XP_003060496.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457967|gb|EEH55265.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 661

 Score = 40.4 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 5/44 (11%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL-----KREGIW 226
           +F   V I G + A+    +K++A + A +  L     ++EG W
Sbjct: 529 QFVADVRIHGRSLARARGKTKKSAIRAATSRALDVVRAEKEGKW 572


>gi|21752129|dbj|BAC04125.1| unnamed protein product [Homo sapiens]
          Length = 558

 Score = 40.4 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
            K  K+  +K  +   +  + L ++A  +  V  + K T  +G    P F     + G+ 
Sbjct: 62  KKIPKEFIMKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 120

Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223
              G+  +K+ +   AA   L   
Sbjct: 121 YKTGLGQNKKESRSNAAKLALDEL 144


>gi|242073788|ref|XP_002446830.1| hypothetical protein SORBIDRAFT_06g023330 [Sorghum bicolor]
 gi|241938013|gb|EES11158.1| hypothetical protein SORBIDRAFT_06g023330 [Sorghum bicolor]
          Length = 879

 Score = 40.4 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 18/36 (50%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +F+  V I G    +G+  +++ A+  AA   L+  
Sbjct: 718 QFSTEVLIFGEKVGEGVGKTRKEAQWQAADTSLRNL 753


>gi|322824408|gb|EFZ29824.1| hypothetical protein TCSYLVIO_3904 [Trypanosoma cruzi]
          Length = 485

 Score = 40.4 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 11/95 (11%)

Query: 40  YERLEFLGDRILGLLISTLLFNHFDSAKEGELS------VRFNSLVSAETCSQVARELDL 93
           ++R+E +GD   G  +   L   F       L+           L S +    V   L L
Sbjct: 210 FQRMECIGDHNWGHSVCHRLVVLFPEVNWRTLTNTSVVDALRTVLESNQHLDYVFTALRL 269

Query: 94  ASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
              +R             T ++ADV+E++   L++
Sbjct: 270 DEILR-----NCGTQKISTKLKADVIEAIAGELHV 299


>gi|317495867|ref|ZP_07954230.1| RNase3 domain-containing protein [Gemella moribillum M424]
 gi|316914044|gb|EFV35527.1| RNase3 domain-containing protein [Gemella moribillum M424]
          Length = 143

 Score = 40.4 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 52/135 (38%), Gaps = 16/135 (11%)

Query: 27  LTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQ 86
            T  + S   Q     L ++GD I  ++    +  +    K  +L    ++LVSA   + 
Sbjct: 9   FTKKNFSSPEQMQALALAYIGDSIYDIMSREYVMKNHLG-KINDLHRTVSTLVSARAQAS 67

Query: 87  VAREL-------DLASFIRV-SSDLRKDVCSFMTSI----QADVVESLIAALYLDGGIEV 134
             + +       D+   I +   + + +  +   SI     A  +E++   LYL+   E 
Sbjct: 68  FMKHILENNILTDIEESIYIRGKNQKNNSKAKNASIMEYKLATGLEAVFGYLYLEKNFER 127

Query: 135 AG---TFVDKYWKQR 146
                 ++   ++++
Sbjct: 128 LEEMFNYIINLYEEK 142


>gi|226530771|ref|NP_001152767.1| adenosine deaminase domain-containing protein 1 isoform 3 [Homo
           sapiens]
 gi|119625634|gb|EAX05229.1| testis nuclear RNA-binding protein, isoform CRA_b [Homo sapiens]
          Length = 558

 Score = 40.4 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
            K  K+  +K  +   +  + L ++A  +  V  + K T  +G    P F     + G+ 
Sbjct: 62  KKIPKEFIMKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 120

Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223
              G+  +K+ +   AA   L   
Sbjct: 121 YKTGLGQNKKESRSNAAKLALDEL 144


>gi|114595929|ref|XP_001155017.1| PREDICTED: adenosine deaminase domain-containing protein 1 isoform
           2 [Pan troglodytes]
          Length = 558

 Score = 40.4 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
            K  K+  +K  +   +  + L ++A  +  V  + K T  +G    P F     + G+ 
Sbjct: 62  KKIPKEFIMKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 120

Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223
              G+  +K+ +   AA   L   
Sbjct: 121 YKTGLGQNKKESRSNAAKLALDEL 144


>gi|71415515|ref|XP_809822.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70874261|gb|EAN87971.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 485

 Score = 40.4 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 11/95 (11%)

Query: 40  YERLEFLGDRILGLLISTLLFNHFDSAKEGELS------VRFNSLVSAETCSQVARELDL 93
           ++R+E +GD   G  +   L   F       L+           L S +    V   L L
Sbjct: 210 FQRMECIGDHNWGHSVCHRLVVLFPEVNWRTLTNTSVVDALRTVLESNQHLDYVFTALRL 269

Query: 94  ASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
              +R             T ++ADV+E++   L++
Sbjct: 270 DEILR-----NCGTQKISTKLKADVIEAIAGELHV 299


>gi|71412938|ref|XP_808630.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70872876|gb|EAN86779.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 485

 Score = 40.4 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 11/95 (11%)

Query: 40  YERLEFLGDRILGLLISTLLFNHFDSAKEGELS------VRFNSLVSAETCSQVARELDL 93
           ++R+E +GD   G  +   L   F       L+           L S +    V   L L
Sbjct: 210 FQRMECIGDHNWGHSVCHRLVVLFPEVNWRTLTNTSVVDALRTVLESNQHLDYVFTALRL 269

Query: 94  ASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
              +R             T ++ADV+E++   L++
Sbjct: 270 DEILR-----NCGTQKISTKLKADVIEAIAGELHV 299


>gi|242792827|ref|XP_002482036.1| RNase III domain protein [Talaromyces stipitatus ATCC 10500]
 gi|218718624|gb|EED18044.1| RNase III domain protein [Talaromyces stipitatus ATCC 10500]
          Length = 200

 Score = 40.1 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 49/143 (34%), Gaps = 24/143 (16%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA--KEGELSVRFNSLVSAE 82
            A+TH S     +   +RL  LG RI+ L  S  L  + ++       LS      V   
Sbjct: 49  LAVTHKSFDQGRRGFNDRLALLGKRIVQLQASLNLVQNPENYKTNVPPLSRADKGKVFNH 108

Query: 83  ---------------------TCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQADVVE 120
                                  +++A + +L   +R +     D   S +  +    + 
Sbjct: 109 PALEGLENLTLDNRGWFTHKINLAKIAEKYELLKVLRWAPVKPDDLEGSGLNVVLTHTLY 168

Query: 121 SLIAALYLDGGIEVAGTFVDKYW 143
           +++ A+ L+ G   A  F  +  
Sbjct: 169 AIVGAIALERGGVEANEFARQRI 191


>gi|311223111|gb|ADP76634.1| nonstructural protein NSP3 [Human rotavirus C]
 gi|311223115|gb|ADP76636.1| nonstructural protein NSP3 [Human rotavirus C]
          Length = 402

 Score = 40.1 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 17/25 (68%)

Query: 201 AQGMDCSKRAAEQVAAAEVLKREGI 225
           A G   SK+ A+++AA ++L + GI
Sbjct: 378 ANGSGRSKKEAKRIAAYDILDQLGI 402


>gi|149699899|ref|XP_001499859.1| PREDICTED: adenosine deaminase domain containing 2 [Equus caballus]
          Length = 619

 Score = 40.1 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           F+V  E+ G+    G   SK  A+Q AA   L+
Sbjct: 181 FSVCAEVDGVVCPAGTANSKLEAKQQAARSALR 213


>gi|157134083|ref|XP_001663138.1| hypothetical protein AaeL_AAEL012964 [Aedes aegypti]
 gi|108870604|gb|EAT34829.1| conserved hypothetical protein [Aedes aegypti]
          Length = 360

 Score = 40.1 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F+V V + G     G   SK+ A + AA    ++ 
Sbjct: 313 REFSVGVTVDGQR-FIGKARSKKLARKEAAVAACRQL 348


>gi|159163044|pdb|1T4L|B Chain B, Solution Structure Of Double-Stranded Rna Binding Domain
           Of S. Cerevisiae Rnase Iii (Rnt1p) In Complex With The
           5' Terminal Rna Hairpin Of Snr47 Precursor
          Length = 90

 Score = 40.1 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 1/37 (2%)

Query: 186 DPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLK 221
           DP   V   +  G     G+  + + A   AA   L+
Sbjct: 34  DPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALR 70


>gi|26450779|dbj|BAC42498.1| putative ATP-dependent RNA helicase A [Arabidopsis thaliana]
          Length = 435

 Score = 40.1 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 10/76 (13%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD--- 205
           +SG    ++K++LQ          P YK         + +F   VE +       M    
Sbjct: 339 ESGPGGDNSKSQLQTILTRAGYTVPMYKTKQLK----NNKFQTTVEFNETQI---MGQPC 391

Query: 206 CSKRAAEQVAAAEVLK 221
            +K++AE+ AAAE ++
Sbjct: 392 SNKKSAEKDAAAEAIQ 407


>gi|328875686|gb|EGG24050.1| hypothetical protein DFA_06188 [Dictyostelium fasciculatum]
          Length = 636

 Score = 40.1 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 20/64 (31%), Gaps = 20/64 (31%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAA 216
           AK  LQE+        P Y  T   G DH  +F                     +E+ AA
Sbjct: 7   AKNNLQEYCQKNKIAMPIYNTT-TKGLDHVKQFM-------------------DSEKHAA 46

Query: 217 AEVL 220
              L
Sbjct: 47  TIAL 50


>gi|126179654|ref|YP_001047619.1| ribonuclease III [Methanoculleus marisnigri JR1]
 gi|125862448|gb|ABN57637.1| ribonuclease III [Methanoculleus marisnigri JR1]
          Length = 226

 Score = 40.1 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 54/158 (34%), Gaps = 31/158 (19%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSISH---------------SYQESYER---------- 42
            +E  +GY   +R     A+   S  +               +  ++  R          
Sbjct: 62  EVEADLGYPLGDREQFVIAMFRPSTRNLFDEIAEHAQSGCWCTLTDANLRELAGLHEVAG 121

Query: 43  -LEFLGDRILGLLISTLLFNHFDS-AKEGELSVRFNSLVSAETCSQVARELDLASF-IRV 99
            L ++GD  L + +   +++     AK G L+    +       +++     L    I  
Sbjct: 122 ALAWIGDAALKIGLLPAIWD--PDIAKAGVLTGNRKAYDRNSNLARLCDRWGLYEHRIHF 179

Query: 100 SSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGT 137
             D  +     +  ++  +VES+   L+L  G++   +
Sbjct: 180 DPDTPRST-RKVDHVKGTLVESVFGILFLREGLKGVAS 216


>gi|328712008|ref|XP_001944312.2| PREDICTED: dosage compensation regulator-like [Acyrthosiphon pisum]
          Length = 1430

 Score = 40.1 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 25/89 (28%)

Query: 156 DAKTELQEWAHAKFGVTPEYKV----------------------TFRSGPDHDPRFTVVV 193
           +AK+ L ++  +      +YK                       T ++G +  PRF   V
Sbjct: 166 NAKSHLNQFIQSNKLKNIDYKYSCNPKTFLHEWCEKNNLEPQFKTKQAGSNRKPRFICEV 225

Query: 194 EISGLAPAQGMDCS--KRAAEQVAAAEVL 220
            I+G     G+  S   + A++ A+ + L
Sbjct: 226 IITGHDY-IGIGNSANIKYAQENASKDFL 253



 Score = 38.9 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 7/75 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR-FTVVVEISGLAP-AQGMDCSKRAAEQ 213
           + K  L EW         +++ T ++G +  PR F   V ++G      G   +K+ A+ 
Sbjct: 3   NPKAYLHEWCAKNNLEL-QFE-TKQAGSNCKPRLFICEVTVTGHNYIGVGNSTNKKLAQA 60

Query: 214 VAAAE---VLKREGI 225
            A+ +    L +EG+
Sbjct: 61  NASKDYLLYLTKEGL 75


>gi|289740325|gb|ADD18910.1| mitochondrial 39S ribosomal protein L44 precursor [Glossina
           morsitans morsitans]
          Length = 325

 Score = 40.1 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 73/234 (31%), Gaps = 33/234 (14%)

Query: 11  KRIGYAFANRSLLEKALTHSSISHSYQ---------------ESYERLEFLGDRILGLLI 55
           KR+   F    LL+ AL   S     +               +    L   G R+    I
Sbjct: 72  KRLNEDFQ-IPLLQTALIQESYVAKEKLKQEELGVENVYIQLKHNAELAEHGQRLAKAYI 130

Query: 56  STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQ 115
              + +              + L++ +T S VA  L +   + + +D      +   S+ 
Sbjct: 131 EAFVAHSLPKMPAEGHKAVTSYLLTVDTLSHVALHLGMKE-LLMDADYPPSSEAMSRSLL 189

Query: 116 ADVVESLIAALYLDGGIEVAGTFVDKYW----KQRALKSGKFRRDAKTELQEWAHAKFGV 171
                ++I  L    G+E A +FV  +      Q+ L         +  L++        
Sbjct: 190 -----AVIGCLQQSSGLERAFSFVRDFICTQLNQKDLMEIWHIDKPEEVLRQICREGGLS 244

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEIS----GLAPAQGMDCSKRAAEQVAAAEVLK 221
            PE +     G      F     +          +G+      A Q+AA + L+
Sbjct: 245 EPEPRWIADCG---RIIFLAAYLVGRFSIKKLLGKGLGEDINPAIQLAARDALQ 295


>gi|205318895|gb|ACI02439.1| VP12 [Banna virus]
          Length = 207

 Score = 40.1 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
            D  + +  +A ++      ++     GP HDPRF +  ++      Q  D SK+ A
Sbjct: 1   MDPVSVVHNFARSQGLPL-NFETVGCEGPSHDPRFVIECKLLDFQH-QCTDSSKKRA 55


>gi|224113343|ref|XP_002316463.1| predicted protein [Populus trichocarpa]
 gi|222865503|gb|EEF02634.1| predicted protein [Populus trichocarpa]
          Length = 1077

 Score = 40.1 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 10/68 (14%)

Query: 156  DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVVEISGLAPAQGM-DCSKRAAE 212
            + K+ LQ          P+YK        H     F  +VE  G+    G    +K+ AE
Sbjct: 977  NPKSLLQTLLMRSGHSPPKYKTK------HLKTNEFRALVEFKGMQ-FVGKPKRNKQLAE 1029

Query: 213  QVAAAEVL 220
              AA E L
Sbjct: 1030 GDAAIEAL 1037


>gi|164606342|gb|ABY62316.1| Dicer-2-like protein [Bombyx mori]
          Length = 149

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 7   STLEKRIGYAFANRSLLEKALTHSSI 32
           + +EK + Y F + + L  AL+HSS 
Sbjct: 123 ADVEKILNYTFKDSTFLLNALSHSSY 148


>gi|328707654|ref|XP_001951982.2| PREDICTED: microprocessor complex subunit DGCR8-like [Acyrthosiphon
           pisum]
          Length = 477

 Score = 40.1 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 8/33 (24%), Positives = 15/33 (45%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +   V + G+    G   +K+ A+  AA   L+
Sbjct: 257 YLCTVVLDGIQYGIGTGSTKKQAKVDAARATLQ 289


>gi|296425163|ref|XP_002842112.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295638371|emb|CAZ86303.1| unnamed protein product [Tuber melanosporum]
          Length = 302

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 58/165 (35%), Gaps = 33/165 (20%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD-------------------- 64
           +A+TH S  H +Q   E+L   G R+  L  S  L N                       
Sbjct: 135 QAVTHKSFDHGHQPFNEKLAIYGKRVCWLHASLHLLNGPPIEDKRVYEPPNFVSSLDGTP 194

Query: 65  -SAKEGELSVRFNSLVSAE-----------TCSQVARELDLASFIRVSSDLRKDVCSFMT 112
               E  L   + SLVS +             + +AR + L + +R       ++     
Sbjct: 195 YRKPEPFLHRDYKSLVSIKDRNIRAILDPGKLATIARLVRLDNVMRWKPKDSDNLHESGQ 254

Query: 113 SIQAD-VVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD 156
           ++ A   + +++ AL L  G ++AG  V +          +  +D
Sbjct: 255 ALVATQALYAIVGALALQRGGDIAGGVVRERLLSSIDWVLEKTKD 299


>gi|153952841|ref|YP_001393606.1| hypothetical protein CKL_0202 [Clostridium kluyveri DSM 555]
 gi|219853506|ref|YP_002470628.1| hypothetical protein CKR_0163 [Clostridium kluyveri NBRC 12016]
 gi|146345722|gb|EDK32258.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
 gi|219567230|dbj|BAH05214.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 141

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 10/101 (9%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELD--LAS----F 96
           L F+GD +  +L+ T L N F S     L V+    V A + S++ + L+  L+     F
Sbjct: 23  LAFVGDAVYDVLVRTYLINKFQSISVHNLHVKAIKFVKAHSQSEIIKRLEKQLSEEELYF 82

Query: 97  IRVSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGIE 133
            +   + +         IQ    A   E+LI  LYL G ++
Sbjct: 83  FKRGRNAKSGTVPKNADIQEYRFATGFETLIGFLYLTGEVD 123


>gi|269792682|ref|YP_003317586.1| DEAD/DEAH box helicase domain-containing protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100317|gb|ACZ19304.1| DEAD/DEAH box helicase domain protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 994

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 7/85 (8%)

Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
           V ++     ++ G  ++D    L E+A  K  + P Y++        DP      E+  L
Sbjct: 364 VCRFLGIEMIEQGGVQQDYI-AL-EFAQGKRLLMPTYRIARLYRYAGDP---AEAELDSL 418

Query: 199 APAQGMDCSKRAAEQVAAAEVLKRE 223
              +    S + A++ A  E  +R 
Sbjct: 419 KRGR-WSRSYQEAKEKA-REAAERL 441


>gi|210161026|gb|ACJ09363.1| VP12 [Banna virus]
          Length = 208

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            D  + +  +A ++      +K     GP HDPRF +  +       Q  D SK+ A Q 
Sbjct: 2   MDPVSVVHSFARSQGLPL-NFKTVGCEGPSHDPRFIIECKFLDFQH-QCTDSSKKRAIQK 59


>gi|149698252|ref|XP_001503088.1| PREDICTED: similar to adenosine deaminase domain containing 1
           (testis specific) isoform 2 [Equus caballus]
          Length = 566

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
            K  K+  +K  +   +  + L ++A  +  V  + K T  +G    P F     + G+ 
Sbjct: 80  KKIPKEFIMKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 138

Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223
              G+  +K+ +   AA   L   
Sbjct: 139 YKTGLGLNKKESRSNAAKLALDEL 162


>gi|302322202|gb|ADL16945.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322208|gb|ADL16948.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
          Length = 172

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 19/43 (44%)

Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
          S  LF  +    EG+L+     +VS     Q A    L S+I+
Sbjct: 1  SRYLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 43


>gi|302322200|gb|ADL16944.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322210|gb|ADL16949.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322214|gb|ADL16951.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
          Length = 172

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 19/43 (44%)

Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
          S  LF  +    EG+L+     +VS     Q A    L S+I+
Sbjct: 1  SRYLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 43


>gi|302322070|gb|ADL16879.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322088|gb|ADL16888.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
          Length = 172

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 19/43 (44%)

Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
          S  LF  +    EG+L+     +VS     Q A    L S+I+
Sbjct: 1  SRYLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 43


>gi|302322012|gb|ADL16850.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322072|gb|ADL16880.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
          Length = 172

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 19/43 (44%)

Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
          S  LF  +    EG+L+     +VS     Q A    L S+I+
Sbjct: 1  SRYLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 43


>gi|302321846|gb|ADL16767.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321848|gb|ADL16768.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321850|gb|ADL16769.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321854|gb|ADL16771.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321858|gb|ADL16773.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321866|gb|ADL16777.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321878|gb|ADL16783.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321880|gb|ADL16784.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321882|gb|ADL16785.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321884|gb|ADL16786.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321886|gb|ADL16787.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321888|gb|ADL16788.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321890|gb|ADL16789.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321892|gb|ADL16790.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321894|gb|ADL16791.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321896|gb|ADL16792.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321898|gb|ADL16793.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321900|gb|ADL16794.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321902|gb|ADL16795.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321904|gb|ADL16796.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321906|gb|ADL16797.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321908|gb|ADL16798.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321910|gb|ADL16799.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321912|gb|ADL16800.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321914|gb|ADL16801.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321916|gb|ADL16802.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321918|gb|ADL16803.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321920|gb|ADL16804.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321922|gb|ADL16805.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321924|gb|ADL16806.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321930|gb|ADL16809.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321932|gb|ADL16810.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321934|gb|ADL16811.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321936|gb|ADL16812.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321938|gb|ADL16813.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321940|gb|ADL16814.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321942|gb|ADL16815.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321944|gb|ADL16816.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321946|gb|ADL16817.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321948|gb|ADL16818.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321950|gb|ADL16819.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321952|gb|ADL16820.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321954|gb|ADL16821.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321956|gb|ADL16822.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321958|gb|ADL16823.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321966|gb|ADL16827.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321968|gb|ADL16828.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321976|gb|ADL16832.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321978|gb|ADL16833.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321980|gb|ADL16834.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321982|gb|ADL16835.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321984|gb|ADL16836.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321986|gb|ADL16837.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321988|gb|ADL16838.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321990|gb|ADL16839.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321994|gb|ADL16841.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321996|gb|ADL16842.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321998|gb|ADL16843.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322000|gb|ADL16844.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322002|gb|ADL16845.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322004|gb|ADL16846.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322006|gb|ADL16847.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322008|gb|ADL16848.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322010|gb|ADL16849.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322014|gb|ADL16851.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322016|gb|ADL16852.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322018|gb|ADL16853.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322020|gb|ADL16854.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322022|gb|ADL16855.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322024|gb|ADL16856.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322026|gb|ADL16857.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322028|gb|ADL16858.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322030|gb|ADL16859.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322032|gb|ADL16860.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322034|gb|ADL16861.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322036|gb|ADL16862.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322038|gb|ADL16863.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322040|gb|ADL16864.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322042|gb|ADL16865.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322044|gb|ADL16866.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322046|gb|ADL16867.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322050|gb|ADL16869.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322060|gb|ADL16874.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322062|gb|ADL16875.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322064|gb|ADL16876.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322066|gb|ADL16877.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322068|gb|ADL16878.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322074|gb|ADL16881.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322076|gb|ADL16882.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322078|gb|ADL16883.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322080|gb|ADL16884.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322082|gb|ADL16885.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322084|gb|ADL16886.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322086|gb|ADL16887.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322090|gb|ADL16889.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322092|gb|ADL16890.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322104|gb|ADL16896.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322106|gb|ADL16897.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322108|gb|ADL16898.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322110|gb|ADL16899.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322112|gb|ADL16900.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322114|gb|ADL16901.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322116|gb|ADL16902.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322118|gb|ADL16903.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322120|gb|ADL16904.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322122|gb|ADL16905.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322124|gb|ADL16906.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322126|gb|ADL16907.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322128|gb|ADL16908.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322132|gb|ADL16910.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322134|gb|ADL16911.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322136|gb|ADL16912.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322138|gb|ADL16913.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322140|gb|ADL16914.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322142|gb|ADL16915.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322144|gb|ADL16916.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322146|gb|ADL16917.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322148|gb|ADL16918.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322152|gb|ADL16920.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322154|gb|ADL16921.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322156|gb|ADL16922.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322158|gb|ADL16923.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322160|gb|ADL16924.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322162|gb|ADL16925.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322164|gb|ADL16926.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322166|gb|ADL16927.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322168|gb|ADL16928.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322170|gb|ADL16929.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322178|gb|ADL16933.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322204|gb|ADL16946.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322206|gb|ADL16947.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322212|gb|ADL16950.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
          Length = 172

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 19/43 (44%)

Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
          S  LF  +    EG+L+     +VS     Q A    L S+I+
Sbjct: 1  SRYLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 43


>gi|210161028|gb|ACJ09364.1| VP12 [Banna virus]
 gi|210161030|gb|ACJ09365.1| VP12 [Banna virus]
          Length = 208

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
            D  + +  +A ++      +K     GP HDPRF +  +       Q  D SK+ A Q 
Sbjct: 2   MDPVSVVHSFARSQGLPL-NFKTVGCEGPSHDPRFIIECKFLDFQH-QCTDSSKKRAIQK 59


>gi|149698250|ref|XP_001503078.1| PREDICTED: similar to adenosine deaminase domain containing 1
           (testis specific) isoform 1 [Equus caballus]
          Length = 577

 Score = 40.1 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
            K  K+  +K  +   +  + L ++A  +  V  + K T  +G    P F     + G+ 
Sbjct: 80  KKIPKEFIMKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 138

Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223
              G+  +K+ +   AA   L   
Sbjct: 139 YKTGLGLNKKESRSNAAKLALDEL 162


>gi|302321926|gb|ADL16807.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321928|gb|ADL16808.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321960|gb|ADL16824.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321972|gb|ADL16830.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321974|gb|ADL16831.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322094|gb|ADL16891.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322098|gb|ADL16893.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322102|gb|ADL16895.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322150|gb|ADL16919.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322172|gb|ADL16930.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322174|gb|ADL16931.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322182|gb|ADL16935.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322184|gb|ADL16936.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322186|gb|ADL16937.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322190|gb|ADL16939.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322192|gb|ADL16940.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322194|gb|ADL16941.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322196|gb|ADL16942.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322198|gb|ADL16943.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
          Length = 172

 Score = 40.1 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 19/43 (44%)

Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
          S  LF  +    EG+L+     +VS     Q A    L S+I+
Sbjct: 1  SRYLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 43


>gi|321456671|gb|EFX67772.1| hypothetical protein DAPPUDRAFT_330706 [Daphnia pulex]
          Length = 153

 Score = 40.1 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 64/183 (34%), Gaps = 45/183 (24%)

Query: 46  LGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK 105
           +GDR+LG+ I+  +  +                V A++            +I +      
Sbjct: 1   MGDRVLGVKIANFVLRNCKD------------TVDAKS------------YIEIVESEDD 36

Query: 106 DVCSFMTSI-----QADVVESLIAALYLDGGIEVAGTFVDKYWK---QRALKSGKFRRDA 157
               F T +      ADV E+L   ++ D G      F+DK W+         GK     
Sbjct: 37  PKFRFATYVQPLKELADVWEALAGEIFEDSG-----DFIDKTWEVIAPLLAPVGKISYWP 91

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT-VVVEISGLAPAQGMDCSKRAAEQVAA 216
              +Q     K G + EY  T           T V +EI  +   +G++ + + A+  AA
Sbjct: 92  SNPVQNI-QRKCGKSVEYLETKI------KEMTCVTLEIYSVTIERGLEKNVKVAKSAAA 144

Query: 217 AEV 219
              
Sbjct: 145 KNA 147


>gi|298713070|emb|CBJ48845.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1117

 Score = 40.1 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 20/81 (24%), Gaps = 23/81 (28%)

Query: 163 EWAHAKFGVTPEYKVTFRSGPD----HDPRFTVVVEISGL----------------APAQ 202
           +       V   Y +     P      D    + V + G                    Q
Sbjct: 138 QCLQRHLKV--SYDIVEER-PATAMCPDKHVVMEVRLEGEWMEPSSDGGITRTIGLRRFQ 194

Query: 203 GMDCSKRAAEQVAAAEVLKRE 223
           G+  S R     AA   LK+ 
Sbjct: 195 GIGKSTREGRMNAAETALKKL 215


>gi|51247554|pdb|1T4N|A Chain A, Solution Structure Of Rnt1p Dsrbd
          Length = 94

 Score = 40.1 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 1/37 (2%)

Query: 186 DPRFTVVVEI-SGLAPAQGMDCSKRAAEQVAAAEVLK 221
           DP   V   +  G     G+  + + A   AA   L+
Sbjct: 35  DPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALR 71


>gi|302321852|gb|ADL16770.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321856|gb|ADL16772.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321860|gb|ADL16774.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321862|gb|ADL16775.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321864|gb|ADL16776.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321868|gb|ADL16778.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321870|gb|ADL16779.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321872|gb|ADL16780.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321874|gb|ADL16781.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321876|gb|ADL16782.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321962|gb|ADL16825.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321964|gb|ADL16826.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321970|gb|ADL16829.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302321992|gb|ADL16840.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322048|gb|ADL16868.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322052|gb|ADL16870.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322054|gb|ADL16871.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322056|gb|ADL16872.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322058|gb|ADL16873.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322096|gb|ADL16892.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322100|gb|ADL16894.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322130|gb|ADL16909.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322176|gb|ADL16932.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322180|gb|ADL16934.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
 gi|302322188|gb|ADL16938.1| At1g01040-like protein [Arabidopsis lyrata subsp. lyrata]
          Length = 172

 Score = 40.1 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 19/43 (44%)

Query: 56 STLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
          S  LF  +    EG+L+     +VS     Q A    L S+I+
Sbjct: 1  SRYLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 43


>gi|62244087|ref|NP_001006978.2| adenosine deaminase domain-containing protein 1 [Rattus norvegicus]
 gi|123780593|sp|Q3KR54|ADAD1_RAT RecName: Full=Adenosine deaminase domain-containing protein 1;
           AltName: Full=Testis nuclear RNA-binding protein
 gi|76780258|gb|AAI05907.1| Adenosine deaminase domain containing 1 (testis specific) [Rattus
           norvegicus]
          Length = 619

 Score = 40.1 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
            K  K+  +K  +   +  + L ++A  +  V  + K T  +G    P F     + G+ 
Sbjct: 122 KKIPKEFIMKYRRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 180

Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223
              G+  +K+ +   AA   L   
Sbjct: 181 YKTGLGQNKKESRSNAAKLALDEL 204


>gi|225557170|gb|EEH05457.1| RNase III domain-containing protein [Ajellomyces capsulatus G186AR]
          Length = 268

 Score = 39.7 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 47/133 (35%), Gaps = 22/133 (16%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLIST-----------------LLFNHFDSAKEGE 70
           TH S     +   ERL +LG +I+ L  S                       F+      
Sbjct: 116 THKSFDQGRRGFNERLSYLGKQIVQLQASLSLLESSSNASPEKLEDPYGRTAFEHPSLQG 175

Query: 71  LSVR----FNSLVSAETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQADVVESLIAA 125
           L +      N  V+    +++A++  L   +R     R D   S +  +    + +++ A
Sbjct: 176 LDILTEDNKNMRVNRTKLAELAQQYKLQEVLRWVPRYRNDLAASGLEVVLTQAIYAVVGA 235

Query: 126 LYLDGGIEVAGTF 138
           + L+ G  VA   
Sbjct: 236 VALEKGGAVANQV 248


>gi|261326075|emb|CBH08901.1| MP90 [Trypanosoma brucei gambiense DAL972]
          Length = 818

 Score = 39.7 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 46/121 (38%), Gaps = 15/121 (12%)

Query: 19  NRSLLEKAL-----THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA------K 67
           + SL  +A      T   + H  + ++ERLE++GD   G  +S  +   F          
Sbjct: 245 DISLAAQAPDLFDNTAQQVHHRRRVAFERLEYIGDNSWGNHLSNRMMLLFPDRQWTYSQN 304

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
               +   ++     T   +   L +   +      +         I+ADVVE++I  L+
Sbjct: 305 AYTFNCFRDACEMNVTLEFMFDTLRVGELLPPGVREKLGTG----KIKADVVEAVIGELH 360

Query: 128 L 128
           +
Sbjct: 361 V 361


>gi|29293894|gb|AAO72961.1| RNA editing complex protein MP90 [Trypanosoma brucei]
          Length = 818

 Score = 39.7 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 46/121 (38%), Gaps = 15/121 (12%)

Query: 19  NRSLLEKAL-----THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA------K 67
           + SL  +A      T   + H  + ++ERLE++GD   G  +S  +   F          
Sbjct: 245 DISLAAQAPDLFDNTAQQVHHRRRVAFERLEYIGDNSWGNHLSNRMMLLFPDRQWTYSQN 304

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
               +   ++     T   +   L +   +      +         I+ADVVE++I  L+
Sbjct: 305 AYTFNCFRDACEMNVTLEFMFDTLRVGELLPPGVREKLGTG----KIKADVVEAVIGELH 360

Query: 128 L 128
           +
Sbjct: 361 V 361


>gi|115504157|ref|XP_001218871.1| RNA-editing complex protein; nuclease; KREPB1 [Trypanosoma brucei
           TREU927]
 gi|83642353|emb|CAJ16173.1| RNA-editing complex protein; nuclease, putative; KREPB1
           [Trypanosoma brucei brucei strain 927/4 GUTat10.1]
          Length = 817

 Score = 39.7 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 46/121 (38%), Gaps = 15/121 (12%)

Query: 19  NRSLLEKAL-----THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA------K 67
           + SL  +A      T   + H  + ++ERLE++GD   G  +S  +   F          
Sbjct: 244 DISLAAQAPDLFDNTAQQVHHRRRVAFERLEYIGDNSWGNHLSNRMMLLFPDRQWTYSQN 303

Query: 68  EGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
               +   ++     T   +   L +   +      +         I+ADVVE++I  L+
Sbjct: 304 AYTFNCFRDACEMNVTLEFMFDTLRVGELLPPGVREKLGTG----KIKADVVEAVIGELH 359

Query: 128 L 128
           +
Sbjct: 360 V 360


>gi|308812800|ref|XP_003083707.1| unnamed protein product [Ostreococcus tauri]
 gi|116055588|emb|CAL58256.1| unnamed protein product [Ostreococcus tauri]
          Length = 164

 Score = 39.7 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 1/43 (2%)

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           V     P     F+V +E+       G   S + A++ AA   
Sbjct: 90  VIQEQDPA-KQTFSVRLELGSTTKGSGEAKSIKVAKRQAAKSA 131


>gi|296195646|ref|XP_002745514.1| PREDICTED: adenosine deaminase domain-containing protein 1-like
           [Callithrix jacchus]
          Length = 509

 Score = 39.7 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 1/84 (1%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA 199
            K  K+   K  +   +  + L ++A  +  V  + K T  +G    P F     + G+ 
Sbjct: 79  KKIPKEFITKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQ 137

Query: 200 PAQGMDCSKRAAEQVAAAEVLKRE 223
              G+  +K+ +   AA   L   
Sbjct: 138 YKTGLGQNKKESRSNAAKLALDEL 161


>gi|281210415|gb|EFA84581.1| hypothetical protein PPL_01571 [Polysphondylium pallidum PN500]
          Length = 198

 Score = 39.7 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 7/84 (8%)

Query: 15 YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK-EGELSV 73
          + F    ++  AL      +   + +E  E  GD+ILG  +  ++   +D     G  S 
Sbjct: 22 HKFIKDKIIVSAL------YPKSDDFENKECFGDKILGYRVVEMVTTEYDFVPKPGTTSR 75

Query: 74 RFNSLVSAETCSQVARELDLASFI 97
            +S V+ ET SQ+   L++  +I
Sbjct: 76 ILDSSVANETLSQLYSRLEIEPYI 99


>gi|147791245|emb|CAN67889.1| hypothetical protein VITISV_013607 [Vitis vinifera]
          Length = 558

 Score = 39.7 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 6/67 (8%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS-KRAAEQV 214
           +AK  LQ          P YK         +  F   V I       G  CS K+ AE+ 
Sbjct: 466 NAKGRLQTVLIRGGHQAPVYKTRQLK----NNMFRSTV-IFNELQFVGQPCSXKKLAEKD 520

Query: 215 AAAEVLK 221
           AAA+ L+
Sbjct: 521 AAAKALE 527


>gi|312283555|dbj|BAJ34643.1| unnamed protein product [Thellungiella halophila]
          Length = 502

 Score = 39.7 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 11/68 (16%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPD------HDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           T L+E   ++      +++ F+S         H       VEI G    +G+  +   A 
Sbjct: 395 TALRELCASEG-----FEMAFQSQRPLPSDMVHRDELHAQVEIDGRVLGEGVGSTWDEAR 449

Query: 213 QVAAAEVL 220
             AA   L
Sbjct: 450 MQAAERAL 457



 Score = 39.7 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           RF+V   +SG    +G+  S+R A   AA   ++  
Sbjct: 291 RFSVETWLSGEKIGEGIGKSRREALHKAAEVSIQNL 326


>gi|321259085|ref|XP_003194263.1| hypothetical protein CGB_E3090W [Cryptococcus gattii WM276]
 gi|317460734|gb|ADV22476.1| Hypothetical protein CGB_E3090W [Cryptococcus gattii WM276]
          Length = 271

 Score = 39.7 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 52/171 (30%), Gaps = 36/171 (21%)

Query: 19  NRSLLEKALTHSSISHSYQ--------------------ESYERLEFLGDRILGLLISTL 58
           N +L  + LTH S   ++                         RL FLG R L   ++  
Sbjct: 80  NPALALQILTHKSYRFAHPVRHSPSLSEAQSPIAQESSAPHNARLAFLGRRALSTYLALF 139

Query: 59  LFNHFDS-----------AKEGELSVRFNSLVSAETCS-QVARELDLASFIRVSSDLRKD 106
           +   + S            +  EL  R  +L         V  E  +   +R   +    
Sbjct: 140 VHEAYGSSGALREQGSDFLRGKELEERLTALRHVNNLGRMVGGEWRVEDVLRWDRNQTAQ 199

Query: 107 VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
             S   S++   VE+++  ++   G   A      +   + +      RD 
Sbjct: 200 -ASGNLSVKGQTVEAILGGVFTQFGSPAAHRAFHLHVLPKFVSQ---LRDP 246


>gi|138854|sp|P27586|NSP3_ROTPC RecName: Full=Non-structural protein 3; Short=NSP3; Contains:
           RecName: Full=p38; Contains: RecName: Full=p8
 gi|333308|gb|AAA47087.1| NS34 protein [Porcine rotavirus C]
          Length = 402

 Score = 39.7 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 197 GLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           G A A     SK+ A+++AA ++L + G+
Sbjct: 374 GSAEAVAKGRSKKEAKRIAAKDILDQIGL 402


>gi|242045250|ref|XP_002460496.1| hypothetical protein SORBIDRAFT_02g029450 [Sorghum bicolor]
 gi|241923873|gb|EER97017.1| hypothetical protein SORBIDRAFT_02g029450 [Sorghum bicolor]
          Length = 123

 Score = 39.7 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 18/49 (36%), Gaps = 7/49 (14%)

Query: 181 SGPDHDPRFTVVVEISGLAPAQGMDCS----KRAAEQVAAAEVLKREGI 225
            GPDH PRF   V  +          S     R AE  AA   L R  +
Sbjct: 15  EGPDHTPRFRAAVTFNSETF---EGPSGCTTLRQAEHAAAEVTLARLSL 60


>gi|58268124|ref|XP_571218.1| hypothetical protein CNE02300 [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|134111961|ref|XP_775516.1| hypothetical protein CNBE2300 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50258175|gb|EAL20869.1| hypothetical protein CNBE2300 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57227452|gb|AAW43911.1| hypothetical protein CNE02300 [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 287

 Score = 39.7 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 52/170 (30%), Gaps = 36/170 (21%)

Query: 20  RSLLEKALTHSSISHSYQ--------------------ESYERLEFLGDRILGLLISTLL 59
            +L  + LTH S   ++                         RL FLG R L   ++  +
Sbjct: 97  PALALQILTHKSYRFAHPVRHSPSLSDAQSSIGPESSAPHNARLAFLGRRALSTYLALFV 156

Query: 60  FNHFDS-----------AKEGELSVRFNSLVSAETCS-QVARELDLASFIRVSSDLRKDV 107
              + S            +  EL  R  +L         V  E  +   +R   + +   
Sbjct: 157 HEAYGSSGALREQGSDFLRGKELEERLTALRHVNNLGRMVGGEWRVEDVLRWDRN-QTSQ 215

Query: 108 CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
            S   S++   VE+++  ++   G   A      +   + +      RD 
Sbjct: 216 ASGNLSVKGQTVEAILGGVFTQFGSPAAHRAFHLHVLPKFVSQ---LRDP 262


>gi|240277717|gb|EER41225.1| RNase III domain-containing protein [Ajellomyces capsulatus H143]
          Length = 330

 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 47/133 (35%), Gaps = 22/133 (16%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLIST-----------------LLFNHFDSAKEGE 70
           TH S     +   ERL +LG +I+ L  S                       F+      
Sbjct: 178 THKSFDQGRRGFNERLSYLGKQIVQLQASLSLLESSSSASPEKLEDPYGRTAFEHPSLQG 237

Query: 71  LSVR----FNSLVSAETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQADVVESLIAA 125
           L +      N  V+    +++A++  L   +R     R D   S +  +    + +++ A
Sbjct: 238 LDILTEDNKNMRVNRTKLAELAQQYKLQEVLRWVPRYRNDLAASGLEVVLTQAIYAVVGA 297

Query: 126 LYLDGGIEVAGTF 138
           + L+ G  VA   
Sbjct: 298 VALEKGGAVANQV 310


>gi|221122562|ref|XP_002164293.1| PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box polypeptide 9
           [Hydra magnipapillata]
          Length = 1280

 Score = 39.7 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 7/73 (9%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI-----SGLAPAQGMDCSKRA 210
           +AKT+L ++ +      P   + +  GPDH   F   +             +    SK+ 
Sbjct: 144 NAKTKLHQFLNENK--IPADFIYYSEGPDHQRLFRAELSFWLKEADRKIIGKEAAHSKKL 201

Query: 211 AEQVAAAEVLKRE 223
           A Q  +  ++++ 
Sbjct: 202 AAQYCSRSLVRQL 214



 Score = 38.1 bits (88), Expect = 0.88,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 5/59 (8%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAAAEVLK 221
           W   +  + P +       PD   RF    +I G+   A G   SK+  E  AA ++L 
Sbjct: 12  WVGKQMKLIPHFYAV----PDGPHRFNYQAKIDGINYIAFGGGPSKKEGEAAAARDLLN 66


>gi|332029375|gb|EGI69330.1| Double-stranded RNA-specific editase 1 [Acromyrmex echinatior]
          Length = 356

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 1/45 (2%)

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              GP  +  + V  E+ G     G   SK  A Q AA   LK  
Sbjct: 125 ETQGPMPNSLYLVHAELDGKTY-VGQGLSKPLARQNAAENALKAL 168


>gi|328785857|ref|XP_395948.4| PREDICTED: hypothetical protein LOC412491 [Apis mellifera]
          Length = 521

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 1/45 (2%)

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              GP  +  + V  E+ G     G   SK  A Q AA   LK  
Sbjct: 282 ETQGPMPNSLYLVHAELDGKTY-VGQGLSKPLARQNAAENALKAL 325


>gi|221108219|ref|XP_002168585.1| PREDICTED: hypothetical protein [Hydra magnipapillata]
          Length = 180

 Score = 39.7 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 9/85 (10%)

Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS--GPDHDPRFTVVVEIS 196
           +   +   + K    R D  + LQ     +    PEYK    S  G      F     + 
Sbjct: 25  IKAAYPLASEKMLAERVDYTSLLQIVCQKEKWNLPEYKECTSSLGG------FGYQCRVG 78

Query: 197 GLAP-AQGMDCSKRAAEQVAAAEVL 220
                ++  + +K+ A++ AA   L
Sbjct: 79  LKWYESKEFNSTKKDAKRNAAKWAL 103


>gi|291519017|emb|CBK74238.1| Uncharacterized protein conserved in bacteria [Butyrivibrio
           fibrisolvens 16/4]
          Length = 146

 Score = 39.7 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 11/108 (10%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL---------DL 93
           L ++GD I  ++I ++L N  ++A   +L  R +S+V A T + +A  L         D 
Sbjct: 28  LAYIGDAIFDVVIRSILVNKGNTA-VNKLHQRASSVVKAHTQAAMATALMDSFTDEEADW 86

Query: 94  ASFIRVSSDLRKDVCSF-MTSIQADVVESLIAALYLDGGIEVAGTFVD 140
               R S    K   +  M  ++A   E+++  LYL G ++     ++
Sbjct: 87  YRRGRNSKPHTKAKNATTMDYLEATGFEAVMGYLYLTGNMDRICELIN 134


>gi|255085362|ref|XP_002505112.1| predicted protein [Micromonas sp. RCC299]
 gi|226520381|gb|ACO66370.1| predicted protein [Micromonas sp. RCC299]
          Length = 514

 Score = 39.7 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 6/43 (13%)

Query: 190 TVVVEIS-GLAPAQGMDCSKRAAEQVAAAEVLK-----REGIW 226
           T    +  G    +G   +K+ A   AA + L+     ++G W
Sbjct: 415 TATCILDDGETIGRGRGVNKKRAIMEAARDALRHLRATKDGEW 457


>gi|150863903|ref|XP_001382538.2| hypothetical protein PICST_55080 [Scheffersomyces stipitis CBS
           6054]
 gi|149385159|gb|ABN64509.2| predicted protein [Scheffersomyces stipitis CBS 6054]
          Length = 286

 Score = 39.7 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 54/140 (38%), Gaps = 15/140 (10%)

Query: 18  ANRSLLEKALTHSSISHS-------------YQESYERLEFLGDRILGLLISTLLFNHFD 64
           +N +LL + +T  S                  +   E+L  LG  +L LL+  +L   F 
Sbjct: 148 SNDALLLRVMTDKSYHQPSDILESETRTHDINRTHNEKLSILGRSLLELLLYQILDERFP 207

Query: 65  SAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIA 124
           +    E+ V  + L+S    +++A   +L    + +     D    M  I   +  S +A
Sbjct: 208 NMYGEEMFVFRHKLLSPGILTKLAFGYNLVDPYKYNLSSEIDSNRKME-IFGKIFLSYVA 266

Query: 125 ALYLDG-GIEVAGTFVDKYW 143
            L +DG        ++ K +
Sbjct: 267 GLSMDGYTQSEIKLWIRKLY 286


>gi|115883113|ref|XP_001197513.1| PREDICTED: similar to NREBP, partial [Strongylocentrotus
           purpuratus]
 gi|115970343|ref|XP_001193598.1| PREDICTED: similar to NREBP, partial [Strongylocentrotus
           purpuratus]
          Length = 62

 Score = 39.3 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 8/45 (17%), Positives = 16/45 (35%)

Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
           + ++     +     L E  + +    P ++V    GP H   F 
Sbjct: 16  KVIRKDLSGKHPVMALNELCNKRRWGKPNFEVVREDGPPHKKNFV 60


>gi|313226997|emb|CBY22143.1| unnamed protein product [Oikopleura dioica]
          Length = 551

 Score = 39.3 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            F V +E +     +G+  +K+ AE  AA  +LK
Sbjct: 44  EFKVTLE-NNGEIFEGIGSNKKKAEHRAAFNLLK 76


>gi|147832855|emb|CAN72816.1| hypothetical protein VITISV_004100 [Vitis vinifera]
          Length = 894

 Score = 39.3 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 8/29 (27%), Positives = 12/29 (41%)

Query: 192 VVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            V   G    +G   ++R A+  AA   L
Sbjct: 683 EVWNQGEKIGEGTGKTRREAQCQAAEASL 711



 Score = 37.0 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 13/30 (43%)

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             VEI G    +G   +   A+  AA + L
Sbjct: 812 AQVEIDGQVLGKGTGSTWDDAKMQAAEKAL 841


>gi|70727477|ref|YP_254393.1| hypothetical protein SH2478 [Staphylococcus haemolyticus JCSC1435]
 gi|68448203|dbj|BAE05787.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 131

 Score = 39.3 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 13/114 (11%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL-DLA------- 94
           L ++GD +L   +   +      +K   L     S VSA++ +Q    L ++        
Sbjct: 14  LAYMGDAVLDQHVREYIVLKL-QSKPNRLHQVSKSYVSAKSQAQTLETLFEMGWFTDEEL 72

Query: 95  SFIRVSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGIEVAGTFVDKYWK 144
             ++   + +    +  T IQ    +  +E++I  LYLD   E     +D   +
Sbjct: 73  DIVKRGRNAKSHTKAKNTDIQTYRKSSGLEAVIGYLYLDHQEERLENLLDMIVQ 126


>gi|290976137|ref|XP_002670797.1| predicted protein [Naegleria gruberi]
 gi|284084360|gb|EFC38053.1| predicted protein [Naegleria gruberi]
          Length = 656

 Score = 39.3 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 12/23 (52%), Positives = 16/23 (69%)

Query: 7   STLEKRIGYAFANRSLLEKALTH 29
            ++E  IGY F+N+S L  ALTH
Sbjct: 336 ESVEDIIGYTFSNKSYLMIALTH 358


>gi|126304916|ref|XP_001374839.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 507

 Score = 39.3 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 16/35 (45%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             F+V   +  ++  +G   SK+ A+  AA   L 
Sbjct: 117 RHFSVCAMLDEMSCPEGTGSSKKEAKGQAAILALN 151


>gi|157876665|ref|XP_001686677.1| RNA editing complex protein MP61 [Leishmania major]
 gi|38073409|gb|AAR10826.1| MP61 [Leishmania major]
 gi|68129752|emb|CAJ09058.1| RNA editing complex protein MP61 [Leishmania major strain Friedlin]
          Length = 587

 Score = 39.3 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 51/117 (43%), Gaps = 14/117 (11%)

Query: 18  ANRSLLEKALTHS---SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA---KEGEL 71
            +R +L +    S   S + +    +ERLEF+GD ++  +++ ++   F       +G++
Sbjct: 238 KDRGILVETFNVSDNQSTNSARSWEFERLEFVGDNVVKYVLNNIISCAFPPHEGGTKGKM 297

Query: 72  SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           +     +   +  ++    LDL                 ++  ++D+VE+L A L +
Sbjct: 298 TCFQFVMDGNDGLARGYDHLDLQQL--------ASSPRVVSKFKSDIVETLFAELQM 346


>gi|71030286|ref|XP_764785.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68351741|gb|EAN32502.1| hypothetical protein TP02_0219 [Theileria parva]
          Length = 836

 Score = 39.3 bits (91), Expect = 0.40,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 9/87 (10%)

Query: 16  AFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF----DSAKEGEL 71
            F N  LL   L  SS +     S ++LE + D +   + ++ LF H+    +S    E 
Sbjct: 96  PFLNLELLNMILV-SSYTLGIPLSSQQLETILDSVHQHISTSNLFKHYNSDKNSDSPNET 154

Query: 72  SVRF---NSLVSA-ETCSQVARELDLA 94
           S       ++VS   + + +AR   L 
Sbjct: 155 SPVRIGIEAIVSILHSLATLARRFPLH 181


>gi|300857266|ref|YP_003782250.1| hypothetical protein CLJU_c41260 [Clostridium ljungdahlii DSM
           13528]
 gi|300437381|gb|ADK17148.1| conserved hypothetical protein [Clostridium ljungdahlii DSM 13528]
          Length = 141

 Score = 39.3 bits (91), Expect = 0.40,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 10/101 (9%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL--DLAS----F 96
           L F+GD +  + + T L +   +     L V     V A + S+V ++L  +L+     F
Sbjct: 23  LAFIGDAVYEVFVRTYLASEHRNMSVHNLHVEAIKFVKAHSQSEVIKKLEQELSDREMYF 82

Query: 97  IRVSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGIE 133
            +   + +         +Q    A   E+LI  LYL G  +
Sbjct: 83  FKKGRNAKSGTVPKNADVQEYRFATGFETLIGFLYLIGNRD 123


>gi|301113738|ref|XP_002998639.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262111940|gb|EEY69992.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 653

 Score = 39.3 bits (91), Expect = 0.40,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 2/88 (2%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGE--LSVRFNSLVSAETCSQVARELDLASFIRVS 100
            E+LGD ++G L+   L + F  A            ++V+    +QV   +  A   R +
Sbjct: 62  FEWLGDAVIGELVGRCLLSQFHQAPLSARVFRNLRLAVVTNRNLAQVYGAMGYAVVQRRN 121

Query: 101 SDLRKDVCSFMTSIQADVVESLIAALYL 128
                         +ADVVE+++  L L
Sbjct: 122 LQEDASWKKIKLKQRADVVEAVVGELVL 149


>gi|322799941|gb|EFZ21067.1| hypothetical protein SINV_02537 [Solenopsis invicta]
          Length = 320

 Score = 39.3 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 1/45 (2%)

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              GP  +  + V  E+ G     G   SK  A Q AA   LK  
Sbjct: 87  ESQGPMPNSLYLVHAELDGKTY-VGQGLSKPLARQNAAENALKAL 130


>gi|307169043|gb|EFN61887.1| Double-stranded RNA-specific editase Adar [Camponotus floridanus]
          Length = 324

 Score = 39.3 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 1/45 (2%)

Query: 179 FRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
              GP  +  + V  E+ G     G   SK  A Q AA   LK  
Sbjct: 93  ETQGPMTNSLYLVHAELDGKTY-VGQGLSKPLARQNAAENALKAL 136


>gi|294654988|ref|XP_457071.2| DEHA2B02376p [Debaryomyces hansenii CBS767]
 gi|199429605|emb|CAG85059.2| DEHA2B02376p [Debaryomyces hansenii]
          Length = 553

 Score = 39.3 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%)

Query: 30  SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAR 89
            + S S  +  E LE +G  I+   +  +L   F ++ E  +    + L      S+  +
Sbjct: 240 KTCSESTSKRNENLEIMGKSIISCCVVYVLEKSFTNSNETSIEYLRSKLNQESYLSKFYK 299

Query: 90  ELD 92
           ELD
Sbjct: 300 ELD 302


>gi|297699341|ref|XP_002826745.1| PREDICTED: adenosine deaminase domain-containing protein 2-like
           isoform 2 [Pongo abelii]
          Length = 662

 Score = 39.3 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 2/44 (4%)

Query: 177 VTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           V    GP     F+V  E+ G+    G   SK  A+Q AA   L
Sbjct: 204 VVEELGP--CFPFSVSAELDGVVCPAGTANSKTEAKQQAALSAL 245


>gi|328726248|ref|XP_001948877.2| PREDICTED: double-stranded RNA-specific editase 1-like
           [Acyrthosiphon pisum]
          Length = 583

 Score = 39.3 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 190 TVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           T+ V +SG     G   SK+ A+++A    LK
Sbjct: 148 TISVIVSGNKY-IGYGKSKKEAKEIACRNALK 178


>gi|297485148|ref|XP_002694788.1| PREDICTED: testis nuclear RNA-binding protein-like [Bos taurus]
 gi|296478213|gb|DAA20328.1| testis nuclear RNA-binding protein-like [Bos taurus]
          Length = 597

 Score = 39.3 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           F+V VE+ G+    G   SK  A+Q AA   L
Sbjct: 159 FSVSVELDGVVCPPGTANSKLEAKQQAALSAL 190


>gi|297461712|ref|XP_873139.3| PREDICTED: adenosine deaminase domain containing 2 [Bos taurus]
          Length = 597

 Score = 39.3 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           F+V VE+ G+    G   SK  A+Q AA   L
Sbjct: 159 FSVSVELDGVVCPPGTANSKLEAKQQAALSAL 190


>gi|154285512|ref|XP_001543551.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150407192|gb|EDN02733.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 203

 Score = 38.9 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 47/133 (35%), Gaps = 22/133 (16%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLIST-----------------LLFNHFDSAKEGE 70
           TH S     +   ERL +LG +I+ L  S                       F+      
Sbjct: 51  THKSFDQGRRGFNERLSYLGKQIVQLQASLSLLEGSSSASPEKLEDPYGRTAFEHPSLQG 110

Query: 71  LSVR----FNSLVSAETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQADVVESLIAA 125
           L +      N  V+    +++A++  L   +R     R D   S +  +    + +++ A
Sbjct: 111 LDILTEDNKNMRVNRTKLAELAQQYKLQEVLRWVPRYRNDLAASGLEVVLTQAIYAVVGA 170

Query: 126 LYLDGGIEVAGTF 138
           + L+ G  VA   
Sbjct: 171 VALEKGGAVANQV 183


>gi|73992223|ref|XP_867068.1| PREDICTED: similar to Double-stranded RNA-binding protein Staufen
           homolog isoform 3 [Canis familiaris]
          Length = 257

 Score = 38.9 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           + V++ G   A+G   +K+ A++ AA  +L+  G
Sbjct: 1   MQVKV-GNHTAEGAGTNKKVAKRNAAENMLEILG 33


>gi|15896404|ref|NP_349753.1| hypothetical protein CA_C3156 [Clostridium acetobutylicum ATCC 824]
 gi|15026222|gb|AAK81093.1|AE007810_12 Uncharacterized conserved protein, YACZ B.subtilis ortholog
           [Clostridium acetobutylicum ATCC 824]
 gi|325510561|gb|ADZ22197.1| Conserved hypothetical protein [Clostridium acetobutylicum EA 2018]
          Length = 141

 Score = 38.9 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 41/112 (36%), Gaps = 10/112 (8%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL--DL-ASFIRV 99
           L F+GD +    +   + + +D      L ++    V A   S   +E+  +L    +R+
Sbjct: 23  LAFVGDAVYENFVRIYIVDKYDEMTVHRLHIKAIEFVKAHAQSTFMKEIYDELNEEEVRI 82

Query: 100 SSDLRKDVCSFMTSI-------QADVVESLIAALYLDGGIEVAGTFVDKYWK 144
               R    +             +   E+LI  LYL   I+     ++K  +
Sbjct: 83  YKRGRNAKSATSPKNADICEYRASTGFEALIGYLYLTNQIDRLNFILEKVVE 134


>gi|123440333|ref|XP_001310928.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121892718|gb|EAX97998.1| hypothetical protein TVAG_114500 [Trichomonas vaginalis G3]
          Length = 473

 Score = 38.9 bits (90), Expect = 0.48,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 42/123 (34%), Gaps = 12/123 (9%)

Query: 30  SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAR 89
            S   ++  S ER   +GD IL ++I+  + +     K   ++ +    VS +    +  
Sbjct: 209 PSFVKNHNTS-ER---IGDAILEVVITNSIISSLVGKKNYFVNKQIRIAVSNKLFGVIGE 264

Query: 90  ELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALK 149
             +  S               +  +  D  ES+   LY   G +   TF  K      + 
Sbjct: 265 HFNFPSCFI--------GPFDVEKLPGDCFESIAGKLYKLYGYDKVVTFWQKSLFAIPID 316

Query: 150 SGK 152
             +
Sbjct: 317 VAQ 319


>gi|295692212|ref|YP_003600822.1| ribonuclease iii [Lactobacillus crispatus ST1]
 gi|295030318|emb|CBL49797.1| Ribonuclease III [Lactobacillus crispatus ST1]
          Length = 147

 Score = 38.9 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 48/137 (35%), Gaps = 14/137 (10%)

Query: 34  HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL 93
           +    + + L +LGD +  ++I   L       K   L       VSA+  + +  ++  
Sbjct: 13  NPDTLNGQTLAYLGDAVYEVIIRRHLV-KGGIVKPQVLQREATHYVSAKAQAALVTKMQD 71

Query: 94  ASFI--------RVSSDLRKDVCSFMTSI----QADVVESLIAALYLDGGIEVAGTFVDK 141
              +        R   + +    +  TS+     +   E++I  LYL G  +     + K
Sbjct: 72  EEMLTDDELAAFRRGRNAKSHTKAKNTSLKTYQLSTGFEAMIGYLYLLGKNDRVAD-LSK 130

Query: 142 YWKQRALKSGKFRRDAK 158
           +      + G    D K
Sbjct: 131 WCIDTVEEDGLKNYDFK 147


>gi|156541332|ref|XP_001600771.1| PREDICTED: similar to GA14612-PA [Nasonia vitripennis]
          Length = 701

 Score = 38.9 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 14/33 (42%), Gaps = 1/33 (3%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           F V  EI G     G   SK  A Q AA   LK
Sbjct: 484 FLVHAEIEGKTY-VGQGVSKPLARQNAAENALK 515


>gi|219689078|ref|NP_001137272.1| interferon-induced, double-stranded RNA-activated protein kinase
           [Equus caballus]
 gi|61889230|gb|AAX47275.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Equus
           caballus]
          Length = 540

 Score = 38.9 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 11/73 (15%), Positives = 24/73 (32%), Gaps = 2/73 (2%)

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           S +  ++    +  +          Y+  + S      RF    +I           +K+
Sbjct: 92  SEELSKNYIGLINTYTQRNQLSL-NYE-QYESRDGGPKRFRCKYKIGWKEYPIASGSTKQ 149

Query: 210 AAEQVAAAEVLKR 222
            A+Q+AA     +
Sbjct: 150 EAKQLAAKLAYDQ 162



 Score = 36.2 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205
           EL ++      V  +++   ++GP HD  FT  V I+G    +   
Sbjct: 13  ELNKYRQKHNVVL-DFRELSKTGPPHDLTFTFRVIINGREFPEAEG 57


>gi|329767863|ref|ZP_08259377.1| hypothetical protein HMPREF0428_01074 [Gemella haemolysans M341]
 gi|328838651|gb|EGF88250.1| hypothetical protein HMPREF0428_01074 [Gemella haemolysans M341]
          Length = 143

 Score = 38.9 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 53/136 (38%), Gaps = 18/136 (13%)

Query: 27  LTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQ 86
            T  + ++  Q     L ++GD I  ++    +  +    K  +L    +++VSA   + 
Sbjct: 9   FTEKNFANPNQMQALTLAYIGDSIYDIMSREYVMKNHLG-KINDLHKTVSTIVSARAQAS 67

Query: 87  VARELDLASFIRVSSDL---------RKDVCSFMTSI----QADVVESLIAALYLDGGIE 133
               + L++ I    +          + +  +   SI     A  +E++   LYL+   E
Sbjct: 68  FMENI-LSNGILTEQEEKIYNRAKNQKNNSKAKNASIMEYKLATGLEAVFGYLYLEKNFE 126

Query: 134 VAG---TFVDKYWKQR 146
                  ++ + ++++
Sbjct: 127 RLEEMFNYIIRLYEEK 142


>gi|156408836|ref|XP_001642062.1| predicted protein [Nematostella vectensis]
 gi|156229203|gb|EDO49999.1| predicted protein [Nematostella vectensis]
          Length = 497

 Score = 38.9 bits (90), Expect = 0.53,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 25/71 (35%), Gaps = 1/71 (1%)

Query: 151 GKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
               ++  + L E+A     +   ++V       + P FT+   +           + + 
Sbjct: 10  AAINKNPVSALNEYAQKN-RMEVAFEVVKDGRNFNRPPFTMFARVGPHRFPSATSSNMKD 68

Query: 211 AEQVAAAEVLK 221
           A + AA   L+
Sbjct: 69  ARREAADMALR 79


>gi|47227529|emb|CAG04677.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 349

 Score = 38.9 bits (90), Expect = 0.53,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 14/33 (42%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           F     I G+    G+  +K+ A   AA   L+
Sbjct: 46  FAFCALIDGVEHKTGIGKNKKEARLAAAQYALE 78


>gi|307933353|dbj|BAJ21512.1| capsid protein [Omono River virus]
          Length = 1687

 Score = 38.9 bits (90), Expect = 0.53,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCSKRAAEQVAAAEVLKRE 223
            P YK+       HDP F+  +   G+  +  G   +K  A+  AA+ +L+  
Sbjct: 425 LPVYKIEAEREGTHDPSFSCQLTFRGITKSSFGK-KTKHEAKTAAASLILEEL 476


>gi|325093801|gb|EGC47111.1| RNase III domain-containing protein [Ajellomyces capsulatus H88]
          Length = 241

 Score = 38.9 bits (90), Expect = 0.54,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 47/133 (35%), Gaps = 22/133 (16%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLIST-----------------LLFNHFDSAKEGE 70
           TH S     +   ERL +LG +I+ L  S                       F+      
Sbjct: 51  THKSFDQGRRGFNERLSYLGKQIVQLQASLSLLESSSSASPEKLEDPYGRTAFEHPSLQG 110

Query: 71  LSVR----FNSLVSAETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQADVVESLIAA 125
           L +      N  V+    +++A++  L   +R     R D   S +  +    + +++ A
Sbjct: 111 LDILTEDNKNMRVNRTKLAELAQQYKLQEVLRWVPRYRNDLAASGLEVVLTQAIYAVVGA 170

Query: 126 LYLDGGIEVAGTF 138
           + L+ G  VA   
Sbjct: 171 VALEKGGAVANQV 183


>gi|307109276|gb|EFN57514.1| hypothetical protein CHLNCDRAFT_143101 [Chlorella variabilis]
          Length = 747

 Score = 38.9 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 10/128 (7%)

Query: 6   YSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
            S L+  +GY++  +  L++AL         + +  RL +LG  +L LL +   F     
Sbjct: 609 LSRLQGALGYSWRKQEALQEAL-----GGDSRGATGRLAWLGSALLQLLAAEEAFRQQPD 663

Query: 66  -AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRK-DVCSFMTSIQADVVESLI 123
            A   EL     +L +    +       L   +      R     +      A++  + +
Sbjct: 664 GAGPQELQEAAEALAAPAALAAKPGAATLGGLVSAGPGARSLQAVADKA---AELYAACL 720

Query: 124 AALYLDGG 131
            A ++DGG
Sbjct: 721 GAAFVDGG 728


>gi|146103165|ref|XP_001469498.1| RNA editing complex protein MP61 [Leishmania infantum]
 gi|134073868|emb|CAM72607.1| RNA editing complex protein MP61 [Leishmania infantum JPCM5]
 gi|322503465|emb|CBZ38550.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 587

 Score = 38.9 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 52/117 (44%), Gaps = 14/117 (11%)

Query: 18  ANRSLLEKALTHS---SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA---KEGEL 71
            +R +L +    S   S + +    +ERLEF+GD ++  ++++++   F       +G++
Sbjct: 238 KDRGILVETFNVSDNQSTNSARSWEFERLEFVGDNVVKYVLNSIISCAFPPHEGGTKGKM 297

Query: 72  SVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           +     +   +  ++    LDL                 ++  ++D+VE+L A L +
Sbjct: 298 TCFQFVMDGNDGLARGYDHLDLQQL--------ASSPRVVSKFKSDIVETLFAELQM 346


>gi|282875019|ref|ZP_06283894.1| RNase3 domain protein [Staphylococcus epidermidis SK135]
 gi|281296347|gb|EFA88866.1| RNase3 domain protein [Staphylococcus epidermidis SK135]
          Length = 128

 Score = 38.9 bits (90), Expect = 0.56,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 44/110 (40%), Gaps = 13/110 (11%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE-LDLASF----- 96
           L ++GD +L   +   +      +K   L     S VSA++ ++     L +  F     
Sbjct: 11  LAYMGDAVLDQHVREYIVLKL-QSKPHRLHQVSKSYVSAKSQAKTLEYLLGIDWFTEEEL 69

Query: 97  --IRVSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGIEVAGTFVD 140
             ++   + +    +  T IQ    +  +E++I  LYLD   E     ++
Sbjct: 70  SVLKRGRNAKSYTKAKNTDIQTYRKSSALEAVIGFLYLDHQSERLENLLE 119


>gi|255587179|ref|XP_002534167.1| conserved hypothetical protein [Ricinus communis]
 gi|223525754|gb|EEF28216.1| conserved hypothetical protein [Ricinus communis]
          Length = 89

 Score = 38.9 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           TP+Y    +   +  P F   +   G      +  SK+ AEQ+AA  V+K
Sbjct: 5   TPKYTTIQKE--ELRPVFISSLLFDGKTYTGEVCASKKEAEQLAAMAVIK 52


>gi|326444982|ref|ZP_08219716.1| SNF2/RAD54 family helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 1408

 Score = 38.9 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 10/87 (11%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTF----RSGPDHDPRFTVVVEI 195
              W +R            T LQ     K        V        G  +     V  ++
Sbjct: 338 LPVWGERDTVPDFNEM---TALQVLNQLKQKGRITKLVIDPPRLEPGAGYLAA--VTCKV 392

Query: 196 SGLAP-AQGMDCSKRAAEQVAAAEVLK 221
           +G    A+    +KR A++ AA  +L+
Sbjct: 393 AGRNMRAEAAGAAKRLAQRNAAKAMLE 419


>gi|160380524|sp|Q95JV3|ADAD2_MACFA RecName: Full=Adenosine deaminase domain-containing protein 2
          Length = 580

 Score = 38.9 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           + L E+A +   +   ++   + GP     F+V  E+ G+    G   SK  A+Q AA  
Sbjct: 115 SLLTEYAASLGIILL-FREDQQPGP--CFPFSVSAELDGVVCPAGTANSKTEAKQQAALS 171

Query: 219 VL 220
            L
Sbjct: 172 AL 173


>gi|109129347|ref|XP_001112377.1| PREDICTED: adenosine deaminase domain-containing protein 2-like
           isoform 1 [Macaca mulatta]
          Length = 562

 Score = 38.9 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           + L E+A +   +   ++   + GP     F+V  E+ G+    G   SK  A+Q AA  
Sbjct: 97  SLLTEYAASLGIILL-FREDQQPGP--CFPFSVSAELDGVVCPAGTANSKTEAKQQAALS 153

Query: 219 VL 220
            L
Sbjct: 154 AL 155


>gi|109129345|ref|XP_001112441.1| PREDICTED: adenosine deaminase domain-containing protein 2-like
           isoform 2 [Macaca mulatta]
 gi|15207991|dbj|BAB63020.1| hypothetical protein [Macaca fascicularis]
          Length = 580

 Score = 38.9 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 159 TELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAE 218
           + L E+A +   +   ++   + GP     F+V  E+ G+    G   SK  A+Q AA  
Sbjct: 115 SLLTEYAASLGIILL-FREDQQPGP--CFPFSVSAELDGVVCPAGTANSKTEAKQQAALS 171

Query: 219 VL 220
            L
Sbjct: 172 AL 173


>gi|306819815|ref|ZP_07453470.1| ribonuclease III [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304552184|gb|EFM40120.1| ribonuclease III [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 136

 Score = 38.9 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 11/101 (10%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI----- 97
           L ++GD +  + +   +      +K  +L      LV A++ +Q+ ++L     I     
Sbjct: 22  LAYIGDSVWEMYVRNFVIFKNKHSKVNKLHHISTGLVKAKSQAQMVKDLKDNDIIDEKMW 81

Query: 98  ------RVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGI 132
                 R S+              A   E+LI  LY+    
Sbjct: 82  DVVLRGRNSASNPPKNADIQDYNYATGFEALIGYLYIIKDF 122


>gi|268532474|ref|XP_002631365.1| C. briggsae CBR-RHA-1 protein [Caenorhabditis briggsae]
 gi|187036795|emb|CAP23460.1| CBR-RHA-1 protein [Caenorhabditis briggsae AF16]
          Length = 1402

 Score = 38.5 bits (89), Expect = 0.62,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 5/77 (6%)

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRA 210
           K  +D K  L  W        P Y     +      +F   + ++     A G   +K+ 
Sbjct: 101 KMSKDIKEFLYAWLGKNKHPNPVYDTKAET-RGGRQQFKCELRVTSFPYVAFGNSSNKKD 159

Query: 211 AEQVAAAE---VLKREG 224
           A   AA +    L REG
Sbjct: 160 AATNAARDFCLFLVREG 176



 Score = 38.5 bits (89), Expect = 0.69,   Method: Composition-based stats.
 Identities = 10/72 (13%), Positives = 24/72 (33%), Gaps = 4/72 (5%)

Query: 156 DAKTELQEWAHAKFGVTPEYKV-TFRSGPDHDPRFTVVVEI---SGLAPAQGMDCSKRAA 211
           ++K  L E+          Y      S        T  + +   +     +G   +K+ +
Sbjct: 274 NSKKALNEYTQKMRLPQINYVTKIKESNTVKTMETTAQLYVPQLNKGLTGKGNGSNKKVS 333

Query: 212 EQVAAAEVLKRE 223
           E   A  ++++ 
Sbjct: 334 EAACAMNIVRQM 345


>gi|241888848|ref|ZP_04776154.1| cysteinyl-tRNA synthetase [Gemella haemolysans ATCC 10379]
 gi|241864524|gb|EER68900.1| cysteinyl-tRNA synthetase [Gemella haemolysans ATCC 10379]
          Length = 143

 Score = 38.5 bits (89), Expect = 0.63,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 52/136 (38%), Gaps = 18/136 (13%)

Query: 27  LTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQ 86
            T  + ++  Q     L ++GD I  ++    +  +    K  +L    +++VSA   + 
Sbjct: 9   FTEKNFANPNQMQALTLAYIGDSIYDIMSREYVMKNHLG-KINDLHKTVSTIVSARAQAS 67

Query: 87  VARELDLASFIRVSSDL---------RKDVCSFMTSI----QADVVESLIAALYLDGGIE 133
               + L + I    +          + +  +   SI     A  +E++   LYL+   E
Sbjct: 68  FMENI-LNNSILTEQEEKIYNRAKNQKNNSKAKNASIMEYKLATGLEAVFGYLYLEKNFE 126

Query: 134 VAG---TFVDKYWKQR 146
                  ++ + ++++
Sbjct: 127 RLEEMFNYIIRLYEEK 142


>gi|307197029|gb|EFN78401.1| 39S ribosomal protein L44, mitochondrial [Harpegnathos saltator]
          Length = 284

 Score = 38.5 bits (89), Expect = 0.64,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 74/239 (30%), Gaps = 33/239 (13%)

Query: 8   TLEKRIGYAFANRSLLEKALTHSSI---------------SHSYQESYERLEFLGDRILG 52
              KR+   F +   LE+A TH                       +        G++++ 
Sbjct: 37  AFNKRLSENF-DIEKLEQAFTHKVYIFKEEQKQKEIGIEDPKLNIKDNTTFIIKGEKLVS 95

Query: 53  LLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMT 112
            ++ + L      A E  +    + L+S E  +  +  +     I         V     
Sbjct: 96  EIVQSYLTEALSLAPEDVIISLHDYLLSEEILASASLHIGAKDIILT---EEHPVAQ--- 149

Query: 113 SIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR-DAKTELQEWA------ 165
              AD   +L AAL     +  AG F+  +      +       +  ++  E        
Sbjct: 150 KTLADTFFALTAALAESVDVNHAGKFIRDFLIVLLAEKDLMEIWNP-SQPCEILDNVLHK 208

Query: 166 HAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             +    P  ++   +G +     + + +  +      G   + + A+ VAA  VL R 
Sbjct: 209 QDRSPAEP--RLIGHAGQNTLLASYHIGLYSNKEFLGSGFGQTIQEAKDVAAMNVLSRM 265


>gi|302678397|ref|XP_003028881.1| hypothetical protein SCHCODRAFT_111887 [Schizophyllum commune H4-8]
 gi|300102570|gb|EFI93978.1| hypothetical protein SCHCODRAFT_111887 [Schizophyllum commune H4-8]
          Length = 74

 Score = 38.5 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 1/53 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
             +T+L           P Y      GP H P +  +V + G    +G   +K
Sbjct: 3   HWRTKLHNKVRGNGWQPPVYDF-KAFGPSHAPMWLCIVRLQGAEYGRGDAPTK 54


>gi|260447031|emb|CBG76444.1| OO_Ba0013J05-OO_Ba0033A15.31 [Oryza officinalis]
          Length = 1333

 Score = 38.5 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 8/28 (28%), Positives = 18/28 (64%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +F++ V I G    +G+  +++AA++ A
Sbjct: 728 QFSIEVRILGEKVGEGIGKTRKAAKRQA 755


>gi|222629251|gb|EEE61383.1| hypothetical protein OsJ_15551 [Oryza sativa Japonica Group]
          Length = 927

 Score = 38.5 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 8/28 (28%), Positives = 18/28 (64%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +F++ V I G    +G+  +++AA++ A
Sbjct: 664 QFSIEVRILGEKVGEGIGKTRKAAKRQA 691


>gi|218195257|gb|EEC77684.1| hypothetical protein OsI_16738 [Oryza sativa Indica Group]
          Length = 905

 Score = 38.5 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 8/28 (28%), Positives = 18/28 (64%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +F++ V I G    +G+  +++AA++ A
Sbjct: 664 QFSIEVRILGEKVGEGIGKTRKAAKRQA 691


>gi|215697502|dbj|BAG91496.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215706329|dbj|BAG93185.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 758

 Score = 38.5 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 8/28 (28%), Positives = 18/28 (64%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +F++ V I G    +G+  +++AA++ A
Sbjct: 545 QFSIEVRILGEKVGEGIGKTRKAAKRQA 572


>gi|164662138|ref|XP_001732191.1| hypothetical protein MGL_0784 [Malassezia globosa CBS 7966]
 gi|159106093|gb|EDP44977.1| hypothetical protein MGL_0784 [Malassezia globosa CBS 7966]
          Length = 1235

 Score = 38.5 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 5/74 (6%)

Query: 147 ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS--GPDHDPRFTVVVEISGL--APAQ 202
           AL   ++  + K  +  +  ++ G  PE++       G  H       + I       A 
Sbjct: 62  ALAKTQWLDNPKNVVFAYVQSRTGSYPEFRFAEGRYHGKSH-KVIRSTLVIDEEYNIVAT 120

Query: 203 GMDCSKRAAEQVAA 216
           G   S++ AE+ AA
Sbjct: 121 GDGKSQKEAEKAAA 134


>gi|116312020|emb|CAJ86376.1| OSIGBa0155K17.3 [Oryza sativa Indica Group]
          Length = 973

 Score = 38.5 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 8/28 (28%), Positives = 18/28 (64%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +F++ V I G    +G+  +++AA++ A
Sbjct: 732 QFSIEVRILGEKVGEGIGKTRKAAKRQA 759


>gi|115459562|ref|NP_001053381.1| Os04g0529500 [Oryza sativa Japonica Group]
 gi|113564952|dbj|BAF15295.1| Os04g0529500 [Oryza sativa Japonica Group]
          Length = 779

 Score = 38.5 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 8/28 (28%), Positives = 18/28 (64%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +F++ V I G    +G+  +++AA++ A
Sbjct: 566 QFSIEVRILGEKVGEGIGKTRKAAKRQA 593


>gi|38346621|emb|CAD41201.2| OSJNBa0074L08.12 [Oryza sativa Japonica Group]
          Length = 945

 Score = 38.5 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 8/28 (28%), Positives = 18/28 (64%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +F++ V I G    +G+  +++AA++ A
Sbjct: 732 QFSIEVRILGEKVGEGIGKTRKAAKRQA 759


>gi|301117218|ref|XP_002906337.1| double stranded RNA binding, putative [Phytophthora infestans
           T30-4]
 gi|262107686|gb|EEY65738.1| double stranded RNA binding, putative [Phytophthora infestans
           T30-4]
          Length = 371

 Score = 38.5 bits (89), Expect = 0.67,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 19/62 (30%), Gaps = 1/62 (1%)

Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMD 205
           +      F  +  + L E          EY +  +    H  R+   ++I G     G  
Sbjct: 83  QIDDVANFDLNNISTLNELIQKDKKQ-VEYLIQDQGETSHRRRYVCKLQIDGKRMGYGEG 141

Query: 206 CS 207
            S
Sbjct: 142 VS 143


>gi|126342287|ref|XP_001363000.1| PREDICTED: similar to NF-kappaB repressing factor, [Monodelphis
           domestica]
          Length = 680

 Score = 38.5 bits (89), Expect = 0.67,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 5/53 (9%)

Query: 169 FGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
             +T EYK      P  +  +   V + G   A+G   SK+ ++  AA++ LK
Sbjct: 350 NKMTIEYK--HEMMP--NRTWRCQVFLQGHCLAEGYG-SKKVSKHAAASKALK 397


>gi|224122146|ref|XP_002330552.1| hypothetical protein POPTRDRAFT_270173 [Populus trichocarpa]
 gi|222872110|gb|EEF09241.1| hypothetical protein POPTRDRAFT_270173 [Populus trichocarpa]
          Length = 916

 Score = 38.5 bits (89), Expect = 0.69,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 18/42 (42%)

Query: 183 PDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREG 224
           P   P F   +E+        +   K+ AEQ AA   LKR G
Sbjct: 36  PQKAPLFRCQLELPEFTVVSDICRKKKDAEQSAADLALKRLG 77


>gi|242075834|ref|XP_002447853.1| hypothetical protein SORBIDRAFT_06g016980 [Sorghum bicolor]
 gi|241939036|gb|EES12181.1| hypothetical protein SORBIDRAFT_06g016980 [Sorghum bicolor]
          Length = 1240

 Score = 38.5 bits (89), Expect = 0.69,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 11/69 (15%)

Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL 198
           +D  WK+     G   +  K  LQ++        P+Y          D +F   V +  L
Sbjct: 360 IDDIWKK-----GDSGKMPKAVLQKFCQKLGWEAPKYNKISER----DGKFVYSVNV--L 408

Query: 199 APAQGMDCS 207
             A G   S
Sbjct: 409 RGATGRGKS 417


>gi|289422429|ref|ZP_06424272.1| ribonuclease III [Peptostreptococcus anaerobius 653-L]
 gi|289157001|gb|EFD05623.1| ribonuclease III [Peptostreptococcus anaerobius 653-L]
          Length = 135

 Score = 38.5 bits (89), Expect = 0.70,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 14/111 (12%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI----- 97
           L +LGD +    I   L       K  +L       VSA   S+  +   L   +     
Sbjct: 19  LAYLGDTVYESYIREYLIKRNIFLKINDLHKSAIKYVSAHAQSKAIK--GLEDILTEEET 76

Query: 98  ---RVSSDLRKDVCSFMTSI----QADVVESLIAALYLDGGIEVAGTFVDK 141
              +   + +K+  +   S+     A   E++I  +YL G I+     V++
Sbjct: 77  TIFKRGRNHKKNTAAKNASVIDYRHATGFEAVIGYVYLKGDIDRLDYLVEE 127


>gi|251809947|ref|ZP_04824420.1| ribonuclease III [Staphylococcus epidermidis BCM-HMP0060]
 gi|251806490|gb|EES59147.1| ribonuclease III [Staphylococcus epidermidis BCM-HMP0060]
 gi|329734675|gb|EGG70982.1| RNase3 domain protein [Staphylococcus epidermidis VCU028]
          Length = 132

 Score = 38.5 bits (89), Expect = 0.70,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 44/110 (40%), Gaps = 13/110 (11%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE-LDLASF----- 96
           L ++GD +L   +   +      +K   L     S VSA++ ++     L +  F     
Sbjct: 15  LAYMGDAVLDQHVREYIVLKL-QSKPHRLHQVSKSYVSAKSQAKTLEYLLGIDWFTEEEL 73

Query: 97  --IRVSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGIEVAGTFVD 140
             ++   + +    +  T IQ    +  +E++I  LYLD   E     ++
Sbjct: 74  SVLKRGRNAKSYTKAKNTDIQTYRKSSALEAVIGFLYLDHQSERLENLLE 123


>gi|321458151|gb|EFX69224.1| maleless-like protein [Daphnia pulex]
          Length = 1191

 Score = 38.5 bits (89), Expect = 0.70,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 10/71 (14%)

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVT---FRSGPDHDPRFTVVVEISGLA-PAQGMD 205
             K  RD K  L  +   KF + P Y V     +SG      +   + + G +  A G  
Sbjct: 2   ENKGERDIKEFLYAYLMKKFRIPPVYVVNSMGDQSG------YYCELRVRGFSFVATGRS 55

Query: 206 CSKRAAEQVAA 216
            SKR A+  AA
Sbjct: 56  SSKRNAQANAA 66


>gi|195435714|ref|XP_002065824.1| GK18621 [Drosophila willistoni]
 gi|194161909|gb|EDW76810.1| GK18621 [Drosophila willistoni]
          Length = 297

 Score = 38.5 bits (89), Expect = 0.70,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           + ++    +P +++  +S   + P+F     ++ +    G+   K+ A Q AA+ +L
Sbjct: 102 FCNSHDMPSPIFEMVEKSRNPNAPKFVACCTLASIKR-YGISDKKKEAHQRAASAIL 157


>gi|291001387|ref|XP_002683260.1| predicted protein [Naegleria gruberi]
 gi|284096889|gb|EFC50516.1| predicted protein [Naegleria gruberi]
          Length = 369

 Score = 38.5 bits (89), Expect = 0.71,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 49/144 (34%), Gaps = 15/144 (10%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFN 61
             +  + LE   G    N   ++ AL         +   ++L   GD  L  LI+  L  
Sbjct: 13  PTISATELESIFGLKAHNCD-VKTAL------DPTKAKCKKLALFGDSKLSNLITEKLKP 65

Query: 62  HFDS--AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVV 119
             D      G++S++        T +   +      ++ +  +  +            V 
Sbjct: 66  LLDDESIPLGDISMKRERYTMNSTLASYLKYKHEEIYLSILENDIEKREQLNDHSLGTVF 125

Query: 120 ESLIAALYL---DGGIEVAGTFVD 140
           E+L    YL   +  IE+  + ++
Sbjct: 126 EALF---YLAPQEKCIEIVNSLIE 146


>gi|319399721|gb|EFV87970.1| RNase3 domain protein [Staphylococcus epidermidis FRI909]
          Length = 128

 Score = 38.5 bits (89), Expect = 0.74,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 13/110 (11%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE-LDLASF----- 96
           L ++GD +L   +   +      +K   L     S VSA++ ++     LD+  F     
Sbjct: 11  LAYMGDAVLDQHVREYIVLKL-QSKPHRLHQVSKSYVSAKSQAETLEYLLDIDWFTEEEL 69

Query: 97  --IRVSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGIEVAGTFVD 140
             ++   + +    +  T IQ    +  +E++I  LYLD   E     ++
Sbjct: 70  SVLKRGRNAKSYTKAKNTDIQTYRKSSALEAVIGFLYLDHQSERLENLLE 119


>gi|290985188|ref|XP_002675308.1| predicted protein [Naegleria gruberi]
 gi|284088903|gb|EFC42564.1| predicted protein [Naegleria gruberi]
          Length = 599

 Score = 38.5 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 13/71 (18%)

Query: 164 WAHAKFG-VTPEYKVTFRSGPDHDPRFTVVVEISGLAPA--QGMDCSKRAAEQVAAAE-- 218
           W+      + P Y +    GP H   F   +++S L      G   +K+ A++ A  +  
Sbjct: 517 WSQTFGQNMKPTY-IETCYGPSHITSFRCEIDLSALKLTNQIGDGKTKKEAKKNACTKSC 575

Query: 219 -------VLKR 222
                   LK+
Sbjct: 576 ISLDQIGALKK 586


>gi|50752008|ref|XP_422612.1| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 326

 Score = 38.5 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 49/159 (30%), Gaps = 11/159 (6%)

Query: 52  GLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFM 111
              ++      +       ++     L   +  S VA+ L L      +           
Sbjct: 128 RSYLTRSFEAAYPRLPASGVAALVAFLTGRQLVSHVAQNLALPDLALCAQFPAP------ 181

Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR----RDAKTELQEWAHA 167
            ++      +++ AL    G E AG FV  +   + +    F      +    L E    
Sbjct: 182 PAVLHATFFAVVGALLGSSGPERAGLFVRDFLIPQLIGKDLFEIWEVVNPMGLLVEELAK 241

Query: 168 KFGVTPEYKVTFRSGPDH-DPRFTVVVEISGLAPAQGMD 205
           +    PE ++T + G     P + V +       A+G  
Sbjct: 242 RNISAPEPRITRQLGVSTVLPLYFVGLYCDKKIIAEGPG 280


>gi|16041086|dbj|BAB69710.1| hypothetical protein [Macaca fascicularis]
          Length = 345

 Score = 38.5 bits (89), Expect = 0.79,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           +  + L ++A  +  V  + K T  +G    P F     + G+    G+  +K+ +   A
Sbjct: 9   NPVSALHQFAQMQ-RVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNA 67

Query: 216 AAEVLKRE 223
           A   L   
Sbjct: 68  AKLALDEL 75


>gi|198426348|ref|XP_002130212.1| PREDICTED: zinc finger protein [Ciona intestinalis]
          Length = 945

 Score = 38.5 bits (89), Expect = 0.80,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 8/94 (8%)

Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDA------KTELQEWAHAKFGVTPEYKVTFRSGP 183
             +  A      YWKQ+ L+  K           K  L  W  +K    P+Y +T     
Sbjct: 208 SNLSAAYIKQLPYWKQKRLQQVKDPNKPIVATEVKAYLYAWL-SKKKARPDYNITAHGSH 266

Query: 184 DHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAA 216
            +   +   + + G    A+G   +K+ ++  AA
Sbjct: 267 PYRQTYVCEIVVHGYDYVAKGSAGNKKDSQTRAA 300


>gi|92081460|dbj|BAE93277.1| zinc finger protein [Ciona intestinalis]
          Length = 947

 Score = 38.5 bits (89), Expect = 0.80,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 8/94 (8%)

Query: 130 GGIEVAGTFVDKYWKQRALKSGKFRRDA------KTELQEWAHAKFGVTPEYKVTFRSGP 183
             +  A      YWKQ+ L+  K           K  L  W  +K    P+Y +T     
Sbjct: 210 SNLSAAYIKQLPYWKQKRLQQVKDPNKPIVATEVKAYLYAWL-SKKKARPDYNITAHGSH 268

Query: 184 DHDPRFTVVVEISGLAP-AQGMDCSKRAAEQVAA 216
            +   +   + + G    A+G   +K+ ++  AA
Sbjct: 269 PYRQTYVCEIVVHGYDYVAKGSAGNKKDSQTRAA 302


>gi|308509256|ref|XP_003116811.1| CRE-RHA-1 protein [Caenorhabditis remanei]
 gi|308241725|gb|EFO85677.1| CRE-RHA-1 protein [Caenorhabditis remanei]
          Length = 1338

 Score = 38.1 bits (88), Expect = 0.80,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 25/74 (33%), Gaps = 8/74 (10%)

Query: 156 DAKTELQEWAHAKFGVTPEYKV------TFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           ++K  L E+          Y        T R+       +     ++     +G   +K+
Sbjct: 178 NSKKALNEYTQKMKLPQVVYTTKIKEANTVRTMETTAQLYVPQ--LNKTLIGKGSGSNKK 235

Query: 210 AAEQVAAAEVLKRE 223
            +E   A  V+++ 
Sbjct: 236 VSESGCAMNVVRQM 249


>gi|307104594|gb|EFN52847.1| hypothetical protein CHLNCDRAFT_138311 [Chlorella variabilis]
          Length = 1640

 Score = 38.1 bits (88), Expect = 0.80,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 26/78 (33%), Gaps = 14/78 (17%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSG--------PDHDPR--FTVVVEISGLAPAQGM 204
           +  K  L EW   +    P Y+     G          H  +    VVV +     A   
Sbjct: 193 KSPKLLLHEWCLREKQPRPRYRAISAEGGLWKCKVVLPHPKQQDKDVVVFLDDSQAA--- 249

Query: 205 DCSKRAAEQVAAAEVLKR 222
             S+  AEQ AA   L R
Sbjct: 250 -PSEDEAEQRAAVAALHR 266


>gi|329729421|gb|EGG65824.1| RNase3 domain protein [Staphylococcus epidermidis VCU144]
          Length = 132

 Score = 38.1 bits (88), Expect = 0.82,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 13/110 (11%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE-LDLASF----- 96
           L ++GD +L   +   +      +K   L     S VSA++ ++     LD+  F     
Sbjct: 15  LAYMGDAVLDQHVREYIVLKL-QSKPHRLHQVSKSYVSAKSQAKTLEYLLDIDWFTDEEL 73

Query: 97  --IRVSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGIEVAGTFVD 140
             ++   + +    +  T IQ    +  +E++I  LYLD   E     ++
Sbjct: 74  SVLKRGRNAKSYTKAKNTDIQTYRKSSALEAVIGFLYLDHQSERLENLLE 123


>gi|226359546|ref|YP_002777324.1| ribonuclease [Rhodococcus opacus B4]
 gi|226238031|dbj|BAH48379.1| putative ribonuclease [Rhodococcus opacus B4]
          Length = 624

 Score = 38.1 bits (88), Expect = 0.82,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197
           L   A       PE++     GP H PRFT  V ++G
Sbjct: 560 LMSLAQNNRQAPPEWE-IRTDGPAHAPRFTATVHLAG 595


>gi|291065626|gb|ADD73902.1| dsRNA binding protein [Banna virus]
 gi|291065628|gb|ADD73903.1| dsRNA binding protein [Banna virus]
          Length = 208

 Score = 38.1 bits (88), Expect = 0.83,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 167 AKFGVTP-EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQV 214
           A+    P  +K     GP HDPR+ +  ++      Q  D SK+ A Q 
Sbjct: 12  ARSQGLPLNFKTVGCEGPSHDPRYVIECKLLDFQH-QCTDSSKKRAIQK 59


>gi|324508716|gb|ADY43677.1| Microprocessor complex subunit DGCR8/PASHA [Ascaris suum]
          Length = 637

 Score = 38.1 bits (88), Expect = 0.84,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 20/61 (32%), Gaps = 15/61 (24%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           LQE    +           ++G   D  F V           G   SK+ A+  AA   L
Sbjct: 353 LQEK-QRREQQL------QQNGEPIDSEFVV--------LGSGCGNSKKTAKLDAARSAL 397

Query: 221 K 221
           K
Sbjct: 398 K 398


>gi|329738061|gb|EGG74282.1| RNase3 domain protein [Staphylococcus epidermidis VCU045]
          Length = 128

 Score = 38.1 bits (88), Expect = 0.84,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 13/110 (11%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE-LDLASF----- 96
           L ++GD +L   +   +      +K   L     S VSA++ ++     LD+  F     
Sbjct: 11  LAYMGDAVLDQHVREYIVLKL-QSKPHRLHQVSKSYVSAKSQAKTLEYLLDIDWFTEEEL 69

Query: 97  --IRVSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGIEVAGTFVD 140
             ++   + +    +  T IQ    +  +E++I  LYLD   E     ++
Sbjct: 70  SVLKRGRNAKSYTKAKNTDIQTYRKSSALEAVIGFLYLDHQSERLENLLE 119


>gi|297699339|ref|XP_002826744.1| PREDICTED: adenosine deaminase domain-containing protein 2-like
           isoform 1 [Pongo abelii]
          Length = 580

 Score = 38.1 bits (88), Expect = 0.88,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           F+V  E+ G+    G   SK  A+Q AA   L
Sbjct: 142 FSVSAELDGVVCPAGTANSKTEAKQQAALSAL 173


>gi|223972688|ref|NP_631913.3| adenosine deaminase domain-containing protein 2 isoform 1 [Homo
           sapiens]
          Length = 665

 Score = 38.1 bits (88), Expect = 0.88,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           F+V  E+ G+    G   SK  A+Q AA   L
Sbjct: 217 FSVSAELDGVVCPAGTANSKTEAKQQAALSAL 248


>gi|260812205|ref|XP_002600811.1| hypothetical protein BRAFLDRAFT_229359 [Branchiostoma floridae]
 gi|229286101|gb|EEN56823.1| hypothetical protein BRAFLDRAFT_229359 [Branchiostoma floridae]
          Length = 531

 Score = 38.1 bits (88), Expect = 0.88,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 26/80 (32%), Gaps = 12/80 (15%)

Query: 158 KTELQ---EWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA--PAQGM-------D 205
           K+  Q   E        +P Y +    GP     F   V +  LA               
Sbjct: 435 KSAPQMLEEMCQKNQWGSPVYSLHSTMGPGERQLFLYKVTVPALASQYPSAQPFQPTKLA 494

Query: 206 CSKRAAEQVAAAEVLKREGI 225
            S   A+ VAA  VL + GI
Sbjct: 495 PSVEEAKSVAAEFVLNQLGI 514


>gi|119615897|gb|EAW95491.1| testis nuclear RNA-binding protein-like, isoform CRA_a [Homo
           sapiens]
 gi|189054790|dbj|BAG37613.1| unnamed protein product [Homo sapiens]
          Length = 583

 Score = 38.1 bits (88), Expect = 0.88,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           F+V  E+ G+    G   SK  A+Q AA   L
Sbjct: 145 FSVSAELDGVVCPAGTANSKTEAKQQAALSAL 176


>gi|223972690|ref|NP_001138872.1| adenosine deaminase domain-containing protein 2 isoform 2 [Homo
           sapiens]
 gi|74730183|sp|Q8NCV1|ADAD2_HUMAN RecName: Full=Adenosine deaminase domain-containing protein 2;
           AltName: Full=Testis nuclear RNA-binding protein-like
 gi|20513942|gb|AAM22869.1|AF447586_1 unknown [Homo sapiens]
 gi|23273980|gb|AAH33491.1| ADAD2 protein [Homo sapiens]
 gi|325463397|gb|ADZ15469.1| adenosine deaminase domain containing 2 [synthetic construct]
          Length = 583

 Score = 38.1 bits (88), Expect = 0.88,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           F+V  E+ G+    G   SK  A+Q AA   L
Sbjct: 145 FSVSAELDGVVCPAGTANSKTEAKQQAALSAL 176


>gi|34526549|dbj|BAC85152.1| FLJ00337 protein [Homo sapiens]
          Length = 288

 Score = 38.1 bits (88), Expect = 0.88,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           F+V  E+ G+    G   SK  A+Q AA   L
Sbjct: 82  FSVSAELDGVVCPAGTANSKTEAKQQAALSAL 113


>gi|21751785|dbj|BAC04032.1| unnamed protein product [Homo sapiens]
 gi|119615898|gb|EAW95492.1| testis nuclear RNA-binding protein-like, isoform CRA_b [Homo
           sapiens]
          Length = 665

 Score = 38.1 bits (88), Expect = 0.88,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           F+V  E+ G+    G   SK  A+Q AA   L
Sbjct: 217 FSVSAELDGVVCPAGTANSKTEAKQQAALSAL 248


>gi|321450358|gb|EFX62407.1| hypothetical protein DAPPUDRAFT_270469 [Daphnia pulex]
          Length = 140

 Score = 38.1 bits (88), Expect = 0.89,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 36/111 (32%), Gaps = 38/111 (34%)

Query: 112 TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGV 171
             I AD  E+LI AL +     V         + R ++ G                    
Sbjct: 19  PKIYADSFEALIGALRI-----VCER------EDREIRKGNLI----------------- 50

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
                      PD +  F VV+E+       G   S +AA+  AA   ++R
Sbjct: 51  --------EKKPDGN--FHVVLEVQNTQYFHGSGPSLKAAKTTAAKLGIRR 91


>gi|241950193|ref|XP_002417819.1| 60S ribosomal protein L15, mitochondrial precursor, putative
           [Candida dubliniensis CD36]
 gi|223641157|emb|CAX45534.1| 60S ribosomal protein L15, mitochondrial precursor, putative
           [Candida dubliniensis CD36]
          Length = 220

 Score = 38.1 bits (88), Expect = 0.90,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 61/155 (39%), Gaps = 17/155 (10%)

Query: 1   MSALRYSTLEKRIG--YAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL 58
           ++    + ++  +G  Y   +  +  + +TH S  +  +   E+L  +G ++L L  +  
Sbjct: 53  LNETNINHIKSFLGDKYNIPD-EIALQVITHKSFGNGIKPYNEKLAAMGSKLLSLYFAKY 111

Query: 59  LFNHFDSAKEG----EL----SVRFNSLVSAETCSQVARELDLASFI----RVSSDLRKD 106
           + N     + G     L    S     L S +T +  A+  ++   +    R S+   + 
Sbjct: 112 VTNQPCKHENGVEGKNLDVLGSPMSRELPSLKTAAIFAKLNNINEIMFWHTRNSTLGFES 171

Query: 107 VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141
                 S   +++ SL+ A+    G   A  F+ +
Sbjct: 172 SGELKVS--GELLYSLVGAVNFFHGKNKAEEFITE 204


>gi|154345606|ref|XP_001568740.1| RNA editing complex protein MP61 [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134066082|emb|CAM43870.1| RNA editing complex protein MP61 [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 598

 Score = 38.1 bits (88), Expect = 0.90,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 54/116 (46%), Gaps = 14/116 (12%)

Query: 19  NRSLLEKALTHS---SISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK---EGELS 72
           +R +L +    S   SI+ +    +ERLEF+GD ++  ++++++   F   +   +G+L+
Sbjct: 250 DRGILVETFNVSDSQSINSARSWEFERLEFVGDNVVKYILNSVISCTFPPHEGGAKGKLT 309

Query: 73  VRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
                +   +  ++    LDL                 ++  ++D+VE+L A L +
Sbjct: 310 CFQFVMDGNDGLARGYDHLDLQQL--------ASSVRVVSKFKSDIVETLFAELQM 357


>gi|313218350|emb|CBY41585.1| unnamed protein product [Oikopleura dioica]
          Length = 165

 Score = 38.1 bits (88), Expect = 0.90,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            F V +E +     +G+  +K+ AE  AA  +LK
Sbjct: 44  EFKVTLE-NNGEIFEGIGSNKKKAEHRAAFNLLK 76


>gi|170585520|ref|XP_001897531.1| WW domain containing protein [Brugia malayi]
 gi|158595078|gb|EDP33653.1| WW domain containing protein [Brugia malayi]
          Length = 936

 Score = 38.1 bits (88), Expect = 0.92,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 18/61 (29%), Gaps = 15/61 (24%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           LQE    +             G   D  F V           G   SK+ A+  AA   L
Sbjct: 654 LQEK-QRREQRL------QEHGEQPDADFVV--------LGTGCGNSKKTAKLDAARNAL 698

Query: 221 K 221
           K
Sbjct: 699 K 699


>gi|50261841|gb|AAT72473.1| AT1G01040 [Arabidopsis lyrata subsp. petraea]
          Length = 179

 Score = 38.1 bits (88), Expect = 0.93,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 18/42 (42%)

Query: 57 TLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIR 98
            LF  +    EG+L+     +VS     Q A    L S+I+
Sbjct: 1  RYLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 42


>gi|321468839|gb|EFX79822.1| hypothetical protein DAPPUDRAFT_224986 [Daphnia pulex]
          Length = 724

 Score = 38.1 bits (88), Expect = 0.94,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 13/39 (33%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVV 193
           +   + L E         P ++     GPDH   F   V
Sbjct: 669 KHPVSILHELCTKHHWEPPVFEQVLDIGPDHLKHFLFKV 707


>gi|226287136|gb|EEH42649.1| RNase III domain-containing protein [Paracoccidioides brasiliensis
           Pb18]
          Length = 272

 Score = 38.1 bits (88), Expect = 0.96,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 23/131 (17%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLISTLLFN------------------HFDSAKEG 69
           TH S     +   ERL +LG +I+ L  S  L                       S +  
Sbjct: 129 THKSFDQGRRGFNERLSYLGKQIVQLQASLSLLESASTSSPKQEDPYGRAPFDHPSLQGL 188

Query: 70  E--LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALY 127
           E       N  ++    +Q+A +  L   +R  +DL +     +  +    + +++ A+ 
Sbjct: 189 EVLTQDNKNMKLNRTKIAQLAHQYKLEEVLRWRNDLVESG---LEVVLTQAIYAVVGAVA 245

Query: 128 LDGGIEVAGTF 138
           L+ G  VA   
Sbjct: 246 LEKGGVVANQV 256


>gi|195435716|ref|XP_002065825.1| GK18578 [Drosophila willistoni]
 gi|194161910|gb|EDW76811.1| GK18578 [Drosophila willistoni]
          Length = 248

 Score = 38.1 bits (88), Expect = 0.96,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           +  +     P +++  ++   + P+F     ++ +    G+   K+ A Q AA+ +L
Sbjct: 44  FCKSHDMPYPVFEMVEQNRNPNAPKFVACCTLASIKR-YGISDKKKEAHQKAASAIL 99


>gi|290974920|ref|XP_002670192.1| predicted protein [Naegleria gruberi]
 gi|284083748|gb|EFC37448.1| predicted protein [Naegleria gruberi]
          Length = 643

 Score = 38.1 bits (88), Expect = 0.97,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 3/38 (7%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAA 211
           EY++       H   F VVV+I           SK+ A
Sbjct: 462 EYEIIDAEPKPH---FQVVVKIGESYITTARGKSKKDA 496


>gi|195998788|ref|XP_002109262.1| hypothetical protein TRIADDRAFT_20896 [Trichoplax adhaerens]
 gi|190587386|gb|EDV27428.1| hypothetical protein TRIADDRAFT_20896 [Trichoplax adhaerens]
          Length = 931

 Score = 38.1 bits (88), Expect = 0.98,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 9/58 (15%)

Query: 160 ELQEWAHAKFGVT-PEYKVTFRSGPDHDPRFTVVVEI-----SGLAPAQGMDCSKRAA 211
           +L  +          +Y     +GPDH   +T  + I       +    G   +K+ A
Sbjct: 22  KLNIYLQKNKLPLNFDYT---SNGPDHLRTYTASMTITIKHLGKVITGSGSGPTKKQA 76


>gi|302678207|ref|XP_003028786.1| hypothetical protein SCHCODRAFT_59760 [Schizophyllum commune H4-8]
 gi|300102475|gb|EFI93883.1| hypothetical protein SCHCODRAFT_59760 [Schizophyllum commune H4-8]
          Length = 231

 Score = 38.1 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 53/165 (32%), Gaps = 15/165 (9%)

Query: 5   RYSTLEKRIGYAFAN----RSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLF 60
           + S+ E+ +   FA       L  + +TH S   +         F+G R+L   +   L 
Sbjct: 23  KASSFEEHLNGLFAPLKFPPELARRIMTHGSHPRAVAGHNAGFTFMGRRVLKAYLLLFLS 82

Query: 61  NHFDSAKEGELSVRFNSLVSAETCSQ-VARELDLASFIRV----------SSDLRKDVCS 109
           +  +     +L    +  ++     + V  +  L   +               +     S
Sbjct: 83  SSPNLRPSHDLEAIVDKALNTYLLGEHVGNKWGLGRNMLWQPTVPRERIPGEPVNFVKTS 142

Query: 110 FMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR 154
            +  +Q D V +++  ++   G  VA          R L     R
Sbjct: 143 GLYKVQGDCVAAILGGIFHQFGGSVAHRVFHTRLLPRLLDDPDVR 187


>gi|156839185|ref|XP_001643286.1| hypothetical protein Kpol_1027p2 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156113890|gb|EDO15428.1| hypothetical protein Kpol_1027p2 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 242

 Score = 38.1 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 51/137 (37%), Gaps = 18/137 (13%)

Query: 21  SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTL---------------LFNHFDS 65
            LL +  TH S +H  +   E+L  LG + L L                    +    D+
Sbjct: 77  DLLLQCFTHKSFAHGIKPYNEKLSLLGLQFLKLQAGIYSISQSVNLSPVQAGKIQKQIDN 136

Query: 66  AKEGELSVRFNSL-VSAETCSQVARELDLASFI--RVSSDLRKDVCSFMTSIQADVVESL 122
                L  +F+ L +S  + S+   E +L S I  ++    +    +   +I + V+ +L
Sbjct: 137 LNFTNLGTQFSKLIISKYSTSKFIIEKNLDSLIFWKMRDPFKAKNYNGDHTINSTVLAAL 196

Query: 123 IAALYLDGGIEVAGTFV 139
           I  +    G      F+
Sbjct: 197 IGGILKTNGPAKTANFI 213


>gi|71654841|ref|XP_816032.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70881133|gb|EAN94181.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 2180

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 5/51 (9%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEIS-----GLAPAQGMDCSKRAAEQVAAAEV 219
            ++V    G D    +   V +      G   A GM C+ + AE +AA   
Sbjct: 106 VFQVQEVKGNDGSQLYHCRVRLPFQSQTGEVWAHGMACNGKDAEMLAAMHA 156


>gi|329769071|ref|ZP_08260493.1| hypothetical protein HMPREF0433_00257 [Gemella sanguinis M325]
 gi|328839562|gb|EGF89138.1| hypothetical protein HMPREF0433_00257 [Gemella sanguinis M325]
          Length = 143

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 20/137 (14%)

Query: 27  LTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQ 86
            T  + S+  Q     L ++GD I  ++    +  +    K  EL  + +++VSA   + 
Sbjct: 9   FTEKNFSNPNQMQALTLAYIGDSIYDIMSREYVMKNHLG-KINELHKKVSTIVSARAQAS 67

Query: 87  VARELDLASFIRVSSDLRKDVCS----------FMTSI----QADVVESLIAALYLDGGI 132
               + L + I ++ D  K                 SI     A  +E++   LYL+   
Sbjct: 68  FMENM-LENNI-LTEDEEKIYNRAKNQKNNSKAKNASIMEYKLATGLEAVFGYLYLEKNF 125

Query: 133 EVAG---TFVDKYWKQR 146
           E       ++ K ++++
Sbjct: 126 ERLEEMFNYIIKLYEEK 142


>gi|156360560|ref|XP_001625095.1| predicted protein [Nematostella vectensis]
 gi|156211911|gb|EDO32995.1| predicted protein [Nematostella vectensis]
          Length = 778

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 13/85 (15%)

Query: 146 RALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQG-- 203
                    +D K  L+ +   +     EY+V   +GP H   +   V++  +  A G  
Sbjct: 247 EVEHEEHHFKDPKKTLRGYFEREGLDL-EYEV-EETGPGHARVYHCRVKLP-IELANGDP 303

Query: 204 -------MDCSKRAAEQVAAAEVLK 221
                      KR +    A E  +
Sbjct: 304 MYAEAMVTGK-KRESVLACATEACR 327


>gi|27467211|ref|NP_763848.1| hypothetical protein SE0293 [Staphylococcus epidermidis ATCC 12228]
 gi|57866116|ref|YP_187767.1| hypothetical protein SERP0171 [Staphylococcus epidermidis RP62A]
 gi|242241862|ref|ZP_04796307.1| ribonuclease III [Staphylococcus epidermidis W23144]
 gi|293367906|ref|ZP_06614544.1| cysteine-tRNA ligase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|27314753|gb|AAO03890.1|AE016744_293 conserved hypothetical protein [Staphylococcus epidermidis ATCC
           12228]
 gi|57636774|gb|AAW53562.1| conserved hypothetical protein [Staphylococcus epidermidis RP62A]
 gi|242234640|gb|EES36952.1| ribonuclease III [Staphylococcus epidermidis W23144]
 gi|291317935|gb|EFE58343.1| cysteine-tRNA ligase [Staphylococcus epidermidis M23864:W2(grey)]
          Length = 132

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 13/110 (11%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARE-LDLASF----- 96
           L ++GD +L   +   +      +K   L     S VSA++ ++     LD+  F     
Sbjct: 15  LAYMGDAVLDQHVREYIVLKL-QSKPHRLHQVSKSYVSAKSQAKTLEYLLDIDWFTEEEL 73

Query: 97  --IRVSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGIEVAGTFVD 140
             ++   + +    +  T IQ    +  +E++I  LYLD   E     ++
Sbjct: 74  SVLKRGRNAKSYTKAKNTDIQTYRKSSALEAVIGFLYLDHQSERLENLLE 123


>gi|242025160|ref|XP_002432994.1| ATP-dependent RNA helicase A, putative [Pediculus humanus corporis]
 gi|212518503|gb|EEB20256.1| ATP-dependent RNA helicase A, putative [Pediculus humanus corporis]
          Length = 1249

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP-AQGMDCSKRAAEQ 213
            D K+    W   K G TP + V   +G  +  RF   +++ G +    G   +K+ A+ 
Sbjct: 1   MDIKSYFHAWC-IKSGRTPTFDV-RAAGLKNRQRFICELKVDGYSYIGCGNSTNKKDAQF 58

Query: 214 VAAAE 218
            AA +
Sbjct: 59  NAARD 63


>gi|322822628|gb|EFZ28624.1| hypothetical protein TCSYLVIO_5148 [Trypanosoma cruzi]
          Length = 1905

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 5/51 (9%)

Query: 174 EYKVTFRSGPDHDPRFTVVVEIS-----GLAPAQGMDCSKRAAEQVAAAEV 219
            ++V    G D    +   V +      G   A GM C+ + AE +AA   
Sbjct: 106 VFQVQEVKGNDGSQLYHCRVRLPFQSQTGEVWAHGMACNGKDAEMLAAMHA 156


>gi|168057245|ref|XP_001780626.1| HEN1 protein [Physcomitrella patens subsp. patens]
 gi|162667894|gb|EDQ54512.1| HEN1 protein [Physcomitrella patens subsp. patens]
          Length = 951

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 206 CSKRAAEQVAAAEVLKREGI 225
             K+ AEQ AA   L++ GI
Sbjct: 60  RRKKDAEQDAALHALQKMGI 79


>gi|322505761|emb|CBZ14859.1| RNA editing complex protein MP67 [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 575

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 37/101 (36%), Gaps = 13/101 (12%)

Query: 30  SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF---NSLVSAETCSQ 86
           SS      E++ERLE +GD     L    +   F + + G  +       +L S      
Sbjct: 237 SSERIHRGEAFERLEMVGDSFFKSLTPDRMHAVFPADEGGLTTGLQYFERTLDSNHGLLA 296

Query: 87  VARELDLASFIRVSSDLRKDVCSF-MTSIQADVVESLIAAL 126
           +   L L   I          C       +ADVVE++I  L
Sbjct: 297 IYDYLGLDDII---------GCYLANNKAKADVVEAIIGEL 328


>gi|321469017|gb|EFX79999.1| hypothetical protein DAPPUDRAFT_244241 [Daphnia pulex]
          Length = 109

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 29/89 (32%), Gaps = 2/89 (2%)

Query: 132 IEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTV 191
           IE      ++       +      D    L  W   K    P Y     SG      F +
Sbjct: 8   IENFSQLHEEVLNDEIREPDPLE-DFCEVLNSWLKKKGLAMPYYICVGTSGSGPYLNFIM 66

Query: 192 VVEIS-GLAPAQGMDCSKRAAEQVAAAEV 219
             +   G   A G   + + A+ VAAA++
Sbjct: 67  TCQCHHGSDLAIGKGNTVKIAKNVAAAQM 95


>gi|170091244|ref|XP_001876844.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164648337|gb|EDR12580.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 234

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 47/148 (31%), Gaps = 18/148 (12%)

Query: 21  SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVS 80
            L  + LTH+S   +       L F+G R+L   +   L +      E +L       + 
Sbjct: 54  ELARRILTHASHQTATNGHNASLSFIGRRVLDSYLHLFLTSSSALTPEHDLENIAYHTLH 113

Query: 81  AETCSQ-VARELDLASFIRV--------------SSDLRKDVCSFMTSIQADVVESLIAA 125
                + V  +  L   +R               S DLRK        +Q D V +++  
Sbjct: 114 TYALGEHVGSKWGLGRTLRWVPAIAPEVREQVSDSPDLRKVGLY---KVQGDAVTAVMGG 170

Query: 126 LYLDGGIEVAGTFVDKYWKQRALKSGKF 153
           ++   G  VA            L  G  
Sbjct: 171 IFSQFGGSVAHRVFHTRLLPCMLVKGAL 198


>gi|145244913|ref|XP_001394726.1| hypothetical protein ANI_1_2256094 [Aspergillus niger CBS 513.88]
 gi|134079418|emb|CAK40799.1| unnamed protein product [Aspergillus niger]
          Length = 228

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKREGI 225
           P+F + +   G+  A G   +K+ A+ +AA  V  R G+
Sbjct: 188 PKFRITISYKGIQ-ASGEGKTKKLAKHIAAKGVCHRLGL 225


>gi|156399642|ref|XP_001638610.1| predicted protein [Nematostella vectensis]
 gi|156225732|gb|EDO46547.1| predicted protein [Nematostella vectensis]
          Length = 411

 Score = 37.7 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 25/81 (30%), Gaps = 16/81 (19%)

Query: 156 DAKTELQEW----AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGL-------APAQGM 204
           D K   QE            +P Y +    GP     F   V I GL             
Sbjct: 329 DYKKS-QEILEDVCQKNQWGSPVYTLHSTLGPQEVQLFLYKVSIPGLATQYQPPKLC--- 384

Query: 205 DCSKRAAEQVAAAEVLKREGI 225
             +   A+  AA   L++ GI
Sbjct: 385 -RTVEEAKNYAAEHTLQQLGI 404


>gi|308485252|ref|XP_003104825.1| hypothetical protein CRE_23981 [Caenorhabditis remanei]
 gi|308257523|gb|EFP01476.1| hypothetical protein CRE_23981 [Caenorhabditis remanei]
          Length = 793

 Score = 37.7 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 1/56 (1%)

Query: 145 QRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP 200
           Q  +      ++  + + E    +    P +     SG DH   F   V I+ +  
Sbjct: 702 QNNVPVDLSSKNPISLIMELCAKRRWNAPSFSC-EESGADHMKMFIWTVAINNVEY 756


>gi|88769943|gb|ABD51459.1| H1L [Squirrel poxvirus]
          Length = 390

 Score = 37.7 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 2/56 (3%)

Query: 155 RDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRA 210
            +  + L E+            V  + GP H P F   V +SG         +K+ 
Sbjct: 316 MNPVSVLAEYCQHTRREWV--FVEQQQGPLHSPTFVAYVTVSGSRFPVERAHTKKE 369


>gi|319937668|ref|ZP_08012071.1| ribonuclease III family protein [Coprobacillus sp. 29_1]
 gi|319807103|gb|EFW03717.1| ribonuclease III family protein [Coprobacillus sp. 29_1]
          Length = 130

 Score = 37.7 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 19/118 (16%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI----- 97
           L +LGD +  + +   L    +  K   L       VSA+  +   +E  L  ++     
Sbjct: 11  LAYLGDGVFEVYVREYLIVDQEITKPDLLQKAAIQFVSAKAQAAFMKEAMLHEWVDEDEI 70

Query: 98  ---RVSSDLRKDVCSFMTSI----QADVVESLIAALYLDGG-------IEVAGTFVDK 141
              +   + +       TS+    Q+   E+LI  LYL           E+   FV +
Sbjct: 71  RIYKRGRNAKNTRVMKNTSVITHNQSSGFEALIGHLYLLKKEKRIQEIFELYKEFVMR 128


>gi|68477412|ref|XP_717177.1| possible dsRNA binding protein fragment [Candida albicans SC5314]
 gi|46438879|gb|EAK98203.1| possible dsRNA binding protein fragment [Candida albicans SC5314]
          Length = 389

 Score = 37.7 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            TPEY+   +  P+    + V+V   G+    G D +K+ A Q AA   L
Sbjct: 331 ATPEYE--DKISPE--KVYHVLVSAKGIYLGGGYDLNKKLAAQKAAMCAL 376


>gi|254966891|gb|ACT97467.1| HGI-1 beta-lactamase [uncultured organism]
          Length = 295

 Score = 37.7 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 34/106 (32%), Gaps = 21/106 (19%)

Query: 97  IRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRD 156
           I  S  L +   SF  S+   V    I A YL GG       V     Q+ L  G   +D
Sbjct: 172 ILASKGLEQSNVSFSDSLLLKVGNIKIEAYYLGGG-HTVDNIVVWIPSQKILFGGCMLKD 230

Query: 157 AKT----------ELQEWAH-----AKFGVTPEYKVTFRSGPDHDP 187
            +T           L+EW        +     EY +     P H  
Sbjct: 231 METLNIGNISDAAPLEEWLQTVDRVERQFPNVEYVI-----PGHGK 271


>gi|50306031|ref|XP_452977.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49642110|emb|CAH01828.1| KLLA0C17402p [Kluyveromyces lactis]
          Length = 241

 Score = 37.7 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 55/140 (39%), Gaps = 19/140 (13%)

Query: 21  SLLEKALTHSSISHSYQESYERLEFLGDRI---------LGLLISTLLFNHFDSAKE--- 68
            ++ + LTH S +   +   ++L  +G            LGL +S    +    ++    
Sbjct: 75  DIITQCLTHKSFAQGIKPYNQKLSIIGGHFVKYQACLHSLGLPVSERQLSQSVQSEPVIN 134

Query: 69  ----GELSVRFNS-LVSAETCSQVARELDLASFIRVSS-DLRKDVCSFMTS-IQADVVES 121
               G L    +  L+S ++ ++  +  +L   +  +  D +K         +   V+ S
Sbjct: 135 GLNFGMLGKGSSKMLISKQSTAEFLQRRNLDKLVFWNKRDTQKSHKYNGEYTVLQTVLNS 194

Query: 122 LIAALYLDGGIEVAGTFVDK 141
           ++ ++YL  G + A  +V  
Sbjct: 195 VVGSVYLLHGQDKATEYVLH 214


>gi|323387830|gb|ADX60058.1| tar RNA binding protein [Procambarus clarkii]
          Length = 59

 Score = 37.7 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFT 190
             + LQE    + G++P+Y +    G  H+P F 
Sbjct: 27  PVSLLQELC-MRRGISPKYDLLQIEGAVHEPTFV 59


>gi|238881365|gb|EEQ45003.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 673

 Score = 37.7 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            TPEY+   +  P+    + V+V   G+    G D +K+ A Q AA   L
Sbjct: 615 ATPEYE--DKISPE--KVYHVLVSAKGIYLGGGYDLNKKLAAQKAAMCAL 660


>gi|29293900|gb|AAO72963.1| RNA editing complex protein MP61 [Trypanosoma brucei]
 gi|261332582|emb|CBH15577.1| RNA editing complex protein MP61, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 538

 Score = 37.7 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 10/123 (8%)

Query: 11  KRIGY--AF-ANRSLLEKAL-TH-SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           +R+ Y   F  +R ++      H SS +      +ERLE++GD ++  + +      F  
Sbjct: 192 RRLQYLLKFLKDRDVIRDTFNVHNSSGAAGRSWEFERLEWIGDNVVKYVFNDRFNVIFPV 251

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
            + G       +    +    +AR      ++ +      D    ++  ++DVVE+L   
Sbjct: 252 REGGIRGRLGYAQFMIDGNDGLARAY---DYLELQKLTLSD--RVVSKFKSDVVETLFGE 306

Query: 126 LYL 128
           L L
Sbjct: 307 LQL 309


>gi|68476323|ref|XP_717811.1| hypothetical protein CaO19.5439 [Candida albicans SC5314]
 gi|68476512|ref|XP_717717.1| hypothetical protein CaO19.12894 [Candida albicans SC5314]
 gi|46439442|gb|EAK98760.1| hypothetical protein CaO19.12894 [Candida albicans SC5314]
 gi|46439543|gb|EAK98860.1| hypothetical protein CaO19.5439 [Candida albicans SC5314]
          Length = 778

 Score = 37.7 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 49/134 (36%), Gaps = 11/134 (8%)

Query: 21  SLLEKALTHSSISHSYQESY---ERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS 77
           S +  + +H   ++ Y +     + L+ LGD IL  +      N   +    + ++    
Sbjct: 611 SFIRLSFSHPFHNNKYPKVNYFKKSLDGLGDAILKRISCEYFMNVSKTDPTFKWNMDDIH 670

Query: 78  LVSAETC-SQVARELDLASFIRVSSDLRKDVCSFMTSI------QADVVESLIAALYLDG 130
            ++      ++A    L   I+            + S+        +  E+L++ LYLD 
Sbjct: 671 FINTNILFGRLAIAYRLHEGIQNEEYSAFIKNRLLGSLDSANVFLGNHFETLVSVLYLDS 730

Query: 131 GIEVAGTFVDKYWK 144
             E    ++ K + 
Sbjct: 731 -PETCTKWMFKVYD 743


>gi|16799349|ref|NP_469617.1| hypothetical protein lin0272 [Listeria innocua Clip11262]
 gi|16412701|emb|CAC95505.1| lin0272 [Listeria innocua Clip11262]
 gi|313620931|gb|EFR92104.1| ribonuclease III [Listeria innocua FSL S4-378]
 gi|313625380|gb|EFR95170.1| ribonuclease III [Listeria innocua FSL J1-023]
          Length = 136

 Score = 37.7 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 13/114 (11%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE-----TCSQVARELDLASFI 97
           L ++GD +    I   L       K  +L       VSA+       + +A         
Sbjct: 15  LAYMGDAVYEKFIREYLLAAG-KTKPNQLHKTATKFVSAKGQAVALKAMIAEGFLTDEED 73

Query: 98  RVSSDLRKDVCSFMTSI-------QADVVESLIAALYLDGGIEVAGTFVDKYWK 144
           R++   R      +           +   E+++  LYL G +E    +++K  +
Sbjct: 74  RIAKRGRNAKSYTIPKNTDPGTYSMSTSFEAVLGYLYLAGDMERLQEWMEKALE 127


>gi|253682273|ref|ZP_04863070.1| RNase3 domain protein [Clostridium botulinum D str. 1873]
 gi|253561985|gb|EES91437.1| RNase3 domain protein [Clostridium botulinum D str. 1873]
          Length = 137

 Score = 37.7 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 42/117 (35%), Gaps = 20/117 (17%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102
           L F+GD I  + +   L +        +L ++  S V A + S++ +E+     I V ++
Sbjct: 23  LAFIGDAIYEVFVRKYLVDEHRDMSAHKLHIKAVSFVKAHSQSELMKEI-----IEVLTE 77

Query: 103 LRKDVCSF---------------MTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
               +                       A   E+L+  LYL   ++     ++   K
Sbjct: 78  EECRIFKRGRNAKSGTVPRNADVREYRMATGFEALMGFLYLTNQLDRLNELMNIVIK 134


>gi|68477414|ref|XP_717178.1| possible dsRNA binding protein fragment [Candida albicans SC5314]
 gi|46438880|gb|EAK98204.1| possible dsRNA binding protein fragment [Candida albicans SC5314]
          Length = 295

 Score = 37.7 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 46/128 (35%), Gaps = 26/128 (20%)

Query: 22  LLEKALTHSSISHS-----------YQESYERLEFLGDRILGLLISTLLFNHFDSAKEGE 70
           LL + +T  S                +    RL   G  I+ L +  +L   +    + +
Sbjct: 160 LLLRIMTDRSYRQPSDFIESASNDYNKSHNGRLVLRGRAIMQLCLVEVLEESYPRLLDED 219

Query: 71  LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESL--IAALYL 128
           +    + L++    ++ A   +L   ++           +  S+ AD  E L  I  ++L
Sbjct: 220 IQFISHKLMAPIILTKFAFGYNLVDHLK-----------YNVSVDADYEEKLQIIGNIFL 268

Query: 129 D--GGIEV 134
              GG++ 
Sbjct: 269 AYMGGLKT 276


>gi|68477257|ref|XP_717255.1| possible dsRNA binding protein [Candida albicans SC5314]
 gi|46438959|gb|EAK98282.1| possible dsRNA binding protein [Candida albicans SC5314]
          Length = 673

 Score = 37.4 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 171 VTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
            TPEY+   +  P+    + V+V   G+    G D +K+ A Q AA   L
Sbjct: 615 ATPEYE--DKISPE--KVYHVLVSAKGIYLGGGYDLNKKLAAQKAAMCAL 660


>gi|228475263|ref|ZP_04059988.1| cysteine--tRNA ligase [Staphylococcus hominis SK119]
 gi|228270728|gb|EEK12137.1| cysteine--tRNA ligase [Staphylococcus hominis SK119]
          Length = 129

 Score = 37.4 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 13/114 (11%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQ-----VAREL---DLA 94
           L ++GD +L   +   +      +K   L       VSA++ +Q     + +E    +  
Sbjct: 11  LAYMGDAVLDQHVREYIVLKL-QSKPNRLHQVSKQYVSAKSQAQTLEVLITKEWFTEEER 69

Query: 95  SFIRVSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGIEVAGTFVDKYWK 144
             +R   + +    +  T IQ    +  +E++I  LYLD   E     +D   +
Sbjct: 70  DIVRRGRNAKSYTKAKNTDIQTYRKSSGLEAIIGFLYLDHRNERLDALLDMIVQ 123


>gi|119625638|gb|EAX05233.1| testis nuclear RNA-binding protein, isoform CRA_c [Homo sapiens]
          Length = 578

 Score = 37.4 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 3/86 (3%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDH--DPRFTVVVEISG 197
            K  K+  +K  +   +  + L ++A  +  V  + K T  +G  +   P F     + G
Sbjct: 80  KKIPKEFIMKYKRGEINPVSALHQFAQMQ-RVQLDLKETVTTGKCNVMGPYFAFCAVVDG 138

Query: 198 LAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +    G+  +K+ +   AA   L   
Sbjct: 139 IQYKTGLGQNKKESRSNAAKLALDEL 164


>gi|114599995|ref|XP_001146638.1| PREDICTED: similar to endoribonuclease Dicer [Pan troglodytes]
          Length = 84

 Score = 37.4 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 24/72 (33%), Gaps = 7/72 (9%)

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           S         EL E        +P  +              V +E++G    +G+  S R
Sbjct: 8   SANVPHSPVRELLEMEPETTKFSPAVRTYEEK-------VRVTMEVAGQEKFKGVGRSNR 60

Query: 210 AAEQVAAAEVLK 221
            A+  AA   L+
Sbjct: 61  IAKSAAARRALR 72


>gi|308501339|ref|XP_003112854.1| CRE-RDE-4 protein [Caenorhabditis remanei]
 gi|308265155|gb|EFP09108.1| CRE-RDE-4 protein [Caenorhabditis remanei]
          Length = 393

 Score = 37.4 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 33/100 (33%), Gaps = 15/100 (15%)

Query: 128 LDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDP 187
           +D  I     F         +  G   ++    LQE         P Y          + 
Sbjct: 159 VDKSIPTVKEF------PPNVDGG---KNWVGALQEKCQKLKLEGPGYDDCKIE---SNS 206

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK--REGI 225
           +F V   +      +G+    + A+ +AA  +LK   EGI
Sbjct: 207 QFMVTCSMKNQK-TRGIKPKIKHAKNLAAWLMLKSLEEGI 245


>gi|261334844|emb|CBH17838.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 486

 Score = 37.4 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 42/107 (39%), Gaps = 11/107 (10%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD------SAKEGELSVRFNSLVSA 81
           T SS       +++R+E +GD   G  +   +   F       ++    +      L   
Sbjct: 198 TASSGGLQRDAAFQRMECIGDHNWGHSVCRRIVLLFPEVNWRANSNVLVMDALRTVLECN 257

Query: 82  ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           +    V   L L+   ++     +DV       +AD+VE++I  L++
Sbjct: 258 QHLVHVFTLLQLSD--KLGG---RDVKEKSVKFKADIVEAIIGELHV 299


>gi|148912911|ref|YP_001293225.1| hypothetical protein GTPV_gp030 [Goatpox virus Pellor]
          Length = 177

 Score = 37.4 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 2/61 (3%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            ++  + + E+          Y      G    P F   V ISG+     +  +K+ A+Q
Sbjct: 102 EKNPCSAINEYCQFTSRD--WYINISSCGNGRKPMFLASVIISGIKFFPEIGNTKKEAKQ 159

Query: 214 V 214
            
Sbjct: 160 K 160


>gi|15150473|ref|NP_150468.1| LSDV034 putative PKR inhibitor [Lumpy skin disease virus NI-2490]
 gi|15149045|gb|AAK84995.1| LSDV034 putative PKR inhibitor [Lumpy skin disease virus NI-2490]
 gi|22595569|gb|AAN02602.1| putative PKR inhibitor [Lumpy skin disease virus NW-LW]
          Length = 177

 Score = 37.4 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 2/61 (3%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            ++  + + E+          Y      G    P F   V ISG+     +  +K+ A+Q
Sbjct: 102 EKNPCSAINEYCQFTSRD--WYINISSCGNGRKPMFLASVIISGIKFFPEIGNTKKEAKQ 159

Query: 214 V 214
            
Sbjct: 160 K 160


>gi|22595727|gb|AAN02759.1| putative PKR inhibitor [lumpy skin disease virus]
          Length = 177

 Score = 37.4 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 2/61 (3%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            ++  + + E+          Y      G    P F   V ISG+     +  +K+ A+Q
Sbjct: 102 EKNPCSAINEYCQFTSRD--WYINISSCGNGRKPMFLASVIISGIKFFPEIGNTKKEAKQ 159

Query: 214 V 214
            
Sbjct: 160 K 160


>gi|21492487|ref|NP_659606.1| dsRNA-binding PKR inhibitor [Sheeppox virus]
          Length = 177

 Score = 37.4 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 2/61 (3%)

Query: 154 RRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQ 213
            ++  + + E+          Y      G    P F   V ISG+     +  +K+ A+Q
Sbjct: 102 EKNPCSAINEYCQFTSRD--WYINISSCGNGRKPMFLASVIISGIKFFPEIGNTKKEAKQ 159

Query: 214 V 214
            
Sbjct: 160 K 160


>gi|71755999|ref|XP_828914.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|70834300|gb|EAN79802.1| hypothetical protein, conserved [Trypanosoma brucei]
          Length = 486

 Score = 37.4 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 42/107 (39%), Gaps = 11/107 (10%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFD------SAKEGELSVRFNSLVSA 81
           T SS       +++R+E +GD   G  +   +   F       ++    +      L   
Sbjct: 198 TASSGGLQRDAAFQRMECIGDHNWGHSVCRRIVLLFPEVNWRANSNVLVMDALRTVLECN 257

Query: 82  ETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
           +    V   L L+   ++     +DV       +AD+VE++I  L++
Sbjct: 258 QHLVHVFTLLQLSD--KLGG---RDVKEKSVKFKADIVEAIIGELHV 299


>gi|170043311|ref|XP_001849336.1| ribonuclease iii [Culex quinquefasciatus]
 gi|167866692|gb|EDS30075.1| ribonuclease iii [Culex quinquefasciatus]
          Length = 172

 Score = 37.4 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 17/51 (33%)

Query: 172 TPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
            P  KV   + P       +     G   A     S + AE  AA + L+ 
Sbjct: 64  IPICKVIECNSPTSTRVCMMADYFRGKRLACSNGHSTQQAEMNAAKQALEN 114


>gi|330845737|ref|XP_003294729.1| hypothetical protein DICPUDRAFT_93274 [Dictyostelium purpureum]
 gi|325074759|gb|EGC28750.1| hypothetical protein DICPUDRAFT_93274 [Dictyostelium purpureum]
          Length = 235

 Score = 37.4 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 47/123 (38%), Gaps = 7/123 (5%)

Query: 24  EKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV-SAE 82
            ++LT  S     +   ++L + GD  L   I+  L           +   F  LV S  
Sbjct: 2   IQSLTQCS-EKQTKADQDKLFYFGDLTLRHSINNPLELSLADK---AIYKEFEELVQSEF 57

Query: 83  TCSQVARELDLASFIRVS--SDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVD 140
                  E+ L+ FIR S  ++ +     +  +     +   I ALYL+ G +V   F+ 
Sbjct: 58  FLKSRCEEIGLSDFIRFSYPNNWKDYKQIYANNNYYKCLIKFIGALYLEFGFKVTHQFIH 117

Query: 141 KYW 143
           +  
Sbjct: 118 RVI 120


>gi|297799970|ref|XP_002867869.1| hypothetical protein ARALYDRAFT_492795 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297313705|gb|EFH44128.1| hypothetical protein ARALYDRAFT_492795 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 943

 Score = 37.4 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 18/77 (23%)

Query: 164 WAHAKFGVTPEYKVTF---------------RSGPDHDPRFTVVVEISGLAPAQGMDCSK 208
             H KFG    Y+V                 + GP     +   +++   +    +   K
Sbjct: 14  IIHQKFGAKASYRVEEVNDSSQSGCPGLAIPQKGPC---LYRCHLQLPDFSVVSNVFKKK 70

Query: 209 RAAEQVAAAEVLKREGI 225
           + +EQ AA   L++ GI
Sbjct: 71  KDSEQSAAELALEKLGI 87


>gi|301103430|ref|XP_002900801.1| double stranded RNA binding, putative [Phytophthora infestans
           T30-4]
 gi|262101556|gb|EEY59608.1| double stranded RNA binding, putative [Phytophthora infestans
           T30-4]
          Length = 306

 Score = 37.4 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 5/58 (8%)

Query: 158 KTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAE 212
           KT    LQE+ +   GV+  Y      G D    F  +   +G    +G+  +K+ A+
Sbjct: 22  KTPAQVLQEYQNRNRGVSINYNTIPVEG-DGIKLFKTIAT-AGSTVGEGVASTKKIAK 77


>gi|115729155|ref|XP_001198817.1| PREDICTED: similar to dynein heavy chain, partial
           [Strongylocentrotus purpuratus]
 gi|115893677|ref|XP_781502.2| PREDICTED: similar to dynein heavy chain, partial
           [Strongylocentrotus purpuratus]
          Length = 992

 Score = 37.4 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 17/87 (19%)

Query: 2   SALRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQ---ESYERLE----------FLGD 48
             ++   L +++G    +  L ++A T  S   +++     YE LE           L D
Sbjct: 381 DKIKVKNLLQKLGTTLND--LQKQAFTFKSYQKNFKVEVTKYEELEETHAELKLKQLLWD 438

Query: 49  RI--LGLLISTLLFNHFDSAKEGELSV 73
            +    ++ +      F+     +LS 
Sbjct: 439 SLDEWDVMTTEWTDADFNDLDPEDLSA 465


>gi|322702818|gb|EFY94442.1| hypothetical protein MAA_10119 [Metarhizium anisopliae ARSEF 23]
          Length = 251

 Score = 37.4 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 47/149 (31%), Gaps = 23/149 (15%)

Query: 21  SLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRF----- 75
            L   A+TH S     +   ++L  LG   L +  +  + +          +  F     
Sbjct: 100 ELKWLAVTHKSFDQGRRGFNDKLALLGRLTLVMEATKEIVSKAP-LPGSRQTDEFDRVPF 158

Query: 76  ----------------NSLVSAETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQADV 118
                             +VS E    +A +  +   +R    L K    S +  +    
Sbjct: 159 EHEQLASVDNLSVEEPKDMVSKEKLFALASDAGILDVLRWKPRLPKSLESSGVEVVVNSA 218

Query: 119 VESLIAALYLDGGIEVAGTFVDKYWKQRA 147
           V +++ A+ L  G  VA   V +    R 
Sbjct: 219 VLAILGAITLQHGSVVASKVVRERILARL 247


>gi|261199119|ref|XP_002625961.1| conserved hypothetical protein [Ajellomyces dermatitidis SLH14081]
 gi|239595113|gb|EEQ77694.1| conserved hypothetical protein [Ajellomyces dermatitidis SLH14081]
          Length = 405

 Score = 37.4 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 13/65 (20%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK--R---AAEQVA 215
           LQE+        P Y     +   H+  F   VE+ G++       +K  +    A   +
Sbjct: 61  LQEYCQQNKLDRPIY-----TKYAHEEGFRYEVEVGGVSCF---GANKFYKTATEAIHAS 112

Query: 216 AAEVL 220
           A   L
Sbjct: 113 AHAAL 117


>gi|260946561|ref|XP_002617578.1| hypothetical protein CLUG_03022 [Clavispora lusitaniae ATCC 42720]
 gi|238849432|gb|EEQ38896.1| hypothetical protein CLUG_03022 [Clavispora lusitaniae ATCC 42720]
          Length = 211

 Score = 37.4 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 48/128 (37%), Gaps = 12/128 (9%)

Query: 25  KALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGEL---------SVRF 75
           + LTH S ++  +   E+L  +G ++L L ++  +     +  E  +         S   
Sbjct: 67  QVLTHKSFANGIKPYNEKLSAMGAKVLNLFLAKHVVE-GPTTNELAVAGKNLDVLGSPMA 125

Query: 76  NSLVSAETCSQVARELDLAS--FIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIE 133
             L         A+   L S  F +  +       S    + A V+ +L+ A+    G +
Sbjct: 126 KELSGRMALGVFAQSSKLNSVMFWKSYNSSLSFEKSGELKVSAQVMYALVGAVAFAHGKK 185

Query: 134 VAGTFVDK 141
            A  F+ +
Sbjct: 186 KAEEFIRE 193


>gi|313224320|emb|CBY20109.1| unnamed protein product [Oikopleura dioica]
          Length = 348

 Score = 37.4 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 6/76 (7%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ-GMDCS 207
           +S     +  ++L E+   +    P +      G     +F +   I+ L     GM  S
Sbjct: 121 ESDDNFDNPTSKLFEFVQIRGIEKPVFW-DDMYG----TQFKMTCTIASLKLESFGMCSS 175

Query: 208 KRAAEQVAAAEVLKRE 223
           K+ A++ A   +L++ 
Sbjct: 176 KKQAKREACRHMLEKL 191


>gi|300176875|emb|CBK25444.2| unnamed protein product [Blastocystis hominis]
          Length = 172

 Score = 37.4 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 3/77 (3%)

Query: 109 SFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK---QRALKSGKFRRDAKTELQEWA 165
                + +D++ES  A+L+LDGG+       D+ +    ++ L  G  + +  + + E  
Sbjct: 48  RSKPKLLSDLLESTTASLFLDGGMPKCEELFDRLFGDDVEKRLVDGTLQFEVISAIPEIL 107

Query: 166 HAKFGVTPEYKVTFRSG 182
           +A        ++T  +G
Sbjct: 108 NALGAEERLLQITEEAG 124


>gi|281343287|gb|EFB18871.1| hypothetical protein PANDA_013094 [Ailuropoda melanoleuca]
          Length = 584

 Score = 37.4 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 6/90 (6%)

Query: 140 DKYWKQRALKSGKFRRDAKTELQEWAHAK--FGVTPEYKVTF----RSGPDHDPRFTVVV 193
            K  K+  +K  +   +  + L ++A  +       E   T      SG    P F    
Sbjct: 80  KKIPKEFIMKYKRGEINPVSALHQFAQMQRVHLDLKETVTTGKSKVISGNVMGPYFAFCA 139

Query: 194 EISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            + G+    G+  +K+ +   AA   L   
Sbjct: 140 VVDGIQYKTGLGQNKKESRSNAAKLALDEL 169


>gi|325090640|gb|EGC43950.1| conserved hypothetical protein [Ajellomyces capsulatus H88]
          Length = 101

 Score = 37.4 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 6/88 (6%)

Query: 8  TLEKRIGYAFANRSLLEKAL-THSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSA 66
           +EK  GY F N SL  KAL T    +   Q+S   L  +GD  L L + T+ +     A
Sbjct: 14 EIEKATGYTFTNPSLCLKALQTAGCAAAGGQKS---LAQVGDAALRLALVTIGYGK--GA 68

Query: 67 KEGELSVRFNSLVSAETCSQVARELDLA 94
            G++     +  S    +    E    
Sbjct: 69 SRGQIDSALRTKASNSHLADQGFERGFD 96


>gi|221120135|ref|XP_002163130.1| PREDICTED: hypothetical protein [Hydra magnipapillata]
 gi|221136244|ref|XP_002171265.1| PREDICTED: hypothetical protein [Hydra magnipapillata]
          Length = 179

 Score = 37.4 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 9/90 (10%)

Query: 139 VDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRS--GPDHDPRFTVVVEIS 196
           +   +   + K    R D  + LQ          PEYK    S  G      F     + 
Sbjct: 25  IKAAYPLASEKMLAERVDYTSLLQIVCQKVKWNLPEYKECTSSLGG------FGYQCRVG 78

Query: 197 GLAP-AQGMDCSKRAAEQVAAAEVLKREGI 225
                ++  + +K+ A+  AA   L    I
Sbjct: 79  LKWYESKEFNSTKKDAKHNAAKWALLELDI 108


>gi|328726844|ref|XP_003249070.1| PREDICTED: double-stranded RNA-specific editase 1-like
           [Acyrthosiphon pisum]
          Length = 372

 Score = 37.4 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           + V +SG     G   SK+ A+++A    LK
Sbjct: 149 ISVIVSGNKY-IGYGKSKKEAKEIACRNALK 178


>gi|255723528|ref|XP_002546697.1| predicted protein [Candida tropicalis MYA-3404]
 gi|240130571|gb|EER30135.1| predicted protein [Candida tropicalis MYA-3404]
          Length = 829

 Score = 37.4 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 37/117 (31%), Gaps = 8/117 (6%)

Query: 46  LGDRILGLLISTLLFNHFDSAKEGELS-VRFNSLVSAETCSQVARELDLASFIRVSSDL- 103
           LGD IL    +           +   +    + + S    S++A    L   I+      
Sbjct: 690 LGDAILKKYSAEYFIQLEQIEPQFVWNMDDIHFINSNILFSKLAISYKLHRAIQCEKHAN 749

Query: 104 ----RKDVCSFMTSI-QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRR 155
               R +      ++   D+ E L+A  YLD   +    +V   +    L      +
Sbjct: 750 GLRTRLEGSFDRANVLLGDMFERLVAIEYLD-DPDKCRKWVFAIYDSIRLSLTAEHK 805


>gi|324505424|gb|ADY42332.1| Double-stranded RNA-specific editase B2 [Ascaris suum]
          Length = 863

 Score = 37.4 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           PRF     + G         SK+ A+Q+A    LK
Sbjct: 150 PRFVCKFSVQGKE-FSADASSKKIAKQLACERALK 183


>gi|302807261|ref|XP_002985343.1| hypothetical protein SELMODRAFT_446247 [Selaginella moellendorffii]
 gi|300146806|gb|EFJ13473.1| hypothetical protein SELMODRAFT_446247 [Selaginella moellendorffii]
          Length = 1142

 Score = 37.4 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 7/60 (11%)

Query: 156  DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQV 214
            D K  LQ          P Y+ T  SG     +F   V + G     G    SK+ AE+ 
Sbjct: 1064 DTKGILQTLVQRAGFAVPTYQ-TRSSG----SQFISCVVVRGKK-FIGEPAESKKQAEKN 1117


>gi|225683515|gb|EEH21799.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
          Length = 322

 Score = 37.4 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 47/132 (35%), Gaps = 21/132 (15%)

Query: 28  THSSISHSYQESYERLEFLGDRILGLLISTLLFN------------------HFDSAKEG 69
           TH S     +   ERL +LG +I+ L  S  L                       S +  
Sbjct: 175 THKSFDQGRRGFNERLSYLGKQIVQLQASLSLLESASTSSPKQEDPYGRAPFDHPSLQGL 234

Query: 70  E--LSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKD-VCSFMTSIQADVVESLIAAL 126
           E       N  ++    +Q+A +  L   +R     R D V S +  +    + +++ A+
Sbjct: 235 EVLTQDNKNMKLNRTKIAQLAHQYKLEEVLRWVPRYRNDLVESGLEVVLTQAIYAVVGAV 294

Query: 127 YLDGGIEVAGTF 138
            L+ G  VA   
Sbjct: 295 ALEKGGVVANQV 306


>gi|302795757|ref|XP_002979641.1| hypothetical protein SELMODRAFT_419303 [Selaginella moellendorffii]
 gi|300152401|gb|EFJ19043.1| hypothetical protein SELMODRAFT_419303 [Selaginella moellendorffii]
          Length = 1665

 Score = 37.0 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 7/60 (11%)

Query: 156  DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRAAEQV 214
            D K  LQ          P Y+ T  SG     +F   V + G     G    SK+ AE+ 
Sbjct: 947  DTKGILQTLVQRAGFAVPTYQ-TRSSG----SQFISCVVVRGKK-FIGEPAESKKQAEKN 1000


>gi|313222343|emb|CBY39288.1| unnamed protein product [Oikopleura dioica]
          Length = 826

 Score = 37.0 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 7/75 (9%)

Query: 150 SGKFRRDAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206
           +G    DAKT    L E    KF    +++ +     D+   F + +  +     +G   
Sbjct: 222 TGISTHDAKTPTSHLFE----KFKSGVDFQFSDTIRDDNTGLFVIQLGFTDGVMFEGYGR 277

Query: 207 SKRAAEQVAAAEVLK 221
           +K+ A+  A A  L+
Sbjct: 278 NKKLAKHHACAVALE 292


>gi|321466229|gb|EFX77226.1| hypothetical protein DAPPUDRAFT_321627 [Daphnia pulex]
          Length = 199

 Score = 37.0 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 19/57 (33%), Gaps = 1/57 (1%)

Query: 167 AKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
            K  + P Y      G      F +           G   + R A+ VAA E+L + 
Sbjct: 137 RKKHLAPIYYCLQVEGTGPSLTFAMSCH-HPKFVTIGEGRTIRMAKNVAAQEMLMKL 192


>gi|313224856|emb|CBY20648.1| unnamed protein product [Oikopleura dioica]
          Length = 808

 Score = 37.0 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 7/75 (9%)

Query: 150 SGKFRRDAKTE---LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206
           +G    DAKT    L E    KF    +++ +     D+   F + +  +     +G   
Sbjct: 206 TGISTHDAKTPTSHLFE----KFKSGVDFQFSDTIRDDNTGLFVIQLGFTDGVMFEGYGR 261

Query: 207 SKRAAEQVAAAEVLK 221
           +K+ A+  A A  L+
Sbjct: 262 NKKLAKHHACAVALE 276


>gi|242044684|ref|XP_002460213.1| hypothetical protein SORBIDRAFT_02g024705 [Sorghum bicolor]
 gi|241923590|gb|EER96734.1| hypothetical protein SORBIDRAFT_02g024705 [Sorghum bicolor]
          Length = 172

 Score = 37.0 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 24/68 (35%), Gaps = 8/68 (11%)

Query: 160 ELQEWAHAKFGVTPEYKVTFRSGPDHDPRF--TVVVEISGLAPAQGMDCS-----KRAAE 212
            L +         P++      GP H+  F   V V + GL        S     K+AA 
Sbjct: 95  RLLKICKVIGWKEPQFDF-EEQGPQHNKTFKCKVTVHLDGLLNTIMECFSKPNPRKKAAR 153

Query: 213 QVAAAEVL 220
           + AA   L
Sbjct: 154 ENAAQGAL 161


>gi|242372748|ref|ZP_04818322.1| ribonuclease III [Staphylococcus epidermidis M23864:W1]
 gi|242349521|gb|EES41122.1| ribonuclease III [Staphylococcus epidermidis M23864:W1]
          Length = 129

 Score = 37.0 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 42/114 (36%), Gaps = 13/114 (11%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL--------DLA 94
           L ++GD +L   I   +      +K   L       VSA++ +Q    L        +  
Sbjct: 12  LAYMGDAVLDQHIREYIVLKL-QSKPNRLHQVSKQYVSAKSQAQTLERLISDDWFTEEEL 70

Query: 95  SFIRVSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGIEVAGTFVDKYWK 144
           + ++   + +    +  T IQ    +  +E++I  LYLD         +    +
Sbjct: 71  NVLKRGRNAKSYTKAKNTDIQTYRKSSALEAVIGFLYLDHQQTRLEELLHNIVE 124


>gi|239636928|ref|ZP_04677926.1| cysteinyl-tRNA synthetase [Staphylococcus warneri L37603]
 gi|239597476|gb|EEQ79975.1| cysteinyl-tRNA synthetase [Staphylococcus warneri L37603]
          Length = 132

 Score = 37.0 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 43/114 (37%), Gaps = 13/114 (11%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL--------DLA 94
           L ++GD +L   +   +     S     L       VSA++ +Q    L        +  
Sbjct: 14  LAYMGDAVLDQHVREYIVLKLRSKP-NRLHQMSKLYVSAKSQAQTLETLIGEAWFTEEEM 72

Query: 95  SFIRVSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGIEVAGTFVDKYWK 144
             ++   + +    +  T +Q    +  +E++I  LYL+   E     ++K  +
Sbjct: 73  DILKRGRNAKSYTKAKNTDVQTYRKSSALEAVIGFLYLEHREERLKALLNKIIE 126


>gi|149511238|ref|XP_001519380.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 268

 Score = 37.0 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 187 PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
             F V + +       G   +++AA   AA + L+  
Sbjct: 106 KIFYVQLTVGNDEFF-GEGKTRQAARHNAAMKALRAL 141


>gi|313243436|emb|CBY42194.1| unnamed protein product [Oikopleura dioica]
          Length = 723

 Score = 37.0 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 14/34 (41%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            +   V       A G   +K+ A+  AA+  L+
Sbjct: 502 TWEATVSFDKTKIADGHGKTKKDAKADAASNALR 535


>gi|313231812|emb|CBY08924.1| unnamed protein product [Oikopleura dioica]
          Length = 672

 Score = 37.0 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 14/34 (41%)

Query: 188 RFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
            +   V       A G   +K+ A+  AA+  L+
Sbjct: 451 TWEATVSFDKTKIADGHGKTKKDAKADAASNALR 484


>gi|297742898|emb|CBI35689.3| unnamed protein product [Vitis vinifera]
          Length = 160

 Score = 37.0 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 13/30 (43%)

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             VEI G    +G   +   A+  AA + L
Sbjct: 78  AQVEIDGQVLGKGTGSTWDDAKMQAAEKAL 107


>gi|311273132|ref|XP_001926172.2| PREDICTED: 39S ribosomal protein L44, mitochondrial-like [Sus
           scrofa]
          Length = 118

 Score = 37.0 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 1/89 (1%)

Query: 136 GTFVDKYWKQRALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVE 194
             F+      + L       +    L E    +    PE ++T +SG     P + V + 
Sbjct: 2   QDFLITQMTGKELFEMWTITNPMGLLVEELKKRKISAPESRLTRQSGSTTALPVYFVGLY 61

Query: 195 ISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
                 A+G   +   AE+ AA   L++ 
Sbjct: 62  CDRKLIAEGPGETVLVAEEEAARVALRKL 90


>gi|317156819|ref|XP_001826034.2| hypothetical protein AOR_1_658054 [Aspergillus oryzae RIB40]
          Length = 216

 Score = 37.0 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 6/78 (7%)

Query: 150 SGKFRRDAK-T-ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            G    + K T  L E A          KVT     +   RF + ++  G+  A G   +
Sbjct: 139 PGSEADNWKYTCRLWEDAQGTGEEP---KVTEACISNFPTRFRITIQYCGVE-ASGEGRN 194

Query: 208 KRAAEQVAAAEVLKREGI 225
           K+ A  +AA  V +R  +
Sbjct: 195 KKTARHLAARRVCERLNL 212


>gi|238492893|ref|XP_002377683.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
 gi|220696177|gb|EED52519.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
          Length = 247

 Score = 37.0 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 6/78 (7%)

Query: 150 SGKFRRDAK-T-ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            G    + K T  L E A          KVT     +   RF + ++  G+  A G   +
Sbjct: 170 PGSEADNWKYTCRLWEDAQGTGEEP---KVTEACISNFPTRFRITIQYCGVE-ASGEGRN 225

Query: 208 KRAAEQVAAAEVLKREGI 225
           K+ A  +AA  V +R  +
Sbjct: 226 KKTARHLAARRVCERLNL 243


>gi|83774778|dbj|BAE64901.1| unnamed protein product [Aspergillus oryzae]
          Length = 250

 Score = 37.0 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 6/78 (7%)

Query: 150 SGKFRRDAK-T-ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
            G    + K T  L E A          KVT     +   RF + ++  G+  A G   +
Sbjct: 170 PGSEADNWKYTCRLWEDAQGTGEEP---KVTEACISNFPTRFRITIQYCGVE-ASGEGRN 225

Query: 208 KRAAEQVAAAEVLKREGI 225
           K+ A  +AA  V +R  +
Sbjct: 226 KKTARHLAARRVCERLNL 243


>gi|71747466|ref|XP_822788.1| RNA editing complex protein MP61 [Trypanosoma brucei TREU927]
 gi|70832456|gb|EAN77960.1| RNA editing complex protein MP61 [Trypanosoma brucei]
          Length = 538

 Score = 37.0 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 10/123 (8%)

Query: 11  KRIGY--AF-ANRSLLEKAL-TH-SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDS 65
           +R+ Y   F  +R ++      H SS +      +ERLE++GD ++  + +      F  
Sbjct: 192 RRLQYLLKFLKDRDVIRDTFNVHNSSGTAGRSWEFERLEWIGDNVVKYVFNDRFNVIFPV 251

Query: 66  AKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAA 125
            + G       +    +    +AR      ++ +      D    ++  ++DVVE+L   
Sbjct: 252 REGGIRGRLGYAQFMIDGNDGLARAY---DYLELQKLTLSD--RVVSKFKSDVVETLFGE 306

Query: 126 LYL 128
           L L
Sbjct: 307 LQL 309


>gi|168187714|ref|ZP_02622349.1| ribonuclease III family protein [Clostridium botulinum C str.
           Eklund]
 gi|169294419|gb|EDS76552.1| ribonuclease III family protein [Clostridium botulinum C str.
           Eklund]
          Length = 137

 Score = 37.0 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 10/108 (9%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELD---LASFIRV 99
           L F+GD I  + +   L    +     +L V+  S V A + S++ +E+         R+
Sbjct: 23  LAFVGDAIYEVFVRQYLVEQNNDMSAHKLHVKAVSYVKAHSQSEIMKEIKEILTDEEERI 82

Query: 100 SSDLRKDVCSFMTSI-------QADVVESLIAALYLDGGIEVAGTFVD 140
               R      +           A   E+L+  LYL   ++     ++
Sbjct: 83  FKRGRNAKSGTVPKNADVREYRIATGFEALMGFLYLTNQLDRLNELMN 130


>gi|302849039|ref|XP_002956050.1| hypothetical protein VOLCADRAFT_96996 [Volvox carteri f.
           nagariensis]
 gi|300258555|gb|EFJ42790.1| hypothetical protein VOLCADRAFT_96996 [Volvox carteri f.
           nagariensis]
          Length = 1239

 Score = 37.0 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 14/77 (18%)

Query: 157 AKTELQEWAHAKFGVTPEYKVTFRS---GPDHDPRFTVVVEI--SG-----LAPAQGMDC 206
            KT L      ++     Y+VT      GP     +TV   +   G     +A A G   
Sbjct: 617 PKTPL--MILHEYASKMSYEVTNHETSDGPSGP--YTVETRMLSGGNRGTTIATASGKAR 672

Query: 207 SKRAAEQVAAAEVLKRE 223
           +K+ A+QV+AA VL++ 
Sbjct: 673 TKKDAKQVSAAAVLEKL 689


>gi|256844497|ref|ZP_05549983.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN]
 gi|256613575|gb|EEU18778.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN]
          Length = 147

 Score = 37.0 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 48/137 (35%), Gaps = 14/137 (10%)

Query: 34  HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL 93
           +    + + L +LGD +  L+I   L       K   L       VSA+  + +A ++  
Sbjct: 13  NPDTLNGQTLAYLGDAVYELIIRRHLV-KGGIVKPQVLQREATHYVSAKAQAALATKMQD 71

Query: 94  ASFI--------RVSSDLRKDVCSFMTSI----QADVVESLIAALYLDGGIEVAGTFVDK 141
              +        R   + +    +  TS+     +   E++I  L L G  +     + K
Sbjct: 72  EEMLTDDELAAFRRGRNAKSHTKAKNTSLKTYQLSTGFEAMIGYLDLLGKNDRVAD-LSK 130

Query: 142 YWKQRALKSGKFRRDAK 158
           +      + G    D K
Sbjct: 131 WCIDTVEEDGLKNYDFK 147


>gi|295087382|emb|CBK68905.1| TIR domain. [Bacteroides xylanisolvens XB1A]
          Length = 655

 Score = 36.6 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 19/107 (17%)

Query: 82  ETCSQVAREL--DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL------YLDGGIE 133
            + S + +E+  ++ + I +   +            A + E  I A+      YL GG  
Sbjct: 506 NSLSIMRKEMEENVNARIVLGGKIVNFKGR-----MAGIFEEAICAIQKKHPIYLLGGFG 560

Query: 134 VAGTFVDKYWK-----QRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
            A   + K  K     ++  +  K   D K +L E+       T  Y
Sbjct: 561 GASAQIVKLMKGETTAEKLFEEAKTNEDYK-KLIEYCQMSCLPTINY 606


>gi|154249387|ref|YP_001410212.1| ribonuclease III [Fervidobacterium nodosum Rt17-B1]
 gi|154153323|gb|ABS60555.1| ribonuclease III [Fervidobacterium nodosum Rt17-B1]
          Length = 127

 Score = 36.6 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 13/104 (12%)

Query: 34  HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL-- 91
           +  + S + L +LGD +  L     +       K  +L  R N  VS +  S++ + +  
Sbjct: 10  NPDEMSIDSLAYLGDAVFNLYAKLYILA---DVKVTDLHRRSNKYVSRQGQSKLLKSISH 66

Query: 92  -------DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
                  ++      S   RK   +    +++   E+LI  LYL
Sbjct: 67  LLDEKEKNVVQRGINSKGARKH-GNDRLYMESTGFEALIGYLYL 109


>gi|330797669|ref|XP_003286881.1| hypothetical protein DICPUDRAFT_150900 [Dictyostelium purpureum]
 gi|325083116|gb|EGC36577.1| hypothetical protein DICPUDRAFT_150900 [Dictyostelium purpureum]
          Length = 790

 Score = 36.6 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 20/66 (30%)

Query: 156 DAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
             K  LQ        + PE++     GPDH   F                   R +E+  
Sbjct: 7   HYKGLLQTHFQKARLIYPEFR-NETRGPDHQKEF-------------------RKSEEEC 46

Query: 216 AAEVLK 221
           A + ++
Sbjct: 47  AKKTME 52


>gi|314937164|ref|ZP_07844511.1| cysteine--tRNA ligase [Staphylococcus hominis subsp. hominis C80]
 gi|313655783|gb|EFS19528.1| cysteine--tRNA ligase [Staphylococcus hominis subsp. hominis C80]
          Length = 129

 Score = 36.6 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 43/114 (37%), Gaps = 13/114 (11%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL--------DLA 94
           L ++GD +L   +   +      +K   L       VSA++ +Q    L        +  
Sbjct: 11  LAYMGDAVLDQHVREYIVLKL-QSKPNRLHQVSKQYVSAKSQAQTLEVLITKKWFTEEER 69

Query: 95  SFIRVSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGIEVAGTFVDKYWK 144
             +R   + +    +  T +Q    +  +E++I  LYLD   E     +D   +
Sbjct: 70  DIVRRGRNAKSYTKAKNTDVQTYRKSSGLEAIIGFLYLDHRNERLDALLDMIVQ 123


>gi|111025588|ref|YP_708008.1| hypothetical protein RHA1_ro08806 [Rhodococcus jostii RHA1]
 gi|110824567|gb|ABG99850.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 150

 Score = 36.6 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 19/52 (36%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           W  A     P      R+G DH+P F        +        +K+ AEQ A
Sbjct: 43  WRQAHPDQPPTDLEIRRNGADHNPLFAARATHLNIRGPWATAAAKKPAEQAA 94


>gi|47213373|emb|CAF90992.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 611

 Score = 36.6 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 15/79 (18%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI-------SGLAPAQGMDCSK----- 208
           L+E         P Y++    GPD    F   + I         + P      +K     
Sbjct: 465 LEELCQKNNWGQPVYQLHSAIGPDQRQLFLYKITIPALATQYPNVHPFT---PTKLCAAV 521

Query: 209 RAAEQVAAAEVLKREGIWT 227
             A+  AA   L+  G+ T
Sbjct: 522 EEAKVHAAEHTLQTLGLLT 540


>gi|308198005|ref|XP_001386774.2| predicted protein [Scheffersomyces stipitis CBS 6054]
 gi|149388810|gb|EAZ62751.2| predicted protein [Pichia stipitis CBS 6054]
          Length = 541

 Score = 36.6 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 28/63 (44%)

Query: 30  SSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAR 89
            S S S  +  E L+ LG  ++   I+ +    F++  +  +    + L S    S+  R
Sbjct: 241 KSCSESISKKSENLQALGQSVMSASIAYVFEKSFEAVNDTSVEYLRSKLNSETFLSRFFR 300

Query: 90  ELD 92
           ELD
Sbjct: 301 ELD 303


>gi|327293622|ref|XP_003231507.1| 60S ribosomal protein L3 [Trichophyton rubrum CBS 118892]
 gi|326466135|gb|EGD91588.1| 60S ribosomal protein L3 [Trichophyton rubrum CBS 118892]
          Length = 375

 Score = 36.6 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 12/73 (16%), Positives = 25/73 (34%)

Query: 23  LEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAE 82
           L + L  +S   S Q +      LG+ +L    +  L   +       L     + +  +
Sbjct: 94  LARTLIDASADTSTQFNNHSFSVLGNDLLSYYTTEHLITQYPRLPMSVLWTAMYAYIGPK 153

Query: 83  TCSQVARELDLAS 95
             + +A E  +  
Sbjct: 154 ALAVMANEWGVEH 166


>gi|224097989|ref|XP_002191539.1| PREDICTED: transcription factor NRF [Taeniopygia guttata]
          Length = 720

 Score = 36.6 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +  +   V +     A+G   +K+ ++  AA E LK
Sbjct: 402 NRSWRCQVYLQDHCLAEGFG-TKKTSKHAAAEEALK 436


>gi|331268392|ref|YP_004394884.1| RNase3 domain-containing protein [Clostridium botulinum BKT015925]
 gi|329124942|gb|AEB74887.1| RNase3 domain protein [Clostridium botulinum BKT015925]
          Length = 137

 Score = 36.6 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 41/112 (36%), Gaps = 18/112 (16%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102
           L F+GD I  + + T L +        +L V+  S V A + S++ +E+       ++ +
Sbjct: 23  LAFIGDAIYEVFVRTYLVDEHRDMSAHKLHVKAVSFVKAHSQSELMKEM----MDILTEE 78

Query: 103 LRKDVCSFM--------------TSIQADVVESLIAALYLDGGIEVAGTFVD 140
             +                        A   E+L+  LYL   +E     ++
Sbjct: 79  ECRIFKRGRNAKSGTVPKNADVTEYRMATGFEALMGFLYLTNQLERLNELMN 130


>gi|322821482|gb|EFZ27794.1| hypothetical protein TCSYLVIO_5988 [Trypanosoma cruzi]
          Length = 1702

 Score = 36.6 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 5/41 (12%)

Query: 184 DHDPRFTVVVEIS-----GLAPAQGMDCSKRAAEQVAAAEV 219
           D +  F   V +      G    +G+  +++ AE VAA   
Sbjct: 110 DEEKLFHARVRVPLPPEYGERWGEGLASTEKEAELVAAMHA 150


>gi|313227860|emb|CBY23009.1| unnamed protein product [Oikopleura dioica]
          Length = 495

 Score = 36.6 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 5/72 (6%)

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           +  +  +    LQE         P Y+     G D   +F  +   S     +  D S+ 
Sbjct: 285 ATDYANNPINVLQETLQKDGLPCPVYET--HRGKDG--KFEAICRASSEE-TRAFDQSEN 339

Query: 210 AAEQVAAAEVLK 221
            A++ AA +++K
Sbjct: 340 EAKRKAAHQMMK 351


>gi|313216318|emb|CBY37647.1| unnamed protein product [Oikopleura dioica]
          Length = 495

 Score = 36.6 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 5/72 (6%)

Query: 150 SGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           +  +  +    LQE         P Y+     G D   +F  +   S     +  D S+ 
Sbjct: 285 ATDYANNPINVLQETLQKDGLPCPVYET--HRGKDG--KFEAICRASSEE-TRAFDQSEN 339

Query: 210 AAEQVAAAEVLK 221
            A++ AA +++K
Sbjct: 340 EAKRKAAHQMMK 351


>gi|225682177|gb|EEH20461.1| predicted protein [Paracoccidioides brasiliensis Pb03]
          Length = 123

 Score = 36.6 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 43/94 (45%), Gaps = 4/94 (4%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++ + +E  IGY+F N +L  +AL  +S+     +  ++L   GD  + L ++   F + 
Sbjct: 14  VKVNAIESTIGYSFTNSNLCLEALWIASLITGEGD--KKLAQAGDDAVKLALAVSGFEN- 70

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
                G++S   ++  S         E++L   +
Sbjct: 71  -GYSRGQISEITSATASNRHLGYKGFEIELQEHM 103


>gi|71655009|ref|XP_816114.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70881219|gb|EAN94263.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 1732

 Score = 36.2 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 5/41 (12%)

Query: 184 DHDPRFTVVVEIS-----GLAPAQGMDCSKRAAEQVAAAEV 219
           D +  F   V +      G    +G+  +++ AE VAA   
Sbjct: 140 DEEKLFHARVRVPLPPEYGERWGEGLASTEKEAELVAAMHA 180


>gi|239609779|gb|EEQ86766.1| conserved hypothetical protein [Ajellomyces dermatitidis ER-3]
 gi|327353837|gb|EGE82694.1| hypothetical protein BDDG_05638 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 769

 Score = 36.2 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 13/65 (20%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSK--R---AAEQVA 215
           LQE+        P Y     +   H+  F   VE+ G++       +K  +    A   +
Sbjct: 341 LQEYCQQNKLDRPIY-----TKYAHEEGFWYEVEVGGVSCF---GANKFYKTATEAIHAS 392

Query: 216 AAEVL 220
           A   L
Sbjct: 393 AHAAL 397


>gi|330686232|gb|EGG97844.1| RNase3 domain protein [Staphylococcus epidermidis VCU121]
          Length = 132

 Score = 36.2 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 43/114 (37%), Gaps = 13/114 (11%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL--------DLA 94
           L ++GD +L   +   +     S     L       VSA++ +Q    L        +  
Sbjct: 14  LAYMGDAVLDQHVRKYIVLKLRSKP-NRLHQMSKLYVSAKSQAQTLETLIEEPWFTEEEM 72

Query: 95  SFIRVSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGIEVAGTFVDKYWK 144
             ++   + +    +  T +Q    +  +E++I  LYL+   E     +DK  +
Sbjct: 73  DILKRGRNAKSYTKAKNTDVQTYRKSSALEAVIGFLYLEHREERLKVLLDKIIE 126


>gi|328715219|ref|XP_003245565.1| PREDICTED: hypothetical protein LOC100573606 [Acyrthosiphon pisum]
          Length = 339

 Score = 36.2 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 6/79 (7%)

Query: 145 QRALKSGKFRRDAKT--ELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQ 202
            +     KF  D K    +Q     K G      +   + P     F V VEI  +    
Sbjct: 247 PKVGPMKKFPEDPKNCNPVQLINQMKPGAKFIETIISLNRPS---VFNVKVEIDNIT-FT 302

Query: 203 GMDCSKRAAEQVAAAEVLK 221
           G+  SK+AA++    E +K
Sbjct: 303 GLGSSKKAAKRECCIEAIK 321


>gi|111025555|ref|YP_707975.1| exoribonuclease R [Rhodococcus jostii RHA1]
 gi|110824534|gb|ABG99817.1| exoribonuclease R [Rhodococcus jostii RHA1]
          Length = 625

 Score = 36.2 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISG 197
           L   A       PE++     GP H PRFT  V ++G
Sbjct: 561 LMSLAQNNHQAPPEWEF-HIDGPAHAPRFTATVHLAG 596



 Score = 34.7 bits (79), Expect = 9.0,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 20/52 (38%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           W  +     P      R+G DH P F       G+     +  +K+ AEQ A
Sbjct: 435 WRQSHPDQPPTDLEIRRNGSDHHPLFAARATHLGVRGPWAIAAAKKPAEQAA 486


>gi|119480957|ref|XP_001260507.1| hypothetical protein NFIA_085650 [Neosartorya fischeri NRRL 181]
 gi|119408661|gb|EAW18610.1| conserved hypothetical protein [Neosartorya fischeri NRRL 181]
          Length = 323

 Score = 36.2 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 6/54 (11%)

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK-----TELQEWAHAKFGVTP 173
           A YL GG +     + +   Q     GK  +  K     TELQEW  +     P
Sbjct: 15  ATYL-GGTDKEIHELRRVLTQLMSAHGKLDKGYKSKAARTELQEWIQSNLHRLP 67


>gi|71001354|ref|XP_755358.1| conserved hypothetical protein [Aspergillus fumigatus Af293]
 gi|66852996|gb|EAL93320.1| conserved hypothetical protein [Aspergillus fumigatus Af293]
 gi|159129433|gb|EDP54547.1| conserved hypothetical protein [Aspergillus fumigatus A1163]
          Length = 316

 Score = 36.2 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 6/54 (11%)

Query: 125 ALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAK-----TELQEWAHAKFGVTP 173
           A YL GG +     + +   Q     GK  +  K     TELQEW  +     P
Sbjct: 15  ATYL-GGTDKEIHELRRVLTQLMSAHGKLDKGYKSKAARTELQEWIQSNLHRLP 67


>gi|111025367|ref|YP_707787.1| exoribonuclease II [Rhodococcus jostii RHA1]
 gi|110824346|gb|ABG99629.1| probable exoribonuclease II [Rhodococcus jostii RHA1]
          Length = 666

 Score = 36.2 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 19/52 (36%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVA 215
           W  A     P      R+G DH+P F        +        +K+ AEQ A
Sbjct: 436 WRQAHPDQPPTDLEIRRNGADHNPLFAARATHRSIRGPWATAAAKKPAEQAA 487


>gi|255527267|ref|ZP_05394148.1| ribonuclease III [Clostridium carboxidivorans P7]
 gi|296187246|ref|ZP_06855642.1| RNase3 domain protein [Clostridium carboxidivorans P7]
 gi|255509052|gb|EET85411.1| ribonuclease III [Clostridium carboxidivorans P7]
 gi|296048117|gb|EFG87555.1| RNase3 domain protein [Clostridium carboxidivorans P7]
          Length = 141

 Score = 36.2 bits (83), Expect = 3.7,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 18/100 (18%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102
           L F+GD +  + + T L +         L V+    V A   S+  ++++      +S +
Sbjct: 23  LAFVGDAVYEVFVRTYLVDKNRDMSVHNLHVKAIKFVKAHAQSEFIKKIEKE----LSEE 78

Query: 103 LRKDVCSFMTSI--------------QADVVESLIAALYL 128
                     S                A   E+LI  LYL
Sbjct: 79  EMYFFKRGRNSKSGTVPKNADVQEYRFATGFETLIGYLYL 118


>gi|321463658|gb|EFX74672.1| hypothetical protein DAPPUDRAFT_324075 [Daphnia pulex]
          Length = 119

 Score = 36.2 bits (83), Expect = 3.8,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 3/46 (6%)

Query: 5  RYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRI 50
          R   LE+ + Y F +++LL +AL    ++     +Y +    GD  
Sbjct: 35 RLEKLEEILNYEFHSKNLLLEALI---LNEDKNSNYNKDTCQGDSW 77


>gi|321458641|gb|EFX69706.1| hypothetical protein DAPPUDRAFT_300841 [Daphnia pulex]
          Length = 459

 Score = 36.2 bits (83), Expect = 3.8,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 7/59 (11%)

Query: 157 AKTELQEW-AHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPA-QGMDCSKRAAEQ 213
            KT L E+   A+    P Y          D  F   V + G   A + ++ +KR++EQ
Sbjct: 380 PKTVLHEYACKAQHSKLPLYHSEQV-----DKLFFSTVVVEGQRYANRYLEKNKRSSEQ 433


>gi|255576211|ref|XP_002528999.1| ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223531539|gb|EEF33369.1| ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 1509

 Score = 36.2 bits (83), Expect = 3.8,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 10/64 (15%)

Query: 149 KSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPR--FTVVVEISGLAPAQGMDC 206
           K G  ++  K  L +         P++K        H+ R  F+  V I  L  A G   
Sbjct: 403 KKGDPKKIPKAVLHQLCQKSGWEAPKFKKV------HERRKGFSYSVSI--LRKASGRGK 454

Query: 207 SKRA 210
           S++A
Sbjct: 455 SRKA 458


>gi|313219943|emb|CBY43644.1| unnamed protein product [Oikopleura dioica]
          Length = 813

 Score = 36.2 bits (83), Expect = 4.0,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 155 RDAKTELQEWA-HAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLA-PAQGMDCSKRAAE 212
            D K  L  W    +     +YK     G  H   F+  ++ISGL   A     SK+ A+
Sbjct: 117 NDIKGYLHIWCNQRRVTPEFDYK---ELGNRHKKLFSCSIQISGLDFVAIKEARSKKEAQ 173

Query: 213 QVA 215
             A
Sbjct: 174 NEA 176


>gi|256840310|ref|ZP_05545818.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|265753907|ref|ZP_06089262.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|256737582|gb|EEU50908.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|263235621|gb|EEZ21145.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 655

 Score = 35.8 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 19/107 (17%)

Query: 82  ETCSQVAREL--DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL------YLDGGIE 133
            + S + +E+  ++ + I +   +            A + E  I A+      YL GG  
Sbjct: 506 NSLSIMRKEMEENVNARIVLGGKIVNFKGR-----MAGIFEEAICAIQKKHPIYLLGGFG 560

Query: 134 VAGTFVDKYWK-----QRALKSGKFRRDAKTELQEWAHAKFGVTPEY 175
            A   + K  K     ++  +  K   D K  L E+       T  Y
Sbjct: 561 GASAQIVKLMKGETTAEKLFEEAKTNEDYKN-LIEYCQMSCLPTINY 606


>gi|312095309|ref|XP_003148313.1| hypothetical protein LOAG_12753 [Loa loa]
 gi|307756522|gb|EFO15756.1| hypothetical protein LOAG_12753 [Loa loa]
          Length = 265

 Score = 35.8 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 8/24 (33%), Positives = 11/24 (45%)

Query: 198 LAPAQGMDCSKRAAEQVAAAEVLK 221
           +    G   SK+ A+  AA   LK
Sbjct: 4   VVLGTGCGNSKKTAKLDAARNALK 27


>gi|328708018|ref|XP_003243573.1| PREDICTED: interferon-inducible double stranded RNA-dependent
           protein kinase activator A-like [Acyrthosiphon pisum]
          Length = 268

 Score = 35.8 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 152 KFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           +   +    LQE   A+    P+Y     +   H+P F VV  IS +    G D +
Sbjct: 65  RVELNPINALQELCVARHFSFPKYTFYVNNIMTHNPTFNVVCSIS-IYVTSGTDST 119


>gi|302689897|ref|XP_003034628.1| hypothetical protein SCHCODRAFT_107278 [Schizophyllum commune H4-8]
 gi|300108323|gb|EFI99725.1| hypothetical protein SCHCODRAFT_107278 [Schizophyllum commune H4-8]
          Length = 227

 Score = 35.8 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 1/46 (2%)

Query: 164 WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209
           +     G    ++     GP H P +T  +   G    +    SK+
Sbjct: 134 YIQQLTGTPFRFE-DKSHGPPHQPIWTSQLYFGGKLVGESQHSSKK 178


>gi|281204178|gb|EFA78374.1| protoporphyrinogen oxidase [Polysphondylium pallidum PN500]
          Length = 540

 Score = 35.8 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 7/85 (8%)

Query: 102 DLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDAKTEL 161
            L  D    + S+     +S     + DGG+++    + K   +R L          T +
Sbjct: 233 SLDHDSVRRVKSMLNKDNDSTRIFSFKDGGLQMLTDKLTKSIPERKLYMN-------THI 285

Query: 162 QEWAHAKFGVTPEYKVTFRSGPDHD 186
           Q    +    TP Y++    G +H+
Sbjct: 286 QSIERSDKNGTPVYRLVDSHGNEHE 310


>gi|194764847|ref|XP_001964539.1| GF22997 [Drosophila ananassae]
 gi|190614811|gb|EDV30335.1| GF22997 [Drosophila ananassae]
          Length = 453

 Score = 35.8 bits (82), Expect = 4.2,   Method: Composition-based stats.
 Identities = 7/30 (23%), Positives = 13/30 (43%)

Query: 191 VVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
             V ++    A G   + + A+Q A  + L
Sbjct: 220 AEVLVNDQVIATGQGENLKVAKQAAFKQAL 249


>gi|317156825|ref|XP_003190772.1| hypothetical protein AOR_1_664054 [Aspergillus oryzae RIB40]
          Length = 508

 Score = 35.8 bits (82), Expect = 4.2,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 45/123 (36%), Gaps = 13/123 (10%)

Query: 44  EFLGDRILGLL-ISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSS- 101
           E+LGD  + L+ +      +      G+++     L +      VA+   +   I  +S 
Sbjct: 36  EWLGDLGIDLIRLCLSFHAYQTRIPPGDIAAGKEKLCTYAHLVSVAQRTAIDRMIPYNSP 95

Query: 102 -DLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTF-VDKYWKQRALKSGKFRRDAKT 159
               + +    T      + ++IAA +LD G     T+ + +Y             D  T
Sbjct: 96  PGEERHITVGRT------MAAIIAAAHLDCGGSYRRTWQILEYIG--FFTQEDNGVDP-T 146

Query: 160 ELQ 162
            LQ
Sbjct: 147 RLQ 149


>gi|313224938|emb|CBY20730.1| unnamed protein product [Oikopleura dioica]
          Length = 686

 Score = 35.8 bits (82), Expect = 4.4,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVL 220
           L E+   +       +    +  +    ++++V + G   A      K+ A++ A    L
Sbjct: 216 LNEFCQFQRKSL---RFEDVAAKESYKNYSILVVVDGFEYAPAEAWKKKLAKEAACRNAL 272

Query: 221 KR 222
           KR
Sbjct: 273 KR 274


>gi|322712215|gb|EFZ03788.1| hypothetical protein MAA_00862 [Metarhizium anisopliae ARSEF 23]
          Length = 106

 Score = 35.8 bits (82), Expect = 4.6,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 8/67 (11%)

Query: 4  LRYSTLEKRIGYAFANRSLLEKAL------THSSISHSYQE--SYERLEFLGDRILGLLI 55
           +    E+  GY F  + L  +AL      T     H+ ++    +RL   GD +   ++
Sbjct: 9  EKIKRCEEATGYVFVKKELCAEALNASADGTACYYGHTLKQLRKNDRLAVYGDTVADSVL 68

Query: 56 STLLFNH 62
              +  
Sbjct: 69 CHRWYKQ 75


>gi|15926208|ref|NP_373741.1| hypothetical protein SA0489 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21282215|ref|NP_645303.1| hypothetical protein MW0486 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49485395|ref|YP_042616.1| hypothetical protein SAS0488 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57634655|ref|YP_182412.1| hypothetical protein SAV0530.1 [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|57651407|ref|YP_185463.1| hypothetical protein SACOL0577 [Staphylococcus aureus subsp. aureus
           COL]
 gi|87161610|ref|YP_493219.1| hypothetical protein SAUSA300_0516 [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88194293|ref|YP_499085.1| hypothetical protein SAOUHSC_00512 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|148266990|ref|YP_001245933.1| hypothetical protein SaurJH9_0553 [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150393037|ref|YP_001315712.1| hypothetical protein SaurJH1_0567 [Staphylococcus aureus subsp.
           aureus JH1]
 gi|151220705|ref|YP_001331527.1| hypothetical protein NWMN_0493 [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156978859|ref|YP_001441118.1| hypothetical protein SAHV_0528 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161508770|ref|YP_001574429.1| hypothetical protein USA300HOU_0524 [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221141033|ref|ZP_03565526.1| hypothetical protein SauraJ_05263 [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|253315640|ref|ZP_04838853.1| hypothetical protein SauraC_05747 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|253731135|ref|ZP_04865300.1| ribonuclease III [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253732538|ref|ZP_04866703.1| ribonuclease III [Staphylococcus aureus subsp. aureus TCH130]
 gi|255005324|ref|ZP_05143925.2| hypothetical protein SauraM_02615 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257795371|ref|ZP_05644350.1| ribonuclease III [Staphylococcus aureus A9781]
 gi|258420420|ref|ZP_05683363.1| ribonuclease III [Staphylococcus aureus A9719]
 gi|258439341|ref|ZP_05690273.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A9299]
 gi|258444081|ref|ZP_05692418.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|258446349|ref|ZP_05694507.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A6300]
 gi|258448442|ref|ZP_05696557.1| YazC [Staphylococcus aureus A6224]
 gi|258452737|ref|ZP_05700735.1| ribonuclease III [Staphylococcus aureus A5948]
 gi|258453798|ref|ZP_05701772.1| conserved hypothetical protein [Staphylococcus aureus A5937]
 gi|262049573|ref|ZP_06022442.1| hypothetical protein SAD30_0367 [Staphylococcus aureus D30]
 gi|262052419|ref|ZP_06024619.1| hypothetical protein SA930_0255 [Staphylococcus aureus 930918-3]
 gi|269202153|ref|YP_003281422.1| hypothetical protein SAAV_0492 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282894965|ref|ZP_06303188.1| ribonuclease III family protein [Staphylococcus aureus A8117]
 gi|282915853|ref|ZP_06323618.1| ribonuclease III family protein [Staphylococcus aureus subsp.
           aureus D139]
 gi|282924444|ref|ZP_06332116.1| ribonuclease III family protein [Staphylococcus aureus A9765]
 gi|282928867|ref|ZP_06336458.1| ribonuclease III family protein [Staphylococcus aureus A10102]
 gi|283769686|ref|ZP_06342578.1| ribonuclease III family protein [Staphylococcus aureus subsp.
           aureus H19]
 gi|284023540|ref|ZP_06377938.1| hypothetical protein Saura13_03082 [Staphylococcus aureus subsp.
           aureus 132]
 gi|294850306|ref|ZP_06791040.1| ribonuclease III family protein [Staphylococcus aureus A9754]
 gi|295406907|ref|ZP_06816710.1| ribonuclease III family protein [Staphylococcus aureus A8819]
 gi|296275776|ref|ZP_06858283.1| hypothetical protein SauraMR_05492 [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297208756|ref|ZP_06925184.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297246269|ref|ZP_06930118.1| ribonuclease III family protein [Staphylococcus aureus A8796]
 gi|300912846|ref|ZP_07130288.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH70]
 gi|304381871|ref|ZP_07364518.1| ribonuclease III [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|13183697|gb|AAK15304.1|AF327733_1 YazC [Staphylococcus aureus subsp. aureus str. Newman]
 gi|13700421|dbj|BAB41719.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           N315]
 gi|21203651|dbj|BAB94351.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MW2]
 gi|46395519|dbj|BAD16605.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|49243838|emb|CAG42263.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57285593|gb|AAW37687.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           COL]
 gi|87127584|gb|ABD22098.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87201851|gb|ABD29661.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|147740059|gb|ABQ48357.1| ribonuclease III [Staphylococcus aureus subsp. aureus JH9]
 gi|149945489|gb|ABR51425.1| ribonuclease III [Staphylococcus aureus subsp. aureus JH1]
 gi|150373505|dbj|BAF66765.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156720994|dbj|BAF77411.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu3]
 gi|160367579|gb|ABX28550.1| hypothetical protein USA300HOU_0524 [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|253725100|gb|EES93829.1| ribonuclease III [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253729467|gb|EES98196.1| ribonuclease III [Staphylococcus aureus subsp. aureus TCH130]
 gi|257789343|gb|EEV27683.1| ribonuclease III [Staphylococcus aureus A9781]
 gi|257843610|gb|EEV68016.1| ribonuclease III [Staphylococcus aureus A9719]
 gi|257847678|gb|EEV71677.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A9299]
 gi|257850751|gb|EEV74696.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|257854943|gb|EEV77888.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A6300]
 gi|257858311|gb|EEV81198.1| YazC [Staphylococcus aureus A6224]
 gi|257859610|gb|EEV82460.1| ribonuclease III [Staphylococcus aureus A5948]
 gi|257864054|gb|EEV86808.1| conserved hypothetical protein [Staphylococcus aureus A5937]
 gi|259159665|gb|EEW44709.1| hypothetical protein SA930_0255 [Staphylococcus aureus 930918-3]
 gi|259162313|gb|EEW46886.1| hypothetical protein SAD30_0367 [Staphylococcus aureus D30]
 gi|262074443|gb|ACY10416.1| hypothetical protein SAAV_0492 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|269940103|emb|CBI48479.1| putative ribonuclease [Staphylococcus aureus subsp. aureus TW20]
 gi|282320149|gb|EFB50494.1| ribonuclease III family protein [Staphylococcus aureus subsp.
           aureus D139]
 gi|282589475|gb|EFB94564.1| ribonuclease III family protein [Staphylococcus aureus A10102]
 gi|282592855|gb|EFB97859.1| ribonuclease III family protein [Staphylococcus aureus A9765]
 gi|282762647|gb|EFC02784.1| ribonuclease III family protein [Staphylococcus aureus A8117]
 gi|283459833|gb|EFC06923.1| ribonuclease III family protein [Staphylococcus aureus subsp.
           aureus H19]
 gi|285816230|gb|ADC36717.1| Small protein; cysteinyl-tRNA synthetase like-protein
           [Staphylococcus aureus 04-02981]
 gi|294822818|gb|EFG39253.1| ribonuclease III family protein [Staphylococcus aureus A9754]
 gi|294968138|gb|EFG44164.1| ribonuclease III family protein [Staphylococcus aureus A8819]
 gi|296886701|gb|EFH25606.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297176867|gb|EFH36125.1| ribonuclease III family protein [Staphylococcus aureus A8796]
 gi|300885950|gb|EFK81153.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH70]
 gi|302750422|gb|ADL64599.1| ribonuclease III [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304339657|gb|EFM05604.1| ribonuclease III [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|312829026|emb|CBX33868.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315128823|gb|EFT84822.1| hypothetical protein CGSSa03_13062 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|315196658|gb|EFU27005.1| hypothetical protein CGSSa01_14595 [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320141605|gb|EFW33444.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320141767|gb|EFW33595.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus MRSA177]
 gi|323439801|gb|EGA97518.1| hypothetical protein SAO11_1359 [Staphylococcus aureus O11]
 gi|323443097|gb|EGB00717.1| hypothetical protein SAO46_1004 [Staphylococcus aureus O46]
 gi|329313251|gb|AEB87664.1| Ribonuclease III [Staphylococcus aureus subsp. aureus T0131]
 gi|329727910|gb|EGG64359.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21172]
 gi|329731024|gb|EGG67397.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21189]
 gi|329731960|gb|EGG68316.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21193]
          Length = 134

 Score = 35.8 bits (82), Expect = 4.6,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 45/113 (39%), Gaps = 13/113 (11%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL--------DLA 94
           L ++GD +L   + T +      +K  +L       VSA++ +Q    L        +  
Sbjct: 17  LAYMGDAVLDQYVRTYIVLKL-KSKPNKLHQMSKKYVSAKSQAQTLEYLMEQEWFTDEEM 75

Query: 95  SFIRVSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGIEVAGTFVDKYW 143
             ++   + +    +  T +Q    +  +E++I  LYL+   E     ++K  
Sbjct: 76  DILKRGRNAKSHTKAKNTDVQTYRKSSAIEAVIGFLYLEKREERLEALLNKII 128


>gi|226289366|gb|EEH44878.1| predicted protein [Paracoccidioides brasiliensis Pb18]
          Length = 123

 Score = 35.8 bits (82), Expect = 4.6,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 4/94 (4%)

Query: 4   LRYSTLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHF 63
           ++ + +E  IGY+F N +L  +AL  +S      E  ++L   GD  + L ++   F + 
Sbjct: 14  VKVNAIESTIGYSFTNSNLCLEALWIAS--PITGEGDKKLAQAGDDAVKLALAVSGFEN- 70

Query: 64  DSAKEGELSVRFNSLVSAETCSQVARELDLASFI 97
                G++S   +   S         E++L   +
Sbjct: 71  -GYSRGQISEITSVTASNRHLGYKGFEIELQEHM 103


>gi|82750238|ref|YP_415979.1| hypothetical protein SAB0481 [Staphylococcus aureus RF122]
 gi|82655769|emb|CAI80169.1| conserved hypothetical protein [Staphylococcus aureus RF122]
          Length = 134

 Score = 35.8 bits (82), Expect = 4.8,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 45/113 (39%), Gaps = 13/113 (11%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL--------DLA 94
           L ++GD +L   + T +      +K  +L       VSA++ +Q    L        +  
Sbjct: 17  LAYMGDAVLDQYVRTYIVLKL-KSKPNKLHQMSKKYVSAKSQAQTLEYLMEQEWFTNEEM 75

Query: 95  SFIRVSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGIEVAGTFVDKYW 143
             ++   + +    +  T +Q    +  +E++I  LYL+   E     ++K  
Sbjct: 76  DILKRGRNAKSHTKAKNTDVQTYRKSSAIEAVIGFLYLEKREERLEALLNKII 128


>gi|147779552|emb|CAN61162.1| hypothetical protein VITISV_001392 [Vitis vinifera]
          Length = 458

 Score = 35.8 bits (82), Expect = 4.8,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 143 WKQRALKSGKFRRD-AKTELQEWAHAKFGVTPEYKVTFR 180
           W ++ +   + RRD  K +LQE A       P Y    R
Sbjct: 84  WVRKYVSRARNRRDRYKNQLQELAQRSCFNLPSYTCIRR 122


>gi|298693862|gb|ADI97084.1| putative cysteinyl-tRNA synthetase [Staphylococcus aureus subsp.
           aureus ED133]
          Length = 123

 Score = 35.8 bits (82), Expect = 4.8,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 45/113 (39%), Gaps = 13/113 (11%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL--------DLA 94
           L ++GD +L   + T +      +K  +L       VSA++ +Q    L        +  
Sbjct: 6   LAYMGDAVLDQYVRTYIVLKL-KSKPNKLHQMSKKYVSAKSQAQTLEYLMEQEWFTDEEM 64

Query: 95  SFIRVSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGIEVAGTFVDKYW 143
             ++   + +    +  T +Q    +  +E++I  LYL+   E     ++K  
Sbjct: 65  DILKRGRNAKSHTKAKNTDVQTYRKSSAIEAVIGFLYLEKREERLEALLNKII 117


>gi|258512690|ref|YP_003186124.1| ribonuclease III [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257479416|gb|ACV59735.1| ribonuclease III [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 137

 Score = 35.8 bits (82), Expect = 5.0,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 11/95 (11%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL------ASF 96
           L FLGD +  +  +     +    +  +L  +    VSA   ++  R L+          
Sbjct: 15  LAFLGDAVWEIY-ARNHCLNLGILRPRDLQRQATRYVSAVAQAEALRLLEPMLTDAERDV 73

Query: 97  IRVSSDLRKDVCSFMTSI----QADVVESLIAALY 127
           IR   + +         +     A   E+L+  LY
Sbjct: 74  IRRGRNQKSSHTRRNVDVVVYRLATGFEALVGYLY 108


>gi|86134021|ref|ZP_01052603.1| conserved hypothetical protein [Polaribacter sp. MED152]
 gi|85820884|gb|EAQ42031.1| conserved hypothetical protein [Polaribacter sp. MED152]
          Length = 935

 Score = 35.8 bits (82), Expect = 5.0,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 16/78 (20%)

Query: 1   MSALRYSTLEKR----IGYAFANRSLLEKALTHS--SISHSYQESYER----LEF----- 45
           + +   S LE      + Y F++R  L++ALT S  S+S+  ++   R    L F     
Sbjct: 378 LRSFNLSKLEFNDKYPLVYQFSSRRFLDQALTTSADSLSNFNRKIANRYKAGLAFKYLKG 437

Query: 46  -LGDRILGLLISTLLFNH 62
            LGD +L   I      +
Sbjct: 438 YLGDSLLNSSIKEFYQEN 455


>gi|307199731|gb|EFN80210.1| NF-kappa-B-repressing factor [Harpegnathos saltator]
          Length = 391

 Score = 35.4 bits (81), Expect = 5.3,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 15/38 (39%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           +      + I     A     S++ A++ AAA  L + 
Sbjct: 196 NKSCDCTIYIDSKRVACASGSSQKIAKKEAAAVALDKL 233


>gi|297279850|ref|XP_001102807.2| PREDICTED: myomegalin-like [Macaca mulatta]
          Length = 346

 Score = 35.4 bits (81), Expect = 5.3,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 13/64 (20%)

Query: 161 LQE---------WAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGM-DCSKRA 210
           LQE         +A A      +Y+V   +G     +F+  V++  L    G    SK  
Sbjct: 85  LQEKLLLSEATVFAQANELE--KYRVIL-TGESLVKQFSKQVQVDLLDLGYGTCGRSKNE 141

Query: 211 AEQV 214
           AEQ 
Sbjct: 142 AEQE 145


>gi|218290035|ref|ZP_03494202.1| ribonuclease III [Alicyclobacillus acidocaldarius LAA1]
 gi|218239869|gb|EED07057.1| ribonuclease III [Alicyclobacillus acidocaldarius LAA1]
          Length = 137

 Score = 35.4 bits (81), Expect = 5.3,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 11/95 (11%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL------ASF 96
           L FLGD +  +  +     +    +  +L  +    VSA   ++  R L+          
Sbjct: 15  LAFLGDAVWEIY-ARNHCLNLGILRPRDLQRQATRYVSAVAQAEALRLLEPMLTEAERDV 73

Query: 97  IRVSSDLRKDVCSFMTSI----QADVVESLIAALY 127
           IR   + +         +     A   E+L+  LY
Sbjct: 74  IRRGRNQKSSHTRRNVDVVVYRLATGFEALVGYLY 108


>gi|254828700|ref|ZP_05233387.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|254831935|ref|ZP_05236590.1| YazC protein [Listeria monocytogenes 10403S]
 gi|255027362|ref|ZP_05299348.1| YazC protein [Listeria monocytogenes FSL J2-003]
 gi|284800535|ref|YP_003412400.1| hypothetical protein LM5578_0282 [Listeria monocytogenes 08-5578]
 gi|284993721|ref|YP_003415489.1| hypothetical protein LM5923_0281 [Listeria monocytogenes 08-5923]
 gi|258601105|gb|EEW14430.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|284056097|gb|ADB67038.1| hypothetical protein LM5578_0282 [Listeria monocytogenes 08-5578]
 gi|284059188|gb|ADB70127.1| hypothetical protein LM5923_0281 [Listeria monocytogenes 08-5923]
          Length = 136

 Score = 35.4 bits (81), Expect = 5.3,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 41/114 (35%), Gaps = 13/114 (11%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI----- 97
           L ++GD +    I   L       K  +L       VSA+  +   + +    F+     
Sbjct: 15  LAYMGDAVYEKFIREYLLAAG-KTKPNQLHKTATKFVSAKGQAVALKAMIAEGFLTEEED 73

Query: 98  RVSSDLRKDVCSFMTSI-------QADVVESLIAALYLDGGIEVAGTFVDKYWK 144
           R++   R      +           +   E+++  LYL G ++    +++K  +
Sbjct: 74  RIAKRGRNAKSYTVPKNTDPGTYSMSTSFEAVLGYLYLAGDVDRLQEWMEKALE 127


>gi|223043008|ref|ZP_03613056.1| cysteinyl-tRNA synthetase [Staphylococcus capitis SK14]
 gi|314932754|ref|ZP_07840123.1| cysteine--tRNA ligase [Staphylococcus caprae C87]
 gi|222443862|gb|EEE49959.1| cysteinyl-tRNA synthetase [Staphylococcus capitis SK14]
 gi|313654435|gb|EFS18188.1| cysteine--tRNA ligase [Staphylococcus caprae C87]
          Length = 128

 Score = 35.4 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 40/100 (40%), Gaps = 13/100 (13%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL--------DLA 94
           L ++GD +L   +   +      +K   L       VSA++ +Q    L        +  
Sbjct: 11  LAYMGDAVLDQHVREYIVLKL-QSKPNRLHQVSKQYVSAKSQAQTLEYLISNDWFTEEEL 69

Query: 95  SFIRVSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDG 130
           + +R   + +    +  T +Q    +  +E++I  LYLD 
Sbjct: 70  NVLRRGRNAKSYTKAKNTDVQTYRKSSALEAVIGFLYLDH 109


>gi|71408148|ref|XP_806495.1| RNA editing complex protein MP61 [Trypanosoma cruzi strain CL
           Brener]
 gi|70870260|gb|EAN84644.1| RNA editing complex protein MP61, putative [Trypanosoma cruzi]
          Length = 532

 Score = 35.4 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 11/92 (11%)

Query: 40  YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS---LVSAETCSQVARELDLASF 96
           +ERLE++GD ++  + +      F   + G       +   +   +  ++    L+L  F
Sbjct: 220 FERLEWIGDNVVKYVFNDRFNVIFPVREGGIRGRLGYAQFMIDGNDGLARAYDHLELQKF 279

Query: 97  IRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
                         ++  ++DVVE+L   L L
Sbjct: 280 TL--------SDRVVSKFKSDVVETLFGELQL 303


>gi|302680092|ref|XP_003029728.1| expressed protein [Schizophyllum commune H4-8]
 gi|300103418|gb|EFI94825.1| expressed protein [Schizophyllum commune H4-8]
          Length = 514

 Score = 35.4 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 40/114 (35%), Gaps = 14/114 (12%)

Query: 34  HSYQESYERLEFLGDRILGLLISTLLFNHFDSAK--EGELSVRFNSLVSAETCSQVAREL 91
           H  +  ++ LE  GD +L L I  L+   F           V  ++L S      + +  
Sbjct: 108 HGSRVVFDILERRGDLVLYLYIGRLILETFPRICGFPQLFFVIRSALTSNFFLGCLLKGQ 167

Query: 92  DLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145
            L   +      +           AD++E+++  L    G   A  FVD   + 
Sbjct: 168 HLWPGLI---GEKSA---------ADMLEAIVGKLDQIRGAATAEAFVDDLLRP 209


>gi|89100737|ref|ZP_01173592.1| hypothetical protein B14911_00239 [Bacillus sp. NRRL B-14911]
 gi|89084554|gb|EAR63700.1| hypothetical protein B14911_00239 [Bacillus sp. NRRL B-14911]
          Length = 141

 Score = 35.4 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 46/134 (34%), Gaps = 13/134 (9%)

Query: 34  HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDL 93
           +  Q +   L ++GD +    +   L     + +   L     + VSA+  S V  +   
Sbjct: 9   NEKQLNSLALAYMGDAVFEQYVRNHLIQKG-TVRPNFLHKEATAYVSAKAQSYVIHKFLE 67

Query: 94  ASFI--------RVSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGIEVAGTFVDK 141
           A F+        R   + +       T +Q    +   E+LI  LYL G  E     +  
Sbjct: 68  ADFLDEEEAAVVRRGRNAKSGTIPKNTDVQTYRYSTAFEALIGYLYLAGAEERLEEIISA 127

Query: 142 YWKQRALKSGKFRR 155
            +     + G   +
Sbjct: 128 AFLHAEERKGGQGK 141


>gi|161579135|gb|ABX72055.1| C3PO protein [Tribolium castaneum]
          Length = 117

 Score = 35.4 bits (81), Expect = 5.7,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 189 FTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKRE 223
           F   V+  G   A G   SK+ A+  +A   L + 
Sbjct: 15  FKCTVKAGG-VTACGYGTSKKNAKHESAKNALVKL 48


>gi|331003583|ref|ZP_08327080.1| hypothetical protein HMPREF0491_01942 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412424|gb|EGG91815.1| hypothetical protein HMPREF0491_01942 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 151

 Score = 35.4 bits (81), Expect = 5.7,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 42/109 (38%), Gaps = 11/109 (10%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAR----ELDLASFIR 98
           L ++GD +  L+I ++L +   +    +L+     LV A   +Q+ +    EL    FI 
Sbjct: 27  LAYIGDAVYELIIRSILVS-GGNRPVNKLNKDATYLVKAGAQAQIIKLITSELSEEEFII 85

Query: 99  VSSDLRKD------VCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDK 141
                           S      A   ESLI  LYL+   E A   V K
Sbjct: 86  FKRGRNSSPHTMAKNASMSDYKHATGFESLIGYLYLNNQFERALWIVRK 134


>gi|260437952|ref|ZP_05791768.1| cysteine--tRNA ligase [Butyrivibrio crossotus DSM 2876]
 gi|292809703|gb|EFF68908.1| cysteine--tRNA ligase [Butyrivibrio crossotus DSM 2876]
          Length = 139

 Score = 35.4 bits (81), Expect = 5.9,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 45/120 (37%), Gaps = 19/120 (15%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSD 102
           L ++GD +  L+I T L     +A   +L+ + ++L  A T +++   +       +S D
Sbjct: 24  LAYIGDCVYELIIRTNLVTRG-NAPVNKLNKKASNLAKASTQARIIESI----MDMLSED 78

Query: 103 LRKDVCSFM--------------TSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQRAL 148
                                     +A   E+LI  LYL    +     V K +++  +
Sbjct: 79  EEAAYKRGRNAHSCTKAKNASTSDYRKATGFEALIGYLYLQKKFDRIMELVKKGFQEEHI 138


>gi|38073445|gb|AAR10843.1| MP61 [Trypanosoma cruzi]
          Length = 532

 Score = 35.4 bits (81), Expect = 5.9,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 11/92 (11%)

Query: 40  YERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNS---LVSAETCSQVARELDLASF 96
           +ERLE++GD ++  + +      F   + G       +   +   +  ++    L+L  F
Sbjct: 220 FERLEWIGDNVVKYVFNDRFNVIFPVREGGIRGRLGYAQFMIDGNDGLARAYDHLELQKF 279

Query: 97  IRVSSDLRKDVCSFMTSIQADVVESLIAALYL 128
                         ++  ++DVVE+L   L L
Sbjct: 280 TL--------SDRVVSKFKSDVVETLFGELQL 303


>gi|301611921|ref|XP_002935471.1| PREDICTED: APOBEC1 complementation factor-like isoform 2 [Xenopus
           (Silurana) tropicalis]
          Length = 579

 Score = 35.4 bits (81), Expect = 5.9,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 13/35 (37%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
           L+E         P Y++    GPD    F   V I
Sbjct: 444 LEEICQKNNWGQPVYQLHSAIGPDQRQLFLYKVTI 478


>gi|301611919|ref|XP_002935470.1| PREDICTED: APOBEC1 complementation factor-like isoform 1 [Xenopus
           (Silurana) tropicalis]
          Length = 587

 Score = 35.4 bits (81), Expect = 5.9,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 13/35 (37%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
           L+E         P Y++    GPD    F   V I
Sbjct: 452 LEEICQKNNWGQPVYQLHSAIGPDQRQLFLYKVTI 486


>gi|149637182|ref|XP_001509697.1| PREDICTED: similar to NF-kappaB repressing factor [Ornithorhynchus
           anatinus]
          Length = 680

 Score = 35.4 bits (81), Expect = 5.9,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 186 DPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLK 221
           +  +   V +     A+G   SK+ ++  AA E L+
Sbjct: 362 NRTWRCRVYLQDHCLAEGYG-SKKTSKHAAADEALR 396


>gi|147905061|ref|NP_001086049.1| APOBEC1 complementation factor [Xenopus laevis]
 gi|49522081|gb|AAH74127.1| MGC81834 protein [Xenopus laevis]
          Length = 584

 Score = 35.4 bits (81), Expect = 5.9,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 13/35 (37%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEI 195
           L+E         P Y++    GPD    F   V I
Sbjct: 449 LEEICQKNNWGQPVYQLHSAIGPDQRQLFLYKVTI 483


>gi|312621708|ref|YP_004023321.1| ribonuclease iii [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202175|gb|ADQ45502.1| ribonuclease III [Caldicellulosiruptor kronotskyensis 2002]
          Length = 145

 Score = 35.4 bits (81), Expect = 6.0,   Method: Composition-based stats.
 Identities = 16/123 (13%), Positives = 42/123 (34%), Gaps = 10/123 (8%)

Query: 45  FLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL--DLAS----FIR 98
           ++GD +  L +   +             +R    V A + +   +++  +L       ++
Sbjct: 23  YIGDAVYELFVRNKIIAENPDLPPYLYYLRTTMYVKASSQAMAIKKIYEELDEDEKRIVK 82

Query: 99  VSSDLRKDVCSFMTSI----QADVVESLIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR 154
              + +         +     A  +E+LI  LYL+  IE     + + +     +    +
Sbjct: 83  RGRNAKPKTIPKNAKLSDYKYATALEALIGYLYLENNIERLNYILSQTYNIITEEYSNAK 142

Query: 155 RDA 157
            + 
Sbjct: 143 NNY 145


>gi|118444271|ref|YP_877178.1| hypothetical protein NT01CX_1094 [Clostridium novyi NT]
 gi|118134727|gb|ABK61771.1| uncharacterized conserved protein [Clostridium novyi NT]
          Length = 137

 Score = 35.4 bits (81), Expect = 6.0,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 39/108 (36%), Gaps = 10/108 (9%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELD---LASFIRV 99
           L F+GD I  + +   L          +L V+  S V A + S++ +++         R+
Sbjct: 23  LAFVGDAIYEVFVRRYLVEQNQDMSAHKLHVKAVSYVKAHSQSEIMKQIKESLTEEEERI 82

Query: 100 SSDLRKDVCSFMTSI-------QADVVESLIAALYLDGGIEVAGTFVD 140
               R      +           A   E+L+  LYL   ++     ++
Sbjct: 83  FKRGRNAKSGTVPKNADVREYRMATGFEALMGFLYLTNQLDRLNELMN 130


>gi|154482525|ref|ZP_02024973.1| hypothetical protein EUBVEN_00192 [Eubacterium ventriosum ATCC
           27560]
 gi|149736655|gb|EDM52541.1| hypothetical protein EUBVEN_00192 [Eubacterium ventriosum ATCC
           27560]
          Length = 1746

 Score = 35.4 bits (81), Expect = 6.1,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 36/117 (30%), Gaps = 27/117 (23%)

Query: 99  VSSDLRKDVCSFMTSIQADVVESL-IAALYLDGGIEVAGTFVDKYWKQRALKSGKFRRDA 157
           +S            S+  D+ +   +  ++L   +E    +         L+  +   + 
Sbjct: 300 LSEGEDNVQSKCNQSLTVDLGKKYTLGRVFLQWQVEYGNIW--------DLQVSEDGTNF 351

Query: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVV----VEISGLAPAQGMDCSKRA 210
           KT               Y+    +G D D +F       V + G+   +G   S R 
Sbjct: 352 KT--------------VYRQLQGNGEDEDIKFYAENVRYVRMQGILMGRGSGYSIRE 394


>gi|72387752|ref|XP_844300.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|62359452|gb|AAX79889.1| hypothetical protein, conserved [Trypanosoma brucei]
 gi|70800833|gb|AAZ10741.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
            927/4 GUTat10.1]
          Length = 2167

 Score = 35.4 bits (81), Expect = 6.1,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 2/76 (2%)

Query: 147  ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP--AQGM 204
             ++S     DAKT LQ + +      P +  +   GP         +E+ G     A G+
Sbjct: 1015 EVESMPIDPDAKTVLQRYCNVANVNYPTFWKSRTVGPISCRVCLTTIEVPGHEYLRASGV 1074

Query: 205  DCSKRAAEQVAAAEVL 220
              +K A+++ AA   L
Sbjct: 1075 AWNKEASQRQAAMHAL 1090


>gi|302332244|gb|ADL22437.1| ribonuclease III [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 134

 Score = 35.4 bits (81), Expect = 6.1,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 45/113 (39%), Gaps = 13/113 (11%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL--------DLA 94
           L ++GD +L   + T +      +K  +L       VSA++ +Q    L        +  
Sbjct: 17  LAYMGDAVLDQYVRTYIVLKL-KSKPNKLHQMSKKYVSAKSQAQTLEYLMEQEWFTDEEM 75

Query: 95  SFIRVSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGIEVAGTFVDKYW 143
             ++   + +    +  T +Q    +  +E++I  LYL+   E     ++K  
Sbjct: 76  DILKRGRNAKSHTKAKNTDVQTYRKSSAIEAVIGFLYLEKREERLEVLLNKII 128


>gi|16802286|ref|NP_463771.1| hypothetical protein lmo0240 [Listeria monocytogenes EGD-e]
 gi|224498914|ref|ZP_03667263.1| hypothetical protein LmonF1_04103 [Listeria monocytogenes Finland
           1988]
 gi|224502465|ref|ZP_03670772.1| hypothetical protein LmonFR_08089 [Listeria monocytogenes FSL
           R2-561]
 gi|255028570|ref|ZP_05300521.1| hypothetical protein LmonL_04056 [Listeria monocytogenes LO28]
 gi|16409605|emb|CAD00767.1| lmo0240 [Listeria monocytogenes EGD-e]
          Length = 136

 Score = 35.4 bits (81), Expect = 6.1,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 41/114 (35%), Gaps = 13/114 (11%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI----- 97
           L ++GD +    I   L       K  +L       VSA+  +   + +    F+     
Sbjct: 15  LAYMGDAVYEKFIREYLLAAG-KTKPNQLHKTATKFVSAKGQAVALKAMIAEGFLTEEED 73

Query: 98  RVSSDLRKDVCSFMTSI-------QADVVESLIAALYLDGGIEVAGTFVDKYWK 144
           R++   R      +           +   E+++  LYL G +E    +++K  +
Sbjct: 74  RIAKRGRNAKSYTVPKNTDPGTYSMSTSFEAVLGYLYLAGEMERLQEWMEKALE 127


>gi|316973958|gb|EFV57499.1| putative double-stranded RNA binding motif protein [Trichinella
           spiralis]
          Length = 514

 Score = 35.4 bits (81), Expect = 6.2,   Method: Composition-based stats.
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query: 198 LAPAQGMDCSKRAAEQVAAAEVLK 221
           +    G   SK+ A+  AA + LK
Sbjct: 263 VTIGVGNGNSKKNAKLEAARQALK 286


>gi|257439636|ref|ZP_05615391.1| ribonuclease III [Faecalibacterium prausnitzii A2-165]
 gi|257197903|gb|EEU96187.1| ribonuclease III [Faecalibacterium prausnitzii A2-165]
          Length = 150

 Score = 35.4 bits (81), Expect = 6.2,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 13/114 (11%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSV-------RFNSLVSAETCSQVARELDLAS 95
           L F+GD +L LL+ T L  H      G+L+V               +    +  E +LA 
Sbjct: 33  LAFVGDSVLELLVRTRLARHHR-MSAGKLNVEKVKYVSARAQFREEQLLEPLFTEEELAV 91

Query: 96  FIRVSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145
           F +   +  K   +   S +    +   E L+  LYL G +       D  W+Q
Sbjct: 92  F-KRGRNASKASVAKHASPEEYRASTGFECLLGWLYLTGQMARVEELFDALWQQ 144


>gi|320162745|gb|EFW39644.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 915

 Score = 35.4 bits (81), Expect = 6.2,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 6/38 (15%)

Query: 15  YAFAN--RSLLEKALTHSSISHSYQESY----ERLEFL 46
           Y FAN  R++L  ALTH S +   +E+     +RL FL
Sbjct: 211 YEFANHCRTILTLALTHPSFTFHQKETVMGLLQRLLFL 248


>gi|315274657|ref|ZP_07869497.1| ribonuclease III [Listeria marthii FSL S4-120]
 gi|313615714|gb|EFR89002.1| ribonuclease III [Listeria marthii FSL S4-120]
          Length = 136

 Score = 35.4 bits (81), Expect = 6.2,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 41/114 (35%), Gaps = 13/114 (11%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI----- 97
           L ++GD +    I   L       K  +L       VSA+  +   + +    F+     
Sbjct: 15  LAYMGDAVYEKFIREYLLAAG-KTKPNQLHKTATKFVSAKGQAVALKAMIAEGFLTEEED 73

Query: 98  RVSSDLRKDVCSFMTSI-------QADVVESLIAALYLDGGIEVAGTFVDKYWK 144
           R++   R      +           +   E+++  LYL G ++    +++K  +
Sbjct: 74  RIAKRGRNAKSYTVPKNTDPGTYSMSTSFEAVLGYLYLAGEMDRLQEWMEKALE 127


>gi|149245990|ref|XP_001527465.1| hypothetical protein LELG_02294 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146449859|gb|EDK44115.1| hypothetical protein LELG_02294 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 721

 Score = 35.4 bits (81), Expect = 6.2,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 33/106 (31%), Gaps = 9/106 (8%)

Query: 47  GDRILGLLISTLLFNHFDSAKEGEL-SVRFNSLVSAETCSQVARELDLASFI-------R 98
           GD +L    +  L             +     L +    S+++    L   I        
Sbjct: 580 GDAVLSRFSTEFLIQLLKQNPNFRWNTDDLFFLNTNVIFSRLSFAYSLHEAIDNQEHRRL 639

Query: 99  VSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWK 144
           V   +     +    I  D+ E L+A  Y+    E    +V K ++
Sbjct: 640 VEQKILLSHLNEANEILGDLFERLVAVTYI-QDPERCREWVFKIYE 684


>gi|310779626|ref|YP_003967959.1| ribonuclease III [Ilyobacter polytropus DSM 2926]
 gi|309748949|gb|ADO83611.1| ribonuclease III [Ilyobacter polytropus DSM 2926]
          Length = 127

 Score = 35.4 bits (81), Expect = 6.3,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 46/113 (40%), Gaps = 12/113 (10%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL--DLA-SFIRV 99
           L +LGD +  L +           K   ++ +   LV+A+  S + + +  DL   +  V
Sbjct: 14  LAYLGDAVWELTVREYFVEK--GYKINTMNKKVKKLVNAKAQSVIFKSILEDLDEDYKAV 71

Query: 100 SSDLRKDV-------CSFMTSIQADVVESLIAALYLDGGIEVAGTFVDKYWKQ 145
           +   +          CS M   +A   E+LIAA Y++G        ++ +  +
Sbjct: 72  ARRAKNSNIKSFPRSCSIMEYREATAFEALIAAFYINGETCRIKKILENHISE 124


>gi|261327455|emb|CBH10430.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972]
          Length = 2173

 Score = 35.4 bits (81), Expect = 6.3,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 2/76 (2%)

Query: 147  ALKSGKFRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAP--AQGM 204
             ++S     DAKT LQ + +      P +  +   GP         +E+ G     A G+
Sbjct: 1021 EVESMPIDPDAKTVLQRYCNVANVNYPTFWKSRTVGPISCRVCLTTIEVPGHEYLRASGV 1080

Query: 205  DCSKRAAEQVAAAEVL 220
              +K A+++ AA   L
Sbjct: 1081 AWNKEASQRQAAMHAL 1096


>gi|145603542|ref|XP_369494.2| hypothetical protein MGG_05970 [Magnaporthe oryzae 70-15]
 gi|145011757|gb|EDJ96413.1| hypothetical protein MGG_05970 [Magnaporthe oryzae 70-15]
          Length = 117

 Score = 35.4 bits (81), Expect = 6.7,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 1/71 (1%)

Query: 78  LVSAETCSQVARELDLASFIRVSSDLRKDVCS-FMTSIQADVVESLIAALYLDGGIEVAG 136
           +V     +++  E  L   +R        + S  M  +  D + ++I A+ +  G EVA 
Sbjct: 44  IVDQVKLARLGMEYGLHEVVRWQPRAISSINSSGMQKVMKDCIYAIIGAISMQHGAEVAR 103

Query: 137 TFVDKYWKQRA 147
               +   ++ 
Sbjct: 104 RVCRERVIKKV 114


>gi|225719036|gb|ACO15364.1| Interferon-inducible double stranded RNA-dependent protein kinase
           activator A [Caligus clemensi]
          Length = 324

 Score = 35.1 bits (80), Expect = 7.0,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 6/65 (9%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPD-HDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           LQ          P+Y+ +  S    H+    V V +      +G    K+ A+++A+  +
Sbjct: 141 LQILCTKSKLEAPQYEYSQDSVSSRHEAVCKVGVLV-----TKGEHSVKKEAKKIASMNM 195

Query: 220 LKREG 224
           + + G
Sbjct: 196 IAQMG 200


>gi|169830057|ref|YP_001700215.1| hypothetical protein Bsph_4641 [Lysinibacillus sphaericus C3-41]
 gi|168994545|gb|ACA42085.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 137

 Score = 35.1 bits (80), Expect = 7.2,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 39/109 (35%), Gaps = 13/109 (11%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI----- 97
           L ++GD +L   I   L       K   L       VSA+  S +   +   +++     
Sbjct: 17  LAYMGDAVLEQKIREHLLRSGR-VKPNTLHREATRYVSAKAQSMIVHRMMDENYLTEEEL 75

Query: 98  ---RVSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGIEVAGTFV 139
              R   + +       T +Q    +   E+++ +LYL   +E     +
Sbjct: 76  AVFRRGRNAKSGSVPKNTDVQTYRNSSGFEAVLGSLYLLNELERVYEII 124


>gi|46906473|ref|YP_012862.1| hypothetical protein LMOf2365_0252 [Listeria monocytogenes serotype
           4b str. F2365]
 gi|46879737|gb|AAT03039.1| conserved hypothetical protein [Listeria monocytogenes serotype 4b
           str. F2365]
          Length = 141

 Score = 35.1 bits (80), Expect = 7.3,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 41/114 (35%), Gaps = 13/114 (11%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI----- 97
           L ++GD +    I   L       K  +L       VSA+  +   + +    F+     
Sbjct: 15  LAYMGDAVYEKFIREYLLAAG-KTKPNQLHKTATKFVSAKGQAVALKAMIAEGFLTEEED 73

Query: 98  RVSSDLRKDVCSFMTSI-------QADVVESLIAALYLDGGIEVAGTFVDKYWK 144
           R++   R      +           +   E+++  LYL G ++    +++K  +
Sbjct: 74  RIAKRGRNAKSYTVPKNTDPGTYSMSTSFEAVLGYLYLAGELDRLQEWMEKALE 127


>gi|321469560|gb|EFX80540.1| hypothetical protein DAPPUDRAFT_211957 [Daphnia pulex]
          Length = 549

 Score = 35.1 bits (80), Expect = 7.4,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCS 207
           L E+        P Y  TF+   +    ++  V I+G+    G+  S
Sbjct: 280 LHEYVQHALKKQPAY--TFKEIENAATPYSATVLINGMQYGTGVGSS 324


>gi|308171986|ref|YP_003918691.1| RNase Mini-III MrnC [Bacillus amyloliquefaciens DSM 7]
 gi|307604850|emb|CBI41221.1| RNase Mini-III MrnC [Bacillus amyloliquefaciens DSM 7]
 gi|328551796|gb|AEB22288.1| RNase Mini-III MrnC [Bacillus amyloliquefaciens TA208]
 gi|328910057|gb|AEB61653.1| RNase Mini-III MrnC [Bacillus amyloliquefaciens LL3]
          Length = 143

 Score = 35.1 bits (80), Expect = 7.6,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 45/114 (39%), Gaps = 13/114 (11%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASF------ 96
           L ++GD I  + +   L       K  +L  + + +VSA++ + +   L   SF      
Sbjct: 18  LAYMGDAIFEIYVRHHLLKQG-HTKPNDLHKKASRIVSAKSQADILFRLQDESFFTEEEE 76

Query: 97  --IRVSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGIEVAGTFVDKYWK 144
             +R   + +       T +Q    +   E+L+  L+L+   E     + +  +
Sbjct: 77  AVLRRGRNAKSGTTPKNTDVQTYRHSTAFEALLGYLFLEKREERLDQLITEALQ 130


>gi|116871623|ref|YP_848404.1| hypothetical protein lwe0203 [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116740501|emb|CAK19621.1| conserved hypothetical protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 136

 Score = 35.1 bits (80), Expect = 8.2,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 40/114 (35%), Gaps = 13/114 (11%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI----- 97
           L ++GD +    I   L       K  +L       VSA+  +   + +    F+     
Sbjct: 15  LAYMGDAVYEKFIREYLLAAG-KTKPNQLHKTATKFVSAKGQAMALKVMIAEGFLTEEED 73

Query: 98  RVSSDLRKDVCSFMTSI-------QADVVESLIAALYLDGGIEVAGTFVDKYWK 144
           R++   R      +           +   E+++  LYL G +     +++K  +
Sbjct: 74  RIAKRGRNAKSYTVPKNTDPGTYSMSTSFEAVLGYLYLAGDMRRLQEWMEKALE 127


>gi|226222869|ref|YP_002756976.1| YazC protein [Listeria monocytogenes Clip81459]
 gi|254853493|ref|ZP_05242841.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|254932459|ref|ZP_05265818.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|254991760|ref|ZP_05273950.1| YazC protein [Listeria monocytogenes FSL J2-064]
 gi|300764635|ref|ZP_07074627.1| hypothetical protein LMHG_11119 [Listeria monocytogenes FSL N1-017]
 gi|225875331|emb|CAS04028.1| Putative YazC protein [Listeria monocytogenes serotype 4b str. CLIP
           80459]
 gi|258606865|gb|EEW19473.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|293584015|gb|EFF96047.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|300514742|gb|EFK41797.1| hypothetical protein LMHG_11119 [Listeria monocytogenes FSL N1-017]
 gi|328467851|gb|EGF38891.1| YazC protein [Listeria monocytogenes 1816]
 gi|328476081|gb|EGF46790.1| YazC protein [Listeria monocytogenes 220]
 gi|332310651|gb|EGJ23746.1| Ribonuclease III [Listeria monocytogenes str. Scott A]
          Length = 136

 Score = 35.1 bits (80), Expect = 8.5,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 41/114 (35%), Gaps = 13/114 (11%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI----- 97
           L ++GD +    I   L       K  +L       VSA+  +   + +    F+     
Sbjct: 15  LAYMGDAVYEKFIREYLLAAG-KTKPNQLHKTATKFVSAKGQAVALKAMIAEGFLTEEED 73

Query: 98  RVSSDLRKDVCSFMTSI-------QADVVESLIAALYLDGGIEVAGTFVDKYWK 144
           R++   R      +           +   E+++  LYL G ++    +++K  +
Sbjct: 74  RIAKRGRNAKSYTVPKNTDPGTYSMSTSFEAVLGYLYLAGELDRLQEWMEKALE 127


>gi|238880467|gb|EEQ44105.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 778

 Score = 35.1 bits (80), Expect = 8.7,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 37/106 (34%), Gaps = 8/106 (7%)

Query: 46  LGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETC-SQVARELDLASFIRVSSDLR 104
           LGD IL  +      N   +    + ++     ++      ++A    L   I+      
Sbjct: 639 LGDAILKRISCEYFMNVSKTDPTFKWNMDDIHFINTNILFGRLAIAYRLHEGIQNEEYSA 698

Query: 105 KDVCSFMTSI------QADVVESLIAALYLDGGIEVAGTFVDKYWK 144
                 + S+        +  E+L++ LYLD   E    ++ K + 
Sbjct: 699 FIKNRLLGSLDSANVFLGNHFETLVSVLYLDS-PETCTKWMFKVYD 743


>gi|49482760|ref|YP_039984.1| hypothetical protein SAR0534 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257424644|ref|ZP_05601071.1| ribonuclease III [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257427312|ref|ZP_05603711.1| ribonuclease III [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257429948|ref|ZP_05606332.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257432650|ref|ZP_05609010.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257435554|ref|ZP_05611602.1| ribonuclease III [Staphylococcus aureus subsp. aureus M876]
 gi|282903118|ref|ZP_06311009.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus C160]
 gi|282904908|ref|ZP_06312766.1| ribonuclease III family protein [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282907858|ref|ZP_06315693.1| ribonuclease III [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282910171|ref|ZP_06317975.1| ribonuclease III [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282913363|ref|ZP_06321152.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus M899]
 gi|282918318|ref|ZP_06326055.1| ribonuclease III family protein [Staphylococcus aureus subsp.
           aureus C427]
 gi|282923280|ref|ZP_06330960.1| ribonuclease III family protein [Staphylococcus aureus subsp.
           aureus C101]
 gi|283957328|ref|ZP_06374781.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293500409|ref|ZP_06666260.1| ribonuclease III family protein [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293509354|ref|ZP_06668065.1| ribonuclease III family protein [Staphylococcus aureus subsp.
           aureus M809]
 gi|293523941|ref|ZP_06670628.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus M1015]
 gi|295427068|ref|ZP_06819704.1| ribonuclease III family protein [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297590579|ref|ZP_06949218.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus MN8]
 gi|49240889|emb|CAG39556.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257272214|gb|EEV04337.1| ribonuclease III [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257275505|gb|EEV06978.1| ribonuclease III [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257279145|gb|EEV09746.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257282065|gb|EEV12200.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284745|gb|EEV14864.1| ribonuclease III [Staphylococcus aureus subsp. aureus M876]
 gi|282314148|gb|EFB44538.1| ribonuclease III family protein [Staphylococcus aureus subsp.
           aureus C101]
 gi|282317452|gb|EFB47824.1| ribonuclease III family protein [Staphylococcus aureus subsp.
           aureus C427]
 gi|282322395|gb|EFB52717.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus M899]
 gi|282325563|gb|EFB55871.1| ribonuclease III [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282328242|gb|EFB58520.1| ribonuclease III [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282331733|gb|EFB61244.1| ribonuclease III family protein [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282596073|gb|EFC01034.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus C160]
 gi|283469823|emb|CAQ49034.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           ST398]
 gi|283790779|gb|EFC29594.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290920904|gb|EFD97965.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus M1015]
 gi|291095414|gb|EFE25675.1| ribonuclease III family protein [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291467451|gb|EFF09966.1| ribonuclease III family protein [Staphylococcus aureus subsp.
           aureus M809]
 gi|295128856|gb|EFG58486.1| ribonuclease III family protein [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297576878|gb|EFH95593.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus MN8]
 gi|312439050|gb|ADQ78121.1| ribonuclease III [Staphylococcus aureus subsp. aureus TCH60]
 gi|315193894|gb|EFU24288.1| hypothetical protein CGSSa00_12712 [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 134

 Score = 35.1 bits (80), Expect = 8.7,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 45/113 (39%), Gaps = 13/113 (11%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL--------DLA 94
           L ++GD +L   + T +      +K  +L       VSA++ +Q    L        +  
Sbjct: 17  LAYMGDAVLDQYVRTYIVLKL-KSKPNKLHQMSKKYVSAKSQAQTLEYLMEQEWFTDEEM 75

Query: 95  SFIRVSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGIEVAGTFVDKYW 143
             ++   + +    +  T +Q    +  +E++I  LYL+   E     +++  
Sbjct: 76  DILKRGRNAKSHTKAKNTDVQTYRKSSAIEAVIGFLYLEKREERLEALLNEII 128


>gi|295094034|emb|CBK83125.1| Uncharacterized protein conserved in bacteria [Coprococcus sp.
           ART55/1]
          Length = 185

 Score = 35.1 bits (80), Expect = 8.8,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 47/142 (33%), Gaps = 18/142 (12%)

Query: 32  ISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL 91
            ++  + S   L ++GD +  LLI T L    D+ +  +     + LV AE  +     L
Sbjct: 17  YTNPREYSPLSLAYIGDSVFDLLIKT-LAVTKDNKQAYKYHKEVSQLVKAEAQAGYIMYL 75

Query: 92  DLASFIRVSSDLRKDVCSFMTSIQADV-------------VESLIAALYLDGGIE---VA 135
            L + +    +         T   +                E LI  LYLD   +     
Sbjct: 76  -LDNGLLTEEEEWIYKRGRNTKTHSTAKNATVGQYRMATGFECLIGFLYLDKQYDRMFEI 134

Query: 136 GTFVDKYWKQRALKSGKFRRDA 157
              +  +      ++ +  +D 
Sbjct: 135 TRIILNHDPVETDRAEQQHKDP 156


>gi|157690878|ref|YP_001485340.1| ribonuclease III [Bacillus pumilus SAFR-032]
 gi|157679636|gb|ABV60780.1| possible ribonuclease III [Bacillus pumilus SAFR-032]
          Length = 143

 Score = 34.7 bits (79), Expect = 9.0,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 44/114 (38%), Gaps = 13/114 (11%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASF------ 96
           L ++GD I  + +   L     +    EL  R + +VSA++ + +   L    F      
Sbjct: 18  LAYMGDAIFEVYVRHHLLQTGATKP-NELHKRASKIVSAKSQAAILFTLQQQGFFTEAEE 76

Query: 97  --IRVSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGIEVAGTFVDKYWK 144
             ++   + +       T +Q    +   E+L+  L++D   E     + +  +
Sbjct: 77  AVLKRGRNAKSGTVPKNTDVQTYRYSTAFEALMGYLFIDKQDERLEELISQAIE 130


>gi|258422623|ref|ZP_05685529.1| conserved hypothetical protein [Staphylococcus aureus A9635]
 gi|257847195|gb|EEV71203.1| conserved hypothetical protein [Staphylococcus aureus A9635]
          Length = 134

 Score = 34.7 bits (79), Expect = 9.5,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 45/113 (39%), Gaps = 13/113 (11%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVAREL--------DLA 94
           L ++GD +L   + T +      +K  +L       VSA++ +Q    L        +  
Sbjct: 17  LAYMGDAVLDQYVRTYIVLKL-KSKPNKLHQMSKKYVSAKSQAQTLEYLMEKEWFTDEEM 75

Query: 95  SFIRVSSDLRKDVCSFMTSIQ----ADVVESLIAALYLDGGIEVAGTFVDKYW 143
             ++   + +    +  T +Q    +  +E++I  LYL+   E     +++  
Sbjct: 76  DILKRGRNAKSHTKAKNTDVQTYRKSSAIEAVIGFLYLEKREERLEALLNEII 128


>gi|18043980|gb|AAH19727.1| Mrpl44 protein [Mus musculus]
          Length = 115

 Score = 34.7 bits (79), Expect = 9.6,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 161 LQEWAHAKFGVTPEYKVTFRSGPDHD-PRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEV 219
           L E    +    PE ++T +SG     P + V +       A+G   +   AE+ AA   
Sbjct: 23  LVEELKKRDISAPESRLTRQSGSTTALPLYFVGLYCDRKLIAEGPGETVLVAEEEAARVA 82

Query: 220 LKRE 223
           L++ 
Sbjct: 83  LRKL 86


>gi|47097640|ref|ZP_00235160.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a
           F6854]
 gi|254900579|ref|ZP_05260503.1| YazC protein [Listeria monocytogenes J0161]
 gi|254913470|ref|ZP_05263482.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254937949|ref|ZP_05269646.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|47013984|gb|EAL04997.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258610558|gb|EEW23166.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|293591478|gb|EFF99812.1| conserved hypothetical protein [Listeria monocytogenes J2818]
          Length = 136

 Score = 34.7 bits (79), Expect = 9.7,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 41/114 (35%), Gaps = 13/114 (11%)

Query: 43  LEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLVSAETCSQVARELDLASFI----- 97
           L ++GD +    I   L       K  +L       VSA+  +   + +    F+     
Sbjct: 15  LAYMGDAVHEKFIREYLLAAG-KTKPNQLHKTATKFVSAKGQAVALKAMIAEGFLTEEED 73

Query: 98  RVSSDLRKDVCSFMTSI-------QADVVESLIAALYLDGGIEVAGTFVDKYWK 144
           R++   R      +           +   E+++  LYL G ++    +++K  +
Sbjct: 74  RIAKRGRNAKSYTVPKNTDPGTYSMSTSFEAVLGYLYLAGDVDRLQEWMEKALE 127


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.314    0.174    0.559 

Lambda     K      H
   0.267   0.0531    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,982,946,336
Number of Sequences: 14124377
Number of extensions: 247993229
Number of successful extensions: 617352
Number of sequences better than 10.0: 5516
Number of HSP's better than 10.0 without gapping: 7011
Number of HSP's successfully gapped in prelim test: 1670
Number of HSP's that attempted gapping in prelim test: 590205
Number of HSP's gapped (non-prelim): 13335
length of query: 227
length of database: 4,842,793,630
effective HSP length: 134
effective length of query: 93
effective length of database: 2,950,127,112
effective search space: 274361821416
effective search space used: 274361821416
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.1 bits)
S2: 80 (35.1 bits)