RPSBLAST alignment for GI: 254780940 and conserved domain: cd00593

>gnl|CDD|29697 cd00593, RIBOc, RIBOc. Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing, in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing.. Length = 133
 Score =  124 bits (313), Expect = 2e-29
 Identities = 52/127 (40%), Positives = 74/127 (58%), Gaps = 1/127 (0%)

Query: 21  SLLEKALTHSSIS-HSYQESYERLEFLGDRILGLLISTLLFNHFDSAKEGELSVRFNSLV 79
           SLL +ALTH S +    + + ERLEFLGD +L L+++  LF  F    EG+L+   ++LV
Sbjct: 1   SLLLEALTHPSYANEHGRFNNERLEFLGDAVLELVVTEYLFKKFPDLSEGDLTRLRSALV 60

Query: 80  SAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAALYLDGGIEVAGTFV 139
           S ET +++AREL L  ++R+     K        I ADV E+LI A+YLDGG E A  F+
Sbjct: 61  SNETLARLARELGLGKYLRLGKGEEKSGGRLRPKILADVFEALIGAIYLDGGFEAARKFL 120

Query: 140 DKYWKQR 146
            +     
Sbjct: 121 LRLLGPL 127