RPSBLAST alignment of GI: 254780940 and protein with PDBid: 1o0w

>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 Length = 252

 Score =  186 bits (473), Expect = 4e-48
 Identities = 71/223 (31%), Positives = 110/223 (49%), Gaps = 9/223 (4%)

Query: 9   LEKRIGYAFANRSLLEKALTHSSISHSY-------QESYERLEFLGDRILGLLISTLLFN 61
            +K  G  F N  LL +AL HSS ++          ES E+LEFLGD +L L +  +L+ 
Sbjct: 24  FQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEILYK 83

Query: 62  HFDSAKEGELSVRFNSLVSAETCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVES 121
            +  A+ G+L+   ++  S E  + V+R+++L  F+ +     K       SI AD  E+
Sbjct: 84  KYPEAEVGDLARVKSAAASEEVLAMVSRKMNLGKFLFLGKGEEKTGGRDRDSILADAFEA 143

Query: 122 LIAALYLDGGIEVAGTFVDKYWKQRALKSGKFR--RDAKTELQEWAHAKFGVTPEYKVTF 179
           L+AA+YLD G E      ++ ++    K  K     D KT LQE   ++  V PEY +  
Sbjct: 144 LLAAIYLDQGYEKIKELFEQEFEFYIEKIMKGEMLFDYKTALQEIVQSEHKVPPEYILVR 203

Query: 180 RSGPDHDPRFTVVVEISGLAPAQGMDCSKRAAEQVAAAEVLKR 222
               D D  F V V ++G   A G   +K+ AE+ AA    ++
Sbjct: 204 TEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEK 246