HHsearch alignment for GI: 254780941 and conserved domain: PRK00771
>PRK00771 signal recognition particle protein Srp54; Provisional.
Probab=97.23 E-value=0.00037 Score=46.80 Aligned_cols=133 Identities=21% Similarity=0.290 Sum_probs=69.0
Q ss_pred HHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHH------CCCEEEECC---CCC-------------------
Q ss_conf 7765410143324368512189983389986889999986------892021058---888-------------------
Q gi|254780941|r 4 GEITFFNEHKDFVQDNSRSGCVALVGATNAGKSTLVNRFV------GAKVSIVTH---KVQ------------------- 55 (311)
Q Consensus 4 ~e~~~~~~~~~~~~~~~ksg~VaivG~pN~GKSTL~N~l~------g~~vsivS~---k~~------------------- 55 (311)
T Consensus 81 ~eL~~llg~~~--~~~~kP~Vim~vGlqGsGKTTT~aKLA~~~kk~g~kv~lvaaDt~RpaA~eQL~~la~~~~v~~~~~ 158 (433)
T PRK00771 81 EELVKLLGEEA--EILLKPQTILLVGLQGSGKTTTAAKLARYFQKKGLKVGVICADTWRPGAYEQLKQLCEKINVPFYGD 158 (433)
T ss_pred HHHHHHHCCCC--CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99999849676--5668985899973788978999999999999779946785067883689999999998638873178
Q ss_pred -CEEEEE----EEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHH--HHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHH
Q ss_conf -602127----89997399489999879840101235753210023--45555321001100001000000012234544
Q gi|254780941|r 56 -TTRSIV----RGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSW--STIKHADIVCLVVDSHRELKVNIHDLLKEIAK 128 (311)
Q Consensus 56 -TTr~~i----~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~--~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~ 128 (311)
T Consensus 159 ~~~~dp~~i~~~a~~~~k~~DvviiDTAGRl~----~d~~Lm~El~~i~~~~~P~e~llV~Da~~GQ~a--~~~a~~F~~ 232 (433)
T PRK00771 159 PKEKDAVKIVKEGLEKLKKVDVIIVDTAGRHK----LEKDLIEEMKQIKEITKPDEVILVIDATIGQQA--SEQAKAFKE 232 (433)
T ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC----CCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHH--HHHHHHHHH
T ss_conf 89999999999999984569889997765210----409999999999877579768998654422678--999999987
Q ss_pred CCCCCEEEEEECCCHH
Q ss_conf 2872025787211010
Q gi|254780941|r 129 RSSRLILILNKIDCVK 144 (311)
Q Consensus 129 ~~~p~IiVlNKiDlv~ 144 (311)
T Consensus 233 ~~~i~gvIlTKlDgda 248 (433)
T PRK00771 233 AVGIGGIIITKLDGTA 248 (433)
T ss_pred HCCCCEEEEECCCCCC
T ss_conf 5388737997256788