HHsearch alignment for GI: 254780941 and conserved domain: PRK04004
>PRK04004 translation initiation factor IF-2; Validated.
Probab=99.80 E-value=3.1e-19 Score=144.35 Aligned_cols=157 Identities=27% Similarity=0.360 Sum_probs=104.7
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCC-CEEEE------EE------EEEE------ECCEEEEEEECCC
Q ss_conf 8512189983389986889999986892021058888-60212------78------9997------3994899998798
Q gi|254780941|r 19 NSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQ-TTRSI------VR------GIVS------EKESQIVFLDTPG 79 (311)
Q Consensus 19 ~~ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~-TTr~~------i~------gi~~------~~~~qiifvDTPG 79 (311)
T Consensus 2 ~lR~PIvtimGHVDhGKTsLLD~iR~t~V~~--~EaGGITQhIGA~~v~~~~~~~~~~~~~~~~~~~~~ipgllfiDTPG 79 (592)
T PRK04004 2 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAA--KEAGGITQHIGATEVPIDVIEKIAGPLVKRLPLKLKIPGLLFIDTPG 79 (592)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCCC--CCCCCCCCEECEEEECCCCHHHHCCCCCCCCCCCCCCCCCEEECCCC
T ss_conf 9889889997873777636899986287735--55776232306598412310110344334433234567755765996
Q ss_pred CHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHH---------------
Q ss_conf 40101235753210023455553210011000010000000122345442872025787211010---------------
Q gi|254780941|r 80 IFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK--------------- 144 (311)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~--------------- 144 (311)
T Consensus 80 He--------aFt~mR~RGa~vtDiaILVVa~~dGv~pQT~EaI~~~k~~~vP~IVAiNKiDr~~gw~~~~~~~~~~~~~ 151 (592)
T PRK04004 80 HE--------AFSNLRKRGGALADIAILVVDINEGFQPQTIESLNILKSRKTPFVVAANKIDRIPGWKSVEGAPFLESFK 151 (592)
T ss_pred HH--------HHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHH
T ss_conf 59--------9999997367457889999977888676279999999975998899986223566677676741123223
Q ss_pred --HHHH--------HHHHHHHHH-------------CCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf --4345--------788886410-------------0123343110001387426789999983
Q gi|254780941|r 145 --PERL--------LEQAEIANK-------------LVFIEKTFMVSATKGHGCDDVLNYLCST 185 (311)
Q Consensus 145 --~~~l--------~~~~~~~~~-------------~~~~~~i~~ISAk~g~Gid~L~~~L~~~ 185 (311)
T Consensus 152 ~q~~~v~~~l~~~~~~vi~~l~e~G~~~e~~~~~~d~g~~v~~VpvSA~tGeGi~dLL~~i~~L 215 (592)
T PRK04004 152 KQSERVQAELEEKLYELIGELYELGFSADRFDRVSDFTKTVAIVPVSAKTGEGIPDLLMVLAGL 215 (592)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 1738899999888888889998728763221454345881489978205689989999999999