HHsearch alignment for GI: 254780941 and conserved domain: PRK05306
>PRK05306 infB translation initiation factor IF-2; Validated.
Probab=99.82 E-value=1.2e-19 Score=146.97 Aligned_cols=159 Identities=24% Similarity=0.309 Sum_probs=117.8
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEE--E-CCEEEEEEECCCCHHHCCCCCCCCCC
Q ss_conf 36851218998338998688999998689202105888860212789997--3-99489999879840101235753210
Q gi|254780941|r 17 QDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVS--E-KESQIVFLDTPGIFNAKDSYHKLMIR 93 (311)
Q Consensus 17 ~~~~ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~--~-~~~qiifvDTPG~~~~~~~l~~~~~~ 93 (311)
T Consensus 336 ~~~~r~pvvt~mghvdhgkt~lld~~r~~~v~~~-e~ggitq~i--ga~~v~~~~~~~itf~dtpgh--------~af~~ 404 (839)
T PRK05306 336 DLVPRPPVVTIMGHVDHGKTSLLDAIRKTKVAAG-EAGGITQHI--GAYQVETENGKKITFLDTPGH--------EAFTA 404 (839)
T ss_pred HCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCC-CCCCCCCEE--EEEEEEECCCCEEEEECCCCH--------HHHHH
T ss_conf 0566898898857746773148999862875355-678755222--349999569987998558855--------88999
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHH--HHHHHHHHHH----HHHCCCCCCCCCC
Q ss_conf 023455553210011000010000000122345442872025787211010--4345788886----4100123343110
Q gi|254780941|r 94 LSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK--PERLLEQAEI----ANKLVFIEKTFMV 167 (311)
Q Consensus 94 ~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~--~~~l~~~~~~----~~~~~~~~~i~~I 167 (311)
T Consensus 405 mr~rga~~tdi~ilvvaaddgv~pqt~eai~~~~~a~vp~ivaink~d~~~a~~~~v~~~l~~~~~~~e~~gg~~~~v~~ 484 (839)
T PRK05306 405 MRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELTEYGLVPEEWGGDTIFVPV 484 (839)
T ss_pred HHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHCCCCEEEEEE
T ss_conf 98635765436999997777756778999999997499889997404678898899999999849864542894489981
Q ss_pred CCCCCCCHHHHHHHHHHHC
Q ss_conf 0013874267899999836
Q gi|254780941|r 168 SATKGHGCDDVLNYLCSTL 186 (311)
Q Consensus 168 SAk~g~Gid~L~~~L~~~l 186 (311)
T Consensus 485 sa~~~~~~~~l~e~i~l~a 503 (839)
T PRK05306 485 SAKTGEGIDELLEAILLQA 503 (839)
T ss_pred EECCCCCHHHHHHHHHHHH
T ss_conf 5157887899999999876