HHsearch alignment for GI: 254780941 and conserved domain: PRK05703
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=98.34 E-value=1.6e-07 Score=68.54 Aligned_cols=123 Identities=26% Similarity=0.385 Sum_probs=69.3
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHH-------CC-CEEEECC---CCC-----CEEEEEEEE----E-----------EE
Q ss_conf 8512189983389986889999986-------89-2021058---888-----602127899----9-----------73
Q gi|254780941|r 19 NSRSGCVALVGATNAGKSTLVNRFV-------GA-KVSIVTH---KVQ-----TTRSIVRGI----V-----------SE 67 (311)
Q Consensus 19 ~~ksg~VaivG~pN~GKSTL~N~l~-------g~-~vsivS~---k~~-----TTr~~i~gi----~-----------~~ 67 (311)
T Consensus 207 ~~~~~vvalVGPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~DtyRigA~eQLk~Ya~ilgvp~~v~~~~~~l~~al~~~ 286 (412)
T PRK05703 207 LEQGGVVALVGPTGVGKTTTLAKLAARYALEEGKDKVALITLDTYRIGAVEQLKTYAKIMGIPVKVAYDPKELAKALEQL 286 (412)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHH
T ss_conf 45673699988888756769999999999972998179998376777799999999997197379847999999999871
Q ss_pred CCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHH
Q ss_conf 994899998798401012357532100234555532100110000100000001223454428720257872110104
Q gi|254780941|r 68 KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKP 145 (311)
Q Consensus 68 ~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~ 145 (311)
T Consensus 287 ~~~dlILIDTaG~s-~~d~~~~~eL~~~~~~~~~~-~~~LVlsat~~~-~dl~~i~~~f~~~~~-~~lI~TKlDEt~~ 360 (412)
T PRK05703 287 ANCDLILIDTAGRS-QRDPRLISELKALIENSKPI-DVYLVLSATTKY-RDLKDIVKHFSRLPL-DGLILTKLDETSS 360 (412)
T ss_pred CCCCEEEEECCCCC-CCCHHHHHHHHHHHHHCCCC-CEEEEECCCCCH-HHHHHHHHHHCCCCC-CEEEEEEECCCCC
T ss_conf 58997999689889-78999999999998624887-189997598998-999999998467999-8799971128998