HHsearch alignment for GI: 254780941 and conserved domain: PRK06995
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=98.24 E-value=4.4e-07 Score=65.71 Aligned_cols=116 Identities=23% Similarity=0.381 Sum_probs=67.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHH-------C-CCEEEECCCCCCEE----------EEEEEE---------------EEE
Q ss_conf 12189983389986889999986-------8-92021058888602----------127899---------------973
Q gi|254780941|r 21 RSGCVALVGATNAGKSTLVNRFV-------G-AKVSIVTHKVQTTR----------SIVRGI---------------VSE 67 (311)
Q Consensus 21 ksg~VaivG~pN~GKSTL~N~l~-------g-~~vsivS~k~~TTr----------~~i~gi---------------~~~ 67 (311)
T Consensus 175 ~ggV~alVGPTGVGKTTTiAKLAAr~~l~~g~~kVaLIT~--DTYRIgAvEQLktYa~IlgvPv~vv~~~~eL~~aL~~l 252 (404)
T PRK06995 175 RGGVFALVGPTGVGKTTTTAKLAARCVMRHGASKVALLTT--DSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALAEL 252 (404)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEC--CCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHH
T ss_conf 4755898668887637589999999999838983799976--87547899999999987595599959999999999970
Q ss_pred CCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHH---HHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHH
Q ss_conf 9948999987984010123575321002345555---3210011000010000000122345442872025787211010
Q gi|254780941|r 68 KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKH---ADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK 144 (311)
Q Consensus 68 ~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~---aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~ 144 (311)
T Consensus 253 ~~~dlILIDTaGrs-~rD~---~~~e~l-~~l~~~~~~~~~~LVLsat~~~-~dl~~i~~~f~~~~-~~~~I~TKLDEt~ 325 (404)
T PRK06995 253 RNKHIVLIDTVGMS-QRDR---MVSEQI-AMLHGAGAPVQRLLLLNATSHG-DTLNEVVQAYRGPG-LAGCILTKLDEAA 325 (404)
T ss_pred CCCCEEEEECCCCC-CCCH---HHHHHH-HHHHHCCCCCEEEEEECCCCCH-HHHHHHHHHHCCCC-CCEEEEECCCCCC
T ss_conf 89999998099989-7688---899999-9997357885289997798999-99999999844699-9839983040679
Q ss_pred H
Q ss_conf 4
Q gi|254780941|r 145 P 145 (311)
Q Consensus 145 ~ 145 (311)
T Consensus 326 ~ 326 (404)
T PRK06995 326 S 326 (404)
T ss_pred C
T ss_conf 7