HHsearch alignment for GI: 254780941 and conserved domain: PRK12724

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional.
Probab=98.04  E-value=1.6e-05  Score=55.57  Aligned_cols=121  Identities=21%  Similarity=0.277  Sum_probs=66.4

Q ss_pred             CEEEEEECCCCCCHHHHHHHHH-------CCCEEEEC-CC--CC-----CEEEEEEE-----EE---------EECCEEE
Q ss_conf             2189983389986889999986-------89202105-88--88-----60212789-----99---------7399489
Q gi|254780941|r   22 SGCVALVGATNAGKSTLVNRFV-------GAKVSIVT-HK--VQ-----TTRSIVRG-----IV---------SEKESQI   72 (311)
Q Consensus        22 sg~VaivG~pN~GKSTL~N~l~-------g~~vsivS-~k--~~-----TTr~~i~g-----i~---------~~~~~qi   72 (311)
T Consensus       223 ~kvi~lVGPTGVGKTTTiAKLAA~~~l~~~kkVaLIT~DTYRIgAvEQLktYa~Il~iPv~vv~~~~el~~al~~~~~Dl  302 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL  302 (432)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHCCCCE
T ss_conf             62999989999888999999999999974992799952665377999999999985994599518999999998569999


Q ss_pred             EEEECCCCHHHCCCCCCCCCCHHHHHHHHH-H-HHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHH
Q ss_conf             999879840101235753210023455553-2-100110000100000001223454428720257872110104
Q gi|254780941|r   73 VFLDTPGIFNAKDSYHKLMIRLSWSTIKHA-D-IVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKP  145 (311)
Q Consensus        73 ifvDTPG~~~~~~~l~~~~~~~~~~~l~~a-D-iil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~  145 (311)
T Consensus       303 ILIDTAGrS-~rd~~~~~eL~~ll~~~~~~~~ie~~LVLSaTtk~-~dl~~ii~~f~~l~~-~~lIfTKLDET~s  374 (432)
T PRK12724        303 ILIDTAGYS-HRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY-HHTLTVLKAYESLNY-RRILLTKLDEADF  374 (432)
T ss_pred             EEEECCCCC-CCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCH-HHHHHHHHHHCCCCC-CEEEEEECCCCCC
T ss_conf             999299989-78999999999999863667885179999788998-999999998426999-8499971227798