HHsearch alignment for GI: 254780941 and conserved domain: PRK12724
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional.
Probab=98.04 E-value=1.6e-05 Score=55.57 Aligned_cols=121 Identities=21% Similarity=0.277 Sum_probs=66.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHH-------CCCEEEEC-CC--CC-----CEEEEEEE-----EE---------EECCEEE
Q ss_conf 2189983389986889999986-------89202105-88--88-----60212789-----99---------7399489
Q gi|254780941|r 22 SGCVALVGATNAGKSTLVNRFV-------GAKVSIVT-HK--VQ-----TTRSIVRG-----IV---------SEKESQI 72 (311)
Q Consensus 22 sg~VaivG~pN~GKSTL~N~l~-------g~~vsivS-~k--~~-----TTr~~i~g-----i~---------~~~~~qi 72 (311)
T Consensus 223 ~kvi~lVGPTGVGKTTTiAKLAA~~~l~~~kkVaLIT~DTYRIgAvEQLktYa~Il~iPv~vv~~~~el~~al~~~~~Dl 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHCCCCE
T ss_conf 62999989999888999999999999974992799952665377999999999985994599518999999998569999
Q ss_pred EEEECCCCHHHCCCCCCCCCCHHHHHHHHH-H-HHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHH
Q ss_conf 999879840101235753210023455553-2-100110000100000001223454428720257872110104
Q gi|254780941|r 73 VFLDTPGIFNAKDSYHKLMIRLSWSTIKHA-D-IVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKP 145 (311)
Q Consensus 73 ifvDTPG~~~~~~~l~~~~~~~~~~~l~~a-D-iil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~ 145 (311)
T Consensus 303 ILIDTAGrS-~rd~~~~~eL~~ll~~~~~~~~ie~~LVLSaTtk~-~dl~~ii~~f~~l~~-~~lIfTKLDET~s 374 (432)
T PRK12724 303 ILIDTAGYS-HRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY-HHTLTVLKAYESLNY-RRILLTKLDEADF 374 (432)
T ss_pred EEEECCCCC-CCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCH-HHHHHHHHHHCCCCC-CEEEEEECCCCCC
T ss_conf 999299989-78999999999999863667885179999788998-999999998426999-8499971227798