HHsearch alignment for GI: 254780941 and conserved domain: TIGR00231

>TIGR00231 small_GTP small GTP-binding protein domain; InterPro: IPR005225 Proteins with a small GTP-binding domain include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others . In some proteins the domain occurs more than once. Among them there is a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.; GO: 0005525 GTP binding.
Probab=99.56  E-value=1.9e-14  Score=113.33  Aligned_cols=162  Identities=28%  Similarity=0.367  Sum_probs=132.0

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCC--CCEEEEEEEEEEECC-----------EEEEEEECCCC--HHHCCC
Q ss_conf             218998338998688999998689202105888--860212789997399-----------48999987984--010123
Q gi|254780941|r   22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKV--QTTRSIVRGIVSEKE-----------SQIVFLDTPGI--FNAKDS   86 (311)
Q Consensus        22 sg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~--~TTr~~i~gi~~~~~-----------~qiifvDTPG~--~~~~~~   86 (311)
T Consensus         3 ~~~~~~~g~~~~Gk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~~~~~~d~~G~~~~~~~~~   82 (186)
T TIGR00231         3 DIKIGIVGDPNVGKSTLLNRLLGNKGSITESGPTDGTTRDYVTESIEEDGKTITGATFQWGYKFNLLDTPGLHRQEDYDA   82 (186)
T ss_pred             CEEEEEEECCCCCHHHHHHHHHHCCCCEEECCCCCCCCHHHHEEEEEECCEEEEEEEEECCEEEEEEECCCCHHHHHHHH
T ss_conf             50589973477660455544541012001023233320000001134558023434310242789862577113555544


Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHH-----HHHHHHHHHHHCCCC
Q ss_conf             575321002345555321001100001000000012234544287202578721101043-----457888864100123
Q gi|254780941|r   87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE-----RLLEQAEIANKLVFI  161 (311)
Q Consensus        87 l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~-----~l~~~~~~~~~~~~~  161 (311)
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  162 (186)
T TIGR00231        83 LRRLYYPEVLSSLEVLDLVILVLDVEDGLEKDTKEIIHHADKYGVPILLVGNKIDLKDEKPGYFVDLKPHLASLFAKLNG  162 (186)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEHHHHHHHHHHHHCC
T ss_conf             54332234454443333333222111001025677875322127416998513365546754010000345555554236


Q ss_pred             CC-CCCCCCCCCCCHHHHHHHHH
Q ss_conf             34-31100013874267899999
Q gi|254780941|r  162 EK-TFMVSATKGHGCDDVLNYLC  183 (311)
Q Consensus       162 ~~-i~~ISAk~g~Gid~L~~~L~  183 (311)
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~  185 (186)
T TIGR00231       163 EPHFIPLSAETGKGIDSLFGLVE  185 (186)
T ss_pred             CCCEEECCHHHHCCHHHHHHHHC
T ss_conf             64011110011100455666542