HHsearch alignment for GI: 254780941 and conserved domain: TIGR00231
>TIGR00231 small_GTP small GTP-binding protein domain; InterPro: IPR005225 Proteins with a small GTP-binding domain include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others . In some proteins the domain occurs more than once. Among them there is a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.; GO: 0005525 GTP binding.
Probab=99.56 E-value=1.9e-14 Score=113.33 Aligned_cols=162 Identities=28% Similarity=0.367 Sum_probs=132.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCC--CCEEEEEEEEEEECC-----------EEEEEEECCCC--HHHCCC
Q ss_conf 218998338998688999998689202105888--860212789997399-----------48999987984--010123
Q gi|254780941|r 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKV--QTTRSIVRGIVSEKE-----------SQIVFLDTPGI--FNAKDS 86 (311)
Q Consensus 22 sg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~--~TTr~~i~gi~~~~~-----------~qiifvDTPG~--~~~~~~ 86 (311)
T Consensus 3 ~~~~~~~g~~~~Gk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~~~~~~d~~G~~~~~~~~~ 82 (186)
T TIGR00231 3 DIKIGIVGDPNVGKSTLLNRLLGNKGSITESGPTDGTTRDYVTESIEEDGKTITGATFQWGYKFNLLDTPGLHRQEDYDA 82 (186)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHCCCCEEECCCCCCCCHHHHEEEEEECCEEEEEEEEECCEEEEEEECCCCHHHHHHHH
T ss_conf 50589973477660455544541012001023233320000001134558023434310242789862577113555544
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHH-----HHHHHHHHHHHCCCC
Q ss_conf 575321002345555321001100001000000012234544287202578721101043-----457888864100123
Q gi|254780941|r 87 YHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPE-----RLLEQAEIANKLVFI 161 (311)
Q Consensus 87 l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~-----~l~~~~~~~~~~~~~ 161 (311)
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (186)
T TIGR00231 83 LRRLYYPEVLSSLEVLDLVILVLDVEDGLEKDTKEIIHHADKYGVPILLVGNKIDLKDEKPGYFVDLKPHLASLFAKLNG 162 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEHHHHHHHHHHHHCC
T ss_conf 54332234454443333333222111001025677875322127416998513365546754010000345555554236
Q ss_pred CC-CCCCCCCCCCCHHHHHHHHH
Q ss_conf 34-31100013874267899999
Q gi|254780941|r 162 EK-TFMVSATKGHGCDDVLNYLC 183 (311)
Q Consensus 162 ~~-i~~ISAk~g~Gid~L~~~L~ 183 (311)
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~ 185 (186)
T TIGR00231 163 EPHFIPLSAETGKGIDSLFGLVE 185 (186)
T ss_pred CCCEEECCHHHHCCHHHHHHHHC
T ss_conf 64011110011100455666542