HHsearch alignment for GI: 254780941 and conserved domain: TIGR00491
>TIGR00491 aIF-2 translation initiation factor aIF-2; InterPro: IPR004544 Initiation factor 2 (IF-2) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 Kd which contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Some members of this family undergo protein self splicing that involves a post-translational excision of the intein followed by peptide ligation.; GO: 0003743 translation initiation factor activity, 0005525 GTP binding, 0006413 translational initiation, 0005622 intracellular.
Probab=99.54 E-value=7.6e-15 Score=115.91 Aligned_cols=142 Identities=23% Similarity=0.295 Sum_probs=94.9
Q ss_pred CCHHHHHHHHHCCCEEEECCCCC-CEEE---------EEEEEE-----------EECCEEEEEEECCCCHHHCCCCCCCC
Q ss_conf 86889999986892021058888-6021---------278999-----------73994899998798401012357532
Q gi|254780941|r 33 AGKSTLVNRFVGAKVSIVTHKVQ-TTRS---------IVRGIV-----------SEKESQIVFLDTPGIFNAKDSYHKLM 91 (311)
Q Consensus 33 ~GKSTL~N~l~g~~vsivS~k~~-TTr~---------~i~gi~-----------~~~~~qiifvDTPG~~~~~~~l~~~~ 91 (311)
T Consensus 561 vhnTTLLDkIRks~Vv--~kEAGgiTQhiGAsevP~dVI~~ic~Dl~K~f~i~~~iPG--LLfIDTPG-HeaFt~LRkRG 635 (1145)
T TIGR00491 561 VHNTTLLDKIRKSAVV--KKEAGGITQHIGASEVPLDVIKKICGDLLKKFKIKLKIPG--LLFIDTPG-HEAFTNLRKRG 635 (1145)
T ss_pred EECCCCCCCCCCCCEE--EECCCCCCEECCCEECCHHHHHHHCHHHHHCEEEEEECCE--EEEEECCC-CHHHHCCCCCC
T ss_conf 8514331000334013--2477884010066654668986513212114025786580--15860786-23442201001
Q ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHH----HH---------------------
Q ss_conf 10023455553210011000010000000122345442872025787211010----43---------------------
Q gi|254780941|r 92 IRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVK----PE--------------------- 146 (311)
Q Consensus 92 ~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~----~~--------------------- 146 (311)
T Consensus 636 -------GAlADlAILvVDInEGfkpQT~EA~~ILr~~ktPFvVAANKIDrI~GW~~~e~~~fl~~~~kq~~~~~~~l~~ 708 (1145)
T TIGR00491 636 -------GALADLAILVVDINEGFKPQTEEALNILRSFKTPFVVAANKIDRIPGWKSHEGRPFLESYEKQEQRVKQNLDK 708 (1145)
T ss_pred -------CHHHHHHEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHH
T ss_conf -------0363011013410269840348999996128987289503305588964548851666654111678866887
Q ss_pred HHHHHHHH--HHHC----------CCCC---CCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 45788886--4100----------1233---431100013874267899999836
Q gi|254780941|r 147 RLLEQAEI--ANKL----------VFIE---KTFMVSATKGHGCDDVLNYLCSTL 186 (311)
Q Consensus 147 ~l~~~~~~--~~~~----------~~~~---~i~~ISAk~g~Gid~L~~~L~~~l 186 (311)
T Consensus 709 ~~y~lv~~kPL~e~GF~AerFdRv~Dft~tVaviPvSA~tGEGIpelL~~l~GLA 763 (1145)
T TIGR00491 709 KVYNLVIKKPLAEEGFEAERFDRVRDFTRTVAVIPVSAVTGEGIPELLLILAGLA 763 (1145)
T ss_pred HHHHHHHCCCHHHCCCCCCCCCCEECEEEEEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 7898873022112588712255200001136898866567897489999998888