HHsearch alignment for GI: 254780941 and conserved domain: TIGR00993
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains; InterPro: IPR005690 Two integral outer envelope GTPases, Toc34 and Toc86, are proposed to regulate the recognition and translocation of nuclear-encoded preproteins during the early stages of protein import into chloroplasts. The long precursor of the 86K protein is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation . The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0009707 chloroplast outer membrane.
Probab=98.63 E-value=6.5e-08 Score=71.07 Aligned_cols=91 Identities=26% Similarity=0.366 Sum_probs=66.3
Q ss_pred CCCCC-CEEEEEECCCCCCHHHHHHHHHCCCEEEEC-CCCCCEE-EEEEEEEEECCEEEEEEECCCCHHH--CCCCCCCC
Q ss_conf 36851-218998338998688999998689202105-8888602-1278999739948999987984010--12357532
Q gi|254780941|r 17 QDNSR-SGCVALVGATNAGKSTLVNRFVGAKVSIVT-HKVQTTR-SIVRGIVSEKESQIVFLDTPGIFNA--KDSYHKLM 91 (311)
Q Consensus 17 ~~~~k-sg~VaivG~pN~GKSTL~N~l~g~~vsivS-~k~~TTr-~~i~gi~~~~~~qiifvDTPG~~~~--~~~l~~~~ 91 (311)
T Consensus 118 ~d~l~FSl~IlVLGK~GVGKSATINSI~~e~~~s~dAf~~~T~~V~~i~G~--V~Gv~i~viDTPGL~~s~~dQs~N~K~ 195 (772)
T TIGR00993 118 QDELDFSLNILVLGKSGVGKSATINSIFGEVKASIDAFGLGTTSVQEIEGL--VDGVKIRVIDTPGLKSSASDQSKNEKI 195 (772)
T ss_pred CCCHHHEEEEEEECCCCCCCCHHHHHHHCCEEEEEECCCCCCCEEEEEEEE--EEEEEEEEEECCCCCHHHHHHHHCHHH
T ss_conf 862130114345515687720101111235001201014666447766667--710799997578875555433302068
Q ss_pred CCHHHHHHHH--HHHHCCCC
Q ss_conf 1002345555--32100110
Q gi|254780941|r 92 IRLSWSTIKH--ADIVCLVV 109 (311)
Q Consensus 92 ~~~~~~~l~~--aDiil~Vv 109 (311)
T Consensus 196 L~sVK~~~KK~PPDIVLY~D 215 (772)
T TIGR00993 196 LSSVKKLIKKNPPDIVLYVD 215 (772)
T ss_pred HHHHHHHHCCCCCCEEEEEC
T ss_conf 88888863179696698600