HHsearch alignment for GI: 254780941 and conserved domain: TIGR01393
>TIGR01393 lepA GTP-binding protein LepA; InterPro: IPR006297 LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function of the proteins in this family are unknown. ; GO: 0005525 GTP binding.
Probab=99.81 E-value=5.5e-20 Score=149.20 Aligned_cols=165 Identities=22% Similarity=0.324 Sum_probs=124.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCC---CCCE------E--------EEEEEEEE-E---CCEEEEEEECCCCHHH
Q ss_conf 99833899868899999868920210588---8860------2--------12789997-3---9948999987984010
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHK---VQTT------R--------SIVRGIVS-E---KESQIVFLDTPGIFNA 83 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k---~~TT------r--------~~i~gi~~-~---~~~qiifvDTPG~~~~ 83 (311)
T Consensus 6 FsIIAHIDHGKSTLADRlle~T-~~~s~R~m~~Q~LD~MDlERERGITIK~qaV~l~Yk~~~DGe~Y~LNLIDTPGHVDF 84 (598)
T TIGR01393 6 FSIIAHIDHGKSTLADRLLEKT-GAVSEREMREQVLDSMDLERERGITIKAQAVRLKYKVAKDGETYVLNLIDTPGHVDF 84 (598)
T ss_pred EEEEEEECCCCCHHHHHHHHHC-CCCCCHHHHHCCCCCCCEEECCCCEEECCCEEEEEEEECCCCEEEEEEECCCCCCCC
T ss_conf 6788462489324889999861-745620254305775100000582011563475337533887889964528897212
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCC--HHHHHHHHHHHHHHHCCCC
Q ss_conf 12357532100234555532100110000100000001223454428720257872110--1043457888864100123
Q gi|254780941|r 84 KDSYHKLMIRLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDC--VKPERLLEQAEIANKLVFI 161 (311)
Q Consensus 84 ~~~l~~~~~~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDl--v~~~~l~~~~~~~~~~~~~ 161 (311)
T Consensus 85 sY--------EVSRSLAACEGALL~VDA~QGvEAQT~aN~YlAlE~dLeIIPViNKIDLP~Adpe~v~~eIe~~iGld-~ 155 (598)
T TIGR01393 85 SY--------EVSRSLAACEGALLLVDAAQGVEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEVIGLD-A 155 (598)
T ss_pred CH--------HHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCC-C
T ss_conf 73--------78888887164035614103235888999988756187584778253688888589999876541889-6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
Q ss_conf 3431100013874267899999836622356896433430256
Q gi|254780941|r 162 EKTFMVSATKGHGCDDVLNYLCSTLPLAPWVYSADQISDLPMF 204 (311)
Q Consensus 162 ~~i~~ISAk~g~Gid~L~~~L~~~lpe~~~~y~~~~~Td~~~~ 204 (311)
T Consensus 156 ~~ai~~SAKtG~Gi~e~LEaIv~~vPp-----P~Gd~~DapLk 193 (598)
T TIGR01393 156 SEAILASAKTGIGIEEILEAIVKRVPP-----PKGDPDDAPLK 193 (598)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCC-----CCCCCCCCCCE
T ss_conf 430387503678889998897101810-----01138886632