HHsearch alignment for GI: 254780941 and conserved domain: TIGR03156

>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.95  E-value=6.1e-28  Score=200.63  Aligned_cols=156  Identities=28%  Similarity=0.403  Sum_probs=119.2

Q ss_pred             CCE--EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEEC-CEEEEEEECCCCHHHCCCCCCCCCCHH--
Q ss_conf             121--899833899868899999868920210588886021278999739-948999987984010123575321002--
Q gi|254780941|r   21 RSG--CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK-ESQIVFLDTPGIFNAKDSYHKLMIRLS--   95 (311)
Q Consensus        21 ksg--~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~-~~qiifvDTPG~~~~~~~l~~~~~~~~--   95 (311)
T Consensus       186 ~~~~p~ValVGYTNAGKSTL~n~Lt~~~~~-~~d~lFaTLd~t~r~~~l~~~~~~ll~DTVGFI~---~LP~~Li~aF~s  261 (351)
T TIGR03156       186 RAGVPTVALVGYTNAGKSTLFNALTGADVY-AADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIR---DLPHELVAAFRA  261 (351)
T ss_pred             HCCCCEEEEECCCCCCHHHHHHHHHHCCCC-CCCCCEEECCCCCCEEECCCCCEEEEEECCCHHH---HCCHHHHHHHHH
T ss_conf             349976999667887789999998517764-1034313536732048879997699981500563---088679999999


Q ss_pred             -HHHHHHHHHHCCCCHHHHHHHCC----HHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             -34555532100110000100000----0012234544287202578721101043457888864100123343110001
Q gi|254780941|r   96 -WSTIKHADIVCLVVDSHRELKVN----IHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSAT  170 (311)
Q Consensus        96 -~~~l~~aDiil~VvDa~~~~~~~----~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk  170 (311)
T Consensus       262 TLee~~~aDlllhVvD~S~~~~~~~~~~v~~~L~elg~~~~p~i~V~NKiD~~~~~~~~~~~----~--~~~~~v~ISA~  335 (351)
T TIGR03156       262 TLEEVREADLLLHVVDASDPDREEQIEAVEEVLEELGAEDIPQLLVYNKIDLLDEPRIERLE----E--GYPEAVFVSAK  335 (351)
T ss_pred             HHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECHHCCCHHHHHHHH----H--CCCCEEEEECC
T ss_conf             99999859899998058884789999999999997699999889999670158957789987----3--79987999689


Q ss_pred             CCCCHHHHHHHHHHHC
Q ss_conf             3874267899999836
Q gi|254780941|r  171 KGHGCDDVLNYLCSTL  186 (311)
Q Consensus       171 ~g~Gid~L~~~L~~~l  186 (311)
T Consensus       336 ~g~gi~~L~~~I~~~L  351 (351)
T TIGR03156       336 TGEGLDLLLEAIAERL  351 (351)
T ss_pred             CCCCHHHHHHHHHHHC
T ss_conf             9989999999999559