HHsearch alignment for GI: 254780941 and conserved domain: TIGR03156
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.95 E-value=6.1e-28 Score=200.63 Aligned_cols=156 Identities=28% Similarity=0.403 Sum_probs=119.2
Q ss_pred CCE--EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEEC-CEEEEEEECCCCHHHCCCCCCCCCCHH--
Q ss_conf 121--899833899868899999868920210588886021278999739-948999987984010123575321002--
Q gi|254780941|r 21 RSG--CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK-ESQIVFLDTPGIFNAKDSYHKLMIRLS-- 95 (311)
Q Consensus 21 ksg--~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~-~~qiifvDTPG~~~~~~~l~~~~~~~~-- 95 (311)
T Consensus 186 ~~~~p~ValVGYTNAGKSTL~n~Lt~~~~~-~~d~lFaTLd~t~r~~~l~~~~~~ll~DTVGFI~---~LP~~Li~aF~s 261 (351)
T TIGR03156 186 RAGVPTVALVGYTNAGKSTLFNALTGADVY-AADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIR---DLPHELVAAFRA 261 (351)
T ss_pred HCCCCEEEEECCCCCCHHHHHHHHHHCCCC-CCCCCEEECCCCCCEEECCCCCEEEEEECCCHHH---HCCHHHHHHHHH
T ss_conf 349976999667887789999998517764-1034313536732048879997699981500563---088679999999
Q ss_pred -HHHHHHHHHHCCCCHHHHHHHCC----HHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf -34555532100110000100000----0012234544287202578721101043457888864100123343110001
Q gi|254780941|r 96 -WSTIKHADIVCLVVDSHRELKVN----IHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSAT 170 (311)
Q Consensus 96 -~~~l~~aDiil~VvDa~~~~~~~----~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk 170 (311)
T Consensus 262 TLee~~~aDlllhVvD~S~~~~~~~~~~v~~~L~elg~~~~p~i~V~NKiD~~~~~~~~~~~----~--~~~~~v~ISA~ 335 (351)
T TIGR03156 262 TLEEVREADLLLHVVDASDPDREEQIEAVEEVLEELGAEDIPQLLVYNKIDLLDEPRIERLE----E--GYPEAVFVSAK 335 (351)
T ss_pred HHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECHHCCCHHHHHHHH----H--CCCCEEEEECC
T ss_conf 99999859899998058884789999999999997699999889999670158957789987----3--79987999689
Q ss_pred CCCCHHHHHHHHHHHC
Q ss_conf 3874267899999836
Q gi|254780941|r 171 KGHGCDDVLNYLCSTL 186 (311)
Q Consensus 171 ~g~Gid~L~~~L~~~l 186 (311)
T Consensus 336 ~g~gi~~L~~~I~~~L 351 (351)
T TIGR03156 336 TGEGLDLLLEAIAERL 351 (351)
T ss_pred CCCCHHHHHHHHHHHC
T ss_conf 9989999999999559