HHsearch alignment for GI: 254780941 and conserved domain: TIGR03348

>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.11  E-value=1.2e-05  Score=56.30  Aligned_cols=115  Identities=19%  Similarity=0.267  Sum_probs=59.5

Q ss_pred             EEEEECCCCCCHHHHHHHH-HCCCEEEECCCCCCEEEEEEEEE---EEC---CEEEEEEECCCCHHHCCCCCCCCCCHHH
Q ss_conf             8998338998688999998-68920210588886021278999---739---9489999879840101235753210023
Q gi|254780941|r   24 CVALVGATNAGKSTLVNRF-VGAKVSIVTHKVQTTRSIVRGIV---SEK---ESQIVFLDTPGIFNAKDSYHKLMIRLSW   96 (311)
Q Consensus        24 ~VaivG~pN~GKSTL~N~l-~g~~vsivS~k~~TTr~~i~gi~---~~~---~~qiifvDTPG~~~~~~~l~~~~~~~~~   96 (311)
T Consensus       113 WYlviG~~gsGKTt~l~~Sgl~fPl~~---~--~~~~~~~g~ggt~~cdwwft~~AVliDtaGry~~Q~~~~-~~d~~~W  186 (1169)
T TIGR03348       113 WYLVIGPPGSGKTTLLQNSGLKFPLAE---R--LGAAALRGVGGTRNCDWWFTDEAVLIDTAGRYTTQDSDP-EEDAAAW  186 (1169)
T ss_pred             EEEEECCCCCCHHHHHHHCCCCCCCCC---C--CCHHHCCCCCCCCCCCEEEECCEEEEECCCCEECCCCCC-HHHHHHH
T ss_conf             589978999866899983799887741---0--011221588998555716527879994797602688864-0018999


Q ss_pred             HHH----------HHHHHHCCCCHHHHHHHCCHH---HHHHHHH----------HCCCCCEEEEEECCCHH
Q ss_conf             455----------553210011000010000000---1223454----------42872025787211010
Q gi|254780941|r   97 STI----------KHADIVCLVVDSHRELKVNIH---DLLKEIA----------KRSSRLILILNKIDCVK  144 (311)
Q Consensus        97 ~~l----------~~aDiil~VvDa~~~~~~~~~---~il~~l~----------~~~~p~IiVlNKiDlv~  144 (311)
T Consensus       187 ~~fL~lLkk~R~r~piNGvil~is~~~Ll~~~~~~~~~~a~~lr~Rl~El~~~lg~~~PVYv~~TK~Dll~  257 (1169)
T TIGR03348       187 LGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA  257 (1169)
T ss_pred             HHHHHHHHHCCCCCCCCEEEEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHH
T ss_conf             99999998648989987689997899974789999999999999999999998299877599866401230