HHsearch alignment for GI: 254780941 and conserved domain: TIGR03348
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.11 E-value=1.2e-05 Score=56.30 Aligned_cols=115 Identities=19% Similarity=0.267 Sum_probs=59.5
Q ss_pred EEEEECCCCCCHHHHHHHH-HCCCEEEECCCCCCEEEEEEEEE---EEC---CEEEEEEECCCCHHHCCCCCCCCCCHHH
Q ss_conf 8998338998688999998-68920210588886021278999---739---9489999879840101235753210023
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRF-VGAKVSIVTHKVQTTRSIVRGIV---SEK---ESQIVFLDTPGIFNAKDSYHKLMIRLSW 96 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l-~g~~vsivS~k~~TTr~~i~gi~---~~~---~~qiifvDTPG~~~~~~~l~~~~~~~~~ 96 (311)
T Consensus 113 WYlviG~~gsGKTt~l~~Sgl~fPl~~---~--~~~~~~~g~ggt~~cdwwft~~AVliDtaGry~~Q~~~~-~~d~~~W 186 (1169)
T TIGR03348 113 WYLVIGPPGSGKTTLLQNSGLKFPLAE---R--LGAAALRGVGGTRNCDWWFTDEAVLIDTAGRYTTQDSDP-EEDAAAW 186 (1169)
T ss_pred EEEEECCCCCCHHHHHHHCCCCCCCCC---C--CCHHHCCCCCCCCCCCEEEECCEEEEECCCCEECCCCCC-HHHHHHH
T ss_conf 589978999866899983799887741---0--011221588998555716527879994797602688864-0018999
Q ss_pred HHH----------HHHHHHCCCCHHHHHHHCCHH---HHHHHHH----------HCCCCCEEEEEECCCHH
Q ss_conf 455----------553210011000010000000---1223454----------42872025787211010
Q gi|254780941|r 97 STI----------KHADIVCLVVDSHRELKVNIH---DLLKEIA----------KRSSRLILILNKIDCVK 144 (311)
Q Consensus 97 ~~l----------~~aDiil~VvDa~~~~~~~~~---~il~~l~----------~~~~p~IiVlNKiDlv~ 144 (311)
T Consensus 187 ~~fL~lLkk~R~r~piNGvil~is~~~Ll~~~~~~~~~~a~~lr~Rl~El~~~lg~~~PVYv~~TK~Dll~ 257 (1169)
T TIGR03348 187 LGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHHHCCCCCCCCEEEEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHH
T ss_conf 99999998648989987689997899974789999999999999999999998299877599866401230