HHsearch alignment for GI: 254780941 and conserved domain: TIGR03596
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.77 E-value=7.6e-09 Score=77.08 Aligned_cols=93 Identities=19% Similarity=0.180 Sum_probs=72.7
Q ss_pred CHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 00234555532100110000100000001223454428720257872110104345788886410012334311000138
Q gi|254780941|r 93 RLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKG 172 (311)
Q Consensus 93 ~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g 172 (311)
T Consensus 13 ~~l~~~l~~~DvileV~DAR~Pl~~~n~~l~~~~--~~K~~ilvlNK~DL~~~~~~~~w~~~~~~~~--~~~~~~sa~~~ 88 (276)
T TIGR03596 13 REIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKPRLIVLNKADLADPAVTKQWLKYFEQKG--IKALAINAKKG 88 (276)
T ss_pred HHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHH--CCCCEEEEEECCCCCCHHHHHHHHHHHHHCC--CCEEEEHHCCC
T ss_conf 9999998759999999867788786897599986--6996799973434599999999999998439--91898643074
Q ss_pred CCHHHHHHHHHHHCCCC
Q ss_conf 74267899999836622
Q gi|254780941|r 173 HGCDDVLNYLCSTLPLA 189 (311)
Q Consensus 173 ~Gid~L~~~L~~~lpe~ 189 (311)
T Consensus 89 ~~~~~l~~~~~~~~~~~ 105 (276)
T TIGR03596 89 KGVKKIIKAAKKLLKEK 105 (276)
T ss_pred CCHHHHHHHHHHHHHHH
T ss_conf 53899999999999998