HHsearch alignment for GI: 254780941 and conserved domain: cd00877
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.64 E-value=2.7e-15 Score=118.83 Aligned_cols=154 Identities=16% Similarity=0.156 Sum_probs=98.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEE--EEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf 9983389986889999986892021058888602--12789997399--4899998798401012357532100234555
Q gi|254780941|r 25 VALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR--SIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 25 VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr--~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~ 100 (311)
T Consensus 3 ivlvGd~~VGKTsli~r~~~~~f~---~~~~~Tig~~~~~~~~~~~~~~v~l~iwDtaGqe--------~~~~l~~~y~~ 71 (166)
T cd00877 3 LVLVGDGGTGKTTFVKRHLTGEFE---KKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQE--------KFGGLRDGYYI 71 (166)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC---CCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCH--------HHHHHHHHHHC
T ss_conf 999999998889999999839999---9868732556799999999979999999757871--------56668788740
Q ss_pred HHHHHCCCCHHHHHHHCC-HHHHHHHHHH--CCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf 532100110000100000-0012234544--2872025787211010434578888641001233431100013874267
Q gi|254780941|r 101 HADIVCLVVDSHRELKVN-IHDLLKEIAK--RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDD 177 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~~-~~~il~~l~~--~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid~ 177 (311)
T Consensus 72 ~a~~~ilvyDvt~~~Sf~~v~~w~~~i~~~~~~~piilVgNK~Dl~~~~~~-~~~~~~~~~~~-~~~~EtSAk~~~nV~e 149 (166)
T cd00877 72 GGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVK-AKQITFHRKKN-LQYYEISAKSNYNFEK 149 (166)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC-HHHHHHHHHCC-CEEEEECCCCCCCHHH
T ss_conf 065799843789888999999999999986899989999986217503667-99999999789-9899984589909899
Q ss_pred HHHHHHHHCCCCCC
Q ss_conf 89999983662235
Q gi|254780941|r 178 VLNYLCSTLPLAPW 191 (311)
Q Consensus 178 L~~~L~~~lpe~~~ 191 (311)
T Consensus 150 ~F~~la~~il~~~~ 163 (166)
T cd00877 150 PFLWLARKLLGNPN 163 (166)
T ss_pred HHHHHHHHHHCCCC
T ss_conf 99999999842899