HHsearch alignment for GI: 254780941 and conserved domain: cd00880
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=100.00 E-value=1.8e-35 Score=249.38 Aligned_cols=159 Identities=31% Similarity=0.398 Sum_probs=135.4
Q ss_pred EECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC-EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 8338998688999998689202105888860212789997399-489999879840101235753210023455553210
Q gi|254780941|r 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE-SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIV 105 (311)
Q Consensus 27 ivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~-~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDii 105 (311)
T Consensus 1 ivG~~N~GKStL~N~L~~~~~~~vs~~~gtT~~~~~~~~~~~~~~~i~lvDtpG~~~~~~-~~~~~~~~~~~~~~~~D~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGG-LGREREELARRVLERADLI 79 (163)
T ss_pred CCCCCCCCHHHHHHHHHCCCCCEECCCCCEECCCEEEEEEECCCCEEEEEECCCCCCCCC-HHHHHHHHHHHHHHHCCEE
T ss_conf 919799899999999958996101698998656458999954786599972798522231-0168999999999868989
Q ss_pred CCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHH---HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 0110000100000001223454428720257872110104345788---8864100123343110001387426789999
Q gi|254780941|r 106 CLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQ---AEIANKLVFIEKTFMVSATKGHGCDDVLNYL 182 (311)
Q Consensus 106 l~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~---~~~~~~~~~~~~i~~ISAk~g~Gid~L~~~L 182 (311)
T Consensus 80 l~viD~~~~~~~~~~~~l~~l~~~~~p~i~v~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~iSA~~g~gi~~L~~~i 159 (163)
T cd00880 80 LFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELREAL 159 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 99987899975566999999997197427885342067878999999999999876799859999789897999999999
Q ss_pred HHHC
Q ss_conf 9836
Q gi|254780941|r 183 CSTL 186 (311)
Q Consensus 183 ~~~l 186 (311)
T Consensus 160 ~e~L 163 (163)
T cd00880 160 IEAL 163 (163)
T ss_pred HHHC
T ss_conf 9519