HHsearch alignment for GI: 254780941 and conserved domain: cd00880

>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=100.00  E-value=1.8e-35  Score=249.38  Aligned_cols=159  Identities=31%  Similarity=0.398  Sum_probs=135.4

Q ss_pred             EECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC-EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             8338998688999998689202105888860212789997399-489999879840101235753210023455553210
Q gi|254780941|r   27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE-SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIV  105 (311)
Q Consensus        27 ivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~-~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDii  105 (311)
T Consensus         1 ivG~~N~GKStL~N~L~~~~~~~vs~~~gtT~~~~~~~~~~~~~~~i~lvDtpG~~~~~~-~~~~~~~~~~~~~~~~D~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGG-LGREREELARRVLERADLI   79 (163)
T ss_pred             CCCCCCCCHHHHHHHHHCCCCCEECCCCCEECCCEEEEEEECCCCEEEEEECCCCCCCCC-HHHHHHHHHHHHHHHCCEE
T ss_conf             919799899999999958996101698998656458999954786599972798522231-0168999999999868989


Q ss_pred             CCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHH---HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             0110000100000001223454428720257872110104345788---8864100123343110001387426789999
Q gi|254780941|r  106 CLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQ---AEIANKLVFIEKTFMVSATKGHGCDDVLNYL  182 (311)
Q Consensus       106 l~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~---~~~~~~~~~~~~i~~ISAk~g~Gid~L~~~L  182 (311)
T Consensus        80 l~viD~~~~~~~~~~~~l~~l~~~~~p~i~v~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~iSA~~g~gi~~L~~~i  159 (163)
T cd00880          80 LFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELREAL  159 (163)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHH
T ss_conf             99987899975566999999997197427885342067878999999999999876799859999789897999999999


Q ss_pred             HHHC
Q ss_conf             9836
Q gi|254780941|r  183 CSTL  186 (311)
Q Consensus       183 ~~~l  186 (311)
T Consensus       160 ~e~L  163 (163)
T cd00880         160 IEAL  163 (163)
T ss_pred             HHHC
T ss_conf             9519