HHsearch alignment for GI: 254780941 and conserved domain: cd00882
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.68 E-value=2.5e-16 Score=125.47 Aligned_cols=148 Identities=24% Similarity=0.261 Sum_probs=97.6
Q ss_pred EECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEE--CCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 83389986889999986892021058888602127899973--9948999987984010123575321002345555321
Q gi|254780941|r 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSE--KESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADI 104 (311)
Q Consensus 27 ivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~--~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDi 104 (311)
T Consensus 1 vvG~~~~GKSsl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--------~~~~~~~~~~~~~ 71 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFV-PEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERF--------RSLRRLYYRGADG 71 (157)
T ss_pred CCCCCCCCHHHHHHHHHCCCCC-CCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHH--------HHHHHHHHHHCCE
T ss_conf 9294996889999999719888-764687157899999999999999999985895115--------6789999753579
Q ss_pred HCCCCHHHHHHHCCHHH-----HHHHHHHCCCCCEEEEEECCCHHHHHHHHH--HHHHHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf 00110000100000001-----223454428720257872110104345788--88641001233431100013874267
Q gi|254780941|r 105 VCLVVDSHRELKVNIHD-----LLKEIAKRSSRLILILNKIDCVKPERLLEQ--AEIANKLVFIEKTFMVSATKGHGCDD 177 (311)
Q Consensus 105 il~VvDa~~~~~~~~~~-----il~~l~~~~~p~IiVlNKiDlv~~~~l~~~--~~~~~~~~~~~~i~~ISAk~g~Gid~ 177 (311)
T Consensus 72 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~ 150 (157)
T cd00882 72 IILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKEL-GVPYFETSAKTGENVEE 150 (157)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHCCCCCHHHHHHHHHHHC-CCEEEEECCCCCCCHHH
T ss_conf 99998658888899999999999997525898499998535615406688999999999878-98699984788839999
Q ss_pred HHHHHHH
Q ss_conf 8999998
Q gi|254780941|r 178 VLNYLCS 184 (311)
Q Consensus 178 L~~~L~~ 184 (311)
T Consensus 151 l~~~i~~ 157 (157)
T cd00882 151 LFEELAE 157 (157)
T ss_pred HHHHHHC
T ss_conf 9999859