HHsearch alignment for GI: 254780941 and conserved domain: cd01856
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.09 E-value=1.1e-10 Score=88.99 Aligned_cols=58 Identities=45% Similarity=0.584 Sum_probs=48.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCH
Q ss_conf 1218998338998688999998689202105888860212789997399489999879840
Q gi|254780941|r 21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIF 81 (311)
Q Consensus 21 ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~ 81 (311)
T Consensus 114 ~~~~v~ivG~PNVGKSSlIN~L~~~~~~~v~~~pGtTr~~~~-i~~--~~~~~liDTPGI~ 171 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQW-IKI--SPGIYLLDTPGIL 171 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCEEE-EEE--CCCEEEEECCCCC
T ss_conf 771799973798761799999748863887698985326679-996--8999999799889