HHsearch alignment for GI: 254780941 and conserved domain: cd01857
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.62 E-value=1e-15 Score=121.62 Aligned_cols=58 Identities=33% Similarity=0.487 Sum_probs=48.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHH
Q ss_conf 2189983389986889999986892021058888602127899973994899998798401
Q gi|254780941|r 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFN 82 (311)
Q Consensus 22 sg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~ 82 (311)
T Consensus 83 ~~~i~ivG~PNVGKSSlIN~L~g~k~~~v~~~PG~Tr~~~~-i~-~-~~~i~liDTPGi~~ 140 (141)
T cd01857 83 NATIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQT-IF-L-TPTITLCDCPGLVF 140 (141)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCEEE-EE-E-CCCEEEEECCCCCC
T ss_conf 62689977888669999999858866876599941576689-99-6-89999998988689