HHsearch alignment for GI: 254780941 and conserved domain: cd01857
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.46 E-value=1.7e-07 Score=68.30 Aligned_cols=79 Identities=29% Similarity=0.340 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHH--CCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 002345555321001100001000000012234544--287202578721101043457888864100123343110001
Q gi|254780941|r 93 RLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAK--RSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSAT 170 (311)
Q Consensus 93 ~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~--~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk 170 (311)
T Consensus 3 rq~~~~ie~aDvVleV~DaR~p~~s~~~~l~~~l~~~~~~Kp~ilVlNK~DL~~~~~~~~w~~~~~~~~--~~~~~~s~~ 80 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEG--IVVVFFSAL 80 (141)
T ss_pred HHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCC--CCEEEEECC
T ss_conf 899999976999999998988887689999999998438995799986500499999999999998449--948998426
Q ss_pred CCC
Q ss_conf 387
Q gi|254780941|r 171 KGH 173 (311)
Q Consensus 171 ~g~ 173 (311)
T Consensus 81 ~~~ 83 (141)
T cd01857 81 KEN 83 (141)
T ss_pred CCC
T ss_conf 776