HHsearch alignment for GI: 254780941 and conserved domain: cd01859
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.65 E-value=3.5e-16 Score=124.57 Aligned_cols=95 Identities=23% Similarity=0.212 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 00234555532100110000100000001223454428720257872110104345788886410012334311000138
Q gi|254780941|r 93 RLSWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKG 172 (311)
Q Consensus 93 ~~~~~~l~~aDiil~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g 172 (311)
T Consensus 4 r~i~~~i~~~D~il~VvDar~p~~~~~~~l~~~l~~~~K~~ilvlNK~Dl~~~~~~~~~~~~~~-~~g-~~~i~iSa~~~ 81 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPKEVLEKWKSIKE-SEG-IPVVYVSAKER 81 (156)
T ss_pred HHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHH-CCC-CCEEEEECCCC
T ss_conf 9999999879999999987889998698999999756993999977555589899999999982-899-97378701267
Q ss_pred CCHHHHHHHHHHHCCCC
Q ss_conf 74267899999836622
Q gi|254780941|r 173 HGCDDVLNYLCSTLPLA 189 (311)
Q Consensus 173 ~Gid~L~~~L~~~lpe~ 189 (311)
T Consensus 82 ~g~~~L~~~i~~~~~~~ 98 (156)
T cd01859 82 LGTKILRRTIKELAKID 98 (156)
T ss_pred CCHHHHHHHHHHHHCCC
T ss_conf 57999999999860235