HHsearch alignment for GI: 254780941 and conserved domain: cd01859
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.19 E-value=3.2e-11 Score=92.51 Aligned_cols=62 Identities=29% Similarity=0.457 Sum_probs=50.3
Q ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCC
Q ss_conf 43685121899833899868899999868920210588886021278999739948999987984
Q gi|254780941|r 16 VQDNSRSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGI 80 (311)
Q Consensus 16 ~~~~~ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~ 80 (311)
T Consensus 95 ~~~~~~~~~v~ivG~PNVGKSTLIN~L~~~~~~~v~~~pGtTr~~~~-i-~~-~~~~~liDTpGi 156 (156)
T cd01859 95 AKIDGKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQL-V-KI-TSKIYLLDTPGV 156 (156)
T ss_pred HCCCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEECCEEE-E-EE-CCCEEEEECCCC
T ss_conf 02356662899981478459899999748813777599980705599-9-97-998899989099