HHsearch alignment for GI: 254780941 and conserved domain: cd01870

>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.62  E-value=1.5e-14  Score=114.07  Aligned_cols=153  Identities=17%  Similarity=0.128  Sum_probs=95.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHH
Q ss_conf             8998338998688999998689202105888860212789997399--48999987984010123575321002345555
Q gi|254780941|r   24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKH  101 (311)
Q Consensus        24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~  101 (311)
T Consensus         3 Ki~liGd~~VGKTsli~r~~~~~F~--~~y~pTi~~~~~~~i~~~~~~v~l~iwDtaG~e--------~~~~~~~~~~~~   72 (175)
T cd01870           3 KLVIVGDGACGKTCLLIVFSKDQFP--EVYVPTVFENYVADIEVDGKQVELALWDTAGQE--------DYDRLRPLSYPD   72 (175)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCC--CCCCCCEEEEEEEEEEECCEEEEEEEEECCCCC--------CCCCCHHHHHCC
T ss_conf             9999998996699999999709899--984784368999999999999999999777661--------323240443148


Q ss_pred             HHHHCCCCHHHHHHHCCHH--HHHHHHHH--CCCCCEEEEEECCCHHHHHH-------------HHHHHHHHHCCCCCCC
Q ss_conf             3210011000010000000--12234544--28720257872110104345-------------7888864100123343
Q gi|254780941|r  102 ADIVCLVVDSHRELKVNIH--DLLKEIAK--RSSRLILILNKIDCVKPERL-------------LEQAEIANKLVFIEKT  164 (311)
Q Consensus       102 aDiil~VvDa~~~~~~~~~--~il~~l~~--~~~p~IiVlNKiDlv~~~~l-------------~~~~~~~~~~~~~~~i  164 (311)
T Consensus        73 a~~~ilvydi~~~~Sf~~~~~~w~~~i~~~~~~~piilVgnK~DL~~~~~~~~~~~~~~~~~V~~~eg~~~a~~~~~~~f  152 (175)
T cd01870          73 TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGY  152 (175)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEE
T ss_conf             87899998659879999999999999997298998999987243343323456665402556689999999997499789


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             1100013874267899999836
Q gi|254780941|r  165 FMVSATKGHGCDDVLNYLCSTL  186 (311)
Q Consensus       165 ~~ISAk~g~Gid~L~~~L~~~l  186 (311)
T Consensus       153 ~EtSAk~~~nV~e~Fe~~~k~~  174 (175)
T cd01870         153 MECSAKTKEGVREVFEMATRAA  174 (175)
T ss_pred             EEECCCCCCCHHHHHHHHHHHH
T ss_conf             9976899979899999999986