HHsearch alignment for GI: 254780941 and conserved domain: cd01870
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.62 E-value=1.5e-14 Score=114.07 Aligned_cols=153 Identities=17% Similarity=0.128 Sum_probs=95.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 8998338998688999998689202105888860212789997399--48999987984010123575321002345555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKH 101 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~ 101 (311)
T Consensus 3 Ki~liGd~~VGKTsli~r~~~~~F~--~~y~pTi~~~~~~~i~~~~~~v~l~iwDtaG~e--------~~~~~~~~~~~~ 72 (175)
T cd01870 3 KLVIVGDGACGKTCLLIVFSKDQFP--EVYVPTVFENYVADIEVDGKQVELALWDTAGQE--------DYDRLRPLSYPD 72 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC--CCCCCCEEEEEEEEEEECCEEEEEEEEECCCCC--------CCCCCHHHHHCC
T ss_conf 9999998996699999999709899--984784368999999999999999999777661--------323240443148
Q ss_pred HHHHCCCCHHHHHHHCCHH--HHHHHHHH--CCCCCEEEEEECCCHHHHHH-------------HHHHHHHHHCCCCCCC
Q ss_conf 3210011000010000000--12234544--28720257872110104345-------------7888864100123343
Q gi|254780941|r 102 ADIVCLVVDSHRELKVNIH--DLLKEIAK--RSSRLILILNKIDCVKPERL-------------LEQAEIANKLVFIEKT 164 (311)
Q Consensus 102 aDiil~VvDa~~~~~~~~~--~il~~l~~--~~~p~IiVlNKiDlv~~~~l-------------~~~~~~~~~~~~~~~i 164 (311)
T Consensus 73 a~~~ilvydi~~~~Sf~~~~~~w~~~i~~~~~~~piilVgnK~DL~~~~~~~~~~~~~~~~~V~~~eg~~~a~~~~~~~f 152 (175)
T cd01870 73 TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGY 152 (175)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEE
T ss_conf 87899998659879999999999999997298998999987243343323456665402556689999999997499789
Q ss_pred CCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 1100013874267899999836
Q gi|254780941|r 165 FMVSATKGHGCDDVLNYLCSTL 186 (311)
Q Consensus 165 ~~ISAk~g~Gid~L~~~L~~~l 186 (311)
T Consensus 153 ~EtSAk~~~nV~e~Fe~~~k~~ 174 (175)
T cd01870 153 MECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred EEECCCCCCCHHHHHHHHHHHH
T ss_conf 9976899979899999999986