HHsearch alignment for GI: 254780941 and conserved domain: cd01871
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.59 E-value=4.9e-14 Score=110.66 Aligned_cols=154 Identities=17% Similarity=0.123 Sum_probs=95.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEEC--CEEEEEEECCCCHHHCCCCCCCCCCHHHHHH
Q ss_conf 21899833899868899999868920210588886021278999739--9489999879840101235753210023455
Q gi|254780941|r 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK--ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTI 99 (311)
Q Consensus 22 sg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~--~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l 99 (311)
T Consensus 1 siKivlvGd~~VGKTsli~r~~~~~f~--~~~~~Ti~~~~~~~i~~~~~~v~l~iwDtaGqe--------~~~~~~~~~~ 70 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE--------DYDRLRPLSY 70 (174)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCC--CCCCCEEEEEEEEEEEECCEEEEEEEECCCCCC--------CCHHHHHHHH
T ss_conf 969999899998699999999739999--986883788767999999999999998699972--------4067889987
Q ss_pred HHHHHHCCCCHHHHHHHCCHH--HHHHHHHH--CCCCCEEEEEECCCHHHHHHHH-------------HHHHHHHCCCCC
Q ss_conf 553210011000010000000--12234544--2872025787211010434578-------------888641001233
Q gi|254780941|r 100 KHADIVCLVVDSHRELKVNIH--DLLKEIAK--RSSRLILILNKIDCVKPERLLE-------------QAEIANKLVFIE 162 (311)
Q Consensus 100 ~~aDiil~VvDa~~~~~~~~~--~il~~l~~--~~~p~IiVlNKiDlv~~~~l~~-------------~~~~~~~~~~~~ 162 (311)
T Consensus 71 ~~a~~~ilvydi~~~~SF~~i~~~w~~~i~~~~~~~piiLVGnK~DL~~~~~~~~~~~~~~~~~vs~~eg~~~a~~~~~~ 150 (174)
T cd01871 71 PQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAV 150 (174)
T ss_pred HHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCC
T ss_conf 40668999986798788999999999999985889997987473013100456778865146775899999999875997
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 43110001387426789999983
Q gi|254780941|r 163 KTFMVSATKGHGCDDVLNYLCST 185 (311)
Q Consensus 163 ~i~~ISAk~g~Gid~L~~~L~~~ 185 (311)
T Consensus 151 ~f~EtSAk~~~nV~e~F~~lir~ 173 (174)
T cd01871 151 KYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred EEEECCCCCCCCHHHHHHHHHHH
T ss_conf 89991878895979999999951