HHsearch alignment for GI: 254780941 and conserved domain: cd01871

>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.59  E-value=4.9e-14  Score=110.66  Aligned_cols=154  Identities=17%  Similarity=0.123  Sum_probs=95.6

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEEC--CEEEEEEECCCCHHHCCCCCCCCCCHHHHHH
Q ss_conf             21899833899868899999868920210588886021278999739--9489999879840101235753210023455
Q gi|254780941|r   22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK--ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTI   99 (311)
Q Consensus        22 sg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~--~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l   99 (311)
T Consensus         1 siKivlvGd~~VGKTsli~r~~~~~f~--~~~~~Ti~~~~~~~i~~~~~~v~l~iwDtaGqe--------~~~~~~~~~~   70 (174)
T cd01871           1 AIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE--------DYDRLRPLSY   70 (174)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHCCCC--CCCCCEEEEEEEEEEEECCEEEEEEEECCCCCC--------CCHHHHHHHH
T ss_conf             969999899998699999999739999--986883788767999999999999998699972--------4067889987


Q ss_pred             HHHHHHCCCCHHHHHHHCCHH--HHHHHHHH--CCCCCEEEEEECCCHHHHHHHH-------------HHHHHHHCCCCC
Q ss_conf             553210011000010000000--12234544--2872025787211010434578-------------888641001233
Q gi|254780941|r  100 KHADIVCLVVDSHRELKVNIH--DLLKEIAK--RSSRLILILNKIDCVKPERLLE-------------QAEIANKLVFIE  162 (311)
Q Consensus       100 ~~aDiil~VvDa~~~~~~~~~--~il~~l~~--~~~p~IiVlNKiDlv~~~~l~~-------------~~~~~~~~~~~~  162 (311)
T Consensus        71 ~~a~~~ilvydi~~~~SF~~i~~~w~~~i~~~~~~~piiLVGnK~DL~~~~~~~~~~~~~~~~~vs~~eg~~~a~~~~~~  150 (174)
T cd01871          71 PQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAV  150 (174)
T ss_pred             HHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCC
T ss_conf             40668999986798788999999999999985889997987473013100456778865146775899999999875997


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             43110001387426789999983
Q gi|254780941|r  163 KTFMVSATKGHGCDDVLNYLCST  185 (311)
Q Consensus       163 ~i~~ISAk~g~Gid~L~~~L~~~  185 (311)
T Consensus       151 ~f~EtSAk~~~nV~e~F~~lir~  173 (174)
T cd01871         151 KYLECSALTQKGLKTVFDEAIRA  173 (174)
T ss_pred             EEEECCCCCCCCHHHHHHHHHHH
T ss_conf             89991878895979999999951