HHsearch alignment for GI: 254780941 and conserved domain: cd01875

>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.57  E-value=9.4e-14  Score=108.86  Aligned_cols=156  Identities=15%  Similarity=0.118  Sum_probs=96.3

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHH
Q ss_conf             1218998338998688999998689202105888860212789997399--48999987984010123575321002345
Q gi|254780941|r   21 RSGCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWST   98 (311)
Q Consensus        21 ksg~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~   98 (311)
T Consensus         2 ~~~KivlvGd~~VGKTsli~r~~~~~F~~-~y~p-ti~~~~~~~~~i~~~~v~l~iwDtaG~e~--------~~~~~~~~   71 (191)
T cd01875           2 QSIKCVVVGDGAVGKTCLLICYTTNAFPK-EYIP-TVFDNYSAQTAVDGRTVSLNLWDTAGQEE--------YDRLRTLS   71 (191)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHHCCCCC-CCCC-CCCEEEEEEEEECCEEEEEEEEECCCCCC--------HHHHHHHH
T ss_conf             51899999999989999999997299998-6466-21000467899999999999985888700--------35677877


Q ss_pred             HHHHHHHCCCCHHHHHHHCCHH--HHHHHHHH--CCCCCEEEEEECCCHHHHHHH-------------HHHHHHHHCCCC
Q ss_conf             5553210011000010000000--12234544--287202578721101043457-------------888864100123
Q gi|254780941|r   99 IKHADIVCLVVDSHRELKVNIH--DLLKEIAK--RSSRLILILNKIDCVKPERLL-------------EQAEIANKLVFI  161 (311)
Q Consensus        99 l~~aDiil~VvDa~~~~~~~~~--~il~~l~~--~~~p~IiVlNKiDlv~~~~l~-------------~~~~~~~~~~~~  161 (311)
T Consensus        72 ~~~a~~~ilvfdvt~~~Sf~~v~~~w~~ei~~~~~~~piiLvGnK~DL~~~~~~~~~~~e~~~~~vs~eeg~~~a~~~~~  151 (191)
T cd01875          72 YPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHA  151 (191)
T ss_pred             HCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCC
T ss_conf             44786899998579778899999999999997096997899988801023457788877641375569999999998099


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             3431100013874267899999836
Q gi|254780941|r  162 EKTFMVSATKGHGCDDVLNYLCSTL  186 (311)
Q Consensus       162 ~~i~~ISAk~g~Gid~L~~~L~~~l  186 (311)
T Consensus       152 ~~y~EtSAkt~~nV~e~F~~l~k~i  176 (191)
T cd01875         152 VKYLECSALNQDGVKEVFAEAVRAV  176 (191)
T ss_pred             CEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf             8899906898969899999999998