HHsearch alignment for GI: 254780941 and conserved domain: cd01879
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=100.00 E-value=5.4e-35 Score=246.27 Aligned_cols=156 Identities=24% Similarity=0.273 Sum_probs=125.2
Q ss_pred EECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCC-CCCCCCCCHHHHHHHHHHHH
Q ss_conf 83389986889999986892021058888602127899973994899998798401012-35753210023455553210
Q gi|254780941|r 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKD-SYHKLMIRLSWSTIKHADIV 105 (311)
Q Consensus 27 ivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~-~l~~~~~~~~~~~l~~aDii 105 (311)
T Consensus 1 ivG~pNvGKSTL~N~L~g~~-~~vs~~pgtTrd~~~~~~~~~~~~~~lvDtpGi~~~~~~~~~e~i~~~~~-~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFL-LGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHHCCC-CEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCCCCHHHHHHHHHH-HHCCCCCE
T ss_conf 97989888999999995998-64617898276347889962993799997987412564135678999999-85178717
Q ss_pred CCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 01100001000000012234544287202578721101043457888864100123343110001387426789999983
Q gi|254780941|r 106 CLVVDSHRELKVNIHDLLKEIAKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVSATKGHGCDDVLNYLCST 185 (311)
Q Consensus 106 l~VvDa~~~~~~~~~~il~~l~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~ISAk~g~Gid~L~~~L~~~ 185 (311)
T Consensus 79 l~vvD~~~-~-~~~l~~~~~l~~~~~p~ivV~NK~D~~~~~~~~~~~~~l~~~~~~-~ii~iSA~~g~Gi~~L~~~i~el 155 (158)
T cd01879 79 VNVVDATN-L-ERNLYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLSELLGV-PVVPTSARKGEGIDELKDAIAEL 155 (158)
T ss_pred EEEEECCH-H-HHHHHHHHHHHHCCCCEEEEEEHHHHHHHCCCHHHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99977740-6-776899999986599889994027765522546679999987199-48999877897999999999998
Q ss_pred CC
Q ss_conf 66
Q gi|254780941|r 186 LP 187 (311)
Q Consensus 186 lp 187 (311)
T Consensus 156 ~~ 157 (158)
T cd01879 156 AE 157 (158)
T ss_pred HC
T ss_conf 67