HHsearch alignment for GI: 254780941 and conserved domain: cd01881
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=100.00 E-value=2.3e-33 Score=235.71 Aligned_cols=158 Identities=28% Similarity=0.311 Sum_probs=122.3
Q ss_pred EECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEEC-CEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 833899868899999868920210588886021278999739-9489999879840101235753210023455553210
Q gi|254780941|r 27 LVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEK-ESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHADIV 105 (311)
Q Consensus 27 ivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~-~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~aDii 105 (311)
T Consensus 1 ivG~PNvGKSTL~N~Lt~~~~-~v~~~pgTTr~~~~g~~~~~~~~~i~~~DtpGi~~~~~~-~~~~~~~~l~~~~~~d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASE-GRGLGNQFLAHIRRADAI 78 (176)
T ss_pred CCCCCCCCHHHHHHHHHCCCC-EEECCCCCEEEEEEEEEEECCCCEEEEEECCCCCCCCHH-HHHHHHHHHHHHHCCCEE
T ss_conf 969998889999999968996-030789967612467999479966999957875457337-878999999874108899
Q ss_pred CCCCHHHHHHHCCHHHHH-------HHH----------HHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 011000010000000122-------345----------442872025787211010434578888641001233431100
Q gi|254780941|r 106 CLVVDSHRELKVNIHDLL-------KEI----------AKRSSRLILILNKIDCVKPERLLEQAEIANKLVFIEKTFMVS 168 (311)
Q Consensus 106 l~VvDa~~~~~~~~~~il-------~~l----------~~~~~p~IiVlNKiDlv~~~~l~~~~~~~~~~~~~~~i~~IS 168 (311)
T Consensus 79 l~vvD~~~~~~~~~~~~~~~~~~i~~el~~~~~~~~~~~~~~kp~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~ii~iS 158 (176)
T cd01881 79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPIS 158 (176)
T ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEEECEECCCHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 99998987655454458999999999999711566555432697199996860347003159999999746899589997
Q ss_pred CCCCCCHHHHHHHHHHHC
Q ss_conf 013874267899999836
Q gi|254780941|r 169 ATKGHGCDDVLNYLCSTL 186 (311)
Q Consensus 169 Ak~g~Gid~L~~~L~~~l 186 (311)
T Consensus 159 A~~~~gi~~L~~~i~~~L 176 (176)
T cd01881 159 AKTEEGLDELIRAIYELL 176 (176)
T ss_pred CCCCCCHHHHHHHHHHHC
T ss_conf 778879999999999659